BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (291 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B... 581 e-164 UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B... 426 e-118 UniRef50_Q87NB7 Ribosomal large subunit pseudouridine synthase B... 386 e-106 UniRef50_B6EJI1 Pseudouridine synthase n=8 Tax=Gammaproteobacter... 382 e-105 UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacter... 298 1e-79 UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter Rep... 298 1e-79 UniRef50_A5WGV6 Pseudouridine synthase n=7 Tax=Moraxellaceae Rep... 295 2e-78 UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ... 291 3e-77 UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B... 285 9e-76 UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 285 2e-75 UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72... 280 3e-74 UniRef50_B9ZS86 Pseudouridine synthase n=2 Tax=Chromatiales RepI... 275 1e-72 UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria Re... 274 2e-72 UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria R... 266 8e-70 UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria R... 265 1e-69 UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 264 3e-69 UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 264 3e-69 UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 263 5e-69 UniRef50_Q1H048 Pseudouridine synthase n=4 Tax=Betaproteobacteri... 258 1e-67 UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formi... 258 2e-67 UniRef50_D0L0G8 Pseudouridine synthase n=1 Tax=Halothiobacillus ... 258 2e-67 UniRef50_Q89AL1 Ribosomal large subunit pseudouridine synthase B... 251 2e-65 UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 249 6e-65 UniRef50_A5CX60 Pseudouridine synthase n=1 Tax=Candidatus Vesico... 246 6e-64 UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 246 8e-64 UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria Re... 245 2e-63 UniRef50_Q5F8V3 Pseudouridine synthase n=21 Tax=Proteobacteria R... 244 3e-63 UniRef50_B4RM91 Pseudouridine synthase n=8 Tax=Betaproteobacteri... 244 3e-63 UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter... 242 1e-62 UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae Re... 240 4e-62 UniRef50_Q87BI2 Ribosomal large subunit pseudouridine synthase B... 236 5e-61 UniRef50_B6BUN1 Pseudouridine synthase n=1 Tax=beta proteobacter... 230 4e-59 UniRef50_P42395 Ribosomal large subunit pseudouridine synthase B... 229 6e-59 UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 228 3e-58 UniRef50_Q605S3 Pseudouridine synthase n=1 Tax=Methylococcus cap... 226 8e-58 UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 179 7e-44 UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadale... 174 3e-42 UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q2... 170 5e-41 UniRef50_UPI0000D52F9C putative ribosomal large subunit pseudour... 170 5e-41 UniRef50_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K... 162 2e-38 UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae ... 160 6e-38 UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 159 7e-38 UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alex... 157 3e-37 UniRef50_Q2G8T2 Pseudouridine synthase n=5 Tax=Sphingomonadales ... 156 8e-37 UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 156 8e-37 UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q... 156 8e-37 UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae... 156 9e-37 UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3... 155 1e-36 UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacte... 155 1e-36 UniRef50_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris ... 154 5e-36 UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibac... 153 5e-36 UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organism... 153 6e-36 UniRef50_C6XQT2 Pseudouridine synthase n=1 Tax=Hirschia baltica ... 152 1e-35 UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9... 150 5e-35 UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 150 6e-35 UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine syn... 150 6e-35 UniRef50_B7L142 Pseudouridine synthase n=9 Tax=Alphaproteobacter... 150 7e-35 UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 149 9e-35 UniRef50_C8WBY9 Pseudouridine synthase n=3 Tax=Zymomonas mobilis... 149 1e-34 UniRef50_B9JSE7 Ribosomal large subunit pseudouridine synthase B... 149 1e-34 UniRef50_A8I6C3 Pseudouridine synthase n=6 Tax=Alphaproteobacter... 148 2e-34 UniRef50_C6XHY6 Pseudouridine synthase n=1 Tax=Candidatus Liberi... 148 2e-34 UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indi... 148 2e-34 UniRef50_B4W9R3 Pseudouridine synthase n=2 Tax=Brevundimonas Rep... 148 2e-34 UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=... 148 3e-34 UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limn... 147 3e-34 UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter ... 147 6e-34 UniRef50_B8ETE9 Pseudouridine synthase n=1 Tax=Methylocella silv... 146 7e-34 UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 146 7e-34 UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 146 1e-33 UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=... 145 1e-33 UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 145 2e-33 UniRef50_C5SKU3 Pseudouridine synthase n=2 Tax=Asticcacaulis exc... 145 2e-33 UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=... 144 4e-33 UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1... 143 7e-33 UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succi... 143 8e-33 UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces uroge... 143 9e-33 UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B... 142 1e-32 UniRef50_C1A8K5 Pseudouridine synthase n=1 Tax=Gemmatimonas aura... 142 1e-32 UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B... 142 2e-32 UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 142 2e-32 UniRef50_B6R892 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. ... 141 3e-32 UniRef50_UPI00006CCA31 conserved hypothetical protein n=1 Tax=Te... 140 4e-32 UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrional... 140 5e-32 UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 140 5e-32 UniRef50_Q13BM8 Pseudouridine synthase n=55 Tax=Alphaproteobacte... 140 5e-32 UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5... 140 6e-32 UniRef50_Q0C3M6 Pseudouridine synthase n=1 Tax=Hyphomonas neptun... 140 6e-32 UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales R... 139 8e-32 UniRef50_Q1D9N8 Pseudouridine synthase n=4 Tax=Cystobacterineae ... 139 9e-32 UniRef50_Q8T866 Putative uncharacterized protein n=1 Tax=Dictyos... 139 1e-31 UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actino... 139 1e-31 UniRef50_A9MDW0 Pseudouridine synthase n=43 Tax=Rhizobiales RepI... 139 2e-31 UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 138 2e-31 UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium R... 138 2e-31 UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae ... 138 2e-31 UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q0... 137 3e-31 UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0... 137 3e-31 UniRef50_Q0G3T3 Pseudouridine synthase n=4 Tax=Alphaproteobacter... 137 4e-31 UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum fe... 137 4e-31 UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax... 137 5e-31 UniRef50_Q1RJR2 Uncharacterized RNA pseudouridine synthase RBE_0... 136 7e-31 UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organism... 136 7e-31 UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi... 136 1e-30 UniRef50_A5IXL5 Pseudouridine synthase n=3 Tax=Mycoplasma RepID=... 135 1e-30 UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomona... 135 1e-30 UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 135 2e-30 UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 135 2e-30 UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyr... 135 2e-30 UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula m... 135 2e-30 UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=... 135 2e-30 UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterinea... 134 2e-30 UniRef50_C6B2K7 RNA-binding S4 domain protein n=20 Tax=Alphaprot... 134 3e-30 UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 133 6e-30 UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales Rep... 133 8e-30 UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 133 8e-30 UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1... 133 8e-30 UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 133 8e-30 UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae... 132 1e-29 UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 131 2e-29 UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium r... 131 2e-29 UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta... 131 3e-29 UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0... 131 3e-29 UniRef50_A0CY18 Chromosome undetermined scaffold_30, whole genom... 131 3e-29 UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr03... 131 3e-29 UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium Re... 130 4e-29 UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium c... 130 4e-29 UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter the... 130 5e-29 UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 130 5e-29 UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (... 130 5e-29 UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=... 130 7e-29 UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8... 129 8e-29 UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 129 1e-28 UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine... 129 1e-28 UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytop... 129 2e-28 UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3... 128 2e-28 UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium R... 128 3e-28 UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uen... 127 3e-28 UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter rube... 127 4e-28 UniRef50_D2UX35 Predicted protein n=1 Tax=Naegleria gruberi RepI... 127 6e-28 UniRef50_O05668 Uncharacterized RNA pseudouridine synthase ML137... 127 6e-28 UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium R... 126 8e-28 UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_14... 126 9e-28 UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vag... 126 9e-28 UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 125 1e-27 UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracel... 125 1e-27 UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapol... 125 2e-27 UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria Rep... 125 2e-27 UniRef50_D0NXA7 RNA pseudouridine synthase, putative n=1 Tax=Phy... 125 2e-27 UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium Rep... 125 2e-27 UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marin... 125 2e-27 UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales Rep... 125 2e-27 UniRef50_B5YMC9 Predicted protein n=1 Tax=Thalassiosira pseudona... 124 3e-27 UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B... 124 4e-27 UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae Rep... 123 6e-27 UniRef50_B5ELL5 Pseudouridine synthase n=3 Tax=Acidithiobacillus... 123 7e-27 UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenen... 123 8e-27 UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium fe... 123 9e-27 UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 122 1e-26 UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae... 122 1e-26 UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1... 122 1e-26 UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter hepari... 122 1e-26 UniRef50_C6AV89 Pseudouridine synthase n=17 Tax=Rhizobiaceae Rep... 122 2e-26 UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroid... 122 2e-26 UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 121 3e-26 UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gin... 121 3e-26 UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (c... 121 3e-26 UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID... 121 3e-26 UniRef50_O66829 Uncharacterized RNA pseudouridine synthase aq_55... 120 6e-26 UniRef50_Q73PC4 Pseudouridine synthase n=1 Tax=Treponema dentico... 120 7e-26 UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wo... 120 8e-26 UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia ... 120 8e-26 UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6... 119 9e-26 UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin51... 119 2e-25 UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7... 119 2e-25 UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3... 119 2e-25 UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 118 2e-25 UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria Re... 118 2e-25 UniRef50_A9AXM1 Pseudouridine synthase n=3 Tax=Bacteria RepID=A9... 118 2e-25 UniRef50_Q2SRP5 Ribosomal large subunit pseudouridine synthase B... 118 3e-25 UniRef50_Q6MIA3 Putative pseudouridylate synthase n=1 Tax=Bdello... 117 3e-25 UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vaden... 117 4e-25 UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovib... 117 5e-25 UniRef50_D0RRJ0 Ribosomal large subunit pseudouridine synthase B... 117 6e-25 UniRef50_O51155 Uncharacterized RNA pseudouridine synthase BB_01... 117 6e-25 UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales ... 116 7e-25 UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae Re... 116 9e-25 UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine syn... 116 9e-25 UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales Rep... 115 1e-24 UniRef50_B1ZYG8 Pseudouridine synthase n=3 Tax=Verrucomicrobia R... 115 2e-24 UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae Rep... 115 2e-24 UniRef50_B3PMD0 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=... 114 4e-24 UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 114 5e-24 UniRef50_B7G1P9 Predicted protein n=1 Tax=Phaeodactylum tricornu... 114 5e-24 UniRef50_C4XEA6 Pseudouridine synthase n=1 Tax=Mycoplasma fermen... 113 7e-24 UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales Re... 113 8e-24 UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae... 112 1e-23 UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes Rep... 112 1e-23 UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 112 1e-23 UniRef50_C9LMR9 Pseudouridine synthase n=1 Tax=Dialister invisus... 112 1e-23 UniRef50_UPI0001BC54DC ribosomal large subunit pseudouridine syn... 112 1e-23 UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 112 2e-23 UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutac... 111 3e-23 UniRef50_A9SG51 Predicted protein n=3 Tax=Embryophyta RepID=A9SG... 111 3e-23 UniRef50_Q04T62 Pseudouridine synthase n=4 Tax=Leptospira RepID=... 111 3e-23 UniRef50_B1X5I1 Pseudouridine synthase, Rsu n=1 Tax=Paulinella c... 110 5e-23 UniRef50_C9M8T9 RNA pseudouridine synthase n=2 Tax=Synergistacea... 110 8e-23 UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gas... 110 8e-23 UniRef50_A6DF49 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 109 1e-22 UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID... 109 1e-22 UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 108 2e-22 UniRef50_Q7VBH8 Pseudouridine synthase n=1 Tax=Prochlorococcus m... 108 2e-22 UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodi... 108 2e-22 UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepI... 108 2e-22 UniRef50_Q1IR68 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 108 3e-22 UniRef50_Q4AAG8 Pseudouridine synthase n=6 Tax=Mycoplasma RepID=... 107 4e-22 UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepI... 107 4e-22 UniRef50_Q13UY7 Pseudouridine synthase n=45 Tax=root RepID=Q13UY... 107 4e-22 UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F... 107 4e-22 UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG ... 107 5e-22 UniRef50_C1FFP6 Predicted protein (Fragment) n=4 Tax=Mamiellales... 107 5e-22 UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C... 107 7e-22 UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F... 106 8e-22 UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 106 8e-22 UniRef50_B2UMD6 Pseudouridine synthase n=1 Tax=Akkermansia mucin... 106 8e-22 UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 106 1e-21 UniRef50_UPI00016B2405 pseudouridine synthase n=6 Tax=candidate ... 106 1e-21 UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A... 106 1e-21 UniRef50_B3L0G1 Pseudouridine synthetase, putative n=1 Tax=Plasm... 105 1e-21 UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A... 105 2e-21 UniRef50_Q30U38 Pseudouridine synthase n=12 Tax=Epsilonproteobac... 105 2e-21 UniRef50_D2MQD6 Pseudouridylate synthase n=1 Tax=Bulleidia extru... 105 2e-21 UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 104 3e-21 UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A... 104 4e-21 UniRef50_B0B8U9 Pseudouridine synthase n=10 Tax=Chlamydiales Rep... 103 5e-21 UniRef50_C0QV84 Pseudouridine synthase n=1 Tax=Brachyspira hyody... 103 6e-21 UniRef50_C1QDI4 Pseudouridine synthase n=1 Tax=Brachyspira murdo... 103 6e-21 UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 103 7e-21 UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflex... 103 7e-21 UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 103 7e-21 UniRef50_Q9ZJG0 Uncharacterized RNA pseudouridine synthase jhp_1... 103 8e-21 UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae Re... 103 9e-21 UniRef50_C7RHU0 Pseudouridine synthase n=3 Tax=Anaerococcus RepI... 103 9e-21 UniRef50_Q688C2 Pseudouridine synthase n=1 Tax=Mycoplasma mobile... 103 9e-21 UniRef50_B8ET33 Pseudouridine synthase n=29 Tax=Proteobacteria R... 103 1e-20 UniRef50_A9NGL0 rRNA pseudouridylate synthase n=1 Tax=Acholeplas... 103 1e-20 UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter fl... 102 1e-20 UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organis... 102 1e-20 UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi A... 102 1e-20 UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteracea... 102 2e-20 >UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B n=117 Tax=Bacteria RepID=RLUB_ECO57 Length = 290 Score = 581 bits (1497), Expect = e-164, Method: Compositional matrix adjust. Identities = 289/289 (100%), Positives = 289/289 (100%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR Sbjct: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT Sbjct: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI Sbjct: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL Sbjct: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNN 289 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNN Sbjct: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNN 289 >UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B n=177 Tax=Gammaproteobacteria RepID=RLUB_HAEIN Length = 357 Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust. Identities = 204/277 (73%), Positives = 240/277 (86%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 EKLQKVLARAG GSRREIE++I AGRVSV+GKIA LGDR++V G+K+RIDG +I++ + Sbjct: 76 EKLQKVLARAGQGSRREIETMIAAGRVSVEGKIATLGDRIDVHSGVKVRIDGQIINLSHT 135 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 ++ICRVL YYKPEGELCTR+DPEGR TVFDRLP+L G+RWIAVGRLD+NT GLLLFTTD Sbjct: 136 QKEICRVLMYYKPEGELCTRSDPEGRATVFDRLPRLTGSRWIAVGRLDINTSGLLLFTTD 195 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRLMHPSREVEREY+VRVFGQVDDA L L +GVQLEDG A FK IKF+GG GINQ Sbjct: 196 GELANRLMHPSREVEREYSVRVFGQVDDAMLARLRKGVQLEDGLANFKEIKFTGGVGINQ 255 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 WY+VTL EGRNREVRRLWE+ G+QVSRLIR+RYG+I L KGLPRGGW E+DL NYLRE Sbjct: 256 WYDVTLMEGRNREVRRLWESQGIQVSRLIRIRYGNIKLMKGLPRGGWEEMDLENVNYLRE 315 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVS 279 LV LP ET +K+ V++ RR K+ QIR+AVKR+S+++ Sbjct: 316 LVGLPAETETKLDVKQASRRPKSGQIRKAVKRYSEMN 352 >UniRef50_Q87NB7 Ribosomal large subunit pseudouridine synthase B n=17 Tax=Bacteria RepID=RLUB_VIBPA Length = 312 Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust. Identities = 197/296 (66%), Positives = 237/296 (80%), Gaps = 10/296 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSEKLQKVLARAGHGSRREIES+I++GRVSV+G +AKLG+R+E + +RIDGH++S + Sbjct: 1 MSEKLQKVLARAGHGSRREIESLIKSGRVSVNGVVAKLGERLEDESSV-VRIDGHIVSAK 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E ICRVLAYYKPEGELCTR+DPEGR TVFDRLPK+RG+RWI+VGRLD NT GLLLFT Sbjct: 60 VQEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFT 119 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDGELANRLMHPSR+VEREY VRVFG+V + K+R+L +GV+LEDG A F+ + ++GGEG+ Sbjct: 120 TDGELANRLMHPSRQVEREYLVRVFGEVTEQKVRNLVKGVELEDGLARFEDVVYAGGEGM 179 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N + V + EGRNREVRRLWE+ VSRL RVRYGDI L K LPRGGW ELDL + NYL Sbjct: 180 NHTFYVVINEGRNREVRRLWESQECTVSRLKRVRYGDIFLDKKLPRGGWMELDLKEVNYL 239 Query: 241 RELVELPPETSSKVAVEKD-----RRRMKANQIRRAVKRHSQ-VSGGRRSGGRNNN 290 RELVEL PE + + + KD R R ++ +IRRAVKRH + VS S GR+NN Sbjct: 240 RELVELRPEKETMLDLSKDNTSRKRERARSQKIRRAVKRHEERVST---SKGRSNN 292 >UniRef50_B6EJI1 Pseudouridine synthase n=8 Tax=Gammaproteobacteria RepID=B6EJI1_ALISL Length = 354 Score = 382 bits (981), Expect = e-105, Method: Compositional matrix adjust. Identities = 191/299 (63%), Positives = 239/299 (79%), Gaps = 13/299 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSEKLQKVLARAG GSRRE+E++I+AGRVS+DG+ AKLGDR+E +IRIDGH++SV+ Sbjct: 1 MSEKLQKVLARAGLGSRRELETMIQAGRVSIDGQKAKLGDRLENVDA-RIRIDGHVVSVK 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 ES + ICRVLAY+KPEGELCTR+DPEGR TVFDRLPK++ +RW++VGRLD NT GLLLFT Sbjct: 60 ESTDVICRVLAYHKPEGELCTRHDPEGRRTVFDRLPKIKDSRWVSVGRLDANTAGLLLFT 119 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDGELANRLMHPSR+VEREY R+FG ++D +++L GV+LEDG A F+ + ++GGEG+ Sbjct: 120 TDGELANRLMHPSRKVEREYMCRIFGDINDKMVKNLVTGVKLEDGEARFEDVMYAGGEGM 179 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N + V + EGRNREVRRLW++ GV VSRL RVRYGDI L K LPRGGW EL+L + NYL Sbjct: 180 NHTFYVVINEGRNREVRRLWDSQGVTVSRLKRVRYGDIFLEKALPRGGWMELELKEVNYL 239 Query: 241 RELVELPPETSSKVAVEKDRR---RMKANQIRRAVKRHSQ-------VSGGRRSGGRNN 289 R++VELP E S + V+K+ R + K+ +IRRAVKRH + +GGRR GRNN Sbjct: 240 RDMVELPHEKESLLDVDKESRKRAKSKSQKIRRAVKRHDERTTEDRNTAGGRR--GRNN 296 >UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacteria RepID=B2HUK5_ACIBC Length = 307 Score = 298 bits (764), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 154/284 (54%), Positives = 199/284 (70%), Gaps = 2/284 (0%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSEKLQKVLAR G GSRR +E +I AGRVSV+G+IA++G+R+E PG ++RIDG + + Sbjct: 1 MSEKLQKVLARIGLGSRRYMEEVIAAGRVSVNGRIAQVGERIE--PGDELRIDGRKVQFQ 58 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E RVL YYKPEGE+C+RNDPE RPTVFD LP++ RW+ VGRLD+N+ GLLLFT Sbjct: 59 IEDEIRRRVLIYYKPEGEICSRNDPEKRPTVFDHLPQIANDRWVMVGRLDINSTGLLLFT 118 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELANRLMHPS E+EREYAVRV G+V +++ GV+LEDGPA F++ GGEGI Sbjct: 119 NDGELANRLMHPSNEIEREYAVRVMGEVTPQLRQNMVNGVELEDGPAKFESFSEIGGEGI 178 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+WY V + EGRNREVRR++E+ G++VSRL+R RYG + LP+ L G W ELD + L Sbjct: 179 NRWYQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMELDKTDIDNL 238 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRS 284 + VEL P + + RR + + A +R + RR Sbjct: 239 AKSVELKPRQGTGLFGMAKRRTERMTEKPMAARRGGYLRQQRRD 282 >UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter RepID=D0SB72_ACIJO Length = 368 Score = 298 bits (763), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 148/248 (59%), Positives = 187/248 (75%), Gaps = 2/248 (0%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSEKLQKVLAR G GSRR +E +I AGRVSV+G++A++G+R+E PG ++RIDG +S + Sbjct: 1 MSEKLQKVLARVGLGSRRYMEEVIAAGRVSVNGQVAQVGERIE--PGDELRIDGRKVSFQ 58 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E RVL YYKPEGE+C+RNDPE RPTVFD+LP + RW+ VGRLD+N+ GLLLFT Sbjct: 59 IEDEIRRRVLIYYKPEGEICSRNDPESRPTVFDQLPAIANDRWVMVGRLDINSTGLLLFT 118 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELANRLMHPS EVEREYAVRV G+V ++ +GV L+DGPA F++ GGEGI Sbjct: 119 NDGELANRLMHPSNEVEREYAVRVMGEVTPQIKNNMLKGVVLDDGPAKFESFSEIGGEGI 178 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+WY V + EGRNREVRR++E+ G++VSRL+R RYG + LP+ L G W ELD + L Sbjct: 179 NRWYQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMELDKNDIDNL 238 Query: 241 RELVELPP 248 + VEL P Sbjct: 239 TKAVELKP 246 >UniRef50_A5WGV6 Pseudouridine synthase n=7 Tax=Moraxellaceae RepID=A5WGV6_PSYWF Length = 345 Score = 295 bits (754), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 158/293 (53%), Positives = 201/293 (68%), Gaps = 5/293 (1%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +EKLQK LAR G GSRR++E +I+AGRVS++ K A +GDRVE G +IR+DG LI + Sbjct: 42 TEKLQKALARMGLGSRRQMEEVIKAGRVSINQKPASIGDRVE--QGDEIRVDGRLIKYKS 99 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 E+ RVLAYYKPEGE+C+ NDPEGR TVF+RLPKL RWI VGRLD+N+ GLLLFT Sbjct: 100 EREKRRRVLAYYKPEGEICSANDPEGRTTVFERLPKLTHDRWIMVGRLDINSTGLLLFTN 159 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGELA+RLMHPS E+ REYAVR+ G++ +R+L+ GV LEDG A F+ IK GGEG+N Sbjct: 160 DGELAHRLMHPSNEIVREYAVRILGELTPEMMRNLTDGVMLEDGLAKFEDIKQGGGEGVN 219 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +WY+V L EGRNREVRRL E+ G++VSRL+R YG + LPK L G + ELD + L Sbjct: 220 KWYHVKLKEGRNREVRRLIESQGLKVSRLLRTSYGSVDLPKELRTGRFIELDRKDIHRLI 279 Query: 242 ELVELPPETSSKV---AVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 +LV + P V A EK R K R ++ S+ S G+N + Sbjct: 280 DLVGIRPREDMGVHGKAKEKKERFQKKPMKARTIRTSSRSGRASTSTGKNTSA 332 >UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JIZ1_9ALTE Length = 367 Score = 291 bits (744), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 157/288 (54%), Positives = 199/288 (69%), Gaps = 9/288 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++QK+LARAG GSRREIE ++AGR+ V+GK G + V+ ++ DG + V + Sbjct: 57 ERIQKLLARAGVGSRREIEGWMDAGRLLVNGKPVTPGQKATVSDVFEL--DGKRLEVAAA 114 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 AE + RVL Y KPEGE+ TR DPEGRPTVFDRLP+LR RWI++GRLD+NT GL++FTTD Sbjct: 115 AEVLRRVLIYNKPEGEVTTRKDPEGRPTVFDRLPRLREHRWISIGRLDLNTTGLVMFTTD 174 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRLMHPS E++REYAVR+FG+VDDA + L GV LEDG A F I +GG G+N+ Sbjct: 175 GELANRLMHPSSEIDREYAVRIFGEVDDAMIERLRTGVTLEDGEAKFSDISAAGGTGMNR 234 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W++VTL EGRNREVRRLWE+ GV+VSRL RVRYG I LP L G W ELD + L Sbjct: 235 WFHVTLLEGRNREVRRLWESQGVRVSRLKRVRYGSIFLPSRLTVGKWEELDQKAVDLLSR 294 Query: 243 LVEL-----PPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSG 285 V L P +T + A + ++R A R+ + S S G +SG Sbjct: 295 TVGLAKMAVPQQTPDEAAAQARQQRKAAPVTNRSNRAAS--SPGSKSG 340 >UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B n=67 Tax=Gammaproteobacteria RepID=RLUB_PSEAE Length = 386 Score = 285 bits (730), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 158/298 (53%), Positives = 199/298 (66%), Gaps = 14/298 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 + EKLQKVLAR G GSRR++E I GRV+V+G +A LG RV+ I +DGHLI Sbjct: 12 VGEKLQKVLARLGVGSRRDVEVWIAEGRVNVNGSVASLGQRVDSHDA--ITVDGHLIRRE 69 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E+AE + RVL Y KPEGE+CTR+DPEGRPT+FDRLP+LR RWI VGRLD+NT GLLLFT Sbjct: 70 EAAESVRRVLIYNKPEGEVCTRDDPEGRPTIFDRLPRLRTGRWINVGRLDINTTGLLLFT 129 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFS-GGEG 179 TDGELANRLMHPS E++REYAVRV G+V + + L GV LEDGPA F I+ + GGEG Sbjct: 130 TDGELANRLMHPSYEMDREYAVRVRGEVTEEMIERLLNGVMLEDGPAKFSDIQQAPGGEG 189 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 N WY+ + EGRNREVRRLWE+ G+ VSRL RVR+G + L L G + E+D + + Sbjct: 190 FNHWYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLTSELTMGRYREMDQREIDI 249 Query: 240 LRELVELPP------ETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 L E V L P T ++ E+ +R+ R + R + GR+ R +G Sbjct: 250 LSEEVGLKPVALPGMTTKAREKAERQQRKQA-----RPLARSERPEAGRKRAPRREDG 302 >UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=C4ZJR2_THASP Length = 379 Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 144/267 (53%), Positives = 197/267 (73%), Gaps = 6/267 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKVLA+AG SRREIE + AGR+SV+G A LG ++ PG +++++G L+ +R + Sbjct: 117 ERLQKVLAQAGVASRREIEEWVVAGRISVNGLPASLGQKI--GPGDRVKVNGKLVPLRFT 174 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 ++ RVL Y+KPEGE+ +R+DPEGRPTVF+RLP LR RW+AVGRLD NT GLLLFT D Sbjct: 175 -QRSPRVLIYHKPEGEIVSRDDPEGRPTVFERLPILRKGRWLAVGRLDFNTSGLLLFTND 233 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LAN+LMHP E+EREYAVR+ G++ + +++ L+ G+QLEDGPA F ++ GGEG N Sbjct: 234 GDLANKLMHPRYELEREYAVRILGELTEEQVKSLTDGIQLEDGPAKFNLLRDEGGEGANH 293 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 WY VT++EGRNREVRR++EAVG+ VSRL+RVRYG + LP L RG W E+ A+ Sbjct: 294 WYRVTISEGRNREVRRMFEAVGLTVSRLMRVRYGSVELPARLKRGMWMEMPEAEACA--- 350 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIR 269 L LPP S+ +D+R +K ++ + Sbjct: 351 LAGLPPPQQSRQQDLRDKRPVKLHRTQ 377 >UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72 RepID=A1K7C2_AZOSB Length = 356 Score = 280 bits (717), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 145/246 (58%), Positives = 184/246 (74%), Gaps = 6/246 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKVLA+AG SRREIE ++ AGR+SV+G A LG ++ PG +++++G LI +R S Sbjct: 91 ERLQKVLAQAGVASRREIEELVVAGRISVNGLPASLGQKI--GPGDRVKLNGKLIPLRFS 148 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 ++ RVL Y+KPEGE+ +R+DPEGRPTVF+RLP LR RW+AVGRLD NT GLLLFT D Sbjct: 149 -QRSPRVLVYHKPEGEIVSRDDPEGRPTVFERLPLLRKGRWLAVGRLDFNTSGLLLFTND 207 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LANRLMHP E+ REYAVR+ GQ+ + + + L G+QLEDGPA F ++ +GGEG+N Sbjct: 208 GDLANRLMHPRYELTREYAVRLLGQLTEEQGQSLVDGIQLEDGPARFLSLVDAGGEGVNH 267 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 WY VTL EGRNREVRR++EAVG+ VSRL+RVRYG + LP L RG W EL A Sbjct: 268 WYRVTLAEGRNREVRRMFEAVGLTVSRLMRVRYGPVELPARLKRGMWMELPEADACA--- 324 Query: 243 LVELPP 248 L LPP Sbjct: 325 LAGLPP 330 >UniRef50_B9ZS86 Pseudouridine synthase n=2 Tax=Chromatiales RepID=B9ZS86_9GAMM Length = 318 Score = 275 bits (703), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 148/251 (58%), Positives = 182/251 (72%), Gaps = 6/251 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSE++QKVLA G GSRREIE IE G V V+ + AKLGD +V P IR+ G +I + Sbjct: 1 MSERVQKVLAARGLGSRREIEGWIERGEVKVNQRTAKLGD--QVGPNDVIRVRGRVIHM- 57 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 AE R L Y+KP GE+C+R+DPEGR VF LP+L+G RW+AVGRLD+NT GLLLFT Sbjct: 58 --AEHAHRWLVYHKPVGEICSRSDPEGRKPVFASLPRLKGQRWVAVGRLDLNTSGLLLFT 115 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDGELANRLMHPS +EREYAVRV G+V D R L GV+LEDGPA F ++ GG+G Sbjct: 116 TDGELANRLMHPSHSLEREYAVRVLGEVPDDTRRMLLEGVELEDGPARFDVLEERGGDGA 175 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N W++V ++EGRNR VRRLW+AVGV VSRLIRVRYG + L +GL G +L++ + L Sbjct: 176 NHWFHVVVSEGRNRLVRRLWDAVGVTVSRLIRVRYGPVVLGRGLKTGASRDLEVREVEAL 235 Query: 241 RELVELP-PET 250 E VELP PE+ Sbjct: 236 YEAVELPVPES 246 >UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria RepID=C7I043_THIIN Length = 562 Score = 274 bits (701), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 142/240 (59%), Positives = 179/240 (74%), Gaps = 3/240 (1%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA++G GSRRE+E +I AGRVSV+G+ A LG R+ P +IR++G +I R Sbjct: 171 APKLHKVLAQSGVGSRREMEDLILAGRVSVNGEPAHLGQRI--LPTDQIRVNGKIIKRRL 228 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 Q RVLAY+KP GE+ + DPEGRPTVF LPKL+GA+W AVGRLD+NT GLLLFTT Sbjct: 229 RPAQ-ARVLAYHKPTGEVVSFKDPEGRPTVFQHLPKLQGAKWTAVGRLDINTEGLLLFTT 287 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+LANRLMHPS EREYAVRV G++D A +L GVQL DGPA F +++ +GGEG N Sbjct: 288 SGDLANRLMHPSYGAEREYAVRVLGELDAAARDELLEGVQLGDGPARFLSLEEAGGEGAN 347 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +W+ V ++EGRNREVRR++EAVG+ VSRLIRVRY + LP GL RG + ELD + L+ Sbjct: 348 RWWRVVISEGRNREVRRMFEAVGLTVSRLIRVRYASVVLPAGLRRGDFVELDKSLVQALQ 407 >UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria RepID=Q140U9_BURXL Length = 633 Score = 266 bits (679), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 136/245 (55%), Positives = 174/245 (71%), Gaps = 3/245 (1%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA AG GSRR++E +I AGRVSV+G+ A +G R+ P ++RI+G + R+ Sbjct: 216 APKLHKVLAEAGMGSRRDMEELIVAGRVSVNGEPAHIGQRI--MPTDQVRINGKPVK-RK 272 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 A + RVL Y+KP GE+ + DPEGRP+VFD+LP ++ A+W+AVGRLD NT GLL+ TT Sbjct: 273 LASKPPRVLLYHKPTGEIVSHADPEGRPSVFDKLPPMKTAKWLAVGRLDFNTEGLLMLTT 332 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+LANR MHP VEREYAVRV G++ + + L GV+L+DGPA F I+ GGEG N Sbjct: 333 SGDLANRFMHPRYSVEREYAVRVVGELAEGMRQKLLHGVELDDGPANFLRIRDGGGEGTN 392 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 WY+V L EGRNREVRR++EA G+ VSRLIR R+G I LPKGL RG W EL+ Q L Sbjct: 393 HWYHVALAEGRNREVRRMFEAAGLMVSRLIRTRHGPISLPKGLKRGRWEELEDNQVRALM 452 Query: 242 ELVEL 246 V L Sbjct: 453 ASVGL 457 >UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria RepID=Q1LLR3_RALME Length = 631 Score = 265 bits (677), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 133/232 (57%), Positives = 170/232 (73%), Gaps = 3/232 (1%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA G GSRRE+E +I GRVSV+G A +G R+ P ++R++G LI R+ Sbjct: 234 APKLHKVLAEGGLGSRREMEELILQGRVSVNGLPAHIGQRI--LPTDQVRVNGKLIH-RK 290 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + RVL Y+KP GE+ +++DPEGRPTVFD LP+++ +W+AVGRLD NT GLL+FTT Sbjct: 291 VTTKPPRVLLYHKPSGEIVSQSDPEGRPTVFDSLPRIKNGKWVAVGRLDFNTEGLLIFTT 350 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G++ANR MHP VEREYAVR G++ +A + L G+QL+DG A F I GGEG+N Sbjct: 351 SGDIANRFMHPRYGVEREYAVRTLGELAEADRQRLLHGIQLDDGEANFLRIADGGGEGVN 410 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELD 233 QWY+V LTEGRNREVRR++EAVG+ VSRLIR RYG LP+GL RG W ELD Sbjct: 411 QWYHVALTEGRNREVRRMFEAVGLTVSRLIRTRYGQFLLPRGLKRGRWQELD 462 >UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=A9ITY6_BORPD Length = 588 Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 132/237 (55%), Positives = 176/237 (74%), Gaps = 3/237 (1%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 KL KVLA AG GSRRE+E +I AGRVSV+G+ A +G RV P ++R++G ++ R + Sbjct: 124 KLHKVLADAGIGSRREMEELITAGRVSVNGEPAHIGQRV--APSDQVRVNGKPVA-RPNT 180 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 ++ RV+ Y+KP GE+ + +DP GR +VF RLPKLR +W++VGRLD+NT GLL+FTT G Sbjct: 181 KKPPRVILYHKPAGEIVSHDDPGGRASVFARLPKLRTGKWLSVGRLDLNTEGLLIFTTSG 240 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 ++ANR+MHP EREYAVRV G++DDA + L G++LEDG AAF + + GG+G N+W Sbjct: 241 DMANRIMHPRYGTEREYAVRVLGEMDDATRKSLVEGIELEDGQAAFGALDYLGGDGSNRW 300 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 Y VTL EGRNREVRR++E+VGV VSRLIR R+GD+ LP+ L RG W ELD + L Sbjct: 301 YRVTLQEGRNREVRRMFESVGVTVSRLIRTRFGDLVLPRTLRRGRWEELDSSLVTAL 357 >UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=A6GNL7_9BURK Length = 458 Score = 264 bits (674), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 136/271 (50%), Positives = 190/271 (70%), Gaps = 4/271 (1%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 ++ KL KVLA +G GSRRE+E +I AGRVSV+ + A LG RV P ++R++G LI R Sbjct: 67 LAPKLHKVLADSGMGSRREMEELIVAGRVSVNAEPAHLGQRV--LPTDQVRVNGKLIQ-R 123 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 ++ + RVL Y+KP GE+ + +DP+GR TVF +LPK+ +WIAVGRLD NT GLLLFT Sbjct: 124 KNKSKPPRVLIYHKPAGEIVSMDDPQGRTTVFQKLPKISNGKWIAVGRLDFNTEGLLLFT 183 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 + GELANRLMHP EV+REYAVR+ G++ + + + L G+QLEDGPA F + +GGEG Sbjct: 184 SSGELANRLMHPRYEVQREYAVRILGELSEEQRQQLLTGIQLEDGPAKFLYVDAAGGEGA 243 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELD-LAQTNY 239 N+WY V L EGRNREVRR++EA + VSRLIR R+GDI +P L RG E++ L +Y Sbjct: 244 NRWYKVGLKEGRNREVRRMFEACNLTVSRLIRTRFGDIMMPSTLKRGRHMEMEALEAMSY 303 Query: 240 LRELVELPPETSSKVAVEKDRRRMKANQIRR 270 ++ L E++ + A+ +D++ + + +R Sbjct: 304 MQSLGLKVDESAQEGAIRRDKKNIGSKNNKR 334 >UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q31GA0_THICR Length = 317 Score = 263 bits (672), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 137/250 (54%), Positives = 174/250 (69%), Gaps = 5/250 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 EKLQK+LAR G GSRRE+E +I G V V+GK+A LGDR T LK+ + L+ Sbjct: 18 EKLQKILARGGFGSRREVEKLISQGLVKVNGKVATLGDRAFPTDTLKV--NDQLVKETRL 75 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 +Q +V+ Y KPEG++C+R D +GR T+F LP++ +RWI+VGRLD+NT GLL+ T + Sbjct: 76 EKQPTQVILYNKPEGQVCSRKDEKGRETIFTSLPRIINSRWISVGRLDINTSGLLILTNN 135 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTI-KFSGGE--G 179 GELANRLMHPS E+EREY+VRVFG+V D L L +GV+LEDG A F++I K E Sbjct: 136 GELANRLMHPSYEMEREYSVRVFGEVSDEILDRLKKGVKLEDGFAKFESIGKIPQQEEDS 195 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 INQWY V + EGRNREVRR+WE+ GVQVSRL+R RYG LP+ L RG L Q N Sbjct: 196 INQWYRVVIKEGRNREVRRIWESQGVQVSRLVRTRYGQFSLPRNLRRGKSEPLTWKQINQ 255 Query: 240 LRELVELPPE 249 L + V+LP E Sbjct: 256 LLKSVDLPEE 265 >UniRef50_Q1H048 Pseudouridine synthase n=4 Tax=Betaproteobacteria RepID=Q1H048_METFK Length = 383 Score = 258 bits (660), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 126/246 (51%), Positives = 174/246 (70%), Gaps = 3/246 (1%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 + ++L K+LA AG GSRRE+E++I +GR++++GK A++G V P +R+D + + Sbjct: 27 VPQRLHKLLALAGFGSRREMETLIASGRITINGKTAEVG--ASVVPSDVVRLDSRPLRLP 84 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E + +VL Y+KPEGE+ + +DPE R +VFD+LP++R +WIA+GRLD+NT GLL+FT Sbjct: 85 FEPE-LPQVLLYHKPEGEIVSHDDPENRASVFDKLPRIRNGKWIAIGRLDMNTSGLLIFT 143 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 T GELANR MHP EVEREYAVR+FG++ + ++ L+ G++L+DGPA F +I+ GGEG Sbjct: 144 TSGELANRFMHPRYEVEREYAVRIFGELTEGEMAQLTYGIELDDGPANFDSIRPQGGEGA 203 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N WY V L EGRNREVRRL+EA VSRLIRVR+G + LP L RG L + L Sbjct: 204 NHWYEVILREGRNREVRRLFEAFQKPVSRLIRVRFGPVNLPPRLKRGQMIHLGAKEVTAL 263 Query: 241 RELVEL 246 E EL Sbjct: 264 LEWAEL 269 >UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formigenes RepID=C3X1E1_OXAFO Length = 510 Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 134/245 (54%), Positives = 176/245 (71%), Gaps = 6/245 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA AG GSRR++E +I AGRVSV+G+ A +G R+ P ++R++G LI R+ Sbjct: 173 APKLHKVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRI--LPTDQVRLNGKLIQ-RK 229 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 A+ + RVL Y+KP GE+ +R+DPE RP+VFDRLP L+ ++W+AVGRLD NT GLLLFT Sbjct: 230 IAKSLPRVLTYHKPAGEIVSRDDPEKRPSVFDRLPLLKNSKWLAVGRLDFNTEGLLLFTN 289 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+LANRLMHP +EREYAVR G++++ + L GV L DG F I GGEG+N Sbjct: 290 SGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLLAGVDLGDGIGQFSKIVDGGGEGVN 349 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +WY VT+ EGRNREVRR++EAVG+ VSRLIR RYG + L + L RG W EL + N +R Sbjct: 350 KWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAVVLSQSLKRGRWDEL---EENAVR 406 Query: 242 ELVEL 246 L+ L Sbjct: 407 NLLRL 411 >UniRef50_D0L0G8 Pseudouridine synthase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0G8_HALNC Length = 369 Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 139/260 (53%), Positives = 176/260 (67%), Gaps = 3/260 (1%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++LQK+LA G GSRR IE I AG V ++G +A+LGD E L +R G I+V + Sbjct: 4 QRLQKILATQGLGSRRMIEGWISAGEVKLNGVVAQLGDVAEAGDVLDVR--GQKITVSDE 61 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 I RV+ Y+KPEGE+ + +DPEGRPTVF LP +R RWI VGRLD NT GLLL T D Sbjct: 62 TP-IRRVIIYHKPEGEITSTSDPEGRPTVFGSLPAIRQGRWITVGRLDFNTSGLLLATND 120 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRLMHPS ++ER YAVRV G + + +++ L+ VQL+DGPA F + +GG G+N+ Sbjct: 121 GELANRLMHPSHQIERTYAVRVLGGLTEDQVKQLTTEVQLDDGPAHFDQLSDAGGTGVNR 180 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 WY+VTL EGRNRE+RR+ EAVG VSRLIR+ Y IPLP L G +L + L + Sbjct: 181 WYHVTLREGRNREIRRMIEAVGAVVSRLIRISYAGIPLPPRLKPGRAQDLPPEMEDALVK 240 Query: 243 LVELPPETSSKVAVEKDRRR 262 LV L PET KV E +RR Sbjct: 241 LVGLRPETRRKVQDEDTKRR 260 >UniRef50_Q89AL1 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=RLUB_BUCBP Length = 247 Score = 251 bits (642), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 121/246 (49%), Positives = 169/246 (68%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M EK+QK+LAR G+GSRR IES+I++ V ++ ++ K+G R+ + K+ I+ + + Sbjct: 1 MCEKIQKILARHGYGSRRYIESLIKSHSVKINDEVVKVGQRISINVIQKVIINNNNYKPK 60 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + +VL Y KPEGE+CTR D R T+F++LPKL ARWI +GRLD+N+ GLLLFT Sbjct: 61 LNINKSLKVLLYNKPEGEICTRKDQRNRRTIFEKLPKLSNARWINIGRLDLNSSGLLLFT 120 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDGELA RL HPS +ER Y VRVFGQ + L+ L+ V+L DG A FK+I+F GEG Sbjct: 121 TDGELAYRLTHPSFNIERIYKVRVFGQFTENILKQLNVRVKLLDGYANFKSIQFKYGEGK 180 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+W+NV+L EGR+R VRR+WE +G QV++L+R+ Y + LPK L G W L+ + L Sbjct: 181 NKWFNVSLCEGRHRIVRRIWEKLGFQVNKLVRISYAHLTLPKTLFPGTWITLNKHDIDVL 240 Query: 241 RELVEL 246 + V L Sbjct: 241 CKKVNL 246 >UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=A4SY81_POLSQ Length = 587 Score = 249 bits (637), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 131/230 (56%), Positives = 161/230 (70%), Gaps = 3/230 (1%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 KL KVLA G GSRR++E +I GRVSV+G A +G R+ P ++RI+G + R+ Sbjct: 198 KLHKVLADVGMGSRRDMEDLIIQGRVSVNGLPAHIGQRI--GPTDQVRINGKPVH-RKIQ 254 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + RV+ Y+KP GE+ +++DPEGRPTVFDRLPK R RWIAVGRLD NT GLLLFTT G Sbjct: 255 TKPPRVIMYHKPAGEIVSQSDPEGRPTVFDRLPKPRQGRWIAVGRLDFNTEGLLLFTTSG 314 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 ELANRLMHP VEREYAVR+ G + L G+ L+DG A F + GGEG N+W Sbjct: 315 ELANRLMHPRYGVEREYAVRILGDLSQENTALLKSGITLDDGQAKFLRLAMGGGEGANRW 374 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELD 233 Y+V L+EGRNREVRR++EAVG VSRLIR RYG LP L RG W E++ Sbjct: 375 YHVALSEGRNREVRRMFEAVGHTVSRLIRTRYGIFLLPPRLRRGKWEEIE 424 >UniRef50_A5CX60 Pseudouridine synthase n=1 Tax=Candidatus Vesicomyosocius okutanii HA RepID=A5CX60_VESOH Length = 241 Score = 246 bits (628), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 123/245 (50%), Positives = 167/245 (68%), Gaps = 4/245 (1%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M+ +LQK++A AG+GSRR +E +IE GR+ V+ KIA +GD+ E+T +KI DG I++ Sbjct: 1 MANRLQKLIANAGYGSRRWVERLIEQGRIEVNNKIAIIGDKTEITSLVKI--DGRKINLS 58 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 EQ +V+ K G +C+ D +GR +V+ LPK +RWI VGRLD+NT GLLL T Sbjct: 59 RYVEQETKVIILNKQAGVICSNRDDKGRKSVYSLLPK--ESRWIMVGRLDLNTSGLLLVT 116 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 +G+LAN+LMHPS E++REYAVRV GQV + L+ L++GV +DG + F I FSGG+G Sbjct: 117 NNGDLANKLMHPSSEIDREYAVRVLGQVKNKDLKKLTQGVVFDDGFSKFNQITFSGGKGA 176 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+WY V L EG+ REVRRLWE +G +VSRLIR+R+G+I LP L + L Q L Sbjct: 177 NRWYKVVLREGKKREVRRLWEVLGFKVSRLIRIRFGEIRLPDNLKANQYDYLKTVQIKLL 236 Query: 241 RELVE 245 VE Sbjct: 237 FNAVE 241 >UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=C1DA59_LARHH Length = 703 Score = 246 bits (627), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 125/239 (52%), Positives = 178/239 (74%), Gaps = 5/239 (2%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +LQK LA AG GSRR+++ ++ AGRVS++G +A+LG RV PG K+R+D + +R Sbjct: 454 RLQKALALAGLGSRRDMDELVAAGRVSINGAVAELGARVR--PGDKVRVDSKPVLIR-WP 510 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 +++ RV+ Y+K EGE+ TR+DPEGR TVFDRLP+ R ++W+A+GRLDVNT GLL+FTT G Sbjct: 511 DRLPRVIVYHKQEGEIVTRDDPEGRTTVFDRLPQTRSSKWVAIGRLDVNTSGLLIFTTSG 570 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGG--EGIN 181 +LANR+ HPS EVEREYAVRV G++ ++++ + GVQL+DGPA+F+ I+ + +N Sbjct: 571 DLANRMTHPSFEVEREYAVRVLGKLTPEQMKETTAGVQLDDGPASFQFIREDDDKEDSVN 630 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 WY V + EGRNREVRR++E G+ VSRL+RVR+G + LP L RG + EL+ + + L Sbjct: 631 HWYRVGIREGRNREVRRMFEHFGLTVSRLMRVRFGIVTLPSRLKRGQFYELNELEVSKL 689 >UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria RepID=Q12AB3_POLSJ Length = 544 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 127/232 (54%), Positives = 167/232 (71%), Gaps = 3/232 (1%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA+AG GSR E+E +I GR+SV+ + A +G R++ G ++++G I VR Sbjct: 96 TPKLHKVLAQAGLGSRLEMEQLILEGRISVNAEPAHIGQRIQF--GDTVKVNGKPIRVRI 153 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 RV+AY+KP GE+ T +DP+ RPTVF RLPKL +W +VGRLD+NT GLLL T+ Sbjct: 154 DPPP-PRVIAYHKPSGEVVTHDDPQNRPTVFRRLPKLFQGKWQSVGRLDLNTEGLLLLTS 212 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 GELAN+LMHP +EREYAVRV G + + + + L GV L+DG A F +I+ GGEG N Sbjct: 213 SGELANKLMHPRFGLEREYAVRVLGALSNEEKKRLLEGVTLDDGVAQFSSIEAGGGEGAN 272 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELD 233 WY VT++EGRNREVRR++EAVG VSRLIR+RYG + LP+GL RG + ELD Sbjct: 273 CWYRVTISEGRNREVRRMFEAVGHAVSRLIRIRYGAMLLPRGLKRGAFVELD 324 >UniRef50_Q5F8V3 Pseudouridine synthase n=21 Tax=Proteobacteria RepID=Q5F8V3_NEIG1 Length = 350 Score = 244 bits (623), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 124/235 (52%), Positives = 170/235 (72%), Gaps = 4/235 (1%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKVLA +G GSRRE+E I G V+V+GK A+LGD+V TP + + G +I ++ Sbjct: 98 ERLQKVLAASGVGSRREMEEWINNGWVTVNGKTAQLGDKV--TPDDHVTVKGSIIKLK-W 154 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 A+++ R++ YYK EGE+ +R+DP+GR ++FDRLP+ +RW+A+GRLD+NT GLL+ TT Sbjct: 155 ADRLPRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTS 214 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLS-RGVQLEDGPAAFKTIKFSGGEGIN 181 GEL R HPS EVEREYAVRV G + ++R L+ GV LEDG A + I GGEG N Sbjct: 215 GELVQRFAHPSFEVEREYAVRVLGGLTTEQMRSLTEEGVMLEDGLAKVERIYEQGGEGAN 274 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 +WYN+ + EGRNREVRR++E+ G+ VSRL+RV +G I LP L RG + EL+ A+ Sbjct: 275 KWYNIVIKEGRNREVRRIFESQGLTVSRLVRVAFGPIGLPNRLKRGQFYELNPAE 329 >UniRef50_B4RM91 Pseudouridine synthase n=8 Tax=Betaproteobacteria RepID=B4RM91_NEIG2 Length = 416 Score = 244 bits (622), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 124/235 (52%), Positives = 170/235 (72%), Gaps = 4/235 (1%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKVLA +G GSRRE+E I G V+V+GK A+LGD+V TP + + G +I ++ Sbjct: 164 ERLQKVLAASGVGSRREMEEWINNGWVTVNGKTAQLGDKV--TPDDHVTVKGSIIKLK-W 220 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 A+++ R++ YYK EGE+ +R+DP+GR ++FDRLP+ +RW+A+GRLD+NT GLL+ TT Sbjct: 221 ADRLPRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTS 280 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLS-RGVQLEDGPAAFKTIKFSGGEGIN 181 GEL R HPS EVEREYAVRV G + ++R L+ GV LEDG A + I GGEG N Sbjct: 281 GELVQRFAHPSFEVEREYAVRVLGGLTTEQMRSLTEEGVMLEDGLAKVERIYEQGGEGAN 340 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 +WYN+ + EGRNREVRR++E+ G+ VSRL+RV +G I LP L RG + EL+ A+ Sbjct: 341 KWYNIVIKEGRNREVRRIFESQGLTVSRLVRVAFGPIGLPNRLKRGQFYELNPAE 395 >UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WE21_VEREI Length = 520 Score = 242 bits (617), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 126/232 (54%), Positives = 166/232 (71%), Gaps = 3/232 (1%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA+AG GSR E+E +I GR+SV+ + A +G R++ G +++++G I R Sbjct: 170 TPKLHKVLAQAGLGSRLEMEQLILEGRISVNNEPAHIGQRIQF--GDQVKVNGKPIRYRI 227 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 RV+AY+KP GE+ + +DP RPTVF RLP+L +W +VGRLD+NT GLLL T+ Sbjct: 228 DPPP-ARVIAYHKPVGEVVSHDDPHNRPTVFRRLPRLVQGKWQSVGRLDLNTEGLLLLTS 286 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 GELAN+LMHP +EREYAVRV G + + + + L GV+L+DG A+F TI+ GGEG N Sbjct: 287 SGELANQLMHPRFGLEREYAVRVLGALSNEEKQKLLDGVRLDDGIASFGTIEDGGGEGAN 346 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELD 233 WY VT+ EGRNREVRR+ EAVG VSRLIR+RYG + LP+GL RG W ELD Sbjct: 347 CWYRVTIAEGRNREVRRMLEAVGHAVSRLIRIRYGAMVLPRGLKRGTWLELD 398 >UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae RepID=C5CXG1_VARPS Length = 604 Score = 240 bits (613), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 128/232 (55%), Positives = 172/232 (74%), Gaps = 3/232 (1%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 S KL KVLA+AG GSR E+E++I GR+SV+ + A +G R++ G +++I+G I R Sbjct: 197 SPKLHKVLAQAGLGSRLEMEALILQGRISVNNEPAHIGQRIQY--GDQVKINGKPIRYR- 253 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 A RV+AY+KP GE+ T +DP+ RPTVF +LP+L+ +W +VGRLD+NT GLLLF++ Sbjct: 254 IAPPPPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPRLQQGKWQSVGRLDLNTEGLLLFSS 313 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+LAN+LMHP +EREYAVRV G ++ + + L GV+L+DG A F TI+ GGEG N Sbjct: 314 SGDLANQLMHPRFGLEREYAVRVLGALNAEEKKKLLEGVRLDDGMAQFGTIEEGGGEGSN 373 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELD 233 WY VT++EGRNREVRRL+E+VG VSRLIR+RYG + LP+GL RG W ELD Sbjct: 374 HWYRVTISEGRNREVRRLFESVGHAVSRLIRIRYGAMVLPRGLKRGAWMELD 425 >UniRef50_Q87BI2 Ribosomal large subunit pseudouridine synthase B n=22 Tax=Bacteria RepID=RLUB_XYLFT Length = 476 Score = 236 bits (603), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 139/251 (55%), Positives = 167/251 (66%), Gaps = 8/251 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 + E+L KVLA+AG GSRR +E I G + V+G IA+LG + V G KI +DG V Sbjct: 25 LEERLHKVLAQAGLGSRRALEQRISNGLIKVNGDIAQLG--MSVKSGDKIELDGRSF-VA 81 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + RVL Y KPEGE+ TR DPEGRPTVF+ LP L+GARWIA+GRLD+NT GLLL T Sbjct: 82 SALTEPARVLIYNKPEGEVTTREDPEGRPTVFETLPVLKGARWIAIGRLDINTTGLLLLT 141 Query: 121 TDGELANRLMHPSREVEREYAVRVFG-----QVDDAKLRDLSRGVQLEDGPAAFKTIKFS 175 TDGELAN +MHPS E+EREY VRV V D L L+RGV LEDG A F TI+ Sbjct: 142 TDGELANAMMHPSSEIEREYVVRVRSPEGEEHVQDELLEQLTRGVMLEDGTAKFDTIERI 201 Query: 176 GGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLA 235 G + W+ V + EGRNREVRRLWE+ G QVSRL R RYG + LP+ L RG TEL Sbjct: 202 GNTDSHDWFRVVVKEGRNREVRRLWESQGCQVSRLKRTRYGSVLLPRELLRGQSTELPKT 261 Query: 236 QTNYLRELVEL 246 Q LR ++L Sbjct: 262 QVEALRTQLKL 272 >UniRef50_B6BUN1 Pseudouridine synthase n=1 Tax=beta proteobacterium KB13 RepID=B6BUN1_9PROT Length = 257 Score = 230 bits (587), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 108/234 (46%), Positives = 164/234 (70%), Gaps = 8/234 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRV---EVTPGLKIRIDGHLISV 59 E++QK LA G GSRR IE +I+ +++V+ K LG V E+ I I+G I Sbjct: 15 ERIQKFLANMGMGSRRSIEELIKQKKITVNQKPIDLGHMVYGNEI-----IHINGRRIYF 69 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 + + ++ R++ Y+KPEGE+ + +DP+ + TVF +LPK++ +WI++GRLD+NT GLLL Sbjct: 70 KNAEKRESRLIIYHKPEGEIVSHSDPKHQKTVFQKLPKVKNGKWISIGRLDINTSGLLLI 129 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG+LAN +MHPS++++REY+VR+ G+V + + ++ +GV+L+DG A T + +GGEG Sbjct: 130 TNDGKLANHMMHPSQQIDREYSVRILGEVTEEIINNIRKGVKLDDGVAHVDTFEHTGGEG 189 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELD 233 NQW+ + L EGRNRE+RRL E+ ++VSRLIR RYG + LP L RG + EL+ Sbjct: 190 ANQWFRIILKEGRNREIRRLVESQNLKVSRLIRTRYGPLNLPSHLKRGQFMELE 243 >UniRef50_P42395 Ribosomal large subunit pseudouridine synthase B n=5 Tax=Buchnera aphidicola RepID=RLUB_BUCAP Length = 257 Score = 229 bits (585), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 116/256 (45%), Positives = 173/256 (67%), Gaps = 5/256 (1%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRV-EVTPGLKIRIDGHLISV 59 M+ K+QK+L+ G+GSRR IE +I+ G++S++G+ A +G + + PG +I ID I V Sbjct: 1 MTAKIQKILSDLGYGSRRFIECMIKCGKISINGEKAIIGQYLNKKNPG-EILIDKKKIIV 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 + + + + +VL Y KP GE+CTR+D + R TVFD+LPKL RW++VGRLD+NT GLLLF Sbjct: 60 KRN-KNLPKVLIYNKPIGEVCTRDDFQKRLTVFDKLPKLNLNRWVSVGRLDINTKGLLLF 118 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTI--KFSGG 177 T DG LAN+LMHP ++EREY +R+FG+++ K+ L +GV++ G +FK I + Sbjct: 119 TNDGTLANKLMHPRSQIEREYNIRIFGEMNKNKINILRKGVKIIHGYVSFKEIVPLYDKK 178 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 EG N+W+ L EG+NRE+R +++++ QV++LIRVRYG+I LPK L G W L+ Sbjct: 179 EGKNKWFKGILCEGKNREIRLMFKSIQCQVNQLIRVRYGNIILPKNLKEGQWMMLNSIFL 238 Query: 238 NYLRELVELPPETSSK 253 L L+ E +K Sbjct: 239 KKLYNLINFDKEIINK 254 >UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVQ2_DICNV Length = 266 Score = 228 bits (580), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 117/231 (50%), Positives = 158/231 (68%), Gaps = 7/231 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 ++++QK LA G GSRR+IE+ I+ GR+ VDG++A+LG ++ + ++ +DG + + Sbjct: 8 AQRIQKYLAARGVGSRRQIETWIKEGRLKVDGRVAELGQKI--SGNERLSLDGKPLRIAV 65 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + +L Y+KP GE+CTR DPEGR +VF LPK+ RW+A+GRLD+NT GLLLFT Sbjct: 66 EHKNPHMILMYHKPAGEICTRKDPEGRVSVFQHLPKISHGRWVAIGRLDLNTSGLLLFTN 125 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTI-----KFSG 176 DG LAN+LMHPS E+EREY VRV G+V + L L +G+ L+DG A F I Sbjct: 126 DGALANQLMHPSAEIEREYWVRVAGEVTEEMLTALRQGIPLDDGLARFTEICPLKTLHED 185 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRG 227 N++++VTL EGRNREVRRLWEAVG +VSRL R+RYG I LP L G Sbjct: 186 DTQFNRYFSVTLKEGRNREVRRLWEAVGCKVSRLKRIRYGTISLPPSLSAG 236 >UniRef50_Q605S3 Pseudouridine synthase n=1 Tax=Methylococcus capsulatus RepID=Q605S3_METCA Length = 231 Score = 226 bits (576), Expect = 8e-58, Method: Compositional matrix adjust. Identities = 113/199 (56%), Positives = 143/199 (71%) Query: 52 IDGHLISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDV 111 ++GHL+++ + + RVL Y+KP GEL +R DPEGRP +F RLP+L RW+AVGRLDV Sbjct: 2 LNGHLVNLEKRLQAFTRVLLYHKPVGELVSRRDPEGRPLIFSRLPRLELGRWVAVGRLDV 61 Query: 112 NTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKT 171 NT GL+L T +GELA+RLMHPS VEREYAVR+ G V +A + L GVQLEDGPA F++ Sbjct: 62 NTQGLILLTNNGELAHRLMHPSHAVEREYAVRILGTVSEAVIERLLDGVQLEDGPARFES 121 Query: 172 IKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTE 231 + +GGEG N+W++V + EGRNR VRRLWE+ + VSRLIRVRYGDI LP L G E Sbjct: 122 VAEAGGEGANRWFHVVVREGRNRLVRRLWESQNLVVSRLIRVRYGDIVLPPRLRAGASIE 181 Query: 232 LDLAQTNYLRELVELPPET 250 L+ + L V LPP T Sbjct: 182 LEGEALDGLLRSVGLPPVT 200 >UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6G3_MAGSM Length = 332 Score = 179 bits (455), Expect = 7e-44, Method: Compositional matrix adjust. Identities = 108/259 (41%), Positives = 163/259 (62%), Gaps = 10/259 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVR 60 + +LQK LA G SRRE E I+ GRVS++G++ +LG V+V ++ +DG L++ + Sbjct: 69 APRLQKWLAEQGLCSRREGEVWIQEGRVSINGEVVTELG--VKVAKRDRVAVDGQLVTPQ 126 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 S + + +KP+ +CTR+DP+GR T+FD + +R I VGRLD+N+ GL++ T Sbjct: 127 RSRDT---AIILHKPKSIICTRSDPQGRRTIFDLIENHGSSRLITVGRLDINSEGLIILT 183 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDL-SRGVQLEDGPAAFKTIKFSGG-- 177 +DG+LA+ LMHPSREV R Y V+ G + ++L + + GV+LEDGP I G Sbjct: 184 SDGQLAHGLMHPSREVPRVYRVKTHGILLASQLEQIRTVGVRLEDGPTGPLEIVLDRGRE 243 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 +G N WY +TL EGRNREVRR+++ G+QV+RL+RV YG I L P G W + + + Sbjct: 244 QGNNSWYTITLREGRNREVRRIFDHFGLQVARLLRVGYGGISLGNLEP-GAWRPVTVDEW 302 Query: 238 NYLRELVELPPETSSKVAV 256 N L+++ + P S A+ Sbjct: 303 NMLQKISKRPIPGESAQAI 321 >UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadales RepID=B3E7C4_GEOLS Length = 274 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 114/283 (40%), Positives = 163/283 (57%), Gaps = 19/283 (6%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISV 59 M E+LQK+++ AG SRR E +I AGRV+V+G++ +LG + + L I +DG + Sbjct: 1 MIERLQKIISAAGITSRRAAEEMILAGRVTVNGQVVTELGSKADPAKDL-IALDGQPV-- 57 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 + AE VL +KP G + + DP+GR V + L K G R VGRLD N+ GLLL Sbjct: 58 -KPAETFYYVL-LHKPAGYVTSLKDPQGRQLVTE-LVKDVGERLFPVGRLDYNSEGLLLL 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG ANRLMHP +V++EY VRV G++D +++ L+ GV+LEDGP T++ + Sbjct: 115 TNDGAWANRLMHPRHQVDKEYHVRVRGKIDPQQIKKLADGVELEDGPTGATTVRLLKNDQ 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 N W +VT+ EGRNR+VRR+ AVG+ V RL R+RYG++ L GL G + L + Sbjct: 175 SNDWLSVTIREGRNRQVRRMCAAVGLFVVRLRRIRYGNLTL-GGLQPGEYRLLSREEAQA 233 Query: 240 LRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGR 282 L + PP K R + A ++ + SQ G R Sbjct: 234 L----DAPPPV-------KQREQRMAAPVKSSTTPQSQTPGKR 265 >UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q24V73_DESHY Length = 257 Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 108/250 (43%), Positives = 151/250 (60%), Gaps = 15/250 (6%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRE 61 E+LQKVLA+AG SRR E II GRV V+G++ + LG +V T +I +DG L+S+ + Sbjct: 16 ERLQKVLAQAGIASRRHAEEIILQGRVKVNGEVIRTLGTKVVSTD--RIVVDGRLLSIPQ 73 Query: 62 SAEQICRVLAYY---KPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 + AYY KP G + + DP+GR TV + +PK+ R VGRLD +T GLLL Sbjct: 74 ND------YAYYLLHKPTGYITSVTDPQGRKTVMELMPKI-PRRVYPVGRLDYDTSGLLL 126 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIK--FSG 176 T DG+LA+RLMHPS VE+ Y V V ++ + L+ L +GV LEDG A I+ Sbjct: 127 LTNDGDLAHRLMHPSYGVEKTYRVEVGEKIPEQALKRLEKGVLLEDGKTAPARIREVSPK 186 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 G G Y +T+ EGRNR+VRR+++AVG +S L R+R+G + L L G + L + Sbjct: 187 GRGSLPTYEITIHEGRNRQVRRMFKAVGFPLSTLKRLRFGPLELDPSLAPGAFRTLSKTE 246 Query: 237 TNYLRELVEL 246 +LR V+L Sbjct: 247 IQHLRRAVKL 256 >UniRef50_UPI0000D52F9C putative ribosomal large subunit pseudouridine synthase B (Pseudouridylate synthase) (Uracil hydrolyase) n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F9C Length = 242 Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 93/230 (40%), Positives = 137/230 (59%), Gaps = 6/230 (2%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +LQK+LARAG+GSRR E II +G+V V+G++AKLG V +I+I + E Sbjct: 5 RLQKILARAGYGSRRGCEEIISSGKVIVNGEVAKLG--CVVNSDDEIKIGSKKV---EFI 59 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFTTD 122 + R+ KP G +C++ +++D +PK+ + + VGRLD N+ GL+ FT D Sbjct: 60 DVQTRLFVLNKPTGVICSKKTEGNLRSIYDLIPKIDNEKNLMIVGRLDANSSGLIFFTND 119 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G L+ + HPS +REY VR G D+ ++ RG+++++ I N+ Sbjct: 120 GNLSEFIAHPSNLFDREYLVRARGHFDEEIKENMLRGIKIDNQLLRLSDIVDGDKTNSNR 179 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 WY V L GRNRE+R+++E+ G+QVSRL RVR+G I LPKGL G W EL Sbjct: 180 WYTVCLLTGRNREIRKIFESQGLQVSRLKRVRFGPIFLPKGLKEGDWQEL 229 >UniRef50_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K31 RepID=B0T1Z8_CAUSK Length = 501 Score = 162 bits (409), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 102/247 (41%), Positives = 143/247 (57%), Gaps = 15/247 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ K+LARAG SRR +E +IE GRV+++G++ ++V PG + +DG +I E+ Sbjct: 25 RVAKMLARAGVASRRAVERLIEDGRVALNGEVLTT-PAIKVRPGDILTVDGKMIDEPEA- 82 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 RV Y+KP G + T NDP+ RPTVF LP+ R I+VGRLD+N+ GLLL T DG Sbjct: 83 ---TRVFRYHKPSGLMTTHNDPKQRPTVFQALPRDL-PRLISVGRLDLNSEGLLLLTNDG 138 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED---GP--AAFKTIKFSGGE 178 L+ L P R Y R FG AKL L G +E GP A + G Sbjct: 139 ALSRALEMPQNAWVRRYRARAFGDTTQAKLDKLKDGCTVEGVRYGPIEARLDKAQEKAGG 198 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 G N W +TL+EG+NREVRR+ E++G++V+RLIR+ YG L LP +++ Sbjct: 199 GKNIWITLTLSEGKNREVRRVLESIGLKVNRLIRLSYGPFALGTLLP----GQVEEVGPR 254 Query: 239 YLRELVE 245 +REL+E Sbjct: 255 VIRELLE 261 >UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae RepID=B4RA72_PHEZH Length = 521 Score = 160 bits (404), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 109/278 (39%), Positives = 159/278 (57%), Gaps = 22/278 (7%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 E++ K+LAR+G GSRR++E +I GRV+++G++ V+V PG + +DG ++ E Sbjct: 150 GERIAKLLARSGVGSRRDVERLIAEGRVAINGQVLTT-PAVKVEPGDILTVDGAVVGEPE 208 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 RV Y+KP G + T DP+GRPTVF+ LP+ R I+VGRLD+N+ GLLL T Sbjct: 209 P----VRVFRYHKPVGLVTTHKDPQGRPTVFEALPEGL-PRLISVGRLDLNSEGLLLLTN 263 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF------S 175 DG LA L P+ V R Y R G++ +L L G+ +E + I+ Sbjct: 264 DGGLARALELPATGVVRRYRARAHGRITQERLDTLKDGITVEG--VRYGAIEARLDKAKE 321 Query: 176 GGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLA 235 G +G N W VTL EG+NREVRR+ EA+G++V+RLIR+ YG P L E++ Sbjct: 322 GHQGANLWLTVTLQEGKNREVRRVLEALGLKVNRLIRLSYG----PFALGTLDVGEIEEV 377 Query: 236 QTNYLRELVE--LPPETSSKVAVEKDRRRMKANQIRRA 271 +RE +E +PPE K ++ + R A + RRA Sbjct: 378 GPRVIREQLEGHIPPENMPK--GDRPQYRSPARKSRRA 413 >UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=C8WXC0_ALIAD Length = 273 Score = 159 bits (403), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 107/234 (45%), Positives = 141/234 (60%), Gaps = 12/234 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQKVLA AG SRR+ E +I AGRVSVDG+I +LG +V+ + +I +DG I + + Sbjct: 2 ERLQKVLAHAGVASRRKCEELILAGRVSVDGEIVTQLGAKVDPS-RQRIAVDGVPIELEQ 60 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 VL KP L T +DP GR TV LP +R R VGRLD +T GLLLFT Sbjct: 61 PV-----VLVLNKPVAYLSTVSDPLGRRTVMQLLPPIR-ERVYPVGRLDYDTSGLLLFTN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG---PAAFKTIKFSGGE 178 DGEL RL+HPSRE+E+ Y V V G VD R L GV+LEDG PA + ++ + E Sbjct: 115 DGELTQRLLHPSREIEKVYRVSVRGIVDRETRRALMEGVELEDGVTAPAKVEVLRQADRE 174 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 ++ + EGRNR+VRR++E +G+ V RL R+ +G + L L G W L Sbjct: 175 DGVAVVHLAIHEGRNRQVRRMFERLGLPVLRLKRIAFGPVSL-GHLKTGEWRAL 227 >UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UFV9_9RHOB Length = 354 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 118/294 (40%), Positives = 158/294 (53%), Gaps = 25/294 (8%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ KVLA AG SRRE E +IE GRVSV+G+I + +V G +R+DG I R Sbjct: 17 ERIAKVLAHAGIASRREAERLIEKGRVSVNGEILRT-PAFKVMAGDDVRVDGESIGQRPP 75 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 RV Y+KP G L T +DP+GR TVF LP+ G R I+VGRLD+N+ GLLL T D Sbjct: 76 ----TRVWRYHKPVGLLTTHSDPQGRDTVFQTLPQDMG-RVISVGRLDLNSEGLLLLTND 130 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED---GPAAFKTIKFSGGEG 179 GELA L PS R Y VR +G D L +L G ++ GP + +G Sbjct: 131 GELARVLELPSTGWTRRYRVRAYGNASDKALAELENGTVVDGVVYGPVEVTVDRRTGA-- 188 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLA---- 235 N W V + EG+NREVR++ ++VG+ V+RL+RV YG L L RG +E L+ Sbjct: 189 -NVWLTVGIKEGKNREVRKVLQSVGLTVNRLMRVAYGPFQL-GSLKRGEISESKLSVLRD 246 Query: 236 QTNYLREL----VELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSG 285 Q L L + L P ++K D R A +A + H + G R+G Sbjct: 247 QLGKLYPLDTDGLPLKPGETAK----PDTRTGTAKAKPKANRPHQKSGGKPRAG 296 >UniRef50_Q2G8T2 Pseudouridine synthase n=5 Tax=Sphingomonadales RepID=Q2G8T2_NOVAD Length = 270 Score = 156 bits (394), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 100/255 (39%), Positives = 138/255 (54%), Gaps = 27/255 (10%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPG-----LK-IRIDGHL 56 +++ K+LARAG SRRE+E +IE GRV K+GD V TP LK + +DG Sbjct: 29 DRIAKLLARAGIASRREVERMIEEGRV-------KIGDEVVTTPATLLTSLKGVSVDGKP 81 Query: 57 ISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGA------RWIAVGRLD 110 ++ R+ ++KP G + DP GRPT++ LR A R + VGRLD Sbjct: 82 VAPMAPP----RLFRFHKPSGLITAERDPTGRPTIYT---ALRNALPQGTPRVMPVGRLD 134 Query: 111 VNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFK 170 VNT GLLL T DGEL L PS + R Y R FG + A+L +L G++++ Sbjct: 135 VNTEGLLLMTNDGELKRALELPSTGIPRTYRARTFGDISQARLEELMEGIEIDGVRYGSI 194 Query: 171 TIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWT 230 G N+W +TLTEG+NREVRR+ E +G+QVSRL+R +YG L LPRG Sbjct: 195 NANLERSAGRNKWIELTLTEGKNREVRRVLEHLGLQVSRLLRTKYGPFEL-ADLPRGAAE 253 Query: 231 ELDLAQTNYLRELVE 245 E+ R+ ++ Sbjct: 254 EIPQVMVERFRKTLK 268 >UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C4P7_9PLAN Length = 352 Score = 156 bits (394), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 111/300 (37%), Positives = 160/300 (53%), Gaps = 25/300 (8%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK LA G GSRR E IE GRVSVDG I +LG +++ I +DG + + Sbjct: 24 RLQKFLAATGLGSRRHCEEYIETGRVSVDGDVITELGAKIDPETQF-IEVDGERVRL--- 79 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 Q R KP G LCT NDP GR V D P G R VGRLD N+ GL+L T D Sbjct: 80 --QPRRYYLLNKPSGFLCTNNDPAGRRRVVDLFPN-DGQRLFTVGRLDENSEGLILVTND 136 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA RL HP V R Y V+V G KL +L +GV+ ++G +K+ +G + Sbjct: 137 GELAQRLAHPRYRVARTYHVQVVGNPPREKLDELRKGVRFKEGVFRVSGLKYLKKQGKSA 196 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + +TL EG+NRE+RR+ +G +V +L+R+R+G + L K L G L + LR+ Sbjct: 197 FLELTLHEGQNREIRRMMARIGHKVIQLVRIRFGPLNLGK-LKTGESRRLSDTELKKLRQ 255 Query: 243 LV--ELPPETSSKVAVEKDRRRMKANQIRRAVKRHS-------------QVSGGRRSGGR 287 L+ + P+ + +K+ K R++V + S ++SGG+++GG+ Sbjct: 256 LLNEKHSPDIRHRKG-KKNAAPAKTRAPRKSVGKRSGERGAAAGKSVSERISGGKKTGGK 314 >UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q3J464_RHOS4 Length = 508 Score = 156 bits (394), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 95/216 (43%), Positives = 130/216 (60%), Gaps = 6/216 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ KVL+RAG SRR+ E +IE GR++V+G+ + V P +I +DG ++ E Sbjct: 8 ERIAKVLSRAGIASRRDAERMIELGRIAVNGRTID-SPALNVGPKDRITVDGQPLAPPEP 66 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 A R+ YYKPEG + + +D +GR TVFD LP+ R ++VGRLD+N+ GLLL T D Sbjct: 67 A----RLWLYYKPEGLVTSASDEKGRETVFDHLPEGM-PRVMSVGRLDLNSEGLLLLTND 121 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GEL RL PS R+Y VRV G DA L L +G+ +E T+ +G N Sbjct: 122 GELKRRLELPSTGWLRKYRVRVKGNPTDADLEPLRKGITVEGESFQPMTVSLDRVQGANA 181 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI 218 W V L EG+NRE+RR A+G+ V+RLIRV YG Sbjct: 182 WLTVGLREGKNREIRRAMSALGLTVNRLIRVSYGPF 217 >UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae RepID=A0JV58_ARTS2 Length = 406 Score = 156 bits (394), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 98/218 (44%), Positives = 126/218 (57%), Gaps = 6/218 (2%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQKV+A AG SRR E +I GRV VDGK+ +LG RV+ + I +DG I + E+ Sbjct: 169 RLQKVMASAGVASRRVCEEMISEGRVEVDGKVVTELGVRVDPKTAV-IHVDGLRIQLDEN 227 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + + KP+G + T DP+GRP + D + G R VGRLDV T GLLL T D Sbjct: 228 ----MVYMVFNKPKGVVSTMEDPDGRPCISDFVRNTHGERLFHVGRLDVATEGLLLLTND 283 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRL HPS EV + Y V+V G L GV+LEDG A+ + K + Sbjct: 284 GELANRLTHPSYEVPKTYLVQVRGPFPQGIGAQLKAGVELEDGMASVDSFKLVDSTPGHV 343 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 V L G+NR VRRL++AVG V RL+RV+ G I L Sbjct: 344 LIEVVLHSGKNRIVRRLFDAVGFPVLRLVRVKVGPIGL 381 >UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3U4L2_9BACT Length = 420 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 103/247 (41%), Positives = 143/247 (57%), Gaps = 10/247 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDG-HLIS 58 M +LQK++A G SRR+ E +I +GRV+++G + K LG +V+ +++DG HL Sbjct: 1 MDVRLQKLIAGTGLASRRKAEELITSGRVTINGSVVKELGTKVDPARD-HVKVDGKHL-- 57 Query: 59 VRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 A Q L KP+ + T +DPEGRPTV D L + R VGRLD ++ GL+L Sbjct: 58 ---RAAQPYVYLILNKPKNVMSTLDDPEGRPTVKDLLHGVT-VRVFPVGRLDFDSEGLML 113 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T G+LA L+HP V + Y ++V G +DDAK+ L RGV+LEDG A +K Sbjct: 114 LTNHGDLAQALLHPRYHVPKTYLIKVKGVLDDAKIEALERGVKLEDGFTAPAKVKKVSRA 173 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 N W VT+ EGR +V+R+ EAVG V +L+RVR G + L PR + L + N Sbjct: 174 ESNSWLEVTIHEGRKHQVKRMVEAVGHSVIKLVRVRMGPLLLGDLAPR-EYRFLTDREAN 232 Query: 239 YLRELVE 245 LRELVE Sbjct: 233 RLRELVE 239 >UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U325_9PROT Length = 387 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 100/233 (42%), Positives = 134/233 (57%), Gaps = 11/233 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 SE++ K LARAG SRR+ E I GRV VDG + +P + + D ++ + Sbjct: 8 SERISKRLARAGLCSRRDAERWIAEGRVKVDGVML-------TSPAVNVDDDSVILVDEK 60 Query: 62 SAEQI--CRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 +I R+ Y+KP+G + + DPEGR TVFDRLPK R + VGRLD+++ GLLL Sbjct: 61 PLPEIEPPRLWRYHKPDGLVTSNRDPEGRSTVFDRLPKDL-PRVVTVGRLDIDSEGLLLL 119 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG LA L PS R Y VRVFG +D+AKL +L +GV++E + Sbjct: 120 TNDGGLARYLELPSTGWVRRYRVRVFGPLDEAKLDNLKKGVRIEGVEYGPIEVTIDKATR 179 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 N W V L EG+NRE+RR+ E VG+ VSRLIR YG L + +P GG E+ Sbjct: 180 TNSWLTVALREGKNREIRRVMEHVGLTVSRLIRTTYGPFQLGE-VPPGGVEEI 231 >UniRef50_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris MCS10 RepID=Q0AS26_MARMM Length = 372 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 97/219 (44%), Positives = 129/219 (58%), Gaps = 6/219 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 SE++ K LARAG SRRE+E +IE GRV VDGK +VT I +DG I Sbjct: 8 SERIAKFLARAGVASRREVERMIEGGRVKVDGKTLDT-PAFKVTGSEHIEVDGKRIEP-P 65 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 +A ++ R Y+KP+G + T DPEGR TVFD +PK G R I++GRLD+ + GLLL T Sbjct: 66 AATKLWR---YHKPDGLVTTHADPEGRETVFDAIPKDIG-RVISIGRLDLTSEGLLLLTN 121 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG LA L PS R Y R FG + ++ L+ L GV +E ++ G N Sbjct: 122 DGALARALELPSTGWTRRYRARAFGSISESALKILRAGVTVEGIKYGPMEVEVERETGSN 181 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 W V + EG+NREVR+ +AVG++V+RLIR+ YG L Sbjct: 182 IWLEVGIREGKNREVRKALDAVGLRVNRLIRIAYGPFQL 220 >UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693918 Length = 249 Score = 153 bits (387), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 101/233 (43%), Positives = 141/233 (60%), Gaps = 13/233 (5%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLK-IRIDGHLIS 58 M E+LQKVLA AG SRR+ E II AGRV V+ K+ + LG V+V P I++DG I Sbjct: 1 MEERLQKVLAAAGVASRRKCEEIILAGRVEVNDKVVSTLG--VKVNPHQDVIKVDGRAI- 57 Query: 59 VRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 ++ E+I + + KP+G + + +DPEGR V D L ++ R VGRLD +T GLL+ Sbjct: 58 --QNQEKIY--ILFNKPKGVITSVSDPEGRRVVGDFLKGIK-ERVYPVGRLDYDTEGLLI 112 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFS--G 176 T DGE AN + HP V + Y V G + L L GV+LEDG A +++ Sbjct: 113 LTNDGEFANMVTHPRHHVSKTYHATVKGVPHGSVLEKLREGVKLEDGMTAPAEVEYHDID 172 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGW 229 + ++T+ EG+NR+VRR++EAVG V+RL RV++G IPL GLPRG + Sbjct: 173 PDKKQSVISITIYEGKNRQVRRMFEAVGYPVTRLKRVKFGSIPLV-GLPRGKF 224 >UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organisms RepID=A0NV51_9RHOB Length = 520 Score = 153 bits (387), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 101/230 (43%), Positives = 130/230 (56%), Gaps = 7/230 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ KV+AR G SRRE E IE GRV ++GK+ V VTP K+ +DG + +RE Sbjct: 103 ERIAKVMARVGLCSRREAEVWIENGRVELNGKLLTT-PAVTVTPDDKVVVDGQPLPMRER 161 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R+ Y+KP G + T DPEGRPTVF+RLP R + VGRLD+NT GLLL T D Sbjct: 162 ----TRLWLYHKPRGLVTTNKDPEGRPTVFERLPDDL-PRVLTVGRLDINTEGLLLLTND 216 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA L P+ R Y VR FG+V L L G+ +E +G N Sbjct: 217 GGLARVLELPATGWLRRYRVRAFGKVTQPDLDTLKDGIAIEGVLYGAIEATLDKEQGNNV 276 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 W V L EG+NREV+R+ E +G+ V+RLIR+ YG L LP G E+ Sbjct: 277 WMTVGLREGKNREVKRVLEHLGLAVNRLIRLSYGPFQL-MDLPEGDVREI 325 >UniRef50_C6XQT2 Pseudouridine synthase n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XQT2_HIRBI Length = 508 Score = 152 bits (384), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 94/220 (42%), Positives = 132/220 (60%), Gaps = 10/220 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ K LA AG SRRE E +IE G V+V+G++ +VT KI ++G + Sbjct: 34 ERIAKWLAAAGVCSRREAERLIEEGLVAVNGQVLDSAA-FKVTGNEKITVEGKRVG---- 88 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R+ ++KP+G + T +DPEGRPTVF+ LPK + R + +GRLD+NT GLLL T D Sbjct: 89 GPDKTRLWRFHKPKGLVTTNSDPEGRPTVFEHLPK-KLPRVMTIGRLDLNTEGLLLLTND 147 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTI--KFSGGEGI 180 GELA L P+ ++R Y R FG++ A+L L GV E +++I +G Sbjct: 148 GELARTLELPTTGLKRCYRARAFGKITQAELDKLQEGVLFEG--VVYRSIIATLDKTKGD 205 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 N W ++TLTEG+ RE RR E+VG+ V+RLIRV YG L Sbjct: 206 NNWIDMTLTEGKKREARRALESVGLIVNRLIRVSYGPFEL 245 >UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9GX03_SORC5 Length = 399 Score = 150 bits (379), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 100/252 (39%), Positives = 143/252 (56%), Gaps = 17/252 (6%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGH-LIS 58 M E+LQK++ARAG SRR E +I AGRV V+G++ +LG + + +I +DG L+S Sbjct: 1 MEERLQKIIARAGVASRRASEELILAGRVRVNGRVVTELGLKADRQKD-RIEVDGKRLVS 59 Query: 59 VRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 + +A +KP + T DPEGRPTV D + + GAR VGRLD T G+LL Sbjct: 60 ------EAPVYVALHKPRNVVSTLRDPEGRPTVADHV-RGTGARLYPVGRLDFATSGILL 112 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG---PAAFKTIKFS 175 T DG+ AN L+HP V + Y ++V G + D L G++LEDG PA + ++ Sbjct: 113 MTNDGDFANALLHPRGGVPKTYVLKVQGVMSDDDLTPWREGIRLEDGVTLPAEARLLRH- 171 Query: 176 GGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLA 235 EG W VTL EGRN+++RR+ EA G V RL R + + +GL G W L + Sbjct: 172 --EGDKTWLEVTLREGRNQQIRRMGEATGWPVMRLARTTFAGV-SSEGLRPGEWRALTVD 228 Query: 236 QTNYLRELVELP 247 + ++RE +P Sbjct: 229 ELLHIREAFGVP 240 >UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B1M661_METRJ Length = 601 Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 97/221 (43%), Positives = 130/221 (58%), Gaps = 12/221 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ K +ARAG SRR+ E++I AGRVSV+G+ R VT +I IDG + RE Sbjct: 86 ERIAKAMARAGIASRRDAETMIVAGRVSVNGETLTSPAR-NVTENDRILIDGEPMPSRER 144 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R+ ++KP G + T DPEGR TVFD LP+ R +AVGRLD+NT GLLL T D Sbjct: 145 ----SRLWIFHKPRGVVTTARDPEGRQTVFDVLPEDL-PRVVAVGRLDINTEGLLLLTND 199 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQ---LEDGPAAFKTIKFSGGEG 179 G LA + HP R Y VR G D A+L L++GV +E GP + +G Sbjct: 200 GGLAKVIAHPDTGWLRRYRVRAHGDTDQAQLDRLAKGVTIDGMEYGPVEATLDRV---QG 256 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 N W + L EG+NREV+R+ E +G+ V+RLIR+ +G L Sbjct: 257 DNVWLTLGLREGKNREVKRILEHLGLSVNRLIRLSFGPFQL 297 >UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine synthase B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3D27 Length = 271 Score = 150 bits (378), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 104/246 (42%), Positives = 131/246 (53%), Gaps = 15/246 (6%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTP-GLKIRIDGHLISVRE 61 E+L K LA AG GSRR + +I AGRV V+G V+VT GLKI H I+V + Sbjct: 2 ERLNKYLAHAGVGSRRHCDKLISAGRVKVNG--------VKVTELGLKIDPSAHQIAVDD 53 Query: 62 S---AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 AE++ A KP G LCT +DP GRP D LP + R VGRLD + GLLL Sbjct: 54 QPVRAEKLV-YWAVNKPVGHLCTNHDPAGRPRAVDLLPHVE-QRVYTVGRLDEGSDGLLL 111 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG+LA L HP V + Y V V G+ D L+ L GV L DG K+ K + Sbjct: 112 MTNDGDLAQGLTHPRYGVPKMYFVLVAGRPTDDDLQKLMDGVWLSDGKVRAKSAKRIKAQ 171 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 G W V LTEG+NRE+RR+ G +V RL RV G + L K LP+G + + Sbjct: 172 GNGTWVRVVLTEGKNREIRRMLAKFGHKVMRLKRVAIGPVKLDK-LPKGKARRISDEELK 230 Query: 239 YLRELV 244 L+ V Sbjct: 231 ALKAFV 236 >UniRef50_B7L142 Pseudouridine synthase n=9 Tax=Alphaproteobacteria RepID=B7L142_METC4 Length = 674 Score = 150 bits (378), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 90/218 (41%), Positives = 126/218 (57%), Gaps = 6/218 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ K +ARAG SRR+ E++IEAGRV+++GK+ + VT +I +D + RE Sbjct: 22 ERIAKAIARAGIASRRDAEALIEAGRVTLNGKVL-TSPAINVTDSDRITVDDEPLPARER 80 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R+ +KP G + T DPEGRPTVFD LP+ R +A+GRLD+NT GLLL T D Sbjct: 81 ----TRLWLLHKPRGVVTTARDPEGRPTVFDGLPEEL-PRVVAIGRLDINTEGLLLLTND 135 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA + HP R Y VR FG V L L +G+ ++ +G N Sbjct: 136 GGLAKVIAHPDTGWLRRYRVRAFGDVTQPDLDKLKKGLTVDGMEYGPIEATLDRAQGDNV 195 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 W + L EG+NREV+R+ E +G+ V+RLIR+ +G L Sbjct: 196 WLTLGLREGKNREVKRILEHLGLSVNRLIRLSFGPFQL 233 >UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSY4_SYNAS Length = 251 Score = 149 bits (377), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 87/221 (39%), Positives = 130/221 (58%), Gaps = 7/221 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISV 59 M E+LQK+LAR+G SRR+ E +I GRVSV+ +I + LG + ++ +IR+DG LI Sbjct: 1 MEERLQKILARSGVASRRKAEEMIREGRVSVNSEIVRELGSKADIERD-EIRVDGKLIC- 58 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 AE+ + KP G + +DP+ RP V LP+L G R VGRLD ++ GLLL Sbjct: 59 ---AEETKVYVMLNKPRGYVTALSDPQKRPLVIHLLPEL-GVRLFPVGRLDYDSEGLLLL 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG A R+ HP + + Y V++ G+++ A+ L +G++LEDG A + Sbjct: 115 TNDGGFAQRVQHPRYRISKTYRVKISGRLNAAEFNRLQKGLELEDGKFAPDEVALEEINP 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 + W + ++EGRNR +RR +E +G +V RLIR D+ L Sbjct: 175 KSSWLTMKISEGRNRVIRRAFEQLGHEVLRLIRTAVADLHL 215 >UniRef50_C8WBY9 Pseudouridine synthase n=3 Tax=Zymomonas mobilis RepID=C8WBY9_ZYMMN Length = 509 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 102/250 (40%), Positives = 135/250 (54%), Gaps = 12/250 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE- 61 +++ K+L+RAG SRR IE++IE GR+++DG VE L +DG + + Sbjct: 271 QRIAKLLSRAGIASRRMIEAMIEEGRIAIDGVT------VEKPATLLTSLDGVTVDGKPV 324 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 +A R+ Y+K G L T DPEGR T++DRLP R + VGRLD+NT GLLL TT Sbjct: 325 NAPTETRLFLYHKATGLLTTERDPEGRKTIYDRLP-ADLPRVMPVGRLDMNTEGLLLLTT 383 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG L P+ +ER Y RVFG V +L +L GV ++ G N Sbjct: 384 DGGFKRMLELPATHIERCYRARVFGDVSQDQLEELIEGVTIDGIHYGSIDANLERRTGRN 443 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W + L EGRNREVRR+ +G+QVSRLIR+ YG L LP G E+D A L+ Sbjct: 444 GWVEMKLHEGRNREVRRVLGYLGLQVSRLIRISYGPF-LLGDLPVGAVEEVDPAT---LK 499 Query: 242 ELVELPPETS 251 PE S Sbjct: 500 AFKNTLPEMS 509 >UniRef50_B9JSE7 Ribosomal large subunit pseudouridine synthase B n=4 Tax=Alphaproteobacteria RepID=B9JSE7_AGRVS Length = 704 Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 97/227 (42%), Positives = 134/227 (59%), Gaps = 24/227 (10%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-------AKLGDRVEVTPGLKIRIDGH 55 E++ K+LARAG SRR++E +I GRV+V+GK+ A L DR+EV DG Sbjct: 83 ERISKLLARAGIASRRDVERMIMEGRVAVNGKVLDSPVLNATLADRIEV--------DGE 134 Query: 56 LISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCG 115 I E R+ Y+KP G + T +DPEGRPTVFD LP+ R +++GRLD+NT G Sbjct: 135 PIRGIER----TRLWLYHKPSGLVTTNSDPEGRPTVFDNLPEEL-PRVMSIGRLDINTEG 189 Query: 116 LLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIK-- 173 LLL T DG LA L P+ R Y VR +G++D AKL L G+ + DG + I Sbjct: 190 LLLLTNDGGLARVLELPTTGWLRRYRVRAYGEIDQAKLDTLKDGIAV-DG-VLYGAIDAV 247 Query: 174 FSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 +G N W + L EG+NRE++ + A+G++V+RLIR+ YG L Sbjct: 248 LDRSQGHNVWITMGLREGKNREIKNVLGALGLEVNRLIRISYGPFQL 294 >UniRef50_A8I6C3 Pseudouridine synthase n=6 Tax=Alphaproteobacteria RepID=A8I6C3_AZOC5 Length = 717 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 101/224 (45%), Positives = 132/224 (58%), Gaps = 16/224 (7%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +E++ KV+ARAG GSRREIE I AGRVSV+G++ VT +IR+DG + RE Sbjct: 29 AERIAKVIARAGLGSRREIEEWITAGRVSVNGEVL-ASPAFTVTAEDEIRVDGEPLPERE 87 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 R+ Y+KP G + T DPEGR T+F+ LP R ++VGRLD+N+ GLLL T Sbjct: 88 R----TRLFLYHKPIGVVTTNRDPEGRTTLFELLPGHL-PRLVSVGRLDINSEGLLLLTN 142 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED---GP--AAFKTIKFSG 176 DG LA L P R Y VR G VD A+L L +G+ +E GP A + Sbjct: 143 DGGLARVLELPETGWLRRYRVRAKGTVDQAQLDALIKGIVVEGVEYGPIEAVLDRV---- 198 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 +G N W V L EG+NREVR + A+G+QV+RLIR+ YG L Sbjct: 199 -QGANVWITVALREGKNREVRNVLGALGLQVNRLIRISYGPFQL 241 >UniRef50_C6XHY6 Pseudouridine synthase n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XHY6_LIBAP Length = 354 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 90/218 (41%), Positives = 129/218 (59%), Gaps = 6/218 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +++ KV+ARAG SRRE+E +I RV V+G + + V V I +DG + +R++ Sbjct: 14 QRVSKVIARAGIASRREVERMIAQQRVKVNGILLERAA-VNVMSTDHIEVDG--VPLRKA 70 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R+ Y+KP G + T +DP+GR TVFD LP + +R I+VGRLD+NT GLLL T D Sbjct: 71 ER--TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSI-FSRVISVGRLDINTEGLLLLTND 127 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA L PS + R Y VR GQVD KL L +G+ ++ + +G N Sbjct: 128 GGLARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNA 187 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 W V L EG+NRE+++++E +V+RLIR+ YG L Sbjct: 188 WVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQL 225 >UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IHU4_BEII9 Length = 528 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 100/259 (38%), Positives = 148/259 (57%), Gaps = 17/259 (6%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +++ KV+ARAG SRR+ E+ I GRVSV+G + V V+ I +DG ++ R Sbjct: 90 QRIAKVMARAGLCSRRDAEAWIAEGRVSVNGTVLTQPG-VSVSDEDVILVDGEKLAARGH 148 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFD----RLPKLRGARWIAVGRLDVNTCGLLL 118 R+ ++KP G + T +DPEGRPTVFD R P + R +++GRLD+NT GLLL Sbjct: 149 ----TRLFLFHKPRGLVTTNHDPEGRPTVFDYLHERHPDM--PRVLSIGRLDINTEGLLL 202 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG L+ L P+ R Y VR G D A L L +G+ ++ A + F + Sbjct: 203 LTNDGGLSRLLELPTTGWVRRYRVRAKGTTDQAVLDQLRQGITIDGIHYAGMEVTFDREQ 262 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 G N W ++L EG+NREV+R+ E +G++V+RLIR+ +G L LP G TE+ +T Sbjct: 263 GANSWLTLSLREGKNREVKRVLEQIGLEVNRLIRLSFGPFQL-GDLPEGDVTEV---RTR 318 Query: 239 YLRELVELPPETSSKVAVE 257 LR+ +L P ++ V+ Sbjct: 319 VLRD--QLGPSLAAAAGVD 335 >UniRef50_B4W9R3 Pseudouridine synthase n=2 Tax=Brevundimonas RepID=B4W9R3_9CAUL Length = 519 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/230 (42%), Positives = 135/230 (58%), Gaps = 23/230 (10%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKI----AKLGDRVEVTPGLKIRIDGHLI 57 +E++ K +ARAG SRRE+E +I G+V+V+G+I A L R +V I +DG I Sbjct: 85 AERIAKTMARAGIASRREVERLIGLGKVAVNGRILDTPATLVTRDDV-----ITVDGKPI 139 Query: 58 SVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLL 117 + Q RV Y+KP G L + +DP GRPTVFD LP R I+VGRLD+ T GLL Sbjct: 140 G----STQATRVWRYHKPAGLLTSHSDPTGRPTVFDALPAGL-PRVISVGRLDLATEGLL 194 Query: 118 LFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED---GP--AAFKTI 172 L T DGEL+ L P+ + R+Y R G++ +L L GV ++ GP A Sbjct: 195 LLTNDGELSRALELPATSLVRQYRARARGKITQEQLDKLKDGVVVDGVSYGPIEATLDKA 254 Query: 173 KFSGGEG----INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI 218 K S E N W +V++TEG+NREVR++ E+VG+ V+RLIR+ YG Sbjct: 255 KESKSEDGRAPANLWISVSITEGKNREVRKVLESVGLTVNRLIRLAYGPF 304 >UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=Q1J0B9_DEIGD Length = 253 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/216 (44%), Positives = 125/216 (57%), Gaps = 12/216 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQK LARAG SRR E +I AGRV+V+G+IA LG V P ++R+DG LI E+ Sbjct: 6 ERLQKRLARAGVASRRAAEDLITAGRVTVNGQIATLGR--TVMPDDEVRVDGRLI---EA 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 Q YKP G + T D GR V +P + G VGRLD ++ GLLL TTD Sbjct: 61 PAQESVTFLLYKPAGYVTTARDEYGRRNVLSAMPPIPGLH--PVGRLDKDSEGLLLLTTD 118 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+L L HP E+ Y GQ A+LR L G++L DGPA + + + G + Sbjct: 119 GQLTLTLTHPRYGHEKAYRAWTAGQPVAAELRVLETGIELADGPARALSARPARGGAL-- 176 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI 218 VTLTEGRNR+VRR+ +A+G V RL+R R G + Sbjct: 177 ---VTLTEGRNRQVRRMLDAIGYPVHRLLRYRVGGL 209 >UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZE67_PLALI Length = 554 Score = 147 bits (372), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 96/243 (39%), Positives = 133/243 (54%), Gaps = 9/243 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRE 61 E+LQKVLA AG+GSRR E IE GRV++DG +AK LG RV+++ K+ +DG + V E Sbjct: 37 ERLQKVLASAGYGSRRACEEYIEMGRVTIDGVVAKELGVRVDLS-RQKVAVDGEKLRVEE 95 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 R ++KP G LCT +DP GR V D P G R VGRLD T GLL+ T Sbjct: 96 K-----RYFLFHKPAGVLCTNSDPAGRTRVIDCFPPNVG-RLFTVGRLDDGTEGLLIVTN 149 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+LA RL HP + R Y V G + L G+ +G ++ +G Sbjct: 150 DGDLAERLTHPKFGIPRIYRAVVAGNPSTEAINQLLEGLYFAEGRFRMSSVNRVKSQGSA 209 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +T+ EG+NRE+RRL VG +V +L R +G I L L RG +L + + L+ Sbjct: 210 TVLEITMREGQNREIRRLLARVGHKVMKLKRTHFGPIKL-GDLERGAHRKLSEEELSKLQ 268 Query: 242 ELV 244 +++ Sbjct: 269 DVI 271 >UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HC79_ANADF Length = 354 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 104/245 (42%), Positives = 138/245 (56%), Gaps = 10/245 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK LA AG SRR+ E +I AGRV V+ + + LG +V+ L + +DG L+S E+ Sbjct: 13 RLQKYLAEAGVASRRKAEELILAGRVKVNARAVTVLGSKVDPARDL-VTVDGRLVSRSET 71 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 YKP G + T +DPEGRPT + L ++ R +VGRLD + G +LFT D Sbjct: 72 RSYYL----LYKPPGCVTTASDPEGRPTALEYLRGVK-ERVFSVGRLDFDAEGAVLFTDD 126 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPA-AFKTIKFSGGEGIN 181 GELANRL HP R Y V+V G+ A L L GV+LEDGPA A + + E N Sbjct: 127 GELANRLAHPRYGHRRTYLVKVRGEPPPAALERLVAGVRLEDGPARALEAVPHERAE-RN 185 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W V + EGR V+RL EAVG+QV RL R +G I + +GL G + L + L+ Sbjct: 186 VWIRVVVGEGRFHLVKRLCEAVGLQVQRLYRPEFGGITV-EGLRPGQFRPLAPVEVRALK 244 Query: 242 ELVEL 246 V L Sbjct: 245 TAVGL 249 >UniRef50_B8ETE9 Pseudouridine synthase n=1 Tax=Methylocella silvestris BL2 RepID=B8ETE9_METSB Length = 676 Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 128/220 (58%), Gaps = 7/220 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ KV+ARAG SRR+ E++I GRV+++G I + + V P I IDG ++ R Sbjct: 25 ERIAKVIARAGACSRRDAETLISEGRVALNGAIL-ISPAINVGPDDVILIDGAPLAERAR 83 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFD--RLPKLRGARWIAVGRLDVNTCGLLLFT 120 R+ ++KP G + T +DPEGRPTVFD R R +++GRLD+NT GLLL T Sbjct: 84 ----TRLFLFHKPRGLVTTEHDPEGRPTVFDYVREHSPEAPRLVSIGRLDINTEGLLLLT 139 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG LA L P+ R Y VR G +D L L +GV +E A +G Sbjct: 140 NDGGLARVLELPATGWARRYRVRAKGSIDQPTLDRLRQGVTVEGVDYAQIEATLDRIQGA 199 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 N W ++L EG+NRE++R+ E +G++V+RLIR+ YG L Sbjct: 200 NCWLTMSLREGKNREIKRVLEHLGLEVNRLIRLSYGPFQL 239 >UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B6IXC3_RHOCS Length = 551 Score = 146 bits (369), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 100/223 (44%), Positives = 131/223 (58%), Gaps = 12/223 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ K L+RAG SRR+ E I GRVSV+G++ V V PG +I +DG + E Sbjct: 31 ERISKRLSRAGLCSRRDAERWIAEGRVSVNGRVLDT-PAVTVRPGDRIVVDGQPVPEPEP 89 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 RV Y+KP+G + T D +GRPTVFD LP R ++VGRLD+ + GLLL T D Sbjct: 90 ----TRVWRYHKPDGLVTTARDEKGRPTVFDNLPPEL-PRVVSVGRLDLTSEGLLLLTND 144 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED---GPAAFKTIKFSGGEG 179 G LA L P R Y VRV G D+A++ L++G+ +E GP +T+ G Sbjct: 145 GALARHLELPVTGWLRRYRVRVHGAPDEAQIAKLAQGIIIEGIEYGP--IETV-VDRSVG 201 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPK 222 N W V+L EGRNREVRR+ E +G+ VSRLIRV YG L K Sbjct: 202 ANTWLTVSLREGRNREVRRVMEHLGLPVSRLIRVAYGPFQLGK 244 >UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJH7_THEYD Length = 237 Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/213 (38%), Positives = 126/213 (59%), Gaps = 6/213 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M E+LQK+L+ G SRR E +I+ GRV+V+G+IA +G + + I++DG L+ Sbjct: 1 MLERLQKILSDYGIASRRHAEELIKEGRVTVNGQIAVIGQKADPEKDY-IKVDGKLLIKP 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E A+YKP + DP+GRPT+ D + ++ R VGRLD ++ GLLL T Sbjct: 60 EPKVY----YAFYKPRKVITALLDPQGRPTIRDFIKGIK-FRIYPVGRLDFDSEGLLLLT 114 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELA ++MHPS ++E+ Y V+V G V+ + L +G+++E A ++ Sbjct: 115 NDGELAYKVMHPSSQIEKTYMVKVDGIVEPETIEKLRKGIKIEGKLAVPVSVHLVKKLKA 174 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRV 213 N W +TL EGR R++R++ E VG V RLIR+ Sbjct: 175 NSWIKITLHEGRKRQIRKMLERVGHPVIRLIRI 207 >UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=Q65HX7_BACLD Length = 244 Score = 145 bits (367), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 98/246 (39%), Positives = 141/246 (57%), Gaps = 12/246 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQKV+A AG SRR+ E +I+ GRV+V+GK + +LG V+V+ +I ++G + E Sbjct: 2 ERLQKVIAHAGIASRRKAEELIKEGRVTVNGKTVRELG--VKVSSSDRIEVNGVQL---E 56 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 S E + +L YKP G + D +GR V D ++ R +GRLD +T GLLL T Sbjct: 57 SEEPVYFLL--YKPRGVISAVKDDKGRKVVTDFFTEVE-ERIYPIGRLDYDTSGLLLLTN 113 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+ AN+LMHP E+ + Y ++ G L+ L RGV+LEDG A +K + Sbjct: 114 DGDFANKLMHPKYEINKTYVAKLKGIPLKENLKKLERGVRLEDGKTAPAKVKLLSLDKKK 173 Query: 182 Q--WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 Q +T+ EGRNR+VRR++EA+G +V +L R Y + L GL G EL + Sbjct: 174 QTSIVQITIHEGRNRQVRRMFEAIGHEVLKLKREEYAFLNLA-GLKTGEKRELTPHEVKR 232 Query: 240 LRELVE 245 LR L E Sbjct: 233 LRALAE 238 >UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT7_ACIBL Length = 680 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 102/268 (38%), Positives = 148/268 (55%), Gaps = 33/268 (12%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVR 60 SE+LQK++A AG SRR+ E ++ AGRV+V+G++ +LG + + IR+DG + Sbjct: 3 SERLQKIIAAAGMASRRKAEELVTAGRVTVNGEVKNELGSKADPE-TDDIRVDGKPLK-- 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 AEQ+ VL +KP+G + T +DPEGR TV D L K AR VGRLD + GLLL T Sbjct: 60 --AEQLVYVL-LHKPKGYVTTVSDPEGRETVMD-LVKGIPARLYPVGRLDYLSEGLLLLT 115 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGG--- 177 DGE+A +L H S V ++Y V+V G+ + ++++L GVQL GG Sbjct: 116 NDGEMAAKLTHASTHVPKKYLVKVSGEPTEEQIQELRNGVQLPPEQGHIHADPREGGRFG 175 Query: 178 --------------------EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGD 217 EG N WY VTL EGRNR++RR+++ +G V ++ RV YG Sbjct: 176 GEKRRSTAVKTAPCKIELTREGDNPWYEVTLNEGRNRQIRRMFDFIGHHVEKIKRVEYG- 234 Query: 218 IPLPKGLPRGGWTELDLAQTNYLRELVE 245 PL + G + L+ A+ L++ E Sbjct: 235 -PLKLDVENGEFRLLNPAEVARLKKAAE 261 >UniRef50_C5SKU3 Pseudouridine synthase n=2 Tax=Asticcacaulis excentricus CB 48 RepID=C5SKU3_9CAUL Length = 489 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/223 (42%), Positives = 131/223 (58%), Gaps = 11/223 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ KVLARAG SRRE+E +I G+++V+G++ V+P I ++G I E Sbjct: 46 ERIAKVLARAGLASRREVERLIGLGKIAVNGRLLDT-PATTVSPDDLITVEGKPIRKAEP 104 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 RV Y+KP G + T DP+GRPTVF+ LP+ R I+VGRLD+N+ GLLL T D Sbjct: 105 ----TRVWRYHKPVGLMTTHQDPQGRPTVFNSLPQ-ELPRVISVGRLDINSEGLLLLTND 159 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED---GPAAFKTIKFS-GGE 178 GELA L P+ R Y VR G+ L L GV +E GP K K + Sbjct: 160 GELARALELPTTGWTRVYRVRALGRTTQEALDTLKTGVTVEGVQYGPIEAKLDKAQEKAD 219 Query: 179 G-INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 G N W V+L EG+NREVR++ +++G++V+RLIR+ YG L Sbjct: 220 GRANLWITVSLNEGKNREVRKVLDSLGLKVNRLIRLAYGPFQL 262 >UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=A1UU09_BARBK Length = 499 Score = 144 bits (363), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 92/222 (41%), Positives = 125/222 (56%), Gaps = 12/222 (5%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 SE++ K LARAG SRR+ E +I AGR++V+G + TP L + H I+V E Sbjct: 44 SERIAKRLARAGIASRRDAEMMIIAGRIAVNGTVV-------TTPVLNVIPSDH-ITVDE 95 Query: 62 ---SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 + R+ Y+KP G + T DPEGRPTVFD LPK R ++VGRLD+NT GLLL Sbjct: 96 IPIPPIERTRLWLYHKPSGLVTTNRDPEGRPTVFDNLPK-EMPRVVSVGRLDINTEGLLL 154 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG LA L P R+Y VR G++ ++L L G+ ++ + Sbjct: 155 LTNDGGLARVLELPLTGWVRKYRVRAHGKIKQSELDKLKNGIAIDGIFYGSIDASIDREQ 214 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 G N W +V L EG+NRE++ A+G+ V+RLIRV YG L Sbjct: 215 GSNVWLSVALREGKNREIKNFLGALGLSVNRLIRVSYGPFQL 256 >UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1D5Q2_MYXXD Length = 745 Score = 143 bits (360), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 125/220 (56%), Gaps = 9/220 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLK-IRIDGHLIS 58 +E+LQK LARAG SRR E +I AGRV+V+ K + +LG RVE PG + +DG L++ Sbjct: 2 AAERLQKYLARAGVASRRHAEELITAGRVAVNNKTVTELGSRVE--PGTDLVTVDGTLVT 59 Query: 59 VRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 + + YKP G + T +DP+GRPTV + + + G R VGRLD + G LL Sbjct: 60 PPDESSYFL----LYKPVGVVTTLSDPQGRPTVANYVEET-GKRLFPVGRLDYDAEGALL 114 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 FT DG LA++L HPS +V R Y +V G D A L L GV+LEDG A ++ Sbjct: 115 FTDDGALAHKLTHPSFQVPRTYLAKVKGAPDTATLDKLRGGVRLEDGMATPVSVSVFEAA 174 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI 218 N W + + EGR ++RL AVG V RL R Y + Sbjct: 175 ERNTWLKIVVAEGRPHLIKRLCAAVGHPVVRLFRPSYAGV 214 >UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK28_FIBSS Length = 243 Score = 143 bits (360), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 93/247 (37%), Positives = 143/247 (57%), Gaps = 9/247 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K ++ +G SRR + ++ GRV V+G+ I+ LG +V+ T ++ +DG L+ + Sbjct: 2 RINKYISLSGFASRRAADELVADGRVQVNGETISDLGHQVDETKD-QVTVDGKLLKL--P 58 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + +V+ ++KP G +CT++DP+GR TV+D LP + VGRLD+ + GLLLFT D Sbjct: 59 TNKKTKVIMFHKPAGCVCTKDDPQGRRTVYDYLPP-GYHNFKYVGRLDLQSRGLLLFTDD 117 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED--GPAAFKTIKFSGGEGI 180 GEL RL HPS EV R Y V + ++ + L GV + D P A + I F+ + Sbjct: 118 GELLYRLTHPSFEVPRSYYVWTTRPLSESAAQRLVDGVDIRDPEDPDAQEEIAFATDVYL 177 Query: 181 -NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 N + + L EG+NRE+RR+ A+G ++ L RV Y I L LP G + EL + N Sbjct: 178 ENGFAELVLIEGKNREIRRMMRAIGYEIRDLKRVSYCQIQL-GDLPAGEFRELTPNELNK 236 Query: 240 LRELVEL 246 LR+ V L Sbjct: 237 LRQAVHL 243 >UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3E8_9ACTO Length = 325 Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 96/226 (42%), Positives = 126/226 (55%), Gaps = 17/226 (7%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQKVLA AG SRR E II AGRVSVDG + + G RV+ + +IR+DG + Sbjct: 76 ERLQKVLAHAGVASRRACEEIIAAGRVSVDGVVVTEPGVRVDPSRQ-EIRVDGSRVL--- 131 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFD-----------RLPKLRGARWIAVGRLD 110 + + VL +KP G + T DP+GRPTV D L R + VGRLD Sbjct: 132 TDPDVITVL-LHKPAGVVTTMEDPQGRPTVADLAEQFISEHRTELEHPESVRLVHVGRLD 190 Query: 111 VNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFK 170 T GLLL + DG+LA+RLMHPS E+ + Y V GQV+ R L RG++L+DG A Sbjct: 191 TETEGLLLLSNDGDLAHRLMHPSFEISKTYVAIVEGQVEGWVPRKLRRGIELDDGLAQAD 250 Query: 171 TIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYG 216 + +TL G+NR VRR+ +AVG V+RL R + G Sbjct: 251 RVVVKDAGPSGSIVEITLHSGKNRIVRRMLDAVGHPVTRLARTKLG 296 >UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B n=200 Tax=Bacteria RepID=RLUB_BACSU Length = 244 Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/246 (39%), Positives = 139/246 (56%), Gaps = 12/246 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQKV+A AG SRR+ E +I+ G+V V+GK+ +LG V+VT +I ++G + E Sbjct: 2 ERLQKVIAHAGVASRRKAEELIKEGKVKVNGKVVTELG--VKVTGSDQIEVNGLKV---E 56 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 E + +L YKP G + D +GR V D + R +GRLD +T GLLL T Sbjct: 57 REEPVYFLL--YKPRGVISAAQDDKGRKVVTDFFKNI-PQRIYPIGRLDYDTSGLLLLTN 113 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGE AN+LMHP E+++ Y +V G LR L RG++LE+G A K + Sbjct: 114 DGEFANKLMHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGKTAPAKAKLLSLDKKK 173 Query: 182 QWYNVTLT--EGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 Q + LT EGRNR+VRR++EA+G +V +L R Y + L +GL G EL + Sbjct: 174 QTSIIQLTIHEGRNRQVRRMFEAIGHEVIKLKREEYAFLNL-RGLHTGDARELTPHEVKR 232 Query: 240 LRELVE 245 LR L + Sbjct: 233 LRALAD 238 >UniRef50_C1A8K5 Pseudouridine synthase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8K5_GEMAT Length = 237 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/243 (40%), Positives = 138/243 (56%), Gaps = 14/243 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGL-KIRIDGHLISVRES 62 ++Q+ LAR G SRRE + + GRV V+G A +G V+ P +I +DG ++ + + Sbjct: 2 RVQRALARVGAVSRREADKAVAEGRVQVNGTTAIVGQLVD--PARDRITLDGTPVATQVT 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 A R + +KP + TR DPEGR TVFD + G + VGRLD T G+LL TTD Sbjct: 60 AH---RWIVLHKPAAVMTTRKDPEGRATVFDLVDDAPG--LVYVGRLDFMTEGVLLLTTD 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIK-FSGGEGIN 181 G A+ L HPS EVER Y V G A R+ RGV+L+DG + + GE Sbjct: 115 GTAAHVLTHPSHEVERTYVATVRGDAVTAA-REARRGVKLDDGLVVPSEVTAYPLGE--R 171 Query: 182 QW-YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +W + +T+TEGR EVRR+ +A+G++V RL+R R+G + L + LP G L A+ L Sbjct: 172 RWAFELTITEGRTHEVRRICDALGLEVERLVRTRFGPVRLGE-LPSGAARALTSAERTVL 230 Query: 241 REL 243 L Sbjct: 231 DAL 233 >UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B0TFD8_HELMI Length = 333 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 105/270 (38%), Positives = 143/270 (52%), Gaps = 12/270 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRES 62 +LQK+LA G SRRE E++I AGRV ++G + + G RV+ + I +DG ++ RE+ Sbjct: 7 RLQKLLAAHGVASRREAEAMIRAGRVRINGTVVREQGVRVDGARDV-IEVDGRILKRREA 65 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 A YKP G + T DP+GR TV L + R VGRLD +T GLLL T D Sbjct: 66 PL----YYALYKPRGVVTTCKDPQGRQTVIGLLSGVN-ERVYPVGRLDRDTEGLLLLTND 120 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA RL HP VE+ Y R+ G V L+ L+ GVQLEDG A ++ EG Sbjct: 121 GQLAFRLTHPRFGVEKTYRARLRGDVSAGALKALAEGVQLEDGVTAPAQVRLLRREGDAT 180 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W + + EGR R++RR+ +A+G V L R+ +G I L K P G L A+ L+ Sbjct: 181 WIEIKIHEGRKRQIRRMGDAIGHPVIDLERIAFGPITLGKLKP-GEVRPLTSAELRALKS 239 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAV 272 + T A +D RR A R A Sbjct: 240 AAGMKEAT----AHGRDERRQTARPSRTAA 265 >UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KIR7_9FIRM Length = 250 Score = 142 bits (357), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 99/232 (42%), Positives = 133/232 (57%), Gaps = 14/232 (6%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRE 61 E+LQK++++AG SRR E +I GRV VDG++ + LG +V+ I +DG I+ Sbjct: 5 ERLQKIISQAGIASRRAAEKMILEGRVRVDGQVVRELGTKVD-PAAHTILVDGKKIA--- 60 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 E+ L KP+G L T D GR TV D LP++R R VGRLD NT GLLL T Sbjct: 61 -GEEQHVYLLLNKPKGYLSTAKDDRGRRTVLDLLPEVR-ERVYPVGRLDNNTEGLLLITN 118 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF----SGG 177 DG L N L+HP EVE+ Y V G++ + KL+ L G+ LEDG A + G Sbjct: 119 DGALMNGLLHPRFEVEKTYHAGVTGKLTEEKLQMLRDGLLLEDGMTAPAKVSLLPEREPG 178 Query: 178 EGINQWYN--VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRG 227 E + +T+ EGRNR+VRR++ AVG V L RVR+ + L KG+ RG Sbjct: 179 ERVRGLTRAAITIHEGRNRQVRRMFAAVGCDVKSLKRVRFAGLTL-KGVARG 229 >UniRef50_B6R892 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R892_9RHOB Length = 681 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 96/226 (42%), Positives = 126/226 (55%), Gaps = 18/226 (7%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 E++ K +ARAG SRRE E+ IEAGRVSV+G + VT K+ +DG + R Sbjct: 35 TGERIAKAMARAGLCSRREAETWIEAGRVSVNGNVLDT-PAFTVTQKDKVYVDGKPLPTR 93 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E R+ ++KP G + T DPEGR TVFD LPK R + VGRLD+NT GLLL T Sbjct: 94 ER----TRLWLFHKPRGTVTTNKDPEGRKTVFDILPKDM-PRVVTVGRLDINTEGLLLLT 148 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG------PAAFKTIKF 174 DG L+ + P+ R Y VR FG+V +L L GV + DG A T K Sbjct: 149 NDGGLSRVIELPATGWLRRYRVRAFGKVTQEQLDALKDGVAI-DGVLYGAIEATLDTEK- 206 Query: 175 SGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 G N W + L EG+NREV+R+ E + + V+RLIR+ +G L Sbjct: 207 ----GDNVWLTIGLREGKNREVKRILEHLDLSVNRLIRISFGPFQL 248 >UniRef50_UPI00006CCA31 conserved hypothetical protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CCA31 Length = 484 Score = 140 bits (354), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 81/226 (35%), Positives = 125/226 (55%), Gaps = 5/226 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+L K L+R+G SRR+ E +I+ G + VDGK+A + VTP I I Sbjct: 176 ERLSKYLSRSGVCSRRQAEKMIKDGLIKVDGKVA--TSNLPVTPKNNIEIFTQRGEKFAP 233 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL---PKLRGARWIAVGRLDVNTCGLLLF 119 +Q ++ +YKP G +C+ +DP RP+VF+ + K++ IAVGRLD N+ GL+L Sbjct: 234 VKQNAKIWIFYKPRGMICSHDDPLKRPSVFNYIYNNTKIKEPHIIAVGRLDYNSEGLILL 293 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG++A L P + R+Y VRV G++D+ KL L +G + ++ + Sbjct: 294 TNDGDIAQCLEQPESNIYRQYRVRVQGELDERKLLKLRQGTVINGVQYGPFNVEIDKRQS 353 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLP 225 N W V L G+NRE+R++ + ++VSRL R+ YG + LP Sbjct: 354 SNTWLTVGLYTGKNREIRKVMQKFDLRVSRLKRLSYGPYKIGSMLP 399 >UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrionales RepID=C4XSY8_DESMR Length = 322 Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 100/249 (40%), Positives = 141/249 (56%), Gaps = 13/249 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K LA AG SRR + +I AGRV+V+G + + G R++ + +DG +++ Sbjct: 10 RINKALASAGVCSRRHADDLIAAGRVTVNGAVVTEAGLRIDPARD-ALAVDGAPVNL--- 65 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKL-RGARWIAVGRLDVNTCGLLLFTT 121 A +I LA +K G + T +DPEGRPTVFD LP++ RG R VGRLD + GLLL TT Sbjct: 66 APEIPITLALHKKPGVVTTASDPEGRPTVFDGLPEVWRGKRLFPVGRLDFFSEGLLLLTT 125 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIKFSGG 177 DGELA RL HP V + Y V V GQV L ++RG++L +G P A + ++ G Sbjct: 126 DGELALRLTHPRWHVPKRYRVTVRGQVTPDMLGTMARGMRLAEGERLAPVAARVVE--GP 183 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 + L +G NR++RR+ +G+ V RL RV G + L LP G EL A+ Sbjct: 184 AQDRSILEMELHQGVNRQIRRMCRDLGLTVLRLARVSQGPVAL-GDLPLGACRELTPAEL 242 Query: 238 NYLRELVEL 246 LR+ V L Sbjct: 243 ATLRQSVGL 251 >UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFA0_THET1 Length = 253 Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 99/249 (39%), Positives = 134/249 (53%), Gaps = 8/249 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K+LA+ G SRR E +I GRVSV+G+I + +P +IR+DG L VR+ Sbjct: 6 RLHKLLAQMGVASRRAAERMIAEGRVSVNGRIVNTPGAM-ASPEDEIRVDGKL--VRQQP 62 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + R + KP G L T D GR TV D L + R VGRLD ++ GL+L T DG Sbjct: 63 K--MRYILLNKPAGVLSTAKDERGRKTVIDLLGQ--SNRVYPVGRLDKDSEGLMLLTNDG 118 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 ELA R+ HP V ++Y V V G D L+DL +GV+LEDG + K Sbjct: 119 ELAQRITHPRYGVHKQYMVEVEGYFSDRSLQDLLQGVELEDGFSKPLDAKIISRSRDKSK 178 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 +T+ EGR R+VRR A+G +V RL RV G + L P G + EL + +LR Sbjct: 179 LLITMGEGRKRQVRRTLAALGYKVKRLTRVALGPLSLGNLKP-GEYRELSDQEAKWLRSQ 237 Query: 244 VELPPETSS 252 + L PE S+ Sbjct: 238 LGLTPEISN 246 >UniRef50_Q13BM8 Pseudouridine synthase n=55 Tax=Alphaproteobacteria RepID=Q13BM8_RHOPS Length = 795 Score = 140 bits (353), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 126/218 (57%), Gaps = 6/218 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +++ KV+ARAG SRR+ E+ I GRV+V+G++ ++VT I +DG + RE Sbjct: 476 DRIAKVVARAGLCSRRDAEAWIVEGRVAVNGRVIDS-PALDVTYSDVITVDGKPLPERER 534 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R+ Y+KP G + T DPEGRPTVFD LP+ R I++GRLD NT GLLL T D Sbjct: 535 ----TRLFLYHKPRGLMTTHADPEGRPTVFDNLPEDL-PRLISIGRLDFNTEGLLLLTND 589 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA L P R Y VR G+V A+L L+ GV+++ K +G N Sbjct: 590 GGLARALELPETGWLRRYRVRAHGEVTQAQLDQLASGVEVDGVKYGPIEAKLERDQGANV 649 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 W + EG+NREVR + +G++V+RLIRV YG L Sbjct: 650 WLVFAIREGKNREVRNVLAHLGLEVNRLIRVSYGPFQL 687 >UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5V220_ROSS1 Length = 624 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 113/283 (39%), Positives = 151/283 (53%), Gaps = 21/283 (7%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKL-GDRVEVTPGLKIRIDGHLISVR 60 +E+LQKVLA AG SRR+ E I AGRV V+GK+ ++ G RV+ +I +DG I Sbjct: 3 AERLQKVLASAGIASRRDCEEYIAAGRVMVNGKVVRIPGTRVDPEHD-EILVDGRPIGKI 61 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + +KP G + T +DP+GRPTV D L L R VGRLD ++ GLLL T Sbjct: 62 HHRTYVM----LHKPAGVVSTTDDPQGRPTVID-LVNLE-QRLFPVGRLDYDSEGLLLLT 115 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGEL +L HPS +VE+EY V + A LR GV+L+ A ++ Sbjct: 116 DDGELTQKLTHPSYQVEKEYRVLLNEAPSPAALRAWRTGVELDGVKTAPAWVELIERTPD 175 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 W V L EGR R++R + +G +V RLIRVR G + L LP G W L + + L Sbjct: 176 GAWVRVILHEGRKRQIREVARVLGYEVRRLIRVREGPLTLGD-LPSGTWRFLTDEEVDML 234 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRR 283 RE E ++ VA +A Q RR + +QVSGGRR Sbjct: 235 REHA----ERNAAVA--------EAEQPRRREQGETQVSGGRR 265 >UniRef50_Q0C3M6 Pseudouridine synthase n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C3M6_HYPNA Length = 305 Score = 140 bits (352), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 102/221 (46%), Positives = 132/221 (59%), Gaps = 12/221 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKL-GDRVEVTPGLKIRIDGHLISVRE 61 E++ K LARAG SRRE+E +IEAG V+V+G+ KL +VT I++ +I Sbjct: 38 ERIAKYLARAGVASRREVERLIEAGEVTVNGQ--KLTSPAFKVTGREAIKVGRKVIQ--- 92 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 A R+ Y+KP G + T NDP GR T+FD LPK R + VGRLD+ T GLLL T Sbjct: 93 -APDASRLWRYHKPSGLITTTNDPAGRRTIFDELPKSL-PRTVTVGRLDLTTEGLLLLTN 150 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIK--FSGGEG 179 DGELA L P +ER Y VR G V K+ +L+ G+ +E ++ IK F G Sbjct: 151 DGELARFLELPKSALERTYRVRAKGTVTQLKIDELASGITVEG--VKYQPIKAVFDREMG 208 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 N W VTLTEG+NREVR+ E+VG+ V+RLIRV YG L Sbjct: 209 ANSWLTVTLTEGKNREVRKALESVGLTVNRLIRVSYGPFLL 249 >UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales RepID=Q47QM5_THEFY Length = 375 Score = 139 bits (351), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 122/220 (55%), Gaps = 8/220 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRES 62 +LQK LA+AG SRR E +I AGRVSVDG+I + G RV+ +IR+DG +R Sbjct: 136 RLQKALAQAGVASRRACEELIAAGRVSVDGQIVRRFGARVDPEKS-EIRVDG----MRVV 190 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRG--ARWIAVGRLDVNTCGLLLFT 120 Q R A KP G + T DPEGRPT+ D ++ R VGRLD +T GL+L T Sbjct: 191 TSQNLRYYALNKPRGVVSTMFDPEGRPTIGDYAAQIGPIEERLFHVGRLDTDTEGLILLT 250 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELANRL HP +V + Y +V G V +R + +GV+L+DG + + Sbjct: 251 NDGELANRLTHPRYKVTKTYLAKVPGPVPRDVIRQIRKGVELDDGFVKVDSFRVIDNIEP 310 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 + L EGR VRRL +AVG VS L R + G + L Sbjct: 311 KALVEIRLHEGRKHIVRRLMKAVGHPVSDLARTQIGPVGL 350 >UniRef50_Q1D9N8 Pseudouridine synthase n=4 Tax=Cystobacterineae RepID=Q1D9N8_MYXXD Length = 268 Score = 139 bits (351), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 87/230 (37%), Positives = 126/230 (54%), Gaps = 14/230 (6%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAE 64 L + LARAG ++E E I AGRVS++G++AK+ V PG +++DG ++S+ Sbjct: 26 LSRALARAGVFPQKEAEDAIRAGRVSINGRVAKMA-LTPVPPGATVKVDGLVVSLEAPP- 83 Query: 65 QICRVLAYYKPEGELCTRNDPEGRPTVFDRL-----PKLRGARWIAVGRLDVNTCGLLLF 119 RVLA++KP G L + TVF+ L P+L G W AVGRLDV++ GLLLF Sbjct: 84 --TRVLAFHKPAGLLSSTERQHRTGTVFEALLPQLPPELAGYTWHAVGRLDVDSTGLLLF 141 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T D +L P + + Y VF D ++ L RG+ L+DGPA + Sbjct: 142 TNDDKLVAHATSPDAHLPKRYVATVFSTASDERVEPLRRGMTLDDGPARPAKVNVRDEHT 201 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGW 229 + VTLTEGR+ +V+R+ AVG+ V L R G + L +G+P G + Sbjct: 202 V----EVTLTEGRHHQVKRMLGAVGLPVRALHREAVGSVDL-EGIPEGTF 246 >UniRef50_Q8T866 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q8T866_DICDI Length = 401 Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/234 (37%), Positives = 127/234 (54%), Gaps = 7/234 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +E++QK+LARAG SRR+ E +I GRV V+GKI K+ + + V P I +D I V + Sbjct: 137 TERIQKILARAGIASRRKAEELIIDGRVKVNGKIIKM-EEILVKPHDIITVDDKPIKVDK 195 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGA-RWIAVGRLDVNTCGLLLFT 120 ++ ++K L + DP+GR + + K+ G I+VGRLD T GL+LFT Sbjct: 196 P-----KIWMHFKNPQVLTSEYDPDGRDCLLPIIRKVIGIDHLISVGRLDYYTEGLILFT 250 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELA L P R Y VR+FG+ D L++G+ + + +++ Sbjct: 251 NDGELARYLTLPQNLFFRVYKVRIFGKFTDEMKFSLAKGMVINEVFYRPVSVQVESETDS 310 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDL 234 N W +TL EG+ RE+R L E V+V RLIRV YG LP L G E+ + Sbjct: 311 NTWLRITLQEGKKREIRTLLEYFNVKVLRLIRVAYGPYVLPNSLKHGETIEVPI 364 >UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actinobacterium RepID=D0U645_9ACTN Length = 237 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 95/245 (38%), Positives = 139/245 (56%), Gaps = 14/245 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGL-KIRIDGHLISVRE 61 +L K++A AG SRR + +IE GRV+V+G I + +G + + P + K+ +DG I+ Sbjct: 5 RLNKIIADAGITSRRGADELIEDGRVAVNGIIVREMGSKFD--PEMDKVMVDGETITRTL 62 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + LA +KP+G L T DPEGRP++ D LR R VGRLD ++ GL+L T Sbjct: 63 TKSY----LALHKPKGVLSTMFDPEGRPSL-DDFIDLRKERLFHVGRLDKDSEGLILLTN 117 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+L R HPS +E+ Y + G + + L +GV+LEDG T K + Sbjct: 118 DGDLTFRATHPSFGLEKTYIIEFDGILPTGVDKVLLKGVELEDGMGRVLTFK----QLSP 173 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +W V++ EGR +RRL EAVGV V RLIR ++G I L P G W +L+ + LR Sbjct: 174 KWIEVSIHEGRYHIIRRLMEAVGVNVLRLIRTKFGPISLGDT-PEGRWRDLNDGELMNLR 232 Query: 242 ELVEL 246 + ++L Sbjct: 233 KALDL 237 >UniRef50_A9MDW0 Pseudouridine synthase n=43 Tax=Rhizobiales RepID=A9MDW0_BRUC2 Length = 611 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/219 (41%), Positives = 125/219 (57%), Gaps = 6/219 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 SE++ K LARAG SRRE E++I GR++V+GK+ + V V I +DG + E Sbjct: 103 SERIAKRLARAGIASRREAETMIATGRIAVNGKVLE-SPAVNVKRTDIITVDGKPLRQTE 161 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 R+ Y+KP G + T DPEGRPTVF+ LP R ++VGRLD+NT GLLL T Sbjct: 162 R----TRLWLYHKPAGLVTTNRDPEGRPTVFEALPPEM-PRVLSVGRLDINTEGLLLLTN 216 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG L+ L PS R Y VR G+V +L +L G+ ++ + +G N Sbjct: 217 DGGLSRVLELPSTGWLRRYRVRAHGKVTQQQLDELKNGIAVDGVFYGSVEAELERVQGAN 276 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 W ++ L EG+NREV+ + A+G+ V RLIRV +G L Sbjct: 277 VWISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQL 315 >UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIA1_RHOM4 Length = 268 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/257 (38%), Positives = 138/257 (53%), Gaps = 13/257 (5%) Query: 4 KLQKVLARAG-HGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + LARAG SRR+ + +I +G+V V+G++A+LG RV P + ++G VR Sbjct: 11 RLNRYLARAGVCPSRRKADELIASGQVRVNGQVAQLGMRV--GPDDIVEVNG----VRVV 64 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFD--RLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + KP + T +D GR TV D LP + VGRLD NT G+LL T Sbjct: 65 PQTQALYILMNKPHDTITTCDDERGRRTVLDLINLPPEQKNGLFPVGRLDRNTTGVLLLT 124 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELANRLMHP VE+ Y R V + L RGVQLEDGPA + ++ + Sbjct: 125 NDGELANRLMHPRYRVEKIYVARTARPVKPEEAEQLRRGVQLEDGPA--RAVQVAVNPAD 182 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + EGRNR+VRR+ EA+G +V +L R Y + KG+ G W L A+ L Sbjct: 183 PHEIALMIYEGRNRQVRRMLEAIGHEVVQLKRTHYAGL-TTKGVRPGKWRRLTDAEVRRL 241 Query: 241 RELVEL-PPETSSKVAV 256 L L PP+T + + Sbjct: 242 YRLAGLKPPKTFKTMPI 258 >UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium RepID=C8NNL7_COREF Length = 329 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 95/246 (38%), Positives = 130/246 (52%), Gaps = 9/246 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKL-GDRVEVTPGLKIRIDGHLISVRES 62 +LQKVLA+AG SRR E +I+ GRV V+G+I G RV + IR+DG I++ E Sbjct: 90 RLQKVLAQAGVASRRHAEILIDNGRVEVNGRIVTTQGTRVNPNSDV-IRVDGVRININED 148 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLLFT 120 E KP G T +D GRP V D + + G R VGRLD +T GLLL T Sbjct: 149 LE----YFVLNKPRGMHSTMSDDLGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLT 204 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELANRLMHP EV + Y V G+ + L +G++LEDGPA ++ Sbjct: 205 NDGELANRLMHPKYEVRKTYLATVRGEAGPNLVTTLRKGIELEDGPAKADYVQIIDTFQG 264 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + EGR VRR+ + G V RL+R + + L + P G L+ ++ L Sbjct: 265 KSLIRLEIHEGRKHIVRRMLDEAGFPVERLVRTKLHTVQLGEQKP-GSLRALNASELASL 323 Query: 241 RELVEL 246 ++VEL Sbjct: 324 YKVVEL 329 >UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae RepID=Q1GFA6_SILST Length = 422 Score = 138 bits (348), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/218 (40%), Positives = 126/218 (57%), Gaps = 6/218 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +++ KVL+RAG SRRE E +I GRV+V+GK+ + VT +I +DG+ + E+ Sbjct: 62 DRIAKVLSRAGVASRREAERMIAEGRVAVNGKVID-SPALNVTNLDRIVVDGNPLPEAEA 120 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R+ YYKP G + T +D +GR T+FD LP+ R + VGRLD+N+ GLLL T D Sbjct: 121 P----RLWLYYKPNGLVTTTSDEKGRKTIFDALPEDL-PRVMTVGRLDLNSEGLLLLTND 175 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G + +L PS R Y VR+ G+ D + L +GV ++ TI +G N Sbjct: 176 GGVKRQLELPSTGWLRRYRVRINGRPQDHEFDVLRKGVVIDGERFQPMTISLDRQQGANA 235 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 W + L EG+NRE+RR E VG V+RL+R+ YG L Sbjct: 236 WLTIGLREGKNREIRRAMEEVGYPVNRLLRISYGPFQL 273 >UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q01SF5_SOLUE Length = 249 Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 92/235 (39%), Positives = 133/235 (56%), Gaps = 15/235 (6%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQK+L++AG SRR+ E +++ GRV+V+G I +LG + ++ I++DG L+ + Sbjct: 4 ERLQKILSQAGVSSRRQAEKLMQEGRVTVNGSVITELGSKADLDRD-HIKVDGRLL--KA 60 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 QI +A KP+G + T +DPEGR TV D L +++ R VGRLD ++ GLLL T Sbjct: 61 PKHQIY--IALNKPKGTVTTVHDPEGRETVMDLLHRVK-ERVYPVGRLDYHSEGLLLLTN 117 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLE---DGPAAFKTIKFSGGE 178 DGELAN +M + +E+ Y V+V G + + GV L PA K + Sbjct: 118 DGELANSIMSAATHLEKTYVVKVTGTLTAEQEEKFRTGVPLSGRRTLPAGLKLL----SR 173 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELD 233 N WY V LTEGRN ++R ++ G V +L RVR G I L L G + LD Sbjct: 174 AENPWYEVKLTEGRNNQIRMMFRHFGKLVEKLKRVRIGPIELGT-LKTGAFRYLD 227 >UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0LG91_HALO1 Length = 553 Score = 137 bits (346), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 97/256 (37%), Positives = 144/256 (56%), Gaps = 17/256 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGL-KIRIDGHLISVRE 61 +LQ+ L++ G +RR+ E +I +G VSV+G ++ +LG +V PG ++ + G + E Sbjct: 6 RLQRYLSQCGVAARRKAEELITSGVVSVNGQRVTELGTKV--VPGRDRVSVRGEAVYPEE 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + KP+G L DPE RPTV + L L AR + VGRLD + G+LL T Sbjct: 64 PFYVLLN-----KPKGCLTAVTDPENRPTVMEYLHGL-PARVVPVGRLDFYSEGVLLLTN 117 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIKFSGG 177 DG+L+ RL P VE+ Y V+V QV + L L +GV+LEDG PA + G Sbjct: 118 DGDLSARLQSPRHHVEKTYHVKVRDQVTERHLEVLRQGVRLEDGTVTRPAQIDML--GGT 175 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 + + W +TLTEG++R++ R+ +G V +L RV +G + GL G EL A+ Sbjct: 176 KSRHDWLVITLTEGKSRQIHRMLGVLGYTVMKLQRVAFGGLTF-HGLRVGDARELTQAEV 234 Query: 238 NYLRELVELPPETSSK 253 N LRELV LP +T ++ Sbjct: 235 NDLRELVGLPKDTVAR 250 >UniRef50_Q0G3T3 Pseudouridine synthase n=4 Tax=Alphaproteobacteria RepID=Q0G3T3_9RHIZ Length = 639 Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 88/217 (40%), Positives = 125/217 (57%), Gaps = 6/217 (2%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ + LARAG SRR+ E++I GRV V+GKI ++V P +I +DG L+ E Sbjct: 185 RIARRLARAGIASRRDAEAMIVDGRVKVNGKIID-SPALDVKPTDRIEVDGALLPQAER- 242 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 R+ ++KP G + T DPEGR TVFD LP+ R +++GRLD+NT GLLL T DG Sbjct: 243 ---TRLWLFHKPAGTVTTNKDPEGRRTVFDMLPEDM-PRVLSIGRLDINTEGLLLLTNDG 298 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 L+ L PS R Y VR G + AKL +L G+ ++ +G N W Sbjct: 299 GLSRVLELPSTGWLRRYRVRAHGSITQAKLDELRNGISVDGVFYGAIEATLDREQGSNVW 358 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 + L EG+NREV+ + A+G++V+RLIR+ YG L Sbjct: 359 ITLGLREGKNREVKNVLGALGLEVNRLIRLSYGPFQL 395 >UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYA4_9BACT Length = 638 Score = 137 bits (345), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 89/239 (37%), Positives = 134/239 (56%), Gaps = 10/239 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K+LA G SRR+ E +I AG V+VDG++ + G RV+ + I +DG + Sbjct: 27 RLHKILAHRGVASRRKSEQLIAAGSVTVDGEVVTEPGTRVDPKHQV-ILVDGRPLP---- 81 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E + +YKP+G + T DPEGRPT+ D P + + +GRLD T G LL T + Sbjct: 82 REPETFLFLFYKPKGVVSTLFDPEGRPTLRDYFPGI--DPLLHIGRLDFQTEGALLLTNN 139 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG-VQLEDGPAAFKTIKFSGGEGIN 181 G+L+ R++HP E+ R Y V++ G + A L ++RG ++L+ P + N Sbjct: 140 GDLSQRILHPRFEIPRTYLVKIQGGMSPAHLERMARGEIRLDGRPVVPLELVPERQTSTN 199 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 WY +TLTEGRNREVRRL+E + V +L+R +G + L GL G + + +T L Sbjct: 200 AWYRITLTEGRNREVRRLFETLNYFVLKLVRTAFGPLTL-AGLEPGEYRTVTPHETELL 257 >UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD7 Length = 247 Score = 137 bits (344), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 90/246 (36%), Positives = 133/246 (54%), Gaps = 12/246 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISV 59 M E+LQKV+A++G+ SRR+ E +I+ G+V+V+G++ LG +V T I ++G LI+ Sbjct: 1 MEERLQKVIAQSGYTSRRKAEELIQQGKVTVNGEVVTVLGTKV--TKKDTICVNGKLINK 58 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 + + +YKPE +CT +D R V D R VGRLD +T G L Sbjct: 59 EDKVYYL-----FYKPEKCVCTMSDEHDRTCVADYFAD-SNERVYPVGRLDYDTTGALFM 112 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGG-- 177 T DGE AN +MHPS +E+ Y V V G + A+ L +G+ LE I +G Sbjct: 113 TNDGEFANLIMHPSSHLEKVYEVSVKGLLTKAEKNQLEKGIYLEGVKTLPCEIAITGNDE 172 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 E + L EG+NR++++++E VG V RL R+ G I L KGL G + L + Sbjct: 173 EHGTTMLLIRLVEGKNRQIKKMFEEVGHPVKRLRRIMIGPIDL-KGLTPGTYRRLKPHEV 231 Query: 238 NYLREL 243 N LR + Sbjct: 232 NVLRTM 237 >UniRef50_Q1RJR2 Uncharacterized RNA pseudouridine synthase RBE_0321 n=15 Tax=Rickettsia RepID=Y321_RICBR Length = 229 Score = 136 bits (343), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 126/218 (57%), Gaps = 8/218 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++L K+++ AG SRR+ E +I G+V V+G I V ++ + G LI+ Sbjct: 2 QRLAKLISNAGICSRRDAEKLILDGQVKVNGIIVT-SPATNVDTDNQVEVSGSLIT---- 56 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + Q R+ YYKP G + T DP R TVF++L L R I++GRLD+N+ GLLL T + Sbjct: 57 SSQKSRLWIYYKPVGLITTHKDPLSRKTVFEQLTGL--PRVISIGRLDLNSEGLLLLTNN 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA + PS +++R Y VR +G D L+ + ++++ ++IK N Sbjct: 115 GDLARQFELPSSKLKRVYHVRAYGN-PDPLLKSNYKNLEIDGIFYNPQSIKLLRKNSTNS 173 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 W V L EG+NRE+RR++E G++V++LIR YGD L Sbjct: 174 WLEVILFEGKNREIRRIFEHFGLKVNKLIRTEYGDFKL 211 >UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organisms RepID=A4CJ52_9FLAO Length = 303 Score = 136 bits (343), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 128/239 (53%), Gaps = 10/239 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A AG SRRE ++ I AG V+V+GK I ++G +V+ P ++R DG L+ RE Sbjct: 71 RLNKYIANAGICSRREADTYIAAGNVTVNGKTITEMGYKVQ--PTDEVRFDGRLLQ-RER 127 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E + KP + T D +GR TV + + + AR + VGRLD NT GLLLFT D Sbjct: 128 KEYVL----LNKPRNFITTTRDEKGRRTVMELISRASNARLVPVGRLDRNTTGLLLFTND 183 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA +L HP V + Y V + A L L G++LEDG + G + Sbjct: 184 GELAKKLTHPKHGVRKIYHVELDKTFKSADLGKLREGLELEDGRIEVDEASYIDGAS-KK 242 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 V L GRNR VRR++E +G QV +L RV + K LPRG W L + LR Sbjct: 243 EVGVELHSGRNRIVRRIFEHLGYQVVKLDRVVLAGLT-KKDLPRGHWRHLTEQEVINLR 300 >UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7V9_9PLAN Length = 811 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 96/241 (39%), Positives = 134/241 (55%), Gaps = 10/241 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISV 59 ++E+LQKVLA AG GSRR+ E +I GRV VDGK+ +LG RV+ IR+DG + Sbjct: 32 VAERLQKVLAAAGIGSRRDCEELITEGRVDVDGKVVTELGTRVDPV-KQTIRVDGEAL-- 88 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 +++ V+ KPEG + T D GR V D +P R AVGRLD + GL++ Sbjct: 89 -RKPQRLYFVV--NKPEGVVTTNYDQAGRTRVIDLVPT--DERVFAVGRLDRASEGLIIV 143 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DGE ANR+ HP V + Y VRV G+ A+L L RG+ L DG I+ Sbjct: 144 TNDGEFANRVTHPRYGVTKTYLVRVAGEASTAELAKLRRGIHLSDGFCKVDAIQVKRRHK 203 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + + L+EG+NRE+RR+ +G +V +L R+ G + L + LP G W LD + Sbjct: 204 QSTDMVIQLSEGKNREIRRILARIGHKVLKLKRLAVGSLKLGE-LPLGAWRWLDKQEIER 262 Query: 240 L 240 L Sbjct: 263 L 263 >UniRef50_A5IXL5 Pseudouridine synthase n=3 Tax=Mycoplasma RepID=A5IXL5_MYCAP Length = 246 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/245 (33%), Positives = 140/245 (57%), Gaps = 18/245 (7%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++QK++A++G SRR+ E +I G V V+G + +GD+ + +I+++G +I++ ++ Sbjct: 6 RVQKLIAQSGLMSRRDAEKMISKGLVFVNGIKSSIGDKASMND--EIKVNGKIINLTKNT 63 Query: 64 EQICRVLAYY---KPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 V YY KP+ + T DP+GR TV D + R + VGRLD NT G+LL T Sbjct: 64 -----VFKYYLLNKPKNTITTSKDPKGRHTVIDLIN--TSERIVPVGRLDRNTTGVLLLT 116 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TD EL N+L HP E+ER Y R+ + + R+L+ G+++ DG +++ + + Sbjct: 117 TDYELVNKLTHPKYEIERVYRARIDSPLTLKEFRELNAGIEI-DGKMSYQIV----DQVD 171 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + Y ++L G V++L+E +G V L RV Y ++ + K LP G + EL + + L Sbjct: 172 TKSYLISLHVGSYHHVKKLFEKIGHSVLTLKRVSYANLTVDK-LPEGMYRELTIKEVKNL 230 Query: 241 RELVE 245 + LVE Sbjct: 231 KLLVE 235 >UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCEF2E Length = 296 Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 127/242 (52%), Gaps = 8/242 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISV 59 M E+LQK+L+ AG SRR E +I AGRV+VDG + +LG + + I +D I Sbjct: 1 MEERLQKILSNAGVASRRAAEDLIRAGRVAVDGVAVTELGRKFD-PANHTITVDSKPIHS 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 E I KP G L T D GR TV D LP AR VGRLD +T G+LL Sbjct: 60 DEKRFYIL----LNKPRGYLSTARDDRGRKTVLDLLPDF-PARLYPVGRLDADTEGVLLI 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG + L+HP E+++ Y V G V + L L RG+ LEDG A ++ + Sbjct: 115 TNDGAITQGLLHPRFEIDKVYHAEVAGPVTEGGLTRLRRGILLEDGMTASAKLRILRADK 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + EGRNR+VRR++ A+G +V L RVR+ + L +GL G + L + + Sbjct: 175 GYTVVETIIHEGRNRQVRRMFAAIGCRVCALRRVRFAMLTL-RGLSCGSFRHLTRDEIHE 233 Query: 240 LR 241 LR Sbjct: 234 LR 235 >UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F269_9PROT Length = 289 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 90/248 (36%), Positives = 135/248 (54%), Gaps = 11/248 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ + LA G SRRE + I+AGRVS++G++ + V V G + +D L+ ++ Sbjct: 43 ERINRYLAHCGLCSRREADRWIQAGRVSINGQLIE-APGVIVKSGDTVMVDDKLVEPQQG 101 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 I Y KP+G+LC+R D + RP ++D + + ++GRLD++T GLL+ T D Sbjct: 102 HTYIL----YNKPKGQLCSRLDKKKRPLIYDFIDVAPNVQ--SIGRLDMDTEGLLMLTDD 155 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG---VQLEDGPAAFKTIKFSGGEG 179 G L L HP+ +V REY RV G V+ L L RG + D A++ S G Sbjct: 156 GALTRALTHPAAKVPREYRARVAGIVELETLAKLRRGGMDIGRGDTSDAWEVTVDSESAG 215 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + W N+ + GR REVRR E G V RL+R R+G I L + +P+G W L+ + Sbjct: 216 -HTWLNIIILRGRWREVRRTLEECGHPVRRLMRTRFGPIKLDEDMPKGTWRALNRGEIRK 274 Query: 240 LRELVELP 247 LR+ V P Sbjct: 275 LRDRVINP 282 >UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2S0_9FIRM Length = 290 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/245 (37%), Positives = 131/245 (53%), Gaps = 8/245 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISV 59 M E+LQK+++ AG SRR E++I AGRV+VDG + LG + + +I +DG I Sbjct: 1 MEERLQKIISNAGAASRRAAEALIRAGRVTVDGLPVTALGGKYDAARH-EIAVDGTPIRR 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 E I +KP G L T D GR TV D LP AR VGRLD +T GLL+ Sbjct: 60 NERRFYI----LLHKPRGCLSTAYDDRGRRTVLDLLPHF-PARLYPVGRLDADTEGLLII 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG + L+HP E+++ Y V G V + L L G+ L+DG A ++ EG Sbjct: 115 TNDGAMTQGLLHPRFEIDKVYRAEVTGNVTEDGLTALRNGILLDDGRTAPARLRVLHREG 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + EGR R+VRR++ A+G +V RL RVR+ + L G+ G + L + + Sbjct: 175 ERTVVETIIHEGRKRQVRRMFAAIGCRVQRLCRVRFAMLTL-DGVSCGSFRHLTSDEIHE 233 Query: 240 LRELV 244 L+++ Sbjct: 234 LKKIA 238 >UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICF2_9CLOT Length = 235 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 130/237 (54%), Gaps = 16/237 (6%) Query: 1 MSE-KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLIS 58 MSE +LQK LA AG SRR+ E +I+ GRV+V+ I + +G VT + +DG ++ Sbjct: 1 MSEIRLQKYLAHAGVASRRKAEEMIKQGRVAVNNVIIENMG--ATVTCNDVVTVDGKPVT 58 Query: 59 VRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 E+ I KP G + T D GRP V D L K G R VGRLD +T GL+L Sbjct: 59 TEEAKVYIM----LNKPVGYVSTSKDQFGRPAVID-LVKDAGKRLYPVGRLDYDTSGLIL 113 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED---GPAAFKTIKFS 175 T DG+ RL HP EV + Y + G D ++ G++++D PA F+ + Sbjct: 114 LTNDGDFTYRLTHPKHEVNKVYEAVISGFPDKNEITRFETGLKIDDYQTSPAEFEVL--- 170 Query: 176 GGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 +GIN +T+ EG+NR+VR++ EA+G +V L R++ G I L + LP G W L Sbjct: 171 NKKGINTLVRITIHEGKNRQVRKMCEAIGHKVLTLKRIQIGPIAL-ENLPEGKWRHL 226 >UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQL4_9PLAN Length = 517 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 93/241 (38%), Positives = 135/241 (56%), Gaps = 10/241 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRE 61 E+L KVLA AG SRR+ E++I+ GRV VDGK + +LG +V+ +I +DG + Sbjct: 17 ERLHKVLAFAGIDSRRKCEALIQEGRVEVDGKFVTELGMKVDPE-HQEILVDGQRLKF-- 73 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 +++ +L KP G L T DP GR V D +P+ R +GRLD + GL++ T Sbjct: 74 -GKRVYYML--NKPPGVLSTNFDPAGRTRVIDMVPQ--DVRLFTIGRLDRASEGLIVVTN 128 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGELANRL HP E+E+ Y V V G + + + RGV L +G ++ + Sbjct: 129 DGELANRLAHPRYEIEKTYRVEVAGHPEPDAITFVRRGVHLAEGFVQPVSVVMKRKNKQS 188 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 V L EG+NRE+RRL +G +V RL R+ G + L + +P G + EL A+T LR Sbjct: 189 TTLEVILDEGKNREIRRLMAKIGHKVLRLKRIAMGPLRLGE-MPEGAFRELKSAETKALR 247 Query: 242 E 242 + Sbjct: 248 D 248 >UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=A4J3M3_DESRM Length = 309 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/221 (38%), Positives = 126/221 (57%), Gaps = 7/221 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISV 59 M E+LQK+LA+AG SRR E +I +G+V V+GK + ++G +V+ T KI + G + Sbjct: 1 MEERLQKILAKAGVASRRHSEELIISGQVKVNGKTVTEMGLKVDPTKD-KIEVKGKPLPP 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 E L KP G + T +D R TV D L + R VGRLD ++ GLLL Sbjct: 60 LEKKV----YLLMNKPRGYVTTLSDERDRKTVVDLLKGVE-QRVYPVGRLDYDSEGLLLL 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DGEL L HP +V++ Y +V G + +L+ +++G+ LEDGP A ++ +G Sbjct: 115 TNDGELTQALTHPKHKVKKTYLAKVDGIPETEELKAMAKGLVLEDGPTAPADVRLAGTGD 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 +++ EGRNR+VRR+ E +G +V RL R R G + L Sbjct: 175 NRALLEISIHEGRNRQVRRMCEHIGYKVLRLRRTRIGTLEL 215 >UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterineae RepID=A4QE19_CORGB Length = 320 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/252 (37%), Positives = 129/252 (51%), Gaps = 21/252 (8%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLK-------IRIDGHL 56 +LQKVLA+AG SRR E +I+ GRV V+ DR+ T G++ IR+DG Sbjct: 81 RLQKVLAQAGVASRRHAEILIDQGRVEVN-------DRIVTTQGVRVNPNNDVIRVDGVR 133 Query: 57 ISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTC 114 I + E E KP G T +D GRP V D + + G R VGRLD +T Sbjct: 134 IHINEDLE----YFVLNKPRGMHSTMSDELGRPCVGDLVSEKTASGQRLFHVGRLDADTE 189 Query: 115 GLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF 174 GLLL T DGELANRLMHP EV + Y V G+ + + L GV+LEDGPA + Sbjct: 190 GLLLLTNDGELANRLMHPKYEVSKTYLATVRGEATNKLVSALRDGVELEDGPAKADFAQI 249 Query: 175 SGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDL 234 + + EGR VRRL++ +G V RL+R + + L P G L+ Sbjct: 250 IDVFQGKSLLRIEIHEGRKHIVRRLFDELGFPVERLVRTKLHTVQLGDQKP-GSLRALNS 308 Query: 235 AQTNYLRELVEL 246 ++ L ++V+L Sbjct: 309 SELTSLYKVVQL 320 >UniRef50_C6B2K7 RNA-binding S4 domain protein n=20 Tax=Alphaproteobacteria RepID=C6B2K7_RHILS Length = 698 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 91/221 (41%), Positives = 130/221 (58%), Gaps = 10/221 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +E++ KV+ARAG SRR+IE +I GRV+++G++ V VT +I +DG I E Sbjct: 51 AERISKVMARAGVASRRDIERMIMEGRVTLNGRVLDT-PVVNVTLADRIEVDGVPIRGIE 109 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 R+ Y+KP G + T DPEGR TVFD LP+ R +++GRLD+NT GLLL T Sbjct: 110 R----TRLWLYHKPTGLVTTNADPEGRSTVFDNLPEEL-PRVMSIGRLDINTEGLLLLTN 164 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIK--FSGGEG 179 DG LA L P+ R Y VR G++D L L G+ + DG + +I+ +G Sbjct: 165 DGGLARALELPATGWLRRYRVRAHGEIDQDALDKLKDGIAV-DG-VLYGSIEATLDRTQG 222 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 N W + L EG+NRE++ + A+G+ V+RLIR+ YG L Sbjct: 223 SNVWITMGLREGKNREIKNVLGALGLDVNRLIRISYGPFQL 263 >UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C7M7R0_CAPOD Length = 387 Score = 133 bits (335), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 129/241 (53%), Gaps = 10/241 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A AG SRR + I AG V+V+G++ LG RV+ P ++R DG L+S E Sbjct: 155 RLNKYIADAGICSRRNADMYISAGNVTVNGEVMTTLGYRVK--PTDEVRFDGKLLS-SEK 211 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E I KP+G + T ND +GR TV D + R + VGRLD T GLLL T D Sbjct: 212 KEYIL----LNKPKGFITTTNDEKGRKTVMDLVANATNVRILPVGRLDRATTGLLLLTND 267 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GEL +L HP+ V + Y V + ++D + G++LEDG I + + N+ Sbjct: 268 GELTKKLTHPTHGVRKIYHVILDRKLDYKDFMKVQDGLELEDGLIEVDEISYVNDKPKNE 327 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + GRNR VRR++E +G QV +L RV + + K LPRG W L + LR Sbjct: 328 I-GIKIHSGRNRIVRRIFEHLGYQVEKLDRVVFAGL-TKKDLPRGHWRRLTQQEVINLRN 385 Query: 243 L 243 + Sbjct: 386 M 386 >UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales RepID=C7H5G4_9FIRM Length = 294 Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 91/243 (37%), Positives = 137/243 (56%), Gaps = 12/243 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++QK++A G SRR E II GRV V+G K+GD+++ + + +D I ++++ Sbjct: 21 ERIQKIMAEQGLCSRRAAEQIIAEGRVKVNGHPVKVGDKMDPNRDV-LHVDDERIYIQKN 79 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 Q LA YKP G + T +D GR TV + + + AR VGRLD ++ GLLL T D Sbjct: 80 --QQLYYLALYKPRGYVTTASDELGRKTVMELVSDI-PARLYPVGRLDKDSEGLLLMTND 136 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIKFSGGE 178 G A + HPS + + Y V V + D++++ +S GV L+DG P A + G Sbjct: 137 GAFAQAVTHPSGGISKLYRVTVQPRADESQILKMSSGVVLDDGTKTMPCAINVVTDEPGR 196 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 + + +TL EG+NRE+RR+ EAVG++V RL R G + L P G + EL A+ + Sbjct: 197 TVME---MTLKEGKNREIRRMCEAVGLEVVRLKRNAEGVVKLGMLKP-GTYRELTKAEVS 252 Query: 239 YLR 241 LR Sbjct: 253 GLR 255 >UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A3CPQ5_STRSV Length = 242 Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 85/250 (34%), Positives = 142/250 (56%), Gaps = 26/250 (10%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-------KLGDRVEVTPGLKIRIDGHL 56 ++ K +A AG SRR+ E +I G+VS++G++ K GDRVEV +G Sbjct: 2 RINKYIAHAGIASRRKAEELIRQGKVSINGQVVRELATNVKSGDRVEV--------EGQP 53 Query: 57 ISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGL 116 I + E++ +L KP G + + +D +GR TV + LP+++ R VGRLD +T G+ Sbjct: 54 IY---NEEKVYYLLN--KPRGVISSVSDDKGRKTVVELLPQVK-ERIYPVGRLDWDTSGI 107 Query: 117 LLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLE---DGPAAFKTIK 173 L+ T DG+ + ++HP E+++ Y RV G + LR L+RG+++E PA ++ IK Sbjct: 108 LILTNDGDFTDEMIHPRNEIDKVYVARVKGLANKEVLRPLTRGIEIEGRKTKPAVYEIIK 167 Query: 174 FSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELD 233 + +T+ EGRN +V+++++AVG+QV +L R R+G + L GL G + +L Sbjct: 168 VDPAKN-RSVVQLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGHLDLT-GLKPGEYRKLS 225 Query: 234 LAQTNYLREL 243 + + L L Sbjct: 226 KKEVSQLHTL 235 >UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1F236_ACIC5 Length = 406 Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 99/285 (34%), Positives = 147/285 (51%), Gaps = 26/285 (9%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQK+LA AG SRR+ E +I AGRV V+G++ ++G + + IR+DG L+ E Sbjct: 24 ERLQKILASAGVASRRKAEELILAGRVQVNGQVVTEMGFKADAA-SDHIRVDGKLLQGPE 82 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLLF 119 R KP+G + T +DPEGR TV + G R VGRLD + GLLL Sbjct: 83 K----LRYFMLNKPKGYVTTVSDPEGRHTVMEFFHGRGKGGERLYPVGRLDYASEGLLLM 138 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----------PAAF 169 T DG LAN L S VE+ Y V+V G+ + +L + G+ ++ G PA Sbjct: 139 TNDGALANTLTKASSHVEKVYLVKVSGRPTEEQLEQIRAGIMIDRGRPGEGRVMTAPAGV 198 Query: 170 KTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGW 229 + ++ + N W+ +TL EGRNRE+R+++E G V ++ R+ YG PL + G Sbjct: 199 RMVR----DAENPWFELTLIEGRNREIRKMFEETGHFVEKIRRIGYG--PLVLDVEPGEV 252 Query: 230 TELDLAQTNYLRELVELPPETSSKVAVEKDRRRM--KANQIRRAV 272 EL+ + + LR + K A + R M KA R++ Sbjct: 253 RELNPEEVDSLRRAAQRKRAPKPKAATKTKRLTMLPKAKPARKSA 297 >UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Z61_SOLUE Length = 264 Score = 133 bits (334), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 131/238 (55%), Gaps = 9/238 (3%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAE 64 L++V ++AG GSR + I G+V V+GK+ D K+ ++G + + Sbjct: 16 LERVFSKAGAGSRTDARKWISGGKVRVNGKVVLNPDHWVDPDHDKVTLEGKPLKAATKS- 74 Query: 65 QICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIA-VGRLDVNTCGLLLFTTDG 123 + YKP+G L T DPEGRPTV+ L + +W++ VGRLD++T GLL+ T D Sbjct: 75 ----YILLYKPKGYLTTYRDPEGRPTVYALLGDV--GKWLSPVGRLDLDTSGLLVLTNDN 128 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 + A R+ +P +V + Y ++ + D ++ L GV+L DGP +K + + Sbjct: 129 DFAERITNPEHKVPKTYQIKAATVLSDEQIERLRAGVELSDGPTRPAEVKRLRDGPKHTF 188 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +T+TEGRNR+VRR+ EAV +VS+L+R G + + + LP G W L + + LR Sbjct: 189 LEMTITEGRNRQVRRMLEAVESKVSKLVRTAIGPVRIGE-LPIGKWRNLTADEVHELR 245 >UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae RepID=C8WAL4_ATOPD Length = 279 Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 91/282 (32%), Positives = 140/282 (49%), Gaps = 37/282 (13%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQ+ LARAG SRR E ++ +GRV+V+G++ +LG +V+ L+ V Sbjct: 10 RLQRFLARAGVASRRGSERLMTSGRVTVNGQVVTELGSKVD-----------PLVDVVAV 58 Query: 63 AEQICRV------LAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGL 116 +C + L KP G L T DP+GRPT+ D +P VGRLD++T GL Sbjct: 59 DGVVCSIAEKPVYLMLNKPAGYLTTMKDPQGRPTIVDMVPTDTYPGLFPVGRLDMDTTGL 118 Query: 117 LLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF-- 174 L FTTDG++A L+HPS+ V + Y V G + +L L G++LEDGPAA ++ Sbjct: 119 LFFTTDGQMAQELLHPSKHVWKHYVAHVVGTPTEEQLNRLREGIELEDGPAAPAEVEIIS 178 Query: 175 ----------------SGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI 218 +GG N +VT+ EGR +V+++ A+ +V L R +G + Sbjct: 179 DDVKMKNLLAPQGLGKTGGGEPNALVSVTIREGRKHQVKKMLLAIHHRVLALHRDTFGPL 238 Query: 219 PLPKGLPRGGWTELDLAQTNYLRELVELPPETSSKVAVEKDR 260 L + + G W L + L + P TS + + + Sbjct: 239 HLTR-VKEGEWRLLTEEEVTALERTIGREPGTSPIMPLNTSK 279 >UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=B2A4P2_NATTJ Length = 238 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 86/244 (35%), Positives = 140/244 (57%), Gaps = 11/244 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK ++RAG SRR+ E +I+ GRV+V+G+ I +LG ++ +++DG I+ ES Sbjct: 2 RLQKFMSRAGIASRRKSEELIQQGRVTVNGQVITRLGTKINPDTD-TVKVDGEPITQEES 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 I KP+ + +++DP+GR TV D L +++ R VGRLD ++ GL+L T D Sbjct: 61 NVYIM----LNKPKDYITSKDDPQGRKTVMD-LIQVK-ERVYPVGRLDYDSRGLVLLTND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRLMHP + + Y V+V KL +L G+ LE+G ++ + N Sbjct: 115 GELANRLMHPKYNIPKTYMVKVDKLPLQDKLDNLVNGIYLEEGLCKADHVEILDTK--NN 172 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + L+EGR R++RR+ ++G++V L R G + L K L G + +L + + +++ Sbjct: 173 ILKIILSEGRKRQIRRMLASLGIEVKDLKRDSLGTLTL-KDLSEGNYRKLTKDEIDNIKK 231 Query: 243 LVEL 246 L L Sbjct: 232 LAGL 235 >UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY92_THERP Length = 282 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 104/279 (37%), Positives = 147/279 (52%), Gaps = 14/279 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRE 61 ++LQ+VLA G SRR+ E +I AGRV+VDG + + LG +V+ +I +DG + Sbjct: 8 QRLQRVLAAHGVASRRKAEELILAGRVTVDGVVVRELGRKVD-PERQEICVDGKPLH--- 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFD--RLPKLRGARWIAVGRLDVNTCGLLLF 119 + R + +KP G + T D GR TV D ++P+ R + VGRLD ++ GLLL Sbjct: 64 --SEPRRYIVLHKPVGYITTTADEYGRKTVLDLVQVPE----RVVPVGRLDRDSSGLLLL 117 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG+L R+ HP E+E+EY V V G L RGV ++ P + ++ E Sbjct: 118 TNDGDLIYRITHPRYELEKEYEVLVDGFPPPEVEEALRRGVPVDGRPVRIRRLEAIRVEP 177 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 Y V + EGRNR +RR++E VG V RL RVR G + L LP G W +L ++ Sbjct: 178 QGTVYRVVIHEGRNRIIRRVFERVGYPVLRLQRVRVGPLRL-GDLPPGRWRDLTASEVAA 236 Query: 240 LRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQV 278 LR V LP V E+ R + RR +R S V Sbjct: 237 LRRAVGLPEFPEGAVGRERKARGGRGMPARRGDRRPSGV 275 >UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGQ8_EGGLE Length = 282 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 93/273 (34%), Positives = 139/273 (50%), Gaps = 38/273 (13%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK LARAG SRR E+++ AGRV+V+GK+ +LG +V+ ++ +DG ++ + + Sbjct: 12 RLQKFLARAGAASRRGSENLMTAGRVTVNGKVVTELGSKVDPLVD-EVAVDGAVVRLADG 70 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 I +KP G + T +DP+GR TV + +P R +GRLD +T GLLLF+TD Sbjct: 71 PVTIM----LHKPAGFVTTMSDPQGRRTVAELVPTERYPGLFPIGRLDFDTTGLLLFSTD 126 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGG----- 177 GEL N L+HP V + Y V G+ + L L RG++L+DGP ++ G Sbjct: 127 GELGNGLLHPKHHVTKRYLACVEGRPTERDLALLRRGIELDDGPTQPADVRVVEGGAARH 186 Query: 178 -----------------------EGINQWYNVT---LTEGRNREVRRLWEAVGVQVSRLI 211 EG ++ + EGR R+V+R+ AVG V L Sbjct: 187 AERLLEIPAAVPPRSSKEYAAVCEGRATRRSIVRLGIREGRKRQVKRMLAAVGHPVLALH 246 Query: 212 RVRYGDIPLPKGLPRGGWTELDLAQTNYLRELV 244 R +G + L LPRG W LD + L + + Sbjct: 247 RDSFGPLEL-GDLPRGAWRALDAEEVAALHQAI 278 >UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0N6F1_9FIRM Length = 241 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 88/248 (35%), Positives = 134/248 (54%), Gaps = 18/248 (7%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISV-- 59 E+LQK +A +G+ SRR+ E +I G+V V+GK+ +LG +V+ G LI+V Sbjct: 2 ERLQKAIAASGYTSRRKAEDLIVQGKVEVNGKVVTELGTKVK---------QGDLITVEG 52 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 + + +YKP+G +CT +D RP + D +++ R VGRLD +T GL++ Sbjct: 53 KPLVGENKVYYVFYKPKGCVCTLDDEFDRPIITDYFTEVK-ERIYPVGRLDFDTTGLIIM 111 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLE---DGPAAFKTIKFSG 176 + DGE AN +MHP +E+ Y V + G + L L +GV LE P K + Sbjct: 112 SNDGEFANMIMHPRSHLEKIYEVSIKGLITGPTLNKLEKGVYLEGVKTLPCKIKVVD-KD 170 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 E + L EG+NR+V++++E+VG V RL RV G I L KGL G + L + Sbjct: 171 TEHKTTMLKIKLVEGKNRQVKKMFESVGHPVKRLHRVSIGGINL-KGLTPGRYRILKPQE 229 Query: 237 TNYLRELV 244 L++LV Sbjct: 230 VKDLKKLV 237 >UniRef50_A0CY18 Chromosome undetermined scaffold_30, whole genome shotgun sequence n=2 Tax=Paramecium tetraurelia RepID=A0CY18_PARTE Length = 337 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 130/237 (54%), Gaps = 14/237 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRI---DGHLISVR 60 +L K LA+ SRRE E +IE+G + VDGK K+ + VT KI++ +G + + Sbjct: 37 RLSKYLAQTSVCSRREAEKMIESGMILVDGK--KVESNIPVTSENKIQVFTKNGEKMPTK 94 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLR---GARWIAVGRLDVNTCGLL 117 +S +V +YKP G +C+ NDP RP+ +D KLR I+VGRLD N+ GL+ Sbjct: 95 QST----KVWIFYKPVGMICSHNDPFKRPSFYD-FAKLRLKTDQHIISVGRLDFNSEGLI 149 Query: 118 LFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGG 177 + T DGELA + P +++R Y VRV+G + KL+ + G+ + + Sbjct: 150 VVTNDGELARCMELPETKLQRIYRVRVYGTFTEEKLKKIRNGITIAGVNYGPYWVNVENR 209 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDL 234 + N W + L +G+NRE+R++ + ++V+RLIR YG L GL G + E + Sbjct: 210 QSRNTWLIMRLEQGKNREIRKVMQKFDLRVNRLIRQSYGPYKL-MGLKPGDFYEAQI 265 >UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr0361 n=21 Tax=Cyanobacteria RepID=Y361_SYNY3 Length = 249 Score = 131 bits (329), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 102/256 (39%), Positives = 135/256 (52%), Gaps = 18/256 (7%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M+E++QK+L++ G SRR E +I AGRVSV+GK+A LGD+ + + +DG I Sbjct: 1 MAERIQKLLSQWGIASRRHAEEMILAGRVSVNGKVANLGDKADPQQDF-LSVDGKQIKAD 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLL 118 I L KP L T +DP GR TV D LP+ RG VGRLD N+ G LL Sbjct: 60 NRPRDI--YLLVNKPRDVLSTCDDPRGRKTVLDLLPQDLQRGKGLHPVGRLDRNSTGALL 117 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIKF 174 T DGEL RL HP + + Y V + G D L G+ L DG PA + I Sbjct: 118 LTNDGELTLRLTHPRYHLPKTYDVWLEGNPSDEDLEKWRSGMML-DGKKTLPATLEVI-- 174 Query: 175 SGGEGINQWY-NVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLP---KGLPRGGWT 230 E +Q + VTLTEGRNR++RRL E +G+ V +L R G + L K L G + Sbjct: 175 --SENKDQIHLLVTLTEGRNRQIRRLAEELGLTVLKLHRRTIGPLQLHTRGKVLGSGQFR 232 Query: 231 ELDLAQTNYLRELVEL 246 L A+ L++ V L Sbjct: 233 FLSPAEIRLLKKQVNL 248 >UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium RepID=A5TWE7_FUSNP Length = 234 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 130/240 (54%), Gaps = 13/240 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ K L+ G SRR I+ IE GR++V+G A G +++ I IDG I + Sbjct: 2 RINKFLSTLGIASRRAIDKYIEEGRITVNGNTATTG--MDINENDNIFIDGKKIKTSINE 59 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 E++ +L KP L + +D GR TV D + R +GRLD T GL+L T DG Sbjct: 60 EKVYFMLN--KPLEVLSSSSDDRGRKTVVDLIKT--DKRIFPIGRLDYMTSGLILLTNDG 115 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG---PAAFKTIKFSGGEGI 180 EL NR++HP E+ ++Y +++ G++ ++ +L +GV L+DG PA IK+ + Sbjct: 116 ELFNRVVHPKSEIYKKYYIKILGELKKEEIDELKKGVLLDDGKTLPAKISGIKYDKNK-- 173 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +++ EGRNR++RR+ E +V L R + G++ L LP G + EL + YL Sbjct: 174 -TSMFISIREGRNRQIRRMIEKFEYKVLMLRREKIGELALG-DLPEGKYRELTKQEVEYL 231 >UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNA2_CRYCD Length = 296 Score = 130 bits (328), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 128/238 (53%), Gaps = 7/238 (2%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK LARAG SRR E +I AGRV+V+G I +LG +V+ ++ +DG +++ Sbjct: 51 RLQKFLARAGVASRRGSERLISAGRVAVNGIVITELGTKVDPLVD-EVCVDGAIVTWGAP 109 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 A LA KP G + T D GR V D +P + +GRLD +T GLLLF+TD Sbjct: 110 A----VTLALNKPAGIITTMKDLRGRRCVADIMPTEQYPGLFPIGRLDQDTTGLLLFSTD 165 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G L N L+HPS V + Y + G + A L L+ G+ L+DG A + + Sbjct: 166 GNLGNALLHPSHGVSKVYRATIEGSIGQAALEQLASGILLDDGMTAPARVSVVQAGKKHS 225 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + L EGR +V+R+ +AVG V +L R +G I L GL G + L+ A+ + L Sbjct: 226 VIELELHEGRKHQVKRMCQAVGHPVVKLHRASFGPIDL-AGLATGAYRRLEGAELSVL 282 >UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7P2_SPHTD Length = 337 Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 98/262 (37%), Positives = 139/262 (53%), Gaps = 14/262 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRE 61 E+LQ+VLA G SRR+ E +I AGRV+VDG++ + LG RV+ +IR+DG + Sbjct: 2 ERLQRVLAAHGVASRRKAEELITAGRVTVDGQVVRELGVRVDPE-RQEIRVDGKRLR--- 57 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFD--RLPKLRGARWIAVGRLDVNTCGLLLF 119 + R + KP G + T +D GR TV D ++P+ R + GRLD T GLLL Sbjct: 58 --PERRRYIMLNKPPGYITTVSDERGRRTVMDLVQVPE----RVVPAGRLDRPTAGLLLL 111 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG+L R+ HP E+E+EY V V G L L RGV ++ ++ E Sbjct: 112 TNDGDLLFRITHPRYELEKEYEVLVDGHPPPEVLDQLRRGVTVDGERVVPDQVRPLRIEE 171 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + + EGRNR VRR+ + VG V +L R R G I + +G+P G W +L + Sbjct: 172 AGTVLRIVIHEGRNRIVRRMMDRVGYPVLKLTRTRIGPIHV-RGVPLGAWRDLTPGEVMQ 230 Query: 240 LRELVELPPETSSKVAVEKDRR 261 L E V L P ++ + E RR Sbjct: 231 LLEAVGLDPASAGRPLPEPGRR 252 >UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UUP0_RHOBA Length = 395 Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 90/257 (35%), Positives = 139/257 (54%), Gaps = 19/257 (7%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGL-KIRIDGHLISVRE 61 ++ ++LA AG GSRR+ E +I GRV VDG+ I +LG V+ P L K+R+DG+ + ++ Sbjct: 26 RINQLLASAGFGSRRQCEELIREGRVDVDGETITELGTTVD--PDLQKVRVDGNYLRPQK 83 Query: 62 SAEQICRVLAYY---KPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 L YY KP G + T DP GRP V D +P R VGRLD+++ GL+L Sbjct: 84 --------LVYYVVNKPVGIVTTNRDPRGRPRVIDLVPPTE--RVFPVGRLDISSEGLIL 133 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG+LA +L HP +++ Y V V G+V ++ + G+ + +G K Sbjct: 134 LTNDGDLAQKLAHPKFGIQKVYRVVVAGEVRGETMKKMREGIYIAEGLVQVDGAKIIKAR 193 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 + L EG+NRE+RR+ G +V +L RV G + L +PRG + +L + + Sbjct: 194 TKATEMEIRLKEGKNREIRRILARFGHKVQQLRRVAIGPLKL-GDVPRGAYRKLTRDEVD 252 Query: 239 YLRELVELPPETSSKVA 255 LR ++ E ++K A Sbjct: 253 KLRRSIDA-AEKAAKTA 268 >UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (class) RepID=D2B9T7_STRRD Length = 621 Score = 130 bits (327), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 89/218 (40%), Positives = 122/218 (55%), Gaps = 7/218 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRES 62 +LQKVLA+AG SRR E +I GRV+VDG++ + G RV+ + I +DG + Sbjct: 385 RLQKVLAQAGVASRRACEDMIGDGRVTVDGQVVRRFGARVDPAKQV-IHVDGKRLPTMPD 443 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 LA KP G + T +DP+GRP++ D + R R VGRLD T GL+L T D Sbjct: 444 ----LVYLAINKPIGVVSTMSDPDGRPSLADFVAD-RTERLFHVGRLDTETEGLILLTND 498 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRL HPS V+++Y +V G+++ R L +G++LEDG A + G Sbjct: 499 GELANRLTHPSYGVQKKYWAKVPGRIERDLGRRLKKGIELEDGIAKADSFTLVQEHGQQA 558 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 V L EGR VRR+ E VG V L R+ +G + L Sbjct: 559 LVEVVLHEGRKHIVRRMLEEVGHPVIDLARIEFGPVKL 596 >UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=C2KPR0_9ACTO Length = 278 Score = 130 bits (326), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 91/221 (41%), Positives = 124/221 (56%), Gaps = 14/221 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK+L++AG SRR E +I+ GRV VDG+ + ++G ++V P +I ++G R Sbjct: 43 RLQKLLSQAGVASRRASEDLIKRGRVQVDGETVTEMG--LKVLPSARITVNGQ----RIH 96 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + +V A+ KP G + T + RP + D KL R VGRLDV T GL+L T + Sbjct: 97 TDAALQVWAFNKPVGTVSTMQPEDDRPCLGDWATKL-PQRVFHVGRLDVATAGLILLTNN 155 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPA---AFKTIKFSGGEG 179 G+LANRL+HP EV + Y V GQV + L RGV+LEDG FK ++ G Sbjct: 156 GDLANRLVHPRYEVPKTYVAMVQGQVKPGLGKVLRRGVELEDGVTKVDTFKLVEVRRGSS 215 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 I Q +TL G+NR VRRL VG VS L R G + L Sbjct: 216 IVQ---LTLHSGKNRVVRRLLSEVGHPVSALTRTAIGTLRL 253 >UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8G2X0_CHLAD Length = 567 Score = 129 bits (325), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 100/250 (40%), Positives = 143/250 (57%), Gaps = 19/250 (7%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKL-GDRVEVTPGLKIRIDGHLISVRE 61 E+LQKVLA AG SRR+ E +I AGRV+V+G++ + G RV++ ++ +DG + R Sbjct: 4 ERLQKVLASAGIASRRDCEELIAAGRVTVNGRVVTVPGTRVDLEHD-EVLVDGQPL--RM 60 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFD--RLPKLRGARWIAVGRLDVNTCGLLLF 119 A++ +L +KP G + T DP GRPTV D +P AR VGRLD+++ GL+L Sbjct: 61 PAKRTYIML--HKPAGVVSTAEDPHGRPTVVDLVDVP----ARVFPVGRLDLDSEGLILL 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLE---DGPAAFKTIKFSG 176 T DGELA L HPS EVE+EY V + + LR GV LE PA + ++ + Sbjct: 115 TDDGELAYALTHPSFEVEKEYRVLLDRALTPDALRSWRNGVLLEGEMTAPAWVELLETT- 173 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 EG+ W + L EGR R++R + + +G +V RL+RVR G + L LP W L + Sbjct: 174 PEGV--WVRIVLREGRKRQIRAVAKLLGYEVRRLVRVREGPLQL-GDLPPRAWRHLTDEE 230 Query: 237 TNYLRELVEL 246 LR V + Sbjct: 231 VAALRAHVSV 240 >UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG32_9BACT Length = 279 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 132/241 (54%), Gaps = 8/241 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGL-KIRIDGHLISVRES 62 +L + LA G GSRR++E I GR++V+G + + R ++ PG K+ +DG ++ + Sbjct: 41 RLNRYLADCGLGSRRKVEEFITTGRIAVNGNLVQDLSR-QIIPGKDKVTLDGK--PIQPA 97 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E+ +L KP G + ++ND GR TV+ LP +G + GRLD + GLL FT D Sbjct: 98 KEKFYLILN--KPRGYVVSQNDELGRKTVYSLLPP-KGKQLAYAGRLDKESEGLLFFTND 154 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 L N L HP +VE+ Y V + +++ +L L +GV++E G I Sbjct: 155 TALINLLTHPKNKVEKVYRVDINRPLNNMELNMLRKGVEIEGGKTLPAGIFVKSKNANGM 214 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + +TEGR R++R++ EAVG +V+ L R+++G + L K LP G W L+ + L Sbjct: 215 TLKIVITEGRKRQIRQMIEAVGAKVTYLKRLQFGPLKL-KDLPVGRWRLLEPGEVKALLS 273 Query: 243 L 243 L Sbjct: 274 L 274 >UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine bacterium 105 RepID=Q6SI36_9BACT Length = 255 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/221 (41%), Positives = 123/221 (55%), Gaps = 13/221 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLK-IRIDGHLISVRE 61 +LQKVLA AG SRR E +IE GRV+V+G+ + KLG + + P L IR+DG V+ Sbjct: 7 RLQKVLASAGISSRRAAERLIEVGRVTVNGRSVTKLGAKAD--PDLDDIRVDGR--KVKT 62 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 +I L KP G + TR DPEGR T+ + + +R + VGRLD ++ GL++ T Sbjct: 63 GRPRI--YLLVCKPRGYVTTRFDPEGRRTILNLISNVREYVY-PVGRLDYDSEGLVILTN 119 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF----SGG 177 DG LA RL HP VER Y VRV G A + L GV + A ++KF Sbjct: 120 DGTLAARLTHPRYGVERVYEVRVRGVPSQAAIDSLRHGVLINGRRTASSSVKFLRRLKAK 179 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI 218 N V + EGRNR+VR++ EA+G V RL R + G + Sbjct: 180 SSENALLRVAIREGRNRQVRKMCEAIGHPVIRLRRTQIGPL 220 >UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytoplasma RepID=Q2NIZ3_AYWBP Length = 245 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 130/251 (51%), Gaps = 13/251 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRE 61 ++LQKVLA A SRR+ E +I R+ V+GKI ++LG +V + I +D I+ Sbjct: 2 QRLQKVLAYANVASRRKAEILILEKRIKVNGKIISELGTKVSSSDI--ITLDDKPITKAT 59 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + + KP G L T D + RPTV D + + R +GRLD NT GLLL T Sbjct: 60 YSYFLLN-----KPNGFLSTAKDKKNRPTVLDLIEEASIQRLYPIGRLDFNTTGLLLITN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAA----FKTIKFSGG 177 DG+L +L HPS + +EY V++ + L +G+ ++ A +K S Sbjct: 115 DGDLTQKLTHPSFCIPKEYHVKINACLQKKDLSTFCKGIIIDKKYLAVCKEIDILKISYM 174 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 + W + +TEG+NR+VR++ +A+G QV +L R RY + + + L G + L + + Sbjct: 175 PKPSTWLKLVITEGKNRQVRKMMQALGYQVLKLKRYRYSFLTI-ENLTIGAYRPLKIHEI 233 Query: 238 NYLRELVELPP 248 L+ L P Sbjct: 234 KKLKTLTTQIP 244 >UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3ESK0_9BACT Length = 616 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/219 (37%), Positives = 125/219 (57%), Gaps = 9/219 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGL-KIRIDGHLISVRES 62 +LQK+LA G SRR E +I G V V+G + + +V P ++ +DG + V Sbjct: 19 RLQKLLAHRGLASRRNAEEMIRGGLVKVNGIVVTVPG-TKVHPETDRVTVDGKTVPV--- 74 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E + +YKP+G + T +DP+ + T+ D P++ I VGRLD+ + G+LL T + Sbjct: 75 -EPEPFLFLFYKPKGIVSTLHDPDEKTTLKDFFPQINP--LIHVGRLDIQSEGVLLLTNN 131 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG-VQLEDGPAAFKTIKFSGGEGIN 181 G+LA R++HP E+ R Y V+V G V L L G V+L+ P ++ N Sbjct: 132 GDLAQRILHPRYEIPRTYLVKVQGVVKPEHLDRLRSGKVRLDGRPVQPLELEQERLTETN 191 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 WY +TLTEGRNREVRRL++A+ V +L R+ +G++ L Sbjct: 192 SWYRITLTEGRNREVRRLFDALHYFVLKLTRIAFGNLDL 230 >UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium RepID=B8DUD9_BIFA0 Length = 257 Score = 128 bits (321), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/219 (40%), Positives = 122/219 (55%), Gaps = 8/219 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK+LA+AG GSRR+ E +I GRV VDG+ + +LG RV+ ++R+DG +R + Sbjct: 20 RLQKLLAQAGFGSRRKCEEMITDGRVEVDGELVTELGTRVD-PKRQQVRVDGS--RIRLN 76 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 I LA KP L T +DP+GR T+ D + + R +GRLD ++ GL+L T D Sbjct: 77 PRHI--TLALNKPRKVLSTMDDPKGRYTLRDIVGD-KYERIFHMGRLDYDSEGLILMTND 133 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSR-GVQLEDGPAAFKTIKFSGGEGIN 181 GEL+ +MHP EVE+ Y + G + R L R GVQL+DG Sbjct: 134 GELSQHVMHPKYEVEKTYIATLEGHMSGTVCRRLVRTGVQLDDGWIKLDHCSIIDSNRDQ 193 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 V L GRNR VRR++ A+G V RL+R + G I L Sbjct: 194 TIVKVVLHSGRNRIVRRIFGAIGFPVKRLVRTQIGPIKL 232 >UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA52_9PORP Length = 472 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 129/239 (53%), Gaps = 10/239 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ +G SRR + I AGRV V+G + ++LG +V P ++ +D +++ Sbjct: 207 RLNKFLSNSGLCSRRTADQYIAAGRVKVNGAVVSELGS--QVLPTDQVMVDDKPVTL--- 261 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E VL KP+ + T DPEGR TV D + R +GRLD NT G+LL T D Sbjct: 262 -EAKVYVL-LNKPKNCVTTLTDPEGRRTVMDLVHNACTERIYPIGRLDRNTTGILLLTND 319 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA RLMHP+ ++ Y V + +V ++ ++ G +LEDG I + G+ + Sbjct: 320 GDLAVRLMHPAFRKKKIYEVALDKEVTVEHMQMIAHGFELEDGEIHADAISYITGQ-THD 378 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + GRNR VRR++E +G +V L RV Y + K LPRG W L + YLR Sbjct: 379 KVGIEIHSGRNRIVRRIFEHLGYRVVHLDRVYYAGL-TKKDLPRGRWRYLTPEEVRYLR 436 >UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2G3_SALRD Length = 249 Score = 127 bits (319), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 87/246 (35%), Positives = 133/246 (54%), Gaps = 12/246 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A AG SRR+ + ++E GRV +DG ++ + G V G + +DG + E Sbjct: 12 RINKYIAHAGVCSRRDADDLVEQGRVHIDGERVDQHG--TCVREGQTVTVDGEEVYPLE- 68 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL--PKLRGARWIAVGRLDVNTCGLLLFT 120 L KP+ + T +DP+ R TV D + P+ + VGRLD NT G+LL + Sbjct: 69 ----FEYLLLNKPKDTISTTDDPKDRRTVLDAIGVPEDNPSGLFPVGRLDRNTTGVLLVS 124 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG+LA+RLMHP E+ + Y VRV V +L L RGV+L DG AA + + + Sbjct: 125 NDGDLAHRLMHPRYEIPKIYYVRVQDDVKPHQLDQLKRGVELSDGAAAADQVAYLDPQRK 184 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + L EGRNR++RR+ EA+G + +L R +Y + + L RG W L+ + L Sbjct: 185 TDI-ALELHEGRNRQIRRMMEALGHTIVQLERAKYATLTTGR-LQRGEWRRLEPEEVREL 242 Query: 241 RELVEL 246 + V+L Sbjct: 243 YQRVDL 248 >UniRef50_D2UX35 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2UX35_NAEGR Length = 362 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 137/239 (57%), Gaps = 8/239 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVR- 60 E++ K LAR G S+++ +I+AG+V V+G I + G ++ + + + G I+ + Sbjct: 83 ERVSKFLARVGVCSKQQGVDLIKAGQVKVNGILITESGQKMNPFYDV-VTVKGVNITKKD 141 Query: 61 -ESAEQICRVLAYYKPEGELCTRNDPEG-RPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 ES + ++ AY+KP G LC+R D G R T++ RL ++ I+VGRLD N+ GL+L Sbjct: 142 VESNLENVKLYAYHKPRGVLCSRVDNGGNRETIYQRLERMGFGHLISVGRLDYNSEGLIL 201 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED-GPAAFKTIKFSGG 177 T DG L+ L P +ER+Y VRV GQV L L +G +E A K G Sbjct: 202 LTNDGNLSRHLELPQTGLERQYLVRVHGQVSQPLLDSLQKGSTIEGVHYAGMKATLHREG 261 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 E + W V L EG+NRE+R++++ + + VSR++R++YG L + + +G L+L + Sbjct: 262 EKTS-WIKVILHEGKNREIRKIFQQLNLPVSRIMRIQYGPYKL-ENIQKGQIKVLELKE 318 >UniRef50_O05668 Uncharacterized RNA pseudouridine synthase ML1370 n=49 Tax=Actinomycetales RepID=Y1370_MYCLE Length = 256 Score = 127 bits (318), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 119/220 (54%), Gaps = 8/220 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRES 62 +LQK+L+RAG SRR E +I GRV VDG++ + LG RV+ P + + + V + Sbjct: 17 RLQKILSRAGIASRRAAEKLIIEGRVEVDGQLVRELGTRVD--PDVSVVRVDGVKVVVDD 74 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK-LRG-ARWIAVGRLDVNTCGLLLFT 120 + LA KP G T +D GRP V D + + +RG + VGRLD +T GL+L T Sbjct: 75 S---LVYLALNKPRGMYSTMSDDRGRPCVGDLIERRVRGNKKLFHVGRLDADTEGLILLT 131 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELA+RLMHPS EV + Y V G V + LS G++L+DGPA Sbjct: 132 NDGELAHRLMHPSHEVSKTYLATVKGAVPRGLGKKLSVGLELDDGPAHVDDFAVVDAIPG 191 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 +TL EGR R VRRL A G V L+R G + L Sbjct: 192 KTLVRLTLHEGRKRIVRRLLTAAGFPVEMLVRTDIGAVSL 231 >UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium RepID=B3DRY9_BIFLD Length = 256 Score = 126 bits (317), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 84/221 (38%), Positives = 123/221 (55%), Gaps = 8/221 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVR 60 S +LQK+LA+AG GSRR+ E +I GRV VDG+ + +LG RV+ ++R+DG + V Sbjct: 17 SIRLQKLLAQAGFGSRRKCEDMITEGRVEVDGELVTELGTRVD-PHKQQVRVDGSRVRVN 75 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + LA KP L +DP+GR T+ D + + R +GRLD ++ GL+L T Sbjct: 76 PNHV----TLALNKPRKVLSAMDDPKGRYTLRDIVGD-KYERIFHMGRLDYDSEGLILMT 130 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDL-SRGVQLEDGPAAFKTIKFSGGEG 179 DGEL+ +MHP EVE+ Y + G++ R L + GVQL+DG Sbjct: 131 NDGELSQHVMHPKYEVEKTYVATLEGKISGTVCRRLVTTGVQLDDGWIKLDHCAIIDSSR 190 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 + V L G+NR VRR++ ++G V RL+R + G I L Sbjct: 191 DHTMVKVVLHSGKNRIVRRIFGSIGFPVKRLVRTQIGPIKL 231 >UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_1464 n=4 Tax=Bacteria RepID=Y1464_AQUAE Length = 249 Score = 126 bits (316), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 95/249 (38%), Positives = 132/249 (53%), Gaps = 12/249 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKI-RIDGHLIS 58 M ++ K L+ AG SRR+ E +I GRV V+G++ + LG V+V P + I +DG + Sbjct: 2 MEVRINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLG--VKVNPEVDIVEVDGKPVK 59 Query: 59 VRESAEQICRVLAYYKPEGELCTRN-DPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLL 117 Q R + KP L P+GR T+ + L K R VGRLD NT GLL Sbjct: 60 -----PQRKRYIILNKPCCYLTQLGRSPDGRKTI-EELIKDIPERVFPVGRLDYNTEGLL 113 Query: 118 LFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGG 177 + T DGELANR++HP ++ + Y V G+VD L+ + +G++LEDG A I+ Sbjct: 114 ILTNDGELANRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIELEDGFAKPDNIRIVRY 173 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 EG N +T EGR V+R A G +V RL R+ G I L K P G W EL+ + Sbjct: 174 EGKNTLLEITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIKLGKLSP-GKWRELNQGEL 232 Query: 238 NYLRELVEL 246 L + V L Sbjct: 233 AQLFKAVGL 241 >UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vaginalis RepID=D2RB61_GARVA Length = 284 Score = 126 bits (316), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 90/224 (40%), Positives = 127/224 (56%), Gaps = 18/224 (8%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK+LA AG GSRR+ E II GRV VD + + LG RV+ K+R+DG + Sbjct: 47 RLQKLLAEAGFGSRRKCEEIILDGRVEVDDELVTTLGTRVD-PKRQKVRVDGSRVKFNTK 105 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 LA +KP+ L +DP+GR T+ D + + R +GRLD ++ GL+L T D Sbjct: 106 LV----TLALHKPKRVLSAMDDPKGRFTLRDIVGD-KYERIFHMGRLDYDSEGLILMTND 160 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDL-SRGVQLEDGPAAFKTIKFSGGEGIN 181 GEL+ +MHP EVE+ Y V G+++ R L S+GV LEDG IK I+ Sbjct: 161 GELSQHVMHPKYEVEKTYIATVEGKINGMVCRRLVSQGVNLEDG-----WIKLDRCAIID 215 Query: 182 QWYNVTLTE-----GRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 Q ++ T+ + G+NR VRR++ AVG V RL+R + G I L Sbjct: 216 QNHDTTMVKIVLHSGKNRIVRRIFGAVGFPVKRLVRTQIGPIKL 259 >UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZD4_9DELT Length = 240 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 132/242 (54%), Gaps = 24/242 (9%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLG-----DRVEVTPGLKIRIDG 54 M+E+LQK LARAG SRR+ E I GRV VDG+ +A++G +R +VT DG Sbjct: 1 MAERLQKFLARAGIASRRKAEEYIAQGRVQVDGRPVAQMGLTIDPERQQVT------FDG 54 Query: 55 HLISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTC 114 V + ++ +L KP G + T DP+GRP V L G R VGRLD++T Sbjct: 55 Q--PVLPPSRKLTVLLN--KPAGYVTTMADPQGRPIVTS-LINEPGLRLFPVGRLDLDTE 109 Query: 115 GLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLE---DGPAAFKT 171 G LL T DGELA ++HPSR++ R Y V G+ + L+ L RG+ LE PA + Sbjct: 110 GALLLTNDGELAQNILHPSRQINRTYHATVKGRPNREALQQLRRGIMLEGRRTWPARIRE 169 Query: 172 IKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTE 231 ++ + + V + EGR R+VR+++ A+ V +L RV YG + L LP G + Sbjct: 170 LRRNQE---STTLEVIIHEGRKRQVRKMFAAINHPVLQLKRVAYGGLRL-GSLPTGRYRR 225 Query: 232 LD 233 L Sbjct: 226 LS 227 >UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ05_LAWIP Length = 270 Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 124/235 (52%), Gaps = 19/235 (8%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVT-PGLKIRIDGHLISVR 60 S ++ K LA AG SRR ++ I G V+++GK VT PG+ I D +I++ Sbjct: 23 SIRINKALANAGVCSRRNVDKYILNGEVTINGK--------SVTQPGIYIHPDKDIIALH 74 Query: 61 ------ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLP-KLRGARWIAVGRLDVNT 113 + + L+ YKP + + DP+ R TV D +P + R VGRLD + Sbjct: 75 GRRVDIQLKNKKYYYLSMYKPIKVISSVKDPQNRLTVLDFIPFPWKNYRLYPVGRLDFFS 134 Query: 114 CGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG---PAAFK 170 GLLL T DGEL RL HP + + Y V + ++ + L+++S+G+ L DG P A Sbjct: 135 EGLLLITNDGELTQRLTHPRYHISKVYHVLIRERILNTTLKNISKGITLSDGTKLPPAKV 194 Query: 171 TIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLP 225 + S E W +TL +G NR++RR+ + +G+ + +LIRV+ G+I L P Sbjct: 195 RVLSSITETNTTWLEITLQQGINRQIRRMCKELGLTILKLIRVKQGNINLSNLQP 249 >UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC52_THENN Length = 240 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 129/233 (55%), Gaps = 26/233 (11%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLK------IRIDGHLI 57 +L + L+ G G+R+E+ ++I+ GRV+V+ DR + P K +++DG +I Sbjct: 2 RLDRYLSNRGIGTRKEVRALIKHGRVTVN-------DRTVLDPAYKLSDKDVVKVDGKVI 54 Query: 58 SVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLL 117 + E + +YKP G + + DP T+ + LP ++G VGRLD + GLL Sbjct: 55 DLPEKV-----YILFYKPAGYVTSTRDPHSE-TIMEFLPDIKGI--FPVGRLDKDAEGLL 106 Query: 118 LFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGG 177 L T DGE A+R++ P +VE+EY V+V G++ + KL L RGV L DG A K Sbjct: 107 LVTNDGEFAHRVISPRWKVEKEYVVKVEGEITEDKLEKLRRGVSLRDGFFA----KAKHV 162 Query: 178 EGI-NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGW 229 E I N + +TEG+ +V+R+ AVG++ L RVR G + LP+ + G + Sbjct: 163 EKISNDTVKIVITEGKYHQVKRMMAAVGLKTIHLKRVRIGGLRLPQEMKPGEY 215 >UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria RepID=Q3AVD5_SYNS9 Length = 247 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 96/236 (40%), Positives = 124/236 (52%), Gaps = 16/236 (6%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDG-HLISVRE 61 ++LQK++A AG SRR E ++AGRV+VDG++A LGD+ + L I +DG LISV+E Sbjct: 4 QRLQKLMAAAGLCSRRRGEDWLQAGRVTVDGRVASLGDQADPNSQL-IEVDGVPLISVQE 62 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 RV KP G +C+ DP+GR TV D LP + VGRLD ++ G LL T Sbjct: 63 P-----RVFLLNKPVGVICSCRDPQGRATVLDCLPHQERSGLHPVGRLDADSRGALLLTD 117 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIKFSGG 177 GEL RL HP + Y V V G LR G+ L DG PA ++ G Sbjct: 118 QGELTLRLTHPRYNHAKTYRVLVRGIPSSQALRRWRDGLLL-DGRLTRPARVHCLRSRGA 176 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELD 233 + V L EGRNR++RR+ E +G V L RV I L L G W LD Sbjct: 177 SSL---LEVELKEGRNRQIRRVAELLGHPVIDLQRVAIDGIRL-DDLAEGCWRRLD 228 >UniRef50_D0NXA7 RNA pseudouridine synthase, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0NXA7_PHYIN Length = 238 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/225 (39%), Positives = 125/225 (55%), Gaps = 12/225 (5%) Query: 12 AGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRESAEQICRVL 70 +G SRRE E I++ V+V+G + A + +V+ + + +DG ++S Q +V Sbjct: 2 SGLCSRREAEKRIQSFDVTVNGHVVADVATKVDAEKDV-VAVDGRVLS----KTQKTKVW 56 Query: 71 AYYKPEGELCTRNDPEGRPTVFDRLPKL-RGARWIAVGRLDVNTCGLLLFTTDGELANRL 129 YK +GEL T +DP+ R T+FDRL + + VGRLD NT GLLLFT DG+ A L Sbjct: 57 MAYKMKGELVTNSDPQDRATIFDRLRVMGLTQHMMPVGRLDFNTEGLLLFTNDGDYAREL 116 Query: 130 MHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFS--GGEGINQWYNVT 187 HP V R Y V G V ++KL +L RG L DG ++ IK + + + W V Sbjct: 117 EHPKTGVSRVYRALVRGNVAESKLEELKRG-PLVDG-VKYRPIKVTVQSTDKKDSWLQVK 174 Query: 188 LTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 + EG+NREVR+ V + V +LIRV+YG L LP G E+ Sbjct: 175 VAEGKNREVRKALAHVRLVVKQLIRVQYGPYRLA-DLPSGAVLEV 218 >UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium RepID=C6JI84_FUSVA Length = 236 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 131/247 (53%), Gaps = 22/247 (8%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR-ES 62 ++ K LA G SRRE++ +IE G + ++G+ A TPG+K+ D I +R + Sbjct: 5 RINKYLASLGIASRREVDKMIEEGSIKINGEKA--------TPGIKVS-DKDEIYIRGKK 55 Query: 63 AEQICRVLAYY---KPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 E+ YY KP L + D GR TV D + R +GRLD NT GL++ Sbjct: 56 IEKHTEKKVYYILNKPLEVLSSSKDDRGRKTVVDLINC--KERIFPIGRLDYNTSGLIIL 113 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG---PAAFKTIKFSG 176 T DGEL NR++HP E+ +EY V+V G++ + + L GV+L+DG PA + ++ Sbjct: 114 TNDGELFNRIIHPKAEIFKEYYVKVLGEIKENNVELLKNGVELDDGITLPANVRILRREK 173 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 G+ V + EGRNR+VRR+ + + V L R + G++ L L G + EL + Sbjct: 174 GK---TELLVAIREGRNRQVRRMMDKINHPVITLRREKIGNLSLG-NLKLGEYRELTNDE 229 Query: 237 TNYLREL 243 NYL L Sbjct: 230 INYLYSL 236 >UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZI67_9SPHI Length = 391 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 123/230 (53%), Gaps = 11/230 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + ++ +G SRRE + +IE G +SV+GK I ++G +V+P ++ L+ Sbjct: 160 RLNRFISNSGVCSRREADKLIEMGMISVNGKVITEMG--FQVSPTDTVKYGKRLLK---- 213 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E+ VL KP+ + T NDP+ R TV D + R VGRLD NT GLLLFT D Sbjct: 214 REKFVYVL-LNKPKDFITTTNDPQDRKTVMDLIKNSCDERIYPVGRLDRNTTGLLLFTND 272 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GE+A +L HPS +V++ Y V + + D L ++ GV LEDG AA I E Sbjct: 273 GEVAKKLSHPSHDVKKVYQVELDKPLKDEDLDSIAEGVILEDGYAAVDEIAILNPERT-- 330 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 V + GRNR VRR++ + +V +L R Y + K + RG W L Sbjct: 331 LVGVEIHIGRNRIVRRIFNHLDYEVVKLDRTMYAGLN-KKNIDRGDWRYL 379 >UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales RepID=B1XJP9_SYNP2 Length = 259 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 129/244 (52%), Gaps = 6/244 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M+E++QK+LAR G SRR E +I AGRV+++GK +LGD+ + G ++ +DG + Sbjct: 1 MAERVQKILARWGIASRRGAEKLILAGRVTLNGKPVQLGDQADPE-GDRLCVDGKPLKAT 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL-PKLRGARWI-AVGRLDVNTCGLLL 118 E ++ +KP+G + T DP+GR TV D L P LR + I +GRLD + G LL Sbjct: 60 ERPRHYYYLI--HKPKGVVSTCADPKGRSTVLDLLPPPLRQGKGIHPIGRLDAQSTGALL 117 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG L HP + + Y V + G+V + L +GV L D I Sbjct: 118 LTNDGNFTLALTHPRYHIPKTYRVWLKGKVPEHVLDQWRQGVMLGDRRTLPTQIHLKTIT 177 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 ++ LTEGRNR++RR+ E +G V +L R+ G++ L L RG L A+ Sbjct: 178 QDKTCIDIMLTEGRNRQIRRVAEQLGFPVVKLHRLAIGNLHL-GDLQRGQARPLTKAEIK 236 Query: 239 YLRE 242 LR Sbjct: 237 QLRS 240 >UniRef50_B5YMC9 Predicted protein n=1 Tax=Thalassiosira pseudonana CCMP1335 RepID=B5YMC9_THAPS Length = 365 Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 128/225 (56%), Gaps = 23/225 (10%) Query: 16 SRREIESIIEAGRVSVDGKIAKLGDRVEVTPG-----LKIRIDGHLISVRESAEQICRVL 70 SRR+ E ++ GRV++ GK+ E + + I++DG LI AE+ RV Sbjct: 92 SRRQSERMVLLGRVTLFGKVVD-SPSFEFSASTDEGEIAIKVDGRLIY---GAEKTTRVW 147 Query: 71 AYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIA-----VGRLDVNTCGLLLFTTDGEL 125 K +GEL T +DP+GRP++ RL K G + + VGRLD+ T GL++F+ DG+ Sbjct: 148 LANKLKGELITEDDPDGRPSMLQRL-KANGTKHLPTHLKPVGRLDMMTEGLMIFSNDGQY 206 Query: 126 ANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE---GINQ 182 A L PS + R Y VRV G++ KL + +GV + A+ + ++ +G + N Sbjct: 207 ARNLELPSNHLWRTYRVRVHGRLTLGKLTAMRKGVTVRG--ASGEVVQSTGKDVNGSTNT 264 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL---PKGL 224 W +T TEG+NR++RR+ ++G+ V+RLIR+ YGD L P GL Sbjct: 265 WLQITCTEGKNRQLRRILGSMGLDVTRLIRISYGDYDLNSIPPGL 309 >UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSZ6_9SPIO Length = 252 Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/218 (37%), Positives = 117/218 (53%), Gaps = 11/218 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +LQ LA AG SRR E IIE GRVSV+G + G +V G + DG V A Sbjct: 16 RLQVYLAHAGVASRRACEKIIEEGRVSVNGTVVT-GMGSKVCAGDTVLFDGK--PVHPEA 72 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + C VL KP G +CT +D +GRPT D L + R +GRLD+ + G +LFT DG Sbjct: 73 RK-CYVL-LNKPAGFVCTLSDEKGRPTAADLLKEAYSERLYNIGRLDMFSSGAILFTNDG 130 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN-Q 182 + A ++ HPS ++E+EY + L RG+++ DG K +N + Sbjct: 131 DFAAKIEHPSAQIEKEYVIETTQDFPPELLTRFERGIRV-DGI----FYKCRSAAAVNRR 185 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 + L EG+NRE+RR+ ++ + RL+RVR G++ L Sbjct: 186 KLRIVLVEGKNREIRRVLDSFNCTIKRLVRVRIGNLEL 223 >UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae RepID=Q2K4S3_RHIEC Length = 312 Score = 123 bits (309), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 86/240 (35%), Positives = 129/240 (53%), Gaps = 12/240 (5%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRESA 63 L + L++ G+ SR + E +I RV+VDG+ ++ V+++ +I +DG +I+ Sbjct: 72 LPRALSKLGYCSRTQAERLIAESRVAVDGRTVSDASAWVDLSTA-RISVDGLVIAAEAKI 130 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 L KP G + TR DPEGRPTV+D L VGRLD + GLLLFT D Sbjct: 131 -----YLMLNKPRGLVTTRQDPEGRPTVYDCLKNFDIPHLSPVGRLDKASEGLLLFTNDT 185 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGP--AAFKTIKFSGGEGIN 181 E A L+ P V + Y V++ +DD ++ ++ G++ DG A T + G+ N Sbjct: 186 EFAQTLLDPLTHVTKTYHVQIDRLMDDEEIAAMTSGIR-HDGELLTAAATRRLRQGDR-N 243 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W V L EGRNR++RR+ EA+G + RL+RV G + L + LP+G L + LR Sbjct: 244 SWIEVELDEGRNRQIRRMLEALGAECLRLVRVAIGGLELGE-LPKGAVRALTEGELQGLR 302 >UniRef50_B5ELL5 Pseudouridine synthase n=3 Tax=Acidithiobacillus RepID=B5ELL5_ACIF5 Length = 268 Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 93/240 (38%), Positives = 126/240 (52%), Gaps = 12/240 (5%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRESA 63 L ++L++AG SR I AGRV VDG+ I R ++ G IRIDG + + S Sbjct: 26 LARILSKAGLCSRTVAVEWIRAGRVEVDGRRILDPEARFPLS-GPGIRIDG--LDITAST 82 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIA-VGRLDVNTCGLLLFTTD 122 Q VL +KP G L TR D GR TV+D LP G+ W+A VGRLD + GLLLF+ D Sbjct: 83 RQ---VLLLHKPRGVLTTRQDERGRATVYDLLP---GSPWLAPVGRLDQASSGLLLFSND 136 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 A RL+ P + V + Y V++ + + L+ L+ P I+ G Q Sbjct: 137 PHWAQRLLDPDQHVAKTYHVQIRPPLSTDTVVQLAADSVLDGEPCLPMQIRELRCGGKTQ 196 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W L EGRNR++RRL A +V RLIRV G++PL + L G W L + LR+ Sbjct: 197 WLEFILQEGRNRQIRRLLAACDREVLRLIRVAVGNLPLGE-LRAGEWRWLHSGEEELLRQ 255 >UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1Q0_9BACT Length = 260 Score = 123 bits (308), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 89/252 (35%), Positives = 129/252 (51%), Gaps = 15/252 (5%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISV 59 M E+LQKVLA AG GSRRE E++I AGRV+VDG ++ LG V+ + I DG + + Sbjct: 1 MQERLQKVLASAGIGSRRECENVILAGRVTVDGERVTALGATVDAGKSV-IYCDG--MPI 57 Query: 60 RESAEQICRVLAYY---KPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGL 116 R A+ YY KP+ LCT D R D + ++ R +GRLD + GL Sbjct: 58 RPEAK------IYYLLNKPKDCLCTNYDELNRLRAIDIIKNVK-QRLYTIGRLDKQSEGL 110 Query: 117 LLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSG 176 ++ T DGEL+N+L HP EV + Y + + G + + + L GV L G IK Sbjct: 111 IIITNDGELSNKLSHPKYEVNKTYFIEIDGYLSNETITALQSGVWLAFGKTQPVRIKKMH 170 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 + + L EG+NRE+RR+ G +V L R++ G + P L G + +L + Sbjct: 171 RSFKKSRFEMILCEGKNREIRRMLADHGHKVRTLRRIKIGSLCDP-DLKVGKYRKLTEQE 229 Query: 237 TNYLRELVELPP 248 L + E P Sbjct: 230 IKSLYSMTEKKP 241 >UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZX4_ACIFD Length = 254 Score = 123 bits (308), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 91/229 (39%), Positives = 126/229 (55%), Gaps = 16/229 (6%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGL-KIRIDGHLISVR 60 S K+ +LARAG GSRR +E I GRV ++G++A +G RV PG+ ++ DG I+ Sbjct: 5 SVKVHVLLARAGCGSRRVLEDAIRDGRVRINGEVATIGARVR--PGVDRVEFDGLEIATE 62 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E E KP G + + DPEGRPTV + +R VGRLDV++ GLL+ T Sbjct: 63 EQREYWL----LNKPRGVVSSVVDPEGRPTVRSLVATT--SRVYPVGRLDVDSEGLLILT 116 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG L +L HP V +EY V V V R+L GV+++ ++ G Sbjct: 117 NDGPLTYQLTHPRFHVPKEYLVWVDRPVPRRLGRELREGVEVDGELLRASSVGTVG---- 172 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYG---DIPLPKGLPR 226 + + LTEGRNR++RR+ AVG+ V RL+RVR G D LP G+ R Sbjct: 173 PRLVRIVLTEGRNRQIRRMVGAVGLSVERLVRVRIGPLVDPHLPPGVAR 221 >UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7I2_9ACTN Length = 285 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/250 (33%), Positives = 125/250 (50%), Gaps = 27/250 (10%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGL-KIRIDGHLIS 58 + +LQ+ LARAG SRR E +I AGRV V+GK + LG +V P + +DG Sbjct: 23 FTMRLQRFLARAGVASRRGSEKLISAGRVCVNGKQVRVLGTKV--MPQYDHVTVDGKEYV 80 Query: 59 VRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 + L KP L T +DP G P V +P VGRLD +T G+LL Sbjct: 81 LGNDH----VYLLLNKPSQVLTTMSDPFGFPCVASLVPCDDYPGLFPVGRLDSDTTGVLL 136 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG---PAAFKTIK-- 173 FTT+G + NRL+HPS V + Y + G++ ++++ LS+G+ LEDG P +TI Sbjct: 137 FTTNGNMGNRLLHPSHHVWKTYVALIEGKLTSSQMQKLSQGIMLEDGMTSPCFIRTITQD 196 Query: 174 ------------FSGG--EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIP 219 F + + + EGRN +V+R+ + +G V +L R ++G + Sbjct: 197 EPCTHLDKNHSLFDDMRLNAASSLCELKIHEGRNHQVKRMLQEIGHPVIKLHRFQFGPLC 256 Query: 220 LPKGLPRGGW 229 L +P G W Sbjct: 257 LNAQIPLGSW 266 >UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae RepID=A4BW35_9FLAO Length = 305 Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 135/244 (55%), Gaps = 16/244 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A +G SRRE ++ IE G V V+G + ++G +V+ P +R DG I+ Sbjct: 73 RLNKYIANSGVCSRREADTYIEHGSVEVNGNLVTEMGYKVQ--PDDVVRFDGTGIT---- 126 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 EQ +L KP+ + T +D GR TV D + R VGRLD NT GLLLFT D Sbjct: 127 PEQKKYIL-LNKPKNYITTMDDDRGRKTVMDLISNATKERIYPVGRLDRNTTGLLLFTND 185 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLS--RGVQLEDGPAAF-KTIKFSGGEG 179 GELA +L HP +V + Y + +++ L+DL RG L +G F + + G+ Sbjct: 186 GELAKKLTHPKHDVRKLYHASLDKKLE---LKDLEKLRGEVLIEGKKVFIDAVSYVDGQP 242 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 ++ + + GRNR VR+++E +G +VS+L RV + ++ + LPRG W EL + + Sbjct: 243 KSE-VGIEIHSGRNRIVRKIFEHLGYKVSKLDRVIFAEL-TKRNLPRGRWRELTNQELSN 300 Query: 240 LREL 243 L+ L Sbjct: 301 LQML 304 >UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1DTU8_SULAA Length = 247 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/221 (36%), Positives = 125/221 (56%), Gaps = 8/221 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRE 61 E+L K +A++G SRR+ + +I G+V V+GK K LG +++ + + ++G + V+ Sbjct: 2 ERLNKYIAKSGICSRRKADELILEGKVKVNGKTVKNLGLKIDPKKDV-VEVEGKI--VKP 58 Query: 62 SAEQICRVLAYYKPEGEL-CTRNDPEGRPTVFDRLPKLR-GARWIAVGRLDVNTCGLLLF 119 + ++I LA YKP G L D GR T+ D L +L+ + VGRLD N+ GLL+ Sbjct: 59 TEKKIY--LAIYKPVGYLSAVGKDRFGRKTLTDFLNELKIPYKLFPVGRLDYNSEGLLIL 116 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DGE AN++ HP E+++ Y V+V G+V L+ + G LEDG IK E Sbjct: 117 TNDGEFANKVAHPRNEIKKVYKVKVAGEVSQETLKKMEEGTILEDGFFKPDKIKMLKREE 176 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 W V + G+ R +RR ++ G +V RLIRV+ G I + Sbjct: 177 DGTWLLVEIHSGKKRIIRRFMDSFGHRVKRLIRVKIGSIDI 217 >UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y027_PEDHD Length = 472 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/243 (33%), Positives = 137/243 (56%), Gaps = 9/243 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + ++ +G SRR+ + +IEAG VSV+G++ ++LG +++ ++R +G L+ Sbjct: 238 RLNRYISNSGICSRRKADELIEAGVVSVNGEVVSELGHKIDPVKD-QVRYNGELLK---- 292 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E+ VL KP+ + T +DP+ R TV + K R VGRLD NT GLLL T D Sbjct: 293 REKKIYVL-LNKPKDYITTTDDPQERRTVMQLVEKASRERIYPVGRLDRNTTGLLLMTND 351 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA++L HP + + Y V + + L + G++LEDG ++ + G G + Sbjct: 352 GDLADKLSHPKNGITKIYHVELSRSLSQGDLNKIQFGLELEDGIIKPDSVSYVTG-GSKR 410 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + G+NR VRR++E +G V +L RV YG++ K LPRG W L+ + ++ Sbjct: 411 EVGIQIHSGKNRIVRRIFEHLGYDVVKLDRVVYGNL-TKKDLPRGRWRYLEEHELIQIKH 469 Query: 243 LVE 245 L++ Sbjct: 470 LIK 472 >UniRef50_C6AV89 Pseudouridine synthase n=17 Tax=Rhizobiaceae RepID=C6AV89_RHILS Length = 268 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 85/238 (35%), Positives = 120/238 (50%), Gaps = 8/238 (3%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAE 64 L + L++ G+ SR + E +I RV+VDG+ I IDG +I+ Sbjct: 27 LPRALSKLGYCSRTQAERLIAENRVAVDGRTVSDASAWVDLATASISIDGLVIAAEAKI- 85 Query: 65 QICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGE 124 L KP G + TR+DPEGRPTV+D L VGRLD + GLLLFT D E Sbjct: 86 ----YLMLNKPRGLVTTRHDPEGRPTVYDCLRDFDIPHLSPVGRLDKASEGLLLFTNDTE 141 Query: 125 LANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI-NQW 183 A L+ P V + Y V++ +DD + ++ G++ DG T +G N W Sbjct: 142 FAQILLDPVTHVTKTYHVQIDRIMDDEDIAAMTAGIR-HDGELLTATAARRLRQGDRNSW 200 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 V L EGRNR++RR+ EA+G + RL+RV G + L + LP+G L + LR Sbjct: 201 IEVELDEGRNRQIRRMLEALGTECLRLVRVAIGGLELGE-LPKGAVRALTEPELQALR 257 >UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroidetes RepID=D2QMI8_9SPHI Length = 638 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 84/241 (34%), Positives = 127/241 (52%), Gaps = 11/241 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + +A +G SRRE + +I G +SV+GKI ++G +V G ++ +++ Sbjct: 406 RLNRFIANSGVCSRREADELIAHGDISVNGKIVTEMG--YKVKEGDTVKYGTKVLN---- 459 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E+ VL KP+ + T DPE R TV + + R VGRLD NT GLLL T D Sbjct: 460 PERFVYVL-LNKPKDYITTTEDPEERKTVMELVADAGKFRMYPVGRLDRNTTGLLLITND 518 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA++L HPS + + Y V + + D + +G++LEDGP I + Sbjct: 519 GELADKLTHPSNNIRKIYQVELDKPITDEHFEAIKKGIELEDGPIKPDAISIVTPDAY-- 576 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + GRNR VRR++E+ G +V++L R Y + K LPRG W LD + L+ Sbjct: 577 VVGIEIHSGRNRIVRRIFESFGYEVTKLDRTTYAGL-TKKELPRGKWRFLDPKEVVKLKY 635 Query: 243 L 243 L Sbjct: 636 L 636 >UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLU4_9FIRM Length = 230 Score = 121 bits (304), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/246 (33%), Positives = 130/246 (52%), Gaps = 23/246 (9%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ K +A +G+ SRR + ++E G+V V+GK+A G ++++ ++ ++G I + E+ Sbjct: 2 RINKFIANSGYCSRRNADLLLEQGKVFVNGKLATKG--IDISENDEVLVEGKKIKLEEAK 59 Query: 64 EQICRVLAYY---KPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + YY KP G T V D + R VGRLD ++ GLLL T Sbjct: 60 K-------YYLLNKPIGYSSTAKAQFQEKIVLDLIDS--KERIYPVGRLDKDSFGLLLLT 110 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG---PAAFKTIKFSGG 177 DG+LA RL HPS VE+EY V+V + ++ L+ LS G+ LE A F+ + F Sbjct: 111 NDGDLAFRLTHPSHNVEKEYIVKVDKTLKESDLKKLSSGIMLEGKITRKARFEMLDFK-- 168 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 + V L EGRNR++R++++ + V L R+ +G I L K L G + EL + Sbjct: 169 ---SNIVKVFLKEGRNRQIRKMFKTLDYNVISLERIAFGKIKLGK-LKVGNYRELSKEEI 224 Query: 238 NYLREL 243 YLR L Sbjct: 225 EYLRSL 230 >UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RK43_PORG3 Length = 439 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 130/239 (54%), Gaps = 10/239 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ AG SRRE + +IE G ++V+G++ +LG R+ R D + + Sbjct: 205 RLNKFLSNAGVCSRREADLLIEKGEITVNGEVVTELGRRI-------TRQDEVIYKDKRV 257 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + + KP+ + T +DPE R TV D + R VGRLD NT G+LL T D Sbjct: 258 EIESKVYVLLNKPKNCVTTSDDPECRTTVMDIVRYACPERIYPVGRLDRNTTGVLLITND 317 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA++L HPS + ++ Y V + V ++ ++ GV+L+DG I + + ++Q Sbjct: 318 GDLASKLTHPSFKKKKIYHVWLNKDVSIEDMQKIADGVELDDGEIHADAISYVKEDDLSQ 377 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + GRNR VRRL+E +G +V +L RV + + K LPRG W L+ + N LR Sbjct: 378 -VGIEIHSGRNRIVRRLFEHLGYRVVKLDRVYFAGL-TKKNLPRGKWRYLNEQEVNNLR 434 >UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (class) RepID=B0RHF4_CLAMS Length = 291 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 84/220 (38%), Positives = 117/220 (53%), Gaps = 11/220 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +LQKV+A AG SRR E +I AGRV+V+G+ PG +I D ++V + A Sbjct: 26 RLQKVMAAAGVASRRVCEDMIAAGRVTVNGETV-------TEPGRRIDPDVDEVAVDDQA 78 Query: 64 EQIC---RVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 Q+ R L KP G + D GRP + + + R VGRLD T GLL+ T Sbjct: 79 VQLDTSKRYLMLNKPVGIYSSLRDERGRPDLREFT-EEFEERLFNVGRLDAETSGLLILT 137 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG+LA+ L HPS V + Y +V G+V ++ L++GV LEDGP + G G Sbjct: 138 NDGDLAHVLAHPSFGVLKTYIAKVTGRVTPQTIQRLTQGVDLEDGPIQADRARILSGGGD 197 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 +TL GRNR VRR+ + VG V L+R ++G + L Sbjct: 198 QTLVEITLHSGRNRIVRRMLDEVGHPVEELVRRQFGPLHL 237 >UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID=C1XV14_9DEIN Length = 369 Score = 121 bits (303), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 96/280 (34%), Positives = 143/280 (51%), Gaps = 15/280 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +LQ+ LARAG SRR+ E +I GRV+++ +IA +G V+ + +DG + + E Sbjct: 2 RLQQFLARAGVASRRKAEDLIREGRVTINDQIAGIGS--SVSESDVVCLDGERVRLPEKK 59 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 V+A +KP G T++DP TV+ +P + G VGRLD ++ GLLL T DG Sbjct: 60 V----VIALHKPVGVTTTKSDPHAERTVYQLVPDVPGLH--PVGRLDKDSEGLLLLTNDG 113 Query: 124 ELANRLMHPSREVEREY-AVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 +L +L HP V + Y A G+V +A R L GV L+DG A + E + Sbjct: 114 DLTLKLTHPRYGVRKVYRAWCKHGRVSEADCRRLVEGVALDDGLA-----QALEAEPTQE 168 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + EG+ REVRR+ +G V+RL+R++ G I L K P G W L + L+ Sbjct: 169 GARIVMAEGKKREVRRMLGRLGYPVTRLVRLQVGPIKLGKLNP-GEWRYLTPEEIGLLQG 227 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGR 282 L P A K + + + RA+K S+ GR Sbjct: 228 QKPLKPRKKEGWAKAKPAKFAQQREESRAIKPPSRTEQGR 267 >UniRef50_O66829 Uncharacterized RNA pseudouridine synthase aq_554 n=1 Tax=Aquifex aeolicus RepID=Y554_AQUAE Length = 238 Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 87/249 (34%), Positives = 129/249 (51%), Gaps = 14/249 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K L+++ H SR+E + +I GRV V GK+ K + E ++ SV+ Sbjct: 2 RLDKYLSKSLHISRKEAKELIREGRVKVSGKVVK---QAEYRVKEGEEVEVEGKSVKPKK 58 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRL-PKLRGARWIAVGRLDVNTCGLLLFTTD 122 L YKP+G L T + + P+ + + + + GRLDV+ GLLL T D Sbjct: 59 NVY---LMLYKPKGYLSTTEEDKKYPSFLELIREHFPSRKLFSAGRLDVDAEGLLLITDD 115 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAF-KTIKFSGGEGIN 181 GELA+RL HP +VE+EY VR+ + D +L+ L V+LE+ P K K SG Sbjct: 116 GELAHRLTHPKWKVEKEYIVRLDRDIGDEELKKLYE-VKLEEKPVQLVKAEKLSGDT--- 171 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 LTEGR+ V+RL++AVG V L R R G++ L + + G W EL + L+ Sbjct: 172 --VKAILTEGRHHVVKRLFKAVGHNVVYLKRTRVGNLRLDENMEPGEWRELTEEEVKELK 229 Query: 242 ELVELPPET 250 LV+ P+ Sbjct: 230 RLVKYNPQN 238 >UniRef50_Q73PC4 Pseudouridine synthase n=1 Tax=Treponema denticola RepID=Q73PC4_TREDE Length = 234 Score = 120 bits (300), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 84/226 (37%), Positives = 126/226 (55%), Gaps = 14/226 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQ LAR G SRR E++I GRVSVDGKI +LG ++V+ KI +DG + Sbjct: 6 RLQVYLARCGVASRRASENLILNGRVSVDGKIITELG--IKVSGKEKICLDGK--QIFPE 61 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 AE+ R + KPEG +C+ D + RP L R +GRLD+ + G +LFT D Sbjct: 62 AEK--RYILLNKPEGYVCSLADEKDRPIAASLLKDTYTERLYNIGRLDMLSGGAILFTND 119 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+ + ++ HPS E+E+EY V + D L+ RGV++E +K + E I++ Sbjct: 120 GDFSAKVEHPSSEIEKEYEVITVFEYPDEILQKFLRGVRIEG--VFYKAL---SAERISK 174 Query: 183 -WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRG 227 + L EG+NRE+RR+ + +++ +L RVR G + L LP G Sbjct: 175 NKMRIVLIEGKNREIRRVLKFFNIKIKKLTRVRIGCVYLA-DLPSG 219 >UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX41_SYNWW Length = 239 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 128/238 (53%), Gaps = 10/238 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K LA +G SRR+ E +I G+V V+ K I +L + PG ++ G +I E Sbjct: 2 RLAKYLAESGISSRRQAERLITQGKVKVNDKTITELA--FTLKPGDRVEFAGKII---EQ 56 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 ++I +L +KP G + + DP+GRP V D L + R VGRLD +T GLLL + D Sbjct: 57 TDKIYLLL--HKPAGYISSLADPQGRPRVIDLLSAV-NTRVFPVGRLDYDTEGLLLLSND 113 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GE +N + HP + ++Y V G V +R L +GV LEDG A ++ + Sbjct: 114 GEFSNLMTHPRYLIPKKYEAWVQGLVKPDTIRQLEQGVALEDGITAPARVRLLSSKKGQS 173 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + EG+ R+++R+ AVG +V++L R + L +G+PRG + L ++ L Sbjct: 174 LLELEIHEGKKRQIKRMCLAVGHRVTKLKRTALAFLTL-EGVPRGQFRFLTASEVESL 230 >UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1Y0J0_9BACT Length = 555 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 134/239 (56%), Gaps = 10/239 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K LA AG SRRE + I AG+V+V+G+ I +LG ++ T +++ L+S+ Sbjct: 321 RLNKFLANAGVCSRREADDFILAGQVTVNGEVINELGTKILRTD--EVKFQDKLVSL--- 375 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E+ VL KP+ + T +DP+ R TV D + R VGRLD NT G+LLFT D Sbjct: 376 -EKKVYVLLN-KPKDYVTTSDDPQQRKTVMDLVKDACPERIYPVGRLDRNTTGVLLFTND 433 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA++L HP ++ Y V + + +L+ +S G++LEDG I+++ E Q Sbjct: 434 GDLASKLTHPKFLKKKVYHVFLDKPITANELQKISDGIELEDGEIKADAIEYANPEDQAQ 493 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + G+NR VRR++E++G +V +L RV + + K + RG W L + LR Sbjct: 494 V-GIEIHSGKNRIVRRIFESLGYRVVKLDRVMFAGL-TKKNVRRGDWRFLTEKEVEMLR 550 >UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6G735_9DELT Length = 300 Score = 119 bits (299), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 137/252 (54%), Gaps = 14/252 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRES 62 +LQK +A AG SRR+ E +I AG V V+G++ + LG RV ++ + G I ++ Sbjct: 32 RLQKFMASAGVASRRKAEELITAGVVRVNGQVVRELGTRV-FPERDRVTVRGEPI---QA 87 Query: 63 AEQICRVLAYYKPEGELCTRN---DPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 ++ VL KP+G + + D GRPTV L + R VGRLD ++ G+LL Sbjct: 88 ESKVYYVL--NKPDGVVSSAAGSVDERGRPTVISLLHGV-SERLYPVGRLDFHSRGVLLL 144 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIK-FSGGE 178 T DG LA L HP V + Y V+ G++ + + + L GV+L+DG + F+ E Sbjct: 145 TNDGGLAEALTHPRHGVVKTYHVKFQGKLTEEQEQLLRDGVELDDGAITRPVAELFAFRE 204 Query: 179 -GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 N WY + + EG NR++RR+ EA+G V +LIRV GDI G+P G + L+ + Sbjct: 205 TATNVWYQIGIREGLNRQIRRMGEAIGHPVLKLIRVAIGDI-TADGVPEGEFRALNATEV 263 Query: 238 NYLRELVELPPE 249 L V+L PE Sbjct: 264 GQLLANVKLAPE 275 >UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin514 RepID=B9XS61_9BACT Length = 235 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 124/241 (51%), Gaps = 15/241 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK LA AG SRR E II GRVSV+G + +LG +V+ I +DG + ++ Sbjct: 3 RLQKFLAEAGVASRRASERIILGGRVSVNGDTVRELGTKVDPIHD-SIALDGAPLRLKRK 61 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARW---IAVGRLDVNTCGLLLF 119 +A KP G +C+R D R + D LP A W +VGRLD ++ GL+ Sbjct: 62 L-----YVALNKPRGYVCSRKDDRKRKVIGDLLP----AEWDNLYSVGRLDSDSEGLIFL 112 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DGE + L HP V ++Y V G+V+ L+ G+ E + + Sbjct: 113 TNDGEFSLHLTHPRYRVLKKYLATVEGRVEQEMLQRFKHGIVHEGEKLKVDRARTLSVQN 172 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + LTEG+NRE+RRL+E+ G+ VSRL+R++ G I L + L G W L A+ Sbjct: 173 STSLVELELTEGKNREIRRLFESQGLTVSRLVRMQIGKIKLGE-LRSGKWRMLTEAEIKS 231 Query: 240 L 240 L Sbjct: 232 L 232 >UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7PFL3_CHIPD Length = 389 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 134/242 (55%), Gaps = 16/242 (6%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAE 64 L K ++ G+ SRRE +++I +GRV ++ + A LG+R + PG + +DG LI+ + + Sbjct: 7 LNKFISDTGYCSRREADNLITSGRVLLNDRPAALGNRYK--PGDTVEVDGSLITAAKKEK 64 Query: 65 QICRVLAYYKPEGELCTRNDPEGRPTV--FDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 ++ LA KP G + T + + + F P+ R +GRLD ++ GL+ T D Sbjct: 65 RV--YLALNKPPG-ITTTTELHIKDNIISFVNYPQ----RIFPIGRLDKDSEGLIFLTND 117 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G++ N+++ + E+EY VRV +D L +S+GV + D ++ +G Q Sbjct: 118 GDIINKILRAANNHEKEYVVRVNKPIDTNFLHQMSQGVPILDTRTLPCKVQMTG----RQ 173 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + +TLT+G NR++RR+ E +G V L RVR ++ L K LP G W L A+ +++E Sbjct: 174 TFRITLTQGLNRQIRRMCEYLGYTVVGLQRVRIMNVRLDK-LPLGKWRYLSEAEIAFIKE 232 Query: 243 LV 244 V Sbjct: 233 SV 234 >UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3JBA6_9PORP Length = 459 Score = 119 bits (297), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/239 (36%), Positives = 125/239 (52%), Gaps = 10/239 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K LA +G SRR + +I G VSV+G+I +LG V T I +DG +S+ Sbjct: 225 RLNKFLASSGVCSRRVADQLIVDGHVSVNGEIVTQLGKHV--TREDFISVDGKPVSI--- 279 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E+ VL KP + T +DPE R T D + R VGRLD NT GLLL T D Sbjct: 280 -EKKIYVL-LNKPRNCVTTSSDPEKRLTAIDLVRNACNERIYPVGRLDRNTTGLLLLTND 337 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA +LMHP E ++ Y V + V ++ ++ G++LEDG I + + Sbjct: 338 GDLAAKLMHPKYEKKKIYQVTLDKPVSVEHMQQIASGIELEDGEIHADAISYVDENNL-A 396 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + GRNR VRR+++ +G +V +L RV + + K LPRG W L + LR Sbjct: 397 IVGIEIHSGRNRIVRRIFKHLGYRVYKLDRVYFAGL-TKKDLPRGRWRYLTEDEVRNLR 454 >UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LG30_SYNFM Length = 250 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 102/249 (40%), Positives = 133/249 (53%), Gaps = 12/249 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGL-KIRIDGHLISVRE 61 +LQKVLA+AG SRR E +I GRV V+G + +LG V+V P +I +D I++ E Sbjct: 5 RLQKVLAQAGIASRRGAEEVIRQGRVVVNGIVVTELG--VKVDPHADRITVDRVTIAMVE 62 Query: 62 SAEQICRV-LAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 S RV L +KP + T DP+GR TVFD +P GAR VGRLD + GLLL T Sbjct: 63 S-----RVYLLLFKPRCCVTTARDPQGRKTVFDFVPDA-GARLFPVGRLDFDAEGLLLLT 116 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG LANRL HP V + Y V G A L L GV LE+G A + G Sbjct: 117 NDGLLANRLQHPRYGVTKTYEVAAMGHPTPAALDRLRTGVMLEEGMTAPAEVTVIGSSPR 176 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + L +G NR+++R+ EAVG V + RV +G + L L GG L + L Sbjct: 177 STRLRIVLHQGWNRQIKRMGEAVGHPVLSIKRVAFGPLKL-GSLKPGGSRHLKSGEVELL 235 Query: 241 RELVELPPE 249 +LV L E Sbjct: 236 YKLVHLDKE 244 >UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria RepID=Q3MC44_ANAVT Length = 288 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 85/224 (37%), Positives = 119/224 (53%), Gaps = 9/224 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M +LQKVLA+ G SRRE E +I RV ++G +A+LG +V + I +DG +S + Sbjct: 27 MEARLQKVLAQWGIASRREAEEMIRRSRVQINGTLAELGQKVNPERDI-ITVDGKSVSAQ 85 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLL 118 L KP G + T DP+GR TV D LP+ +G+ VGRLD + G L+ Sbjct: 86 RHHR--LTYLLLNKPTGVVSTCYDPQGRKTVLDLLPEELRKGSGLHPVGRLDAYSTGALI 143 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG+L +L HPS + + Y + V G +A L+ GV L DG K K S E Sbjct: 144 LTNDGDLTFKLTHPSHNIPKTYQILVKGHPPEAVLKMWREGVLL-DGRKTRKA-KVSLLE 201 Query: 179 GINQW--YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 + + + L EGRNR++RR+ E +G V +L R G I L Sbjct: 202 SLAEKSRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAIGSIQL 245 >UniRef50_A9AXM1 Pseudouridine synthase n=3 Tax=Bacteria RepID=A9AXM1_HERA2 Length = 728 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 98/240 (40%), Positives = 138/240 (57%), Gaps = 9/240 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRE 61 E+L K LARAG SRR E ++ AGRVSV+G++ + LG +++ IR+DG I+ Sbjct: 2 ERLHKFLARAGVDSRRACEELMLAGRVSVNGRVQRELGTQIDPDK-DDIRVDGEQIT--- 57 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 ++ VL +KP + T +DPEGR TV D + R VGRLD ++ GLLL T Sbjct: 58 PPTELHYVL-LHKPSSVMTTLHDPEGRQTVADLVKSH--NRLFPVGRLDYDSEGLLLLTD 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+L RL HPS EVE+EY + +LR+ GV+L+DG A I+ Sbjct: 115 DGDLTFRLTHPSFEVEKEYQALLNQTPSVEQLREWRNGVELDDGKTAPAWIELLNETADG 174 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W V + EGRNR++RR+ EA+G++V RLIR+R G + L + L G W L + + LR Sbjct: 175 TWVRVVIHEGRNRQIRRVAEALGLEVRRLIRLREGPLTLGE-LQAGQWRALTPTEIDRLR 233 >UniRef50_Q2SRP5 Ribosomal large subunit pseudouridine synthase B n=3 Tax=Mollicutes RepID=Q2SRP5_MYCCT Length = 252 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 129/239 (53%), Gaps = 12/239 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQKV++ G+ SRR E +I RV V+ +I KLG V++ P +I ID L++ Sbjct: 4 ERLQKVISSRGYCSRRTAEKLILENRVKVNNQIINKLG--VKIDPKAEIIIDNKLVTSDS 61 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + ++ + +YKP L T DP+ R TV D L R VGRLD + GLL+ T Sbjct: 62 NNQKYYYL--FYKPRLVLTTMYDPKKRKTVADYFKDL-NHRVYPVGRLDYDVSGLLIMTN 118 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIKFSGG 177 DGEL+N +MHP E + Y GQV+ ++ L +GV +++ + K IK+ Sbjct: 119 DGELSNFIMHPKYEFLKTYQGLCQGQVNKQQVNQLIKGVYIDNNYLTKAYSSKLIKYDKL 178 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 + ++ +T+ EG+ V++++E++ Q+ +L R R + + P G + EL + + Sbjct: 179 KNVS-IVELTINEGKKHHVKKMFESIQAQLLKLKRTRIEFLEIDNLKP-GQYRELKVHE 235 >UniRef50_Q6MIA3 Putative pseudouridylate synthase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIA3_BDEBA Length = 265 Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/200 (36%), Positives = 117/200 (58%), Gaps = 11/200 (5%) Query: 23 IIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRESAEQICRVLAYYKPEGELCT 81 +IE G V+V+GK + +LG +V+ +I +DG + + ++I +L KP G L T Sbjct: 1 MIEEGLVTVNGKRVYELGIKVDPQSD-RILVDGKPLR-KPLTQKIYAILN--KPTGVLTT 56 Query: 82 RNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYA 141 +DP RPTV + L +L R VGRLD ++ G+LL T DG+ AN++MHP EV + Y Sbjct: 57 MDDPHDRPTVAEYLTEL-PVRVFPVGRLDWDSEGMLLLTNDGDFANKVMHPKAEVTKTYL 115 Query: 142 VRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN-----QWYNVTLTEGRNREV 196 V++ G+ + +L L +GV + G + + I+ G N +WY + +TEG+NR++ Sbjct: 116 VKLNGKPEPFQLEKLKKGVSIVGGKVSARHIEKIKKTGDNKSEKYEWYKIVITEGKNRQI 175 Query: 197 RRLWEAVGVQVSRLIRVRYG 216 R+++ +G V RL RV G Sbjct: 176 RQMFAKIGFDVMRLQRVAIG 195 >UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1S2_9BACT Length = 241 Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 123/235 (52%), Gaps = 12/235 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRE 61 E+L K+L+ AG SRR +I+AGRV+V+G+ + + G RV PG ++ DG V Sbjct: 7 ERLVKILSAAGIASRRGAGDLIKAGRVTVNGETVFEPGFRV--APGDRVEYDG----VPV 60 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 AE+ + KP G +CT DP D + R + GRLD ++ GL+LF+ Sbjct: 61 LAEERKVYIMLNKPRGYVCTNADPHADLKAVDLIRLTPPLRLFSAGRLDKDSEGLILFSN 120 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+ RL HP E+ + Y VRV + A+L + RGV + G + Sbjct: 121 DGDYVARLTHPRHEILKVYQVRVRREFKPAELEQMRRGVLERGELLKVHAVSRCG----D 176 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 Y +TL EG+NRE+RRL A+G RL R++ G + L GLP G W EL A+ Sbjct: 177 CTYLITLNEGKNREIRRLTAALGSPTRRLKRLQIGALRL-GGLPVGNWRELTPAE 230 >UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BUF1_DESAD Length = 251 Score = 117 bits (293), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 132/250 (52%), Gaps = 12/250 (4%) Query: 1 MSEK----LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTP-GLKIRIDGH 55 M+EK L K +A AG SRR + +++ G+V V+G++A ++V P ++ ++G Sbjct: 1 MTEKTTIRLNKYIASAGIASRRGADELVQKGKVKVNGELAD-SPGIQVDPDNDRVEVNGK 59 Query: 56 LISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLP-KLRGARWIAVGRLDVNTC 114 L+ E ++ + +L +K + T DP+GR TV D LP + R VGRLD + Sbjct: 60 LVQHDEKSKDLYILL--HKTIETVTTAKDPQGRKTVLDLLPPDVINRRVFPVGRLDFYSE 117 Query: 115 GLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF 174 G+LL TTDGEL NR+ HP + + Y V + G++ + +L + G+ LED +K Sbjct: 118 GMLLLTTDGELCNRMTHPKWHLPKIYHVTIRGKLSEKELSVMQNGMYLEDKGELLAPVKI 177 Query: 175 SGGEGINQW--YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 + + Y + L +G NR++RR++ + RL RVR G I L L G W EL Sbjct: 178 KAISEVGETTKYEMELRQGINRQIRRMFGEFDKTILRLKRVRQGRIEL-GALKPGKWREL 236 Query: 233 DLAQTNYLRE 242 + L++ Sbjct: 237 SAKELTLLKK 246 >UniRef50_D0RRJ0 Ribosomal large subunit pseudouridine synthase B n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRJ0_9RICK Length = 245 Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 127/245 (51%), Gaps = 15/245 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ K+LA +GSRREIE++I ++ ++ KI L V KI I+G + ++ Sbjct: 7 RIAKLLASYNYGSRREIENLISNQKIKLNNKII-LTPATFVNEEDKITINGKKVLFKKK- 64 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 +L YKP+ +C++N + R +++ L + +I GRLD + GL++ T D Sbjct: 65 ---ISILKLYKPKNVICSKNKQDKREIIYEILDS-KYKNFIFAGRLDFKSEGLIILTNDS 120 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI--N 181 L L P + ER+Y VR+FG + KL+ SRG ++ +K F I N Sbjct: 121 SLTRNLELPKNKFERKYEVRIFGDFNVEKLKIKSRGTKI--NGIQYKPFDFKIKSKIKKN 178 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYG----DIPLPKGLPRGGWTELDLAQT 237 + L EG+ E+R +++ + +QV++L RV YG D LP L + EL+ + Sbjct: 179 TLIEMNLKEGKKNEIRNIFKELNLQVNKLKRVSYGPFKLDNMLPGDLKKPSKIELEKYE- 237 Query: 238 NYLRE 242 NY+R+ Sbjct: 238 NYIRK 242 >UniRef50_O51155 Uncharacterized RNA pseudouridine synthase BB_0129 n=22 Tax=Borrelia RepID=Y129_BORBU Length = 249 Score = 117 bits (292), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 126/245 (51%), Gaps = 9/245 (3%) Query: 9 LARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAEQICR 68 LA G GSRR E +I V V+ IAKLGD+V T G +I + ++ Sbjct: 13 LAEKGVGSRRFCEELIRKKLVRVNNTIAKLGDKV--TLGDRIIYKKQIFVFKDFQINNRI 70 Query: 69 VLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGELANR 128 LA KP LC+ D +GR + L R ++GRLD + GLLLFT DG+ AN Sbjct: 71 YLALNKPRNYLCSNFDVDGRKLAISLVQPLFKERVFSIGRLDFKSSGLLLFTNDGKFAND 130 Query: 129 LMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ-WYNVT 187 ++HP ++VEREY + +D+ L G++++ + K E +N+ + Sbjct: 131 IIHPRQKVEREYIIESKKDIDENLLISFKSGIKVKK-----EFFKLKSYEILNKNSARLI 185 Query: 188 LTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRELVELP 247 L EG+NRE+R+++ + + + ++ R+R G+I L L G + L++ N L+ +E Sbjct: 186 LDEGKNREIRKVFLSKNIFLKKIHRIRIGNINLD-SLKEGQVKIVPLSKINSLKSRLEKL 244 Query: 248 PETSS 252 + S+ Sbjct: 245 NDNSN 249 >UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales RepID=B4U4Q4_STREM Length = 266 Score = 116 bits (291), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 82/250 (32%), Positives = 138/250 (55%), Gaps = 26/250 (10%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-------KLGDRVEVTPGLKIRIDGHL 56 ++ K +A AG SRR+ E +I+ G V+++G++ K GD VE I+G Sbjct: 28 RINKYIAHAGVASRRKAEELIKRGLVTLNGQVVTDLATTVKSGDLVE--------IEGSP 79 Query: 57 ISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGL 116 I + E++ +L KP G + + +D +GR TV D LP+++ R VGRLD +T GL Sbjct: 80 IY---NEEKVYYLLN--KPRGVISSVSDDKGRQTVIDLLPQVK-ERIYPVGRLDWDTSGL 133 Query: 117 LLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLE---DGPAAFKTIK 173 L+ T DG+ ++++HP E+++ Y RV G V LR L+RGV ++ PA ++ I+ Sbjct: 134 LILTNDGDFTDKMIHPRNEIDKVYLARVKGVVTKESLRPLTRGVVIDGKKTKPARYRIIR 193 Query: 174 FSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELD 233 + +T+ EGR+ +V++++EAVG V +L R ++G + + +GL G L Sbjct: 194 VEPDKN-RSIVELTIHEGRHHQVKKMFEAVGHLVDKLSRTQFGSLDV-RGLKPGEARRLS 251 Query: 234 LAQTNYLREL 243 + + L L Sbjct: 252 KKEVSQLHHL 