BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (326 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P35272 Chain length determinant protein n=110 Tax=Enter... 613 e-174 UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmon... 449 e-125 UniRef50_UPI000197C816 regulator of length of O-antigen componen... 110 5e-23 UniRef50_D0Z7Z5 Chain length determinant protein n=1 Tax=Edwards... 110 6e-23 UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=1... 109 1e-22 UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Pr... 107 5e-22 UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0... 107 8e-22 UniRef50_P26266 Ferric enterobactin transport protein fepE n=158... 104 3e-21 UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropn... 103 8e-21 UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Provide... 97 6e-19 UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=... 96 1e-18 UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 T... 95 3e-18 UniRef50_UPI0001C34705 lipopolysaccharide biosynthesis protein n... 95 4e-18 UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photoba... 94 6e-18 UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 T... 90 8e-17 UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C... 90 1e-16 UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enter... 89 2e-16 UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannhei... 89 2e-16 UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycete... 87 6e-16 UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 87 1e-15 UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersini... 86 1e-15 UniRef50_A7JUL8 O-antigen chain length determining protein n=2 T... 86 1e-15 UniRef50_UPI000197BC0B ferric enterobactin transport protein Fep... 83 1e-14 UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aerom... 83 1e-14 UniRef50_A5KZS4 Regulator of length of O-antigen component of li... 81 4e-14 UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae Re... 74 9e-12 UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=En... 73 2e-11 UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio ... 72 3e-11 UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 T... 71 6e-11 UniRef50_C9P0E2 Regulator of length of O-antigen component of li... 70 7e-11 UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10... 70 1e-10 UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yers... 68 3e-10 UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 T... 66 2e-09 UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n... 58 5e-07 UniRef50_P44063 Uncharacterized protein HI0866 n=7 Tax=Haemophil... 58 5e-07 UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuni... 57 1e-06 UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Ph... 54 8e-06 UniRef50_Q8KN75 Wzz n=1 Tax=Pseudomonas aeruginosa RepID=Q8KN75_... 52 4e-05 UniRef50_C3K6I8 Conserved hypothetical chain length determinant ... 50 1e-04 UniRef50_Q31F07 Lipopolysaccharide biosynthesis protein Wzz n=1 ... 49 3e-04 UniRef50_Q8KNB4 Wzz n=2 Tax=Pseudomonas aeruginosa RepID=Q8KNB4_... 48 4e-04 UniRef50_Q02PW5 O-antigen chain length regulator n=19 Tax=Pseudo... 48 4e-04 UniRef50_Q0FE97 OtnB protein n=1 Tax=Rhodobacterales bacterium H... 48 5e-04 UniRef50_A1SRR6 Chain length determinant protein-like protein n=... 47 6e-04 UniRef50_A4C8G6 OtnB protein n=1 Tax=Pseudoalteromonas tunicata ... 47 6e-04 UniRef50_C9P0B3 Lipopolysaccharide biosynthesis n=1 Tax=Vibrio c... 47 7e-04 UniRef50_A7I0H6 Chain length determinant protein n=1 Tax=Campylo... 46 0.002 UniRef50_C4K3Z7 Regulator of length of O-antigen component of li... 44 0.008 UniRef50_A5UI14 Putative uncharacterized protein n=2 Tax=Haemoph... 42 0.029 >UniRef50_P35272 Chain length determinant protein n=110 Tax=Enterobacteriaceae RepID=WZZB3_ECOLX Length = 325 Score = 613 bits (1580), Expect = e-174, Method: Compositional matrix adjust. Identities = 315/326 (96%), Positives = 320/326 (98%), Gaps = 1/326 (0%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA Sbjct: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLT 120 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEE EKLT Sbjct: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEPEKLT 120 Query: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD 180 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD Sbjct: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD 180 Query: 181 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESM 240 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQT +D+TQDT+FLLGSEALESM Sbjct: 181 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQT-QDVTQDTMFLLGSEALESM 239 Query: 241 IKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLI 300 IKHEATRPLVFS NYYQTRQNLLDI++L VD LDIHAYRYVMKP LPIRRDSPKKAITLI Sbjct: 240 IKHEATRPLVFSSNYYQTRQNLLDIDNLDVDKLDIHAYRYVMKPTLPIRRDSPKKAITLI 299 Query: 301 LAVLLGGMVGAGIVLGRNALRNYNAK 326 LAVLLGGMVGAGIVLGRNALRNYNAK Sbjct: 300 LAVLLGGMVGAGIVLGRNALRNYNAK 325 >UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmonella enterica RepID=WZZB_SALTY Length = 327 Score = 449 bits (1156), Expect = e-125, Method: Compositional matrix adjust. Identities = 230/326 (70%), Positives = 279/326 (85%), Gaps = 1/326 (0%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M V++N SG+ +DPEQIDLI+LL+QLWRGKMTII++VI+AI LA+GYL +AKEKWTSTA Sbjct: 1 MTVDSNTSSGRGNDPEQIDLIELLLQLWRGKMTIIVAVIIAILLAVGYLMIAKEKWTSTA 60 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLT 120 IITQPD Q+A Y NA+NV+YG APK+S++Q I RFSSAFSAL+E LDNQ+EREKLT Sbjct: 61 IITQPDAAQVATYTNALNVLYGGNAPKISEVQANFISRFSSAFSALSEVLDNQKEREKLT 120 Query: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD 180 IE SVK Q LPL+VSYV TAEGAQ +LA+YIQQVD++V +ELE DLKDNI L K LQ+ Sbjct: 121 IEQSVKGQALPLSVSYVSTTAEGAQRRLAEYIQQVDEEVAKELEVDLKDNITLQTKTLQE 180 Query: 181 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESM 240 SL TQEVVAQEQKDLRI+QI+EAL+YA++A++T+ Q +D+TQDT+FLLGS+AL+SM Sbjct: 181 SLETQEVVAQEQKDLRIKQIEEALRYADEAKITQ-PQIQQTQDVTQDTMFLLGSDALKSM 239 Query: 241 IKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLI 300 I++EATRPLVFSP YYQT+Q LLDI++LKV +H YRYVMKP LP+RRDSPK AITL+ Sbjct: 240 IQNEATRPLVFSPAYYQTKQTLLDIKNLKVTADTVHVYRYVMKPTLPVRRDSPKTAITLV 299 Query: 301 LAVLLGGMVGAGIVLGRNALRNYNAK 326 LAVLLGGM+GAGIVLGRNALR+Y K Sbjct: 300 LAVLLGGMIGAGIVLGRNALRSYKPK 325 >UniRef50_UPI000197C816 regulator of length of O-antigen component of lipopolysaccharide chains n=2 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C816 Length = 332 Score = 110 bits (276), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 82/290 (28%), Positives = 150/290 (51%), Gaps = 2/290 (0%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 ++IDL L QLW K TIII +IV I + YL AK KWTS A+I+ P++GQ++ Y Sbjct: 11 DEIDLFHLANQLWVNKKTIIIFIIVFIFMGCVYLVFAKPKWTSQALISLPEIGQLSNYPT 70 Query: 76 AMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVS 135 A+++ +A + +L + + F A + D +++ + S +S Sbjct: 71 AVSLSLN-SADNMGTYDMSLPTKVFNLFLANVDA-DIVKDKSNTPLSISKPKDANYYILS 128 Query: 136 YVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDL 195 A+ AQ++L +++ ++ K L + + ++ + L ++ E A+++K Sbjct: 129 LSASNAKLAQLELTEWLNFLNKKTQSRLYQAIWQSLEQRKSQLLQQIKAFETSAKDKKQQ 188 Query: 196 RIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNY 255 R+ ++ AL+ A Q+ +I+Q I D LF++G+ AL ++I+ E PL F P Y Sbjct: 189 RLTLLESALKIAQDTQLNVNEIKQLPNIIPDDALFMMGAPALNALIQQEKEWPLTFDPRY 248 Query: 256 YQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLL 305 + T+ L I S ++ + A + P L + R+SPK + L+L+++L Sbjct: 249 FDTQVQLSLISSFQLKEQGFDAINIISPPSLALHRESPKVTLILVLSIML 298 >UniRef50_D0Z7Z5 Chain length determinant protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0Z7Z5_EDWTE Length = 317 Score = 110 bits (275), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 86/321 (26%), Positives = 165/321 (51%), Gaps = 19/321 (5%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 NH ++IDL+D++ QLW+GK+ + I+ +A+A Y+ + KWT+ + +++P + Q+A Sbjct: 7 NHVNDEIDLLDIIRQLWQGKVIVFCVSIMFLAIAGLYIMLTTPKWTAESTLSKPYLNQLA 66 Query: 72 GY------NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALA--ETLDNQEEREKLTIEP 123 Y + + G AP + D + T G + F A+A + L + ++I P Sbjct: 67 NYPAGVMLSQVWTMNDGDNAPVIDDAKIT--GNVFNTFIAMANAQILSGMD----ISIRP 120 Query: 124 SVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLR 183 + VS A+ L + + D ++L+ + ++ +L+ ++ Sbjct: 121 GTTAETF--IVSSTANDPALAKKNLQSALISLSDDARKQLDALMYSSLRERANSLKIQMQ 178 Query: 184 TQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKH 243 QE A+ Q+D RI ++ ALQ ANQ + + ++ +I+ D LF+LG L +MI+H Sbjct: 179 AQENSARAQRDYRISVLKNALQLANQMNIQQTKLNPASGEISDDMLFMLGVPILNTMIEH 238 Query: 244 EATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAV 303 E PL F+ +Y+ ++ I K+ + ++ + + + + K+A+ L+L++ Sbjct: 239 EKNLPLKFNASYFDMQEMFDSINGFKLTEDNLSIFN---ATNISVDKVGQKRALILVLSL 295 Query: 304 LLGGMVGAGIVLGRNALRNYN 324 LLG ++ G +L RNALR+ N Sbjct: 296 LLGVILSCGYILLRNALRSAN 316 >UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=174 Tax=Enterobacteriaceae RepID=WZZE_ECO57 Length = 348 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 84/338 (24%), Positives = 153/338 (45%), Gaps = 42/338 (12%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNA 76 ++D+ L LW GK+ II + +A+ Y A+++W+STAI +P V + GY + Sbjct: 16 ELDIRGLFRTLWAGKLWIIGMGLAFALIALAYTFFARQEWSSTAITDRPTVNMLGGYYSQ 75 Query: 77 ------MNVIYGQAA---PKVSD-------------------------LQETLIGRFSSA 102 ++V A+ P V D ++ ++G + Sbjct: 76 QQFLRNLDVRSNMASADQPSVMDEAYKEFVMQLASWDTRREFWLQTDYYKQRMVGNSKAD 135 Query: 103 FSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 + L E ++N + P + + +V + +TA A L QY+ + Sbjct: 136 AALLDEMINN------IQFIPGDFTRAVNDSVKLIAETAPDANNLLRQYVAFASQRAASH 189 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 L +LK A ++ ++ QE VA+ D R+ I++AL+ A Q +++ E Sbjct: 190 LNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALKIAEQHNISRSATDVPAE 249 Query: 223 DITQDTLFLLGSEALESMIKH-EATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYV 281 ++ +FLLG L++ +++ +A P F +Y Q R L + D YRY+ Sbjct: 250 ELPDSEMFLLGRPMLQARLENLQAVGP-AFDLDYDQNRAMLNTLNVGPTLDPRFQTYRYL 308 Query: 282 MKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 P P++RDSP++A +I+ ++GG++GAG+ L R Sbjct: 309 RTPEEPVKRDSPRRAFLMIMWGIVGGLIGAGVALTRRC 346 >UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Providencia RepID=D1P4F6_9ENTR Length = 375 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 98/347 (28%), Positives = 167/347 (48%), Gaps = 39/347 (11%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP------DVGQ 69 ++IDL+ L+ L++ K III +V AL+IG + +KWTS AII QP ++ + Sbjct: 27 DEIDLMALVAVLFKNKYLIIIFTVVITALSIGVVKTLPQKWTSEAIIIQPTSEETKEISE 86 Query: 70 IAGYNNAMNV--------IYG----QAAPKVSDLQETLIGR---FSSAFSALAETLDNQE 114 A +A++ IY Q KV+ QE + + S + L + D QE Sbjct: 87 FAARLSALDFNIDLGSARIYNEFITQYRSKVN--QEDYVRSTEYYQSLLAKLGDKNDVQE 144 Query: 115 EREKLT--IEPSVK---------NQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQEL 163 E+ + I S+K + + +S+ TA AQ L YI+ +V + Sbjct: 145 EQRLVNRIISDSIKLKYNAKEKDSDDSDIILSFTAPTAIEAQDLLNGYIRYTASQVRKRF 204 Query: 164 EKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGED 223 + ++ + I+ ++L+ Q D++I +++ A+ A A +T+P I + Sbjct: 205 KTEIDNAISRQLIYSVEALKNDTAKIQIAYDVKIERLKRAITIAKAAGITRP-IARDAVA 263 Query: 224 ITQDTLF--LLGSEALESMIKHE-ATRPL-VFSPNYYQTRQNLLDIESLKVDDLDIHAYR 279 I D + LGSEALE + E R L + S ++ ++ ++ L +LD R Sbjct: 264 INDDPDYPIALGSEALEEKLAIELKNRDLALISEKLQNSKMHIDNLNGLTTKELDFQPVR 323 Query: 280 YVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 +++ P LPI +DSPK A+ + L +LG ++ VLGR+ RNYN + Sbjct: 324 FILTPDLPIAKDSPKSALIVALGAILGLILSCAFVLGRDLYRNYNGQ 370 >UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0GV84_VIBMI Length = 379 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 104/357 (29%), Positives = 166/357 (46%), Gaps = 64/357 (17%) Query: 18 IDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAM 77 IDL +L LW+GK TII S+ + AI Y A+E W+S A +TQP + IAGY + Sbjct: 25 IDLRELFSALWKGKWTIITSMFIFTFAAITYSLTAQEWWSSKATVTQPLLQDIAGYQKVV 84 Query: 78 --------------NVIYGQAAPKVSDLQETLIGRF----------------SSAFSALA 107 +I +A + D E + RF ++ F AL Sbjct: 85 QRSQPLFDLHQQDGTIIVSEALDSLID-PEVIFKRFLQEFNANGTKRRFMQTNATFLALK 143 Query: 108 ETLDNQEEREKL------TIE-----PSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVD 156 + L NQ+ E L E P K ++ T+S+ + + L+QY+Q V+ Sbjct: 144 KELLNQDNPESLQDFYEQWFERIKGVPVGKKEENIFTLSFQSVDKDSSLTLLSQYVQFVN 203 Query: 157 DKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQY----ANQAQV 212 +NQ+L DL + + ++ QE ++Q LR++ E QY A A + Sbjct: 204 QTINQQLNNDLFNTLVAKYGEIEQ----QENYLRQQAQLRLQVELERTQYALAIAEAAAI 259 Query: 213 TKPQIQQTGEDITQDTLFL-LGSEALESMIKHEATRPL----VFSPNY--YQTRQNLLDI 265 T+P +Q GE Q+ + +GS AL++ K +A + + VF P Q++ + D+ Sbjct: 260 TQP-LQNLGE---QEIFAINIGSRALKA--KVDALKSIKNLSVFDPQLAILQSKLSQFDL 313 Query: 266 ESLKVD-DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 L D I+ + Y+ +P + +D+PK+A+ +L L GGM+G IVLGR R Sbjct: 314 NELSTDIKWSINGFYYLDQPEQALTQDNPKRALITVLGFLFGGMIGVVIVLGRFIFR 370 >UniRef50_P26266 Ferric enterobactin transport protein fepE n=158 Tax=cellular organisms RepID=FEPE_ECOLI Length = 377 Score = 104 bits (260), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 97/347 (27%), Positives = 169/347 (48%), Gaps = 52/347 (14%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYL--AVAKEKWTSTAIITQP--------- 65 +IDL++L+ LWR K T++ +V+ A A A G L + +KWTS A++T P Sbjct: 26 EIDLLNLISVLWRAKKTVM-AVVFAFACA-GLLISFILPQKWTSAAVVTPPEPVQWQELE 83 Query: 66 ---------DVGQIAGYNNAMNVI------------YGQAAPKVSD-LQETLIGRFS--S 101 D+ A N+ Y +++P V D L+E I Sbjct: 84 KSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDLHR 143 Query: 102 AFSALAETL----DNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDD 157 A AL+E + DN +++ EPS+ T+S+ T+E AQ L+ YI + Sbjct: 144 AIVALSEKMKAVDDNASKKKD---EPSLYTS---WTLSFTAPTSEEAQTVLSGYIDYIST 197 Query: 158 KVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI 217 V +E +++++ + + + ++ L + + Q D I+++ +L AN A + KP + Sbjct: 198 LVVKESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKP-V 256 Query: 218 QQTGEDITQDTLFL--LGSEALESMIKHEATRPLVFSPN-YYQTRQNLLD-IESLKVDDL 273 G+ + D F LG++ +E ++ E V N + RQ L++ + V+D+ Sbjct: 257 YSNGQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDV 316 Query: 274 DIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 + ++Y + P LP+++D P KAI +IL+ L+GGMV G VL R A+ Sbjct: 317 NFTPFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAM 363 >UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropneumoniae RepID=B0BR52_ACTPJ Length = 370 Score = 103 bits (257), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 96/360 (26%), Positives = 165/360 (45%), Gaps = 58/360 (16%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 N E+IDLI+L+ LW+ K+ I I + ALA Y AKEKWTS + P V I+ Sbjct: 9 NQTNEEIDLIELVRVLWKKKLLIAIVTCIFTALAAVYAFTAKEKWTSQTEVIAPRVTDIS 68 Query: 72 GY---NNAMNVIYGQAAPKVSDLQETLIGRFSS---------AFSALAETLDNQEEREK- 118 Y N+I G + K ++++ L FS AF +T E E Sbjct: 69 EYLSLRKEYNLIIG-SEFKENEIRNELSELFSRYVLSYDEAIAFFKTTDTYKKLAETENE 127 Query: 119 ---------------LTIEPSVKN--QQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ 161 I+P K L ++ TA AQ L +I + D + Sbjct: 128 VGLQRAVAEFTTESLKVIKPDAKKDPNALGSKIAISFDTALSAQTTLNDFICHISD-TSF 186 Query: 162 ELEKDLKDNIALGRKNLQDSLRTQEVVAQE---QKDLRIRQIQEALQYANQA-------- 210 K+ + I ++++ +EV+ Q+ Q+ ++I+ ++ AL A +A Sbjct: 187 NFSKN--EFIYWIKESISSLNYEKEVIEQDQSIQRKVQIQNLETALDMAKKAGIKEYSSA 244 Query: 211 ----------QVTKPQIQQTGEDITQDT-LFLLGSEALESMIKHEATRPLVFSPNYYQTR 259 V+ +I + + T LF+LG + L++ + T+ +V+SP YYQ + Sbjct: 245 LSSNSSVANLAVSDTKIPLSDSKLADGTYLFMLGEKNLQAQLDIAKTKEIVYSPRYYQIQ 304 Query: 260 QNLLDIESL--KVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGR 317 + LL + +L KV+ + ++ Y+ P LPI+RD PK+ I L++ ++GG++ + V+G+ Sbjct: 305 EQLLKLNTLLPKVEKVTGQSFSYISSPELPIKRDWPKRFILLLIGAVIGGVLSSLWVIGK 364 >UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q4F4_PROST Length = 372 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 87/346 (25%), Positives = 165/346 (47%), Gaps = 41/346 (11%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 ++IDL+ L L R K+ II+ +V ++I + +KW+STA++ P +I N Sbjct: 27 DEIDLMALFAVLLRNKLLIIVITVVITLISIFVVFQLPQKWSSTAVVIPPSSEEIKDINT 86 Query: 76 ------------------AMNVIYGQAAPKVSDLQETLIGRFSSAFSALAE---TLDNQE 114 N Q KV+ QE + R ++ F L+E + D + Sbjct: 87 LSAQLSVLDVKIDLSAQQIFNAFIDQYRSKVN--QEAYV-RSTNYFKKLSEQVNSTDKEN 143 Query: 115 EREKL--TI---------EPSVKNQQLP-LTVSYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 E+++L TI + KN + +++V T AQ L+ Y++ KV ++ Sbjct: 144 EQQRLVNTIISNNIGLKDQSKEKNSTSSDIILTFVAPTPSEAQDLLSGYVRYTATKVREQ 203 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 +KD+++ IA ++ + + + + D+++ +++ A+ A A V KP + + Sbjct: 204 FKKDIQNAIAQQLVYANETFKQEVTKIRSEYDVKVERLKRAIDIAKAAGVRKPIVSDSAI 263 Query: 223 DITQDTLF--LLGSEALESMIKHEA-TRPLVFSPNYYQTRQNLL-DIESLKVDDLDIHAY 278 I+ D + LG+EALE + E R + Q RQ+ + ++ L +D LD Sbjct: 264 -ISDDPDYPIALGTEALEKKLAIELQNRDIALLNEDLQIRQHYIKNLSELDIDTLDFIPA 322 Query: 279 RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 ++++ P LP ++DSPK + ++L+ +LG ++ VL R R+Y+ Sbjct: 323 KFMLAPDLPTQKDSPKSVLIIMLSAILGFILSCAYVLSRELYRDYH 368 >UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7N8_TOLAT Length = 372 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 87/353 (24%), Positives = 164/353 (46%), Gaps = 50/353 (14%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIG-YLAVAKEKWTSTAIITQPDVGQIA 71 D ++IDL++L LW+ K I + V A L G Y A+E WTS A+ P + +I Sbjct: 21 QDNDEIDLVELFRTLWKQKAKIAL-VTAATTLVAGIYAFTAEEVWTSKAVFDAPKLEEIG 79 Query: 72 GYNN---------------AMNVIYGQAAPKVS----------DLQETLIGRFSSAFSAL 106 Y A+ +I Q +V DL+ + S + L Sbjct: 80 SYYEFTQQLRRTLQKPTIGAITLIPDQITKEVFTEFQKQTNSIDLRREFWSQ-SDYYHNL 138 Query: 107 AETLDNQEEREK---------LTIEPSVKNQQLPL-TVSYVGQTAEGAQMKLAQYIQQVD 156 + +++++EK +T+ P + Q++ +VS A A+ L QY+ +++ Sbjct: 139 VINIKSEKDKEKKLDDLIEKNITVVP-IDEQKVKFPSVSLSVNDATTAKELLIQYVDKLN 197 Query: 157 DKV----NQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQV 212 KV + EL+ LK+ +A L++ + E A+ ++ I I++A A +A + Sbjct: 198 AKVWKSKSTELKTILKEEVA----ELENEKKLLEFRAETDRNNSIDIIRKAKSVAEKANI 253 Query: 213 TK---PQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLK 269 + +Q ++D LF LG++AL++ I + +P+ YY+ + L +++ L Sbjct: 254 KELNLSAMQGNANVSSRDMLFFLGTKALDAQIDNLVNKPVTMPVRYYEVERMLTELKKLP 313 Query: 270 VDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 +DI +YRY+ P P+ RD PK+ + ++++ L G ++ +L + N Sbjct: 314 EFKVDIKSYRYLQAPSEPLTRDGPKRTLIIVVSFLFGMILSCIAILIKKVFLN 366 >UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 Tax=Enterobacteriaceae RepID=Q3YTC2_SHISS Length = 346 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 88/326 (26%), Positives = 147/326 (45%), Gaps = 33/326 (10%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 ++IDL +LL LW+ K I+ ++ LA Y AKE+WT+ I P + ++ Y Sbjct: 6 DEIDLFELLGTLWKKKWVILCVTLLTTGLAAVYAFTAKEQWTAKTYIQAPRIAELGSYLK 65 Query: 76 AMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQ-----------EEREKLTIEPS 124 + Y + + D G FS +AE+ D + +E L+ E Sbjct: 66 -FHQAYARILNQPLDTNALANGLFSDLI-LIAESPDTKVKFLESTEYYKKETNNLSTEQD 123 Query: 125 VK-------NQQLPLT-------VSY--VGQTAEGAQ--MKLAQ-YIQQVDDKVNQELEK 165 K N+ L +T SY + +A+ AQ KL Q Y++ V+++ Sbjct: 124 KKIWLAEQANKGLVITPPKEKGNTSYYIIQASADSAQEAYKLLQGYLKNVNNQAVTLSLD 183 Query: 166 DLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDIT 225 + N+ NL + + + +K +I IQ L A QA + + + G D Sbjct: 184 EFGQNVNTLLVNLNKEIIDIDFQRKSEKLDQIAHIQRDLTTAEQAGIIDYRSSKGGFDNA 243 Query: 226 QDTL-FLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKP 284 Q + FLLG + L + +K P+++ YY+ ++ + ++E + D++ AYRY MKP Sbjct: 244 QSSYKFLLGEKLLSAELKATKDAPIIYPFRYYEVKRQIDELEGMLRDNIQAQAYRYQMKP 303 Query: 285 MLPIRRDSPKKAITLILAVLLGGMVG 310 P+ +D P KA+ LIL L G M Sbjct: 304 SEPVIKDKPNKALILILGALPGAMFA 329 >UniRef50_UPI0001C34705 lipopolysaccharide biosynthesis protein n=3 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C34705 Length = 318 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 78/301 (25%), Positives = 143/301 (47%), Gaps = 20/301 (6%) Query: 27 LWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNV-IYGQAA 85 LW K TI I ++ + YLA+AK +WTS I+ P++GQ++ Y A+++ + Q Sbjct: 19 LWVHKNTIFIITAFSMMIGCFYLALAKPQWTSVVFISSPELGQLSNYPEAVDLSLREQTW 78 Query: 86 PKVSDLQETLIGRFSSAFSALAETLDNQEEREK-----LTIEPSVKNQQLPLTVSYVGQT 140 +DL + F+ +D EREK +P V N ++ +++ Sbjct: 79 ADKADLS-------TKVFNLFLANIDAYIEREKPNSPVAIFKPEVGNYRV---LTFSSTN 128 Query: 141 AEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQI 200 A+ AQ +L + + ++ + Q L + + ++ L + +LQ L E +EQ+ L I Sbjct: 129 AKLAQSELTELVAFLNQQTQQNLYQSIHQSLELRKHSLQRRLNALEASTKEQEQLHIALW 188 Query: 201 QEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQ 260 + A NQ ++ +I+Q E+I+ + L ++ ++ + L F +Y++T+ Sbjct: 189 ERA---KNQ-RLKGGEIKQLPENISDEPLLMMEVAVFTALFELLQDTRLPFDADYFETKT 244 Query: 261 NLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 L + S K+ + A + P L RDSP+ L L++L G +VG V R + Sbjct: 245 ALSLLSSFKLSESRFQAVNIISPPSLAKHRDSPRVPFVLGLSLLFGIVVGVTYVFIRQSW 304 Query: 321 R 321 R Sbjct: 305 R 305 >UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C7A7_9GAMM Length = 351 Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 96/349 (27%), Positives = 161/349 (46%), Gaps = 40/349 (11%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 N ++IDL +L+ LW+GK+TI + IV AI Y A++ WTS A +T+ A Sbjct: 9 NSSNDEIDLAELVKTLWQGKVTIALCSIVFTVCAIVYALTAQQWWTSDATVTRGQYKDTA 68 Query: 72 GYNNAMNVIYGQA-APKVSDLQET--LIGRFSSAFSAL-----------------AETLD 111 + + +Y KV+++ E+ L+ F + F+A + Sbjct: 69 NIRSQVTNLYSVIDVSKVNNIFESGRLLNEFITEFNAFDNKKAFLEQNSIIEQYAKDDGV 128 Query: 112 NQEEREKL------TIEPSVKNQQLPLTV---SYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 N+E++ K I+ S+ +++ V S+ +++E A L Y + D+V E Sbjct: 129 NKEDKGKFIAFWAKKIDASLNDEKKRPNVYKLSFEARSSEAAHDLLKAYSSFITDQVRDE 188 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKP--QIQQT 220 + IA ++ L S + E+ A+E++ + + AL A A+V KP + T Sbjct: 189 AFSVIASKIAHNKQILLASKESLELKAKEKQKALLLKTNYALDIARSAKVNKPLADVNLT 248 Query: 221 GEDITQDTLFLLGSEAL--ESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVD-DLDIHA 277 G Q LG+E L +S I F P+ Q + L + + +D D + + Sbjct: 249 GVFPIQ-----LGTEGLKEQSNILKSMKDLSFFEPSLTQIKIKLGLLSKIYLDKDTAMKS 303 Query: 278 YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 RY+ PI RD PK+++ +L LLG M+G IVL ++A N NAK Sbjct: 304 VRYLKDIDYPISRDKPKRSLIAVLGFLLGMMLGVAIVLLKSAF-NKNAK 351 >UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 Tax=Cronobacter RepID=C9XZM2_CROTZ Length = 377 Score = 90.1 bits (222), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 84/347 (24%), Positives = 160/347 (46%), Gaps = 43/347 (12%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTI--IISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQ 69 +H ++DL L+ L++ + I I ++ + + LA+ +L +KWTS A+++ P+ Q Sbjct: 21 DHPRAELDLFALVAVLFKARKMILSITALFIVMGLALAFLL--PQKWTSEAVVSIPETRQ 78 Query: 70 IAGYNNAM---NVIYGQAAPKVSDLQETLIGRFSSAFSALAETL------------DNQE 114 + + V+ AA + L+ + +F S AL E + Q Sbjct: 79 LIELQRVLVDLQVLDVDAAIDAASLENMFLKKFDS--RALQEKFLRTSPWVQAQVKEAQS 136 Query: 115 EREKLTIEPSVKNQQLPLT-----------------VSYVGQTAEGAQMKLAQYIQQVDD 157 + E L ++ Q++ +T +S+ A+ AQ L +YI Sbjct: 137 DTESLERAVTLVAQRIKMTSNDNPKAPTASPYSSWTLSFTAPKAQDAQRVLKEYINYAAL 196 Query: 158 KVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI 217 V +++ ++L+ I L K+ + L + + I+++ +LQ AN A + KP + Sbjct: 197 AVQRQVLENLRTTIELKVKSEESRLMIDRNTLANEHKIAIQRLNYSLQVANAAGIKKP-V 255 Query: 218 QQTGEDITQDTLF--LLGSEALESMIKHEATRPLVFSPNY-YQTRQ-NLLDIESLKVDDL 273 G+ + D + LG++ L + E + V + N Q R+ L +++ L + D+ Sbjct: 256 YSNGQAVKDDPDYSIALGADGLAQKLAIERSITDVTALNAAIQNREYRLAELKKLNLADV 315 Query: 274 DIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 D + Y M P LP++ D P KA+ LILA L+G ++ +VL R+ + Sbjct: 316 DFQPFHYQMAPSLPVKSDGPGKALVLILATLMGFIIACALVLVRDVI 362 >UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C5S1B1_9PAST Length = 378 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 93/369 (25%), Positives = 157/369 (42%), Gaps = 61/369 (16%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 S N ++IDLI+L+ LW K+ IIIS ++ A+A Y AKE+WTS A + P V Sbjct: 5 SKMNSANDEIDLIELVKTLWDKKIWIIISTVICTAIAGIYAFTAKEQWTSKAEVIAPKVT 64 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEE------------- 115 + Y N Y + + D G F+ F+ L+E+LD + E Sbjct: 65 DLGSYFNVRKE-YARILGQEFDAGALANGLFAK-FNLLSESLDERNEFFVQSDVYKKLIE 122 Query: 116 ---------------REKLTI---EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDD 157 RE + I +P + + +S++ +T E AQ+ L ++I Sbjct: 123 GKDEKSQRSILSNLTRENIAITKPDPKKEPDLIGRRISFLAETPEDAQLTLEKFIAFTSQ 182 Query: 158 KVNQ-ELEKDLKD------NIALGRKNLQDSLRTQEVVAQEQ--------KDLRIRQIQE 202 Q ELE L + ++ + + L Q V E K+ I+ + Sbjct: 183 SAYQLELENFLINLNEVLSDLTYEKTKFERDLSIQRSVQLENLHNALNIAKEAGIKDYAK 242 Query: 203 ALQYANQAQV-----TKPQIQQTGEDITQDT-LFLLGSEALESMIKHEATRPLVFSPNYY 256 A N + ++ +I + ++ T LF+LG + L++ I + +++ P YY Sbjct: 243 AFGATNDTALQAIAMSETKIPLSDSKLSDGTYLFMLGEKYLQAQIDVLTQKGVIYPPRYY 302 Query: 257 QTR--QNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIV 314 Q L+ +KV + +A+ Y P P+ +D PK+ L +LLGG V G++ Sbjct: 303 QVSELLKELEPLLVKVKEAKANAFSYQASPDYPVVKDKPKR-----LFILLGGAVAGGLL 357 Query: 315 LGRNALRNY 323 + NY Sbjct: 358 SALVLIMNY 366 >UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enterobacteriaceae RepID=B4F1Q0_PROMH Length = 372 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 84/346 (24%), Positives = 162/346 (46%), Gaps = 44/346 (12%) Query: 16 EQIDLIDLLVQLWRGKMTII-ISVIVAIALAIGYLAVA--KEKWTSTAIITQP---DVGQ 69 ++IDL +L L++ K II I+++ AI +G+ + +KWTS A IT+P ++ Q Sbjct: 27 DEIDLFELFSVLYKSKFVIIGITLLFAI---VGFTVASFLPQKWTSQAAITKPMLDEMKQ 83 Query: 70 IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSS------------AFSALAETLDNQEERE 117 + N ++++ S + + I ++S + L +D+ + Sbjct: 84 LRATLNDLSLVDVDTGVNASSVYQKFINNYNSRVLREEYLVNTDYYKNLLAKMDDPTPLD 143 Query: 118 KLTIEPSVKNQQLPL----------------TVSYVGQTAEGAQMKLAQYIQQVDDKVNQ 161 K + ++ + + L +S+ T+E A L+ YI+ + KV Sbjct: 144 KRKLIETIVTKDINLKASDSKNSDEEFSGEINLSFTAPTSEEAYDLLSGYIRFISTKVRV 203 Query: 162 ELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTG 221 E++ ++ D I + Q + + +++ +++++ AL+ AN A V KP I G Sbjct: 204 EVKDEIDDQIERKLNHAQKAYQMDLERIANARNVNVQRLKYALEIANAAGVKKP-ISSEG 262 Query: 222 EDITQDTLF--LLGSEALES--MIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHA 277 I D + +G++AL S I T P S N+ +E +K+ DL Sbjct: 263 AQIKDDPDYSIAMGADALSSKLAITEAITDPTTVSSELKNRLYNIQQLEQIKLGDLQFVP 322 Query: 278 YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGA-GIVLGRNALRN 322 ++Y++KP P ++D+PK+A+ L+ A +G ++ G++LG A RN Sbjct: 323 FKYMLKPYEPTKKDAPKRALILVGAAFVGFILSVMGVLLGYMA-RN 367 >UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65UU8_MANSM Length = 396 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 94/368 (25%), Positives = 165/368 (44%), Gaps = 62/368 (16%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD 66 ++S QN++ E IDLIDL+ LW+ K+ +I++ +A Y AKE+WTS A P Sbjct: 28 SMSPQNNNDE-IDLIDLIKVLWQKKLVVILTSFFFALIAAIYAFTAKEQWTSKATTIAPK 86 Query: 67 VGQI-------AGYNNAMNVIYGQAAPKVSDLQETL-IGRFSS----AFSALAETLDN-- 112 V + + Y N +N+ + V +L + FS+ F A ++ N Sbjct: 87 VADMGYYLSLRSEYANILNIKEFTSKDVVDNLFNNFRVALFSNNMKREFFAQSKWFQNYA 146 Query: 113 ------QEEREKLTIE----------PSVKN--QQLPLTVSYVGQTAEGAQMKLAQYIQQ 154 ++ ++KL + P +K L + +S+ +T + AQ L +YI Sbjct: 147 NENAKDEDAKQKLLSDILDKSLIVTIPDIKKNPNALGINISFAAETPKEAQEVLTEYINF 206 Query: 155 VDDKVNQELEKDLKDNIALGRKNLQ---DSL-RTQEVVAQEQKDLRIRQIQEALQYANQA 210 ++ V E + D +I + NL+ D + R E V Q Q + + AL A A Sbjct: 207 INATVLTEDKIDFLADIKIAIDNLELQKDKIQRDTESVRQVQ----LENLTTALDIAKSA 262 Query: 211 ----------QVTKP-------QIQQTGEDITQDT-LFLLGSEALESMIKHEATRPLVFS 252 V+ P QI T ++ + LF+LG + L++ + +V+ Sbjct: 263 GIKEYSKTSGNVSIPQFALGDAQIPFTDSKLSDGSYLFMLGEKYLQAQVDTLTNNKVVYP 322 Query: 253 PNYYQTRQNLLDIESLKVD---DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMV 309 ++Y + + + SL+ D + +Y Y+ P P RD PK+ + L++ +LGG++ Sbjct: 323 VSFYTIEKQVSLLNSLEQKANTDSKVTSYYYLTSPDYPTTRDWPKRVLLLLIGAVLGGVL 382 Query: 310 GAGIVLGR 317 G VLG+ Sbjct: 383 GCLWVLGK 390 >UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycetemcomitans RepID=Q9JRS3_AGGAC Length = 369 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 91/364 (25%), Positives = 157/364 (43%), Gaps = 61/364 (16%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 ++IDL++L+ LW ++ II+ + +A Y+ AKE+WTS A I P + ++ Y Sbjct: 9 DEIDLVELIKVLWNKRLWIILFSLFFTTIAGIYVFTAKEQWTSKAEIIAPRITELGDY-F 67 Query: 76 AMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQE-----------------EREK 118 + Y + D T F F+ L+E+LD ++ EREK Sbjct: 68 LVKKEYARILGSEFDASMTANNLFGQ-FNLLSESLDERKKFFEKSDFYKKESEGKSEREK 126 Query: 119 LTIEPSVKNQQLPLT--------------VSYVGQTAEGAQMKLAQYIQQVD-------- 156 L I + + + + +S+ +T AQ L+++I V+ Sbjct: 127 LQILFDLMTKNIAIKKPDTKKYPDLIGNQISFYAETPIEAQNVLSKFISTVNISAYQIEL 186 Query: 157 DK-----------VNQE---LEKDLKDNIALGRKNLQDSLRT--QEVVAQEQKDLRIRQI 200 DK +N E E+DL+ + ++ KNL+ +L + + + K I Sbjct: 187 DKFLTDFNEIIADLNYEKIKFERDLRIHKSVQLKNLESALNIAKEAGIKEYSKSFSIADP 