261 >UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae RepID=A5IKF7_THEP1 Length = 239 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 73/227 (32%), Positives = 126/227 (55%), Gaps = 14/227 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L + L+ +G G+R+E++ +I+ GRV+V+G++ L V+ + +DG ++ Sbjct: 2 RLDRYLSNSGVGTRKEVKKLIKQGRVTVNGRVV-LDPGHSVSENDVVVLDGETVNFHRKV 60 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + ++KP G + + DP T+ + LP L+G VGRLD + GLL+ T+DG Sbjct: 61 -----YILFHKPSGYVTSTKDPHSE-TIMEFLPPLKGI--FPVGRLDKDAEGLLIITSDG 112 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI-NQ 182 + A+R++ P VE+EY V+V G+V + K+ L GV L DG A K E + N Sbjct: 113 DFAHRVISPKWSVEKEYIVKVEGEVTEDKIEKLKNGVTLRDGFFA----KAKCVEKLSND 168 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGW 229 + +TEG+ +++R+ AVG++ L R R G + LP+ + G + Sbjct: 169 TLKIVITEGKYHQIKRMTVAVGLRTVHLKRTRIGRLVLPEDMKPGEY 215 >UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine synthase B n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C337CA Length = 254 Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 89/258 (34%), Positives = 133/258 (51%), Gaps = 21/258 (8%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M +++QK+L++ G SRR E +I R+ ++G+I LGD+ + L + +DG +I Sbjct: 1 MKKRVQKILSQLGIASRRHAEILILEKRLKLNGQIVLLGDKADPNHDL-LELDGKIIKSH 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLP-KLRGARWIA-VGRLDVNTCGLLL 118 + Q+ +L KP G +C+ D + R V D LP LR I VGRLD+N+ G LL Sbjct: 60 KKT-QLFYILVN-KPVGIICSCKDSQNRSIVMDLLPSNLRKGMGIHPVGRLDMNSSGALL 117 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIKF 174 T DG L RL HP + + Y V V G A L+D +GV L DG PA + I Sbjct: 118 LTNDGNLTLRLTHPRYHLPKIYEVLVRGNFTQAILKDWRQGVVL-DGKKTLPAYLEVINN 176 Query: 175 SGGEGINQWYN--VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPK----GLPRGG 228 + Q+ N + LTEG+NR +RR+ + + V +L R G I L + G Sbjct: 177 N-----RQYTNLKIILTEGKNRHIRRIAQKFELDVIKLHRTAIGPISLSTSKVDNVKLGH 231 Query: 229 WTELDLAQTNYLRELVEL 246 + L ++ N L+ L +L Sbjct: 232 YRLLSSSEINTLKYLTKL 249 >UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales RepID=C5EVC9_9FIRM Length = 294 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 136/251 (54%), Gaps = 13/251 (5%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI---SVRE 61 L K L++ G SRRE + +IEAG+V VDG A +G +V+ PG K+ DG + S + Sbjct: 36 LNKWLSQMGVCSRREADRLIEAGKVWVDGSPAAMGQKVK--PGQKVVCDGVPVNGGSGAD 93 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 S + +L KP G +CT +D + + + L R VGRLD ++ GLLL T Sbjct: 94 SRKPKPVLLVVNKPRGIVCTTSDKDRAMNIVEYLDY--PERIYPVGRLDKDSEGLLLMTN 151 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+L N++M E+EY V V + D + +++G+ L + + K +G Sbjct: 152 QGDLVNKIMRSGNAHEKEYIVTVDRPLTDDAMDRMAKGIYLRELETVTRPCKVKRVDG-- 209 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + +++ LT+G NR++RR+ EA G V RL+RVR +I L GL G E + Q Y R Sbjct: 210 KTFSIILTQGLNRQIRRMCEACGCHVERLVRVRIMNIRL-DGLETGASRE--VGQEEY-R 265 Query: 242 ELVELPPETSS 252 EL+ L ++SS Sbjct: 266 ELMRLLRDSSS 276 >UniRef50_B1ZYG8 Pseudouridine synthase n=3 Tax=Verrucomicrobia RepID=B1ZYG8_OPITP Length = 266 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 92/251 (36%), Positives = 133/251 (52%), Gaps = 16/251 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +LQK LA AG SRR E++I +G V V+G A++G +V TPG+ R+ VR +A Sbjct: 8 RLQKYLADAGVCSRRAAEALIASGEVWVNGAPAQVGQKV--TPGVD-RVTTGGKPVRTTA 64 Query: 64 EQICRV-LAYYKPEGELCTRNDPEGRPTVFDRLPK-LRGARWIAVGRLDVNTCGLLLFTT 121 + RV LA +KP G +CT DP T+F LP+ R+ GRLD ++ GL++ TT Sbjct: 65 QP--RVTLAMHKPRGLVCTNEDPHNPETIFSVLPREFAKLRFFCAGRLDKDSEGLVILTT 122 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGV-----QLEDGPAAFKTIKFSG 176 DG+LA+RLMHPS V + Y V + +L L +GV +L+ AA S Sbjct: 123 DGDLAHRLMHPSNLVVKRYHVTLEKPFPAKRLPLLVKGVIAQGERLKVERAALINPSVS- 181 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 E N +V + G+ RE+R L+ +G V RL R + G L KG+P ++ A+ Sbjct: 182 HEATN--LDVHMHHGKKREIRLLFTELGYPVKRLRRYQIGGFRL-KGIPLRAMKKMSPAE 238 Query: 237 TNYLRELVELP 247 L + P Sbjct: 239 IESLFRVPRTP 249 >UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae RepID=Q7MMX9_VIBVY Length = 347 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 89/291 (30%), Positives = 147/291 (50%), Gaps = 28/291 (9%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +++L K ++ G SRRE + +IE GRV+++GK ++G +V PG + +DG ++ +E Sbjct: 6 AKRLNKYISETGFCSRREADKLIEQGRVTINGKQPEMG--TKVLPGDDVCVDGKPVAAKE 63 Query: 62 SAEQICRVLAYYKPEGELCT--RNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 I A KP G CT RN P + D + + R +GRLD + GL+ Sbjct: 64 KPVYI----ALNKPTGITCTTERNIPGN---IVDFIGHKK--RIFPIGRLDKPSDGLIFL 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG---PAAF-KTIKFS 175 T DG++ N+++ E+EY VRV + ++ +S GV + D P + KFS Sbjct: 115 TNDGDIVNKILRAGNHHEKEYVVRVDKPITPEFIKAMSSGVNILDTVTLPCKVTQETKFS 174 Query: 176 GGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLA 235 + + LT+G NR++RR+ EA+G +V +L RVR +I L G+P G W L Sbjct: 175 --------FRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNISL-DGIPNGKWRYLTDD 225 Query: 236 QTNYLRELVE--LPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRS 284 + + + E + E +S+V + R R + + +Q S RR+ Sbjct: 226 EVTEILAMCEGSVGTEEASRVDAKGRRIRKATDAKLFDSREENQTSTARRN 276 >UniRef50_B3PMD0 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=B3PMD0_MYCA5 Length = 251 Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 69/216 (31%), Positives = 121/216 (56%), Gaps = 14/216 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 K+QK +++ G+ SRR+ E +I+ R+ ++ ++A LG RV +I IDG ++++ Sbjct: 13 KIQKAISQVGYCSRRQAEELIKQKRIKINHQVATLGQRVLADD--QIFIDGKKLNIKPPK 70 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 L + KP+ +CT DPE R T+++ + L+ + +VGRLD N+ G++L T DG Sbjct: 71 ----FYLVFNKPKNTICTLKDPEKRKTIYEYMG-LKEYAY-SVGRLDFNSTGIILVTNDG 124 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTI-KFSGGEGINQ 182 + AN + HPS ++R Y V + ++ + L+ + +G + +++ K + + Sbjct: 125 DFANLIAHPSANIKRVYEVVLEKELSEGDFNYLNSNKVILNGKKSSQSLSKLAPFK---- 180 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI 218 Y+V+L EGRN V+ L+ V V L RV YG I Sbjct: 181 -YSVSLYEGRNHHVKNLFLLVNNYVKELHRVSYGPI 215 >UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=B1C6T1_9FIRM Length = 238 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 76/218 (34%), Positives = 114/218 (52%), Gaps = 15/218 (6%) Query: 1 MSEKL--QKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLI 57 M EK+ K LA G SRR+ E II G+V+V+G++ + LG + V L +++ G + Sbjct: 1 MEEKMRINKYLASCGVASRRKCEEIISRGKVTVNGEVVRELGTIINVEKDL-VKVYGKEV 59 Query: 58 SVRESAEQICRVLAYY---KPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTC 114 S+ YY KP+G + G TV D L K + R VGRLD +T Sbjct: 60 SLDTKK-------VYYMLNKPQGVISASKSKYGEETVVDLLGK-KEHRLFPVGRLDKDTT 111 Query: 115 GLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF 174 GL++ T DG+ A +L HP E E+ Y V G+VD L L +GV ++ + ++ Sbjct: 112 GLIILTNDGDFAYKLTHPKYEKEKTYEALVKGKVDSKSLDKLKQGVVIDGKKTSRAKVRL 171 Query: 175 SGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIR 212 G+N +TL EGR R+V+++ E VG +V +L R Sbjct: 172 VKMIGVNSLVEITLIEGRKRQVKKMCEKVGHKVIKLNR 209 >UniRef50_B7G1P9 Predicted protein n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G1P9_PHATR Length = 331 Score = 114 bits (284), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 83/259 (32%), Positives = 134/259 (51%), Gaps = 34/259 (13%) Query: 4 KLQKVLARAGHG---SRREIESIIEAGRVSVDGKI----AKLGDRVEVTPGLKIRIDGHL 56 +L KVL+ SRRE E +I +G V++ G + + ++ G ++++G + Sbjct: 38 RLSKVLSLHTENLVISRREAERMIRSGDVTLAGNVLTSPMMMLKEEDLNDG-ALKVNGKV 96 Query: 57 ISVR-----------ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGA---- 101 +++R E++ RV +K GE+ NDP RP++ RL +RG Sbjct: 97 VNLRSSKGPRSVAGEENSVHKTRVWIAHKLPGEIVADNDPYDRPSLLQRL--IRGGVGKV 154 Query: 102 -----RWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDL 156 +VGRLD+NT GL+L T DG+ A + PS ++ R Y VRV G + D KL + Sbjct: 155 GKTRLHLKSVGRLDMNTEGLILVTNDGKYAREMELPSNKLHRTYRVRVHGLLTDHKLARI 214 Query: 157 SRGVQLED---GPAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRV 213 +GV +E P + N+W VT TEG+NR++R +++ +G+ V+RLIR+ Sbjct: 215 RKGVTVEGIRYPPMRIIPESTRQSQSTNKWLKVTCTEGKNRQIRNVFKYLGLTVTRLIRI 274 Query: 214 RYGDIPLPKGLPRGGWTEL 232 YGD L + +P G E+ Sbjct: 275 SYGDYRL-QTIPPGMAIEV 292 >UniRef50_C4XEA6 Pseudouridine synthase n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XEA6_MYCFE Length = 269 Score = 113 bits (283), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 131/246 (53%), Gaps = 19/246 (7%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++QK++A+ G+ SRR+ E IE V V+GKI +LGD+ + +I+I+ LIS+++ Sbjct: 29 RVQKLIAQTGYCSRRKAEEYIEKKLVKVNGKIVQLGDKA--SENDEIKINNQLISLQKPN 86 Query: 64 EQICRVLAYY---KPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 Y+ KP+ + T DP+GR TV D + R VGRLD +T G LL T Sbjct: 87 ------FVYFLLNKPKKTISTVKDPKGRKTVVDLIN--YSERIAPVGRLDYDTTGALLLT 138 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 D E+ N+L HP E+ R Y VR+ + + + ++ G+ + +G + + + + Sbjct: 139 NDWEMINKLTHPKYEILRTYRVRIDSPLSLKEFKLINAGL-IVNGKFSKQIVDQVDTKS- 196 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 Y VTL G ++ L++A+ +V L RV + ++ + K +P G + L L + L Sbjct: 197 ---YLVTLHVGSYHHIKELFKALNHEVINLKRVSFANLTVEK-MPEGSYRTLTLKEIKDL 252 Query: 241 RELVEL 246 + L+ L Sbjct: 253 KVLISL 258 >UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales RepID=A6LIA0_PARD8 Length = 495 Score = 113 bits (282), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 128/241 (53%), Gaps = 14/241 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSV-DGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ AG SRRE + I+ G V V D + +LG ++ R D +++ E Sbjct: 261 RLNKFLSNAGVCSRREADEFIQKGAVKVNDVVVTELGTKI-------TRQD--VVTFNEK 311 Query: 63 AEQICR--VLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 QI + KP+ + T +DP+ R TV D + R VGRLD NT G+LL T Sbjct: 312 PVQIESKVYIVLNKPKNCVTTSDDPQERLTVMDLVKNACQERIYPVGRLDRNTTGVLLLT 371 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG+LA++L HPS + ++ Y V + V + ++ G++LEDG I ++ + Sbjct: 372 NDGDLASKLTHPSFKKKKIYHVWLDKNVAIEDMEKIANGLELEDGEIHADAISYASEDDK 431 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +Q + + GRNR VRR++E++G V++L RV + + K L RG W L+ + N L Sbjct: 432 SQV-GIEIHSGRNRIVRRIFESLGYHVTKLDRVYFAGL-TKKNLGRGKWRYLNEREVNAL 489 Query: 241 R 241 R Sbjct: 490 R 490 >UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae RepID=C6X4T2_FLAB3 Length = 371 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 80/241 (33%), Positives = 130/241 (53%), Gaps = 10/241 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A +G SRRE + +I G V V+G + ++G +V+ T K+ DG I+ Sbjct: 140 RLNKYIANSGICSRREADELITQGLVQVNGAVVTEMGYQVQKTD--KVIFDGQGIT---- 193 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E+ VL KP+G + T D + R TV D + R VGRLD +T G++L T D Sbjct: 194 PEKPVYVL-LNKPKGYISTTKDEKARKTVMDLVANASPYRVFPVGRLDRSTTGVILLTND 252 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G + +L HPS +++ Y V + ++D A L ++ GV+LE+G A +I + G+ N+ Sbjct: 253 GHMTKKLTHPSFNMKKIYHVTLDRKLDRADLNAIAEGVRLEEGVAEVDSISYIEGKPKNE 312 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + G NR VRR+++ +G +V L RV + + K + RG W L + N L+ Sbjct: 313 -VGIEIHIGWNRVVRRIFQRLGYEVEALDRVMFAGL-TKKNIKRGHWRILTELEVNNLKM 370 Query: 243 L 243 + Sbjct: 371 M 371 >UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes RepID=Q11YT0_CYTH3 Length = 562 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 127/249 (51%), Gaps = 26/249 (10%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K ++ +G SRRE + +I G V V+G + +LG +V PG ++ + +++ Sbjct: 330 RLNKYISNSGICSRREADQLIIEGTVKVNGIVVTELG--YKVKPGDSVKYNNKVLN---- 383 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E+ VL KP+ + T D R TV + R VGRLD NT GLLLFT D Sbjct: 384 PEKSVYVL-LNKPKDFITTMEDENDRKTVMQLVANATKERIYPVGRLDRNTTGLLLFTND 442 Query: 123 GELANRLMHPSREVEREYAVRV--------FGQVDDAKLRDLSRGVQLEDGPAAFKTIKF 174 GELA +L HPS +V++ Y V + F ++ D K+ V++++ + K Sbjct: 443 GELAQKLTHPSNKVKKIYEVELDKPITAEDFDKIVDGKIHLFDGPVKVDEAAIISPSKKI 502 Query: 175 SGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDL 234 G + + EGRNR VRR++E++G V +L RV Y + K +PRG W L Sbjct: 503 IG---------IEIHEGRNRIVRRIFESLGYDVLKLDRVMYAGL-TKKNIPRGSWRYLTA 552 Query: 235 AQTNYLREL 243 + N ++ L Sbjct: 553 TEVNKIKYL 561 >UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NDY8_LEPBD Length = 228 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/246 (30%), Positives = 125/246 (50%), Gaps = 25/246 (10%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K +A G SRR+ + +I GRV+V+ A +G ++V P +RIDG + + Sbjct: 2 RLNKFIAETGFCSRRKADELINEGRVTVNKHEAIIG--MDVKPEDVVRIDGERVKLNTRY 59 Query: 64 EQICRVLAYY---KPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E YY KP+ LC+ D GR D + AR GRLD T GL++ + Sbjct: 60 E-------YYILNKPKRVLCSNEDKFGRRLAVDFIKS--RARLFTYGRLDFMTEGLIIIS 110 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLE---DGPAAFKTIKFSGG 177 DGE+ N +MHP +++ + Y +V +++D + L GV ++ PA K I Sbjct: 111 NDGEVYNHVMHPRKKLYKSYIAKVSREIEDKDIEALQHGVVIDGKRTAPAKVKKID---- 166 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 + + + EGRNR++R++ E +G V+ L R++ G++ L L G + L+ + Sbjct: 167 ---KKELRIAIFEGRNRQIRKMLETLGYNVNSLKRIKVGELTLG-NLQVGEYRALNEDEI 222 Query: 238 NYLREL 243 YL+ L Sbjct: 223 KYLKSL 228 >UniRef50_C9LMR9 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMR9_9FIRM Length = 239 Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/246 (35%), Positives = 133/246 (54%), Gaps = 12/246 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISV 59 M E+LQK+L+ AG SRR+ E +I AGRV V+G++ +LG +V KI G ++ Sbjct: 1 MKERLQKILSHAGVCSRRKAEELILAGRVRVNGRVVRELGTEADVCTD-KIEALGEIVK- 58 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 + R ++KP+ + + +DP GR TV D ++R R VGRLD ++ GLLL Sbjct: 59 ----PEPLRYYLFHKPDCVITSVSDPAGRRTVMDYFRRVR-ERVFPVGRLDYHSEGLLLV 113 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSG--G 177 T DG+L L HP EV++EY V V G+ + + + +GV+++ G A I+ G Sbjct: 114 TNDGQLDFILTHPCHEVQKEYEVVVRGKFSEKLAKKMEKGVKIDSGVTAPCEIEVLGYDA 173 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 E + L EG+NRE+R++ E V L R+RY + L + RG + L A+ Sbjct: 174 EKNKTRLRMVLHEGKNREIRKMMEIFHYPVFELKRIRYSFLTL--DVNRGQYRRLTAAEV 231 Query: 238 NYLREL 243 L EL Sbjct: 232 KKLYEL 237 >UniRef50_UPI0001BC54DC ribosomal large subunit pseudouridine synthase B n=3 Tax=Fusobacterium RepID=UPI0001BC54DC Length = 239 Score = 112 bits (280), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/243 (36%), Positives = 133/243 (54%), Gaps = 14/243 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ K LA G SRR+++ IE GR+SV+G +A G +V I ++G ++ Sbjct: 7 RINKFLASKGLASRRQVDLWIEEGRISVNGSLATSGQKVSEEDD--IVVNGKS-ISQKKQ 63 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 +++ +L YK E L D GR TV D + L R VGRLD T GL+L T DG Sbjct: 64 KKVYYLL--YKEEEVLSAVKDDRGRRTVVDCV--LSPYRIFPVGRLDYRTSGLILLTNDG 119 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG---PAAFKTIKFSGGEGI 180 +L NR+MHP E+ + Y V G + +L+ L GV+LE+G A +K+ G Sbjct: 120 DLFNRMMHPRAEIFKSYEVLAKGHLTKEQLKTLEEGVELEEGKTLAALIAKVKYEKG--- 176 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N ++ +++ EG+NR++RR+ EAVG +V RL R + G + L GL G + L+ + YL Sbjct: 177 NTFFEISIREGKNRQIRRMVEAVGSRVYRLRRTKIGKLSLD-GLSLGEYRALEEKEIEYL 235 Query: 241 REL 243 L Sbjct: 236 YSL 238 >UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXU0_DYAFD Length = 555 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 127/241 (52%), Gaps = 14/241 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + +A AG SRRE + +I +G++SV+GKI ++G +V P ++ ++ Sbjct: 324 RLNRYIANAGICSRREADDLISSGQISVNGKIVTEMG--YKVRPTDVVKYGKKALN---- 377 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E++ +L KP+ + T +DPE R TV D + R VGRLD NT GLLL T D Sbjct: 378 PEKMVYILIN-KPKDYITTTDDPEERKTVLDIIAGACSERVYPVGRLDRNTTGLLLLTND 436 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA +L HPS +++ Y + + L GV+LEDG + + Q Sbjct: 437 GELAEKLTHPSSGIKKIYQAELDKPITTEDFEQLKAGVELEDGFIRPDEVGLVTPDA--Q 494 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGW---TELDLAQTNY 239 + + GRNR VRR++E +G +V +L R + + K LPRG W TE ++ + + Sbjct: 495 VVGLEIHSGRNRIVRRMFEHLGYEVQKLDRTVFAGL-NKKDLPRGKWRFLTEKEVIKLKF 553 Query: 240 L 240 L Sbjct: 554 L 554 >UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SYF2_9FIRM Length = 239 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 119/237 (50%), Gaps = 19/237 (8%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K L GSR +++ I+ G VSV+G A D ++I+ +++ + Sbjct: 2 RLDKFLVEMNIGSRSQVKQYIKKGMVSVNGTNAASSD---------MKINEDTDTIKYNG 52 Query: 64 EQIC----RVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 +Q+C R KP G + D TV D L VGRLD++T GLL+ Sbjct: 53 KQLCYSKYRYFLLNKPAGCVSATKD-NVHQTVIDLLNGENTKDLFPVGRLDLDTEGLLII 111 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIKFS 175 T DG LA+ L+ P+ + + Y + G VDD + +G+ + D PA+ K I+ Sbjct: 112 TNDGRLAHHLLSPAHHIAKTYYADIDGYVDDQTISLFKQGIDIGDDTPTLPASLKIIEAD 171 Query: 176 GGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 G ++ +T+TEGR +V+R+++AV + V+ L R+ G++ + LP G + EL Sbjct: 172 RSTGSSRI-ELTITEGRFHQVKRMFQAVNMSVTFLKRISMGNLHIADDLPTGSYREL 227 >UniRef50_A9SG51 Predicted protein n=3 Tax=Embryophyta RepID=A9SG51_PHYPA Length = 560 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 88/250 (35%), Positives = 128/250 (51%), Gaps = 21/250 (8%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLK--IRIDGHLISVR 60 E+L KVLA AG SRR E II AGRV V+GK+ + + V P LK I +DG + + Sbjct: 242 ERLSKVLAAAGVASRRGSEDIIFAGRVKVNGKVCTV-PQTPVNP-LKDTIFLDGRSLPKK 299 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPT---------VFDRL-PKLRGARWIAVGRLD 110 + A KP+G +C+ +P ++D+ P + R VGRLD Sbjct: 300 PPPK---FYFALNKPKGYICSSAKDAPKPALSLLEDYWKIWDKKNPGVSRPRLFTVGRLD 356 Query: 111 VNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED---GPA 167 V T GLLL T DG+ A R+ HPS + +EY V +V +L+ ++ G +++D P Sbjct: 357 VATSGLLLITNDGDFAQRVSHPSSGLTKEYIATVTERVTKRQLQLIAGGTKVQDVHCVPT 416 Query: 168 AFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRG 227 + + G+ N+ + + EGRNREVR L G++V L RVR G + L + L G Sbjct: 417 EVELLPPEPGDARNR-IRIVVCEGRNREVRELVANAGLEVLALKRVRIGGLSLSRKLSPG 475 Query: 228 GWTELDLAQT 237 + L QT Sbjct: 476 KFEVLTETQT 485 >UniRef50_Q04T62 Pseudouridine synthase n=4 Tax=Leptospira RepID=Q04T62_LEPBJ Length = 244 Score = 111 bits (277), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/221 (35%), Positives = 119/221 (53%), Gaps = 9/221 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + LA G GSRR+ E +I G+++++GK + LG +++ PG + +L +V E Sbjct: 14 RLNRFLADCGLGSRRKTEELILRGQITINGKRVTDLGTKIK--PGSDVV--SYLGNVVEP 69 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + R+L KP G LC+ D TVF LP L + GRLD+N+ GLL+ T D Sbjct: 70 TRKPKRILILNKPVGYLCSHGDRFHEKTVFSLLP-LTYKNFKIAGRLDLNSRGLLILTND 128 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAA-FKTIKFSGGEGIN 181 GELA ++ HPS E+EY V + + ++ + L+ G K +K G+ N Sbjct: 129 GELAQKISHPSNGSEKEYLVTLNHDPGEKWIQAAFQKGILDAGEILRAKMVKLVPGK--N 186 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPK 222 Y V L EG+ R++RR++ A G V L R+R G I L K Sbjct: 187 CVYRVILAEGKKRQIRRMFHASGASVIDLQRIRIGSIQLEK 227 >UniRef50_B1X5I1 Pseudouridine synthase, Rsu n=1 Tax=Paulinella chromatophora RepID=B1X5I1_PAUCH Length = 242 Score = 110 bits (275), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 122/233 (52%), Gaps = 8/233 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++LQK++A +G SRR+ E ++ G+V V+G +A LGDR ++ I IDG I + ++ Sbjct: 4 QRLQKLIAISGFCSRRQAEKLLIQGQVRVNGLLAHLGDRA-ISHVDTIEIDGKPIRLPDN 62 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLLFT 120 L KP G + + DP+GRPT+ D +P+ L+ + +GRLD N+ G L+ T Sbjct: 63 HV----TLLINKPTGVISSCQDPQGRPTILDLIPQSILQNRKLHPIGRLDSNSRGALILT 118 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDG L L HP ++ Y V V G+ + ++ +G+ L+ + +K Sbjct: 119 TDGSLTMNLSHPRYSHDKAYKVWVEGRPSSSVIKIWQQGIFLDKKMTSRVELKILCKRVT 178 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELD 233 + + + EGR R++RR +G V L R+ I L LP G W +L+ Sbjct: 179 STLLEIVMKEGRKRQIRRTATFLGHPVIDLQRIGIASIRL-GSLPEGRWRKLN 230 >UniRef50_C9M8T9 RNA pseudouridine synthase n=2 Tax=Synergistaceae RepID=C9M8T9_9BACT Length = 241 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 84/239 (35%), Positives = 121/239 (50%), Gaps = 16/239 (6%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISV 59 M+ +L K LA G GSRR++E +I AGRV+V+G ++ LG +VE G + +D + V Sbjct: 1 MTVRLNKYLASCGVGSRRKVEQLITAGRVTVNGYLVSDLGHQVE--DGDAVAVDDVEVHV 58 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRG-ARWIAVGRLDVNTCGLLL 118 + R KP G +C +P+ P V D LP+ R VGRLD+ + G+L+ Sbjct: 59 EAKTYIVIR-----KPRGYICAVTNPD-YPVVLDLLPRSYDRLRLFPVGRLDLQSEGILI 112 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED---GPAAFKTIKFS 175 T DG+ AN L+HPS V + Y VR+ + A L +L G E P + + Sbjct: 113 LTNDGDFANDLIHPSNGVTKTYEVRMNRVLTAADLENLRGGTVFEGRRLVPLSVDLLPDR 172 Query: 176 GGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDL 234 EG QW L EG RE+R + E G+ V L R G + L + L G + E+ L Sbjct: 173 RPEG--QWATFVLGEGVKREIRLMAEGCGMTVEVLFRRAIGRMEL-RTLKSGEFVEVTL 228 >UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gasseri RepID=Q042N1_LACGA Length = 245 Score = 110 bits (274), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 126/238 (52%), Gaps = 13/238 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ K LA GSR+E+ S+I+ V+V+G++ + + +V + +DG+ I A Sbjct: 14 RIDKYLANMNVGSRKEVHSLIKKKVVTVNGELVTIPKQ-QVKETDLVAVDGNKI-----A 67 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIA-VGRLDVNTCGLLLFTTD 122 Q KP+G + D + TV L + IA VGRLD +T GLLL T D Sbjct: 68 YQQYHYFLLNKPKGVISATED-RSQQTVISLLKTKDRYQGIAPVGRLDKDTTGLLLLTND 126 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIKFSGGE 178 G LA+ L+ P++ V + Y ++ G D + ++G+ L DG PA K +K Sbjct: 127 GALAHELLAPNKHVAKVYRAKIAGVPDPETAKKFAQGLILGDGTKLKPAKLKILKQDQDN 186 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 ++Q + + EG+ +++R++ AVG++V L RV G + LP L RG + E+DLA+ Sbjct: 187 NLSQI-EIQIQEGKYHQIKRMFGAVGMKVLELDRVSMGKLHLPADLKRGEYKEIDLAE 243 >UniRef50_A6DF49 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DF49_9BACT Length = 236 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 82/249 (32%), Positives = 125/249 (50%), Gaps = 25/249 (10%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A G SRR+ E ++ G ++++ ++ +L +V+V D + R Sbjct: 2 RIAKFIAACGVCSRRKAEELVNEGHITINNHRVTELSTQVDV--------DNDEVRYRRK 53 Query: 63 AEQICRVLAYY--KPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + L Y KP G +CT +DP D LP R VGRLD + GL++ T Sbjct: 54 PLVLEKKLYYLLNKPVGYVCTNDDPFAEKKAIDLLPD--KGRLYTVGRLDKPSEGLIVLT 111 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSR------GVQLEDGPAAFKTIKF 174 DG+LA + HPS E+E++Y V V G+V KL L R GV A K + Sbjct: 112 NDGDLAKIMTHPSFELEKKYRVTVKGRVSQKKLDYLVRDGLTFEGVNYRVLDARIKK-QV 170 Query: 175 SGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDL 234 GG I N TL EG+NRE+R++ +++ +QV RL R I L K LP G W + Sbjct: 171 PGGYMI----NFTLNEGKNREIRKICQSLDLQVKRLRRYEIAGIALGK-LPPGAWRPMTQ 225 Query: 235 AQTNYLREL 243 ++ +L+ L Sbjct: 226 SEVRFLKSL 234 >UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID=Q6G8H4_STAAS Length = 231 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 74/243 (30%), Positives = 123/243 (50%), Gaps = 21/243 (8%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTP-GLKIRIDGHLISVRES 62 ++ K LA G G+R E++ +++ G V+V+ ++ K + + P KI + G LI E Sbjct: 2 RIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIK-SPKTHIEPENDKITVRGELI---EY 57 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E + +L KP+ + D + TV D +P+ + VGRLD +T GLLL T D Sbjct: 58 IENVYIMLN--KPKDYISATEDHHSK-TVIDLIPEYQHLNIFTVGRLDKDTEGLLLITND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG---PAAFKTIKFSGGEG 179 G+ + LM P++ V ++Y V + + ++ GV L DG PA I Sbjct: 115 GDFNHELMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLSDGKVKPAILTYID------ 168 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGW---TELDLAQ 236 NQ +VT+ EG+ +V+R++ ++ +V L R++ D+ L L G + TE D + Sbjct: 169 -NQTSHVTIYEGKYHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDK 227 Query: 237 TNY 239 NY Sbjct: 228 LNY 230 >UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PP04_CHIPD Length = 516 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 116/230 (50%), Gaps = 15/230 (6%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAE 64 L K +A +G SRR+ ++ G+V+V+G++ P K+ +++ Sbjct: 282 LNKYIAHSGLCSRRKAVDFVKEGKVTVNGELI-------TEPAFKVTAKDE-VAINNRKI 333 Query: 65 QICRVLAY---YKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLLF 119 I + L Y KP+G + T +DPEGR TV + + R VGRLD NT GLLL Sbjct: 334 NIQKNLVYILLNKPKGYITTTDDPEGRKTVMELIQDATTEEQRVYPVGRLDRNTSGLLLL 393 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DGELA +L HP +++ Y V + + A ++ +GV LEDG A + + G Sbjct: 394 TNDGELAQKLAHPKHNIKKIYHVGLNKPLTKAHFENILQGVTLEDGVANVDALGYVEA-G 452 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGW 229 + + G+NR VRR++E + +V +L RV Y + K + RG W Sbjct: 453 DKTQVGIEIHSGKNRIVRRIFEHLEYEVEKLDRVTYAGL-TKKNINRGKW 501 >UniRef50_Q7VBH8 Pseudouridine synthase n=1 Tax=Prochlorococcus marinus RepID=Q7VBH8_PROMA Length = 237 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 124/240 (51%), Gaps = 5/240 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M E+LQK+++ +G SR++ E++I+ RV ++ +IA LG++ ++ + D + Sbjct: 1 MKERLQKIISNSGICSRKKAEALIDQKRVFINNEIASLGEKADILIDIIRIDDYIIPKNI 60 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 +S+ +V+ KP G + T D GR TV D LP VGRLD ++ G L+ + Sbjct: 61 KSS----KVILLNKPTGVISTCRDTHGRKTVLDLLPDNLQKGMHPVGRLDKDSRGALIIS 116 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 +G L L HP ++ Y+V + G L+ G++++ + +G Sbjct: 117 NNGLLTLHLTHPRFNHKKRYSVLITGVPSKNTLKKWRNGIEIDKKTTRKALVNIVKRQGN 176 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N + L EGRNR++R++ + +G V LIR+ G+I L GL G W E++ + N L Sbjct: 177 NTLLEIVLFEGRNRQIRKVADKLGHPVIDLIRIEIGNIKL-NGLKEGAWREINELEWNQL 235 >UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodictyon group RepID=Q3B289_PELLD Length = 250 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 81/250 (32%), Positives = 126/250 (50%), Gaps = 19/250 (7%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGL-KIRIDGHLISVRES 62 ++ + LA G SRR + ++ GRV+++G +A V+V PG ++ +DG + E Sbjct: 14 RINRYLAMCGIASRRAADQMVLEGRVTINGVLAS-EPGVKVVPGKDEVIVDGSKFAQPEG 72 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + + + KP + T +D R V D + R VGRLD T G+LL T D Sbjct: 73 RKIY---ILFNKPRNVITTSSDERNREMVLDFIDV--NERVYPVGRLDRKTTGVLLLTND 127 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED-----GPAAFKTIKFSGG 177 G LAN+LMHPS V++EY + A L L+ G++L D P K + G Sbjct: 128 GMLANKLMHPSSNVKKEYIAVLDAPFPQASLPLLTGGMRLSDTGEKVSPCQAKIM----G 183 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 +G W +++ EG+N +VRR+++ +G +V+RL R Y + + L RG W L + Sbjct: 184 DGSQVW--ISIHEGKNHQVRRMFKTLGFEVTRLDRPTYAGLTV-GDLRRGQWRHLTRTEV 240 Query: 238 NYLRELVELP 247 LR L P Sbjct: 241 QQLRHLAGSP 250 >UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepID=B6W7S5_9FIRM Length = 231 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/247 (31%), Positives = 133/247 (53%), Gaps = 24/247 (9%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGD-RVEVTPGLKIRIDGHLISVRES 62 ++ K +A+AG SRR+ E I+ G V V+GK KL D +V ++++ G L+ ++E Sbjct: 2 RINKYIAKAGLASRRKSEEYIKKGLVFVNGK--KLDDLSYQVKENDQVKVMGKLLEIKEK 59 Query: 63 AEQICRVLAYYK---PEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 YYK P G + + DP + + + L K+ R+ GRLD ++ GL+L Sbjct: 60 F--------YYKLNKPIGFISSNYDPHNKKDL-NSLVKI-DHRFFCAGRLDKDSHGLMLI 109 Query: 120 TTDGELANRLMHPSREVEREYAVRV---FGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSG 176 T DG++ N+L+HPS+++E+ Y V+V + D+A R +G++L K + Sbjct: 110 TNDGKITNKLIHPSKKIEKTYIVKVDKLLNKDDEALFR---KGIKLSVNEKT-SDAKINL 165 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 + ++ Y V + +G NR+VRR++ G +V L R++ G I L K L G + +L+ + Sbjct: 166 IDENSKIYEVIIHQGFNRQVRRMFLYFGSKVIDLKRIKIGQIELGK-LEDGKYKKLNKKE 224 Query: 237 TNYLREL 243 YL L Sbjct: 225 LEYLESL 231 >UniRef50_Q1IR68 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IR68_ACIBL Length = 254 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/245 (32%), Positives = 130/245 (53%), Gaps = 13/245 (5%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAE 64 L +VL++ G+ SR +I A V V+GK+ + +R T + R++ I++R + Sbjct: 15 LARVLSKLGYCSRARAFELIRADEVRVNGKVERNPERP--TDPARDRVEVAHIAIRAA-- 70 Query: 65 QICRVLAYY--KPEGELCTRNDPEGRPTVFDRLPKLRGARWIA-VGRLDVNTCGLLLFTT 121 R L Y KP G + T +D +GR T++ LP + W+A VGRLD + GLLL T Sbjct: 71 ---RFLYYVVNKPRGLITTASDEKGRETIYSLLPP--DSPWVAPVGRLDKASEGLLLLTN 125 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 D E A ++ P+ +++ Y V+V + + LSRG++ + K + G N Sbjct: 126 DSEWAAKITDPNSHLDKTYHVQVSTLPSEQMVEALSRGIRSDGELLLAKRVSILRAGGKN 185 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W + L EG+NR++RR+ A+ ++V RLIRV G + L + LP+GG L + L Sbjct: 186 GWLEIVLEEGKNRQIRRMVAALQIEVLRLIRVAIGPLTLGE-LPKGGCRALTAEEKAELD 244 Query: 242 ELVEL 246 + + L Sbjct: 245 DALRL 249 >UniRef50_Q4AAG8 Pseudouridine synthase n=6 Tax=Mycoplasma RepID=Q4AAG8_MYCHJ Length = 240 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 114/218 (52%), Gaps = 14/218 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ K L+ G SRR+ E +I GR+ ++ + AK+G + I +D I+ + Sbjct: 5 RINKFLSEMGVCSRRQSEKLILQGRIKINNETAKIGQIISQNDV--IELDQQKITKKPP- 61 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 A KP+ + +R DPE RPT+ + K VGRLD T GL+L T DG Sbjct: 62 ---IFWYALNKPKNYITSRFDPENRPTIMEFFSK--NEYLFPVGRLDFQTTGLILITNDG 116 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG-VQLEDGPAAFKTIKFSGGEGINQ 182 + N+L+HPS ++ER Y V+ + D ++R L+ +QL+ + K K S + Sbjct: 117 KTTNKLLHPSSKIERTYLVKTDFSLSDKEIRFLNDNKIQLDSVKSIQKIKKCSS-----R 171 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 Y VT+ +G N +++L+ ++ +V +L RV + +I L Sbjct: 172 TYLVTVWQGSNHHIKKLFLSISKKVLKLKRVSFANIKL 209 >UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepID=A2RP35_LACLM Length = 328 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 128/252 (50%), Gaps = 24/252 (9%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGL-KIRIDGHLISVRES 62 +L K LA +G GSR E++ +++ GRV+V G+I + G R +V ++ DG ++ +E Sbjct: 88 RLDKFLAESGLGSRSEVKVLLKKGRVTVAGEIQRDG-RFQVDKNSRQVAFDGQILDYQEY 146 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-----WIAVGRLDVNTCGLL 117 + KP+G + D VF + +L + VGRLD NT GLL Sbjct: 147 YYYLLN-----KPQGVVSATKD-----NVFKTVVQLLSEKDFRKDIFPVGRLDKNTEGLL 196 Query: 118 LFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIK 173 + T DG L + L P + VE+EY R+ G+V D + + G+ L++G P K Sbjct: 197 ILTNDGALGHDLTQPKKHVEKEYFARIDGKVTDEIINKFAEGLTLKNGEKARPGELFVEK 256 Query: 174 FSGGEGINQWYN---VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWT 230 G+ + W + V + EG+ +V+R++EAV + V L R+R G++ L L G + Sbjct: 257 TYKGDSQSGWVSEIRVIIHEGKFHQVKRMFEAVEMYVLYLKRIRMGNLALDSDLALGAYR 316 Query: 231 ELDLAQTNYLRE 242 L + + L++ Sbjct: 317 PLTIEEIENLKK 328 >UniRef50_Q13UY7 Pseudouridine synthase n=45 Tax=root RepID=Q13UY7_BURXL Length = 261 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 115/247 (46%), Gaps = 15/247 (6%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVT--PGLKIRIDGHLIS 58 ++ L+ +L G GSRR+ ++I RVS+ G + D T +DG Sbjct: 24 LAMNLESILFTQGFGSRRQCRALIADARVSIGGAVCTDADADFPTGDTTFSFTVDGVDWP 83 Query: 59 VRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWI-AVGRLDVNTCGLL 117 RE A L KP G C+R DP+ +VF LP R + VGRLD +T GLL Sbjct: 84 YREHA-----YLLLNKPAGYECSR-DPQHHLSVFSLLPPQFAGRGVQCVGRLDQDTTGLL 137 Query: 118 LFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL--EDGPAAFKTIKFS 175 L + DG+ + P R+V + Y +DDA+L L GV L E P A ++ Sbjct: 138 LLSDDGKFVHLFTSPKRKVPKVYVATTRHPIDDAQLSALRDGVLLNGEARPIAAVDVEAR 197 Query: 176 GGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLA 235 G + +T+ EG+ +V+R+ A G + L R R G + LP+ L RG W LD Sbjct: 198 GDHTL----ALTVMEGKYHQVKRMIAAAGNRCEALHRERIGGLALPEALARGAWQWLDET 253 Query: 236 QTNYLRE 242 LR Sbjct: 254 DLGSLRS 260 >UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F n=90 Tax=Bacteria RepID=RLUF_SHIFL Length = 290 Score = 107 bits (267), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 131/255 (51%), Gaps = 34/255 (13%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 S +L K ++ +G SRRE + IE G V ++GK A +GD+V+ PG ++++G LI RE Sbjct: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVK--PGDIVKVNGQLIEPRE 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + + + ++A KP G + T D E R + D + R +GRLD ++ GL+ T Sbjct: 64 AEDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVN--HSKRVFPIGRLDKDSQGLIFLTN 118 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL-----------EDGPAAFK 170 G+L N+++ + E+EY V V + D +R + GV + ++ P F+ Sbjct: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKEAPFVFR 178 Query: 171 TIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWT 230 +TL +G NR++RR+ E G +V +L R R ++ L G+P G W Sbjct: 179 ---------------ITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWR 222 Query: 231 ELDLAQTNYLRELVE 245 +L + L +L+E Sbjct: 223 DLTDDELIDLFKLIE 237 >UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG n=68 Tax=Bacteria RepID=YTZG_BACSU Length = 239 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 16/232 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLK-IRIDGHLISVRES 62 +L K+LA +G+GSR+E++++++AG V +DGK AK + V P + + + G + RE Sbjct: 2 RLDKLLANSGYGSRKEVKAVVKAGAVMIDGKPAK-DVKEHVDPDTQEVTVYGEPVDYRE- 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL-PKLRGARWIAVGRLDVNTCGLLLFTT 121 L KP+G L D + TV D L P+ GRLD +T G LL T Sbjct: 60 ----FIYLMMNKPQGVLSATEDSRQQ-TVVDLLTPEEMRFEPFPAGRLDKDTEGFLLLTN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKT----IKFSGG 177 DG+LA+RL+ P + V + Y V + Q+ + DL GV +E G +KT + Sbjct: 115 DGQLAHRLLSPKKHVPKTYEVHLKSQISREDISDLETGVYIEGG---YKTKPAKAEIKTN 171 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGW 229 + N +T+TEG+ +V+++ +AVG +V L R+ G + L L G + Sbjct: 172 DSGNTVIYLTITEGKYHQVKQMAKAVGNEVVYLKRLSMGRVSLDPALAPGEY 223 >UniRef50_C1FFP6 Predicted protein (Fragment) n=4 Tax=Mamiellales RepID=C1FFP6_9CHLO Length = 257 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 82/255 (32%), Positives = 123/255 (48%), Gaps = 27/255 (10%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLIS--VR 60 ++L K LA G SRR E +I AGRV V+G + T I +DG ++ + Sbjct: 4 QRLSKALAALGVASRRASEELIFAGRVQVNGVTVTMPQHAVSTSRDVIAVDGKVVQGGLE 63 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEG---RPTVFDRL----------------PKLRGA 101 + +KP+G LC+ + P G R + DRL P Sbjct: 64 SLGDGGHLYFLLHKPKGYLCS-SKPAGAGARASGQDRLVLDLFEDWREGWRKRHPGQLAP 122 Query: 102 RWIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQ 161 R VGRLDVNT G+LL TTDG+ R+ HPS ++ + Y V + A+++ ++ G + Sbjct: 123 RLFTVGRLDVNTTGMLLVTTDGQWCQRVAHPSSQIPKSYIVTAATRPTKAQIKKMAEGCE 182 Query: 162 LEDG----PAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGD 217 + DG P ++++ + G V + +GRNREVR L + GV V +L RVR G Sbjct: 183 V-DGVHVTPLRVESMEGARDGGPAHRILVDVVDGRNREVRVLSASAGVDVKKLKRVRVGG 241 Query: 218 IPLPKGLPRGGWTEL 232 + +P LP G + L Sbjct: 242 LRMPSELPIGKYMSL 256 >UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C4Z9Y4_EUBR3 Length = 250 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 76/245 (31%), Positives = 123/245 (50%), Gaps = 16/245 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISV--RE 61 +L K L+ G G+R E++ +I+ G+++++G +A P K+ D +SV R Sbjct: 13 RLDKFLSEMGLGTRSEVKKLIKTGQIAINGTVA-------AKPETKVDTDADEVSVNGRI 65 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 Q + KP G + D TV D + VGRLD++T GLLL T Sbjct: 66 VKYQRYEYYLFNKPSGCVSATCD-NVHDTVMDYITDAVHDDLFPVGRLDIDTEGLLLITN 124 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL-EDGPA--AFKTIKFSGGE 178 DG L++ L+ PS+ V + Y R+ G+V + G+ + E+ P A IK SG Sbjct: 125 DGALSHELLSPSKHVAKTYYARIDGEVTLDDIIRFKEGIDIGEEKPTKPAELVIKKSGSV 184 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 +T+TEG+ +V+R++EA+G +V L R+ G + LP L G + L A+T+ Sbjct: 185 S---EIELTITEGKFHQVKRMFEALGKRVIYLKRISMGPLKLPDDLKTGTYRALTQAETD 241 Query: 239 YLREL 243 L ++ Sbjct: 242 MLMQI 246 >UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F n=235 Tax=Bacteria RepID=RLUF_SALTI Length = 289 Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 77/255 (30%), Positives = 131/255 (51%), Gaps = 34/255 (13%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 S +L K ++ +G SRRE + IE G V ++GK A +GD +V G ++++G LI RE Sbjct: 6 STRLNKYISESGICSRREADRFIEQGNVFINGKRAAIGD--QVVAGDVVKVNGRLIEPRE 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + + + ++A KP G + T D E R + D + + R +GRLD ++ GL+ T Sbjct: 64 ADDLV--LIALNKPVGIVSTTEDGE-RDNIVDFVNHSK--RIFPIGRLDKDSQGLIFLTN 118 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL-----------EDGPAAFK 170 G+L N+++ + E+EY V V + D +R + GV + ++ P F+ Sbjct: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKEAPFVFR 178 Query: 171 TIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWT 230 +TL +G NR++RR+ E G +V++L R R ++ L G+P G W Sbjct: 179 ---------------ITLVQGLNRQIRRMCEYFGYEVTKLERTRIMNVSL-SGIPLGEWR 222 Query: 231 ELDLAQTNYLRELVE 245 +L + L +L+E Sbjct: 223 DLTDDELIDLFKLIE 237 >UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=B9MRL6_ANATD Length = 233 Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 127/232 (54%), Gaps = 20/232 (8%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L G GSR +++ +I G V+V+GK I ++ ++ + I +DG V + Sbjct: 2 RLDKFLTHCGFGSRSQVKKLIREGIVTVNGKQIVEVDFKINPEEDI-IEVDGR---VAKF 57 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK-LRGARWIAVGRLDVNTCGLLLFTT 121 ++QI ++ KP+G +C+ N+ TVF + L+ VGRLD + GLL+ T Sbjct: 58 SKQIYIMMN--KPKGYVCS-NEELASLTVFSLISDDLKYRDLHTVGRLDKDAEGLLIITD 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIKFSGG 177 DGE +R++ P + +E+EY VR+ +VD+ KL + G+ L+DG PA + I Sbjct: 115 DGEYTHRVISPKKRIEKEYLVRLEKEVDEEKLNEFENGIILDDGYKTLPAKYTIID---- 170 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGW 229 + + + EG+ +V+R++EA+G +V L R+R G + L + L G + Sbjct: 171 ---STTVKLCIYEGKYHQVKRMFEAIGNKVVDLKRLRIGGLNLDQSLKPGEY 219 >UniRef50_B2UMD6 Pseudouridine synthase n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UMD6_AKKM8 Length = 467 Score = 106 bits (265), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 26/239 (10%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKI------RIDGHLI 57 ++ K LA G SRR + +I GRV V+GK+ TPG+++ ++DG + Sbjct: 15 RINKFLASCGIDSRRVADRLIGEGRVEVNGKVID-------TPGMRVTEKDFVKVDGRHM 67 Query: 58 SVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLP-KLRGARWIAVGRLDVNTCGL 116 + E V+ KP G +C+R TV+D LP +LR + VGRLD ++ GL Sbjct: 68 TPMEEV-----VVLLNKPRGYVCSREAQGAIGTVYDLLPPRLRHLNY--VGRLDADSEGL 120 Query: 117 LLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSG 176 L+ T GEL L HP+ +E+EY V V D++ L RGV++ +G A K + + Sbjct: 121 LIMTNKGELTQVLSHPTGGIEKEYWVTVDQNFDNSVLMQFLRGVRIPEGNAKAKYVCRAS 180 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLA 235 + + L +G R+VR++++ +G++V +L+RVR G + L GGW LD A Sbjct: 181 A----RRACIVLEQGLKRQVRQMFQCLGLRVRKLVRVRIGSL-WGGDLEPGGWKFLDDA 234 >UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A5ZYR1_9FIRM Length = 315 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 78/241 (32%), Positives = 127/241 (52%), Gaps = 13/241 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ K L+ AG SRRE + + +AGRV+V GK G+R+ ++ +DG V+ Sbjct: 14 RINKYLSAAGVCSRREADQLTDAGRVTVAGKEIGTGERIPADA--EVFLDGR--PVKAET 69 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 Q+ +L +YKP G +C+ TV + L R VGRLD ++ GLLL T G Sbjct: 70 RQV--LLLFYKPRGIVCSTKKQRQETTVTEFLDY--PVRVYPVGRLDKDSEGLLLLTNQG 125 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 +L NR+M E+EY V V ++ + +R +S GV + T+ +G ++ Sbjct: 126 DLVNRIMRAGNYHEKEYEVTVDKKITETFIRKMSSGVPILGTVTRPCTVYKTG----DKS 181 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 +++ LT+G NR++RR+ E +G V L R+R ++ L GL G + E+ + L EL Sbjct: 182 FSIILTQGLNRQIRRMCEYLGYHVCTLKRIRIMNLTL-DGLKCGEYREICGDEWKKLNEL 240 Query: 244 V 244 + Sbjct: 241 I 241 >UniRef50_UPI00016B2405 pseudouridine synthase n=6 Tax=candidate division TM7 RepID=UPI00016B2405 Length = 237 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 20/224 (8%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+L K LA SRR+ +++I +V ++ + A+LG R+ + I I+ H++ R S Sbjct: 15 ERLNKFLAFQLGVSRRQADNLIAKQKVYINNQPAQLGARIGESD--TITINNHIVGGRSS 72 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 L KP +C+R PT++ LP + VGRLD N+ GLLL T D Sbjct: 73 YT----YLMLNKPINYVCSRKQQGKTPTIYSLLPD-KFHNLKPVGRLDANSSGLLLLTND 127 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSR------GVQLEDGPAAFKTIKFSG 176 G+ A R+ HP + ++Y V + D +L L + G+QL DG + + S Sbjct: 128 GDFAFRMTHPKFKKNKQYNVTL-----DKELAPLHQQMIADFGIQLNDGLSKLGLSRQSN 182 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 + N W VT++EGRNR++RR + A+G V +L R +G L Sbjct: 183 QDRHN-WI-VTMSEGRNRQIRRTFAALGYTVIKLHRTHFGTYKL 224 >UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A4J9G8_DESRM Length = 249 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 81/251 (32%), Positives = 126/251 (50%), Gaps = 29/251 (11%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKI-------RIDGHL 56 +L ++L G G+R+EI+ +I+A +V V+G++A + PGL I + G + Sbjct: 8 RLDRLLNHMGLGTRKEIKKLIKAKQVMVNGELA-------MDPGLHIFPQRDHIEVQGEV 60 Query: 57 ISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL-PKLRGARWIAVGRLDVNTCG 115 I RE L KP+ L D + V D L P VGRLD +T G Sbjct: 61 IEYREYI-----YLMLNKPQDVLSATEDASDK-VVIDLLDPTYHSFNPFPVGRLDKDTEG 114 Query: 116 LLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKT 171 LLL T +G+LA++L+ P + V + Y V G V + + +RGV+L+DG P K Sbjct: 115 LLLLTNNGKLAHQLLSPKKHVPKTYYALVQGLVTEEDVAAFARGVELDDGYRTLPGQLKI 174 Query: 172 IKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTE 231 I+ + I +T+ EG+ +V+R++EAVG +V L R+ G + L L G + E Sbjct: 175 IRSAPQSEI----ELTIYEGKYHQVKRMFEAVGKRVIYLKRLSMGPLVLDNNLKPGEYRE 230 Query: 232 LDLAQTNYLRE 242 L + L+E Sbjct: 231 LTDEEIALLQE 241 >UniRef50_B3L0G1 Pseudouridine synthetase, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L0G1_PLAKH Length = 328 Score = 105 bits (263), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 126/260 (48%), Gaps = 32/260 (12%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRES 62 +L K+++ SRR+ + I+ G V ++ K+ K G ++V+ KI+I G L+++ + Sbjct: 57 RLNKIISMEKKISRRKSDEFIKDGNVKLNNKVVKNPGTHIDVSKD-KIKISGKLVNIVRT 115 Query: 63 AEQICRV-------LAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNT 113 + I R +KP+G LCT ND + R +++ P+ + R ++VGRLD NT Sbjct: 116 QKMINRNDNNFYKWFVLHKPKGFLCTSNDEKDRASIYSLFPQDIMDNYRLVSVGRLDRNT 175 Query: 114 CGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-------- 165 G+LL T + N+L HP + R Y V + G L+ L+ G+ L+D Sbjct: 176 SGVLLLTNEYAWVNKLTHPKYQRIRTYRVHIEGPAQMKVLKQLATGIYLQDDNRGKENKK 235 Query: 166 --------PAAF-----KTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIR 212 PA +TIK N+++ EGRNR++R+++E + V ++ R Sbjct: 236 IVKKKRTQPAFIEILREETIKVKDQVKKVSVLNISVREGRNRQIRKMFEQINQPVIKIKR 295 Query: 213 VRYGDIPLPKGLPRGGWTEL 232 + +I L + EL Sbjct: 296 TAFENITLKDVFFPKQYREL 315 >UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A n=134 Tax=Gammaproteobacteria RepID=RSUA_YERPE Length = 235 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 121/231 (52%), Gaps = 12/231 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K L++ SR + + A RV++DG++ K G +++TP +R DG+ + Sbjct: 2 RLDKFLSQQLGVSRALVARELRAKRVTIDGEVVKSG-AIKLTPEQDVRFDGNPL------ 54 Query: 64 EQIC--RVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 +Q+ R KP+G +C+ DP+ PTV L + + A GRLD++T GL+L T Sbjct: 55 QQMVGPRYFMLNKPQGYVCSTEDPD-HPTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTD 113 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+ ++R+ P E+ Y V + + D + + GVQL + + K + E Sbjct: 114 DGQWSHRVTSPRHHCEKTYLVTLEHPLSDDTAQQFADGVQLYNEKSLTKPAQLDVIEP-- 171 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 Q +T++EGR +V+R++ AVG +V L R R GDI L L G + L Sbjct: 172 QRVRLTISEGRYHQVKRMFAAVGNRVIELHRERIGDITLDDDLAPGEYRPL 222 >UniRef50_Q30U38 Pseudouridine synthase n=12 Tax=Epsilonproteobacteria RepID=Q30U38_SULDN Length = 312 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 118/239 (49%), Gaps = 24/239 (10%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKI-RIDGHLISVRES 62 +L K +A SRRE + I+ G V V+G+I ++ G+ + + G ++ R+ Sbjct: 2 RLNKYIAHHSSYSRREADKAIQDGYVRVNGEIQD-NPATDIYEGVDVVYVSGKPVTPRDK 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 V+ Y KP+GEL T++DP+ R T++D LPK ++ VGRLD + GLLL T Sbjct: 61 ----YTVIVYNKPKGELVTKSDPKERKTIYDTLPK-EYKHYVPVGRLDYASEGLLLLTDA 115 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAA-------------- 168 ++A+ LM + +ER Y +++ G+V + G+ L+D A Sbjct: 116 SKVASALMESN--LERIYKIKIKGEVTSEMEAAMLNGMMLDDATAGGHSHSKVTSMEFKP 173 Query: 169 FKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRG 227 F K E V L+EG+NRE+RR + G + L RV + +I L LP G Sbjct: 174 FIGYKIQKNEPNYSILKVALSEGKNRELRRFFAHFGTDIVDLKRVSFAEIEL-NNLPTG 231 >UniRef50_D2MQD6 Pseudouridylate synthase n=1 Tax=Bulleidia extructa W1219 RepID=D2MQD6_9FIRM Length = 231 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 78/246 (31%), Positives = 129/246 (52%), Gaps = 24/246 (9%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLK-IRIDGHLISVRES 62 +L +VLA A GSR +++++++ GRVSV+GKIA L + V P IRID ++ + Sbjct: 2 RLDRVLANASVGSRTQVKNMVKNGRVSVNGKIA-LASSMMVDPNQDVIRIDDEILQYAKY 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGR--PTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + L YKP G + EGR PTV + +P +G GRLD +T GLLL T Sbjct: 61 -----QYLMLYKPAGYISA---TEGRYDPTVLELVPNYKG--LFPCGRLDKDTEGLLLMT 110 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG LA+ L+ P + VE+EY V + + + RG++ +K I + G + Sbjct: 111 NDGRLAHNLLSPKKHVEKEYYVEHQLPLSQEDVLCIERGIR-------YKNITYKGAKLK 163 Query: 181 ---NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 + + L EG+ E++ ++ A+ +V+ L R+R ++ L + L +G + L + Sbjct: 164 ILDDLQCTIILQEGKYHEIKNIFLAIDNKVTYLKRIRMKNLILDETLKKGEYRPLSEEEI 223 Query: 238 NYLREL 243 L++L Sbjct: 224 GDLKQL 229 >UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales RepID=C6J9Y4_9FIRM Length = 323 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 130/247 (52%), Gaps = 15/247 (6%) Query: 1 MSEKLQ--KVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLIS 58 M EK++ K L+ AG SRRE + +IE GR++V+GK A+ G +V L+ I I Sbjct: 10 MDEKIRINKYLSEAGICSRREADRMIEEGRITVNGKKAESGQKV----SLEDEICADNIP 65 Query: 59 VRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 V ++ +++ +L + KP G +C+ TV D L R VGRLD + GLLL Sbjct: 66 VHKNEKKV--LLLFNKPRGIVCSTKQQFDETTVTDYLDY--PLRVYPVGRLDKESQGLLL 121 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T +G+L N++M E+EY V V VD +R +S+GV + D + +G Sbjct: 122 LTNEGDLVNKIMRAGNYHEKEYFVTVNKPVDREFVRRMSKGVPVLDTVTRPCRVVQTG-- 179 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 + + LT+G NR++RR+ +G +V +L R+R ++ L G+ G + E+ + Sbjct: 180 --ECSFRIILTQGLNRQIRRMCRYLGYEVQKLKRIRIMNLTLD-GIREGEYREITAQEWE 236 Query: 239 YLRELVE 245 L L+E Sbjct: 237 ELNHLLE 243 >UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A9KPL1_CLOPH Length = 477 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 71/247 (28%), Positives = 136/247 (55%), Gaps = 20/247 (8%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ K L+ +G SRRE ++ I G V++DG++A +G +V PG K+ + +S Sbjct: 20 RINKYLSESGICSRREADTRIAKGEVTIDGEVAVMGSKV--LPGQKVVLGKKEVS----R 73 Query: 64 EQICRVLAYYKPEGELCT--RNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 E+ ++A++KP+G +CT + +P+ + D + R +GRLD ++ GL+ T Sbjct: 74 EEKMVLIAFHKPKGIVCTTEKREPD---NIIDYIK--YSQRIYPIGRLDKDSEGLIFLTN 128 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 +G++ N+++ E+EY V V + A L+ ++ GV + D T+ E I+ Sbjct: 129 NGDIVNKILRAGNHHEKEYIVTVNKPITAAFLKGMAGGVPILDTVTKPCTL-----EAID 183 Query: 182 Q-WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + + LT+G NR++RR+ E +V++L+R+R ++ L + L GG+ L + + Sbjct: 184 KVTFRIILTQGLNRQIRRMCEHFDYKVTKLVRIRIMNVNLGR-LKVGGYRNLTDKELEGI 242 Query: 241 RELVELP 247 +E +EL Sbjct: 243 KEQIELS 249 >UniRef50_B0B8U9 Pseudouridine synthase n=10 Tax=Chlamydiales RepID=B0B8U9_CHLT2 Length = 241 Score = 103 bits (258), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 116/239 (48%), Gaps = 30/239 (12%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K LA AG SRR+ + II AG V+V+G++A G + +D SV Sbjct: 5 RLNKFLASAGVASRRKCDEIIFAGSVTVNGRVA---------TGPFVTVDEEFDSVEVGG 55 Query: 64 EQICR----VLAYYKPEGELCT--RNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLL 117 ++I +KP G LC+ R P G V D L R VGRLD T GL+ Sbjct: 56 QRIGAEKKVYFMVHKPLGYLCSSERKFP-GSKLVIDLLSHCP-YRLFTVGRLDKETSGLI 113 Query: 118 LFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIK 173 L T DGE ANR++HPS + +EY ++V V L L G + DG P + K ++ Sbjct: 114 LVTNDGEFANRVIHPSFGITKEYLLKVSRDVTARDLETLMAGTVI-DGKVVRPVSVKKVR 172 Query: 174 FSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 + + EG+ E+R EA G+Q+ L R+R G + L GLP G + EL Sbjct: 173 -------RGTIKIIVNEGKKHEIRLFAEAAGLQLLELKRIRIGSLVL-GGLPYGKYREL 223 >UniRef50_C0QV84 Pseudouridine synthase n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0QV84_BRAHW Length = 359 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 69/217 (31%), Positives = 115/217 (52%), Gaps = 15/217 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L KV+ +G SRR E I +GRV V+ ++ + P +++ D + RE Sbjct: 11 RLVKVILESGFASRRNCEKAIMSGRVRVNNQVI-------LDPAYRVKEDDSVSIDRELI 63 Query: 64 E-QICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + Q R +A YKP G + T GR + + ++ R GRLD + G+++ T D Sbjct: 64 KRQTKRYMALYKPIGVVSTTKYLPGRRIITEFFKGIK-ERLFYAGRLDSESRGIMIITND 122 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED---GPAAFKTIKFSGGEG 179 GE AN + HPS E+ + Y V V G++D L + S+G+ +++ P FK + S G Sbjct: 123 GEFANIITHPSYEILKVYDVTVNGKIDSEALLNASKGITIKNVSYSPFKFKIL--SKGR- 179 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYG 216 I +T+ EG+NRE+R++++ +G +V L R+ G Sbjct: 180 IQSKIRLTINEGKNREIRKIFDHLGYKVIDLERISVG 216 >UniRef50_C1QDI4 Pseudouridine synthase n=1 Tax=Brachyspira murdochii DSM 12563 RepID=C1QDI4_9SPIR Length = 381 Score = 103 bits (258), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 70/216 (32%), Positives = 113/216 (52%), Gaps = 13/216 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L KV+ +G SRR E I +GR+ V+ ++ L V + ID LI Sbjct: 11 RLVKVILESGFASRRNCEKAIMSGRIRVNNEVI-LDPAYRVKESDSVSIDRKLIE----- 64 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 Q R +A YKP G + T GR + + ++ R GRLD + G+++ T DG Sbjct: 65 RQRKRYMALYKPLGVVSTTKYLPGRRIITEFFKGIK-ERLFYAGRLDSESRGIMIITNDG 123 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED---GPAAFKTIKFSGGEGI 180 E AN + HPS E+ + Y V V G++D KL + S+G+ +++ P FK + S G + Sbjct: 124 EFANIITHPSYEILKVYDVTVNGKIDSEKLYEASKGITIKNITYSPFKFKIL--SKGR-V 180 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYG 216 +T+ EG+NRE+R++++ +G +V L R+ G Sbjct: 181 QSKIRLTINEGKNREIRKIFDYLGYKVIDLERISVG 216 >UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P160_ERYRH Length = 262 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 70/238 (29%), Positives = 128/238 (53%), Gaps = 14/238 (5%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 S +L K ++ +G+ SRR+ + I G V++DG A +G +V PG ++ ++G+ +++ + Sbjct: 25 SLRLNKYISDSGYCSRRQADRFIAEGVVAIDGVTATVGQ--QVLPGQRVTVEGNHVTIDD 82 Query: 62 SAEQICRVLAYYKPEGELCTRNDP-EGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 I A KP G CT + EG + F PK+ +GRLD ++ GL+L T Sbjct: 83 EKVYI----ALNKPRGITCTTDGAIEGNISDFMNYPKM----IFPIGRLDKDSSGLILLT 134 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAA-FKTIKFSGGEG 179 DG++ N+++ ++EY V V +D+ + +S+GV++ + + S E Sbjct: 135 NDGDIVNKILREEYGHDKEYIVSVNKTIDEDFITKMSKGVEIYNQQTHRMQVTNPSDVEQ 194 Query: 180 IN-QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 + + + + L +G NR++RR+ +A+G +V+ L RVR +I L L G W L + + Sbjct: 195 VAPKTFRIVLNQGLNRQIRRMTKALGFKVTTLNRVRIMNINLGD-LKVGEWRYLSVHE 251 >UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SBU8_LEPBA Length = 243 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 117/248 (47%), Gaps = 24/248 (9%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+L KVL G G+R +++ I G V V+G + K PG KI + ++ E+ Sbjct: 4 ERLDKVLGNYGFGTRSDVKKEIYQGNVKVNGLVVK-------DPGYKITLTDIVVYYDET 56 Query: 63 AEQICRVLAYY----KPEGELCTRNDPEGRPTVFDRLP-KLRGARWIAVGRLDVNTCGLL 117 + R YY K + DP + TV D L + R +GRLD T GLL Sbjct: 57 ---LNRKEFYYFMMNKAPDCITATEDPREK-TVMDYLSERHRNMNLFPIGRLDKETEGLL 112 Query: 118 LFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIK 173 LFTTDG LA+ P VE+EY + V + G+ L+DG PA Sbjct: 113 LFTTDGTLAHYYTSPKHFVEKEYYAEISAPVTAFDISQFESGITLDDGYKTLPARLAIPD 172 Query: 174 FSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELD 233 S W L EG+ R++RR+++++G +V L RV+ G++ L + L G + EL Sbjct: 173 PSNPHIATVW----LREGKYRQIRRMFQSLGKEVQYLKRVKMGNLELDRDLEVGSYRELT 228 Query: 234 LAQTNYLR 241 A+ L+ Sbjct: 229 EAEEKILK 236 >UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ55_9FIRM Length = 250 Score = 103 bits (257), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 122/233 (52%), Gaps = 22/233 (9%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ K +A+ G SRR+ + +I+ GRV+V G I L V V I IDG I +++ Sbjct: 2 RINKYIAKCGICSRRKADELIKEGRVTVGG-IPLLECGVNVDEDAVIAIDGRPIEIQKKT 60 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 I A KP G +CT +D GR TV+D L + R +GRLD ++ GL+L T DG Sbjct: 61 VYI----AMNKPCGYVCTVSDELGRRTVYDLLTDI-DERLFTIGRLDKDSEGLILLTNDG 115 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGV-------QLEDGPAAFKTIKFS- 175 +LA +L+ P R++E+ Y V V G ++ LS G+ Q + +K+ Sbjct: 116 DLAQKLLSPKRKIEKNYEVVVRGVPGANDIKKLSGGITIDVEISQTKQNKPVKSIVKYHT 175 Query: 176 --------GGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 G + + ++ + EG+ R++R++++ +G +V +L RV++ I L Sbjct: 176 KPAKIFEIGQKQGDMKLSMIIKEGKKRQIRKMFDVIGHEVIKLKRVKFAGIEL 228 >UniRef50_Q9ZJG0 Uncharacterized RNA pseudouridine synthase jhp_1352 n=37 Tax=Epsilonproteobacteria RepID=YE59_HELPJ Length = 262 Score = 103 bits (256), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 79/258 (30%), Positives = 128/258 (49%), Gaps = 22/258 (8%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 S ++ + LA SRRE E ++ GRV ++ + AKL V+ K+ +D LI Sbjct: 4 FSLRINQFLAHYTKHSRREAEKLVLEGRVKINHEHAKLASVVKEND--KVFLDKRLIKPL 61 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 ++ + VL Y+KP+GEL ++ DP R +++ L K + A + VGRLD + G+LL + Sbjct: 62 KNKK--FSVLVYHKPKGELVSKADPLKRHVIYESLEK-KYAHFAPVGRLDFASEGVLLLS 118 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGP------AAFKTIKF 174 + + LMH + +E+EY V++ G V + G++LE+ K+++F Sbjct: 119 DSKAVVSALMHAN--LEKEYLVKIQGFVTREMENAMQEGLKLENATKGAHQKTPIKSMEF 176 Query: 175 SGGEGINQWYN--------VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPR 226 + G N V + EG+NRE+RR + V L RVRYG + L LP Sbjct: 177 APFIGYEIIKNHAKYSKLRVIINEGKNRELRRFFAFFNAGVLDLRRVRYGFVNL-NALPV 235 Query: 227 GGWTELDLAQTNYLRELV 244 G L+ + N L + Sbjct: 236 GKARFLNRQEYNELHAFM 253 >UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae RepID=B3QY10_CHLT3 Length = 297 Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 76/249 (30%), Positives = 136/249 (54%), Gaps = 20/249 (8%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A G SRR+ + +IE G V V+GK+ +LG +V+ ++ ++G + E+ Sbjct: 44 RLNKFIALCGEASRRKADEMIEQGEVMVNGKVVMELGYKVDRRAD-EVVVNGK--KLHEN 100 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 ++I +L KP+ + T +D + R TV + L L+ R VGRLD +T G+LL T D Sbjct: 101 TQKIYILLN--KPKDVVTTSSDEKSRKTVVE-LVGLKD-RVFPVGRLDRDTTGVLLLTND 156 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED-----GPAAFKTIKFSGG 177 G+L RL HP+ V+++Y + ++ L+++ +G +L+D P + + Sbjct: 157 GDLTYRLTHPTFGVQKQYVATLDKKITSVDLQNIKKGFRLKDTGEKVSPCNARIL----D 212 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 +G W V + EG+N ++ R++ + G V +L+RV YG + + + RG W L + Sbjct: 213 DGYTIW--VAIHEGKNHQIHRMFWSFGYNVKKLVRVAYGGLEVG-TMRRGEWRFLTQLEV 269 Query: 238 NYLRELVEL 246 + L + V+L Sbjct: 270 SKLYKQVQL 278 >UniRef50_C7RHU0 Pseudouridine synthase n=3 Tax=Anaerococcus RepID=C7RHU0_ANAPD Length = 233 Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 66/240 (27%), Positives = 128/240 (53%), Gaps = 12/240 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A +G+ SRR+ + +++ G+V V+G+ +LG +++ + IDG ++ + E Sbjct: 2 RINKYIASSGYTSRRKADDLVKKGKVKVNGETTHELG--LDIKDSDVVEIDGKVLEIEEK 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + YKP G + + DP + D L KL R+ A GRLD ++ GLL+ T D Sbjct: 60 I-----YIKLYKPRGYITSNFDPYNDRDLND-LVKL-DQRFFAAGRLDKDSEGLLIITND 112 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G N+++HPS+++++ Y VRV ++ + + G+ + D + + + ++ Sbjct: 113 GIFTNQIIHPSKKLDKTYIVRVSRLLNKEECQQFESGIDIGDSEMTSDS-RIELIDKTSK 171 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 Y VT+ +G NR++RR++ +V L R+ G I L G+ D A+ +++R+ Sbjct: 172 TYKVTIHQGYNRQIRRMFAYFSSEVKMLKRISIGPIKLD-GMKPYEKRNFDQAEMDFVRK 230 >UniRef50_Q688C2 Pseudouridine synthase n=1 Tax=Mycoplasma mobile RepID=Q688C2_MYCMO Length = 235 Score = 103 bits (256), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 70/243 (28%), Positives = 124/243 (51%), Gaps = 15/243 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++QK++++AG SRR E +I RV ++G IAK+GD+ + I +D +IS E Sbjct: 5 RIQKLISQAGISSRRAAEDLILKKRVKINGVIAKIGDKASLEDV--ILVDEKVISKEEKV 62 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + KP+ + T D R + D + + + + VGRLD +T G+++ T DG Sbjct: 63 YYLLN-----KPKNVVTTLKDNFNRSIITDFIDE-KKYKIFPVGRLDYDTTGIIILTNDG 116 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTI-KFSGGEGINQ 182 E AN+L+HP E+ R Y V + ++ +++ L+ + +F+ + K S N Sbjct: 117 ETANKLLHPKYEIPRIYEVIIDKELSLEEIKYLNSQEVFLNSKKSFQEVSKIS-----NY 171 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 Y + L +G +++L+E VG +V L R Y L + L G + +L+ + + L Sbjct: 172 KYKIKLHQGSYHHIKKLFEIVGKKVKDLNRTEYAFFNL-ENLSIGNYRKLNKHEIDRLLN 230 Query: 243 LVE 245 V+ Sbjct: 231 FVK 233 >UniRef50_B8ET33 Pseudouridine synthase n=29 Tax=Proteobacteria RepID=B8ET33_METSB Length = 255 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/243 (32%), Positives = 119/243 (48%), Gaps = 30/243 (12%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGD---RVEVTPGL--KIRIDGHLIS 58 +L ++LA G+G+R +++++ AGR+ +DG A L D RV TP ++ I+G + Sbjct: 12 RLDRLLANLGYGTRTQMQAMAHAGRIKLDG--AALRDPALRVAATPEFCARLSINGEALD 69 Query: 59 VRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLP---KLRGARWIAVGRLDVNTCG 115 V+A KP G C+R E P VFD LP +LR VGRLD +T G Sbjct: 70 PPPGM-----VIALNKPRGVTCSRK--EAGPLVFDLLPPRFRLREPALSTVGRLDKDTSG 122 Query: 116 LLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG------PAAF 169 LLL T DG L +RL+ P + + Y ++ + + + G + D PA Sbjct: 123 LLLITDDGALLHRLISPKHNIAKRYCAKLARPLRGDEAEIFASGEMMLDDEAKPLLPAVL 182 Query: 170 KTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGW 229 + + + E V++TEGR ++RR++ A G V L R+ GD LP L G + Sbjct: 183 RVLSPTEAE-------VSVTEGRYHQIRRMFAATGNHVLELHRMSIGDFALPLTLAPGDF 235 Query: 230 TEL 232 L Sbjct: 236 LLL 238 >UniRef50_A9NGL0 rRNA pseudouridylate synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGL0_ACHLI Length = 238 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/246 (29%), Positives = 129/246 (52%), Gaps = 20/246 (8%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSV-DGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 E+L KV+A+AG SRR+ E++I G+V V D I LG +V +P I ++G + V+E Sbjct: 2 ERLSKVIAQAGCASRRKAENLITEGKVKVNDEVINVLGYKV--SPKDIITVEGKPL-VKE 58 Query: 62 SAEQICRVLAYY---KPEGELCTRNDPEGRPTVFDRLPKL-RGARWIAVGRLDVNTCGLL 117 L YY KP G L T D R + D + K + R + +L+ +T GLL Sbjct: 59 P-------LVYYLLNKPTGYLSTTADIHKRRNILDLILKEDQNVRLFPIHKLEYDTSGLL 111 Query: 118 LFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED---GPAAFKTIKF 174 L T DGEL +L S +++EY +R G + ++R++ RG+++E+ P ++ Sbjct: 112 LVTNDGELTKKLTSQSESIQKEYVIRTKGIMIKERIREIKRGIKVENKIIKPVDIAIVEL 171 Query: 175 SGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDL 234 + + +T +E++ +++ +G +V + R+R+ + L +G+ RG + +L Sbjct: 172 DKAHQ-STLVKMIITNESAKELKTMFKQLGHEVKNMTRIRFDSLTL-EGVNRGSYRKLKS 229 Query: 235 AQTNYL 240 + YL Sbjct: 230 HEVKYL 235 >UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D966_9BACT Length = 237 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 120/229 (52%), Gaps = 18/229 (7%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L + LA AG GSRR +E +I +G+V ++G++ +V P +++ L+ Sbjct: 2 RLNRFLASAGLGSRRGVEELITSGQVRINGQVVT-DLSTQVGPTDAVKVGSRLLR----T 56 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARW---IAVGRLDVNTCGLLLFT 120 EQ VL KP G +CT +D R T+FD LP A W VGRLD ++ GLLL T Sbjct: 57 EQKITVL-LNKPAGYVCTASDERDRKTIFDLLP----ANWPRVYHVGRLDKDSEGLLLVT 111 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG+L+ L HP ++E+EY V + + L +G + G A + ++ + Sbjct: 112 NDGDLSLALTHPRYKIEKEYEVLLDKPFNPQDREKLLKGFHIIGGRAKAERVEILNPTHL 171 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGW 229 ++TLT+G R++R + +G +V RL R+R G + + + P G W Sbjct: 172 ----SLTLTQGIKRQIRLMLYDLGYEVERLARIRLGPLKIGEMRP-GEW 215 >UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organisms RepID=Q2W4E4_MAGSA Length = 247 Score = 102 bits (255), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 124/240 (51%), Gaps = 22/240 (9%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSV-DGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L +++A G+GS+R+++++I+AGRV++ DG + G + IR+DG + Sbjct: 16 RLIRLIANLGYGSQRDVKAMIKAGRVTLADGTVLDDGTKAAHD---DIRVDGEPLDPPPG 72 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK---LRGARWIAVGRLDVNTCGLLLF 119 VL +KPEG C+ +DP GR V++ LP+ R VGRLD ++ GLLL Sbjct: 73 L-----VLMLHKPEGYTCSTSDP-GR-IVYELLPERFMHRNPIVAPVGRLDRDSTGLLLL 125 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL---EDGPAAFKTIKFSG 176 T DG LA+R+ P R V + Y V + + + + G + E P A + SG Sbjct: 126 TDDGPLAHRITSPKRHVPKTYEVTLARPLSGEEGAVFASGTLMLRSESTPLAPAELVVSG 185 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 Q +T+TEGR +V+R++ AVG V RL R G + L L G W L A+ Sbjct: 186 ----PQTARITITEGRYHQVKRMFAAVGNHVERLHRAAIGGLDL-GDLAEGQWRPLSPAE 240 >UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUC8_9FIRM Length = 243 Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 13/234 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLK-IRIDGHLISVRES 62 +++K LA G GSR++I+ ++ V+++ ++ G +VTPG + + G L+ + Sbjct: 2 RIEKYLADTGWGSRKDIKQLLAQKIVTINDQVCSKGG-TQVTPGSDCVAVGGQLVPYQRY 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK-LRGARWIAVGRLDVNTCGLLLFTT 121 + KPEG L D + TV D L + + VGRLD++T GLLL T Sbjct: 61 HYYLLN-----KPEGILSATEDRHHQ-TVIDWLGEGYQHLDLFPVGRLDIDTTGLLLLTN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG---PAAFKTIKFSGGE 178 +G+LA++L+ P ++V++ Y + G VD A + G+ L D PA + + Sbjct: 115 NGQLAHQLLSPKKKVDKTYTATIRGLVDQADIAAFEAGLDLGDFTSLPAELTVLSQDVDQ 174 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 G +Q V + EG+ +V+R+++AVG +V L R+ G + L L G W L Sbjct: 175 GTSQ-IQVIIQEGKFHQVKRMFQAVGKEVLSLHRLAMGPLRLESDLAHGQWRSL 227 >UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteraceae RepID=A8ZRV1_DESOH Length = 241 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 121/233 (51%), Gaps = 20/233 (8%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK L+ AG SRR E I GRV+V+G++ +LG +V+ + DGH +++ ES Sbjct: 11 RLQKFLSGAGVCSRRRAEVYIAEGRVAVNGQVVTELGTKVDPESD-DVMFDGHRVTLAES 69 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 I A KP G + T + TV + + R VGRLD +CGLLL T+D Sbjct: 70 HVYI----ALNKPPGYV-TSCLQKQETTVMELVAV--DQRVFPVGRLDKPSCGLLLMTSD 122 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL---EDGPAAFKTIKFSGGEG 179 G L RL HPS + E+EY V V DA L + RG+ + + PA K + Sbjct: 123 GGLHQRLSHPSFDHEKEYDVACDRPVSDADLDAMRRGMVITGRKTRPAKVKRLS------ 176 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 ++ + + L EGRNR++RR+ E +G +V L R+R I L L G W L Sbjct: 177 -DRRFLIILQEGRNRQIRRMAEMLGNRVVLLRRIRIAHIHL-GDLAEGRWRYL 227 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B... 400 e-110 UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B... 344 2e-93 UniRef50_Q87NB7 Ribosomal large subunit pseudouridine synthase B... 328 1e-88 UniRef50_B6EJI1 Pseudouridine synthase n=8 Tax=Gammaproteobacter... 322 1e-86 UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter Rep... 315 2e-84 UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacter... 314 2e-84 UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 313 4e-84 UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B... 312 1e-83 UniRef50_A5WGV6 Pseudouridine synthase n=7 Tax=Moraxellaceae Rep... 310 4e-83 UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadale... 309 8e-83 UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ... 305 1e-81 UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72... 298 2e-79 UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 297 3e-79 UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria R... 297 3e-79 UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria R... 296 5e-79 UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 295 1e-78 UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria Re... 294 2e-78 UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyr... 294 2e-78 UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria Re... 293 5e-78 UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B... 293 5e-78 UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter... 292 1e-77 UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formi... 289 6e-77 UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q2... 289 8e-77 UniRef50_Q1H048 Pseudouridine synthase n=4 Tax=Betaproteobacteri... 288 2e-76 UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3... 286 6e-76 UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium r... 286 7e-76 UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 286 8e-76 UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 285 8e-76 UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium c... 285 9e-76 UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 285 9e-76 UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 285 9e-76 UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=... 285 1e-75 UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 285 2e-75 UniRef50_B9ZS86 Pseudouridine synthase n=2 Tax=Chromatiales RepI... 284 2e-75 UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 282 9e-75 UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae Re... 281 2e-74 UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uen... 281 2e-74 UniRef50_Q5F8V3 Pseudouridine synthase n=21 Tax=Proteobacteria R... 280 5e-74 UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 280 5e-74 UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibac... 279 6e-74 UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia ... 279 8e-74 UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales Rep... 278 1e-73 UniRef50_B4RM91 Pseudouridine synthase n=8 Tax=Betaproteobacteri... 278 2e-73 UniRef50_D0L0G8 Pseudouridine synthase n=1 Tax=Halothiobacillus ... 278 2e-73 UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8... 277 2e-73 UniRef50_Q89AL1 Ribosomal large subunit pseudouridine synthase B... 277 3e-73 UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr03... 277 3e-73 UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine syn... 277 3e-73 UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3... 277 3e-73 UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID... 276 7e-73 UniRef50_A5CX60 Pseudouridine synthase n=1 Tax=Candidatus Vesico... 276 8e-73 UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9... 275 1e-72 UniRef50_B6BUN1 Pseudouridine synthase n=1 Tax=beta proteobacter... 275 1e-72 UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 275 2e-72 UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_14... 275 2e-72 UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 275 2e-72 UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 274 2e-72 UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1... 274 2e-72 UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales Re... 274 3e-72 UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 274 3e-72 UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 274 3e-72 UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gin... 274 3e-72 UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=... 273 5e-72 UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 273 5e-72 UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales Rep... 273 7e-72 UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomona... 272 7e-72 UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae Rep... 272 1e-71 UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter the... 272 1e-71 UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter hepari... 271 2e-71 UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organism... 271 2e-71 UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria Re... 271 2e-71 UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1... 271 2e-71 UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B... 271 2e-71 UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae... 270 3e-71 UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae... 270 3e-71 UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 270 5e-71 UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax... 269 8e-71 UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wo... 269 9e-71 UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5... 268 1e-70 UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 268 1e-70 UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 268 1e-70 UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrional... 268 2e-70 UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae... 267 3e-70 UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 267 4e-70 UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae... 267 4e-70 UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytop... 266 5e-70 UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q... 266 6e-70 UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 266 9e-70 UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta... 265 1e-69 UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula m... 264 2e-69 UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutac... 264 2e-69 UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroid... 264 3e-69 UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacte... 263 4e-69 UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alex... 263 4e-69 UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limn... 263 4e-69 UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q0... 263 5e-69 UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces uroge... 262 8e-69 UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3... 262 9e-69 UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0... 262 9e-69 UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0... 262 1e-68 UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actino... 261 1e-68 UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes Rep... 261 2e-68 UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales R... 261 2e-68 UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 260 3e-68 UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium R... 260 3e-68 UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. ... 260 4e-68 UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C... 260 4e-68 UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepI... 260 5e-68 UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae ... 260 5e-68 UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marin... 260 5e-68 UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succi... 260 6e-68 UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 260 6e-68 UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 259 6e-68 UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterinea... 259 7e-68 UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi... 259 7e-68 UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapol... 259 9e-68 UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae Re... 259 9e-68 UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium Re... 259 1e-67 UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter rube... 258 1e-67 UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2... 258 1e-67 UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales ... 258 1e-67 UniRef50_P42395 Ribosomal large subunit pseudouridine synthase B... 258 2e-67 UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium R... 257 3e-67 UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium Rep... 257 3e-67 UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vag... 257 4e-67 UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine syn... 257 4e-67 UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1... 256 5e-67 UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter ... 256 6e-67 UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=... 256 6e-67 UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A... 255 9e-67 UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6... 255 1e-66 UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria Rep... 255 1e-66 UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 255 1e-66 UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A... 255 1e-66 UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracel... 255 2e-66 UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus Rep... 254 2e-66 UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (... 254 3e-66 UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovib... 254 3e-66 UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID... 254 3e-66 UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae Rep... 254 3e-66 UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7... 253 5e-66 UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 253 5e-66 UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A... 253 5e-66 UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 253 5e-66 UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium R... 253 6e-66 UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 253 7e-66 UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 253 7e-66 UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indi... 252 9e-66 UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 251 1e-65 UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organism... 251 1e-65 UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A... 251 2e-65 UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 251 2e-65 UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 251 2e-65 UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii ... 251 2e-65 UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 251 2e-65 UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae ... 251 2e-65 UniRef50_B7L142 Pseudouridine synthase n=9 Tax=Alphaproteobacter... 251 2e-65 UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 251 3e-65 UniRef50_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris ... 250 4e-65 UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum fe... 250 5e-65 UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 250 5e-65 UniRef50_Q87BI2 Ribosomal large subunit pseudouridine synthase B... 250 5e-65 UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F... 250 5e-65 UniRef50_Q21MN5 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q2... 250 6e-65 UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B... 250 6e-65 UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine... 249 7e-65 UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=... 249 8e-65 UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 249 8e-65 UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 249 9e-65 UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi A... 249 1e-64 UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenen... 248 1e-64 UniRef50_C6AV89 Pseudouridine synthase n=17 Tax=Rhizobiaceae Rep... 248 2e-64 UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gas... 248 2e-64 UniRef50_A6EPE0 Pseudouridine synthase n=1 Tax=unidentified euba... 248 2e-64 UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 247 3e-64 UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F... 247 3e-64 UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter fl... 247 3e-64 UniRef50_C4XEA6 Pseudouridine synthase n=1 Tax=Mycoplasma fermen... 247 4e-64 UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 247 4e-64 UniRef50_A9MDW0 Pseudouridine synthase n=43 Tax=Rhizobiales RepI... 246 4e-64 UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5... 246 6e-64 UniRef50_B6R892 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. ... 245 1e-63 UniRef50_B1X5I1 Pseudouridine synthase, Rsu n=1 Tax=Paulinella c... 245 1e-63 UniRef50_Q0G3T3 Pseudouridine synthase n=4 Tax=Alphaproteobacter... 245 1e-63 UniRef50_UPI0000D52F9C putative ribosomal large subunit pseudour... 245 1e-63 UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 245 2e-63 UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin51... 245 2e-63 UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (c... 245 2e-63 UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales Rep... 244 3e-63 UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG ... 244 3e-63 UniRef50_C6XHY6 Pseudouridine synthase n=1 Tax=Candidatus Liberi... 243 4e-63 UniRef50_Q7VBH8 Pseudouridine synthase n=1 Tax=Prochlorococcus m... 243 4e-63 UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredi... 243 5e-63 UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales R... 243 6e-63 UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodi... 243 7e-63 UniRef50_Q13BM8 Pseudouridine synthase n=55 Tax=Alphaproteobacte... 243 7e-63 UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae Re... 243 7e-63 UniRef50_C1XNC4 Pseudouridine synthase n=1 Tax=Meiothermus ruber... 243 7e-63 UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium si... 243 8e-63 UniRef50_Q1RJR2 Uncharacterized RNA pseudouridine synthase RBE_0... 242 9e-63 UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteracea... 242 9e-63 UniRef50_Q1LJQ9 Pseudouridine synthase n=3 Tax=Burkholderiales R... 242 1e-62 UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 241 1e-62 UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Rumi... 241 1e-62 UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bac... 241 2e-62 UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 241 2e-62 UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus Re... 241 2e-62 UniRef50_C6XQT2 Pseudouridine synthase n=1 Tax=Hirschia baltica ... 241 2e-62 UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=... 241 3e-62 UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vaden... 241 3e-62 UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum v... 240 3e-62 UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflex... 240 3e-62 UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3... 240 3e-62 UniRef50_A5IXL5 Pseudouridine synthase n=3 Tax=Mycoplasma RepID=... 240 4e-62 UniRef50_B9JSE7 Ribosomal large subunit pseudouridine synthase B... 240 6e-62 UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 240 6e-62 UniRef50_C8WBY9 Pseudouridine synthase n=3 Tax=Zymomonas mobilis... 238 1e-61 UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organis... 238 2e-61 UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium fe... 238 2e-61 UniRef50_Q1YVK2 Pseudouridine synthase n=3 Tax=Gammaproteobacter... 237 3e-61 UniRef50_D2MQD6 Pseudouridylate synthase n=1 Tax=Bulleidia extru... 237 3e-61 UniRef50_Q14P18 Pseudouridine synthase n=2 Tax=Mollicutes RepID=... 237 3e-61 UniRef50_Q2SRP5 Ribosomal large subunit pseudouridine synthase B... 237 3e-61 UniRef50_A6DF49 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 237 3e-61 UniRef50_A9AXM1 Pseudouridine synthase n=3 Tax=Bacteria RepID=A9... 237 4e-61 UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 237 4e-61 UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacter... 236 5e-61 UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 236 5e-61 UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termit... 236 5e-61 UniRef50_Q8T866 Putative uncharacterized protein n=1 Tax=Dictyos... 236 5e-61 UniRef50_D0J9Y2 Pseudouridine synthase n=1 Tax=Blattabacterium s... 236 6e-61 UniRef50_C8P302 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 236 6e-61 UniRef50_C7RHU0 Pseudouridine synthase n=3 Tax=Anaerococcus RepI... 236 6e-61 UniRef50_Q2G8T2 Pseudouridine synthase n=5 Tax=Sphingomonadales ... 236 6e-61 UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methy... 236 7e-61 UniRef50_UPI00006CCA31 conserved hypothetical protein n=1 Tax=Te... 235 1e-60 UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus Re... 235 1e-60 UniRef50_B8ETE9 Pseudouridine synthase n=1 Tax=Methylocella silv... 235 1e-60 UniRef50_C9LMR9 Pseudouridine synthase n=1 Tax=Dialister invisus... 235 1e-60 UniRef50_A8I6C3 Pseudouridine synthase n=6 Tax=Alphaproteobacter... 235 2e-60 UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 235 2e-60 UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae ... 235 2e-60 UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacter... 235 2e-60 UniRef50_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K... 235 2e-60 UniRef50_A0M7H0 Ribosomal large subunit pseudouridine synthase F... 234 3e-60 UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni R... 234 3e-60 UniRef50_O05668 Uncharacterized RNA pseudouridine synthase ML137... 234 4e-60 UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A... 233 4e-60 UniRef50_B5ELL5 Pseudouridine synthase n=3 Tax=Acidithiobacillus... 233 4e-60 UniRef50_A8U4V7 Pseudouridine synthase n=10 Tax=Lactobacillales ... 233 4e-60 Sequences not found previously or not previously below threshold: >UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B n=117 Tax=Bacteria RepID=RLUB_ECO57 Length = 290 Score = 400 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 289/289 (100%), Positives = 289/289 (100%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR Sbjct: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT Sbjct: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI Sbjct: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL Sbjct: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNN 289 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNN Sbjct: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNN 289 >UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B n=177 Tax=Gammaproteobacteria RepID=RLUB_HAEIN Length = 357 Score = 344 bits (884), Expect = 2e-93, Method: Composition-based stats. Identities = 204/277 (73%), Positives = 240/277 (86%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 EKLQKVLARAG GSRREIE++I AGRVSV+GKIA LGDR++V G+K+RIDG +I++ + Sbjct: 76 EKLQKVLARAGQGSRREIETMIAAGRVSVEGKIATLGDRIDVHSGVKVRIDGQIINLSHT 135 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 ++ICRVL YYKPEGELCTR+DPEGR TVFDRLP+L G+RWIAVGRLD+NT GLLLFTTD Sbjct: 136 QKEICRVLMYYKPEGELCTRSDPEGRATVFDRLPRLTGSRWIAVGRLDINTSGLLLFTTD 195 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRLMHPSREVEREY+VRVFGQVDDA L L +GVQLEDG A FK IKF+GG GINQ Sbjct: 196 GELANRLMHPSREVEREYSVRVFGQVDDAMLARLRKGVQLEDGLANFKEIKFTGGVGINQ 255 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 WY+VTL EGRNREVRRLWE+ G+QVSRLIR+RYG+I L KGLPRGGW E+DL NYLRE Sbjct: 256 WYDVTLMEGRNREVRRLWESQGIQVSRLIRIRYGNIKLMKGLPRGGWEEMDLENVNYLRE 315 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVS 279 LV LP ET +K+ V++ RR K+ QIR+AVKR+S+++ Sbjct: 316 LVGLPAETETKLDVKQASRRPKSGQIRKAVKRYSEMN 352 >UniRef50_Q87NB7 Ribosomal large subunit pseudouridine synthase B n=17 Tax=Bacteria RepID=RLUB_VIBPA Length = 312 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 195/295 (66%), Positives = 234/295 (79%), Gaps = 8/295 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSEKLQKVLARAGHGSRREIES+I++GRVSV+G +AKLG+R+E +RIDGH++S + Sbjct: 1 MSEKLQKVLARAGHGSRREIESLIKSGRVSVNGVVAKLGERLE-DESSVVRIDGHIVSAK 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E ICRVLAYYKPEGELCTR+DPEGR TVFDRLPK+RG+RWI+VGRLD NT GLLLFT Sbjct: 60 VQEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFT 119 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDGELANRLMHPSR+VEREY VRVFG+V + K+R+L +GV+LEDG A F+ + ++GGEG+ Sbjct: 120 TDGELANRLMHPSRQVEREYLVRVFGEVTEQKVRNLVKGVELEDGLARFEDVVYAGGEGM 179 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N + V + EGRNREVRRLWE+ VSRL RVRYGDI L K LPRGGW ELDL + NYL Sbjct: 180 NHTFYVVINEGRNREVRRLWESQECTVSRLKRVRYGDIFLDKKLPRGGWMELDLKEVNYL 239 Query: 241 RELVELPPETSSKVAVEKD-----RRRMKANQIRRAVKRHSQVSGGRRSGGRNNN 290 RELVEL PE + + + KD R R ++ +IRRAVKRH + S GR+NN Sbjct: 240 RELVELRPEKETMLDLSKDNTSRKRERARSQKIRRAVKRHEE--RVSTSKGRSNN 292 >UniRef50_B6EJI1 Pseudouridine synthase n=8 Tax=Gammaproteobacteria RepID=B6EJI1_ALISL Length = 354 Score = 322 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 190/299 (63%), Positives = 238/299 (79%), Gaps = 13/299 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSEKLQKVLARAG GSRRE+E++I+AGRVS+DG+ AKLGDR+E +IRIDGH++SV+ Sbjct: 1 MSEKLQKVLARAGLGSRRELETMIQAGRVSIDGQKAKLGDRLE-NVDARIRIDGHVVSVK 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 ES + ICRVLAY+KPEGELCTR+DPEGR TVFDRLPK++ +RW++VGRLD NT GLLLFT Sbjct: 60 ESTDVICRVLAYHKPEGELCTRHDPEGRRTVFDRLPKIKDSRWVSVGRLDANTAGLLLFT 119 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDGELANRLMHPSR+VEREY R+FG ++D +++L GV+LEDG A F+ + ++GGEG+ Sbjct: 120 TDGELANRLMHPSRKVEREYMCRIFGDINDKMVKNLVTGVKLEDGEARFEDVMYAGGEGM 179 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N + V + EGRNREVRRLW++ GV VSRL RVRYGDI L K LPRGGW EL+L + NYL Sbjct: 180 NHTFYVVINEGRNREVRRLWDSQGVTVSRLKRVRYGDIFLEKALPRGGWMELELKEVNYL 239 Query: 241 RELVELPPETSSKVAVE---KDRRRMKANQIRRAVKRHSQ-------VSGGRRSGGRNN 289 R++VELP E S + V+ + R + K+ +IRRAVKRH + +GGRR GRNN Sbjct: 240 RDMVELPHEKESLLDVDKESRKRAKSKSQKIRRAVKRHDERTTEDRNTAGGRR--GRNN 296 >UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter RepID=D0SB72_ACIJO Length = 368 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 154/284 (54%), Positives = 199/284 (70%), Gaps = 2/284 (0%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSEKLQKVLAR G GSRR +E +I AGRVSV+G++A++G+R+E PG ++RIDG +S + Sbjct: 1 MSEKLQKVLARVGLGSRRYMEEVIAAGRVSVNGQVAQVGERIE--PGDELRIDGRKVSFQ 58 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E RVL YYKPEGE+C+RNDPE RPTVFD+LP + RW+ VGRLD+N+ GLLLFT Sbjct: 59 IEDEIRRRVLIYYKPEGEICSRNDPESRPTVFDQLPAIANDRWVMVGRLDINSTGLLLFT 118 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELANRLMHPS EVEREYAVRV G+V ++ +GV L+DGPA F++ GGEGI Sbjct: 119 NDGELANRLMHPSNEVEREYAVRVMGEVTPQIKNNMLKGVVLDDGPAKFESFSEIGGEGI 178 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+WY V + EGRNREVRR++E+ G++VSRL+R RYG + LP+ L G W ELD + L Sbjct: 179 NRWYQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMELDKNDIDNL 238 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRS 284 + VEL P + + RR + + A +R + RR Sbjct: 239 TKAVELKPRQGTGLYGMAKRRTERMQEKPMAARRGGFLRQQRRD 282 >UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacteria RepID=B2HUK5_ACIBC Length = 307 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 154/284 (54%), Positives = 199/284 (70%), Gaps = 2/284 (0%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSEKLQKVLAR G GSRR +E +I AGRVSV+G+IA++G+R+E PG ++RIDG + + Sbjct: 1 MSEKLQKVLARIGLGSRRYMEEVIAAGRVSVNGRIAQVGERIE--PGDELRIDGRKVQFQ 58 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E RVL YYKPEGE+C+RNDPE RPTVFD LP++ RW+ VGRLD+N+ GLLLFT Sbjct: 59 IEDEIRRRVLIYYKPEGEICSRNDPEKRPTVFDHLPQIANDRWVMVGRLDINSTGLLLFT 118 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELANRLMHPS E+EREYAVRV G+V +++ GV+LEDGPA F++ GGEGI Sbjct: 119 NDGELANRLMHPSNEIEREYAVRVMGEVTPQLRQNMVNGVELEDGPAKFESFSEIGGEGI 178 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+WY V + EGRNREVRR++E+ G++VSRL+R RYG + LP+ L G W ELD + L Sbjct: 179 NRWYQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMELDKTDIDNL 238 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRS 284 + VEL P + + RR + + A +R + RR Sbjct: 239 AKSVELKPRQGTGLFGMAKRRTERMTEKPMAARRGGYLRQQRRD 282 >UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=C4ZJR2_THASP Length = 379 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 144/267 (53%), Positives = 196/267 (73%), Gaps = 6/267 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKVLA+AG SRREIE + AGR+SV+G A LG ++ PG +++++G L+ +R Sbjct: 117 ERLQKVLAQAGVASRREIEEWVVAGRISVNGLPASLGQKI--GPGDRVKVNGKLVPLR-F 173 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 ++ RVL Y+KPEGE+ +R+DPEGRPTVF+RLP LR RW+AVGRLD NT GLLLFT D Sbjct: 174 TQRSPRVLIYHKPEGEIVSRDDPEGRPTVFERLPILRKGRWLAVGRLDFNTSGLLLFTND 233 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LAN+LMHP E+EREYAVR+ G++ + +++ L+ G+QLEDGPA F ++ GGEG N Sbjct: 234 GDLANKLMHPRYELEREYAVRILGELTEEQVKSLTDGIQLEDGPAKFNLLRDEGGEGANH 293 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 WY VT++EGRNREVRR++EAVG+ VSRL+RVRYG + LP L RG W E+ A+ L Sbjct: 294 WYRVTISEGRNREVRRMFEAVGLTVSRLMRVRYGSVELPARLKRGMWMEMPEAEACAL-- 351 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIR 269 LPP S+ +D+R +K ++ + Sbjct: 352 -AGLPPPQQSRQQDLRDKRPVKLHRTQ 377 >UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B n=67 Tax=Gammaproteobacteria RepID=RLUB_PSEAE Length = 386 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 155/291 (53%), Positives = 197/291 (67%), Gaps = 4/291 (1%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 EKLQKVLAR G GSRR++E I GRV+V+G +A LG RV+ I +DGHLI E+ Sbjct: 14 EKLQKVLARLGVGSRRDVEVWIAEGRVNVNGSVASLGQRVD--SHDAITVDGHLIRREEA 71 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 AE + RVL Y KPEGE+CTR+DPEGRPT+FDRLP+LR RWI VGRLD+NT GLLLFTTD Sbjct: 72 AESVRRVLIYNKPEGEVCTRDDPEGRPTIFDRLPRLRTGRWINVGRLDINTTGLLLFTTD 131 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFS-GGEGIN 181 GELANRLMHPS E++REYAVRV G+V + + L GV LEDGPA F I+ + GGEG N Sbjct: 132 GELANRLMHPSYEMDREYAVRVRGEVTEEMIERLLNGVMLEDGPAKFSDIQQAPGGEGFN 191 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 WY+ + EGRNREVRRLWE+ G+ VSRL RVR+G + L L G + E+D + + L Sbjct: 192 HWYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLTSELTMGRYREMDQREIDILS 251 Query: 242 ELVELPPETSSKVAVE-KDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 E V L P + + +++ + + R + R + GR+ R +G Sbjct: 252 EEVGLKPVALPGMTTKAREKAERQQRKQARPLARSERPEAGRKRAPRREDG 302 >UniRef50_A5WGV6 Pseudouridine synthase n=7 Tax=Moraxellaceae RepID=A5WGV6_PSYWF Length = 345 Score = 310 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 158/293 (53%), Positives = 201/293 (68%), Gaps = 5/293 (1%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +EKLQK LAR G GSRR++E +I+AGRVS++ K A +GDRVE G +IR+DG LI + Sbjct: 42 TEKLQKALARMGLGSRRQMEEVIKAGRVSINQKPASIGDRVE--QGDEIRVDGRLIKYKS 99 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 E+ RVLAYYKPEGE+C+ NDPEGR TVF+RLPKL RWI VGRLD+N+ GLLLFT Sbjct: 100 EREKRRRVLAYYKPEGEICSANDPEGRTTVFERLPKLTHDRWIMVGRLDINSTGLLLFTN 159 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGELA+RLMHPS E+ REYAVR+ G++ +R+L+ GV LEDG A F+ IK GGEG+N Sbjct: 160 DGELAHRLMHPSNEIVREYAVRILGELTPEMMRNLTDGVMLEDGLAKFEDIKQGGGEGVN 219 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +WY+V L EGRNREVRRL E+ G++VSRL+R YG + LPK L G + ELD + L Sbjct: 220 KWYHVKLKEGRNREVRRLIESQGLKVSRLLRTSYGSVDLPKELRTGRFIELDRKDIHRLI 279 Query: 242 ELVELPPETSSKV---AVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 +LV + P V A EK R K R ++ S+ S G+N + Sbjct: 280 DLVGIRPREDMGVHGKAKEKKERFQKKPMKARTIRTSSRSGRASTSTGKNTSA 332 >UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadales RepID=B3E7C4_GEOLS Length = 274 Score = 309 bits (792), Expect = 8e-83, Method: Composition-based stats. Identities = 107/283 (37%), Positives = 157/283 (55%), Gaps = 19/283 (6%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISV 59 M E+LQK+++ AG SRR E +I AGRV+V+G++ +LG + + L I +DG + Sbjct: 1 MIERLQKIISAAGITSRRAAEEMILAGRVTVNGQVVTELGSKADPAKDL-IALDGQPVKP 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 E + +KP G + + DP+GR V + + + G R VGRLD N+ GLLL Sbjct: 60 AE----TFYYVLLHKPAGYVTSLKDPQGRQLVTELVKDV-GERLFPVGRLDYNSEGLLLL 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG ANRLMHP +V++EY VRV G++D +++ L+ GV+LEDGP T++ + Sbjct: 115 TNDGAWANRLMHPRHQVDKEYHVRVRGKIDPQQIKKLADGVELEDGPTGATTVRLLKNDQ 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 N W +VT+ EGRNR+VRR+ AVG+ V RL R+RYG++ L GL G + L + Sbjct: 175 SNDWLSVTIREGRNRQVRRMCAAVGLFVVRLRRIRYGNLTLG-GLQPGEYRLLSREEAQA 233 Query: 240 LRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGR 282 L K R + A ++ + SQ G R Sbjct: 234 L-----------DAPPPVKQREQRMAAPVKSSTTPQSQTPGKR 265 >UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JIZ1_9ALTE Length = 367 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 155/290 (53%), Positives = 195/290 (67%), Gaps = 7/290 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++QK+LARAG GSRREIE ++AGR+ V+GK G + V+ +DG + V + Sbjct: 57 ERIQKLLARAGVGSRREIEGWMDAGRLLVNGKPVTPGQKATVS--DVFELDGKRLEVAAA 114 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 AE + RVL Y KPEGE+ TR DPEGRPTVFDRLP+LR RWI++GRLD+NT GL++FTTD Sbjct: 115 AEVLRRVLIYNKPEGEVTTRKDPEGRPTVFDRLPRLREHRWISIGRLDLNTTGLVMFTTD 174 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRLMHPS E++REYAVR+FG+VDDA + L GV LEDG A F I +GG G+N+ Sbjct: 175 GELANRLMHPSSEIDREYAVRIFGEVDDAMIERLRTGVTLEDGEAKFSDISAAGGTGMNR 234 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W++VTL EGRNREVRRLWE+ GV+VSRL RVRYG I LP L G W ELD + L Sbjct: 235 WFHVTLLEGRNREVRRLWESQGVRVSRLKRVRYGSIFLPSRLTVGKWEELDQKAVDLLSR 294 Query: 243 LVEL-----PPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGR 287 V L P +T + A + ++R A R+ + S G R Sbjct: 295 TVGLAKMAVPQQTPDEAAAQARQQRKAAPVTNRSNRAASSPGSKSGQGAR 344 >UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72 RepID=A1K7C2_AZOSB Length = 356 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 146/262 (55%), Positives = 187/262 (71%), Gaps = 6/262 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKVLA+AG SRREIE ++ AGR+SV+G A LG ++ PG +++++G LI +R Sbjct: 91 ERLQKVLAQAGVASRREIEELVVAGRISVNGLPASLGQKI--GPGDRVKLNGKLIPLR-F 147 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 +++ RVL Y+KPEGE+ +R+DPEGRPTVF+RLP LR RW+AVGRLD NT GLLLFT D Sbjct: 148 SQRSPRVLVYHKPEGEIVSRDDPEGRPTVFERLPLLRKGRWLAVGRLDFNTSGLLLFTND 207 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LANRLMHP E+ REYAVR+ GQ+ + + + L G+QLEDGPA F ++ +GGEG+N Sbjct: 208 GDLANRLMHPRYELTREYAVRLLGQLTEEQGQSLVDGIQLEDGPARFLSLVDAGGEGVNH 267 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 WY VTL EGRNREVRR++EAVG+ VSRL+RVRYG + LP L RG W EL A L Sbjct: 268 WYRVTLAEGRNREVRRMFEAVGLTVSRLMRVRYGPVELPARLKRGMWMELPEADACAL-- 325 Query: 243 LVELPPETSSKVAVEKDRRRMK 264 LPP A R + Sbjct: 326 -AGLPPPRVDPSARGARREKAP 346 >UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=A4SY81_POLSQ Length = 587 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 138/273 (50%), Positives = 172/273 (63%), Gaps = 7/273 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA G GSRR++E +I GRVSV+G A +G R+ P ++RI+G + R+ Sbjct: 196 TVKLHKVLADVGMGSRRDMEDLIIQGRVSVNGLPAHIGQRI--GPTDQVRINGKPVH-RK 252 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + RV+ Y+KP GE+ +++DPEGRPTVFDRLPK R RWIAVGRLD NT GLLLFTT Sbjct: 253 IQTKPPRVIMYHKPAGEIVSQSDPEGRPTVFDRLPKPRQGRWIAVGRLDFNTEGLLLFTT 312 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 GELANRLMHP VEREYAVR+ G + L G+ L+DG A F + GGEG N Sbjct: 313 SGELANRLMHPRYGVEREYAVRILGDLSQENTALLKSGITLDDGQAKFLRLAMGGGEGAN 372 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +WY+V L+EGRNREVRR++EAVG VSRLIR RYG LP L RG W E++ L Sbjct: 373 RWYHVALSEGRNREVRRMFEAVGHTVSRLIRTRYGIFLLPPRLRRGKWEEIEAGGIYNLM 432 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKR 274 + L +K R N+ RR Sbjct: 433 KSAGLK----MPQPSDKGRSPNPNNRDRRPAGE 461 >UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria RepID=Q1LLR3_RALME Length = 631 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 137/271 (50%), Positives = 180/271 (66%), Gaps = 3/271 (1%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA G GSRRE+E +I GRVSV+G A +G R+ P ++R++G LI R+ Sbjct: 234 APKLHKVLAEGGLGSRREMEELILQGRVSVNGLPAHIGQRI--LPTDQVRVNGKLIH-RK 290 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + RVL Y+KP GE+ +++DPEGRPTVFD LP+++ +W+AVGRLD NT GLL+FTT Sbjct: 291 VTTKPPRVLLYHKPSGEIVSQSDPEGRPTVFDSLPRIKNGKWVAVGRLDFNTEGLLIFTT 350 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G++ANR MHP VEREYAVR G++ +A + L G+QL+DG A F I GGEG+N Sbjct: 351 SGDIANRFMHPRYGVEREYAVRTLGELAEADRQRLLHGIQLDDGEANFLRIADGGGEGVN 410 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 QWY+V LTEGRNREVRR++EAVG+ VSRLIR RYG LP+GL RG W ELD L Sbjct: 411 QWYHVALTEGRNREVRRMFEAVGLTVSRLIRTRYGQFLLPRGLKRGRWQELDPTDVRGLM 470 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAV 272 + L + + K ++ + R Sbjct: 471 ANIGLKAPSKEAQSGGKGVTKVGGRKQREEA 501 >UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria RepID=Q140U9_BURXL Length = 633 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 141/285 (49%), Positives = 188/285 (65%), Gaps = 7/285 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA AG GSRR++E +I AGRVSV+G+ A +G R+ P ++RI+G + R+ Sbjct: 216 APKLHKVLAEAGMGSRRDMEELIVAGRVSVNGEPAHIGQRI--MPTDQVRINGKPVK-RK 272 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 A + RVL Y+KP GE+ + DPEGRP+VFD+LP ++ A+W+AVGRLD NT GLL+ TT Sbjct: 273 LASKPPRVLLYHKPTGEIVSHADPEGRPSVFDKLPPMKTAKWLAVGRLDFNTEGLLMLTT 332 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+LANR MHP VEREYAVRV G++ + + L GV+L+DGPA F I+ GGEG N Sbjct: 333 SGDLANRFMHPRYSVEREYAVRVVGELAEGMRQKLLHGVELDDGPANFLRIRDGGGEGTN 392 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 WY+V L EGRNREVRR++EA G+ VSRLIR R+G I LPKGL RG W EL+ Q L Sbjct: 393 HWYHVALAEGRNREVRRMFEAAGLMVSRLIRTRHGPISLPKGLKRGRWEELEDNQVRALM 452 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRA----VKRHSQVSGGR 282 V L T + + R + + ++ + + +S GR Sbjct: 453 ASVGLKAPTEERGSRNAAPERKQPDPMQTSMGFINREPVLMSHGR 497 >UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=A6GNL7_9BURK Length = 458 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 134/276 (48%), Positives = 189/276 (68%), Gaps = 4/276 (1%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 ++ KL KVLA +G GSRRE+E +I AGRVSV+ + A LG RV P ++R++G LI R Sbjct: 67 LAPKLHKVLADSGMGSRREMEELIVAGRVSVNAEPAHLGQRV--LPTDQVRVNGKLIQ-R 123 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 ++ + RVL Y+KP GE+ + +DP+GR TVF +LPK+ +WIAVGRLD NT GLLLFT Sbjct: 124 KNKSKPPRVLIYHKPAGEIVSMDDPQGRTTVFQKLPKISNGKWIAVGRLDFNTEGLLLFT 183 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 + GELANRLMHP EV+REYAVR+ G++ + + + L G+QLEDGPA F + +GGEG Sbjct: 184 SSGELANRLMHPRYEVQREYAVRILGELSEEQRQQLLTGIQLEDGPAKFLYVDAAGGEGA 243 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+WY V L EGRNREVRR++EA + VSRLIR R+GDI +P L RG E++ + Sbjct: 244 NRWYKVGLKEGRNREVRRMFEACNLTVSRLIRTRFGDIMMPSTLKRGRHMEMEALEAMSY 303 Query: 241 RELVELP-PETSSKVAVEKDRRRMKANQIRRAVKRH 275 + + L E++ + A+ +D++ + + +R + Sbjct: 304 MQSLGLKVDESAQEGAIRRDKKNIGSKNNKRRNGQP 339 >UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria RepID=C7I043_THIIN Length = 562 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 149/271 (54%), Positives = 186/271 (68%), Gaps = 6/271 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA++G GSRRE+E +I AGRVSV+G+ A LG R+ P +IR++G +I R Sbjct: 171 APKLHKVLAQSGVGSRREMEDLILAGRVSVNGEPAHLGQRI--LPTDQIRVNGKIIKRRL 228 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 Q RVLAY+KP GE+ + DPEGRPTVF LPKL+GA+W AVGRLD+NT GLLLFTT Sbjct: 229 RPAQ-ARVLAYHKPTGEVVSFKDPEGRPTVFQHLPKLQGAKWTAVGRLDINTEGLLLFTT 287 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+LANRLMHPS EREYAVRV G++D A +L GVQL DGPA F +++ +GGEG N Sbjct: 288 SGDLANRLMHPSYGAEREYAVRVLGELDAAARDELLEGVQLGDGPARFLSLEEAGGEGAN 347 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +W+ V ++EGRNREVRR++EAVG+ VSRLIRVRY + LP GL RG + ELD + L+ Sbjct: 348 RWWRVVISEGRNREVRRMFEAVGLTVSRLIRVRYASVVLPAGLRRGDFVELDKSLVQALQ 407 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAV 272 E S RR NQ R Sbjct: 408 ---GRSGEAPSGAGDRPARRPNGQNQGGRRN 435 >UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICF2_9CLOT Length = 235 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 126/242 (52%), Gaps = 8/242 (3%) Query: 1 MSE-KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISV 59 MSE +LQK LA AG SRR+ E +I+ GRV+V+ I + VT + +DG ++ Sbjct: 1 MSEIRLQKYLAHAGVASRRKAEEMIKQGRVAVNNVIIEN-MGATVTCNDVVTVDGKPVTT 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 E+ + KP G + T D GRP V D + G R VGRLD +T GL+L Sbjct: 60 EEAK----VYIMLNKPVGYVSTSKDQFGRPAVIDLVKDA-GKRLYPVGRLDYDTSGLILL 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG+ RL HP EV + Y + G D ++ G++++D + + +G Sbjct: 115 TNDGDFTYRLTHPKHEVNKVYEAVISGFPDKNEITRFETGLKIDDYQTSPAEFEVLNKKG 