246 Query: 201 QEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQ 260 Q LQ ++ P D T LF+LG L++ I +++ P YYQ Sbjct: 247 QLVLQAIAVSEAKVPLSDSKLSDSTY--LFMLGETYLKAQIDVLKNNNIIYPPRYYQVSS 304 Query: 261 NLLDIESL--KVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 L ++E L K + +A+ Y P P+ RD PKK + L + +LG ++G+ +L R Sbjct: 305 QLSELEPLLIKAKQVKANAFSYQASPDYPVVRDKPKKLLILSIGFILGLILGSIYILFRK 364 Query: 319 ALRN 322 + N Sbjct: 365 LVSN 368 >UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VMI6_ACTSZ Length = 346 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 92/354 (25%), Positives = 152/354 (42%), Gaps = 70/354 (19%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNA 76 +IDLIDL+ LW+ K+T+I+S + +A Y A EKWTSTA + P + Y NA Sbjct: 15 EIDLIDLIKVLWKKKLTVILSAFLFAIIAAIYAFTATEKWTSTAEVIAPTGVDMGAYGNA 74 Query: 77 MNVIYGQAAP----KVSDLQETLIGRF----------------SSAFSALAETLDNQEER 116 + + Q A V + ++L +F S + L + D + +R Sbjct: 75 -KLRFAQIAKLPDITVDTVSKSLYAKFDRLAFSQNERRNFFSQSDEYKGLIQDQDEKAQR 133 Query: 117 EKLTI-----------EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEK 165 + L+ +P +S+ QT E AQ LAQ++ +++K EL+K Sbjct: 134 KILSALTTEYTAVVRPDPKKNADMFGNKISFSAQTPENAQKTLAQFVDFINEKAF-ELDK 192 Query: 166 D---LK-----DNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI 217 + +K DN+ +K +++SL VV +EQ + + Q + PQ Sbjct: 193 NEFQMKIAQQIDNLTNEKKEIEESL----VVQKEQNTENAKPLNAIPQ-------SLPQT 241 Query: 218 QQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLL--DIESLK-----V 270 + L + AL LV+ +Y + + ++ I LK V Sbjct: 242 NLNSASQSSQDSALDPAMAL-----------LVYGDDYSRMQLRIITGQINQLKALQNAV 290 Query: 271 DDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 L Y Y P P++RD PK+ I L++ +LGG++G V+G+ L N Sbjct: 291 KGLTAQTYTYQASPSYPVQRDWPKRVILLLVGAVLGGILGCVWVIGKQILGGNN 344 >UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4SZ47_YERIN Length = 372 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 86/348 (24%), Positives = 167/348 (47%), Gaps = 48/348 (13%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVA--IALAIGYLAVAKEKWTSTAIITQPDVGQ- 69 HD +IDLI++ L+R K II+ V+V I L +G+ +KWTS+++I P + Sbjct: 24 HD--EIDLIEIFSMLFRAKKIIILIVVVFALIGLIVGFFL--PQKWTSSSVIIAPTYSES 79 Query: 70 -----------IAGYNNAMNVIYGQAA-PKVSD---LQETLIGRFSSAFSALAETLDNQE 114 +AG ++ ++ Y A + D L++ + + + L + N E Sbjct: 80 MLLDNLLGELKVAGVDSGIDENYLLATYMQFCDSRILRDAFLQQ-TDYLKMLMKKNPNDE 138 Query: 115 EREK----------LTIEPSVKNQQLP------LTVSYVGQTAEGAQMKLAQYIQQVDDK 158 +++ +T E + ++ + + QT + A+ L Y+ V + Sbjct: 139 FKKQSLLDVISTNNITTESNANDKSASTKDNNYFRLKFSAQTPDSAKDLLQGYMNYVKES 198 Query: 159 VNQELEKDLKDNIALGRKNLQD--SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQ 216 N + L+ ++AL + Q SL +Q V Q ++D+RI++++ AL A A + KP Sbjct: 199 ANAYILFKLQRSLALKLEAEQRLFSLESQRV--QSRRDVRIKRLEYALSIAEAAGLKKP- 255 Query: 217 IQQTGEDITQDTLF--LLGSEALESMIKHEA--TRPLVFSPNYYQTRQNLLDIESLKVDD 272 + +G I D + LG +AL+ ++ E T PL S + N+ + ++K+D+ Sbjct: 256 VYSSGAAILDDPDYSITLGGDALKQKLRVEKSITDPLTTSADLRNRAINIDLLRNIKIDN 315 Query: 273 LDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 ++ ++Y+ KP +P ++D PK+ + L++ +G +V L R+ L Sbjct: 316 IEFTPFKYLQKPEVPTKKDGPKRLLILVIFTFIGLIVAIATALLRDGL 363 >UniRef50_A7JUL8 O-antigen chain length determining protein n=2 Tax=Pasteurellaceae RepID=A7JUL8_PASHA Length = 375 Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 90/363 (24%), Positives = 155/363 (42%), Gaps = 62/363 (17%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 ++V ++IDLI++ LW K I+I+ + LA Y AKE+WTS A + P Sbjct: 3 DSVKSHEQSSDEIDLIEIFRALWDKKWWIVITTFITTLLAGIYAFTAKEQWTSKATVIAP 62 Query: 66 DVGQIAGY-----------------NNAMNVIYGQAAPKVSDLQETLIGRF--SSAFSAL 106 + ++ Y NA++ +++ Q+T F S+ + L Sbjct: 63 KLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRLAQSQDTKNEFFITSNVYKTL 122 Query: 107 AETLDNQEEREKLT---------IEPSVKN--QQLPLTVSYVGQTAEGAQMKLAQYIQQV 155 AE D Q +R L+ I P K + T+S+ +T AQ L + +Q + Sbjct: 123 AEGKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGRTLSFSAETPMEAQDTLGKLVQFI 182 Query: 156 DDKVNQ-ELEKDLKDNIALGRKNLQDSLRTQEVVAQE----QKDLRIRQIQEALQYANQA 210 + K ELE L D +N+ +L+ ++ + QE K +++ + +A + A +A Sbjct: 183 NSKAFAVELEDFLVD-----FQNVLTALQYEKSLIQEDLSVNKSVQLENLNKAYETAQKA 237 Query: 211 ---QVTKPQIQQTGEDIT---QDT--------------LFLLGSEALESMIKHEATRPLV 250 + +K Q +I DT LF+LG + L++ I + +V Sbjct: 238 GIKEYSKAFNQSDASNIAAALSDTKISLSDSKLADSSYLFMLGEKYLKAQIDVANEKGVV 297 Query: 251 FSPNYYQTRQNLLDIESL--KVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGM 308 + P YYQ L +E L K + + Y P P+ +D PKK I L++ +G M Sbjct: 298 YPPRYYQIDYQLKQLEPLFEKTKTVKTQTFSYQASPDYPVIKDKPKKVIILLIGAFIGLM 357 Query: 309 VGA 311 + Sbjct: 358 ISC 360 >UniRef50_UPI000197BC0B ferric enterobactin transport protein FepE n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BC0B Length = 379 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 89/345 (25%), Positives = 161/345 (46%), Gaps = 41/345 (11%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN- 74 ++IDL+ L L + K I+I +V I +++G + + +KW+STAI+ P ++ N Sbjct: 34 DEIDLMALFSILLKHKFLILIFTVVCIVVSVGVVKLLPQKWSSTAIVIPPASEELKEVNA 93 Query: 75 -----------------NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEE-- 115 N Q KV+ QE+ I R + + LAE +D +++ Sbjct: 94 FKAQLDVLDIPIDLSAQRIFNSFVDQYRSKVN--QESYI-RSTDYYHNLAEKIDPKDDVI 150 Query: 116 -REKLT---IEPSVKNQQLP---------LTVSYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 +++L I +K Q L + +S+ AQ L YI+ KV Q+ Sbjct: 151 AQQRLVNSIISNDIKIQDLSKEKNSTSNDIVLSFTAPLPTEAQDLLEGYIRYSASKVRQQ 210 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 L+ ++ + I+ +SL+ + Q + D+++ +++ A+ A A + KP I Sbjct: 211 LKVEIDNMISEKLIYASESLKREVSKIQTEYDVKVERLKRAVDIAKAAGIEKP-IASDSV 269 Query: 223 DITQDTLF--LLGSEALESMIKHEA-TRPLVFSPNYYQTRQNLLD-IESLKVDDLDIHAY 278 I D + LG+EALE + E R L Q R+ LD ++ + +LD Sbjct: 270 AINDDPDYPIALGTEALEKKLLIETQNRDLALMSENLQNRKIYLDNLQEVTAKELDFTPV 329 Query: 279 RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 ++++ P LP+ +DSPK ++ + L+ +LG ++ VL R R+Y Sbjct: 330 KFILTPDLPLHKDSPKSSLIVALSAILGLILSCAFVLSRELYRDY 374 >UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aeromonas hydrophila RepID=Q8KNM2_AERHY Length = 362 Score = 82.8 bits (203), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 93/343 (27%), Positives = 161/343 (46%), Gaps = 49/343 (14%) Query: 17 QIDLIDLLVQLWRGKMTII-ISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 +IDL +L LWR K+ I+ I+V+ AIA IGY +A + W S + I P + ++ Sbjct: 26 EIDLYELFSVLWRQKIQILMITVVFAIA-GIGYALLAPQVWVSQSQIKPPSLQEVESLEL 84 Query: 76 AMN-VIYGQAAPKVSDL--QETLIGRFSSAFSAL-------------------AETLDNQ 113 +N +I Q + D + L G F S F++ A D++ Sbjct: 85 RVNQLINAQIPATIFDSFNKAALYGDFVSNFNSFNNKRQFLIEKGYLDMDAEAAGITDDK 144 Query: 114 EER---EKLTIEPSVKNQQLP---LTVSYVGQTAEGAQMKLAQYI-----QQVDDKVNQE 162 +R K+ S P +T+S+ TA AQ +L QYI Q++ K ++E Sbjct: 145 GKRALLRKMVNGISAVALDAPSDNITLSFGAATATEAQQRLEQYIAFIQQQEIVSK-SKE 203 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 LE ++ I + DS++ + + Q + D + + + +L+ + A + P E Sbjct: 204 LETIWQNRIKILLSQY-DSIKA-DTLTQLKDD--VSRTEYSLRISRAAGIETPV-----E 254 Query: 223 DITQDTLFLL--GSEALESMIK--HEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAY 278 ++ F + G++AL +K E + +P R L + ++K++ ++ Sbjct: 255 NLNVRDGFNIEWGAKALAEKLKVLKELKNLELLNPALSDLRLQLSSLRAIKLEQQSFQSF 314 Query: 279 RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 Y+ P P+ RD PK+ + ++LA LLGGM+G GIVL R+A R Sbjct: 315 SYLASPSEPLSRDKPKRPLVVVLATLLGGMLGIGIVLARHAFR 357 >UniRef50_A5KZS4 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZS4_9GAMM Length = 358 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 88/355 (24%), Positives = 151/355 (42%), Gaps = 54/355 (15%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 ++IDL +L LW GK+ II+ A +I + +A+E W+S+A IT+ +A Y Sbjct: 6 DEIDLRELFKALWDGKLIIILITAFFTASSIAFALLAQEWWSSSAKITKAQPQNLAAYQQ 65 Query: 76 -------AMNVIYGQAAPKVSDLQETLIG------RFSSAFSAL---AETLDNQEEREKL 119 N+ VS ++L+ RF +AF++ LDN E ++ Sbjct: 66 QVRQFQPVFNIYQEDGTVLVSKELDSLVDSKVLFQRFINAFNSTNNKRSFLDNSAEFQEF 125 Query: 120 TIEPSVKNQQL----------------------------PLTVSYVGQTAEGAQMKLAQY 151 +V + + P T+++ T E + LA Y Sbjct: 126 KSSMAVGSSDMSVDEARAFRAEWFNRISAFTADNKGPNSPYTINFQTMTKESSFELLAAY 185 Query: 152 IQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQ 211 I + V+++ +L+ + R L R E A Q + + + A Q A A Sbjct: 186 ILATELNVHEDAFNNLQAIVNGKRNELVQQKRILESQASNQLLVETARAKYAAQIAKSAG 245 Query: 212 VTKPQIQQTGEDITQDTLFL--LGSEALESMIKH-EATRPL-VFSPNYYQTRQNLLDIES 267 V +P QTG + LF LG++ L++ +K E+ + L V P + L + + Sbjct: 246 VDRPI--QTG---NEKELFSIDLGAKGLDAKVKALESVKNLSVIEPRLQEINAKLTMLNN 300 Query: 268 LKVD-DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 L +D ++ +R++ PI RD PK+ + ++ +G + GAG VL R A R Sbjct: 301 LDIDRTVEFQTFRFLENVEQPITRDKPKRVLIVLFGSFIGMLFGAGFVLIRFAFR 355 >UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae RepID=A6ADU0_VIBCH Length = 377 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 93/356 (26%), Positives = 158/356 (44%), Gaps = 56/356 (15%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 ++IDL +L + LW+GK II+ +V I Y +E W++ A ++QP + IA Y Sbjct: 24 DEIDLKELFLALWQGKWLIILCTLVFTVATITYALTVQEWWSAKAKVSQPQLQDIASYQQ 83 Query: 76 AM--------------NVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREK-LT 120 A+ +I + + D E + RF F+A L E L Sbjct: 84 AVKRYQPLFDVYQEDGTIIISETLDSLID-AEVIFKRFLQEFNANGTKLRFMETNTTFLE 142 Query: 121 IEPSVKNQQLP--LTVSY-----------VGQTAEGAQM-------------KLAQYIQQ 154 + + N+ P L Y +G+ +GA L +Y+Q Sbjct: 143 LRKDLLNKDDPQRLQAFYEQWFERIKGVSIGEKEDGAFTLSFQSVDKISSLALLREYVQF 202 Query: 155 VDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTK 214 V+ +NQ+L+ DL + L+ + Q + + + + Q AL A A + + Sbjct: 203 VNQIINQQLKDDLNSILVAKYGELRQQETNLQQQTQLRLQVELERTQYALNIAEAADIKQ 262 Query: 215 PQIQQTGEDITQDTLFL-LGSEALESMIKHEATRPL----VFSPNY--YQTRQNLLDIES 267 P +Q GE Q+ + +GS AL++ K +A + + VF P QT+ + +E+ Sbjct: 263 P-VQNLGE---QEIFAINIGSRALKA--KVDALKSIKDLSVFEPRLAILQTKLSQFGLET 316 Query: 268 LKV-DDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 L I+++ Y+ + P+ RD PK+A+ ++L LGGM+G IVL R A R+ Sbjct: 317 LSAGTKWSINSFYYLEQAKQPLSRDKPKRALIVVLGGFLGGMLGVAIVLVRFAFRS 372 >UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=Enterobacteriaceae RepID=Q7N0P7_PHOLL Length = 367 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 86/344 (25%), Positives = 162/344 (47%), Gaps = 43/344 (12%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVA--KEKWTSTAIITQPDVGQIAGY 73 ++IDL +L L++ K+ +II+V + A+ IG++A + +KW+S+A I +P + +I Sbjct: 25 DEIDLFELFSVLFQSKL-LIITVTILFAV-IGFVAASLMPQKWSSSASIVKPQLEEIQPL 82 Query: 74 NN---AMNVIYGQAAPKVSD-------------LQETLIGRFSSAFSALAETLDNQEERE 117 + + V+ Q + S L+E + + +AE+ D+ + Sbjct: 83 KDILTKLEVLNLQPSVTSSSLYNNFLNNFNSRVLREEYLVNTEYFKNLVAESGDHSPLVK 142 Query: 118 KLTIEPSV--------------KNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQEL 163 + IE V +N + LT S TAE A L YI V V++++ Sbjct: 143 RKLIEKIVNDNISSSSKAEKDDENGETKLTFS--AGTAEDAYNLLNGYIDYVSSVVHEQV 200 Query: 164 EKDLKDNIALGRKNLQDSLRTQEV-VAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 + +L D + + N + L + ++ ++ + +++ AL AN A + KP I G Sbjct: 201 KSELSDMVK-QKLNYSEGLYSVDLNRVNNIQEANVERLKHALSIANSAGIKKP-ISSEGA 258 Query: 223 DITQDTLF--LLGSEALES--MIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAY 278 I D + LG++AL+ I E P + + + ++++LKVD ++ + Sbjct: 259 MIKDDPDYSIALGADALQRKLQITEEIKDPTLIDADLRNRLFYIKELKALKVDKVNFQPF 318 Query: 279 RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 RY+ P P +DSPK+ + LI + LG ++ VL R+ +R+ Sbjct: 319 RYMQAPYEPTAKDSPKRLLILIGSAFLGLILAVVSVLIRHMVRS 362 >UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VHQ6_VIBSL Length = 374 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 94/357 (26%), Positives = 155/357 (43%), Gaps = 58/357 (16%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG------- 68 ++IDL + LW GK+ II+ + + AIG+ +A+E W+S A IT ++ Sbjct: 22 DEIDLREFFKALWDGKLIIILVTALFTSSAIGFALLAQEWWSSEAEITNNELQDRVMYEQ 81 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIG------RFSSAFSA-------LAETLDNQEE 115 Q+ + ++ + + S+ + L+ RF F++ L E+ + QE Sbjct: 82 QVKKFQPVFSIYQSDGSARSSEELDFLVDSQIIFQRFVDLFNSSNNKKAFLDESSEFQEI 141 Query: 116 RE---------------KLTIE---------PSVKNQQLPLTVSYVGQTAEGAQMKLAQY 151 ++ KL E K+ P +++ T E + L+ Y Sbjct: 142 KDDSFSSASEVTEDTTRKLYTEWFERISASLRDKKDTSSPYILTFQATTKESSFDLLSSY 201 Query: 152 IQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLR----IRQIQEALQYA 207 I + +V + L + + G +N L Q++V + + R I + Q AL+ A Sbjct: 202 ISFTELQVRNDAFDHL-EALVFGERN---ELFQQKMVLESKARNRLLVEIERAQSALKIA 257 Query: 208 NQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIK--HEATRPLVFSPNYYQTRQNLLDI 265 A V P + D LGS+AL+ IK V P Q L + Sbjct: 258 KAAGVETPLLSGNARDFYA---IELGSKALQEKIKILKSVKNLAVLEPRLQQITAQLDML 314 Query: 266 ESLKVD-DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 +S+K+D +D HA+RY+ P RD PK+A+ ++L LLGGM+G IVL R A R Sbjct: 315 DSIKIDRTVDFHAFRYLSDVEQPTTRDKPKRALIVVLGTLLGGMLGVAIVLIRFAFR 371 >UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZRK1_PHOAS Length = 347 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 79/342 (23%), Positives = 158/342 (46%), Gaps = 37/342 (10%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M++ NN ++ ++ ++ W+ K I+I+ ++ + Y A+ WTSTA Sbjct: 1 MKMSINNSMDESSQISGYTTLEWVLCFWQKKFLIVITTLIFAVAGVSYAYYAQSWWTSTA 60 Query: 61 IITQPDVGQIAGYNNAMNVIY-----GQAAPKVSDLQETLIGRFSSAFSALAETLD---- 111 +IT I ++ ++ +Y G + D ++ L+ F + F+A L+ Sbjct: 61 VITTNKARDIRIFSENIDNLYVNSGVGGLVSQALD-EKRLLRTFVNYFNAYNNKLEFLEG 119 Query: 112 ---------NQEER--------EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQ 154 N++E+ +++ E + Q+ ++SY ++ + L++YI Sbjct: 120 NKSIKSDFINEKEKHDFLQRFIKRINSEKVGNDSQVLYSLSYTATSSIKSHDLLSEYINF 179 Query: 155 VDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTK 214 +++KVN+E+ LK +I K L +S + ++ A+ ++ I + AL+ A A + K Sbjct: 180 INEKVNKEVVSSLKSDINNQMKRLTESTVSLKINAEVKQHAEILKTDYALKIAEAADLKK 239 Query: 215 PQIQQTGEDITQDTLFLLGSEAL--ESMIKHEATRPLVFSP--NYYQTRQNLL-DIESLK 269 P I + G +Q +G++ L +S+I H + +F P + Q + N L DI K Sbjct: 240 P-IAELGN--SQIFNIEIGTDGLKEKSLILHNSKDLALFEPQIDIAQAQINFLKDINLEK 296 Query: 270 VDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGA 311 + AYR+V P+ + P K I ++ +++ G VG Sbjct: 297 AKPFN--AYRFVKDVSYPMSQAYPSKLIIILFSIIFGFSVGC 336 >UniRef50_C9P0E2 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9P0E2_9VIBR Length = 383 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 96/359 (26%), Positives = 153/359 (42%), Gaps = 58/359 (16%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 ++IDL +LL LW GK+ III+ +V A+ + ++E W+S A +T+ IA Y Sbjct: 26 DEIDLRELLEALWNGKLIIIITTLVFAVGAVVFALNSQEWWSSKAKVTKAQPQDIAAYQQ 85 Query: 76 AM--------------NVIYGQAAPKVSDLQETLIGRFSSAFSAL---AETLDNQEE--- 115 + V+ + + D E L RF AF++ + LD+ E Sbjct: 86 QVKQFQPVFDIYQDDGTVLVSEELDNLVD-TEVLFKRFVDAFNSSNNKRDFLDSSSEFRA 144 Query: 116 -----------------------------REKLTIEPSVKNQQLPLTVSYVGQTAEGAQM 146 +K+T++ +Q P +S T E + Sbjct: 145 FKAKLETETETETETEAEAEVTRQLYAAWFQKITVKQDGIGKQSPYDISLQSTTKESSYS 204 Query: 147 KLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQY 206 L +YI + K +Q +L+ + R L R E A + + I + + A+ Sbjct: 205 LLNEYIGIIKRKAHQNALNNLQAVVDGKRNELIQQKRILESQAVNKLVVEIERAKFAMDI 264 Query: 207 ANQAQVTKP-QIQQTGEDITQDTLFLLGSEALESMIKH-EATRPL-VFSPNYYQTRQNLL 263 A A VT+P + + E D LG++ALE+ +K E + L V P Q L Sbjct: 265 AKAAGVTQPIRTNSSNEIFGID----LGTKALEAKVKALELVKNLSVVEPRLQQINAKLD 320 Query: 264 DIESLKVD-DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 +E LK+D + +R++ PI RD PK+ + +IL LLGG +G IVL R A R Sbjct: 321 MLEYLKIDRSIRFQTFRFLESVDKPISRDKPKRTLIVILGTLLGGTLGVAIVLIRFAFR 379 >UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10 Tax=Yersinia RepID=C4UHK4_YERRU Length = 384 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 78/356 (21%), Positives = 154/356 (43%), Gaps = 56/356 (15%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAI--ALAIGYLAVAKEKWTSTAII 62 N S + ++ID+ +L ++R K+ II+ ++ + L + Y + +KWTST+II Sbjct: 17 NYGFSDMSSSKDEIDIFELFTIIFRSKLKIILVTLIFLISGLVVSY--ILPQKWTSTSII 74 Query: 63 TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIE 122 Q+ ++ I A V D+ + + S + D+Q+ RE+ I Sbjct: 75 VPAGEEQL----QVLDKITINLA--VLDINLGITSNY--LLSTFKQNFDSQDLREQYLIN 126 Query: 123 PSVKNQQL--------------------------PLT-------------VSYVGQTAEG 143 Q + P+ +SY TA Sbjct: 127 TDYFKQMMKDSPEDAIERRAVIENIVNNSIGSINPIKDKSGNDNEYRYYKLSYSASTAVD 186 Query: 144 AQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEA 203 A+ L YI V+ VN ++ ++ + L + D + A+ +++I +++ A Sbjct: 187 ARDLLQGYINFVNSTVNADVNLKIQRAVDLAKGMATDKYSLDLLRAKNSHEVKIERLKYA 246 Query: 204 LQYANQAQVTKPQIQQTGEDITQDTLF--LLGSEALESMIKHEATRPLVFSPNY-YQTRQ 260 A+ A + KP + +G I+ D F +G++AL ++ E + + + N R+ Sbjct: 247 SSIADVAGIKKP-VYSSGSQISDDPDFPITMGADALNRKLEIEKSITDLTTVNADLLNRK 305 Query: 261 NLLD-IESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVL 315 LD + +L++ +D+ ++Y+ +P P +RD+PK+ + ++L L G + G VL Sbjct: 306 LYLDKLNALEIPKVDVVPFKYLQQPTEPTKRDAPKRGLIMVLFALAGLVGSVGFVL 361 >UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yersinia RepID=A4TP85_YERPP Length = 383 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 82/362 (22%), Positives = 159/362 (43%), Gaps = 56/362 (15%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAI--ALAIGYLAVAKEKWTSTAII 62 N + S + +IDL ++ +++ K II+ + + L + Y + +KWTSTAII Sbjct: 17 NYDFSNVSSSRNEIDLFEIFSVVFKSKFKIILITLFFLISGLVVSY--ILPQKWTSTAII 74 Query: 63 TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIE 122 P Q+ + + + V D++ + + S + D+Q+ RE+ + Sbjct: 75 ALPGDEQVQVLDELITNL------TVLDIKVDVSANY--LLSTFKQNFDSQDLREQYLVN 126 Query: 123 PS----------------------VKNQQL----PLT-------------VSYVGQTAEG 143 + + N+ + PL +SY T Sbjct: 127 TNYFKRLMKNNPEDGLDKRALIERIVNENISSVNPLKDKTEGENEYRYYKLSYSASTPTD 186 Query: 144 AQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEA 203 A+ L I V+ VN ++ + ++ + L + D + + A+ + ++I +++ A Sbjct: 187 ARDLLQGSINYVNTIVNADVFRKIQRAVDLAKGIGTDKYSMELLKARNNQKVKIERLRYA 246 Query: 204 LQYANQAQVTKPQIQQTGEDITQDTLF--LLGSEALESMIKHEATRPLVFSPNY-YQTRQ 260 A+ A V KP + G I+ D F +GS+AL ++ E + + S N R+ Sbjct: 247 SSIADAAGVKKP-VYSNGSAISDDPDFPITMGSDALNRKLEIEKSVIDLASINTELLNRK 305 Query: 261 NLLD-IESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 LD + L++ +++I ++Y+ +P P +RD PK+A+ +IL L+G M G VL + Sbjct: 306 LYLDKLNRLEIPNVNIVPFKYLQQPTEPTKRDVPKRALIVILFALVGLMGSVGFVLVEHF 365 Query: 320 LR 321 +R Sbjct: 366 VR 367 >UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 Tax=Edwardsiella RepID=C5BCN1_EDWI9 Length = 357 Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 83/342 (24%), Positives = 157/342 (45%), Gaps = 41/342 (11%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 ++IDL+ LL+ L++ K I+ +V+V + +KWTS A + ++A N+ Sbjct: 13 DEIDLLSLLLVLFKAKWVILGAVLVCALAGFAVKTLLPQKWTSYAELIPAQARELAAMNS 72 Query: 76 AMNVIYGQAAPKVSDLQETLIGRF----------------SSAFSALAETLDNQEEREKL 119 +N + KV+ LI RF + + LA L + RE+L Sbjct: 73 ELNQL-ALLDIKVNASPGWLIERFVQTYESQIVRREYIAQTDYYKTLAAALSDPLARERL 131 Query: 120 TIE-----PSVKNQQL-------PLTVSYVGQTAEGAQMK---LAQYIQQVDDKVNQELE 164 ++KN QL T +G +A +Q L YI V +V +L Sbjct: 132 LSSLAQKAFTLKNSQLDQATESKEYTYYRLGVSARSSQEAHALLQGYIDFVAARVVDDLR 191 Query: 165 KDLKDNI--ALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 ++K+ + L R+ + L Q + +Q ++IR++ +L A A ++KP + G Sbjct: 192 YNIKNQLDQTLAREKARYQLTLQNLRNDQQ--VKIRRLDYSLAVAQAAGISKP-LYGNGA 248 Query: 223 DITQDTLF--LLGSEALESMIKHEATRPLVFSPN--YYQTRQNLLDIESLKVDDLDIHAY 278 D F LG+ L + E ++ + N ++Q + + + + DL I + Sbjct: 249 TFKDDDDFPISLGTNGLRQKLDIEKSQTDLTELNAGLKNSQQYIGRLSQVHLSDLKIQPF 308 Query: 279 RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 +Y+M P +P+++++PK A+ ++L+ + G ++ G VL R+A+ Sbjct: 309 KYLMLPSIPVQKEAPKGALIVLLSAMAGLLLSCGAVLMRHAI 350 >UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n=1 Tax=Pseudomonas entomophila L48 RepID=Q1ID96_PSEE4 Length = 346 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 72/308 (23%), Positives = 130/308 (42%), Gaps = 38/308 (12%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNA 76 +ID I+LLV L++ + ++ + AL + Y+ ++ + P IA N Sbjct: 13 EIDFIELLVVLFKEWLLVVKVASLVFALGLVYVFYVPSRYEAKLFTIPPTQNDIAQLN-- 70 Query: 77 MNVIYGQAAP------KVSDLQETLIGRFSSA-----------FSALAE----TLDNQEE 115 YG+ V D+ + + +S F +LAE +L + Sbjct: 71 ----YGRGGSAELPLISVGDVYSSYVRNLNSESMRMEFFNDVYFPSLAEKQKTSLRSDLY 126 Query: 116 RE---KLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIA 172 R+ L+I K+Q ++ + E A + QY Q D+ +E+ K++ + Sbjct: 127 RQFFAALSILQGGKDQSDRYLITASSSSPEEAAKWVKQYTQMAGDRAKREVLKNIYSDAL 186 Query: 173 LGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI--QQTGEDITQDTLF 230 + NL+ +R ++ A+ ++D RI ++ EAL A + KP I + + + Sbjct: 187 VKADNLEKQIRREQESARRERDDRIARLTEALVIARSVGLVKPPIISAELTAQMNGSLTY 246 Query: 231 LLGSEALESMI----KHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPML 286 + GS+ALE+ I K + P F N Q + SL++D I Y+ ++ Sbjct: 247 MRGSDALEAEIANLKKRSSDDP--FISNLRQREAEVSFYRSLRIDPALIEVYQQDGDLIV 304 Query: 287 PIRRDSPK 294 P R SPK Sbjct: 305 PDRPVSPK 312 >UniRef50_P44063 Uncharacterized protein HI0866 n=7 Tax=Haemophilus influenzae RepID=Y866_HAEIN Length = 207 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 44/203 (21%), Positives = 97/203 (47%), Gaps = 26/203 (12%) Query: 129 QLPLTVSYVGQTAEGAQMKLAQYIQQVD----DKVNQELEKDLK---DNIALGRKNLQDS 181 ++ L +++ +T + AQ L +Y+ V ++ NQE ++ D + ++ ++++ Sbjct: 3 KIALKITFSAETPKYAQSVLTEYVNFVSQYSLNQTNQEFKQGFNLRLDELRFSKEQIEEN 62 Query: 182 LRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTL------FLLGSE 235 L E+K +++ + AL A +A + G +I+ L F+L + Sbjct: 63 LT-------EEKKVQVENLTNALDIAKKAGIKD---FSRGNNISDSKLADGTYLFILAEK 112 Query: 236 ALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVD-DL--DIHAYRYVMKPMLPIRRDS 292 L++ + P+V+ NYY T + L + L +L D+ Y Y+ P P+ +D+ Sbjct: 113 YLQAQLDIAKNTPVVYPANYYITDRQLFKLNKLASQLELVEDVKTYYYLSSPDYPVVKDN 172 Query: 293 PKKAITLILAVLLGGMVGAGIVL 315 PK+++ L + ++G ++ +L Sbjct: 173 PKRSLILAIGFIIGILLPTFFIL 195 >UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJF5_9GAMM Length = 353 Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 80/351 (22%), Positives = 159/351 (45%), Gaps = 42/351 (11%) Query: 11 QNHDPEQ-----IDLIDLLVQLWRGKMTII-ISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 Q H PE IDL L +QLWR K+ I+ I+ ++ + A Y ++ + S+A++ Sbjct: 3 QKHSPEHPLNDHIDLFFLFLQLWRSKLLILGITALITLCGA-AYSFLSTPIYQSSAVLAS 61 Query: 65 P---DVGQIAGYNNAMN-VIYGQAAPK---VSDLQETLIG-----RFSSAFSALAETLDN 112 P D+ +I + + +IY + A + +D+ I R+ ++F + E LD+ Sbjct: 62 PSESDLIEIRKIHTLLQQIIYSETASEEASTTDIFGQFISALNSNRYKNSFLSKPELLDH 121 Query: 113 ---------QEERE-----KLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDK 158 Q +E K+T+ + + + T+S ++ E + L +YI + Sbjct: 122 FRNDNTTQLQARKEFNRALKVTLPDTEEINHI--TISLRTKSPELSSSWLNEYISFAHQQ 179 Query: 159 VNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQ 218 ++EL +L+ I + NL ++++++ I+ I+EAL AN+ + P Sbjct: 180 FSKELTNNLQARIHAAQNNLLLTIQSKKANYHSNLIEEIKSIEEALIIANEIGLVNPLKT 239 Query: 219 QT--GEDITQDTL---FLLGSEALESMIKHEATRP--LVFSPNYYQTRQNLLDIESLKVD 271 +T G+ D + + LGS++L + + R L P + L + ++ +D Sbjct: 240 ETNFGKQHIIDQMRGIYRLGSKSLNAELNALKAREKNLDNIPGLSDEKLKLELLANIDLD 299 Query: 272 DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 I A + + P+K I ++L+++ G ++G VL N +R+ Sbjct: 300 SKLISAMILDLAAEPAPKPIEPRKTIIILLSIVAGLLIGIMTVLAGNLVRH 350 >UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z8B9_PHOPR Length = 349 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 68/330 (20%), Positives = 148/330 (44%), Gaps = 49/330 (14%) Query: 32 MTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDL 91 + I+ S++ I +I Y ++E W+S+ IIT+ + ++ N ++ ++ AA K L Sbjct: 29 LLILCSLLTGIVASI-YAFNSQEWWSSSEIITEANYNDLSSLRNDVSPLFIVAA-KTEKL 86 Query: 92 QETL---------IGRFSSAFSALAETLDN------------QEEREK------LTIEPS 124 ++ I ++ + L N +EE++K + + Sbjct: 87 EKIFSPNKIFIDFINEYNKPLTKSEFILSNDLLKIKMSNQKLEEEQQKNAFVKFWSNKIK 146 Query: 125 VKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIA--LGRKNLQDSL 182 K Q + + +AE +Q+ L+QY + V ++V + D+K I + +++ + Sbjct: 147 YKKQGDNFKLIFESNSAEESQLLLSQYSKFVHERVKNNIIDDVKSRIVSLVSLLEVKNDV 206 Query: 183 RTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFL---LGSEALES 239 + V A + ++ I ++ AL + + P G++ FL LGS+AL Sbjct: 207 LNEAVKANIKLEVEITKL--ALSVTKASNFSNPIENVNGDN------FLPIELGSKALSE 258 Query: 240 MIKHEATRPL----VFSPNYYQTRQNLLDIESLKVD-DLDIHAYRYVMKPMLPIRRDSPK 294 K++ + +F P ++ + + + + V+ +++ + YV LP+ D PK Sbjct: 259 --KYKVLSAVDDFSIFDPEIHRIKSEIKMLNDIDVNYEMEFNVIGYVNVAELPLNSDKPK 316 Query: 295 KAITLILAVLLGGMVGAGIVLGRNALRNYN 324 +++ +I+ + +G +G I + R + R YN Sbjct: 317 RSLIVIIGLFIGLFLGCVISVYRESSRYYN 346 >UniRef50_Q8KN75 Wzz n=1 Tax=Pseudomonas aeruginosa RepID=Q8KN75_PSEAE Length = 344 Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 75/333 (22%), Positives = 145/333 (43%), Gaps = 41/333 (12%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN-- 74 QIDL++L + R K I ++A ALA+ Y ++ + + A + P + +I+G+N Sbjct: 15 QIDLVELAQGILRQKWLIASFFLLATALAVVYAFYSRPIYEARASVLPPSLNEISGFNLG 74 Query: 75 ---NAMNVIYGQAAPKVSDL-------QETLIGRFSSAFSAL-----AETLDNQEER--E 117 + + V + + D+ +ET F + AE+LD + + Sbjct: 75 RKESDLGVF---SVKDIYDVFIRNLMAEETRQNFFKEKYLPTLGDKGAESLDALYNKFND 131 Query: 118 KLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKN 177 +L I+ SV L +S V ++ A + YI+ V E+ K++K ++ + N Sbjct: 132 ELQIKASVDGSGRYL-ISAVAHESDTAAYLVDSYIEMVAGISKNEMLKNIKRDLHVKSVN 190 Query: 178 LQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI------QQTGEDITQDTLFL 231 L+ + +A+ +++ I +++EAL+ A ++ P +Q + + +++ Sbjct: 191 LEQQINIMRAMAKTRREDTILRLREALKIAEALKIENPPSFEGQTERQLSSIMIGELMYM 250 Query: 232 LGSEALESMIK----HEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYR---YVMKP 284 G++AL + I E+ + Q R L L D+ + YR V Sbjct: 251 RGAKALRAEISSLEARESDDSFIGGLRALQERYALYT--KLSPDESQVSVYRKDGVVETS 308 Query: 285 MLPIRRDSPKKAITLILAVLLGGMVGAGIVLGR 317 PI+ PKK I ++L + G +G + L R Sbjct: 309 DKPIK---PKKLIIIVLGAVFGIFLGCLVGLLR 338 >UniRef50_C3K6I8 Conserved hypothetical chain length determinant protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K6I8_PSEFS Length = 218 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 N + + HD ++IDLI L+ LW K+TII + +V A+ A + E+WT++ IT+P Sbjct: 5 TNSNARPHD-DEIDLIPLIQTLWNSKITIIATTVVGAVAALTLSATSPEQWTASTYITKP 63 Query: 66 DV 67 + Sbjct: 64 SL 65 >UniRef50_Q31F07 Lipopolysaccharide biosynthesis protein Wzz n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31F07_THICR Length = 364 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 85/348 (24%), Positives = 150/348 (43%), Gaps = 47/348 (13%) Query: 19 DLIDLLVQLWRG----KMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN 74 D IDL +LW G K+T+ +S ++ I L Y + S A + P +I N Sbjct: 18 DEIDLF-ELWNGLVQEKLTVFLSFLMIIGLGTIYAFSVTPVYKSDAYLLPPKASEIQDIN 76 Query: 75 NAMNVIYGQA-APKVSDL----QETLIGR-----FSSAFSALAETLDNQEEREKLTIEPS 124 +N G A V+D+ E L+ R F + +A + + +EK E Sbjct: 77 R-LNATLGIGDAYSVNDVFNTYTENLLSRARLLTFFKQHNLIAFYEPDFKNKEKEVREKE 135 Query: 125 VKNQQLPLTVSYVGQT--AEGA--------------QMK--LAQYIQQVDDKVNQELEKD 166 N V G T +GA Q+K L QYIQ++ + +++ D Sbjct: 136 F-NDSFSTFVEEFGITHPKDGAKRVMVEMTLPVDADQVKEFLTQYIQKIRIETRKQITTD 194 Query: 167 LKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDI-- 224 + + L + + + AQ+ ++ +I ++ E+++ A Q ++ +P +I Sbjct: 195 IFTRKQFLMQQLINQINAVKETAQKHREDKIARLDESIKVARQLKIKEPLSAGPAMNIQG 254 Query: 225 TQD---TLFLLGSEALES----MIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHA 277 Q+ L+ LG + LE+ + K + + R NLLD S++++ D+ Sbjct: 255 VQNQGLPLYYLGYQVLEAEKDVLKKRKTDDAFTGKLRELEERYNLLD--SVEING-DLFK 311 Query: 278 YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 V +P + PKKA+ L ++ +LG M+G I L R A++N A Sbjct: 312 VVNVDQPPEIGEKVKPKKALILAVSGVLGLMLGIFIALIRRAIKNRKA 359 >UniRef50_Q8KNB4 Wzz n=2 Tax=Pseudomonas aeruginosa RepID=Q8KNB4_PSEAE Length = 345 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 66/326 (20%), Positives = 138/326 (42%), Gaps = 38/326 (11%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN-- 74 ++DL+ L+ +LW K+ I+++ ++A+ + Y ++K + + P +G I G+N Sbjct: 6 EVDLVKLVKELWVNKVLILLTTLLALIGSFTYAYLSKPVYEYRVAVVPPALGSIEGFNIG 65 Query: 75 -----------NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREK----- 118 ++ I+ + + +E + AE+ D QEE K Sbjct: 66 RRENGLDAYTVRSIYAIFSRNLLSDENKKEFFYKIYLPQVGEGAESEDEQEEFYKKFSKE 125 Query: 119 LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNL 178 + I+P+ K TV G E +++ D+ E+ + + + Sbjct: 126 VKIDPANKPDADRYTVIVEGTKREVLATWAQAFVRLAADRAVHEVIDSAGRDFQVRNAAM 185 Query: 179 QDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI------QQTGEDITQDTLFLL 232 Q + + +A+ ++D RI +++EAL A ++ P + QQ + D +++ Sbjct: 186 QSRITVLQNMAKGRRDDRIARLKEALLIAESLKIDGPPLIEGASEQQLSSIMDGDLMYMR 245 Query: 233 GSEALESMIKHEATRPL--VFSPNYYQTRQNLLDIESLKVDDLDIHAYR------YVMKP 284 G++AL + I + +R + F P ++ L SL VD + Y+ + +P Sbjct: 246 GAKALRAEINNLESRSVDAPFIPELRTLQEKLSWNSSLSVDSDAVAVYKEDEGLSFSNQP 305 Query: 285 MLPIRRDSPKKAITLILAVLLGGMVG 310 + PKK + + + L G ++G Sbjct: 306 I------KPKKILIVTIGTLAGLIIG 325 >UniRef50_Q02PW5 O-antigen chain length regulator n=19 Tax=Pseudomonas aeruginosa RepID=Q02PW5_PSEAB Length = 360 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 