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 IN +T+ EG+NR+VR++ EA+G +V L R++ G I L + LP G W L + Sbjct: 175 INTLVRITIHEGKNRQVRKMCEAIGHKVLTLKRIQIGPIAL-ENLPEGKWRHLSDNEVKI 233 Query: 240 LR 241 L Sbjct: 234 LY 235 >UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria RepID=Q12AB3_POLSJ Length = 544 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 136/295 (46%), Positives = 182/295 (61%), Gaps = 8/295 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA+AG GSR E+E +I GR+SV+ + A +G R++ G ++++G I VR Sbjct: 96 TPKLHKVLAQAGLGSRLEMEQLILEGRISVNAEPAHIGQRIQF--GDTVKVNGKPIRVRI 153 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 RV+AY+KP GE+ T +DP+ RPTVF RLPKL +W +VGRLD+NT GLLL T+ Sbjct: 154 DPPP-PRVIAYHKPSGEVVTHDDPQNRPTVFRRLPKLFQGKWQSVGRLDLNTEGLLLLTS 212 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 GELAN+LMHP +EREYAVRV G + + + + L GV L+DG A F +I+ GGEG N Sbjct: 213 SGELANKLMHPRFGLEREYAVRVLGALSNEEKKRLLEGVTLDDGVAQFSSIEAGGGEGAN 272 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 WY VT++EGRNREVRR++EAVG VSRLIR+RYG + LP+GL RG + ELD L Sbjct: 273 CWYRVTISEGRNREVRRMFEAVGHAVSRLIRIRYGAMLLPRGLKRGAFVELDERDIWALT 332 Query: 242 ELV-----ELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 V P + K + R +R+ + G R +G Sbjct: 333 NAVTRSESRADPRGAPKHPGHVRGDEGGEFRPGRGPRRNERSRGDRGRLPAPESG 387 >UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B0TFD8_HELMI Length = 333 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 107/288 (37%), Positives = 150/288 (52%), Gaps = 14/288 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVR 60 + +LQK+LA G SRRE E++I AGRV ++G + + G RV+ I +DG ++ R Sbjct: 5 TVRLQKLLAAHGVASRREAEAMIRAGRVRINGTVVREQGVRVD-GARDVIEVDGRILKRR 63 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E+ A YKP G + T DP+GR TV L + R VGRLD +T GLLL T Sbjct: 64 EAP----LYYALYKPRGVVTTCKDPQGRQTVIGLLSGV-NERVYPVGRLDRDTEGLLLLT 118 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG+LA RL HP VE+ Y R+ G V L+ L+ GVQLEDG A ++ EG Sbjct: 119 NDGQLAFRLTHPRFGVEKTYRARLRGDVSAGALKALAEGVQLEDGVTAPAQVRLLRREGD 178 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 W + + EGR R++RR+ +A+G V L R+ +G I L K L G L A+ L Sbjct: 179 ATWIEIKIHEGRKRQIRRMGDAIGHPVIDLERIAFGPITLGK-LKPGEVRPLTSAELRAL 237 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRN 288 + + T A +D RR A R A ++V+ + G+ Sbjct: 238 KSAAGMKEAT----AHGRDERRQTARPSRTAAT--AKVASAHKDAGKG 279 >UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WE21_VEREI Length = 520 Score = 292 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 134/292 (45%), Positives = 182/292 (62%), Gaps = 6/292 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA+AG GSR E+E +I GR+SV+ + A +G R++ G +++++G I R Sbjct: 170 TPKLHKVLAQAGLGSRLEMEQLILEGRISVNNEPAHIGQRIQF--GDQVKVNGKPIRYRI 227 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 RV+AY+KP GE+ + +DP RPTVF RLP+L +W +VGRLD+NT GLLL T+ Sbjct: 228 DPPP-ARVIAYHKPVGEVVSHDDPHNRPTVFRRLPRLVQGKWQSVGRLDLNTEGLLLLTS 286 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 GELAN+LMHP +EREYAVRV G + + + + L GV+L+DG A+F TI+ GGEG N Sbjct: 287 SGELANQLMHPRFGLEREYAVRVLGALSNEEKQKLLDGVRLDDGIASFGTIEDGGGEGAN 346 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 WY VT+ EGRNREVRR+ EAVG VSRLIR+RYG + LP+GL RG W ELD L Sbjct: 347 CWYRVTIAEGRNREVRRMLEAVGHAVSRLIRIRYGAMVLPRGLKRGTWLELDERDIRALA 406 Query: 242 ELVELPP---ETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNN 290 + T + ++R ++ R + G +G R N Sbjct: 407 QAAGARAPALSTRTPTDARAGKQRERSGPPMGNGPRRGRSPQGPAAGARAQN 458 >UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formigenes RepID=C3X1E1_OXAFO Length = 510 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 139/300 (46%), Positives = 188/300 (62%), Gaps = 16/300 (5%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA AG GSRR++E +I AGRVSV+G+ A +G R+ P ++R++G LI R+ Sbjct: 173 APKLHKVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRI--LPTDQVRLNGKLIQ-RK 229 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 A+ + RVL Y+KP GE+ +R+DPE RP+VFDRLP L+ ++W+AVGRLD NT GLLLFT Sbjct: 230 IAKSLPRVLTYHKPAGEIVSRDDPEKRPSVFDRLPLLKNSKWLAVGRLDFNTEGLLLFTN 289 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+LANRLMHP +EREYAVR G++++ + L GV L DG F I GGEG+N Sbjct: 290 SGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLLAGVDLGDGIGQFSKIVDGGGEGVN 349 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +WY VT+ EGRNREVRR++EAVG+ VSRLIR RYG + L + L RG W EL+ L Sbjct: 350 KWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAVVLSQSLKRGRWDELEENAVRNLL 409 Query: 242 ELVELPPETSSKVAVEKDRRRM-------------KANQIRRAVKRHSQVSGGRRSGGRN 288 L L + K + R +++ + + GG++ RN Sbjct: 410 RLSGLDNKDDKKTQGKTRSRNASGQYPDFPKSQSLSIRELQLQGQHQKKSPGGQKGSPRN 469 >UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q24V73_DESHY Length = 257 Score = 289 bits (740), Expect = 8e-77, Method: Composition-based stats. Identities = 104/248 (41%), Positives = 149/248 (60%), Gaps = 9/248 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVR 60 E+LQKVLA+AG SRR E II GRV V+G++ + LG +V T +I +DG L+S+ Sbjct: 15 EERLQKVLAQAGIASRRHAEEIILQGRVKVNGEVIRTLGTKVVST--DRIVVDGRLLSIP 72 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 ++ +KP G + + DP+GR TV + +PK+ R VGRLD +T GLLL T Sbjct: 73 QND---YAYYLLHKPTGYITSVTDPQGRKTVMELMPKI-PRRVYPVGRLDYDTSGLLLLT 128 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG+LA+RLMHPS VE+ Y V V ++ + L+ L +GV LEDG A I+ +G Sbjct: 129 NDGDLAHRLMHPSYGVEKTYRVEVGEKIPEQALKRLEKGVLLEDGKTAPARIREVSPKGR 188 Query: 181 NQ--WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 Y +T+ EGRNR+VRR+++AVG +S L R+R+G + L L G + L + Sbjct: 189 GSLPTYEITIHEGRNRQVRRMFKAVGFPLSTLKRLRFGPLELDPSLAPGAFRTLSKTEIQ 248 Query: 239 YLRELVEL 246 +LR V+L Sbjct: 249 HLRRAVKL 256 >UniRef50_Q1H048 Pseudouridine synthase n=4 Tax=Betaproteobacteria RepID=Q1H048_METFK Length = 383 Score = 288 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 135/296 (45%), Positives = 192/296 (64%), Gaps = 10/296 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++L K+LA AG GSRRE+E++I +GR++++GK A++G V P +R+D + + Sbjct: 29 QRLHKLLALAGFGSRREMETLIASGRITINGKTAEVGASVV--PSDVVRLDSRPLRLPFE 86 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E + +VL Y+KPEGE+ + +DPE R +VFD+LP++R +WIA+GRLD+NT GLL+FTT Sbjct: 87 PE-LPQVLLYHKPEGEIVSHDDPENRASVFDKLPRIRNGKWIAIGRLDMNTSGLLIFTTS 145 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANR MHP EVEREYAVR+FG++ + ++ L+ G++L+DGPA F +I+ GGEG N Sbjct: 146 GELANRFMHPRYEVEREYAVRIFGELTEGEMAQLTYGIELDDGPANFDSIRPQGGEGANH 205 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 WY V L EGRNREVRRL+EA VSRLIRVR+G + LP L RG L + L E Sbjct: 206 WYEVILREGRNREVRRLFEAFQKPVSRLIRVRFGPVNLPPRLKRGQMIHLGAKEVTALLE 265 Query: 243 LVELP-PETSSKVAVEKDRRRM------KANQIRRAVKRHSQVSGGRRSGGRNNNG 291 EL P+ + +++ ++ KA + R + H + G RR G Sbjct: 266 WAELAVPKAVPRQLSPREKEKLGKVFTPKARKSRFDPEAHLESRGPRRVTKAREEG 321 >UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3U4L2_9BACT Length = 420 Score = 286 bits (732), Expect = 6e-76, Method: Composition-based stats. Identities = 100/290 (34%), Positives = 150/290 (51%), Gaps = 8/290 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISV 59 M +LQK++A G SRR+ E +I +GRV+++G + +LG +V+ +++DG + Sbjct: 1 MDVRLQKLIAGTGLASRRKAEELITSGRVTINGSVVKELGTKVDPA-RDHVKVDGKHLR- 58 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 A Q L KP+ + T +DPEGRPTV D L + R VGRLD ++ GL+L Sbjct: 59 ---AAQPYVYLILNKPKNVMSTLDDPEGRPTVKDLLHGV-TVRVFPVGRLDFDSEGLMLL 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T G+LA L+HP V + Y ++V G +DDAK+ L RGV+LEDG A +K Sbjct: 115 TNHGDLAQALLHPRYHVPKTYLIKVKGVLDDAKIEALERGVKLEDGFTAPAKVKKVSRAE 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 N W VT+ EGR +V+R+ EAVG V +L+RVR G + L L + L + N Sbjct: 175 SNSWLEVTIHEGRKHQVKRMVEAVGHSVIKLVRVRMGPLLLG-DLAPREYRFLTDREANR 233 Query: 240 LRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNN 289 LRELVE + + ++ + + G ++ Sbjct: 234 LRELVEDRVARAERPELDASGKPTRWMPPTEPAPPRPPKPERSGRGPKSQ 283 >UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY92_THERP Length = 282 Score = 286 bits (732), Expect = 7e-76, Method: Composition-based stats. Identities = 104/284 (36%), Positives = 144/284 (50%), Gaps = 10/284 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVR 60 ++LQ+VLA G SRR+ E +I AGRV+VDG + +LG +V+ +I +DG + Sbjct: 7 EQRLQRVLAAHGVASRRKAEELILAGRVTVDGVVVRELGRKVDP-ERQEICVDGKPLHSE 65 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 R + +KP G + T D GR TV D + R + VGRLD ++ GLLL T Sbjct: 66 PR-----RYIVLHKPVGYITTTADEYGRKTVLDLV--QVPERVVPVGRLDRDSSGLLLLT 118 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG+L R+ HP E+E+EY V V G L RGV ++ P + ++ E Sbjct: 119 NDGDLIYRITHPRYELEKEYEVLVDGFPPPEVEEALRRGVPVDGRPVRIRRLEAIRVEPQ 178 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 Y V + EGRNR +RR++E VG V RL RVR G + L LP G W +L ++ L Sbjct: 179 GTVYRVVIHEGRNRIIRRVFERVGYPVLRLQRVRVGPLRLG-DLPPGRWRDLTASEVAAL 237 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRS 284 R V LP V E+ R + RR +R S V R Sbjct: 238 RRAVGLPEFPEGAVGRERKARGGRGMPARRGDRRPSGVRKEHRR 281 >UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVQ2_DICNV Length = 266 Score = 286 bits (732), Expect = 8e-76, Method: Composition-based stats. Identities = 121/261 (46%), Positives = 163/261 (62%), Gaps = 7/261 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 ++++QK LA G GSRR+IE+ I+ GR+ VDG++A+LG ++ ++ +DG + + Sbjct: 8 AQRIQKYLAARGVGSRRQIETWIKEGRLKVDGRVAELGQKISGNE--RLSLDGKPLRIAV 65 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + +L Y+KP GE+CTR DPEGR +VF LPK+ RW+A+GRLD+NT GLLLFT Sbjct: 66 EHKNPHMILMYHKPAGEICTRKDPEGRVSVFQHLPKISHGRWVAIGRLDLNTSGLLLFTN 125 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTI-----KFSG 176 DG LAN+LMHPS E+EREY VRV G+V + L L +G+ L+DG A F I Sbjct: 126 DGALANQLMHPSAEIEREYWVRVAGEVTEEMLTALRQGIPLDDGLARFTEICPLKTLHED 185 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 N++++VTL EGRNREVRRLWEAVG +VSRL R+RYG I LP L G L + Sbjct: 186 DTQFNRYFSVTLKEGRNREVRRLWEAVGCKVSRLKRIRYGTISLPPSLSAGRHRLLTAGE 245 Query: 237 TNYLRELVELPPETSSKVAVE 257 L LV + Sbjct: 246 QASLISLVSEKNRRDNSPKPR 266 >UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C7M7R0_CAPOD Length = 387 Score = 285 bits (731), Expect = 8e-76, Method: Composition-based stats. Identities = 88/243 (36%), Positives = 128/243 (52%), Gaps = 10/243 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVR 60 +L K +A AG SRR + I AG V+V+G++ LG RV+ P ++R DG L+S Sbjct: 153 EVRLNKYIADAGICSRRNADMYISAGNVTVNGEVMTTLGYRVK--PTDEVRFDGKLLSSE 210 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + KP+G + T ND +GR TV D + R + VGRLD T GLLL T Sbjct: 211 KKE-----YILLNKPKGFITTTNDEKGRKTVMDLVANATNVRILPVGRLDRATTGLLLLT 265 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGEL +L HP+ V + Y V + ++D + G++LEDG I + + Sbjct: 266 NDGELTKKLTHPTHGVRKIYHVILDRKLDYKDFMKVQDGLELEDGLIEVDEISYVNDKPK 325 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+ + + GRNR VRR++E +G QV +L RV + + K LPRG W L + L Sbjct: 326 NE-IGIKIHSGRNRIVRRIFEHLGYQVEKLDRVVFAGLT-KKDLPRGHWRRLTQQEVINL 383 Query: 241 REL 243 R + Sbjct: 384 RNM 386 >UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNA2_CRYCD Length = 296 Score = 285 bits (731), Expect = 9e-76, Method: Composition-based stats. Identities = 90/244 (36%), Positives = 129/244 (52%), Gaps = 7/244 (2%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK LARAG SRR E +I AGRV+V+G I +LG +V+ ++ +DG +++ Sbjct: 51 RLQKFLARAGVASRRGSERLISAGRVAVNGIVITELGTKVDPL-VDEVCVDGAIVTWGAP 109 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 A LA KP G + T D GR V D +P + +GRLD +T GLLLF+TD Sbjct: 110 A----VTLALNKPAGIITTMKDLRGRRCVADIMPTEQYPGLFPIGRLDQDTTGLLLFSTD 165 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G L N L+HPS V + Y + G + A L L+ G+ L+DG A + + Sbjct: 166 GNLGNALLHPSHGVSKVYRATIEGSIGQAALEQLASGILLDDGMTAPARVSVVQAGKKHS 225 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + L EGR +V+R+ +AVG V +L R +G I L GL G + L+ A+ + L Sbjct: 226 VIELELHEGRKHQVKRMCQAVGHPVVKLHRASFGPIDLA-GLATGAYRRLEGAELSVLYN 284 Query: 243 LVEL 246 L Sbjct: 285 AAGL 288 >UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=A9ITY6_BORPD Length = 588 Score = 285 bits (731), Expect = 9e-76, Method: Composition-based stats. Identities = 140/298 (46%), Positives = 191/298 (64%), Gaps = 13/298 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 KL KVLA AG GSRRE+E +I AGRVSV+G+ A +G RV P ++R++G + R + Sbjct: 124 KLHKVLADAGIGSRREMEELITAGRVSVNGEPAHIGQRV--APSDQVRVNGKPV-ARPNT 180 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 ++ RV+ Y+KP GE+ + +DP GR +VF RLPKLR +W++VGRLD+NT GLL+FTT G Sbjct: 181 KKPPRVILYHKPAGEIVSHDDPGGRASVFARLPKLRTGKWLSVGRLDLNTEGLLIFTTSG 240 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 ++ANR+MHP EREYAVRV G++DDA + L G++LEDG AAF + + GG+G N+W Sbjct: 241 DMANRIMHPRYGTEREYAVRVLGEMDDATRKSLVEGIELEDGQAAFGALDYLGGDGSNRW 300 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 Y VTL EGRNREVRR++E+VGV VSRLIR R+GD+ LP+ L RG W ELD + L Sbjct: 301 YRVTLQEGRNREVRRMFESVGVTVSRLIRTRFGDLVLPRTLRRGRWEELDSSLVTALMVQ 360 Query: 244 VELPPETSSKVAVEKDRRRM---KANQIRRAVKRHSQVSGGR-------RSGGRNNNG 291 + L + R+ A + ++G R + GG + G Sbjct: 361 LGLLRDDDDADGGRNARQPRSHDSALPPGFGTMDRNGMNGARIGRRGKLQGGGPGSAG 418 >UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q31GA0_THICR Length = 317 Score = 285 bits (731), Expect = 9e-76, Method: Composition-based stats. Identities = 135/277 (48%), Positives = 181/277 (65%), Gaps = 5/277 (1%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 EKLQK+LAR G GSRRE+E +I G V V+GK+A LGDR P ++++ L+ Sbjct: 18 EKLQKILARGGFGSRREVEKLISQGLVKVNGKVATLGDRAF--PTDTLKVNDQLVKETRL 75 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 +Q +V+ Y KPEG++C+R D +GR T+F LP++ +RWI+VGRLD+NT GLL+ T + Sbjct: 76 EKQPTQVILYNKPEGQVCSRKDEKGRETIFTSLPRIINSRWISVGRLDINTSGLLILTNN 135 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKT---IKFSGGEG 179 GELANRLMHPS E+EREY+VRVFG+V D L L +GV+LEDG A F++ I + Sbjct: 136 GELANRLMHPSYEMEREYSVRVFGEVSDEILDRLKKGVKLEDGFAKFESIGKIPQQEEDS 195 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 INQWY V + EGRNREVRR+WE+ GVQVSRL+R RYG LP+ L RG L Q N Sbjct: 196 INQWYRVVIKEGRNREVRRIWESQGVQVSRLVRTRYGQFSLPRNLRRGKSEPLTWKQINQ 255 Query: 240 LRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHS 276 L + V+LP E + + + A + K+ + Sbjct: 256 LLKSVDLPEEPRPDLRNNPAKAKKMAARHAEPFKKET 292 >UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=A4J3M3_DESRM Length = 309 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 93/289 (32%), Positives = 144/289 (49%), Gaps = 8/289 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISV 59 M E+LQK+LA+AG SRR E +I +G+V V+GK + ++G +V+ T KI + G + Sbjct: 1 MEERLQKILAKAGVASRRHSEELIISGQVKVNGKTVTEMGLKVDPT-KDKIEVKGKPLPP 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 E L KP G + T +D R TV D L + R VGRLD ++ GLLL Sbjct: 60 LEKK----VYLLMNKPRGYVTTLSDERDRKTVVDLLKGVE-QRVYPVGRLDYDSEGLLLL 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DGEL L HP +V++ Y +V G + +L+ +++G+ LEDGP A ++ +G Sbjct: 115 TNDGELTQALTHPKHKVKKTYLAKVDGIPETEELKAMAKGLVLEDGPTAPADVRLAGTGD 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +++ EGRNR+VRR+ E +G +V RL R R G + L L G L + Sbjct: 175 NRALLEISIHEGRNRQVRRMCEHIGYKVLRLRRTRIGTLELGS-LKSGEVRALTKKELRE 233 Query: 240 LRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRN 288 L LV L + + +++ + R + ++ Sbjct: 234 LASLVGLKQNYNDMQLTTEVQKKKPSPCGRVGRIKGKVSEQKSNRSAKS 282 >UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=C8WXC0_ALIAD Length = 273 Score = 285 bits (729), Expect = 2e-75, Method: Composition-based stats. Identities = 115/287 (40%), Positives = 156/287 (54%), Gaps = 19/287 (6%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRE 61 E+LQKVLA AG SRR+ E +I AGRVSVDG+I LG +V+ + +I +DG I + + Sbjct: 2 ERLQKVLAHAGVASRRKCEELILAGRVSVDGEIVTQLGAKVDPS-RQRIAVDGVPIELEQ 60 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 VL KP L T +DP GR TV LP +R R VGRLD +T GLLLFT Sbjct: 61 PV-----VLVLNKPVAYLSTVSDPLGRRTVMQLLPPIR-ERVYPVGRLDYDTSGLLLFTN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG---PAAFKTIKFSGGE 178 DGEL RL+HPSRE+E+ Y V V G VD R L GV+LEDG PA + ++ + E Sbjct: 115 DGELTQRLLHPSREIEKVYRVSVRGIVDRETRRALMEGVELEDGVTAPAKVEVLRQADRE 174 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 ++ + EGRNR+VRR++E +G+ V RL R+ +G + L L G W L + Sbjct: 175 DGVAVVHLAIHEGRNRQVRRMFERLGLPVLRLKRIAFGPVSLG-HLKTGEWRALTQEEWV 233 Query: 239 YLRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSG 285 L + + P + + ++ R+ R S G R G Sbjct: 234 ALYQAAGMTPPPYRRPTISRE-------PARKGAARASARDHGSRRG 273 >UniRef50_B9ZS86 Pseudouridine synthase n=2 Tax=Chromatiales RepID=B9ZS86_9GAMM Length = 318 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 152/284 (53%), Positives = 190/284 (66%), Gaps = 6/284 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSE++QKVLA G GSRREIE IE G V V+ + AKLGD +V P IR+ G +I + Sbjct: 1 MSERVQKVLAARGLGSRREIEGWIERGEVKVNQRTAKLGD--QVGPNDVIRVRGRVIHMA 58 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E A R L Y+KP GE+C+R+DPEGR VF LP+L+G RW+AVGRLD+NT GLLLFT Sbjct: 59 EHAH---RWLVYHKPVGEICSRSDPEGRKPVFASLPRLKGQRWVAVGRLDLNTSGLLLFT 115 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDGELANRLMHPS +EREYAVRV G+V D R L GV+LEDGPA F ++ GG+G Sbjct: 116 TDGELANRLMHPSHSLEREYAVRVLGEVPDDTRRMLLEGVELEDGPARFDVLEERGGDGA 175 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N W++V ++EGRNR VRRLW+AVGV VSRLIRVRYG + L +GL G +L++ + L Sbjct: 176 NHWFHVVVSEGRNRLVRRLWDAVGVTVSRLIRVRYGPVVLGRGLKTGASRDLEVREVEAL 235 Query: 241 RELVELP-PETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRR 283 E VELP PE+ + + R + K +V R Sbjct: 236 YEAVELPVPESIRERGRRRGPGRNTRPARGKRGKSGGRVREADR 279 >UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFA0_THET1 Length = 253 Score = 282 bits (723), Expect = 9e-75, Method: Composition-based stats. Identities = 99/261 (37%), Positives = 135/261 (51%), Gaps = 10/261 (3%) Query: 1 MSE--KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLIS 58 M+E +L K+LA+ G SRR E +I GRVSV+G+I + +P +IR+DG L+ Sbjct: 1 MNEPIRLHKLLAQMGVASRRAAERMIAEGRVSVNGRIVNTPGAM-ASPEDEIRVDGKLVR 59 Query: 59 VRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 + R + KP G L T D GR TV D L + R VGRLD ++ GL+L Sbjct: 60 QQPK----MRYILLNKPAGVLSTAKDERGRKTVIDLLGQ--SNRVYPVGRLDKDSEGLML 113 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DGELA R+ HP V ++Y V V G D L+DL +GV+LEDG + K Sbjct: 114 LTNDGELAQRITHPRYGVHKQYMVEVEGYFSDRSLQDLLQGVELEDGFSKPLDAKIISRS 173 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 +T+ EGR R+VRR A+G +V RL RV G + L L G + EL + Sbjct: 174 RDKSKLLITMGEGRKRQVRRTLAALGYKVKRLTRVALGPLSLG-NLKPGEYRELSDQEAK 232 Query: 239 YLRELVELPPETSSKVAVEKD 259 +LR + L PE S+ Sbjct: 233 WLRSQLGLTPEISNIQQNHGR 253 >UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae RepID=C5CXG1_VARPS Length = 604 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 137/291 (47%), Positives = 190/291 (65%), Gaps = 10/291 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 S KL KVLA+AG GSR E+E++I GR+SV+ + A +G R++ G +++I+G I R Sbjct: 197 SPKLHKVLAQAGLGSRLEMEALILQGRISVNNEPAHIGQRIQY--GDQVKINGKPIRYR- 253 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 A RV+AY+KP GE+ T +DP+ RPTVF +LP+L+ +W +VGRLD+NT GLLLF++ Sbjct: 254 IAPPPPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPRLQQGKWQSVGRLDLNTEGLLLFSS 313 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+LAN+LMHP +EREYAVRV G ++ + + L GV+L+DG A F TI+ GGEG N Sbjct: 314 SGDLANQLMHPRFGLEREYAVRVLGALNAEEKKKLLEGVRLDDGMAQFGTIEEGGGEGSN 373 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 WY VT++EGRNREVRRL+E+VG VSRLIR+RYG + LP+GL RG W ELD + L Sbjct: 374 HWYRVTISEGRNREVRRLFESVGHAVSRLIRIRYGAMVLPRGLKRGAWMELDERDISALF 433 Query: 242 ELVE----LPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRN 288 + PP+ E +R R ++ +GG + R+ Sbjct: 434 QASGGGAPRPPQQQRGPGQEGAGGGRNGRNKKR---RGNRNAGGGQQQPRD 481 >UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA52_9PORP Length = 472 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 84/272 (30%), Positives = 135/272 (49%), Gaps = 10/272 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ +G SRR + I AGRV V+G + +LG +V P ++ +D +++ Sbjct: 207 RLNKFLSNSGLCSRRTADQYIAAGRVKVNGAVVSELGS--QVLPTDQVMVDDKPVTLEAK 264 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP+ + T DPEGR TV D + R +GRLD NT G+LL T D Sbjct: 265 V-----YVLLNKPKNCVTTLTDPEGRRTVMDLVHNACTERIYPIGRLDRNTTGILLLTND 319 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA RLMHP+ ++ Y V + +V ++ ++ G +LEDG I + G+ ++ Sbjct: 320 GDLAVRLMHPAFRKKKIYEVALDKEVTVEHMQMIAHGFELEDGEIHADAISYITGQTHDK 379 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + GRNR VRR++E +G +V L RV Y + K LPRG W L + YLR Sbjct: 380 -VGIEIHSGRNRIVRRIFEHLGYRVVHLDRVYYAGLT-KKDLPRGRWRYLTPEEVRYLRM 437 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKR 274 ++ + + + + + + Sbjct: 438 GIKEQEDNGVAPTTKVYHKHQETPDHPFSSEE 469 >UniRef50_Q5F8V3 Pseudouridine synthase n=21 Tax=Proteobacteria RepID=Q5F8V3_NEIG1 Length = 350 Score = 280 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 129/256 (50%), Positives = 177/256 (69%), Gaps = 6/256 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKVLA +G GSRRE+E I G V+V+GK A+LGD+V TP + + G +I ++ Sbjct: 98 ERLQKVLAASGVGSRREMEEWINNGWVTVNGKTAQLGDKV--TPDDHVTVKGSIIKLK-W 154 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 A+++ R++ YYK EGE+ +R+DP+GR ++FDRLP+ +RW+A+GRLD+NT GLL+ TT Sbjct: 155 ADRLPRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTS 214 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDL-SRGVQLEDGPAAFKTIKFSGGEGIN 181 GEL R HPS EVEREYAVRV G + ++R L GV LEDG A + I GGEG N Sbjct: 215 GELVQRFAHPSFEVEREYAVRVLGGLTTEQMRSLTEEGVMLEDGLAKVERIYEQGGEGAN 274 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +WYN+ + EGRNREVRR++E+ G+ VSRL+RV +G I LP L RG + EL+ A+ + Sbjct: 275 KWYNIVIKEGRNREVRRIFESQGLTVSRLVRVAFGPIGLPNRLKRGQFYELNPAEVANIL 334 Query: 242 ELVE--LPPETSSKVA 255 + + LP E K A Sbjct: 335 KWADMLLPGERRRKKA 350 >UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJH7_THEYD Length = 237 Score = 280 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 89/242 (36%), Positives = 134/242 (55%), Gaps = 7/242 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M E+LQK+L+ G SRR E +I+ GRV+V+G+IA +G + + I++DG L+ Sbjct: 1 MLERLQKILSDYGIASRRHAEELIKEGRVTVNGQIAVIGQKADP-EKDYIKVDGKLLIKP 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E A+YKP + DP+GRPT+ D + ++ R VGRLD ++ GLLL T Sbjct: 60 EPK----VYYAFYKPRKVITALLDPQGRPTIRDFIKGIKF-RIYPVGRLDFDSEGLLLLT 114 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELA ++MHPS ++E+ Y V+V G V+ + L +G+++E A ++ Sbjct: 115 NDGELAYKVMHPSSQIEKTYMVKVDGIVEPETIEKLRKGIKIEGKLAVPVSVHLVKKLKA 174 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N W +TL EGR R++R++ E VG V RLIR+ + L L G L + L Sbjct: 175 NSWIKITLHEGRKRQIRKMLERVGHPVIRLIRIAIDGVKLG-DLKPGQLRPLTKEEIEKL 233 Query: 241 RE 242 R Sbjct: 234 RR 235 >UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693918 Length = 249 Score = 279 bits (715), Expect = 6e-74, Method: Composition-based stats. Identities = 99/243 (40%), Positives = 138/243 (56%), Gaps = 11/243 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISV 59 M E+LQKVLA AG SRR+ E II AGRV V+ K+ LG +V I++DG I Sbjct: 1 MEERLQKVLAAAGVASRRKCEEIILAGRVEVNDKVVSTLGVKVNPHQ-DVIKVDGRAIQN 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 +E + + KP+G + + +DPEGR V D L ++ R VGRLD +T GLL+ Sbjct: 60 QEKI-----YILFNKPKGVITSVSDPEGRRVVGDFLKGIK-ERVYPVGRLDYDTEGLLIL 113 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF--SGG 177 T DGE AN + HP V + Y V G + L L GV+LEDG A +++ Sbjct: 114 TNDGEFANMVTHPRHHVSKTYHATVKGVPHGSVLEKLREGVKLEDGMTAPAEVEYHDIDP 173 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 + ++T+ EG+NR+VRR++EAVG V+RL RV++G IPL GLPRG + + + Sbjct: 174 DKKQSVISITIYEGKNRQVRRMFEAVGYPVTRLKRVKFGSIPLV-GLPRGKFRRMRKEEV 232 Query: 238 NYL 240 L Sbjct: 233 QAL 235 >UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1Y0J0_9BACT Length = 555 Score = 279 bits (715), Expect = 8e-74, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 130/240 (54%), Gaps = 10/240 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRES 62 +L K LA AG SRRE + I AG+V+V+G++ +LG ++ +++ L+S+ + Sbjct: 321 RLNKFLANAGVCSRREADDFILAGQVTVNGEVINELGTKI--LRTDEVKFQDKLVSLEKK 378 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP+ + T +DP+ R TV D + R VGRLD NT G+LLFT D Sbjct: 379 V-----YVLLNKPKDYVTTSDDPQQRKTVMDLVKDACPERIYPVGRLDRNTTGVLLFTND 433 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA++L HP ++ Y V + + +L+ +S G++LEDG I+++ E Sbjct: 434 GDLASKLTHPKFLKKKVYHVFLDKPITANELQKISDGIELEDGEIKADAIEYANPE-DQA 492 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + G+NR VRR++E++G +V +L RV + + K + RG W L + LR Sbjct: 493 QVGIEIHSGKNRIVRRIFESLGYRVVKLDRVMFAGLT-KKNVRRGDWRFLTEKEVEMLRM 551 >UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales RepID=B1XJP9_SYNP2 Length = 259 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 125/245 (51%), Gaps = 6/245 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M+E++QK+LAR G SRR E +I AGRV+++GK +LGD+ + G ++ +DG + Sbjct: 1 MAERVQKILARWGIASRRGAEKLILAGRVTLNGKPVQLGDQADP-EGDRLCVDGKPLKAT 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLL 118 E +KP+G + T DP+GR TV D LP +G +GRLD + G LL Sbjct: 60 ERPR--HYYYLIHKPKGVVSTCADPKGRSTVLDLLPPPLRQGKGIHPIGRLDAQSTGALL 117 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG L HP + + Y V + G+V + L +GV L D I Sbjct: 118 LTNDGNFTLALTHPRYHIPKTYRVWLKGKVPEHVLDQWRQGVMLGDRRTLPTQIHLKTIT 177 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 ++ LTEGRNR++RR+ E +G V +L R+ G++ L L RG L A+ Sbjct: 178 QDKTCIDIMLTEGRNRQIRRVAEQLGFPVVKLHRLAIGNLHLG-DLQRGQARPLTKAEIK 236 Query: 239 YLREL 243 LR Sbjct: 237 QLRSQ 241 >UniRef50_B4RM91 Pseudouridine synthase n=8 Tax=Betaproteobacteria RepID=B4RM91_NEIG2 Length = 416 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 129/256 (50%), Positives = 177/256 (69%), Gaps = 6/256 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKVLA +G GSRRE+E I G V+V+GK A+LGD+V TP + + G +I ++ Sbjct: 164 ERLQKVLAASGVGSRREMEEWINNGWVTVNGKTAQLGDKV--TPDDHVTVKGSIIKLK-W 220 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 A+++ R++ YYK EGE+ +R+DP+GR ++FDRLP+ +RW+A+GRLD+NT GLL+ TT Sbjct: 221 ADRLPRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTS 280 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDL-SRGVQLEDGPAAFKTIKFSGGEGIN 181 GEL R HPS EVEREYAVRV G + ++R L GV LEDG A + I GGEG N Sbjct: 281 GELVQRFAHPSFEVEREYAVRVLGGLTTEQMRSLTEEGVMLEDGLAKVERIYEQGGEGAN 340 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +WYN+ + EGRNREVRR++E+ G+ VSRL+RV +G I LP L RG + EL+ A+ + Sbjct: 341 KWYNIVIKEGRNREVRRIFESQGLTVSRLVRVAFGPIGLPNRLKRGQFYELNPAEVANIL 400 Query: 242 ELVE--LPPETSSKVA 255 + + LP E K A Sbjct: 401 KWADMLLPGERRRKKA 416 >UniRef50_D0L0G8 Pseudouridine synthase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0G8_HALNC Length = 369 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 138/262 (52%), Positives = 176/262 (67%), Gaps = 3/262 (1%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 ++LQK+LA G GSRR IE I AG V ++G +A+LGD E G + + G I+V + Sbjct: 3 KQRLQKILATQGLGSRRMIEGWISAGEVKLNGVVAQLGDVAEA--GDVLDVRGQKITVSD 60 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 I RV+ Y+KPEGE+ + +DPEGRPTVF LP +R RWI VGRLD NT GLLL T Sbjct: 61 ETP-IRRVIIYHKPEGEITSTSDPEGRPTVFGSLPAIRQGRWITVGRLDFNTSGLLLATN 119 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGELANRLMHPS ++ER YAVRV G + + +++ L+ VQL+DGPA F + +GG G+N Sbjct: 120 DGELANRLMHPSHQIERTYAVRVLGGLTEDQVKQLTTEVQLDDGPAHFDQLSDAGGTGVN 179 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +WY+VTL EGRNRE+RR+ EAVG VSRLIR+ Y IPLP L G +L + L Sbjct: 180 RWYHVTLREGRNREIRRMIEAVGAVVSRLIRISYAGIPLPPRLKPGRAQDLPPEMEDALV 239 Query: 242 ELVELPPETSSKVAVEKDRRRM 263 +LV L PET KV E +RR Sbjct: 240 KLVGLRPETRRKVQDEDTKRRA 261 >UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8G2X0_CHLAD Length = 567 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 92/263 (34%), Positives = 132/263 (50%), Gaps = 7/263 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKVLA AG SRR+ E +I AGRV+V+G++ + ++ +DG + + Sbjct: 4 ERLQKVLASAGIASRRDCEELIAAGRVTVNGRVVTVPGTRVDLEHDEVLVDGQPLRMPAK 63 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + +KP G + T DP GRPTV D + AR VGRLD+++ GL+L T D Sbjct: 64 RT----YIMLHKPAGVVSTAEDPHGRPTVVDLVD--VPARVFPVGRLDLDSEGLILLTDD 117 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA L HPS EVE+EY V + + LR GV LE A ++ Sbjct: 118 GELAYALTHPSFEVEKEYRVLLDRALTPDALRSWRNGVLLEGEMTAPAWVELLETTPEGV 177 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W + L EGR R++R + + +G +V RL+RVR G + L LP W L + LR Sbjct: 178 WVRIVLREGRKRQIRAVAKLLGYEVRRLVRVREGPLQLG-DLPPRAWRHLTDEEVAALRA 236 Query: 243 LVELPPETSSKVAVEKDRRRMKA 265 V + + D + +A Sbjct: 237 HVSVRRSLADVPTRSTDVVKSRA 259 >UniRef50_Q89AL1 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=RLUB_BUCBP Length = 247 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 121/247 (48%), Positives = 169/247 (68%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M EK+QK+LAR G+GSRR IES+I++ V ++ ++ K+G R+ + K+ I+ + + Sbjct: 1 MCEKIQKILARHGYGSRRYIESLIKSHSVKINDEVVKVGQRISINVIQKVIINNNNYKPK 60 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + +VL Y KPEGE+CTR D R T+F++LPKL ARWI +GRLD+N+ GLLLFT Sbjct: 61 LNINKSLKVLLYNKPEGEICTRKDQRNRRTIFEKLPKLSNARWINIGRLDLNSSGLLLFT 120 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDGELA RL HPS +ER Y VRVFGQ + L+ L+ V+L DG A FK+I+F GEG Sbjct: 121 TDGELAYRLTHPSFNIERIYKVRVFGQFTENILKQLNVRVKLLDGYANFKSIQFKYGEGK 180 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+W+NV+L EGR+R VRR+WE +G QV++L+R+ Y + LPK L G W L+ + L Sbjct: 181 NKWFNVSLCEGRHRIVRRIWEKLGFQVNKLVRISYAHLTLPKTLFPGTWITLNKHDIDVL 240 Query: 241 RELVELP 247 + V L Sbjct: 241 CKKVNLR 247 >UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr0361 n=21 Tax=Cyanobacteria RepID=Y361_SYNY3 Length = 249 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 96/252 (38%), Positives = 129/252 (51%), Gaps = 8/252 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M+E++QK+L++ G SRR E +I AGRVSV+GK+A LGD+ + + +DG I Sbjct: 1 MAERIQKLLSQWGIASRRHAEEMILAGRVSVNGKVANLGDKADPQQDF-LSVDGKQIKAD 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLL 118 I L KP L T +DP GR TV D LP+ RG VGRLD N+ G LL Sbjct: 60 NRPRDI--YLLVNKPRDVLSTCDDPRGRKTVLDLLPQDLQRGKGLHPVGRLDRNSTGALL 117 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DGEL RL HP + + Y V + G D L G+ L+ T++ Sbjct: 118 LTNDGELTLRLTHPRYHLPKTYDVWLEGNPSDEDLEKWRSGMMLDGKKTLPATLEVISEN 177 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL---PKGLPRGGWTELDLA 235 VTLTEGRNR++RRL E +G+ V +L R G + L K L G + L A Sbjct: 178 KDQIHLLVTLTEGRNRQIRRLAEELGLTVLKLHRRTIGPLQLHTRGKVLGSGQFRFLSPA 237 Query: 236 QTNYLRELVELP 247 + L++ V L Sbjct: 238 EIRLLKKQVNLR 249 >UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine synthase B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3D27 Length = 271 Score = 277 bits (709), Expect = 3e-73, Method: Composition-based stats. Identities = 101/274 (36%), Positives = 141/274 (51%), Gaps = 11/274 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVRE 61 E+L K LA AG GSRR + +I AGRV V+G K+ +LG +++ + +I +D + + Sbjct: 2 ERLNKYLAHAGVGSRRHCDKLISAGRVKVNGVKVTELGLKIDPSAH-QIAVDDQPVRAEK 60 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 A KP G LCT +DP GRP D LP + R VGRLD + GLLL T Sbjct: 61 -----LVYWAVNKPVGHLCTNHDPAGRPRAVDLLPHVE-QRVYTVGRLDEGSDGLLLMTN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+LA L HP V + Y V V G+ D L+ L GV L DG K+ K +G Sbjct: 115 DGDLAQGLTHPRYGVPKMYFVLVAGRPTDDDLQKLMDGVWLSDGKVRAKSAKRIKAQGNG 174 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W V LTEG+NRE+RR+ G +V RL RV G + L K LP+G + + L+ Sbjct: 175 TWVRVVLTEGKNREIRRMLAKFGHKVMRLKRVAIGPVKLDK-LPKGKARRISDEELKALK 233 Query: 242 ELVELPPE--TSSKVAVEKDRRRMKANQIRRAVK 273 V + T++++ R+ + +R K Sbjct: 234 AFVTRARQKITAARLKAADGGRKTSQDAPKRPRK 267 >UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3JBA6_9PORP Length = 459 Score = 277 bits (709), Expect = 3e-73, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 121/239 (50%), Gaps = 8/239 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K LA +G SRR + +I G VSV+G+I + VT I +DG +S+ + Sbjct: 225 RLNKFLASSGVCSRRVADQLIVDGHVSVNGEIVTQLGK-HVTREDFISVDGKPVSIEKKI 283 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + KP + T +DPE R T D + R VGRLD NT GLLL T DG Sbjct: 284 -----YVLLNKPRNCVTTSSDPEKRLTAIDLVRNACNERIYPVGRLDRNTTGLLLLTNDG 338 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 +LA +LMHP E ++ Y V + V ++ ++ G++LEDG I + + Sbjct: 339 DLAAKLMHPKYEKKKIYQVTLDKPVSVEHMQQIASGIELEDGEIHADAISYVDENNL-AI 397 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + GRNR VRR+++ +G +V +L RV + + K LPRG W L + LR Sbjct: 398 VGIEIHSGRNRIVRRIFKHLGYRVYKLDRVYFAGLT-KKDLPRGRWRYLTEDEVRNLRH 455 >UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID=C1XV14_9DEIN Length = 369 Score = 276 bits (706), Expect = 7e-73, Method: Composition-based stats. Identities = 94/281 (33%), Positives = 140/281 (49%), Gaps = 15/281 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQ+ LARAG SRR+ E +I GRV+++ +IA +G V + + +DG + + E Sbjct: 1 MRLQQFLARAGVASRRKAEDLIREGRVTINDQIAGIGSSV--SESDVVCLDGERVRLPEK 58 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 V+A +KP G T++DP TV+ +P + VGRLD ++ GLLL T D Sbjct: 59 K----VVIALHKPVGVTTTKSDPHAERTVYQLVPDV--PGLHPVGRLDKDSEGLLLLTND 112 Query: 123 GELANRLMHPSREVEREYAVRVF-GQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+L +L HP V + Y G+V +A R L GV L+DG A E Sbjct: 113 GDLTLKLTHPRYGVRKVYRAWCKHGRVSEADCRRLVEGVALDDGLAQA-----LEAEPTQ 167 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + + EG+ REVRR+ +G V+RL+R++ G I L K L G W L + L+ Sbjct: 168 EGARIVMAEGKKREVRRMLGRLGYPVTRLVRLQVGPIKLGK-LNPGEWRYLTPEEIGLLQ 226 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGR 282 L P A K + + + RA+K S+ GR Sbjct: 227 GQKPLKPRKKEGWAKAKPAKFAQQREESRAIKPPSRTEQGR 267 >UniRef50_A5CX60 Pseudouridine synthase n=1 Tax=Candidatus Vesicomyosocius okutanii HA RepID=A5CX60_VESOH Length = 241 Score = 276 bits (706), Expect = 8e-73, Method: Composition-based stats. Identities = 122/245 (49%), Positives = 167/245 (68%), Gaps = 4/245 (1%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M+ +LQK++A AG+GSRR +E +IE GR+ V+ KIA +GD+ E+T ++IDG I++ Sbjct: 1 MANRLQKLIANAGYGSRRWVERLIEQGRIEVNNKIAIIGDKTEITSL--VKIDGRKINLS 58 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 EQ +V+ K G +C+ D +GR +V+ LPK +RWI VGRLD+NT GLLL T Sbjct: 59 RYVEQETKVIILNKQAGVICSNRDDKGRKSVYSLLPKE--SRWIMVGRLDLNTSGLLLVT 116 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 +G+LAN+LMHPS E++REYAVRV GQV + L+ L++GV +DG + F I FSGG+G Sbjct: 117 NNGDLANKLMHPSSEIDREYAVRVLGQVKNKDLKKLTQGVVFDDGFSKFNQITFSGGKGA 176 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+WY V L EG+ REVRRLWE +G +VSRLIR+R+G+I LP L + L Q L Sbjct: 177 NRWYKVVLREGKKREVRRLWEVLGFKVSRLIRIRFGEIRLPDNLKANQYDYLKTVQIKLL 236 Query: 241 RELVE 245 VE Sbjct: 237 FNAVE 241 >UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9GX03_SORC5 Length = 399 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 102/295 (34%), Positives = 147/295 (49%), Gaps = 12/295 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISV 59 M E+LQK++ARAG SRR E +I AGRV V+G++ +LG + + +I +DG + Sbjct: 1 MEERLQKIIARAGVASRRASEELILAGRVRVNGRVVTELGLKAD-RQKDRIEVDGKRL-- 57 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 + +A +KP + T DPEGRPTV D + + GAR VGRLD T G+LL Sbjct: 58 ---VSEAPVYVALHKPRNVVSTLRDPEGRPTVADHV-RGTGARLYPVGRLDFATSGILLM 113 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG+ AN L+HP V + Y ++V G + D L G++LEDG + EG Sbjct: 114 TNDGDFANALLHPRGGVPKTYVLKVQGVMSDDDLTPWREGIRLEDGVTLPAEARLLRHEG 173 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 W VTL EGRN+++RR+ EA G V RL R + + +GL G W L + + + Sbjct: 174 DKTWLEVTLREGRNQQIRRMGEATGWPVMRLARTTFAGVS-SEGLRPGEWRALTVDELLH 232 Query: 240 LRELVELPPETSSKVAVEKDRR---RMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 +RE +P V R A+ R K + + + G Sbjct: 233 IREAFGVPKRIRGAVMGASSGPVDHRRTASSARSGAKASPRPTQEAAGAAARSRG 287 >UniRef50_B6BUN1 Pseudouridine synthase n=1 Tax=beta proteobacterium KB13 RepID=B6BUN1_9PROT Length = 257 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 107/245 (43%), Positives = 167/245 (68%), Gaps = 2/245 (0%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 E++QK LA G GSRR IE +I+ +++V+ K LG V I I+G I + Sbjct: 14 KERIQKFLANMGMGSRRSIEELIKQKKITVNQKPIDLGHMVYGNE--IIHINGRRIYFKN 71 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + ++ R++ Y+KPEGE+ + +DP+ + TVF +LPK++ +WI++GRLD+NT GLLL T Sbjct: 72 AEKRESRLIIYHKPEGEIVSHSDPKHQKTVFQKLPKVKNGKWISIGRLDINTSGLLLITN 131 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+LAN +MHPS++++REY+VR+ G+V + + ++ +GV+L+DG A T + +GGEG N Sbjct: 132 DGKLANHMMHPSQQIDREYSVRILGEVTEEIINNIRKGVKLDDGVAHVDTFEHTGGEGAN 191 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 QW+ + L EGRNRE+RRL E+ ++VSRLIR RYG + LP L RG + EL+ + Sbjct: 192 QWFRIILKEGRNREIRRLVESQNLKVSRLIRTRYGPLNLPSHLKRGQFMELEKKNLEKIF 251 Query: 242 ELVEL 246 +++ + Sbjct: 252 KMLGM 256 >UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KIR7_9FIRM Length = 250 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 100/251 (39%), Positives = 135/251 (53%), Gaps = 14/251 (5%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVR 60 E+LQK++++AG SRR E +I GRV VDG++ +LG +V+ I +DG I+ Sbjct: 4 EERLQKIISQAGIASRRAAEKMILEGRVRVDGQVVRELGTKVDPAAH-TILVDGKKIAGE 62 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E L KP+G L T D GR TV D LP++R R VGRLD NT GLLL T Sbjct: 63 EQ----HVYLLLNKPKGYLSTAKDDRGRRTVLDLLPEVR-ERVYPVGRLDNNTEGLLLIT 117 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG L N L+HP EVE+ Y V G++ + KL+ L G+ LEDG A + Sbjct: 118 NDGALMNGLLHPRFEVEKTYHAGVTGKLTEEKLQMLRDGLLLEDGMTAPAKVSLLPEREP 177 Query: 181 NQWYN------VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDL 234 + +T+ EGRNR+VRR++ AVG V L RVR+ + L KG+ RG L Sbjct: 178 GERVRGLTRAAITIHEGRNRQVRRMFAAVGCDVKSLKRVRFAGLTL-KGVARGQHRALTE 236 Query: 235 AQTNYLRELVE 245 + + L L Sbjct: 237 EEVSSLYRLAG 247 >UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_1464 n=4 Tax=Bacteria RepID=Y1464_AQUAE Length = 249 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 89/249 (35%), Positives = 129/249 (51%), Gaps = 10/249 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISV 59 M ++ K L+ AG SRR+ E +I GRV V+G++ + LG +V + +DG + Sbjct: 2 MEVRINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLGVKVNP-EVDIVEVDGKPVKP 60 Query: 60 RESAEQICRVLAYYKPEGELCTR-NDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 + R + KP L P+GR T+ + + + R VGRLD NT GLL+ Sbjct: 61 QRK-----RYIILNKPCCYLTQLGRSPDGRKTIEELIKDI-PERVFPVGRLDYNTEGLLI 114 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DGELANR++HP ++ + Y V G+VD L+ + +G++LEDG A I+ E Sbjct: 115 LTNDGELANRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIELEDGFAKPDNIRIVRYE 174 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 G N +T EGR V+R A G +V RL R+ G I L K L G W EL+ + Sbjct: 175 GKNTLLEITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIKLGK-LSPGKWRELNQGELA 233 Query: 239 YLRELVELP 247 L + V L Sbjct: 234 QLFKAVGLK 242 >UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C4P7_9PLAN Length = 352 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 111/302 (36%), Positives = 160/302 (52%), Gaps = 25/302 (8%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK LA G GSRR E IE GRVSVDG I +LG +++ I +DG + + Sbjct: 24 RLQKFLAATGLGSRRHCEEYIETGRVSVDGDVITELGAKIDP-ETQFIEVDGERVRL--- 79 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 Q R KP G LCT NDP GR V D P G R VGRLD N+ GL+L T D Sbjct: 80 --QPRRYYLLNKPSGFLCTNNDPAGRRRVVDLFPN-DGQRLFTVGRLDENSEGLILVTND 136 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA RL HP V R Y V+V G KL +L +GV+ ++G +K+ +G + Sbjct: 137 GELAQRLAHPRYRVARTYHVQVVGNPPREKLDELRKGVRFKEGVFRVSGLKYLKKQGKSA 196 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + +TL EG+NRE+RR+ +G +V +L+R+R+G + L K L G L + LR+ Sbjct: 197 FLELTLHEGQNREIRRMMARIGHKVIQLVRIRFGPLNLGK-LKTGESRRLSDTELKKLRQ 255 Query: 243 LVELP--PETSSKVAVEKDRRRMKANQIRRAVKRHS-------------QVSGGRRSGGR 287 L+ P+ + +K+ K R++V + S ++SGG+++GG+ Sbjct: 256 LLNEKHSPDIRHRKG-KKNAAPAKTRAPRKSVGKRSGERGAAAGKSVSERISGGKKTGGK 314 Query: 288 NN 289 + Sbjct: 315 RS 316 >UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=B2A4P2_NATTJ Length = 238 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 83/245 (33%), Positives = 137/245 (55%), Gaps = 11/245 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRE 61 +LQK ++RAG SRR+ E +I+ GRV+V+G++ +LG ++ +++DG I+ E Sbjct: 1 MRLQKFMSRAGIASRRKSEELIQQGRVTVNGQVITRLGTKINPD-TDTVKVDGEPITQEE 59 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 S + KP+ + +++DP+GR TV D + R VGRLD ++ GL+L T Sbjct: 60 SN----VYIMLNKPKDYITSKDDPQGRKTVMDLI--QVKERVYPVGRLDYDSRGLVLLTN 113 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGELANRLMHP + + Y V+V KL +L G+ LE+G ++ + N Sbjct: 114 DGELANRLMHPKYNIPKTYMVKVDKLPLQDKLDNLVNGIYLEEGLCKADHVEILDTK--N 171 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + L+EGR R++RR+ ++G++V L R G + L K L G + +L + + ++ Sbjct: 172 NILKIILSEGRKRQIRRMLASLGIEVKDLKRDSLGTLTL-KDLSEGNYRKLTKDEIDNIK 230 Query: 242 ELVEL 246 +L L Sbjct: 231 KLAGL 235 >UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1F236_ACIC5 Length = 406 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 97/283 (34%), Positives = 145/283 (51%), Gaps = 20/283 (7%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQK+LA AG SRR+ E +I AGRV V+G++ ++G + + IR+DG L+ E Sbjct: 24 ERLQKILASAGVASRRKAEELILAGRVQVNGQVVTEMGFKADAA-SDHIRVDGKLLQGPE 82 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLR--GARWIAVGRLDVNTCGLLLF 119 R KP+G + T +DPEGR TV + G R VGRLD + GLLL Sbjct: 83 K----LRYFMLNKPKGYVTTVSDPEGRHTVMEFFHGRGKGGERLYPVGRLDYASEGLLLM 138 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGP-------AAFKTI 172 T DG LAN L S VE+ Y V+V G+ + +L + G+ ++ G A + Sbjct: 139 TNDGALANTLTKASSHVEKVYLVKVSGRPTEEQLEQIRAGIMIDRGRPGEGRVMTAPAGV 198 Query: 173 KFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 + + N W+ +TL EGRNRE+R+++E G V ++ R+ YG + L + G EL Sbjct: 199 RMVR-DAENPWFELTLIEGRNREIRKMFEETGHFVEKIRRIGYGPLVL--DVEPGEVREL 255 Query: 233 DLAQTNYLRELVELPPETSSKVAVEKDRRRM--KANQIRRAVK 273 + + + LR + K A + R M KA R++ Sbjct: 256 NPEEVDSLRRAAQRKRAPKPKAATKTKRLTMLPKAKPARKSAT 298 >UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales RepID=A6LIA0_PARD8 Length = 495 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 77/240 (32%), Positives = 123/240 (51%), Gaps = 10/240 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ AG SRRE + I+ G V V+ + +LG ++ T + + + + Sbjct: 261 RLNKFLSNAGVCSRREADEFIQKGAVKVNDVVVTELGTKI--TRQDVVTFNEKPVQIESK 318 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP+ + T +DP+ R TV D + R VGRLD NT G+LL T D Sbjct: 319 V-----YIVLNKPKNCVTTSDDPQERLTVMDLVKNACQERIYPVGRLDRNTTGVLLLTND 373 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA++L HPS + ++ Y V + V + ++ G++LEDG I ++ E Sbjct: 374 GDLASKLTHPSFKKKKIYHVWLDKNVAIEDMEKIANGLELEDGEIHADAISYAS-EDDKS 432 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + GRNR VRR++E++G V++L RV + + K L RG W L+ + N LR Sbjct: 433 QVGIEIHSGRNRIVRRIFESLGYHVTKLDRVYFAGLT-KKNLGRGKWRYLNEREVNALRM 491 >UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2S0_9FIRM Length = 290 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 96/289 (33%), Positives = 141/289 (48%), Gaps = 11/289 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISV 59 M E+LQK+++ AG SRR E++I AGRV+VDG + LG + + +I +DG I Sbjct: 1 MEERLQKIISNAGAASRRAAEALIRAGRVTVDGLPVTALGGKYDAA-RHEIAVDGTPIRR 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 E + +KP G L T D GR TV D LP AR VGRLD +T GLL+ Sbjct: 60 NERR----FYILLHKPRGCLSTAYDDRGRRTVLDLLPHF-PARLYPVGRLDADTEGLLII 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG + L+HP E+++ Y V G V + L L G+ L+DG A ++ EG Sbjct: 115 TNDGAMTQGLLHPRFEIDKVYRAEVTGNVTEDGLTALRNGILLDDGRTAPARLRVLHREG 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + EGR R+VRR++ A+G +V RL RVR+ + L G+ G + L + + Sbjct: 175 ERTVVETIIHEGRKRQVRRMFAAIGCRVQRLCRVRFAMLTLD-GVSCGSFRHLTSDEIHE 233 Query: 240 LRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRN 288 L+++ + S + R + R Q R+ R Sbjct: 234 LKKIAGV---MHSGEDSRRRRGSCGNDGGRCGSGTRGQCDPARKDAARR 279 >UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6G3_MAGSM Length = 332 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 108/259 (41%), Positives = 162/259 (62%), Gaps = 10/259 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVR 60 + +LQK LA G SRRE E I+ GRVS++G++ +LG V+V ++ +DG L++ + Sbjct: 69 APRLQKWLAEQGLCSRREGEVWIQEGRVSINGEVVTELG--VKVAKRDRVAVDGQLVTPQ 126 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 S + + +KP+ +CTR+DP+GR T+FD + +R I VGRLD+N+ GL++ T Sbjct: 127 RSRDTA---IILHKPKSIICTRSDPQGRRTIFDLIENHGSSRLITVGRLDINSEGLIILT 183 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSR-GVQLEDGPAAFKTIKFSGG-- 177 +DG+LA+ LMHPSREV R Y V+ G + ++L + GV+LEDGP I G Sbjct: 184 SDGQLAHGLMHPSREVPRVYRVKTHGILLASQLEQIRTVGVRLEDGPTGPLEIVLDRGRE 243 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 +G N WY +TL EGRNREVRR+++ G+QV+RL+RV YG I L L G W + + + Sbjct: 244 QGNNSWYTITLREGRNREVRRIFDHFGLQVARLLRVGYGGISLG-NLEPGAWRPVTVDEW 302 Query: 238 NYLRELVELPPETSSKVAV 256 N L+++ + P S A+ Sbjct: 303 NMLQKISKRPIPGESAQAI 321 >UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RK43_PORG3 Length = 439 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 82/240 (34%), Positives = 130/240 (54%), Gaps = 10/240 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ AG SRRE + +IE G ++V+G++ +LG R+ T ++ + + Sbjct: 205 RLNKFLSNAGVCSRREADLLIEKGEITVNGEVVTELGRRI--TRQDEVIYKDKRVEIESK 262 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP+ + T +DPE R TV D + R VGRLD NT G+LL T D Sbjct: 263 V-----YVLLNKPKNCVTTSDDPECRTTVMDIVRYACPERIYPVGRLDRNTTGVLLITND 317 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA++L HPS + ++ Y V + V ++ ++ GV+L+DG I + + ++Q Sbjct: 318 GDLASKLTHPSFKKKKIYHVWLNKDVSIEDMQKIADGVELDDGEIHADAISYVKEDDLSQ 377 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + GRNR VRRL+E +G +V +L RV + + K LPRG W L+ + N LR Sbjct: 378 -VGIEIHSGRNRIVRRLFEHLGYRVVKLDRVYFAGLT-KKNLPRGKWRYLNEQEVNNLRM 435 >UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=Q65HX7_BACLD Length = 244 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 134/246 (54%), Gaps = 12/246 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQKV+A AG SRR+ E +I+ GRV+V+GK +LG V+V+ +I ++G + E Sbjct: 2 ERLQKVIAHAGIASRRKAEELIKEGRVTVNGKTVRELG--VKVSSSDRIEVNGVQLESEE 59 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 YKP G + D +GR V D ++ R +GRLD +T GLLL T Sbjct: 60 PV-----YFLLYKPRGVISAVKDDKGRKVVTDFFTEVE-ERIYPIGRLDYDTSGLLLLTN 113 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF--SGGEG 179 DG+ AN+LMHP E+ + Y ++ G L+ L RGV+LEDG A +K + Sbjct: 114 DGDFANKLMHPKYEINKTYVAKLKGIPLKENLKKLERGVRLEDGKTAPAKVKLLSLDKKK 173 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +T+ EGRNR+VRR++EA+G +V +L R Y + L GL G EL + Sbjct: 174 QTSIVQITIHEGRNRQVRRMFEAIGHEVLKLKREEYAFLNLA-GLKTGEKRELTPHEVKR 232 Query: 240 LRELVE 245 LR L E Sbjct: 233 LRALAE 238 >UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=C1DA59_LARHH Length = 703 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 126/247 (51%), Positives = 179/247 (72%), Gaps = 5/247 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +LQK LA AG GSRR+++ ++ AGRVS++G +A+LG RV PG K+R+D + +R Sbjct: 452 EMRLQKALALAGLGSRRDMDELVAAGRVSINGAVAELGARVR--PGDKVRVDSKPVLIR- 508 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 +++ RV+ Y+K EGE+ TR+DPEGR TVFDRLP+ R ++W+A+GRLDVNT GLL+FTT Sbjct: 509 WPDRLPRVIVYHKQEGEIVTRDDPEGRTTVFDRLPQTRSSKWVAIGRLDVNTSGLLIFTT 568 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE--G 179 G+LANR+ HPS EVEREYAVRV G++ ++++ + GVQL+DGPA+F+ I+ + Sbjct: 569 SGDLANRMTHPSFEVEREYAVRVLGKLTPEQMKETTAGVQLDDGPASFQFIREDDDKEDS 628 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +N WY V + EGRNREVRR++E G+ VSRL+RVR+G + LP L RG + EL+ + + Sbjct: 629 VNHWYRVGIREGRNREVRRMFEHFGLTVSRLMRVRFGIVTLPSRLKRGQFYELNELEVSK 688 Query: 240 LRELVEL 246 L L Sbjct: 689 LMHWSGL 695 >UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales RepID=C7H5G4_9FIRM Length = 294 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 97/288 (33%), Positives = 146/288 (50%), Gaps = 16/288 (5%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 E++QK++A G SRR E II GRV V+G K+GD+++ + +D I +++ Sbjct: 20 EERIQKIMAEQGLCSRRAAEQIIAEGRVKVNGHPVKVGDKMDPN-RDVLHVDDERIYIQK 78 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + Q LA YKP G + T +D GR TV + + + AR VGRLD ++ GLLL T Sbjct: 79 N--QQLYYLALYKPRGYVTTASDELGRKTVMELVSDI-PARLYPVGRLDKDSEGLLLMTN 135 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGEGI 180 DG A + HPS + + Y V V + D++++ +S GV L+DG I E Sbjct: 136 DGAFAQAVTHPSGGISKLYRVTVQPRADESQILKMSSGVVLDDGTKTMPCAINVVTDEPG 195 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +TL EG+NRE+RR+ EAVG++V RL R G + L L G + EL A+ + L Sbjct: 196 RTVMEMTLKEGKNREIRRMCEAVGLEVVRLKRNAEGVVKLG-MLKPGTYRELTKAEVSGL 254 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRN 288 R + A + + R A Q + A +R G + + Sbjct: 255 R----------AAAAKGRAQTRSAALQSKAAARRPKGPVGSGNAPAKR 292 >UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCEF2E Length = 296 Score = 272 bits (697), Expect = 7e-72, Method: Composition-based stats. Identities = 99/295 (33%), Positives = 139/295 (47%), Gaps = 19/295 (6%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISV 59 M E+LQK+L+ AG SRR E +I AGRV+VDG + +LG + + I +D I Sbjct: 1 MEERLQKILSNAGVASRRAAEDLIRAGRVAVDGVAVTELGRKFDPA-NHTITVDSKPIHS 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 E + KP G L T D GR TV D LP AR VGRLD +T G+LL Sbjct: 60 DEKR----FYILLNKPRGYLSTARDDRGRKTVLDLLPDF-PARLYPVGRLDADTEGVLLI 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG + L+HP E+++ Y V G V + L L RG+ LEDG A ++ + Sbjct: 115 TNDGAITQGLLHPRFEIDKVYHAEVAGPVTEGGLTRLRRGILLEDGMTASAKLRILRADK 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + EGRNR+VRR++ A+G +V L RVR+ + L +GL G + L + + Sbjct: 175 GYTVVETIIHEGRNRQVRRMFAAIGCRVCALRRVRFAMLTL-RGLSCGSFRHLTRDEIHE 233 Query: 240 LRELVEL-----------PPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRR 283 LR + + P + RR + A R G+R Sbjct: 234 LRIIAGVMSSEEDCRRGCRPSGHDGSGRSRGMRRARPAPREDAACRPQDDDHGKR 288 >UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae RepID=Q7MMX9_VIBVY Length = 347 Score = 272 bits (696), Expect = 1e-71, Method: Composition-based stats. Identities = 82/291 (28%), Positives = 141/291 (48%), Gaps = 18/291 (6%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +++L K ++ G SRRE + +IE GRV+++GK ++G +V PG + +DG ++ +E Sbjct: 6 AKRLNKYISETGFCSRREADKLIEQGRVTINGKQPEMGTKV--LPGDDVCVDGKPVAAKE 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRP-TVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 +A KP G CT P + D + R +GRLD + GL+ T Sbjct: 64 KP----VYIALNKPTGITCTT--ERNIPGNIVDFI--GHKKRIFPIGRLDKPSDGLIFLT 115 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG++ N+++ E+EY VRV + ++ +S GV + D + Sbjct: 116 NDGDIVNKILRAGNHHEKEYVVRVDKPITPEFIKAMSSGVNILDTVTLPCKVTQETKFS- 174 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + LT+G NR++RR+ EA+G +V +L RVR +I L G+P G W L + + Sbjct: 175 ---FRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNISLD-GIPNGKWRYLTDDEVTEI 230 Query: 241 RELVE--LPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNN 289 + E + E +S+V + R R + + +Q S RR+ + Sbjct: 231 LAMCEGSVGTEEASRVDAKGRRIRKATDAKLFDSREENQTSTARRNQKQRT 281 >UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7P2_SPHTD Length = 337 Score = 272 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 101/287 (35%), Positives = 141/287 (49%), Gaps = 11/287 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQ+VLA G SRR+ E +I AGRV+VDG++ +LG RV+ +IR+DG + Sbjct: 2 ERLQRVLAAHGVASRRKAEELITAGRVTVDGQVVRELGVRVDP-ERQEIRVDGKRLRPER 60 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 R + KP G + T +D GR TV D + R + GRLD T GLLL T Sbjct: 61 R-----RYIMLNKPPGYITTVSDERGRRTVMDLV--QVPERVVPAGRLDRPTAGLLLLTN 113 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+L R+ HP E+E+EY V V G L L RGV ++ ++ E Sbjct: 114 DGDLLFRITHPRYELEKEYEVLVDGHPPPEVLDQLRRGVTVDGERVVPDQVRPLRIEEAG 173 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + EGRNR VRR+ + VG V +L R R G I + +G+P G W +L + L Sbjct: 174 TVLRIVIHEGRNRIVRRMMDRVGYPVLKLTRTRIGPIHV-RGVPLGAWRDLTPGEVMQLL 232 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRN 288 E V L P ++ + E RR + R +R G R Sbjct: 233 EAVGLDPASAGRPLPEPGRRSDPGER-RGEPRRSGPTRRGERPAPSG 278 >UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y027_PEDHD Length = 472 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 134/243 (55%), Gaps = 9/243 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRES 62 +L + ++ +G SRR+ + +IEAG VSV+G++ +LG +++ ++R +G L+ + Sbjct: 238 RLNRYISNSGICSRRKADELIEAGVVSVNGEVVSELGHKIDPV-KDQVRYNGELLKREKK 296 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP+ + T +DP+ R TV + K R VGRLD NT GLLL T D Sbjct: 297 I-----YVLLNKPKDYITTTDDPQERRTVMQLVEKASRERIYPVGRLDRNTTGLLLMTND 351 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA++L HP + + Y V + + L + G++LEDG ++ + G G + Sbjct: 352 GDLADKLSHPKNGITKIYHVELSRSLSQGDLNKIQFGLELEDGIIKPDSVSYVTG-GSKR 410 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + G+NR VRR++E +G V +L RV YG++ K LPRG W L+ + ++ Sbjct: 411 EVGIQIHSGKNRIVRRIFEHLGYDVVKLDRVVYGNLT-KKDLPRGRWRYLEEHELIQIKH 469 Query: 243 LVE 245 L++ Sbjct: 470 LIK 472 >UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organisms RepID=A4CJ52_9FLAO Length = 303 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 92/241 (38%), Positives = 126/241 (52%), Gaps = 10/241 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A AG SRRE ++ I AG V+V+GK I ++G +V+ P ++R DG L+ Sbjct: 71 RLNKYIANAGICSRREADTYIAAGNVTVNGKTITEMGYKVQ--PTDEVRFDGRLLQRERK 128 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP + T D +GR TV + + + AR + VGRLD NT GLLLFT D Sbjct: 129 E-----YVLLNKPRNFITTTRDEKGRRTVMELISRASNARLVPVGRLDRNTTGLLLFTND 183 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA +L HP V + Y V + A L L G++LEDG + G + Sbjct: 184 GELAKKLTHPKHGVRKIYHVELDKTFKSADLGKLREGLELEDGRIEVDEASYIDG-ASKK 242 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 V L GRNR VRR++E +G QV +L RV + K LPRG W L + LR Sbjct: 243 EVGVELHSGRNRIVRRIFEHLGYQVVKLDRVVLAGLT-KKDLPRGHWRHLTEQEVINLRM 301 Query: 243 L 243 + Sbjct: 302 I 302 >UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria RepID=Q3MC44_ANAVT Length = 288 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 87/261 (33%), Positives = 125/261 (47%), Gaps = 9/261 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M +LQKVLA+ G SRRE E +I RV ++G +A+LG +V I +DG +S + Sbjct: 27 MEARLQKVLAQWGIASRREAEEMIRRSRVQINGTLAELGQKVNP-ERDIITVDGKSVSAQ 85 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLL 118 L KP G + T DP+GR TV D LP+ +G+ VGRLD + G L+ Sbjct: 86 RHHRLT--YLLLNKPTGVVSTCYDPQGRKTVLDLLPEELRKGSGLHPVGRLDAYSTGALI 143 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG+L +L HPS + + Y + V G +A L+ GV L+ + Sbjct: 144 LTNDGDLTFKLTHPSHNIPKTYQILVKGHPPEAVLKMWREGVLLDGRKTRKAKVSLLESL 203 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKG----LPRGGWTELDL 234 + L EGRNR++RR+ E +G V +L R G I L L G + L Sbjct: 204 AEKSRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAIGSIQLQTSKQPLLRAGNYRILRD 263 Query: 235 AQTNYLRELVELPPETSSKVA 255 + L+E ++ P KV Sbjct: 264 DEIRSLQEQLKHIPTQRIKVQ 284 >UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1D5Q2_MYXXD Length = 745 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 100/267 (37%), Positives = 140/267 (52%), Gaps = 8/267 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVR 60 +E+LQK LARAG SRR E +I AGRV+V+ K + +LG RVE L + +DG L++ Sbjct: 3 AERLQKYLARAGVASRRHAEELITAGRVAVNNKTVTELGSRVEPGTDL-VTVDGTLVTPP 61 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + YKP G + T +DP+GRPTV + + + G R VGRLD + G LLFT Sbjct: 62 DESS----YFLLYKPVGVVTTLSDPQGRPTVANYV-EETGKRLFPVGRLDYDAEGALLFT 116 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG LA++L HPS +V R Y +V G D A L L GV+LEDG A ++ Sbjct: 117 DDGALAHKLTHPSFQVPRTYLAKVKGAPDTATLDKLRGGVRLEDGMATPVSVSVFEAAER 176 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N W + + EGR ++RL AVG V RL R Y + + +GL G L ++ L Sbjct: 177 NTWLKIVVAEGRPHLIKRLCAAVGHPVVRLFRPSYAGVGV-EGLRPGELRPLKTSEVELL 235 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQ 267 + + + RR +A Sbjct: 236 NAVSDGKAAPPTGELRLPPRRHGRAAP 262 >UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B n=200 Tax=Bacteria RepID=RLUB_BACSU Length = 244 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 134/246 (54%), Gaps = 12/246 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQKV+A AG SRR+ E +I+ G+V V+GK+ +LG V+VT +I ++G + E Sbjct: 2 ERLQKVIAHAGVASRRKAEELIKEGKVKVNGKVVTELG--VKVTGSDQIEVNGLKVEREE 59 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 YKP G + D +GR V D + R +GRLD +T GLLL T Sbjct: 60 PV-----YFLLYKPRGVISAAQDDKGRKVVTDFFKNI-PQRIYPIGRLDYDTSGLLLLTN 113 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF--SGGEG 179 DGE AN+LMHP E+++ Y +V G LR L RG++LE+G A K + Sbjct: 114 DGEFANKLMHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGKTAPAKAKLLSLDKKK 173 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +T+ EGRNR+VRR++EA+G +V +L R Y + L +GL G EL + Sbjct: 174 QTSIIQLTIHEGRNRQVRRMFEAIGHEVIKLKREEYAFLNL-RGLHTGDARELTPHEVKR 232 Query: 240 LRELVE 245 LR L + Sbjct: 233 LRALAD 238 >UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae RepID=C8WAL4_ATOPD Length = 279 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 88/277 (31%), Positives = 137/277 (49%), Gaps = 25/277 (9%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 61 +LQ+ LARAG SRR E ++ +GRV+V+G++ +LG +V+ + + V Sbjct: 9 MRLQRFLARAGVASRRGSERLMTSGRVTVNGQVVTELGSKVDPLVDVV-----AVDGVVC 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 S + L KP G L T DP+GRPT+ D +P VGRLD++T GLL FTT Sbjct: 64 SIAEKPVYLMLNKPAGYLTTMKDPQGRPTIVDMVPTDTYPGLFPVGRLDMDTTGLLFFTT 123 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE--- 178 DG++A L+HPS+ V + Y V G + +L L G++LEDGPAA ++ + Sbjct: 124 DGQMAQELLHPSKHVWKHYVAHVVGTPTEEQLNRLREGIELEDGPAAPAEVEIISDDVKM 183 Query: 179 ---------------GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKG 223 N +VT+ EGR +V+++ A+ +V L R +G + L + Sbjct: 184 KNLLAPQGLGKTGGGEPNALVSVTIREGRKHQVKKMLLAIHHRVLALHRDTFGPLHLTR- 242 Query: 224 LPRGGWTELDLAQTNYLRELVELPPETSSKVAVEKDR 260 + G W L + L + P TS + + + Sbjct: 243 VKEGEWRLLTEEEVTALERTIGREPGTSPIMPLNTSK 279 >UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae RepID=A0JV58_ARTS2 Length = 406 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 103/244 (42%), Positives = 133/244 (54%), Gaps = 7/244 (2%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRES 62 +LQKV+A AG SRR E +I GRV VDGK+ +LG RV+ I +DG I + E+ Sbjct: 169 RLQKVMASAGVASRRVCEEMISEGRVEVDGKVVTELGVRVDPK-TAVIHVDGLRIQLDEN 227 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + + KP+G + T DP+GRP + D + G R VGRLDV T GLLL T D Sbjct: 228 ----MVYMVFNKPKGVVSTMEDPDGRPCISDFVRNTHGERLFHVGRLDVATEGLLLLTND 283 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRL HPS EV + Y V+V G L GV+LEDG A+ + K + Sbjct: 284 GELANRLTHPSYEVPKTYLVQVRGPFPQGIGAQLKAGVELEDGMASVDSFKLVDSTPGHV 343 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 V L G+NR VRRL++AVG V RL+RV+ G I L +G L + +L Sbjct: 344 LIEVVLHSGKNRIVRRLFDAVGFPVLRLVRVKVGPIGLG-DQRQGSIRNLGKQEVGHLLA 402 Query: 243 LVEL 246 V L Sbjct: 403 SVGL 406 >UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIA1_RHOM4 Length = 268 Score = 270 bits (690), Expect = 5e-71, Method: Composition-based stats. Identities = 97/254 (38%), Positives = 134/254 (52%), Gaps = 12/254 (4%) Query: 4 KLQKVLARAGHG-SRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + LARAG SRR+ + +I +G+V V+G++A+LG RV P + ++G + + Sbjct: 11 RLNRYLARAGVCPSRRKADELIASGQVRVNGQVAQLGMRV--GPDDIVEVNGVRVVPQTQ 68 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDR--LPKLRGARWIAVGRLDVNTCGLLLFT 120 A + KP + T +D GR TV D LP + VGRLD NT G+LL T Sbjct: 69 A----LYILMNKPHDTITTCDDERGRRTVLDLINLPPEQKNGLFPVGRLDRNTTGVLLLT 124 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELANRLMHP VE+ Y R V + L RGVQLEDGPA ++ + Sbjct: 125 NDGELANRLMHPRYRVEKIYVARTARPVKPEEAEQLRRGVQLEDGPARA--VQVAVNPAD 182 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + EGRNR+VRR+ EA+G +V +L R Y + KG+ G W L A+ L Sbjct: 183 PHEIALMIYEGRNRQVRRMLEAIGHEVVQLKRTHYAGLTT-KGVRPGKWRRLTDAEVRRL 241 Query: 241 RELVELPPETSSKV 254 L L P + K Sbjct: 242 YRLAGLKPPKTFKT 255 >UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD7 Length = 247 Score = 269 bits (689), Expect = 8e-71, Method: Composition-based stats. Identities = 90/246 (36%), Positives = 132/246 (53%), Gaps = 12/246 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISV 59 M E+LQKV+A++G+ SRR+ E +I+ G+V+V+G++ LG +V T I ++G LI+ Sbjct: 1 MEERLQKVIAQSGYTSRRKAEELIQQGKVTVNGEVVTVLGTKV--TKKDTICVNGKLINK 58 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 + +YKPE +CT +D R V D R VGRLD +T G L Sbjct: 59 EDKV-----YYLFYKPEKCVCTMSDEHDRTCVADYFAD-SNERVYPVGRLDYDTTGALFM 112 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSG--G 177 T DGE AN +MHPS +E+ Y V V G + A+ L +G+ LE I +G Sbjct: 113 TNDGEFANLIMHPSSHLEKVYEVSVKGLLTKAEKNQLEKGIYLEGVKTLPCEIAITGNDE 172 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 E + L EG+NR++++++E VG V RL R+ G I L KGL G + L + Sbjct: 173 EHGTTMLLIRLVEGKNRQIKKMFEEVGHPVKRLRRIMIGPIDL-KGLTPGTYRRLKPHEV 231 Query: 238 NYLREL 243 N LR + Sbjct: 232 NVLRTM 237 >UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX41_SYNWW Length = 239 Score = 269 bits (688), Expect = 9e-71, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 121/243 (49%), Gaps = 8/243 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K LA +G SRR+ E +I G+V V+ K + PG ++ G +I + Sbjct: 1 MRLAKYLAESGISSRRQAERLITQGKVKVNDKTITE-LAFTLKPGDRVEFAGKIIEQTDK 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 L +KP G + + DP+GRP V D L R VGRLD +T GLLL + D Sbjct: 60 I-----YLLLHKPAGYISSLADPQGRPRVIDLL-SAVNTRVFPVGRLDYDTEGLLLLSND 113 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GE +N + HP + ++Y V G V +R L +GV LEDG A ++ + Sbjct: 114 GEFSNLMTHPRYLIPKKYEAWVQGLVKPDTIRQLEQGVALEDGITAPARVRLLSSKKGQS 173 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + EG+ R+++R+ AVG +V++L R + L +G+PRG + L ++ L Sbjct: 174 LLELEIHEGKKRQIKRMCLAVGHRVTKLKRTALAFLTL-EGVPRGQFRFLTASEVESLIM 232 Query: 243 LVE 245 L Sbjct: 233 LAR 235 >UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5V220_ROSS1 Length = 624 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 106/282 (37%), Positives = 144/282 (51%), Gaps = 19/282 (6%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +E+LQKVLA AG SRR+ E I AGRV V+GK+ ++ +I +DG I Sbjct: 3 AERLQKVLASAGIASRRDCEEYIAAGRVMVNGKVVRIPGTRVDPEHDEILVDGRPIGKIH 62 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + +KP G + T +DP+GRPTV D + R VGRLD ++ GLLL T Sbjct: 63 HRT----YVMLHKPAGVVSTTDDPQGRPTVIDLV--NLEQRLFPVGRLDYDSEGLLLLTD 116 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGEL +L HPS +VE+EY V + A LR GV+L+ A ++ Sbjct: 117 DGELTQKLTHPSYQVEKEYRVLLNEAPSPAALRAWRTGVELDGVKTAPAWVELIERTPDG 176 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W V L EGR R++R + +G +V RLIRVR G + L LP G W L + + LR Sbjct: 177 AWVRVILHEGRKRQIREVARVLGYEVRRLIRVREGPLTLG-DLPSGTWRFLTDEEVDMLR 235 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRR 283 E E ++ +A Q RR + +QVSGGRR Sbjct: 236 EHAE------------RNAAVAEAEQPRRREQGETQVSGGRR 265 >UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7I2_9ACTN Length = 285 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 82/265 (30%), Positives = 128/265 (48%), Gaps = 25/265 (9%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISV 59 + +LQ+ LARAG SRR E +I AGRV V+GK + LG +V + +DG + Sbjct: 23 FTMRLQRFLARAGVASRRGSEKLISAGRVCVNGKQVRVLGTKVMPQ-YDHVTVDGKEYVL 81 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 L KP L T +DP G P V +P VGRLD +T G+LLF Sbjct: 82 GND----HVYLLLNKPSQVLTTMSDPFGFPCVASLVPCDDYPGLFPVGRLDSDTTGVLLF 137 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE- 178 TT+G + NRL+HPS V + Y + G++ ++++ LS+G+ LEDG + I+ + Sbjct: 138 TTNGNMGNRLLHPSHHVWKTYVALIEGKLTSSQMQKLSQGIMLEDGMTSPCFIRTITQDE 197 Query: 179 ------------------GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL 220 + + + EGRN +V+R+ + +G V +L R ++G + L Sbjct: 198 PCTHLDKNHSLFDDMRLNAASSLCELKIHEGRNHQVKRMLQEIGHPVIKLHRFQFGPLCL 257 Query: 221 PKGLPRGGWTELDLAQTNYLRELVE 245 +P G W + + L + E Sbjct: 258 NAQIPLGSWRMCTQQEIHDLETVCE 282 >UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSY4_SYNAS Length = 251 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 94/263 (35%), Positives = 143/263 (54%), Gaps = 13/263 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISV 59 M E+LQK+LAR+G SRR+ E +I GRVSV+ +I +LG + ++ +IR+DG LI Sbjct: 1 MEERLQKILARSGVASRRKAEEMIREGRVSVNSEIVRELGSKADI-ERDEIRVDGKLIC- 58 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 AE+ + KP G + +DP+ RP V LP+L G R VGRLD ++ GLLL Sbjct: 59 ---AEETKVYVMLNKPRGYVTALSDPQKRPLVIHLLPEL-GVRLFPVGRLDYDSEGLLLL 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG A R+ HP + + Y V++ G+++ A+ L +G++LEDG A + Sbjct: 115 TNDGGFAQRVQHPRYRISKTYRVKISGRLNAAEFNRLQKGLELEDGKFAPDEVALEEINP 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + W + ++EGRNR +RR +E +G +V RLIR D+ L L G + L + Sbjct: 175 KSSWLTMKISEGRNRVIRRAFEQLGHEVLRLIRTAVADLHLG-NLREGDYRLLKGWEVQQ 233 Query: 240 LRELVELPPETSSKVAVEKDRRR 262 L L P S + ++ + Sbjct: 234 L-----LTPRKRSGSKILPEKEK 251 >UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrionales RepID=C4XSY8_DESMR Length = 322 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 106/301 (35%), Positives = 149/301 (49%), Gaps = 18/301 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K LA AG SRR + +I AGRV+V+G + + G R++ + +DG +++ Sbjct: 10 RINKALASAGVCSRRHADDLIAAGRVTVNGAVVTEAGLRIDPA-RDALAVDGAPVNL--- 65 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKL-RGARWIAVGRLDVNTCGLLLFTT 121 A +I LA +K G + T +DPEGRPTVFD LP++ RG R VGRLD + GLLL TT Sbjct: 66 APEIPITLALHKKPGVVTTASDPEGRPTVFDGLPEVWRGKRLFPVGRLDFFSEGLLLLTT 125 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGP--AAFKTIKFSGGEG 179 DGELA RL HP V + Y V V GQV L ++RG++L +G A G Sbjct: 126 DGELALRLTHPRWHVPKRYRVTVRGQVTPDMLGTMARGMRLAEGERLAPVAARVVEGPAQ 185 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + L +G NR++RR+ +G+ V RL RV G + L LP G EL A+ Sbjct: 186 DRSILEMELHQGVNRQIRRMCRDLGLTVLRLARVSQGPVALG-DLPLGACRELTPAELAT 244 Query: 240 LRELVELPPET---------SSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNN 290 LR+ V L + K R + ++ SGG G + Sbjct: 245 LRQSVGLDDADVAPAPPRPRPTAEGDTKRPPRPARPPQAGGKRPATKASGGETETGPRRD 304 Query: 291 G 291 G Sbjct: 305 G 305 >UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae RepID=A4BW35_9FLAO Length = 305 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 81/241 (33%), Positives = 129/241 (53%), Gaps = 10/241 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A +G SRRE ++ IE G V V+G + ++G +V+ P +R DG I+ + Sbjct: 73 RLNKYIANSGVCSRREADTYIEHGSVEVNGNLVTEMGYKVQ--PDDVVRFDGTGITPEQK 130 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + + KP+ + T +D GR TV D + R VGRLD NT GLLLFT D Sbjct: 131 -----KYILLNKPKNYITTMDDDRGRKTVMDLISNATKERIYPVGRLDRNTTGLLLFTND 185 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA +L HP +V + Y + +++ L L V +E + + G+ ++ Sbjct: 186 GELAKKLTHPKHDVRKLYHASLDKKLELKDLEKLRGEVLIEGKKVFIDAVSYVDGQPKSE 245 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + GRNR VR+++E +G +VS+L RV + ++ + LPRG W EL + + L+ Sbjct: 246 -VGIEIHSGRNRIVRKIFEHLGYKVSKLDRVIFAELT-KRNLPRGRWRELTNQELSNLQM 303 Query: 243 L 243 L Sbjct: 304 L 304 >UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZD4_9DELT Length = 240 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 87/243 (35%), Positives = 125/243 (51%), Gaps = 8/243 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISV 59 M+E+LQK LARAG SRR+ E I GRV VDG+ +A++G ++ ++ DG + Sbjct: 1 MAERLQKFLARAGIASRRKAEEYIAQGRVQVDGRPVAQMGLTIDP-ERQQVTFDGQPV-- 57 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 + KP G + T DP+GRP V + + G R VGRLD++T G LL Sbjct: 58 --LPPSRKLTVLLNKPAGYVTTMADPQGRPIVTSLINE-PGLRLFPVGRLDLDTEGALLL 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DGELA ++HPSR++ R Y V G+ + L+ L RG+ LE I+ Sbjct: 115 TNDGELAQNILHPSRQINRTYHATVKGRPNREALQQLRRGIMLEGRRTWPARIRELRRNQ 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + V + EGR R+VR+++ A+ V +L RV YG + L LP G + L Sbjct: 175 ESTTLEVIIHEGRKRQVRKMFAAINHPVLQLKRVAYGGLRLGS-LPTGRYRRLSPEDLQL 233 Query: 240 LRE 242 L Sbjct: 234 LFR 236 >UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae RepID=C6X4T2_FLAB3 Length = 371 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 128/243 (52%), Gaps = 10/243 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVR 60 + +L K +A +G SRRE + +I G V V+G + ++G +V+ K+ DG I+ Sbjct: 138 TIRLNKYIANSGICSRREADELITQGLVQVNGAVVTEMGYQVQ--KTDKVIFDGQGITPE 195 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + KP+G + T D + R TV D + R VGRLD +T G++L T Sbjct: 196 KPV-----YVLLNKPKGYISTTKDEKARKTVMDLVANASPYRVFPVGRLDRSTTGVILLT 250 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG + +L HPS +++ Y V + ++D A L ++ GV+LE+G A +I + G+ Sbjct: 251 NDGHMTKKLTHPSFNMKKIYHVTLDRKLDRADLNAIAEGVRLEEGVAEVDSISYIEGKPK 310 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+ + + G NR VRR+++ +G +V L RV + + K + RG W L + N L Sbjct: 311 NE-VGIEIHIGWNRVVRRIFQRLGYEVEALDRVMFAGLT-KKNIKRGHWRILTELEVNNL 368 Query: 241 REL 243 + + Sbjct: 369 KMM 371 >UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytoplasma RepID=Q2NIZ3_AYWBP Length = 245 Score = 266 bits (681), Expect = 5e-70, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 128/251 (50%), Gaps = 13/251 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 61 ++LQKVLA A SRR+ E +I R+ V+GKI +LG +V + I +D I+ Sbjct: 2 QRLQKVLAYANVASRRKAEILILEKRIKVNGKIISELGTKV--SSSDIITLDDKPIT--- 56 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + KP G L T D + RPTV D + + R +GRLD NT GLLL T Sbjct: 57 --KATYSYFLLNKPNGFLSTAKDKKNRPTVLDLIEEASIQRLYPIGRLDFNTTGLLLITN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAF----KTIKFSGG 177 DG+L +L HPS + +EY V++ + L +G+ ++ A +K S Sbjct: 115 DGDLTQKLTHPSFCIPKEYHVKINACLQKKDLSTFCKGIIIDKKYLAVCKEIDILKISYM 174 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 + W + +TEG+NR+VR++ +A+G QV +L R RY + + + L G + L + + Sbjct: 175 PKPSTWLKLVITEGKNRQVRKMMQALGYQVLKLKRYRYSFLTI-ENLTIGAYRPLKIHEI 233 Query: 238 NYLRELVELPP 248 L+ L P Sbjct: 234 KKLKTLTTQIP 244 >UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q3J464_RHOS4 Length = 508 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 110/285 (38%), Positives = 156/285 (54%), Gaps = 12/285 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ KVL+RAG SRR+ E +IE GR++V+G+ + V P +I +DG ++ E Sbjct: 8 ERIAKVLSRAGIASRRDAERMIELGRIAVNGRTID-SPALNVGPKDRITVDGQPLAPPEP 66 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 A R+ YYKPEG + + +D +GR TVFD LP+ R ++VGRLD+N+ GLLL T D Sbjct: 67 A----RLWLYYKPEGLVTSASDEKGRETVFDHLPE-GMPRVMSVGRLDLNSEGLLLLTND 121 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GEL RL PS R+Y VRV G DA L L +G+ +E T+ +G N Sbjct: 122 GELKRRLELPSTGWLRKYRVRVKGNPTDADLEPLRKGITVEGESFQPMTVSLDRVQGANA 181 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W V L EG+NRE+RR A+G+ V+RLIRV YG L + L G E+ LR+ Sbjct: 182 WLTVGLREGKNREIRRAMSALGLTVNRLIRVSYGPFRLNE-LEPGMVEEVRP---KILRD 237 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRA--VKRHSQVSGGRRSG 285 + L P + + R+ A + R+ R ++ GG R Sbjct: 238 QLGLDPHADGEARPARGRKPEGAARPARSEGAARPARAEGGARPA 282 >UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXU0_DYAFD Length = 555 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 79/244 (32%), Positives = 123/244 (50%), Gaps = 11/244 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVR 60 +L + +A AG SRRE + +I +G++SV+GK + ++G +V P ++ ++ Sbjct: 322 EIRLNRYIANAGICSRREADDLISSGQISVNGKIVTEMGYKVR--PTDVVKYGKKALNPE 379 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + KP+ + T +DPE R TV D + R VGRLD NT GLLL T Sbjct: 380 K-----MVYILINKPKDYITTTDDPEERKTVLDIIAGACSERVYPVGRLDRNTTGLLLLT 434 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELA +L HPS +++ Y + + L GV+LEDG + + Sbjct: 435 NDGELAEKLTHPSSGIKKIYQAELDKPITTEDFEQLKAGVELEDGFIRPDEVGLVTPDA- 493 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 Q + + GRNR VRR++E +G +V +L R + + K LPRG W L + L Sbjct: 494 -QVVGLEIHSGRNRIVRRMFEHLGYEVQKLDRTVFAGLN-KKDLPRGKWRFLTEKEVIKL 551 Query: 241 RELV 244 + L+ Sbjct: 552 KFLL 555 >UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGQ8_EGGLE Length = 282 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 90/275 (32%), Positives = 136/275 (49%), Gaps = 38/275 (13%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 61 +LQK LARAG SRR E+++ AGRV+V+GK+ +LG +V+ ++ +DG ++ + + Sbjct: 11 MRLQKFLARAGAASRRGSENLMTAGRVTVNGKVVTELGSKVDPL-VDEVAVDGAVVRLAD 69 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + +KP G + T +DP+GR TV + +P R +GRLD +T GLLLF+T Sbjct: 70 GP----VTIMLHKPAGFVTTMSDPQGRRTVAELVPTERYPGLFPIGRLDFDTTGLLLFST 125 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI- 180 DGEL N L+HP V + Y V G+ + L L RG++L+DGP ++ G Sbjct: 126 DGELGNGLLHPKHHVTKRYLACVEGRPTERDLALLRRGIELDDGPTQPADVRVVEGGAAR 185 Query: 181 ------------------------------NQWYNVTLTEGRNREVRRLWEAVGVQVSRL 210 + + EGR R+V+R+ AVG V L Sbjct: 186 HAERLLEIPAAVPPRSSKEYAAVCEGRATRRSIVRLGIREGRKRQVKRMLAAVGHPVLAL 245 Query: 211 IRVRYGDIPLPKGLPRGGWTELDLAQTNYLRELVE 245 R +G + L LPRG W LD + L + + Sbjct: 246 HRDSFGPLELG-DLPRGAWRALDAEEVAALHQAIG 279 >UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQL4_9PLAN Length = 517 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 100/314 (31%), Positives = 148/314 (47%), Gaps = 34/314 (10%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRE 61 E+L KVLA AG SRR+ E++I+ GRV VDGK + +LG +V+ +I +DG + + Sbjct: 17 ERLHKVLAFAGIDSRRKCEALIQEGRVEVDGKFVTELGMKVDP-EHQEILVDGQRLKFGK 75 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 KP G L T DP GR V D +P+ R +GRLD + GL++ T Sbjct: 76 RV-----YYMLNKPPGVLSTNFDPAGRTRVIDMVPQ--DVRLFTIGRLDRASEGLIVVTN 128 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGELANRL HP E+E+ Y V V G + + + RGV L +G ++ + Sbjct: 129 DGELANRLAHPRYEIEKTYRVEVAGHPEPDAITFVRRGVHLAEGFVQPVSVVMKRKNKQS 188 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 V L EG+NRE+RRL +G +V RL R+ G + L + +P G + EL A+T LR Sbjct: 189 TTLEVILDEGKNREIRRLMAKIGHKVLRLKRIAMGPLRLGE-MPEGAFRELKSAETKALR 247 Query: 242 ELV------------------------ELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQ 277 + + PET + + + RA + + Sbjct: 248 DAAFGVGAGKPKKPKPRKSSTPGEREGPIFPETKTIAKGRAGAKPTETGAKSRATGKPTG 307 Query: 278 VSGGRRSGGRNNNG 291 + RS + + G Sbjct: 308 AASKDRSTYKKSAG 321 >UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SYF2_9FIRM Length = 239 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 115/245 (46%), Gaps = 9/245 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L GSR +++ I+ G VSV+G A D I+ +G + + Sbjct: 1 MRLDKFLVEMNIGSRSQVKQYIKKGMVSVNGTNAASSDMKINEDTDTIKYNGKQLCYSK- 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R KP G + D TV D L VGRLD++T GLL+ T D Sbjct: 60 ----YRYFLLNKPAGCVSATKDN-VHQTVIDLLNGENTKDLFPVGRLDLDTEGLLIITND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL-EDGPAAFKTIKFSGGEGI- 180 G LA+ L+ P+ + + Y + G VDD + +G+ + +D P ++K + Sbjct: 115 GRLAHHLLSPAHHIAKTYYADIDGYVDDQTISLFKQGIDIGDDTPTLPASLKIIEADRST 174 Query: 181 -NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + +T+TEGR +V+R+++AV + V+ L R+ G++ + LP G + EL + + Sbjct: 175 GSSRIELTITEGRFHQVKRMFQAVNMSVTFLKRISMGNLHIADDLPTGSYRELTPEEVSA 234 Query: 240 LRELV 244 L + Sbjct: 235 LSHTI 239 >UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroidetes RepID=D2QMI8_9SPHI Length = 638 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 80/243 (32%), Positives = 126/243 (51%), Gaps = 11/243 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVR 60 + +L + +A +G SRRE + +I G +SV+GK + ++G +V+ G ++ +++ Sbjct: 404 TTRLNRFIANSGVCSRREADELIAHGDISVNGKIVTEMGYKVK--EGDTVKYGTKVLNPE 461 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + KP+ + T DPE R TV + + R VGRLD NT GLLL T Sbjct: 462 R-----FVYVLLNKPKDYITTTEDPEERKTVMELVADAGKFRMYPVGRLDRNTTGLLLIT 516 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELA++L HPS + + Y V + + D + +G++LEDGP I + Sbjct: 517 NDGELADKLTHPSNNIRKIYQVELDKPITDEHFEAIKKGIELEDGPIKPDAISIVTPDAY 576 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + GRNR VRR++E+ G +V++L R Y + K LPRG W LD + L Sbjct: 577 --VVGIEIHSGRNRIVRRIFESFGYEVTKLDRTTYAGLT-KKELPRGKWRFLDPKEVVKL 633 Query: 241 REL 243 + L Sbjct: 634 KYL 636 >UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U325_9PROT Length = 387 Score = 263 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 110/270 (40%), Positives = 142/270 (52%), Gaps = 10/270 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 SE++ K LARAG SRR+ E I GRV VDG + V V I +D + E Sbjct: 8 SERISKRLARAGLCSRRDAERWIAEGRVKVDG-VMLTSPAVNVDDDSVILVDEKPLPEIE 66 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 R+ Y+KP+G + + DPEGR TVFDRLPK R + VGRLD+++ GLLL T Sbjct: 67 PP----RLWRYHKPDGLVTSNRDPEGRSTVFDRLPKDL-PRVVTVGRLDIDSEGLLLLTN 121 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG LA L PS R Y VRVFG +D+AKL +L +GV++E + N Sbjct: 122 DGGLARYLELPSTGWVRRYRVRVFGPLDEAKLDNLKKGVRIEGVEYGPIEVTIDKATRTN 181 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W V L EG+NRE+RR+ E VG+ VSRLIR YG L + +P GG E+ L+ Sbjct: 182 SWLTVALREGKNREIRRVMEHVGLTVSRLIRTTYGPFQLGE-VPPGGVEEIKR---RVLK 237 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRA 271 + + L S A K R RR Sbjct: 238 DQLGLAKGDDSGHAKAKPERTGTQPPGRRP 267 >UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UFV9_9RHOB Length = 354 Score = 263 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 113/290 (38%), Positives = 155/290 (53%), Gaps = 17/290 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ KVLA AG SRRE E +IE GRVSV+G+I + +V G +R+DG I R Sbjct: 17 ERIAKVLAHAGIASRREAERLIEKGRVSVNGEILRT-PAFKVMAGDDVRVDGESIGQRPP 75 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 RV Y+KP G L T +DP+GR TVF LP+ G R I+VGRLD+N+ GLLL T D Sbjct: 76 ----TRVWRYHKPVGLLTTHSDPQGRDTVFQTLPQDMG-RVISVGRLDLNSEGLLLLTND 130 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA L PS R Y VR +G D L +L G ++ + G N Sbjct: 131 GELARVLELPSTGWTRRYRVRAYGNASDKALAELENGTVVDGVVYGPVEVTVDRRTGANV 190 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W V + EG+NREVR++ ++VG+ V+RL+RV YG L L RG E+ ++ + LR+ Sbjct: 191 WLTVGIKEGKNREVRKVLQSVGLTVNRLMRVAYGPFQLGS-LKRG---EISESKLSVLRD 246 Query: 243 LVEL--PPET-----SSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSG 285 + P +T + D R A +A + H + G R+G Sbjct: 247 QLGKLYPLDTDGLPLKPGETAKPDTRTGTAKAKPKANRPHQKSGGKPRAG 296 >UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZE67_PLALI Length = 554 Score = 263 bits (673), Expect = 4e-69, Method: Composition-based stats. Identities = 101/286 (35%), Positives = 146/286 (51%), Gaps = 9/286 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQKVLA AG+GSRR E IE GRV++DG +A +LG RV+++ K+ +DG + V E Sbjct: 37 ERLQKVLASAGYGSRRACEEYIEMGRVTIDGVVAKELGVRVDLS-RQKVAVDGEKLRVEE 95 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 R ++KP G LCT +DP GR V D P G R VGRLD T GLL+ T Sbjct: 96 K-----RYFLFHKPAGVLCTNSDPAGRTRVIDCFPPNVG-RLFTVGRLDDGTEGLLIVTN 149 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+LA RL HP + R Y V G + L G+ +G ++ +G Sbjct: 150 DGDLAERLTHPKFGIPRIYRAVVAGNPSTEAINQLLEGLYFAEGRFRMSSVNRVKSQGSA 209 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +T+ EG+NRE+RRL VG +V +L R +G I L L RG +L + + L+ Sbjct: 210 TVLEITMREGQNREIRRLLARVGHKVMKLKRTHFGPIKLG-DLERGAHRKLSEEELSKLQ 268 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGR 287 +++ + + ++ R KA + S +G + R Sbjct: 269 DVITGKWKEPAPRKPQRTRDAGKATSAGGVTRASSSRAGSAGATPR 314 >UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q01SF5_SOLUE Length = 249 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 90/253 (35%), Positives = 136/253 (53%), Gaps = 9/253 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVR 60 E+LQK+L++AG SRR+ E +++ GRV+V+G I +LG + ++ I++DG L+ Sbjct: 3 EERLQKILSQAGVSSRRQAEKLMQEGRVTVNGSVITELGSKADLD-RDHIKVDGRLLKAP 61 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + +A KP+G + T +DPEGR TV D L +++ R VGRLD ++ GLLL T Sbjct: 62 KHQ----IYIALNKPKGTVTTVHDPEGRETVMDLLHRVK-ERVYPVGRLDYHSEGLLLLT 116 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELAN +M + +E+ Y V+V G + + GV L +K Sbjct: 117 NDGELANSIMSAATHLEKTYVVKVTGTLTAEQEEKFRTGVPLSGRRTLPAGLKLLSR-AE 175 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N WY V LTEGRN ++R ++ G V +L RVR G I L L G + LD L Sbjct: 176 NPWYEVKLTEGRNNQIRMMFRHFGKLVEKLKRVRIGPIELG-TLKTGAFRYLDEEDVAKL 234 Query: 241 RELVELPPETSSK 253 + ++ + +K Sbjct: 235 KRAIQRSSQKPAK 247 >UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3E8_9ACTO Length = 325 Score = 262 bits (671), Expect = 8e-69, Method: Composition-based stats. Identities = 101/256 (39%), Positives = 135/256 (52%), Gaps = 18/256 (7%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQKVLA AG SRR E II AGRVSVDG + + G RV+ + +IR+DG + Sbjct: 76 ERLQKVLAHAGVASRRACEEIIAAGRVSVDGVVVTEPGVRVDPS-RQEIRVDGSRVLTDP 134 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDR-----------LPKLRGARWIAVGRLD 110 + +KP G + T DP+GRPTV D L R + VGRLD Sbjct: 135 DV----ITVLLHKPAGVVTTMEDPQGRPTVADLAEQFISEHRTELEHPESVRLVHVGRLD 190 Query: 111 VNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFK 170 T GLLL + DG+LA+RLMHPS E+ + Y V GQV+ R L RG++L+DG A Sbjct: 191 TETEGLLLLSNDGDLAHRLMHPSFEISKTYVAIVEGQVEGWVPRKLRRGIELDDGLAQAD 250 Query: 171 TIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWT 230 + +TL G+NR VRR+ +AVG V+RL R + G + + GL G Sbjct: 251 RVVVKDAGPSGSIVEITLHSGKNRIVRRMLDAVGHPVTRLARTKLGPLGIG-GLRPGQMR 309 Query: 231 ELDLAQTNYLRELVEL 246 L + L++ V L Sbjct: 310 RLTGEEITALQQEVGL 325 >UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3ESK0_9BACT Length = 616 Score = 262 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 89/274 (32%), Positives = 137/274 (50%), Gaps = 8/274 (2%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +LQK+LA G SRR E +I G V V+G + + ++ +DG + V Sbjct: 19 RLQKLLAHRGLASRRNAEEMIRGGLVKVNGIVVTVPGTKVHPETDRVTVDGKTVPVEPEP 78 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + +YKP+G + T +DP+ + T+ D P++ I VGRLD+ + G+LL T +G Sbjct: 79 ----FLFLFYKPKGIVSTLHDPDEKTTLKDFFPQINP--LIHVGRLDIQSEGVLLLTNNG 132 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG-VQLEDGPAAFKTIKFSGGEGINQ 182 +LA R++HP E+ R Y V+V G V L L G V+L+ P ++ N Sbjct: 133 DLAQRILHPRYEIPRTYLVKVQGVVKPEHLDRLRSGKVRLDGRPVQPLELEQERLTETNS 192 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 WY +TLTEGRNREVRRL++A+ V +L R+ +G++ L GL G + + + L Sbjct: 193 WYRITLTEGRNREVRRLFDALHYFVLKLTRIAFGNLDLA-GLEPGEYRLVTPEEIALLLS 251 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHS 276 + S R+ A +RHS Sbjct: 252 GARWKRKESIPPPERSPRKPNPATPSSPDFRRHS 285 >UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0N6F1_9FIRM Length = 241 Score = 262 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 132/246 (53%), Gaps = 12/246 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQK +A +G+ SRR+ E +I G+V V+GK+ +LG +V+ G I ++G + Sbjct: 2 ERLQKAIAASGYTSRRKAEDLIVQGKVEVNGKVVTELGTKVK--QGDLITVEGKPLVGEN 59 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 +YKP+G +CT +D RP + D +++ R VGRLD +T GL++ + Sbjct: 60 KV-----YYVFYKPKGCVCTLDDEFDRPIITDYFTEVK-ERIYPVGRLDFDTTGLIIMSN 113 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGG--EG 179 DGE AN +MHP +E+ Y V + G + L L +GV LE IK E Sbjct: 114 DGEFANMIMHPRSHLEKIYEVSIKGLITGPTLNKLEKGVYLEGVKTLPCKIKVVDKDTEH 173 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + L EG+NR+V++++E+VG V RL RV G I L KGL G + L + Sbjct: 174 KTTMLKIKLVEGKNRQVKKMFESVGHPVKRLHRVSIGGINL-KGLTPGRYRILKPQEVKD 232 Query: 240 LRELVE 245 L++LV Sbjct: 233 LKKLVN 238 >UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0LG91_HALO1 Length = 553 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 105/290 (36%), Positives = 153/290 (52%), Gaps = 13/290 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVR 60 + +LQ+ L++ G +RR+ E +I +G VSV+G+ + +LG +V V ++ + G + Sbjct: 4 AIRLQRYLSQCGVAARRKAEELITSGVVSVNGQRVTELGTKV-VPGRDRVSVRGEAVYPE 62 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E + KP+G L DPE RPTV + L L AR + VGRLD + G+LL T Sbjct: 63 EP-----FYVLLNKPKGCLTAVTDPENRPTVMEYLHGL-PARVVPVGRLDFYSEGVLLLT 116 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGEG 179 DG+L+ RL P VE+ Y V+V QV + L L +GV+LEDG I GG Sbjct: 117 NDGDLSARLQSPRHHVEKTYHVKVRDQVTERHLEVLRQGVRLEDGTVTRPAQIDMLGGTK 176 Query: 180 INQ-WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 W +TLTEG++R++ R+ +G V +L RV +G + GL G EL A+ N Sbjct: 177 SRHDWLVITLTEGKSRQIHRMLGVLGYTVMKLQRVAFGGLTF-HGLRVGDARELTQAEVN 235 Query: 239 YLRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRN 288 LRELV LP +T ++ R + + RA R G R GGR+ Sbjct: 236 DLRELVGLPKDTVARGKWTSRREETERARRSRARARVGMSGG--RDGGRD 283 >UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actinobacterium RepID=D0U645_9ACTN Length = 237 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 95/248 (38%), Positives = 139/248 (56%), Gaps = 13/248 (5%) Query: 1 MSE-KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLIS 58 M++ +L K++A AG SRR + +IE GRV+V+G I ++G + + K+ +DG I+ Sbjct: 1 MAQMRLNKIIADAGITSRRGADELIEDGRVAVNGIIVREMGSKFDP-EMDKVMVDGETIT 59 Query: 59 VRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 LA +KP+G L T DPEGRP++ D + LR R VGRLD ++ GL+L Sbjct: 60 ----RTLTKSYLALHKPKGVLSTMFDPEGRPSLDDFI-DLRKERLFHVGRLDKDSEGLIL 114 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG+L R HPS +E+ Y + G + + L +GV+LEDG T K + Sbjct: 115 LTNDGDLTFRATHPSFGLEKTYIIEFDGILPTGVDKVLLKGVELEDGMGRVLTFKQLSPK 174 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 W V++ EGR +RRL EAVGV V RLIR ++G I L P G W +L+ + Sbjct: 175 ----WIEVSIHEGRYHIIRRLMEAVGVNVLRLIRTKFGPISLGDT-PEGRWRDLNDGELM 229 Query: 239 YLRELVEL 246 LR+ ++L Sbjct: 230 NLRKALDL 237 >UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes RepID=Q11YT0_CYTH3 Length = 562 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 122/245 (49%), Gaps = 12/245 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISV 59 +L K ++ +G SRRE + +I G V V+G + +LG +V+ PG ++ + +++ Sbjct: 327 FEIRLNKYISNSGICSRREADQLIIEGTVKVNGIVVTELGYKVK--PGDSVKYNNKVLNP 384 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 +S + KP+ + T D R TV + R VGRLD NT GLLLF Sbjct: 385 EKSV-----YVLLNKPKDFITTMEDENDRKTVMQLVANATKERIYPVGRLDRNTTGLLLF 439 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG-VQLEDGPAAFKTIKFSGGE 178 T DGELA +L HPS +V++ Y V + + + G + L DGP Sbjct: 440 TNDGELAQKLTHPSNKVKKIYEVELDKPITAEDFDKIVDGKIHLFDGPVKVDEAAIIS-- 497 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 + + + EGRNR VRR++E++G V +L RV Y + K +PRG W L + N Sbjct: 498 PSKKIIGIEIHEGRNRIVRRIFESLGYDVLKLDRVMYAGLT-KKNIPRGSWRYLTATEVN 556 Query: 239 YLREL 243 ++ L Sbjct: 557 KIKYL 561 >UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales RepID=Q47QM5_THEFY Length = 375 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 96/246 (39%), Positives = 128/246 (52%), Gaps = 9/246 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKL-GDRVEVTPGLKIRIDGHLISVRES 62 +LQK LA+AG SRR E +I AGRVSVDG+I + G RV+ +IR+DG + Sbjct: 136 RLQKALAQAGVASRRACEELIAAGRVSVDGQIVRRFGARVDPEKS-EIRVDGMRVV---- 190 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRG--ARWIAVGRLDVNTCGLLLFT 120 Q R A KP G + T DPEGRPT+ D ++ R VGRLD +T GL+L T Sbjct: 191 TSQNLRYYALNKPRGVVSTMFDPEGRPTIGDYAAQIGPIEERLFHVGRLDTDTEGLILLT 250 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELANRL HP +V + Y +V G V +R + +GV+L+DG + + Sbjct: 251 NDGELANRLTHPRYKVTKTYLAKVPGPVPRDVIRQIRKGVELDDGFVKVDSFRVIDNIEP 310 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + L EGR VRRL +AVG VS L R + G + L L G L + + L Sbjct: 311 KALVEIRLHEGRKHIVRRLMKAVGHPVSDLARTQIGPVGL-NNLKSGTIRALTSQEVSEL 369 Query: 241 RELVEL 246 + Sbjct: 370 YTAAGM 375 >UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A3CPQ5_STRSV Length = 242 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 75/250 (30%), Positives = 132/250 (52%), Gaps = 10/250 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A AG SRR+ E +I G+VS++G++ + V G ++ ++G I E Sbjct: 1 MRINKYIAHAGIASRRKAEELIRQGKVSINGQVVRE-LATNVKSGDRVEVEGQPIYNEEK 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 KP G + + +D +GR TV + LP+++ R VGRLD +T G+L+ T D Sbjct: 60 V-----YYLLNKPRGVISSVSDDKGRKTVVELLPQVK-ERIYPVGRLDWDTSGILILTND 113 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN- 181 G+ + ++HP E+++ Y RV G + LR L+RG+++E + + Sbjct: 114 GDFTDEMIHPRNEIDKVYVARVKGLANKEVLRPLTRGIEIEGRKTKPAVYEIIKVDPAKN 173 Query: 182 -QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +T+ EGRN +V+++++AVG+QV +L R R+G + L GL G + +L + + L Sbjct: 174 RSVVQLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGHLDLT-GLKPGEYRKLSKKEVSQL 232 Query: 241 RELVELPPET 250 L + Sbjct: 233 HTLAVTKTKK 242 >UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium RepID=C8NNL7_COREF Length = 329 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 128/246 (52%), Gaps = 9/246 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKL-GDRVEVTPGLKIRIDGHLISVRES 62 +LQKVLA+AG SRR E +I+ GRV V+G+I G RV IR+DG I++ E Sbjct: 90 RLQKVLAQAGVASRRHAEILIDNGRVEVNGRIVTTQGTRVNPN-SDVIRVDGVRININED 148 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLLFT 120 E KP G T +D GRP V D + + G R VGRLD +T GLLL T Sbjct: 149 LE----YFVLNKPRGMHSTMSDDLGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLT 204 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELANRLMHP EV + Y V G+ + L +G++LEDGPA ++ Sbjct: 205 NDGELANRLMHPKYEVRKTYLATVRGEAGPNLVTTLRKGIELEDGPAKADYVQIIDTFQG 264 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + EGR VRR+ + G V RL+R + + L + G L+ ++ L Sbjct: 265 KSLIRLEIHEGRKHIVRRMLDEAGFPVERLVRTKLHTVQLGEQ-KPGSLRALNASELASL 323 Query: 241 RELVEL 246 ++VEL Sbjct: 324 YKVVEL 329 >UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY40_9SPHI Length = 434 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 123/239 (51%), Gaps = 11/239 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A +G SRRE + +I G VSV+GK+ +LG ++V+ ++ G I+ + Sbjct: 203 RLNKYIANSGICSRREADDLIAKGLVSVNGKVVTELG--LKVSKFDRVVYQGKKINPEKP 260 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP+ + T +DP R TV + R VGRLD NT GLLLFT D Sbjct: 261 V-----YVLLNKPKDFITTTDDPLERKTVMALVGNACEERIFPVGRLDRNTTGLLLFTND 315 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA +L HPS ++++ Y V + + +D+ G+ LEDG ++ + + Sbjct: 316 GELAAKLSHPSNQIKKIYQVTLDKPLTHNDEKDILEGLTLEDGEVEVDDMQVLSVDR--K 373 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + G+NR VRR++ +G +V+ L RV Y + K L RG + L + L+ Sbjct: 374 ILGLEIHVGKNRIVRRIFAHLGYEVTALDRVMYAGLD-KKDLKRGNYRFLSEQEVIKLK 431 >UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C4Z9Y4_EUBR3 Length = 250 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 121/241 (50%), Gaps = 8/241 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K L+ G G+R E++ +I+ G+++++G +A + T ++ ++G ++ Sbjct: 13 RLDKFLSEMGLGTRSEVKKLIKTGQIAINGTVAAKPETKVDTDADEVSVNGRIVKY---- 68 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 Q + KP G + D TV D + VGRLD++T GLLL T DG Sbjct: 69 -QRYEYYLFNKPSGCVSATCDN-VHDTVMDYITDAVHDDLFPVGRLDIDTEGLLLITNDG 126 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL-EDGPAAFKTIKFSGGEGINQ 182 L++ L+ PS+ V + Y R+ G+V + G+ + E+ P + G Sbjct: 127 ALSHELLSPSKHVAKTYYARIDGEVTLDDIIRFKEGIDIGEEKPTKPAEL-VIKKSGSVS 185 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 +T+TEG+ +V+R++EA+G +V L R+ G + LP L G + L A+T+ L + Sbjct: 186 EIELTITEGKFHQVKRMFEALGKRVIYLKRISMGPLKLPDDLKTGTYRALTQAETDMLMQ 245 Query: 243 L 243 + Sbjct: 246 I 246 >UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepID=A2RP35_LACLM Length = 328 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 123/248 (49%), Gaps = 14/248 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K LA +G GSR E++ +++ GRV+V G+I + G ++ DG ++ +E Sbjct: 87 MRLDKFLAESGLGSRSEVKVLLKKGRVTVAGEIQRDGRFQVDKNSRQVAFDGQILDYQE- 145 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFTT 121 KP+G + D TV L + + VGRLD NT GLL+ T Sbjct: 146 ----YYYYLLNKPQGVVSATKDN-VFKTVVQLLSEKDFRKDIFPVGRLDKNTEGLLILTN 200 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTI---KFSGG 177 DG L + L P + VE+EY R+ G+V D + + G+ L++G A + K G Sbjct: 201 DGALGHDLTQPKKHVEKEYFARIDGKVTDEIINKFAEGLTLKNGEKARPGELFVEKTYKG 260 Query: 178 EGINQWY---NVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDL 234 + + W V + EG+ +V+R++EAV + V L R+R G++ L L G + L + Sbjct: 261 DSQSGWVSEIRVIIHEGKFHQVKRMFEAVEMYVLYLKRIRMGNLALDSDLALGAYRPLTI 320 Query: 235 AQTNYLRE 242 + L++ Sbjct: 321 EEIENLKK 328 >UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae RepID=Q1GFA6_SILST Length = 422 Score = 260 bits (664), Expect = 5e-68, Method: Composition-based stats. Identities = 100/286 (34%), Positives = 145/286 (50%), Gaps = 11/286 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ KVL+RAG SRRE E +I GRV+V+GK+ + VT +I +DG+ + E+ Sbjct: 63 RIAKVLSRAGVASRREAERMIAEGRVAVNGKVID-SPALNVTNLDRIVVDGNPLPEAEAP 121 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 R+ YYKP G + T +D +GR T+FD LP+ R + VGRLD+N+ GLLL T DG Sbjct: 122 ----RLWLYYKPNGLVTTTSDEKGRKTIFDALPEDL-PRVMTVGRLDLNSEGLLLLTNDG 176 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 + +L PS R Y VR+ G+ D + L +GV ++ TI +G N W Sbjct: 177 GVKRQLELPSTGWLRRYRVRINGRPQDHEFDVLRKGVVIDGERFQPMTISLDRQQGANAW 236 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 + L EG+NRE+RR E VG V+RL+R+ YG L L G EL +R+ Sbjct: 237 LTIGLREGKNREIRRAMEEVGYPVNRLLRISYGPFQLG-TLKEGEVEELRP---RVVRDQ 292 Query: 244 VELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVS-GGRRSGGRN 288 + L A +K R + + A + R G+ Sbjct: 293 LGLAAPEGDGEAKKKPTRPGRGPRNPGAKTAGKGIGAPNARPTGKG 338 >UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZI67_9SPHI Length = 391 Score = 260 bits (664), Expect = 5e-68, Method: Composition-based stats. Identities = 84/241 (34%), Positives = 125/241 (51%), Gaps = 11/241 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVR 60 +L + ++ +G SRRE + +IE G +SV+GK+ ++G +V+P ++ G + R Sbjct: 158 KMRLNRFISNSGVCSRREADKLIEMGMISVNGKVITEMG--FQVSPTDTVKY-GKRLLKR 214 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E + KP+ + T NDP+ R TV D + R VGRLD NT GLLLFT Sbjct: 215 EK----FVYVLLNKPKDFITTTNDPQDRKTVMDLIKNSCDERIYPVGRLDRNTTGLLLFT 270 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGE+A +L HPS +V++ Y V + + D L ++ GV LEDG AA I E Sbjct: 271 NDGEVAKKLSHPSHDVKKVYQVELDKPLKDEDLDSIAEGVILEDGYAAVDEIAILNPE-- 328 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 V + GRNR VRR++ + +V +L R Y + K + RG W L + L Sbjct: 329 RTLVGVEIHIGRNRIVRRIFNHLDYEVVKLDRTMYAGLN-KKNIDRGDWRYLSEKEVIRL 387 Query: 241 R 241 + Sbjct: 388 K 388 >UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK28_FIBSS Length = 243 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 91/248 (36%), Positives = 140/248 (56%), Gaps = 9/248 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRE 61 ++ K ++ +G SRR + ++ GRV V+G+ I+ LG +V+ T ++ +DG L+ + Sbjct: 1 MRINKYISLSGFASRRAADELVADGRVQVNGETISDLGHQVDET-KDQVTVDGKLLKL-- 57 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + +V+ ++KP G +CT++DP+GR TV+D LP + VGRLD+ + GLLLFT Sbjct: 58 PTNKKTKVIMFHKPAGCVCTKDDPQGRRTVYDYLPPGYH-NFKYVGRLDLQSRGLLLFTD 116 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL---EDGPAAFKTIKFSGGE 178 DGEL RL HPS EV R Y V + ++ + L GV + ED A + + Sbjct: 117 DGELLYRLTHPSFEVPRSYYVWTTRPLSESAAQRLVDGVDIRDPEDPDAQEEIAFATDVY 176 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 N + + L EG+NRE+RR+ A+G ++ L RV Y I L LP G + EL + N Sbjct: 177 LENGFAELVLIEGKNREIRRMMRAIGYEIRDLKRVSYCQIQLG-DLPAGEFRELTPNELN 235 Query: 239 YLRELVEL 246 LR+ V L Sbjct: 236 KLRQAVHL 243 >UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C0FY58_9FIRM Length = 261 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 116/240 (48%), Gaps = 8/240 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L G G+R E++ I++ +++V+G+I + +I G ++ E Sbjct: 25 MRLDKFLTEMGLGTRSEVKKILKTKQITVNGEIVTKPETKVAPENDQISYKGEPVTYCE- 83 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 +YKP G + D + TV D L + VGRLD++T GLLL T D Sbjct: 84 ----YEYYLFYKPAGCVTATED-QLHKTVMDYLTDTVRSDLFPVGRLDIDTEGLLLITND 138 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL-EDGPAAFKTIKFSGGEGIN 181 G LA+ L+ P++ VE+ Y + G V + + GV + E+ ++ E + Sbjct: 139 GALAHDLLSPAKHVEKTYYAVIDGVVTEKDVNSFENGVDIGEEKLTKPGKLRILKSEPES 198 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + +T+TEGR +V+R++EAVG +V L R+ G + L L G + L + L+ Sbjct: 199 E-IELTITEGRFHQVKRMFEAVGKKVLYLKRISMGPLQLTDDLKPGEYRPLTEEEITALK 257 >UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UUP0_RHOBA Length = 395 Score = 259 bits (663), Expect = 6e-68, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 140/285 (49%), Gaps = 13/285 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ ++LA AG GSRR+ E +I GRV VDG+ I +LG V+ K+R+DG+ + ++ Sbjct: 26 RINQLLASAGFGSRRQCEELIREGRVDVDGETITELGTTVDPD-LQKVRVDGNYLRPQK- 83 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 KP G + T DP GRP V D +P R VGRLD+++ GL+L T D Sbjct: 84 ----LVYYVVNKPVGIVTTNRDPRGRPRVIDLVPP--TERVFPVGRLDISSEGLILLTND 137 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA +L HP +++ Y V V G+V ++ + G+ + +G K Sbjct: 138 GDLAQKLAHPKFGIQKVYRVVVAGEVRGETMKKMREGIYIAEGLVQVDGAKIIKARTKAT 197 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + L EG+NRE+RR+ G +V +L RV G + L +PRG + +L + + LR Sbjct: 198 EMEIRLKEGKNREIRRILARFGHKVQQLRRVAIGPLKLG-DVPRGAYRKLTRDEVDKLRR 256 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGR 287 ++ R I+R S+ + +GGR Sbjct: 257 SID---AAEKAAKTAPPARPASKQSIKRRPGGASRNVAAKGTGGR 298 >UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterineae RepID=A4QE19_CORGB Length = 320 Score = 259 bits (663), Expect = 7e-68, Method: Composition-based stats. Identities = 94/246 (38%), Positives = 126/246 (51%), Gaps = 9/246 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPG-LKIRIDGHLISVRES 62 +LQKVLA+AG SRR E +I+ GRV V+ +I V V P IR+DG I + E Sbjct: 81 RLQKVLAQAGVASRRHAEILIDQGRVEVNDRIVTT-QGVRVNPNNDVIRVDGVRIHINED 139 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLLFT 120 E KP G T +D GRP V D + + G R VGRLD +T GLLL T Sbjct: 140 LE----YFVLNKPRGMHSTMSDELGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLT 195 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELANRLMHP EV + Y V G+ + + L GV+LEDGPA + Sbjct: 196 NDGELANRLMHPKYEVSKTYLATVRGEATNKLVSALRDGVELEDGPAKADFAQIIDVFQG 255 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + EGR VRRL++ +G V RL+R + + L G L+ ++ L Sbjct: 256 KSLLRIEIHEGRKHIVRRLFDELGFPVERLVRTKLHTVQLG-DQKPGSLRALNSSELTSL 314 Query: 241 RELVEL 246 ++V+L Sbjct: 315 YKVVQL 320 >UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7V9_9PLAN Length = 811 Score = 259 bits (663), Expect = 7e-68, Method: Composition-based stats. Identities = 100/285 (35%), Positives = 143/285 (50%), Gaps = 14/285 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISV 59 ++E+LQKVLA AG GSRR+ E +I GRV VDGK+ +LG RV+ IR+DG + Sbjct: 32 VAERLQKVLAAAGIGSRRDCEELITEGRVDVDGKVVTELGTRVDPV-KQTIRVDGEALRK 90 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 + KPEG + T D GR V D +P R AVGRLD + GL++ Sbjct: 91 PQRL-----YFVVNKPEGVVTTNYDQAGRTRVIDLVP--TDERVFAVGRLDRASEGLIIV 143 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DGE ANR+ HP V + Y VRV G+ A+L L RG+ L DG I+ Sbjct: 144 TNDGEFANRVTHPRYGVTKTYLVRVAGEASTAELAKLRRGIHLSDGFCKVDAIQVKRRHK 203 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + + L+EG+NRE+RR+ +G +V +L R+ G + L + LP G W LD + Sbjct: 204 QSTDMVIQLSEGKNREIRRILARIGHKVLKLKRLAVGSLKLGE-LPLGAWRWLDKQEIER 262 Query: 240 LRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRS 284 L L + + + + A K+ ++ +G R Sbjct: 263 LLSEARLRRKEN----KKGKSATATTADGKAAPKKPAKSAGAIRD 303 >UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC52_THENN Length = 240 Score = 259 bits (662), Expect = 9e-68, Method: Composition-based stats. Identities = 79/241 (32%), Positives = 134/241 (55%), Gaps = 14/241 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + L+ G G+R+E+ ++I+ GRV+V+ + L +++ +++DG +I + E Sbjct: 1 MRLDRYLSNRGIGTRKEVRALIKHGRVTVNDRTV-LDPAYKLSDKDVVKVDGKVIDLPEK 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + +YKP G + + DP T+ + LP ++G VGRLD + GLLL T D Sbjct: 60 V-----YILFYKPAGYVTSTRDPHSE-TIMEFLPDIKG--IFPVGRLDKDAEGLLLVTND 111 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGEGIN 181 GE A+R++ P +VE+EY V+V G++ + KL L RGV L DG A K ++ + N Sbjct: 112 GEFAHRVISPRWKVEKEYVVKVEGEITEDKLEKLRRGVSLRDGFFAKAKHVE----KISN 167 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + +TEG+ +V+R+ AVG++ L RVR G + LP+ + G + L + + Sbjct: 168 DTVKIVITEGKYHQVKRMMAAVGLKTIHLKRVRIGGLRLPQEMKPGEYRFLSEEEVRQVF 227 Query: 242 E 242 E Sbjct: 228 E 228 >UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae RepID=A5IKF7_THEP1 Length = 239 Score = 259 bits (662), Expect = 9e-68, Method: Composition-based stats. Identities = 75/249 (30%), Positives = 134/249 (53%), Gaps = 14/249 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + L+ +G G+R+E++ +I+ GRV+V+G++ L V+ + +DG ++ Sbjct: 1 MRLDRYLSNSGVGTRKEVKKLIKQGRVTVNGRVV-LDPGHSVSENDVVVLDGETVNFHRK 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + ++KP G + + DP T+ + LP L+G VGRLD + GLL+ T+D Sbjct: 60 V-----YILFHKPSGYVTSTKDPHSE-TIMEFLPPLKG--IFPVGRLDKDAEGLLIITSD 111 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGEGIN 181 G+ A+R++ P VE+EY V+V G+V + K+ L GV L DG A K ++ + N Sbjct: 112 GDFAHRVISPKWSVEKEYIVKVEGEVTEDKIEKLKNGVTLRDGFFAKAKCVE----KLSN 167 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + +TEG+ +++R+ AVG++ L R R G + LP+ + G + L + + Sbjct: 168 DTLKIVITEGKYHQIKRMTVAVGLRTVHLKRTRIGRLVLPEDMKPGEYRFLSEEEVKKVF 227 Query: 242 ELVELPPET 250 E + +T Sbjct: 228 EREDQKEDT 236 >UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium RepID=A5TWE7_FUSNP Length = 234 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 78/241 (32%), Positives = 125/241 (51%), Gaps = 7/241 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K L+ G SRR I+ IE GR++V+G A G +++ I IDG I + Sbjct: 1 MRINKFLSTLGIASRRAIDKYIEEGRITVNGNTATTG--MDINENDNIFIDGKKIKTSIN 58 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E++ KP L + +D GR TV D + R +GRLD T GL+L T D Sbjct: 59 EEKV--YFMLNKPLEVLSSSSDDRGRKTVVDLIK--TDKRIFPIGRLDYMTSGLILLTND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GEL NR++HP E+ ++Y +++ G++ ++ +L +GV L+DG I + Sbjct: 115 GELFNRVVHPKSEIYKKYYIKILGELKKEEIDELKKGVLLDDGKTLPAKISGIKYDKNKT 174 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 +++ EGRNR++RR+ E +V L R + G++ L LP G + EL + YL Sbjct: 175 SMFISIREGRNRQIRRMIEKFEYKVLMLRREKIGELALG-DLPEGKYRELTKQEVEYLYS 233 Query: 243 L 243 + Sbjct: 234 I 234 >UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2G3_SALRD Length = 249 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 130/246 (52%), Gaps = 10/246 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A AG SRR+ + ++E GRV +DG+ V G + +DG + E Sbjct: 11 MRINKYIAHAGVCSRRDADDLVEQGRVHIDGERVDQ-HGTCVREGQTVTVDGEEVYPLE- 68 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL--PKLRGARWIAVGRLDVNTCGLLLFT 120 L KP+ + T +DP+ R TV D + P+ + VGRLD NT G+LL + Sbjct: 69 ----FEYLLLNKPKDTISTTDDPKDRRTVLDAIGVPEDNPSGLFPVGRLDRNTTGVLLVS 124 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG+LA+RLMHP E+ + Y VRV V +L L RGV+L DG AA + + + Sbjct: 125 NDGDLAHRLMHPRYEIPKIYYVRVQDDVKPHQLDQLKRGVELSDGAAAADQVAYLDPQRK 184 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + L EGRNR++RR+ EA+G + +L R +Y + + L RG W L+ + L Sbjct: 185 TD-IALELHEGRNRQIRRMMEALGHTIVQLERAKYATLTTGR-LQRGEWRRLEPEEVREL 242 Query: 241 RELVEL 246 + V+L Sbjct: 243 YQRVDL 248 >UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2V6W2_SULSY Length = 244 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 119/248 (47%), Gaps = 10/248 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ G GSR +++ +I+ G V V+ +I K K+ ++ I +E+ Sbjct: 1 MRLDKFLSNQGFGSRSQVQKLIKKGFVKVNDEIVKDPSYHIDPMKDKVELEDEEILYKEN 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLR-GARWIAVGRLDVNTCGLLLFTT 121 KP G + D E PTV D L ++ VGRLD++T GLL+ TT Sbjct: 61 -----HYFMLNKPAGYITATEDEE-YPTVLDLFSDLPIASKLFPVGRLDIDTEGLLILTT 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLS-RGVQLEDGP--AAFKTIKFSGGE 178 DG+ +RL HP +E+EY V G + + + +G+ L+ +K Sbjct: 115 DGQFGHRLSHPKWNIEKEYYAIVEGDISNIDFSESENKGIYLKKEKYQTKPFKVKVLNTS 174 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 +TLTEG+ V+R+ + +G V L R+R G++ L + L G + EL + Sbjct: 175 KDKSEILITLTEGKYHIVKRIMQELGYPVLYLKRIRIGNLKLDEDLLPGEFRELTEKEIK 234 Query: 239 YLRELVEL 246 L++L+++ Sbjct: 235 DLKKLIKM 242 >UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales RepID=B4U4Q4_STREM Length = 266 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 10/248 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A AG SRR+ E +I+ G V+++G++ V G + I+G I E Sbjct: 27 MRINKYIAHAGVASRRKAEELIKRGLVTLNGQVVTD-LATTVKSGDLVEIEGSPIYNEEK 85 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 KP G + + +D +GR TV D LP+++ R VGRLD +T GLL+ T D Sbjct: 86 V-----YYLLNKPRGVISSVSDDKGRQTVIDLLPQVK-ERIYPVGRLDWDTSGLLILTND 139 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN- 181 G+ ++++HP E+++ Y RV G V LR L+RGV ++ + E Sbjct: 140 GDFTDKMIHPRNEIDKVYLARVKGVVTKESLRPLTRGVVIDGKKTKPARYRIIRVEPDKN 199 Query: 182 -QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +T+ EGR+ +V++++EAVG V +L R ++G + + +GL G L + + L Sbjct: 200 RSIVELTIHEGRHHQVKKMFEAVGHLVDKLSRTQFGSLDV-RGLKPGEARRLSKKEVSQL 258 Query: 241 RELVELPP 248 L Sbjct: 259 HHLASTRK 266 >UniRef50_P42395 Ribosomal large subunit pseudouridine synthase B n=5 Tax=Buchnera aphidicola RepID=RLUB_BUCAP Length = 257 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 114/255 (44%), Positives = 170/255 (66%), Gaps = 3/255 (1%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M+ K+QK+L+ G+GSRR IE +I+ G++S++G+ A +G + +I ID I V+ Sbjct: 1 MTAKIQKILSDLGYGSRRFIECMIKCGKISINGEKAIIGQYLNKKNPGEILIDKKKIIVK 60 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + + +VL Y KP GE+CTR+D + R TVFD+LPKL RW++VGRLD+NT GLLLFT Sbjct: 61 RN-KNLPKVLIYNKPIGEVCTRDDFQKRLTVFDKLPKLNLNRWVSVGRLDINTKGLLLFT 119 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIK--FSGGE 178 DG LAN+LMHP ++EREY +R+FG+++ K+ L +GV++ G +FK I + E Sbjct: 120 NDGTLANKLMHPRSQIEREYNIRIFGEMNKNKINILRKGVKIIHGYVSFKEIVPLYDKKE 179 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 G N+W+ L EG+NRE+R +++++ QV++LIRVRYG+I LPK L G W L+ Sbjct: 180 GKNKWFKGILCEGKNREIRLMFKSIQCQVNQLIRVRYGNIILPKNLKEGQWMMLNSIFLK 239 Query: 239 YLRELVELPPETSSK 253 L L+ E +K Sbjct: 240 KLYNLINFDKEIINK 254 >UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium RepID=B3DRY9_BIFLD Length = 256 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 132/247 (53%), Gaps = 9/247 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVR 60 S +LQK+LA+AG GSRR+ E +I GRV VDG+ + +LG RV+ ++R+DG + V Sbjct: 17 SIRLQKLLAQAGFGSRRKCEDMITEGRVEVDGELVTELGTRVDP-HKQQVRVDGSRVRVN 75 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + LA KP L +DP+GR T+ D + + R +GRLD ++ GL+L T Sbjct: 76 PN----HVTLALNKPRKVLSAMDDPKGRYTLRDIVGD-KYERIFHMGRLDYDSEGLILMT 130 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDL-SRGVQLEDGPAAFKTIKFSGGEG 179 DGEL+ +MHP EVE+ Y + G++ R L + GVQL+DG Sbjct: 131 NDGELSQHVMHPKYEVEKTYVATLEGKISGTVCRRLVTTGVQLDDGWIKLDHCAIIDSSR 190 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + V L G+NR VRR++ ++G V RL+R + G I L L G + L + Sbjct: 191 DHTMVKVVLHSGKNRIVRRIFGSIGFPVKRLVRTQIGPIKLG-DLKPGSYRVLSQTEVRS 249 Query: 240 LRELVEL 246 L + V L Sbjct: 250 LSKEVGL 256 >UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium RepID=C6JI84_FUSVA Length = 236 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 84/244 (34%), Positives = 126/244 (51%), Gaps = 9/244 (3%) Query: 1 MSE-KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISV 59 M E ++ K LA G SRRE++ +IE G + ++G+ A G ++V+ +I I G I Sbjct: 1 MEEMRINKYLASLGIASRREVDKMIEEGSIKINGEKATPG--IKVSDKDEIYIRGKKI-- 56 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 E + KP L + D GR TV D + R +GRLD NT GL++ Sbjct: 57 -EKHTEKKVYYILNKPLEVLSSSKDDRGRKTVVDLI--NCKERIFPIGRLDYNTSGLIIL 113 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DGEL NR++HP E+ +EY V+V G++ + + L GV+L+DG ++ E Sbjct: 114 TNDGELFNRIIHPKAEIFKEYYVKVLGEIKENNVELLKNGVELDDGITLPANVRILRREK 173 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 V + EGRNR+VRR+ + + V L R + G++ L L G + EL + NY Sbjct: 174 GKTELLVAIREGRNRQVRRMMDKINHPVITLRREKIGNLSLG-NLKLGEYRELTNDEINY 232 Query: 240 LREL 243 L L Sbjct: 233 LYSL 236 >UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vaginalis RepID=D2RB61_GARVA Length = 284 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 92/247 (37%), Positives = 129/247 (52%), Gaps = 9/247 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVR 60 + +LQK+LA AG GSRR+ E II GRV VD + + LG RV+ K+R+DG + Sbjct: 45 AIRLQKLLAEAGFGSRRKCEEIILDGRVEVDDELVTTLGTRVDPK-RQKVRVDGSRVKFN 103 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 LA +KP+ L +DP+GR T+ D + + R +GRLD ++ GL+L T Sbjct: 104 TK----LVTLALHKPKRVLSAMDDPKGRFTLRDIVGD-KYERIFHMGRLDYDSEGLILMT 158 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDL-SRGVQLEDGPAAFKTIKFSGGEG 179 DGEL+ +MHP EVE+ Y V G+++ R L S+GV LEDG Sbjct: 159 NDGELSQHVMHPKYEVEKTYIATVEGKINGMVCRRLVSQGVNLEDGWIKLDRCAIIDQNH 218 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + L G+NR VRR++ AVG V RL+R + G I L L G + L + Sbjct: 219 DTTMVKIVLHSGKNRIVRRIFGAVGFPVKRLVRTQIGPIKLG-DLKAGSYRVLSQTEVRS 277 Query: 240 LRELVEL 246 L + V L Sbjct: 278 LSKEVGL 284 >UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine synthase B n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C337CA Length = 254 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 78/252 (30%), Positives = 123/252 (48%), Gaps = 9/252 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M +++QK+L++ G SRR E +I R+ ++G+I LGD+ + L + +DG +I Sbjct: 1 MKKRVQKILSQLGIASRRHAEILILEKRLKLNGQIVLLGDKADPNHDL-LELDGKIIKSH 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLL 118 + + + KP G +C+ D + R V D LP +G VGRLD+N+ G LL Sbjct: 60 KKTQ--LFYILVNKPVGIICSCKDSQNRSIVMDLLPSNLRKGMGIHPVGRLDMNSSGALL 117 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG L RL HP + + Y V V G A L+D +GV L+ ++ Sbjct: 118 LTNDGNLTLRLTHPRYHLPKIYEVLVRGNFTQAILKDWRQGVVLDGKKTLPAYLEVINNN 177 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLP----KGLPRGGWTELDL 234 + LTEG+NR +RR+ + + V +L R G I L + G + L Sbjct: 178 RQYTNLKIILTEGKNRHIRRIAQKFELDVIKLHRTAIGPISLSTSKVDNVKLGHYRLLSS 237 Query: 235 AQTNYLRELVEL 246 ++ N L+ L +L Sbjct: 238 SEINTLKYLTKL 249 >UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1DTU8_SULAA Length = 247 Score = 256 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 82/241 (34%), Positives = 125/241 (51%), Gaps = 9/241 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRE 61 E+L K +A++G SRR+ + +I G+V V+GK K LG +++ + ++G ++ E Sbjct: 2 ERLNKYIAKSGICSRRKADELILEGKVKVNGKTVKNLGLKIDPK-KDVVEVEGKIVKPTE 60 Query: 62 SAEQICRVLAYYKPEGELCTR-NDPEGRPTVFDRLPKLRGA-RWIAVGRLDVNTCGLLLF 119 LA YKP G L D GR T+ D L +L+ + VGRLD N+ GLL+ Sbjct: 61 KK----IYLAIYKPVGYLSAVGKDRFGRKTLTDFLNELKIPYKLFPVGRLDYNSEGLLIL 116 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DGE AN++ HP E+++ Y V+V G+V L+ + G LEDG IK E Sbjct: 117 TNDGEFANKVAHPRNEIKKVYKVKVAGEVSQETLKKMEEGTILEDGFFKPDKIKMLKREE 176 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 W V + G+ R +RR ++ G +V RLIRV+ G I + L + L + Sbjct: 177 DGTWLLVEIHSGKKRIIRRFMDSFGHRVKRLIRVKIGSIDIG-NLKPFDYRYLSEKEIRS 235 Query: 240 L 240 + Sbjct: 236 I 236 >UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HC79_ANADF Length = 354 Score = 256 bits (655), Expect = 6e-67, Method: Composition-based stats. Identities = 110/289 (38%), Positives = 146/289 (50%), Gaps = 11/289 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK LA AG SRR+ E +I AGRV V+ + + LG +V+ L + +DG L+S E+ Sbjct: 13 RLQKYLAEAGVASRRKAEELILAGRVKVNARAVTVLGSKVDPARDL-VTVDGRLVSRSET 71 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 YKP G + T +DPEGRPT + L ++ R +VGRLD + G +LFT D Sbjct: 72 RS----YYLLYKPPGCVTTASDPEGRPTALEYLRGVK-ERVFSVGRLDFDAEGAVLFTDD 126 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRL HP R Y V+V G+ A L L GV+LEDGPA N Sbjct: 127 GELANRLAHPRYGHRRTYLVKVRGEPPPAALERLVAGVRLEDGPARALEAVPHERAERNV 186 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W V + EGR V+RL EAVG+QV RL R +G I + +GL G + L + L+ Sbjct: 187 WIRVVVGEGRFHLVKRLCEAVGLQVQRLYRPEFGGITV-EGLRPGQFRPLAPVEVRALKT 245 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 V L AV A + +++ RR G R G Sbjct: 246 AVGL---AGGAPAVAPRELPRAARRHGHGPPAPPELAPARREGERGEPG 291 >UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=Q1J0B9_DEIGD Length = 253 Score = 256 bits (655), Expect = 6e-67, Method: Composition-based stats. Identities = 101/245 (41%), Positives = 134/245 (54%), Gaps = 13/245 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQK LARAG SRR E +I AGRV+V+G+IA LG V P ++R+DG LI E+ Sbjct: 6 ERLQKRLARAGVASRRAAEDLITAGRVTVNGQIATLGRTV--MPDDEVRVDGRLI---EA 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 Q YKP G + T D GR V +P + VGRLD ++ GLLL TTD Sbjct: 61 PAQESVTFLLYKPAGYVTTARDEYGRRNVLSAMPPI--PGLHPVGRLDKDSEGLLLLTTD 118 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+L L HP E+ Y GQ A+LR L G++L DGPA + + + G + Sbjct: 119 GQLTLTLTHPRYGHEKAYRAWTAGQPVAAELRVLETGIELADGPARALSARPARGGAL-- 176 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 VTLTEGRNR+VRR+ +A+G V RL+R R G + L L G + L + L Sbjct: 177 ---VTLTEGRNRQVRRMLDAIGYPVHRLLRYRVGGLWLG-DLEPGEYRLLSPRDLHDLLH 232 Query: 243 LVELP 247 ++P Sbjct: 233 PAQVP 237 >UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A4J9G8_DESRM Length = 249 Score = 255 bits (653), Expect = 9e-67, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 118/248 (47%), Gaps = 11/248 (4%) Query: 1 MSE----KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHL 56 M+E +L ++L G G+R+EI+ +I+A +V V+G++A I + G + Sbjct: 1 MAENEKLRLDRLLNHMGLGTRKEIKKLIKAKQVMVNGELAMDPGLHIFPQRDHIEVQGEV 60 Query: 57 ISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL-PKLRGARWIAVGRLDVNTCG 115 I RE L KP+ L D V D L P VGRLD +T G Sbjct: 61 IEYRE-----YIYLMLNKPQDVLSATEDASD-KVVIDLLDPTYHSFNPFPVGRLDKDTEG 114 Query: 116 LLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFS 175 LLL T +G+LA++L+ P + V + Y V G V + + +RGV+L+DG Sbjct: 115 LLLLTNNGKLAHQLLSPKKHVPKTYYALVQGLVTEEDVAAFARGVELDDGYRTLPGQLKI 174 Query: 176 GGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLA 235 +T+ EG+ +V+R++EAVG +V L R+ G + L L G + EL Sbjct: 175 IRSAPQSEIELTIYEGKYHQVKRMFEAVGKRVIYLKRLSMGPLVLDNNLKPGEYRELTDE 234 Query: 236 QTNYLREL 243 + L+E Sbjct: 235 EIALLQEA 242 >UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6G735_9DELT Length = 300 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 92/277 (33%), Positives = 134/277 (48%), Gaps = 14/277 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK +A AG SRR+ E +I AG V V+G++ +LG RV ++ + G I Sbjct: 32 RLQKFMASAGVASRRKAEELITAGVVRVNGQVVRELGTRVFP-ERDRVTVRGEPIQAESK 90 Query: 63 AEQICRVLAYYKPEGELCTRN---DPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 KP+G + + D GRPTV L + R VGRLD ++ G+LL Sbjct: 91 V-----YYVLNKPDGVVSSAAGSVDERGRPTVISLLHGV-SERLYPVGRLDFHSRGVLLL 144 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF--SGG 177 T DG LA L HP V + Y V+ G++ + + + L GV+L+DG + Sbjct: 145 TNDGGLAEALTHPRHGVVKTYHVKFQGKLTEEQEQLLRDGVELDDGAITRPVAELFAFRE 204 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 N WY + + EG NR++RR+ EA+G V +LIRV GDI G+P G + L+ + Sbjct: 205 TATNVWYQIGIREGLNRQIRRMGEAIGHPVLKLIRVAIGDIT-ADGVPEGEFRALNATEV 263 Query: 238 NYLRELVELPPETSSKVAVEKDRRRMKANQIRRAVKR 274 L V+L PE + R R +A K Sbjct: 264 GQLLANVKLAPEGRRGRSGGAGRPRGGQRDRPKAKKS 300 >UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria RepID=Q3AVD5_SYNS9 Length = 247 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 91/249 (36%), Positives = 124/249 (49%), Gaps = 8/249 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++LQK++A AG SRR E ++AGRV+VDG++A LGD+ + L I +DG + Sbjct: 4 QRLQKLMAAAGLCSRRRGEDWLQAGRVTVDGRVASLGDQADPNSQL-IEVDGVPLI---- 58 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + Q RV KP G +C+ DP+GR TV D LP + VGRLD ++ G LL T Sbjct: 59 SVQEPRVFLLNKPVGVICSCRDPQGRATVLDCLPHQERSGLHPVGRLDADSRGALLLTDQ 118 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GEL RL HP + Y V V G LR G+ L+ + G + Sbjct: 119 GELTLRLTHPRYNHAKTYRVLVRGIPSSQALRRWRDGLLLDGRLTRPARVHCLRSRGASS 178 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 V L EGRNR++RR+ E +G V L RV I L L G W LD + + + Sbjct: 179 LLEVELKEGRNRQIRRVAELLGHPVIDLQRVAIDGIRLD-DLAEGCWRRLDAREWSTI-- 235 Query: 243 LVELPPETS 251 LV P + Sbjct: 236 LVGNAPRSM 244 >UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B6IXC3_RHOCS Length = 551 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 107/284 (37%), Positives = 140/284 (49%), Gaps = 11/284 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ K L+RAG SRR+ E I GRVSV+G++ V V PG +I +DG + E Sbjct: 31 ERISKRLSRAGLCSRRDAERWIAEGRVSVNGRVLDT-PAVTVRPGDRIVVDGQPVPEPEP 89 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 RV Y+KP+G + T D +GRPTVFD LP R ++VGRLD+ + GLLL T D Sbjct: 90 ----TRVWRYHKPDGLVTTARDEKGRPTVFDNLPPEL-PRVVSVGRLDLTSEGLLLLTND 144 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA L P R Y VRV G D+A++ L++G+ +E G N Sbjct: 145 GALARHLELPVTGWLRRYRVRVHGAPDEAQIAKLAQGIIIEGIEYGPIETVVDRSVGANT 204 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGW----TELDLAQTN 238 W V+L EGRNREVRR+ E +G+ VSRLIRV YG L K L G + Q Sbjct: 205 WLTVSLREGRNREVRRVMEHLGLPVSRLIRVAYGPFQLGK-LEPGQVEEVPRRVLRDQLP 263 Query: 239 YLRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGR 282 + A R + + R S GGR Sbjct: 264 GFFAAEDAAAADGRPAAGPVRMRYDRLPRAARDAAPPSATKGGR 307 >UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A n=134 Tax=Gammaproteobacteria RepID=RSUA_YERPE Length = 235 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 119/237 (50%), Gaps = 8/237 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L++ SR + + A RV++DG++ K G +++TP +R DG+ + Sbjct: 1 MRLDKFLSQQLGVSRALVARELRAKRVTIDGEVVKSGA-IKLTPEQDVRFDGNPLQQMVG 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R KP+G +C+ DP+ PTV L + + A GRLD++T GL+L T D Sbjct: 60 P----RYFMLNKPQGYVCSTEDPD-HPTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTDD 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+ ++R+ P E+ Y V + + D + + GVQL + + K + E Q Sbjct: 115 GQWSHRVTSPRHHCEKTYLVTLEHPLSDDTAQQFADGVQLYNEKSLTKPAQLDVIEP--Q 172 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +T++EGR +V+R++ AVG +V L R R GDI L L G + L + Sbjct: 173 RVRLTISEGRYHQVKRMFAAVGNRVIELHRERIGDITLDDDLAPGEYRPLTTEEIAS 229 >UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ05_LAWIP Length = 270 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 80/250 (32%), Positives = 129/250 (51%), Gaps = 8/250 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 S ++ K LA AG SRR ++ I G V+++GK I + G + ++ Sbjct: 23 SIRINKALANAGVCSRRNVDKYILNGEVTINGKSVTQPGIYIHPDKDIIALHGRRVDIQL 82 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLP-KLRGARWIAVGRLDVNTCGLLLFT 120 ++ L+ YKP + + DP+ R TV D +P + R VGRLD + GLLL T Sbjct: 83 KNKK-YYYLSMYKPIKVISSVKDPQNRLTVLDFIPFPWKNYRLYPVGRLDFFSEGLLLIT 141 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIKFSG 176 DGEL RL HP + + Y V + ++ + L+++S+G+ L DG PA + + S Sbjct: 142 NDGELTQRLTHPRYHISKVYHVLIRERILNTTLKNISKGITLSDGTKLPPAKVRVLS-SI 200 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 E W +TL +G NR++RR+ + +G+ + +LIRV+ G+I L L G L + Sbjct: 201 TETNTTWLEITLQQGINRQIRRMCKELGLTILKLIRVKQGNINL-SNLQPGEVRPLKNDE 259 Query: 237 TNYLRELVEL 246 L++ V+L Sbjct: 260 IKLLKKNVQL 269 >UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus RepID=Q38VQ0_LACSS Length = 239 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 69/246 (28%), Positives = 117/246 (47%), Gaps = 11/246 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ + L+ G+R+ ++ +++AGRV V K+ K + +VTP + +D I + + Sbjct: 1 MRIDRFLSHMNVGTRKTLKPLLKAGRVRVADKVIKE-AKYQVTPETVVYVDDEPIRYQTN 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL-PKLRGARWIAVGRLDVNTCGLLLFTT 121 KP G + DP+ TV D P VGRLD +T GLLL T Sbjct: 60 -----FYWLLNKPAGVISATTDPQ--KTVMDLFAPADYREDLFPVGRLDKDTTGLLLITN 112 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI- 180 DG+LA+ L+ P + V + Y ++ G V A + G++L D A + + Sbjct: 113 DGDLAHDLLSPKKHVAKTYRAKIAGVVTAADQAQFAAGLKLRDFDAQPAQLTILRTDTAR 172 Query: 181 -NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 V + EG+ +V+R++ AVG +V L R++ G + LP L RG + L + + Sbjct: 173 QESLIEVEIHEGKFHQVKRMFHAVGKEVLTLERIKMGPLSLPADLKRGQYRALTTTEIDA 232 Query: 240 LRELVE 245 L+ + Sbjct: 233 LQRATQ 238 >UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (class) RepID=D2B9T7_STRRD Length = 621 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 95/244 (38%), Positives = 131/244 (53%), Gaps = 8/244 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKL-GDRVEVTPGLKIRIDGHLISVRES 62 +LQKVLA+AG SRR E +I GRV+VDG++ + G RV+ + I +DG + Sbjct: 385 RLQKVLAQAGVASRRACEDMIGDGRVTVDGQVVRRFGARVDPAKQV-IHVDGKRLPTMPD 443 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 LA KP G + T +DP+GRP++ D + R R VGRLD T GL+L T D Sbjct: 444 ----LVYLAINKPIGVVSTMSDPDGRPSLADFVAD-RTERLFHVGRLDTETEGLILLTND 498 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRL HPS V+++Y +V G+++ R L +G++LEDG A + G Sbjct: 499 GELANRLTHPSYGVQKKYWAKVPGRIERDLGRRLKKGIELEDGIAKADSFTLVQEHGQQA 558 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 V L EGR VRR+ E VG V L R+ +G + L + L G L + + L Sbjct: 559 LVEVVLHEGRKHIVRRMLEEVGHPVIDLARIEFGPVKLGR-LKPGTVRALTVKEVGELYA 617 Query: 243 LVEL 246 V L Sbjct: 618 AVGL 621 >UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BUF1_DESAD Length = 251 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 128/249 (51%), Gaps = 6/249 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + +L K +A AG SRR + +++ G+V V+G++A ++ ++G L+ E Sbjct: 6 TIRLNKYIASAGIASRRGADELVQKGKVKVNGELADSPGIQVDPDNDRVEVNGKLVQHDE 65 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLP-KLRGARWIAVGRLDVNTCGLLLFT 120 ++ + + +K + T DP+GR TV D LP + R VGRLD + G+LL T Sbjct: 66 KSKDL--YILLHKTIETVTTAKDPQGRKTVLDLLPPDVINRRVFPVGRLDFYSEGMLLLT 123 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG--PAAFKTIKFSGGE 178 TDGEL NR+ HP + + Y V + G++ + +L + G+ LED A IK Sbjct: 124 TDGELCNRMTHPKWHLPKIYHVTIRGKLSEKELSVMQNGMYLEDKGELLAPVKIKAISEV 183 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 G Y + L +G NR++RR++ + RL RVR G I L L G W EL + Sbjct: 184 GETTKYEMELRQGINRQIRRMFGEFDKTILRLKRVRQGRIELG-ALKPGKWRELSAKELT 242 Query: 239 YLRELVELP 247 L++ +++ Sbjct: 243 LLKKDLKMK 251 >UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID=Q6G8H4_STAAS Length = 231 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 65/238 (27%), Positives = 113/238 (47%), Gaps = 10/238 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K LA G G+R E++ +++ G V+V+ ++ K KI + G LI E+ Sbjct: 1 MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIEN 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP+ + D TV D +P+ + VGRLD +T GLLL T D Sbjct: 61 V-----YIMLNKPKDYISATED-HHSKTVIDLIPEYQHLNIFTVGRLDKDTEGLLLITND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+ + LM P++ V ++Y V + + ++ GV L DG + + NQ Sbjct: 115 GDFNHELMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLSDGKVKPAILTYID----NQ 170 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +VT+ EG+ +V+R++ ++ +V L R++ D+ L L G + L + L Sbjct: 171 TSHVTIYEGKYHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKL 228 >UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae RepID=Q2K4S3_RHIEC Length = 312 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 80/247 (32%), Positives = 119/247 (48%), Gaps = 6/247 (2%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAE 64 L + L++ G+ SR + E +I RV+VDG+ +I +DG +I+ Sbjct: 72 LPRALSKLGYCSRTQAERLIAESRVAVDGRTVSDASAWVDLSTARISVDGLVIAAEAKI- 130 Query: 65 QICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGE 124 L KP G + TR DPEGRPTV+D L VGRLD + GLLLFT D E Sbjct: 131 ----YLMLNKPRGLVTTRQDPEGRPTVYDCLKNFDIPHLSPVGRLDKASEGLLLFTNDTE 186 Query: 125 LANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQWY 184 A L+ P V + Y V++ +DD ++ ++ G++ + + N W Sbjct: 187 FAQTLLDPLTHVTKTYHVQIDRLMDDEEIAAMTSGIRHDGELLTAAATRRLRQGDRNSWI 246 Query: 185 NVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRELV 244 V L EGRNR++RR+ EA+G + RL+RV G + L + LP+G L + LR Sbjct: 247 EVELDEGRNRQIRRMLEALGAECLRLVRVAIGGLELGE-LPKGAVRALTEGELQGLRRRA 305 Query: 245 ELPPETS 251 + Sbjct: 306 GMERARR 312 >UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7PFL3_CHIPD Length = 389 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 81/285 (28%), Positives = 149/285 (52%), Gaps = 17/285 (5%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAE 64 L K ++ G+ SRRE +++I +GRV ++ + A LG+R + PG + +DG LI+ + + Sbjct: 7 LNKFISDTGYCSRREADNLITSGRVLLNDRPAALGNRYK--PGDTVEVDGSLITAAKKEK 64 Query: 65 QICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGE 124 ++ LA KP G + T + + + + R +GRLD ++ GL+ T DG+ Sbjct: 65 RV--YLALNKPPG-ITTTTELHIKDNIISFV--NYPQRIFPIGRLDKDSEGLIFLTNDGD 119 Query: 125 LANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQWY 184 + N+++ + E+EY VRV +D L +S+GV + D ++ +G + + Sbjct: 120 IINKILRAANNHEKEYVVRVNKPIDTNFLHQMSQGVPILDTRTLPCKVQMTGRQ----TF 175 Query: 185 NVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRELV 244 +TLT+G NR++RR+ E +G V L RVR ++ L K LP G W L A+ +++E V Sbjct: 176 RITLTQGLNRQIRRMCEYLGYTVVGLQRVRIMNVRLDK-LPLGKWRYLSEAEIAFIKESV 234 Query: 245 ----ELPPETSSKVAVEKDRRRMKANQ-IRRAVKRHSQVSGGRRS 284 ++ E+ A K + ++ + +R ++ + G + Sbjct: 235 ADSTKVSGESKPSGARRKTAKPVEEKEHLRTGSTPKNKPATGHKR 279 >UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ55_9FIRM Length = 250 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 77/257 (29%), Positives = 129/257 (50%), Gaps = 23/257 (8%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A+ G SRR+ + +I+ GRV+V G I L V V I IDG I +++ Sbjct: 1 MRINKYIAKCGICSRRKADELIKEGRVTVGG-IPLLECGVNVDEDAVIAIDGRPIEIQKK 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 +A KP G +CT +D GR TV+D L + R +GRLD ++ GL+L T D Sbjct: 60 ----TVYIAMNKPCGYVCTVSDELGRRTVYDLLTDI-DERLFTIGRLDKDSEGLILLTND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLE--------DGP-------- 166 G+LA +L+ P R++E+ Y V V G ++ LS G+ ++ + P Sbjct: 115 GDLAQKLLSPKRKIEKNYEVVVRGVPGANDIKKLSGGITIDVEISQTKQNKPVKSIVKYH 174 Query: 167 AAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPR 226 I G + + ++ + EG+ R++R++++ +G +V +L RV++ I L L Sbjct: 175 TKPAKIFEIGQKQGDMKLSMIIKEGKKRQIRKMFDVIGHEVIKLKRVKFAGIELG-DLRP 233 Query: 227 GGWTELDLAQTNYLREL 243 G + L + L L Sbjct: 234 GEFRHLSEDEVRSLCSL 250 >UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A n=156 Tax=Gammaproteobacteria RepID=RSUA_ECO57 Length = 231 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 111/239 (46%), Gaps = 12/239 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A+ SR I RV+VDG+I + ++ P + DG+ ++ + Sbjct: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRN-AAFKLLPEHDVAYDGNPLAQQHG 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R KP+G +C+ +DP+ PTV L + + A GRLD++T GL+L T D Sbjct: 60 P----RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDD 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGP--AAFKTIKFSGGEGI 180 G+ ++R+ P E+ Y V + V D ++GVQL + ++ Sbjct: 115 GQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--- 171 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +T++EGR +V+R++ AVG V L R R G I L L G + L + Sbjct: 172 -TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 >UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG32_9BACT Length = 279 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 125/240 (52%), Gaps = 6/240 (2%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L + LA G GSRR++E I GR++V+G + + R + K+ +DG I + Sbjct: 41 RLNRYLADCGLGSRRKVEEFITTGRIAVNGNLVQDLSRQIIPGKDKVTLDGKPIQPAKEK 100 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 L KP G + ++ND GR TV+ LP +G + GRLD + GLL FT D Sbjct: 101 ----FYLILNKPRGYVVSQNDELGRKTVYSLLPP-KGKQLAYAGRLDKESEGLLFFTNDT 155 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 L N L HP +VE+ Y V + +++ +L L +GV++E G I Sbjct: 156 ALINLLTHPKNKVEKVYRVDINRPLNNMELNMLRKGVEIEGGKTLPAGIFVKSKNANGMT 215 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 + +TEGR R++R++ EAVG +V+ L R+++G + L K LP G W L+ + L L Sbjct: 216 LKIVITEGRKRQIRQMIEAVGAKVTYLKRLQFGPLKL-KDLPVGRWRLLEPGEVKALLSL 274 >UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium RepID=B8DUD9_BIFA0 Length = 257 Score = 253 bits (646), Expect = 6e-66, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 128/245 (52%), Gaps = 9/245 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK+LA+AG GSRR+ E +I GRV VDG+ + +LG RV+ ++R+DG I + Sbjct: 20 RLQKLLAQAGFGSRRKCEEMITDGRVEVDGELVTELGTRVDPK-RQQVRVDGSRIRLNPR 78 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 LA KP L T +DP+GR T+ D + + R +GRLD ++ GL+L T D Sbjct: 79 ----HITLALNKPRKVLSTMDDPKGRYTLRDIVGD-KYERIFHMGRLDYDSEGLILMTND 133 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDL-SRGVQLEDGPAAFKTIKFSGGEGIN 181 GEL+ +MHP EVE+ Y + G + R L GVQL+DG Sbjct: 134 GELSQHVMHPKYEVEKTYIATLEGHMSGTVCRRLVRTGVQLDDGWIKLDHCSIIDSNRDQ 193 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 V L GRNR VRR++ A+G V RL+R + G I L + G + L + L Sbjct: 194 TIVKVVLHSGRNRIVRRIFGAIGFPVKRLVRTQIGPIKLG-DIKSGSYRVLSQDEVRALS 252 Query: 242 ELVEL 246 + V L Sbjct: 253 KEVGL 257 >UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT7_ACIBL Length = 680 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 98/314 (31%), Positives = 160/314 (50%), Gaps = 35/314 (11%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVR 60 SE+LQK++A AG SRR+ E ++ AGRV+V+G++ +LG + + IR+DG + Sbjct: 3 SERLQKIIAAAGMASRRKAEELVTAGRVTVNGEVKNELGSKADP-ETDDIRVDGKPLKAE 61 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + +KP+G + T +DPEGR TV D + + AR VGRLD + GLLL T Sbjct: 62 Q-----LVYVLLHKPKGYVTTVSDPEGRETVMDLVKGI-PARLYPVGRLDYLSEGLLLLT 115 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL------------EDG--- 165 DGE+A +L H S V ++Y V+V G+ + ++++L GVQL E G Sbjct: 116 NDGEMAAKLTHASTHVPKKYLVKVSGEPTEEQIQELRNGVQLPPEQGHIHADPREGGRFG 175 Query: 166 ---------PAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYG 216 A I+ + EG N WY VTL EGRNR++RR+++ +G V ++ RV YG Sbjct: 176 GEKRRSTAVKTAPCKIELTR-EGDNPWYEVTLNEGRNRQIRRMFDFIGHHVEKIKRVEYG 234 Query: 217 DIPLPKGLPRGGWTELDLAQTNYLRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHS 276 + L + G + L+ A+ L++ E E + + + + R Sbjct: 235 PLKL--DVENGEFRLLNPAEVARLKKAAEGKHEAPRARDEKPRFAKARGERPAFGRGRSD 292 Query: 277 QVSGGRRSGGRNNN 290 + ++ ++ + Sbjct: 293 DRAPFQKGSYKDRS 306 >UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLU4_9FIRM Length = 230 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 78/241 (32%), Positives = 125/241 (51%), Gaps = 11/241 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A +G+ SRR + ++E G+V V+GK+A G ++++ ++ ++G I + E+ Sbjct: 1 MRINKFIANSGYCSRRNADLLLEQGKVFVNGKLATKG--IDISENDEVLVEGKKIKLEEA 58 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP G T V D + R VGRLD ++ GLLL T D Sbjct: 59 KK----YYLLNKPIGYSSTAKAQFQEKIVLDLID--SKERIYPVGRLDKDSFGLLLLTND 112 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA RL HPS VE+EY V+V + ++ L+ LS G+ LE + + + Sbjct: 113 GDLAFRLTHPSHNVEKEYIVKVDKTLKESDLKKLSSGIMLEGKITRKARFEMLDFK--SN 170 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 V L EGRNR++R++++ + V L R+ +G I L K L G + EL + YLR Sbjct: 171 IVKVFLKEGRNRQIRKMFKTLDYNVISLERIAFGKIKLGK-LKVGNYRELSKEEIEYLRS 229 Query: 243 L 243 L Sbjct: 230 L 230 >UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IHU4_BEII9 Length = 528 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 101/292 (34%), Positives = 155/292 (53%), Gaps = 12/292 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +++ KV+ARAG SRR+ E+ I GRVSV+G + V V+ I +DG ++ R Sbjct: 90 QRIAKVMARAGLCSRRDAEAWIAEGRVSVNGTVLTQ-PGVSVSDEDVILVDGEKLAARGH 148 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRG--ARWIAVGRLDVNTCGLLLFT 120 R+ ++KP G + T +DPEGRPTVFD L + R +++GRLD+NT GLLL T Sbjct: 149 ----TRLFLFHKPRGLVTTNHDPEGRPTVFDYLHERHPDMPRVLSIGRLDINTEGLLLLT 204 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG L+ L P+ R Y VR G D A L L +G+ ++ A + F +G Sbjct: 205 NDGGLSRLLELPTTGWVRRYRVRAKGTTDQAVLDQLRQGITIDGIHYAGMEVTFDREQGA 264 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N W ++L EG+NREV+R+ E +G++V+RLIR+ +G L LP G + +T L Sbjct: 265 NSWLTLSLREGKNREVKRVLEQIGLEVNRLIRLSFGPFQLG-DLPEGD---VTEVRTRVL 320 Query: 241 RELVELPPETSSKVAVEK-DRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 R+ + ++ V + D + RA K S+ +S +++ Sbjct: 321 RDQLGPSLAAAAGVDWTRHDEDAAEPAAPERARKTPSKTRTEGKSVTKSHGA 372 >UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B1M661_METRJ Length = 601 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 105/290 (36%), Positives = 150/290 (51%), Gaps = 16/290 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ K +ARAG SRR+ E++I AGRVSV+G+ R VT +I IDG + RE Sbjct: 86 ERIAKAMARAGIASRRDAETMIVAGRVSVNGETLTSPAR-NVTENDRILIDGEPMPSRER 144 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + R+ ++KP G + T DPEGR TVFD LP+ R +AVGRLD+NT GLLL T D Sbjct: 145 S----RLWIFHKPRGVVTTARDPEGRQTVFDVLPEDL-PRVVAVGRLDINTEGLLLLTND 199 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA + HP R Y VR G D A+L L++GV ++ +G N Sbjct: 200 GGLAKVIAHPDTGWLRRYRVRAHGDTDQAQLDRLAKGVTIDGMEYGPVEATLDRVQGDNV 259 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W + L EG+NREV+R+ E +G+ V+RLIR+ +G L L G ++ +T L++ Sbjct: 260 WLTLGLREGKNREVKRILEHLGLSVNRLIRLSFGPFQLG-DLEVG---LVEEVRTRVLKD 315 Query: 243 LVELPPETSSKVAVEKD-----RRRMKANQIRRAVKRHSQVSGGRRSGGR 287 + + V + R K +Q + RR+ R Sbjct: 316 QLGKSLAEQAGVDFDSPVREPIAPFGGTRPADRDAK-SAQPAPARRNAAR 364 >UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organisms RepID=A0NV51_9RHOB Length = 520 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 109/284 (38%), Positives = 145/284 (51%), Gaps = 12/284 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ KV+AR G SRRE E IE GRV ++GK+ V VTP K+ +DG + +RE Sbjct: 103 ERIAKVMARVGLCSRREAEVWIENGRVELNGKLLTT-PAVTVTPDDKVVVDGQPLPMRER 161 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R+ Y+KP G + T DPEGRPTVF+RLP R + VGRLD+NT GLLL T D Sbjct: 162 ----TRLWLYHKPRGLVTTNKDPEGRPTVFERLPDDL-PRVLTVGRLDINTEGLLLLTND 216 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA L P+ R Y VR FG+V L L G+ +E +G N Sbjct: 217 GGLARVLELPATGWLRRYRVRAFGKVTQPDLDTLKDGIAIEGVLYGAIEATLDKEQGNNV 276 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W V L EG+NREV+R+ E +G+ V+RLIR+ YG L LP G E+ + LR+ Sbjct: 277 WMTVGLREGKNREVKRVLEHLGLAVNRLIRLSYGPFQL-MDLPEGDVREI---RGRVLRD 332 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGG 286 + + + + + K GG R GG Sbjct: 333 QLGDALAEEAGADFDAPIFHAPKPEAEK--KPAGAKRGGSRDGG 374 >UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A9KPL1_CLOPH Length = 477 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 74/284 (26%), Positives = 143/284 (50%), Gaps = 14/284 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + ++ K L+ +G SRRE ++ I G V++DG++A +G +V PG K+ + +S E Sbjct: 18 AVRINKYLSESGICSRREADTRIAKGEVTIDGEVAVMGSKV--LPGQKVVLGKKEVSREE 75 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 ++A++KP+G +CT E + D + R +GRLD ++ GL+ T Sbjct: 76 K----MVLIAFHKPKGIVCTTEKREP-DNIIDYIK--YSQRIYPIGRLDKDSEGLIFLTN 128 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 +G++ N+++ E+EY V V + A L+ ++ GV + D T++ Sbjct: 129 NGDIVNKILRAGNHHEKEYIVTVNKPITAAFLKGMAGGVPILDTVTKPCTLEAID----K 184 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + LT+G NR++RR+ E +V++L+R+R ++ L + L GG+ L + ++ Sbjct: 185 VTFRIILTQGLNRQIRRMCEHFDYKVTKLVRIRIMNVNLGR-LKVGGYRNLTDKELEGIK 243 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSG 285 E +EL + + + + + N A + V+ G+R Sbjct: 244 EQIELSNNEALNLEPDDEFPIERVNVANIAKTHGNNVATGKRRT 287 >UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Z61_SOLUE Length = 264 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 85/258 (32%), Positives = 136/258 (52%), Gaps = 10/258 (3%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAE 64 L++V ++AG GSR + I G+V V+GK+ D K+ ++G + + Sbjct: 16 LERVFSKAGAGSRTDARKWISGGKVRVNGKVVLNPDHWVDPDHDKVTLEGKPLKAATKS- 74 Query: 65 QICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGE 124 + YKP+G L T DPEGRPTV+ L + VGRLD++T GLL+ T D + Sbjct: 75 ----YILLYKPKGYLTTYRDPEGRPTVYALLGDVGKW-LSPVGRLDLDTSGLLVLTNDND 129 Query: 125 LANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQWY 184 A R+ +P +V + Y ++ + D ++ L GV+L DGP +K + + Sbjct: 130 FAERITNPEHKVPKTYQIKAATVLSDEQIERLRAGVELSDGPTRPAEVKRLRDGPKHTFL 189 Query: 185 NVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRELV 244 +T+TEGRNR+VRR+ EAV +VS+L+R G + + + LP G W L + + LR Sbjct: 190 EMTITEGRNRQVRRMLEAVESKVSKLVRTAIGPVRIGE-LPIGKWRNLTADEVHELR--- 245 Query: 245 ELPPETSSKVAVEKDRRR 262 + +S A +K+R + Sbjct: 246 GQAAKKASGPARDKNRNK 263 >UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PP04_CHIPD Length = 516 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 9/241 (3%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAE 64 L K +A +G SRR+ ++ G+V+V+G++ +VT ++ I+ I+++++ Sbjct: 282 LNKYIAHSGLCSRRKAVDFVKEGKVTVNGELITE-PAFKVTAKDEVAINNRKINIQKN-- 338 Query: 65 QICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGA--RWIAVGRLDVNTCGLLLFTTD 122 + KP+G + T +DPEGR TV + + R VGRLD NT GLLL T D Sbjct: 339 --LVYILLNKPKGYITTTDDPEGRKTVMELIQDATTEEQRVYPVGRLDRNTSGLLLLTND 396 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA +L HP +++ Y V + + A ++ +GV LEDG A + + G Sbjct: 397 GELAQKLAHPKHNIKKIYHVGLNKPLTKAHFENILQGVTLEDGVANVDALGYVEA-GDKT 455 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + G+NR VRR++E + +V +L RV Y + K + RG W L + L+ Sbjct: 456 QVGIEIHSGKNRIVRRIFEHLEYEVEKLDRVTYAGLT-KKNINRGKWRFLTEKEIILLKH 514 Query: 243 L 243 Sbjct: 515 F 515 >UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6I1_RUMHA Length = 271 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 85/286 (29%), Positives = 134/286 (46%), Gaps = 16/286 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ AG SRRE + +IE RV VDGK A G ++V +I++DG I E Sbjct: 1 MRLNKYLSDAGVCSRREADRLIEEKRVLVDGKPAVQG--MQVEDFQEIKVDGKAIKREEK 58 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 +L ++KP+G CT N P + V + R GRLD ++ GLLL T Sbjct: 59 K----VLLVFHKPKGIECTAN-PNVKKNVISYI--NYPIRVYYAGRLDKDSEGLLLLTNQ 111 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GEL N++M E+EY V V V + L+ + GV + ++ + + Sbjct: 112 GELVNQIMKAGSYHEKEYLVTVDKPVTEEFLQSMREGVPVLGTITRKCKVE----KESEK 167 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + +TLT+G NR++RR+ +G +V +L R+R +I L LP G + E + + L+ Sbjct: 168 VFRITLTQGLNRQIRRMCNYLGYEVVKLKRIRIMNIELG-NLPIGSYREATKEELDELKR 226 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRN 288 + E + K ++ +K R R+ RN Sbjct: 227 QISEKAEKRQETDFHKGKKPVKNAGKYR--NPSKVRKQKRQEASRN 270 >UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZC3_ERYRH Length = 246 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 122/240 (50%), Gaps = 12/240 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK +A +G+ SRR+ E +I G+V V+G K+ + G ++V+ ++ ++G LI+V E Sbjct: 8 RLQKFIAMSGYCSRRKAEVLINEGKVKVNGIKVTEQG--LKVSTEDRVMVNGILINVEEK 65 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 KP G + + ND + R +V D +P R VGRLD T G L+ T D Sbjct: 66 K----VYYILNKPRGIVSSANDDKDRESVVDLVPN--DIRVFPVGRLDRETTGALILTND 119 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE--GI 180 G+ A + HP ++ + Y V V G++ L G+ +E I + Sbjct: 120 GDFAYYMTHPKFDLSKIYRVSVRGRLSYEVTNSLKEGITIEGVEYKGVEISRVKYDAAKD 179 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +++TL EG+NR++R+++ G+ V +L R + G + + + L G + EL + L Sbjct: 180 KTQFSITLHEGKNRQIRKIFAHFGLPVLKLHRYQIGYLDIDE-LKIGQYRELKPFEVKKL 238 >UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae RepID=B4RA72_PHEZH Length = 521 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 105/281 (37%), Positives = 153/281 (54%), Gaps = 14/281 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ K+LAR+G GSRR++E +I GRV+++G++ V+V PG + +DG ++ E Sbjct: 151 ERIAKLLARSGVGSRRDVERLIAEGRVAINGQVLTT-PAVKVEPGDILTVDGAVVGEPEP 209 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 RV Y+KP G + T DP+GRPTVF+ LP+ R I+VGRLD+N+ GLLL T D Sbjct: 210 V----RVFRYHKPVGLVTTHKDPQGRPTVFEALPEGL-PRLISVGRLDLNSEGLLLLTND 264 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGG----E 178 G LA L P+ V R Y R G++ +L L G+ +E + + Sbjct: 265 GGLARALELPATGVVRRYRARAHGRITQERLDTLKDGITVEGVRYGAIEARLDKAKEGHQ 324 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 G N W VTL EG+NREVRR+ EA+G++V+RLIR+ YG L L G E+ Sbjct: 325 GANLWLTVTLQEGKNREVRRVLEALGLKVNRLIRLSYGPFALG-TLDVGEIEEVGP---R 380 Query: 239 YLRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVS 279 +RE +E + ++ + R A + RRA Q Sbjct: 381 VIREQLEGHIPPENMPKGDRPQYRSPARKSRRAQAESRQAE 421 >UniRef50_B7L142 Pseudouridine synthase n=9 Tax=Alphaproteobacteria RepID=B7L142_METC4 Length = 674 Score = 251 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 102/291 (35%), Positives = 149/291 (51%), Gaps = 12/291 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ K +ARAG SRR+ E++IEAGRV+++GK+ + VT +I +D + RE Sbjct: 22 ERIAKAIARAGIASRRDAEALIEAGRVTLNGKVLT-SPAINVTDSDRITVDDEPLPARER 80 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R+ +KP G + T DPEGRPTVFD LP+ R +A+GRLD+NT GLLL T D Sbjct: 81 ----TRLWLLHKPRGVVTTARDPEGRPTVFDGLPEEL-PRVVAIGRLDINTEGLLLLTND 135 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA + HP R Y VR FG V L L +G+ ++ +G N Sbjct: 136 GGLAKVIAHPDTGWLRRYRVRAFGDVTQPDLDKLKKGLTVDGMEYGPIEATLDRAQGDNV 195 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W + L EG+NREV+R+ E +G+ V+RLIR+ +G L L G ++ +T L++ Sbjct: 196 WLTLGLREGKNREVKRILEHLGLSVNRLIRLSFGPFQLG-DLEVG---LVEEIRTKVLKD 251 Query: 243 LVELPPETSSKVAVEKDRRR--MKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 + + V E R ++A + GR G + G Sbjct: 252 QLGKNLAEQAGVDFESPVRETIAPFGSPKKATRATQAAPAGRGRQGARDEG 302 >UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8D3_9FIRM Length = 233 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 62/239 (25%), Positives = 101/239 (42%), Gaps = 9/239 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K LA +R E ++++ GRV V+G + K GD ++ + +DG L++ ++ Sbjct: 1 MRLDKYLAETAQCTRSEAKTMLAKGRVQVNGAVCKKGD-TQLKDTDTVAVDGALLTYQK- 58 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFTT 121 L KPEG + D TV D + R GRLD + G +L T Sbjct: 59 ----FVYLMLNKPEGVVSASTDKRD-TTVVDLVGDAYPRRELFPAGRLDKTSTGFVLLTD 113 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG A+ ++ P V + Y V + + + GV L DG A + + Sbjct: 114 DGGFAHDILSPRHHVSKTYTVTIDTPLTQEMCTGFAAGVTLADG-TALSPAEVTALSPDG 172 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 V L +G +++R++ G V+ L R G + L L G W EL + + Sbjct: 173 LTVRVVLRQGVYHQIKRMFGVYGAGVNALHREAIGGLALDAQLAPGQWRELSDEEVAKI 231 >UniRef50_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris MCS10 RepID=Q0AS26_MARMM Length = 372 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 105/291 (36%), Positives = 146/291 (50%), Gaps = 11/291 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 SE++ K LARAG SRRE+E +IE GRV VDGK +VT I +DG I Sbjct: 8 SERIAKFLARAGVASRREVERMIEGGRVKVDGKTLDT-PAFKVTGSEHIEVDGKRIE--- 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 ++ Y+KP+G + T DPEGR TVFD +PK G R I++GRLD+ + GLLL T Sbjct: 64 -PPAATKLWRYHKPDGLVTTHADPEGRETVFDAIPKDIG-RVISIGRLDLTSEGLLLLTN 121 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG LA L PS R Y R FG + ++ L+ L GV +E ++ G N Sbjct: 122 DGALARALELPSTGWTRRYRARAFGSISESALKILRAGVTVEGIKYGPMEVEVERETGSN 181 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W V + EG+NREVR+ +AVG++V+RLIR+ YG L + L +G + L Sbjct: 182 IWLEVGIREGKNREVRKALDAVGLRVNRLIRIAYGPFQLGQ-LEKGEIKSVPS---RVLH 237 Query: 242 ELVELPPETSSKVAVEK-DRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 + + + + R R+ ++ G R GG G Sbjct: 238 DQCGHLIDMGDTPTGQAIAKPRPANRAARKPGQKPDGKPGQRAMGGPGQPG 288 >UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYA4_9BACT Length = 638 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 100/297 (33%), Positives = 152/297 (51%), Gaps = 20/297 (6%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRES 62 +L K+LA G SRR+ E +I AG V+VDG++ + G RV+ + I +DG + Sbjct: 27 RLHKILAHRGVASRRKSEQLIAAGSVTVDGEVVTEPGTRVDPKHQV-ILVDGRPL----P 81 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E + +YKP+G + T DPEGRPT+ D P + + +GRLD T G LL T + Sbjct: 82 REPETFLFLFYKPKGVVSTLFDPEGRPTLRDYFPGIDP--LLHIGRLDFQTEGALLLTNN 139 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG-VQLEDGPAAFKTIKFSGGEGIN 181 G+L+ R++HP E+ R Y V++ G + A L ++RG ++L+ P + N Sbjct: 140 GDLSQRILHPRFEIPRTYLVKIQGGMSPAHLERMARGEIRLDGRPVVPLELVPERQTSTN 199 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 WY +TLTEGRNREVRRL+E + V +L+R +G + L GL G + + +T L Sbjct: 200 AWYRITLTEGRNREVRRLFETLNYFVLKLVRTAFGPLTLA-GLEPGEYRTVTPHETELL- 257 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGG--------RRSGGRNNN 290 L P++ K + RR R+ R S RR+ G++ Sbjct: 258 -LAGTRPQSLPKNLDSRFSRRDDDGGAPRSEGRRSGREEKVGQGSREPRRTTGKSAA 313 >UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F269_9PROT Length = 289 Score = 250 bits (638), Expect = 5e-65, Method: Composition-based stats. Identities = 87/251 (34%), Positives = 133/251 (52%), Gaps = 9/251 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ + LA G SRRE + I+AGRVS++G++ + V V G + +D L+ Sbjct: 43 ERINRYLAHCGLCSRREADRWIQAGRVSINGQLIE-APGVIVKSGDTVMVDDKLVE---- 97 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 +Q + Y KP+G+LC+R D + RP ++D + ++GRLD++T GLL+ T D Sbjct: 98 PQQGHTYILYNKPKGQLCSRLDKKKRPLIYDFID--VAPNVQSIGRLDMDTEGLLMLTDD 155 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG-VQLEDGPAA-FKTIKFSGGEGI 180 G L L HP+ +V REY RV G V+ L L RG + + G + + Sbjct: 156 GALTRALTHPAAKVPREYRARVAGIVELETLAKLRRGGMDIGRGDTSDAWEVTVDSESAG 215 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + W N+ + GR REVRR E G V RL+R R+G I L + +P+G W L+ + L Sbjct: 216 HTWLNIIILRGRWREVRRTLEECGHPVRRLMRTRFGPIKLDEDMPKGTWRALNRGEIRKL 275 Query: 241 RELVELPPETS 251 R+ V P + Sbjct: 276 RDRVINPDAKT 286 >UniRef50_Q87BI2 Ribosomal large subunit pseudouridine synthase B n=22 Tax=Bacteria RepID=RLUB_XYLFT Length = 476 Score = 250 bits (638), Expect = 5e-65, Method: Composition-based stats. Identities = 144/274 (52%), Positives = 174/274 (63%), Gaps = 11/274 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 + E+L KVLA+AG GSRR +E I G + V+G IA+LG + V G KI +DG V Sbjct: 25 LEERLHKVLAQAGLGSRRALEQRISNGLIKVNGDIAQLG--MSVKSGDKIELDGRSF-VA 81 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + RVL Y KPEGE+ TR DPEGRPTVF+ LP L+GARWIA+GRLD+NT GLLL T Sbjct: 82 SALTEPARVLIYNKPEGEVTTREDPEGRPTVFETLPVLKGARWIAIGRLDINTTGLLLLT 141 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQ-----VDDAKLRDLSRGVQLEDGPAAFKTIKFS 175 TDGELAN +MHPS E+EREY VRV V D L L+RGV LEDG A F TI+ Sbjct: 142 TDGELANAMMHPSSEIEREYVVRVRSPEGEEHVQDELLEQLTRGVMLEDGTAKFDTIERI 201 Query: 176 GGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLA 235 G + W+ V + EGRNREVRRLWE+ G QVSRL R RYG + LP+ L RG TEL Sbjct: 202 GNTDSHDWFRVVVKEGRNREVRRLWESQGCQVSRLKRTRYGSVLLPRELLRGQSTELPKT 261 Query: 236 QTNYLRELVELPPETS---SKVAVEKDRRRMKAN 266 Q LR ++L + + V RR KA Sbjct: 262 QVEALRTQLKLEKDMPLALTLQPVIGQRRSAKAT 295 >UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F n=90 Tax=Bacteria RepID=RLUF_SHIFL Length = 290 Score = 250 bits (638), Expect = 5e-65, Method: Composition-based stats. Identities = 86/297 (28%), Positives = 141/297 (47%), Gaps = 23/297 (7%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 S +L K ++ +G SRRE + IE G V ++GK A +GD+V+ PG ++++G LI RE Sbjct: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVK--PGDIVKVNGQLIEPRE 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + + + ++A KP G + T D E R + D + R +GRLD ++ GL+ T Sbjct: 64 AEDLV--LIALNKPVGIVSTTEDGE-RDNIVDFV--NHSKRVFPIGRLDKDSQGLIFLTN 118 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+L N+++ + E+EY V V + D +R + GV + +K Sbjct: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKEAPF--- 175 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + +TL +G NR++RR+ E G +V +L R R ++ L G+P G W +L + L Sbjct: 176 -VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLF 233 Query: 242 ELVELPPETSSKVAVEK-----------DRRRMKANQIRRAVKRHSQVSGGRRSGGR 287 +L+E + A K + R A S GR+ GR Sbjct: 234 KLIENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 >UniRef50_Q21MN5 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q21MN5_SACD2 Length = 324 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 83/320 (25%), Positives = 143/320 (44%), Gaps = 40/320 (12%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + +L K ++ +GH SRRE + +I + RV ++G + +LG VE G + +D + Sbjct: 6 AVRLNKFISDSGHCSRREADKLIASDRVKINGLLPELGAVVE--SGDVVTVDDQPLRASA 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + + +AY KP G CT D + + D + R +GRLD + GL+L T+ Sbjct: 64 ADKTDRIYIAYNKPFGITCTT-DQTVKGNIVDAID--HDERIFPIGRLDKPSEGLILLTS 120 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG++ N+++ ++EY V V + +SRG+ + ++ G Sbjct: 121 DGDIVNKILRAENAHDKEYIVTVNKNLAPNFAEKMSRGLPILGTITKPCKVRVIG----K 176 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + LT+G NR++RR+ + +G V +L+R R +I L K L G W L + + L Sbjct: 177 TTFKIILTQGLNRQIRRMCDYLGYDVKQLVRTRIMNIELGK-LKPGQWRRLTKVELDLLT 235 Query: 242 ELVEL----------------PPETSSKVAVEK-----------DRRRMKANQIRRAVKR 274 + P T +VA K R + K+ ++R K Sbjct: 236 KATSQSSKTAIKGANAKSSASPTATKPRVAKPKVKKEPKDLDKHGRPKNKSTGVKRGAKS 295 Query: 275 HSQVSGGR---RSGGRNNNG 291 + +GGR + GR N G Sbjct: 296 KNLTTGGRTGNKGAGRGNAG 315 >UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSZ6_9SPIO Length = 252 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 120/243 (49%), Gaps = 10/243 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +LQ LA AG SRR E IIE GRVSV+G + G +V G + DG + Sbjct: 14 EMRLQVYLAHAGVASRRACEKIIEEGRVSVNGTVVT-GMGSKVCAGDTVLFDGKPV---- 68 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 E + KP G +CT +D +GRPT D L + R +GRLD+ + G +LFT Sbjct: 69 HPEARKCYVLLNKPAGFVCTLSDEKGRPTAADLLKEAYSERLYNIGRLDMFSSGAILFTN 128 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+ A ++ HPS ++E+EY + L RG++++ ++ Sbjct: 129 DGDFAAKIEHPSAQIEKEYVIETTQDFPPELLTRFERGIRVDGIFYKCRSAAAVNRRK-- 186 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + L EG+NRE+RR+ ++ + RL+RVR G++ L L G + +L + + L Sbjct: 187 --LRIVLVEGKNREIRRVLDSFNCTIKRLVRVRIGNLELG-TLKAGEFRDLTVQERQALL 243 Query: 242 ELV 244 L Sbjct: 244 GLA 246 >UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine bacterium 105 RepID=Q6SI36_9BACT Length = 255 Score = 249 bits (637), Expect = 7e-65, Method: Composition-based stats. Identities = 92/250 (36%), Positives = 125/250 (50%), Gaps = 12/250 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVR 60 +LQKVLA AG SRR E +IE GRV+V+G+ + KLG + + IR+DG + Sbjct: 5 KVRLQKVLASAGISSRRAAERLIEVGRVTVNGRSVTKLGAKADPDLDD-IRVDGRKVKTG 63 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 L KP G + TR DPEGR T+ + + +R VGRLD ++ GL++ T Sbjct: 64 RPR----IYLLVCKPRGYVTTRFDPEGRRTILNLISNVREY-VYPVGRLDYDSEGLVILT 118 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGG--- 177 DG LA RL HP VER Y VRV G A + L GV + A ++KF Sbjct: 119 NDGTLAARLTHPRYGVERVYEVRVRGVPSQAAIDSLRHGVLINGRRTASSSVKFLRRLKA 178 Query: 178 -EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 N V + EGRNR+VR++ EA+G V RL R + G + L G L ++ Sbjct: 179 KSSENALLRVAIREGRNRQVRKMCEAIGHPVIRLRRTQIGPLR-DSSLKVGKHRLLTTSE 237 Query: 237 TNYLRELVEL 246 L E+ Sbjct: 238 VAALMRASEV 247 >UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=A1UU09_BARBK Length = 499 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 95/231 (41%), Positives = 127/231 (54%), Gaps = 7/231 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 SE++ K LARAG SRR+ E +I AGR++V+G + + V P I +D I E Sbjct: 44 SERIAKRLARAGIASRRDAEMMIIAGRIAVNGTVVTT-PVLNVIPSDHITVDEIPIPPIE 102 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 R+ Y+KP G + T DPEGRPTVFD LPK R ++VGRLD+NT GLLL T Sbjct: 103 R----TRLWLYHKPSGLVTTNRDPEGRPTVFDNLPK-EMPRVVSVGRLDINTEGLLLLTN 157 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG LA L P R+Y VR G++ ++L L G+ ++ +G N Sbjct: 158 DGGLARVLELPLTGWVRKYRVRAHGKIKQSELDKLKNGIAIDGIFYGSIDASIDREQGSN 217 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 W +V L EG+NRE++ A+G+ V+RLIRV YG L L G EL Sbjct: 218 VWLSVALREGKNREIKNFLGALGLSVNRLIRVSYGPFQL-SDLEEGAVREL 267 >UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LG30_SYNFM Length = 250 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 98/253 (38%), Positives = 131/253 (51%), Gaps = 8/253 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVR 60 +LQKVLA+AG SRR E +I GRV V+G + +LG +V+ +I +D I++ Sbjct: 3 KVRLQKVLAQAGIASRRGAEEVIRQGRVVVNGIVVTELGVKVDP-HADRITVDRVTIAMV 61 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 ES L +KP + T DP+GR TVFD +P GAR VGRLD + GLLL T Sbjct: 62 ESR----VYLLLFKPRCCVTTARDPQGRKTVFDFVPDA-GARLFPVGRLDFDAEGLLLLT 116 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG LANRL HP V + Y V G A L L GV LE+G A + G Sbjct: 117 NDGLLANRLQHPRYGVTKTYEVAAMGHPTPAALDRLRTGVMLEEGMTAPAEVTVIGSSPR 176 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + L +G NR+++R+ EAVG V + RV +G + L L GG L + L Sbjct: 177 STRLRIVLHQGWNRQIKRMGEAVGHPVLSIKRVAFGPLKLGS-LKPGGSRHLKSGEVELL 235 Query: 241 RELVELPPETSSK 253 +LV L E + Sbjct: 236 YKLVHLDKEQRNA 248 >UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S1L0_FINM2 Length = 242 Score = 249 bits (636), Expect = 9e-65, Method: Composition-based stats. Identities = 69/239 (28%), Positives = 116/239 (48%), Gaps = 7/239 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A++G+ SRR + +I+ +V V+G I L +V + ++G I+++E Sbjct: 1 MRINKFIAQSGYCSRRNADELIKNSKVYVNGTIL-LDLSYQVNDTDIVEVEGKKINLKED 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 +A KP G T D V D + R VGRLD ++ GLL+ T D Sbjct: 60 K----IYIAINKPIGYASTVKDKFADKKVVDLIK--SDTRVYPVGRLDKDSHGLLILTND 113 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GE L HP E ++ Y V V G+ + +++ L G+ L+ I+F + Sbjct: 114 GEFTYELTHPKFEHKKIYEVLVKGKPNKTEIKQLKDGILLDGYKLKKSKIEFIENVKNDT 173 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 Y VT+ EGRNR++RR+++ + V L RV+ G+ + L G + L + +R Sbjct: 174 KYRVTIFEGRNRQIRRMFDFINHPVLDLKRVQIGNYKMENSLKSGEYKLLKSKDLDLIR 232 >UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUC8_9FIRM Length = 243 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 121/243 (49%), Gaps = 13/243 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPG-LKIRIDGHLISVRE 61 +++K LA G GSR++I+ ++ V+++ ++ G +VTPG + + G L+ Sbjct: 1 MRIEKYLADTGWGSRKDIKQLLAQKIVTINDQVCSKG-GTQVTPGSDCVAVGGQLV---- 55 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK-LRGARWIAVGRLDVNTCGLLLFT 120 Q KPEG L D TV D L + + VGRLD++T GLLL T Sbjct: 56 -PYQRYHYYLLNKPEGILSATED-RHHQTVIDWLGEGYQHLDLFPVGRLDIDTTGLLLLT 113 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED---GPAAFKTIKFSGG 177 +G+LA++L+ P ++V++ Y + G VD A + G+ L D PA + Sbjct: 114 NNGQLAHQLLSPKKKVDKTYTATIRGLVDQADIAAFEAGLDLGDFTSLPAELTVLSQDVD 173 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 +G +Q V + EG+ +V+R+++AVG +V L R+ G + L L G W L + Sbjct: 174 QGTSQ-IQVIIQEGKFHQVKRMFQAVGKEVLSLHRLAMGPLRLESDLAHGQWRSLTEQEA 232 Query: 238 NYL 240 L Sbjct: 233 QAL 235 >UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1Q0_9BACT Length = 260 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 86/268 (32%), Positives = 124/268 (46%), Gaps = 9/268 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISV 59 M E+LQKVLA AG GSRRE E++I AGRV+VDG+ + LG V+ + I DG I Sbjct: 1 MQERLQKVLASAGIGSRRECENVILAGRVTVDGERVTALGATVDAGKSV-IYCDGMPIRP 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 KP+ LCT D R D + ++ R +GRLD + GL++ Sbjct: 60 EAKI-----YYLLNKPKDCLCTNYDELNRLRAIDIIKNVK-QRLYTIGRLDKQSEGLIII 113 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DGEL+N+L HP EV + Y + + G + + + L GV L G IK Sbjct: 114 TNDGELSNKLSHPKYEVNKTYFIEIDGYLSNETITALQSGVWLAFGKTQPVRIKKMHRSF 173 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + + L EG+NRE+RR+ G +V L R++ G + L G + +L + Sbjct: 174 KKSRFEMILCEGKNREIRRMLADHGHKVRTLRRIKIGSLC-DPDLKVGKYRKLTEQEIKS 232 Query: 240 LRELVELPPETSSKVAVEKDRRRMKANQ 267 L + E P D + Sbjct: 233 LYSMTEKKPIEKKSGKQRYDTVTASKKK 260 >UniRef50_C6AV89 Pseudouridine synthase n=17 Tax=Rhizobiaceae RepID=C6AV89_RHILS Length = 268 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 81/248 (32%), Positives = 119/248 (47%), Gaps = 6/248 (2%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAE 64 L + L++ G+ SR + E +I RV+VDG+ I IDG +I+ Sbjct: 27 LPRALSKLGYCSRTQAERLIAENRVAVDGRTVSDASAWVDLATASISIDGLVIAAEAKI- 85 Query: 65 QICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGE 124 L KP G + TR+DPEGRPTV+D L VGRLD + GLLLFT D E Sbjct: 86 ----YLMLNKPRGLVTTRHDPEGRPTVYDCLRDFDIPHLSPVGRLDKASEGLLLFTNDTE 141 Query: 125 LANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQWY 184 A L+ P V + Y V++ +DD + ++ G++ + + N W Sbjct: 142 FAQILLDPVTHVTKTYHVQIDRIMDDEDIAAMTAGIRHDGELLTATAARRLRQGDRNSWI 201 Query: 185 NVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRELV 244 V L EGRNR++RR+ EA+G + RL+RV G + L + LP+G L + LR Sbjct: 202 EVELDEGRNRQIRRMLEALGTECLRLVRVAIGGLELGE-LPKGAVRALTEPELQALRRKT 260 Query: 245 ELPPETSS 252 + + Sbjct: 261 GMERTRRN 268 >UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gasseri RepID=Q042N1_LACGA Length = 245 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 11/241 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 ++ K LA GSR+E+ S+I+ V+V+G++ + + +V + +DG+ I Sbjct: 12 EMRIDKYLANMNVGSRKEVHSLIKKKVVTVNGELVTI-PKQQVKETDLVAVDGNKI---- 66 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLP-KLRGARWIAVGRLDVNTCGLLLFT 120 A Q KP+G + D + TV L K R VGRLD +T GLLL T Sbjct: 67 -AYQQYHYFLLNKPKGVISATED-RSQQTVISLLKTKDRYQGIAPVGRLDKDTTGLLLLT 124 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGEG 179 DG LA+ L+ P++ V + Y ++ G D + ++G+ L DG +K + Sbjct: 125 NDGALAHELLAPNKHVAKVYRAKIAGVPDPETAKKFAQGLILGDGTKLKPAKLKILKQDQ 184 Query: 180 IN--QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 N + + EG+ +++R++ AVG++V L RV G + LP L RG + E+DLA+ Sbjct: 185 DNNLSQIEIQIQEGKYHQIKRMFGAVGMKVLELDRVSMGKLHLPADLKRGEYKEIDLAEI 244 Query: 238 N 238 Sbjct: 245 K 245 >UniRef50_A6EPE0 Pseudouridine synthase n=1 Tax=unidentified eubacterium SCB49 RepID=A6EPE0_9BACT Length = 291 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 78/282 (27%), Positives = 136/282 (48%), Gaps = 15/282 (5%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 S +L K ++ +G+ SRR+ + +IE G+V+++G LGDR P I ++G+LI+ Sbjct: 7 STRLNKAISDSGYCSRRQADKLIEEGKVTLNGNPVSLGDRA--MPDDVIHVEGNLITENN 64 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + + KP G CT D V D + R VGRLD + GLLL T Sbjct: 65 N----LVYIILNKPVGITCTT-DLRVEGNVVDYID--HKERIFHVGRLDKPSEGLLLMTN 117 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG++ N+++ E+EY V+V + +R + G+ LE+ K K + Sbjct: 118 DGDIVNKILRAGNSHEKEYFVKVDRPITTEFIRRMGNGIPLEELETTTK--KCFVEQVSR 175 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + L +G NR++RR+ E + +V L R R +I L LP G W +L + L+ Sbjct: 176 FVFRIILVQGLNRQIRRMCEYLDYEVMELKRERIMNIELG-DLPYGEWRDLTKEELQGLK 234 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRR 283 + V ++ + ++++ +R A + A + + +R Sbjct: 235 DAV---AKSENDSFIDREEKRKAAPKTGDANRNRPRNEAPKR 273 >UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales RepID=C6J9Y4_9FIRM Length = 323 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 83/288 (28%), Positives = 135/288 (46%), Gaps = 13/288 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 ++ K L+ AG SRRE + +IE GR++V+GK A+ G +V + +I D + E Sbjct: 13 KIRINKYLSEAGICSRREADRMIEEGRITVNGKKAESGQKVSLE--DEICADNIPVHKNE 70 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 +L + KP G +C+ TV D L R VGRLD + GLLL T Sbjct: 71 KK----VLLLFNKPRGIVCSTKQQFDETTVTDYLD--YPLRVYPVGRLDKESQGLLLLTN 124 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 +G+L N++M E+EY V V VD +R +S+GV + D + +G Sbjct: 125 EGDLVNKIMRAGNYHEKEYFVTVNKPVDREFVRRMSKGVPVLDTVTRPCRVVQTGE---- 180 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + LT+G NR++RR+ +G +V +L R+R ++ L G+ G + E+ + L Sbjct: 181 CSFRIILTQGLNRQIRRMCRYLGYEVQKLKRIRIMNLTLD-GIREGEYREITAQEWEELN 239 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNN 289 L+E + E++ R K G +G R++ Sbjct: 240 HLLESSTSETVIRTGEQNGNSSDHANERAGAKAGQGSKGVLPAGYRDH 287 >UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F n=235 Tax=Bacteria RepID=RLUF_SALTI Length = 289 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 85/296 (28%), Positives = 142/296 (47%), Gaps = 22/296 (7%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 S +L K ++ +G SRRE + IE G V ++GK A +GD+V G ++++G LI RE Sbjct: 6 STRLNKYISESGICSRREADRFIEQGNVFINGKRAAIGDQVVA--GDVVKVNGRLIEPRE 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + + + ++A KP G + T D E R + D + R +GRLD ++ GL+ T Sbjct: 64 ADDLV--LIALNKPVGIVSTTEDGE-RDNIVDFV--NHSKRIFPIGRLDKDSQGLIFLTN 118 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+L N+++ + E+EY V V + D +R + GV + +K Sbjct: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKEAPF--- 175 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + +TL +G NR++RR+ E G +V++L R R ++ L G+P G W +L + L Sbjct: 176 -VFRITLVQGLNRQIRRMCEYFGYEVTKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLF 233 Query: 242 ELVELPPETSSKVAVEK------DRRRMKANQIRRAVKRHSQ----VSGGRRSGGR 287 +L+E + A K R + + + S S GR+ GR Sbjct: 234 KLIEGSSSEAKPKAKAKPKTAGIKRPVVAIEKSNEKARPASSGKRFTSPGRKKKGR 289 >UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D966_9BACT Length = 237 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 120/239 (50%), Gaps = 12/239 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + LA AG GSRR +E +I +G+V ++G++ +V P +++ L+ + Sbjct: 1 MRLNRFLASAGLGSRRGVEELITSGQVRINGQVVTD-LSTQVGPTDAVKVGSRLLRTEQK 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP G +CT +D R T+FD LP R VGRLD ++ GLLL T D Sbjct: 60 IT-----VLLNKPAGYVCTASDERDRKTIFDLLP-ANWPRVYHVGRLDKDSEGLLLVTND 113 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+L+ L HP ++E+EY V + + L +G + G A + ++ Sbjct: 114 GDLSLALTHPRYKIEKEYEVLLDKPFNPQDREKLLKGFHIIGGRAKAERVEILNP----T 169 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 ++TLT+G R++R + +G +V RL R+R G + + + + G W L + L+ Sbjct: 170 HLSLTLTQGIKRQIRLMLYDLGYEVERLARIRLGPLKIGE-MRPGEWRLLTSKEIAALK 227 >UniRef50_C4XEA6 Pseudouridine synthase n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XEA6_MYCFE Length = 269 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 78/248 (31%), Positives = 129/248 (52%), Gaps = 15/248 (6%) Query: 1 MSE--KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLIS 58 M E ++QK++A+ G+ SRR+ E IE V V+GKI +LGD+ + +I+I+ LIS Sbjct: 24 MKELIRVQKLIAQTGYCSRRKAEEYIEKKLVKVNGKIVQLGDKA--SENDEIKINNQLIS 81 Query: 59 VRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 +++ KP+ + T DP+GR TV D + R VGRLD +T G LL Sbjct: 82 LQKPN---FVYFLLNKPKKTISTVKDPKGRKTVVDLI--NYSERIAPVGRLDYDTTGALL 136 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T D E+ N+L HP E+ R Y VR+ + + + ++ G+ + + K + Sbjct: 137 LTNDWEMINKLTHPKYEILRTYRVRIDSPLSLKEFKLINAGLIVNGKFS-----KQIVDQ 191 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 + Y VTL G ++ L++A+ +V L RV + ++ + K +P G + L L + Sbjct: 192 VDTKSYLVTLHVGSYHHIKELFKALNHEVINLKRVSFANLTVEK-MPEGSYRTLTLKEIK 250 Query: 239 YLRELVEL 246 L+ L+ L Sbjct: 251 DLKVLISL 258 >UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=B1C6T1_9FIRM Length = 238 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 6/241 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 ++ K LA G SRR+ E II G+V+V+G++ + + +++ G +S+ Sbjct: 4 KMRINKYLASCGVASRRKCEEIISRGKVTVNGEVVRELGTIINVEKDLVKVYGKEVSLDT 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 KP+G + G TV D L K R VGRLD +T GL++ T Sbjct: 64 KK----VYYMLNKPQGVISASKSKYGEETVVDLLGKKEH-RLFPVGRLDKDTTGLIILTN 118 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+ A +L HP E E+ Y V G+VD L L +GV ++ + ++ G+N Sbjct: 119 DGDFAYKLTHPKYEKEKTYEALVKGKVDSKSLDKLKQGVVIDGKKTSRAKVRLVKMIGVN 178 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +TL EGR R+V+++ E VG +V +L R + L L G + +L + + L Sbjct: 179 SLVEITLIEGRKRQVKKMCEKVGHKVIKLNRTMENGLSLG-DLEIGEYRKLTKNEVSKLL 237 Query: 242 E 242 + Sbjct: 238 K 238 >UniRef50_A9MDW0 Pseudouridine synthase n=43 Tax=Rhizobiales RepID=A9MDW0_BRUC2 Length = 611 Score = 246 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 99/279 (35%), Positives = 140/279 (50%), Gaps = 10/279 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 SE++ K LARAG SRRE E++I GR++V+GK+ + V V I +DG + E Sbjct: 103 SERIAKRLARAGIASRREAETMIATGRIAVNGKVLE-SPAVNVKRTDIITVDGKPLRQTE 161 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 R+ Y+KP G + T DPEGRPTVF+ LP R ++VGRLD+NT GLLL T Sbjct: 162 R----TRLWLYHKPAGLVTTNRDPEGRPTVFEALPP-EMPRVLSVGRLDINTEGLLLLTN 216 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG L+ L PS R Y VR G+V +L +L G+ ++ + +G N Sbjct: 217 DGGLSRVLELPSTGWLRRYRVRAHGKVTQQQLDELKNGIAVDGVFYGSVEAELERVQGAN 276 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W ++ L EG+NREV+ + A+G+ V RLIRV +G L L G E+ LR Sbjct: 277 VWISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLG-DLEEGAVREIKG---RTLR 332 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSG 280 + + S + +N + R G Sbjct: 333 DQLGDKLIEESGADFDAPVLNEFSNAAVQGRTRREMEEG 371 >UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5KLG0_9FIRM Length = 261 Score = 246 bits (629), Expect = 6e-64, Method: Composition-based stats. Identities = 75/266 (28%), Positives = 119/266 (44%), Gaps = 32/266 (12%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M +L K L G G+R +++ I G VSV+G+IAK +R T +I G I Sbjct: 1 MKLRLDKYLTEMGCGTRSQVKKEILKGSVSVNGEIAKKAERKVDTEKDEIIFKGEKI--- 57 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 KP G + D + R TV D + + + GRLD +T GLLL T Sbjct: 58 --FYAGYEYFMLNKPAGVVSATEDKKER-TVIDLIKESKRKDLFPAGRLDKDTEGLLLIT 114 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIKFSG 176 DG+LA+RL+ P + V++ Y ++ G V + +R +GV + D PAA + + Sbjct: 115 NDGQLAHRLLSPKKHVDKIYYAKIKGIVTEEDVRLFEKGVHIGDEKPTMPAALEILSVQK 174 Query: 177 GEGINQWYN----------------------VTLTEGRNREVRRLWEAVGVQVSRLIRVR 214 + +T+ EGR +V+R++ AVG +V L R++ Sbjct: 175 ERRKEKIKEQKILPETKNETDEKEDGYSEIYLTIKEGRFHQVKRMFRAVGKEVVYLKRIQ 234 Query: 215 YGDIPLPKGLPRGGWTELDLAQTNYL 240 +G + L L G + +L + L Sbjct: 235 FGTLTLDPSLKPGQYRKLTEEEVEQL 260 >UniRef50_B6R892 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R892_9RHOB Length = 681 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 97/257 (37%), Positives = 136/257 (52%), Gaps = 10/257 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ K +ARAG SRRE E+ IEAGRVSV+G + VT K+ +DG + RE Sbjct: 37 ERIAKAMARAGLCSRREAETWIEAGRVSVNGNVLDT-PAFTVTQKDKVYVDGKPLPTRER 95 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R+ ++KP G + T DPEGR TVFD LPK R + VGRLD+NT GLLL T D Sbjct: 96 ----TRLWLFHKPRGTVTTNKDPEGRKTVFDILPK-DMPRVVTVGRLDINTEGLLLLTND 150 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G L+ + P+ R Y VR FG+V +L L GV ++ +G N Sbjct: 151 GGLSRVIELPATGWLRRYRVRAFGKVTQEQLDALKDGVAIDGVLYGAIEATLDTEKGDNV 210 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W + L EG+NREV+R+ E + + V+RLIR+ +G L L G EL + LR+ Sbjct: 211 WLTIGLREGKNREVKRILEHLDLSVNRLIRISFGPFQLG-DLGEG---ELQEIRGRVLRD 266 Query: 243 LVELPPETSSKVAVEKD 259 + + + + + Sbjct: 267 QLGERLVSEADLDFDAP 283 >UniRef50_B1X5I1 Pseudouridine synthase, Rsu n=1 Tax=Paulinella chromatophora RepID=B1X5I1_PAUCH Length = 242 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 124/239 (51%), Gaps = 8/239 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++LQK++A +G SRR+ E ++ G+V V+G +A LGDR ++ I IDG I + ++ Sbjct: 4 QRLQKLIAISGFCSRRQAEKLLIQGQVRVNGLLAHLGDRA-ISHVDTIEIDGKPIRLPDN 62 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLLFT 120 L KP G + + DP+GRPT+ D +P+ L+ + +GRLD N+ G L+ T Sbjct: 63 ----HVTLLINKPTGVISSCQDPQGRPTILDLIPQSILQNRKLHPIGRLDSNSRGALILT 118 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDG L L HP ++ Y V V G+ + ++ +G+ L+ + +K Sbjct: 119 TDGSLTMNLSHPRYSHDKAYKVWVEGRPSSSVIKIWQQGIFLDKKMTSRVELKILCKRVT 178 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + + + EGR R++RR +G V L R+ I L LP G W +L+ + + Sbjct: 179 STLLEIVMKEGRKRQIRRTATFLGHPVIDLQRIGIASIRLGS-LPEGRWRKLNSYELSA 236 >UniRef50_Q0G3T3 Pseudouridine synthase n=4 Tax=Alphaproteobacteria RepID=Q0G3T3_9RHIZ Length = 639 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 101/287 (35%), Positives = 147/287 (51%), Gaps = 12/287 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ + LARAG SRR+ E++I GRV V+GKI ++V P +I +DG L+ E Sbjct: 184 MRIARRLARAGIASRRDAEAMIVDGRVKVNGKIID-SPALDVKPTDRIEVDGALLPQAER 242 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R+ ++KP G + T DPEGR TVFD LP+ R +++GRLD+NT GLLL T D Sbjct: 243 ----TRLWLFHKPAGTVTTNKDPEGRRTVFDMLPE-DMPRVLSIGRLDINTEGLLLLTND 297 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G L+ L PS R Y VR G + AKL +L G+ ++ +G N Sbjct: 298 GGLSRVLELPSTGWLRRYRVRAHGSITQAKLDELRNGISVDGVFYGAIEATLDREQGSNV 357 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W + L EG+NREV+ + A+G++V+RLIR+ YG L L G E+ LR+ Sbjct: 358 WITLGLREGKNREVKNVLGALGLEVNRLIRLSYGPFQLG-DLAEGSVREVKG---RTLRD 413 Query: 243 LVELPPETSSKVAVEKD--RRRMKANQIRRAVKRHSQVSGGRRSGGR 287 + + V + + A R R S+ S +GG+ Sbjct: 414 QLGDRLVEEAGVDFDGPINKPFSNAPVEGRQDARPSKKSDWVSAGGK 460 >UniRef50_UPI0000D52F9C putative ribosomal large subunit pseudouridine synthase B (Pseudouridylate synthase) (Uracil hydrolyase) n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F9C Length = 242 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 93/240 (38%), Positives = 138/240 (57%), Gaps = 6/240 (2%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +LQK+LARAG+GSRR E II +G+V V+G++AKLG V +I+I + E Sbjct: 5 RLQKILARAGYGSRRGCEEIISSGKVIVNGEVAKLGC--VVNSDDEIKIGSKKV---EFI 59 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFTTD 122 + R+ KP G +C++ +++D +PK+ + + VGRLD N+ GL+ FT D Sbjct: 60 DVQTRLFVLNKPTGVICSKKTEGNLRSIYDLIPKIDNEKNLMIVGRLDANSSGLIFFTND 119 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G L+ + HPS +REY VR G D+ ++ RG+++++ I N+ Sbjct: 120 GNLSEFIAHPSNLFDREYLVRARGHFDEEIKENMLRGIKIDNQLLRLSDIVDGDKTNSNR 179 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 WY V L GRNRE+R+++E+ G+QVSRL RVR+G I LPKGL G W EL + Sbjct: 180 WYTVCLLTGRNREIRKIFESQGLQVSRLKRVRFGPIFLPKGLKEGDWQELKSKDLEKMYS 239 >UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A9KNY1_CLOPH Length = 240 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 9/239 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K LA G+R E++ +I GRV V+G + + KI +D RE + Sbjct: 9 RLDKYLADLSVGTRTEVKQMIRKGRVMVNGNTETSPETKVDSNHDKIFVDS-----RELS 63 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 KP G + ND + + TV D + + + VGRLD +T GLL+ T DG Sbjct: 64 YVTLEYFMLNKPAGVVSASND-KKQTTVVDLIDEAKRKDLFPVGRLDKDTEGLLIITNDG 122 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 +LA++L+ P + V++ Y ++ + + G+++++ A Q Sbjct: 123 DLAHQLLSPKKHVDKVYFAKLRDPLKKEDEEAFAAGLKIDEEFTALPA---KLERISEQE 179 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 VT+ EG+ +++R++EA +V L R+ G + L + L G + EL + LRE Sbjct: 180 AYVTIREGKFHQIKRMFEATRNEVIYLKRISMGSLVLDESLSLGEYRELTEEEIEALRE 238 >UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin514 RepID=B9XS61_9BACT Length = 235 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 84/238 (35%), Positives = 122/238 (51%), Gaps = 9/238 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK LA AG SRR E II GRVSV+G + +LG +V+ I +DG + ++ Sbjct: 3 RLQKFLAEAGVASRRASERIILGGRVSVNGDTVRELGTKVDPIH-DSIALDGAPLRLKRK 61 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 +A KP G +C+R D R + D LP +VGRLD ++ GL+ T D Sbjct: 62 L-----YVALNKPRGYVCSRKDDRKRKVIGDLLP-AEWDNLYSVGRLDSDSEGLIFLTND 115 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GE + L HP V ++Y V G+V+ L+ G+ E + + Sbjct: 116 GEFSLHLTHPRYRVLKKYLATVEGRVEQEMLQRFKHGIVHEGEKLKVDRARTLSVQNSTS 175 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + LTEG+NRE+RRL+E+ G+ VSRL+R++ G I L + L G W L A+ L Sbjct: 176 LVELELTEGKNREIRRLFESQGLTVSRLVRMQIGKIKLGE-LRSGKWRMLTEAEIKSL 232 >UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (class) RepID=B0RHF4_CLAMS Length = 291 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 84/237 (35%), Positives = 117/237 (49%), Gaps = 6/237 (2%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +LQKV+A AG SRR E +I AGRV+V+G+ R ++ +D + + S Sbjct: 26 RLQKVMAAAGVASRRVCEDMIAAGRVTVNGETVTEPGRRIDPDVDEVAVDDQAVQLDTSK 85 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 R L KP G + D GRP + R VGRLD T GLL+ T DG Sbjct: 86 ----RYLMLNKPVGIYSSLRDERGRPD-LREFTEEFEERLFNVGRLDAETSGLLILTNDG 140 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 +LA+ L HPS V + Y +V G+V ++ L++GV LEDGP + G G Sbjct: 141 DLAHVLAHPSFGVLKTYIAKVTGRVTPQTIQRLTQGVDLEDGPIQADRARILSGGGDQTL 200 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +TL GRNR VRR+ + VG V L+R ++G + L L G +L + L Sbjct: 201 VEITLHSGRNRIVRRMLDEVGHPVEELVRRQFGPLHLGS-LGVGRVRDLTSDELGQL 256 >UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales RepID=C5EVC9_9FIRM Length = 294 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 89/268 (33%), Positives = 139/268 (51%), Gaps = 13/268 (4%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLI---SVRE 61 L K L++ G SRRE + +IEAG+V VDG A +G +V+ PG K+ DG + S + Sbjct: 36 LNKWLSQMGVCSRREADRLIEAGKVWVDGSPAAMGQKVK--PGQKVVCDGVPVNGGSGAD 93 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 S + +L KP G +CT +D + + + L R VGRLD ++ GLLL T Sbjct: 94 SRKPKPVLLVVNKPRGIVCTTSDKDRAMNIVEYLD--YPERIYPVGRLDKDSEGLLLMTN 151 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+L N++M E+EY V V + D + +++G+ L + + K +G Sbjct: 152 QGDLVNKIMRSGNAHEKEYIVTVDRPLTDDAMDRMAKGIYLRELETVTRPCKVKRVDG-- 209 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + +++ LT+G NR++RR+ EA G V RL+RVR +I L GL G E+ + R Sbjct: 210 KTFSIILTQGLNRQIRRMCEACGCHVERLVRVRIMNIRLD-GLETGASREVGQEEY---R 265 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIR 269 EL+ L ++SS KA ++ Sbjct: 266 ELMRLLRDSSSLPGGRGRAVPHKARTVK 293 >UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG n=68 Tax=Bacteria RepID=YTZG_BACSU Length = 239 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 116/230 (50%), Gaps = 8/230 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K+LA +G+GSR+E++++++AG V +DGK AK ++ + G + RE Sbjct: 1 MRLDKLLANSGYGSRKEVKAVVKAGAVMIDGKPAKDVKEHVDPDTQEVTVYGEPVDYRE- 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL-PKLRGARWIAVGRLDVNTCGLLLFTT 121 L KP+G L D + TV D L P+ GRLD +T G LL T Sbjct: 60 ----FIYLMMNKPQGVLSATEDSRQQ-TVVDLLTPEEMRFEPFPAGRLDKDTEGFLLLTN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGEGI 180 DG+LA+RL+ P + V + Y V + Q+ + DL GV +E G + + Sbjct: 115 DGQLAHRLLSPKKHVPKTYEVHLKSQISREDISDLETGVYIEGGYKTKPAKAEIKTNDSG 174 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWT 230 N +T+TEG+ +V+++ +AVG +V L R+ G + L L G + Sbjct: 175 NTVIYLTITEGKYHQVKQMAKAVGNEVVYLKRLSMGRVSLDPALAPGEYR 224 >UniRef50_C6XHY6 Pseudouridine synthase n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XHY6_LIBAP Length = 354 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 96/243 (39%), Positives = 134/243 (55%), Gaps = 10/243 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +++ KV+ARAG SRRE+E +I RV V+G + + V V I +DG + E Sbjct: 14 QRVSKVIARAGIASRREVERMIAQQRVKVNGILLER-AAVNVMSTDHIEVDGVPLRKAER 72 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R+ Y+KP G + T +DP+GR TVFD LP + +R I+VGRLD+NT GLLL T D Sbjct: 73 ----TRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSI-FSRVISVGRLDINTEGLLLLTND 127 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA L PS + R Y VR GQVD KL L +G+ ++ + +G N Sbjct: 128 GGLARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNA 187 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W V L EG+NRE+++++E +V+RLIR+ YG L L G E+ LRE Sbjct: 188 WVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLLA-GSTREVSK---KILRE 243 Query: 243 LVE 245 + Sbjct: 244 QLG 246 >UniRef50_Q7VBH8 Pseudouridine synthase n=1 Tax=Prochlorococcus marinus RepID=Q7VBH8_PROMA Length = 237 Score = 243 bits (622), Expect = 4e-63, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 121/240 (50%), Gaps = 5/240 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M E+LQK+++ +G SR++ E++I+ RV ++ +IA LG++ ++ + + Sbjct: 1 MKERLQKIISNSGICSRKKAEALIDQKRVFINNEIASLGEKADILIDIIRI----DDYII 56 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + +V+ KP G + T D GR TV D LP VGRLD ++ G L+ + Sbjct: 57 PKNIKSSKVILLNKPTGVISTCRDTHGRKTVLDLLPDNLQKGMHPVGRLDKDSRGALIIS 116 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 +G L L HP ++ Y+V + G L+ G++++ + +G Sbjct: 117 NNGLLTLHLTHPRFNHKKRYSVLITGVPSKNTLKKWRNGIEIDKKTTRKALVNIVKRQGN 176 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N + L EGRNR++R++ + +G V LIR+ G+I L GL G W E++ + N L Sbjct: 177 NTLLEIVLFEGRNRQIRKVADKLGHPVIDLIRIEIGNIKL-NGLKEGAWREINELEWNQL 235 >UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSS4_9BACT Length = 451 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 115/241 (47%), Gaps = 9/241 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +L + +A++G SRRE + I+AG + +V P +++ + + + Sbjct: 216 EIRLNRFIAQSGICSRREADDFIQAGL-VTVNGVVVTTLGTKVQPTDEVKFNDSRVEGEK 274 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 L KP+G + + +DP TV + + R VGRLD N+ GLLLFT Sbjct: 275 KV-----YLVLNKPKGYVTSLDDPHADKTVMELVKDACTERIYPVGRLDKNSVGLLLFTN 329 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+L +L HPS + ++ Y V + + A + +++G+ LEDG I + + Sbjct: 330 DGDLTRQLTHPSFQKKKIYQVSLDKPLTKADMEQIAQGITLEDGEIYADEIAYVKEDK-- 387 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + GRNR VRR++E +G V +L RV Y + K L RG W L + L+ Sbjct: 388 TEVGIEIHSGRNRIVRRIFEHLGYAVKKLDRVYYAGLS-KKNLKRGQWRFLTREEVQRLK 446 Query: 242 E 242 Sbjct: 447 S 447 >UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales RepID=C5WHE9_STRDG Length = 245 Score = 243 bits (620), Expect = 6e-63, Method: Composition-based stats. Identities = 66/244 (27%), Positives = 115/244 (47%), Gaps = 11/244 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTP-GLKIRIDGHLISV 59 M+ +L K L G GSR +++S+++ + V+ ++ + +V++ + G ++ Sbjct: 1 MTMRLDKFLVETGVGSRSQVKSLLKKKAILVNQEV-ETSPKVQINEHKDVVTYLGKPLTY 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK-LRGARWIAVGRLDVNTCGLLL 118 KP G L D + TV D L + R VGRLD +T GLLL Sbjct: 60 EA-----FVYYILNKPAGFLSATKD-RAQATVIDLLDETARQKDVFPVGRLDKDTRGLLL 113 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T +G+LA+ L+ P + V +EY +V G + DA D ++G+ L+D ++ + Sbjct: 114 LTNNGQLAHDLLSPKKHVTKEYLAKVAGIMTDADKDDFAKGISLKDHQCLPAKLEVLDKD 173 Query: 179 --GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 ++T+ EG+ +V+R+ A G +V L R+ G + L GL G + L + Sbjct: 174 LSQETCVVSITIQEGKFHQVKRMVAACGKEVLELQRLSMGPLRLDPGLAEGDFRRLTSDE 233 Query: 237 TNYL 240 L Sbjct: 234 LQSL 237 >UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodictyon group RepID=Q3B289_PELLD Length = 250 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 76/247 (30%), Positives = 121/247 (48%), Gaps = 9/247 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + ++ + LA G SRR + ++ GRV+++G +A V ++ +DG + E Sbjct: 12 AVRINRYLAMCGIASRRAADQMVLEGRVTINGVLASEPGVKVVPGKDEVIVDGSKFAQPE 71 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + + + KP + T +D R V D + R VGRLD T G+LL T Sbjct: 72 GRKI---YILFNKPRNVITTSSDERNREMVLDFID--VNERVYPVGRLDRKTTGVLLLTN 126 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSG-GEGI 180 DG LAN+LMHPS V++EY + A L L+ G++L D + G+G Sbjct: 127 DGMLANKLMHPSSNVKKEYIAVLDAPFPQASLPLLTGGMRLSDTGEKVSPCQAKIMGDGS 186 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 W +++ EG+N +VRR+++ +G +V+RL R Y + + L RG W L + L Sbjct: 187 QVW--ISIHEGKNHQVRRMFKTLGFEVTRLDRPTYAGLTVG-DLRRGQWRHLTRTEVQQL 243 Query: 241 RELVELP 247 R L P Sbjct: 244 RHLAGSP 250 >UniRef50_Q13BM8 Pseudouridine synthase n=55 Tax=Alphaproteobacteria RepID=Q13BM8_RHOPS Length = 795 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 99/271 (36%), Positives = 141/271 (52%), Gaps = 11/271 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ KV+ARAG SRR+ E+ I GRV+V+G++ ++VT I +DG + RE Sbjct: 477 RIAKVVARAGLCSRRDAEAWIVEGRVAVNGRVID-SPALDVTYSDVITVDGKPLPERER- 534 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 R+ Y+KP G + T DPEGRPTVFD LP+ R I++GRLD NT GLLL T DG Sbjct: 535 ---TRLFLYHKPRGLMTTHADPEGRPTVFDNLPEDL-PRLISIGRLDFNTEGLLLLTNDG 590 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 LA L P R Y VR G+V A+L L+ GV+++ K +G N W Sbjct: 591 GLARALELPETGWLRRYRVRAHGEVTQAQLDQLASGVEVDGVKYGPIEAKLERDQGANVW 650 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 + EG+NREVR + +G++V+RLIRV YG L + + G ++ +T LRE Sbjct: 651 LVFAIREGKNREVRNVLAHLGLEVNRLIRVSYGPFQLLE-IEEGQ---VEEVKTRVLREQ 706 Query: 244 VELPPETSSKVAVEKDRRRMKANQIRRAVKR 274 + ++ + R K Sbjct: 707 LGEKIIKLAEADFGGPS-PSETRPKPRPGKP 736 >UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae RepID=B3QY10_CHLT3 Length = 297 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 70/245 (28%), Positives = 125/245 (51%), Gaps = 12/245 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A G SRR+ + +IE G V V+GK+ +LG +V+ ++ ++G + Sbjct: 44 RLNKFIALCGEASRRKADEMIEQGEVMVNGKVVMELGYKVD-RRADEVVVNGKKL----H 98 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP+ + T +D + R TV + + R VGRLD +T G+LL T D Sbjct: 99 ENTQKIYILLNKPKDVVTTSSDEKSRKTVVELV--GLKDRVFPVGRLDRDTTGVLLLTND 156 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSG-GEGIN 181 G+L RL HP+ V+++Y + ++ L+++ +G +L+D +G Sbjct: 157 GDLTYRLTHPTFGVQKQYVATLDKKITSVDLQNIKKGFRLKDTGEKVSPCNARILDDGYT 216 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W V + EG+N ++ R++ + G V +L+RV YG + + + RG W L + + L Sbjct: 217 IW--VAIHEGKNHQIHRMFWSFGYNVKKLVRVAYGGLEVG-TMRRGEWRFLTQLEVSKLY 273 Query: 242 ELVEL 246 + V+L Sbjct: 274 KQVQL 278 >UniRef50_C1XNC4 Pseudouridine synthase n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XNC4_MEIRU Length = 257 Score = 243 bits (620), Expect = 7e-63, Method: Composition-based stats. Identities = 84/251 (33%), Positives = 128/251 (50%), Gaps = 14/251 (5%) Query: 1 MS-EKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLIS 58 M+ E+L KVL G GSR+EI + AG ++++GK +A G + + + I + G + Sbjct: 16 MAYERLDKVLGHLGVGSRKEIHRLARAGLITINGKIVADAGFKFDPSQ-AHIEVAGEPL- 73 Query: 59 VRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLR-GARWIAVGRLDVNTCGLL 117 Q L KP G + + DP G P + LP+ W+ VGRLD +T GLL Sbjct: 74 ----VYQKFFYLLLNKPAGYITSTKDPSGTP-ITALLPEEFWRNDWMPVGRLDKDTEGLL 128 Query: 118 LFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG-VQLEDGPAAFKTIKFSG 176 L TTDGEL +RL HP +V + Y V + + + G ++LE P + + G Sbjct: 129 LLTTDGELLHRLTHPRWKVTKRYYVELASPATPEDVAVFAAGTLELEGEPLQPAEL-YLG 187 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 + + + L EGR +V+R++ A G QV+ L R+ +G + LP LP G +L + Sbjct: 188 PDP--RKVELVLREGRFHQVKRMFAARGNQVTYLKRLAFGPLQLPPNLPPGASRQLTPDE 245 Query: 237 TNYLRELVELP 247 L E+V LP Sbjct: 246 IKALYEVVGLP 256 >UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KV26_9FIRM Length = 239 Score = 243 bits (620), Expect = 8e-63, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 111/244 (45%), Gaps = 11/244 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGL-KIRIDGHLISVRE 61 +L K L+ G SR ++ I G V ++G+I K +EV PG +I I E Sbjct: 1 MRLDKYLSDMGVESRSVLKREIRKGLVKINGEIVKD-PSMEVQPGNSEIVYKDEPIHYEE 59 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 KP G L + D + + TV D VGRLD ++ GLLL Sbjct: 60 -----FSYYMMNKPVGVLSSTEDRK-QKTVLDLFSDKHRKDLFPVGRLDKDSEGLLLIMN 113 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLE-DGPAAFKTIKFSGGEGI 180 DG LA++L+ P +E++Y V + G++ + +L L +G+Q + D A + Sbjct: 114 DGALAHKLLSPKMHIEKKYLVEIPGKISEEELDRLRQGIQYDTDLIAMPAKARCLSSTEE 173 Query: 181 NQWYNVTLTEGRNREVRRLWEAV--GVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 V + EG+ ++++++ A+ V++L R+ G + L L G + +L + Sbjct: 174 GSRVEVIIMEGKFHQIKKMFLALSTDYVVTKLQRLSMGPLHLDPALAPGEYRKLSEEEVQ 233 Query: 239 YLRE 242 L+ Sbjct: 234 ALKN 237 >UniRef50_Q1RJR2 Uncharacterized RNA pseudouridine synthase RBE_0321 n=15 Tax=Rickettsia RepID=Y321_RICBR Length = 229 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 130/233 (55%), Gaps = 9/233 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++L K+++ AG SRR+ E +I G+V V+G I V ++ + G LI+ Sbjct: 2 QRLAKLISNAGICSRRDAEKLILDGQVKVNGIIVT-SPATNVDTDNQVEVSGSLIT---- 56 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + Q R+ YYKP G + T DP R TVF++L L R I++GRLD+N+ GLLL T + Sbjct: 57 SSQKSRLWIYYKPVGLITTHKDPLSRKTVFEQLTGL--PRVISIGRLDLNSEGLLLLTNN 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA + PS +++R Y VR +G D L+ + ++++ ++IK N Sbjct: 115 GDLARQFELPSSKLKRVYHVRAYGNPDP-LLKSNYKNLEIDGIFYNPQSIKLLRKNSTNS 173 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLA 235 W V L EG+NRE+RR++E G++V++LIR YGD L L + E+ Sbjct: 174 WLEVILFEGKNREIRRIFEHFGLKVNKLIRTEYGDFKLD-NLKPNEYREVTKK 225 >UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteraceae RepID=A8ZRV1_DESOH Length = 241 Score = 242 bits (619), Expect = 9e-63, Method: Composition-based stats. Identities = 82/238 (34%), Positives = 120/238 (50%), Gaps = 14/238 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK L+ AG SRR E I GRV+V+G++ +LG +V+ + DGH +++ ES Sbjct: 11 RLQKFLSGAGVCSRRRAEVYIAEGRVAVNGQVVTELGTKVDPESDD-VMFDGHRVTLAES 69 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 +A KP G + + + TV + + R VGRLD +CGLLL T+D Sbjct: 70 ----HVYIALNKPPGYVTSCL-QKQETTVMELV--AVDQRVFPVGRLDKPSCGLLLMTSD 122 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G L RL HPS + E+EY V V DA L + RG+ + +K ++ Sbjct: 123 GGLHQRLSHPSFDHEKEYDVACDRPVSDADLDAMRRGMVITGRKTRPAKVKRLS----DR 178 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + L EGRNR++RR+ E +G +V L R+R I L L G W L + L Sbjct: 179 RFLIILQEGRNRQIRRMAEMLGNRVVLLRRIRIAHIHLG-DLAEGRWRYLTEEEKKAL 235 >UniRef50_Q1LJQ9 Pseudouridine synthase n=3 Tax=Burkholderiales RepID=Q1LJQ9_RALME Length = 238 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 118/245 (48%), Gaps = 13/245 (5%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKL-GDRVEVTPGLKIRIDGHLISV 59 M+ L ++L G G+RR ++ AG V V+G++ + G R EV GL++ +DG Sbjct: 1 MATTLDRILQSQGFGTRRYCGDLVAAGLVEVNGELCEDPGARFEVD-GLRLMVDGE---- 55 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLL 118 E + KP G C++ P P+V++ LP R AVGRLD +T GLLL Sbjct: 56 -EWLACTKAYVMLNKPTGYECSQR-PRHHPSVYNLLPVPLRQREVQAVGRLDHDTTGLLL 113 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG+ + P ++V + Y V F V ++ L GV+L+D PA I E Sbjct: 114 LTDDGQFIHAQTSPKKQVPKIYEVTTFDPVTPEQVEALRTGVKLDDEPA---PIAADACE 170 Query: 179 GINQW-YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 + +TL +G+ +V+R+ AVG V+ L R G + L L G W L Sbjct: 171 ATGERSLRLTLLQGKYHQVKRMVAAVGNHVTALHRSAIGGLVLDPALGPGEWRWLTPEDL 230 Query: 238 NYLRE 242 LR+ Sbjct: 231 AALRD 235 >UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=B9MRL6_ANATD Length = 233 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 123/236 (52%), Gaps = 12/236 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRE 61 +L K L G GSR +++ +I G V+V+GK I ++ ++ I +DG + + Sbjct: 1 MRLDKFLTHCGFGSRSQVKKLIREGIVTVNGKQIVEVDFKINPEE-DIIEVDGRVAKFSK 59 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFT 120 + KP+G +C+ N+ TVF + R VGRLD + GLL+ T Sbjct: 60 QI-----YIMMNKPKGYVCS-NEELASLTVFSLISDDLKYRDLHTVGRLDKDAEGLLIIT 113 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGE +R++ P + +E+EY VR+ +VD+ KL + G+ L+DG +KT+ Sbjct: 114 DDGEYTHRVISPKKRIEKEYLVRLEKEVDEEKLNEFENGIILDDG---YKTLPAKYTIID 170 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 + + + EG+ +V+R++EA+G +V L R+R G + L + L G + + + + Sbjct: 171 STTVKLCIYEGKYHQVKRMFEAIGNKVVDLKRLRIGGLNLDQSLKPGEYRVMKVEE 226 >UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37AA4 Length = 255 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 67/243 (27%), Positives = 113/243 (46%), Gaps = 8/243 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K ++ +R +I+S+ G V+V+G K D T + + G+ IS Sbjct: 5 RLDKFISERTEYTRSQIKSLCAKGSVTVNGSPVKRSDTKIDTGADDVTVCGNAIS----- 59 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRL-PKLRGARWIAVGRLDVNTCGLLLFTTD 122 + R + KP+G + + +D +G TV + P++R GRLD ++ G LL T D Sbjct: 60 SERFRYILLNKPKGYVSSTDDKDGE-TVIKLVPPEMRSKGLFPAGRLDKDSTGALLITDD 118 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA+R+ P+ + + YA + + + ++G+ L +G A K E + Sbjct: 119 GALAHRICSPNNHISKIYAAELSRPFEQEYVEKFAKGIVLANGEAC-SPCKVQKAENADN 177 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 V L EG +V+R++ AVG V L R+ G + LPK LP G L + Sbjct: 178 LAFVELHEGMYHQVKRMFAAVGNHVENLKRISIGGLILPKDLPLGKCMYLLPKDIEQMFT 237 Query: 243 LVE 245 ++ Sbjct: 238 KID 240 >UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BLA3_9BACT Length = 334 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 114/243 (46%), Gaps = 10/243 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVR 60 S +L + ++ +G SRRE + I AG + V+GK + ++G +V ++ + DG +++ Sbjct: 100 SIRLNRYISNSGVCSRREADIFIAAGSIKVNGKAVVEMGYKVALS--DVVSFDGVVLNPE 157 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + A + KP+ + D + + ++ VGRLD + GLLLFT Sbjct: 158 KRA-----YILLNKPKDFDSSATDASQPKSALGLVANATKSKIKPVGRLDKSASGLLLFT 212 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGEL +L P + Y + + L + +G+ LEDGP I G Sbjct: 213 NDGELQTKLTKPKNGFRKIYHATLSKSLKADDLEKVRKGIVLEDGPVRVHEISNIEGSPA 272 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + + +N ++RL++ +G ++ +L RV Y + K LPRG W L + L Sbjct: 273 TE-VGIEILSAKNNIIKRLFDHLGYELIKLDRVVYAGLT-KKDLPRGQWRTLTEQEIINL 330 Query: 241 REL 243 + + Sbjct: 331 KMI 333 >UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4Z6_9FIRM Length = 235 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 105/239 (43%), Gaps = 9/239 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K LA +R E ++++ GRV+V+G + K GD ++ G + +DG ++ R+ Sbjct: 1 MRLDKYLAETAQCTRSEAKTLLNRGRVTVNGAVCKKGD-TQLREGDSVAVDGAPLAYRQ- 58 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFTT 121 L KPEG + D TV D + R VGRLD + G +L T Sbjct: 59 ----FVYLMLNKPEGVVSASTDKRD-TTVVDLIGDAYPRRELFPVGRLDKTSTGFVLLTD 113 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG A+ ++ P R V + Y V + + + R + GV L DG A + Sbjct: 114 DGGFAHEILAPKRHVSKTYTVVIDTPLTEEMRRGFAEGVTLADG-TALSPAEVEALTPDG 172 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 V L +G +++R++ G V+ L R G + L L G W EL + + Sbjct: 173 LTVKVRLRQGVYHQIKRMFGVYGAGVNALHRDAIGGLALDPALAPGQWRELSAEEVTAI 231 >UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus RepID=Q49YI4_STAS1 Length = 232 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 114/239 (47%), Gaps = 11/239 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKI-RIDGHLISVRE 61 +L K L+ G G+R E++ ++ +V++D K+ + + ++ P L+I +++ I Sbjct: 1 MRLDKFLSNMGVGTRTEVKQRLKKKQVTIDDKV-ETSPKKQINPELEIVKVNDQKIDFVN 59 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 L KP+ + D + TV D + R VGRLD +T GLLL T Sbjct: 60 KV-----YLMLNKPKDYISATTDEQ-HKTVLDLIEDYRYLDLFPVGRLDKDTEGLLLITN 113 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+ + LM P + V + Y V + + G++L +G A K G+ +N Sbjct: 114 DGQFNHELMSPGKHVAKTYEVISQKNITKNDINAFKVGIELNEGLAKPA--KLVQGDELN 171 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + VT+ EGR +V+R++ A+ +V L R+R GD+ L L G + L L Sbjct: 172 KSF-VTIYEGRYHQVKRMFHAIDNEVLALKRIRIGDLQLDSTLASGEYRHLTQQDFKLL 229 >UniRef50_C6XQT2 Pseudouridine synthase n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XQT2_HIRBI Length = 508 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 106/288 (36%), Positives = 157/288 (54%), Gaps = 21/288 (7%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ K LA AG SRRE E +IE G V+V+G++ +VT KI ++G + + Sbjct: 34 ERIAKWLAAAGVCSRREAERLIEEGLVAVNGQVLD-SAAFKVTGNEKITVEGKRVGGPDK 92 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R+ ++KP+G + T +DPEGRPTVF+ LPK + R + +GRLD+NT GLLL T D Sbjct: 93 ----TRLWRFHKPKGLVTTNSDPEGRPTVFEHLPK-KLPRVMTIGRLDLNTEGLLLLTND 147 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA L P+ ++R Y R FG++ A+L L GV E +G N Sbjct: 148 GELARTLELPTTGLKRCYRARAFGKITQAELDKLQEGVLFEGVVYRSIIATLDKTKGDNN 207 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W ++TLTEG+ RE RR E+VG+ V+RLIRV YG L L GG E+ + L E Sbjct: 208 WIDMTLTEGKKREARRALESVGLIVNRLIRVSYGPFELG-DLVEGGVAEIPAGEL--LSE 264 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNN 290 + ++ + RR A+ + ++ ++ RR+ GR+ + Sbjct: 265 FGD---------SISRKRRPDPASVPQSYLEPDTK---RRRTKGRDED 300 >UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=C2KPR0_9ACTO Length = 278 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 93/244 (38%), Positives = 129/244 (52%), Gaps = 9/244 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK+L++AG SRR E +I+ GRV VDG+ + ++G ++V P +I ++G I Sbjct: 43 RLQKLLSQAGVASRRASEDLIKRGRVQVDGETVTEMG--LKVLPSARITVNGQRI----H 96 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + +V A+ KP G + T + RP + D R VGRLDV T GL+L T + Sbjct: 97 TDAALQVWAFNKPVGTVSTMQPEDDRPCLGD-WATKLPQRVFHVGRLDVATAGLILLTNN 155 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LANRL+HP EV + Y V GQV + L RGV+LEDG T K + Sbjct: 156 GDLANRLVHPRYEVPKTYVAMVQGQVKPGLGKVLRRGVELEDGVTKVDTFKLVEVRRGSS 215 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 +TL G+NR VRRL VG VS L R G + L L G + L + L+E Sbjct: 216 IVQLTLHSGKNRVVRRLLSEVGHPVSALTRTAIGTLRLG-DLKEGHFRLLTGSDLVKLQE 274 Query: 243 LVEL 246 +V L Sbjct: 275 MVGL 278 >UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1S2_9BACT Length = 241 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 121/245 (49%), Gaps = 10/245 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+L K+L+ AG SRR +I+AGRV+V+G+ V PG ++ DG + Sbjct: 7 ERLVKILSAAGIASRRGAGDLIKAGRVTVNGETV-FEPGFRVAPGDRVEYDGVPV----L 61 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 AE+ + KP G +CT DP D + R + GRLD ++ GL+LF+ D Sbjct: 62 AEERKVYIMLNKPRGYVCTNADPHADLKAVDLIRLTPPLRLFSAGRLDKDSEGLILFSND 121 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+ RL HP E+ + Y VRV + A+L + RGV + G + Sbjct: 122 GDYVARLTHPRHEILKVYQVRVRREFKPAELEQMRRGVLERGELLKVHAVSRCG----DC 177 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 Y +TL EG+NRE+RRL A+G RL R++ G + L GLP G W EL A+ Sbjct: 178 TYLITLNEGKNREIRRLTAALGSPTRRLKRLQIGALRLG-GLPVGNWRELTPAEIALTLR 236 Query: 243 LVELP 247 E P Sbjct: 237 SGEQP 241 >UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIW4_9FIRM Length = 237 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 104/241 (43%), Gaps = 7/241 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ +R E I GRV+V+G + + D +V I +DG ++ Sbjct: 2 MRLDKYLSERTGLTRSESRKAITKGRVAVNGMVCRKAD-TQVAEDAAIAVDGTPLA---G 57 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFTT 121 + Q + KPEG + D TV D + R GRLD + G +L T Sbjct: 58 SYQKYVYIMLNKPEGVVSASRDKRD-TTVVDLVAADFPRRALFPAGRLDKTSTGFVLLTD 116 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG LA+ L+ P+ V+++Y V + + DA + GV L DG + Sbjct: 117 DGALAHDLLSPAHHVDKQYLVTLDTPLTDAMRAGFAAGVTLADGET-MAPAEAEPAGEDP 175 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 VTL +G +++R++ G V+ L R G + L L G W EL + L+ Sbjct: 176 CVVKVTLHQGVYHQIKRMFGVYGAGVNALHRYAIGGVALDAALAPGQWRELTAEELALLQ 235 Query: 242 E 242 + Sbjct: 236 K 236 >UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SBU8_LEPBA Length = 243 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 73/245 (29%), Positives = 111/245 (45%), Gaps = 10/245 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 E+L KVL G G+R +++ I G V V+G + K PG KI + ++ E Sbjct: 3 KERLDKVLGNYGFGTRSDVKKEIYQGNVKVNGLVVK-------DPGYKITLTDIVVYYDE 55 Query: 62 S-AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKL-RGARWIAVGRLDVNTCGLLLF 119 + + K + DP TV D L + R +GRLD T GLLLF Sbjct: 56 TLNRKEFYYFMMNKAPDCITATEDPR-EKTVMDYLSERHRNMNLFPIGRLDKETEGLLLF 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 TTDG LA+ P VE+EY + V + G+ L+DG Sbjct: 115 TTDGTLAHYYTSPKHFVEKEYYAEISAPVTAFDISQFESGITLDDGYKTLPARLAIPDPS 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 V L EG+ R++RR+++++G +V L RV+ G++ L + L G + EL A+ Sbjct: 175 NPHIATVWLREGKYRQIRRMFQSLGKEVQYLKRVKMGNLELDRDLEVGSYRELTEAEEKI 234 Query: 240 LRELV 244 L+ + Sbjct: 235 LKTKI 239 >UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3IC94_PSEHT Length = 327 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 72/281 (25%), Positives = 128/281 (45%), Gaps = 16/281 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K ++ G SRRE + IE GRV+V+G ++G V+V+ + +DG + Sbjct: 6 RLNKFISDTGFCSRREADKYIEDGRVTVNGIRPEMG--VKVSSTDVVLVDGKTLKAIPKR 63 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 +AY KP G CT + + + + + R +GRLD + GL+ T +G Sbjct: 64 ----VYIAYNKPVGITCTT-ERKIQSNIVKAV--NYPDRIFPIGRLDRPSEGLIFLTNEG 116 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 ++ N+++ E+EY V V ++ + + GV + D + +G + Sbjct: 117 DIVNKILRAGNNHEKEYVVTVDKPLNRQFVAKMGNGVPILDTITKKCKVTQTGAQQ---- 172 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 + + LT+G NR++RR+ E +G +V L RVR ++ L KGL G W L + + Sbjct: 173 FTIILTQGLNRQIRRMCEYLGYEVVTLKRVRIMNVTL-KGLKVGQWRHLTEQEMAIINNS 231 Query: 244 VELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRS 284 + ++ D Q +AV + + S +R Sbjct: 232 IS--DSGKTQEHSVYDEANALQQQSPQAVAKPQKTSDKKRD 270 >UniRef50_A5IXL5 Pseudouridine synthase n=3 Tax=Mycoplasma RepID=A5IXL5_MYCAP Length = 246 Score = 240 bits (614), Expect = 4e-62, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 138/242 (57%), Gaps = 12/242 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++QK++A++G SRR+ E +I G V V+G + +GD+ + +I+++G +I++ ++ Sbjct: 6 RVQKLIAQSGLMSRRDAEKMISKGLVFVNGIKSSIGDKASMN--DEIKVNGKIINLTKNT 63 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + + KP+ + T DP+GR TV D + R + VGRLD NT G+LL TTD Sbjct: 64 --VFKYYLLNKPKNTITTSKDPKGRHTVIDLI--NTSERIVPVGRLDRNTTGVLLLTTDY 119 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 EL N+L HP E+ER Y R+ + + R+L+ G+++ DG +++ + + Sbjct: 120 ELVNKLTHPKYEIERVYRARIDSPLTLKEFRELNAGIEI-DGKMSYQIVDQVDTKS---- 174 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 Y ++L G V++L+E +G V L RV Y ++ + K LP G + EL + + L+ L Sbjct: 175 YLISLHVGSYHHVKKLFEKIGHSVLTLKRVSYANLTVDK-LPEGMYRELTIKEVKNLKLL 233 Query: 244 VE 245 VE Sbjct: 234 VE 235 >UniRef50_B9JSE7 Ribosomal large subunit pseudouridine synthase B n=4 Tax=Alphaproteobacteria RepID=B9JSE7_AGRVS Length = 704 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 93/230 (40%), Positives = 133/230 (57%), Gaps = 7/230 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ K+LARAG SRR++E +I GRV+V+GK+ + T +I +DG I E Sbjct: 83 ERISKLLARAGIASRRDVERMIMEGRVAVNGKVLD-SPVLNATLADRIEVDGEPIRGIER 141 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R+ Y+KP G + T +DPEGRPTVFD LP+ R +++GRLD+NT GLLL T D Sbjct: 142 ----TRLWLYHKPSGLVTTNSDPEGRPTVFDNLPEEL-PRVMSIGRLDINTEGLLLLTND 196 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA L P+ R Y VR +G++D AKL L G+ ++ +G N Sbjct: 197 GGLARVLELPTTGWLRRYRVRAYGEIDQAKLDTLKDGIAVDGVLYGAIDAVLDRSQGHNV 256 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 W + L EG+NRE++ + A+G++V+RLIR+ YG L LP E+ Sbjct: 257 WITMGLREGKNREIKNVLGALGLEVNRLIRISYGPFQLG-DLPESQVQEV 305 >UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A5ZYR1_9FIRM Length = 315 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 142/303 (46%), Gaps = 29/303 (9%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + ++ K L+ AG SRRE + + +AGRV+V GK ++G + ++ +DG + Sbjct: 12 TIRINKYLSAAGVCSRREADQLTDAGRVTVAGK--EIGTGERIPADAEVFLDGRPV---- 65 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 AE +L +YKP G +C+ TV + L R VGRLD ++ GLLL T Sbjct: 66 KAETRQVLLLFYKPRGIVCSTKKQRQETTVTEFLD--YPVRVYPVGRLDKDSEGLLLLTN 123 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+L NR+M E+EY V V ++ + +R +S GV + T+ +G + Sbjct: 124 QGDLVNRIMRAGNYHEKEYEVTVDKKITETFIRKMSSGVPILGTVTRPCTVYKTGDKS-- 181 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +++ LT+G NR++RR+ E +G V L R+R ++ L GL G + E+ + L Sbjct: 182 --FSIILTQGLNRQIRRMCEYLGYHVCTLKRIRIMNLTLD-GLKCGEYREICGDEWKKLN 238 Query: 242 ELV----------------ELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSG 285 EL+ ++ T+ + E +R R +V RS Sbjct: 239 ELIRDSSSETVIRTGGQHGKISGRTNKRTGAEAERSGKGILSGRPGDHEQQRVRRTVRST 298 Query: 286 GRN 288 G+N Sbjct: 299 GKN 301 >UniRef50_C8WBY9 Pseudouridine synthase n=3 Tax=Zymomonas mobilis RepID=C8WBY9_ZYMMN Length = 509 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 96/243 (39%), Positives = 132/243 (54%), Gaps = 7/243 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +++ K+L+RAG SRR IE++IE GR+++DG + +T + +DG + Sbjct: 270 EQRIAKLLSRAGIASRRMIEAMIEEGRIAIDGVTVEK-PATLLTSLDGVTVDGKPV---- 324 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 +A R+ Y+K G L T DPEGR T++DRLP R + VGRLD+NT GLLL TT Sbjct: 325 NAPTETRLFLYHKATGLLTTERDPEGRKTIYDRLP-ADLPRVMPVGRLDMNTEGLLLLTT 383 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG L P+ +ER Y RVFG V +L +L GV ++ G N Sbjct: 384 DGGFKRMLELPATHIERCYRARVFGDVSQDQLEELIEGVTIDGIHYGSIDANLERRTGRN 443 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W + L EGRNREVRR+ +G+QVSRLIR+ YG L LP G E+D A + Sbjct: 444 GWVEMKLHEGRNREVRRVLGYLGLQVSRLIRISYGPFLLG-DLPVGAVEEVDPATLKAFK 502 Query: 242 ELV 244 + Sbjct: 503 NTL 505 >UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organisms RepID=Q2W4E4_MAGSA Length = 247 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 78/242 (32%), Positives = 123/242 (50%), Gaps = 22/242 (9%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSV-DGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +L +++A G+GS+R+++++I+AGRV++ DG + G + IR+DG + Sbjct: 15 