62/267 (23%), Positives = 107/267 (40%), Gaps = 44/267 (16%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 S Q +ID I+L+ LW K + + LA Y ++K + + + P + Sbjct: 7 SRQTSKRNEIDFIELIQGLWSQKWLVFSLTFLGAVLAGSYAFLSKPVYEARVALLPPSLS 66 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIE---PSV 125 +AG+N A G VS + +S L ++ R + E PS+ Sbjct: 67 DVAGFNIARGRDSGLPPFTVSQV-----------YSVFTRNLQSEGTRRQFFREVYLPSL 115 Query: 126 KNQQ----------------------LP--LTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ 161 + ++ LP TV Q E A QY + Sbjct: 116 EERKGSIDGLYRAFSDDVSVNRPSKDLPERYTVILNRQDPEQAAKWAKQYADLAALRSMD 175 Query: 162 ELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKP-----Q 216 E+ + + + + +N+ + T V +E+++ RI +++EALQ A V KP Q Sbjct: 176 EMRGNAQRELEVKSRNILQQIDTLRQVVKERRNDRIVRLKEALQVARAVGVEKPPLIGAQ 235 Query: 217 IQQTGEDITQDTL-FLLGSEALESMIK 242 I Q I + +L ++ G++ALE+ IK Sbjct: 236 IDQQLSAIMEGSLMYMRGTKALEAEIK 262 >UniRef50_Q0FE97 OtnB protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FE97_9RHOB Length = 310 Score = 47.8 bits (112), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 48/181 (26%), Positives = 83/181 (45%), Gaps = 32/181 (17%) Query: 12 NHDP----EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII----- 62 NHD ++IDL DL LWRGK+ II+ IV++ A +L A+ K+T + Sbjct: 3 NHDKSLYRDEIDLKDLFSALWRGKIFIILVSIVSVFFASFHLQSAERKYTIEYNLKPVGE 62 Query: 63 --TQPDVGQIAGY------------NNAMNVIYG-----QAAPKVSDLQETLIGRFSSAF 103 T P + + G+ NN +N+ + A + + ++ + FSS + Sbjct: 63 TKTSPSLSGLGGFASIAGIQLPTSSNNDLNIFKSLITSVEVAEIIFENKKIIKDIFSSEW 122 Query: 104 SALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQEL 163 +A +L+N R+K + V N + LT + +LA +I Q + ++N+E Sbjct: 123 NA---SLNNYSRRQKTKAQTLVGNVKELLTGNKAANYVPPNPRRLAIFITQ-NVQINEEK 178 Query: 164 E 164 E Sbjct: 179 E 179 >UniRef50_A1SRR6 Chain length determinant protein-like protein n=2 Tax=Psychromonas RepID=A1SRR6_PSYIN Length = 347 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 58/203 (28%), Positives = 102/203 (50%), Gaps = 15/203 (7%) Query: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ-ELEKDLKDNIALGRKNLQ 179 I S+ +Q L +S+ T E + L +YI + + V + +LEK L I + LQ Sbjct: 141 INASLNSQTSELALSFRSATKESSAELLNEYILFIGENVRENQLEKFLLF-IDSAKNELQ 199 Query: 180 DSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQ--IQQTGEDITQDTLFLLGSEAL 237 SL+ E A+ + + +++ + A Q A+ + + + Q + + GE + LG +AL Sbjct: 200 VSLQMTEQKARRELAVLLQKTEYAYQIASHSGLVEYQANLNKEGELFQIN----LGEKAL 255 Query: 238 ESMIK-HEATRPL-VFSPNYYQTRQNLLDIESLKV-DDLDIHAYRY--VMKPMLPIRRDS 292 ++ I ++ + L V P+ L + L+ D+ YRY V++P P+ R + Sbjct: 256 KAKIDVLKSIQDLSVLEPSLAIMTITLDALNKLEFSDNSSFTPYRYLEVVEP--PLNRSA 313 Query: 293 PKKAITLILAVLLGGMVGAGIVL 315 PK+A+ +ILA LL GM+ I L Sbjct: 314 PKRALIVILATLLAGMLSIFIAL 336 >UniRef50_A4C8G6 OtnB protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C8G6_9GAMM Length = 308 Score = 47.4 bits (111), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 76/328 (23%), Positives = 138/328 (42%), Gaps = 53/328 (16%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 ++I+L L+ LW+GK+ I+ VI+ A ++ Y + ST ++T D Q +G + Sbjct: 10 DEIELTQLISALWQGKILIVGLVILCSACSVFYALSLPNIYKSTVLLTAADESQNSGMSK 69 Query: 76 AMNVIYGQAAPKVSDLQETLIGRFSSAF------SALAETLDNQEER------------- 116 + G AA L + + + + A + +AE +D + Sbjct: 70 LNSQFGGLAAMAGVKLGSSGVDKSALALEIIKSHAFIAEFIDKNNLKPLIMAADNWDLGT 129 Query: 117 EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQEL-EKDLKDNIALG- 174 K++ +PSV N AE I ++ + +QE+ EK +K+++++ Sbjct: 130 NKVSYKPSVYN-------------AESKVWVREAKIPRLPEPSSQEVHEKFIKEHLSINS 176 Query: 175 -RKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLG 233 +K+ S+ V KD I + L A A++ K I + + I T LG Sbjct: 177 DKKSNLVSISIFHVSPYVAKD-----IADKLVVAINAKIKKDDIDEANKSIAYLTS-ALG 230 Query: 234 SEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSP 293 A+ M K +F Q Q + + D + ++ + ++ +DSP Sbjct: 231 QTAVADMQK-------IFYELIEQQEQT-----KMLANARDQYVFKVIDPAVVAELKDSP 278 Query: 294 KKAITLILAVLLGGMVGAGIVLGRNALR 321 K+AI I +LG ++G G VL R L+ Sbjct: 279 KRAIICIFGSVLGFLLGCGFVLIRYFLK 306 >UniRef50_C9P0B3 Lipopolysaccharide biosynthesis n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9P0B3_9VIBR Length = 320 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 21/51 (41%), Positives = 32/51 (62%) Query: 274 DIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 D +A++ + P++P + PK+A+ ILA L GG++G IVL R A R N Sbjct: 269 DEYAFKVIDPPVVPEEKVGPKRALICILATLFGGILGVAIVLIRYAFRREN 319 >UniRef50_A7I0H6 Chain length determinant protein n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I0H6_CAMHC Length = 370 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/311 (18%), Positives = 135/311 (43%), Gaps = 37/311 (11%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAG 72 + ++IDL++L LW GK+ II+ +V + + I Y +A + ++A++ ++ Sbjct: 7 YKDDEIDLVELFATLWNGKIKIIVITVVFLVVGILYTLIATPWYKASALV------EVGY 60 Query: 73 YNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPL 132 YN N G + + + +I + + + L + ++ ++ K E +KN Sbjct: 61 YNTNEN---GVVKNVMLEEPKNIIEKLKTRYIDLLKDVEGKDVYVKSVNE--IKNNNKFF 115 Query: 133 TVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQ 192 ++ +G++ E A + + IQ V D+ N+ ++ + + N++D ++ + + Sbjct: 116 SIEVLGKSNEKAVKMIDEMIQSVSDEHNKIIDGYISSQ-KVKLANIEDQIKVLQNDKMGE 174 Query: 193 KDLRIRQIQEALQYANQAQVTK--PQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLV 250 + +I +++ LQ + +Q+ +++T + E +++ ++ L Sbjct: 175 TENQINNVEQNLQMQKAGALNDILSALQKELKELTD----IQKIELKNTLLGQKSVIELT 230 Query: 251 FSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVG 310 P Y+ + I + K + PKK I L +A+L G MVG Sbjct: 231 LEPFNYKNTSVVSQIITSK-------------------HPEKPKKLIILAVALLAGAMVG 271 Query: 311 AGIVLGRNALR 321 VL + ++ Sbjct: 272 VFWVLFADFMK 282 >UniRef50_C4K3Z7 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3Z7_HAMD5 Length = 308 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 37/60 (61%) Query: 265 IESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 ++S+K+ D+ I + Y+ KP P+++DSP+ A ++L+ + G MV VL ++ L N Sbjct: 247 LQSIKLSDIKIIPFEYLQKPNEPVKKDSPQSAFIILLSGMAGLMVSMFYVLVQHYLSQRN 306 >UniRef50_A5UI14 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae RepID=A5UI14_HAEIG Length = 167 Score = 42.0 bits (97), Expect = 0.029, Method: Compositional matrix adjust. Identities = 44/194 (22%), Positives = 82/194 (42%), Gaps = 48/194 (24%) Query: 129 QLPLTVSYVGQTAEGAQMKLAQYIQQVD----DKVNQELEKDLKDNIALGRKNLQDSLRT 184 ++ L +++ +T + AQ L +Y+ V+ ++ NQE ++ N+ L D LR Sbjct: 3 KIALKITFSAETPKYAQSVLTEYVNFVNQYSLNQTNQEFKQGF--NLRL------DELRF 54 Query: 185 QEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHE 244 + QI+E L A + QV E L + + Sbjct: 55 SK-----------EQIEENLTEAKKVQV----------------------ENLTNALDIA 81 Query: 245 ATRPLVFSPNYYQTRQNLLDIESLKVD-DL--DIHAYRYVMKPMLPIRRDSPKKAITLIL 301 P+V+ NYY T + L + L +L D+ Y Y+ P P+ +D+ K+A+ L + Sbjct: 82 KNTPVVYPANYYITDRQLFKLNKLASQLELVEDVKTYYYLSSPDYPMVKDNSKRALILAI 141 Query: 302 AVLLGGMVGAGIVL 315 ++G ++ +L Sbjct: 142 GFIIGILLPTFFIL 155 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P35272 Chain length determinant protein n=110 Tax=Enter... 354 2e-96 UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmon... 307 3e-82 UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enter... 222 1e-56 UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10... 222 1e-56 UniRef50_P26266 Ferric enterobactin transport protein fepE n=158... 220 5e-56 UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yers... 220 6e-56 UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=1... 219 8e-56 UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Pr... 219 1e-55 UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=En... 218 2e-55 UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Provide... 216 1e-54 UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannhei... 215 1e-54 UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=... 214 2e-54 UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 T... 211 2e-53 UniRef50_A5KZS4 Regulator of length of O-antigen component of li... 210 4e-53 UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersini... 209 9e-53 UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C... 208 2e-52 UniRef50_A7JUL8 O-antigen chain length determining protein n=2 T... 208 2e-52 UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 T... 206 7e-52 UniRef50_D0Z7Z5 Chain length determinant protein n=1 Tax=Edwards... 205 2e-51 UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photoba... 205 2e-51 UniRef50_UPI000197C816 regulator of length of O-antigen componen... 204 2e-51 UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0... 204 2e-51 UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropn... 204 3e-51 UniRef50_UPI000197BC0B ferric enterobactin transport protein Fep... 203 8e-51 UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio ... 203 9e-51 UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycete... 201 3e-50 UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 T... 201 4e-50 UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aerom... 199 8e-50 UniRef50_Q8KN75 Wzz n=1 Tax=Pseudomonas aeruginosa RepID=Q8KN75_... 199 1e-49 UniRef50_C9P0E2 Regulator of length of O-antigen component of li... 199 1e-49 UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae Re... 193 8e-48 UniRef50_Q02PW5 O-antigen chain length regulator n=19 Tax=Pseudo... 189 9e-47 UniRef50_Q8KNB4 Wzz n=2 Tax=Pseudomonas aeruginosa RepID=Q8KNB4_... 189 1e-46 UniRef50_Q31F07 Lipopolysaccharide biosynthesis protein Wzz n=1 ... 188 3e-46 UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n... 186 1e-45 UniRef50_UPI0001C34705 lipopolysaccharide biosynthesis protein n... 185 1e-45 UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuni... 180 6e-44 UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 T... 179 8e-44 UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 176 1e-42 UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Ph... 168 3e-40 UniRef50_A4C8G6 OtnB protein n=1 Tax=Pseudoalteromonas tunicata ... 152 1e-35 UniRef50_A1SRR6 Chain length determinant protein-like protein n=... 140 6e-32 UniRef50_P44063 Uncharacterized protein HI0866 n=7 Tax=Haemophil... 133 8e-30 UniRef50_C9P0B3 Lipopolysaccharide biosynthesis n=1 Tax=Vibrio c... 108 2e-22 UniRef50_Q0FE97 OtnB protein n=1 Tax=Rhodobacterales bacterium H... 91 7e-17 UniRef50_C3K6I8 Conserved hypothetical chain length determinant ... 72 3e-11 Sequences not found previously or not previously below threshold: UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersi... 144 3e-33 UniRef50_B0KTY6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 132 1e-29 UniRef50_Q1N5G1 Lipopolysaccharide biosynthesis n=1 Tax=Bermanel... 127 6e-28 UniRef50_Q1QWX5 Lipopolysaccharide biosynthesis n=1 Tax=Chromoha... 123 1e-26 UniRef50_C3KAZ7 Putative chain length determinant protein n=1 Ta... 117 4e-25 UniRef50_A7I0H6 Chain length determinant protein n=1 Tax=Campylo... 100 6e-20 UniRef50_A4Y8H9 Lipopolysaccharide biosynthesis n=30 Tax=Gammapr... 99 2e-19 UniRef50_A4BIX4 Putative uncharacterized protein n=1 Tax=Reineke... 97 7e-19 UniRef50_C4K3Z7 Regulator of length of O-antigen component of li... 97 7e-19 UniRef50_Q5R093 Chain length determinant protein n=1 Tax=Idiomar... 97 8e-19 UniRef50_C6MYW2 Putative Wzz n=1 Tax=Legionella drancourtii LLAP... 97 1e-18 UniRef50_A0B7Q9 Lipopolysaccharide biosynthesis n=1 Tax=Methanos... 96 2e-18 UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 T... 94 6e-18 UniRef50_A5UI14 Putative uncharacterized protein n=2 Tax=Haemoph... 93 2e-17 UniRef50_C7RAP5 Lipopolysaccharide biosynthesis protein n=1 Tax=... 89 3e-16 UniRef50_A3JJA1 Lipopolysaccharide biosynthesis n=1 Tax=Marinoba... 83 1e-14 UniRef50_B8KUX8 Chain length determinant protein n=1 Tax=gamma p... 81 4e-14 UniRef50_C1DT90 Ferric enterobactin transport protein n=1 Tax=Su... 81 6e-14 UniRef50_D0WWA9 Putative uncharacterized protein n=3 Tax=Vibrio ... 79 2e-13 UniRef50_C6NU30 Lipopolysaccharide biosynthesis n=1 Tax=Acidithi... 79 2e-13 UniRef50_Q1YPV1 OtnB protein n=1 Tax=gamma proteobacterium HTCC2... 78 5e-13 UniRef50_Q21IT7 Lipopolysaccharide biosynthesis n=1 Tax=Saccharo... 77 8e-13 UniRef50_A6F1J1 Chain length determinant protein n=1 Tax=Marinob... 77 9e-13 UniRef50_A6ASH0 OtnB protein n=10 Tax=Vibrio RepID=A6ASH0_VIBHA 73 1e-11 UniRef50_O66795 Putative uncharacterized protein n=1 Tax=Aquifex... 72 3e-11 UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinob... 72 3e-11 UniRef50_C7M6P7 Lipopolysaccharide biosynthesis protein n=2 Tax=... 71 7e-11 UniRef50_A8FXK9 Chain length determinant family protein n=1 Tax=... 69 2e-10 UniRef50_A6VA35 Chain length determinant protein n=7 Tax=Pseudom... 69 3e-10 UniRef50_B5JNI6 Chain length determinant protein n=1 Tax=Verruco... 68 4e-10 UniRef50_C4KCI7 Lipopolysaccharide biosynthesis protein n=1 Tax=... 68 4e-10 UniRef50_C1XU43 Chain length determinant protein n=1 Tax=Meiothe... 68 5e-10 UniRef50_C5V7I4 Lipopolysaccharide biosynthesis protein n=1 Tax=... 67 7e-10 UniRef50_A4SDR7 Lipopolysaccharide biosynthesis protein n=2 Tax=... 67 1e-09 UniRef50_Q6AS85 Putative uncharacterized protein n=1 Tax=Desulfo... 66 2e-09 UniRef50_B8E0I3 Lipopolysaccharide biosynthesis protein n=1 Tax=... 65 3e-09 UniRef50_C5R191 Putative uncharacterized protein (Fragment) n=2 ... 65 5e-09 UniRef50_C1TR41 Uncharacterized protein involved in exopolysacch... 64 8e-09 UniRef50_Q5P6W3 Putative uncharacterized protein n=1 Tax=Aromato... 63 1e-08 UniRef50_D1B3W3 Lipopolysaccharide biosynthesis protein n=1 Tax=... 63 1e-08 UniRef50_Q2LWK4 Hypothetical membrane protein n=1 Tax=Syntrophus... 63 2e-08 UniRef50_Q2SJH6 Uncharacterized protein involved in exopolysacch... 62 2e-08 UniRef50_C0QSZ0 Chain length determinant protein n=1 Tax=Perseph... 62 2e-08 UniRef50_A7AKH2 Putative uncharacterized protein n=2 Tax=Parabac... 62 3e-08 UniRef50_A4EGG2 Succinoglycan biosynthesis transport protein exo... 62 3e-08 UniRef50_A3SUA0 Putative uncharacterized protein n=3 Tax=Rhodoba... 62 3e-08 UniRef50_B5YEW0 Lipopolysaccharide biosynthesis n=1 Tax=Dictyogl... 62 3e-08 UniRef50_B8D183 Lipopolysaccharide biosynthesis protein n=1 Tax=... 62 4e-08 UniRef50_D0MHQ9 Capsular exopolysaccharide family n=1 Tax=Rhodot... 61 5e-08 UniRef50_B7J3H5 Chain length determinant family protein n=2 Tax=... 61 5e-08 UniRef50_C6JIE9 Predicted protein n=2 Tax=Fusobacterium RepID=C6... 61 6e-08 UniRef50_B0K509 Lipopolysaccharide biosynthesis protein n=14 Tax... 61 7e-08 UniRef50_Q6AS84 Putative uncharacterized protein n=1 Tax=Desulfo... 61 8e-08 UniRef50_C8PNG3 Chain length determinant protein n=1 Tax=Trepone... 60 1e-07 UniRef50_B9L6P5 Chain length determinant protein n=2 Tax=Nautili... 60 1e-07 UniRef50_C1F864 Chain length determinant protein domain protein ... 60 1e-07 UniRef50_C9PY96 Chain length determinant protein n=1 Tax=Prevote... 59 2e-07 UniRef50_D0MG08 Lipopolysaccharide biosynthesis protein n=1 Tax=... 59 2e-07 UniRef50_C2M1S4 Putative uncharacterized protein n=1 Tax=Capnocy... 58 4e-07 UniRef50_B6B6U1 Succinoglycan biosynthesis transport protein Exo... 58 4e-07 UniRef50_Q2CAF1 Putative uncharacterized protein n=2 Tax=Rhodoba... 58 5e-07 UniRef50_A0NNU3 Putative MPA1 family protein n=1 Tax=Labrenzia a... 57 6e-07 UniRef50_D1PXM6 Chain length determinant protein n=1 Tax=Prevote... 57 6e-07 UniRef50_B2U7B5 Lipopolysaccharide biosynthesis protein n=1 Tax=... 57 8e-07 UniRef50_C8X034 Lipopolysaccharide biosynthesis protein n=1 Tax=... 57 1e-06 UniRef50_A4BYL5 Putative uncharacterized protein n=1 Tax=Polarib... 57 1e-06 UniRef50_B7AIQ3 Putative uncharacterized protein n=2 Tax=Bactero... 56 1e-06 UniRef50_A3WQF3 Putative tyrosine-protein kinase Wzc (Fragment) ... 56 2e-06 UniRef50_Q7NQT3 Putative uncharacterized protein n=1 Tax=Chromob... 56 2e-06 UniRef50_B2AHI0 Tyrosine-protein kinase n=5 Tax=Cupriavidus RepI... 56 2e-06 UniRef50_A9WAT9 Lipopolysaccharide biosynthesis protein n=2 Tax=... 56 2e-06 UniRef50_B9ZNL2 Lipopolysaccharide biosynthesis protein n=1 Tax=... 55 3e-06 UniRef50_P58764 Tyrosine-protein kinase etk n=184 Tax=Enterobact... 55 3e-06 UniRef50_Q39VZ4 Lipopolysaccharide biosynthesis n=5 Tax=Geobacte... 55 4e-06 UniRef50_B2TEB6 Exopolysaccharide transport protein family n=5 T... 55 5e-06 UniRef50_Q2T3S0 Chain length determinant protein domain protein ... 54 5e-06 UniRef50_A1WZL7 Lipopolysaccharide biosynthesis n=1 Tax=Halorhod... 54 5e-06 UniRef50_Q1ITA8 Lipopolysaccharide biosynthesis n=1 Tax=Candidat... 54 6e-06 UniRef50_B2PVB4 Putative uncharacterized protein n=3 Tax=Provide... 54 7e-06 UniRef50_Q7NZZ7 Putative uncharacterized protein n=1 Tax=Chromob... 54 9e-06 UniRef50_A3JHV6 Putative uncharacterized protein n=1 Tax=Marinob... 54 1e-05 UniRef50_Q74C20 Capsule polysaccharide export protein, putative ... 54 1e-05 UniRef50_Q1NTS5 Lipopolysaccharide biosynthesis n=1 Tax=delta pr... 53 1e-05 UniRef50_B0VFR9 Putative uncharacterized protein n=1 Tax=Candida... 53 1e-05 UniRef50_Q65SG7 GumC protein n=2 Tax=Pasteurellaceae RepID=Q65SG... 53 1e-05 UniRef50_B8F354 Tyrosine kinase, chain length regulator in capsu... 53 1e-05 UniRef50_D1BLU6 Lipopolysaccharide biosynthesis protein n=3 Tax=... 53 2e-05 UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannhei... 53 2e-05 UniRef50_B2JKP4 Exopolysaccharide transport protein family n=1 T... 52 2e-05 UniRef50_C9LJ77 Chain length determinant protein n=1 Tax=Prevote... 52 2e-05 UniRef50_Q1YH82 Possible exopolysaccharide biosynthesis/transpor... 52 2e-05 UniRef50_Q39TL3 Lipopolysaccharide biosynthesis n=1 Tax=Geobacte... 52 2e-05 UniRef50_UPI00016A48EE exopolysaccharide transport protein famil... 52 3e-05 UniRef50_Q13NU9 Exopolysaccharide transport protein n=1 Tax=Burk... 52 3e-05 UniRef50_B2I037 ATPase n=12 Tax=Acinetobacter RepID=B2I037_ACIBC 52 3e-05 UniRef50_B1KCB3 Exopolysaccharide transport protein family n=2 T... 52 3e-05 UniRef50_D2QRK9 Lipopolysaccharide biosynthesis protein n=1 Tax=... 51 4e-05 UniRef50_A7JRK0 Lipopolysaccharide chain length determinant prot... 51 5e-05 UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1... 51 5e-05 UniRef50_B7RJK1 Protein-tyrosine kinase, putative n=3 Tax=Rhodob... 51 6e-05 UniRef50_C0VIY7 Protein tyrosine kinase n=4 Tax=Acinetobacter Re... 51 6e-05 UniRef50_A6TJR1 Lipopolysaccharide biosynthesis protein n=1 Tax=... 51 6e-05 UniRef50_B8GTU6 Putative uncharacterized protein n=1 Tax=Thioalk... 51 7e-05 UniRef50_C9MSS5 Chain length determinant protein n=2 Tax=Prevote... 51 7e-05 UniRef50_B3E8V9 Lipopolysaccharide biosynthesis protein n=4 Tax=... 51 8e-05 UniRef50_Q220Z3 Lipopolysaccharide biosynthesis n=6 Tax=Betaprot... 51 8e-05 UniRef50_Q3K9H3 Tyrosine-protein kinase n=4 Tax=Pseudomonadaceae... 50 1e-04 UniRef50_C9RRK0 Capsular exopolysaccharide family n=1 Tax=Fibrob... 50 1e-04 UniRef50_A6BAV1 OtnB protein (Fragment) n=1 Tax=Vibrio parahaemo... 50 1e-04 UniRef50_C4FKG4 Lipopolysaccharide biosynthesis protein (Fragmen... 50 1e-04 UniRef50_Q97SJ6 Capsular polysaccharide biosynthesis protein cps... 50 1e-04 UniRef50_Q9CNG7 Putative uncharacterized protein n=1 Tax=Pasteur... 50 1e-04 UniRef50_B1M5X9 Lipopolysaccharide biosynthesis protein n=1 Tax=... 50 1e-04 UniRef50_B8CL31 Chain length regulator (Capsular polysaccharide ... 50 1e-04 UniRef50_O52788 Tyrosine-protein kinase ptk n=4 Tax=Acinetobacte... 49 2e-04 UniRef50_B5ZNF2 Lipopolysaccharide biosynthesis protein n=8 Tax=... 49 2e-04 UniRef50_C6BDG9 Lipopolysaccharide biosynthesis protein n=1 Tax=... 49 2e-04 UniRef50_Q4JZ56 Capsular polysaccharide biosynthesis protein Wzd... 49 2e-04 UniRef50_Q489D4 Tyrosine-protein kinase n=7 Tax=Gammaproteobacte... 49 2e-04 UniRef50_D2RIR1 Lipopolysaccharide biosynthesis protein n=1 Tax=... 49 2e-04 UniRef50_Q21Z35 Lipopolysaccharide biosynthesis n=1 Tax=Rhodofer... 49 2e-04 UniRef50_A6UI93 Lipopolysaccharide biosynthesis protein n=2 Tax=... 49 3e-04 UniRef50_Q390Y9 Exopolysaccharide transport protein n=30 Tax=Bur... 49 3e-04 UniRef50_C5BJM9 Putative OtnB protein n=1 Tax=Teredinibacter tur... 49 3e-04 UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinob... 49 3e-04 UniRef50_C0BRP2 Putative uncharacterized protein n=2 Tax=Bifidob... 49 3e-04 UniRef50_Q72WQ0 Chain length determinant family protein n=4 Tax=... 49 3e-04 UniRef50_A6F1J4 Lipopolysaccharide biosynthesis n=1 Tax=Marinoba... 49 3e-04 UniRef50_D2PZ20 Lipopolysaccharide biosynthesis protein n=1 Tax=... 48 4e-04 UniRef50_B6C223 Chain length determinant protein n=1 Tax=Nitroso... 48 4e-04 UniRef50_Q84GX2 Orf41 n=3 Tax=Photorhabdus RepID=Q84GX2_PHOLU 48 4e-04 UniRef50_A0NMI4 Probable succinoglycan transport protein n=1 Tax... 48 4e-04 UniRef50_C6BLZ1 Putative uncharacterized protein n=2 Tax=Ralston... 48 4e-04 UniRef50_C5CQW3 Exopolysaccharide transport protein family n=1 T... 48 4e-04 UniRef50_Q15NN8 Protein-tyrosine kinase n=1 Tax=Pseudoalteromona... 48 4e-04 UniRef50_Q08U06 Chain length determinant protein n=1 Tax=Stigmat... 48 4e-04 UniRef50_C7LVW8 Capsular exopolysaccharide family n=1 Tax=Desulf... 48 5e-04 UniRef50_B6BQX7 Chain length determinant protein n=1 Tax=Candida... 48 5e-04 UniRef50_Q1QD59 Protein-tyrosine kinase n=3 Tax=Psychrobacter Re... 48 5e-04 UniRef50_A3DF66 Lipopolysaccharide biosynthesis n=4 Tax=Firmicut... 47 7e-04 UniRef50_B0VJW4 Putative Non-specific protein-tyrosine kinase n=... 47 7e-04 UniRef50_Q13QA8 Protein-tyrosine kinase n=3 Tax=Burkholderia Rep... 47 7e-04 UniRef50_Q0YTR7 Lipopolysaccharide biosynthesis n=1 Tax=Chlorobi... 47 8e-04 UniRef50_A8UTW4 Putative uncharacterized protein n=1 Tax=Hydroge... 47 0.001 UniRef50_Q7UF18 Similar to type 8 capsule gene Cap8B n=1 Tax=Rho... 47 0.001 UniRef50_B3EME9 Capsular exopolysaccharide family n=3 Tax=Chloro... 47 0.001 UniRef50_Q7U940 Putative uncharacterized protein n=1 Tax=Synecho... 47 0.001 UniRef50_B1XZS2 Lipopolysaccharide biosynthesis protein n=1 Tax=... 47 0.001 UniRef50_A4C494 Exopolysaccharide biosynthesis protein, putative... 46 0.001 UniRef50_Q0AAI3 Putative uncharacterized protein n=1 Tax=Alkalil... 46 0.002 UniRef50_A9W3V2 Lipopolysaccharide biosynthesis protein n=6 Tax=... 46 0.002 UniRef50_A4JQJ9 Lipopolysaccharide biosynthesis n=1 Tax=Burkhold... 46 0.002 UniRef50_C5C9H1 Capsular exopolysaccharide biosynthesis protein ... 46 0.002 UniRef50_B8D182 Lipopolysaccharide biosynthesis protein n=1 Tax=... 46 0.002 UniRef50_B5WI70 Capsular exopolysaccharide family n=1 Tax=Burkho... 46 0.002 UniRef50_B8IGI5 Lipopolysaccharide biosynthesis protein n=1 Tax=... 46 0.002 UniRef50_B9JKJ4 Exopolysaccharide polymerization protein n=3 Tax... 46 0.002 UniRef50_Q2S4Z4 Chain length determinant protein n=1 Tax=Salinib... 46 0.002 UniRef50_B3CC43 Putative uncharacterized protein n=3 Tax=Bactero... 46 0.002 UniRef50_Q0FSG4 Exopolysaccharide polymerization/transport prote... 46 0.002 UniRef50_B2J3C6 Lipopolysaccharide biosynthesis protein n=5 Tax=... 45 0.002 UniRef50_A0LGD5 Lipopolysaccharide biosynthesis n=1 Tax=Syntroph... 45 0.003 UniRef50_C5NWJ9 Capsular polysaccharide biosynthesis protein Cps... 45 0.003 UniRef50_Q0AW94 Capsular polysaccharide biosynthesis protein-lik... 45 0.003 UniRef50_C7PF50 Capsular exopolysaccharide family n=1 Tax=Chitin... 45 0.003 UniRef50_C8S386 Capsular exopolysaccharide family n=1 Tax=Rhodob... 45 0.003 UniRef50_C4DPG8 Chain length determinant protein n=1 Tax=Stackeb... 45 0.003 UniRef50_C3KRX1 CPSC/CAPB subfamily ATPase n=5 Tax=Rhizobiales R... 45 0.003 UniRef50_B2JS55 Capsular exopolysaccharide family n=1 Tax=Burkho... 45 0.004 UniRef50_C4Z673 Non-specific protein-tyrosine kinase n=1 Tax=Eub... 45 0.004 UniRef50_B2TDM9 Exopolysaccharide transport protein family n=1 T... 45 0.004 UniRef50_B2T0D7 Exopolysaccharide transport protein family n=6 T... 45 0.004 UniRef50_B5S582 Putative tyrosine-protein kinase epsb , polysacc... 45 0.004 UniRef50_B1FTG2 Exopolysaccharide transport protein family n=4 T... 45 0.004 UniRef50_UPI0001908773 hypothetical protein RetlI_29099 n=1 Tax=... 45 0.004 UniRef50_B2SUL4 Exopolysaccharide xanthan biosynthesis chain len... 45 0.004 UniRef50_Q3KCE9 Putative exopolysaccharide biosynthesis protein ... 45 0.005 UniRef50_D2NP25 Thymidylate kinase n=2 Tax=Rothia mucilaginosa R... 45 0.005 UniRef50_Q7NII1 Gll2202 protein n=1 Tax=Gloeobacter violaceus Re... 44 0.005 UniRef50_B2A1C4 Lipopolysaccharide biosynthesis protein n=1 Tax=... 44 0.005 UniRef50_A3V8G8 Protein-tyrosine kinase n=1 Tax=Loktanella vestf... 44 0.005 UniRef50_UPI000182721C cryptic autophosphorylating protein tyros... 44 0.006 UniRef50_A9ANS7 Capsular exopolysaccharide family n=45 Tax=Burkh... 44 0.006 UniRef50_Q0VR43 Tyrosine-protein kinase n=1 Tax=Alcanivorax bork... 44 0.006 UniRef50_A3VCH3 Putative uncharacterized protein n=1 Tax=Rhodoba... 44 0.006 UniRef50_Q2C5X1 Chain length regulator (Capsular polysaccharide ... 44 0.007 UniRef50_Q1WTC7 Chain length regulator n=2 Tax=Lactobacillus sal... 44 0.007 UniRef50_B7CA79 Putative uncharacterized protein n=1 Tax=Eubacte... 44 0.008 UniRef50_Q1ING6 Protein-tyrosine kinase n=1 Tax=Candidatus Korib... 44 0.008 UniRef50_B1ZLN5 Lipopolysaccharide biosynthesis protein n=1 Tax=... 44 0.008 UniRef50_A7HXH3 Non-specific protein-tyrosine kinase n=1 Tax=Par... 44 0.009 UniRef50_A4EII1 Protein-tyrosine kinase n=1 Tax=Roseobacter sp. ... 44 0.009 UniRef50_Q1QWU3 Protein-tyrosine kinase n=3 Tax=Gammaproteobacte... 44 0.009 UniRef50_A4VKD6 Tyrosine-protein kinase n=9 Tax=cellular organis... 44 0.009 UniRef50_UPI0001BC3702 exopolysaccharide tyrosine-protein kinase... 44 0.010 UniRef50_A4BR88 Putative uncharacterized protein n=1 Tax=Nitroco... 44 0.010 UniRef50_A0NRN0 Lipopolysaccharide biosynthesis n=1 Tax=Labrenzi... 44 0.010 UniRef50_P33698 Succinoglycan biosynthesis transport protein exo... 44 0.010 UniRef50_C3J7R8 Tyrosine-protein kinase ptk n=2 Tax=Bacteria Rep... 44 0.010 UniRef50_Q319N0 Uncharacterized protein involved in exopolysacch... 44 0.010 UniRef50_A1VT11 Lipopolysaccharide biosynthesis n=1 Tax=Polaromo... 44 0.010 UniRef50_Q7UU04 Probable exopolysaccharide biosynthesis protein ... 44 0.010 UniRef50_A3VRW3 Polysaccharide chain length determinant protein ... 44 0.010 UniRef50_Q3SM15 Polysaccharide chain length determinant protein ... 