MRLIRLIANLGYGSQRDVKAMIKAGRVTLADGTVLDDGTKA---AHDDIRVDGEPLDPPP 71 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR---WIAVGRLDVNTCGLLL 118 VL +KPEG C+ +DP V++ LP+ R VGRLD ++ GLLL Sbjct: 72 GL-----VLMLHKPEGYTCSTSDPG--RIVYELLPERFMHRNPIVAPVGRLDRDSTGLLL 124 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG---VQLEDGPAAFKTIKFS 175 T DG LA+R+ P R V + Y V + + + + G ++ E P A + S Sbjct: 125 LTDDGPLAHRITSPKRHVPKTYEVTLARPLSGEEGAVFASGTLMLRSESTPLAPAELVVS 184 Query: 176 GGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLA 235 G + +T+TEGR +V+R++ AVG V RL R G + L L G W L A Sbjct: 185 GPQTA----RITITEGRYHQVKRMFAAVGNHVERLHRAAIGGLDLG-DLAEGQWRPLSPA 239 Query: 236 QT 237 + Sbjct: 240 EI 241 >UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZX4_ACIFD Length = 254 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 125/238 (52%), Gaps = 12/238 (5%) Query: 8 VLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAEQIC 67 +LARAG GSRR +E I GRV ++G++A +G RV ++ DG I+ E E Sbjct: 11 LLARAGCGSRRVLEDAIRDGRVRINGEVATIGARVRPG-VDRVEFDGLEIATEEQRE--- 66 Query: 68 RVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGELAN 127 KP G + + DPEGRPTV + +R VGRLDV++ GLL+ T DG L Sbjct: 67 -YWLLNKPRGVVSSVVDPEGRPTVRSLV--ATTSRVYPVGRLDVDSEGLLILTNDGPLTY 123 Query: 128 RLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQWYNVT 187 +L HP V +EY V V V R+L GV+++ ++ G + + Sbjct: 124 QLTHPRFHVPKEYLVWVDRPVPRRLGRELREGVEVDGELLRASSVGTVGP----RLVRIV 179 Query: 188 LTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRELVE 245 LTEGRNR++RR+ AVG+ V RL+RVR G + + LP G L+ + LR + Sbjct: 180 LTEGRNRQIRRMVGAVGLSVERLVRVRIGPL-VDPHLPPGVARRLEPRELARLRRAIG 236 >UniRef50_Q1YVK2 Pseudouridine synthase n=3 Tax=Gammaproteobacteria RepID=Q1YVK2_9GAMM Length = 235 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 111/239 (46%), Gaps = 13/239 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K ++ A SR E++ I+ G V++D + A G + +V+ I I+G IS E+ Sbjct: 3 RLDKYISNATDLSRVEVKRYIKYGDVTIDDEKAINGAQ-KVSGDETICIEGSAISFAEN- 60 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 R KP G + D T D + + R GRLD++T GLLL T DG Sbjct: 61 ----RYFMLNKPAGVVSATKD-SNNSTALDLIFEHRSDELQIAGRLDIDTTGLLLITDDG 115 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG--PAAFKTIKFSGGEGIN 181 + +RL P + ++ Y V + + L+ GV L+ P T++ E Sbjct: 116 QWNHRLTSPRSDCQKIYRVTLGIPITPDYAEKLANGVWLKGEKHPCLPATMEQIDDE--- 172 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +++ EG+ +V+R++ A+G V L R + G I L + L G + L A+ + Sbjct: 173 -TVLLSIAEGKYHQVKRMFAALGNHVEALHRTQVGGIILDESLEPGDYRALTDAEVASI 230 >UniRef50_D2MQD6 Pseudouridylate synthase n=1 Tax=Bulleidia extructa W1219 RepID=D2MQD6_9FIRM Length = 231 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 121/241 (50%), Gaps = 12/241 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L +VLA A GSR +++++++ GRVSV+GKIA + IRID ++ + Sbjct: 1 MRLDRVLANASVGSRTQVKNMVKNGRVSVNGKIALASSMMVDPNQDVIRIDDEILQYAK- 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + L YKP G + + PTV + +P +G GRLD +T GLLL T D Sbjct: 60 ----YQYLMLYKPAGYISAT-EGRYDPTVLELVPNYKG--LFPCGRLDKDTEGLLLMTND 112 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA+ L+ P + VE+EY V + + + RG++ ++ +K Sbjct: 113 GRLAHNLLSPKKHVEKEYYVEHQLPLSQEDVLCIERGIRYKNITYKGAKLKILDDLQCT- 171 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + L EG+ E++ ++ A+ +V+ L R+R ++ L + L +G + L + L++ Sbjct: 172 ---IILQEGKYHEIKNIFLAIDNKVTYLKRIRMKNLILDETLKKGEYRPLSEEEIGDLKQ 228 Query: 243 L 243 L Sbjct: 229 L 229 >UniRef50_Q14P18 Pseudouridine synthase n=2 Tax=Mollicutes RepID=Q14P18_SPICI Length = 267 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 118/242 (48%), Gaps = 12/242 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKV+A G+ SRR+ E +I GR + +V +I + I + E+ Sbjct: 2 ERLQKVIAAKGYCSRRKAEELIIQGR-VKVNNVVVTTLGTKVGKNDQI---NNQILMNEN 57 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + +I L K + T DP+ R TV + + R VGRLD +T GLLL T D Sbjct: 58 SNKI--YLMLNKRRNCVSTMYDPQHRKTVLTYVKGI-SERIYPVGRLDYDTSGLLLLTND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIKFSGGE 178 GE N + HPS + + Y V + G + +L+ L+ G+++E G A K +K+ + Sbjct: 115 GEFTNIITHPSHIINKTYHVLLSGYLSKQQLQQLATGIEIEPGIIRSQAQAKLVKYEEVK 174 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 + +T+ E +V+++ +++G +V +L R+ G + L + L G W L + Sbjct: 175 NV-SILLLTIHEVTKHQVKKMIQSLGHEVIKLKRIAIGFLQLDETLKPGEWRYLKPKEIK 233 Query: 239 YL 240 Sbjct: 234 RF 235 >UniRef50_Q2SRP5 Ribosomal large subunit pseudouridine synthase B n=3 Tax=Mollicutes RepID=Q2SRP5_MYCCT Length = 252 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 130/247 (52%), Gaps = 13/247 (5%) Query: 1 MS-EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLIS 58 MS E+LQKV++ G+ SRR E +I RV V+ +I KLG V++ P +I ID L++ Sbjct: 1 MSLERLQKVISSRGYCSRRTAEKLILENRVKVNNQIINKLG--VKIDPKAEIIIDNKLVT 58 Query: 59 VRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 + ++ +YKP L T DP+ R TV D L R VGRLD + GLL+ Sbjct: 59 SDSNNQK--YYYLFYKPRLVLTTMYDPKKRKTVADYFKDL-NHRVYPVGRLDYDVSGLLI 115 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED----GPAAFKTIKF 174 T DGEL+N +MHP E + Y GQV+ ++ L +GV +++ + K IK+ Sbjct: 116 MTNDGELSNFIMHPKYEFLKTYQGLCQGQVNKQQVNQLIKGVYIDNNYLTKAYSSKLIKY 175 Query: 175 SGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDL 234 + + +T+ EG+ V++++E++ Q+ +L R R + + L G + EL + Sbjct: 176 DKLKNV-SIVELTINEGKKHHVKKMFESIQAQLLKLKRTRIEFLEID-NLKPGQYRELKV 233 Query: 235 AQTNYLR 241 + L Sbjct: 234 HEIKKLY 240 >UniRef50_A6DF49 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DF49_9BACT Length = 236 Score = 237 bits (605), Expect = 3e-61, Method: Composition-based stats. Identities = 73/243 (30%), Positives = 119/243 (48%), Gaps = 11/243 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVRE 61 ++ K +A G SRR+ E ++ G ++++ ++ +L +V+V ++R + + + Sbjct: 1 MRIAKFIAACGVCSRRKAEELVNEGHITINNHRVTELSTQVDVD-NDEVRYRRKPLVLEK 59 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 KP G +CT +DP D LP R VGRLD + GL++ T Sbjct: 60 KL-----YYLLNKPVGYVCTNDDPFAEKKAIDLLPD--KGRLYTVGRLDKPSEGLIVLTN 112 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDL-SRGVQLEDGPAAFKTIKFSGGEGI 180 DG+LA + HPS E+E++Y V V G+V KL L G+ E + Sbjct: 113 DGDLAKIMTHPSFELEKKYRVTVKGRVSQKKLDYLVRDGLTFEGVNYRVLDARIKKQVPG 172 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N TL EG+NRE+R++ +++ +QV RL R I L K LP G W + ++ +L Sbjct: 173 GYMINFTLNEGKNREIRKICQSLDLQVKRLRRYEIAGIALGK-LPPGAWRPMTQSEVRFL 231 Query: 241 REL 243 + L Sbjct: 232 KSL 234 >UniRef50_A9AXM1 Pseudouridine synthase n=3 Tax=Bacteria RepID=A9AXM1_HERA2 Length = 728 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 101/279 (36%), Positives = 147/279 (52%), Gaps = 13/279 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 61 E+L K LARAG SRR E ++ AGRVSV+G++ +LG +++ IR+DG I+ Sbjct: 2 ERLHKFLARAGVDSRRACEELMLAGRVSVNGRVQRELGTQIDPDKDD-IRVDGEQIT--- 57 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + +KP + T +DPEGR TV D + R VGRLD ++ GLLL T Sbjct: 58 -PPTELHYVLLHKPSSVMTTLHDPEGRQTVADLVK--SHNRLFPVGRLDYDSEGLLLLTD 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+L RL HPS EVE+EY + +LR+ GV+L+DG A I+ Sbjct: 115 DGDLTFRLTHPSFEVEKEYQALLNQTPSVEQLREWRNGVELDDGKTAPAWIELLNETADG 174 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W V + EGRNR++RR+ EA+G++V RLIR+R G + L + L G W L + + LR Sbjct: 175 TWVRVVIHEGRNRQIRRVAEALGLEVRRLIRLREGPLTLGE-LQAGQWRALTPTEIDRLR 233 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSG 280 + S + + + + RR V+R + Sbjct: 234 MHGK----QSKAWTPVRPQENAEGGKPRRQVRRIDRSGQ 268 >UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMJ6_9BACT Length = 239 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 13/242 (5%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +L K++A+ +R E ++ G V V+ K+G + DG ++ RE Sbjct: 7 KIRLDKMIAKCTDLTRSEATRALKNGFVKVNDIPQKVGKSTIDLANDVVTFDGEVLEYRE 66 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFT 120 KP+G +C D TV D LP +R + GRLD++T GL++ T Sbjct: 67 -----TIYFMLNKPKGYVCAAKDER-LKTVLDLLPPALASREPFSCGRLDIDTTGLVILT 120 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL--EDGPAAFKTIKFSGGE 178 DG A+ + P R+ E+ Y V ++ D +R+L +GV L +D A I+ + Sbjct: 121 DDGTWAHGITSPKRKCEKSYLVGSVSELSDEDMRNLEQGVYLDGDDKITAPAKIEKIDEK 180 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 Y + +TEGR +V+R++EAV V L R + G + L L G W +L + Sbjct: 181 ----TYRLKITEGRYHQVKRMFEAVDNMVKSLHREQIGGLSLDDDLDEGNWRDLTAEEVK 236 Query: 239 YL 240 Sbjct: 237 LF 238 >UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q2NSN0_SODGM Length = 235 Score = 236 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 114/235 (48%), Gaps = 8/235 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L++ SR + + A RV+VDG+I K G ++ P ++R DG+L+ Sbjct: 1 MRLDKFLSQQLGVSRALVARELRAKRVTVDGEIIKQGA-FQLRPEHQVRFDGNLL----H 55 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R KP+G +C+ +DP+ PT+ + + + A GRLD++T GL+L T D Sbjct: 56 QILTARYFMLNKPQGYVCSTDDPD-HPTILYFIDEPVPDKLHAAGRLDIDTTGLVLLTDD 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+ + RL P E++Y V + + + G+ L + + + + Sbjct: 115 GQWSYRLTSPRHHCEKDYLVTLEQPLAAEITAQFAAGILLRGEKLPTRPARLATLSPLK- 173 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 +T++EGR +V+R++ AVG +V L R R G I L L G + L + Sbjct: 174 -VRLTISEGRYHQVKRMFAAVGNRVVALHRERIGAIVLDAHLQPGEYRALTAGEV 227 >UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NDY8_LEPBD Length = 228 Score = 236 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 121/241 (50%), Gaps = 13/241 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A G SRR+ + +I GRV+V+ A +G ++V P +RIDG + + Sbjct: 1 MRLNKFIAETGFCSRRKADELINEGRVTVNKHEAIIG--MDVKPEDVVRIDGERVKLNTR 58 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 KP+ LC+ D GR D + AR GRLD T GL++ + D Sbjct: 59 ----YEYYILNKPKRVLCSNEDKFGRRLAVDFIK--SRARLFTYGRLDFMTEGLIIISND 112 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GE+ N +MHP +++ + Y +V +++D + L GV ++ A +K + Sbjct: 113 GEVYNHVMHPRKKLYKSYIAKVSREIEDKDIEALQHGVVIDGKRTAPAKVKKIDKK---- 168 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + EGRNR++R++ E +G V+ L R++ G++ L L G + L+ + YL+ Sbjct: 169 ELRIAIFEGRNRQIRKMLETLGYNVNSLKRIKVGELTLG-NLQVGEYRALNEDEIKYLKS 227 Query: 243 L 243 L Sbjct: 228 L 228 >UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AL84_SEBTE Length = 233 Score = 236 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 116/242 (47%), Gaps = 11/242 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K LA +G G+R+E++ +++ R+SV+ ++ + DG I +E Sbjct: 1 MRIDKFLANSGIGTRKEVKELLKKKRISVNDEVVTEAKTHIDEDNDFVAFDGKRIEFKE- 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK-LRGARWIAVGRLDVNTCGLLLFTT 121 + KP+ + +D R TV D L + L VGRLD +T GLL+ T Sbjct: 60 ----FLYIMLNKPQDVISATDDERHR-TVLDLLEEPLTKVGLFPVGRLDKDTEGLLVLTN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG++A+ L+ P + V + Y V + + + L GV+LE ++F + Sbjct: 115 DGKMAHELLSPKKHVPKRYYVELKKTLSKEEAAILENGVELETFTTKPAKVEFITEDK-- 172 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + ++EG+ +V+R+++ VG +V L R G++ L + L G + EL + L+ Sbjct: 173 --VYIIISEGKYHQVKRMFKCVGNRVLFLKRTGMGNLGLDENLAPGEYRELTSDELEQLQ 230 Query: 242 EL 243 L Sbjct: 231 GL 232 >UniRef50_Q8T866 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q8T866_DICDI Length = 401 Score = 236 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 90/264 (34%), Positives = 139/264 (52%), Gaps = 9/264 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +E++QK+LARAG SRR+ E +I GRV V+GKI K+ + + V P I +D I V + Sbjct: 137 TERIQKILARAGIASRRKAEELIIDGRVKVNGKIIKM-EEILVKPHDIITVDDKPIKVDK 195 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRG-ARWIAVGRLDVNTCGLLLFT 120 ++ ++K L + DP+GR + + K+ G I+VGRLD T GL+LFT Sbjct: 196 P-----KIWMHFKNPQVLTSEYDPDGRDCLLPIIRKVIGIDHLISVGRLDYYTEGLILFT 250 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELA L P R Y VR+FG+ D L++G+ + + +++ Sbjct: 251 NDGELARYLTLPQNLFFRVYKVRIFGKFTDEMKFSLAKGMVINEVFYRPVSVQVESETDS 310 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N W +TL EG+ RE+R L E V+V RLIRV YG LP L G E+ + + L Sbjct: 311 NTWLRITLQEGKKREIRTLLEYFNVKVLRLIRVAYGPYVLPNSLKHGETIEVPIK--DEL 368 Query: 241 RELVELPPETSSKVAVEKDRRRMK 264 + + T +++++++ Sbjct: 369 KPFINKYNSTERLKKTLQEQKKIE 392 >UniRef50_D0J9Y2 Pseudouridine synthase n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J9Y2_BLASP Length = 255 Score = 236 bits (603), Expect = 6e-61, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 111/237 (46%), Gaps = 12/237 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L L+ AG SRRE + +I++G + V+GKI V V I+ G I ++ Sbjct: 17 RLNHYLSNAGITSRREADKLIQSGLIEVNGKIVTKFGTV-VHKNDVIKFHGSRIKNKKKI 75 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + KP+G + + DP R TV + +P + R VGRLD T G+LL T DG Sbjct: 76 -----YILLNKPKGYITSTRDPFNRKTVMNLIPNFQNYRIYPVGRLDRLTTGVLLLTNDG 130 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG-VQLEDGPAAFKTIKFSGGEGINQ 182 + +L HP ++++ Y V + + L + +G + L +G + + Sbjct: 131 FITEKLTHPKYKIQKIYLVVLNKTIHYQDLDKIRQGKIYLNEGRVKIDFL----HKYAKN 186 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + L G NR +RR+++ + QV +L R+ +G K L G W L + ++ Sbjct: 187 IVKIGLHIGWNRVIRRIFKKLTYQVIKLERIHFGGFT-NKNLKIGSWCFLSKQEVDH 242 >UniRef50_C8P302 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P302_ERYRH Length = 229 Score = 236 bits (603), Expect = 6e-61, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 112/238 (47%), Gaps = 11/238 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K LA G G+R++++ +++ G V+V+ + + V ++ + G +S ++ Sbjct: 1 MRLDKFLAHNGFGTRKDVKILVKKGMVTVNHDVVRDAGMVLNLEKDEVFVKGESVSYQKD 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 KP G +C N PE P+V + + VGRLD +T GLLL T D Sbjct: 61 I-----YFMMNKPAGYICEHN-PEMYPSVLELIESYHRDLVF-VGRLDADTEGLLLITND 113 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+ ++R+ H V ++Y V + D +L +G+ L D ++ G Sbjct: 114 GQFSHRVAHSKSNVHKQYYVELDKPFDLRFCEELEKGMMLGDELLKPAQVEVVGERA--- 170 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 ++T+ EG+ +V+R+ A +V+ L R++ G + L L G + +L + N Sbjct: 171 -IHLTIGEGKYHQVKRMMHACDNEVTYLKRIKIGALELDSSLQPGAYRDLSEEEINLF 227 >UniRef50_C7RHU0 Pseudouridine synthase n=3 Tax=Anaerococcus RepID=C7RHU0_ANAPD Length = 233 Score = 236 bits (603), Expect = 6e-61, Method: Composition-based stats. Identities = 63/241 (26%), Positives = 126/241 (52%), Gaps = 12/241 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 61 ++ K +A +G+ SRR+ + +++ G+V V+G+ +LG +++ + IDG ++ + E Sbjct: 1 MRINKYIASSGYTSRRKADDLVKKGKVKVNGETTHELG--LDIKDSDVVEIDGKVLEIEE 58 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + YKP G + + DP + D + R+ A GRLD ++ GLL+ T Sbjct: 59 KI-----YIKLYKPRGYITSNFDPYNDRDLNDLVK--LDQRFFAAGRLDKDSEGLLIITN 111 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG N+++HPS+++++ Y VRV ++ + + G+ + D + + + + Sbjct: 112 DGIFTNQIIHPSKKLDKTYIVRVSRLLNKEECQQFESGIDIGDSEMTSDS-RIELIDKTS 170 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + Y VT+ +G NR++RR++ +V L R+ G I L G+ D A+ +++R Sbjct: 171 KTYKVTIHQGYNRQIRRMFAYFSSEVKMLKRISIGPIKLD-GMKPYEKRNFDQAEMDFVR 229 Query: 242 E 242 + Sbjct: 230 K 230 >UniRef50_Q2G8T2 Pseudouridine synthase n=5 Tax=Sphingomonadales RepID=Q2G8T2_NOVAD Length = 270 Score = 236 bits (603), Expect = 6e-61, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 131/245 (53%), Gaps = 9/245 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ K+LARAG SRRE+E +IE GRV + ++ +T + +DG ++ Sbjct: 30 RIAKLLARAGIASRREVERMIEEGRVKIGDEVVTT-PATLLTSLKGVSVDGKPVAPMAPP 88 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRG---ARWIAVGRLDVNTCGLLLFT 120 R+ ++KP G + DP GRPT++ L R + VGRLDVNT GLLL T Sbjct: 89 ----RLFRFHKPSGLITAERDPTGRPTIYTALRNALPQGTPRVMPVGRLDVNTEGLLLMT 144 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGEL L PS + R Y R FG + A+L +L G++++ G Sbjct: 145 NDGELKRALELPSTGIPRTYRARTFGDISQARLEELMEGIEIDGVRYGSINANLERSAGR 204 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+W +TLTEG+NREVRR+ E +G+QVSRL+R +YG L LPRG E+ Sbjct: 205 NKWIELTLTEGKNREVRRVLEHLGLQVSRLLRTKYGPFELA-DLPRGAAEEIPQVMVERF 263 Query: 241 RELVE 245 R+ ++ Sbjct: 264 RKTLK 268 >UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EB54_9CLOT Length = 248 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 9/244 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M ++ K L+ +R + + ++ AGRV V+G K D G +IR+DG + + Sbjct: 1 MKIRIDKFLSTQAIATRSQAKEMLRAGRVLVNGTPVKAADLKVDPEGDEIRVDGRVYGYQ 60 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLF 119 E L KP+G + +D R TV D +P R GRLD +T G +L Sbjct: 61 EHL-----YLMLNKPQGVVSATDDKVHR-TVLDLVPPELRRRGLFPAGRLDRDTVGFVLI 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGE 178 T DGE A+ ++ P V + Y + G + + +L L++GV L DG + Sbjct: 115 TDDGEFAHNILSPRHHVPKTYEAGLDGPIGENELSVLAQGVVLGDGTKCRPAELTVLQS- 173 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 G + + EGR +++R++ AVG +V L R + G + L L G + + Sbjct: 174 GERPLIQIVIVEGRYHQIKRMFAAVGRRVLTLKRTKIGGLALDPSLKEGDCIAISPSNLE 233 Query: 239 YLRE 242 ++ Sbjct: 234 KIQM 237 >UniRef50_UPI00006CCA31 conserved hypothetical protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CCA31 Length = 484 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 5/227 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 E+L K L+R+G SRR+ E +I+ G + VDGK+A + VTP I I Sbjct: 175 EERLSKYLSRSGVCSRRQAEKMIKDGLIKVDGKVAT--SNLPVTPKNNIEIFTQRGEKFA 232 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL---PKLRGARWIAVGRLDVNTCGLLL 118 +Q ++ +YKP G +C+ +DP RP+VF+ + K++ IAVGRLD N+ GL+L Sbjct: 233 PVKQNAKIWIFYKPRGMICSHDDPLKRPSVFNYIYNNTKIKEPHIIAVGRLDYNSEGLIL 292 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG++A L P + R+Y VRV G++D+ KL L +G + ++ + Sbjct: 293 LTNDGDIAQCLEQPESNIYRQYRVRVQGELDERKLLKLRQGTVINGVQYGPFNVEIDKRQ 352 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLP 225 N W V L G+NRE+R++ + ++VSRL R+ YG + LP Sbjct: 353 SSNTWLTVGLYTGKNREIRKVMQKFDLRVSRLKRLSYGPYKIGSMLP 399 >UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus RepID=Q1J642_STRPF Length = 244 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 9/241 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L G G+R +++ +++ + V+ K+ + G + Sbjct: 2 MRLDKFLVATGVGTRSQVKLLLKKKAIFVNQKVETSAKAHIDEYKDLVTYQGTPL----- 56 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFTT 121 + KP G + D + + TV + L + VGRLD +T GLLL T Sbjct: 57 VYESFVYYLLNKPSGYVSATQDRQ-QATVMELLDDTARQKTVFPVGRLDKDTRGLLLLTN 115 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF--SGGEG 179 +G+LA+ L+ P + V +EY +V G + +A +RG+ L+D ++ S + Sbjct: 116 NGQLAHDLLSPKKHVTKEYLAKVAGIMTEADKDYFARGISLKDHQCLPAHLEVLASDLQQ 175 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +T+ EG+ +V+R+ A G +V L R+ G + L L G + L + Sbjct: 176 QTSLVKITIQEGKFHQVKRMVAACGKEVLDLQRLSMGPLKLDPSLAEGEFRRLTPEELQS 235 Query: 240 L 240 L Sbjct: 236 L 236 >UniRef50_B8ETE9 Pseudouridine synthase n=1 Tax=Methylocella silvestris BL2 RepID=B8ETE9_METSB Length = 676 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 95/255 (37%), Positives = 142/255 (55%), Gaps = 11/255 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ KV+ARAG SRR+ E++I GRV+++G I + + V P I IDG ++ R Sbjct: 25 ERIAKVIARAGACSRRDAETLISEGRVALNGAIL-ISPAINVGPDDVILIDGAPLAERAR 83 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRG--ARWIAVGRLDVNTCGLLLFT 120 R+ ++KP G + T +DPEGRPTVFD + + R +++GRLD+NT GLLL T Sbjct: 84 ----TRLFLFHKPRGLVTTEHDPEGRPTVFDYVREHSPEAPRLVSIGRLDINTEGLLLLT 139 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG LA L P+ R Y VR G +D L L +GV +E A +G Sbjct: 140 NDGGLARVLELPATGWARRYRVRAKGSIDQPTLDRLRQGVTVEGVDYAQIEATLDRIQGA 199 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N W ++L EG+NRE++R+ E +G++V+RLIR+ YG L L G ++ +T L Sbjct: 200 NCWLTMSLREGKNREIKRVLEHLGLEVNRLIRLSYGPFQLA-DLEEGK---VEEVRTRVL 255 Query: 241 RELVELPPETSSKVA 255 R+ + ++ V Sbjct: 256 RDQLGAALAEAAAVD 270 >UniRef50_C9LMR9 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMR9_9FIRM Length = 239 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 132/246 (53%), Gaps = 12/246 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISV 59 M E+LQK+L+ AG SRR+ E +I AGRV V+G++ +LG +V KI G ++ Sbjct: 1 MKERLQKILSHAGVCSRRKAEELILAGRVRVNGRVVRELGTEADVC-TDKIEALGEIVKP 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 R ++KP+ + + +DP GR TV D ++R R VGRLD ++ GLLL Sbjct: 60 EP-----LRYYLFHKPDCVITSVSDPAGRRTVMDYFRRVR-ERVFPVGRLDYHSEGLLLV 113 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSG--G 177 T DG+L L HP EV++EY V V G+ + + + +GV+++ G A I+ G Sbjct: 114 TNDGQLDFILTHPCHEVQKEYEVVVRGKFSEKLAKKMEKGVKIDSGVTAPCEIEVLGYDA 173 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 E + L EG+NRE+R++ E V L R+RY + L + RG + L A+ Sbjct: 174 EKNKTRLRMVLHEGKNREIRKMMEIFHYPVFELKRIRYSFLTL--DVNRGQYRRLTAAEV 231 Query: 238 NYLREL 243 L EL Sbjct: 232 KKLYEL 237 >UniRef50_A8I6C3 Pseudouridine synthase n=6 Tax=Alphaproteobacteria RepID=A8I6C3_AZOC5 Length = 717 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 102/258 (39%), Positives = 140/258 (54%), Gaps = 10/258 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +E++ KV+ARAG GSRREIE I AGRVSV+G++ VT +IR+DG + RE Sbjct: 29 AERIAKVIARAGLGSRREIEEWITAGRVSVNGEVL-ASPAFTVTAEDEIRVDGEPLPERE 87 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 R+ Y+KP G + T DPEGR T+F+ LP R ++VGRLD+N+ GLLL T Sbjct: 88 R----TRLFLYHKPIGVVTTNRDPEGRTTLFELLPG-HLPRLVSVGRLDINSEGLLLLTN 142 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG LA L P R Y VR G VD A+L L +G+ +E +G N Sbjct: 143 DGGLARVLELPETGWLRRYRVRAKGTVDQAQLDALIKGIVVEGVEYGPIEAVLDRVQGAN 202 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W V L EG+NREVR + A+G+QV+RLIR+ YG L + G ++ +T LR Sbjct: 203 VWITVALREGKNREVRNVLGALGLQVNRLIRISYGPFQLGEIAEGG----VEEVRTRILR 258 Query: 242 ELVELPPETSSKVAVEKD 259 + + ++ Sbjct: 259 DQIGNDIAAAAGADFNGP 276 >UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P160_ERYRH Length = 262 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 64/246 (26%), Positives = 125/246 (50%), Gaps = 12/246 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 S +L K ++ +G+ SRR+ + I G V++DG A +G +V PG ++ ++G+ +++ + Sbjct: 25 SLRLNKYISDSGYCSRRQADRFIAEGVVAIDGVTATVGQ--QVLPGQRVTVEGNHVTIDD 82 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 +A KP G CT D + D + +GRLD ++ GL+L T Sbjct: 83 EK----VYIALNKPRGITCTT-DGAIEGNISDFM--NYPKMIFPIGRLDKDSSGLILLTN 135 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGG--EG 179 DG++ N+++ ++EY V V +D+ + +S+GV++ + + + Sbjct: 136 DGDIVNKILREEYGHDKEYIVSVNKTIDEDFITKMSKGVEIYNQQTHRMQVTNPSDVEQV 195 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + + + L +G NR++RR+ +A+G +V+ L RVR +I L L G W L + + Sbjct: 196 APKTFRIVLNQGLNRQIRRMTKALGFKVTTLNRVRIMNINLG-DLKVGEWRYLSVHELEE 254 Query: 240 LRELVE 245 + ++ Sbjct: 255 MNRRIQ 260 >UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae RepID=C6VP86_LACPJ Length = 246 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 112/250 (44%), Gaps = 12/250 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K L G+R ++ +I+ G ++ +G+ G + + +D + ++ Sbjct: 1 MRVDKFLHAMRIGTRTQVRRLIKDGHITANGEPVISGKQQINPGSDTVFLDDVQVRYQQ- 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKL-RGARWIAVGRLDVNTCGLLLFTT 121 KP G + D TV D VGRLD +T G+L+ T Sbjct: 60 ----YFYYVMNKPVGVITATTDSAA-KTVMDLFNTTDFRDDLFPVGRLDKDTEGILVITN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG----PAAFKTIKFSGG 177 DG L++ L+ P+ V + Y V G++ A+L + + G+ L+DG PA + ++F Sbjct: 115 DGALSHDLLSPNHHVTKVYEAEVTGEITAAQLANFNDGITLKDGTELQPAQAEIVQFHEI 174 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 E + + EG+ +V+R+ +G +V L R+++G + LP GL G + L + Sbjct: 175 ENFTT-IRIMIHEGKYHQVKRMVGTLGERVVGLRRIKFGSLTLPVGLLAGNYRALTDDEL 233 Query: 238 NYLRELVELP 247 L+ P Sbjct: 234 TALKADANQP 243 >UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacteria RepID=A1U6Q2_MARAV Length = 231 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 112/237 (47%), Gaps = 9/237 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + L+ SR+E + ++ AGRV VDG+ + +R +V + +DG ++ Sbjct: 1 MRLDQYLSNGTELSRKEAKKVVSAGRVKVDGETCRQANR-QVEAEQSVHLDGKPVNPPGD 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 L +KP G L D +PT D LP+ +R GRLD +T GLLL T+D Sbjct: 60 I-----YLMMHKPAGVLSATTDSS-QPTALDLLPRGLASRVHIAGRLDKDTTGLLLLTSD 113 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+ ++ + P RE + Y V + + + R L +GV L + + NQ Sbjct: 114 GQWSHAVTSPRRECRKSYRVWLAEAIPEQACRALEKGVMLNGETTETRPAEVRVHN--NQ 171 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 ++T+ EGR +V+R+ AVG +V L R R G I L L G + L + Sbjct: 172 LIDLTIGEGRYHQVKRMLAAVGNRVEALHRFRIGSIELDDKLAPGEFRALTYQEIRS 228 >UniRef50_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K31 RepID=B0T1Z8_CAUSK Length = 501 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 107/291 (36%), Positives = 152/291 (52%), Gaps = 16/291 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ K+LARAG SRR +E +IE GRV+++G++ ++V PG + +DG +I E+ Sbjct: 25 RVAKMLARAGVASRRAVERLIEDGRVALNGEVLTT-PAIKVRPGDILTVDGKMIDEPEA- 82 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 RV Y+KP G + T NDP+ RPTVF LP+ R I+VGRLD+N+ GLLL T DG Sbjct: 83 ---TRVFRYHKPSGLMTTHNDPKQRPTVFQALPRDL-PRLISVGRLDLNSEGLLLLTNDG 138 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE----- 178 L+ L P R Y R FG AKL L G +E + + Sbjct: 139 ALSRALEMPQNAWVRRYRARAFGDTTQAKLDKLKDGCTVEGVRYGPIEARLDKAQEKAGG 198 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 G N W +TL+EG+NREVRR+ E++G++V+RLIR+ YG L LP G E+ Sbjct: 199 GKNIWITLTLSEGKNREVRRVLESIGLKVNRLIRLSYGPFALGTLLP-GQVEEVGP---R 254 Query: 239 YLRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNN 289 +REL+E + +K + + +AV RR R N Sbjct: 255 VIRELLEGIVAEENMPKGDKPQ-FIGVADPLKAVGTAGGGDMQRRGVPRTN 304 >UniRef50_A0M7H0 Ribosomal large subunit pseudouridine synthase F n=4 Tax=Flavobacteriales RepID=A0M7H0_GRAFK Length = 295 Score = 234 bits (598), Expect = 3e-60, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 115/238 (48%), Gaps = 10/238 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A +G SRR+ + I AG V+V+GK I ++G RV++ +R DG ++ + Sbjct: 64 RLNKYIANSGVCSRRDADMYIAAGNVTVNGKSITEMGYRVKLE--DDVRFDGRRLNPEKP 121 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP G T N +G TV + + + A+ VG+LD GLLLFT D Sbjct: 122 E-----YILLNKPAGFFVTGNPEKGGKTVMELVARTTSAKVSPVGKLDNQAKGLLLFTND 176 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA +L P + + Y V + + L + +GV +E +I F + N+ Sbjct: 177 GTLAKKLAKPKNGIRQIYQVTLNKNLTKEDLEGIEKGVYIEGSKVLITSISFIEDKPHNE 236 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + L + V R+++++G +V L RV +G + K LPRG L + L Sbjct: 237 -VGIELYSIKEHIVTRIFKSLGYEVESLDRVVFGGLT-KKDLPRGRHRNLTKQEVINL 292 >UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni RepID=Q04F57_OENOB Length = 237 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 69/243 (28%), Positives = 120/243 (49%), Gaps = 13/243 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQK +A+AG SRR+ E +I G+V V+GKI KLG +V + + +D I+ Sbjct: 5 ERLQKRIAQAGVASRRKAEEMIVNGQVKVNGKIITKLGKKV--SSDDIVYVDNKKIN--- 59 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 E+ KP G + + +P+V + + R +VGRLD +T G+LL T Sbjct: 60 --EESFEYYLLNKPAGYVSSNRSYPNQPSVIELIK--TKTRIFSVGRLDQDTTGVLLLTN 115 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPA--AFKTIKFSGGEG 179 DGEL +L HP ++R YA V G V++ ++ L++ ++ + I + Sbjct: 116 DGELTQKLTHPKHRIKRTYAAWVKGIVNEDEIEQLTKPIRFDGEIYFPQAARILKVDQKR 175 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +T+ EG+N E++++ + +G V +L R + I + L +G L + Sbjct: 176 QESLIEITIAEGKNHEIKKILDFIGHPVIKLNRDMFDGITIG-NLKKGQHRALSEQEVEK 234 Query: 240 LRE 242 ++ Sbjct: 235 IKR 237 >UniRef50_O05668 Uncharacterized RNA pseudouridine synthase ML1370 n=49 Tax=Actinomycetales RepID=Y1370_MYCLE Length = 256 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 122/248 (49%), Gaps = 9/248 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVR 60 + +LQK+L+RAG SRR E +I GRV VDG++ +LG RV+ + + V+ Sbjct: 15 AVRLQKILSRAGIASRRAAEKLIIEGRVEVDGQLVRELGTRVDPDVSVV-----RVDGVK 69 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLR--GARWIAVGRLDVNTCGLLL 118 + LA KP G T +D GRP V D + + + VGRLD +T GL+L Sbjct: 70 VVVDDSLVYLALNKPRGMYSTMSDDRGRPCVGDLIERRVRGNKKLFHVGRLDADTEGLIL 129 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DGELA+RLMHPS EV + Y V G V + LS G++L+DGPA Sbjct: 130 LTNDGELAHRLMHPSHEVSKTYLATVKGAVPRGLGKKLSVGLELDDGPAHVDDFAVVDAI 189 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 +TL EGR R VRRL A G V L+R G + L G L + Sbjct: 190 PGKTLVRLTLHEGRKRIVRRLLTAAGFPVEMLVRTDIGAVSLG-DQRPGCLRALLRDEIR 248 Query: 239 YLRELVEL 246 L + V L Sbjct: 249 QLYKEVGL 256 >UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A n=25 Tax=Gammaproteobacteria RepID=RSUA_PSEAE Length = 230 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 110/237 (46%), Gaps = 12/237 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + LA SRR+ + +I G + VDG++ + G EV ++ +D L+ + Sbjct: 1 MRLDRFLANLPELSRRDAQMLIAGGHLRVDGQVVRDGTH-EVRVFSRVELDERLLQAGKP 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 A R +KP G + DP+ PTV D P+ GRLD NT GL+L T D Sbjct: 60 A----RYYMLHKPMGCVSATRDPQ-HPTVLDLFPEDLRDDLHIGGRLDYNTTGLMLLTND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGV--QLEDGPAAFKTIKFSGGEGI 180 G+ + RL P ++ Y V +D + + G+ + ED ++ G Sbjct: 115 GQWSRRLTLPGSRRDKVYYVETEAPIDQRYVDAFAAGLHFRFEDLVTLPAQLEPIGP--- 171 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 + +TL EGR +V+R++ +V RL R R GDI L LP G W L+ + Sbjct: 172 -RCARLTLHEGRYHQVKRMFGHFDNKVLRLHRERMGDICLDPQLPPGAWRPLNAEEI 227 >UniRef50_B5ELL5 Pseudouridine synthase n=3 Tax=Acidithiobacillus RepID=B5ELL5_ACIF5 Length = 268 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 87/238 (36%), Positives = 117/238 (49%), Gaps = 8/238 (3%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAE 64 L ++L++AG SR I AGRV VDG+ + G IRIDG I+ Sbjct: 26 LARILSKAGLCSRTVAVEWIRAGRVEVDGRRILDPEARFPLSGPGIRIDGLDITAS---- 81 Query: 65 QICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGE 124 +VL +KP G L TR D GR TV+D LP VGRLD + GLLLF+ D Sbjct: 82 -TRQVLLLHKPRGVLTTRQDERGRATVYDLLPGSPW--LAPVGRLDQASSGLLLFSNDPH 138 Query: 125 LANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQWY 184 A RL+ P + V + Y V++ + + L+ L+ P I+ G QW Sbjct: 139 WAQRLLDPDQHVAKTYHVQIRPPLSTDTVVQLAADSVLDGEPCLPMQIRELRCGGKTQWL 198 Query: 185 NVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 L EGRNR++RRL A +V RLIRV G++PL + L G W L + LR+ Sbjct: 199 EFILQEGRNRQIRRLLAACDREVLRLIRVAVGNLPLGE-LRAGEWRWLHSGEEELLRQ 255 >UniRef50_A8U4V7 Pseudouridine synthase n=10 Tax=Lactobacillales RepID=A8U4V7_9LACT Length = 239 Score = 233 bits (596), Expect = 4e-60, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 115/242 (47%), Gaps = 10/242 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGL-KIRIDGHLISVRE 61 +L K+L G GSRR ++ ++++ +V V+G+ + D + V P L ++ + G I + Sbjct: 1 MRLDKLLFETGFGSRRTVKRLLKSKQVQVNGQTI-MVDSLNVDPQLQEVTVAGVPIDYQP 59 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL-PKLRGARWIAVGRLDVNTCGLLLFT 120 +KP G + +D + TV D + P R VGRLD +T GLLL T Sbjct: 60 HV-----YYMLHKPAGVVSAVSDAVNQ-TVIDLIEPSQRVPGLFPVGRLDKDTEGLLLLT 113 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGP-AAFKTIKFSGGEG 179 +G+L +L+ P +EV + Y V V +V D + G+ + G + Sbjct: 114 NNGQLGYQLLIPKKEVTKCYEVVVNERVTDDDQLAFTAGIVFDGGVICKPAQLTILSQSD 173 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + ++EG+ +V++++ +VG +V L R+ G + L K L G + L + Sbjct: 174 TESRVLLEISEGKFHQVKKMFLSVGKKVIYLKRLSMGPLQLDKTLSLGSYRPLHAEELVA 233 Query: 240 LR 241 L+ Sbjct: 234 LK 235 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B... 327 2e-88 UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B... 302 7e-81 UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadale... 301 2e-80 UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyr... 299 9e-80 UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=... 294 2e-78 UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter Rep... 294 3e-78 UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B... 293 4e-78 UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacter... 293 5e-78 UniRef50_Q87NB7 Ribosomal large subunit pseudouridine synthase B... 290 3e-77 UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3... 290 5e-77 UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B... 287 3e-76 UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria Re... 286 7e-76 UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q2... 286 7e-76 UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium c... 285 1e-75 UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 285 1e-75 UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 283 5e-75 UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium r... 283 7e-75 UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ... 282 1e-74 UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 281 2e-74 UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8... 280 3e-74 UniRef50_B6EJI1 Pseudouridine synthase n=8 Tax=Gammaproteobacter... 280 4e-74 UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 279 1e-73 UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 278 1e-73 UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibac... 278 1e-73 UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2... 278 2e-73 UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_14... 278 2e-73 UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 278 2e-73 UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 277 2e-73 UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutac... 277 2e-73 UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 277 3e-73 UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 277 4e-73 UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomona... 277 4e-73 UniRef50_A5WGV6 Pseudouridine synthase n=7 Tax=Moraxellaceae Rep... 277 5e-73 UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 276 6e-73 UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 276 6e-73 UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9... 276 7e-73 UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter... 276 8e-73 UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr03... 275 1e-72 UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uen... 275 1e-72 UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria R... 274 3e-72 UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales Rep... 273 4e-72 UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax... 273 4e-72 UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wo... 273 6e-72 UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 273 7e-72 UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 272 8e-72 UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 272 9e-72 UniRef50_Q1H048 Pseudouridine synthase n=4 Tax=Betaproteobacteri... 272 1e-71 UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrional... 271 2e-71 UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C... 271 2e-71 UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=... 271 2e-71 UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3... 271 2e-71 UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria Re... 271 2e-71 UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria Re... 270 3e-71 UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72... 270 3e-71 UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria R... 270 4e-71 UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter the... 270 5e-71 UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia ... 270 5e-71 UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae... 270 5e-71 UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B... 270 5e-71 UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gin... 269 7e-71 UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formi... 268 1e-70 UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales Rep... 268 1e-70 UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae Re... 268 1e-70 UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 268 2e-70 UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine syn... 268 2e-70 UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales Re... 268 2e-70 UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium Rep... 268 2e-70 UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae Re... 267 2e-70 UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 267 3e-70 UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID... 267 3e-70 UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1... 267 3e-70 UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepI... 267 3e-70 UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1... 267 4e-70 UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 267 4e-70 UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales ... 266 6e-70 UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID... 266 7e-70 UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0... 265 9e-70 UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5... 265 1e-69 UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3... 265 1e-69 UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae... 265 1e-69 UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula m... 264 2e-69 UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A... 264 2e-69 UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 264 3e-69 UniRef50_B6BUN1 Pseudouridine synthase n=1 Tax=beta proteobacter... 264 3e-69 UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta... 264 3e-69 UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter hepari... 264 3e-69 UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae Rep... 263 3e-69 UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 263 4e-69 UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 263 4e-69 UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limn... 263 5e-69 UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q0... 263 5e-69 UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium Re... 263 6e-69 UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 263 7e-69 UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 262 8e-69 UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces uroge... 262 8e-69 UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 262 8e-69 UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium R... 262 9e-69 UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae ... 262 1e-68 UniRef50_B9ZS86 Pseudouridine synthase n=2 Tax=Chromatiales RepI... 262 1e-68 UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A... 262 1e-68 UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales R... 262 1e-68 UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii ... 261 2e-68 UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 261 3e-68 UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus Rep... 260 4e-68 UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae... 260 4e-68 UniRef50_A5CX60 Pseudouridine synthase n=1 Tax=Candidatus Vesico... 260 4e-68 UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organism... 260 4e-68 UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterinea... 260 4e-68 UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapol... 260 5e-68 UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytop... 260 5e-68 UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 260 6e-68 UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marin... 260 6e-68 UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 260 6e-68 UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales R... 260 6e-68 UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi A... 259 6e-68 UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. ... 259 7e-68 UniRef50_Q89AL1 Ribosomal large subunit pseudouridine synthase B... 259 7e-68 UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroid... 259 9e-68 UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae... 259 1e-67 UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1... 258 1e-67 UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A... 258 1e-67 UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5... 258 1e-67 UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium si... 258 2e-67 UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter rube... 258 2e-67 UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q... 258 2e-67 UniRef50_Q5F8V3 Pseudouridine synthase n=21 Tax=Proteobacteria R... 257 3e-67 UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0... 256 5e-67 UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 256 5e-67 UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus Re... 256 5e-67 UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vag... 256 7e-67 UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracel... 256 7e-67 UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter fl... 256 8e-67 UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actino... 255 1e-66 UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine syn... 255 1e-66 UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 255 1e-66 UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae Rep... 255 1e-66 UniRef50_B4RM91 Pseudouridine synthase n=8 Tax=Betaproteobacteri... 255 1e-66 UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium R... 255 1e-66 UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi... 255 2e-66 UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 255 2e-66 UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 255 2e-66 UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 255 2e-66 UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes Rep... 254 2e-66 UniRef50_D0L0G8 Pseudouridine synthase n=1 Tax=Halothiobacillus ... 254 3e-66 UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (... 254 3e-66 UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 253 4e-66 UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 253 5e-66 UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenen... 253 6e-66 UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A... 253 6e-66 UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacte... 253 7e-66 UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gas... 252 8e-66 UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 252 9e-66 UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria Rep... 252 1e-65 UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter ... 251 1e-65 UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 251 2e-65 UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B... 251 2e-65 UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovib... 251 2e-65 UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus Re... 251 2e-65 UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 251 2e-65 UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG ... 251 2e-65 UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7... 251 2e-65 UniRef50_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris ... 251 3e-65 UniRef50_C6AV89 Pseudouridine synthase n=17 Tax=Rhizobiaceae Rep... 250 3e-65 UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae Re... 250 3e-65 UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium R... 250 4e-65 UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6... 250 4e-65 UniRef50_A6EPE0 Pseudouridine synthase n=1 Tax=unidentified euba... 250 4e-65 UniRef50_Q21MN5 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q2... 250 6e-65 UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alex... 249 8e-65 UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 249 8e-65 UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (c... 249 9e-65 UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indi... 249 1e-64 UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succi... 248 1e-64 UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F... 248 1e-64 UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 248 2e-64 UniRef50_C8P302 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 248 2e-64 UniRef50_A8U4V7 Pseudouridine synthase n=10 Tax=Lactobacillales ... 248 2e-64 UniRef50_D0BMY5 Pseudouridine synthase n=1 Tax=Granulicatella el... 248 2e-64 UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Rumi... 247 3e-64 UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 247 3e-64 UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 247 3e-64 UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=... 247 4e-64 UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin51... 247 4e-64 UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae ... 246 5e-64 UniRef50_Q7VBH8 Pseudouridine synthase n=1 Tax=Prochlorococcus m... 246 5e-64 UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organism... 246 8e-64 UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodi... 246 8e-64 UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine... 246 9e-64 UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F... 245 1e-63 UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termit... 245 1e-63 UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum v... 245 1e-63 UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 245 1e-63 UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 245 1e-63 UniRef50_A9MDW0 Pseudouridine synthase n=43 Tax=Rhizobiales RepI... 245 2e-63 UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteracea... 245 2e-63 UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacter... 244 2e-63 UniRef50_B7L142 Pseudouridine synthase n=9 Tax=Alphaproteobacter... 244 2e-63 UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum fe... 244 2e-63 UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=... 244 2e-63 UniRef50_P42395 Ribosomal large subunit pseudouridine synthase B... 244 2e-63 UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methy... 244 2e-63 UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3... 244 3e-63 UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 244 3e-63 UniRef50_C4XEA6 Pseudouridine synthase n=1 Tax=Mycoplasma fermen... 244 3e-63 UniRef50_C9LMF3 Ribosomal small subunit pseudouridine synthase A... 244 3e-63 UniRef50_D2MQD6 Pseudouridylate synthase n=1 Tax=Bulleidia extru... 243 5e-63 UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=... 242 8e-63 UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni R... 242 8e-63 UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflex... 241 2e-62 UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae ... 241 2e-62 UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 241 2e-62 UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 241 3e-62 UniRef50_Q0G3T3 Pseudouridine synthase n=4 Tax=Alphaproteobacter... 240 3e-62 UniRef50_Q4A5Z2 Pseudouridine synthase n=2 Tax=Mycoplasma synovi... 240 3e-62 UniRef50_C1XNC4 Pseudouridine synthase n=1 Tax=Meiothermus ruber... 240 4e-62 UniRef50_Q1YVK2 Pseudouridine synthase n=3 Tax=Gammaproteobacter... 240 4e-62 UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepI... 240 4e-62 UniRef50_Q1LJQ9 Pseudouridine synthase n=3 Tax=Burkholderiales R... 240 5e-62 UniRef50_B1X5I1 Pseudouridine synthase, Rsu n=1 Tax=Paulinella c... 240 6e-62 UniRef50_UPI0000D52F9C putative ribosomal large subunit pseudour... 240 6e-62 UniRef50_A6DF49 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 240 7e-62 UniRef50_D1R854 Pseudouridine synthase n=4 Tax=Chlamydiales RepI... 239 1e-61 UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bac... 239 1e-61 UniRef50_Q21JF0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 239 1e-61 UniRef50_Q14P18 Pseudouridine synthase n=2 Tax=Mollicutes RepID=... 239 1e-61 UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales Rep... 239 1e-61 UniRef50_A3JEU2 Pseudouridine synthase n=2 Tax=Marinobacter RepI... 238 1e-61 UniRef50_D0J9Y2 Pseudouridine synthase n=1 Tax=Blattabacterium s... 238 1e-61 UniRef50_A9AXM1 Pseudouridine synthase n=3 Tax=Bacteria RepID=A9... 238 1e-61 UniRef50_UPI00006CCA31 conserved hypothetical protein n=1 Tax=Te... 238 2e-61 UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacter... 238 2e-61 UniRef50_B9E1X9 Pseudouridine synthase n=39 Tax=Clostridium RepI... 238 2e-61 UniRef50_A7VSS7 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 237 3e-61 UniRef50_C0QWY7 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 237 3e-61 UniRef50_Q73PD9 Pseudouridine synthase n=1 Tax=Treponema dentico... 236 5e-61 UniRef50_A5IXL5 Pseudouridine synthase n=3 Tax=Mycoplasma RepID=... 236 5e-61 UniRef50_Q13BM8 Pseudouridine synthase n=55 Tax=Alphaproteobacte... 236 5e-61 UniRef50_Q1RJR2 Uncharacterized RNA pseudouridine synthase RBE_0... 236 5e-61 UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredi... 236 6e-61 UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepI... 236 6e-61 UniRef50_C9LMR9 Pseudouridine synthase n=1 Tax=Dialister invisus... 236 8e-61 UniRef50_B0B8U9 Pseudouridine synthase n=10 Tax=Chlamydiales Rep... 236 9e-61 UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 236 1e-60 UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vaden... 235 1e-60 UniRef50_A8SIK9 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 235 1e-60 UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A... 235 1e-60 UniRef50_O05668 Uncharacterized RNA pseudouridine synthase ML137... 235 1e-60 UniRef50_Q8T866 Putative uncharacterized protein n=1 Tax=Dictyos... 235 2e-60 UniRef50_C6XHY6 Pseudouridine synthase n=1 Tax=Candidatus Liberi... 235 2e-60 UniRef50_C6XQT2 Pseudouridine synthase n=1 Tax=Hirschia baltica ... 235 2e-60 Sequences not found previously or not previously below threshold: >UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B n=117 Tax=Bacteria RepID=RLUB_ECO57 Length = 290 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 289/290 (99%), Positives = 289/290 (99%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR Sbjct: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT Sbjct: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI Sbjct: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL Sbjct: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNN 290 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNN Sbjct: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNG 290 >UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B n=177 Tax=Gammaproteobacteria RepID=RLUB_HAEIN Length = 357 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 204/277 (73%), Positives = 240/277 (86%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 EKLQKVLARAG GSRREIE++I AGRVSV+GKIA LGDR++V G+K+RIDG +I++ + Sbjct: 76 EKLQKVLARAGQGSRREIETMIAAGRVSVEGKIATLGDRIDVHSGVKVRIDGQIINLSHT 135 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 ++ICRVL YYKPEGELCTR+DPEGR TVFDRLP+L G+RWIAVGRLD+NT GLLLFTTD Sbjct: 136 QKEICRVLMYYKPEGELCTRSDPEGRATVFDRLPRLTGSRWIAVGRLDINTSGLLLFTTD 195 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRLMHPSREVEREY+VRVFGQVDDA L L +GVQLEDG A FK IKF+GG GINQ Sbjct: 196 GELANRLMHPSREVEREYSVRVFGQVDDAMLARLRKGVQLEDGLANFKEIKFTGGVGINQ 255 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 WY+VTL EGRNREVRRLWE+ G+QVSRLIR+RYG+I L KGLPRGGW E+DL NYLRE Sbjct: 256 WYDVTLMEGRNREVRRLWESQGIQVSRLIRIRYGNIKLMKGLPRGGWEEMDLENVNYLRE 315 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVS 279 LV LP ET +K+ V++ RR K+ QIR+AVKR+S+++ Sbjct: 316 LVGLPAETETKLDVKQASRRPKSGQIRKAVKRYSEMN 352 >UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadales RepID=B3E7C4_GEOLS Length = 274 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 101/279 (36%), Positives = 150/279 (53%), Gaps = 9/279 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M E+LQK+++ AG SRR E +I AGRV+V+G++ I +DG + Sbjct: 1 MIERLQKIISAAGITSRRAAEEMILAGRVTVNGQVVTELGSKADPAKDLIALDGQPV--- 57 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + +KP G + + DP+GR V + + + G R VGRLD N+ GLLL T Sbjct: 58 -KPAETFYYVLLHKPAGYVTSLKDPQGRQLVTELVKDV-GERLFPVGRLDYNSEGLLLLT 115 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG ANRLMHP +V++EY VRV G++D +++ L+ GV+LEDGP T++ + Sbjct: 116 NDGAWANRLMHPRHQVDKEYHVRVRGKIDPQQIKKLADGVELEDGPTGATTVRLLKNDQS 175 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N W +VT+ EGRNR+VRR+ AVG+ V RL R+RYG++ L GL G + L + L Sbjct: 176 NDWLSVTIREGRNRQVRRMCAAVGLFVVRLRRIRYGNLTLG-GLQPGEYRLLSREEAQAL 234 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVS 279 PP + + + Q + KR + Sbjct: 235 DAP---PPVKQREQRMAAPVKSSTTPQSQTPGKRPPRRK 270 >UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICF2_9CLOT Length = 235 Score = 299 bits (766), Expect = 9e-80, Method: Composition-based stats. Identities = 82/240 (34%), Positives = 123/240 (51%), Gaps = 7/240 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +LQK LA AG SRR+ E +I+ GRV+V+ I + VT + +DG ++ Sbjct: 3 EIRLQKYLAHAGVASRRKAEEMIKQGRVAVNNVIIEN-MGATVTCNDVVTVDGKPVTT-- 59 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 E+ + KP G + T D GRP V D + G R VGRLD +T GL+L T Sbjct: 60 --EEAKVYIMLNKPVGYVSTSKDQFGRPAVIDLVKDA-GKRLYPVGRLDYDTSGLILLTN 116 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+ RL HP EV + Y + G D ++ G++++D + + +GIN Sbjct: 117 DGDFTYRLTHPKHEVNKVYEAVISGFPDKNEITRFETGLKIDDYQTSPAEFEVLNKKGIN 176 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +T+ EG+NR+VR++ EA+G +V L R++ G I L + LP G W L + L Sbjct: 177 TLVRITIHEGKNRQVRKMCEAIGHKVLTLKRIQIGPIAL-ENLPEGKWRHLSDNEVKILY 235 >UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=A4J3M3_DESRM Length = 309 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 90/288 (31%), Positives = 136/288 (47%), Gaps = 6/288 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M E+LQK+LA+AG SRR E +I +G+V V+GK KI + G + Sbjct: 1 MEERLQKILAKAGVASRRHSEELIISGQVKVNGKTVTEMGLKVDPTKDKIEVKGKPLPPL 60 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E L KP G + T +D R TV D L + R VGRLD ++ GLLL T Sbjct: 61 EKK----VYLLMNKPRGYVTTLSDERDRKTVVDLLKGVE-QRVYPVGRLDYDSEGLLLLT 115 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGEL L HP +V++ Y +V G + +L+ +++G+ LEDGP A ++ +G Sbjct: 116 NDGELTQALTHPKHKVKKTYLAKVDGIPETEELKAMAKGLVLEDGPTAPADVRLAGTGDN 175 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +++ EGRNR+VRR+ E +G +V RL R R G + L L G L + L Sbjct: 176 RALLEISIHEGRNRQVRRMCEHIGYKVLRLRRTRIGTLELGS-LKSGEVRALTKKELREL 234 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRN 288 LV L + + +++ + R + ++ Sbjct: 235 ASLVGLKQNYNDMQLTTEVQKKKPSPCGRVGRIKGKVSEQKSNRSAKS 282 >UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter RepID=D0SB72_ACIJO Length = 368 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 154/284 (54%), Positives = 199/284 (70%), Gaps = 2/284 (0%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSEKLQKVLAR G GSRR +E +I AGRVSV+G++A++G+R+E PG ++RIDG +S + Sbjct: 1 MSEKLQKVLARVGLGSRRYMEEVIAAGRVSVNGQVAQVGERIE--PGDELRIDGRKVSFQ 58 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E RVL YYKPEGE+C+RNDPE RPTVFD+LP + RW+ VGRLD+N+ GLLLFT Sbjct: 59 IEDEIRRRVLIYYKPEGEICSRNDPESRPTVFDQLPAIANDRWVMVGRLDINSTGLLLFT 118 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELANRLMHPS EVEREYAVRV G+V ++ +GV L+DGPA F++ GGEGI Sbjct: 119 NDGELANRLMHPSNEVEREYAVRVMGEVTPQIKNNMLKGVVLDDGPAKFESFSEIGGEGI 178 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+WY V + EGRNREVRR++E+ G++VSRL+R RYG + LP+ L G W ELD + L Sbjct: 179 NRWYQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMELDKNDIDNL 238 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRS 284 + VEL P + + RR + + A +R + RR Sbjct: 239 TKAVELKPRQGTGLYGMAKRRTERMQEKPMAARRGGFLRQQRRD 282 >UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B0TFD8_HELMI Length = 333 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 101/287 (35%), Positives = 144/287 (50%), Gaps = 12/287 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + +LQK+LA G SRRE E++I AGRV ++G + + I +DG ++ Sbjct: 5 TVRLQKLLAAHGVASRREAEAMIRAGRVRINGTVVREQGVRVDGARDVIEVDGRIL---- 60 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + A YKP G + T DP+GR TV L + R VGRLD +T GLLL T Sbjct: 61 KRREAPLYYALYKPRGVVTTCKDPQGRQTVIGLLSGV-NERVYPVGRLDRDTEGLLLLTN 119 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+LA RL HP VE+ Y R+ G V L+ L+ GVQLEDG A ++ EG Sbjct: 120 DGQLAFRLTHPRFGVEKTYRARLRGDVSAGALKALAEGVQLEDGVTAPAQVRLLRREGDA 179 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W + + EGR R++RR+ +A+G V L R+ +G I L K L G L A+ L+ Sbjct: 180 TWIEIKIHEGRKRQIRRMGDAIGHPVIDLERIAFGPITLGK-LKPGEVRPLTSAELRALK 238 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRN 288 + T+ +D RR A R A ++V+ + G+ Sbjct: 239 SAAGMKEATAHG----RDERRQTARPSRTAAT--AKVASAHKDAGKG 279 >UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacteria RepID=B2HUK5_ACIBC Length = 307 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 154/291 (52%), Positives = 200/291 (68%), Gaps = 2/291 (0%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSEKLQKVLAR G GSRR +E +I AGRVSV+G+IA++G+R+E PG ++RIDG + + Sbjct: 1 MSEKLQKVLARIGLGSRRYMEEVIAAGRVSVNGRIAQVGERIE--PGDELRIDGRKVQFQ 58 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E RVL YYKPEGE+C+RNDPE RPTVFD LP++ RW+ VGRLD+N+ GLLLFT Sbjct: 59 IEDEIRRRVLIYYKPEGEICSRNDPEKRPTVFDHLPQIANDRWVMVGRLDINSTGLLLFT 118 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELANRLMHPS E+EREYAVRV G+V +++ GV+LEDGPA F++ GGEGI Sbjct: 119 NDGELANRLMHPSNEIEREYAVRVMGEVTPQLRQNMVNGVELEDGPAKFESFSEIGGEGI 178 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+WY V + EGRNREVRR++E+ G++VSRL+R RYG + LP+ L G W ELD + L Sbjct: 179 NRWYQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMELDKTDIDNL 238 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 + VEL P + + RR + + A +R + RR + Sbjct: 239 AKSVELKPRQGTGLFGMAKRRTERMTEKPMAARRGGYLRQQRRDDEKEAPA 289 >UniRef50_Q87NB7 Ribosomal large subunit pseudouridine synthase B n=17 Tax=Bacteria RepID=RLUB_VIBPA Length = 312 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 191/304 (62%), Positives = 231/304 (75%), Gaps = 14/304 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSEKLQKVLARAGHGSRREIES+I++GRVSV+G +AKLG+R+E +RIDGH++S + Sbjct: 1 MSEKLQKVLARAGHGSRREIESLIKSGRVSVNGVVAKLGERLE-DESSVVRIDGHIVSAK 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E ICRVLAYYKPEGELCTR+DPEGR TVFDRLPK+RG+RWI+VGRLD NT GLLLFT Sbjct: 60 VQEEVICRVLAYYKPEGELCTRHDPEGRRTVFDRLPKIRGSRWISVGRLDANTSGLLLFT 119 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDGELANRLMHPSR+VEREY VRVFG+V + K+R+L +GV+LEDG A F+ + ++GGEG+ Sbjct: 120 TDGELANRLMHPSRQVEREYLVRVFGEVTEQKVRNLVKGVELEDGLARFEDVVYAGGEGM 179 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N + V + EGRNREVRRLWE+ VSRL RVRYGDI L K LPRGGW ELDL + NYL Sbjct: 180 NHTFYVVINEGRNREVRRLWESQECTVSRLKRVRYGDIFLDKKLPRGGWMELDLKEVNYL 239 Query: 241 RELVELPPETSSKVA-----VEKDRRRMKANQIRRAVKRH--------SQVSGGRRSGGR 287 RELVEL PE + + + R R ++ +IRRAVKRH + + R + Sbjct: 240 RELVELRPEKETMLDLSKDNTSRKRERARSQKIRRAVKRHEERVSTSKGRSNNPARRKPK 299 Query: 288 NNNG 291 N G Sbjct: 300 KNAG 303 >UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3U4L2_9BACT Length = 420 Score = 290 bits (742), Expect = 5e-77, Method: Composition-based stats. Identities = 98/290 (33%), Positives = 144/290 (49%), Gaps = 6/290 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M +LQK++A G SRR+ E +I +GRV+++G + K +++DG + Sbjct: 1 MDVRLQKLIAGTGLASRRKAEELITSGRVTINGSVVKELGTKVDPARDHVKVDGKHLR-- 58 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 A Q L KP+ + T +DPEGRPTV D L R VGRLD ++ GL+L T Sbjct: 59 --AAQPYVYLILNKPKNVMSTLDDPEGRPTVKDLL-HGVTVRVFPVGRLDFDSEGLMLLT 115 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 G+LA L+HP V + Y ++V G +DDAK+ L RGV+LEDG A +K Sbjct: 116 NHGDLAQALLHPRYHVPKTYLIKVKGVLDDAKIEALERGVKLEDGFTAPAKVKKVSRAES 175 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N W VT+ EGR +V+R+ EAVG V +L+RVR G + L L + L + N L Sbjct: 176 NSWLEVTIHEGRKHQVKRMVEAVGHSVIKLVRVRMGPLLLG-DLAPREYRFLTDREANRL 234 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNN 290 RELVE + + ++ + + G ++ Sbjct: 235 RELVEDRVARAERPELDASGKPTRWMPPTEPAPPRPPKPERSGRGPKSQR 284 >UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B n=67 Tax=Gammaproteobacteria RepID=RLUB_PSEAE Length = 386 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 155/291 (53%), Positives = 195/291 (67%), Gaps = 4/291 (1%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 EKLQKVLAR G GSRR++E I GRV+V+G +A LG RV+ I +DGHLI E+ Sbjct: 14 EKLQKVLARLGVGSRRDVEVWIAEGRVNVNGSVASLGQRVD--SHDAITVDGHLIRREEA 71 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 AE + RVL Y KPEGE+CTR+DPEGRPT+FDRLP+LR RWI VGRLD+NT GLLLFTTD Sbjct: 72 AESVRRVLIYNKPEGEVCTRDDPEGRPTIFDRLPRLRTGRWINVGRLDINTTGLLLFTTD 131 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFS-GGEGIN 181 GELANRLMHPS E++REYAVRV G+V + + L GV LEDGPA F I+ + GGEG N Sbjct: 132 GELANRLMHPSYEMDREYAVRVRGEVTEEMIERLLNGVMLEDGPAKFSDIQQAPGGEGFN 191 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 WY+ + EGRNREVRRLWE+ G+ VSRL RVR+G + L L G + E+D + + L Sbjct: 192 HWYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLTSELTMGRYREMDQREIDILS 251 Query: 242 ELVELPPETSSK-VAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 E V L P +++ + + R + R + GR+ R +G Sbjct: 252 EEVGLKPVALPGMTTKAREKAERQQRKQARPLARSERPEAGRKRAPRREDG 302 >UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria RepID=Q12AB3_POLSJ Length = 544 Score = 286 bits (732), Expect = 7e-76, Method: Composition-based stats. Identities = 136/293 (46%), Positives = 181/293 (61%), Gaps = 8/293 (2%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 KL KVLA+AG GSR E+E +I GR+SV+ + A +G R++ G ++++G I VR Sbjct: 98 KLHKVLAQAGLGSRLEMEQLILEGRISVNAEPAHIGQRIQF--GDTVKVNGKPIRVRIDP 155 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 RV+AY+KP GE+ T +DP+ RPTVF RLPKL +W +VGRLD+NT GLLL T+ G Sbjct: 156 P-PPRVIAYHKPSGEVVTHDDPQNRPTVFRRLPKLFQGKWQSVGRLDLNTEGLLLLTSSG 214 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 ELAN+LMHP +EREYAVRV G + + + + L GV L+DG A F +I+ GGEG N W Sbjct: 215 ELANKLMHPRFGLEREYAVRVLGALSNEEKKRLLEGVTLDDGVAQFSSIEAGGGEGANCW 274 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 Y VT++EGRNREVRR++EAVG VSRLIR+RYG + LP+GL RG + ELD L Sbjct: 275 YRVTISEGRNREVRRMFEAVGHAVSRLIRIRYGAMLLPRGLKRGAFVELDERDIWALTNA 334 Query: 244 V-----ELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 V P + K + R +R+ + G R +G Sbjct: 335 VTRSESRADPRGAPKHPGHVRGDEGGEFRPGRGPRRNERSRGDRGRLPAPESG 387 >UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q24V73_DESHY Length = 257 Score = 286 bits (732), Expect = 7e-76, Method: Composition-based stats. Identities = 101/247 (40%), Positives = 145/247 (58%), Gaps = 7/247 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQKVLA+AG SRR E II GRV V+G++ + +V +I +DG L+S+ Sbjct: 15 EERLQKVLAQAGIASRRHAEEIILQGRVKVNGEVIRT-LGTKVVSTDRIVVDGRLLSI-- 71 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + +KP G + + DP+GR TV + +PK+ R VGRLD +T GLLL T Sbjct: 72 -PQNDYAYYLLHKPTGYITSVTDPQGRKTVMELMPKI-PRRVYPVGRLDYDTSGLLLLTN 129 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+LA+RLMHPS VE+ Y V V ++ + L+ L +GV LEDG A I+ +G Sbjct: 130 DGDLAHRLMHPSYGVEKTYRVEVGEKIPEQALKRLEKGVLLEDGKTAPARIREVSPKGRG 189 Query: 182 QW--YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 Y +T+ EGRNR+VRR+++AVG +S L R+R+G + L L G + L + + Sbjct: 190 SLPTYEITIHEGRNRQVRRMFKAVGFPLSTLKRLRFGPLELDPSLAPGAFRTLSKTEIQH 249 Query: 240 LRELVEL 246 LR V+L Sbjct: 250 LRRAVKL 256 >UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNA2_CRYCD Length = 296 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 89/244 (36%), Positives = 128/244 (52%), Gaps = 7/244 (2%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRES 62 +LQK LARAG SRR E +I AGRV+V+G + LG +V+ ++ +DG +++ Sbjct: 51 RLQKFLARAGVASRRGSERLISAGRVAVNGIVITELGTKVDPL-VDEVCVDGAIVTWGAP 109 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 A LA KP G + T D GR V D +P + +GRLD +T GLLLF+TD Sbjct: 110 A----VTLALNKPAGIITTMKDLRGRRCVADIMPTEQYPGLFPIGRLDQDTTGLLLFSTD 165 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G L N L+HPS V + Y + G + A L L+ G+ L+DG A + + Sbjct: 166 GNLGNALLHPSHGVSKVYRATIEGSIGQAALEQLASGILLDDGMTAPARVSVVQAGKKHS 225 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + L EGR +V+R+ +AVG V +L R +G I L GL G + L+ A+ + L Sbjct: 226 VIELELHEGRKHQVKRMCQAVGHPVVKLHRASFGPIDLA-GLATGAYRRLEGAELSVLYN 284 Query: 243 LVEL 246 L Sbjct: 285 AAGL 288 >UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=C8WXC0_ALIAD Length = 273 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 111/286 (38%), Positives = 147/286 (51%), Gaps = 17/286 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKVLA AG SRR+ E +I AGRVSVDG+I +I +DG I + + Sbjct: 2 ERLQKVLAHAGVASRRKCEELILAGRVSVDGEIVTQLGAKVDPSRQRIAVDGVPIELEQ- 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 VL KP L T +DP GR TV LP +R R VGRLD +T GLLLFT D Sbjct: 61 ----PVVLVLNKPVAYLSTVSDPLGRRTVMQLLPPIR-ERVYPVGRLDYDTSGLLLFTND 115 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSG---GEG 179 GEL RL+HPSRE+E+ Y V V G VD R L GV+LEDG A ++ E Sbjct: 116 GELTQRLLHPSREIEKVYRVSVRGIVDRETRRALMEGVELEDGVTAPAKVEVLRQADRED 175 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 ++ + EGRNR+VRR++E +G+ V RL R+ +G + L L G W L + Sbjct: 176 GVAVVHLAIHEGRNRQVRRMFERLGLPVLRLKRIAFGPVSLGH-LKTGEWRALTQEEWVA 234 Query: 240 LRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSG 285 L + + P + + ++ R+ R S G R G Sbjct: 235 LYQAAGMTPPPYRRPTISRE-------PARKGAARASARDHGSRRG 273 >UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=A4SY81_POLSQ Length = 587 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 136/287 (47%), Positives = 172/287 (59%), Gaps = 3/287 (1%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA G GSRR++E +I GRVSV+G A +G R+ P ++RI+G + R+ Sbjct: 196 TVKLHKVLADVGMGSRRDMEDLIIQGRVSVNGLPAHIGQRI--GPTDQVRINGKPVH-RK 252 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + RV+ Y+KP GE+ +++DPEGRPTVFDRLPK R RWIAVGRLD NT GLLLFTT Sbjct: 253 IQTKPPRVIMYHKPAGEIVSQSDPEGRPTVFDRLPKPRQGRWIAVGRLDFNTEGLLLFTT 312 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 GELANRLMHP VEREYAVR+ G + L G+ L+DG A F + GGEG N Sbjct: 313 SGELANRLMHPRYGVEREYAVRILGDLSQENTALLKSGITLDDGQAKFLRLAMGGGEGAN 372 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +WY+V L+EGRNREVRR++EAVG VSRLIR RYG LP L RG W E++ L Sbjct: 373 RWYHVALSEGRNREVRRMFEAVGHTVSRLIRTRYGIFLLPPRLRRGKWEEIEAGGIYNLM 432 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRN 288 + L S + + + G R+ Sbjct: 433 KSAGLKMPQPSDKGRSPNPNNRDRRPAGEDFQPDPMQTSVSYWGSRD 479 >UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY92_THERP Length = 282 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 102/283 (36%), Positives = 141/283 (49%), Gaps = 8/283 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 ++LQ+VLA G SRR+ E +I AGRV+VDG + + R +I +DG + Sbjct: 7 EQRLQRVLAAHGVASRRKAEELILAGRVTVDGVVVRELGRKVDPERQEICVDGKPLH--- 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + R + +KP G + T D GR TV D + R + VGRLD ++ GLLL T Sbjct: 64 --SEPRRYIVLHKPVGYITTTADEYGRKTVLDLV--QVPERVVPVGRLDRDSSGLLLLTN 119 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+L R+ HP E+E+EY V V G L RGV ++ P + ++ E Sbjct: 120 DGDLIYRITHPRYELEKEYEVLVDGFPPPEVEEALRRGVPVDGRPVRIRRLEAIRVEPQG 179 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 Y V + EGRNR +RR++E VG V RL RVR G + L LP G W +L ++ LR Sbjct: 180 TVYRVVIHEGRNRIIRRVFERVGYPVLRLQRVRVGPLRLG-DLPPGRWRDLTASEVAALR 238 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRS 284 V LP V E+ R + RR +R S V R Sbjct: 239 RAVGLPEFPEGAVGRERKARGGRGMPARRGDRRPSGVRKEHRR 281 >UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JIZ1_9ALTE Length = 367 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 155/291 (53%), Positives = 195/291 (67%), Gaps = 7/291 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++QK+LARAG GSRREIE ++AGR+ V+GK G + V+ +DG + V + Sbjct: 57 ERIQKLLARAGVGSRREIEGWMDAGRLLVNGKPVTPGQKATVS--DVFELDGKRLEVAAA 114 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 AE + RVL Y KPEGE+ TR DPEGRPTVFDRLP+LR RWI++GRLD+NT GL++FTTD Sbjct: 115 AEVLRRVLIYNKPEGEVTTRKDPEGRPTVFDRLPRLREHRWISIGRLDLNTTGLVMFTTD 174 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRLMHPS E++REYAVR+FG+VDDA + L GV LEDG A F I +GG G+N+ Sbjct: 175 GELANRLMHPSSEIDREYAVRIFGEVDDAMIERLRTGVTLEDGEAKFSDISAAGGTGMNR 234 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W++VTL EGRNREVRRLWE+ GV+VSRL RVRYG I LP L G W ELD + L Sbjct: 235 WFHVTLLEGRNREVRRLWESQGVRVSRLKRVRYGSIFLPSRLTVGKWEELDQKAVDLLSR 294 Query: 243 LVEL-----PPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRN 288 V L P +T + A + ++R A R+ + S G R Sbjct: 295 TVGLAKMAVPQQTPDEAAAQARQQRKAAPVTNRSNRAASSPGSKSGQGARK 345 >UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=C4ZJR2_THASP Length = 379 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 144/267 (53%), Positives = 196/267 (73%), Gaps = 6/267 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKVLA+AG SRREIE + AGR+SV+G A LG ++ PG +++++G L+ +R Sbjct: 117 ERLQKVLAQAGVASRREIEEWVVAGRISVNGLPASLGQKI--GPGDRVKVNGKLVPLRF- 173 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 ++ RVL Y+KPEGE+ +R+DPEGRPTVF+RLP LR RW+AVGRLD NT GLLLFT D Sbjct: 174 TQRSPRVLIYHKPEGEIVSRDDPEGRPTVFERLPILRKGRWLAVGRLDFNTSGLLLFTND 233 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LAN+LMHP E+EREYAVR+ G++ + +++ L+ G+QLEDGPA F ++ GGEG N Sbjct: 234 GDLANKLMHPRYELEREYAVRILGELTEEQVKSLTDGIQLEDGPAKFNLLRDEGGEGANH 293 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 WY VT++EGRNREVRR++EAVG+ VSRL+RVRYG + LP L RG W E+ A+ L Sbjct: 294 WYRVTISEGRNREVRRMFEAVGLTVSRLMRVRYGSVELPARLKRGMWMEMPEAEACAL-- 351 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIR 269 LPP S+ +D+R +K ++ + Sbjct: 352 -AGLPPPQQSRQQDLRDKRPVKLHRTQ 377 >UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8G2X0_CHLAD Length = 567 Score = 280 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 95/282 (33%), Positives = 137/282 (48%), Gaps = 7/282 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKVLA AG SRR+ E +I AGRV+V+G++ + ++ +DG + + Sbjct: 4 ERLQKVLASAGIASRRDCEELIAAGRVTVNGRVVTVPGTRVDLEHDEVLVDGQPLRMPAK 63 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + +KP G + T DP GRPTV D + AR VGRLD+++ GL+L T D Sbjct: 64 RT----YIMLHKPAGVVSTAEDPHGRPTVVDLVD--VPARVFPVGRLDLDSEGLILLTDD 117 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA L HPS EVE+EY V + + LR GV LE A ++ Sbjct: 118 GELAYALTHPSFEVEKEYRVLLDRALTPDALRSWRNGVLLEGEMTAPAWVELLETTPEGV 177 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W + L EGR R++R + + +G +V RL+RVR G + L LP W L + LR Sbjct: 178 WVRIVLREGRKRQIRAVAKLLGYEVRRLVRVREGPLQLG-DLPPRAWRHLTDEEVAALRA 236 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRS 284 V + + D + +A + S +RS Sbjct: 237 HVSVRRSLADVPTRSTDVVKSRALDEKPHRAGDSAPVTRQRS 278 >UniRef50_B6EJI1 Pseudouridine synthase n=8 Tax=Gammaproteobacteria RepID=B6EJI1_ALISL Length = 354 Score = 280 bits (717), Expect = 4e-74, Method: Composition-based stats. Identities = 184/294 (62%), Positives = 233/294 (79%), Gaps = 4/294 (1%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSEKLQKVLARAG GSRRE+E++I+AGRVS+DG+ AKLGDR+E +IRIDGH++SV+ Sbjct: 1 MSEKLQKVLARAGLGSRRELETMIQAGRVSIDGQKAKLGDRLE-NVDARIRIDGHVVSVK 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 ES + ICRVLAY+KPEGELCTR+DPEGR TVFDRLPK++ +RW++VGRLD NT GLLLFT Sbjct: 60 ESTDVICRVLAYHKPEGELCTRHDPEGRRTVFDRLPKIKDSRWVSVGRLDANTAGLLLFT 119 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDGELANRLMHPSR+VEREY R+FG ++D +++L GV+LEDG A F+ + ++GGEG+ Sbjct: 120 TDGELANRLMHPSRKVEREYMCRIFGDINDKMVKNLVTGVKLEDGEARFEDVMYAGGEGM 179 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N + V + EGRNREVRRLW++ GV VSRL RVRYGDI L K LPRGGW EL+L + NYL Sbjct: 180 NHTFYVVINEGRNREVRRLWDSQGVTVSRLKRVRYGDIFLEKALPRGGWMELELKEVNYL 239 Query: 241 RELVELPPETSSKVAVE---KDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 R++VELP E S + V+ + R + K+ +IRRAVKRH + + R+ G Sbjct: 240 RDMVELPHEKESLLDVDKESRKRAKSKSQKIRRAVKRHDERTTEDRNTAGGRRG 293 >UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C0FY58_9FIRM Length = 261 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 8/240 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L G G+R E++ I++ +++V+G+I + +I G ++ E Sbjct: 25 MRLDKFLTEMGLGTRSEVKKILKTKQITVNGEIVTKPETKVAPENDQISYKGEPVTYCE- 83 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 +YKP G + D + TV D L + VGRLD++T GLLL T D Sbjct: 84 ----YEYYLFYKPAGCVTATED-QLHKTVMDYLTDTVRSDLFPVGRLDIDTEGLLLITND 138 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL-EDGPAAFKTIKFSGGEGIN 181 G LA+ L+ P++ VE+ Y + G V + + GV + E+ ++ E Sbjct: 139 GALAHDLLSPAKHVEKTYYAVIDGVVTEKDVNSFENGVDIGEEKLTKPGKLRILKSEP-E 197 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +T+TEGR +V+R++EAVG +V L R+ G + L L G + L + L+ Sbjct: 198 SEIELTITEGRFHQVKRMFEAVGKKVLYLKRISMGPLQLTDDLKPGEYRPLTEEEITALK 257 >UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2S0_9FIRM Length = 290 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 93/288 (32%), Positives = 136/288 (47%), Gaps = 9/288 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M E+LQK+++ AG SRR E++I AGRV+VDG +I +DG I Sbjct: 1 MEERLQKIISNAGAASRRAAEALIRAGRVTVDGLPVTALGGKYDAARHEIAVDGTPIR-- 58 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + +KP G L T D GR TV D LP AR VGRLD +T GLL+ T Sbjct: 59 --RNERRFYILLHKPRGCLSTAYDDRGRRTVLDLLPH-FPARLYPVGRLDADTEGLLIIT 115 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG + L+HP E+++ Y V G V + L L G+ L+DG A ++ EG Sbjct: 116 NDGAMTQGLLHPRFEIDKVYRAEVTGNVTEDGLTALRNGILLDDGRTAPARLRVLHREGE 175 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + EGR R+VRR++ A+G +V RL RVR+ + L G+ G + L + + L Sbjct: 176 RTVVETIIHEGRKRQVRRMFAAIGCRVQRLCRVRFAMLTLD-GVSCGSFRHLTSDEIHEL 234 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRN 288 +++ + S + R + R Q R+ R Sbjct: 235 KKIAGV---MHSGEDSRRRRGSCGNDGGRCGSGTRGQCDPARKDAARR 279 >UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693918 Length = 249 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 99/257 (38%), Positives = 138/257 (53%), Gaps = 11/257 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISV 59 M E+LQKVLA AG SRR+ E II AGRV V+ K+ LG +V I++DG I Sbjct: 1 MEERLQKVLAAAGVASRRKCEEIILAGRVEVNDKVVSTLGVKVNPHQ-DVIKVDGRAIQN 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 +E + + KP+G + + +DPEGR V D L + R VGRLD +T GLL+ Sbjct: 60 QEKI-----YILFNKPKGVITSVSDPEGRRVVGDFLKGI-KERVYPVGRLDYDTEGLLIL 113 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF--SGG 177 T DGE AN + HP V + Y V G + L L GV+LEDG A +++ Sbjct: 114 TNDGEFANMVTHPRHHVSKTYHATVKGVPHGSVLEKLREGVKLEDGMTAPAEVEYHDIDP 173 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 + ++T+ EG+NR+VRR++EAVG V+RL RV++G IPL GLPRG + + + Sbjct: 174 DKKQSVISITIYEGKNRQVRRMFEAVGYPVTRLKRVKFGSIPLV-GLPRGKFRRMRKEEV 232 Query: 238 NYLRELVELPPETSSKV 254 L + Sbjct: 233 QALLNEASQSHKVQKGQ 249 >UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2V6W2_SULSY Length = 244 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 71/248 (28%), Positives = 119/248 (47%), Gaps = 10/248 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ G GSR +++ +I+ G V V+ +I K K+ ++ I +E+ Sbjct: 1 MRLDKFLSNQGFGSRSQVQKLIKKGFVKVNDEIVKDPSYHIDPMKDKVELEDEEILYKEN 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLR-GARWIAVGRLDVNTCGLLLFTT 121 KP G + D E PTV D L ++ VGRLD++T GLL+ TT Sbjct: 61 -----HYFMLNKPAGYITATEDEEY-PTVLDLFSDLPIASKLFPVGRLDIDTEGLLILTT 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDD-AKLRDLSRGVQLEDGP--AAFKTIKFSGGE 178 DG+ +RL HP +E+EY V G + + ++G+ L+ +K Sbjct: 115 DGQFGHRLSHPKWNIEKEYYAIVEGDISNIDFSESENKGIYLKKEKYQTKPFKVKVLNTS 174 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 +TLTEG+ V+R+ + +G V L R+R G++ L + L G + EL + Sbjct: 175 KDKSEILITLTEGKYHIVKRIMQELGYPVLYLKRIRIGNLKLDEDLLPGEFRELTEKEIK 234 Query: 239 YLRELVEL 246 L++L+++ Sbjct: 235 DLKKLIKM 242 >UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_1464 n=4 Tax=Bacteria RepID=Y1464_AQUAE Length = 249 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 86/255 (33%), Positives = 126/255 (49%), Gaps = 8/255 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M ++ K L+ AG SRR+ E +I GRV V+G++ + + +DG + + Sbjct: 2 MEVRINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLGVKVNPEVDIVEVDGKPVKPQ 61 Query: 61 ESAEQICRVLAYYKPEGELCTR-NDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 R + KP L P+GR T+ + + + R VGRLD NT GLL+ Sbjct: 62 RK-----RYIILNKPCCYLTQLGRSPDGRKTIEELIKDI-PERVFPVGRLDYNTEGLLIL 115 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DGELANR++HP ++ + Y V G+VD L+ + +G++LEDG A I+ EG Sbjct: 116 TNDGELANRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIELEDGFAKPDNIRIVRYEG 175 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 N +T EGR V+R A G +V RL R+ G I L K L G W EL+ + Sbjct: 176 KNTLLEITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIKLGK-LSPGKWRELNQGELAQ 234 Query: 240 LRELVELPPETSSKV 254 L + V L + Sbjct: 235 LFKAVGLKYVPRKRR 249 >UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJH7_THEYD Length = 237 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 88/242 (36%), Positives = 134/242 (55%), Gaps = 7/242 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M E+LQK+L+ G SRR E +I+ GRV+V+G+IA +G + + I++DG L+ Sbjct: 1 MLERLQKILSDYGIASRRHAEELIKEGRVTVNGQIAVIGQKADP-EKDYIKVDGKLL--- 56 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + A+YKP + DP+GRPT+ D + ++ R VGRLD ++ GLLL T Sbjct: 57 -IKPEPKVYYAFYKPRKVITALLDPQGRPTIRDFIKGIKF-RIYPVGRLDFDSEGLLLLT 114 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELA ++MHPS ++E+ Y V+V G V+ + L +G+++E A ++ Sbjct: 115 NDGELAYKVMHPSSQIEKTYMVKVDGIVEPETIEKLRKGIKIEGKLAVPVSVHLVKKLKA 174 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N W +TL EGR R++R++ E VG V RLIR+ + L L G L + L Sbjct: 175 NSWIKITLHEGRKRQIRKMLERVGHPVIRLIRIAIDGVKLG-DLKPGQLRPLTKEEIEKL 233 Query: 241 RE 242 R Sbjct: 234 RR 235 >UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7I2_9ACTN Length = 285 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 79/264 (29%), Positives = 124/264 (46%), Gaps = 23/264 (8%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 + +LQ+ LARAG SRR E +I AGRV V+GK ++ + + +DG Sbjct: 23 FTMRLQRFLARAGVASRRGSEKLISAGRVCVNGKQVRVLGTKVMPQYDHVTVDGK----E 78 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 L KP L T +DP G P V +P VGRLD +T G+LLFT Sbjct: 79 YVLGNDHVYLLLNKPSQVLTTMSDPFGFPCVASLVPCDDYPGLFPVGRLDSDTTGVLLFT 138 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 T+G + NRL+HPS V + Y + G++ ++++ LS+G+ LEDG + I+ + Sbjct: 139 TNGNMGNRLLHPSHHVWKTYVALIEGKLTSSQMQKLSQGIMLEDGMTSPCFIRTITQDEP 198 Query: 181 NQWY-------------------NVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLP 221 + + EGRN +V+R+ + +G V +L R ++G + L Sbjct: 199 CTHLDKNHSLFDDMRLNAASSLCELKIHEGRNHQVKRMLQEIGHPVIKLHRFQFGPLCLN 258 Query: 222 KGLPRGGWTELDLAQTNYLRELVE 245 +P G W + + L + E Sbjct: 259 AQIPLGSWRMCTQQEIHDLETVCE 282 >UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SYF2_9FIRM Length = 239 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 69/245 (28%), Positives = 113/245 (46%), Gaps = 9/245 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L GSR +++ I+ G VSV+G A D I+ +G + Sbjct: 1 MRLDKFLVEMNIGSRSQVKQYIKKGMVSVNGTNAASSDMKINEDTDTIKYNGKQLCY--- 57 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R KP G + D TV D L VGRLD++T GLL+ T D Sbjct: 58 --SKYRYFLLNKPAGCVSATKD-NVHQTVIDLLNGENTKDLFPVGRLDLDTEGLLIITND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL-EDGPAAFKTIKFSGGEGIN 181 G LA+ L+ P+ + + Y + G VDD + +G+ + +D P ++K + Sbjct: 115 GRLAHHLLSPAHHIAKTYYADIDGYVDDQTISLFKQGIDIGDDTPTLPASLKIIEADRST 174 Query: 182 --QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +T+TEGR +V+R+++AV + V+ L R+ G++ + LP G + EL + + Sbjct: 175 GSSRIELTITEGRFHQVKRMFQAVNMSVTFLKRISMGNLHIADDLPTGSYRELTPEEVSA 234 Query: 240 LRELV 244 L + Sbjct: 235 LSHTI 239 >UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFA0_THET1 Length = 253 Score = 277 bits (709), Expect = 3e-73, Method: Composition-based stats. Identities = 97/257 (37%), Positives = 132/257 (51%), Gaps = 8/257 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K+LA+ G SRR E +I GRVSV+G+I + +P +IR+DG L+ + Sbjct: 5 IRLHKLLAQMGVASRRAAERMIAEGRVSVNGRIVNTPGAM-ASPEDEIRVDGKLVRQQPK 63 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R + KP G L T D GR TV D L + R VGRLD ++ GL+L T D Sbjct: 64 M----RYILLNKPAGVLSTAKDERGRKTVIDLLGQ--SNRVYPVGRLDKDSEGLMLLTND 117 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA R+ HP V ++Y V V G D L+DL +GV+LEDG + K Sbjct: 118 GELAQRITHPRYGVHKQYMVEVEGYFSDRSLQDLLQGVELEDGFSKPLDAKIISRSRDKS 177 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 +T+ EGR R+VRR A+G +V RL RV G + L L G + EL + +LR Sbjct: 178 KLLITMGEGRKRQVRRTLAALGYKVKRLTRVALGPLSLG-NLKPGEYRELSDQEAKWLRS 236 Query: 243 LVELPPETSSKVAVEKD 259 + L PE S+ Sbjct: 237 QLGLTPEISNIQQNHGR 253 >UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C7M7R0_CAPOD Length = 387 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 88/243 (36%), Positives = 127/243 (52%), Gaps = 10/243 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKI-AKLGDRVEVTPGLKIRIDGHLISVR 60 +L K +A AG SRR + I AG V+V+G++ LG RV+ P ++R DG L+S Sbjct: 153 EVRLNKYIADAGICSRRNADMYISAGNVTVNGEVMTTLGYRVK--PTDEVRFDGKLLSSE 210 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + KP+G + T ND +GR TV D + R + VGRLD T GLLL T Sbjct: 211 KKE-----YILLNKPKGFITTTNDEKGRKTVMDLVANATNVRILPVGRLDRATTGLLLLT 265 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGEL +L HP+ V + Y V + ++D + G++LEDG I + + Sbjct: 266 NDGELTKKLTHPTHGVRKIYHVILDRKLDYKDFMKVQDGLELEDGLIEVDEISYVNDKPK 325 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N + + GRNR VRR++E +G QV +L RV + + K LPRG W L + L Sbjct: 326 N-EIGIKIHSGRNRIVRRIFEHLGYQVEKLDRVVFAGLT-KKDLPRGHWRRLTQQEVINL 383 Query: 241 REL 243 R + Sbjct: 384 RNM 386 >UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCEF2E Length = 296 Score = 277 bits (708), Expect = 4e-73, Method: Composition-based stats. Identities = 98/298 (32%), Positives = 137/298 (45%), Gaps = 17/298 (5%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M E+LQK+L+ AG SRR E +I AGRV+VDG R I +D I Sbjct: 1 MEERLQKILSNAGVASRRAAEDLIRAGRVAVDGVAVTELGRKFDPANHTITVDSKPI--- 57 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 +++ + KP G L T D GR TV D LP AR VGRLD +T G+LL T Sbjct: 58 -HSDEKRFYILLNKPRGYLSTARDDRGRKTVLDLLPD-FPARLYPVGRLDADTEGVLLIT 115 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG + L+HP E+++ Y V G V + L L RG+ LEDG A ++ + Sbjct: 116 NDGAITQGLLHPRFEIDKVYHAEVAGPVTEGGLTRLRRGILLEDGMTASAKLRILRADKG 175 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + EGRNR+VRR++ A+G +V L RVR+ + L +GL G + L + + L Sbjct: 176 YTVVETIIHEGRNRQVRRMFAAIGCRVCALRRVRFAMLTL-RGLSCGSFRHLTRDEIHEL 234 Query: 241 RELVEL-----------PPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGR 287 R + + P + RR + A R G+R R Sbjct: 235 RIIAGVMSSEEDCRRGCRPSGHDGSGRSRGMRRARPAPREDAACRPQDDDHGKRPLQR 292 >UniRef50_A5WGV6 Pseudouridine synthase n=7 Tax=Moraxellaceae RepID=A5WGV6_PSYWF Length = 345 Score = 277 bits (708), Expect = 5e-73, Method: Composition-based stats. Identities = 158/293 (53%), Positives = 201/293 (68%), Gaps = 5/293 (1%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +EKLQK LAR G GSRR++E +I+AGRVS++ K A +GDRVE G +IR+DG LI + Sbjct: 42 TEKLQKALARMGLGSRRQMEEVIKAGRVSINQKPASIGDRVE--QGDEIRVDGRLIKYKS 99 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 E+ RVLAYYKPEGE+C+ NDPEGR TVF+RLPKL RWI VGRLD+N+ GLLLFT Sbjct: 100 EREKRRRVLAYYKPEGEICSANDPEGRTTVFERLPKLTHDRWIMVGRLDINSTGLLLFTN 159 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGELA+RLMHPS E+ REYAVR+ G++ +R+L+ GV LEDG A F+ IK GGEG+N Sbjct: 160 DGELAHRLMHPSNEIVREYAVRILGELTPEMMRNLTDGVMLEDGLAKFEDIKQGGGEGVN 219 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +WY+V L EGRNREVRRL E+ G++VSRL+R YG + LPK L G + ELD + L Sbjct: 220 KWYHVKLKEGRNREVRRLIESQGLKVSRLLRTSYGSVDLPKELRTGRFIELDRKDIHRLI 279 Query: 242 ELVELPPETSSKV---AVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 +LV + P V A EK R K R ++ S+ S G+N + Sbjct: 280 DLVGIRPREDMGVHGKAKEKKERFQKKPMKARTIRTSSRSGRASTSTGKNTSA 332 >UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVQ2_DICNV Length = 266 Score = 276 bits (707), Expect = 6e-73, Method: Composition-based stats. Identities = 121/261 (46%), Positives = 163/261 (62%), Gaps = 7/261 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 ++++QK LA G GSRR+IE+ I+ GR+ VDG++A+LG ++ ++ +DG + + Sbjct: 8 AQRIQKYLAARGVGSRRQIETWIKEGRLKVDGRVAELGQKISGNE--RLSLDGKPLRIAV 65 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + +L Y+KP GE+CTR DPEGR +VF LPK+ RW+A+GRLD+NT GLLLFT Sbjct: 66 EHKNPHMILMYHKPAGEICTRKDPEGRVSVFQHLPKISHGRWVAIGRLDLNTSGLLLFTN 125 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTI-----KFSG 176 DG LAN+LMHPS E+EREY VRV G+V + L L +G+ L+DG A F I Sbjct: 126 DGALANQLMHPSAEIEREYWVRVAGEVTEEMLTALRQGIPLDDGLARFTEICPLKTLHED 185 Query: 177 GEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 N++++VTL EGRNREVRRLWEAVG +VSRL R+RYG I LP L G L + Sbjct: 186 DTQFNRYFSVTLKEGRNREVRRLWEAVGCKVSRLKRIRYGTISLPPSLSAGRHRLLTAGE 245 Query: 237 TNYLRELVELPPETSSKVAVE 257 L LV + Sbjct: 246 QASLISLVSEKNRRDNSPKPR 266 >UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=B2A4P2_NATTJ Length = 238 Score = 276 bits (707), Expect = 6e-73, Method: Composition-based stats. Identities = 80/244 (32%), Positives = 131/244 (53%), Gaps = 9/244 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK ++RAG SRR+ E +I+ GRV+V+G++ +++DG I+ Sbjct: 1 MRLQKFMSRAGIASRRKSEELIQQGRVTVNGQVITRLGTKINPDTDTVKVDGEPITQ--- 57 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E+ + KP+ + +++DP+GR TV D + R VGRLD ++ GL+L T D Sbjct: 58 -EESNVYIMLNKPKDYITSKDDPQGRKTVMDLI--QVKERVYPVGRLDYDSRGLVLLTND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRLMHP + + Y V+V KL +L G+ LE+G ++ N Sbjct: 115 GELANRLMHPKYNIPKTYMVKVDKLPLQDKLDNLVNGIYLEEGLCKADHVEILDT--KNN 172 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + L+EGR R++RR+ ++G++V L R G + L K L G + +L + + +++ Sbjct: 173 ILKIILSEGRKRQIRRMLASLGIEVKDLKRDSLGTLTL-KDLSEGNYRKLTKDEIDNIKK 231 Query: 243 LVEL 246 L L Sbjct: 232 LAGL 235 >UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9GX03_SORC5 Length = 399 Score = 276 bits (706), Expect = 7e-73, Method: Composition-based stats. Identities = 100/294 (34%), Positives = 142/294 (48%), Gaps = 10/294 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M E+LQK++ARAG SRR E +I AGRV V+G++ +I +DG + Sbjct: 1 MEERLQKIIARAGVASRRASEELILAGRVRVNGRVVTELGLKADRQKDRIEVDGKRL--- 57 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + +A +KP + T DPEGRPTV D + + GAR VGRLD T G+LL T Sbjct: 58 --VSEAPVYVALHKPRNVVSTLRDPEGRPTVADHV-RGTGARLYPVGRLDFATSGILLMT 114 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG+ AN L+HP V + Y ++V G + D L G++LEDG + EG Sbjct: 115 NDGDFANALLHPRGGVPKTYVLKVQGVMSDDDLTPWREGIRLEDGVTLPAEARLLRHEGD 174 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 W VTL EGRN+++RR+ EA G V RL R + + +GL G W L + + ++ Sbjct: 175 KTWLEVTLREGRNQQIRRMGEATGWPVMRLARTTFAGVS-SEGLRPGEWRALTVDELLHI 233 Query: 241 RELVELPPETSSKVAVEKDRR---RMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 RE +P V R A+ R K + + + G Sbjct: 234 REAFGVPKRIRGAVMGASSGPVDHRRTASSARSGAKASPRPTQEAAGAAARSRG 287 >UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WE21_VEREI Length = 520 Score = 276 bits (706), Expect = 8e-73, Method: Composition-based stats. Identities = 134/290 (46%), Positives = 181/290 (62%), Gaps = 6/290 (2%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 KL KVLA+AG GSR E+E +I GR+SV+ + A +G R++ G +++++G I R Sbjct: 172 KLHKVLAQAGLGSRLEMEQLILEGRISVNNEPAHIGQRIQF--GDQVKVNGKPIRYRIDP 229 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 RV+AY+KP GE+ + +DP RPTVF RLP+L +W +VGRLD+NT GLLL T+ G Sbjct: 230 P-PARVIAYHKPVGEVVSHDDPHNRPTVFRRLPRLVQGKWQSVGRLDLNTEGLLLLTSSG 288 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 ELAN+LMHP +EREYAVRV G + + + + L GV+L+DG A+F TI+ GGEG N W Sbjct: 289 ELANQLMHPRFGLEREYAVRVLGALSNEEKQKLLDGVRLDDGIASFGTIEDGGGEGANCW 348 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 Y VT+ EGRNREVRR+ EAVG VSRLIR+RYG + LP+GL RG W ELD L + Sbjct: 349 YRVTIAEGRNREVRRMLEAVGHAVSRLIRIRYGAMVLPRGLKRGTWLELDERDIRALAQA 408 Query: 244 VELPP---ETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNN 290 T + ++R ++ R + G +G R N Sbjct: 409 AGARAPALSTRTPTDARAGKQRERSGPPMGNGPRRGRSPQGPAAGARAQN 458 >UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr0361 n=21 Tax=Cyanobacteria RepID=Y361_SYNY3 Length = 249 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 95/252 (37%), Positives = 128/252 (50%), Gaps = 8/252 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M+E++QK+L++ G SRR E +I AGRVSV+GK+A LGD+ + + +DG I Sbjct: 1 MAERIQKLLSQWGIASRRHAEEMILAGRVSVNGKVANLGDKADP-QQDFLSVDGKQIKAD 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLL 118 L KP L T +DP GR TV D LP+ RG VGRLD N+ G LL Sbjct: 60 NRPRD--IYLLVNKPRDVLSTCDDPRGRKTVLDLLPQDLQRGKGLHPVGRLDRNSTGALL 117 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DGEL RL HP + + Y V + G D L G+ L+ T++ Sbjct: 118 LTNDGELTLRLTHPRYHLPKTYDVWLEGNPSDEDLEKWRSGMMLDGKKTLPATLEVISEN 177 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPL---PKGLPRGGWTELDLA 235 VTLTEGRNR++RRL E +G+ V +L R G + L K L G + L A Sbjct: 178 KDQIHLLVTLTEGRNRQIRRLAEELGLTVLKLHRRTIGPLQLHTRGKVLGSGQFRFLSPA 237 Query: 236 QTNYLRELVELP 247 + L++ V L Sbjct: 238 EIRLLKKQVNLR 249 >UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA52_9PORP Length = 472 Score = 275 bits (703), Expect = 1e-72, Method: Composition-based stats. Identities = 84/273 (30%), Positives = 134/273 (49%), Gaps = 10/273 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 61 +L K L+ +G SRR + I AGRV V+G + +LG +V P ++ +D +++ Sbjct: 206 IRLNKFLSNSGLCSRRTADQYIAAGRVKVNGAVVSELGSQV--LPTDQVMVDDKPVTLEA 263 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + KP+ + T DPEGR TV D + R +GRLD NT G+LL T Sbjct: 264 K-----VYVLLNKPKNCVTTLTDPEGRRTVMDLVHNACTERIYPIGRLDRNTTGILLLTN 318 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+LA RLMHP+ ++ Y V + +V ++ ++ G +LEDG I + G+ + Sbjct: 319 DGDLAVRLMHPAFRKKKIYEVALDKEVTVEHMQMIAHGFELEDGEIHADAISYITGQ-TH 377 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + GRNR VRR++E +G +V L RV Y + K LPRG W L + YLR Sbjct: 378 DKVGIEIHSGRNRIVRRIFEHLGYRVVHLDRVYYAGLT-KKDLPRGRWRYLTPEEVRYLR 436 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKR 274 ++ + + + + + + Sbjct: 437 MGIKEQEDNGVAPTTKVYHKHQETPDHPFSSEE 469 >UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria RepID=Q1LLR3_RALME Length = 631 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 137/277 (49%), Positives = 180/277 (64%), Gaps = 3/277 (1%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA G GSRRE+E +I GRVSV+G A +G R+ P ++R++G LI R+ Sbjct: 234 APKLHKVLAEGGLGSRREMEELILQGRVSVNGLPAHIGQRI--LPTDQVRVNGKLIH-RK 290 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + RVL Y+KP GE+ +++DPEGRPTVFD LP+++ +W+AVGRLD NT GLL+FTT Sbjct: 291 VTTKPPRVLLYHKPSGEIVSQSDPEGRPTVFDSLPRIKNGKWVAVGRLDFNTEGLLIFTT 350 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G++ANR MHP VEREYAVR G++ +A + L G+QL+DG A F I GGEG+N Sbjct: 351 SGDIANRFMHPRYGVEREYAVRTLGELAEADRQRLLHGIQLDDGEANFLRIADGGGEGVN 410 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 QWY+V LTEGRNREVRR++EAVG+ VSRLIR RYG LP+GL RG W ELD L Sbjct: 411 QWYHVALTEGRNREVRRMFEAVGLTVSRLIRTRYGQFLLPRGLKRGRWQELDPTDVRGLM 470 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQV 278 + L + + K ++ + R Sbjct: 471 ANIGLKAPSKEAQSGGKGVTKVGGRKQREEAALAGMP 507 >UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales RepID=B1XJP9_SYNP2 Length = 259 Score = 273 bits (700), Expect = 4e-72, Method: Composition-based stats. Identities = 86/245 (35%), Positives = 125/245 (51%), Gaps = 6/245 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M+E++QK+LAR G SRR E +I AGRV+++GK +LGD+ + G ++ +DG + Sbjct: 1 MAERVQKILARWGIASRRGAEKLILAGRVTLNGKPVQLGDQADP-EGDRLCVDGKPLKAT 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLL 118 E +KP+G + T DP+GR TV D LP +G +GRLD + G LL Sbjct: 60 ERP--RHYYYLIHKPKGVVSTCADPKGRSTVLDLLPPPLRQGKGIHPIGRLDAQSTGALL 117 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG L HP + + Y V + G+V + L +GV L D I Sbjct: 118 LTNDGNFTLALTHPRYHIPKTYRVWLKGKVPEHVLDQWRQGVMLGDRRTLPTQIHLKTIT 177 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 ++ LTEGRNR++RR+ E +G V +L R+ G++ L L RG L A+ Sbjct: 178 QDKTCIDIMLTEGRNRQIRRVAEQLGFPVVKLHRLAIGNLHLG-DLQRGQARPLTKAEIK 236 Query: 239 YLREL 243 LR Sbjct: 237 QLRSQ 241 >UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD7 Length = 247 Score = 273 bits (699), Expect = 4e-72, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 131/245 (53%), Gaps = 10/245 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M E+LQKV+A++G+ SRR+ E +I+ G+V+V+G++ + +VT I ++G LI+ Sbjct: 1 MEERLQKVIAQSGYTSRRKAEELIQQGKVTVNGEVVTV-LGTKVTKKDTICVNGKLIN-- 57 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 ++ +YKPE +CT +D R V D R VGRLD +T G L T Sbjct: 58 ---KEDKVYYLFYKPEKCVCTMSDEHDRTCVADYFAD-SNERVYPVGRLDYDTTGALFMT 113 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFS--GGE 178 DGE AN +MHPS +E+ Y V V G + A+ L +G+ LE I + E Sbjct: 114 NDGEFANLIMHPSSHLEKVYEVSVKGLLTKAEKNQLEKGIYLEGVKTLPCEIAITGNDEE 173 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 + L EG+NR++++++E VG V RL R+ G I L KGL G + L + N Sbjct: 174 HGTTMLLIRLVEGKNRQIKKMFEEVGHPVKRLRRIMIGPIDL-KGLTPGTYRRLKPHEVN 232 Query: 239 YLREL 243 LR + Sbjct: 233 VLRTM 237 >UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX41_SYNWW Length = 239 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 78/247 (31%), Positives = 122/247 (49%), Gaps = 8/247 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K LA +G SRR+ E +I G+V V+ K + PG ++ G +I Sbjct: 1 MRLAKYLAESGISSRRQAERLITQGKVKVNDKTITE-LAFTLKPGDRVEFAGKIIE---- 55 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + L +KP G + + DP+GRP V D L R VGRLD +T GLLL + D Sbjct: 56 -QTDKIYLLLHKPAGYISSLADPQGRPRVIDLLS-AVNTRVFPVGRLDYDTEGLLLLSND 113 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GE +N + HP + ++Y V G V +R L +GV LEDG A ++ + Sbjct: 114 GEFSNLMTHPRYLIPKKYEAWVQGLVKPDTIRQLEQGVALEDGITAPARVRLLSSKKGQS 173 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + EG+ R+++R+ AVG +V++L R + L +G+PRG + L ++ L Sbjct: 174 LLELEIHEGKKRQIKRMCLAVGHRVTKLKRTALAFLTL-EGVPRGQFRFLTASEVESLIM 232 Query: 243 LVELPPE 249 L + Sbjct: 233 LARQSGK 239 >UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZD4_9DELT Length = 240 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 118/242 (48%), Gaps = 6/242 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M+E+LQK LARAG SRR+ E I GRV VDG+ ++ DG + Sbjct: 1 MAERLQKFLARAGIASRRKAEEYIAQGRVQVDGRPVAQMGLTIDPERQQVTFDGQPV--- 57 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + KP G + T DP+GRP V + + G R VGRLD++T G LL T Sbjct: 58 -LPPSRKLTVLLNKPAGYVTTMADPQGRPIVTSLINE-PGLRLFPVGRLDLDTEGALLLT 115 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELA ++HPSR++ R Y V G+ + L+ L RG+ LE I+ Sbjct: 116 NDGELAQNILHPSRQINRTYHATVKGRPNREALQQLRRGIMLEGRRTWPARIRELRRNQE 175 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + V + EGR R+VR+++ A+ V +L RV YG + L LP G + L L Sbjct: 176 STTLEVIIHEGRKRQVRKMFAAINHPVLQLKRVAYGGLRLGS-LPTGRYRRLSPEDLQLL 234 Query: 241 RE 242 Sbjct: 235 FR 236 >UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q31GA0_THICR Length = 317 Score = 272 bits (697), Expect = 8e-72, Method: Composition-based stats. Identities = 135/279 (48%), Positives = 181/279 (64%), Gaps = 5/279 (1%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 EKLQK+LAR G GSRRE+E +I G V V+GK+A LGDR P ++++ L+ Sbjct: 18 EKLQKILARGGFGSRREVEKLISQGLVKVNGKVATLGDRAF--PTDTLKVNDQLVKETRL 75 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 +Q +V+ Y KPEG++C+R D +GR T+F LP++ +RWI+VGRLD+NT GLL+ T + Sbjct: 76 EKQPTQVILYNKPEGQVCSRKDEKGRETIFTSLPRIINSRWISVGRLDINTSGLLILTNN 135 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFS---GGEG 179 GELANRLMHPS E+EREY+VRVFG+V D L L +GV+LEDG A F++I + Sbjct: 136 GELANRLMHPSYEMEREYSVRVFGEVSDEILDRLKKGVKLEDGFAKFESIGKIPQQEEDS 195 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 INQWY V + EGRNREVRR+WE+ GVQVSRL+R RYG LP+ L RG L Q N Sbjct: 196 INQWYRVVIKEGRNREVRRIWESQGVQVSRLVRTRYGQFSLPRNLRRGKSEPLTWKQINQ 255 Query: 240 LRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQV 278 L + V+LP E + + + A + K+ + Sbjct: 256 LLKSVDLPEEPRPDLRNNPAKAKKMAARHAEPFKKETGR 294 >UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KIR7_9FIRM Length = 250 Score = 272 bits (697), Expect = 9e-72, Method: Composition-based stats. Identities = 100/251 (39%), Positives = 136/251 (54%), Gaps = 14/251 (5%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVR 60 E+LQK++++AG SRR E +I GRV VDG++ +LG +V+ I +DG I Sbjct: 4 EERLQKIISQAGIASRRAAEKMILEGRVRVDGQVVRELGTKVDPAAH-TILVDGKKI--- 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + E+ L KP+G L T D GR TV D LP++R R VGRLD NT GLLL T Sbjct: 60 -AGEEQHVYLLLNKPKGYLSTAKDDRGRRTVLDLLPEVR-ERVYPVGRLDNNTEGLLLIT 117 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG L N L+HP EVE+ Y V G++ + KL+ L G+ LEDG A + Sbjct: 118 NDGALMNGLLHPRFEVEKTYHAGVTGKLTEEKLQMLRDGLLLEDGMTAPAKVSLLPEREP 177 Query: 181 NQWYN------VTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDL 234 + +T+ EGRNR+VRR++ AVG V L RVR+ + L KG+ RG L Sbjct: 178 GERVRGLTRAAITIHEGRNRQVRRMFAAVGCDVKSLKRVRFAGLTL-KGVARGQHRALTE 236 Query: 235 AQTNYLRELVE 245 + + L L Sbjct: 237 EEVSSLYRLAG 247 >UniRef50_Q1H048 Pseudouridine synthase n=4 Tax=Betaproteobacteria RepID=Q1H048_METFK Length = 383 Score = 272 bits (695), Expect = 1e-71, Method: Composition-based stats. Identities = 134/296 (45%), Positives = 187/296 (63%), Gaps = 10/296 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++L K+LA AG GSRRE+E++I +GR++++GK A++G V P +R+D + + Sbjct: 29 QRLHKLLALAGFGSRREMETLIASGRITINGKTAEVGASVV--PSDVVRLDSRPLRLPFE 86 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E + +VL Y+KPEGE+ + +DPE R +VFD+LP++R +WIA+GRLD+NT GLL+FTT Sbjct: 87 PE-LPQVLLYHKPEGEIVSHDDPENRASVFDKLPRIRNGKWIAIGRLDMNTSGLLIFTTS 145 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANR MHP EVEREYAVR+FG++ + ++ L+ G++L+DGPA F +I+ GGEG N Sbjct: 146 GELANRFMHPRYEVEREYAVRIFGELTEGEMAQLTYGIELDDGPANFDSIRPQGGEGANH 205 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 WY V L EGRNREVRRL+EA VSRLIRVR+G + LP L RG L + L E Sbjct: 206 WYEVILREGRNREVRRLFEAFQKPVSRLIRVRFGPVNLPPRLKRGQMIHLGAKEVTALLE 265 Query: 243 LVELPPETSSKVAVEKDRR-------RMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 EL + + + KA + R + H + G RR G Sbjct: 266 WAELAVPKAVPRQLSPREKEKLGKVFTPKARKSRFDPEAHLESRGPRRVTKAREEG 321 >UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrionales RepID=C4XSY8_DESMR Length = 322 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 104/300 (34%), Positives = 144/300 (48%), Gaps = 16/300 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ K LA AG SRR + +I AGRV+V+G + + +DG +++ A Sbjct: 10 RINKALASAGVCSRRHADDLIAAGRVTVNGAVVTEAGLRIDPARDALAVDGAPVNL---A 66 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKL-RGARWIAVGRLDVNTCGLLLFTTD 122 +I LA +K G + T +DPEGRPTVFD LP++ RG R VGRLD + GLLL TTD Sbjct: 67 PEIPITLALHKKPGVVTTASDPEGRPTVFDGLPEVWRGKRLFPVGRLDFFSEGLLLLTTD 126 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL-EDGPAAFKTIKFSGGE-GI 180 GELA RL HP V + Y V V GQV L ++RG++L E A + G Sbjct: 127 GELALRLTHPRWHVPKRYRVTVRGQVTPDMLGTMARGMRLAEGERLAPVAARVVEGPAQD 186 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + L +G NR++RR+ +G+ V RL RV G + L LP G EL A+ L Sbjct: 187 RSILEMELHQGVNRQIRRMCRDLGLTVLRLARVSQGPVALG-DLPLGACRELTPAELATL 245 Query: 241 RELVELPPET---------SSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 R+ V L + K R + ++ SGG G +G Sbjct: 246 RQSVGLDDADVAPAPPRPRPTAEGDTKRPPRPARPPQAGGKRPATKASGGETETGPRRDG 305 >UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C4Z9Y4_EUBR3 Length = 250 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 121/242 (50%), Gaps = 8/242 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ G G+R E++ +I+ G+++++G +A + T ++ ++G ++ Sbjct: 12 IRLDKFLSEMGLGTRSEVKKLIKTGQIAINGTVAAKPETKVDTDADEVSVNGRIVKY--- 68 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 Q + KP G + D TV D + VGRLD++T GLLL T D Sbjct: 69 --QRYEYYLFNKPSGCVSATCD-NVHDTVMDYITDAVHDDLFPVGRLDIDTEGLLLITND 125 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL-EDGPAAFKTIKFSGGEGIN 181 G L++ L+ PS+ V + Y R+ G+V + G+ + E+ P + G Sbjct: 126 GALSHELLSPSKHVAKTYYARIDGEVTLDDIIRFKEGIDIGEEKPTKPAEL-VIKKSGSV 184 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +T+TEG+ +V+R++EA+G +V L R+ G + LP L G + L A+T+ L Sbjct: 185 SEIELTITEGKFHQVKRMFEALGKRVIYLKRISMGPLKLPDDLKTGTYRALTQAETDMLM 244 Query: 242 EL 243 ++ Sbjct: 245 QI 246 >UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=Q65HX7_BACLD Length = 244 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 132/245 (53%), Gaps = 10/245 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKV+A AG SRR+ E +I+ GRV+V+GK + V+V+ +I ++G + Sbjct: 2 ERLQKVIAHAGIASRRKAEELIKEGRVTVNGKTVRE-LGVKVSSSDRIEVNGVQLE---- 56 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + YKP G + D +GR V D ++ R +GRLD +T GLLL T D Sbjct: 57 -SEEPVYFLLYKPRGVISAVKDDKGRKVVTDFFTEVE-ERIYPIGRLDYDTSGLLLLTND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF--SGGEGI 180 G+ AN+LMHP E+ + Y ++ G L+ L RGV+LEDG A +K + Sbjct: 115 GDFANKLMHPKYEINKTYVAKLKGIPLKENLKKLERGVRLEDGKTAPAKVKLLSLDKKKQ 174 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +T+ EGRNR+VRR++EA+G +V +L R Y + L GL G EL + L Sbjct: 175 TSIVQITIHEGRNRQVRRMFEAIGHEVLKLKREEYAFLNLA-GLKTGEKRELTPHEVKRL 233 Query: 241 RELVE 245 R L E Sbjct: 234 RALAE 238 >UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3JBA6_9PORP Length = 459 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 82/239 (34%), Positives = 121/239 (50%), Gaps = 8/239 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K LA +G SRR + +I G VSV+G+I + VT I +DG +S+ + Sbjct: 225 RLNKFLASSGVCSRRVADQLIVDGHVSVNGEIVTQLGKH-VTREDFISVDGKPVSIEKKI 283 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + KP + T +DPE R T D + R VGRLD NT GLLL T DG Sbjct: 284 -----YVLLNKPRNCVTTSSDPEKRLTAIDLVRNACNERIYPVGRLDRNTTGLLLLTNDG 338 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 +LA +LMHP E ++ Y V + V ++ ++ G++LEDG I + + Sbjct: 339 DLAAKLMHPKYEKKKIYQVTLDKPVSVEHMQQIASGIELEDGEIHADAISYVDENNLA-I 397 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + GRNR VRR+++ +G +V +L RV + + K LPRG W L + LR Sbjct: 398 VGIEIHSGRNRIVRRIFKHLGYRVYKLDRVYFAGLT-KKDLPRGRWRYLTEDEVRNLRH 455 >UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria RepID=Q3MC44_ANAVT Length = 288 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 87/265 (32%), Positives = 126/265 (47%), Gaps = 9/265 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M +LQKVLA+ G SRRE E +I RV ++G +A+LG +V I +DG +S + Sbjct: 27 MEARLQKVLAQWGIASRREAEEMIRRSRVQINGTLAELGQKVNP-ERDIITVDGKSVSAQ 85 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLL 118 L KP G + T DP+GR TV D LP+ +G+ VGRLD + G L+ Sbjct: 86 RHHRLT--YLLLNKPTGVVSTCYDPQGRKTVLDLLPEELRKGSGLHPVGRLDAYSTGALI 143 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG+L +L HPS + + Y + V G +A L+ GV L+ + Sbjct: 144 LTNDGDLTFKLTHPSHNIPKTYQILVKGHPPEAVLKMWREGVLLDGRKTRKAKVSLLESL 203 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKG----LPRGGWTELDL 234 + L EGRNR++RR+ E +G V +L R G I L L G + L Sbjct: 204 AEKSRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAIGSIQLQTSKQPLLRAGNYRILRD 263 Query: 235 AQTNYLRELVELPPETSSKVAVEKD 259 + L+E ++ P KV + Sbjct: 264 DEIRSLQEQLKHIPTQRIKVQNPQP 288 >UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria RepID=C7I043_THIIN Length = 562 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 149/271 (54%), Positives = 186/271 (68%), Gaps = 6/271 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA++G GSRRE+E +I AGRVSV+G+ A LG R+ P +IR++G +I R Sbjct: 171 APKLHKVLAQSGVGSRREMEDLILAGRVSVNGEPAHLGQRI--LPTDQIRVNGKIIKRRL 228 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 Q RVLAY+KP GE+ + DPEGRPTVF LPKL+GA+W AVGRLD+NT GLLLFTT Sbjct: 229 RPAQA-RVLAYHKPTGEVVSFKDPEGRPTVFQHLPKLQGAKWTAVGRLDINTEGLLLFTT 287 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+LANRLMHPS EREYAVRV G++D A +L GVQL DGPA F +++ +GGEG N Sbjct: 288 SGDLANRLMHPSYGAEREYAVRVLGELDAAARDELLEGVQLGDGPARFLSLEEAGGEGAN 347 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +W+ V ++EGRNREVRR++EAVG+ VSRLIRVRY + LP GL RG + ELD + L+ Sbjct: 348 RWWRVVISEGRNREVRRMFEAVGLTVSRLIRVRYASVVLPAGLRRGDFVELDKSLVQALQ 407 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAV 272 E S RR NQ R Sbjct: 408 ---GRSGEAPSGAGDRPARRPNGQNQGGRRN 435 >UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72 RepID=A1K7C2_AZOSB Length = 356 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 147/263 (55%), Positives = 187/263 (71%), Gaps = 6/263 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKVLA+AG SRREIE ++ AGR+SV+G A LG ++ PG +++++G LI +R S Sbjct: 91 ERLQKVLAQAGVASRREIEELVVAGRISVNGLPASLGQKI--GPGDRVKLNGKLIPLRFS 148 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 ++ RVL Y+KPEGE+ +R+DPEGRPTVF+RLP LR RW+AVGRLD NT GLLLFT D Sbjct: 149 -QRSPRVLVYHKPEGEIVSRDDPEGRPTVFERLPLLRKGRWLAVGRLDFNTSGLLLFTND 207 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LANRLMHP E+ REYAVR+ GQ+ + + + L G+QLEDGPA F ++ +GGEG+N Sbjct: 208 GDLANRLMHPRYELTREYAVRLLGQLTEEQGQSLVDGIQLEDGPARFLSLVDAGGEGVNH 267 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 WY VTL EGRNREVRR++EAVG+ VSRL+RVRYG + LP L RG W EL A L Sbjct: 268 WYRVTLAEGRNREVRRMFEAVGLTVSRLMRVRYGPVELPARLKRGMWMELPEADACAL-- 325 Query: 243 LVELPPETSSKVAVEKDRRRMKA 265 LPP A R + Sbjct: 326 -AGLPPPRVDPSARGARREKAPR 347 >UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria RepID=Q140U9_BURXL Length = 633 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 141/285 (49%), Positives = 188/285 (65%), Gaps = 7/285 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA AG GSRR++E +I AGRVSV+G+ A +G R+ P ++RI+G + R+ Sbjct: 216 APKLHKVLAEAGMGSRRDMEELIVAGRVSVNGEPAHIGQRI--MPTDQVRINGKPVK-RK 272 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 A + RVL Y+KP GE+ + DPEGRP+VFD+LP ++ A+W+AVGRLD NT GLL+ TT Sbjct: 273 LASKPPRVLLYHKPTGEIVSHADPEGRPSVFDKLPPMKTAKWLAVGRLDFNTEGLLMLTT 332 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+LANR MHP VEREYAVRV G++ + + L GV+L+DGPA F I+ GGEG N Sbjct: 333 SGDLANRFMHPRYSVEREYAVRVVGELAEGMRQKLLHGVELDDGPANFLRIRDGGGEGTN 392 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 WY+V L EGRNREVRR++EA G+ VSRLIR R+G I LPKGL RG W EL+ Q L Sbjct: 393 HWYHVALAEGRNREVRRMFEAAGLMVSRLIRTRHGPISLPKGLKRGRWEELEDNQVRALM 452 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRA----VKRHSQVSGGR 282 V L T + + R + + ++ + + +S GR Sbjct: 453 ASVGLKAPTEERGSRNAAPERKQPDPMQTSMGFINREPVLMSHGR 497 >UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7P2_SPHTD Length = 337 Score = 270 bits (691), Expect = 5e-71, Method: Composition-based stats. Identities = 95/280 (33%), Positives = 134/280 (47%), Gaps = 8/280 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQ+VLA G SRR+ E +I AGRV+VDG++ + +IR+DG + Sbjct: 2 ERLQRVLAAHGVASRRKAEELITAGRVTVDGQVVRELGVRVDPERQEIRVDGKRLRPERR 61 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R + KP G + T +D GR TV D + R + GRLD T GLLL T D Sbjct: 62 -----RYIMLNKPPGYITTVSDERGRRTVMDLV--QVPERVVPAGRLDRPTAGLLLLTND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+L R+ HP E+E+EY V V G L L RGV ++ ++ E Sbjct: 115 GDLLFRITHPRYELEKEYEVLVDGHPPPEVLDQLRRGVTVDGERVVPDQVRPLRIEEAGT 174 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + EGRNR VRR+ + VG V +L R R G I + +G+P G W +L + L E Sbjct: 175 VLRIVIHEGRNRIVRRMMDRVGYPVLKLTRTRIGPIHV-RGVPLGAWRDLTPGEVMQLLE 233 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGR 282 V L P ++ + E RR + + G R Sbjct: 234 AVGLDPASAGRPLPEPGRRSDPGERRGEPRRSGPTRRGER 273 >UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1Y0J0_9BACT Length = 555 Score = 270 bits (690), Expect = 5e-71, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 131/240 (54%), Gaps = 10/240 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRES 62 +L K LA AG SRRE + I AG+V+V+G++ +LG ++ +++ L+S+ + Sbjct: 321 RLNKFLANAGVCSRREADDFILAGQVTVNGEVINELGTKI--LRTDEVKFQDKLVSLEKK 378 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP+ + T +DP+ R TV D + R VGRLD NT G+LLFT D Sbjct: 379 -----VYVLLNKPKDYVTTSDDPQQRKTVMDLVKDACPERIYPVGRLDRNTTGVLLFTND 433 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA++L HP ++ Y V + + +L+ +S G++LEDG I+++ E Q Sbjct: 434 GDLASKLTHPKFLKKKVYHVFLDKPITANELQKISDGIELEDGEIKADAIEYANPEDQAQ 493 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + G+NR VRR++E++G +V +L RV + + K + RG W L + LR Sbjct: 494 -VGIEIHSGKNRIVRRIFESLGYRVVKLDRVMFAGLT-KKNVRRGDWRFLTEKEVEMLRM 551 >UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae RepID=C8WAL4_ATOPD Length = 279 Score = 270 bits (690), Expect = 5e-71, Method: Composition-based stats. Identities = 88/277 (31%), Positives = 136/277 (49%), Gaps = 25/277 (9%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRE 61 +LQ+ LARAG SRR E ++ +GRV+V+G++ LG +V+ + + V Sbjct: 9 MRLQRFLARAGVASRRGSERLMTSGRVTVNGQVVTELGSKVDPLVDVV-----AVDGVVC 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 S + L KP G L T DP+GRPT+ D +P VGRLD++T GLL FTT Sbjct: 64 SIAEKPVYLMLNKPAGYLTTMKDPQGRPTIVDMVPTDTYPGLFPVGRLDMDTTGLLFFTT 123 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE--- 178 DG++A L+HPS+ V + Y V G + +L L G++LEDGPAA ++ + Sbjct: 124 DGQMAQELLHPSKHVWKHYVAHVVGTPTEEQLNRLREGIELEDGPAAPAEVEIISDDVKM 183 Query: 179 ---------------GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKG 223 N +VT+ EGR +V+++ A+ +V L R +G + L + Sbjct: 184 KNLLAPQGLGKTGGGEPNALVSVTIREGRKHQVKKMLLAIHHRVLALHRDTFGPLHLTR- 242 Query: 224 LPRGGWTELDLAQTNYLRELVELPPETSSKVAVEKDR 260 + G W L + L + P TS + + + Sbjct: 243 VKEGEWRLLTEEEVTALERTIGREPGTSPIMPLNTSK 279 >UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B n=200 Tax=Bacteria RepID=RLUB_BACSU Length = 244 Score = 270 bits (690), Expect = 5e-71, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 131/245 (53%), Gaps = 10/245 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKV+A AG SRR+ E +I+ G+V V+GK+ V+VT +I ++G + Sbjct: 2 ERLQKVIAHAGVASRRKAEELIKEGKVKVNGKVVTE-LGVKVTGSDQIEVNGLKVE---- 56 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + YKP G + D +GR V D + R +GRLD +T GLLL T D Sbjct: 57 -REEPVYFLLYKPRGVISAAQDDKGRKVVTDFFKNI-PQRIYPIGRLDYDTSGLLLLTND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF--SGGEGI 180 GE AN+LMHP E+++ Y +V G LR L RG++LE+G A K + Sbjct: 115 GEFANKLMHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGKTAPAKAKLLSLDKKKQ 174 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +T+ EGRNR+VRR++EA+G +V +L R Y + L +GL G EL + L Sbjct: 175 TSIIQLTIHEGRNRQVRRMFEAIGHEVIKLKREEYAFLNL-RGLHTGDARELTPHEVKRL 233 Query: 241 RELVE 245 R L + Sbjct: 234 RALAD 238 >UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RK43_PORG3 Length = 439 Score = 269 bits (689), Expect = 7e-71, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 125/240 (52%), Gaps = 8/240 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ AG SRRE + +IE G ++V+G++ R +T ++ + + Sbjct: 204 IRLNKFLSNAGVCSRREADLLIEKGEITVNGEVVTELGR-RITRQDEVIYKDKRVEIESK 262 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP+ + T +DPE R TV D + R VGRLD NT G+LL T D Sbjct: 263 -----VYVLLNKPKNCVTTSDDPECRTTVMDIVRYACPERIYPVGRLDRNTTGVLLITND 317 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA++L HPS + ++ Y V + V ++ ++ GV+L+DG I + + + Sbjct: 318 GDLASKLTHPSFKKKKIYHVWLNKDVSIEDMQKIADGVELDDGEIHADAISYVKEDDL-S 376 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + GRNR VRRL+E +G +V +L RV + + K LPRG W L+ + N LR Sbjct: 377 QVGIEIHSGRNRIVRRLFEHLGYRVVKLDRVYFAGLT-KKNLPRGKWRYLNEQEVNNLRM 435 >UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formigenes RepID=C3X1E1_OXAFO Length = 510 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 139/301 (46%), Positives = 185/301 (61%), Gaps = 16/301 (5%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL KVLA AG GSRR++E +I AGRVSV+G+ A +G R+ P ++R++G LI R+ Sbjct: 173 APKLHKVLADAGLGSRRDMEELIVAGRVSVNGEPAHIGQRI--LPTDQVRLNGKLIQ-RK 229 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 A+ + RVL Y+KP GE+ +R+DPE RP+VFDRLP L+ ++W+AVGRLD NT GLLLFT Sbjct: 230 IAKSLPRVLTYHKPAGEIVSRDDPEKRPSVFDRLPLLKNSKWLAVGRLDFNTEGLLLFTN 289 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+LANRLMHP +EREYAVR G++++ + L GV L DG F I GGEG+N Sbjct: 290 SGDLANRLMHPRYNIEREYAVRTLGELEEGMRQKLLAGVDLGDGIGQFSKIVDGGGEGVN 349 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +WY VT+ EGRNREVRR++EAVG+ VSRLIR RYG + L + L RG W EL+ L Sbjct: 350 KWYRVTIGEGRNREVRRMFEAVGLTVSRLIRTRYGAVVLSQSLKRGRWDELEENAVRNLL 409 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRA-------------VKRHSQVSGGRRSGGRN 288 L L + K + R + + GG++ RN Sbjct: 410 RLSGLDNKDDKKTQGKTRSRNASGQYPDFPKSQSLSIRELQLQGQHQKKSPGGQKGSPRN 469 Query: 289 N 289 Sbjct: 470 R 470 >UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales RepID=C7H5G4_9FIRM Length = 294 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 97/289 (33%), Positives = 146/289 (50%), Gaps = 16/289 (5%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 E++QK++A G SRR E II GRV V+G K+GD+++ + +D I +++ Sbjct: 20 EERIQKIMAEQGLCSRRAAEQIIAEGRVKVNGHPVKVGDKMDPN-RDVLHVDDERIYIQK 78 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + Q LA YKP G + T +D GR TV + + + AR VGRLD ++ GLLL T Sbjct: 79 N--QQLYYLALYKPRGYVTTASDELGRKTVMELVSDI-PARLYPVGRLDKDSEGLLLMTN 135 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGEGI 180 DG A + HPS + + Y V V + D++++ +S GV L+DG I E Sbjct: 136 DGAFAQAVTHPSGGISKLYRVTVQPRADESQILKMSSGVVLDDGTKTMPCAINVVTDEPG 195 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +TL EG+NRE+RR+ EAVG++V RL R G + L L G + EL A+ + L Sbjct: 196 RTVMEMTLKEGKNREIRRMCEAVGLEVVRLKRNAEGVVKLG-MLKPGTYRELTKAEVSGL 254 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNN 289 R + A + + R A Q + A +R G + + Sbjct: 255 R----------AAAAKGRAQTRSAALQSKAAARRPKGPVGSGNAPAKRR 293 >UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae RepID=C5CXG1_VARPS Length = 604 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 133/286 (46%), Positives = 188/286 (65%), Gaps = 4/286 (1%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 KL KVLA+AG GSR E+E++I GR+SV+ + A +G R++ G +++I+G I R + Sbjct: 199 KLHKVLAQAGLGSRLEMEALILQGRISVNNEPAHIGQRIQY--GDQVKINGKPIRYRIAP 256 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 RV+AY+KP GE+ T +DP+ RPTVF +LP+L+ +W +VGRLD+NT GLLLF++ G Sbjct: 257 P-PPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPRLQQGKWQSVGRLDLNTEGLLLFSSSG 315 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 +LAN+LMHP +EREYAVRV G ++ + + L GV+L+DG A F TI+ GGEG N W Sbjct: 316 DLANQLMHPRFGLEREYAVRVLGALNAEEKKKLLEGVRLDDGMAQFGTIEEGGGEGSNHW 375 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 Y VT++EGRNREVRRL+E+VG VSRLIR+RYG + LP+GL RG W ELD + L + Sbjct: 376 YRVTISEGRNREVRRLFESVGHAVSRLIRIRYGAMVLPRGLKRGAWMELDERDISALFQA 435 Query: 244 VELPPETSSKVAVEKDRRRMKANQIRRAVKRH-SQVSGGRRSGGRN 288 + + + R KR ++ +GG + R+ Sbjct: 436 SGGGAPRPPQQQRGPGQEGAGGGRNGRNKKRRGNRNAGGGQQQPRD 481 >UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=A6GNL7_9BURK Length = 458 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 133/276 (48%), Positives = 188/276 (68%), Gaps = 4/276 (1%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 ++ KL KVLA +G GSRRE+E +I AGRVSV+ + A LG RV P ++R++G LI + Sbjct: 67 LAPKLHKVLADSGMGSRREMEELIVAGRVSVNAEPAHLGQRV--LPTDQVRVNGKLIQRK 124 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 ++ RVL Y+KP GE+ + +DP+GR TVF +LPK+ +WIAVGRLD NT GLLLFT Sbjct: 125 NKSK-PPRVLIYHKPAGEIVSMDDPQGRTTVFQKLPKISNGKWIAVGRLDFNTEGLLLFT 183 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 + GELANRLMHP EV+REYAVR+ G++ + + + L G+QLEDGPA F + +GGEG Sbjct: 184 SSGELANRLMHPRYEVQREYAVRILGELSEEQRQQLLTGIQLEDGPAKFLYVDAAGGEGA 243 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+WY V L EGRNREVRR++EA + VSRLIR R+GDI +P L RG E++ + Sbjct: 244 NRWYKVGLKEGRNREVRRMFEACNLTVSRLIRTRFGDIMMPSTLKRGRHMEMEALEAMSY 303 Query: 241 RELVELP-PETSSKVAVEKDRRRMKANQIRRAVKRH 275 + + L E++ + A+ +D++ + + +R + Sbjct: 304 MQSLGLKVDESAQEGAIRRDKKNIGSKNNKRRNGQP 339 >UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine synthase B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3D27 Length = 271 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 102/280 (36%), Positives = 140/280 (50%), Gaps = 11/280 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDG-KIAKLGDRVEVTPGLKIRIDGHLISVRE 61 E+L K LA AG GSRR + +I AGRV V+G K+ +LG +++ + +I +D + Sbjct: 2 ERLNKYLAHAGVGSRRHCDKLISAGRVKVNGVKVTELGLKIDPSAH-QIAVDDQPVR--- 57 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + A KP G LCT +DP GRP D LP + R VGRLD + GLLL T Sbjct: 58 --AEKLVYWAVNKPVGHLCTNHDPAGRPRAVDLLPHVE-QRVYTVGRLDEGSDGLLLMTN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+LA L HP V + Y V V G+ D L+ L GV L DG K+ K +G Sbjct: 115 DGDLAQGLTHPRYGVPKMYFVLVAGRPTDDDLQKLMDGVWLSDGKVRAKSAKRIKAQGNG 174 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W V LTEG+NRE+RR+ G +V RL RV G + L K LP+G + + L+ Sbjct: 175 TWVRVVLTEGKNREIRRMLAKFGHKVMRLKRVAIGPVKLDK-LPKGKARRISDEELKALK 233 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGG 281 V + + ++ K + A KR + G Sbjct: 234 AFVTRARQKITAARLKAADGGRKT--SQDAPKRPRKTDGA 271 >UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales RepID=A6LIA0_PARD8 Length = 495 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 120/240 (50%), Gaps = 8/240 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ AG SRRE + I+ G V V+ + ++T + + + + Sbjct: 260 IRLNKFLSNAGVCSRREADEFIQKGAVKVNDVVVTE-LGTKITRQDVVTFNEKPVQIESK 318 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP+ + T +DP+ R TV D + R VGRLD NT G+LL T D Sbjct: 319 -----VYIVLNKPKNCVTTSDDPQERLTVMDLVKNACQERIYPVGRLDRNTTGVLLLTND 373 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA++L HPS + ++ Y V + V + ++ G++LEDG I ++ + Sbjct: 374 GDLASKLTHPSFKKKKIYHVWLDKNVAIEDMEKIANGLELEDGEIHADAISYASED-DKS 432 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + GRNR VRR++E++G V++L RV + + K L RG W L+ + N LR Sbjct: 433 QVGIEIHSGRNRIVRRIFESLGYHVTKLDRVYFAGLT-KKNLGRGKWRYLNEREVNALRM 491 >UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium RepID=C6JI84_FUSVA Length = 236 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 123/242 (50%), Gaps = 8/242 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 ++ K LA G SRRE++ +IE G + ++G+ A G ++V+ +I I G I Sbjct: 3 EMRINKYLASLGIASRREVDKMIEEGSIKINGEKATPG--IKVSDKDEIYIRGKKIE--- 57 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + KP L + D GR TV D + R +GRLD NT GL++ T Sbjct: 58 KHTEKKVYYILNKPLEVLSSSKDDRGRKTVVDLI--NCKERIFPIGRLDYNTSGLIILTN 115 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGEL NR++HP E+ +EY V+V G++ + + L GV+L+DG ++ E Sbjct: 116 DGELFNRIIHPKAEIFKEYYVKVLGEIKENNVELLKNGVELDDGITLPANVRILRREKGK 175 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 V + EGRNR+VRR+ + + V L R + G++ L L G + EL + NYL Sbjct: 176 TELLVAIREGRNRQVRRMMDKINHPVITLRREKIGNLSLG-NLKLGEYRELTNDEINYLY 234 Query: 242 EL 243 L Sbjct: 235 SL 236 >UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae RepID=A5IKF7_THEP1 Length = 239 Score = 267 bits (684), Expect = 2e-70, Method: Composition-based stats. Identities = 74/250 (29%), Positives = 131/250 (52%), Gaps = 12/250 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + L+ +G G+R+E++ +I+ GRV+V+G++ L V+ + +DG ++ Sbjct: 1 MRLDRYLSNSGVGTRKEVKKLIKQGRVTVNGRVV-LDPGHSVSENDVVVLDGETVNFHRK 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + ++KP G + + DP T+ + LP L+G VGRLD + GLL+ T+D Sbjct: 60 -----VYILFHKPSGYVTSTKDPHSE-TIMEFLPPLKG--IFPVGRLDKDAEGLLIITSD 111 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+ A+R++ P VE+EY V+V G+V + K+ L GV L DG A + N Sbjct: 112 GDFAHRVISPKWSVEKEYIVKVEGEVTEDKIEKLKNGVTLRDGFFAKAKCV---EKLSND 168 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + +TEG+ +++R+ AVG++ L R R G + LP+ + G + L + + E Sbjct: 169 TLKIVITEGKYHQIKRMTVAVGLRTVHLKRTRIGRLVLPEDMKPGEYRFLSEEEVKKVFE 228 Query: 243 LVELPPETSS 252 + +T Sbjct: 229 REDQKEDTPR 238 >UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=A9ITY6_BORPD Length = 588 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 139/292 (47%), Positives = 190/292 (65%), Gaps = 7/292 (2%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 KL KVLA AG GSRRE+E +I AGRVSV+G+ A +G RV P ++R++G ++ R + Sbjct: 124 KLHKVLADAGIGSRREMEELITAGRVSVNGEPAHIGQRV--APSDQVRVNGKPVA-RPNT 180 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 ++ RV+ Y+KP GE+ + +DP GR +VF RLPKLR +W++VGRLD+NT GLL+FTT G Sbjct: 181 KKPPRVILYHKPAGEIVSHDDPGGRASVFARLPKLRTGKWLSVGRLDLNTEGLLIFTTSG 240 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 ++ANR+MHP EREYAVRV G++DDA + L G++LEDG AAF + + GG+G N+W Sbjct: 241 DMANRIMHPRYGTEREYAVRVLGEMDDATRKSLVEGIELEDGQAAFGALDYLGGDGSNRW 300 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 Y VTL EGRNREVRR++E+VGV VSRLIR R+GD+ LP+ L RG W ELD + L Sbjct: 301 YRVTLQEGRNREVRRMFESVGVTVSRLIRTRFGDLVLPRTLRRGRWEELDSSLVTALMVQ 360 Query: 244 VELPPETSSKVAV---EKDRRRMKANQIRRAVKRHSQVSGGR-RSGGRNNNG 291 + L + + R A + ++G R G+ G Sbjct: 361 LGLLRDDDDADGGRNARQPRSHDSALPPGFGTMDRNGMNGARIGRRGKLQGG 412 >UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID=C1XV14_9DEIN Length = 369 Score = 267 bits (684), Expect = 3e-70, Method: Composition-based stats. Identities = 93/281 (33%), Positives = 140/281 (49%), Gaps = 15/281 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQ+ LARAG SRR+ E +I GRV+++ +IA +G V + + +DG + + E Sbjct: 1 MRLQQFLARAGVASRRKAEDLIREGRVTINDQIAGIGSSV--SESDVVCLDGERVRLPEK 58 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 V+A +KP G T++DP TV+ +P + VGRLD ++ GLLL T D Sbjct: 59 K----VVIALHKPVGVTTTKSDPHAERTVYQLVPDV--PGLHPVGRLDKDSEGLLLLTND 112 Query: 123 GELANRLMHPSREVEREYAVRV-FGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+L +L HP V + Y G+V +A R L GV L+DG A + + Sbjct: 113 GDLTLKLTHPRYGVRKVYRAWCKHGRVSEADCRRLVEGVALDDGLAQALEAEPTQEGA-- 170 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + EG+ REVRR+ +G V+RL+R++ G I L K L G W L + L+ Sbjct: 171 ---RIVMAEGKKREVRRMLGRLGYPVTRLVRLQVGPIKLGK-LNPGEWRYLTPEEIGLLQ 226 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGR 282 L P A K + + + RA+K S+ GR Sbjct: 227 GQKPLKPRKKEGWAKAKPAKFAQQREESRAIKPPSRTEQGR 267 >UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1D5Q2_MYXXD Length = 745 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 99/268 (36%), Positives = 139/268 (51%), Gaps = 8/268 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVR 60 +E+LQK LARAG SRR E +I AGRV+V+ K + +LG RVE + +DG L++ Sbjct: 3 AERLQKYLARAGVASRRHAEELITAGRVAVNNKTVTELGSRVEPG-TDLVTVDGTLVTPP 61 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + YKP G + T +DP+GRPTV + + + G R VGRLD + G LLFT Sbjct: 62 DESS----YFLLYKPVGVVTTLSDPQGRPTVANYV-EETGKRLFPVGRLDYDAEGALLFT 116 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG LA++L HPS +V R Y +V G D A L L GV+LEDG A ++ Sbjct: 117 DDGALAHKLTHPSFQVPRTYLAKVKGAPDTATLDKLRGGVRLEDGMATPVSVSVFEAAER 176 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N W + + EGR ++RL AVG V RL R Y + + +GL G L ++ L Sbjct: 177 NTWLKIVVAEGRPHLIKRLCAAVGHPVVRLFRPSYAGVGV-EGLRPGELRPLKTSEVELL 235 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQI 268 + + + RR +A Sbjct: 236 NAVSDGKAAPPTGELRLPPRRHGRAAPG 263 >UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepID=A2RP35_LACLM Length = 328 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 72/248 (29%), Positives = 117/248 (47%), Gaps = 14/248 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K LA +G GSR E++ +++ GRV+V G+I + G ++ DG ++ Sbjct: 87 MRLDKFLAESGLGSRSEVKVLLKKGRVTVAGEIQRDGRFQVDKNSRQVAFDGQILDY--- 143 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKL-RGARWIAVGRLDVNTCGLLLFTT 121 Q KP+G + D TV L + VGRLD NT GLL+ T Sbjct: 144 --QEYYYYLLNKPQGVVSATKD-NVFKTVVQLLSEKDFRKDIFPVGRLDKNTEGLLILTN 200 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGEGI 180 DG L + L P + VE+EY R+ G+V D + + G+ L++G A + Sbjct: 201 DGALGHDLTQPKKHVEKEYFARIDGKVTDEIINKFAEGLTLKNGEKARPGELFVEKTYKG 260 Query: 181 N------QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDL 234 + V + EG+ +V+R++EAV + V L R+R G++ L L G + L + Sbjct: 261 DSQSGWVSEIRVIIHEGKFHQVKRMFEAVEMYVLYLKRIRMGNLALDSDLALGAYRPLTI 320 Query: 235 AQTNYLRE 242 + L++ Sbjct: 321 EEIENLKK 328 >UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1F236_ACIC5 Length = 406 Score = 267 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 94/282 (33%), Positives = 138/282 (48%), Gaps = 18/282 (6%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQK+LA AG SRR+ E +I AGRV V+G++ IR+DG L+ E Sbjct: 24 ERLQKILASAGVASRRKAEELILAGRVQVNGQVVTEMGFKADAASDHIRVDGKLLQGPEK 83 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRG--ARWIAVGRLDVNTCGLLLFT 120 R KP+G + T +DPEGR TV + R VGRLD + GLLL T Sbjct: 84 L----RYFMLNKPKGYVTTVSDPEGRHTVMEFFHGRGKGGERLYPVGRLDYASEGLLLMT 139 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGP-------AAFKTIK 173 DG LAN L S VE+ Y V+V G+ + +L + G+ ++ G A ++ Sbjct: 140 NDGALANTLTKASSHVEKVYLVKVSGRPTEEQLEQIRAGIMIDRGRPGEGRVMTAPAGVR 199 Query: 174 FSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELD 233 + N W+ +TL EGRNRE+R+++E G V ++ R+ YG + L + G EL+ Sbjct: 200 MVR-DAENPWFELTLIEGRNREIRKMFEETGHFVEKIRRIGYGPLVL--DVEPGEVRELN 256 Query: 234 LAQTNYLRELVELPPETSSKVAVEKDRRR--MKANQIRRAVK 273 + + LR + K A + R KA R++ Sbjct: 257 PEEVDSLRRAAQRKRAPKPKAATKTKRLTMLPKAKPARKSAT 298 >UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C4P7_9PLAN Length = 352 Score = 267 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 104/288 (36%), Positives = 142/288 (49%), Gaps = 10/288 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK LA G GSRR E IE GRVSVDG + I +DG + + Sbjct: 23 IRLQKFLAATGLGSRRHCEEYIETGRVSVDGDVITELGAKIDPETQFIEVDGERVRL--- 79 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 Q R KP G LCT NDP GR V D P G R VGRLD N+ GL+L T D Sbjct: 80 --QPRRYYLLNKPSGFLCTNNDPAGRRRVVDLFP-NDGQRLFTVGRLDENSEGLILVTND 136 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA RL HP V R Y V+V G KL +L +GV+ ++G +K+ +G + Sbjct: 137 GELAQRLAHPRYRVARTYHVQVVGNPPREKLDELRKGVRFKEGVFRVSGLKYLKKQGKSA 196 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + +TL EG+NRE+RR+ +G +V +L+R+R+G + L K L G L + LR+ Sbjct: 197 FLELTLHEGQNREIRRMMARIGHKVIQLVRIRFGPLNLGK-LKTGESRRLSDTELKKLRQ 255 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNN 290 L+ E S + ++ A RA ++ G R + Sbjct: 256 LL---NEKHSPDIRHRKGKKNAAPAKTRAPRKSVGKRSGERGAAAGKS 300 >UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales RepID=B4U4Q4_STREM Length = 266 Score = 266 bits (681), Expect = 6e-70, Method: Composition-based stats. Identities = 75/248 (30%), Positives = 125/248 (50%), Gaps = 10/248 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A AG SRR+ E +I+ G V+++G++ V G + I+G I E Sbjct: 27 MRINKYIAHAGVASRRKAEELIKRGLVTLNGQVVTD-LATTVKSGDLVEIEGSPIYNEEK 85 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 KP G + + +D +GR TV D LP++ R VGRLD +T GLL+ T D Sbjct: 86 -----VYYLLNKPRGVISSVSDDKGRQTVIDLLPQV-KERIYPVGRLDWDTSGLLILTND 139 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSG--GEGI 180 G+ ++++HP E+++ Y RV G V LR L+RGV ++ + + Sbjct: 140 GDFTDKMIHPRNEIDKVYLARVKGVVTKESLRPLTRGVVIDGKKTKPARYRIIRVEPDKN 199 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +T+ EGR+ +V++++EAVG V +L R ++G + + +GL G L + + L Sbjct: 200 RSIVELTIHEGRHHQVKKMFEAVGHLVDKLSRTQFGSLDV-RGLKPGEARRLSKKEVSQL 258 Query: 241 RELVELPP 248 L Sbjct: 259 HHLASTRK 266 >UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID=Q6G8H4_STAAS Length = 231 Score = 266 bits (680), Expect = 7e-70, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 10/238 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K LA G G+R E++ +++ G V+V+ ++ K KI + G LI E+ Sbjct: 1 MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIEN 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP+ + D TV D +P+ + VGRLD +T GLLL T D Sbjct: 61 -----VYIMLNKPKDYISATED-HHSKTVIDLIPEYQHLNIFTVGRLDKDTEGLLLITND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+ + LM P++ V ++Y V + + ++ GV L DG + + + + Sbjct: 115 GDFNHELMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLSDGKVKPAILTYIDNQTSH- 173 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 VT+ EG+ +V+R++ ++ +V L R++ D+ L L G + L + L Sbjct: 174 ---VTIYEGKYHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKL 228 >UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0N6F1_9FIRM Length = 241 Score = 265 bits (679), Expect = 9e-70, Method: Composition-based stats. Identities = 87/249 (34%), Positives = 131/249 (52%), Gaps = 12/249 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRE 61 E+LQK +A +G+ SRR+ E +I G+V V+GK+ LG +V+ G I ++G + Sbjct: 2 ERLQKAIAASGYTSRRKAEDLIVQGKVEVNGKVVTELGTKVK--QGDLITVEGKPL---- 55 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + +YKP+G +CT +D RP + D ++ R VGRLD +T GL++ + Sbjct: 56 -VGENKVYYVFYKPKGCVCTLDDEFDRPIITDYFTEV-KERIYPVGRLDFDTTGLIIMSN 113 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGG--EG 179 DGE AN +MHP +E+ Y V + G + L L +GV LE IK E Sbjct: 114 DGEFANMIMHPRSHLEKIYEVSIKGLITGPTLNKLEKGVYLEGVKTLPCKIKVVDKDTEH 173 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + L EG+NR+V++++E+VG V RL RV G I L KGL G + L + Sbjct: 174 KTTMLKIKLVEGKNRQVKKMFESVGHPVKRLHRVSIGGINL-KGLTPGRYRILKPQEVKD 232 Query: 240 LRELVELPP 248 L++LV Sbjct: 233 LKKLVNTDK 241 >UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5V220_ROSS1 Length = 624 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 97/279 (34%), Positives = 137/279 (49%), Gaps = 7/279 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +E+LQKVLA AG SRR+ E I AGRV V+GK+ ++ +I +DG I Sbjct: 3 AERLQKVLASAGIASRRDCEEYIAAGRVMVNGKVVRIPGTRVDPEHDEILVDGRPIGKIH 62 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + +KP G + T +DP+GRPTV D + R VGRLD ++ GLLL T Sbjct: 63 HRT----YVMLHKPAGVVSTTDDPQGRPTVIDLV--NLEQRLFPVGRLDYDSEGLLLLTD 116 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGEL +L HPS +VE+EY V + A LR GV+L+ A ++ Sbjct: 117 DGELTQKLTHPSYQVEKEYRVLLNEAPSPAALRAWRTGVELDGVKTAPAWVELIERTPDG 176 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W V L EGR R++R + +G +V RLIRVR G + L LP G W L + + LR Sbjct: 177 AWVRVILHEGRKRQIREVARVLGYEVRRLIRVREGPLTLG-DLPSGTWRFLTDEEVDMLR 235 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSG 280 E E + + + R ++R + + Sbjct: 236 EHAERNAAVAEAEQPRRREQGETQVSGGRRLRRITPSAR 274 >UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3ESK0_9BACT Length = 616 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 90/279 (32%), Positives = 138/279 (49%), Gaps = 8/279 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK+LA G SRR E +I G V V+G + + ++ +DG + Sbjct: 18 IRLQKLLAHRGLASRRNAEEMIRGGLVKVNGIVVTVPGTKVHPETDRVTVDGKTV----P 73 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E + +YKP+G + T +DP+ + T+ D P++ I VGRLD+ + G+LL T + Sbjct: 74 VEPEPFLFLFYKPKGIVSTLHDPDEKTTLKDFFPQINP--LIHVGRLDIQSEGVLLLTNN 131 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG-VQLEDGPAAFKTIKFSGGEGIN 181 G+LA R++HP E+ R Y V+V G V L L G V+L+ P ++ N Sbjct: 132 GDLAQRILHPRYEIPRTYLVKVQGVVKPEHLDRLRSGKVRLDGRPVQPLELEQERLTETN 191 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 WY +TLTEGRNREVRRL++A+ V +L R+ +G++ L GL G + + + L Sbjct: 192 SWYRITLTEGRNREVRRLFDALHYFVLKLTRIAFGNLDLA-GLEPGEYRLVTPEEIALLL 250 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSG 280 + S R+ A +RHS S Sbjct: 251 SGARWKRKESIPPPERSPRKPNPATPSSPDFRRHSFRSR 289 >UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae RepID=A0JV58_ARTS2 Length = 406 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 98/244 (40%), Positives = 127/244 (52%), Gaps = 5/244 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQKV+A AG SRR E +I GRV VDGK+ I +DG I + Sbjct: 168 IRLQKVMASAGVASRRVCEEMISEGRVEVDGKVVTELGVRVDPKTAVIHVDGLRIQL--- 224 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 ++ + + KP+G + T DP+GRP + D + G R VGRLDV T GLLL T D Sbjct: 225 -DENMVYMVFNKPKGVVSTMEDPDGRPCISDFVRNTHGERLFHVGRLDVATEGLLLLTND 283 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRL HPS EV + Y V+V G L GV+LEDG A+ + K + Sbjct: 284 GELANRLTHPSYEVPKTYLVQVRGPFPQGIGAQLKAGVELEDGMASVDSFKLVDSTPGHV 343 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 V L G+NR VRRL++AVG V RL+RV+ G I L +G L + +L Sbjct: 344 LIEVVLHSGKNRIVRRLFDAVGFPVLRLVRVKVGPIGLG-DQRQGSIRNLGKQEVGHLLA 402 Query: 243 LVEL 246 V L Sbjct: 403 SVGL 406 >UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQL4_9PLAN Length = 517 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 100/314 (31%), Positives = 148/314 (47%), Gaps = 34/314 (10%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRE 61 E+L KVLA AG SRR+ E++I+ GRV VDGK + +LG +V+ +I +DG + + Sbjct: 17 ERLHKVLAFAGIDSRRKCEALIQEGRVEVDGKFVTELGMKVDP-EHQEILVDGQRLKFGK 75 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 KP G L T DP GR V D +P+ R +GRLD + GL++ T Sbjct: 76 R-----VYYMLNKPPGVLSTNFDPAGRTRVIDMVPQDV--RLFTIGRLDRASEGLIVVTN 128 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGELANRL HP E+E+ Y V V G + + + RGV L +G ++ + Sbjct: 129 DGELANRLAHPRYEIEKTYRVEVAGHPEPDAITFVRRGVHLAEGFVQPVSVVMKRKNKQS 188 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 V L EG+NRE+RRL +G +V RL R+ G + L + +P G + EL A+T LR Sbjct: 189 TTLEVILDEGKNREIRRLMAKIGHKVLRLKRIAMGPLRLGE-MPEGAFRELKSAETKALR 247 Query: 242 ELV------------------------ELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQ 277 + + PET + + + RA + + Sbjct: 248 DAAFGVGAGKPKKPKPRKSSTPGEREGPIFPETKTIAKGRAGAKPTETGAKSRATGKPTG 307 Query: 278 VSGGRRSGGRNNNG 291 + RS + + G Sbjct: 308 AASKDRSTYKKSAG 321 >UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A4J9G8_DESRM Length = 249 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 120/249 (48%), Gaps = 13/249 (5%) Query: 1 MSE----KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHL 56 M+E +L ++L G G+R+EI+ +I+A +V V+G++A I + G + Sbjct: 1 MAENEKLRLDRLLNHMGLGTRKEIKKLIKAKQVMVNGELAMDPGLHIFPQRDHIEVQGEV 60 Query: 57 ISVRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL-PKLRGARWIAVGRLDVNTCG 115 I RE L KP+ L D V D L P VGRLD +T G Sbjct: 61 IEYRE-----YIYLMLNKPQDVLSATEDASD-KVVIDLLDPTYHSFNPFPVGRLDKDTEG 114 Query: 116 LLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKF 174 LLL T +G+LA++L+ P + V + Y V G V + + +RGV+L+DG +K Sbjct: 115 LLLLTNNGKLAHQLLSPKKHVPKTYYALVQGLVTEEDVAAFARGVELDDGYRTLPGQLKI 174 Query: 175 SGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDL 234 +T+ EG+ +V+R++EAVG +V L R+ G + L L G + EL Sbjct: 175 IR-SAPQSEIELTIYEGKYHQVKRMFEAVGKRVIYLKRLSMGPLVLDNNLKPGEYRELTD 233 Query: 235 AQTNYLREL 243 + L+E Sbjct: 234 EEIALLQEA 242 >UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSY4_SYNAS Length = 251 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 91/262 (34%), Positives = 137/262 (52%), Gaps = 11/262 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M E+LQK+LAR+G SRR+ E +I GRVSV+ +I + +IR+DG LI Sbjct: 1 MEERLQKILARSGVASRRKAEEMIREGRVSVNSEIVRELGSKADIERDEIRVDGKLIC-- 58 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 AE+ + KP G + +DP+ RP V LP+L R VGRLD ++ GLLL T Sbjct: 59 --AEETKVYVMLNKPRGYVTALSDPQKRPLVIHLLPELGV-RLFPVGRLDYDSEGLLLLT 115 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG A R+ HP + + Y V++ G+++ A+ L +G++LEDG A + Sbjct: 116 NDGGFAQRVQHPRYRISKTYRVKISGRLNAAEFNRLQKGLELEDGKFAPDEVALEEINPK 175 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + W + ++EGRNR +RR +E +G +V RLIR D+ L L G + L + L Sbjct: 176 SSWLTMKISEGRNRVIRRAFEQLGHEVLRLIRTAVADLHLG-NLREGDYRLLKGWEVQQL 234 Query: 241 RELVELPPETSSKVAVEKDRRR 262 L P S + ++ + Sbjct: 235 -----LTPRKRSGSKILPEKEK 251 >UniRef50_B6BUN1 Pseudouridine synthase n=1 Tax=beta proteobacterium KB13 RepID=B6BUN1_9PROT Length = 257 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 107/245 (43%), Positives = 167/245 (68%), Gaps = 2/245 (0%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 E++QK LA G GSRR IE +I+ +++V+ K LG V I I+G I + Sbjct: 14 KERIQKFLANMGMGSRRSIEELIKQKKITVNQKPIDLGHMVYGNE--IIHINGRRIYFKN 71 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + ++ R++ Y+KPEGE+ + +DP+ + TVF +LPK++ +WI++GRLD+NT GLLL T Sbjct: 72 AEKRESRLIIYHKPEGEIVSHSDPKHQKTVFQKLPKVKNGKWISIGRLDINTSGLLLITN 131 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+LAN +MHPS++++REY+VR+ G+V + + ++ +GV+L+DG A T + +GGEG N Sbjct: 132 DGKLANHMMHPSQQIDREYSVRILGEVTEEIINNIRKGVKLDDGVAHVDTFEHTGGEGAN 191 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 QW+ + L EGRNRE+RRL E+ ++VSRLIR RYG + LP L RG + EL+ + Sbjct: 192 QWFRIILKEGRNREIRRLVESQNLKVSRLIRTRYGPLNLPSHLKRGQFMELEKKNLEKIF 251 Query: 242 ELVEL 246 +++ + Sbjct: 252 KMLGM 256 >UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGQ8_EGGLE Length = 282 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 90/278 (32%), Positives = 134/278 (48%), Gaps = 38/278 (13%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRE 61 +LQK LARAG SRR E+++ AGRV+V+GK+ LG +V+ ++ +DG ++ + Sbjct: 11 MRLQKFLARAGAASRRGSENLMTAGRVTVNGKVVTELGSKVDPL-VDEVAVDGAVVRL-- 67 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + +KP G + T +DP+GR TV + +P R +GRLD +T GLLLF+T Sbjct: 68 --ADGPVTIMLHKPAGFVTTMSDPQGRRTVAELVPTERYPGLFPIGRLDFDTTGLLLFST 125 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI- 180 DGEL N L+HP V + Y V G+ + L L RG++L+DGP ++ G Sbjct: 126 DGELGNGLLHPKHHVTKRYLACVEGRPTERDLALLRRGIELDDGPTQPADVRVVEGGAAR 185 Query: 181 ------------------------------NQWYNVTLTEGRNREVRRLWEAVGVQVSRL 210 + + EGR R+V+R+ AVG V L Sbjct: 186 HAERLLEIPAAVPPRSSKEYAAVCEGRATRRSIVRLGIREGRKRQVKRMLAAVGHPVLAL 245 Query: 211 IRVRYGDIPLPKGLPRGGWTELDLAQTNYLRELVELPP 248 R +G + L LPRG W LD + L + + Sbjct: 246 HRDSFGPLELG-DLPRGAWRALDAEEVAALHQAIGRAE 282 >UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y027_PEDHD Length = 472 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 77/243 (31%), Positives = 128/243 (52%), Gaps = 7/243 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + ++ +G SRR+ + +IEAG VSV+G++ ++R +G L+ + Sbjct: 237 IRLNRYISNSGICSRRKADELIEAGVVSVNGEVVSELGHKIDPVKDQVRYNGELLKREKK 296 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP+ + T +DP+ R TV + K R VGRLD NT GLLL T D Sbjct: 297 I-----YVLLNKPKDYITTTDDPQERRTVMQLVEKASRERIYPVGRLDRNTTGLLLMTND 351 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA++L HP + + Y V + + L + G++LEDG ++ + G G + Sbjct: 352 GDLADKLSHPKNGITKIYHVELSRSLSQGDLNKIQFGLELEDGIIKPDSVSYVTG-GSKR 410 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + G+NR VRR++E +G V +L RV YG++ K LPRG W L+ + ++ Sbjct: 411 EVGIQIHSGKNRIVRRIFEHLGYDVVKLDRVVYGNLT-KKDLPRGRWRYLEEHELIQIKH 469 Query: 243 LVE 245 L++ Sbjct: 470 LIK 472 >UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae RepID=Q7MMX9_VIBVY Length = 347 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 81/288 (28%), Positives = 139/288 (48%), Gaps = 16/288 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K ++ G SRRE + +IE GRV+++GK ++G +V PG + +DG + +A Sbjct: 8 RLNKYISETGFCSRREADKLIEQGRVTINGKQPEMGTKV--LPGDDVCVDGKPV----AA 61 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 ++ +A KP G CT + + D + R +GRLD + GL+ T DG Sbjct: 62 KEKPVYIALNKPTGITCTT-ERNIPGNIVDFIG--HKKRIFPIGRLDKPSDGLIFLTNDG 118 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 ++ N+++ E+EY VRV + ++ +S GV + D + Sbjct: 119 DIVNKILRAGNHHEKEYVVRVDKPITPEFIKAMSSGVNILDTVTLPCKVTQETKFS---- 174 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 + + LT+G NR++RR+ EA+G +V +L RVR +I L G+P G W L + + + Sbjct: 175 FRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNISLD-GIPNGKWRYLTDDEVTEILAM 233 Query: 244 VELP--PETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNN 289 E E +S+V + R R + + +Q S RR+ + Sbjct: 234 CEGSVGTEEASRVDAKGRRIRKATDAKLFDSREENQTSTARRNQKQRT 281 >UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXU0_DYAFD Length = 555 Score = 263 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 119/243 (48%), Gaps = 9/243 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +L + +A AG SRRE + +I +G++SV+GKI +V P ++ ++ + Sbjct: 322 EIRLNRYIANAGICSRREADDLISSGQISVNGKIVTE-MGYKVRPTDVVKYGKKALNPEK 380 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + KP+ + T +DPE R TV D + R VGRLD NT GLLL T Sbjct: 381 -----MVYILINKPKDYITTTDDPEERKTVLDIIAGACSERVYPVGRLDRNTTGLLLLTN 435 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGELA +L HPS +++ Y + + L GV+LEDG + Sbjct: 436 DGELAEKLTHPSSGIKKIYQAELDKPITTEDFEQLKAGVELEDGFIRPDEVGLV--TPDA 493 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 Q + + GRNR VRR++E +G +V +L R + + K LPRG W L + L+ Sbjct: 494 QVVGLEIHSGRNRIVRRMFEHLGYEVQKLDRTVFAGLN-KKDLPRGKWRFLTEKEVIKLK 552 Query: 242 ELV 244 L+ Sbjct: 553 FLL 555 >UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=B1C6T1_9FIRM Length = 238 Score = 263 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 116/241 (48%), Gaps = 6/241 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 ++ K LA G SRR+ E II G+V+V+G++ + + +++ G +S+ Sbjct: 4 KMRINKYLASCGVASRRKCEEIISRGKVTVNGEVVRELGTIINVEKDLVKVYGKEVSLDT 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 KP+G + G TV D L K R VGRLD +T GL++ T Sbjct: 64 KK----VYYMLNKPQGVISASKSKYGEETVVDLLGKKEH-RLFPVGRLDKDTTGLIILTN 118 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+ A +L HP E E+ Y V G+VD L L +GV ++ + ++ G+N Sbjct: 119 DGDFAYKLTHPKYEKEKTYEALVKGKVDSKSLDKLKQGVVIDGKKTSRAKVRLVKMIGVN 178 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +TL EGR R+V+++ E VG +V +L R + L L G + +L + + L Sbjct: 179 SLVEITLIEGRKRQVKKMCEKVGHKVIKLNRTMENGLSLG-DLEIGEYRKLTKNEVSKLL 237 Query: 242 E 242 + Sbjct: 238 K 238 >UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZE67_PLALI Length = 554 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 98/285 (34%), Positives = 139/285 (48%), Gaps = 7/285 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKVLA AG+GSRR E IE GRV++DG +AK K+ +DG + V E Sbjct: 37 ERLQKVLASAGYGSRRACEEYIEMGRVTIDGVVAKELGVRVDLSRQKVAVDGEKLRVEEK 96 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R ++KP G LCT +DP GR V D P G R VGRLD T GLL+ T D Sbjct: 97 -----RYFLFHKPAGVLCTNSDPAGRTRVIDCFPPNVG-RLFTVGRLDDGTEGLLIVTND 150 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA RL HP + R Y V G + L G+ +G ++ +G Sbjct: 151 GDLAERLTHPKFGIPRIYRAVVAGNPSTEAINQLLEGLYFAEGRFRMSSVNRVKSQGSAT 210 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 +T+ EG+NRE+RRL VG +V +L R +G I L L RG +L + + L++ Sbjct: 211 VLEITMREGQNREIRRLLARVGHKVMKLKRTHFGPIKLG-DLERGAHRKLSEEELSKLQD 269 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGR 287 ++ + + ++ R KA + S +G + R Sbjct: 270 VITGKWKEPAPRKPQRTRDAGKATSAGGVTRASSSRAGSAGATPR 314 >UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q01SF5_SOLUE Length = 249 Score = 263 bits (673), Expect = 5e-69, Method: Composition-based stats. Identities = 87/253 (34%), Positives = 127/253 (50%), Gaps = 7/253 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 E+LQK+L++AG SRR+ E +++ GRV+V+G + I++DG L+ + Sbjct: 3 EERLQKILSQAGVSSRRQAEKLMQEGRVTVNGSVITELGSKADLDRDHIKVDGRLLKAPK 62 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 +A KP+G + T +DPEGR TV D L R VGRLD ++ GLLL T Sbjct: 63 HQ----IYIALNKPKGTVTTVHDPEGRETVMDLL-HRVKERVYPVGRLDYHSEGLLLLTN 117 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGELAN +M + +E+ Y V+V G + + GV L +K N Sbjct: 118 DGELANSIMSAATHLEKTYVVKVTGTLTAEQEEKFRTGVPLSGRRTLPAGLKLLSR-AEN 176 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 WY V LTEGRN ++R ++ G V +L RVR G I L L G + LD L+ Sbjct: 177 PWYEVKLTEGRNNQIRMMFRHFGKLVEKLKRVRIGPIELG-TLKTGAFRYLDEEDVAKLK 235 Query: 242 ELVELPPETSSKV 254 ++ + +K Sbjct: 236 RAIQRSSQKPAKK 248 >UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium RepID=A5TWE7_FUSNP Length = 234 Score = 263 bits (672), Expect = 6e-69, Method: Composition-based stats. Identities = 78/241 (32%), Positives = 124/241 (51%), Gaps = 7/241 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K L+ G SRR I+ IE GR++V+G A G +++ I IDG I + Sbjct: 1 MRINKFLSTLGIASRRAIDKYIEEGRITVNGNTATTG--MDINENDNIFIDGKKIKTSIN 58 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E+ KP L + +D GR TV D + R +GRLD T GL+L T D Sbjct: 59 EEK--VYFMLNKPLEVLSSSSDDRGRKTVVDLIK--TDKRIFPIGRLDYMTSGLILLTND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GEL NR++HP E+ ++Y +++ G++ ++ +L +GV L+DG I + Sbjct: 115 GELFNRVVHPKSEIYKKYYIKILGELKKEEIDELKKGVLLDDGKTLPAKISGIKYDKNKT 174 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 +++ EGRNR++RR+ E +V L R + G++ L LP G + EL + YL Sbjct: 175 SMFISIREGRNRQIRRMIEKFEYKVLMLRREKIGELALG-DLPEGKYRELTKQEVEYLYS 233 Query: 243 L 243 + Sbjct: 234 I 234 >UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLU4_9FIRM Length = 230 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 78/241 (32%), Positives = 123/241 (51%), Gaps = 11/241 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A +G+ SRR + ++E G+V V+GK+A G ++++ ++ ++G I Sbjct: 1 MRINKFIANSGYCSRRNADLLLEQGKVFVNGKLATKG--IDISENDEVLVEGKKI----K 54 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E+ + KP G T V D + R VGRLD ++ GLLL T D Sbjct: 55 LEEAKKYYLLNKPIGYSSTAKAQFQEKIVLDLID--SKERIYPVGRLDKDSFGLLLLTND 112 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA RL HPS VE+EY V+V + ++ L+ LS G+ LE + + Sbjct: 113 GDLAFRLTHPSHNVEKEYIVKVDKTLKESDLKKLSSGIMLEGKITRKARFEMLDFKSN-- 170 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 V L EGRNR++R++++ + V L R+ +G I L K L G + EL + YLR Sbjct: 171 IVKVFLKEGRNRQIRKMFKTLDYNVISLERIAFGKIKLGK-LKVGNYRELSKEEIEYLRS 229 Query: 243 L 243 L Sbjct: 230 L 230 >UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6G3_MAGSM Length = 332 Score = 262 bits (671), Expect = 8e-69, Method: Composition-based stats. Identities = 105/261 (40%), Positives = 159/261 (60%), Gaps = 8/261 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + +LQK LA G SRRE E I+ GRVS++G++ V+V ++ +DG L++ + Sbjct: 69 APRLQKWLAEQGLCSRREGEVWIQEGRVSINGEVVTE-LGVKVAKRDRVAVDGQLVTPQR 127 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 S + + +KP+ +CTR+DP+GR T+FD + +R I VGRLD+N+ GL++ T+ Sbjct: 128 SRDTA---IILHKPKSIICTRSDPQGRRTIFDLIENHGSSRLITVGRLDINSEGLIILTS 184 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSR-GVQLEDGPAAFKTIKFS--GGE 178 DG+LA+ LMHPSREV R Y V+ G + ++L + GV+LEDGP I + Sbjct: 185 DGQLAHGLMHPSREVPRVYRVKTHGILLASQLEQIRTVGVRLEDGPTGPLEIVLDRGREQ 244 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 G N WY +TL EGRNREVRR+++ G+QV+RL+RV YG I L L G W + + + N Sbjct: 245 GNNSWYTITLREGRNREVRRIFDHFGLQVARLLRVGYGGISLG-NLEPGAWRPVTVDEWN 303 Query: 239 YLRELVELPPETSSKVAVEKD 259 L+++ + P S A+ + Sbjct: 304 MLQKISKRPIPGESAQAIPER 324 >UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3E8_9ACTO Length = 325 Score = 262 bits (671), Expect = 8e-69, Method: Composition-based stats. Identities = 98/255 (38%), Positives = 130/255 (50%), Gaps = 16/255 (6%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKVLA AG SRR E II AGRVSVDG + +IR+DG + Sbjct: 76 ERLQKVLAHAGVASRRACEEIIAAGRVSVDGVVVTEPGVRVDPSRQEIRVDGSRV----L 131 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDR-----------LPKLRGARWIAVGRLDV 111 + + +KP G + T DP+GRPTV D L R + VGRLD Sbjct: 132 TDPDVITVLLHKPAGVVTTMEDPQGRPTVADLAEQFISEHRTELEHPESVRLVHVGRLDT 191 Query: 112 NTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKT 171 T GLLL + DG+LA+RLMHPS E+ + Y V GQV+ R L RG++L+DG A Sbjct: 192 ETEGLLLLSNDGDLAHRLMHPSFEISKTYVAIVEGQVEGWVPRKLRRGIELDDGLAQADR 251 Query: 172 IKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTE 231 + +TL G+NR VRR+ +AVG V+RL R + G + + GL G Sbjct: 252 VVVKDAGPSGSIVEITLHSGKNRIVRRMLDAVGHPVTRLARTKLGPLGIG-GLRPGQMRR 310 Query: 232 LDLAQTNYLRELVEL 246 L + L++ V L Sbjct: 311 LTGEEITALQQEVGL 325 >UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A3CPQ5_STRSV Length = 242 Score = 262 bits (671), Expect = 8e-69, Method: Composition-based stats. Identities = 75/250 (30%), Positives = 131/250 (52%), Gaps = 10/250 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A AG SRR+ E +I G+VS++G++ + V G ++ ++G I E Sbjct: 1 MRINKYIAHAGIASRRKAEELIRQGKVSINGQVVRE-LATNVKSGDRVEVEGQPIYNEEK 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 KP G + + +D +GR TV + LP++ R VGRLD +T G+L+ T D Sbjct: 60 -----VYYLLNKPRGVISSVSDDKGRKTVVELLPQV-KERIYPVGRLDWDTSGILILTND 113 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN- 181 G+ + ++HP E+++ Y RV G + LR L+RG+++E + + Sbjct: 114 GDFTDEMIHPRNEIDKVYVARVKGLANKEVLRPLTRGIEIEGRKTKPAVYEIIKVDPAKN 173 Query: 182 -QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +T+ EGRN +V+++++AVG+QV +L R R+G + L GL G + +L + + L Sbjct: 174 RSVVQLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGHLDL-TGLKPGEYRKLSKKEVSQL 232 Query: 241 RELVELPPET 250 L + Sbjct: 233 HTLAVTKTKK 242 >UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium RepID=C8NNL7_COREF Length = 329 Score = 262 bits (671), Expect = 9e-69, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 125/246 (50%), Gaps = 7/246 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQKVLA+AG SRR E +I+ GRV V+G+I IR+DG I++ E Sbjct: 89 IRLQKVLAQAGVASRRHAEILIDNGRVEVNGRIVTTQGTRVNPNSDVIRVDGVRININED 148 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLLFT 120 E KP G T +D GRP V D + + G R VGRLD +T GLLL T Sbjct: 149 LE----YFVLNKPRGMHSTMSDDLGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLT 204 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELANRLMHP EV + Y V G+ + L +G++LEDGPA ++ Sbjct: 205 NDGELANRLMHPKYEVRKTYLATVRGEAGPNLVTTLRKGIELEDGPAKADYVQIIDTFQG 264 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + EGR VRR+ + G V RL+R + + L + G L+ ++ L Sbjct: 265 KSLIRLEIHEGRKHIVRRMLDEAGFPVERLVRTKLHTVQLGEQ-KPGSLRALNASELASL 323 Query: 241 RELVEL 246 ++VEL Sbjct: 324 YKVVEL 329 >UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae RepID=Q1GFA6_SILST Length = 422 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 99/286 (34%), Positives = 145/286 (50%), Gaps = 11/286 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ KVL+RAG SRRE E +I GRV+V+GK+ + VT +I +DG+ + Sbjct: 63 RIAKVLSRAGVASRREAERMIAEGRVAVNGKVI-DSPALNVTNLDRIVVDGNPL----PE 117 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + R+ YYKP G + T +D +GR T+FD LP+ R + VGRLD+N+ GLLL T DG Sbjct: 118 AEAPRLWLYYKPNGLVTTTSDEKGRKTIFDALPE-DLPRVMTVGRLDLNSEGLLLLTNDG 176 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 + +L PS R Y VR+ G+ D + L +GV ++ TI +G N W Sbjct: 177 GVKRQLELPSTGWLRRYRVRINGRPQDHEFDVLRKGVVIDGERFQPMTISLDRQQGANAW 236 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 + L EG+NRE+RR E VG V+RL+R+ YG L L G EL +R+ Sbjct: 237 LTIGLREGKNREIRRAMEEVGYPVNRLLRISYGPFQLG-TLKEGEVEELRP---RVVRDQ 292 Query: 244 VELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQV-SGGRRSGGRN 288 + L A +K R + + A + + R G+ Sbjct: 293 LGLAAPEGDGEAKKKPTRPGRGPRNPGAKTAGKGIGAPNARPTGKG 338 >UniRef50_B9ZS86 Pseudouridine synthase n=2 Tax=Chromatiales RepID=B9ZS86_9GAMM Length = 318 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 152/284 (53%), Positives = 190/284 (66%), Gaps = 6/284 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 MSE++QKVLA G GSRREIE IE G V V+ + AKLGD+V P IR+ G +I + Sbjct: 1 MSERVQKVLAARGLGSRREIEGWIERGEVKVNQRTAKLGDQV--GPNDVIRVRGRVIHMA 58 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E A R L Y+KP GE+C+R+DPEGR VF LP+L+G RW+AVGRLD+NT GLLLFT Sbjct: 59 EHAH---RWLVYHKPVGEICSRSDPEGRKPVFASLPRLKGQRWVAVGRLDLNTSGLLLFT 115 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDGELANRLMHPS +EREYAVRV G+V D R L GV+LEDGPA F ++ GG+G Sbjct: 116 TDGELANRLMHPSHSLEREYAVRVLGEVPDDTRRMLLEGVELEDGPARFDVLEERGGDGA 175 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N W++V ++EGRNR VRRLW+AVGV VSRLIRVRYG + L +GL G +L++ + L Sbjct: 176 NHWFHVVVSEGRNRLVRRLWDAVGVTVSRLIRVRYGPVVLGRGLKTGASRDLEVREVEAL 235 Query: 241 RELVELP-PETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRR 283 E VELP PE+ + + R + K +V R Sbjct: 236 YEAVELPVPESIRERGRRRGPGRNTRPARGKRGKSGGRVREADR 279 >UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A n=156 Tax=Gammaproteobacteria RepID=RSUA_ECO57 Length = 231 Score = 262 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 109/239 (45%), Gaps = 12/239 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A+ SR I RV+VDG+I + + + DG+ ++ + Sbjct: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQH- 58 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R KP+G +C+ +DP+ PTV L + + A GRLD++T GL+L T D Sbjct: 59 ---GPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDD 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGP--AAFKTIKFSGGEGI 180 G+ ++R+ P E+ Y V + V D ++GVQL + ++ Sbjct: 115 GQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--- 171 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +T++EGR +V+R++ AVG V L R R G I L L G + L + Sbjct: 172 -TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 >UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales RepID=Q47QM5_THEFY Length = 375 Score = 262 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 93/246 (37%), Positives = 124/246 (50%), Gaps = 7/246 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK LA+AG SRR E +I AGRVSVDG+I + +IR+DG + Sbjct: 135 IRLQKALAQAGVASRRACEELIAAGRVSVDGQIVRRFGARVDPEKSEIRVDGMRV----V 190 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRG--ARWIAVGRLDVNTCGLLLFT 120 Q R A KP G + T DPEGRPT+ D ++ R VGRLD +T GL+L T Sbjct: 191 TSQNLRYYALNKPRGVVSTMFDPEGRPTIGDYAAQIGPIEERLFHVGRLDTDTEGLILLT 250 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELANRL HP +V + Y +V G V +R + +GV+L+DG + + Sbjct: 251 NDGELANRLTHPRYKVTKTYLAKVPGPVPRDVIRQIRKGVELDDGFVKVDSFRVIDNIEP 310 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + L EGR VRRL +AVG VS L R + G + L L G L + + L Sbjct: 311 KALVEIRLHEGRKHIVRRLMKAVGHPVSDLARTQIGPVGL-NNLKSGTIRALTSQEVSEL 369 Query: 241 RELVEL 246 + Sbjct: 370 YTAAGM 375 >UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6I1_RUMHA Length = 271 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 86/286 (30%), Positives = 134/286 (46%), Gaps = 16/286 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ AG SRRE + +IE RV VDGK A G +VE +I++DG I Sbjct: 1 MRLNKYLSDAGVCSRREADRLIEEKRVLVDGKPAVQGMQVE--DFQEIKVDGKAI----K 54 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E+ +L ++KP+G CT N P + V + R GRLD ++ GLLL T Sbjct: 55 REEKKVLLVFHKPKGIECTAN-PNVKKNVISYI--NYPIRVYYAGRLDKDSEGLLLLTNQ 111 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GEL N++M E+EY V V V + L+ + GV + ++ + Sbjct: 112 GELVNQIMKAGSYHEKEYLVTVDKPVTEEFLQSMREGVPVLGTITRKCKVEKESEK---- 167 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + +TLT+G NR++RR+ +G +V +L R+R +I L LP G + E + + L+ Sbjct: 168 VFRITLTQGLNRQIRRMCNYLGYEVVKLKRIRIMNIELG-NLPIGSYREATKEELDELKR 226 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRN 288 + E + K ++ +K R R+ RN Sbjct: 227 QISEKAEKRQETDFHKGKKPVKNAGKYR--NPSKVRKQKRQEASRN 270 >UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales RepID=C6J9Y4_9FIRM Length = 323 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 82/288 (28%), Positives = 135/288 (46%), Gaps = 13/288 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 ++ K L+ AG SRRE + +IE GR++V+GK A+ G +V + +I D + Sbjct: 13 KIRINKYLSEAGICSRREADRMIEEGRITVNGKKAESGQKVSL--EDEICADNIPV---- 66 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + +L + KP G +C+ TV D L R VGRLD + GLLL T Sbjct: 67 HKNEKKVLLLFNKPRGIVCSTKQQFDETTVTDYLD--YPLRVYPVGRLDKESQGLLLLTN 124 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 +G+L N++M E+EY V V VD +R +S+GV + D + +G Sbjct: 125 EGDLVNKIMRAGNYHEKEYFVTVNKPVDREFVRRMSKGVPVLDTVTRPCRVVQTGE---- 180 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + LT+G NR++RR+ +G +V +L R+R ++ L G+ G + E+ + L Sbjct: 181 CSFRIILTQGLNRQIRRMCRYLGYEVQKLKRIRIMNLTLD-GIREGEYREITAQEWEELN 239 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNN 289 L+E + E++ R K G +G R++ Sbjct: 240 HLLESSTSETVIRTGEQNGNSSDHANERAGAKAGQGSKGVLPAGYRDH 287 >UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus RepID=Q38VQ0_LACSS Length = 239 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 69/247 (27%), Positives = 117/247 (47%), Gaps = 11/247 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ + L+ G+R+ ++ +++AGRV V K+ K + +VTP + +D I + + Sbjct: 1 MRIDRFLSHMNVGTRKTLKPLLKAGRVRVADKVIKE-AKYQVTPETVVYVDDEPIRYQTN 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL-PKLRGARWIAVGRLDVNTCGLLLFTT 121 KP G + DP+ TV D P VGRLD +T GLLL T Sbjct: 60 -----FYWLLNKPAGVISATTDPQ--KTVMDLFAPADYREDLFPVGRLDKDTTGLLLITN 112 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE--G 179 DG+LA+ L+ P + V + Y ++ G V A + G++L D A + + Sbjct: 113 DGDLAHDLLSPKKHVAKTYRAKIAGVVTAADQAQFAAGLKLRDFDAQPAQLTILRTDTAR 172 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 V + EG+ +V+R++ AVG +V L R++ G + LP L RG + L + + Sbjct: 173 QESLIEVEIHEGKFHQVKRMFHAVGKEVLTLERIKMGPLSLPADLKRGQYRALTTTEIDA 232 Query: 240 LRELVEL 246 L+ + Sbjct: 233 LQRATQK 239 >UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae RepID=A4BW35_9FLAO Length = 305 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 80/241 (33%), Positives = 123/241 (51%), Gaps = 8/241 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A +G SRRE ++ IE G V V+G + +V P +R DG I+ + Sbjct: 72 IRLNKYIANSGVCSRREADTYIEHGSVEVNGNLVTE-MGYKVQPDDVVRFDGTGITPEQK 130 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + + KP+ + T +D GR TV D + R VGRLD NT GLLLFT D Sbjct: 131 -----KYILLNKPKNYITTMDDDRGRKTVMDLISNATKERIYPVGRLDRNTTGLLLFTND 185 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA +L HP +V + Y + +++ L L V +E + + G+ Sbjct: 186 GELAKKLTHPKHDVRKLYHASLDKKLELKDLEKLRGEVLIEGKKVFIDAVSYVDGQPK-S 244 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + GRNR VR+++E +G +VS+L RV + ++ + LPRG W EL + + L+ Sbjct: 245 EVGIEIHSGRNRIVRKIFEHLGYKVSKLDRVIFAELT-KRNLPRGRWRELTNQELSNLQM 303 Query: 243 L 243 L Sbjct: 304 L 304 >UniRef50_A5CX60 Pseudouridine synthase n=1 Tax=Candidatus Vesicomyosocius okutanii HA RepID=A5CX60_VESOH Length = 241 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 122/245 (49%), Positives = 167/245 (68%), Gaps = 4/245 (1%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M+ +LQK++A AG+GSRR +E +IE GR+ V+ KIA +GD+ E+T ++IDG I++ Sbjct: 1 MANRLQKLIANAGYGSRRWVERLIEQGRIEVNNKIAIIGDKTEITSL--VKIDGRKINLS 58 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 EQ +V+ K G +C+ D +GR +V+ LPK +RWI VGRLD+NT GLLL T Sbjct: 59 RYVEQETKVIILNKQAGVICSNRDDKGRKSVYSLLPKE--SRWIMVGRLDLNTSGLLLVT 116 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 +G+LAN+LMHPS E++REYAVRV GQV + L+ L++GV +DG + F I FSGG+G Sbjct: 117 NNGDLANKLMHPSSEIDREYAVRVLGQVKNKDLKKLTQGVVFDDGFSKFNQITFSGGKGA 176 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+WY V L EG+ REVRRLWE +G +VSRLIR+R+G+I LP L + L Q L Sbjct: 177 NRWYKVVLREGKKREVRRLWEVLGFKVSRLIRIRFGEIRLPDNLKANQYDYLKTVQIKLL 236 Query: 241 RELVE 245 VE Sbjct: 237 FNAVE 241 >UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organisms RepID=A4CJ52_9FLAO Length = 303 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 121/241 (50%), Gaps = 8/241 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A AG SRRE ++ I AG V+V+GK +V P ++R DG L+ Sbjct: 70 IRLNKYIANAGICSRREADTYIAAGNVTVNGKTITE-MGYKVQPTDEVRFDGRLLQRERK 128 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP + T D +GR TV + + + AR + VGRLD NT GLLLFT D Sbjct: 129 E-----YVLLNKPRNFITTTRDEKGRRTVMELISRASNARLVPVGRLDRNTTGLLLFTND 183 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA +L HP V + Y V + A L L G++LEDG + G + Sbjct: 184 GELAKKLTHPKHGVRKIYHVELDKTFKSADLGKLREGLELEDGRIEVDEASYIDG-ASKK 242 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 V L GRNR VRR++E +G QV +L RV + K LPRG W L + LR Sbjct: 243 EVGVELHSGRNRIVRRIFEHLGYQVVKLDRVVLAGLT-KKDLPRGHWRHLTEQEVINLRM 301 Query: 243 L 243 + Sbjct: 302 I 302 >UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterineae RepID=A4QE19_CORGB Length = 320 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 123/246 (50%), Gaps = 7/246 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQKVLA+AG SRR E +I+ GRV V+ +I IR+DG I + E Sbjct: 80 VRLQKVLAQAGVASRRHAEILIDQGRVEVNDRIVTTQGVRVNPNNDVIRVDGVRIHINED 139 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLLFT 120 E KP G T +D GRP V D + + G R VGRLD +T GLLL T Sbjct: 140 LE----YFVLNKPRGMHSTMSDELGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLT 195 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELANRLMHP EV + Y V G+ + + L GV+LEDGPA + Sbjct: 196 NDGELANRLMHPKYEVSKTYLATVRGEATNKLVSALRDGVELEDGPAKADFAQIIDVFQG 255 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + EGR VRRL++ +G V RL+R + + L G L+ ++ L Sbjct: 256 KSLLRIEIHEGRKHIVRRLFDELGFPVERLVRTKLHTVQLG-DQKPGSLRALNSSELTSL 314 Query: 241 RELVEL 246 ++V+L Sbjct: 315 YKVVQL 320 >UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC52_THENN Length = 240 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 135/249 (54%), Gaps = 14/249 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + L+ G G+R+E+ ++I+ GRV+V+ + L +++ +++DG +I + E Sbjct: 1 MRLDRYLSNRGIGTRKEVRALIKHGRVTVNDRTV-LDPAYKLSDKDVVKVDGKVIDLPEK 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + +YKP G + + DP T+ + LP ++G VGRLD + GLLL T D Sbjct: 60 -----VYILFYKPAGYVTSTRDPHSE-TIMEFLPDIKG--IFPVGRLDKDAEGLLLVTND 111 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGEGIN 181 GE A+R++ P +VE+EY V+V G++ + KL L RGV L DG A K ++ N Sbjct: 112 GEFAHRVISPRWKVEKEYVVKVEGEITEDKLEKLRRGVSLRDGFFAKAKHVEKIS----N 167 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + +TEG+ +V+R+ AVG++ L RVR G + LP+ + G + L + + Sbjct: 168 DTVKIVITEGKYHQVKRMMAAVGLKTIHLKRVRIGGLRLPQEMKPGEYRFLSEEEVRQVF 227 Query: 242 ELVELPPET 250 E + + Sbjct: 228 EGNDQKEDR 236 >UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytoplasma RepID=Q2NIZ3_AYWBP Length = 245 Score = 260 bits (665), Expect = 5e-68, Method: Composition-based stats. Identities = 83/251 (33%), Positives = 128/251 (50%), Gaps = 13/251 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 61 ++LQKVLA A SRR+ E +I R+ V+GKI +LG +V + I +D I+ Sbjct: 2 QRLQKVLAYANVASRRKAEILILEKRIKVNGKIISELGTKV--SSSDIITLDDKPIT--- 56 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + KP G L T D + RPTV D + + R +GRLD NT GLLL T Sbjct: 57 --KATYSYFLLNKPNGFLSTAKDKKNRPTVLDLIEEASIQRLYPIGRLDFNTTGLLLITN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKT----IKFSGG 177 DG+L +L HPS + +EY V++ + L +G+ ++ A +K S Sbjct: 115 DGDLTQKLTHPSFCIPKEYHVKINACLQKKDLSTFCKGIIIDKKYLAVCKEIDILKISYM 174 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 + W + +TEG+NR+VR++ +A+G QV +L R RY + + + L G + L + + Sbjct: 175 PKPSTWLKLVITEGKNRQVRKMMQALGYQVLKLKRYRYSFLTI-ENLTIGAYRPLKIHEI 233 Query: 238 NYLRELVELPP 248 L+ L P Sbjct: 234 KKLKTLTTQIP 244 >UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIA1_RHOM4 Length = 268 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 95/251 (37%), Positives = 129/251 (51%), Gaps = 12/251 (4%) Query: 3 EKLQKVLARAGHG-SRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +L + LARAG SRR+ + +I +G+V V+G++A+LG RV P + ++G + Sbjct: 10 IRLNRYLARAGVCPSRRKADELIASGQVRVNGQVAQLGMRV--GPDDIVEVNGVRV---- 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDR--LPKLRGARWIAVGRLDVNTCGLLLF 119 + + KP + T +D GR TV D LP + VGRLD NT G+LL Sbjct: 64 VPQTQALYILMNKPHDTITTCDDERGRRTVLDLINLPPEQKNGLFPVGRLDRNTTGVLLL 123 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DGELANRLMHP VE+ Y R V + L RGVQLEDGPA + Sbjct: 124 TNDGELANRLMHPRYRVEKIYVARTARPVKPEEAEQLRRGVQLEDGPARAVQVAV--NPA 181 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + + EGRNR+VRR+ EA+G +V +L R Y + KG+ G W L A+ Sbjct: 182 DPHEIALMIYEGRNRQVRRMLEAIGHEVVQLKRTHYAGLT-TKGVRPGKWRRLTDAEVRR 240 Query: 240 LRELVELPPET 250 L L L P Sbjct: 241 LYRLAGLKPPK 251 >UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZI67_9SPHI Length = 391 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +L + ++ +G SRRE + +IE G +SV+GK+ +V+P ++ L+ Sbjct: 158 KMRLNRFISNSGVCSRREADKLIEMGMISVNGKVITE-MGFQVSPTDTVKYGKRLLK--- 213 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + + KP+ + T NDP+ R TV D + R VGRLD NT GLLLFT Sbjct: 214 --REKFVYVLLNKPKDFITTTNDPQDRKTVMDLIKNSCDERIYPVGRLDRNTTGLLLFTN 271 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGE+A +L HPS +V++ Y V + + D L ++ GV LEDG AA I E Sbjct: 272 DGEVAKKLSHPSHDVKKVYQVELDKPLKDEDLDSIAEGVILEDGYAAVDEIAILNPER-- 329 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 V + GRNR VRR++ + +V +L R Y + K + RG W L + L+ Sbjct: 330 TLVGVEIHIGRNRIVRRIFNHLDYEVVKLDRTMYAGLN-KKNIDRGDWRYLSEKEVIRLK 388 >UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UUP0_RHOBA Length = 395 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 86/284 (30%), Positives = 133/284 (46%), Gaps = 11/284 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ ++LA AG GSRR+ E +I GRV VDG+ K+R+DG+ + Sbjct: 26 RINQLLASAGFGSRRQCEELIREGRVDVDGETITELGTTVDPDLQKVRVDGNYLRP---- 81 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 Q KP G + T DP GRP V D +P R VGRLD+++ GL+L T DG Sbjct: 82 -QKLVYYVVNKPVGIVTTNRDPRGRPRVIDLVPPT--ERVFPVGRLDISSEGLILLTNDG 138 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 +LA +L HP +++ Y V V G+V ++ + G+ + +G K Sbjct: 139 DLAQKLAHPKFGIQKVYRVVVAGEVRGETMKKMREGIYIAEGLVQVDGAKIIKARTKATE 198 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 + L EG+NRE+RR+ G +V +L RV G + L +PRG + +L + + LR Sbjct: 199 MEIRLKEGKNREIRRILARFGHKVQQLRRVAIGPLKLG-DVPRGAYRKLTRDEVDKLRRS 257 Query: 244 VELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGR 287 ++ R I+R S+ + +GGR Sbjct: 258 ID---AAEKAAKTAPPARPASKQSIKRRPGGASRNVAAKGTGGR 298 >UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales RepID=C5WHE9_STRDG Length = 245 Score = 260 bits (664), Expect = 6e-68, Method: Composition-based stats. Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 11/244 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPG-LKIRIDGHLISV 59 M+ +L K L G GSR +++S+++ + V+ ++ + +V++ + G ++ Sbjct: 1 MTMRLDKFLVETGVGSRSQVKSLLKKKAILVNQEV-ETSPKVQINEHKDVVTYLGKPLTY 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLL 118 + KP G L D + TV D L + + VGRLD +T GLLL Sbjct: 60 -----EAFVYYILNKPAGFLSATKD-RAQATVIDLLDETARQKDVFPVGRLDKDTRGLLL 113 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T +G+LA+ L+ P + V +EY +V G + DA D ++G+ L+D ++ + Sbjct: 114 LTNNGQLAHDLLSPKKHVTKEYLAKVAGIMTDADKDDFAKGISLKDHQCLPAKLEVLDKD 173 Query: 179 --GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 ++T+ EG+ +V+R+ A G +V L R+ G + L GL G + L + Sbjct: 174 LSQETCVVSITIQEGKFHQVKRMVAACGKEVLELQRLSMGPLRLDPGLAEGDFRRLTSDE 233 Query: 237 TNYL 240 L Sbjct: 234 LQSL 237 >UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUC8_9FIRM Length = 243 Score = 259 bits (663), Expect = 6e-68, Method: Composition-based stats. Identities = 66/241 (27%), Positives = 113/241 (46%), Gaps = 9/241 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +++K LA G GSR++I+ ++ V+++ ++ G + + G L+ Sbjct: 1 MRIEKYLADTGWGSRKDIKQLLAQKIVTINDQVCSKGGTQVTPGSDCVAVGGQLV----- 55 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK-LRGARWIAVGRLDVNTCGLLLFTT 121 Q KPEG L D + TV D L + + VGRLD++T GLLL T Sbjct: 56 PYQRYHYYLLNKPEGILSATEDRHHQ-TVIDWLGEGYQHLDLFPVGRLDIDTTGLLLLTN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGG--EG 179 +G+LA++L+ P ++V++ Y + G VD A + G+ L D + + + Sbjct: 115 NGQLAHQLLSPKKKVDKTYTATIRGLVDQADIAAFEAGLDLGDFTSLPAELTVLSQDVDQ 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 V + EG+ +V+R+++AVG +V L R+ G + L L G W L + Sbjct: 175 GTSQIQVIIQEGKFHQVKRMFQAVGKEVLSLHRLAMGPLRLESDLAHGQWRSLTEQEAQA 234 Query: 240 L 240 L Sbjct: 235 L 235 >UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY40_9SPHI Length = 434 Score = 259 bits (663), Expect = 7e-68, Method: Composition-based stats. Identities = 75/238 (31%), Positives = 119/238 (50%), Gaps = 9/238 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K +A +G SRRE + +I G VSV+GK+ ++V+ ++ G I+ + Sbjct: 203 RLNKYIANSGICSRREADDLIAKGLVSVNGKVVTE-LGLKVSKFDRVVYQGKKINPEK-- 259 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + KP+ + T +DP R TV + R VGRLD NT GLLLFT DG Sbjct: 260 ---PVYVLLNKPKDFITTTDDPLERKTVMALVGNACEERIFPVGRLDRNTTGLLLFTNDG 316 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 ELA +L HPS ++++ Y V + + +D+ G+ LEDG ++ + Sbjct: 317 ELAAKLSHPSNQIKKIYQVTLDKPLTHNDEKDILEGLTLEDGEVEVDDMQVLSVDRK--I 374 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + G+NR VRR++ +G +V+ L RV Y + K L RG + L + L+ Sbjct: 375 LGLEIHVGKNRIVRRIFAHLGYEVTALDRVMYAGLD-KKDLKRGNYRFLSEQEVIKLK 431 >UniRef50_Q89AL1 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=RLUB_BUCBP Length = 247 Score = 259 bits (663), Expect = 7e-68, Method: Composition-based stats. Identities = 121/247 (48%), Positives = 169/247 (68%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M EK+QK+LAR G+GSRR IES+I++ V ++ ++ K+G R+ + K+ I+ + + Sbjct: 1 MCEKIQKILARHGYGSRRYIESLIKSHSVKINDEVVKVGQRISINVIQKVIINNNNYKPK 60 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + +VL Y KPEGE+CTR D R T+F++LPKL ARWI +GRLD+N+ GLLLFT Sbjct: 61 LNINKSLKVLLYNKPEGEICTRKDQRNRRTIFEKLPKLSNARWINIGRLDLNSSGLLLFT 120 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDGELA RL HPS +ER Y VRVFGQ + L+ L+ V+L DG A FK+I+F GEG Sbjct: 121 TDGELAYRLTHPSFNIERIYKVRVFGQFTENILKQLNVRVKLLDGYANFKSIQFKYGEGK 180 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+W+NV+L EGR+R VRR+WE +G QV++L+R+ Y + LPK L G W L+ + L Sbjct: 181 NKWFNVSLCEGRHRIVRRIWEKLGFQVNKLVRISYAHLTLPKTLFPGTWITLNKHDIDVL 240 Query: 241 RELVELP 247 + V L Sbjct: 241 CKKVNLR 247 >UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroidetes RepID=D2QMI8_9SPHI Length = 638 Score = 259 bits (662), Expect = 9e-68, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L + +A +G SRRE + +I G +SV+GKI +V G ++ +++ Sbjct: 406 RLNRFIANSGVCSRREADELIAHGDISVNGKIVTE-MGYKVKEGDTVKYGTKVLNPER-- 462 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + KP+ + T DPE R TV + + R VGRLD NT GLLL T DG Sbjct: 463 ---FVYVLLNKPKDYITTTEDPEERKTVMELVADAGKFRMYPVGRLDRNTTGLLLITNDG 519 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 ELA++L HPS + + Y V + + D + +G++LEDGP I + Sbjct: 520 ELADKLTHPSNNIRKIYQVELDKPITDEHFEAIKKGIELEDGPIKPDAISIVTPDAY--V 577 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 + + GRNR VRR++E+ G +V++L R Y + K LPRG W LD + L+ L Sbjct: 578 VGIEIHSGRNRIVRRIFESFGYEVTKLDRTTYAGLT-KKELPRGKWRFLDPKEVVKLKYL 636 >UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae RepID=C6X4T2_FLAB3 Length = 371 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 123/242 (50%), Gaps = 8/242 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + +L K +A +G SRRE + +I G V V+G + +V K+ DG I+ + Sbjct: 138 TIRLNKYIANSGICSRREADELITQGLVQVNGAVVTE-MGYQVQKTDKVIFDGQGITPEK 196 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + KP+G + T D + R TV D + R VGRLD +T G++L T Sbjct: 197 -----PVYVLLNKPKGYISTTKDEKARKTVMDLVANASPYRVFPVGRLDRSTTGVILLTN 251 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG + +L HPS +++ Y V + ++D A L ++ GV+LE+G A +I + G+ N Sbjct: 252 DGHMTKKLTHPSFNMKKIYHVTLDRKLDRADLNAIAEGVRLEEGVAEVDSISYIEGKPKN 311 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + G NR VRR+++ +G +V L RV + + K + RG W L + N L+ Sbjct: 312 -EVGIEIHIGWNRVVRRIFQRLGYEVEALDRVMFAGLT-KKNIKRGHWRILTELEVNNLK 369 Query: 242 EL 243 + Sbjct: 370 MM 371 >UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1DTU8_SULAA Length = 247 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 80/242 (33%), Positives = 121/242 (50%), Gaps = 7/242 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+L K +A++G SRR+ + +I G+V V+GK K + ++G ++ E Sbjct: 2 ERLNKYIAKSGICSRRKADELILEGKVKVNGKTVKNLGLKIDPKKDVVEVEGKIVKPTEK 61 Query: 63 AEQICRVLAYYKPEGELCTR-NDPEGRPTVFDRLPKLR-GARWIAVGRLDVNTCGLLLFT 120 LA YKP G L D GR T+ D L +L+ + VGRLD N+ GLL+ T Sbjct: 62 K----IYLAIYKPVGYLSAVGKDRFGRKTLTDFLNELKIPYKLFPVGRLDYNSEGLLILT 117 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGE AN++ HP E+++ Y V+V G+V L+ + G LEDG IK E Sbjct: 118 NDGEFANKVAHPRNEIKKVYKVKVAGEVSQETLKKMEEGTILEDGFFKPDKIKMLKREED 177 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 W V + G+ R +RR ++ G +V RLIRV+ G I + L + L + + Sbjct: 178 GTWLLVEIHSGKKRIIRRFMDSFGHRVKRLIRVKIGSIDIG-NLKPFDYRYLSEKEIRSI 236 Query: 241 RE 242 + Sbjct: 237 LD 238 >UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A n=134 Tax=Gammaproteobacteria RepID=RSUA_YERPE Length = 235 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 70/239 (29%), Positives = 116/239 (48%), Gaps = 12/239 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L++ SR + + A RV++DG++ K G +++TP +R DG+ + Sbjct: 1 MRLDKFLSQQLGVSRALVARELRAKRVTIDGEVVKSGA-IKLTPEQDVRFDGNPLQQM-- 57 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R KP+G +C+ DP+ PTV L + + A GRLD++T GL+L T D Sbjct: 58 --VGPRYFMLNKPQGYVCSTEDPD-HPTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTDD 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGP--AAFKTIKFSGGEGI 180 G+ ++R+ P E+ Y V + + D + + GVQL + + + Sbjct: 115 GQWSHRVTSPRHHCEKTYLVTLEHPLSDDTAQQFADGVQLYNEKSLTKPAQLDVIEPQ-- 172 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +T++EGR +V+R++ AVG +V L R R GDI L L G + L + Sbjct: 173 --RVRLTISEGRYHQVKRMFAAVGNRVIELHRERIGDITLDDDLAPGEYRPLTTEEIAS 229 >UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5KLG0_9FIRM Length = 261 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 74/266 (27%), Positives = 117/266 (43%), Gaps = 32/266 (12%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M +L K L G G+R +++ I G VSV+G+IAK +R T +I G I Sbjct: 1 MKLRLDKYLTEMGCGTRSQVKKEILKGSVSVNGEIAKKAERKVDTEKDEIIFKGEKI--- 57 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 KP G + D + R TV D + + + GRLD +T GLLL T Sbjct: 58 --FYAGYEYFMLNKPAGVVSATEDKKER-TVIDLIKESKRKDLFPAGRLDKDTEGLLLIT 114 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED-GPAAFKTIKFS---- 175 DG+LA+RL+ P + V++ Y ++ G V + +R +GV + D P ++ Sbjct: 115 NDGQLAHRLLSPKKHVDKIYYAKIKGIVTEEDVRLFEKGVHIGDEKPTMPAALEILSVQK 174 Query: 176 ---------------------GGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVR 214 E +T+ EGR +V+R++ AVG +V L R++ Sbjct: 175 ERRKEKIKEQKILPETKNETDEKEDGYSEIYLTIKEGRFHQVKRMFRAVGKEVVYLKRIQ 234 Query: 215 YGDIPLPKGLPRGGWTELDLAQTNYL 240 +G + L L G + +L + L Sbjct: 235 FGTLTLDPSLKPGQYRKLTEEEVEQL 260 >UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KV26_9FIRM Length = 239 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 9/243 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ G SR ++ I G V ++G+I K +I I Sbjct: 1 MRLDKYLSDMGVESRSVLKREIRKGLVKINGEIVKDPSMEVQPGNSEIVYKDEPIHY--- 57 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP G L + D + TV D VGRLD ++ GLLL D Sbjct: 58 --EEFSYYMMNKPVGVLSSTED-RKQKTVLDLFSDKHRKDLFPVGRLDKDSEGLLLIMND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLE-DGPAAFKTIKFSGGEGIN 181 G LA++L+ P +E++Y V + G++ + +L L +G+Q + D A + Sbjct: 115 GALAHKLLSPKMHIEKKYLVEIPGKISEEELDRLRQGIQYDTDLIAMPAKARCLSSTEEG 174 Query: 182 QWYNVTLTEGRNREVRRLWEAV--GVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 V + EG+ ++++++ A+ V++L R+ G + L L G + +L + Sbjct: 175 SRVEVIIMEGKFHQIKKMFLALSTDYVVTKLQRLSMGPLHLDPALAPGEYRKLSEEEVQA 234 Query: 240 LRE 242 L+ Sbjct: 235 LKN 237 >UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2G3_SALRD Length = 249 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 85/246 (34%), Positives = 129/246 (52%), Gaps = 10/246 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A AG SRR+ + ++E GRV +DG+ V G + +DG + Sbjct: 11 MRINKYIAHAGVCSRRDADDLVEQGRVHIDGERVDQ-HGTCVREGQTVTVDGEEVYP--- 66 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL--PKLRGARWIAVGRLDVNTCGLLLFT 120 L KP+ + T +DP+ R TV D + P+ + VGRLD NT G+LL + Sbjct: 67 --LEFEYLLLNKPKDTISTTDDPKDRRTVLDAIGVPEDNPSGLFPVGRLDRNTTGVLLVS 124 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG+LA+RLMHP E+ + Y VRV V +L L RGV+L DG AA + + + Sbjct: 125 NDGDLAHRLMHPRYEIPKIYYVRVQDDVKPHQLDQLKRGVELSDGAAAADQVAYLDPQRK 184 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + L EGRNR++RR+ EA+G + +L R +Y + + L RG W L+ + L Sbjct: 185 TD-IALELHEGRNRQIRRMMEALGHTIVQLERAKYATLTTGR-LQRGEWRRLEPEEVREL 242 Query: 241 RELVEL 246 + V+L Sbjct: 243 YQRVDL 248 >UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q3J464_RHOS4 Length = 508 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 108/285 (37%), Positives = 154/285 (54%), Gaps = 12/285 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ KVL+RAG SRR+ E +IE GR++V+G+ + V P +I +DG + + Sbjct: 8 ERIAKVLSRAGIASRRDAERMIELGRIAVNGRTI-DSPALNVGPKDRITVDGQPL----A 62 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + R+ YYKPEG + + +D +GR TVFD LP+ R ++VGRLD+N+ GLLL T D Sbjct: 63 PPEPARLWLYYKPEGLVTSASDEKGRETVFDHLPE-GMPRVMSVGRLDLNSEGLLLLTND 121 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GEL RL PS R+Y VRV G DA L L +G+ +E T+ +G N Sbjct: 122 GELKRRLELPSTGWLRKYRVRVKGNPTDADLEPLRKGITVEGESFQPMTVSLDRVQGANA 181 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W V L EG+NRE+RR A+G+ V+RLIRV YG L + L G E+ LR+ Sbjct: 182 WLTVGLREGKNREIRRAMSALGLTVNRLIRVSYGPFRLNE-LEPGMVEEVRP---KILRD 237 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRR--AVKRHSQVSGGRRSG 285 + L P + + R+ A + R R ++ GG R Sbjct: 238 QLGLDPHADGEARPARGRKPEGAARPARSEGAARPARAEGGARPA 282 >UniRef50_Q5F8V3 Pseudouridine synthase n=21 Tax=Proteobacteria RepID=Q5F8V3_NEIG1 Length = 350 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 125/259 (48%), Positives = 175/259 (67%), Gaps = 5/259 (1%) Query: 1 MS-EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISV 59 M E+LQKVLA +G GSRRE+E I G V+V+GK A+LGD+V TP + + G +I + Sbjct: 95 MEPERLQKVLAASGVGSRREMEEWINNGWVTVNGKTAQLGDKV--TPDDHVTVKGSIIKL 152 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 + A+++ R++ YYK EGE+ +R+DP+GR ++FDRLP+ +RW+A+GRLD+NT GLL+ Sbjct: 153 K-WADRLPRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLIL 211 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDL-SRGVQLEDGPAAFKTIKFSGGE 178 TT GEL R HPS EVEREYAVRV G + ++R L GV LEDG A + I GGE Sbjct: 212 TTSGELVQRFAHPSFEVEREYAVRVLGGLTTEQMRSLTEEGVMLEDGLAKVERIYEQGGE 271 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 G N+WYN+ + EGRNREVRR++E+ G+ VSRL+RV +G I LP L RG + EL+ A+ Sbjct: 272 GANKWYNIVIKEGRNREVRRIFESQGLTVSRLVRVAFGPIGLPNRLKRGQFYELNPAEVA 331 Query: 239 YLRELVELPPETSSKVAVE 257 + + ++ + Sbjct: 332 NILKWADMLLPGERRRKKA 350 >UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0LG91_HALO1 Length = 553 Score = 256 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 100/289 (34%), Positives = 146/289 (50%), Gaps = 11/289 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + +LQ+ L++ G +RR+ E +I +G VSV+G+ V ++ + G + Sbjct: 4 AIRLQRYLSQCGVAARRKAEELITSGVVSVNGQRVTELGTKVVPGRDRVSVRGEAVYP-- 61 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + + KP+G L DPE RPTV + L AR + VGRLD + G+LL T Sbjct: 62 ---EEPFYVLLNKPKGCLTAVTDPENRPTVMEYL-HGLPARVVPVGRLDFYSEGVLLLTN 117 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGEGI 180 DG+L+ RL P VE+ Y V+V QV + L L +GV+LEDG I GG Sbjct: 118 DGDLSARLQSPRHHVEKTYHVKVRDQVTERHLEVLRQGVRLEDGTVTRPAQIDMLGGTKS 177 Query: 181 NQ-WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 W +TLTEG++R++ R+ +G V +L RV +G + GL G EL A+ N Sbjct: 178 RHDWLVITLTEGKSRQIHRMLGVLGYTVMKLQRVAFGGLTF-HGLRVGDARELTQAEVND 236 Query: 240 LRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRN 288 LRELV LP +T ++ R + + RA R G R GGR+ Sbjct: 237 LRELVGLPKDTVARGKWTSRREETERARRSRARARVGMSGG--RDGGRD 283 >UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG32_9BACT Length = 279 Score = 256 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 80/244 (32%), Positives = 123/244 (50%), Gaps = 6/244 (2%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L + LA G GSRR++E I GR++V+G + + R + K+ +DG I Sbjct: 41 RLNRYLADCGLGSRRKVEEFITTGRIAVNGNLVQDLSRQIIPGKDKVTLDGKPIQP---- 96 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + L KP G + ++ND GR TV+ LP GRLD + GLL FT D Sbjct: 97 AKEKFYLILNKPRGYVVSQNDELGRKTVYSLLPPKGKQ-LAYAGRLDKESEGLLFFTNDT 155 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 L N L HP +VE+ Y V + +++ +L L +GV++E G I Sbjct: 156 ALINLLTHPKNKVEKVYRVDINRPLNNMELNMLRKGVEIEGGKTLPAGIFVKSKNANGMT 215 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 + +TEGR R++R++ EAVG +V+ L R+++G + L K LP G W L+ + L L Sbjct: 216 LKIVITEGRKRQIRQMIEAVGAKVTYLKRLQFGPLKL-KDLPVGRWRLLEPGEVKALLSL 274 Query: 244 VELP 247 + Sbjct: 275 KKEK 278 >UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus RepID=Q1J642_STRPF Length = 244 Score = 256 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 9/241 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L G G+R +++ +++ + V+ K+ + G + Sbjct: 2 MRLDKFLVATGVGTRSQVKLLLKKKAIFVNQKVETSAKAHIDEYKDLVTYQGTPL----- 56 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFTT 121 + KP G + D + + TV + L + VGRLD +T GLLL T Sbjct: 57 VYESFVYYLLNKPSGYVSATQDRQ-QATVMELLDDTARQKTVFPVGRLDKDTRGLLLLTN 115 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFS--GGEG 179 +G+LA+ L+ P + V +EY +V G + +A +RG+ L+D ++ + Sbjct: 116 NGQLAHDLLSPKKHVTKEYLAKVAGIMTEADKDYFARGISLKDHQCLPAHLEVLASDLQQ 175 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +T+ EG+ +V+R+ A G +V L R+ G + L L G + L + Sbjct: 176 QTSLVKITIQEGKFHQVKRMVAACGKEVLDLQRLSMGPLKLDPSLAEGEFRRLTPEELQS 235 Query: 240 L 240 L Sbjct: 236 L 236 >UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vaginalis RepID=D2RB61_GARVA Length = 284 Score = 256 bits (655), Expect = 7e-67, Method: Composition-based stats. Identities = 88/246 (35%), Positives = 123/246 (50%), Gaps = 7/246 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + +LQK+LA AG GSRR+ E II GRV VD ++ K+R+DG + Sbjct: 45 AIRLQKLLAEAGFGSRRKCEEIILDGRVEVDDELVTTLGTRVDPKRQKVRVDGSRVKFNT 104 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 LA +KP+ L +DP+GR T+ D + R +GRLD ++ GL+L T Sbjct: 105 KL----VTLALHKPKRVLSAMDDPKGRFTLRDIVGDKY-ERIFHMGRLDYDSEGLILMTN 159 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDL-SRGVQLEDGPAAFKTIKFSGGEGI 180 DGEL+ +MHP EVE+ Y V G+++ R L S+GV LEDG Sbjct: 160 DGELSQHVMHPKYEVEKTYIATVEGKINGMVCRRLVSQGVNLEDGWIKLDRCAIIDQNHD 219 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + L G+NR VRR++ AVG V RL+R + G I L L G + L + L Sbjct: 220 TTMVKIVLHSGKNRIVRRIFGAVGFPVKRLVRTQIGPIKLG-DLKAGSYRVLSQTEVRSL 278 Query: 241 RELVEL 246 + V L Sbjct: 279 SKEVGL 284 >UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ05_LAWIP Length = 270 Score = 256 bits (654), Expect = 7e-67, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 126/249 (50%), Gaps = 6/249 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 S ++ K LA AG SRR ++ I G V+++GK I + G + ++ Sbjct: 23 SIRINKALANAGVCSRRNVDKYILNGEVTINGKSVTQPGIYIHPDKDIIALHGRRVDIQL 82 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLP-KLRGARWIAVGRLDVNTCGLLLFT 120 ++ L+ YKP + + DP+ R TV D +P + R VGRLD + GLLL T Sbjct: 83 KNKK-YYYLSMYKPIKVISSVKDPQNRLTVLDFIPFPWKNYRLYPVGRLDFFSEGLLLIT 141 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGG-- 177 DGEL RL HP + + Y V + ++ + L+++S+G+ L DG ++ Sbjct: 142 NDGELTQRLTHPRYHISKVYHVLIRERILNTTLKNISKGITLSDGTKLPPAKVRVLSSIT 201 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 E W +TL +G NR++RR+ + +G+ + +LIRV+ G+I L L G L + Sbjct: 202 ETNTTWLEITLQQGINRQIRRMCKELGLTILKLIRVKQGNINL-SNLQPGEVRPLKNDEI 260 Query: 238 NYLRELVEL 246 L++ V+L Sbjct: 261 KLLKKNVQL 269 >UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D966_9BACT Length = 237 Score = 256 bits (654), Expect = 8e-67, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 120/239 (50%), Gaps = 12/239 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + LA AG GSRR +E +I +G+V ++G++ +V P +++ L+ + Sbjct: 1 MRLNRFLASAGLGSRRGVEELITSGQVRINGQVVTDLST-QVGPTDAVKVGSRLLRTEQK 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP G +CT +D R T+FD LP R VGRLD ++ GLLL T D Sbjct: 60 I-----TVLLNKPAGYVCTASDERDRKTIFDLLP-ANWPRVYHVGRLDKDSEGLLLVTND 113 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+L+ L HP ++E+EY V + + L +G + G A + ++ Sbjct: 114 GDLSLALTHPRYKIEKEYEVLLDKPFNPQDREKLLKGFHIIGGRAKAERVEILNP----T 169 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 ++TLT+G R++R + +G +V RL R+R G + + + + G W L + L+ Sbjct: 170 HLSLTLTQGIKRQIRLMLYDLGYEVERLARIRLGPLKIGE-MRPGEWRLLTSKEIAALK 227 >UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actinobacterium RepID=D0U645_9ACTN Length = 237 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 94/247 (38%), Positives = 134/247 (54%), Gaps = 11/247 (4%) Query: 1 MS-EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISV 59 M+ +L K++A AG SRR + +IE GRV+V+G I + K+ +DG I+ Sbjct: 1 MAQMRLNKIIADAGITSRRGADELIEDGRVAVNGIIVREMGSKFDPEMDKVMVDGETIT- 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 LA +KP+G L T DPEGRP++ D + LR R VGRLD ++ GL+L Sbjct: 60 ---RTLTKSYLALHKPKGVLSTMFDPEGRPSLDDFID-LRKERLFHVGRLDKDSEGLILL 115 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG+L R HPS +E+ Y + G + + L +GV+LEDG T K + Sbjct: 116 TNDGDLTFRATHPSFGLEKTYIIEFDGILPTGVDKVLLKGVELEDGMGRVLTFKQLSPK- 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 W V++ EGR +RRL EAVGV V RLIR ++G I L P G W +L+ + Sbjct: 175 ---WIEVSIHEGRYHIIRRLMEAVGVNVLRLIRTKFGPISLGDT-PEGRWRDLNDGELMN 230 Query: 240 LRELVEL 246 LR+ ++L Sbjct: 231 LRKALDL 237 >UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine synthase B n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C337CA Length = 254 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 77/252 (30%), Positives = 121/252 (48%), Gaps = 9/252 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M +++QK+L++ G SRR E +I R+ ++G+I LGD+ + + +DG +I Sbjct: 1 MKKRVQKILSQLGIASRRHAEILILEKRLKLNGQIVLLGDKADPN-HDLLELDGKIIK-- 57 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLL 118 + + KP G +C+ D + R V D LP +G VGRLD+N+ G LL Sbjct: 58 SHKKTQLFYILVNKPVGIICSCKDSQNRSIVMDLLPSNLRKGMGIHPVGRLDMNSSGALL 117 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG L RL HP + + Y V V G A L+D +GV L+ ++ Sbjct: 118 LTNDGNLTLRLTHPRYHLPKIYEVLVRGNFTQAILKDWRQGVVLDGKKTLPAYLEVINNN 177 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLP----KGLPRGGWTELDL 234 + LTEG+NR +RR+ + + V +L R G I L + G + L Sbjct: 178 RQYTNLKIILTEGKNRHIRRIAQKFELDVIKLHRTAIGPISLSTSKVDNVKLGHYRLLSS 237 Query: 235 AQTNYLRELVEL 246 ++ N L+ L +L Sbjct: 238 SEINTLKYLTKL 249 >UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S1L0_FINM2 Length = 242 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 116/239 (48%), Gaps = 7/239 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A++G+ SRR + +I+ +V V+G I L +V + ++G I++ Sbjct: 1 MRINKFIAQSGYCSRRNADELIKNSKVYVNGTIL-LDLSYQVNDTDIVEVEGKKINL--- 56 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 ++ +A KP G T D V D + R VGRLD ++ GLL+ T D Sbjct: 57 -KEDKIYIAINKPIGYASTVKDKFADKKVVDLIK--SDTRVYPVGRLDKDSHGLLILTND 113 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GE L HP E ++ Y V V G+ + +++ L G+ L+ I+F + Sbjct: 114 GEFTYELTHPKFEHKKIYEVLVKGKPNKTEIKQLKDGILLDGYKLKKSKIEFIENVKNDT 173 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 Y VT+ EGRNR++RR+++ + V L RV+ G+ + L G + L + +R Sbjct: 174 KYRVTIFEGRNRQIRRMFDFINHPVLDLKRVQIGNYKMENSLKSGEYKLLKSKDLDLIR 232 >UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae RepID=Q2K4S3_RHIEC Length = 312 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 81/247 (32%), Positives = 120/247 (48%), Gaps = 6/247 (2%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAE 64 L + L++ G+ SR + E +I RV+VDG+ +I +DG +I A Sbjct: 72 LPRALSKLGYCSRTQAERLIAESRVAVDGRTVSDASAWVDLSTARISVDGLVI-----AA 126 Query: 65 QICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGE 124 + L KP G + TR DPEGRPTV+D L VGRLD + GLLLFT D E Sbjct: 127 EAKIYLMLNKPRGLVTTRQDPEGRPTVYDCLKNFDIPHLSPVGRLDKASEGLLLFTNDTE 186 Query: 125 LANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQWY 184 A L+ P V + Y V++ +DD ++ ++ G++ + + N W Sbjct: 187 FAQTLLDPLTHVTKTYHVQIDRLMDDEEIAAMTSGIRHDGELLTAAATRRLRQGDRNSWI 246 Query: 185 NVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRELV 244 V L EGRNR++RR+ EA+G + RL+RV G + L + LP+G L + LR Sbjct: 247 EVELDEGRNRQIRRMLEALGAECLRLVRVAIGGLELGE-LPKGAVRALTEGELQGLRRRA 305 Query: 245 ELPPETS 251 + Sbjct: 306 GMERARR 312 >UniRef50_B4RM91 Pseudouridine synthase n=8 Tax=Betaproteobacteria RepID=B4RM91_NEIG2 Length = 416 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 125/259 (48%), Positives = 175/259 (67%), Gaps = 5/259 (1%) Query: 1 MS-EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISV 59 M E+LQKVLA +G GSRRE+E I G V+V+GK A+LGD+V TP + + G +I + Sbjct: 161 MEPERLQKVLAASGVGSRREMEEWINNGWVTVNGKTAQLGDKV--TPDDHVTVKGSIIKL 218 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 + A+++ R++ YYK EGE+ +R+DP+GR ++FDRLP+ +RW+A+GRLD+NT GLL+ Sbjct: 219 K-WADRLPRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLIL 277 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDL-SRGVQLEDGPAAFKTIKFSGGE 178 TT GEL R HPS EVEREYAVRV G + ++R L GV LEDG A + I GGE Sbjct: 278 TTSGELVQRFAHPSFEVEREYAVRVLGGLTTEQMRSLTEEGVMLEDGLAKVERIYEQGGE 337 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 G N+WYN+ + EGRNREVRR++E+ G+ VSRL+RV +G I LP L RG + EL+ A+ Sbjct: 338 GANKWYNIVIKEGRNREVRRIFESQGLTVSRLVRVAFGPIGLPNRLKRGQFYELNPAEVA 397 Query: 239 YLRELVELPPETSSKVAVE 257 + + ++ + Sbjct: 398 NILKWADMLLPGERRRKKA 416 >UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium RepID=B3DRY9_BIFLD Length = 256 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 86/246 (34%), Positives = 124/246 (50%), Gaps = 7/246 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 S +LQK+LA+AG GSRR+ E +I GRV VDG++ ++R+DG + V Sbjct: 17 SIRLQKLLAQAGFGSRRKCEDMITEGRVEVDGELVTELGTRVDPHKQQVRVDGSRVRVN- 75 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 LA KP L +DP+GR T+ D + R +GRLD ++ GL+L T Sbjct: 76 ---PNHVTLALNKPRKVLSAMDDPKGRYTLRDIVGDKY-ERIFHMGRLDYDSEGLILMTN 131 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDL-SRGVQLEDGPAAFKTIKFSGGEGI 180 DGEL+ +MHP EVE+ Y + G++ R L + GVQL+DG Sbjct: 132 DGELSQHVMHPKYEVEKTYVATLEGKISGTVCRRLVTTGVQLDDGWIKLDHCAIIDSSRD 191 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + V L G+NR VRR++ ++G V RL+R + G I L L G + L + L Sbjct: 192 HTMVKVVLHSGKNRIVRRIFGSIGFPVKRLVRTQIGPIKLG-DLKPGSYRVLSQTEVRSL 250 Query: 241 RELVEL 246 + V L Sbjct: 251 SKEVGL 256 >UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7V9_9PLAN Length = 811 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 96/283 (33%), Positives = 136/283 (48%), Gaps = 12/283 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +E+LQKVLA AG GSRR+ E +I GRV VDGK+ IR+DG + Sbjct: 33 AERLQKVLAAAGIGSRRDCEELITEGRVDVDGKVVTELGTRVDPVKQTIRVDGEALR--- 89 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + KPEG + T D GR V D +P R AVGRLD + GL++ T Sbjct: 90 --KPQRLYFVVNKPEGVVTTNYDQAGRTRVIDLVP--TDERVFAVGRLDRASEGLIIVTN 145 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGE ANR+ HP V + Y VRV G+ A+L L RG+ L DG I+ + Sbjct: 146 DGEFANRVTHPRYGVTKTYLVRVAGEASTAELAKLRRGIHLSDGFCKVDAIQVKRRHKQS 205 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + L+EG+NRE+RR+ +G +V +L R+ G + L + LP G W LD + L Sbjct: 206 TDMVIQLSEGKNREIRRILARIGHKVLKLKRLAVGSLKLGE-LPLGAWRWLDKQEIERLL 264 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRS 284 L + + + + A K+ ++ +G R Sbjct: 265 SEARLRRKEN----KKGKSATATTADGKAAPKKPAKSAGAIRD 303 >UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ55_9FIRM Length = 250 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 74/254 (29%), Positives = 125/254 (49%), Gaps = 23/254 (9%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A+ G SRR+ + +I+ GRV+V G L V V I IDG I +++ Sbjct: 1 MRINKYIAKCGICSRRKADELIKEGRVTVGGIPL-LECGVNVDEDAVIAIDGRPIEIQKK 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 +A KP G +CT +D GR TV+D L + R +GRLD ++ GL+L T D Sbjct: 60 ----TVYIAMNKPCGYVCTVSDELGRRTVYDLLTDID-ERLFTIGRLDKDSEGLILLTND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLE----------------DGP 166 G+LA +L+ P R++E+ Y V V G ++ LS G+ ++ Sbjct: 115 GDLAQKLLSPKRKIEKNYEVVVRGVPGANDIKKLSGGITIDVEISQTKQNKPVKSIVKYH 174 Query: 167 AAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPR 226 I G + + ++ + EG+ R++R++++ +G +V +L RV++ I L L Sbjct: 175 TKPAKIFEIGQKQGDMKLSMIIKEGKKRQIRKMFDVIGHEVIKLKRVKFAGIELG-DLRP 233 Query: 227 GGWTELDLAQTNYL 240 G + L + L Sbjct: 234 GEFRHLSEDEVRSL 247 >UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Z61_SOLUE Length = 264 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 85/258 (32%), Positives = 136/258 (52%), Gaps = 10/258 (3%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAE 64 L++V ++AG GSR + I G+V V+GK+ D K+ ++G + + Sbjct: 16 LERVFSKAGAGSRTDARKWISGGKVRVNGKVVLNPDHWVDPDHDKVTLEGKPLKAATKS- 74 Query: 65 QICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGE 124 + YKP+G L T DPEGRPTV+ L + VGRLD++T GLL+ T D + Sbjct: 75 ----YILLYKPKGYLTTYRDPEGRPTVYALLGDVGKW-LSPVGRLDLDTSGLLVLTNDND 129 Query: 125 LANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQWY 184 A R+ +P +V + Y ++ + D ++ L GV+L DGP +K + + Sbjct: 130 FAERITNPEHKVPKTYQIKAATVLSDEQIERLRAGVELSDGPTRPAEVKRLRDGPKHTFL 189 Query: 185 NVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRELV 244 +T+TEGRNR+VRR+ EAV +VS+L+R G + + + LP G W L + + LR Sbjct: 190 EMTITEGRNRQVRRMLEAVESKVSKLVRTAIGPVRIGE-LPIGKWRNLTADEVHELR--- 245 Query: 245 ELPPETSSKVAVEKDRRR 262 + +S A +K+R + Sbjct: 246 GQAAKKASGPARDKNRNK 263 >UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A9KNY1_CLOPH Length = 240 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 114/240 (47%), Gaps = 11/240 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K LA G+R E++ +I GRV V+G + + KI +D +S Sbjct: 9 RLDKYLADLSVGTRTEVKQMIRKGRVMVNGNTETSPETKVDSNHDKIFVDSRELSY---- 64 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 KP G + ND + + TV D + + + VGRLD +T GLL+ T DG Sbjct: 65 -VTLEYFMLNKPAGVVSASND-KKQTTVVDLIDEAKRKDLFPVGRLDKDTEGLLIITNDG 122 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAA-FKTIKFSGGEGINQ 182 +LA++L+ P + V++ Y ++ + + G+++++ A ++ + Sbjct: 123 DLAHQLLSPKKHVDKVYFAKLRDPLKKEDEEAFAAGLKIDEEFTALPAKLERISEQEAY- 181 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 VT+ EG+ +++R++EA +V L R+ G + L + L G + EL + LRE Sbjct: 182 ---VTIREGKFHQIKRMFEATRNEVIYLKRISMGSLVLDESLSLGEYRELTEEEIEALRE 238 >UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes RepID=Q11YT0_CYTH3 Length = 562 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 12/245 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISV 59 +L K ++ +G SRRE + +I G V V+G + LG +V+ PG ++ + +++ Sbjct: 327 FEIRLNKYISNSGICSRREADQLIIEGTVKVNGIVVTELGYKVK--PGDSVKYNNKVLNP 384 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 +S + KP+ + T D R TV + R VGRLD NT GLLLF Sbjct: 385 EKS-----VYVLLNKPKDFITTMEDENDRKTVMQLVANATKERIYPVGRLDRNTTGLLLF 439 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG-VQLEDGPAAFKTIKFSGGE 178 T DGELA +L HPS +V++ Y V + + + G + L DGP Sbjct: 440 TNDGELAQKLTHPSNKVKKIYEVELDKPITAEDFDKIVDGKIHLFDGPVKVDEAAIISPS 499 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 + + EGRNR VRR++E++G V +L RV Y + K +PRG W L + N Sbjct: 500 KK--IIGIEIHEGRNRIVRRIFESLGYDVLKLDRVMYAGLT-KKNIPRGSWRYLTATEVN 556 Query: 239 YLREL 243 ++ L Sbjct: 557 KIKYL 561 >UniRef50_D0L0G8 Pseudouridine synthase n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0G8_HALNC Length = 369 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 138/280 (49%), Positives = 176/280 (62%), Gaps = 3/280 (1%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 ++LQK+LA G GSRR IE I AG V ++G +A+LGD G + + G I+V + Sbjct: 3 KQRLQKILATQGLGSRRMIEGWISAGEVKLNGVVAQLGD--VAEAGDVLDVRGQKITVSD 60 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 I RV+ Y+KPEGE+ + +DPEGRPTVF LP +R RWI VGRLD NT GLLL T Sbjct: 61 ETP-IRRVIIYHKPEGEITSTSDPEGRPTVFGSLPAIRQGRWITVGRLDFNTSGLLLATN 119 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DGELANRLMHPS ++ER YAVRV G + + +++ L+ VQL+DGPA F + +GG G+N Sbjct: 120 DGELANRLMHPSHQIERTYAVRVLGGLTEDQVKQLTTEVQLDDGPAHFDQLSDAGGTGVN 179 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +WY+VTL EGRNRE+RR+ EAVG VSRLIR+ Y IPLP L G +L + L Sbjct: 180 RWYHVTLREGRNREIRRMIEAVGAVVSRLIRISYAGIPLPPRLKPGRAQDLPPEMEDALV 239 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGG 281 +LV L PET KV E +RR R Sbjct: 240 KLVGLRPETRRKVQDEDTKRRALKPYRARVQTGTVAKRPA 279 >UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (class) RepID=D2B9T7_STRRD Length = 621 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 126/244 (51%), Gaps = 6/244 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQKVLA+AG SRR E +I GRV+VDG++ + I +DG + Sbjct: 384 VRLQKVLAQAGVASRRACEDMIGDGRVTVDGQVVRRFGARVDPAKQVIHVDGKRLPTM-- 441 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 LA KP G + T +DP+GRP++ D + R R VGRLD T GL+L T D Sbjct: 442 --PDLVYLAINKPIGVVSTMSDPDGRPSLADFVAD-RTERLFHVGRLDTETEGLILLTND 498 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRL HPS V+++Y +V G+++ R L +G++LEDG A + G Sbjct: 499 GELANRLTHPSYGVQKKYWAKVPGRIERDLGRRLKKGIELEDGIAKADSFTLVQEHGQQA 558 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 V L EGR VRR+ E VG V L R+ +G + L + L G L + + L Sbjct: 559 LVEVVLHEGRKHIVRRMLEEVGHPVIDLARIEFGPVKLGR-LKPGTVRALTVKEVGELYA 617 Query: 243 LVEL 246 V L Sbjct: 618 AVGL 621 >UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZC3_ERYRH Length = 246 Score = 253 bits (648), Expect = 4e-66, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 118/240 (49%), Gaps = 10/240 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK +A +G+ SRR+ E +I G+V V+G ++V+ ++ ++G LI+ Sbjct: 7 IRLQKFIAMSGYCSRRKAEVLINEGKVKVNGIKVTE-QGLKVSTEDRVMVNGILIN---- 61 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E+ KP G + + ND + R +V D +P R VGRLD T G L+ T D Sbjct: 62 VEEKKVYYILNKPRGIVSSANDDKDRESVVDLVPNDI--RVFPVGRLDRETTGALILTND 119 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE--GI 180 G+ A + HP ++ + Y V V G++ L G+ +E I + Sbjct: 120 GDFAYYMTHPKFDLSKIYRVSVRGRLSYEVTNSLKEGITIEGVEYKGVEISRVKYDAAKD 179 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +++TL EG+NR++R+++ G+ V +L R + G + + + L G + EL + L Sbjct: 180 KTQFSITLHEGKNRQIRKIFAHFGLPVLKLHRYQIGYLDIDE-LKIGQYRELKPFEVKKL 238 >UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT7_ACIBL Length = 680 Score = 253 bits (647), Expect = 5e-66, Method: Composition-based stats. Identities = 95/313 (30%), Positives = 154/313 (49%), Gaps = 33/313 (10%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 SE+LQK++A AG SRR+ E ++ AGRV+V+G++ IR+DG + + Sbjct: 3 SERLQKIIAAAGMASRRKAEELVTAGRVTVNGEVKNELGSKADPETDDIRVDGKPLKAEQ 62 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + +KP+G + T +DPEGR TV D + + AR VGRLD + GLLL T Sbjct: 63 -----LVYVLLHKPKGYVTTVSDPEGRETVMDLVKGI-PARLYPVGRLDYLSEGLLLLTN 116 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL------------EDG---- 165 DGE+A +L H S V ++Y V+V G+ + ++++L GVQL E G Sbjct: 117 DGEMAAKLTHASTHVPKKYLVKVSGEPTEEQIQELRNGVQLPPEQGHIHADPREGGRFGG 176 Query: 166 --------PAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGD 217 A I+ + G N WY VTL EGRNR++RR+++ +G V ++ RV YG Sbjct: 177 EKRRSTAVKTAPCKIELTRE-GDNPWYEVTLNEGRNRQIRRMFDFIGHHVEKIKRVEYGP 235 Query: 218 IPLPKGLPRGGWTELDLAQTNYLRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQ 277 + L + G + L+ A+ L++ E E + + + + R Sbjct: 236 LKL--DVENGEFRLLNPAEVARLKKAAEGKHEAPRARDEKPRFAKARGERPAFGRGRSDD 293 Query: 278 VSGGRRSGGRNNN 290 + ++ ++ + Sbjct: 294 RAPFQKGSYKDRS 306 >UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1Q0_9BACT Length = 260 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 84/267 (31%), Positives = 117/267 (43%), Gaps = 7/267 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M E+LQKVLA AG GSRRE E++I AGRV+VDG+ I DG I Sbjct: 1 MQERLQKVLASAGIGSRRECENVILAGRVTVDGERVTALGATVDAGKSVIYCDGMPIRPE 60 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 KP+ LCT D R D + K R +GRLD + GL++ T Sbjct: 61 AKI-----YYLLNKPKDCLCTNYDELNRLRAIDII-KNVKQRLYTIGRLDKQSEGLIIIT 114 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGEL+N+L HP EV + Y + + G + + + L GV L G IK Sbjct: 115 NDGELSNKLSHPKYEVNKTYFIEIDGYLSNETITALQSGVWLAFGKTQPVRIKKMHRSFK 174 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + L EG+NRE+RR+ G +V L R++ G + L G + +L + L Sbjct: 175 KSRFEMILCEGKNREIRRMLADHGHKVRTLRRIKIGSLC-DPDLKVGKYRKLTEQEIKSL 233 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQ 267 + E P D + Sbjct: 234 YSMTEKKPIEKKSGKQRYDTVTASKKK 260 >UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A9KPL1_CLOPH Length = 477 Score = 253 bits (646), Expect = 6e-66, Method: Composition-based stats. Identities = 74/285 (25%), Positives = 144/285 (50%), Gaps = 14/285 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + ++ K L+ +G SRRE ++ I G V++DG++A +G +V PG K+ + +S Sbjct: 18 AVRINKYLSESGICSRREADTRIAKGEVTIDGEVAVMGSKV--LPGQKVVLGKKEVS--- 72 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 E+ ++A++KP+G +CT E + D + R +GRLD ++ GL+ T Sbjct: 73 -REEKMVLIAFHKPKGIVCTTEKREP-DNIIDYIK--YSQRIYPIGRLDKDSEGLIFLTN 128 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 +G++ N+++ E+EY V V + A L+ ++ GV + D T++ Sbjct: 129 NGDIVNKILRAGNHHEKEYIVTVNKPITAAFLKGMAGGVPILDTVTKPCTLEAIDK---- 184 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + LT+G NR++RR+ E +V++L+R+R ++ L + L GG+ L + ++ Sbjct: 185 VTFRIILTQGLNRQIRRMCEHFDYKVTKLVRIRIMNVNLGR-LKVGGYRNLTDKELEGIK 243 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGG 286 E +EL + + + + + N A + V+ G+R Sbjct: 244 EQIELSNNEALNLEPDDEFPIERVNVANIAKTHGNNVATGKRRTK 288 >UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U325_9PROT Length = 387 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 109/279 (39%), Positives = 143/279 (51%), Gaps = 10/279 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 SE++ K LARAG SRR+ E I GRV VDG + V V I +D + Sbjct: 8 SERISKRLARAGLCSRRDAERWIAEGRVKVDG-VMLTSPAVNVDDDSVILVDEKPLPEI- 65 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + R+ Y+KP+G + + DPEGR TVFDRLPK R + VGRLD+++ GLLL T Sbjct: 66 ---EPPRLWRYHKPDGLVTSNRDPEGRSTVFDRLPK-DLPRVVTVGRLDIDSEGLLLLTN 121 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG LA L PS R Y VRVFG +D+AKL +L +GV++E + N Sbjct: 122 DGGLARYLELPSTGWVRRYRVRVFGPLDEAKLDNLKKGVRIEGVEYGPIEVTIDKATRTN 181 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W V L EG+NRE+RR+ E VG+ VSRLIR YG L + +P GG E+ L+ Sbjct: 182 SWLTVALREGKNREIRRVMEHVGLTVSRLIRTTYGPFQLGE-VPPGGVEEIKR---RVLK 