43 0.011 >UniRef50_P35272 Chain length determinant protein n=110 Tax=Enterobacteriaceae RepID=WZZB3_ECOLX Length = 325 Score = 354 bits (909), Expect = 2e-96, Method: Composition-based stats. Identities = 315/326 (96%), Positives = 320/326 (98%), Gaps = 1/326 (0%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA Sbjct: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLT 120 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEE EKLT Sbjct: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEPEKLT 120 Query: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD 180 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD Sbjct: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD 180 Query: 181 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESM 240 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQT +D+TQDT+FLLGSEALESM Sbjct: 181 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQT-QDVTQDTMFLLGSEALESM 239 Query: 241 IKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLI 300 IKHEATRPLVFS NYYQTRQNLLDI++L VD LDIHAYRYVMKP LPIRRDSPKKAITLI Sbjct: 240 IKHEATRPLVFSSNYYQTRQNLLDIDNLDVDKLDIHAYRYVMKPTLPIRRDSPKKAITLI 299 Query: 301 LAVLLGGMVGAGIVLGRNALRNYNAK 326 LAVLLGGMVGAGIVLGRNALRNYNAK Sbjct: 300 LAVLLGGMVGAGIVLGRNALRNYNAK 325 >UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmonella enterica RepID=WZZB_SALTY Length = 327 Score = 307 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 230/326 (70%), Positives = 279/326 (85%), Gaps = 1/326 (0%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M V++N SG+ +DPEQIDLI+LL+QLWRGKMTII++VI+AI LA+GYL +AKEKWTSTA Sbjct: 1 MTVDSNTSSGRGNDPEQIDLIELLLQLWRGKMTIIVAVIIAILLAVGYLMIAKEKWTSTA 60 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLT 120 IITQPD Q+A Y NA+NV+YG APK+S++Q I RFSSAFSAL+E LDNQ+EREKLT Sbjct: 61 IITQPDAAQVATYTNALNVLYGGNAPKISEVQANFISRFSSAFSALSEVLDNQKEREKLT 120 Query: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD 180 IE SVK Q LPL+VSYV TAEGAQ +LA+YIQQVD++V +ELE DLKDNI L K LQ+ Sbjct: 121 IEQSVKGQALPLSVSYVSTTAEGAQRRLAEYIQQVDEEVAKELEVDLKDNITLQTKTLQE 180 Query: 181 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESM 240 SL TQEVVAQEQKDLRI+QI+EAL+YA++A++T+ Q +D+TQDT+FLLGS+AL+SM Sbjct: 181 SLETQEVVAQEQKDLRIKQIEEALRYADEAKITQ-PQIQQTQDVTQDTMFLLGSDALKSM 239 Query: 241 IKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLI 300 I++EATRPLVFSP YYQT+Q LLDI++LKV +H YRYVMKP LP+RRDSPK AITL+ Sbjct: 240 IQNEATRPLVFSPAYYQTKQTLLDIKNLKVTADTVHVYRYVMKPTLPVRRDSPKTAITLV 299 Query: 301 LAVLLGGMVGAGIVLGRNALRNYNAK 326 LAVLLGGM+GAGIVLGRNALR+Y K Sbjct: 300 LAVLLGGMIGAGIVLGRNALRSYKPK 325 >UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enterobacteriaceae RepID=B4F1Q0_PROMH Length = 372 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 76/345 (22%), Positives = 151/345 (43%), Gaps = 36/345 (10%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP---DVGQI 70 ++IDL +L L++ K II ++ + + +KWTS A IT+P ++ Q+ Sbjct: 25 QNDEIDLFELFSVLYKSKFVIIGITLLFAIVGFTVASFLPQKWTSQAAITKPMLDEMKQL 84 Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRFS------------SAFSALAETLDNQEEREK 118 N ++++ S + + I ++ + L +D+ +K Sbjct: 85 RATLNDLSLVDVDTGVNASSVYQKFINNYNSRVLREEYLVNTDYYKNLLAKMDDPTPLDK 144 Query: 119 LTIEPSVKNQQLPLT----------------VSYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 + ++ + + L +S+ T+E A L+ YI+ + KV E Sbjct: 145 RKLIETIVTKDINLKASDSKNSDEEFSGEINLSFTAPTSEEAYDLLSGYIRFISTKVRVE 204 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 ++ ++ D I + Q + + +++ +++++ AL+ AN A V KP I G Sbjct: 205 VKDEIDDQIERKLNHAQKAYQMDLERIANARNVNVQRLKYALEIANAAGVKKP-ISSEGA 263 Query: 223 DITQDTLF--LLGSEALESMIKH--EATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAY 278 I D + +G++AL S + T P S N+ +E +K+ DL + Sbjct: 264 QIKDDPDYSIAMGADALSSKLAITEAITDPTTVSSELKNRLYNIQQLEQIKLGDLQFVPF 323 Query: 279 RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 +Y++KP P ++D+PK+A+ L+ A +G ++ VL RN Sbjct: 324 KYMLKPYEPTKKDAPKRALILVGAAFVGFILSVMGVLLGYMARNR 368 >UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10 Tax=Yersinia RepID=C4UHK4_YERRU Length = 384 Score = 222 bits (565), Expect = 1e-56, Method: Composition-based stats. Identities = 71/368 (19%), Positives = 148/368 (40%), Gaps = 52/368 (14%) Query: 2 RVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAI 61 + N S + ++ID+ +L ++R K+ II+ ++ + + + +KWTST+I Sbjct: 14 KPNNYGFSDMSSSKDEIDIFELFTIIFRSKLKIILVTLIFLISGLVVSYILPQKWTSTSI 73 Query: 62 ITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTI 121 I Q+ + V D+ + + S + D+Q+ RE+ I Sbjct: 74 IVPAGEEQLQVLDKI------TINLAVLDINLGITSNY--LLSTFKQNFDSQDLREQYLI 125 Query: 122 EPSVKNQQL---------------------------------------PLTVSYVGQTAE 142 Q + +SY TA Sbjct: 126 NTDYFKQMMKDSPEDAIERRAVIENIVNNSIGSINPIKDKSGNDNEYRYYKLSYSASTAV 185 Query: 143 GAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQE 202 A+ L YI V+ VN ++ ++ + L + D + A+ +++I +++ Sbjct: 186 DARDLLQGYINFVNSTVNADVNLKIQRAVDLAKGMATDKYSLDLLRAKNSHEVKIERLKY 245 Query: 203 ALQYANQAQVTKPQIQQTGEDITQDTLF--LLGSEALESMIKHEA--TRPLVFSPNYYQT 258 A A+ A + KP + +G I+ D F +G++AL ++ E T + + Sbjct: 246 ASSIADVAGIKKP-VYSSGSQISDDPDFPITMGADALNRKLEIEKSITDLTTVNADLLNR 304 Query: 259 RQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 + L + +L++ +D+ ++Y+ +P P +RD+PK+ + ++L L G + G VL + Sbjct: 305 KLYLDKLNALEIPKVDVVPFKYLQQPTEPTKRDAPKRGLIMVLFALAGLVGSVGFVLVGH 364 Query: 319 ALRNYNAK 326 + + Sbjct: 365 FVSERERQ 372 >UniRef50_P26266 Ferric enterobactin transport protein fepE n=158 Tax=cellular organisms RepID=FEPE_ECOLI Length = 377 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 83/347 (23%), Positives = 150/347 (43%), Gaps = 38/347 (10%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 +IDL++L+ LWR K T++ V + + +KWTS A++T P+ Q Sbjct: 23 SNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQEL 82 Query: 74 NNAMNVIYGQAAPKVSDLQETLIGRFSSAF---SALAETLDNQ----------------- 113 + + D E F F S L E L + Sbjct: 83 EKSFTKLRVLDLDIKIDRTEAF-NLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELDL 141 Query: 114 -------EEREKLTIEPSVKNQQLP-----LTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ 161 E+ K + + K + P T+S+ T+E AQ L+ YI + V + Sbjct: 142 HRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVVK 201 Query: 162 ELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTG 221 E +++++ + + + ++ L + + Q D I+++ +L AN A + KP + G Sbjct: 202 ESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKP-VYSNG 260 Query: 222 EDITQDTLF--LLGSEALESMIKHEATRPLVFSPN--YYQTRQNLLDIESLKVDDLDIHA 277 + + D F LG++ +E ++ E V N + + + V+D++ Sbjct: 261 QAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFTP 320 Query: 278 YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 ++Y + P LP+++D P KAI +IL+ L+GGMV G VL R A+ + Sbjct: 321 FKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRK 367 >UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yersinia RepID=A4TP85_YERPP Length = 383 Score = 220 bits (560), Expect = 6e-56, Method: Composition-based stats. Identities = 77/356 (21%), Positives = 150/356 (42%), Gaps = 36/356 (10%) Query: 4 ENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT 63 N + S + +IDL ++ +++ K II+ + + + + +KWTSTAII Sbjct: 16 NNYDFSNVSSSRNEIDLFEIFSVVFKSKFKIILITLFFLISGLVVSYILPQKWTSTAIIA 75 Query: 64 QPDVGQIAGYNNA---MNVIYGQAAPKVSDLQETLIGRF------------SSAFSALAE 108 P Q+ + + V+ + + L T F ++ F L + Sbjct: 76 LPGDEQVQVLDELITNLTVLDIKVDVSANYLLSTFKQNFDSQDLREQYLVNTNYFKRLMK 135 Query: 109 TLDNQEEREKLTIE----------------PSVKNQQLPLTVSYVGQTAEGAQMKLAQYI 152 ++ IE +N+ +SY T A+ L I Sbjct: 136 NNPEDGLDKRALIERIVNENISSVNPLKDKTEGENEYRYYKLSYSASTPTDARDLLQGSI 195 Query: 153 QQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQV 212 V+ VN ++ + ++ + L + D + + A+ + ++I +++ A A+ A V Sbjct: 196 NYVNTIVNADVFRKIQRAVDLAKGIGTDKYSMELLKARNNQKVKIERLRYASSIADAAGV 255 Query: 213 TKPQIQQTGEDITQDTLF--LLGSEALESMIKHEATRPLVFSPN--YYQTRQNLLDIESL 268 KP + G I+ D F +GS+AL ++ E + + S N + L + L Sbjct: 256 KKP-VYSNGSAISDDPDFPITMGSDALNRKLEIEKSVIDLASINTELLNRKLYLDKLNRL 314 Query: 269 KVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 ++ +++I ++Y+ +P P +RD PK+A+ +IL L+G M G VL + +R Sbjct: 315 EIPNVNIVPFKYLQQPTEPTKRDVPKRALIVILFALVGLMGSVGFVLVEHFVRERK 370 >UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=174 Tax=Enterobacteriaceae RepID=WZZE_ECO57 Length = 348 Score = 219 bits (559), Expect = 8e-56, Method: Composition-based stats. Identities = 77/334 (23%), Positives = 145/334 (43%), Gaps = 28/334 (8%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 ++D+ L LW GK+ II + +A+ Y A+++W+STAI +P V + GY + Sbjct: 15 NELDIRGLFRTLWAGKLWIIGMGLAFALIALAYTFFARQEWSSTAITDRPTVNMLGGYYS 74 Query: 76 A------MNVIYGQAAPKVSDLQETLIGRFSSAFSALA----ETLDNQEEREK------- 118 ++V A+ + + F ++ L +++ Sbjct: 75 QQQFLRNLDVRSNMASADQPSVMDEAYKEFVMQLASWDTRREFWLQTDYYKQRMVGNSKA 134 Query: 119 -----------LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDL 167 + P + + +V + +TA A L QY+ + L +L Sbjct: 135 DAALLDEMINNIQFIPGDFTRAVNDSVKLIAETAPDANNLLRQYVAFASQRAASHLNDEL 194 Query: 168 KDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQD 227 K A ++ ++ QE VA+ D R+ I++AL+ A Q +++ E++ Sbjct: 195 KGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALKIAEQHNISRSATDVPAEELPDS 254 Query: 228 TLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLP 287 +FLLG L++ +++ F +Y Q R L + D YRY+ P P Sbjct: 255 EMFLLGRPMLQARLENLQAVGPAFDLDYDQNRAMLNTLNVGPTLDPRFQTYRYLRTPEEP 314 Query: 288 IRRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 ++RDSP++A +I+ ++GG++GAG+ L R + Sbjct: 315 VKRDSPRRAFLMIMWGIVGGLIGAGVALTRRCSK 348 >UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Providencia RepID=D1P4F6_9ENTR Length = 375 Score = 219 bits (557), Expect = 1e-55, Method: Composition-based stats. Identities = 90/350 (25%), Positives = 158/350 (45%), Gaps = 35/350 (10%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQ- 69 Q ++IDL+ L+ L++ K III +V AL+IG + +KWTS AII QP + Sbjct: 22 QLQKNDEIDLMALVAVLFKNKYLIIIFTVVITALSIGVVKTLPQKWTSEAIIIQPTSEET 81 Query: 70 --IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFS----------------ALAETLD 111 I+ + ++ + + + I ++ S + L + D Sbjct: 82 KEISEFAARLSALDFNIDLGSARIYNEFITQYRSKVNQEDYVRSTEYYQSLLAKLGDKND 141 Query: 112 NQEERE----------KLTIEPSVKNQQLP-LTVSYVGQTAEGAQMKLAQYIQQVDDKVN 160 QEE+ KL K+ + +S+ TA AQ L YI+ +V Sbjct: 142 VQEEQRLVNRIISDSIKLKYNAKEKDSDDSDIILSFTAPTAIEAQDLLNGYIRYTASQVR 201 Query: 161 QELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQT 220 + + ++ + I+ ++L+ Q D++I +++ A+ A A +T+P I + Sbjct: 202 KRFKTEIDNAISRQLIYSVEALKNDTAKIQIAYDVKIERLKRAITIAKAAGITRP-IARD 260 Query: 221 GEDITQDTLF--LLGSEALESMIKHEAT--RPLVFSPNYYQTRQNLLDIESLKVDDLDIH 276 I D + LGSEALE + E + S ++ ++ ++ L +LD Sbjct: 261 AVAINDDPDYPIALGSEALEEKLAIELKNRDLALISEKLQNSKMHIDNLNGLTTKELDFQ 320 Query: 277 AYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 R+++ P LPI +DSPK A+ + L +LG ++ VLGR+ RNYN + Sbjct: 321 PVRFILTPDLPIAKDSPKSALIVALGAILGLILSCAFVLGRDLYRNYNGQ 370 >UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=Enterobacteriaceae RepID=Q7N0P7_PHOLL Length = 367 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 75/344 (21%), Positives = 149/344 (43%), Gaps = 33/344 (9%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 + ++IDL +L L++ K+ II I+ + ++ +KW+S+A I +P + +I Sbjct: 21 SKQDDEIDLFELFSVLFQSKLLIITVTILFAVIGFVAASLMPQKWSSSASIVKPQLEEIQ 80 Query: 72 GYNNAMN---VIYGQAAPKVSD-------------LQETLIGRFSSAFSALAETLDNQEE 115 + + V+ Q + S L+E + + +AE+ D+ Sbjct: 81 PLKDILTKLEVLNLQPSVTSSSLYNNFLNNFNSRVLREEYLVNTEYFKNLVAESGDHSPL 140 Query: 116 REKLTIEPSVKNQQLP------------LTVSYVGQTAEGAQMKLAQYIQQVDDKVNQEL 163 ++ IE V + +++ TAE A L YI V V++++ Sbjct: 141 VKRKLIEKIVNDNISSSSKAEKDDENGETKLTFSAGTAEDAYNLLNGYIDYVSSVVHEQV 200 Query: 164 EKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGED 223 + +L D + + ++ + +++ AL AN A + KP I G Sbjct: 201 KSELSDMVKQKLNYSEGLYSVDLNRVNNIQEANVERLKHALSIANSAGIKKP-ISSEGAM 259 Query: 224 ITQDTLF--LLGSEALESMIKH--EATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYR 279 I D + LG++AL+ ++ E P + + + ++++LKVD ++ +R Sbjct: 260 IKDDPDYSIALGADALQRKLQITEEIKDPTLIDADLRNRLFYIKELKALKVDKVNFQPFR 319 Query: 280 YVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 Y+ P P +DSPK+ + LI + LG ++ VL R+ +R+ Sbjct: 320 YMQAPYEPTAKDSPKRLLILIGSAFLGLILAVVSVLIRHMVRSR 363 >UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q4F4_PROST Length = 372 Score = 216 bits (549), Expect = 1e-54, Method: Composition-based stats. Identities = 74/347 (21%), Positives = 151/347 (43%), Gaps = 35/347 (10%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 + ++IDL+ L L R K+ II+ +V ++I + +KW+STA++ P +I Sbjct: 23 SQQSDEIDLMALFAVLLRNKLLIIVITVVITLISIFVVFQLPQKWSSTAVVIPPSSEEIK 82 Query: 72 GYN------------------NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQ 113 N N Q KV+ + S + D + Sbjct: 83 DINTLSAQLSVLDVKIDLSAQQIFNAFIDQYRSKVNQEAYVRSTNYFKKLSEQVNSTDKE 142 Query: 114 EEREKLTI------------EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ 161 E+++L + + +++V T AQ L+ Y++ KV + Sbjct: 143 NEQQRLVNTIISNNIGLKDQSKEKNSTSSDIILTFVAPTPSEAQDLLSGYVRYTATKVRE 202 Query: 162 ELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTG 221 + +KD+++ IA ++ + + + + D+++ +++ A+ A A V KP + Sbjct: 203 QFKKDIQNAIAQQLVYANETFKQEVTKIRSEYDVKVERLKRAIDIAKAAGVRKPIV-SDS 261 Query: 222 EDITQDTLF--LLGSEALESMIKHEATRPLV--FSPNYYQTRQNLLDIESLKVDDLDIHA 277 I+ D + LG+EALE + E + + + + + ++ L +D LD Sbjct: 262 AIISDDPDYPIALGTEALEKKLAIELQNRDIALLNEDLQIRQHYIKNLSELDIDTLDFIP 321 Query: 278 YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 ++++ P LP ++DSPK + ++L+ +LG ++ VL R R+Y+ Sbjct: 322 AKFMLAPDLPTQKDSPKSVLIIMLSAILGFILSCAYVLSRELYRDYH 368 >UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65UU8_MANSM Length = 396 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 79/371 (21%), Positives = 152/371 (40%), Gaps = 53/371 (14%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + N ++ ++IDLIDL+ LW+ K+ +I++ +A Y AKE+WTS A Sbjct: 23 MNNTASMSPQNNNDEIDLIDLIKVLWQKKLVVILTSFFFALIAAIYAFTAKEQWTSKATT 82 Query: 63 TQPDVGQIA-------GYNNAMNVIYGQAAPKVSDLQET-----LIGRFSSAFSALAETL 110 P V + Y N +N+ + V +L F A ++ Sbjct: 83 IAPKVADMGYYLSLRSEYANILNIKEFTSKDVVDNLFNNFRVALFSNNMKREFFAQSKWF 142 Query: 111 DN--------QEEREKLTI------------EPSVKNQQLPLTVSYVGQTAEGAQMKLAQ 150 N ++ ++KL + L + +S+ +T + AQ L + Sbjct: 143 QNYANENAKDEDAKQKLLSDILDKSLIVTIPDIKKNPNALGINISFAAETPKEAQEVLTE 202 Query: 151 YIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQA 210 YI ++ V E + D +I + NL+ + + + +++ + AL A A Sbjct: 203 YINFINATVLTEDKIDFLADIKIAIDNLELQKDKIQRDTESVRQVQLENLTTALDIAKSA 262 Query: 211 QVTKP-----------------QIQQTGEDITQDT-LFLLGSEALESMIKHEATRPLVFS 252 + + QI T ++ + LF+LG + L++ + +V+ Sbjct: 263 GIKEYSKTSGNVSIPQFALGDAQIPFTDSKLSDGSYLFMLGEKYLQAQVDTLTNNKVVYP 322 Query: 253 PNYYQTRQNLLDIESLKVD---DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMV 309 ++Y + + + SL+ D + +Y Y+ P P RD PK+ + L++ +LGG++ Sbjct: 323 VSFYTIEKQVSLLNSLEQKANTDSKVTSYYYLTSPDYPTTRDWPKRVLLLLIGAVLGGVL 382 Query: 310 GAGIVLGRNAL 320 G VLG+ Sbjct: 383 GCLWVLGKQIF 393 >UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7N8_TOLAT Length = 372 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 80/347 (23%), Positives = 156/347 (44%), Gaps = 38/347 (10%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAG 72 D ++IDL++L LW+ K I + +A Y A+E WTS A+ P + +I Sbjct: 21 QDNDEIDLVELFRTLWKQKAKIALVTAATTLVAGIYAFTAEEVWTSKAVFDAPKLEEIGS 80 Query: 73 YNN---------------AMNVIYGQAAPKVS----------DLQETLIGRFSSAFSALA 107 Y A+ +I Q +V DL+ + S + L Sbjct: 81 YYEFTQQLRRTLQKPTIGAITLIPDQITKEVFTEFQKQTNSIDLRREFWSQ-SDYYHNLV 139 Query: 108 ETLDNQEEREK---------LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDK 158 + +++++EK +T+ P + + +VS A A+ L QY+ +++ K Sbjct: 140 INIKSEKDKEKKLDDLIEKNITVVPIDEQKVKFPSVSLSVNDATTAKELLIQYVDKLNAK 199 Query: 159 VNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTK---P 215 V + +LK + L++ + E A+ ++ I I++A A +A + + Sbjct: 200 VWKSKSTELKTILKEEVAELENEKKLLEFRAETDRNNSIDIIRKAKSVAEKANIKELNLS 259 Query: 216 QIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDI 275 +Q ++D LF LG++AL++ I + +P+ YY+ + L +++ L +DI Sbjct: 260 AMQGNANVSSRDMLFFLGTKALDAQIDNLVNKPVTMPVRYYEVERMLTELKKLPEFKVDI 319 Query: 276 HAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 +YRY+ P P+ RD PK+ + ++++ L G ++ +L + N Sbjct: 320 KSYRYLQAPSEPLTRDGPKRTLIIVVSFLFGMILSCIAILIKKVFLN 366 >UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 Tax=Cronobacter RepID=C9XZM2_CROTZ Length = 377 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 79/345 (22%), Positives = 152/345 (44%), Gaps = 39/345 (11%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 +H ++DL L+ L++ + I+ + I + + + +KWTS A+++ P+ Q+ Sbjct: 21 DHPRAELDLFALVAVLFKARKMILSITALFIVMGLALAFLLPQKWTSEAVVSIPETRQLI 80 Query: 72 GYNN---AMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETL------------DNQEER 116 + V+ AA + L+ + +F S AL E + Q + Sbjct: 81 ELQRVLVDLQVLDVDAAIDAASLENMFLKKFDS--RALQEKFLRTSPWVQAQVKEAQSDT 138 Query: 117 EKLTIEPSVKNQQL-----------------PLTVSYVGQTAEGAQMKLAQYIQQVDDKV 159 E L ++ Q++ T+S+ A+ AQ L +YI V Sbjct: 139 ESLERAVTLVAQRIKMTSNDNPKAPTASPYSSWTLSFTAPKAQDAQRVLKEYINYAALAV 198 Query: 160 NQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQ 219 +++ ++L+ I L K+ + L + + I+++ +LQ AN A + KP + Sbjct: 199 QRQVLENLRTTIELKVKSEESRLMIDRNTLANEHKIAIQRLNYSLQVANAAGIKKP-VYS 257 Query: 220 TGEDITQDTLF--LLGSEALESMIKHEATRPLVFSPN--YYQTRQNLLDIESLKVDDLDI 275 G+ + D + LG++ L + E + V + N L +++ L + D+D Sbjct: 258 NGQAVKDDPDYSIALGADGLAQKLAIERSITDVTALNAAIQNREYRLAELKKLNLADVDF 317 Query: 276 HAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 + Y M P LP++ D P KA+ LILA L+G ++ +VL R+ + Sbjct: 318 QPFHYQMAPSLPVKSDGPGKALVLILATLMGFIIACALVLVRDVI 362 >UniRef50_A5KZS4 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZS4_9GAMM Length = 358 Score = 210 bits (535), Expect = 4e-53, Method: Composition-based stats. Identities = 81/356 (22%), Positives = 144/356 (40%), Gaps = 50/356 (14%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAG 72 ++IDL +L LW GK+ II+ A +I + +A+E W+S+A IT+ +A Sbjct: 3 SANDEIDLRELFKALWDGKLIIILITAFFTASSIAFALLAQEWWSSSAKITKAQPQNLAA 62 Query: 73 YNN-------AMNVIYGQAAPKVSDLQETLIG------RFSSAFSALAET---LDNQEER 116 Y N+ VS ++L+ RF +AF++ LDN E Sbjct: 63 YQQQVRQFQPVFNIYQEDGTVLVSKELDSLVDSKVLFQRFINAFNSTNNKRSFLDNSAEF 122 Query: 117 EKLTIEPSVKNQQL----------------------------PLTVSYVGQTAEGAQMKL 148 ++ +V + + P T+++ T E + L Sbjct: 123 QEFKSSMAVGSSDMSVDEARAFRAEWFNRISAFTADNKGPNSPYTINFQTMTKESSFELL 182 Query: 149 AQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYAN 208 A YI + V+++ +L+ + R L R E A Q + + + A Q A Sbjct: 183 AAYILATELNVHEDAFNNLQAIVNGKRNELVQQKRILESQASNQLLVETARAKYAAQIAK 242 Query: 209 QAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHE--ATRPLVFSPNYYQTRQNLLDIE 266 A V +P +++ LG++ L++ +K V P + L + Sbjct: 243 SAGVDRPIQTGNEKELFSID---LGAKGLDAKVKALESVKNLSVIEPRLQEINAKLTMLN 299 Query: 267 SLKVD-DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 +L +D ++ +R++ PI RD PK+ + ++ +G + GAG VL R A R Sbjct: 300 NLDIDRTVEFQTFRFLENVEQPITRDKPKRVLIVLFGSFIGMLFGAGFVLIRFAFR 355 >UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4SZ47_YERIN Length = 372 Score = 209 bits (533), Expect = 9e-53, Method: Composition-based stats. Identities = 75/340 (22%), Positives = 151/340 (44%), Gaps = 36/340 (10%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQ------ 69 ++IDLI++ L+R K II+ V+V + + +KWTS+++I P + Sbjct: 25 DEIDLIEIFSMLFRAKKIIILIVVVFALIGLIVGFFLPQKWTSSSVIIAPTYSESMLLDN 84 Query: 70 ------IAGYNNAMNVIYGQAAPKVSDLQETLIGRF---SSAFSALAETLDNQEEREKLT 120 +AG ++ ++ Y A L F + L + N E +++ Sbjct: 85 LLGELKVAGVDSGIDENYLLATYMQFCDSRILRDAFLQQTDYLKMLMKKNPNDEFKKQSL 144 Query: 121 I----------------EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELE 164 + + + + + QT + A+ L Y+ V + N + Sbjct: 145 LDVISTNNITTESNANDKSASTKDNNYFRLKFSAQTPDSAKDLLQGYMNYVKESANAYIL 204 Query: 165 KDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDI 224 L+ ++AL + Q + Q ++D+RI++++ AL A A + KP + +G I Sbjct: 205 FKLQRSLALKLEAEQRLFSLESQRVQSRRDVRIKRLEYALSIAEAAGLKKP-VYSSGAAI 263 Query: 225 TQDTLF--LLGSEALESMIKHEA--TRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRY 280 D + LG +AL+ ++ E T PL S + N+ + ++K+D+++ ++Y Sbjct: 264 LDDPDYSITLGGDALKQKLRVEKSITDPLTTSADLRNRAINIDLLRNIKIDNIEFTPFKY 323 Query: 281 VMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 + KP +P ++D PK+ + L++ +G +V L R+ L Sbjct: 324 LQKPEVPTKKDGPKRLLILVIFTFIGLIVAIATALLRDGL 363 >UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C5S1B1_9PAST Length = 378 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 84/371 (22%), Positives = 154/371 (41%), Gaps = 56/371 (15%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD 66 + S N ++IDLI+L+ LW K+ IIIS ++ A+A Y AKE+WTS A + P Sbjct: 3 SQSKMNSANDEIDLIELVKTLWDKKIWIIISTVICTAIAGIYAFTAKEQWTSKAEVIAPK 62 Query: 67 VGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEE----------- 115 V + Y N Y + + D G F+ F+ L+E+LD + E Sbjct: 63 VTDLGSYFNVRKE-YARILGQEFDAGALANGLFAK-FNLLSESLDERNEFFVQSDVYKKL 120 Query: 116 -----------------REKLTI---EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQV 155 RE + I +P + + +S++ +T E AQ+ L ++I Sbjct: 121 IEGKDEKSQRSILSNLTRENIAITKPDPKKEPDLIGRRISFLAETPEDAQLTLEKFIAFT 180 Query: 156 DDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVT-- 213 Q ++ N+ +L E Q+ +++ + AL A +A + Sbjct: 181 SQSAYQLELENFLINLNEVLSDLTYEKTKFERDLSIQRSVQLENLHNALNIAKEAGIKDY 240 Query: 214 ------------------KPQIQQTGEDITQDT-LFLLGSEALESMIKHEATRPLVFSPN 254 + +I + ++ T LF+LG + L++ I + +++ P Sbjct: 241 AKAFGATNDTALQAIAMSETKIPLSDSKLSDGTYLFMLGEKYLQAQIDVLTQKGVIYPPR 300 Query: 255 YYQTR--QNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAG 312 YYQ L+ +KV + +A+ Y P P+ +D PK+ L+ + GG++ A Sbjct: 301 YYQVSELLKELEPLLVKVKEAKANAFSYQASPDYPVVKDKPKRLFILLGGAVAGGLLSAL 360 Query: 313 IVLGRNALRNY 323 +++ + Sbjct: 361 VLIMNYLFKQN 371 >UniRef50_A7JUL8 O-antigen chain length determining protein n=2 Tax=Pasteurellaceae RepID=A7JUL8_PASHA Length = 375 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 81/367 (22%), Positives = 148/367 (40%), Gaps = 52/367 (14%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 ++V ++IDLI++ LW K I+I+ + LA Y AKE+WTS A + P Sbjct: 3 DSVKSHEQSSDEIDLIEIFRALWDKKWWIVITTFITTLLAGIYAFTAKEQWTSKATVIAP 62 Query: 66 DVGQIAGY-----------------NNAMNVIYGQAAPKVSDLQETLIGRF--SSAFSAL 106 + ++ Y NA++ +++ Q+T F S+ + L Sbjct: 63 KLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRLAQSQDTKNEFFITSNVYKTL 122 Query: 107 AETLDNQEEREKLT---------IEPSVKNQ--QLPLTVSYVGQTAEGAQMKLAQYIQQV 155 AE D Q +R L+ I P K + T+S+ +T AQ L + +Q + Sbjct: 123 AEGKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGRTLSFSAETPMEAQDTLGKLVQFI 182 Query: 156 DDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTK- 214 + K +D + LQ + K +++ + +A + A +A + + Sbjct: 183 NSKAFAVELEDFLVDFQNVLTALQYEKSLIQEDLSVNKSVQLENLNKAYETAQKAGIKEY 242 Query: 215 ------------------PQIQQTGEDITQDT-LFLLGSEALESMIKHEATRPLVFSPNY 255 +I + + + LF+LG + L++ I + +V+ P Y Sbjct: 243 SKAFNQSDASNIAAALSDTKISLSDSKLADSSYLFMLGEKYLKAQIDVANEKGVVYPPRY 302 Query: 256 YQTRQNLLDIESL--KVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGI 313 YQ L +E L K + + Y P P+ +D PKK I L++ +G M+ Sbjct: 303 YQIDYQLKQLEPLFEKTKTVKTQTFSYQASPDYPVIKDKPKKVIILLIGAFIGLMISCLS 362 Query: 314 VLGRNAL 320 ++ + L Sbjct: 363 IILTHYL 369 >UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 Tax=Enterobacteriaceae RepID=Q3YTC2_SHISS Length = 346 Score = 206 bits (525), Expect = 7e-52, Method: Composition-based stats. Identities = 79/343 (23%), Positives = 139/343 (40%), Gaps = 31/343 (9%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 ++IDL +LL LW+ K I+ ++ LA Y AKE+WT+ I P + ++ Sbjct: 1 MPKAEDEIDLFELLGTLWKKKWVILCVTLLTTGLAAVYAFTAKEQWTAKTYIQAPRIAEL 60 Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRFSS-------------------AFSALAETLD 111 Y + Y + + D G FS + L Sbjct: 61 GSYLK-FHQAYARILNQPLDTNALANGLFSDLILIAESPDTKVKFLESTEYYKKETNNLS 119 Query: 112 NQEEREKLTIE----------PSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ 161 +++++ E P K + +A+ A L Y++ V+++ Sbjct: 120 TEQDKKIWLAEQANKGLVITPPKEKGNTSYYIIQASADSAQEAYKLLQGYLKNVNNQAVT 179 Query: 162 ELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTG 221 + N+ NL + + + +K +I IQ L A QA + + + G Sbjct: 180 LSLDEFGQNVNTLLVNLNKEIIDIDFQRKSEKLDQIAHIQRDLTTAEQAGIIDYRSSKGG 239 Query: 222 EDITQDTL-FLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRY 280 D Q + FLLG + L + +K P+++ YY+ ++ + ++E + D++ AYRY Sbjct: 240 FDNAQSSYKFLLGEKLLSAELKATKDAPIIYPFRYYEVKRQIDELEGMLRDNIQAQAYRY 299 Query: 281 VMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 MKP P+ +D P KA+ LIL L G M L L++ Sbjct: 300 QMKPSEPVIKDKPNKALILILGALPGAMFAIVGTLVYATLKDK 342 >UniRef50_D0Z7Z5 Chain length determinant protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0Z7Z5_EDWTE Length = 317 Score = 205 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 85/324 (26%), Positives = 164/324 (50%), Gaps = 19/324 (5%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 NH ++IDL+D++ QLW+GK+ + I+ +A+A Y+ + KWT+ + +++P + Sbjct: 4 KPVNHVNDEIDLLDIIRQLWQGKVIVFCVSIMFLAIAGLYIMLTTPKWTAESTLSKPYLN 63 Query: 69 QIAGYN------NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALA--ETLDNQEEREKLT 120 Q+A Y + G AP + D + + G + F A+A + L + ++ Sbjct: 64 QLANYPAGVMLSQVWTMNDGDNAPVIDDAK--ITGNVFNTFIAMANAQILSGMD----IS 117 Query: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD 180 I P + VS A+ L + + D ++L+ + ++ +L+ Sbjct: 118 IRPGTTAET--FIVSSTANDPALAKKNLQSALISLSDDARKQLDALMYSSLRERANSLKI 175 Query: 181 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESM 240 ++ QE A+ Q+D RI ++ ALQ ANQ + + ++ +I+ D LF+LG L +M Sbjct: 176 QMQAQENSARAQRDYRISVLKNALQLANQMNIQQTKLNPASGEISDDMLFMLGVPILNTM 235 Query: 241 IKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLI 300 I+HE PL F+ +Y+ ++ I K+ + ++ + + + + K+A+ L+ Sbjct: 236 IEHEKNLPLKFNASYFDMQEMFDSINGFKLTEDNLSIFN---ATNISVDKVGQKRALILV 292 Query: 301 LAVLLGGMVGAGIVLGRNALRNYN 324 L++LLG ++ G +L RNALR+ N Sbjct: 293 LSLLLGVILSCGYILLRNALRSAN 316 >UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C7A7_9GAMM Length = 351 Score = 205 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 157/347 (45%), Gaps = 36/347 (10%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 N ++IDL +L+ LW+GK+TI + IV AI Y A++ WTS A +T+ A Sbjct: 9 NSSNDEIDLAELVKTLWQGKVTIALCSIVFTVCAIVYALTAQQWWTSDATVTRGQYKDTA 68 Query: 72 GYNNAMNVIYGQA-APKVSDLQET--LIGRFSSAFSAL-----------------AETLD 111 + + +Y KV+++ E+ L+ F + F+A + Sbjct: 69 NIRSQVTNLYSVIDVSKVNNIFESGRLLNEFITEFNAFDNKKAFLEQNSIIEQYAKDDGV 128 Query: 112 NQEEREKL------TIEPSVKNQQLP---LTVSYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 N+E++ K I+ S+ +++ +S+ +++E A L Y + D+V E Sbjct: 129 NKEDKGKFIAFWAKKIDASLNDEKKRPNVYKLSFEARSSEAAHDLLKAYSSFITDQVRDE 188 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 + IA ++ L S + E+ A+E++ + + AL A A+V KP Sbjct: 189 AFSVIASKIAHNKQILLASKESLELKAKEKQKALLLKTNYALDIARSAKVNKPL---ADV 245 Query: 223 DITQDTLFLLGSEALESMIKHEA--TRPLVFSPNYYQTRQNLLDIESLKVDDLD-IHAYR 279 ++T LG+E L+ F P+ Q + L + + +D + + R Sbjct: 246 NLTGVFPIQLGTEGLKEQSNILKSMKDLSFFEPSLTQIKIKLGLLSKIYLDKDTAMKSVR 305 Query: 280 YVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 Y+ PI RD PK+++ +L LLG M+G IVL ++A N NAK Sbjct: 306 YLKDIDYPISRDKPKRSLIAVLGFLLGMMLGVAIVLLKSAF-NKNAK 351 >UniRef50_UPI000197C816 regulator of length of O-antigen component of lipopolysaccharide chains n=2 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C816 Length = 332 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 81/296 (27%), Positives = 152/296 (51%), Gaps = 2/296 (0%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 + + + ++IDL L QLW K TIII +IV I + YL AK KWTS A+I+ P++G Sbjct: 4 NKKERNQDEIDLFHLANQLWVNKKTIIIFIIVFIFMGCVYLVFAKPKWTSQALISLPEIG 63 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQ 128 Q++ Y A+++ +A + +L + + F A + D +++ + S Sbjct: 64 QLSNYPTAVSLSLN-SADNMGTYDMSLPTKVFNLFLANVDA-DIVKDKSNTPLSISKPKD 121 Query: 129 QLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVV 188 +S A+ AQ++L +++ ++ K L + + ++ + L ++ E Sbjct: 122 ANYYILSLSASNAKLAQLELTEWLNFLNKKTQSRLYQAIWQSLEQRKSQLLQQIKAFETS 181 Query: 189 AQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRP 248 A+++K R+ ++ AL+ A Q+ +I+Q I D LF++G+ AL ++I+ E P Sbjct: 182 AKDKKQQRLTLLESALKIAQDTQLNVNEIKQLPNIIPDDALFMMGAPALNALIQQEKEWP 241 Query: 249 LVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVL 304 L F P Y+ T+ L I S ++ + A + P L + R+SPK + L+L+++ Sbjct: 242 LTFDPRYFDTQVQLSLISSFQLKEQGFDAINIISPPSLALHRESPKVTLILVLSIM 297 >UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0GV84_VIBMI Length = 379 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 93/355 (26%), Positives = 154/355 (43%), Gaps = 50/355 (14%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAG 72 IDL +L LW+GK TII S+ + AI Y A+E W+S A +TQP + IAG Sbjct: 20 SGDNGIDLRELFSALWKGKWTIITSMFIFTFAAITYSLTAQEWWSSKATVTQPLLQDIAG 79 Query: 73 YNNAM--------------NVIYGQAAPKVSDLQETLIGRFSSAFSALA----------- 107 Y + +I +A + D E + RF F+A Sbjct: 80 YQKVVQRSQPLFDLHQQDGTIIVSEALDSLID-PEVIFKRFLQEFNANGTKRRFMQTNAT 138 Query: 108 --------------ETLDNQEER--EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQY 151 E+L + E+ E++ P K ++ T+S+ + + L+QY Sbjct: 139 FLALKKELLNQDNPESLQDFYEQWFERIKGVPVGKKEENIFTLSFQSVDKDSSLTLLSQY 198 Query: 152 IQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQ 211 +Q V+ +NQ+L DL + + ++ AQ + + + + Q AL A A Sbjct: 199 VQFVNQTINQQLNNDLFNTLVAKYGEIEQQENYLRQQAQLRLQVELERTQYALAIAEAAA 258 Query: 212 VTKPQIQQTGEDITQDTLFLLGSEALESMIKHEA--TRPLVFSPNY--YQTRQNLLDIES 267 +T+P ++I +GS AL++ + VF P Q++ + D+ Sbjct: 259 ITQPLQNLGEQEI---FAINIGSRALKAKVDALKSIKNLSVFDPQLAILQSKLSQFDLNE 315 Query: 268 LKVD-DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 L D I+ + Y+ +P + +D+PK+A+ +L L GGM+G IVLGR R Sbjct: 316 LSTDIKWSINGFYYLDQPEQALTQDNPKRALITVLGFLFGGMIGVVIVLGRFIFR 370 >UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropneumoniae RepID=B0BR52_ACTPJ Length = 370 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 89/359 (24%), Positives = 154/359 (42%), Gaps = 50/359 (13%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 N E+IDLI+L+ LW+ K+ I I + ALA Y AKEKWTS + P V I+ Sbjct: 9 NQTNEEIDLIELVRVLWKKKLLIAIVTCIFTALAAVYAFTAKEKWTSQTEVIAPRVTDIS 68 Query: 72 GYNNAMNVIYGQAAP--KVSDLQETLIGRFSSA----------------FSALAETLDNQ 113 Y + K ++++ L FS + LAET + Sbjct: 69 EYLSLRKEYNLIIGSEFKENEIRNELSELFSRYVLSYDEAIAFFKTTDTYKKLAETENEV 128 Query: 114 EEREKL---------TIEPSVKNQ--QLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 + + I+P K L ++ TA AQ L +I + D Sbjct: 129 GLQRAVAEFTTESLKVIKPDAKKDPNALGSKIAISFDTALSAQTTLNDFICHISDTSFNF 188 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTK-------- 214 + + I +L E Q+ ++I+ ++ AL A +A + + Sbjct: 189 SKNEFIYWIKESISSLNYEKEVIEQDQSIQRKVQIQNLETALDMAKKAGIKEYSSALSSN 248 Query: 215 ----------PQIQQTGEDITQDT-LFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLL 263 +I + + T LF+LG + L++ + T+ +V+SP YYQ ++ LL Sbjct: 249 SSVANLAVSDTKIPLSDSKLADGTYLFMLGEKNLQAQLDIAKTKEIVYSPRYYQIQEQLL 308 Query: 264 DIESL--KVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 + +L KV+ + ++ Y+ P LPI+RD PK+ I L++ ++GG++ + V+G+ Sbjct: 309 KLNTLLPKVEKVTGQSFSYISSPELPIKRDWPKRFILLLIGAVIGGVLSSLWVIGKQIF 367 >UniRef50_UPI000197BC0B ferric enterobactin transport protein FepE n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BC0B Length = 379 Score = 203 bits (516), Expect = 8e-51, Method: Composition-based stats. Identities = 75/350 (21%), Positives = 160/350 (45%), Gaps = 35/350 (10%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP---DV 67 Q ++IDL+ L L + K I+I +V I +++G + + +KW+STAI+ P ++ Sbjct: 29 QIQQNDEIDLMALFSILLKHKFLILIFTVVCIVVSVGVVKLLPQKWSSTAIVIPPASEEL 88 Query: 68 GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRF------------SSAFSALAETLDNQEE 115 ++ + ++V+ + + + ++ + + LAE +D +++ Sbjct: 89 KEVNAFKAQLDVLDIPIDLSAQRIFNSFVDQYRSKVNQESYIRSTDYYHNLAEKIDPKDD 148 Query: 116 ---REKLT------------IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVN 160 +++L + + + +S+ AQ L YI+ KV Sbjct: 149 VIAQQRLVNSIISNDIKIQDLSKEKNSTSNDIVLSFTAPLPTEAQDLLEGYIRYSASKVR 208 Query: 161 QELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQT 220 Q+L+ ++ + I+ +SL+ + Q + D+++ +++ A+ A A + KP I Sbjct: 209 QQLKVEIDNMISEKLIYASESLKREVSKIQTEYDVKVERLKRAVDIAKAAGIEKP-IASD 267 Query: 221 GEDITQDTLF--LLGSEALESMIKHEAT--RPLVFSPNYYQTRQNLLDIESLKVDDLDIH 276 I D + LG+EALE + E + S N + L +++ + +LD Sbjct: 268 SVAINDDPDYPIALGTEALEKKLLIETQNRDLALMSENLQNRKIYLDNLQEVTAKELDFT 327 Query: 277 AYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 ++++ P LP+ +DSPK ++ + L+ +LG ++ VL R R+Y + Sbjct: 328 PVKFILTPDLPLHKDSPKSSLIVALSAILGLILSCAFVLSRELYRDYKYQ 377 >UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VHQ6_VIBSL Length = 374 Score = 203 bits (515), Expect = 9e-51, Method: Composition-based stats. Identities = 88/355 (24%), Positives = 147/355 (41%), Gaps = 50/355 (14%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG----- 68 ++IDL + LW GK+ II+ + + AIG+ +A+E W+S A IT ++ Sbjct: 20 PNDEIDLREFFKALWDGKLIIILVTALFTSSAIGFALLAQEWWSSEAEITNNELQDRVMY 79 Query: 69 --QIAGYNNAMNVIYGQAAPKVSDLQETLIG------RFSSAFSAL---AETLDNQEERE 117 Q+ + ++ + + S+ + L+ RF F++ LD E + Sbjct: 80 EQQVKKFQPVFSIYQSDGSARSSEELDFLVDSQIIFQRFVDLFNSSNNKKAFLDESSEFQ 139 Query: 118 KLTIEP----------------------------SVKNQQLPLTVSYVGQTAEGAQMKLA 149 ++ + K+ P +++ T E + L+ Sbjct: 140 EIKDDSFSSASEVTEDTTRKLYTEWFERISASLRDKKDTSSPYILTFQATTKESSFDLLS 199 Query: 150 QYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQ 209 YI + +V + L+ + R L E A+ + + I + Q AL+ A Sbjct: 200 SYISFTELQVRNDAFDHLEALVFGERNELFQQKMVLESKARNRLLVEIERAQSALKIAKA 259 Query: 210 AQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEA--TRPLVFSPNYYQTRQNLLDIES 267 A V P + D LGS+AL+ IK V P Q L ++S Sbjct: 260 AGVETPLLSGNARDFYA---IELGSKALQEKIKILKSVKNLAVLEPRLQQITAQLDMLDS 316 Query: 268 LKVD-DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 +K+D +D HA+RY+ P RD PK+A+ ++L LLGGM+G IVL R A R Sbjct: 317 IKIDRTVDFHAFRYLSDVEQPTTRDKPKRALIVVLGTLLGGMLGVAIVLIRFAFR 371 >UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycetemcomitans RepID=Q9JRS3_AGGAC Length = 369 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 81/365 (22%), Positives = 151/365 (41%), Gaps = 57/365 (15%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 + ++IDL++L+ LW ++ II+ + +A Y+ AKE+WTS A I P + ++ Y Sbjct: 7 ENDEIDLVELIKVLWNKRLWIILFSLFFTTIAGIYVFTAKEQWTSKAEIIAPRITELGDY 66 Query: 74 NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDN-----------------QEER 116 + Y + D T F F+ L+E+LD + ER Sbjct: 67 F-LVKKEYARILGSEFDASMTANNLFG-QFNLLSESLDERKKFFEKSDFYKKESEGKSER 124 Query: 117 EKLTIEPSVKNQQLPLT--------------VSYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 EKL I + + + + +S+ +T AQ L+++I V+ Q Sbjct: 125 EKLQILFDLMTKNIAIKKPDTKKYPDLIGNQISFYAETPIEAQNVLSKFISTVNISAYQI 184 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKP------- 215 + +L E + K ++++ ++ AL A +A + + Sbjct: 185 ELDKFLTDFNEIIADLNYEKIKFERDLRIHKSVQLKNLESALNIAKEAGIKEYSKSFSIA 244 Query: 216 --------------QIQQTGEDITQDT-LFLLGSEALESMIKHEATRPLVFSPNYYQTRQ 260 ++ + ++ T LF+LG L++ I +++ P YYQ Sbjct: 245 DPQLVLQAIAVSEAKVPLSDSKLSDSTYLFMLGETYLKAQIDVLKNNNIIYPPRYYQVSS 304 Query: 261 NLLDIESL--KVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 L ++E L K + +A+ Y P P+ RD PKK + L + +LG ++G+ +L R Sbjct: 305 QLSELEPLLIKAKQVKANAFSYQASPDYPVVRDKPKKLLILSIGFILGLILGSIYILFRK 364 Query: 319 ALRNY 323 + N Sbjct: 365 LVSNK 369 >UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 Tax=Edwardsiella RepID=C5BCN1_EDWI9 Length = 357 Score = 201 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 75/342 (21%), Positives = 151/342 (44%), Gaps = 37/342 (10%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 ++IDL+ LL+ L++ K I+ +V+V + +KWTS A + ++A Sbjct: 11 QQDEIDLLSLLLVLFKAKWVILGAVLVCALAGFAVKTLLPQKWTSYAELIPAQARELAAM 70 Query: 74 NNAMNVIYGQAAPKVSDLQETLIGRF----------------SSAFSALAETLDNQEERE 117 N+ +N + KV+ LI RF + + LA L + RE Sbjct: 71 NSELNQL-ALLDIKVNASPGWLIERFVQTYESQIVRREYIAQTDYYKTLAAALSDPLARE 129 Query: 118 KLTIE-----PSVKNQQL----------PLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 +L ++KN QL + ++++ A L YI V +V + Sbjct: 130 RLLSSLAQKAFTLKNSQLDQATESKEYTYYRLGVSARSSQEAHALLQGYIDFVAARVVDD 189 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 L ++K+ + + + + + ++IR++ +L A A ++KP + G Sbjct: 190 LRYNIKNQLDQTLAREKARYQLTLQNLRNDQQVKIRRLDYSLAVAQAAGISKP-LYGNGA 248 Query: 223 DITQDTLF--LLGSEALESMIKHEATRPLVFSPN--YYQTRQNLLDIESLKVDDLDIHAY 278 D F LG+ L + E ++ + N ++Q + + + + DL I + Sbjct: 249 TFKDDDDFPISLGTNGLRQKLDIEKSQTDLTELNAGLKNSQQYIGRLSQVHLSDLKIQPF 308 Query: 279 RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 +Y+M P +P+++++PK A+ ++L+ + G ++ G VL R+A+ Sbjct: 309 KYLMLPSIPVQKEAPKGALIVLLSAMAGLLLSCGAVLMRHAI 350 >UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aeromonas hydrophila RepID=Q8KNM2_AERHY Length = 362 Score = 199 bits (507), Expect = 8e-50, Method: Composition-based stats. Identities = 78/342 (22%), Positives = 137/342 (40%), Gaps = 33/342 (9%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 Q +IDL +L LWR K+ I++ +V IGY +A + W S + I P + ++ Sbjct: 20 QATSGNEIDLYELFSVLWRQKIQILMITVVFAIAGIGYALLAPQVWVSQSQIKPPSLQEV 79 Query: 71 AGYNNAMN-VIYGQAAPKVSDL--QETLIGRFSSAFSALAETLDNQEEREKLTIEPS--- 124 +N +I Q + D + L G F S F++ E+ L ++ Sbjct: 80 ESLELRVNQLINAQIPATIFDSFNKAALYGDFVSNFNSFNNKRQFLIEKGYLDMDAEAAG 139 Query: 125 ----------------------VKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 + +T+S+ TA AQ +L QYI + + Sbjct: 140 ITDDKGKRALLRKMVNGISAVALDAPSDNITLSFGAATATEAQQRLEQYIAFIQQQEIVS 199 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 K+L+ K L + + Q + + + +L+ + A + P Sbjct: 200 KSKELETIWQNRIKILLSQYDSIKADTLTQLKDDVSRTEYSLRISRAAGIETPVENLN-- 257 Query: 223 DITQDTLFLLGSEALESMIKHEATRPLVFS--PNYYQTRQNLLDIESLKVDDLDIHAYRY 280 + G++AL +K + P R L + ++K++ ++ Y Sbjct: 258 -VRDGFNIEWGAKALAEKLKVLKELKNLELLNPALSDLRLQLSSLRAIKLEQQSFQSFSY 316 Query: 281 VMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 + P P+ RD PK+ + ++LA LLGGM+G GIVL R+A R Sbjct: 317 LASPSEPLSRDKPKRPLVVVLATLLGGMLGIGIVLARHAFRR 358 >UniRef50_Q8KN75 Wzz n=1 Tax=Pseudomonas aeruginosa RepID=Q8KN75_PSEAE Length = 344 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 67/327 (20%), Positives = 136/327 (41%), Gaps = 29/327 (8%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN-- 74 QIDL++L + R K I ++A ALA+ Y ++ + + A + P + +I+G+N Sbjct: 15 QIDLVELAQGILRQKWLIASFFLLATALAVVYAFYSRPIYEARASVLPPSLNEISGFNLG 74 Query: 75 -----------NAMNVIYGQAAPKVSDLQETLIGRFSSAFS-ALAETLDNQEER--EKLT 120 + ++ + Q ++ AE+LD + ++L Sbjct: 75 RKESDLGVFSVKDIYDVFIRNLMAEETRQNFFKEKYLPTLGDKGAESLDALYNKFNDELQ 134 Query: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD 180 I+ SV +S V ++ A + YI+ V E+ K++K ++ + NL+ Sbjct: 135 IKASVDGSG-RYLISAVAHESDTAAYLVDSYIEMVAGISKNEMLKNIKRDLHVKSVNLEQ 193 Query: 181 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI------QQTGEDITQDTLFLLGS 234 + +A+ +++ I +++EAL+ A ++ P +Q + + +++ G+ Sbjct: 194 QINIMRAMAKTRREDTILRLREALKIAEALKIENPPSFEGQTERQLSSIMIGELMYMRGA 253 Query: 235 EALESMI----KHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRR 290 +AL + I E+ + Q R L L D+ + YR + Sbjct: 254 KALRAEISSLEARESDDSFIGGLRALQERYALYT--KLSPDESQVSVYRKDGVVETSDKP 311 Query: 291 DSPKKAITLILAVLLGGMVGAGIVLGR 317 PKK I ++L + G +G + L R Sbjct: 312 IKPKKLIIIVLGAVFGIFLGCLVGLLR 338 >UniRef50_C9P0E2 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9P0E2_9VIBR Length = 383 Score = 199 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 93/360 (25%), Positives = 149/360 (41%), Gaps = 56/360 (15%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 ++IDL +LL LW GK+ III+ +V A+ + ++E W+S A +T+ IA Y Sbjct: 26 DEIDLRELLEALWNGKLIIIITTLVFAVGAVVFALNSQEWWSSKAKVTKAQPQDIAAYQQ 85 Query: 76 AM--------------NVIYGQAAPKVSDLQETLIGRFSSAFSAL---AETLDNQEER-- 116 + V+ + + D E L RF AF++ + LD+ E Sbjct: 86 QVKQFQPVFDIYQDDGTVLVSEELDNLVD-TEVLFKRFVDAFNSSNNKRDFLDSSSEFRA 144 Query: 117 ------------------------------EKLTIEPSVKNQQLPLTVSYVGQTAEGAQM 146 +K+T++ +Q P +S T E + Sbjct: 145 FKAKLETETETETETEAEAEVTRQLYAAWFQKITVKQDGIGKQSPYDISLQSTTKESSYS 204 Query: 147 KLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQY 206 L +YI + K +Q +L+ + R L R E A + + I + + A+ Sbjct: 205 LLNEYIGIIKRKAHQNALNNLQAVVDGKRNELIQQKRILESQAVNKLVVEIERAKFAMDI 264 Query: 207 ANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKH--EATRPLVFSPNYYQTRQNLLD 264 A A VT+P + +I LG++ALE+ +K V P Q L Sbjct: 265 AKAAGVTQPIRTNSSNEIFGID---LGTKALEAKVKALELVKNLSVVEPRLQQINAKLDM 321 Query: 265 IESLKVD-DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 +E LK+D + +R++ PI RD PK+ + +IL LLGG +G IVL R A R Sbjct: 322 LEYLKIDRSIRFQTFRFLESVDKPISRDKPKRTLIVILGTLLGGTLGVAIVLIRFAFRRE 381 >UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae RepID=A6ADU0_VIBCH Length = 377 Score = 193 bits (490), Expect = 8e-48, Method: Composition-based stats. Identities = 83/358 (23%), Positives = 147/358 (41%), Gaps = 50/358 (13%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN 74 ++IDL +L + LW+GK II+ +V I Y +E W++ A ++QP + IA Y Sbjct: 23 NDEIDLKELFLALWQGKWLIILCTLVFTVATITYALTVQEWWSAKAKVSQPQLQDIASYQ 82 Query: 75 NAM--------------NVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEE----- 115 A+ +I + + D E + RF F+A L E Sbjct: 83 QAVKRYQPLFDVYQEDGTIIISETLDSLIDA-EVIFKRFLQEFNANGTKLRFMETNTTFL 141 Query: 116 ----------------------REKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQ 153 E++ + + T+S+ + L +Y+Q Sbjct: 142 ELRKDLLNKDDPQRLQAFYEQWFERIKGVSIGEKEDGAFTLSFQSVDKISSLALLREYVQ 201 Query: 154 QVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVT 213 V+ +NQ+L+ DL + L+ + Q + + + + Q AL A A + Sbjct: 202 FVNQIINQQLKDDLNSILVAKYGELRQQETNLQQQTQLRLQVELERTQYALNIAEAADIK 261 Query: 214 KPQIQQTGEDITQDTLFLLGSEALESMIKHEA--TRPLVFSPNY--YQTRQNLLDIESLK 269 +P ++I +GS AL++ + VF P QT+ + +E+L Sbjct: 262 QPVQNLGEQEI---FAINIGSRALKAKVDALKSIKDLSVFEPRLAILQTKLSQFGLETLS 318 Query: 270 V-DDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 I+++ Y+ + P+ RD PK+A+ ++L LGGM+G IVL R A R+ + Sbjct: 319 AGTKWSINSFYYLEQAKQPLSRDKPKRALIVVLGGFLGGMLGVAIVLVRFAFRSEEKR 376 >UniRef50_Q02PW5 O-antigen chain length regulator n=19 Tax=Pseudomonas aeruginosa RepID=Q02PW5_PSEAB Length = 360 Score = 189 bits (481), Expect = 9e-47, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 122/311 (39%), Gaps = 24/311 (7%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 S Q +ID I+L+ LW K + + LA Y ++K + + + P + Sbjct: 7 SRQTSKRNEIDFIELIQGLWSQKWLVFSLTFLGAVLAGSYAFLSKPVYEARVALLPPSLS 66 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSS-----------AFSALAE---TLDN-- 112 +AG+N A G VS + S +L E ++D Sbjct: 67 DVAGFNIARGRDSGLPPFTVSQVYSVFTRNLQSEGTRRQFFREVYLPSLEERKGSIDGLY 126 Query: 113 QEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIA 172 + + +++ K+ TV Q E A QY + E+ + + + Sbjct: 127 RAFSDDVSVNRPSKDLPERYTVILNRQDPEQAAKWAKQYADLAALRSMDEMRGNAQRELE 186 Query: 173 LGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI------QQTGEDITQ 226 + +N+ + T V +E+++ RI +++EALQ A V KP + QQ + Sbjct: 187 VKSRNILQQIDTLRQVVKERRNDRIVRLKEALQVARAVGVEKPPLIGAQIDQQLSAIMEG 246 Query: 227 DTLFLLGSEALESMIKHEATR--PLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKP 284 +++ G++ALE+ IK R F P ++ L ES +++ + +R Sbjct: 247 SLMYMRGTKALEAEIKALEKRTSDDPFIPALPGLQEQLALYESKQLNFDRVAVFRQDGGV 306 Query: 285 MLPIRRDSPKK 295 +P PKK Sbjct: 307 EIPDDPIKPKK 317 >UniRef50_Q8KNB4 Wzz n=2 Tax=Pseudomonas aeruginosa RepID=Q8KNB4_PSEAE Length = 345 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 65/326 (19%), Positives = 137/326 (42%), Gaps = 26/326 (7%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN-- 74 ++DL+ L+ +LW K+ I+++ ++A+ + Y ++K + + P +G I G+N Sbjct: 6 EVDLVKLVKELWVNKVLILLTTLLALIGSFTYAYLSKPVYEYRVAVVPPALGSIEGFNIG 65 Query: 75 -----------NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREK----- 118 ++ I+ + + +E + AE+ D QEE K Sbjct: 66 RRENGLDAYTVRSIYAIFSRNLLSDENKKEFFYKIYLPQVGEGAESEDEQEEFYKKFSKE 125 Query: 119 LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNL 178 + I+P+ K TV G E +++ D+ E+ + + + Sbjct: 126 VKIDPANKPDADRYTVIVEGTKREVLATWAQAFVRLAADRAVHEVIDSAGRDFQVRNAAM 185 Query: 179 QDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI------QQTGEDITQDTLFLL 232 Q + + +A+ ++D RI +++EAL A ++ P + QQ + D +++ Sbjct: 186 QSRITVLQNMAKGRRDDRIARLKEALLIAESLKIDGPPLIEGASEQQLSSIMDGDLMYMR 245 Query: 233 GSEALESMIKHEATRPL--VFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRR 290 G++AL + I + +R + F P ++ L SL VD + Y+ + Sbjct: 246 GAKALRAEINNLESRSVDAPFIPELRTLQEKLSWNSSLSVDSDAVAVYKEDEGLSFSNQP 305 Query: 291 DSPKKAITLILAVLLGGMVGAGIVLG 316 PKK + + + L G ++G + + Sbjct: 306 IKPKKILIVTIGTLAGLIIGILLAVL 331 >UniRef50_Q31F07 Lipopolysaccharide biosynthesis protein Wzz n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31F07_THICR Length = 364 Score = 188 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 65/351 (18%), Positives = 135/351 (38%), Gaps = 34/351 (9%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV 67 + ++IDL +L L + K+T+ +S ++ I L Y + S A + P Sbjct: 10 FEEKASMDDEIDLFELWNGLVQEKLTVFLSFLMIIGLGTIYAFSVTPVYKSDAYLLPPKA 69 Query: 68 GQIAGYNNAMNVIYGQAAPKVSDLQETLIGR---------FSSAFSALAETLDNQEEREK 118 +I N + A V+D+ T F + +A + + +EK Sbjct: 70 SEIQDINRLNATLGIGDAYSVNDVFNTYTENLLSRARLLTFFKQHNLIAFYEPDFKNKEK 129 Query: 119 LTIEPSVKNQQLPLTVSYVGQTAEGAQMK-----------------LAQYIQQVDDKVNQ 161 E + + + + L QYIQ++ + + Sbjct: 130 EVREKEFNDSFSTFVEEFGITHPKDGAKRVMVEMTLPVDADQVKEFLTQYIQKIRIETRK 189 Query: 162 ELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTG 221 ++ D+ + L + + + AQ+ ++ +I ++ E+++ A Q ++ +P Sbjct: 190 QITTDIFTRKQFLMQQLINQINAVKETAQKHREDKIARLDESIKVARQLKIKEPLSAGPA 249 Query: 222 EDI-----TQDTLFLLGSEALESMIKHEATR--PLVFSPNYYQTRQNLLDIESLKVDDLD 274 +I L+ LG + LE+ R F+ + + ++S++++ Sbjct: 250 MNIQGVQNQGLPLYYLGYQVLEAEKDVLKKRKTDDAFTGKLRELEERYNLLDSVEINGDL 309 Query: 275 IHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 V +P + PKKA+ L ++ +LG M+G I L R A++N A Sbjct: 310 FKVVN-VDQPPEIGEKVKPKKALILAVSGVLGLMLGIFIALIRRAIKNRKA 359 >UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n=1 Tax=Pseudomonas entomophila L48 RepID=Q1ID96_PSEE4 Length = 346 Score = 186 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 69/300 (23%), Positives = 126/300 (42%), Gaps = 22/300 (7%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNA 76 +ID I+LLV L++ + ++ + AL + Y+ ++ + P IA N Sbjct: 13 EIDFIELLVVLFKEWLLVVKVASLVFALGLVYVFYVPSRYEAKLFTIPPTQNDIAQLNYG 72 Query: 77 MNVIYGQAAPKVSDLQETLIGRFSS-----------AFSALAE----TLDNQEERE---K 118 V D+ + + +S F +LAE +L + R+ Sbjct: 73 RGGSAELPLISVGDVYSSYVRNLNSESMRMEFFNDVYFPSLAEKQKTSLRSDLYRQFFAA 132 Query: 119 LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNL 178 L+I K+Q ++ + E A + QY Q D+ +E+ K++ + + NL Sbjct: 133 LSILQGGKDQSDRYLITASSSSPEEAAKWVKQYTQMAGDRAKREVLKNIYSDALVKADNL 192 Query: 179 QDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI--QQTGEDITQDTLFLLGSEA 236 + +R ++ A+ ++D RI ++ EAL A + KP I + + ++ GS+A Sbjct: 193 EKQIRREQESARRERDDRIARLTEALVIARSVGLVKPPIISAELTAQMNGSLTYMRGSDA 252 Query: 237 LESMIKHEATR--PLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPK 294 LE+ I + R F N Q + SL++D I Y+ ++P R SPK Sbjct: 253 LEAEIANLKKRSSDDPFISNLRQREAEVSFYRSLRIDPALIEVYQQDGDLIVPDRPVSPK 312 >UniRef50_UPI0001C34705 lipopolysaccharide biosynthesis protein n=3 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C34705 Length = 318 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 76/301 (25%), Positives = 141/301 (46%), Gaps = 20/301 (6%) Query: 27 LWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNV-IYGQAA 85 LW K TI I ++ + YLA+AK +WTS I+ P++GQ++ Y A+++ + Q Sbjct: 19 LWVHKNTIFIITAFSMMIGCFYLALAKPQWTSVVFISSPELGQLSNYPEAVDLSLREQTW 78 Query: 86 PKVSDLQETLIGRFSSAFSALAETLDNQEEREK-----LTIEPSVKNQQLPLTVSYVGQT 140 +DL + F+ +D EREK +P V N ++ +++ Sbjct: 79 ADKADL-------STKVFNLFLANIDAYIEREKPNSPVAIFKPEVGNYRV---LTFSSTN 128 Query: 141 AEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQI 200 A+ AQ +L + + ++ + Q L + + ++ L + +LQ L E +EQ+ L I Sbjct: 129 AKLAQSELTELVAFLNQQTQQNLYQSIHQSLELRKHSLQRRLNALEASTKEQEQLHIALW 188 Query: 201 QEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQ 260 + A ++ +I+Q E+I+ + L ++ ++ + L F +Y++T+ Sbjct: 189 ER----AKNQRLKGGEIKQLPENISDEPLLMMEVAVFTALFELLQDTRLPFDADYFETKT 244 Query: 261 NLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 L + S K+ + A + P L RDSP+ L L++L G +VG V R + Sbjct: 245 ALSLLSSFKLSESRFQAVNIISPPSLAKHRDSPRVPFVLGLSLLFGIVVGVTYVFIRQSW 304 Query: 321 R 321 R Sbjct: 305 R 305 >UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJF5_9GAMM Length = 353 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 67/346 (19%), Positives = 142/346 (41%), Gaps = 31/346 (8%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 S ++ + IDL L +QLWR K+ I+ + Y ++ + S+A++ P Sbjct: 6 SPEHPLNDHIDLFFLFLQLWRSKLLILGITALITLCGAAYSFLSTPIYQSSAVLASPSES 65 Query: 69 QIAGYNNAMN----VIYGQAAPKVSDLQETL--------IGRFSSAFSALAETLDN--QE 114 + +IY + A + + + R+ ++F + E LD+ + Sbjct: 66 DLIEIRKIHTLLQQIIYSETASEEASTTDIFGQFISALNSNRYKNSFLSKPELLDHFRND 125 Query: 115 EREKLTIEPSVK----------NQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELE 164 +L + +T+S ++ E + L +YI + ++EL Sbjct: 126 NTTQLQARKEFNRALKVTLPDTEEINHITISLRTKSPELSSSWLNEYISFAHQQFSKELT 185 Query: 165 KDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQT--GE 222 +L+ I + NL ++++++ I+ I+EAL AN+ + P +T G+ Sbjct: 186 NNLQARIHAAQNNLLLTIQSKKANYHSNLIEEIKSIEEALIIANEIGLVNPLKTETNFGK 245 Query: 223 DITQDTL---FLLGSEALESMIKHEA--TRPLVFSPNYYQTRQNLLDIESLKVDDLDIHA 277 D + + LGS++L + + + L P + L + ++ +D I A Sbjct: 246 QHIIDQMRGIYRLGSKSLNAELNALKAREKNLDNIPGLSDEKLKLELLANIDLDSKLISA 305 Query: 278 YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 + + P+K I ++L+++ G ++G VL N +R+ Sbjct: 306 MILDLAAEPAPKPIEPRKTIIILLSIVAGLLIGIMTVLAGNLVRHR 351 >UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZRK1_PHOAS Length = 347 Score = 179 bits (455), Expect = 8e-44, Method: Composition-based stats. Identities = 70/341 (20%), Positives = 152/341 (44%), Gaps = 33/341 (9%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M++ NN ++ ++ ++ W+ K I+I+ ++ + Y A+ WTSTA Sbjct: 1 MKMSINNSMDESSQISGYTTLEWVLCFWQKKFLIVITTLIFAVAGVSYAYYAQSWWTSTA 60 Query: 61 IITQPDVGQIAGYNNAMNVIY-----GQAAPKVSDLQETLIGRFSSAFSALAETLD---- 111 +IT I ++ ++ +Y G + D ++ L+ F + F+A L+ Sbjct: 61 VITTNKARDIRIFSENIDNLYVNSGVGGLVSQALD-EKRLLRTFVNYFNAYNNKLEFLEG 119 Query: 112 ---------NQEER--------EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQ 154 N++E+ +++ E + Q+ ++SY ++ + L++YI Sbjct: 120 NKSIKSDFINEKEKHDFLQRFIKRINSEKVGNDSQVLYSLSYTATSSIKSHDLLSEYINF 179 Query: 155 VDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTK 214 +++KVN+E+ LK +I K L +S + ++ A+ ++ I + AL+ A A + K Sbjct: 180 INEKVNKEVVSSLKSDINNQMKRLTESTVSLKINAEVKQHAEILKTDYALKIAEAADLKK 239 Query: 215 PQIQQTGEDITQDTLFLLGSEALESM--IKHEATRPLVFSPNYYQTRQNLLDIESLKVDD 272 P + I +G++ L+ I H + +F P + + ++ + ++ Sbjct: 240 PIAELGNSQI---FNIEIGTDGLKEKSLILHNSKDLALFEPQIDIAQAQINFLKDINLEK 296 Query: 273 LD-IHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAG 312 +AYR+V P+ + P K I ++ +++ G VG Sbjct: 297 AKPFNAYRFVKDVSYPMSQAYPSKLIIILFSIIFGFSVGCF 337 >UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VMI6_ACTSZ Length = 346 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 87/361 (24%), Positives = 142/361 (39%), Gaps = 54/361 (14%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M N+ Q +IDLIDL+ LW+ K+T+I+S + +A Y A EKWTSTA Sbjct: 1 MTFSNHPSIPQQS--NEIDLIDLIKVLWKKKLTVILSAFLFAIIAAIYAFTATEKWTSTA 58 Query: 61 IITQPDVGQIAGYNNA---MNVIYGQAAPKVSDLQETLIGRF----------------SS 101 + P + Y NA I V + ++L +F S Sbjct: 59 EVIAPTGVDMGAYGNAKLRFAQIAKLPDITVDTVSKSLYAKFDRLAFSQNERRNFFSQSD 118 Query: 102 AFSALAETLDNQEEREKLTI-----------EPSVKNQQLPLTVSYVGQTAEGAQMKLAQ 150 + L + D + +R+ L+ +P +S+ QT E AQ LAQ Sbjct: 119 EYKGLIQDQDEKAQRKILSALTTEYTAVVRPDPKKNADMFGNKISFSAQTPENAQKTLAQ 178 Query: 151 YIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQA 210 ++ +++K + + + + IA NL + + E QK+ + Sbjct: 179 FVDFINEKAFELDKNEFQMKIAQQIDNLTNEKKEIEESLVVQKEQNTENAKPLNAIPQSL 238 Query: 211 QVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLL--DIESL 268 PQ + L + AL LV+ +Y + + ++ I L Sbjct: 239 ----PQTNLNSASQSSQDSALDPAMAL-----------LVYGDDYSRMQLRIITGQINQL 283 Query: 269 K-----VDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 K V L Y Y P P++RD PK+ I L++ +LGG++G V+G+ L Sbjct: 284 KALQNAVKGLTAQTYTYQASPSYPVQRDWPKRVILLLVGAVLGGILGCVWVIGKQILGGN 343 Query: 324 N 324 N Sbjct: 344 N 344 >UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z8B9_PHOPR Length = 349 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 64/344 (18%), Positives = 139/344 (40%), Gaps = 32/344 (9%) Query: 10 GQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQ 69 + +I + + L K +I+ ++ +A Y ++E W+S+ IIT+ + Sbjct: 6 PNGNGNSEIGINFFMQCLQNSKWLLILCSLLTGIVASIYAFNSQEWWSSSEIITEANYND 65 Query: 70 IAGYNNAMNVIYGQAAPKV--------SDLQETLIGRFSSAFSALAETLDN--------- 112 ++ N ++ ++ AA + + I ++ + L N Sbjct: 66 LSSLRNDVSPLFIVAAKTEKLEKIFSPNKIFIDFINEYNKPLTKSEFILSNDLLKIKMSN 125 Query: 113 ---QEEREK------LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQEL 163 +EE++K + + K Q + + +AE +Q+ L+QY + V ++V + Sbjct: 126 QKLEEEQQKNAFVKFWSNKIKYKKQGDNFKLIFESNSAEESQLLLSQYSKFVHERVKNNI 185 Query: 164 EKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGED 223 D+K I L+ + L + + AL + + P G++ Sbjct: 186 IDDVKSRIVSLVSLLEVKNDVLNEAVKANIKLEVEITKLALSVTKASNFSNPIENVNGDN 245 Query: 224 ITQDTLFLLGSEALESMIKHEA--TRPLVFSPNYYQTRQNLLDIESLKVD-DLDIHAYRY 280 LGS+AL K + +F P ++ + + + + V+ +++ + Y Sbjct: 246 F---LPIELGSKALSEKYKVLSAVDDFSIFDPEIHRIKSEIKMLNDIDVNYEMEFNVIGY 302 Query: 281 VMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 V LP+ D PK+++ +I+ + +G +G I + R + R YN Sbjct: 303 VNVAELPLNSDKPKRSLIVIIGLFIGLFLGCVISVYRESSRYYN 346 >UniRef50_A4C8G6 OtnB protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C8G6_9GAMM Length = 308 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 72/322 (22%), Positives = 136/322 (42%), Gaps = 27/322 (8%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 S N ++I+L L+ LW+GK+ I+ VI+ A ++ Y + ST ++T D Sbjct: 3 SVANKLNDEIELTQLISALWQGKILIVGLVILCSACSVFYALSLPNIYKSTVLLTAADES 62 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFS------SAFSALAETLDNQEEREKLTIE 122 Q +G + + G AA L + + + + + + +AE +D + + Sbjct: 63 QNSGMSKLNSQFGGLAAMAGVKLGSSGVDKSALALEIIKSHAFIAEFIDKNNLKPLIMAA 122 Query: 123 PSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQEL-EKDLKDNIALG--RKNLQ 179 + ++ AE I ++ + +QE+ EK +K+++++ +K+ Sbjct: 123 DNWDLGTNKVSYKPSVYNAESKVWVREAKIPRLPEPSSQEVHEKFIKEHLSINSDKKSNL 182 Query: 180 DSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALES 239 S+ V KD I + L A A++ K I + + I T LG A+ Sbjct: 183 VSISIFHVSPYVAKD-----IADKLVVAINAKIKKDDIDEANKSIAYLTS-ALGQTAVAD 236 Query: 240 MIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITL 299 M K +F Q Q + + D + ++ + ++ +DSPK+AI Sbjct: 237 MQK-------IFYELIEQQEQT-----KMLANARDQYVFKVIDPAVVAELKDSPKRAIIC 284 Query: 300 ILAVLLGGMVGAGIVLGRNALR 321 I +LG ++G G VL R L+ Sbjct: 285 IFGSVLGFLLGCGFVLIRYFLK 306 >UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersinia RepID=A1JMR4_YERE8 Length = 363 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 60/338 (17%), Positives = 132/338 (39%), Gaps = 30/338 (8%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT---QPDVG 68 + E++DLI+++ ++R I I + + + G + + ++WTS AI++ + Sbjct: 22 PSNKEEVDLIEIISIIFRSSKLIFIVLAIFTLVGGGVVFFSPKEWTSYAIVSVTSDGKMQ 81 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEP----- 123 + ++++V+ DL +SS + L +EK+ Sbjct: 82 PLESIESSLSVLNIDLNITADDLLMDFRKYYSS-----KDMLSKYMSKEKVNANNFAGLK 136 Query: 124 -----SVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNL 178 S + + ++Y G + Y+ ++ KVN L +K I +K Sbjct: 137 GKNINSDSDVKGNYILTYSSNLEYGLKDVFTGYVNYINRKVNDNLNDQIKFTIDTAKKMA 196 Query: 179 QDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI-QQTGEDITQDTLFLLGSEAL 237 + + + +RI++++ A A A + KP I + + +G + L Sbjct: 197 TEEYNLALQQVENEHKIRIQRLEYAASIAKAAGLQKPAIGAFDISASSNNYPISMGYDLL 256 Query: 238 ESMIKHEATRPLVFS--PNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSP-- 293 ++ E + + S + + L I +L+ +D+ + Y+ +P P++ P Sbjct: 257 NRQLEIERSITDLTSVNADLLNKKLYLNKITALQPVVIDVPTFNYLQEPSDPLQHSVPSE 316 Query: 294 -------KKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 K +T+I +G + VL R +R + Sbjct: 317 PILQNSRKGLLTIISFSFIGLIGSITFVLMRFFVRERH 354 >UniRef50_A1SRR6 Chain length determinant protein-like protein n=2 Tax=Psychromonas RepID=A1SRR6_PSYIN Length = 347 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 73/339 (21%), Positives = 128/339 (37%), Gaps = 60/339 (17%) Query: 40 VAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYG----------------- 82 V IA ++ Y A+E W + + P V +A N + Sbjct: 5 VGIAGSVYYALNAQEWWVAKGKVIAPQVNDVAALYAQSNKVSAILNSNDLLNSNSNNNGQ 64 Query: 83 ---QAAPKVSDLQE--TLIGRFSSAFSAL------------------------AETLDNQ 113 Q + ++ DL E TL F +AF++ Q Sbjct: 65 DTKQVSKELVDLFEPSTLFRNFINAFNSTINKKHFLETNPAFLAYLQVKQITVPSKGSAQ 124 Query: 114 EEREKL---------TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELE 164 E R++ I S+ +Q L +S+ T E + L +YI + + V + Sbjct: 125 ESRQQYLIVLNNWMNKINASLNSQTSELALSFRSATKESSAELLNEYILFIGENVRENQL 184 Query: 165 KDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDI 224 + I + LQ SL+ E A+ + + +++ + A Q A+ + + + Q E Sbjct: 185 EKFLLFIDSAKNELQVSLQMTEQKARRELAVLLQKTEYAYQIASHSGLVEYQANLNKE-- 242 Query: 225 TQDTLFLLGSEALESMIKHEAT--RPLVFSPNYYQTRQNLLDIESLKV-DDLDIHAYRYV 281 + LG +AL++ I + V P+ L + L+ D+ YRY+ Sbjct: 243 GELFQINLGEKALKAKIDVLKSIQDLSVLEPSLAIMTITLDALNKLEFSDNSSFTPYRYL 302 Query: 282 MKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 P+ R +PK+A+ +ILA LL GM+ I L + Sbjct: 303 EVVEPPLNRSAPKRALIVILATLLAGMLSIFIALVHYFM 341 >UniRef50_P44063 Uncharacterized protein HI0866 n=7 Tax=Haemophilus influenzae RepID=Y866_HAEIN Length = 207 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 43/208 (20%), Positives = 92/208 (44%), Gaps = 12/208 (5%) Query: 128 QQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEV 187 ++ L +++ +T + AQ L +Y+ V + ++ K L L+ S E Sbjct: 2 DKIALKITFSAETPKYAQSVLTEYVNFVSQYSLNQTNQEFKQGFNLRLDELRFSKEQIEE 61 Query: 188 VAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDT------LFLLGSEALESMI 241 E+K +++ + AL A +A + G +I+ LF+L + L++ + Sbjct: 62 NLTEEKKVQVENLTNALDIAKKAGIKD---FSRGNNISDSKLADGTYLFILAEKYLQAQL 118 Query: 242 KHEATRPLVFSPNYYQTRQNLLDIESLKVD---DLDIHAYRYVMKPMLPIRRDSPKKAIT 298 P+V+ NYY T + L + L D+ Y Y+ P P+ +D+PK+++ Sbjct: 119 DIAKNTPVVYPANYYITDRQLFKLNKLASQLELVEDVKTYYYLSSPDYPVVKDNPKRSLI 178 Query: 299 LILAVLLGGMVGAGIVLGRNALRNYNAK 326 L + ++G ++ +L + ++ + Sbjct: 179 LAIGFIIGILLPTFFILLGSVIQTNKKQ 206 >UniRef50_B0KTY6 Lipopolysaccharide biosynthesis protein n=1 Tax=Pseudomonas putida GB-1 RepID=B0KTY6_PSEPG Length = 347 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 67/343 (19%), Positives = 128/343 (37%), Gaps = 25/343 (7%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 S Q E++DL +L +W K+ I + + LA Y + + + I P Sbjct: 3 SEQYRGGEEVDLGELFKSVWAQKVLIAGLTLALLLLAALYAFTRQPVYQADLAIVAPSHN 62 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSA-----------FSALAETLDNQEER- 116 I+ N G A V D+ E S F +L+E+ Q + Sbjct: 63 DISLINYGRGEATGLAVITVKDVYELYARHLYSENARRKVFEEIFFPSLSESQKAQPQNV 122 Query: 117 ------EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDN 170 I + + VS A + EL K+ + Sbjct: 123 LFTRFSRLFVISKTGDDAAARYVVSVSDSEPAAAVKLADALANTAAEMTKSELVKNALSD 182 Query: 171 IALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI-----QQTGEDIT 225 ++ L + + VA+++++ R+ +++EAL A + KP I + + Sbjct: 183 ASMRAVMLDKEISGKREVARKEREDRLIKLKEALSIALSVGLRKPPIITGSASELSARMD 242 Query: 226 QDTLFLLGSEALESMIKHEATR--PLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMK 283 D ++ GSEA+ + I + A R + N Q + + LK+++ Y+ Sbjct: 243 GDLAYMRGSEAIRAEINNMAMRQSDDPYIANLRQLEERMAFYRDLKINEDAFRVYQRDGV 302 Query: 284 PMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 +P + P+K + ++ ++LG +G + L R +R A+ Sbjct: 303 LAVPDQPIKPRKVLIMLGGLVLGAGLGVFVALIRFFVRGKKAR 345 >UniRef50_Q1N5G1 Lipopolysaccharide biosynthesis n=1 Tax=Bermanella marisrubri RepID=Q1N5G1_9GAMM Length = 388 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 62/361 (17%), Positives = 133/361 (36%), Gaps = 46/361 (12%) Query: 10 GQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD--- 66 + ++ ++IDL DL + K+ ++ ++ I LA YL A E + + +I P Sbjct: 12 NRPNNSDEIDLFDLWDDVVENKVWVLAGLLGCIILAALYLLRATEIFETQVVIKPPSDVH 71 Query: 67 ----------VGQIAGYNNAM---NVIYGQAAPKVSDL--QETLIGRFSSAFS------- 104 +++ A+ + I+G A + + L + AF Sbjct: 72 VLELNPPQLSATKLSSKGEAVIYEDEIFGLTAEQAYQEAQKAVLSKEYRKAFFKDHIPVI 131 Query: 105 -----------ALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQ 153 + + N + ++ + K+ + +S+ ++ + L ++ Sbjct: 132 EEFGTVYSDKLLMNQNFANFDRLFSFSVSNAKKDTEQFTKLSFEFPDSQESAELLNAFVV 191 Query: 154 QVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVT 213 