237 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSG 280 + + L S A K R RR + Sbjct: 238 DQLGLAKGDDSGHAKAKPERTGTQPPGRRPGTLRLRSKP 276 >UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gasseri RepID=Q042N1_LACGA Length = 245 Score = 252 bits (645), Expect = 8e-66, Method: Composition-based stats. Identities = 74/241 (30%), Positives = 121/241 (50%), Gaps = 11/241 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 ++ K LA GSR+E+ S+I+ V+V+G++ + + +V + +DG+ I Sbjct: 12 EMRIDKYLANMNVGSRKEVHSLIKKKVVTVNGELVTIP-KQQVKETDLVAVDGNKI---- 66 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLP-KLRGARWIAVGRLDVNTCGLLLFT 120 A Q KP+G + D + TV L K R VGRLD +T GLLL T Sbjct: 67 -AYQQYHYFLLNKPKGVISATED-RSQQTVISLLKTKDRYQGIAPVGRLDKDTTGLLLLT 124 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGEG 179 DG LA+ L+ P++ V + Y ++ G D + ++G+ L DG +K + Sbjct: 125 NDGALAHELLAPNKHVAKVYRAKIAGVPDPETAKKFAQGLILGDGTKLKPAKLKILKQDQ 184 Query: 180 IN--QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 N + + EG+ +++R++ AVG++V L RV G + LP L RG + E+DLA+ Sbjct: 185 DNNLSQIEIQIQEGKYHQIKRMFGAVGMKVLELDRVSMGKLHLPADLKRGEYKEIDLAEI 244 Query: 238 N 238 Sbjct: 245 K 245 >UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=C1DA59_LARHH Length = 703 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 125/247 (50%), Positives = 177/247 (71%), Gaps = 5/247 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +LQK LA AG GSRR+++ ++ AGRVS++G +A+LG RV PG K+R+D + + Sbjct: 452 EMRLQKALALAGLGSRRDMDELVAAGRVSINGAVAELGARVR--PGDKVRVDSKPV-LIR 508 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 +++ RV+ Y+K EGE+ TR+DPEGR TVFDRLP+ R ++W+A+GRLDVNT GLL+FTT Sbjct: 509 WPDRLPRVIVYHKQEGEIVTRDDPEGRTTVFDRLPQTRSSKWVAIGRLDVNTSGLLIFTT 568 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI- 180 G+LANR+ HPS EVEREYAVRV G++ ++++ + GVQL+DGPA+F+ I+ + Sbjct: 569 SGDLANRMTHPSFEVEREYAVRVLGKLTPEQMKETTAGVQLDDGPASFQFIREDDDKEDS 628 Query: 181 -NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 N WY V + EGRNREVRR++E G+ VSRL+RVR+G + LP L RG + EL+ + + Sbjct: 629 VNHWYRVGIREGRNREVRRMFEHFGLTVSRLMRVRFGIVTLPSRLKRGQFYELNELEVSK 688 Query: 240 LRELVEL 246 L L Sbjct: 689 LMHWSGL 695 >UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria RepID=Q3AVD5_SYNS9 Length = 247 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 91/251 (36%), Positives = 124/251 (49%), Gaps = 8/251 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++LQK++A AG SRR E ++AGRV+VDG++A LGD+ + L I +DG + Sbjct: 4 QRLQKLMAAAGLCSRRRGEDWLQAGRVTVDGRVASLGDQADPNSQL-IEVDGVPL----I 58 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + Q RV KP G +C+ DP+GR TV D LP + VGRLD ++ G LL T Sbjct: 59 SVQEPRVFLLNKPVGVICSCRDPQGRATVLDCLPHQERSGLHPVGRLDADSRGALLLTDQ 118 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GEL RL HP + Y V V G LR G+ L+ + G + Sbjct: 119 GELTLRLTHPRYNHAKTYRVLVRGIPSSQALRRWRDGLLLDGRLTRPARVHCLRSRGASS 178 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 V L EGRNR++RR+ E +G V L RV I L L G W LD + + + Sbjct: 179 LLEVELKEGRNRQIRRVAELLGHPVIDLQRVAIDGIRLD-DLAEGCWRRLDAREWSTI-- 235 Query: 243 LVELPPETSSK 253 LV P + Sbjct: 236 LVGNAPRSMDP 246 >UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HC79_ANADF Length = 354 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 105/289 (36%), Positives = 138/289 (47%), Gaps = 9/289 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK LA AG SRR+ E +I AGRV V+ + + + +DG L+S Sbjct: 12 VRLQKYLAEAGVASRRKAEELILAGRVKVNARAVTVLGSKVDPARDLVTVDGRLVS---- 67 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + YKP G + T +DPEGRPT + L + R +VGRLD + G +LFT D Sbjct: 68 RSETRSYYLLYKPPGCVTTASDPEGRPTALEYLRGV-KERVFSVGRLDFDAEGAVLFTDD 126 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELANRL HP R Y V+V G+ A L L GV+LEDGPA N Sbjct: 127 GELANRLAHPRYGHRRTYLVKVRGEPPPAALERLVAGVRLEDGPARALEAVPHERAERNV 186 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W V + EGR V+RL EAVG+QV RL R +G I + +GL G + L + L+ Sbjct: 187 WIRVVVGEGRFHLVKRLCEAVGLQVQRLYRPEFGGITV-EGLRPGQFRPLAPVEVRALKT 245 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 V L AV A + +++ RR G R G Sbjct: 246 AVGL---AGGAPAVAPRELPRAARRHGHGPPAPPELAPARREGERGEPG 291 >UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8D3_9FIRM Length = 233 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 64/242 (26%), Positives = 103/242 (42%), Gaps = 11/242 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K LA +R E ++++ GRV V+G + K GD ++ + +DG L++ Sbjct: 1 MRLDKYLAETAQCTRSEAKTMLAKGRVQVNGAVCKKGDT-QLKDTDTVAVDGALLTY--- 56 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFTT 121 Q L KPEG + D TV D + R GRLD + G +L T Sbjct: 57 --QKFVYLMLNKPEGVVSASTDKRD-TTVVDLVGDAYPRRELFPAGRLDKTSTGFVLLTD 113 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPA-AFKTIKFSGGEGI 180 DG A+ ++ P V + Y V + + + GV L DG A + + +G+ Sbjct: 114 DGGFAHDILSPRHHVSKTYTVTIDTPLTQEMCTGFAAGVTLADGTALSPAEVTALSPDGL 173 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 V L +G +++R++ G V+ L R G + L L G W EL + + Sbjct: 174 T--VRVVLRQGVYHQIKRMFGVYGAGVNALHREAIGGLALDAQLAPGQWRELSDEEVAKI 231 Query: 241 RE 242 Sbjct: 232 TR 233 >UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSZ6_9SPIO Length = 252 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 78/243 (32%), Positives = 120/243 (49%), Gaps = 10/243 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +LQ LA AG SRR E IIE GRVSV+G + G +V G + DG + Sbjct: 14 EMRLQVYLAHAGVASRRACEKIIEEGRVSVNGTVVT-GMGSKVCAGDTVLFDGKPV---- 68 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 E + KP G +CT +D +GRPT D L + R +GRLD+ + G +LFT Sbjct: 69 HPEARKCYVLLNKPAGFVCTLSDEKGRPTAADLLKEAYSERLYNIGRLDMFSSGAILFTN 128 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+ A ++ HPS ++E+EY + L RG++++ ++ Sbjct: 129 DGDFAAKIEHPSAQIEKEYVIETTQDFPPELLTRFERGIRVDGIFYKCRSAAAVNRRK-- 186 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + L EG+NRE+RR+ ++ + RL+RVR G++ L L G + +L + + L Sbjct: 187 --LRIVLVEGKNREIRRVLDSFNCTIKRLVRVRIGNLELG-TLKAGEFRDLTVQERQALL 243 Query: 242 ELV 244 L Sbjct: 244 GLA 246 >UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BUF1_DESAD Length = 251 Score = 251 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 79/249 (31%), Positives = 127/249 (51%), Gaps = 6/249 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + +L K +A AG SRR + +++ G+V V+G++A ++ ++G L+ E Sbjct: 6 TIRLNKYIASAGIASRRGADELVQKGKVKVNGELADSPGIQVDPDNDRVEVNGKLVQHDE 65 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLR-GARWIAVGRLDVNTCGLLLFT 120 ++ + + +K + T DP+GR TV D LP R VGRLD + G+LL T Sbjct: 66 KSKDL--YILLHKTIETVTTAKDPQGRKTVLDLLPPDVINRRVFPVGRLDFYSEGMLLLT 123 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG--PAAFKTIKFSGGE 178 TDGEL NR+ HP + + Y V + G++ + +L + G+ LED A IK Sbjct: 124 TDGELCNRMTHPKWHLPKIYHVTIRGKLSEKELSVMQNGMYLEDKGELLAPVKIKAISEV 183 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 G Y + L +G NR++RR++ + RL RVR G I L L G W EL + Sbjct: 184 GETTKYEMELRQGINRQIRRMFGEFDKTILRLKRVRQGRIELGA-LKPGKWRELSAKELT 242 Query: 239 YLRELVELP 247 L++ +++ Sbjct: 243 LLKKDLKMK 251 >UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus RepID=Q49YI4_STAS1 Length = 232 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 63/238 (26%), Positives = 105/238 (44%), Gaps = 9/238 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ G G+R E++ ++ +V++D K+ + ++++ I Sbjct: 1 MRLDKFLSNMGVGTRTEVKQRLKKKQVTIDDKVETSPKKQINPELEIVKVNDQKIDFVNK 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 L KP+ + D + TV D + R VGRLD +T GLLL T D Sbjct: 61 -----VYLMLNKPKDYISATTDEQ-HKTVLDLIEDYRYLDLFPVGRLDKDTEGLLLITND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+ + LM P + V + Y V + + G++L +G A + G E Sbjct: 115 GQFNHELMSPGKHVAKTYEVISQKNITKNDINAFKVGIELNEGLAKPAKL-VQGDELNKS 173 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + VT+ EGR +V+R++ A+ +V L R+R GD+ L L G + L L Sbjct: 174 F--VTIYEGRYHQVKRMFHAIDNEVLALKRIRIGDLQLDSTLASGEYRHLTQQDFKLL 229 >UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=B9MRL6_ANATD Length = 233 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 68/237 (28%), Positives = 119/237 (50%), Gaps = 14/237 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVRE 61 +L K L G GSR +++ +I G V+V+GK I ++ ++ I +DG + Sbjct: 1 MRLDKFLTHCGFGSRSQVKKLIREGIVTVNGKQIVEVDFKINP-EEDIIEVDGRV----- 54 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFT 120 + + KP+G +C+ N+ TVF + R VGRLD + GLL+ T Sbjct: 55 AKFSKQIYIMMNKPKGYVCS-NEELASLTVFSLISDDLKYRDLHTVGRLDKDAEGLLIIT 113 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGEG 179 DGE +R++ P + +E+EY VR+ +VD+ KL + G+ L+DG Sbjct: 114 DDGEYTHRVISPKKRIEKEYLVRLEKEVDEEKLNEFENGIILDDGYKTLPAKYTIID--- 170 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQ 236 + + + EG+ +V+R++EA+G +V L R+R G + L + L G + + + + Sbjct: 171 -STTVKLCIYEGKYHQVKRMFEAIGNKVVDLKRLRIGGLNLDQSLKPGEYRVMKVEE 226 >UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG n=68 Tax=Bacteria RepID=YTZG_BACSU Length = 239 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 116/230 (50%), Gaps = 8/230 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K+LA +G+GSR+E++++++AG V +DGK AK ++ + G + RE Sbjct: 1 MRLDKLLANSGYGSRKEVKAVVKAGAVMIDGKPAKDVKEHVDPDTQEVTVYGEPVDYRE- 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL-PKLRGARWIAVGRLDVNTCGLLLFTT 121 L KP+G L D + TV D L P+ GRLD +T G LL T Sbjct: 60 ----FIYLMMNKPQGVLSATEDSR-QQTVVDLLTPEEMRFEPFPAGRLDKDTEGFLLLTN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGEGI 180 DG+LA+RL+ P + V + Y V + Q+ + DL GV +E G + + Sbjct: 115 DGQLAHRLLSPKKHVPKTYEVHLKSQISREDISDLETGVYIEGGYKTKPAKAEIKTNDSG 174 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWT 230 N +T+TEG+ +V+++ +AVG +V L R+ G + L L G + Sbjct: 175 NTVIYLTITEGKYHQVKQMAKAVGNEVVYLKRLSMGRVSLDPALAPGEYR 224 >UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7PFL3_CHIPD Length = 389 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 81/285 (28%), Positives = 147/285 (51%), Gaps = 17/285 (5%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAE 64 L K ++ G+ SRRE +++I +GRV ++ + A LG+R + PG + +DG LI+ + + Sbjct: 7 LNKFISDTGYCSRREADNLITSGRVLLNDRPAALGNRYK--PGDTVEVDGSLITA--AKK 62 Query: 65 QICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGE 124 + LA KP G + T + + + + R +GRLD ++ GL+ T DG+ Sbjct: 63 EKRVYLALNKPPG-ITTTTELHIKDNIISFV--NYPQRIFPIGRLDKDSEGLIFLTNDGD 119 Query: 125 LANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQWY 184 + N+++ + E+EY VRV +D L +S+GV + D ++ +G + + Sbjct: 120 IINKILRAANNHEKEYVVRVNKPIDTNFLHQMSQGVPILDTRTLPCKVQMTGRQ----TF 175 Query: 185 NVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRELV 244 +TLT+G NR++RR+ E +G V L RVR ++ L K LP G W L A+ +++E V Sbjct: 176 RITLTQGLNRQIRRMCEYLGYTVVGLQRVRIMNVRLDK-LPLGKWRYLSEAEIAFIKESV 234 Query: 245 ----ELPPETSSKVAVEKDRRRMKANQI-RRAVKRHSQVSGGRRS 284 ++ E+ A K + ++ + R ++ + G + Sbjct: 235 ADSTKVSGESKPSGARRKTAKPVEEKEHLRTGSTPKNKPATGHKR 279 >UniRef50_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris MCS10 RepID=Q0AS26_MARMM Length = 372 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 106/291 (36%), Positives = 149/291 (51%), Gaps = 11/291 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 SE++ K LARAG SRRE+E +IE GRV VDGK +VT I +DG I Sbjct: 8 SERIAKFLARAGVASRREVERMIEGGRVKVDGKTLDTPA-FKVTGSEHIEVDGKRIEPPA 66 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + ++ Y+KP+G + T DPEGR TVFD +PK G R I++GRLD+ + GLLL T Sbjct: 67 A----TKLWRYHKPDGLVTTHADPEGRETVFDAIPKDIG-RVISIGRLDLTSEGLLLLTN 121 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG LA L PS R Y R FG + ++ L+ L GV +E ++ G N Sbjct: 122 DGALARALELPSTGWTRRYRARAFGSISESALKILRAGVTVEGIKYGPMEVEVERETGSN 181 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W V + EG+NREVR+ +AVG++V+RLIR+ YG L + L +G + L Sbjct: 182 IWLEVGIREGKNREVRKALDAVGLRVNRLIRIAYGPFQLGQ-LEKGEIKSVPS---RVLH 237 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQ-IRRAVKRHSQVSGGRRSGGRNNNG 291 + + + + AN+ R+ ++ G R GG G Sbjct: 238 DQCGHLIDMGDTPTGQAIAKPRPANRAARKPGQKPDGKPGQRAMGGPGQPG 288 >UniRef50_C6AV89 Pseudouridine synthase n=17 Tax=Rhizobiaceae RepID=C6AV89_RHILS Length = 268 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 82/248 (33%), Positives = 120/248 (48%), Gaps = 6/248 (2%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESAE 64 L + L++ G+ SR + E +I RV+VDG+ I IDG +I A Sbjct: 27 LPRALSKLGYCSRTQAERLIAENRVAVDGRTVSDASAWVDLATASISIDGLVI-----AA 81 Query: 65 QICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDGE 124 + L KP G + TR+DPEGRPTV+D L VGRLD + GLLLFT D E Sbjct: 82 EAKIYLMLNKPRGLVTTRHDPEGRPTVYDCLRDFDIPHLSPVGRLDKASEGLLLFTNDTE 141 Query: 125 LANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQWY 184 A L+ P V + Y V++ +DD + ++ G++ + + N W Sbjct: 142 FAQILLDPVTHVTKTYHVQIDRIMDDEDIAAMTAGIRHDGELLTATAARRLRQGDRNSWI 201 Query: 185 NVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRELV 244 V L EGRNR++RR+ EA+G + RL+RV G + L + LP+G L + LR Sbjct: 202 EVELDEGRNRQIRRMLEALGTECLRLVRVAIGGLELGE-LPKGAVRALTEPELQALRRKT 260 Query: 245 ELPPETSS 252 + + Sbjct: 261 GMERTRRN 268 >UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae RepID=B3QY10_CHLT3 Length = 297 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 70/264 (26%), Positives = 131/264 (49%), Gaps = 14/264 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVRE 61 +L K +A G SRR+ + +IE G V V+GK+ +LG +V+ ++ ++G + Sbjct: 43 IRLNKFIALCGEASRRKADEMIEQGEVMVNGKVVMELGYKVD-RRADEVVVNGKKL---- 97 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + KP+ + T +D + R TV + + R VGRLD +T G+LL T Sbjct: 98 HENTQKIYILLNKPKDVVTTSSDEKSRKTVVELVG--LKDRVFPVGRLDRDTTGVLLLTN 155 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED--GPAAFKTIKFSGGEG 179 DG+L RL HP+ V+++Y + ++ L+++ +G +L+D + + +G Sbjct: 156 DGDLTYRLTHPTFGVQKQYVATLDKKITSVDLQNIKKGFRLKDTGEKVSPCNARILD-DG 214 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 W V + EG+N ++ R++ + G V +L+RV YG + + + RG W L + + Sbjct: 215 YTIW--VAIHEGKNHQIHRMFWSFGYNVKKLVRVAYGGLEVG-TMRRGEWRFLTQLEVSK 271 Query: 240 LRELVELPPETSSKVAVEKDRRRM 263 L + V+L + + ++ Sbjct: 272 LYKQVQLEGKQRIQKNQSTHNKKE 295 >UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium RepID=B8DUD9_BIFA0 Length = 257 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 87/245 (35%), Positives = 121/245 (49%), Gaps = 7/245 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK+LA+AG GSRR+ E +I GRV VDG++ ++R+DG I + Sbjct: 19 IRLQKLLAQAGFGSRRKCEEMITDGRVEVDGELVTELGTRVDPKRQQVRVDGSRIRLN-- 76 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 LA KP L T +DP+GR T+ D + R +GRLD ++ GL+L T D Sbjct: 77 --PRHITLALNKPRKVLSTMDDPKGRYTLRDIVGDKY-ERIFHMGRLDYDSEGLILMTND 133 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDL-SRGVQLEDGPAAFKTIKFSGGEGIN 181 GEL+ +MHP EVE+ Y + G + R L GVQL+DG Sbjct: 134 GELSQHVMHPKYEVEKTYIATLEGHMSGTVCRRLVRTGVQLDDGWIKLDHCSIIDSNRDQ 193 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 V L GRNR VRR++ A+G V RL+R + G I L + G + L + L Sbjct: 194 TIVKVVLHSGRNRIVRRIFGAIGFPVKRLVRTQIGPIKLG-DIKSGSYRVLSQDEVRALS 252 Query: 242 ELVEL 246 + V L Sbjct: 253 KEVGL 257 >UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6G735_9DELT Length = 300 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 88/276 (31%), Positives = 129/276 (46%), Gaps = 12/276 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK +A AG SRR+ E +I AG V V+G++ + ++ + G I Sbjct: 31 VRLQKFMASAGVASRRKAEELITAGVVRVNGQVVRELGTRVFPERDRVTVRGEPIQAESK 90 Query: 63 AEQICRVLAYYKPEGELCTRN---DPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 KP+G + + D GRPTV L R VGRLD ++ G+LL Sbjct: 91 -----VYYVLNKPDGVVSSAAGSVDERGRPTVISLL-HGVSERLYPVGRLDFHSRGVLLL 144 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPA--AFKTIKFSGG 177 T DG LA L HP V + Y V+ G++ + + + L GV+L+DG + Sbjct: 145 TNDGGLAEALTHPRHGVVKTYHVKFQGKLTEEQEQLLRDGVELDDGAITRPVAELFAFRE 204 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 N WY + + EG NR++RR+ EA+G V +LIRV GDI G+P G + L+ + Sbjct: 205 TATNVWYQIGIREGLNRQIRRMGEAIGHPVLKLIRVAIGDIT-ADGVPEGEFRALNATEV 263 Query: 238 NYLRELVELPPETSSKVAVEKDRRRMKANQIRRAVK 273 L V+L PE + R R +A K Sbjct: 264 GQLLANVKLAPEGRRGRSGGAGRPRGGQRDRPKAKK 299 >UniRef50_A6EPE0 Pseudouridine synthase n=1 Tax=unidentified eubacterium SCB49 RepID=A6EPE0_9BACT Length = 291 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 77/282 (27%), Positives = 135/282 (47%), Gaps = 15/282 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K ++ +G+ SRR+ + +IE G+V+++G LGDR P I ++G+LI+ + Sbjct: 9 RLNKAISDSGYCSRRQADKLIEEGKVTLNGNPVSLGDRA--MPDDVIHVEGNLITENNNL 66 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + KP G CT D V D + R VGRLD + GLLL T DG Sbjct: 67 ----VYIILNKPVGITCTT-DLRVEGNVVDYID--HKERIFHVGRLDKPSEGLLLMTNDG 119 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 ++ N+++ E+EY V+V + +R + G+ LE+ K K + Sbjct: 120 DIVNKILRAGNSHEKEYFVKVDRPITTEFIRRMGNGIPLEELETTTK--KCFVEQVSRFV 177 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 + + L +G NR++RR+ E + +V L R R +I L LP G W +L + L++ Sbjct: 178 FRIILVQGLNRQIRRMCEYLDYEVMELKRERIMNIELG-DLPYGEWRDLTKEELQGLKDA 236 Query: 244 VELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSG 285 V ++ + ++++ +R A + A + + +R Sbjct: 237 V---AKSENDSFIDREEKRKAAPKTGDANRNRPRNEAPKRES 275 >UniRef50_Q21MN5 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q21MN5_SACD2 Length = 324 Score = 250 bits (638), Expect = 6e-65, Method: Composition-based stats. Identities = 78/302 (25%), Positives = 136/302 (45%), Gaps = 23/302 (7%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + +L K ++ +GH SRRE + +I + RV ++G + +LG V G + +D + Sbjct: 6 AVRLNKFISDSGHCSRREADKLIASDRVKINGLLPELG--AVVESGDVVTVDDQPLRASA 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + + +AY KP G CT D + + D + R +GRLD + GL+L T+ Sbjct: 64 ADKTDRIYIAYNKPFGITCTT-DQTVKGNIVDAID--HDERIFPIGRLDKPSEGLILLTS 120 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG++ N+++ ++EY V V + +SRG+ + ++ G Sbjct: 121 DGDIVNKILRAENAHDKEYIVTVNKNLAPNFAEKMSRGLPILGTITKPCKVRVIGK---- 176 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + LT+G NR++RR+ + +G V +L+R R +I L K L G W L + + L Sbjct: 177 TTFKIILTQGLNRQIRRMCDYLGYDVKQLVRTRIMNIELGK-LKPGQWRRLTKVELDLLT 235 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAV-------------KRHSQVSGGRRSGGRN 288 + +T+ K A K A + R A R S G + G ++ Sbjct: 236 KATSQSSKTAIKGANAKSSASPTATKPRVAKPKVKKEPKDLDKHGRPKNKSTGVKRGAKS 295 Query: 289 NN 290 N Sbjct: 296 KN 297 >UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UFV9_9RHOB Length = 354 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 111/290 (38%), Positives = 152/290 (52%), Gaps = 17/290 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ KVLA AG SRRE E +IE GRVSV+G+I + +V G +R+DG I R Sbjct: 17 ERIAKVLAHAGIASRREAERLIEKGRVSVNGEILRTPA-FKVMAGDDVRVDGESIGQRPP 75 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 RV Y+KP G L T +DP+GR TVF LP+ G R I+VGRLD+N+ GLLL T D Sbjct: 76 ----TRVWRYHKPVGLLTTHSDPQGRDTVFQTLPQDMG-RVISVGRLDLNSEGLLLLTND 130 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA L PS R Y VR +G D L +L G ++ + G N Sbjct: 131 GELARVLELPSTGWTRRYRVRAYGNASDKALAELENGTVVDGVVYGPVEVTVDRRTGANV 190 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W V + EG+NREVR++ ++VG+ V+RL+RV YG L L RG E+ ++ + LR+ Sbjct: 191 WLTVGIKEGKNREVRKVLQSVGLTVNRLMRVAYGPFQLGS-LKRG---EISESKLSVLRD 246 Query: 243 LVELP-------PETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSG 285 + + D R A +A + H + G R+G Sbjct: 247 QLGKLYPLDTDGLPLKPGETAKPDTRTGTAKAKPKANRPHQKSGGKPRAG 296 >UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B6IXC3_RHOCS Length = 551 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 107/293 (36%), Positives = 141/293 (48%), Gaps = 13/293 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ K L+RAG SRR+ E I GRVSV+G++ V V PG +I +DG + Sbjct: 31 ERISKRLSRAGLCSRRDAERWIAEGRVSVNGRVLDTPA-VTVRPGDRIVVDGQPV----P 85 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + RV Y+KP+G + T D +GRPTVFD LP R ++VGRLD+ + GLLL T D Sbjct: 86 EPEPTRVWRYHKPDGLVTTARDEKGRPTVFDNLPPEL-PRVVSVGRLDLTSEGLLLLTND 144 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA L P R Y VRV G D+A++ L++G+ +E G N Sbjct: 145 GALARHLELPVTGWLRRYRVRVHGAPDEAQIAKLAQGIIIEGIEYGPIETVVDRSVGANT 204 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGW----TELDLAQTN 238 W V+L EGRNREVRR+ E +G+ VSRLIRV YG L K L G + Q Sbjct: 205 WLTVSLREGRNREVRRVMEHLGLPVSRLIRVAYGPFQLGK-LEPGQVEEVPRRVLRDQLP 263 Query: 239 YLRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 + A R + + R S GGR G Sbjct: 264 GFFAAEDAAAADGRPAAGPVRMRYDRLPRAARDAAPPSATKGGR--APAREAG 314 >UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (class) RepID=B0RHF4_CLAMS Length = 291 Score = 249 bits (636), Expect = 9e-65, Method: Composition-based stats. Identities = 83/252 (32%), Positives = 119/252 (47%), Gaps = 6/252 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQKV+A AG SRR E +I AGRV+V+G+ R ++ +D + + Sbjct: 25 VRLQKVMAAAGVASRRVCEDMIAAGRVTVNGETVTEPGRRIDPDVDEVAVDDQAVQL--- 81 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + R L KP G + D GRP + R VGRLD T GLL+ T D Sbjct: 82 -DTSKRYLMLNKPVGIYSSLRDERGRPD-LREFTEEFEERLFNVGRLDAETSGLLILTND 139 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA+ L HPS V + Y +V G+V ++ L++GV LEDGP + G G Sbjct: 140 GDLAHVLAHPSFGVLKTYIAKVTGRVTPQTIQRLTQGVDLEDGPIQADRARILSGGGDQT 199 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 +TL GRNR VRR+ + VG V L+R ++G + L L G +L + L Sbjct: 200 LVEITLHSGRNRIVRRMLDEVGHPVEELVRRQFGPLHLGS-LGVGRVRDLTSDELGQLLT 258 Query: 243 LVELPPETSSKV 254 + + Sbjct: 259 ISREARAQAGPA 270 >UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IHU4_BEII9 Length = 528 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 101/292 (34%), Positives = 155/292 (53%), Gaps = 12/292 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +++ KV+ARAG SRR+ E+ I GRVSV+G + V V+ I +DG ++ R Sbjct: 90 QRIAKVMARAGLCSRRDAEAWIAEGRVSVNGTVLTQPG-VSVSDEDVILVDGEKLAARGH 148 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRG--ARWIAVGRLDVNTCGLLLFT 120 R+ ++KP G + T +DPEGRPTVFD L + R +++GRLD+NT GLLL T Sbjct: 149 ----TRLFLFHKPRGLVTTNHDPEGRPTVFDYLHERHPDMPRVLSIGRLDINTEGLLLLT 204 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG L+ L P+ R Y VR G D A L L +G+ ++ A + F +G Sbjct: 205 NDGGLSRLLELPTTGWVRRYRVRAKGTTDQAVLDQLRQGITIDGIHYAGMEVTFDREQGA 264 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N W ++L EG+NREV+R+ E +G++V+RLIR+ +G L LP G + +T L Sbjct: 265 NSWLTLSLREGKNREVKRVLEQIGLEVNRLIRLSFGPFQLG-DLPEGD---VTEVRTRVL 320 Query: 241 RELVELPPETSSKVAVEK-DRRRMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 R+ + ++ V + D + RA K S+ +S +++ Sbjct: 321 RDQLGPSLAAAAGVDWTRHDEDAAEPAAPERARKTPSKTRTEGKSVTKSHGA 372 >UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK28_FIBSS Length = 243 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 131/247 (53%), Gaps = 7/247 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K ++ +G SRR + ++ GRV V+G+ ++ +DG L+ + + Sbjct: 1 MRINKYISLSGFASRRAADELVADGRVQVNGETISDLGHQVDETKDQVTVDGKLLKLPTN 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + +V+ ++KP G +CT++DP+GR TV+D LP + VGRLD+ + GLLLFT D Sbjct: 61 KK--TKVIMFHKPAGCVCTKDDPQGRRTVYDYLPPGYH-NFKYVGRLDLQSRGLLLFTDD 117 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF---SGGEG 179 GEL RL HPS EV R Y V + ++ + L GV + D + + Sbjct: 118 GELLYRLTHPSFEVPRSYYVWTTRPLSESAAQRLVDGVDIRDPEDPDAQEEIAFATDVYL 177 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 N + + L EG+NRE+RR+ A+G ++ L RV Y I L LP G + EL + N Sbjct: 178 ENGFAELVLIEGKNREIRRMMRAIGYEIRDLKRVSYCQIQLG-DLPAGEFRELTPNELNK 236 Query: 240 LRELVEL 246 LR+ V L Sbjct: 237 LRQAVHL 243 >UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F n=90 Tax=Bacteria RepID=RLUF_SHIFL Length = 290 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 83/297 (27%), Positives = 143/297 (48%), Gaps = 23/297 (7%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 S +L K ++ +G SRRE + IE G V ++GK A +GD+V+ PG ++++G LI RE Sbjct: 6 SVRLNKYISESGICSRREADRYIEQGNVFLNGKRATIGDQVK--PGDIVKVNGQLIEPRE 63 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + + ++A KP G + T D E R + D + R +GRLD ++ GL+ T Sbjct: 64 A--EDLVLIALNKPVGIVSTTEDGE-RDNIVDFV--NHSKRVFPIGRLDKDSQGLIFLTN 118 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+L N+++ + E+EY V V + D +R + GV + +K Sbjct: 119 HGDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKEAPF--- 175 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + +TL +G NR++RR+ E G +V +L R R ++ L G+P G W +L + L Sbjct: 176 -VFRITLVQGLNRQIRRMCEHFGYEVKKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLF 233 Query: 242 ELVELPPETSSK--------VAVEKDRRRMKANQIRRAVKRHSQ---VSGGRRSGGR 287 +L+E + +++ +M+ + + S GR+ GR Sbjct: 234 KLIENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKKGR 290 >UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F269_9PROT Length = 289 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 87/252 (34%), Positives = 133/252 (52%), Gaps = 9/252 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ + LA G SRRE + I+AGRVS++G++ + V V G + +D L+ Sbjct: 43 ERINRYLAHCGLCSRREADRWIQAGRVSINGQLIE-APGVIVKSGDTVMVDDKLVEP--- 98 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 +Q + Y KP+G+LC+R D + RP ++D + ++GRLD++T GLL+ T D Sbjct: 99 -QQGHTYILYNKPKGQLCSRLDKKKRPLIYDFIDVA--PNVQSIGRLDMDTEGLLMLTDD 155 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG-VQLEDGPAAFK-TIKFSGGEGI 180 G L L HP+ +V REY RV G V+ L L RG + + G + + Sbjct: 156 GALTRALTHPAAKVPREYRARVAGIVELETLAKLRRGGMDIGRGDTSDAWEVTVDSESAG 215 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + W N+ + GR REVRR E G V RL+R R+G I L + +P+G W L+ + L Sbjct: 216 HTWLNIIILRGRWREVRRTLEECGHPVRRLMRTRFGPIKLDEDMPKGTWRALNRGEIRKL 275 Query: 241 RELVELPPETSS 252 R+ V P + Sbjct: 276 RDRVINPDAKTD 287 >UniRef50_C8P302 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P302_ERYRH Length = 229 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 112/238 (47%), Gaps = 11/238 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K LA G G+R++++ +++ G V+V+ + + V ++ + G +S ++ Sbjct: 1 MRLDKFLAHNGFGTRKDVKILVKKGMVTVNHDVVRDAGMVLNLEKDEVFVKGESVSYQKD 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 KP G +C N PE P+V + + VGRLD +T GLLL T D Sbjct: 61 I-----YFMMNKPAGYICEHN-PEMYPSVLELIESYHRDLVF-VGRLDADTEGLLLITND 113 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+ ++R+ H V ++Y V + D +L +G+ L D ++ G Sbjct: 114 GQFSHRVAHSKSNVHKQYYVELDKPFDLRFCEELEKGMMLGDELLKPAQVEVVGERA--- 170 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 ++T+ EG+ +V+R+ A +V+ L R++ G + L L G + +L + N Sbjct: 171 -IHLTIGEGKYHQVKRMMHACDNEVTYLKRIKIGALELDSSLQPGAYRDLSEEEINLF 227 >UniRef50_A8U4V7 Pseudouridine synthase n=10 Tax=Lactobacillales RepID=A8U4V7_9LACT Length = 239 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 8/241 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K+L G GSRR ++ ++++ +V V+G+ + ++ + G I Sbjct: 1 MRLDKLLFETGFGSRRTVKRLLKSKQVQVNGQTIMVDSLNVDPQLQEVTVAGVPIDY--- 57 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL-PKLRGARWIAVGRLDVNTCGLLLFTT 121 Q +KP G + +D + TV D + P R VGRLD +T GLLL T Sbjct: 58 --QPHVYYMLHKPAGVVSAVSDAVNQ-TVIDLIEPSQRVPGLFPVGRLDKDTEGLLLLTN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGP-AAFKTIKFSGGEGI 180 +G+L +L+ P +EV + Y V V +V D + G+ + G + Sbjct: 115 NGQLGYQLLIPKKEVTKCYEVVVNERVTDDDQLAFTAGIVFDGGVICKPAQLTILSQSDT 174 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + ++EG+ +V++++ +VG +V L R+ G + L K L G + L + L Sbjct: 175 ESRVLLEISEGKFHQVKKMFLSVGKKVIYLKRLSMGPLQLDKTLSLGSYRPLHAEELVAL 234 Query: 241 R 241 + Sbjct: 235 K 235 >UniRef50_D0BMY5 Pseudouridine synthase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BMY5_9LACT Length = 237 Score = 248 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 60/241 (24%), Positives = 114/241 (47%), Gaps = 7/241 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L+ +L + SR++++ +I +G V +D A I + G + Sbjct: 1 MRLEHLLMKHFDISRKQMKKLISSGEVLIDSTPATHVSNNVDPQIQVITVQGSRME---- 56 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + + KP+G + D + PTV D +GRLD +T GLL+ T + Sbjct: 57 -DNSQKYYLLNKPKGVITATTDSQ-LPTVIDLFKNENIEGLYPIGRLDRDTEGLLIITNN 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGEGIN 181 G L RL++P + +E+EY V V G +D++ ++ G+ DG + Sbjct: 115 GPLGYRLLNPIQHIEKEYYVEVNGPLDNSCIQRFYDGIMFHDGTICKPAKLSILESSPSF 174 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 VT++EG+ ++++++ VGV+V+ L R+R+G+ L + L G + L+ ++ L+ Sbjct: 175 SKATVTISEGKFHQIKKMFLCVGVKVTFLKRIRFGEFLLDESLSPGEYRPLNFSELQILK 234 Query: 242 E 242 Sbjct: 235 H 235 >UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37AA4 Length = 255 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 65/245 (26%), Positives = 114/245 (46%), Gaps = 10/245 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K ++ +R +I+S+ G V+V+G K D T + + G+ IS Sbjct: 4 IRLDKFISERTEYTRSQIKSLCAKGSVTVNGSPVKRSDTKIDTGADDVTVCGNAIS---- 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL-PKLRGARWIAVGRLDVNTCGLLLFTT 121 + R + KP+G + + +D +G TV + P++R GRLD ++ G LL T Sbjct: 60 -SERFRYILLNKPKGYVSSTDDKDGE-TVIKLVPPEMRSKGLFPAGRLDKDSTGALLITD 117 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGP-AAFKTIKFSGGEGI 180 DG LA+R+ P+ + + YA + + + ++G+ L +G + ++ E Sbjct: 118 DGALAHRICSPNNHISKIYAAELSRPFEQEYVEKFAKGIVLANGEACSPCKVQ--KAENA 175 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + V L EG +V+R++ AVG V L R+ G + LPK LP G L + Sbjct: 176 DNLAFVELHEGMYHQVKRMFAAVGNHVENLKRISIGGLILPKDLPLGKCMYLLPKDIEQM 235 Query: 241 RELVE 245 ++ Sbjct: 236 FTKID 240 >UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LG30_SYNFM Length = 250 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 93/252 (36%), Positives = 123/252 (48%), Gaps = 6/252 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +LQKVLA+AG SRR E +I GRV V+G + +I +D V Sbjct: 3 KVRLQKVLAQAGIASRRGAEEVIRQGRVVVNGIVVTELGVKVDPHADRITVD----RVTI 58 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + + L +KP + T DP+GR TVFD +P GAR VGRLD + GLLL T Sbjct: 59 AMVESRVYLLLFKPRCCVTTARDPQGRKTVFDFVPDA-GARLFPVGRLDFDAEGLLLLTN 117 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG LANRL HP V + Y V G A L L GV LE+G A + G + Sbjct: 118 DGLLANRLQHPRYGVTKTYEVAAMGHPTPAALDRLRTGVMLEEGMTAPAEVTVIGSSPRS 177 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + L +G NR+++R+ EAVG V + RV +G + L L GG L + L Sbjct: 178 TRLRIVLHQGWNRQIKRMGEAVGHPVLSIKRVAFGPLKLGS-LKPGGSRHLKSGEVELLY 236 Query: 242 ELVELPPETSSK 253 +LV L E + Sbjct: 237 KLVHLDKEQRNA 248 >UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B1M661_METRJ Length = 601 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 102/293 (34%), Positives = 149/293 (50%), Gaps = 14/293 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ K +ARAG SRR+ E++I AGRVSV+G+ R VT +I IDG Sbjct: 86 ERIAKAMARAGIASRRDAETMIVAGRVSVNGETLTSPAR-NVTENDRILIDGEP----MP 140 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + + R+ ++KP G + T DPEGR TVFD LP+ R +AVGRLD+NT GLLL T D Sbjct: 141 SRERSRLWIFHKPRGVVTTARDPEGRQTVFDVLPE-DLPRVVAVGRLDINTEGLLLLTND 199 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA + HP R Y VR G D A+L L++GV ++ +G N Sbjct: 200 GGLAKVIAHPDTGWLRRYRVRAHGDTDQAQLDRLAKGVTIDGMEYGPVEATLDRVQGDNV 259 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W + L EG+NREV+R+ E +G+ V+RLIR+ +G L L G ++ +T L++ Sbjct: 260 WLTLGLREGKNREVKRILEHLGLSVNRLIRLSFGPFQLG-DLEVG---LVEEVRTRVLKD 315 Query: 243 LVELPPETSSKVAVEKDRR----RMKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 + + V + R + + +Q + RR+ R Sbjct: 316 QLGKSLAEQAGVDFDSPVREPIAPFGGTRPADRDAKSAQPAPARRNAARPAPA 368 >UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=A1UU09_BARBK Length = 499 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 97/267 (36%), Positives = 136/267 (50%), Gaps = 10/267 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 SE++ K LARAG SRR+ E +I AGR++V+G + + V P I +D I Sbjct: 44 SERIAKRLARAGIASRRDAEMMIIAGRIAVNGTVVTTP-VLNVIPSDHITVDEIPIPPI- 101 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + R+ Y+KP G + T DPEGRPTVFD LPK R ++VGRLD+NT GLLL T Sbjct: 102 ---ERTRLWLYHKPSGLVTTNRDPEGRPTVFDNLPKE-MPRVVSVGRLDINTEGLLLLTN 157 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG LA L P R+Y VR G++ ++L L G+ ++ +G N Sbjct: 158 DGGLARVLELPLTGWVRKYRVRAHGKIKQSELDKLKNGIAIDGIFYGSIDASIDREQGSN 217 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W +V L EG+NRE++ A+G+ V+RLIRV YG L L G EL LR Sbjct: 218 VWLSVALREGKNREIKNFLGALGLSVNRLIRVSYGPFQL-SDLEEGAVRELKG---RTLR 273 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQI 268 + + + + + +N Sbjct: 274 DQLGERLIMQANANFDAPILKPFSNSA 300 >UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin514 RepID=B9XS61_9BACT Length = 235 Score = 247 bits (631), Expect = 4e-64, Method: Composition-based stats. Identities = 81/241 (33%), Positives = 116/241 (48%), Gaps = 7/241 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK LA AG SRR E II GRVSV+G + I +DG + ++ Sbjct: 2 VRLQKFLAEAGVASRRASERIILGGRVSVNGDTVRELGTKVDPIHDSIALDGAPLRLKRK 61 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 +A KP G +C+R D R + D LP +VGRLD ++ GL+ T D Sbjct: 62 L-----YVALNKPRGYVCSRKDDRKRKVIGDLLP-AEWDNLYSVGRLDSDSEGLIFLTND 115 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GE + L HP V ++Y V G+V+ L+ G+ E + + Sbjct: 116 GEFSLHLTHPRYRVLKKYLATVEGRVEQEMLQRFKHGIVHEGEKLKVDRARTLSVQNSTS 175 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + LTEG+NRE+RRL+E+ G+ VSRL+R++ G I L + L G W L A+ L Sbjct: 176 LVELELTEGKNREIRRLFESQGLTVSRLVRMQIGKIKLGE-LRSGKWRMLTEAEIKSLLS 234 Query: 243 L 243 Sbjct: 235 Q 235 >UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae RepID=C6VP86_LACPJ Length = 246 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 105/249 (42%), Gaps = 10/249 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K L G+R ++ +I+ G ++ +G+ G + + +D + Sbjct: 1 MRVDKFLHAMRIGTRTQVRRLIKDGHITANGEPVISGKQQINPGSDTVFLDDVQVRY--- 57 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK-LRGARWIAVGRLDVNTCGLLLFTT 121 Q KP G + D TV D VGRLD +T G+L+ T Sbjct: 58 --QQYFYYVMNKPVGVITATTDSAA-KTVMDLFNTTDFRDDLFPVGRLDKDTEGILVITN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSG--GE 178 DG L++ L+ P+ V + Y V G++ A+L + + G+ L+DG + Sbjct: 115 DGALSHDLLSPNHHVTKVYEAEVTGEITAAQLANFNDGITLKDGTELQPAQAEIVQFHEI 174 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 + + EG+ +V+R+ +G +V L R+++G + LP GL G + L + Sbjct: 175 ENFTTIRIMIHEGKYHQVKRMVGTLGERVVGLRRIKFGSLTLPVGLLAGNYRALTDDELT 234 Query: 239 YLRELVELP 247 L+ P Sbjct: 235 ALKADANQP 243 >UniRef50_Q7VBH8 Pseudouridine synthase n=1 Tax=Prochlorococcus marinus RepID=Q7VBH8_PROMA Length = 237 Score = 246 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 121/240 (50%), Gaps = 5/240 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M E+LQK+++ +G SR++ E++I+ RV ++ +IA LG++ ++ + + Sbjct: 1 MKERLQKIISNSGICSRKKAEALIDQKRVFINNEIASLGEKADILIDII----RIDDYII 56 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + +V+ KP G + T D GR TV D LP VGRLD ++ G L+ + Sbjct: 57 PKNIKSSKVILLNKPTGVISTCRDTHGRKTVLDLLPDNLQKGMHPVGRLDKDSRGALIIS 116 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 +G L L HP ++ Y+V + G L+ G++++ + +G Sbjct: 117 NNGLLTLHLTHPRFNHKKRYSVLITGVPSKNTLKKWRNGIEIDKKTTRKALVNIVKRQGN 176 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N + L EGRNR++R++ + +G V LIR+ G+I L GL G W E++ + N L Sbjct: 177 NTLLEIVLFEGRNRQIRKVADKLGHPVIDLIRIEIGNIKL-NGLKEGAWREINELEWNQL 235 >UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organisms RepID=A0NV51_9RHOB Length = 520 Score = 246 bits (628), Expect = 8e-64, Method: Composition-based stats. Identities = 108/284 (38%), Positives = 144/284 (50%), Gaps = 12/284 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ KV+AR G SRRE E IE GRV ++GK+ V VTP K+ +DG + +R Sbjct: 103 ERIAKVMARVGLCSRREAEVWIENGRVELNGKLLTTPA-VTVTPDDKVVVDGQPLPMR-- 159 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + R+ Y+KP G + T DPEGRPTVF+RLP R + VGRLD+NT GLLL T D Sbjct: 160 --ERTRLWLYHKPRGLVTTNKDPEGRPTVFERLPD-DLPRVLTVGRLDINTEGLLLLTND 216 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA L P+ R Y VR FG+V L L G+ +E +G N Sbjct: 217 GGLARVLELPATGWLRRYRVRAFGKVTQPDLDTLKDGIAIEGVLYGAIEATLDKEQGNNV 276 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W V L EG+NREV+R+ E +G+ V+RLIR+ YG L LP G E+ LR+ Sbjct: 277 WMTVGLREGKNREVKRVLEHLGLAVNRLIRLSYGPFQL-MDLPEGDVREIRG---RVLRD 332 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGG 286 + + + + + K GG R GG Sbjct: 333 QLGDALAEEAGADFDAPIFHAPKPEAEK--KPAGAKRGGSRDGG 374 >UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodictyon group RepID=Q3B289_PELLD Length = 250 Score = 246 bits (628), Expect = 8e-64, Method: Composition-based stats. Identities = 76/248 (30%), Positives = 118/248 (47%), Gaps = 11/248 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + ++ + LA G SRR + ++ GRV+++G +A V ++ +DG S Sbjct: 12 AVRINRYLAMCGIASRRAADQMVLEGRVTINGVLASEPGVKVVPGKDEVIVDG---SKFA 68 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 E + + KP + T +D R V D + R VGRLD T G+LL T Sbjct: 69 QPEGRKIYILFNKPRNVITTSSDERNREMVLDFID--VNERVYPVGRLDRKTTGVLLLTN 126 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLED--GPAAFKTIKFSGGEG 179 DG LAN+LMHPS V++EY + A L L+ G++L D + K G Sbjct: 127 DGMLANKLMHPSSNVKKEYIAVLDAPFPQASLPLLTGGMRLSDTGEKVSPCQAKIM---G 183 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +++ EG+N +VRR+++ +G +V+RL R Y + + L RG W L + Sbjct: 184 DGSQVWISIHEGKNHQVRRMFKTLGFEVTRLDRPTYAGLTVG-DLRRGQWRHLTRTEVQQ 242 Query: 240 LRELVELP 247 LR L P Sbjct: 243 LRHLAGSP 250 >UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine bacterium 105 RepID=Q6SI36_9BACT Length = 255 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 89/253 (35%), Positives = 119/253 (47%), Gaps = 10/253 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +LQKVLA AG SRR E +IE GRV+V+G+ IR+DG + Sbjct: 5 KVRLQKVLASAGISSRRAAERLIEVGRVTVNGRSVTKLGAKADPDLDDIRVDGRKVKTGR 64 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 L KP G + TR DPEGR T+ + + +R VGRLD ++ GL++ T Sbjct: 65 PR----IYLLVCKPRGYVTTRFDPEGRRTILNLISNVR-EYVYPVGRLDYDSEGLVILTN 119 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGG---- 177 DG LA RL HP VER Y VRV G A + L GV + A ++KF Sbjct: 120 DGTLAARLTHPRYGVERVYEVRVRGVPSQAAIDSLRHGVLINGRRTASSSVKFLRRLKAK 179 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 N V + EGRNR+VR++ EA+G V RL R + G + L G L ++ Sbjct: 180 SSENALLRVAIREGRNRQVRKMCEAIGHPVIRLRRTQIGPLR-DSSLKVGKHRLLTTSEV 238 Query: 238 NYLRELVELPPET 250 L E+ Sbjct: 239 AALMRASEVSHPQ 251 >UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F n=235 Tax=Bacteria RepID=RLUF_SALTI Length = 289 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 82/294 (27%), Positives = 137/294 (46%), Gaps = 22/294 (7%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K ++ +G SRRE + IE G V ++GK A +GD+V G ++++G LI RE+ Sbjct: 8 RLNKYISESGICSRREADRFIEQGNVFINGKRAAIGDQVV--AGDVVKVNGRLIEPREA- 64 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 ++A KP G + T D E R + D + R +GRLD ++ GL+ T G Sbjct: 65 -DDLVLIALNKPVGIVSTTEDGE-RDNIVDFV--NHSKRIFPIGRLDKDSQGLIFLTNHG 120 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 +L N+++ + E+EY V V + D +R + GV + +K Sbjct: 121 DLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKEAPF----V 176 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 + +TL +G NR++RR+ E G +V++L R R ++ L G+P G W +L + L +L Sbjct: 177 FRITLVQGLNRQIRRMCEYFGYEVTKLERTRIMNVSL-SGIPLGEWRDLTDDELIDLFKL 235 Query: 244 VELPPETS----------SKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGR 287 +E + + + + R A S GR+ GR Sbjct: 236 IEGSSSEAKPKAKAKPKTAGIKRPVVAIEKSNEKARPASSGKRFTSPGRKKKGR 289 >UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AL84_SEBTE Length = 233 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 62/240 (25%), Positives = 114/240 (47%), Gaps = 11/240 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K LA +G G+R+E++ +++ R+SV+ ++ + DG I +E Sbjct: 1 MRIDKFLANSGIGTRKEVKELLKKKRISVNDEVVTEAKTHIDEDNDFVAFDGKRIEFKE- 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGA-RWIAVGRLDVNTCGLLLFTT 121 + KP+ + +D R TV D L + VGRLD +T GLL+ T Sbjct: 60 ----FLYIMLNKPQDVISATDDERHR-TVLDLLEEPLTKVGLFPVGRLDKDTEGLLVLTN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG++A+ L+ P + V + Y V + + + L GV+LE ++F + Sbjct: 115 DGKMAHELLSPKKHVPKRYYVELKKTLSKEEAAILENGVELETFTTKPAKVEFITEDK-- 172 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + ++EG+ +V+R+++ VG +V L R G++ L + L G + EL + L+ Sbjct: 173 --VYIIISEGKYHQVKRMFKCVGNRVLFLKRTGMGNLGLDENLAPGEYRELTSDELEQLQ 230 >UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIW4_9FIRM Length = 237 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 108/242 (44%), Gaps = 9/242 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ +R E I GRV+V+G + + D +V I +DG ++ Sbjct: 2 MRLDKYLSERTGLTRSESRKAITKGRVAVNGMVCRKADT-QVAEDAAIAVDGTPLA---G 57 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFTT 121 + Q + KPEG + D TV D + R GRLD + G +L T Sbjct: 58 SYQKYVYIMLNKPEGVVSASRDKRD-TTVVDLVAADFPRRALFPAGRLDKTSTGFVLLTD 116 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPA-AFKTIKFSGGEGI 180 DG LA+ L+ P+ V+++Y V + + DA + GV L DG A + +G + Sbjct: 117 DGALAHDLLSPAHHVDKQYLVTLDTPLTDAMRAGFAAGVTLADGETMAPAEAEPAGEDP- 175 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 VTL +G +++R++ G V+ L R G + L L G W EL + L Sbjct: 176 -CVVKVTLHQGVYHQIKRMFGVYGAGVNALHRYAIGGVALDAALAPGQWRELTAEELALL 234 Query: 241 RE 242 ++ Sbjct: 235 QK 236 >UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMJ6_9BACT Length = 239 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 111/242 (45%), Gaps = 13/242 (5%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +L K++A+ +R E ++ G V V+ K+G + DG ++ RE Sbjct: 7 KIRLDKMIAKCTDLTRSEATRALKNGFVKVNDIPQKVGKSTIDLANDVVTFDGEVLEYRE 66 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFT 120 KP+G +C D TV D LP +R + GRLD++T GL++ T Sbjct: 67 -----TIYFMLNKPKGYVCAAKDER-LKTVLDLLPPALASREPFSCGRLDIDTTGLVILT 120 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQL--EDGPAAFKTIKFSGGE 178 DG A+ + P R+ E+ Y V ++ D +R+L +GV L +D A I+ + Sbjct: 121 DDGTWAHGITSPKRKCEKSYLVGSVSELSDEDMRNLEQGVYLDGDDKITAPAKIEKIDEK 180 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 Y + +TEGR +V+R++EAV V L R + G + L L G W +L + Sbjct: 181 ----TYRLKITEGRYHQVKRMFEAVDNMVKSLHREQIGGLSLDDDLDEGNWRDLTAEEVK 236 Query: 239 YL 240 Sbjct: 237 LF 238 >UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4Z6_9FIRM Length = 235 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 67/240 (27%), Positives = 110/240 (45%), Gaps = 11/240 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K LA +R E ++++ GRV+V+G + K GD ++ G + +DG ++ R+ Sbjct: 1 MRLDKYLAETAQCTRSEAKTLLNRGRVTVNGAVCKKGDT-QLREGDSVAVDGAPLAYRQ- 58 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFTT 121 L KPEG + D TV D + R VGRLD + G +L T Sbjct: 59 ----FVYLMLNKPEGVVSASTDKRD-TTVVDLIGDAYPRRELFPVGRLDKTSTGFVLLTD 113 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPA-AFKTIKFSGGEGI 180 DG A+ ++ P R V + Y V + + + R + GV L DG A + ++ +G+ Sbjct: 114 DGGFAHEILAPKRHVSKTYTVVIDTPLTEEMRRGFAEGVTLADGTALSPAEVEALTPDGL 173 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 V L +G +++R++ G V+ L R G + L L G W EL + + Sbjct: 174 T--VKVRLRQGVYHQIKRMFGVYGAGVNALHRDAIGGLALDPALAPGQWRELSAEEVTAI 231 >UniRef50_A9MDW0 Pseudouridine synthase n=43 Tax=Rhizobiales RepID=A9MDW0_BRUC2 Length = 611 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 98/280 (35%), Positives = 140/280 (50%), Gaps = 10/280 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 SE++ K LARAG SRRE E++I GR++V+GK+ + V V I +DG + Sbjct: 103 SERIAKRLARAGIASRREAETMIATGRIAVNGKVLE-SPAVNVKRTDIITVDGKPLRQ-- 159 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 + R+ Y+KP G + T DPEGRPTVF+ LP R ++VGRLD+NT GLLL T Sbjct: 160 --TERTRLWLYHKPAGLVTTNRDPEGRPTVFEALPPE-MPRVLSVGRLDINTEGLLLLTN 216 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG L+ L PS R Y VR G+V +L +L G+ ++ + +G N Sbjct: 217 DGGLSRVLELPSTGWLRRYRVRAHGKVTQQQLDELKNGIAVDGVFYGSVEAELERVQGAN 276 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 W ++ L EG+NREV+ + A+G+ V RLIRV +G L L G E+ LR Sbjct: 277 VWISIGLREGKNREVKNILGALGLTVGRLIRVSFGPFQLG-DLEEGAVREIKG---RTLR 332 Query: 242 ELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGG 281 + + S + +N + R G Sbjct: 333 DQLGDKLIEESGADFDAPVLNEFSNAAVQGRTRREMEEGE 372 >UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteraceae RepID=A8ZRV1_DESOH Length = 241 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 77/241 (31%), Positives = 112/241 (46%), Gaps = 12/241 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK L+ AG SRR E I GRV+V+G++ + DGH +++ Sbjct: 10 IRLQKFLSGAGVCSRRRAEVYIAEGRVAVNGQVVTELGTKVDPESDDVMFDGHRVTL--- 66 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + +A KP G + + + TV + + R VGRLD +CGLLL T+D Sbjct: 67 -AESHVYIALNKPPGYVTSCL-QKQETTVMELV--AVDQRVFPVGRLDKPSCGLLLMTSD 122 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G L RL HPS + E+EY V V DA L + RG+ + +K + Sbjct: 123 GGLHQRLSHPSFDHEKEYDVACDRPVSDADLDAMRRGMVITGRKTRPAKVKRLSD----R 178 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + L EGRNR++RR+ E +G +V L R+R I L L G W L + L Sbjct: 179 RFLIILQEGRNRQIRRMAEMLGNRVVLLRRIRIAHIHLG-DLAEGRWRYLTEEEKKALLH 237 Query: 243 L 243 Sbjct: 238 Q 238 >UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacteria RepID=A1U6Q2_MARAV Length = 231 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 13/239 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + L+ SR+E + ++ AGRV VDG+ + +R +V + +DG ++ Sbjct: 1 MRLDQYLSNGTELSRKEAKKVVSAGRVKVDGETCRQANR-QVEAEQSVHLDGKPVNPPGD 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 L +KP G L D +PT D LP+ +R GRLD +T GLLL T+D Sbjct: 60 I-----YLMMHKPAGVLSATTDSS-QPTALDLLPRGLASRVHIAGRLDKDTTGLLLLTSD 113 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG--PAAFKTIKFSGGEGI 180 G+ ++ + P RE + Y V + + + R L +GV L ++ Sbjct: 114 GQWSHAVTSPRRECRKSYRVWLAEAIPEQACRALEKGVMLNGETTETRPAEVRV----HN 169 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 NQ ++T+ EGR +V+R+ AVG +V L R R G I L L G + L + Sbjct: 170 NQLIDLTIGEGRYHQVKRMLAAVGNRVEALHRFRIGSIELDDKLAPGEFRALTYQEIRS 228 >UniRef50_B7L142 Pseudouridine synthase n=9 Tax=Alphaproteobacteria RepID=B7L142_METC4 Length = 674 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 101/291 (34%), Positives = 147/291 (50%), Gaps = 12/291 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ K +ARAG SRR+ E++IEAGRV+++GK+ + VT +I +D + R Sbjct: 22 ERIAKAIARAGIASRRDAEALIEAGRVTLNGKVLT-SPAINVTDSDRITVDDEPLPAR-- 78 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + R+ +KP G + T DPEGRPTVFD LP+ R +A+GRLD+NT GLLL T D Sbjct: 79 --ERTRLWLLHKPRGVVTTARDPEGRPTVFDGLPEEL-PRVVAIGRLDINTEGLLLLTND 135 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA + HP R Y VR FG V L L +G+ ++ +G N Sbjct: 136 GGLAKVIAHPDTGWLRRYRVRAFGDVTQPDLDKLKKGLTVDGMEYGPIEATLDRAQGDNV 195 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W + L EG+NREV+R+ E +G+ V+RLIR+ +G L L G E+ L++ Sbjct: 196 WLTLGLREGKNREVKRILEHLGLSVNRLIRLSFGPFQLG-DLEVGLVEEIRT---KVLKD 251 Query: 243 LVELPPETSSKVAVEKDRRR--MKANQIRRAVKRHSQVSGGRRSGGRNNNG 291 + + V E R ++A + GR G + G Sbjct: 252 QLGKNLAEQAGVDFESPVRETIAPFGSPKKATRATQAAPAGRGRQGARDEG 302 >UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYA4_9BACT Length = 638 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 96/285 (33%), Positives = 142/285 (49%), Gaps = 10/285 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K+LA G SRR+ E +I AG V+VDG++ I +DG + Sbjct: 27 RLHKILAHRGVASRRKSEQLIAAGSVTVDGEVVTEPGTRVDPKHQVILVDGRPL----PR 82 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 E + +YKP+G + T DPEGRPT+ D P + + +GRLD T G LL T +G Sbjct: 83 EPETFLFLFYKPKGVVSTLFDPEGRPTLRDYFPGIDP--LLHIGRLDFQTEGALLLTNNG 140 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG-VQLEDGPAAFKTIKFSGGEGINQ 182 +L+ R++HP E+ R Y V++ G + A L ++RG ++L+ P + N Sbjct: 141 DLSQRILHPRFEIPRTYLVKIQGGMSPAHLERMARGEIRLDGRPVVPLELVPERQTSTNA 200 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 WY +TLTEGRNREVRRL+E + V +L+R +G + L GL G + + +T L Sbjct: 201 WYRITLTEGRNREVRRLFETLNYFVLKLVRTAFGPLTLA-GLEPGEYRTVTPHETELL-- 257 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGR 287 L P++ K + RR R+ R S G R Sbjct: 258 LAGTRPQSLPKNLDSRFSRRDDDGGAPRSEGRRSGREEKVGQGSR 302 >UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=Q1J0B9_DEIGD Length = 253 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 101/255 (39%), Positives = 134/255 (52%), Gaps = 13/255 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQK LARAG SRR E +I AGRV+V+G+IA LG V P ++R+DG LI + Sbjct: 6 ERLQKRLARAGVASRRAAEDLITAGRVTVNGQIATLGRTV--MPDDEVRVDGRLIE---A 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 Q YKP G + T D GR V +P + VGRLD ++ GLLL TTD Sbjct: 61 PAQESVTFLLYKPAGYVTTARDEYGRRNVLSAMPPI--PGLHPVGRLDKDSEGLLLLTTD 118 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+L L HP E+ Y GQ A+LR L G++L DGPA + + + G Sbjct: 119 GQLTLTLTHPRYGHEKAYRAWTAGQPVAAELRVLETGIELADGPARALSARPARGGA--- 175 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 VTLTEGRNR+VRR+ +A+G V RL+R R G + L L G + L + L Sbjct: 176 --LVTLTEGRNRQVRRMLDAIGYPVHRLLRYRVGGLWLG-DLEPGEYRLLSPRDLHDLLH 232 Query: 243 LVELPPETSSKVAVE 257 ++P + E Sbjct: 233 PAQVPRHVWERAERE 247 >UniRef50_P42395 Ribosomal large subunit pseudouridine synthase B n=5 Tax=Buchnera aphidicola RepID=RLUB_BUCAP Length = 257 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 113/257 (43%), Positives = 169/257 (65%), Gaps = 3/257 (1%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M+ K+QK+L+ G+GSRR IE +I+ G++S++G+ A +G + +I ID I + Sbjct: 1 MTAKIQKILSDLGYGSRRFIECMIKCGKISINGEKAIIGQYLNKKNPGEILIDKKKI-IV 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + + + +VL Y KP GE+CTR+D + R TVFD+LPKL RW++VGRLD+NT GLLLFT Sbjct: 60 KRNKNLPKVLIYNKPIGEVCTRDDFQKRLTVFDKLPKLNLNRWVSVGRLDINTKGLLLFT 119 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIK--FSGGE 178 DG LAN+LMHP ++EREY +R+FG+++ K+ L +GV++ G +FK I + E Sbjct: 120 NDGTLANKLMHPRSQIEREYNIRIFGEMNKNKINILRKGVKIIHGYVSFKEIVPLYDKKE 179 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 G N+W+ L EG+NRE+R +++++ QV++LIRVRYG+I LPK L G W L+ Sbjct: 180 GKNKWFKGILCEGKNREIRLMFKSIQCQVNQLIRVRYGNIILPKNLKEGQWMMLNSIFLK 239 Query: 239 YLRELVELPPETSSKVA 255 L L+ E +K Sbjct: 240 KLYNLINFDKEIINKKK 256 >UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EB54_9CLOT Length = 248 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 67/244 (27%), Positives = 111/244 (45%), Gaps = 9/244 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M ++ K L+ +R + + ++ AGRV V+G K D G +IR+DG + + Sbjct: 1 MKIRIDKFLSTQAIATRSQAKEMLRAGRVLVNGTPVKAADLKVDPEGDEIRVDGRVYGYQ 60 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLF 119 E L KP+G + +D R TV D +P R GRLD +T G +L Sbjct: 61 EHL-----YLMLNKPQGVVSATDDKVHR-TVLDLVPPELRRRGLFPAGRLDRDTVGFVLI 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGE 178 T DGE A+ ++ P V + Y + G + + +L L++GV L DG + Sbjct: 115 TDDGEFAHNILSPRHHVPKTYEAGLDGPIGENELSVLAQGVVLGDGTKCRPAELTVL-QS 173 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 G + + EGR +++R++ AVG +V L R + G + L L G + + Sbjct: 174 GERPLIQIVIVEGRYHQIKRMFAAVGRRVLTLKRTKIGGLALDPSLKEGDCIAISPSNLE 233 Query: 239 YLRE 242 ++ Sbjct: 234 KIQM 237 >UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3IC94_PSEHT Length = 327 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 73/281 (25%), Positives = 128/281 (45%), Gaps = 16/281 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K ++ G SRRE + IE GRV+V+G ++G V+V+ + +DG + Sbjct: 6 RLNKFISDTGFCSRREADKYIEDGRVTVNGIRPEMG--VKVSSTDVVLVDGKTLKAIPKR 63 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 +AY KP G CT + + + + + R +GRLD + GL+ T +G Sbjct: 64 ----VYIAYNKPVGITCTT-ERKIQSNIVKAV--NYPDRIFPIGRLDRPSEGLIFLTNEG 116 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 ++ N+++ E+EY V V ++ + + GV + D + +G + Sbjct: 117 DIVNKILRAGNNHEKEYVVTVDKPLNRQFVAKMGNGVPILDTITKKCKVTQTGAQQ---- 172 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 + + LT+G NR++RR+ E +G +V L RVR ++ L KGL G W L + + Sbjct: 173 FTIILTQGLNRQIRRMCEYLGYEVVTLKRVRIMNVTL-KGLKVGQWRHLTEQEMAIINNS 231 Query: 244 VELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRS 284 + +T D Q +AV + + S +R Sbjct: 232 ISDSGKTQE--HSVYDEANALQQQSPQAVAKPQKTSDKKRD 270 >UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PP04_CHIPD Length = 516 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 76/244 (31%), Positives = 123/244 (50%), Gaps = 9/244 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 L K +A +G SRR+ ++ G+V+V+G++ +VT ++ I+ I++ Sbjct: 279 EMPLNKYIAHSGLCSRRKAVDFVKEGKVTVNGELITEPA-FKVTAKDEVAINNRKINI-- 335 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGA--RWIAVGRLDVNTCGLLLF 119 ++ + KP+G + T +DPEGR TV + + R VGRLD NT GLLL Sbjct: 336 --QKNLVYILLNKPKGYITTTDDPEGRKTVMELIQDATTEEQRVYPVGRLDRNTSGLLLL 393 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DGELA +L HP +++ Y V + + A ++ +GV LEDG A + + G Sbjct: 394 TNDGELAQKLAHPKHNIKKIYHVGLNKPLTKAHFENILQGVTLEDGVANVDALGYVEA-G 452 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + + G+NR VRR++E + +V +L RV Y + K + RG W L + Sbjct: 453 DKTQVGIEIHSGKNRIVRRIFEHLEYEVEKLDRVTYAGLT-KKNINRGKWRFLTEKEIIL 511 Query: 240 LREL 243 L+ Sbjct: 512 LKHF 515 >UniRef50_C4XEA6 Pseudouridine synthase n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XEA6_MYCFE Length = 269 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 76/252 (30%), Positives = 128/252 (50%), Gaps = 15/252 (5%) Query: 1 MSE--KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLIS 58 M E ++QK++A+ G+ SRR+ E IE V V+GKI +LGD+ + +I+I+ LIS Sbjct: 24 MKELIRVQKLIAQTGYCSRRKAEEYIEKKLVKVNGKIVQLGDKA--SENDEIKINNQLIS 81 Query: 59 VRESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLL 118 +++ KP+ + T DP+GR TV D + R VGRLD +T G LL Sbjct: 82 LQKP---NFVYFLLNKPKKTISTVKDPKGRKTVVDLI--NYSERIAPVGRLDYDTTGALL 136 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T D E+ N+L HP E+ R Y VR+ + + + ++ G+ + + + Sbjct: 137 LTNDWEMINKLTHPKYEILRTYRVRIDSPLSLKEFKLINAGLIVNGKFSK----QIVDQV 192 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 + VTL G ++ L++A+ +V L RV + ++ + K +P G + L L + Sbjct: 193 DTKSYL-VTLHVGSYHHIKELFKALNHEVINLKRVSFANLTVEK-MPEGSYRTLTLKEIK 250 Query: 239 YLRELVELPPET 250 L+ L+ L + Sbjct: 251 DLKVLISLQEKK 262 >UniRef50_C9LMF3 Ribosomal small subunit pseudouridine synthase A n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMF3_9FIRM Length = 277 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 64/263 (24%), Positives = 106/263 (40%), Gaps = 30/263 (11%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L+ G+R E++ I G V V+G+ V +I G + Sbjct: 18 MRLDKFLSDMNMGTRTELKRDIRKGAVQVNGEKITDPG-FMVNENDEIIFAGEPVPYFR- 75 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 KP G + D + TV D + R VGRLD +T GLLL T D Sbjct: 76 ----YEYYMLNKPAGVITATED-RYQKTVLDFFGERRRKDLSPVGRLDKDTVGLLLVTND 130 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAA-FKTIKFSGGEGIN 181 G +RL+ P + +++EY R+ G+VD+A +G+ +++ A + G Sbjct: 131 GGFHHRLLSPKKHIDKEYYARIDGRVDEADREKFEKGIYVDEIFTALPAKLMIDGYRENA 190 Query: 182 ----------------------QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIP 219 V + EG+ +++R++ A+G +V L R+R G + Sbjct: 191 LESDFMDLANSRAPKSALENGVSEIRVVVQEGKFHQIKRMFHALGKEVIYLKRIRIGSVV 250 Query: 220 LPKGLPRGGWTELDLAQTNYLRE 242 L L G + L + L + Sbjct: 251 LDPTLEEGTYRRLTAGEVAALEK 273 >UniRef50_D2MQD6 Pseudouridylate synthase n=1 Tax=Bulleidia extructa W1219 RepID=D2MQD6_9FIRM Length = 231 Score = 243 bits (621), Expect = 5e-63, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 120/241 (49%), Gaps = 12/241 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L +VLA A GSR +++++++ GRVSV+GKIA + IRID ++ Sbjct: 1 MRLDRVLANASVGSRTQVKNMVKNGRVSVNGKIALASSMMVDPNQDVIRIDDEILQY--- 57 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + L YKP G + + PTV + +P +G GRLD +T GLLL T D Sbjct: 58 --AKYQYLMLYKPAGYISAT-EGRYDPTVLELVPNYKG--LFPCGRLDKDTEGLLLMTND 112 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA+ L+ P + VE+EY V + + + RG++ ++ +K Sbjct: 113 GRLAHNLLSPKKHVEKEYYVEHQLPLSQEDVLCIERGIRYKNITYKGAKLKILDDLQCT- 171 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + L EG+ E++ ++ A+ +V+ L R+R ++ L + L +G + L + L++ Sbjct: 172 ---IILQEGKYHEIKNIFLAIDNKVTYLKRIRMKNLILDETLKKGEYRPLSEEEIGDLKQ 228 Query: 243 L 243 L Sbjct: 229 L 229 >UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=C2KPR0_9ACTO Length = 278 Score = 242 bits (619), Expect = 8e-63, Method: Composition-based stats. Identities = 92/244 (37%), Positives = 125/244 (51%), Gaps = 7/244 (2%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +LQK+L++AG SRR E +I+ GRV VDG+ ++V P +I ++G I Sbjct: 42 VRLQKLLSQAGVASRRASEDLIKRGRVQVDGETVTE-MGLKVLPSARITVNGQRI----H 96 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + +V A+ KP G + T + RP + D R VGRLDV T GL+L T + Sbjct: 97 TDAALQVWAFNKPVGTVSTMQPEDDRPCLGD-WATKLPQRVFHVGRLDVATAGLILLTNN 155 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LANRL+HP EV + Y V GQV + L RGV+LEDG T K + Sbjct: 156 GDLANRLVHPRYEVPKTYVAMVQGQVKPGLGKVLRRGVELEDGVTKVDTFKLVEVRRGSS 215 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 +TL G+NR VRRL VG VS L R G + L L G + L + L+E Sbjct: 216 IVQLTLHSGKNRVVRRLLSEVGHPVSALTRTAIGTLRLG-DLKEGHFRLLTGSDLVKLQE 274 Query: 243 LVEL 246 +V L Sbjct: 275 MVGL 278 >UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni RepID=Q04F57_OENOB Length = 237 Score = 242 bits (619), Expect = 8e-63, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 119/242 (49%), Gaps = 11/242 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQK +A+AG SRR+ E +I G+V V+GKI + +V+ + +D I+ Sbjct: 5 ERLQKRIAQAGVASRRKAEEMIVNGQVKVNGKIITKLGK-KVSSDDIVYVDNKKIN---- 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 E+ KP G + + +P+V + + R +VGRLD +T G+LL T D Sbjct: 60 -EESFEYYLLNKPAGYVSSNRSYPNQPSVIELIK--TKTRIFSVGRLDQDTTGVLLLTND 116 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFS--GGEGI 180 GEL +L HP ++R YA V G V++ ++ L++ ++ + + + + Sbjct: 117 GELTQKLTHPKHRIKRTYAAWVKGIVNEDEIEQLTKPIRFDGEIYFPQAARILKVDQKRQ 176 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 +T+ EG+N E++++ + +G V +L R + I + L +G L + + Sbjct: 177 ESLIEITIAEGKNHEIKKILDFIGHPVIKLNRDMFDGITIG-NLKKGQHRALSEQEVEKI 235 Query: 241 RE 242 + Sbjct: 236 KR 237 >UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SBU8_LEPBA Length = 243 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 68/246 (27%), Positives = 106/246 (43%), Gaps = 10/246 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 E+L KVL G G+R +++ I G V V+G + K + + D Sbjct: 3 KERLDKVLGNYGFGTRSDVKKEIYQGNVKVNGLVVKDPGYKITLTDIVVYYD------ET 56 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLR-GARWIAVGRLDVNTCGLLLFT 120 + K + DP TV D L + +GRLD T GLLLFT Sbjct: 57 LNRKEFYYFMMNKAPDCITATEDPR-EKTVMDYLSERHRNMNLFPIGRLDKETEGLLLFT 115 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGEG 179 TDG LA+ P VE+EY + V + G+ L+DG + Sbjct: 116 TDGTLAHYYTSPKHFVEKEYYAEISAPVTAFDISQFESGITLDDGYKTLPARLAIPDPSN 175 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + V L EG+ R++RR+++++G +V L RV+ G++ L + L G + EL A+ Sbjct: 176 PH-IATVWLREGKYRQIRRMFQSLGKEVQYLKRVKMGNLELDRDLEVGSYRELTEAEEKI 234 Query: 240 LRELVE 245 L+ + Sbjct: 235 LKTKIP 240 >UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae RepID=B4RA72_PHEZH Length = 521 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 106/281 (37%), Positives = 154/281 (54%), Gaps = 14/281 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ K+LAR+G GSRR++E +I GRV+++G++ V+V PG + +DG ++ E Sbjct: 151 ERIAKLLARSGVGSRRDVERLIAEGRVAINGQVLTTPA-VKVEPGDILTVDGAVVGEPEP 209 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 RV Y+KP G + T DP+GRPTVF+ LP+ R I+VGRLD+N+ GLLL T D Sbjct: 210 V----RVFRYHKPVGLVTTHKDPQGRPTVFEALPE-GLPRLISVGRLDLNSEGLLLLTND 264 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF----SGGE 178 G LA L P+ V R Y R G++ +L L G+ +E + G + Sbjct: 265 GGLARALELPATGVVRRYRARAHGRITQERLDTLKDGITVEGVRYGAIEARLDKAKEGHQ 324 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 G N W VTL EG+NREVRR+ EA+G++V+RLIR+ YG L L G E+ Sbjct: 325 GANLWLTVTLQEGKNREVRRVLEALGLKVNRLIRLSYGPFALG-TLDVGEIEEVGP---R 380 Query: 239 YLRELVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVS 279 +RE +E + ++ + R A + RRA Q Sbjct: 381 VIREQLEGHIPPENMPKGDRPQYRSPARKSRRAQAESRQAE 421 >UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NDY8_LEPBD Length = 228 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 71/241 (29%), Positives = 121/241 (50%), Gaps = 13/241 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A G SRR+ + +I GRV+V+ A +G ++V P +RIDG + + Sbjct: 1 MRLNKFIAETGFCSRRKADELINEGRVTVNKHEAIIG--MDVKPEDVVRIDGERVKLNTR 58 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 KP+ LC+ D GR D + AR GRLD T GL++ + D Sbjct: 59 ----YEYYILNKPKRVLCSNEDKFGRRLAVDFIK--SRARLFTYGRLDFMTEGLIIISND 112 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GE+ N +MHP +++ + Y +V +++D + L GV ++ A +K + Sbjct: 113 GEVYNHVMHPRKKLYKSYIAKVSREIEDKDIEALQHGVVIDGKRTAPAKVKKIDKKE--- 169 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + + EGRNR++R++ E +G V+ L R++ G++ L L G + L+ + YL+ Sbjct: 170 -LRIAIFEGRNRQIRKMLETLGYNVNSLKRIKVGELTLG-NLQVGEYRALNEDEIKYLKS 227 Query: 243 L 243 L Sbjct: 228 L 228 >UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A5ZYR1_9FIRM Length = 315 Score = 241 bits (615), Expect = 3e-62, Method: Composition-based stats. Identities = 86/303 (28%), Positives = 142/303 (46%), Gaps = 29/303 (9%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + ++ K L+ AG SRRE + + +AGRV+V GK ++G + ++ +DG + Sbjct: 12 TIRINKYLSAAGVCSRREADQLTDAGRVTVAGK--EIGTGERIPADAEVFLDGRPV---- 65 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 AE +L +YKP G +C+ TV + L R VGRLD ++ GLLL T Sbjct: 66 KAETRQVLLLFYKPRGIVCSTKKQRQETTVTEFLD--YPVRVYPVGRLDKDSEGLLLLTN 123 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 G+L NR+M E+EY V V ++ + +R +S GV + T+ +G + Sbjct: 124 QGDLVNRIMRAGNYHEKEYEVTVDKKITETFIRKMSSGVPILGTVTRPCTVYKTGDKS-- 181 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +++ LT+G NR++RR+ E +G V L R+R ++ L GL G + E+ + L Sbjct: 182 --FSIILTQGLNRQIRRMCEYLGYHVCTLKRIRIMNLTLD-GLKCGEYREICGDEWKKLN 238 Query: 242 ELV----------------ELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSG 285 EL+ ++ T+ + E +R R +V RS Sbjct: 239 ELIRDSSSETVIRTGGQHGKISGRTNKRTGAEAERSGKGILSGRPGDHEQQRVRRTVRST 298 Query: 286 GRN 288 G+N Sbjct: 299 GKN 301 >UniRef50_Q0G3T3 Pseudouridine synthase n=4 Tax=Alphaproteobacteria RepID=Q0G3T3_9RHIZ Length = 639 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 100/287 (34%), Positives = 147/287 (51%), Gaps = 12/287 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ + LARAG SRR+ E++I GRV V+GKI ++V P +I +DG L+ Sbjct: 184 MRIARRLARAGIASRRDAEAMIVDGRVKVNGKII-DSPALDVKPTDRIEVDGALL----P 238 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + R+ ++KP G + T DPEGR TVFD LP+ R +++GRLD+NT GLLL T D Sbjct: 239 QAERTRLWLFHKPAGTVTTNKDPEGRRTVFDMLPE-DMPRVLSIGRLDINTEGLLLLTND 297 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G L+ L PS R Y VR G + AKL +L G+ ++ +G N Sbjct: 298 GGLSRVLELPSTGWLRRYRVRAHGSITQAKLDELRNGISVDGVFYGAIEATLDREQGSNV 357 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W + L EG+NREV+ + A+G++V+RLIR+ YG L L G E+ LR+ Sbjct: 358 WITLGLREGKNREVKNVLGALGLEVNRLIRLSYGPFQLG-DLAEGSVREVKG---RTLRD 413 Query: 243 LVELPPETSSKVAVEKD--RRRMKANQIRRAVKRHSQVSGGRRSGGR 287 + + V + + A R R S+ S +GG+ Sbjct: 414 QLGDRLVEEAGVDFDGPINKPFSNAPVEGRQDARPSKKSDWVSAGGK 460 >UniRef50_Q4A5Z2 Pseudouridine synthase n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A5Z2_MYCS5 Length = 234 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 57/244 (23%), Positives = 116/244 (47%), Gaps = 12/244 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M +++K +A + +R EI+ +I G V V+ I K ++ KI ++G L+ R Sbjct: 1 MKIRIEKFIADSTLYTRNEIKKLISKGLVKVNDLIIKKSQSIDPK-LDKIYLEGILLEAR 59 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKL--RGARWIAVGRLDVNTCGLLL 118 + + KP G +C D + VF+ L L + +GRLD++T GLL+ Sbjct: 60 ----EEFSYIMMNKPAGYICANFDW-NKQVVFELLLDLEMNLKDFFTIGRLDIDTEGLLI 114 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG+L++ L+ P + + + Y V + ++ L + + +++ Sbjct: 115 ITNDGKLSHNLLSPKKHIPKTYYVELDKPLEKNIKELLEKELLIDEIKYKK---SILNNI 171 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 N+W +T+ EG+ +++ ++ G +V+ L R++ ++ L + L G + L + + Sbjct: 172 SNNKW-EITIFEGKFHQIKIIFAHFGYKVTYLKRIKMNNLSLDENLKPGEYKFLTKEELD 230 Query: 239 YLRE 242 L+ Sbjct: 231 LLKN 234 >UniRef50_C1XNC4 Pseudouridine synthase n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XNC4_MEIRU Length = 257 Score = 240 bits (613), Expect = 4e-62, Method: Composition-based stats. Identities = 82/250 (32%), Positives = 120/250 (48%), Gaps = 12/250 (4%) Query: 1 MS-EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISV 59 M+ E+L KVL G GSR+EI + AG ++++GKI I + G + Sbjct: 16 MAYERLDKVLGHLGVGSRKEIHRLARAGLITINGKIVADAGFKFDPSQAHIEVAGEPL-- 73 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLR-GARWIAVGRLDVNTCGLLL 118 Q L KP G + + DP G P + LP+ W+ VGRLD +T GLLL Sbjct: 74 ---VYQKFFYLLLNKPAGYITSTKDPSGTP-ITALLPEEFWRNDWMPVGRLDKDTEGLLL 129 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG-VQLEDGPAAFKTIKFSGG 177 TTDGEL +RL HP +V + Y V + + + G ++LE P + Sbjct: 130 LTTDGELLHRLTHPRWKVTKRYYVELASPATPEDVAVFAAGTLELEGEPLQPAELYL--- 186 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 + + L EGR +V+R++ A G QV+ L R+ +G + LP LP G +L + Sbjct: 187 GPDPRKVELVLREGRFHQVKRMFAARGNQVTYLKRLAFGPLQLPPNLPPGASRQLTPDEI 246 Query: 238 NYLRELVELP 247 L E+V LP Sbjct: 247 KALYEVVGLP 256 >UniRef50_Q1YVK2 Pseudouridine synthase n=3 Tax=Gammaproteobacteria RepID=Q1YVK2_9GAMM Length = 235 Score = 240 bits (613), Expect = 4e-62, Method: Composition-based stats. Identities = 67/241 (27%), Positives = 111/241 (46%), Gaps = 13/241 (5%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K ++ A SR E++ I+ G V++D + A G + +V+ I I+G IS E+ Sbjct: 3 RLDKYISNATDLSRVEVKRYIKYGDVTIDDEKAINGAQ-KVSGDETICIEGSAISFAEN- 60 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 R KP G + D T D + + R GRLD++T GLLL T DG Sbjct: 61 ----RYFMLNKPAGVVSATKDS-NNSTALDLIFEHRSDELQIAGRLDIDTTGLLLITDDG 115 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG--PAAFKTIKFSGGEGIN 181 + +RL P + ++ Y V + + L+ GV L+ P T++ E Sbjct: 116 QWNHRLTSPRSDCQKIYRVTLGIPITPDYAEKLANGVWLKGEKHPCLPATMEQIDDE--- 172 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +++ EG+ +V+R++ A+G V L R + G I L + L G + L A+ + Sbjct: 173 -TVLLSIAEGKYHQVKRMFAALGNHVEALHRTQVGGIILDESLEPGDYRALTDAEVASIM 231 Query: 242 E 242 Sbjct: 232 A 232 >UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepID=C7NBL1_LEPBD Length = 252 Score = 240 bits (613), Expect = 4e-62, Method: Composition-based stats. Identities = 68/258 (26%), Positives = 125/258 (48%), Gaps = 24/258 (9%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K LA +G G+R+E++ I++ +VSV+ K G ++ + +I+ + Sbjct: 1 MRLDKFLANSGIGTRKEVKEILKNKKVSVNNVFVKDGKIHVDEEKDIVKYENKIINYK-- 58 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL-PKLRGARWIAVGRLDVNTCGLLLFTT 121 + KP G + D TV D L + R VGRLD++T GL+L T Sbjct: 59 ---PFVYIMMNKPAGVISATEDSH-HKTVIDLLNDEYRTYDIFPVGRLDIDTEGLILLTN 114 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGP-AAFKTIKFSGGEGI 180 DG L++ L+ P + V+++Y V++ + + ++ L G++LE+ ++ Sbjct: 115 DGILSHNLLSPKKHVDKKYYVKITKSLSEDDIKTLENGIKLEENFITKNAKVEIICNNSE 174 Query: 181 NQ----------------WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGL 224 + +T++EG+ +V+R+++AVG +V L RV+ G++ L + L Sbjct: 175 KESEDFDFGENENNKNENSVYITISEGKFHQVKRMFKAVGNEVLYLKRVKMGNLLLDENL 234 Query: 225 PRGGWTELDLAQTNYLRE 242 GG+ EL + N LR Sbjct: 235 ELGGYRELTQKELNGLRN 252 >UniRef50_Q1LJQ9 Pseudouridine synthase n=3 Tax=Burkholderiales RepID=Q1LJQ9_RALME Length = 238 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 112/243 (46%), Gaps = 9/243 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M+ L ++L G G+RR ++ AG V V+G++ + GL++ +DG Sbjct: 1 MATTLDRILQSQGFGTRRYCGDLVAAGLVEVNGELCEDPGARFEVDGLRLMVDGEEWLAC 60 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLF 119 A + KP G C++ P P+V++ LP R AVGRLD +T GLLL Sbjct: 61 TKA-----YVMLNKPTGYECSQR-PRHHPSVYNLLPVPLRQREVQAVGRLDHDTTGLLLL 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG+ + P ++V + Y V F V ++ L GV+L+D P A G Sbjct: 115 TDDGQFIHAQTSPKKQVPKIYEVTTFDPVTPEQVEALRTGVKLDDEP-APIAADACEATG 173 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +TL +G+ +V+R+ AVG V+ L R G + L L G W L Sbjct: 174 ERS-LRLTLLQGKYHQVKRMVAAVGNHVTALHRSAIGGLVLDPALGPGEWRWLTPEDLAA 232 Query: 240 LRE 242 LR+ Sbjct: 233 LRD 235 >UniRef50_B1X5I1 Pseudouridine synthase, Rsu n=1 Tax=Paulinella chromatophora RepID=B1X5I1_PAUCH Length = 242 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 122/239 (51%), Gaps = 8/239 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++LQK++A +G SRR+ E ++ G+V V+G +A LGDR ++ I IDG I + Sbjct: 4 QRLQKLIAISGFCSRRQAEKLLIQGQVRVNGLLAHLGDRA-ISHVDTIEIDGKPIRL--- 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPK--LRGARWIAVGRLDVNTCGLLLFT 120 L KP G + + DP+GRPT+ D +P+ L+ + +GRLD N+ G L+ T Sbjct: 60 -PDNHVTLLINKPTGVISSCQDPQGRPTILDLIPQSILQNRKLHPIGRLDSNSRGALILT 118 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 TDG L L HP ++ Y V V G+ + ++ +G+ L+ + +K Sbjct: 119 TDGSLTMNLSHPRYSHDKAYKVWVEGRPSSSVIKIWQQGIFLDKKMTSRVELKILCKRVT 178 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + + + EGR R++RR +G V L R+ I L LP G W +L+ + + Sbjct: 179 STLLEIVMKEGRKRQIRRTATFLGHPVIDLQRIGIASIRLGS-LPEGRWRKLNSYELSA 236 >UniRef50_UPI0000D52F9C putative ribosomal large subunit pseudouridine synthase B (Pseudouridylate synthase) (Uracil hydrolyase) n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D52F9C Length = 242 Score = 240 bits (612), Expect = 6e-62, Method: Composition-based stats. Identities = 92/241 (38%), Positives = 137/241 (56%), Gaps = 6/241 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +LQK+LARAG+GSRR E II +G+V V+G++AKLG V +I+I + Sbjct: 3 KTRLQKILARAGYGSRRGCEEIISSGKVIVNGEVAKLGC--VVNSDDEIKIGSKKVEF-- 58 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFT 120 + R+ KP G +C++ +++D +PK+ + + VGRLD N+ GL+ FT Sbjct: 59 -IDVQTRLFVLNKPTGVICSKKTEGNLRSIYDLIPKIDNEKNLMIVGRLDANSSGLIFFT 117 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DG L+ + HPS +REY VR G D+ ++ RG+++++ I Sbjct: 118 NDGNLSEFIAHPSNLFDREYLVRARGHFDEEIKENMLRGIKIDNQLLRLSDIVDGDKTNS 177 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N+WY V L GRNRE+R+++E+ G+QVSRL RVR+G I LPKGL G W EL + Sbjct: 178 NRWYTVCLLTGRNREIRKIFESQGLQVSRLKRVRFGPIFLPKGLKEGDWQELKSKDLEKM 237 Query: 241 R 241 Sbjct: 238 Y 238 >UniRef50_A6DF49 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DF49_9BACT Length = 236 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 111/242 (45%), Gaps = 9/242 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A G SRR+ E ++ G ++++ ++R + + + Sbjct: 1 MRIAKFIAACGVCSRRKAEELVNEGHITINNHRVTELSTQVDVDNDEVRYRRKPLVLEKK 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 KP G +CT +DP D LP R VGRLD + GL++ T D Sbjct: 61 L-----YYLLNKPVGYVCTNDDPFAEKKAIDLLPDKG--RLYTVGRLDKPSEGLIVLTND 113 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDL-SRGVQLEDGPAAFKTIKFSGGEGIN 181 G+LA + HPS E+E++Y V V G+V KL L G+ E + Sbjct: 114 GDLAKIMTHPSFELEKKYRVTVKGRVSQKKLDYLVRDGLTFEGVNYRVLDARIKKQVPGG 173 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 N TL EG+NRE+R++ +++ +QV RL R I L K LP G W + ++ +L+ Sbjct: 174 YMINFTLNEGKNREIRKICQSLDLQVKRLRRYEIAGIALGK-LPPGAWRPMTQSEVRFLK 232 Query: 242 EL 243 L Sbjct: 233 SL 234 >UniRef50_D1R854 Pseudouridine synthase n=4 Tax=Chlamydiales RepID=D1R854_9CHLA Length = 261 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 110/241 (45%), Gaps = 11/241 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 ++L KV+A AG SRR E +I G V+V+G++ + + V I G + Sbjct: 32 KQRLSKVMAAAGVASRRACEMLIFDGCVTVNGEVTLVPQTL-VDENDVITCKGQSV---- 86 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 +Q KP G +C+ + V D + R VGRLD +T GL++ T Sbjct: 87 GKKQNKVYYILNKPIGYICSNKRNKDSKIVLDLFDTVE-ERLFTVGRLDKDTSGLIIVTN 145 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG ANR++HPS + +EY V+ +V+ L LS G +E + Sbjct: 146 DGHFANRVIHPSANIHKEYLVKTNEEVEAEHLSALSSGTLVEKTFVRPIRVSKVRRG--- 202 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 +T+ EG+ RE+R L E+ + V L R+R G + L L G W E+ + L Sbjct: 203 -TLKITIAEGKKREIRLLMESAKLPVLELTRIRIGGLHLGP-LQPGEWREMTAREQTLLF 260 Query: 242 E 242 E Sbjct: 261 E 261 >UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BLA3_9BACT Length = 334 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 10/243 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGK-IAKLGDRVEVTPGLKIRIDGHLISVR 60 S +L + ++ +G SRRE + I AG + V+GK + ++G +V ++ + DG +++ Sbjct: 100 SIRLNRYISNSGVCSRREADIFIAAGSIKVNGKAVVEMGYKVALS--DVVSFDGVVLNPE 157 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 + A + KP+ + D + + ++ VGRLD + GLLLFT Sbjct: 158 KRA-----YILLNKPKDFDSSATDASQPKSALGLVANATKSKIKPVGRLDKSASGLLLFT 212 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGEL +L P + Y + + L + +G+ LEDGP I G Sbjct: 213 NDGELQTKLTKPKNGFRKIYHATLSKSLKADDLEKVRKGIVLEDGPVRVHEISNIEGSPA 272 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + +N ++RL++ +G ++ +L RV Y + K LPRG W L + L Sbjct: 273 -TEVGIEILSAKNNIIKRLFDHLGYELIKLDRVVYAGLT-KKDLPRGQWRTLTEQEIINL 330 Query: 241 REL 243 + + Sbjct: 331 KMI 333 >UniRef50_Q21JF0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q21JF0_SACD2 Length = 242 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 75/252 (29%), Positives = 111/252 (44%), Gaps = 25/252 (9%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A SR E++ +I+ V VD KI VT +RIDG +I Sbjct: 1 MRLDKFIANNSSYSRTEVKRLIKNKTVCVDKKITTDPS-FTVTNLNTVRIDGEIIE---- 55 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL------------PKLRGARWIAVGRLD 110 + KP G +C D P V D + PK R GRLD Sbjct: 56 -AIKPLYIMLNKPTGYVCANKDNIHSP-VVDLITEQHARQSDQTPPKYRAQSLQIAGRLD 113 Query: 111 VNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAA-- 168 V+T GL+L T +GE +R+ P++ + Y V++ +DDA ++ LS GV L AA Sbjct: 114 VDTTGLVLLTDNGEWNHRVTSPNKACFKRYRVKLEKPLDDAAIKLLSEGVMLHGEKAATL 173 Query: 169 FKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGG 228 T++ N +++ EGR +V+R++ VG V +L R G I L L G Sbjct: 174 PATVELIS----NTEVLLSIQEGRFHQVKRMFVKVGTCVVKLHREAIGAIELDTNLKPGQ 229 Query: 229 WTELDLAQTNYL 240 W L + + Sbjct: 230 WRHLTNEEIEAI 241 >UniRef50_Q14P18 Pseudouridine synthase n=2 Tax=Mollicutes RepID=Q14P18_SPICI Length = 267 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 65/256 (25%), Positives = 112/256 (43%), Gaps = 11/256 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+LQKV+A G+ SRR+ E +I GR + +V +I + ++ + Sbjct: 2 ERLQKVIAAKGYCSRRKAEELIIQGR-VKVNNVVVTTLGTKVGKNDQI--NNQIL---MN 55 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 L K + T DP+ R TV + + R VGRLD +T GLLL T D Sbjct: 56 ENSNKIYLMLNKRRNCVSTMYDPQHRKTVLTYVKGIS-ERIYPVGRLDYDTSGLLLLTND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAF---KTIKFSGGEG 179 GE N + HPS + + Y V + G + +L+ L+ G+++E G + Sbjct: 115 GEFTNIITHPSHIINKTYHVLLSGYLSKQQLQQLATGIEIEPGIIRSQAQAKLVKYEEVK 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +T+ E +V+++ +++G +V +L R+ G + L + L G W L + Sbjct: 175 NVSILLLTIHEVTKHQVKKMIQSLGHEVIKLKRIAIGFLQLDETLKPGEWRYLKPKEIKR 234 Query: 240 LR-ELVELPPETSSKV 254 + L + + Sbjct: 235 FFWNSITLKNKIKERK 250 >UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales RepID=C5EVC9_9FIRM Length = 294 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 82/268 (30%), Positives = 129/268 (48%), Gaps = 14/268 (5%) Query: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISV---RE 61 L K L++ G SRRE + +IEAG+V VDG A +G +V+ PG K+ DG ++ + Sbjct: 36 LNKWLSQMGVCSRREADRLIEAGKVWVDGSPAAMGQKVK--PGQKVVCDGVPVNGGSGAD 93 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 S + +L KP G +CT +D + + + L R VGRLD ++ GLLL T Sbjct: 94 SRKPKPVLLVVNKPRGIVCTTSDKDRAMNIVEYLD--YPERIYPVGRLDKDSEGLLLMTN 151 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLE--DGPAAFKTIKFSGGEG 179 G+L N++M E+EY V V + D + +++G+ L + +K G+ Sbjct: 152 QGDLVNKIMRSGNAHEKEYIVTVDRPLTDDAMDRMAKGIYLRELETVTRPCKVKRVDGK- 210 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +++ LT+G NR++RR+ EA G V RL+RVR +I L GL G E+ + Sbjct: 211 ---TFSIILTQGLNRQIRRMCEACGCHVERLVRVRIMNIRLD-GLETGASREVGQEEYRE 266 Query: 240 LRELVELPPETSSKVAVEKDRRRMKANQ 267 L L+ + Sbjct: 267 LMRLLRDSSSLPGGRGRAVPHKARTVKD 294 >UniRef50_A3JEU2 Pseudouridine synthase n=2 Tax=Marinobacter RepID=A3JEU2_9ALTE Length = 250 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 58/243 (23%), Positives = 102/243 (41%), Gaps = 12/243 (4%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 + KL ++++ SR++ +I G+V V+ + D +V + ++G + Sbjct: 15 AMKLSRIVSNQPDISRKQANWLIATGQVYVNDLSCRTAD-ADVDEFAAVSVNGKTLQQGH 73 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 A + +KP G L D + PTV LP GRLD T GL++ T Sbjct: 74 CAH----YIMLHKPAGYLSATED-DTHPTVLQLLPPGLSQCLHIAGRLDRATTGLMILTN 128 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGP--AAFKTIKFSGGEG 179 +G + +L P + + Y V + + + G+ E A T++ Sbjct: 129 NGTWSRQLTLPGMGIAKVYRVTTAYPIGPDTPQRFAEGIWFEYEQLTTAPATLELLEP-- 186 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 +T+ EGR +V+R++ AVG +V L R + G + L L G + L ++T Sbjct: 187 --TLARLTIYEGRYHQVKRMFHAVGNRVIALHREQIGHLQLNSDLAEGNFRMLTGSETEG 244 Query: 240 LRE 242 L Sbjct: 245 LNR 247 >UniRef50_D0J9Y2 Pseudouridine synthase n=1 Tax=Blattabacterium sp. (Periplaneta americana) str. BPLAN RepID=D0J9Y2_BLASP Length = 255 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 66/237 (27%), Positives = 110/237 (46%), Gaps = 12/237 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L L+ AG SRRE + +I++G + V+GKI V V I+ G I ++ Sbjct: 16 IRLNHYLSNAGITSRREADKLIQSGLIEVNGKIVTKFGTV-VHKNDVIKFHGSRIKNKKK 74 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + KP+G + + DP R TV + +P + R VGRLD T G+LL T D Sbjct: 75 I-----YILLNKPKGYITSTRDPFNRKTVMNLIPNFQNYRIYPVGRLDRLTTGVLLLTND 129 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRG-VQLEDGPAAFKTIKFSGGEGIN 181 G + +L HP ++++ Y V + + L + +G + L +G + + Sbjct: 130 GFITEKLTHPKYKIQKIYLVVLNKTIHYQDLDKIRQGKIYLNEGRVKIDFLH----KYAK 185 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 + L G NR +RR+++ + QV +L R+ +G K L G W L + + Sbjct: 186 NIVKIGLHIGWNRVIRRIFKKLTYQVIKLERIHFGGFT-NKNLKIGSWCFLSKQEVD 241 >UniRef50_A9AXM1 Pseudouridine synthase n=3 Tax=Bacteria RepID=A9AXM1_HERA2 Length = 728 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 99/278 (35%), Positives = 142/278 (51%), Gaps = 11/278 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+L K LARAG SRR E ++ AGRVSV+G++ + IR+DG I+ Sbjct: 2 ERLHKFLARAGVDSRRACEELMLAGRVSVNGRVQRELGTQIDPDKDDIRVDGEQITPPTE 61 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + +KP + T +DPEGR TV D + R VGRLD ++ GLLL T D Sbjct: 62 LH----YVLLHKPSSVMTTLHDPEGRQTVADLVKSHN--RLFPVGRLDYDSEGLLLLTDD 115 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+L RL HPS EVE+EY + +LR+ GV+L+DG A I+ Sbjct: 116 GDLTFRLTHPSFEVEKEYQALLNQTPSVEQLREWRNGVELDDGKTAPAWIELLNETADGT 175 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W V + EGRNR++RR+ EA+G++V RLIR+R G + L + L G W L + + LR Sbjct: 176 WVRVVIHEGRNRQIRRVAEALGLEVRRLIRLREGPLTLGE-LQAGQWRALTPTEIDRLRM 234 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSG 280 + S + + + + RR V+R + Sbjct: 235 H----GKQSKAWTPVRPQENAEGGKPRRQVRRIDRSGQ 268 >UniRef50_UPI00006CCA31 conserved hypothetical protein n=1 Tax=Tetrahymena thermophila RepID=UPI00006CCA31 Length = 484 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 81/227 (35%), Positives = 125/227 (55%), Gaps = 5/227 (2%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 E+L K L+R+G SRR+ E +I+ G + VDGK+A + VTP I I Sbjct: 175 EERLSKYLSRSGVCSRRQAEKMIKDGLIKVDGKVAT--SNLPVTPKNNIEIFTQRGEKFA 232 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRL---PKLRGARWIAVGRLDVNTCGLLL 118 +Q ++ +YKP G +C+ +DP RP+VF+ + K++ IAVGRLD N+ GL+L Sbjct: 233 PVKQNAKIWIFYKPRGMICSHDDPLKRPSVFNYIYNNTKIKEPHIIAVGRLDYNSEGLIL 292 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DG++A L P + R+Y VRV G++D+ KL L +G + ++ + Sbjct: 293 LTNDGDIAQCLEQPESNIYRQYRVRVQGELDERKLLKLRQGTVINGVQYGPFNVEIDKRQ 352 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLP 225 N W V L G+NRE+R++ + ++VSRL R+ YG + LP Sbjct: 353 SSNTWLTVGLYTGKNREIRKVMQKFDLRVSRLKRLSYGPYKIGSMLP 399 >UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q2NSN0_SODGM Length = 235 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 112/238 (47%), Gaps = 12/238 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K L++ SR + + A RV+VDG+I K G ++ P ++R DG+L+ Sbjct: 1 MRLDKFLSQQLGVSRALVARELRAKRVTVDGEIIKQGA-FQLRPEHQVRFDGNLLHQI-- 57 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R KP+G +C+ +DP+ PT+ + + + A GRLD++T GL+L T D Sbjct: 58 --LTARYFMLNKPQGYVCSTDDPD-HPTILYFIDEPVPDKLHAAGRLDIDTTGLVLLTDD 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG--PAAFKTIKFSGGEGI 180 G+ + RL P E++Y V + + + G+ L P + Sbjct: 115 GQWSYRLTSPRHHCEKDYLVTLEQPLAAEITAQFAAGILLRGEKLPTRPARLATLSPLK- 173 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 +T++EGR +V+R++ AVG +V L R R G I L L G + L + Sbjct: 174 ---VRLTISEGRYHQVKRMFAAVGNRVVALHRERIGAIVLDAHLQPGEYRALTAGEVA 228 >UniRef50_B9E1X9 Pseudouridine synthase n=39 Tax=Clostridium RepID=B9E1X9_CLOK1 Length = 245 Score = 238 bits (607), Expect = 2e-61, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 107/241 (44%), Gaps = 7/241 (2%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M E+L K +A G SRR+ E II GRV V+G + +I +D + Sbjct: 7 MIERLHKYMAACGVASRRKCEHIISEGRVKVNGVVVNKLGTTIDDERDEILVD----NKI 62 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 E + KP G + + D GR T+ D + R +GRLD NT G ++ T Sbjct: 63 IKKENKKVYILLNKPRGYISSVKDDRGRKTLLDIVK--VNERVYPIGRLDYNTSGAIILT 120 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGE+ N + HP + Y + G +++ G+ + A F Sbjct: 121 NDGEVYNNIAHPGSNKSKIYIAAIKGIPSSEEIKRFENGIDIGGYITAKAKFDFISSNKE 180 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + + + EG+NR+VR++ +A+G V L+R+ GDI L L G W L + Y+ Sbjct: 181 SSKVKIEIHEGKNRQVRKMCDAIGHPVITLMRIAIGDIKLG-NLKEGAWRYLTEKEIQYI 239 Query: 241 R 241 + Sbjct: 240 K 240 >UniRef50_A7VSS7 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A7VSS7_9CLOT Length = 256 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 114/242 (47%), Gaps = 9/242 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+L K+L+ G GSR+E +I G V V+G +A + +I I+G + + Sbjct: 6 ERLDKILSSQGVGSRKEAGILIRRGLVHVNGILATRPETKTDPERDQITIEGKPLRFQRH 65 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR-WIAVGRLDVNTCGLLLFTT 121 L KP G + D TV D +P + R GRLD +T GLL+ T Sbjct: 66 -----VYLMMNKPAGVVSASRDSR-EKTVVDLVPPVLSRRDLFPAGRLDRDTTGLLILTD 119 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDG-PAAFKTIKFSGGEGI 180 DGELA+R++ P + V + Y V G V ++ + GV LEDG + Sbjct: 120 DGELAHRMLSPKKHVYKLYEASVDGPVGAEEIEKFAAGVALEDGTVCLPAGLTVVKQGTA 179 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 + V + EG+ +V++++ AVG +V RL RVR G + L K L G EL + + Sbjct: 180 WETL-VEIREGKFHQVKKMFLAVGRRVLRLKRVRIGGLELDKTLKEGECRELTKEELALI 238 Query: 241 RE 242 + Sbjct: 239 FQ 240 >UniRef50_C0QWY7 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QWY7_BRAHW Length = 229 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 114/240 (47%), Gaps = 14/240 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L K +A SRRE + +I+ G V V+G I +V KI E Sbjct: 1 MRLNKYIASLNLASRREADRLIQNGNVKVNG-IINTNPATQVDENDKIE------CSIEQ 53 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 ++ + KP G + + N EG+P +++ + K VGRLD ++ GL+LFT D Sbjct: 54 YKENKIYIKLNKPRGYVVSSNKNEGKP-IYNLIKK-DFDNIYPVGRLDKDSSGLILFTND 111 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G A +++ + E+EY VRV + D L+ L G+ L+ +K Sbjct: 112 GVFAKQIIGENTNCEKEYYVRVDDNIPDGALQKLEYGISLDGQKLKPAKVKRVNKNS--- 168 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 +++ LTEG+NR++RR+ + VG +V L R+R I L + L G + L + + + Sbjct: 169 -FHIILTEGKNRQIRRMCQKVGFEVIILKRLRISGILL-EDLKEGTFKSLTKEEIESILK 226 >UniRef50_Q73PD9 Pseudouridine synthase n=1 Tax=Treponema denticola RepID=Q73PD9_TREDE Length = 245 Score = 236 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 62/250 (24%), Positives = 119/250 (47%), Gaps = 14/250 (5%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M +L ++LA +G GSR +++ +I VDG + T KI IDG + +R Sbjct: 1 MKTRLDRILALSGLGSRSDVKKMIRKKNCCVDGVRIVSPSFILDTDLNKITIDGEPLVLR 60 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLP-KLRGARWIAVGRLDVNTCGLLLF 119 + L + KP+G + + +DP TV D + +GRLD++T GLL+ Sbjct: 61 TN-----VYLMFNKPQGCVTSTSDP-VHKTVMDYIKAPFDRMTLFPIGRLDIDTEGLLII 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRD----LSRGVQLEDG-PAAFKTIKF 174 T DGE+ +++ P + Y + + + D + ++ +G+ L++G + Sbjct: 115 TDDGEITHKITSPKSGTVKTYYLELSREPSDEEFKNYCEEFEKGIVLKNGYKCLPAKFEK 174 Query: 175 SGGEGIN--QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTEL 232 + + + + +TEG+ +V+++ + G ++ L R+ G I L + L G + EL Sbjct: 175 CENKTGSFRSGFLMHITEGKFHQVKKMCLSAGNELCYLRRIAVGSIVLDETLKTGEYREL 234 Query: 233 DLAQTNYLRE 242 + + LR+ Sbjct: 235 SAEEIDSLRD 244 >UniRef50_A5IXL5 Pseudouridine synthase n=3 Tax=Mycoplasma RepID=A5IXL5_MYCAP Length = 246 Score = 236 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 77/248 (31%), Positives = 135/248 (54%), Gaps = 12/248 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++QK++A++G SRR+ E +I G V V+G + +GD+ + +I+++G +I++ ++ Sbjct: 5 VRVQKLIAQSGLMSRRDAEKMISKGLVFVNGIKSSIGDKASM--NDEIKVNGKIINLTKN 62 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + + KP+ + T DP+GR TV D + R + VGRLD NT G+LL TTD Sbjct: 63 --TVFKYYLLNKPKNTITTSKDPKGRHTVIDLI--NTSERIVPVGRLDRNTTGVLLLTTD 118 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 EL N+L HP E+ER Y R+ + + R+L+ G++++ + + Sbjct: 119 YELVNKLTHPKYEIERVYRARIDSPLTLKEFRELNAGIEIDGK----MSYQIVDQVDTKS 174 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 + ++L G V++L+E +G V L RV Y ++ + K LP G + EL + + L+ Sbjct: 175 YL-ISLHVGSYHHVKKLFEKIGHSVLTLKRVSYANLTVDK-LPEGMYRELTIKEVKNLKL 232 Query: 243 LVELPPET 250 LVE + Sbjct: 233 LVEQQEKK 240 >UniRef50_Q13BM8 Pseudouridine synthase n=55 Tax=Alphaproteobacteria RepID=Q13BM8_RHOPS Length = 795 Score = 236 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 97/283 (34%), Positives = 141/283 (49%), Gaps = 10/283 (3%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 ++ KV+ARAG SRR+ E+ I GRV+V+G++ ++VT I +DG + R Sbjct: 477 RIAKVVARAGLCSRRDAEAWIVEGRVAVNGRVI-DSPALDVTYSDVITVDGKPLPER--- 532 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + R+ Y+KP G + T DPEGRPTVFD LP+ R I++GRLD NT GLLL T DG Sbjct: 533 -ERTRLFLYHKPRGLMTTHADPEGRPTVFDNLPE-DLPRLISIGRLDFNTEGLLLLTNDG 590 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 LA L P R Y VR G+V A+L L+ GV+++ K +G N W Sbjct: 591 GLARALELPETGWLRRYRVRAHGEVTQAQLDQLASGVEVDGVKYGPIEAKLERDQGANVW 650 Query: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLREL 243 + EG+NREVR + +G++V+RLIRV YG L + + G E+ LRE Sbjct: 651 LVFAIREGKNREVRNVLAHLGLEVNRLIRVSYGPFQLLE-IEEGQVEEVKT---RVLREQ 706 Query: 244 VELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGG 286 + ++ + R ++ + Sbjct: 707 LGEKIIKLAEADFGGPSPSETRPKPRPGKPVAAEDGPAPKKKA 749 >UniRef50_Q1RJR2 Uncharacterized RNA pseudouridine synthase RBE_0321 n=15 Tax=Rickettsia RepID=Y321_RICBR Length = 229 Score = 236 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 82/233 (35%), Positives = 130/233 (55%), Gaps = 9/233 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++L K+++ AG SRR+ E +I G+V V+G I V ++ + G LI+ + Sbjct: 2 QRLAKLISNAGICSRRDAEKLILDGQVKVNGIIVT-SPATNVDTDNQVEVSGSLITSSQK 60 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + R+ YYKP G + T DP R TVF++L L R I++GRLD+N+ GLLL T + Sbjct: 61 S----RLWIYYKPVGLITTHKDPLSRKTVFEQLTGL--PRVISIGRLDLNSEGLLLLTNN 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+LA + PS +++R Y VR +G D L+ + ++++ ++IK N Sbjct: 115 GDLARQFELPSSKLKRVYHVRAYGNPDP-LLKSNYKNLEIDGIFYNPQSIKLLRKNSTNS 173 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLA 235 W V L EG+NRE+RR++E G++V++LIR YGD L L + E+ Sbjct: 174 WLEVILFEGKNREIRRIFEHFGLKVNKLIRTEYGDFKLD-NLKPNEYREVTKK 225 >UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSS4_9BACT Length = 451 Score = 236 bits (603), Expect = 6e-61, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 115/240 (47%), Gaps = 9/240 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +L + +A++G SRRE + I+AG + +V P +++ + + + Sbjct: 216 EIRLNRFIAQSGICSRREADDFIQAGL-VTVNGVVVTTLGTKVQPTDEVKFNDSRVEGEK 274 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTT 121 L KP+G + + +DP TV + + R VGRLD N+ GLLLFT Sbjct: 275 K-----VYLVLNKPKGYVTSLDDPHADKTVMELVKDACTERIYPVGRLDKNSVGLLLFTN 329 Query: 122 DGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGIN 181 DG+L +L HPS + ++ Y V + + A + +++G+ LEDG I + + Sbjct: 330 DGDLTRQLTHPSFQKKKIYQVSLDKPLTKADMEQIAQGITLEDGEIYADEIAYVKEDK-- 387 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + GRNR VRR++E +G V +L RV Y + K L RG W L + L+ Sbjct: 388 TEVGIEIHSGRNRIVRRIFEHLGYAVKKLDRVYYAGLS-KKNLKRGQWRFLTREEVQRLK 446 >UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepID=B6W7S5_9FIRM Length = 231 Score = 236 bits (603), Expect = 6e-61, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 12/242 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 ++ K +A+AG SRR+ E I+ G V V+GK +V ++++ G L+ ++E Sbjct: 1 MRINKYIAKAGLASRRKSEEYIKKGLVFVNGKKLDDLS-YQVKENDQVKVMGKLLEIKEK 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 KP G + + DP + + + R+ GRLD ++ GL+L T D Sbjct: 60 -----FYYKLNKPIGFISSNYDPHNKKDLNSLVKIDH--RFFCAGRLDKDSHGLMLITND 112 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLE-DGPAAFKTIKFSGGEGIN 181 G++ N+L+HPS+++E+ Y V+V ++ +G++L + + I Sbjct: 113 GKITNKLIHPSKKIEKTYIVKVDKLLNKDDEALFRKGIKLSVNEKTSDAKINLIDENSK- 171 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 Y V + +G NR+VRR++ G +V L R++ G I L K L G + +L+ + YL Sbjct: 172 -IYEVIIHQGFNRQVRRMFLYFGSKVIDLKRIKIGQIELGK-LEDGKYKKLNKKELEYLE 229 Query: 242 EL 243 L Sbjct: 230 SL 231 >UniRef50_C9LMR9 Pseudouridine synthase n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMR9_9FIRM Length = 239 Score = 236 bits (602), Expect = 8e-61, Method: Composition-based stats. Identities = 87/246 (35%), Positives = 131/246 (53%), Gaps = 12/246 (4%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISV 59 M E+LQK+L+ AG SRR+ E +I AGRV V+G++ +LG +V KI G ++ Sbjct: 1 MKERLQKILSHAGVCSRRKAEELILAGRVRVNGRVVRELGTEADVC-TDKIEALGEIVKP 59 Query: 60 RESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLF 119 + R ++KP+ + + +DP GR TV D ++R R VGRLD ++ GLLL Sbjct: 60 -----EPLRYYLFHKPDCVITSVSDPAGRRTVMDYFRRVR-ERVFPVGRLDYHSEGLLLV 113 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFS--GG 177 T DG+L L HP EV++EY V V G+ + + + +GV+++ G A I+ Sbjct: 114 TNDGQLDFILTHPCHEVQKEYEVVVRGKFSEKLAKKMEKGVKIDSGVTAPCEIEVLGYDA 173 Query: 178 EGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 E + L EG+NRE+R++ E V L R+RY + L RG + L A+ Sbjct: 174 EKNKTRLRMVLHEGKNREIRKMMEIFHYPVFELKRIRYSFLTLDVN--RGQYRRLTAAEV 231 Query: 238 NYLREL 243 L EL Sbjct: 232 KKLYEL 237 >UniRef50_B0B8U9 Pseudouridine synthase n=10 Tax=Chlamydiales RepID=B0B8U9_CHLT2 Length = 241 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 110/239 (46%), Gaps = 12/239 (5%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +L K LA AG SRR+ + II AG V+V+G++A + + G I + Sbjct: 3 KVRLNKFLASAGVASRRKCDEIIFAGSVTVNGRVATGPFVTVDEEFDSVEVGGQRIGAEK 62 Query: 62 SAEQICRVLAYYKPEGELCTRNDPE-GRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFT 120 +KP G LC+ G V D L R VGRLD T GL+L T Sbjct: 63 K-----VYFMVHKPLGYLCSSERKFPGSKLVIDLLSH-CPYRLFTVGRLDKETSGLILVT 116 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGE ANR++HPS + +EY ++V V L L G ++ ++K Sbjct: 117 NDGEFANRVIHPSFGITKEYLLKVSRDVTARDLETLMAGTVIDGKVVRPVSVKKVRRG-- 174 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 + + EG+ E+R EA G+Q+ L R+R G + L GLP G + EL ++ + Sbjct: 175 --TIKIIVNEGKKHEIRLFAEAAGLQLLELKRIRIGSLVLG-GLPYGKYRELTDSELDS 230 >UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P160_ERYRH Length = 262 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 63/244 (25%), Positives = 124/244 (50%), Gaps = 12/244 (4%) Query: 4 KLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRESA 63 +L K ++ +G+ SRR+ + I G V++DG A +G +V PG ++ ++G+ +++ Sbjct: 27 RLNKYISDSGYCSRRQADRFIAEGVVAIDGVTATVGQQV--LPGQRVTVEGNHVTI---- 80 Query: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 + +A KP G CT D + D + +GRLD ++ GL+L T DG Sbjct: 81 DDEKVYIALNKPRGITCTT-DGAIEGNISDFM--NYPKMIFPIGRLDKDSSGLILLTNDG 137 Query: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKF--SGGEGIN 181 ++ N+++ ++EY V V +D+ + +S+GV++ + + + Sbjct: 138 DIVNKILREEYGHDKEYIVSVNKTIDEDFITKMSKGVEIYNQQTHRMQVTNPSDVEQVAP 197 Query: 182 QWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLR 241 + + + L +G NR++RR+ +A+G +V+ L RVR +I L L G W L + + + Sbjct: 198 KTFRIVLNQGLNRQIRRMTKALGFKVTTLNRVRIMNINLG-DLKVGEWRYLSVHELEEMN 256 Query: 242 ELVE 245 ++ Sbjct: 257 RRIQ 260 >UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1S2_9BACT Length = 241 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 85/245 (34%), Positives = 120/245 (48%), Gaps = 10/245 (4%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E+L K+L+ AG SRR +I+AGRV+V+G+ V PG ++ DG + Sbjct: 7 ERLVKILSAAGIASRRGAGDLIKAGRVTVNGETV-FEPGFRVAPGDRVEYDGVPV----L 61 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 AE+ + KP G +CT DP D + R + GRLD ++ GL+LF+ D Sbjct: 62 AEERKVYIMLNKPRGYVCTNADPHADLKAVDLIRLTPPLRLFSAGRLDKDSEGLILFSND 121 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G+ RL HP E+ + Y VRV + A+L + RGV + G Sbjct: 122 GDYVARLTHPRHEILKVYQVRVRREFKPAELEQMRRGVLERGELLKVHAVSRCGD----C 177 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 Y +TL EG+NRE+RRL A+G RL R++ G + L GLP G W EL A+ Sbjct: 178 TYLITLNEGKNREIRRLTAALGSPTRRLKRLQIGALRLG-GLPVGNWRELTPAEIALTLR 236 Query: 243 LVELP 247 E P Sbjct: 237 SGEQP 241 >UniRef50_A8SIK9 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SIK9_9FIRM Length = 235 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 59/243 (24%), Positives = 109/243 (44%), Gaps = 9/243 (3%) Query: 1 MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVR 60 M ++ + L G GSR EI+ ++ RV ++GK K + +I D ++ Sbjct: 1 MKIRIDRFLCHMGIGSRSEIKKYLKTCRVKLNGKFEKNSNTQVDIEKDEILFDDEIV--- 57 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLP-KLRGARWIAVGRLDVNTCGLLLF 119 + L KP+ + D + PTV D L VGRLD++T G L+ Sbjct: 58 --IYKEFTYLMLNKPKDFISATFDTK-LPTVLDLLEFPYSNMELFPVGRLDIDTTGFLIL 114 Query: 120 TTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEG 179 T DG+ + + +P ++V ++Y V + ++ ++ L G+ E + K Sbjct: 115 TNDGKFSYNVTNPKKKVNKKYFVTLRDEIISEQIEKLENGIYFEKEDFTTENAKVEKISE 174 Query: 180 INQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNY 239 N+T++EG+ +V+R+ E V +V L +V G++ L L G + E+ ++ Sbjct: 175 KE--INLTISEGKFHQVKRMLEYVENEVVELKKVCIGNLNLDDSLKLGEYREITNSELEE 232 Query: 240 LRE 242 + Sbjct: 233 IFR 235 >UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A n=25 Tax=Gammaproteobacteria RepID=RSUA_PSEAE Length = 230 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 110/237 (46%), Gaps = 12/237 (5%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +L + LA SRR+ + +I G + VDG++ + G EV ++ +D L+ + Sbjct: 1 MRLDRFLANLPELSRRDAQMLIAGGHLRVDGQVVRDG-THEVRVFSRVELDERLLQAGKP 59 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 A R +KP G + DP+ PTV D P+ GRLD NT GL+L T D Sbjct: 60 A----RYYMLHKPMGCVSATRDPQ-HPTVLDLFPEDLRDDLHIGGRLDYNTTGLMLLTND 114 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGV--QLEDGPAAFKTIKFSGGEGI 180 G+ + RL P ++ Y V +D + + G+ + ED ++ G Sbjct: 115 GQWSRRLTLPGSRRDKVYYVETEAPIDQRYVDAFAAGLHFRFEDLVTLPAQLEPIGP--- 171 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQT 237 + +TL EGR +V+R++ +V RL R R GDI L LP G W L+ + Sbjct: 172 -RCARLTLHEGRYHQVKRMFGHFDNKVLRLHRERMGDICLDPQLPPGAWRPLNAEEI 227 >UniRef50_O05668 Uncharacterized RNA pseudouridine synthase ML1370 n=49 Tax=Actinomycetales RepID=Y1370_MYCLE Length = 256 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 122/248 (49%), Gaps = 9/248 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIA-KLGDRVEVTPGLKIRIDGHLISVR 60 + +LQK+L+RAG SRR E +I GRV VDG++ +LG RV+ + + V+ Sbjct: 15 AVRLQKILSRAGIASRRAAEKLIIEGRVEVDGQLVRELGTRVDPDVSVV-----RVDGVK 69 Query: 61 ESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKL--RGARWIAVGRLDVNTCGLLL 118 + LA KP G T +D GRP V D + + + VGRLD +T GL+L Sbjct: 70 VVVDDSLVYLALNKPRGMYSTMSDDRGRPCVGDLIERRVRGNKKLFHVGRLDADTEGLIL 129 Query: 119 FTTDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGE 178 T DGELA+RLMHPS EV + Y V G V + LS G++L+DGPA Sbjct: 130 LTNDGELAHRLMHPSHEVSKTYLATVKGAVPRGLGKKLSVGLELDDGPAHVDDFAVVDAI 189 Query: 179 GINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTN 238 +TL EGR R VRRL A G V L+R G + L G L + Sbjct: 190 PGKTLVRLTLHEGRKRIVRRLLTAAGFPVEMLVRTDIGAVSLG-DQRPGCLRALLRDEIR 248 Query: 239 YLRELVEL 246 L + V L Sbjct: 249 QLYKEVGL 256 >UniRef50_Q8T866 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q8T866_DICDI Length = 401 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 91/273 (33%), Positives = 139/273 (50%), Gaps = 9/273 (3%) Query: 2 SEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRE 61 +E++QK+LARAG SRR+ E +I GRV V+GKI K+ + + V P I +D I V Sbjct: 137 TERIQKILARAGIASRRKAEELIIDGRVKVNGKIIKM-EEILVKPHDIITVDDKPIKV-- 193 Query: 62 SAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRG-ARWIAVGRLDVNTCGLLLFT 120 ++ ++K L + DP+GR + + K+ G I+VGRLD T GL+LFT Sbjct: 194 ---DKPKIWMHFKNPQVLTSEYDPDGRDCLLPIIRKVIGIDHLISVGRLDYYTEGLILFT 250 Query: 121 TDGELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGI 180 DGELA L P R Y VR+FG+ D L++G+ + + +++ Sbjct: 251 NDGELARYLTLPQNLFFRVYKVRIFGKFTDEMKFSLAKGMVINEVFYRPVSVQVESETDS 310 Query: 181 NQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 N W +TL EG+ RE+R L E V+V RLIRV YG LP L G E+ + + L Sbjct: 311 NTWLRITLQEGKKREIRTLLEYFNVKVLRLIRVAYGPYVLPNSLKHGETIEVPIK--DEL 368 Query: 241 RELVELPPETSSKVAVEKDRRRMKANQIRRAVK 273 + + T +++++++ K Sbjct: 369 KPFINKYNSTERLKKTLQEQKKIENFNKNNVNK 401 >UniRef50_C6XHY6 Pseudouridine synthase n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XHY6_LIBAP Length = 354 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 97/270 (35%), Positives = 141/270 (52%), Gaps = 10/270 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 +++ KV+ARAG SRRE+E +I RV V+G + + V V I +DG + Sbjct: 14 QRVSKVIARAGIASRREVERMIAQQRVKVNGILLER-AAVNVMSTDHIEVDGVPLR---- 68 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 + R+ Y+KP G + T +DP+GR TVFD LP + +R I+VGRLD+NT GLLL T D Sbjct: 69 KAERTRLWLYHKPIGLVTTHSDPDGRSTVFDNLPSIF-SRVISVGRLDINTEGLLLLTND 127 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 G LA L PS + R Y VR GQVD KL L +G+ ++ + +G N Sbjct: 128 GGLARVLELPSTQWLRVYRVRFHGQVDQDKLNLLKKGIVIQGICYGDMQVTLDTQKGSNA 187 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W V L EG+NRE+++++E +V+RLIR+ YG L L G E+ LRE Sbjct: 188 WVTVGLREGKNREIKKVFEFFNWKVNRLIRISYGPFQLGTLLA-GSTREVSK---KILRE 243 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAV 272 + ++V ++ + R Sbjct: 244 QLGPHLLEEAQVNLDAPIYSSETLVRDRPN 273 >UniRef50_C6XQT2 Pseudouridine synthase n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XQT2_HIRBI Length = 508 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 102/288 (35%), Positives = 148/288 (51%), Gaps = 9/288 (3%) Query: 3 EKLQKVLARAGHGSRREIESIIEAGRVSVDGKIAKLGDRVEVTPGLKIRIDGHLISVRES 62 E++ K LA AG SRRE E +IE G V+V+G++ +VT KI ++G + + Sbjct: 34 ERIAKWLAAAGVCSRREAERLIEEGLVAVNGQVL-DSAAFKVTGNEKITVEGKRVGGPDK 92 Query: 63 AEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTD 122 R+ ++KP+G + T +DPEGRPTVF+ LPK + R + +GRLD+NT GLLL T D Sbjct: 93 ----TRLWRFHKPKGLVTTNSDPEGRPTVFEHLPK-KLPRVMTIGRLDLNTEGLLLLTND 147 Query: 123 GELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQ 182 GELA L P+ ++R Y R FG++ A+L L GV E +G N Sbjct: 148 GELARTLELPTTGLKRCYRARAFGKITQAELDKLQEGVLFEGVVYRSIIATLDKTKGDNN 207 Query: 183 WYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYLRE 242 W ++TLTEG+ RE RR E+VG+ V+RLIRV YG L L GG E+ + L E Sbjct: 208 WIDMTLTEGKKREARRALESVGLIVNRLIRVSYGPFELG-DLVEGGVAEIPAGEL--LSE 264 Query: 243 LVELPPETSSKVAVEKDRRRMKANQIRRAVKRHSQVSGGRRSGGRNNN 290 + + ++ + RR K + + + Sbjct: 265 FGDSISRKRRPDPASVPQSYLEPDTKRRRTKGRDEDTSQTAPAKKPAA 312 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.166 0.478 Lambda K H 0.267 0.0506 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,097,955,353 Number of Sequences: 3077464 Number of extensions: 106670897 Number of successful extensions: 361053 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2006 Number of HSP's successfully gapped in prelim test: 1836 Number of HSP's that attempted gapping in prelim test: 349746 Number of HSP's gapped (non-prelim): 4469 length of query: 291 length of database: 1,040,396,356 effective HSP length: 127 effective length of query: 164 effective length of database: 649,558,428 effective search space: 106527582192 effective search space used: 106527582192 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 93 (40.1 bits)