K +E++ L + NLQ + + + +++ + + EA A + + Sbjct: 192 YALVKKLEEIKTTLSGKVQAEILNLQYQVDKLKEEYKGERNRTLLLLNEAKHIAEKVGIN 251 Query: 214 KPQIQQTGEDITQDTLFLLGSEALESMIKHEATR-----PLVFSPNYY-----QTRQNLL 263 KP + + L++ GS+AL + I R L F Y+ Q + Sbjct: 252 KPAFDKNQVLTEEPPLYMYGSKALNAEIGAIKNRDSMAKDLSFGEEYFIEGVSQLLYRID 311 Query: 264 DIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 ++ L+VD + + + P PKK + L LA + G G + L A + + Sbjct: 312 QLKKLEVDYSKVKLALIDEEAIPPTSPIKPKKLLILALAGVAGLFGGIMLALIMAAFKRH 371 Query: 324 N 324 Sbjct: 372 K 372 >UniRef50_Q1QWX5 Lipopolysaccharide biosynthesis n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QWX5_CHRSD Length = 365 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 65/345 (18%), Positives = 114/345 (33%), Gaps = 40/345 (11%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAG 72 HD ++IDL LL L G I+ V+ A+ LA YLA+ ++ ++ T AG Sbjct: 8 HDDDEIDLSQLLNHLIDGWYWIVGCVVAALVLAGAYLAMTTPQYETSFRATPAASSNFAG 67 Query: 73 YNNAMNVIYG-QAAPKVSDLQETLIGRFSSAFSALAETLDNQE---------EREKLTIE 122 N Q A + + F + E E R +T Sbjct: 68 MNLLSGFSVSPQDAYTTLGNRLSSFQNFQEYVRSHREAFVIPEGASLGSLFTNRLDITGL 127 Query: 123 PSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSL 182 S N L+++Y E L Y+ ++V EL+ L L Sbjct: 128 TSEVNGASELSLTYRYPEGESGHRILNGYVNATAEQVWSELKNRFARANQAKIAALNTRL 187 Query: 183 RTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDIT-------------QDTL 229 + E +++ R+ + A+ A + P Q + L Sbjct: 188 QVGEDKLLAEREHRLFALDNAISTARALGIEAPTTPQEFGQLNPNKEVIYTSLSGDGLPL 247 Query: 230 FLLGSEALESMIKHEATRPLVFSPN--YYQTRQNLLDIESLK--VDDLDIHA-------- 277 + +G + LE+ + + N R+ L + + + + Sbjct: 248 YFMGYKTLEAERETLKGKLHDGLSNGTLRNIREELEQRHQIADMLKNDSFYPLEEGVSEH 307 Query: 278 -----YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGR 317 + + P+ A+ L LAV+LGGM+G +V + Sbjct: 308 PDERVVSVIERAYPQDAPVKPRSALVLALAVILGGMLGVFLVFMK 352 >UniRef50_C3KAZ7 Putative chain length determinant protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3KAZ7_PSEFS Length = 438 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 66/425 (15%), Positives = 126/425 (29%), Gaps = 102/425 (24%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + N Q ++IDL +L +W+ K II I+A L +GY +A + ++++ Sbjct: 1 MNNTPQLHQYLPTDEIDLFELFHAIWKQKKLIIGCTILAGLLGVGYAFLAPRVYQVSSVL 60 Query: 63 TQPDVGQIAGYNN--AMNVIYGQAAPKV---SDLQETLIGRFSSAFSALAETLD------ 111 + ++ N + A KV D ET +G F + Sbjct: 61 RPAAINELDALNRSEVYKLPPADALAKVGAQLDSYETRLGFFRANLPLFEAFQQPGRSLE 120 Query: 112 ------NQEEREKLTIEPSVKNQ-QLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELE 164 NQ + +P + L + L + + +++ Sbjct: 121 QSFEAFNQNAINLVGADPKKPDALNNYLRLEMQYPNGIDGVAILNGLVAYAITQQREQVG 180 Query: 165 KDLKDNIALGRKNLQ---------------------------------DSLRTQEVVAQE 191 DLK + L+ D L + + Sbjct: 181 ADLKVIVNNRLNELKGKIDAARANYETGKASKIARLLEADKVKRAQLKDELSALRLQMKM 240 Query: 192 QKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQD---------------TLFLLGSEA 236 Q+ R+ ++ EA+ A + P L+ +G+EA Sbjct: 241 QRVSRLAELAEAISIAKSIGINSPTTPSAMGASAVRGAGQVMRTEVTNQKIPLYFMGTEA 300 Query: 237 LESMIKHEATRP-----------LVFSPNYYQTRQNLLDIES------------------ 267 LE+ A R + + + + S Sbjct: 301 LEAERTALAQRSNDDFTNNRVAEISKELRMLDVNREVEVLNSRKDEDIFLQGVEPLWAEE 360 Query: 268 -----LKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA--L 320 L +D + + P+ PKKA+ + L+++ G M+G + L R+ + Sbjct: 361 ARLRGLSIDMSALKLVTVDRQAQEPLGPIKPKKALIIALSLMAGLMLGVLVALIRHFAQV 420 Query: 321 RNYNA 325 R N Sbjct: 421 RRENG 425 >UniRef50_C9P0B3 Lipopolysaccharide biosynthesis n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9P0B3_9VIBR Length = 320 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 63/327 (19%), Positives = 129/327 (39%), Gaps = 27/327 (8%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 V + ++IDL + + LW GK +I++ ++ + + + ++A + Sbjct: 12 TQVQDLSIVNDEIDLRGVFLALWSGKWVVIVTAVLFTIGGVWFALSQPNTYRASATLVSA 71 Query: 66 DVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV 125 + + G + G A+ ++ S + + L E K Sbjct: 72 NDEKSGGLAAMASQFGGLASLAGINVGGGRTDDKSVSLATL--------ESRKFINAFID 123 Query: 126 KNQQLPLTVSYVGQTAEGAQMKLA-QY---IQQVDDKVNQELEKDLKDNIALGRKNLQDS 181 K LP+ ++ E ++ L ++ I+ ++D ++ EK L+ K + Sbjct: 124 KYALLPILMATEYWDKENNKLVLNPEFYDGIRWLNDP--EDPEKSLEPTAWQAYKKFKGV 181 Query: 182 LRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFL--LGSEALES 239 L E + I + + A Q T+ +++ + +++L E LE Sbjct: 182 LNVSEATDTGIVSVSITHL--SPYVAQQ--WTQWLVKELNLWMKEESLTETNRNIEYLEQ 237 Query: 240 MIKHEATRPL--VFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAI 297 + + VF + + L + +K D +A++ + P++P + PK+A+ Sbjct: 238 QLDRTKVVDMQNVFY-QLIEEQTKTLMLAEVK----DEYAFKVIDPPVVPEEKVGPKRAL 292 Query: 298 TLILAVLLGGMVGAGIVLGRNALRNYN 324 ILA L GG++G IVL R A R N Sbjct: 293 ICILATLFGGILGVAIVLIRYAFRREN 319 >UniRef50_A7I0H6 Chain length determinant protein n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I0H6_CAMHC Length = 370 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 56/311 (18%), Positives = 123/311 (39%), Gaps = 35/311 (11%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 ++IDL++L LW GK+ II+ +V + + I Y +A + ++A++ ++ Y Sbjct: 8 KDDEIDLVELFATLWNGKIKIIVITVVFLVVGILYTLIATPWYKASALV------EVGYY 61 Query: 74 N-NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPL 132 N N V+ + ++ E L R+ D + + + +KN Sbjct: 62 NTNENGVVKNVMLEEPKNIIEKLKTRYIDLLK------DVEGKDVYVKSVNEIKNNNKFF 115 Query: 133 TVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQ 192 ++ +G++ E A + + IQ V D+ N+ ++ + + N++D ++ + + Sbjct: 116 SIEVLGKSNEKAVKMIDEMIQSVSDEHNKIIDGYISSQ-KVKLANIEDQIKVLQNDKMGE 174 Query: 193 KDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFS 252 + +I +++ LQ + + L ++ K + Sbjct: 175 TENQINNVEQNLQMQKAGALN---------------------DILSALQKELKELTDIQK 213 Query: 253 PNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAG 312 T + L ++ + V + + + PKK I L +A+L G MVG Sbjct: 214 IELKNTLLGQKSVIELTLEPFNYKNTSVVSQIITSKHPEKPKKLIILAVALLAGAMVGVF 273 Query: 313 IVLGRNALRNY 323 VL + ++ Sbjct: 274 WVLFADFMKKR 284 >UniRef50_A4Y8H9 Lipopolysaccharide biosynthesis n=30 Tax=Gammaproteobacteria RepID=A4Y8H9_SHEPC Length = 329 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 56/333 (16%), Positives = 117/333 (35%), Gaps = 59/333 (17%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 ++IDL +L +W+GK II + A+ + + S A++ Q G Sbjct: 22 QDDEIDLRELFSVIWQGKWLIIAITAIFAVGAVIFAIKQPNIYKSEALLAPVSEEQGGGL 81 Query: 74 NNAMNVIYGQAAPKVSDL-----------------QETLIGRFSSAFSALAETLDNQE-- 114 + + G A+ +L F + LA+ + ++ Sbjct: 82 SALASQFGGLASLAGVNLGGKNGTDKTQLAIEVLKSRQFTSEFIQKHNILADLMAAEKWD 141 Query: 115 -EREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIAL 173 + +K+ P++ N+Q + QE K I++ Sbjct: 142 ADADKIIYAPALYNEQTNT-------------WVREVKAPIKPEPSMQEAYKVFNKIISV 188 Query: 174 G--RKNLQDSLRTQE---VVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDT 228 ++ +L + +VAQ+ I+ I + ++ + A+ + Sbjct: 189 NSVKETGMVTLSVEHLSPIVAQQWVTWLIQDINKVMKDRDVAEANRS------------- 235 Query: 229 LFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPI 288 SE L I + + Y + I + + D + ++ + + P Sbjct: 236 -----SEFLNKQI-ALTNVADIRTILYKLVEEQAKTI--MFAEVRDEYVFKTIDPALAPE 287 Query: 289 RRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 + PK+A+ +L +LGGM+G +VL R+ +R Sbjct: 288 EKAKPKRALICVLGTILGGMLGVMLVLVRHFMR 320 >UniRef50_A4BIX4 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BIX4_9GAMM Length = 360 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 56/354 (15%), Positives = 117/354 (33%), Gaps = 44/354 (12%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 + HD ++IDL L+ QL I+ + + + + +++ A+ +P + Sbjct: 11 RPHDNDEIDLGQLIKQLIAQWPLIVGITFLGAVVGVVVALMLPKQYRVEAVFDKPSTTHL 70 Query: 71 AGY------------------------NNAMNVIYGQAAPKVSDLQE-TLIGRFSSAFSA 105 + N +V+ +D + + R+S Sbjct: 71 SSLISQPFVDLSRQQLLEDFLKNLKTPNLIESVLDSHGLMVDNDGKALSAEKRYSLVLRM 130 Query: 106 LAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEK 165 E + + ++VS + AQ + ++ K + Sbjct: 131 SQALRVAPVEYDFIQTLQDETPTIDQISVSLLSSEPAIAQTLINGLLEAASAKTLADTLS 190 Query: 166 DLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDIT 225 D++ + LQ L + A QK + +++ AL A + +T+P T + + Sbjct: 191 DIEGAKQIALSQLQADLNQLKEAALAQKQEHLLRLRSALDVAQELNITEP----TDWEAS 246 Query: 226 QDTLFLLGSEALESMIKHEATRPLVFSPNY--------------YQTRQNLLDIESLKVD 271 Q L+L G+ L + IK + SP + L + +V Sbjct: 247 QGELYLKGTRILSAEIKSLESAQPNLSPIIVGYDEEGLAQTISPESIQGRLGALSDYEVP 306 Query: 272 DLDIHAYRYVM-KPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 + + +P + P + + + A +L G G L R A+R + Sbjct: 307 STEALQFVGSEVAANIPANAEKPNRKLIAVAATVLAGFFGLFTALIRIAIRRED 360 >UniRef50_C4K3Z7 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3Z7_HAMD5 Length = 308 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 70/348 (20%), Positives = 120/348 (34%), Gaps = 89/348 (25%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 + N ++IDLIDLL ++ K+ I I + ++ EKWTS AIIT Sbjct: 20 SENTLDLKPSTDEIDLIDLLAIFFKNKVKIFFITIFFVIVSALICYKLPEKWTSKAIITY 79 Query: 65 PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETL-------------- 110 D Q+ + ++ ++ Q+ L+ F F++ Sbjct: 80 IDDNQLQPF-ELLSYKLKLFDISLNFDQKNLLSLFIQLFNSNVLKEKYLVNTSYFQKLIK 138 Query: 111 DNQEEREK----------LTIEPSVKNQQLP----LTVSYVGQTAEGAQMKLAQYIQQVD 156 D+ E R + + S K T+SY TA+ AQ L YI + Sbjct: 139 DHPENRNQFMLDIIKNIHIEYSKSNKENDFKGYVFYTLSYSADTAKDAQNLLNGYINYIS 198 Query: 157 DKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQ 216 +++L + + I + + L Sbjct: 199 AIFDEKLNNKITNKINIKKSVLSF-----------------------------------I 223 Query: 217 IQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIH 276 I G I D N + L ++S+K+ D+ I Sbjct: 224 IDNKGMSINDD-------------------------VNLPMAKLQLEKLQSIKLSDIKII 258 Query: 277 AYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 + Y+ KP P+++DSP+ A ++L+ + G MV VL ++ L N Sbjct: 259 PFEYLQKPNEPVKKDSPQSAFIILLSGMAGLMVSMFYVLVQHYLSQRN 306 >UniRef50_Q5R093 Chain length determinant protein n=1 Tax=Idiomarina loihiensis RepID=Q5R093_IDILO Length = 336 Score = 97.1 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 60/329 (18%), Positives = 119/329 (36%), Gaps = 44/329 (13%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 ++IDL +L +W GK II V ++ Y + + A + + Q G Sbjct: 33 QDDEIDLRELFGIIWDGKWIIIAITFVFAVGSVIYSLSLPNIYKAEATLAPTEEAQGQGL 92 Query: 74 NNAMNVIYGQAAPKVSDLQ-------------ETLIGRFSSAFSALAETLDNQEERE--- 117 + + A V + I F + L E + +E E Sbjct: 93 GGELGGLANLAGISVGSGKVDKVTMAMEILQSRQFIKNFVQKHNILPEIMAVKEWNESSG 152 Query: 118 KLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKN 177 +L V N V + + A V V + KD G N Sbjct: 153 ELVFNEEVYNPNANKWVRKTESSKQPAPT------SWVYVNVFKNGLLVEKDEETPGLVN 206 Query: 178 LQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEAL 237 L S R+ ++A + I+ I + + Q + + Q+ + Q+ LG L Sbjct: 207 LSVSHRS-PIIAHRWAEWLIQDINDHM---RQRDIKE---AQSSMEYLQNE---LGETNL 256 Query: 238 ESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAI 297 SM + VF + + + + +++ + + ++ + ++P ++ +P +A+ Sbjct: 257 SSMQQ-------VFY-QLIEKQIQTIMLANVRPE----YVFQVLDPAVVPEQKSAPSRAL 304 Query: 298 TLILAVLLGGMVGAGIVLGRNALRNYNAK 326 I+ LGG + +V R+ +R+ +K Sbjct: 305 ICIVGTFLGGFLSLLVVFIRHLIRSSKSK 333 >UniRef50_C6MYW2 Putative Wzz n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MYW2_9GAMM Length = 344 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 51/312 (16%), Positives = 115/312 (36%), Gaps = 29/312 (9%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 +I LI+L ++ K ++++ ++ +AL + +K + + +T G IA + Sbjct: 6 SNTEISLIELFHLFYQKKRVLVLTTLLGLALGFAVVFFSKPVYEAAIKVTAASEGDIAAF 65 Query: 74 NNAMN-VIYGQAAPKVSDLQETLIGRFSSA------FSALAETLDNQEEREKLTI----- 121 N + +D+ S F+ + + +++EK + Sbjct: 66 NLGRSWNKSALKPMSAADIYLIFNNELLSETAKKAFFNQFYLSSLSLQQKEKYSSAHLYA 125 Query: 122 -----------EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDN 170 V T++ G + + L Q++ V + ++ ++K Sbjct: 126 SFIKNFAIIEHPKGVSEAFSKFTIAIRGDNPQQVTIWLKQFLHVVQAQTLTKILNNIKQQ 185 Query: 171 IALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLF 230 ++ NLQ + A+ ++ RI Q++E ++ A A+ + + + + Sbjct: 186 NSVLVYNLQQQIDRARETAKVERHDRITQLKETMRIAQLARQNEDDLFDSALNTKYPPNP 245 Query: 231 LLGSEALESMIKHEATR--PLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPI 288 L L + IK+ + R F P + L +SL V+ + + P Sbjct: 246 AL----LRAEIKNLSARKSDDAFIPKLRTLQAELDFYKSLAVNRNQVAVFHLDGAIETPN 301 Query: 289 RRDSPKKAITLI 300 SPKK + ++ Sbjct: 302 TPISPKKRLIMM 313 >UniRef50_A0B7Q9 Lipopolysaccharide biosynthesis n=1 Tax=Methanosaeta thermophila PT RepID=A0B7Q9_METTP Length = 280 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 49/313 (15%), Positives = 121/313 (38%), Gaps = 42/313 (13%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN 74 ++IDL D++ LW + ++ ++A+ A + + ++ ++ + + Sbjct: 6 DDEIDLRDIIRVLWENRFLVVGIFLIAVVAAGAVSIMMPSVYRASCLVA------LGNFG 59 Query: 75 NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTV 134 + + I A+ ++ + + S + + E ++++ IEP VK L++ Sbjct: 60 DPVYTIQSGASEILTS--DAFVLDLLSRLNLSLSPGELAEFKDRMRIEP-VKGSDRLLSI 116 Query: 135 SYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKD 194 S E + L + + +D+ NQ + R L + L + + Sbjct: 117 SMETTDPEEGKRILREMVSLFEDRSNQ--------SYTEQRGLLLEQLSAT-NQLLDSVE 167 Query: 195 LRIRQIQEALQ-YANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSP 253 I Q +A++ V+ + ++ + +++ ++ L Sbjct: 168 ESINQTHQAMKEIEGATGVS---SLEKSMLLSYKLDY----------LQNAESQRLGLMD 214 Query: 254 NYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGI 313 Y + L+ ++SL++ V P +P++ P++ + + +A +LG M+G Sbjct: 215 RYMNLHKQLILMKSLEI----------VEAPAVPLQPVKPRRMLIVGVAGMLGLMLGVFA 264 Query: 314 VLGRNALRNYNAK 326 R ALR + Sbjct: 265 AFLRVALRREEQR 277 >UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YWK9_LISDA Length = 352 Score = 94.0 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 62/342 (18%), Positives = 125/342 (36%), Gaps = 38/342 (11%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 Q++L+++ LW K+ IIIS I+ I LA+ + + W S+A IT+P A + Sbjct: 10 QDNQLNLLNIFRVLWTRKLIIIISTIIGIVLALIVSIYSAQWWESSAEITKPQYSDYAVF 69 Query: 74 -NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKN----- 127 ++A + G + + ++S + L + + ++ I S Sbjct: 70 ISSADQLTTGSNPSESLKSIINIEKNYNSFINILTSKTNKIDFLQQSNIIKSYFIRDGVK 129 Query: 128 -------------------------QQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 + V T + + L YI+ +K N + Sbjct: 130 TDIQKDKALDLWAEKIIVKKESLILNKSSYIVIAQANTLDDSFKLLNNYIKFTKNKYNSD 189 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 + L+ + NL+ L + K L+ ++ Q AL A ++ + P Sbjct: 190 VLLSLETFKRIELLNLKKQLDYNISYTLDIKKLKEQKAQLALNIAEESGIESPL--NNYF 247 Query: 223 DITQDTLFLLGSEALESMIKH--EATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHA-YR 279 + LG++AL + +F+ L + ++K+ +L+ +A + Sbjct: 248 EKGSSFNIALGAKALRAEKNVISSLKDLAIFNDKITLLSSQLNYLNNVKLSNLENNAFFS 307 Query: 280 YVMKPMLPIRRDSP-KKAITLILAVLLGGMVGAGIVLGRNAL 320 Y+ + +P KK L+ ++L + G I L Sbjct: 308 YIQTEHKNPNKIAPSKKTFILVFSLLFACI-GIVIALVIEIF 348 >UniRef50_A5UI14 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae RepID=A5UI14_HAEIG Length = 167 Score = 92.9 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 75/202 (37%), Gaps = 40/202 (19%) Query: 128 QQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEV 187 ++ L +++ +T + AQ L +Y+ V+ + ++ K L L+ S E Sbjct: 2 DKIALKITFSAETPKYAQSVLTEYVNFVNQYSLNQTNQEFKQGFNLRLDELRFSKEQIEE 61 Query: 188 VAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATR 247 E K +++ + AL A Sbjct: 62 NLTEAKKVQVENLTNALDIA-------------------------------------KNT 84 Query: 248 PLVFSPNYYQTRQNLLDIESLKVD---DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVL 304 P+V+ NYY T + L + L D+ Y Y+ P P+ +D+ K+A+ L + + Sbjct: 85 PVVYPANYYITDRQLFKLNKLASQLELVEDVKTYYYLSSPDYPMVKDNSKRALILAIGFI 144 Query: 305 LGGMVGAGIVLGRNALRNYNAK 326 +G ++ +L + ++ + Sbjct: 145 IGILLPTFFILLGSVIQTNKKQ 166 >UniRef50_Q0FE97 OtnB protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FE97_9RHOB Length = 310 Score = 90.6 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 56/229 (24%), Positives = 98/229 (42%), Gaps = 38/229 (16%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII-------TQPDV 67 ++IDL DL LWRGK+ II+ IV++ A +L A+ K+T + T P + Sbjct: 10 RDEIDLKDLFSALWRGKIFIILVSIVSVFFASFHLQSAERKYTIEYNLKPVGETKTSPSL 69 Query: 68 GQIAGY------------NNAMNVIYG-----QAAPKVSDLQETLIGRFSSAFSALAETL 110 + G+ NN +N+ + A + + ++ + FSS ++A +L Sbjct: 70 SGLGGFASIAGIQLPTSSNNDLNIFKSLITSVEVAEIIFENKKIIKDIFSSEWNA---SL 126 Query: 111 DNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEK-DLKD 169 +N R+K + V N + LT + +LA +I Q + ++N+E E LK Sbjct: 127 NNYSRRQKTKAQTLVGNVKELLTGNKAANYVPPNPRRLAIFITQ-NVQINEEKETGFLKF 185 Query: 170 NIALGRKNLQDSLRTQEVVAQEQ------KDLRIRQI---QEALQYANQ 209 + +L SL A ++ D I + +E L+ A Sbjct: 186 TSETSKPDLILSLIIDAARASDKIMRQRYVDFSIEPLAFYKEKLRTARS 234 >UniRef50_C7RAP5 Lipopolysaccharide biosynthesis protein n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAP5_KANKD Length = 328 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 54/321 (16%), Positives = 110/321 (34%), Gaps = 30/321 (9%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD------V 67 E+IDL +L +W+GK II I ++ ++ +TAI+ D + Sbjct: 23 QEEEIDLRELFSIIWQGKWLIIAITIFFAIGSVALALWLPNEYKATAIVQPNDSGRGGKL 82 Query: 68 GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKN 127 ++G + + G + +++ + +D E L + Sbjct: 83 ASLSGQFGGLASLAGVNLGAAESTDAVIAIEIMNSWGFAEQFIDKHELDVPLFAAEGWEE 142 Query: 128 QQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEV 187 L + + + + + + EL + L+ + + + Sbjct: 143 STDQLQLDEDIYDPQRNEWVRQAPKGKTVEPTSWELYEQLRKRLLISQDA---------- 192 Query: 188 VAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGS--EALESMIKHEA 245 E+ + I + + A Q T +Q E + + L + LE I + Sbjct: 193 ---EKGLVNISVTHYSPRIAKQ--WTDWLVQDINEHMKERALKEANESIKYLEEQINQTS 247 Query: 246 TRPL--VFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAV 303 + VFS Q + + + D + ++ V + P +D PK+A+ I+ Sbjct: 248 VAEIRAVFS-ELIQEQHKTKMLAQVS----DEYVFKTVSEAKAPEEKDKPKRALICIIGT 302 Query: 304 LLGGMVGAGIVLGRNALRNYN 324 LLGG + IVL + Sbjct: 303 LLGGFLSLFIVLMSGLYKREK 323 >UniRef50_A3JJA1 Lipopolysaccharide biosynthesis n=1 Tax=Marinobacter sp. ELB17 RepID=A3JJA1_9ALTE Length = 378 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 66/366 (18%), Positives = 128/366 (34%), Gaps = 56/366 (15%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWT-STAIITQPDVGQI--A 71 ++IDL ++ +W G+ +I VI+A+ ++I + E + STA+ P I + Sbjct: 9 DDEIDLFEIFETVWDGRWRVIGIVILAVLISIAVNVLKPELYNGSTALSKAPSSSFIKYS 68 Query: 72 GYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLT-IEPSVKNQQL 130 N + A + + + F+ + + +++L IE +N L Sbjct: 69 SVNETLQQSGFSYAISSQSVFDMFVTEFADYDEVVKILEKSDYIKQRLQAIEIEDRNDFL 128 Query: 131 PL-----------------TVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLK---DN 170 ++ Y + + ++ Q I+ V V Q + D+ Sbjct: 129 VYMAKNFEILPPSENGNHWSLDYEWRDSNESKKIFTQSIEDVLANVRQTILSDIDELART 188 Query: 171 IALGRKNLQDSLRTQEVVAQEQKDLRIRQ----IQEALQYANQAQVTKPQIQQTG----- 221 +++ KN + L V ++ +L + + + E A + V K + G Sbjct: 189 VSIRNKNKKQRLNADLVALEDAINLDLAKRLLYLNEQTAIAKELGVEKNSLNGNGLFQSQ 248 Query: 222 -------EDITQDTLFLLGSEALESMIK----HEATRPLVFSPNYYQTRQNLLDI----- 265 + +L G +A++ I L + Y + L I Sbjct: 249 NTGVSLSVTSSDIPFYLRGFKAIDKEIDLLFSRSKEDRLAINNTYVSIKTQLSSIHNDVS 308 Query: 266 ------ESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 V D D+ ++ L K + ILA +LG MVG VL +A Sbjct: 309 MQQIMSAKGSVADDDVTSW-LAYDLSLATTSSQSKPVLYAILAAMLGLMVGVFNVLVSSA 367 Query: 320 LRNYNA 325 +R + Sbjct: 368 VRKRKS 373 >UniRef50_B8KUX8 Chain length determinant protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KUX8_9GAMM Length = 351 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 63/329 (19%), Positives = 117/329 (35%), Gaps = 52/329 (15%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYL-AVAKEKWTSTAIITQPDVGQIAGY 73 ++IDL +L+ LWR + I+ + A GY+ +A + A I + G Sbjct: 40 DDEIDLFELIAGLWRRRFLIVALTAAFVIAAAGYVTLIATPTFVVEARIRPATEQALIGL 99 Query: 74 NNAMNVIYGQAA-----PKVSDLQETLIGRFSSAFSA-------LAETLDNQEEREKLTI 121 N A + G AA + L F + S+ E + RE+L + Sbjct: 100 NKARSFSVGPAAALAQFSAEFQSRSVLQSAFDAVMSSNPGTVAWTGEEMPPSLTREQLFL 159 Query: 122 E-----PSVKNQQLP------LTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDN 170 E +++ + +P +S+ Q AE + L IQ+ + N Sbjct: 160 EGFLPRINIEEETVPSGNESIRLLSFEAQNAEAGRDTLDAIIQRAKAAATTAITNSFTAN 219 Query: 171 IALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLF 230 + L N+ R E + + D R + A + A +TG+ I Sbjct: 220 LDL---NISQRKRELERILAQIADGRTDMTRIATEVAQS---------ETGQGIAVADSS 267 Query: 231 LLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRR 290 + ++ + ++ E L ++ + +D ++ R P+ P R Sbjct: 268 GVRYTSVSAQLQAEI--------------AQLEVLQKIPLD--NLQVIRIDQPPIAPTRP 311 Query: 291 DSPKKAITLILAVLLGGMVGAGIVLGRNA 319 PKK + + A + G + + L NA Sbjct: 312 VKPKKTLIVAAAGVAGALFSLLVALVLNA 340 >UniRef50_C1DT90 Ferric enterobactin transport protein n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DT90_SULAA Length = 277 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 44/323 (13%), Positives = 95/323 (29%), Gaps = 59/323 (18%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII---- 62 ++ Q + ++IDL +L +LW+ K I ++ +A +++TS + I Sbjct: 2 SLENQKYCEDEIDLFELFEKLWKRKKIIFSITLLGTLIATLVAFTIPKQYTSESSIVVVN 61 Query: 63 --TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLT 120 T P + ++ + P ++ ++ + E + Sbjct: 62 INTSPSLSLDRESLYILSQLNFPILPILNSKDLAEKVLKNNNLNIEPEKFIKNNLKVDQD 121 Query: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD 180 + + +S A+ Y+ ++ VNQ L + L Sbjct: 122 KKSGQNKKNEVFRISISWYDPNTAKKLNEDYLIELKKVVNQNLNQFL------------- 168 Query: 181 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESM 240 ++ Q QK L + I+ + ++ ++ E I+ Sbjct: 169 ----TQLENQYQKRLELLNIEYKKAMVEKDELKMELVKNQVEKISSG------------- 211 Query: 241 IKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLI 300 +E K + + V P P PKK + L Sbjct: 212 ---------------------YYLLELFKNNKEGF--IKVVNSPSYPTAPSKPKKGLILA 248 Query: 301 LAVLLGGMVGAGIVLGRNALRNY 323 + + + + L A N Sbjct: 249 IGFVSSLFLSLFVALVVEAWENR 271 >UniRef50_D0WWA9 Putative uncharacterized protein n=3 Tax=Vibrio harveyi group RepID=D0WWA9_VIBAL Length = 300 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 53/328 (16%), Positives = 113/328 (34%), Gaps = 43/328 (13%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ------ 64 ++ ++D+ +L+ LW+ K+ I+ V ++ + + S A++ Sbjct: 1 MENNQLELDIGELIRSLWQQKIMIVAITFVFAVASVLFAMSKPNLYKSEAVLFPVADNTP 60 Query: 65 -PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAF-------SALAETLDNQEER 116 +GQ+ G +++ + L+ F AF L Sbjct: 61 SSAMGQLGGLAALAGFGSQKSSKQAIALESLRSRAFLGAFIERRNILIPLMAIEHWDATS 120 Query: 117 EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRK 176 K+ I+P + ++ V + L KV EL + D+ Sbjct: 121 GKVYIDPKIYDESTDTWTRVVSEGKTPKPTILE------ATKVLNELL--VIDSNKTSGS 172 Query: 177 NLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEA 236 + +A++ D I + E + I Q +I + Sbjct: 173 TIVSLTNQSPDLAKQWLDWLISDLNEWM--------KNKDINQAKNNI----------QY 214 Query: 237 LESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKA 296 LE + + + + Y + + + + + + + + P++P +DSP +A Sbjct: 215 LEKQL-NLTNLSEMQNVFYQLVEEQTKKL--MLAEAQENYIFDIIDPPVVPEEKDSPSRA 271 Query: 297 ITLILAVLLGGMVGAGIVLGRNALRNYN 324 I +L L+GG++ I L R AL + Sbjct: 272 IICVLGTLIGGVLAMVIALFRIALSRKH 299 >UniRef50_C6NU30 Lipopolysaccharide biosynthesis n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU30_9GAMM Length = 276 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 62/311 (19%), Positives = 112/311 (36%), Gaps = 59/311 (18%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 ++I L +L +LWRGK ++ S +V +ALA YLA + + S AI+ Sbjct: 20 PEDEISLWELWERLWRGKWLVVGSSVVFLALAGLYLATSTTIYQSKAIV----------- 68 Query: 74 NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLT 133 + ++ GQ S L + + + T++ +++ ++ K+ L Sbjct: 69 --QVGMVAGQPLANTSLLAQKVYNNYRP-----VNTIEAKKQLPRIHSASVEKSDANLLE 121 Query: 134 VSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQK 193 + G++ E AQ L +Q + + + LK + K LQ R E + Sbjct: 122 LESYGRSPEEAQSYLHSIVQSLLSREQDRYAQTLKFH-QTQLKELQRQYRALETSSPSDT 180 Query: 194 DLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSP 253 + AL + Q F S L+ + E Sbjct: 181 RHTKHREPSALLL-----------------LEQSMRFSEASSLLQQIANAEN-------- 215 Query: 254 NYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGI 313 ++ + V +P SPKK + LILA+ G VG + Sbjct: 216 ---------------QLSPANTRPPEVVRQPSYDPVAVSPKKLVVLILALFGGLFVGILV 260 Query: 314 VLGRNALRNYN 324 VL R++ ++ + Sbjct: 261 VLLRSSRKSND 271 >UniRef50_Q1YPV1 OtnB protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPV1_9GAMM Length = 312 Score = 77.9 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 47/332 (14%), Positives = 110/332 (33%), Gaps = 43/332 (12%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 ++N + Q +D ++IDL +L LW GK I+ V +++ Y ++ ++A++ Sbjct: 1 MQNQIQTPQPYD-DEIDLRELFSVLWAGKKLIVAVTAVFAVVSVIYALSLANQYKASAVV 59 Query: 63 TQPD---------VGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQ 113 + GQ+ G + + G + ++ ++ + + Sbjct: 60 SPAHSGGSSLGAMAGQLGGLASLAGINIGSGESNETQEAMEIM----QSWGFIEAFIQTH 115 Query: 114 EEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVD-DKVNQELEKDLKDNIA 172 + + L + A + + + + L ++ K +A Sbjct: 116 ALQVPVYAATGWDKGSNSLKLDDDLYDAASKRWLIEDSASGENRAPSSWALYQNFKSRVA 175 Query: 173 LGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLL 232 + + ++ + + + Q A Q + I ++ Sbjct: 176 VSQD-------------KKSGLINVSVEYYSPQIAKQ------WVDLFISTIND---YMR 213 Query: 233 GSEALESMIKHEATRPLVFSPNYYQTRQNLLDI------ESLKVDDLDIHAYRYVMKPML 286 + + E + R+ + + + +A+ V + M+ Sbjct: 214 ARKLEQVNRNIEYLTVQIEKTAIADMREVFYQLIEEQTKSKMLAEASPEYAFVTVSRAMV 273 Query: 287 PIRRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 P ++ PK+A IL LLGGM+ VL R Sbjct: 274 PEQKSQPKRARVCILGTLLGGMLSVLWVLVRR 305 >UniRef50_Q21IT7 Lipopolysaccharide biosynthesis n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IT7_SACD2 Length = 340 Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 44/317 (13%), Positives = 89/317 (28%), Gaps = 25/317 (7%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAG 72 + + L +L +W GK II A+ Y + ST ++ G Sbjct: 32 SQYDGVTLGELWGAIWGGKFLIIAITAFFSISALFYALSLPNMYKSTLVLAPAQAEGKGG 91 Query: 73 YNNAMNVIYGQAAPKVSDLQETLIGRFSSA------FSALAETLDNQEEREKLTIEPSVK 126 G AA +L R A + L + + ++ Sbjct: 92 MGALAAQYGGLAAMAGINLGGGDSARIKQAIELIKSWPFLESFISKYNLKSQIMAVQGWD 151 Query: 127 NQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQE 186 + L Y L + + + + + + L + Sbjct: 152 RKTAKLIYDYDTYNPVTNAWMLGEGAGEPSSWSTYRVLSSMLSVSNDATTGMLN-LSVEH 210 Query: 187 VVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEAT 246 + + E + Q + Q + L + I E Sbjct: 211 YSPEVAYKWVNLLLLEINSFYQQQDIRDAQKNI---------------DYLNAKI-AETN 254 Query: 247 RPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLG 306 + S Y + + + D + + V+ + +R P + + +L V+ G Sbjct: 255 ISEMKSVFYSMIESQTKTL--MLAEVSDQYLVKSVVPAKVAEQRSKPNRVLICVLGVMFG 312 Query: 307 GMVGAGIVLGRNALRNY 323 G+VG +VL +N+ Sbjct: 313 GLVGFILVLLLYFSKNH 329 >UniRef50_A6F1J1 Chain length determinant protein n=1 Tax=Marinobacter algicola DG893 RepID=A6F1J1_9ALTE Length = 317 Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats. Identities = 46/329 (13%), Positives = 120/329 (36%), Gaps = 36/329 (10%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD 66 + ++ ++ID+ +L LW GK III+ A + Y + + ++ ++ + Sbjct: 10 SSETRHCSDDEIDIRELFFTLWAGKWIIIIATAAFAAGGVVYALSKPDIYQASVLLAPTE 69 Query: 67 VGQIAGYNNAMNVIYGQAAPKV---SDLQETLIGRFSSAFSALAETLDNQEEREKLTIEP 123 +G + + + A + + + + + + L++ + E L Sbjct: 70 GSSGSGLSGQLGGLASLAGVSIGADASSKTVIAKEVLQSRAFLSDFISRHELAVPLMGTN 129 Query: 124 SVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLR 183 ++ ++ A+ A+ + N +L K LK+ +N ++ + Sbjct: 130 GWNFRERSWVFNHKVYNADAAEWRNN------SMPTNWDLVKKLKEQHVSVSENEENGMV 183 Query: 184 TQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKH 243 T V + Q + +Q L + ++ + E+ Sbjct: 184 TVRV--KSQSPVAAQQWATWL-------------------VRDINEYMRSQDIEEAEASI 222 Query: 244 EATRPLVFSPNYYQTRQNLLDI------ESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAI 297 + + + N +Q + + + + ++ V ++P + PK+A+ Sbjct: 223 QYLKTKLTETNITGMQQVFYQLIERETRTVMLANAQREYVFKTVDPAVVPQEKSQPKRAL 282 Query: 298 TLILAVLLGGMVGAGIVLGRNALRNYNAK 326 +++A +LGGM+G I+ R + + + Sbjct: 283 IVVVASMLGGMLGVVILFFRAFILSCPPQ 311 >UniRef50_A6ASH0 OtnB protein n=10 Tax=Vibrio RepID=A6ASH0_VIBHA Length = 336 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 44/314 (14%), Positives = 110/314 (35%), Gaps = 25/314 (7%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN 74 + +D+ ++L ++ GK+ I I L++ + + + + A+++ + +G + Sbjct: 25 NQSVDIREILKAIYSGKLYITFVTIAFCILSVFFALSRPDIYQADALLSPAENSSSSGLS 84 Query: 75 NAMNVIYGQAAPKVSDLQ--ETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPL 132 G AA +L E+ + + +++ + L I N Sbjct: 85 QMAGQFGGIAALAGVNLNAGESSQTELAVQVMQSRKFIESFINKHDLLIPIMAVNNWDIG 144 Query: 133 TVSYVGQ---TAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVA 189 + S E + L K L+ + + ++ VA Sbjct: 145 SGSLNIDADIYNEDTKEWLRD-------------SKGLRVAKPSTLEAYEIFIKDIFQVA 191 Query: 190 QEQKD--LRIRQIQEALQYANQ-AQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEAT 246 Q++ RI + A + I + + T + ++ L+ + Sbjct: 192 QDKDSGLYRITVNYYSPYVAKEWVDWLVADINEVMRNRTIEET----TKNLKYLSDQLVK 247 Query: 247 RPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLG 306 P+ + + + + + ++ V ++P + PK+++ +I+ +G Sbjct: 248 TPITEMQSTFYKLIEEQTKSLMLAEAQEEFVFKVVDPAVVPELKSKPKRSLIVIVGTFMG 307 Query: 307 GMVGAGIVLGRNAL 320 M+G +VL R A+ Sbjct: 308 FMLGLALVLIRYAI 321 >UniRef50_C3K6I8 Conserved hypothetical chain length determinant protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K6I8_PSEFS Length = 218 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 5/157 (3%) Query: 4 ENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT 63 N + + HD ++IDLI L+ LW K+TII + +V A+ A + E+WT++ IT Sbjct: 3 SPTNSNARPHD-DEIDLIPLIQTLWNSKITIIATTVVGAVAALTLSATSPEQWTASTYIT 61 Query: 64 QPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRF-SSAFSALAETLDNQEEREKLTIE 122 +P + +N A L+ L + F + + + K Sbjct: 62 KPS---LYSLYKEINEKDAPAKASPLSLETKLYSTIQNDIFYSAMGIMAAKSVALKDAPP 118 Query: 123 PSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKV 159 S ++ + S +TA A +L ++ + + Sbjct: 119 KSGGSEPVLYIASTTAKTAALASAQLKSAMETANTEA 155 >UniRef50_O66795 Putative uncharacterized protein n=1 Tax=Aquifex aeolicus RepID=O66795_AQUAE Length = 433 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 58/360 (16%), Positives = 137/360 (38%), Gaps = 52/360 (14%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ--------PDV 67 ++IDL +L V L + I++++++ IA A+ Y+ +A + + A+I P + Sbjct: 63 DEIDLYELWVVLKKRFRVILLTLVIFIAGAVAYVFIAPPVYKTEAVIFPIGGEKTNLPSI 122 Query: 68 GQ--IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEP-- 123 + + + + ++ K L+E +I + + + D + +EP Sbjct: 123 LEGLPVPLPSVADKVTVESVLKSRTLRERVIEKLNLMPVLFKDLWDESRNTWRQDLEPED 182 Query: 124 ---------------SVKNQQLPLTVSYVGQTAEG-------AQMKLAQYIQQVDDKVNQ 161 SV + + T+++ + E AQ+ L + + +++K Sbjct: 183 IPTILDGAELLEDLISVSSNKKTGTITFSVEFPEDPHMAYKIAQVSLEEAYKILNEKSWS 242 Query: 162 ELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTG 221 +K + + K + + + E V + I+++ + +++ K + Sbjct: 243 LAKKH-RIFLENQIKEVLNKQKVLEEVYLKFIKGEIKEVPIVVDERFISKIFKESLNYEN 301 Query: 222 EDITQDTLFLLGSEALESMIKHEA--TRPLV-FSPNYYQTRQNLLDIESL---------- 268 D L + LE I R L + NY + + +++L Sbjct: 302 NDKFDIPGNL--KQNLERNIPIAKGMNRNLPEYQFNYQKLQWQFEVLKNLLSTLFQQYQI 359 Query: 269 -KVDDLDIHA-YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 K +++ ++ + P +P + PKKA+ L ++ + G G + + L N + Sbjct: 360 AKANEVKESVSFQIIDPPYIPQKPAKPKKALILAVSFVSGLFTGIFLAFFKEWLNNARKR 419 >UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinobacillus pleuropneumoniae RepID=A3N2K1_ACTP2 Length = 292 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 57/345 (16%), Positives = 106/345 (30%), Gaps = 103/345 (29%) Query: 26 QLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVI----- 80 L R T+IIS V +A G ++ + W +TA P V + Y + Sbjct: 1 MLLRYLFTLIISTAVGVAGGFGLSSLDTQTWKATAEFEPPKVSTLGNYYTLFSTYTFLNG 60 Query: 81 -YGQAAPKVSDLQETL------------------IGRFSSAFSALAETLDNQEEREKLTI 121 G + ++D + +L F + ++ + E + + Sbjct: 61 GDGVSYNVIADDKGSLSLAPEIGRKAEDSATLGSYNEFKRNLISTDVLVEFLTQTETVKL 120 Query: 122 EPSVKNQQLPLT---------------------VSYVGQTAEGAQMKLAQYIQQVDDKVN 160 + + +Q + +T +S E A L +I + + Sbjct: 121 KAQLTHQPIVMTAQSLAEQFVFQAATKTQPFDSLSVRSANPEEAYKLLNDFIAFANQQTK 180 Query: 161 QELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQT 220 Q L + KNL +++ A + IQQ Sbjct: 181 Q----TLNAELVAKWKNLFQQIKS------------------------AADIKLGAIQQG 212 Query: 221 GEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRY 280 + TQD L + S++ D + A+R+ Sbjct: 213 NQIATQDW------------------------------NGKLNLMRSVRPLDDQLTAFRF 242 Query: 281 VMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 V P +P+ D+P + +++ L G ++G IV LR A Sbjct: 243 VKTPSVPLTPDTPNPTLWMMIGALAGLLLGMVIVSTMGLLRKKPA 287 >UniRef50_C7M6P7 Lipopolysaccharide biosynthesis protein n=2 Tax=Capnocytophaga RepID=C7M6P7_CAPOD Length = 355 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 56/354 (15%), Positives = 125/354 (35%), Gaps = 50/354 (14%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ- 64 NN + ++IDL+ L+ +LWR K +I + ++ + + I + +++T+T I+ Sbjct: 3 NNHHNTIREEDEIDLLQLINKLWRAKKSITVFTLIFMVIGILVALFSAKEYTATTIMVPQ 62 Query: 65 -------PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEERE 117 +G +A +N+ A +I L + Sbjct: 63 ATDSKSTGGLGGLAAMA-GINLGGNNADAIPLTTYSKIIESVPFKKKLAQTKLTFSDISN 121 Query: 118 KLTIEPSVKNQQLPLTV-----SYVGQTAEGAQMKLAQYIQQVDDKVNQE--LEKDLKDN 170 +T E KN P + + +E + Q + +E + + +N Sbjct: 122 PITYEQYCKNYAKPSILGSVMSIFRSNPSEPSIKV--QDTTHITSISKEERAILNSIDNN 179 Query: 171 IALGRKNLQ----------DSLRTQEVVAQEQKDLRIRQIQEALQYANQA---------- 210 I L + ++L +++ Q+ L+ + LQ A + Sbjct: 180 IKLNLNEKEGYITLSYAMPEALPAAQMLQSAQQLLQETVTEFKLQKAKEEFDFVQQRFIE 239 Query: 211 -----QVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDI 265 + + + +D +D L L+ ++ E N Y L+ Sbjct: 240 AEKDFKAKQYAVAGF-QDRNRDLFSNLPQTRLQ-QLQAEYNLAF----NVYTELAKQLET 293 Query: 266 ESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 + +K+ + D + + +P R PK+ + + + +G ++G G V ++ Sbjct: 294 KRIKMKE-DQPIFTIIEPVSVPNERSKPKRMMIIAIWTFVGLIIGIGNVFLKDF 346 >UniRef50_A8FXK9 Chain length determinant family protein n=1 Tax=Shewanella sediminis HAW-EB3 RepID=A8FXK9_SHESH Length = 317 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 45/330 (13%), Positives = 108/330 (32%), Gaps = 36/330 (10%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 ++ + N + E + + LWR K II+ + + Y + ++AI Sbjct: 2 SSEIERLNSNTEVVSFKAMFAMLWRTKWFIIVFTGLISVATVIYAINVPNVYRASAIYLP 61 Query: 65 PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSS--AFSALAETLDNQEEREKLTIE 122 G G A+ +L + ++ F L ++ LT+ Sbjct: 62 KSSDDAGGLAQLAGQFGGLASMAGINLGGGGADKTAAAIEFMKSRAFLQAFIDKRDLTVP 121 Query: 123 PSVKN---QQLPLTVSYVGQTAEGAQMKLAQYIQ-QVDDKVNQELEKDLKDNIALGRKNL 178 Q+ + E Q+ + E + I++ ++ Sbjct: 122 ILAAKGWEQESGNLLIDPELYDESKQVWVRAAPPGFQVTPTAWEAYDLFRKMISISEQS- 180 Query: 179 QDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE-------DITQDTLFL 231 ++ ++I + A A+ ++ + TQ ++ Sbjct: 181 ------------KKGFVKIELEYYSPDLA--AKWLGWLVEDLNAYWKTREHEQTQKSIAF 226 Query: 232 LGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRD 291 L +A + + R + + QT+ ++ + D + + ++P ++ Sbjct: 227 LTKQAENAQLSEL--RSVFYQLIAEQTK------NTVLAEVSDEVLFETIAPIVVPEQKS 278 Query: 292 SPKKAITLILAVLLGGMVGAGIVLGRNALR 321 +P +A+ +L LGG++ + L A+R Sbjct: 279 APSRALLCLLGFALGGVLSCILGLFYCAIR 308 >UniRef50_A6VA35 Chain length determinant protein n=7 Tax=Pseudomonas aeruginosa RepID=A6VA35_PSEA7 Length = 455 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 64/383 (16%), Positives = 124/383 (32%), Gaps = 101/383 (26%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 + ++DL+ L QLW K + V +A+A+ YL + + + ++ + Sbjct: 22 ERPEVDLVQLFRQLWGAKWLVASITGVGLAVAVLYLLLVVPTYEVSVLLRPIQTKALEAV 81 Query: 74 N--NAMNVIYGQAAPKVSDLQETLIGRFSSA------------------------FSALA 107 N + + +A +V+ GRF F+ A Sbjct: 82 NARDIYALTPREALDRVASELSAYSGRFEYFQAHPERFQQLNKDNGLSAEQAFWKFNLSA 141 Query: 108 ETLDNQEEREKLTIEP---------------SVKNQQLPLTV-SYVGQTAEGAQMKLAQY 151 ++ + ++ P + N + T+ S Q E Q ++ Sbjct: 142 FSMKQADLQKDPQATPFVQIFMQYPKGMDGAGILNDMVSRTIDSERRQILEDLQARVDSR 201 Query: 152 IQQVDD-----KVNQELEKD-----LKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQ 201 +Q + + + + K L + + R L+D L+ + +D RI+Q+ Sbjct: 202 LQFLAQDIEGKRASYQASKQGRIARLLEADNIRRAGLEDELKALRGRLKMVRDSRIQQLN 261 Query: 202 EALQYANQAQVTKPQIQQ---------------TGEDITQDTLFLLGSEALESMIKHEAT 246 EA+Q + + + KP T + Q L+ +G +AL + Sbjct: 262 EAIQISTRLGIVKPTTPGALGEVGLDGSRSVFRTEVNNQQIPLYFMGVDALTAERDTLLK 321 Query: 247 R--PLVFSPNYYQTRQNLLDIES--------------------------------LKVDD 272 R P +Q L +E+ LKV D Sbjct: 322 RKGDDFTEPRVAAIQQELKQLENNREVQYLQARQGEERFFDDIEKLRGEQARLQTLKVGD 381 Query: 273 LDIHAYRYVMKPMLPIRRDSPKK 295 L I R + +P++ P+K Sbjct: 382 LKIELVRVDQRAAMPLQPIKPRK 404 >UniRef50_B5JNI6 Chain length determinant protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNI6_9BACT Length = 333 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 37/327 (11%), Positives = 105/327 (32%), Gaps = 68/327 (20%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG------- 68 +++ LIDL +W+ K ++ + + Y E + + A + Sbjct: 22 DELSLIDLWNIVWKRKWPWLVFGPLFGIFGVFYALNQTEIYRAEATLAPNSEEKSGGGLS 81 Query: 69 ----QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDN------QEEREK 118 Q G + + G + + +F + F +L EE + Sbjct: 82 ALAGQFGGLASMAGLNLGGGGSTETAIATLKSRQFLTPFITTETSLKALFPKEWDEETKA 141 Query: 119 LTIEPSVKNQQLPLT-----VSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIAL 173 T+ +N T + + + ++ K + + + + +L + + + Sbjct: 142 WTVAKERRNDSNTPTDLEAYEFFTKNSLKVSEDKKSGLVTLAVELPDPKLAAEWTNQLVG 201 Query: 174 GRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLG 233 + A+ + + + + + L ++ + Sbjct: 202 KLNSHLRQ------QAKIESERNLAYLNDQLSDTRVLEIRE------------------- 236 Query: 234 SEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSP 293 AL +I+++ ++ + + +A++ + ++P R P Sbjct: 237 --ALYGLIENQTK-------------------NAMLANAKEEYAFKVIDPAVVPELRVRP 275 Query: 294 KKAITLILAVLLGGMVGAGIVLGRNAL 320 K+++ +I + +LGG G + + + Sbjct: 276 KRSLIVIASGMLGGFFGLFLCFVFHFV 302 >UniRef50_C4KCI7 Lipopolysaccharide biosynthesis protein n=1 Tax=Thauera sp. MZ1T RepID=C4KCI7_THASP Length = 407 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 53/362 (14%), Positives = 121/362 (33%), Gaps = 58/362 (16%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 D ++I L+DL + L + K I+ ++ AL +G + +T+T I P Q Sbjct: 23 DDDEISLLDLAIVLAKFKKLILGLPVLVGALTVGATLLMTPIFTATTAILPPQQSQSTAS 82 Query: 74 NNAMNVIYGQAAPKVSDLQETLIGRF----------------SSAFSALAETLDNQEERE 117 + + + + + + + Sbjct: 83 ALLGQLGGLAGIAGAAAGIKNPSDLYVGMLKSRTVADAMIARFDLVNYYEDEFAEDARKS 142 Query: 118 KLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVD---------DKVNQELE---- 164 + + +T+S + E A Y+++++ + + L Sbjct: 143 LENVSSFTAGKDGIITISVDDKDPELAAKMANAYVEELNRLTEVLAVTEASQKRLFFERQ 202 Query: 165 -KDLKDNIALGRKNLQDSLR-------------TQEVVAQEQKDLRIRQIQEALQYANQA 210 D +D + + ++ EV A+ + + +++++ A A Sbjct: 203 MVDARDRLVAAEIEARSAMERGGLASIDAQGQAMIEVTARLRGQISVKEVEIGAMRAFAA 262 Query: 211 QVTKPQI---QQTGEDITQDTLFLLGSEALE----------SMIKHEATRPLVFSPNYYQ 257 + P++ QQ + + + G+ AL + + R + + YQ Sbjct: 263 E-ENPRLKAAQQELLALQTELARIEGASALRDTQVGGESSAAATNLQLLRNVKYYETLYQ 321 Query: 258 TRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGR 317 ++ ++ + D + + + P R+ PK+A+ +ILAVL G V I + Sbjct: 322 MLAQQFELAKIE-EAKDSALIQVLDTAIPPERKSKPKRALIVILAVLAAGFVAVLIAFMK 380 Query: 318 NA 319 A Sbjct: 381 EA 382 >UniRef50_C1XU43 Chain length determinant protein n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XU43_9DEIN Length = 323 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 47/326 (14%), Positives = 109/326 (33%), Gaps = 27/326 (8%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV 67 ++ ++I L DL + L R I+ + A + + + + S A ++ Sbjct: 1 MNEAAQPQDEISLRDLYLVLKRNARMILAVTLGAALVTFAISMILPKTYRSQANLSLSVT 60 Query: 68 GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKN 127 Q ++ P +S L + R + A + + N R + + + Sbjct: 61 SQ-----QQLSGQILANLPSLSGLAGSFQDRLETRELAQSLGVANPASRYQAKFD----D 111 Query: 128 QQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEV 187 + +S G + E A ++ +K+ L+ +A + +L Q Sbjct: 112 KTGIWRLSAKGSSPEEA--------RRATEKLLATARDFLESKLAQTVNSNLAALLAQAR 163 Query: 188 VAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATR 247 + E + +++I++AL + E + L + + +K + Sbjct: 164 IDAESAQIGLQEIKKALANTPPTVGADAAVASALESQGVNPLVARATSPAYASLKLQEAN 223 Query: 248 PLVFSPNYYQTRQNLLDIESLKVDDLDIHA-------YRYVMKPMLPIRRDSPKKAITLI 300 Q + + L + +I + ++ P P+R SP+ + Sbjct: 224 ---LRSQLAQAQARIETYSRLARNPQEIRTLVGQALQIQPLVAPSEPLRPVSPRPLLYAA 280 Query: 301 LAVLLGGMVGAGIVLGRNALRNYNAK 326 +A +LG ++ AL + Sbjct: 281 IAAVLGLILSVFWAFLAEALAPRRPE 306 >UniRef50_C5V7I4 Lipopolysaccharide biosynthesis protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7I4_9PROT Length = 343 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 58/335 (17%), Positives = 114/335 (34%), Gaps = 42/335 (12%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 N Q ++I+L+DLL+ + + II + A LA+ Y + +T+ ++ Sbjct: 6 NQTAVQQAVQDDEINLMDLLLVIAKHNRFIIKLTLGAAVLAVIYALMQPNIYTAKTVLMP 65 Query: 65 PDV----GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFS--ALAETLDNQEEREK 118 P + A V + + G S AL + E + Sbjct: 66 PQQPSSSTSVLLGQLGGLAGMAGGALGVKNPSDLYAGMLKSHMIEDALIKRFKLMELYQA 125 Query: 119 LTIEP----------SVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLK 168 T+EP + +TV Y + + A Y++++D V + ++ Sbjct: 126 KTMEPVRAALEGSTVVAAGKDGFITVEYSDKDPKLAAAIANAYVEELDSLVRTQAAREAL 185 Query: 169 DNIALGRKNLQDSL----RTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDI 224 K L D R + + Q R+ Q+ A A P+ + I Sbjct: 186 GRKQFYEKQLADVRAGLGRAELEMKVFQDQNRVFQLGGGAGVALGASGGIPKAELEYVRI 245 Query: 225 TQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKP 284 +D + L +M + + + + N + + K Sbjct: 246 ARDVKYN--EMLLAAMAQQVTSATIDAAKNLPTLQ--------------------VLDKA 283 Query: 285 MLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 ++P ++ PK+A+ ++LA +L +G R A Sbjct: 284 LVPEKKSKPKRAMIVMLATILAFFIGIIWAFVREA 318 >UniRef50_A4SDR7 Lipopolysaccharide biosynthesis protein n=2 Tax=Chlorobium/Pelodictyon group RepID=A4SDR7_PROVI Length = 343 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 60/330 (18%), Positives = 116/330 (35%), Gaps = 44/330 (13%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 Q+ ++I L+DL + L + K II + L Y +T+ I P Sbjct: 16 QDGYEDEISLLDLAITLAKYKKLIIGAPFAIAVLVSIYTLFQPNIYTADTRILPPQQQSN 75 Query: 71 AG------YNNAMNVIYGQAAPKVSD----------LQETLIGRFSSAFSALAETL-DNQ 113 A +D LQ ++I RF AETL D + Sbjct: 76 ASAMLSQLGALGALGGGSLGIKNPNDTYVAMLESRPLQNSMIKRFKLQAVYEAETLADAR 135 Query: 114 EEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIAL 173 + E +T + K+ +TVS Q A YI D++ + ++ + + Sbjct: 136 KTLEGVTTVTTGKDG--LITVSVDDQDPIRAATLANGYI----DELQKLMQVFAVTDASQ 189 Query: 174 GRKNLQDSLRTQEVVAQEQKDLRIRQIQE---ALQYANQAQVTKPQIQQTGEDITQDTLF 230 R + L + + ++ ++Q+Q+ LQ A QA Q+ TG+ + Sbjct: 190 RRIFFEKQLHLAKEELADA-EVSLKQLQQRTGVLQLAAQAG----QLMGTGQAPDIALRY 244 Query: 231 LLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRR 290 + R + ++ Y+ ++ L + + K ++P + Sbjct: 245 IR------------KVRDMKYAETLYEILAKQYEMAKLDESKES-TVIQVLEKAVVPQDK 291 Query: 291 DSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 P+++ +++A L G + AL Sbjct: 292 SKPQRSKIVLIAALATGFLAILYAFIAEAL 321 >UniRef50_Q6AS85 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AS85_DESPS Length = 360 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 65/368 (17%), Positives = 116/368 (31%), Gaps = 87/368 (23%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD-- 66 S N+ ++IDL+ LLV +W+ + I +V V ALA+ L + TA I P Sbjct: 25 SVSNYRDDEIDLLSLLVDVWQQRWFIGGAVSVIGALALVLLLALPSTYEVTAEIEIPSAV 84 Query: 67 --------VGQIAGYNNAMNVIYGQA-------------APKVSDLQETLIGRFSSAFSA 105 QI N NV P V RF+ + Sbjct: 85 SSPLLPALYQQIDTLENLENVPSEMIGEDGNMELPFVLRTPSVGSNPLLAQHRFNRVYQL 144 Query: 106 L------------------------AETLDNQEEREKLTIEPSVKNQQLPLT-----VSY 136 L AE + + P K Q +S Sbjct: 145 LKSRDMWLAYQKKTGKTFSAEQGLQAELGRFKGALSVTVLAPQGKKNQSITNPTVLGISL 204 Query: 137 VGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLR 196 G E +L ++Q V+++V E+ + + R ++++ + ++ Q Sbjct: 205 RGGGDEKLARELEGFLQFVNERVVTEVSGGQQIILKGYRDSVENQISLIQLQNQV----- 259 Query: 197 IRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYY 256 P T + + + A L + Sbjct: 260 -----------------GPMKDSTAGKGQDAGVASMPATA-----------GLAYG--LT 289 Query: 257 QTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLG 316 Q + +L +++ D + ++Y+ P+ + PKKA+ L +L G + + L Sbjct: 290 QLQSSLQQLQNFSPDLAGLKGFQYLSHPLGEGEKIKPKKALILAATLLFAGFLAIVLALL 349 Query: 317 RNALRNYN 324 R AL+ Sbjct: 350 RTALQRRK 357 >UniRef50_B8E0I3 Lipopolysaccharide biosynthesis protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0I3_DICTD Length = 463 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 41/294 (13%), Positives = 107/294 (36%), Gaps = 23/294 (7%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQ----IA 71 ++I L +L +W+ K+ II IV I +A+ Y +A + + + +I P ++ Sbjct: 9 DEISLAELFYIIWKRKILIITLFIVFITVALIYSLLAPKIYEAKTVILLPQQSGSTSALS 68 Query: 72 GYNNAMNVIYGQAAPKVSDLQETLIGRFSSA----FSAL-------AETLDNQEEREKLT 120 ++ + G I + SA F L A+ ++ E+ + Sbjct: 69 ALAQSLPISLGIPLSSTPSANMVAILKSRSAAEYVFKKLKLEGYFKAKNYEDALEQLMKS 128 Query: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDK-------VNQELEKDLKDNIAL 173 I+ + +++ +T++ + + A Y++ + + + ++ L+ I Sbjct: 129 IKVTTNDKENTITLTAEAKDPKLAADIANTYVEALSNINASLGVYTAKRTKEFLEKQIER 188 Query: 174 GRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLG 233 +K+L+ + + ++ + +A+ A ++ Q+ + ++ L Sbjct: 189 VKKDLEQAENRLKEFQEKNLIFDVNDEAKAVVDALAKLESEKQMTSITLKVEKENFENL- 247 Query: 234 SEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLP 287 AL + + + L + + L + ++ P P Sbjct: 248 KRALINQQRIQQKDLLAITSLTATSTVLSDLRNKLISQESELALLSVDYGPEHP 301 >UniRef50_C5R191 Putative uncharacterized protein (Fragment) n=2 Tax=Bacteria RepID=C5R191_STRPN Length = 80 Score = 64.8 bits (156), Expect = 5e-09, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 29/51 (56%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD 66 ++D+ L LW GK+ II + +A+ Y A+++W+STAI +P Sbjct: 30 NELDIRGLFRTLWAGKLWIIGMGLAFALIALAYTFFARQEWSSTAITDRPT 80 >UniRef50_C1TR41 Uncharacterized protein involved in exopolysaccharide biosynthesis n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TR41_9BACT Length = 435 Score = 64.0 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 53/387 (13%), Positives = 118/387 (30%), Gaps = 91/387 (23%) Query: 29 RGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD--------VGQIAGYNNAMNVI 80 R K II + + LAI Y +A + + + P + Q+ + A ++ Sbjct: 29 RRKWFIIKTTFIFAVLAIAYALLATPIYRAETQVIPPQSGSGAMAALAQMGVPDFAAGML 88 Query: 81 YGQAAPKVS-------DLQETLIGRF-----------------SSAFSALAETL----DN 112 + + +I +F + L E L ++ Sbjct: 89 GVTTPSDTLVAIVKSRPVLDKVIDKFGLMDREPEPGPLPVEAIKEGINTLKEKLLPSKES 148 Query: 113 QEEREKLTIEPSV------------KNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDD--- 157 E EK + + +T+S + + A +Y+ Q+ + Sbjct: 149 ASEEEKPKFRSDIRRGLANATSATADTKSGIITISVSDTSPDLAAEIANEYVAQLQELMQ 208 Query: 158 -----KVNQ-------ELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQI--QEA 203 + +Q +++ + + R + +RT + EQ + + A Sbjct: 209 SLAFSQASQQRLFLEDQVKDAQYNLLQAERNLSEYQIRTGILDVGEQTSAVMEGLIKLRA 268 Query: 204 LQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTR---- 259 A + ++ Q T + L +L+ +K P+ + Sbjct: 269 EVTAKEVELRSTQTFATANNPKVKRLQS-ELASLKEQLKRMEASTGSTMPSDISIKDLPD 327 Query: 260 ---QNLLDIESLKVDDLDI------------------HAYRYVMKPMLPIRRDSPKKAIT 298 + L + +K ++ + + + P RR PK+ + Sbjct: 328 AGLEYLRLMRDMKFNETLYGMLLKQYESARISEAQEPSVVQVLAQAEPPERRSKPKRKLI 387 Query: 299 LILAVLLGGMVGAGIVLGRNALRNYNA 325 ++LA +LGG +G + N + Sbjct: 388 VVLATVLGGFIGVFGAFLKEFAANAQS 414 >UniRef50_Q5P6W3 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P6W3_AZOSE Length = 396 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 31/216 (14%), Positives = 77/216 (35%), Gaps = 20/216 (9%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 +++ + H+ +IDL L+ LW+ K+ I+ + ++ + +G ++ K+ + + Sbjct: 1 MQSTPNNPPAHEDNEIDLRQLVSVLWKQKLLIVGAGVLCAGVGVGASLLST-KYVAEGLF 59 Query: 63 TQPDVG---------------QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALA 107 P V ++ Y + + + L E + A Sbjct: 60 LTPGVSATNYKRFVSVFSNGPRLQQYLQDTGALATRDGALLFGLAENQDRLVETLRPEFA 119 Query: 108 ETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGA--QMKLAQYIQQVDDKVNQELEK 165 T +Q+ E + + + + + G LA+Y++ +VN E Sbjct: 120 FTDKDQKAFGVKVAEDDEPGAMIGVRIQFSHKEPTGGTPVTLLAEYVRDTVIRVNFEKAL 179 Query: 166 DLK-DNIALGRKNLQD-SLRTQEVVAQEQKDLRIRQ 199 + + + L++ L + QE++ + Sbjct: 180 LARCADFRTREQELRNAQLSNDFAITQEERRAATLR 215 >UniRef50_D1B3W3 Lipopolysaccharide biosynthesis protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B3W3_SULD5 Length = 297 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 105/309 (33%), Gaps = 30/309 (9%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 ++IDL +L + R K I++ + A Y + + AI+ +I + N Sbjct: 12 DEIDLRELFRTIIRYKKFIVVITVCVTLFAAVYSVLKTPIYEVKAIL------EIGFFTN 65 Query: 76 AMNVIYGQAAPKVSDLQ--ETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLT 133 + E+ + +E L+ +K + Sbjct: 66 TNTNTNTNTNTNTNTNTFLESPANLIQRLELNYIDNQKGSKETSFLSKALLIKGTNNLVE 125 Query: 134 VSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQK 193 + Q+ E KL + +V K + +E LK + + N+Q ++ Sbjct: 126 LVIEAQSNEEGLKKLNAIVDEVKLKHQKVIEAYLKQ-MHIKISNIQAQ----------KE 174 Query: 194 DLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSP 253 +L + + + + +N+ + ++ ++ + +++ Sbjct: 175 ELSLEKEKLSNFISNKTLMVDQILKDNPAVAAIYSI----------ELNNKSLELTELKN 224 Query: 254 NYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGI 313 Y L D+E L + ++ ++ + PKKA+ ++++ + G ++ + Sbjct: 225 KIYTLNNQLSDLE-LLIAPSNVKETSFLGNITKSDKPVKPKKALIVLVSSITGFILSIFM 283 Query: 314 VLGRNALRN 322 V R+ Sbjct: 284 VFLFEMFRS 292 >UniRef50_Q2LWK4 Hypothetical membrane protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWK4_SYNAS Length = 342 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 48/331 (14%), Positives = 113/331 (34%), Gaps = 43/331 (12%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 + ++I+L+DL +W+ + I V+ A+ L + + A+I Sbjct: 8 YGYPPNGLEEDEINLLDLWRVIWKRRRFIGALVVAAVFLTAAASLFMTNVYQAKAVIVPV 67 Query: 66 DVGQ------IAGYNNAMNVIYGQAAP------------KVSDLQETLIGRFSSAFSALA 107 ++ + + G A P K + L+E ++ R+ Sbjct: 68 TAKDGGGGGTLSALASQFGGLPGIALPGSASATEIVSLLKSNVLREKIVERYRLMPVLFY 127 Query: 108 ETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQ-TAEGAQMKLAQYIQQVDDKVNQELEKD 166 E D+ ++ E + L + A+ + +E Sbjct: 128 EQWDS--GKKDWKREEGINLNPLGWLSNMAAAVQPTDAKAV---------SRQGEEGIPL 176 Query: 167 LKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQ 226 L D + L ++ + +E D ++ A++ ++ + +T Sbjct: 177 LWDALRLLDDMVKINHNIKEQTITLTVDYEDPEL--------AAKMAGYFLETLTDHMTA 228 Query: 227 DT--LFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKP 284 + + L LE+ + + PL+ Y Q L +V + A++ + P Sbjct: 229 EAKRVALTNRAYLEAQL-AKTADPLIRQKIYNLIAQQLETAMMTEVKEN--FAFKVIDPP 285 Query: 285 MLPIRRDSPKKAITLILAVLLGGMVGAGIVL 315 +P ++ PK+A+ ++L+ ++ +G Sbjct: 286 RVPDKKIKPKRALMVMLSFVVALFLGVFSAF 316 >UniRef50_Q2SJH6 Uncharacterized protein involved in exopolysaccharide biosynthesis n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SJH6_HAHCH Length = 317 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 47/333 (14%), Positives = 105/333 (31%), Gaps = 55/333 (16%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 + + ++ L D+L+ LW+GK II ++++ A+ + S+ ++ Q Sbjct: 10 ETYKDNEVSLRDILLTLWKGKWIIISLTVLSLVAALVMAKNQPNIYKSSILLVPAQEEQK 69 Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQL 130 G G A+ ++ +AE L + +E LT +K++Q+ Sbjct: 70 GGLAGIAGQFGGLASIAGINIGGGKSD--------VAEALAILKSQEFLTR--FLKDEQI 119 Query: 131 PLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQ 190 ++ E Q E + ++ K + + Sbjct: 120 KSSLFIENWNKESGQW---------------EKKDSFLGSLWGRLKGDSNPKDPSSLEPS 164 Query: 191 EQKDLRIRQIQEALQYANQAQVTKPQIQQ--TGEDITQDTL-----FLLGSEALESMIKH 243 QK L + V++ T + + L + L S ++ Sbjct: 165 WQK-------TYQLFISKHLSVSEDPKSGLVTVSVMAYEPEDAAHWAALLIDKLNSHVRL 217 Query: 244 EATRPLVFSPNYYQTRQNLLDIESLK----------------VDDLDIHAYRYVMKPMLP 287 + S Y + L ++ D + +R + +P Sbjct: 218 QKKAEAERSIEYLNNQIKLTLNAEMQRVLYQLVEAQAKVAMLASVRDDYVFRVIDPAFIP 277 Query: 288 IRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 ++ P + +I+ + G + G +VL + Sbjct: 278 EQKYKPNRFQMVIVGGIAGCVFGVLLVLFIQII 310 >UniRef50_C0QSZ0 Chain length determinant protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QSZ0_PERMH Length = 288 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 45/312 (14%), Positives = 108/312 (34%), Gaps = 54/312 (17%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD-VGQIAGYN 74 ++IDL +L + L + ++ + I L+ YL + K + + I+ P + Sbjct: 25 DEIDLYELWLTLKKRYKLVLSVTVFFILLSAVYLFLTKPVYRAEFIVKLPQGLTSPQETK 84 Query: 75 NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTV 134 N ++ + K L+G + ++ E R+ + + + P + Sbjct: 85 NIIDNLENLRKEKRYMELSNLLGISQEKIMDI-DSFSASEIRKNKNLIKVILDVYDPNII 143 Query: 135 SYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKD 194 S + V + + +K+ I + ++ L+ S+ +E + Sbjct: 144 SKLS----------------VSILEHLNNNRFVKERIEIRKETLRFSIEETNEKIKEIES 187 Query: 195 LRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPN 254 ++ R + + + +I+ G + +L +L+ +K+ Sbjct: 188 IKDRILND---------LKNGRIKDLGFNPVDMDRTVL---SLKEKVKNLEN-------- 227 Query: 255 YYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIV 314 L + Y + P++P + PKKA+ L +A + G +G + Sbjct: 228 ------QLKLLRG----------YEIAVDPVVPEKPSKPKKALILAVASVSGLFLGVFLA 271 Query: 315 LGRNALRNYNAK 326 + N + Sbjct: 272 FFAEWIENARKR 283 >UniRef50_A7AKH2 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AKH2_9PORP Length = 364 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 50/362 (13%), Positives = 114/362 (31%), Gaps = 55/362 (15%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 ++ NN + + +IDLI L LW+ + I +A + +++T+T + Sbjct: 1 MDKNNHTP-SSPQSEIDLIALSGYLWKKRRFFIKCCGIATVAGLIIAFSIPKEFTTTVKL 59 Query: 63 TQ------PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER 116 + + G + G A+ + + S L + ++ Sbjct: 60 APETTDATSKMSNLGGLAAMAGIDLGSASGQDALSPNLYPDIVHSTPFLLELFPEKVTDK 119 Query: 117 EK------------------LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDK 158 EK +I + + S+ E Sbjct: 120 EKKYTTTLYDYIAGHQRFAWWSILMKAPLKGIAALRSFFSGNEENDGDL----NPFQLTH 175 Query: 159 VNQELEKDLKDNIAL------GRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQV 212 +++ K+L+ I + L S++ + A + I+ Y Q Sbjct: 176 KQEDVLKNLRQRITVYVDKKTQVVTLGVSMQDPLISADVAHSIVIKLQTYITHYRTQKAK 235 Query: 213 TKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNL---------- 262 + + ++ + +A ++ E + S +Y ++ L Sbjct: 236 KDLEFTEKVLKESRSAYY----KAQQAYAAFEDGNKNIISASYRTEQERLRNEMTLTFNV 291 Query: 263 --LDIESLKVDDLDIH----AYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLG 316 + L+ D L + Y + +P++ SPKK + L+ + L + G G ++ Sbjct: 292 YNTLAQKLEQDKLRVQEQTPVYTIIEPATVPLKASSPKKLLILVAFIFLAFIGGCGYLII 351 Query: 317 RN 318 + Sbjct: 352 KE 353 >UniRef50_A4EGG2 Succinoglycan biosynthesis transport protein exoP n=3 Tax=Rhodobacteraceae RepID=A4EGG2_9RHOB Length = 731 Score = 62.1 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 44/263 (16%), Positives = 96/263 (36%), Gaps = 18/263 (6%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLA-VAKEKWTSTAII-TQPDVGQ 69 + ++IDL L+ LWRGK+ II+S ++A+ Y VA +T+TA + + Q Sbjct: 39 PSEDDEIDLGALIGTLWRGKLWIILSAVIALVAGGYYAFGVATPVYTTTASVALESRQEQ 98 Query: 70 IAGYNNAMNVIYGQAAPKVSDLQ----ETLIGRFSSAFSALAETLDNQEEREKLTIEPSV 125 I ++ M+ + G ++++ L+G+ + +A+ N ++ Sbjct: 99 IVDIDSVMSGLSGDQITINTEVEVLRSRRLMGKLVDDLNLVADPEFNSTLTDETWYSLGA 158 Query: 126 KNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQ 185 + + A L ++ + + + + I++ Sbjct: 159 MADAIRENIFGQ-----PAGNLLQS-----NEAIRDSVVDAVLEQISVSNVRQSYVFNIS 208 Query: 186 EVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQD-TLFLLGSEALESMIKHE 244 V K + L +Q + + + E +T + EA E+ +K Sbjct: 209 VVTENPAKSAAMANRLAELYVEDQIVLKFEKTAEATEWLTDRVAELQIELEASENQLKEF 268 Query: 245 ATRPLVFSPN-YYQTRQNLLDIE 266 ++ + SP + L D+ Sbjct: 269 SSNTDLISPEGLVGLNRQLKDLR 291 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 44/87 (50%), Gaps = 6/87 (6%) Query: 236 ALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKK 295 AL+ + + L++ + ++ + + L+ + I +Y +LP +P+K Sbjct: 393 ALQQLQRETEASRLIYEFFLGRLKETSVQ-QGLQQAESRILSY-----AVLPSAPSAPRK 446 Query: 296 AITLILAVLLGGMVGAGIVLGRNALRN 322 A+ L +++LG +VG G+VL R +N Sbjct: 447 AVILTFSMILGLIVGTGLVLLRELSQN 473 >UniRef50_A3SUA0 Putative uncharacterized protein n=3 Tax=Rhodobacteraceae RepID=A3SUA0_9RHOB Length = 712 Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 55/302 (18%), Positives = 112/302 (37%), Gaps = 28/302 (9%) Query: 1 MRVENNNVSG-QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLA-VAKEKWTS 58 M +N SG ++ D + IDL L+ LWRGK+ I ++ + LA Y VA + S Sbjct: 4 MNQSQSNFSGPRDEDDDTIDLGALIGTLWRGKLIIAAVTLIFMLLAGYYAYGVAVPTYRS 63 Query: 59 TAIITQPDVGQ-IAGYNNAMNVIYGQAAPKVSDLQ----ETLIGRFSSAFSALAETLDNQ 113 TA++ I + G + ++++ L G+ + +A+ Sbjct: 64 TAVVVLDTKEDSIVDLQAVVGGFSGDSTEINTEIEVLKSRGLAGKVVDRLNLIAD--PEF 121 Query: 114 EEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKL----------AQYIQQVD-DKVNQE 162 R + S + ++ + E + +L + +V + Q Sbjct: 122 NGRLREPSMRSRVISGIRSLLTSSTPSPEVPETELHRAKVRDSVIQSLLNKVSVSNIRQS 181 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 L ++ K+ Q + E+ Q +++ ++A ++ + +V++ QI+ Sbjct: 182 LVFNVTAETESPVKSAQIANTIVELYILNQIEVKFEATEKATEWLSN-RVSELQIELENA 240 Query: 223 DITQDTLFLL-------GSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDI 275 + G +ALE IK R + + L D+E+ + D + Sbjct: 241 EKKVSEFTARTQLVSIEGLQALERQIKELRDRIDGAALTREGLQTRLADLEAAQTPDEKL 300 Query: 276 HA 277 A Sbjct: 301 DA 302 >UniRef50_B5YEW0 Lipopolysaccharide biosynthesis n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YEW0_DICT6 Length = 462 Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 112/301 (37%), Gaps = 22/301 (7%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV 67 ++ + ++I L +L +W+ ++ +II I+++ +A+ Y +A + + + +I P Sbjct: 1 MNEEKMYEDEISLAELFYIIWKRRVLVIILFIISVLIALVYSLLAPKIYEAKTVILIPQQ 60 Query: 68 GQIAGYNNAMNV-----IYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKL--- 119 + +A+ I ++ +++ L R ++ + LD+ + + Sbjct: 61 SGTSSTLSALLQNLPIPIGITSSTPSANMVAILKSRSAAEYVFKKLKLDDYFKAKTYEDA 120 Query: 120 ------TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDK-------VNQELEKD 166 +I+ + ++ +T++ + + A Y++ + + ++ Sbjct: 121 LKQLMDSIKVTTNEKENTITITAEAKDPKLAADIANTYVEALSTINASLGVYTAKRTKEF 180 Query: 167 LKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQ 226 L+ I +K+L + + ++ I +A+ A ++ Q+ +++ Sbjct: 181 LEKQIERVKKDLDQAENKLKEFQEKNLIFSIDDEAKAIVDALAKLESEKQMTAITLKVSK 240 Query: 227 DTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPML 286 D L + L + + + L + + L + ++ P Sbjct: 241 DNFENL-KKELVNQQRIQQKDLLAITSLTATSTVLSDLRNKLISQESELALLSIDYGPEH 299 Query: 287 P 287 P Sbjct: 300 P 300 >UniRef50_B8D183 Lipopolysaccharide biosynthesis protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D183_HALOH Length = 278 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 49/307 (15%), Positives = 103/307 (33%), Gaps = 47/307 (15%) Query: 18 IDLIDLLVQLWRGKMTII-ISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNA 76 IDL + + LW G+ +I + I + + + + + + A+I I Y+ Sbjct: 15 IDLREYIKVLWAGRWLVISLMGIAILLVGLASYFLINPVYETEAVIRLTSTDGI--YSRP 72 Query: 77 MNVIYGQAAPKVSDLQETLIGR--FSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTV 134 ++ +P + + R S A I+ + + L + Sbjct: 73 ASMARLIKSPSLLKGVMEGVNREYTMSELHTFASN----------NIKVNHVRETSMLEI 122 Query: 135 SYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKD 194 A L I + QE + ++ + T+ ++ + Sbjct: 123 KVSHTEPRLAFDILEGLIVKA-----QEKSDKYYRKVVNHKETYLQGIITEL----DEIN 173 Query: 195 LRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPN 254 RI ++E + K D+ ++L L S + + L + Sbjct: 174 QRIGSVEE--------GIEK----LNNRDLPAVEKYVL----LNS-LDNNLDSLLTYK-- 214 Query: 255 YYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIV 314 R + D L+ + L + + P +P SP + +++A +LG M+G IV Sbjct: 215 ----RGLVKDKNRLERELLTLRPLEVISSPYVPENPVSPNIKLNVVIAGILGLMMGVFIV 270 Query: 315 LGRNALR 321 R ++ Sbjct: 271 FFREFMK 277 >UniRef50_D0MHQ9 Capsular exopolysaccharide family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MHQ9_RHOM4 Length = 790 Score = 61.3 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 53/312 (16%), Positives = 108/312 (34%), Gaps = 51/312 (16%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII------ 62 S + D +I+ ++ + RGK I+++++V Y + S+AI+ Sbjct: 24 SDEKRDEGRINFAEIWHTIRRGKWIILLTMLVVAGAIGAYTYTLPPVYESSAIVFVDTRG 83 Query: 63 --TQP------DVGQIAGYNNAMNVIYG------QAAPKVSDLQETLIGRFSSAFSALAE 108 P + +N + ++ + A + ET + A AE Sbjct: 84 GGNAPVSVAAFTPIERRALSNELGILRNSAELATRVAEAIVATAETAGAKDRFPILAPAE 143 Query: 109 TLDNQEERE-----KLTIEPSVKNQQLPLTVSYVGQTAEGAQ----MKLAQYIQQVDDKV 159 RE + + S + Q + ++ T E A +Y + ++ Sbjct: 144 DGREPSIREIAFRLRERVRFSPLSDQDMIVITAESTTPEEAAVIANRYAEEYERFSRERS 203 Query: 160 NQEL---EKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQ 216 + L + ++ + R+ L++ R E A+ ++ +R+ E L A AQ+ Sbjct: 204 RESLAAAREFVEKQVEQRRQELEELERQWEAFARSRQVVRLGPQGERL-VAEVAQL---- 258 Query: 217 IQQTGEDITQDTLFLLGSE--ALE------SMIKHEATRPLVFSPNYYQTRQNLLDIESL 268 E F L E AL+ ++ LV S + + Sbjct: 259 -----EAQRDAARFQLEQEKSALQFIEQELQKLEPGLVDELVKSRQVSTLEAQIDALSK- 312 Query: 269 KVDDLDIHAYRY 280 K+ +L + A +Y Sbjct: 313 KIAELKVQAEQY 324 >UniRef50_B7J3H5 Chain length determinant family protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7J3H5_ACIF2 Length = 336 Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 119/333 (35%), Gaps = 67/333 (20%) Query: 1 MRVENNNVSGQNH--------DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVA 52 M +E+N +GQ ++I L DL + + K + +S +V + LA Y+++A Sbjct: 63 MPIEDNAGAGQPQRANAAYTISEDEISLRDLWEIIAKRKWLVFLSTVVCLGLAAAYVSLA 122 Query: 53 KEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDN 112 + STA++ + + GQ L L+ +++ T + Sbjct: 123 PTIYESTAVV-------------QIGKVAGQPVDNGLQLASRLMNQYTP-----VNTEEA 164 Query: 113 QEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIA 172 Q++ KL K LT+ G++ + AQ L IQ + Sbjct: 165 QKQMPKLYAVTPDKADGSILTLEARGRSPQEAQQYLQGVIQ----------------RLL 208 Query: 173 LGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLL 232 + + + + ++++ +L ++G+ T LL Sbjct: 209 AEDQQRYQQIVGTRQAQLTRLQAQYQRMRTSLN------------AKSGKGQADSTSTLL 256 Query: 233 GSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDS 292 + ++ R + + ++E+ + + + P + Sbjct: 257 --------LLEQSRRTDA----LTNIQAAIANMENALAPN-NTSPTVQTLSPRYDPIPVA 303 Query: 293 PKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 PK+ + L+LA L G M+G + L +NA R A Sbjct: 304 PKRGLILVLAGLGGLMLGVFLALLQNAFRKQQA 336 >UniRef50_C6JIE9 Predicted protein n=2 Tax=Fusobacterium RepID=C6JIE9_FUSVA Length = 318 Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 51/335 (15%), Positives = 111/335 (33%), Gaps = 46/335 (13%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTST--------- 59 + ++ ++ID+ +L+ + + K+ ++ I+ L +G + T Sbjct: 6 KREYYEEDEIDIYELVDIIIKRKILVLAIFIICSLLGLGVAFFVRSLKQDTLALKFNINY 65 Query: 60 AIITQPDVGQIAGYN-NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREK 118 A + +G N +NV K D L + E N R K Sbjct: 66 AKLENNYFFAKSGLNFTKINVDNILITNKYVDEFFKLEKLNELYLEKIKEGNRNDYSRSK 125 Query: 119 LT---IEPSVKNQQLPLTVSYVGQTAEGAQ-MKLAQYIQQVDDKVNQELEKDLKDN---I 171 ++ S TVS + + Q L +YI ++ +N +++ ++++ + Sbjct: 126 FLNDILKVSFNRDTNSYTVSVTMKKDQELQKDILNKYITIIESLINIQVDDEIENRYTFV 185 Query: 172 ALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFL 231 + ++ L E +E + + + + T P + Sbjct: 186 ESENRISREKLNKIENHIKEILEKEKNNLNKDTNIKEFIEYTNPILS------------- 232 Query: 232 LGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRD 291 ++ E L Y Q+ + L+ + LK DD + + Sbjct: 233 ---------VEREKVTSL-----YNQSSEMLIGLNGLKRDDEVKNIITLDSSIYEIETKS 278 Query: 292 SPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 K + L + +LLG ++G + NY + Sbjct: 279 KAK--MILAVGILLGIVLGIMSAFIAEFIDNYKKR 311 >UniRef50_B0K509 Lipopolysaccharide biosynthesis protein n=14 Tax=Thermoanaerobacterales RepID=B0K509_THEPX Length = 315 Score = 60.9 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 52/317 (16%), Positives = 105/317 (33%), Gaps = 16/317 (5%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVA-KEKWTSTAIIT----QPDVGQI 70 E+I L +L+ + + K TIII + A +A K + +T ++ P G Sbjct: 3 EEISLRELIEVILKYKKTIIIVTLTATLVAAVLSFFVIKPTYEATTTLSVTDVTPATGFF 62 Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQL 130 + P V + + + +E++T + N Sbjct: 63 GSNTTVILPGKDSNLPTVQSDSIEKDLSLLLSSLLKYPNMSVEAFKEEVTNPIVLMNTVK 122 Query: 131 PLTVSYVGQTAEGAQMKLA-QYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVA 189 L + T E + +++ I + E D K + Q+ Sbjct: 123 QLGLDPQKYTIENLKKQISVSVINNTNLITVTVKENDPKLAAKIADTIAQNFRTYIIERN 182 Query: 190 QEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPL 249 Q D I + + L ++ + + L+ + + + T Sbjct: 183 NRQTDKLIETLNK-LITLQNDKIKEVTAELNKIQTNSQDKLLIEQK--QKQLDLLKTTRD 239 Query: 250 VFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMV 309 + + +E +K +L + K ++P + +PKK++ +I+A +LG MV Sbjct: 240 I-------MLEKYNMLELVKESELGNQSILITSKALIPDKPVAPKKSLNIIIAFILGLMV 292 Query: 310 GAGIVLGRNALRNYNAK 326 IV +N K Sbjct: 293 SIFIVFFMEYWKNTEPK 309 >UniRef50_Q6AS84 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AS84_DESPS Length = 440 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 67/412 (16%), Positives = 128/412 (31%), Gaps = 108/412 (26%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWT---------STAIITQ 64 ++IDL+ LL +W + ++ V+ +A L V + S A++ Sbjct: 31 QNDEIDLLGLLHDIWDQRKFLMKIVLAVTLVAFLVLLVLPSTYQARMDIGQADSVALVVP 90 Query: 65 PDVGQ-----------IAGYNNAMN--VIYGQAAPKVSDLQETLIGRFSSAFSALAETLD 111 GQ ++ Y + + V + Q + + E L G + Sbjct: 91 VATGQDLLTRSYRFGIVSQYLKSFDSWVTFRQGNREGAFTDEELQGLQGEFVGLSVQVQA 150 Query: 112 NQEEREKLTIEPSVKNQQLPLTVSYV-GQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDN 170 + + K +PSV L +SY G + +L ++ VD K +E++++ Sbjct: 151 PKPIKGKAVSDPSV------LRISYRGGGDNTSVEQRLTGFVLFVDKKAAAYVEQEMEVV 204 Query: 171 IALGRKNLQDSL-------------RTQEVVAQEQKD--------------------LRI 197 I K + + + R ++AQ++KD +R+ Sbjct: 205 IQKAGKEINNKIGLLRHAASVDRGNRITRLLAQQKKDLEQVDMEISALKASVLRSRAVRL 264 Query: 198 RQIQEALQYANQAQVTKPQIQQTGEDITQD------------TLFLLGSEALESMIKHE- 244 ++QE A + P + ++LLG+E L I+ Sbjct: 265 TRLQENYAIAESLGIKLPTSMDNISERNVSNLKVMVTDQTAMPVYLLGTEVLAKRIQILR 324 Query: 245 ---------------------------------ATRPLVFSPNYYQTRQNLLDIESLKVD 271 + L +++ D Sbjct: 325 EISDKKLYAQQLQPLLEKRELLLGSSELNGLRARKDDDAYIAELPGLLSRLQQLDAYTDD 384 Query: 272 DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 +HA + + PKKA+ L VLL + + L R AL+ Sbjct: 385 LQGVHALQVYSAATGSGHKIKPKKALILATTVLLSCFLAVALALLRTALQRR 436 >UniRef50_C8PNG3 Chain length determinant protein n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PNG3_9SPIO Length = 337 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 51/346 (14%), Positives = 100/346 (28%), Gaps = 65/346 (18%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLA----------VAKEKWT 57 + + E+I L+DL LWR K II ++ Y + +T Sbjct: 1 MDDIKTESEEISLLDLAAVLWRWKQLIIGVTVLLSIAVFVYTFIGKKMDPEKSFMPDVYT 60 Query: 58 STAII---------TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAE 108 STA + + + A + I +S +A+ Sbjct: 61 STAFMRIQSGNSSASGALSSLLQQSGLGGLTGGIGAGGNTTQQLAFYIANSNSFLDTIAD 120 Query: 109 TLDNQEEREKLT--------------IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQ 154 L + E+ K+ I+ + + +++ AQ + Sbjct: 121 EL-HISEKYKIKKFIKTESRTIVKGLIKAKMDEKSGVFSLAATHIDPVFAQKAALLAVDY 179 Query: 155 VDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTK 214 + + + K+L+ S + + QE DL + A + Sbjct: 180 YEKRFAELGLDTKVQEKQNLEKSLEQSFNEIKRLEQEAGDLE-------NKIAQSGGIK- 231 Query: 215 PQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLD 274 G+ IK E + V Y Q + ++ + Sbjct: 232 ------------------GAALAMEQIKREIS---VQERVYGQLKAQYELLKVEMASET- 269 Query: 275 IHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 ++ + P +P ++ P +A I+A G + NAL Sbjct: 270 -PVFQILDMPEIPEKKSGPSRAKICIIAFGAGLFFSIFLAFLLNAL 314 >UniRef50_B9L6P5 Chain length determinant protein n=2 Tax=Nautiliaceae RepID=B9L6P5_NAUPA Length = 281 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 105/313 (33%), Gaps = 51/313 (16%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 + ++IDL +++ L + K I + + LA+ Y K + A I Q+ Sbjct: 18 EDDEIDLKQIIILLLKYKKFIFLFTFIITVLALIYAYTIKPIYEIKANI------QLGYI 71 Query: 74 NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLT 133 +N+ + + I + ++ D K+ + K + + L Sbjct: 72 SNSNSNSNSKIYLLEPQATMIYI------INKFDKSKDINASYPKVNVNIIKKTKDI-LN 124 Query: 134 VSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQK 193 +S + A+ L I+ V+ QE + +N+ ++ + + Sbjct: 125 ISVQNFSNTSAKEYL---IRIVNTLKKQE-----NSKLYAYIQNINSQIQILNNQIKTIQ 176 Query: 194 DLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSP 253 + I + ++L ++ I Q + D + Sbjct: 177 N-EIILLNKSLP-----KIKDTNIYQLTLNKIND-----------------------YQN 207 Query: 254 NYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGI 313 + + D+++ K+ ++I + PKK + +I+A + G ++ + Sbjct: 208 QITDIKLKIADLKT-KISPINITKTHIIGTIKQNPNPIKPKKKLIVIIAFITGLILSIFL 266 Query: 314 VLGRNALRNYNAK 326 V +++ + Sbjct: 267 VFFIEFVKSLKEQ 279 >UniRef50_C1F864 Chain length determinant protein domain protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F864_ACIC5 Length = 411 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 47/382 (12%), Positives = 120/382 (31%), Gaps = 64/382 (16%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ- 64 +V+ + ++I L+DLL L R K I ++ V + + I + +K+T+ + Sbjct: 8 THVTEKPQQEDEISLLDLLAALGRKKHIAIRTIAVMLVIGILLAFLLPKKFTAEVTLLPP 67 Query: 65 -----------------PDVGQIAGYNNAMNVIYGQ--AAPKVSDLQETLIGRFSSAFSA 105 V +AG + + A K +++ +I ++ Sbjct: 68 QQQSSLSSMLSSQLGGLGAVASLAGGGLGLKNPNDRYIAMFKSQTVEDAMIRKYGLMAEY 127 Query: 106 LAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYI-------QQVDDK 158 A+ + + + ++ + + +S ++ A Y+ + + Sbjct: 128 HAKLMSAARKAFEGHVKLDGTTKDGLIHISVTDRSPARAAELANGYVEQFRKLSEHLAIS 187 Query: 159 VNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEAL-----QYANQAQVT 213 + + +A + NL ++ ++ +++ EAL Q Q Sbjct: 188 EASQRRLFYQQQMAEAKSNLTNAEEALVKTEEKSGMIQVGSQAEALIQSGAQLRAQIAAK 247 Query: 214 KPQIQQTGEDITQDTLFLLGSE----ALESMIKHE------------------------- 244 + +IQ LL ++ L + + Sbjct: 248 EVEIQGLQAFAAPGNPNLLQAQQELAGLRAQLAKLAGSGGNTKDQLIVPQGKLPVAGLDY 307 Query: 245 --ATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILA 302 R + + + ++ + + + + V + P + +PK+ + L Sbjct: 308 LRKYRDVTYYQTIFNVLAQQYELAKID-EAKEGALIQVVDPAIPPDHKSAPKRLLILAGC 366 Query: 303 VLLGGMVGAGIVLGRNALRNYN 324 + G +G + L + N Sbjct: 367 LFAGIFLGVMLALLAEGWDHLN 388 >UniRef50_C9PY96 Chain length determinant protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PY96_9BACT Length = 350 Score = 59.4 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 47/350 (13%), Positives = 122/350 (34%), Gaps = 39/350 (11%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ------ 64 +N+ ++IDL+ + LW+ K +S VA + + + + I+ Sbjct: 2 ENNTKDKIDLVAITKTLWKNKRLFGLSCGVAFVIGAVVAFSIPKTYQTKVILAPEVSSGS 61 Query: 65 ---PDVGQIAGY--------NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQ 113 + IA ++++ IY + P++ L F+ ++L + Sbjct: 62 SMSESLSDIASMMGVNLGKGGSSVDAIYPEIYPQIIKSTPFLTSMFNVKVTSLDGKVKEM 121 Query: 114 EEREKLTIEPSV---KNQQLPLTVSYVGQTAEGAQMKLAQY-IQQVDDKVNQELEKDLKD 169 L + + + + + G ++K+ + + + + + ++E + Sbjct: 122 PLYNYLLSYQKMPWWDSILQGIIGLFSSKGLAGREVKVNNFHLTEEQEGILHQVENMITC 181 Query: 170 NIALGRKNLQDSLRTQEVVAQEQKDLRIR------QIQEALQYANQ--AQVTKPQIQQTG 221 N+ + S+ Q+ + ++ + A A K + Sbjct: 182 NVDKKTNIITISVTAQDALISASLADTVQTKMQQYVTNYRTKKARNDLAYSQKLFSEAKA 241 Query: 222 EDITQDTLFLLGSEA--------LESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDL 273 + I +F S+A ++ E + N Y + + KV + Sbjct: 242 QYIKAQQMFGHYSDANTDLILQSFKAKQD-ELENEMQLRYNIYNQTSQQMQMARAKVQER 300 Query: 274 DIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 A+ + +P+++D PK+ ++ + ++ + VL ++A +N Sbjct: 301 T-PAFTQIQPATVPLKKDGPKRMTIVLAFMFFAFVLTSIHVLIQDAKKNN 349 >UniRef50_D0MG08 Lipopolysaccharide biosynthesis protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MG08_RHOM4 Length = 403 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 43/353 (12%), Positives = 106/353 (30%), Gaps = 79/353 (22%) Query: 34 IIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAM---------------- 77 I VA A+ + + + +TA + P G ++ + + Sbjct: 28 IAGVTAVAALGAVIFSLLLPNWYRATARVLPPASGGLSPLASQLLGNLPGVLGGVLGGSN 87 Query: 78 NVIYGQAAPKVSD--LQETLIGRFS--SAFSALAETLDNQEEREKLT--IEPSVKNQQLP 131 Y + +S + E L+ RF+ S + E + E+L+ + V Sbjct: 88 TAGYERYLSILSSRTMYERLVDRFNLVSVYGLEDEEHPQEAAIEELSDNVSFDVDPDFEY 147 Query: 132 LTVSYVGQTAEGAQMKLA---QYIQQVDDKVNQELEKDLKDNIALGRKNLQDSL-RTQEV 187 L +S + + + A + + +++ + + + + + L + Sbjct: 148 LEISVLDRDPQRAAEMANFMVEELNRINADLMTQSARRYRQYVERRYHEALARLDSVLDA 207 Query: 188 VAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALES-------M 240 K + ++ A + E + + + EAL + Sbjct: 208 QEAFHKRYGLFDLE-----AQARGFLEYVATLRAEALQTEMQY----EALRAQFGDDNPQ 258 Query: 241 IKHEATRPLVFSPNYYQ--------------------------TRQNLLDIESLKV---- 270 ++ A Y + R+ LL L+V Sbjct: 259 VRVLADMKATAERRYREALEGQERLLPVPQQEIPSALRQYFDLERERLLQTRILEVLAPL 318 Query: 271 -------DDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLG 316 ++ + A + V + P+++ P++++ ++ L + VL Sbjct: 319 YEQARFEEERRVEAVQVVDPAVPPVKKAWPRRSLIVLGITLAAFALSVLFVLA 371 >UniRef50_C2M1S4 Putative uncharacterized protein n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M1S4_CAPGI Length = 370 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 51/368 (13%), Positives = 129/368 (35%), Gaps = 64/368 (17%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT---- 63 +S ++IDL+ LL ++ +GK TI +V + + +K+++T+T+++ Sbjct: 1 MSQDIQKDDEIDLLALLQKIVQGKKTIFKCFLVFFVIGVFIAIFSKKEYTATSLVLAQEN 60 Query: 64 -QPDVGQIAGYNNAMNVIYGQAAPKV-----------------------SDLQETLIGRF 99 G ++G + + + + +Q++ Sbjct: 61 NAAAGGSLSGLASLAGINLSSGSSDLISPKLYTSIAQSIPFLRKMIQARIKVQQSNTPIT 120 Query: 100 SSAFSALAETLDNQEEREKLTI-EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYI------ 152 + + + + +K TI PS+ ++ + Q + L Y Sbjct: 121 YQEYYQKYDKGNFLDVIQKYTIGLPSLIVDKVTPSEENTPQYTTSEKDTLEVYPLTHEEK 180 Query: 153 ------------------QQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEV-VAQEQK 193 V + E + + LQ+++ + A++Q Sbjct: 181 GLFGLLKSQLKITNNDKDNTVSLSFSMEDPVAAAQMLEQAKNYLQETIIEFKTRKAKKQL 240 Query: 194 DLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSP 253 + +Q +EA + + Q+ L+ + + + ++ L + Sbjct: 241 EFIQKQYEEAEKSFKEKQIR-------LAAFQDSNRGLITAVPMTRQSQLQSDYNLAY-- 291 Query: 254 NYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGI 313 N Y + + +KV + D A+ + +P+ + PKK + + + LG ++G G Sbjct: 292 NLYVELAKQYENQKIKVQE-DTPAFITIEPVSIPLEKSKPKKGMIIAIWSFLGIVIGIGT 350 Query: 314 VLGRNALR 321 + ++ ++ Sbjct: 351 IFAKDFMK 358 >UniRef50_B6B6U1 Succinoglycan biosynthesis transport protein ExoP, putative n=2 Tax=Rhodobacterales RepID=B6B6U1_9RHOB Length = 714 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 48/275 (17%), Positives = 86/275 (31%), Gaps = 31/275 (11%) Query: 10 GQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAK-EKWTSTAIITQPDVG 68 + D + IDL L LWRGK +++ AI L Y VA ++TS+A++ Sbjct: 19 AETPDEDVIDLGALFATLWRGKWIMLLVTAAAIFLGGIYAFVAAVPQYTSSAVVMLETKQ 78 Query: 69 Q-IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV-- 125 + + + ++ + G +V+ E L R + L E +EPS Sbjct: 79 ESVVDLRSVVSGLSGDYT-EVNSELEVLQSRGLMSKVVDKLNLMGDPEFNGTLVEPSALG 137 Query: 126 -----KNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD 180 Q+ + E + + Q I + L+ I++ Sbjct: 138 SLVWTVKSQIKSLLGLQKPAEEMPEELVEQLI-------RDSVVSTLQSKISVRNVPYTL 190 Query: 181 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESM 240 +K I L NQ +V +Q +T L++ Sbjct: 191 VFEVTAETESARKSALIADTIVDLYILNQIEVKFDATEQATTWLTGR------VAELKAE 244 Query: 241 IKHEATR--------PLVFSPNYYQTRQNLLDIES 267 ++ + LV L D+ Sbjct: 245 LETAEAKANEFNAGTALVSPEALQAQEVQLKDLRE 279 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/44 (43%), Positives = 30/44 (68%) Query: 279 RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 R + + ++P+R +PKK++ L ++ +LG MVGAGIVL A R Sbjct: 414 RLLSRAVIPLRPSAPKKSLILAMSGILGLMVGAGIVLLMEARRR 457 >UniRef50_Q2CAF1 Putative uncharacterized protein n=2 Tax=Rhodobacteraceae RepID=Q2CAF1_9RHOB Length = 719 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 81/430 (18%), Positives = 138/430 (32%), Gaps = 122/430 (28%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYL-AVAKEKWTSTAIIT----QPDVGQ 69 ++IDL+ LL LWRGK I+++ ++A+A + Y VA+ K+ +T I P V Sbjct: 28 DDEIDLLALLRTLWRGKWLILLAALLALAAGVYYATQVAEPKYAATTAIALQVNNPQVVD 87 Query: 70 IA-----------GYNNAMNVIYGQA---------------APKVSDLQETLIGRFSSAF 103 N + VI + A S E + + Sbjct: 88 FESVMSGVSTDDTSMNTEVEVIRSRGLLEQLVDRLDLLEDPAFNTSLRPEEGLSLTALLA 147 Query: 104 SALAETLDNQEEREKLTIEPSVKN----------QQLPLTVSYVGQTAEG------AQMK 147 E D + + + Q+ ++ T + A Sbjct: 148 PLTGEAPDAAAASGEAAALNATVDQVRDALGASVQRDTFILNIRATTGDPQKSALIANTL 207 Query: 148 LAQYI-QQVDDKVN-----------------QELEKDLKDNIALGRKNLQDSLRTQEVVA 189 YI Q+ K EL + AL ++ S E + Sbjct: 208 AELYIEDQIAVKFQGTEEAVAWLSDRVTALEDELRQKEDQIAALRAESELVSAEALEGLN 267 Query: 190 QEQKDLR-----------------------IRQ--IQEALQYANQAQVTKPQIQQTGEDI 224 ++ KD+R I + EAL AN A + + + D Sbjct: 268 RQAKDVRDRLTELEQQAAREAARLAELEAAIERGDTAEALALANDATLRQLAQRVEAGDE 327 Query: 225 TQDTLFLLGSEALESMIKHEATRPLVFSPNYY--------QTRQNLLDIESLKVDDLDIH 276 LF +E + + +++ R + + QT ++ L+ + + Sbjct: 328 AAGELFERRAETVLARARNDLARTEAQAASLETSLARLQTQTEAQSAELAQLQQLEREAQ 387 Query: 277 AYRYVMKPML------------------------PIRRDSPKKAITLILAVLLGGMVGAG 312 A R + + L P +P+KA LA++LG MVG G Sbjct: 388 ATRTLYETFLARLKETTVQRGLQQADARILSYATPGEMVAPRKARIAALALILGLMVGTG 447 Query: 313 IVLGRNALRN 322 IVL R A+R+ Sbjct: 448 IVLLREAMRS 457 >UniRef50_A0NNU3 Putative MPA1 family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNU3_9RHOB Length = 636 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 45/346 (13%), Positives = 106/346 (30%), Gaps = 51/346 (14%) Query: 20 LIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV------------ 67 + L R + + +++++ + A L V + K+ + + I +V Sbjct: 23 FFAMFKVLRRNWLWLTLAMLLGLGAAYQALQVIQPKFAARSTIILANVETRINPTETTIE 82 Query: 68 -GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVK 126 + + + ++ + L S F+ + + E + Sbjct: 83 NSDTSLIHVETEIDLLRSVEFARKVASELNLISDSYFNPYLSATETPVPNQDQQFEAVLV 142 Query: 127 NQQLPLTVSYVGQT---------------AEGAQMKLAQYIQQV---DDKVNQELEKDLK 168 TV G++ A+ A YI+ +V Q +L+ Sbjct: 143 RMLDSYTVERRGESLALDIRVRHPDAGMAAQLANTLSKTYIESSLREKKEVVQSSISELR 202 Query: 169 DNIAL----------GRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQ 218 D IAL L + ++ + ++ + A + ++ Sbjct: 203 DRIALLGGRLSEMEARLAALIRDNELDDTSLGDELRAELGRLTSIMSLAGDQNASSIRVN 262 Query: 219 QTGEDITQDTLFLLGSEALESMIKHEATRPLV---FSPNYYQTRQNLLDIESLKVDDLDI 275 + + + + LE + E T+ + + + + + +L+ + Sbjct: 263 EAELRLAEV------EKKLEERTRAELTQSKLQRSLDADLARYQALVERRNALETQVDFL 316 Query: 276 HA-YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 R V P++ +P + L L + G +VG VL R Sbjct: 317 QPDARQVTVASAPLKPATPNRIAILALGLAGGLIVGLAFVLLRELF 362 >UniRef50_D1PXM6 Chain length determinant protein n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PXM6_9BACT Length = 346 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 45/348 (12%), Positives = 107/348 (30%), Gaps = 39/348 (11%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 + D IDL + +W+ K +I++ +A L Y+ + + Sbjct: 1 MPEKKDINPIDLTKIAQSIWKHKKIYLITLPIAFVLGCFYVLSIPRYYNCQVKLAPETAN 60 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQ 128 N ++ + L + L ++D + + I+ Sbjct: 61 --TNLGNLGSLASSVGIDITGKMGHNLDAISPELYPDLMSSIDFRVSLFPVQIKTQDNRF 118 Query: 129 QLPLTVSYVGQTAEGAQMKLAQYIQQV---DDKVNQELEKDLKDNIALGRKNLQDSLRTQ 185 + + I ++ ++K EK + + R++ + + Sbjct: 119 EDNYYTYLERHRKSPWWAVIRGKISEILKKEEKSTYNGEKKVSPFLLSKRQHDIAGIIGE 178 Query: 186 EVVAQEQKDLRIRQIQ-------EALQYANQAQ------VTKPQIQQTGEDITQDTLFLL 232 V K + I A A+ +T + Q+ D+ + Sbjct: 179 NVKCAVDKKTNVISIDVEDQDPLVAATIADSVSSRLQTFITNYRTQKARNDLAYVKGLYI 238 Query: 233 GSEAL--ESMIKHEATRPLVFSPNYYQTRQNLLDIES---LKVDDLDIHAYRY------- 280 +++L ++ K+ A + D+E+ L+ ++ A +Y Sbjct: 239 EAKSLYEKARQKYGAYGDANMDLLLQSYKLKQEDLENDMQLRYNNYTALAMQYTAAQAKV 298 Query: 281 ---------VMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 + +PI+ PK+ I + +LL + + V ++A Sbjct: 299 QEKTPAFTTLQSASVPIKPTGPKRMIIVAFVLLLTFIGTSLYVFQKDA 346 >UniRef50_B2U7B5 Lipopolysaccharide biosynthesis protein n=1 Tax=Ralstonia pickettii 12J RepID=B2U7B5_RALPJ Length = 292 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 43/314 (13%), Positives = 104/314 (33%), Gaps = 33/314 (10%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV 67 S D + + L ++ L R + + + + AL IG V +W +TAI+ Sbjct: 2 SSSTALDHDPLTLDEVFSFLKRHAVKLAVGTLACAALGIGLAYVLPAEWEATAIV----- 56 Query: 68 GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKN 127 Q+ + + P + + + R + D L I+ Sbjct: 57 -QVGQVQAPSSPYHPTQGPVLLETPARTVERLKA-----DAFTDTLLGNLGLPIKSGTSR 110 Query: 128 QQLPLTVSYVG---QTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRT 184 + + S+ +T+E ++++ + QQ + ++ L A + D ++ Sbjct: 111 RADLIRNSFNARVLRTSELVEIRVRDFSQQDAQRTLLAVQNQLIRAHAALLQPTLDRYKS 170 Query: 185 QEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHE 244 + +++++A + + + P E++ L + + HE Sbjct: 171 DYNLVSHHLADARQRLEQARKLTSVQKAANPGASTFAENV------------LLTSVLHE 218 Query: 245 ATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVL 304 + + L ++ + R + R P+++ L+ + Sbjct: 219 T------EVEISKLQLQLSELNEQMSPTRTFNT-RTFSDATVSQRPVFPRRSAFLLAGAI 271 Query: 305 LGGMVGAGIVLGRN 318 G ++ I L R Sbjct: 272 FGLVITFAIALIRE 285 >UniRef50_C8X034 Lipopolysaccharide biosynthesis protein n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X034_DESRD Length = 296 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 41/322 (12%), Positives = 100/322 (31%), Gaps = 66/322 (20%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGY-LAVAKEKWTSTAIITQPDVGQI 70 ++IDL++L + LWR K + I+A A + + + +TA I + + Sbjct: 25 PQADDEIDLVELWLILWRRKWLVAGVTILATLAATFITVFGIQPAYKATATIRAVETEEF 84 Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAE-----TLDNQEEREKLTI-EPS 124 + + +V+ + Q +L+ + E +D + L Sbjct: 85 SNKDFLESVLTSNIFKRKVIEQNSLLPHYFPEKWNPQEGTWRSGVDIPTSTQVLASGRFP 144 Query: 125 VKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRT 184 +K Q +S A+ +++ + L + +++ + T Sbjct: 145 LKIQTSGHEISLTWTDADP---------HFAANQLEKTL-DVFRSHLSQATPAETKQIAT 194 Query: 185 QEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHE 244 + Q +++I+ A + + + L S+I+ + Sbjct: 195 IDTHIQS-----LQEIKGATEAPEELNIE-----------------------LASLIRKK 226 Query: 245 ATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVL 304 A L+ ++ + +P+ P P+ + L L + Sbjct: 227 A---------------------ELESQRDLYQSFTLINEPLPPSSPTKPRTQLILALTLA 265 Query: 305 LGGMVGAGIVLGRNALRNYNAK 326 G + ++N + Sbjct: 266 TSLFAGVFLAFLLEFIKNARQR 287 >UniRef50_A4BYL5 Putative uncharacterized protein n=1 Tax=Polaribacter irgensii 23-P RepID=A4BYL5_9FLAO Length = 371 Score = 56.7 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 57/361 (15%), Positives = 129/361 (35%), Gaps = 55/361 (15%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ-------PDV 67 + ID+I LL + W + +I+ +V L + +K ++T++ Sbjct: 13 DDSIDIIALLKEFWNARRSILKITLVFAFLGLFVAIFSKNEYTASTTFVPLVQGKSSGGS 72 Query: 68 GQIAGYNNAMNVIYGQAAPKVS-DLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVK 126 +N+ G ++ ++S +L ++ L L + + + ++ + + Sbjct: 73 LGSLASLAGINLGGGGSSDEISPELYPLIVNSIPFQLELLNTQLTIEGQEQLVSYQYYYE 132 Query: 127 NQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKN--LQDSLRT 184 N P + + + G L +++ + + + + I++ + L SL+ Sbjct: 133 NIYSPGVLHIIKKYTLGLPSLLISFLKSDAEIIEKNTLDKENEIISISQTESVLIKSLKA 192 Query: 185 Q---------------------EVVAQEQKDLRIRQIQEAL------QYANQAQVTKPQI 217 Q + A+ +I AL A + + Sbjct: 193 QLGLSVNAKEGYISISVTLPEAKASAELALKAQITLQDYALNFKTQKSIAQLNYIKERYA 252 Query: 218 QQTGE------------DITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDI 265 ++ E D LG L ++ ++ L FS + L+ Sbjct: 253 EKKDEFNSVKFTLARFQDQNNGINTSLGRTKL---LQLQSDYDLAFSV--FSELAKKLET 307 Query: 266 ESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 + L+V D + + +P + PK+AI LI+ + LG ++ G +LG+ L++ A Sbjct: 308 QQLQVKK-DTPLFTVLKPVSIPSEKSGPKRAIILIVYLFLGFVISLGAILGKKYLKSLKA 366 Query: 326 K 326 + Sbjct: 367 E 367 >UniRef50_B7AIQ3 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B7AIQ3_9BACE Length = 371 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 61/360 (16%), Positives = 119/360 (33%), Gaps = 50/360 (13%) Query: 1 MRVENNNVSGQNHDPE-QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTST 59 M EN + Q E +IDLI+L ++W + + + +A + + +++++ Sbjct: 1 MSEENIQKTTQQQPEEQEIDLIELAQKVWAERKLVFKACGIAALIGLVVAFSIPKEYSTK 60 Query: 60 AIITQ-----PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQE 114 + G + + G A+ L L + L E D + Sbjct: 61 VTLAPESAGKTSAGGMGALAAMAGINLGGASAGEDALSPELYPDIVKSTPFLLELFDVKV 120 Query: 115 EREKLTIEPSVKN-------------------QQLPLTVSYVGQTAEGAQMKLAQYIQQV 155 + +K ++ ++ + L T+S E + K+ + V Sbjct: 121 KDQKGKVDTTLYAYLDKYQRSSWMGAVVSAPFKALGWTLSLFKDKPEKREGKIDPFHLTV 180 Query: 156 DD-KVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQK-------------DLRIRQIQ 201 D+ +V + L K + I + Q+ + D R + + Sbjct: 181 DETRVAEALSKRILVTIDKKTGVTTLEVTMQDPLISASLTDTVMHCLQNYITDYRTNKAR 240 Query: 202 EALQYAN------QAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNY 255 L + +A + Q + + LL A + +K+E Y Sbjct: 241 HDLAFTEKLYKEAKADYEEAQKKYATFADANQNIILLSYRAEQERLKNEMELAYTV---Y 297 Query: 256 YQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVL 315 Q L + KV ++ Y V +P+R P K + LI V L G+ G +L Sbjct: 298 TQVSGQLQMARA-KVQEIT-PVYTVVQPATVPLRAAKPNKIMILIGFVFLAGVGCVGWIL 355 >UniRef50_A3WQF3 Putative tyrosine-protein kinase Wzc (Fragment) n=1 Tax=Idiomarina baltica OS145 RepID=A3WQF3_9GAMM Length = 290 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 27/56 (48%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + + N++ ++IDL L+ L K II + + + Y +A + + A++ Sbjct: 8 SNTSHNNNEDEIDLRRLVGVLLDAKWLIIGITFLFMLGGVAYALLATPIYKADALL 63 >UniRef50_Q7NQT3 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NQT3_CHRVO Length = 351 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 54/332 (16%), Positives = 114/332 (34%), Gaps = 35/332 (10%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 + P++++L D+++ ++ ++ LA G +++T+ A++ P Sbjct: 22 RQSAPDELNLFDIILVAKEQWRLLLAVPLLLAVLAAGISLAMPDQYTAKALVNIPAPVGA 81 Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQL 130 AG G + + L E + +F E + ++ + L Sbjct: 82 AG---------GVNIVQSTSLLEQAVEKFQLQRYYAVEDNRSALLALSNVVKTTAGKDGL 132 Query: 131 PLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSL--RTQEVV 188 L +S + AE A + D Q + + LQ L +++V Sbjct: 133 -LEISATDRNAEQAARL----GNYLADLTRQHILDGNLTEQSKRYFVLQKRLDVESEQVS 187 Query: 189 AQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEA---LESMIKHEA 245 +K ++ QEA Q+ + Q+ S A L+S + Sbjct: 188 QLSRKVAQLVPDQEAALGGEGMQLISGFATLEAQLAFQNVQAAGNSGAVSNLQSSVMQLR 247 Query: 246 TRPLVFSPNYYQT-RQNLLDIESLK---------------VDDLDIHAYRYVMKPMLPIR 289 + +P Q + L + L L + V+K P+ Sbjct: 248 ASLELANPKVRQMSNEQLAGLRDLYFHRALAAELQRQVSLAKSLADQDVQIVLKASAPLE 307 Query: 290 RDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 + PK+ + ++LA L+G M+ +++ + R Sbjct: 308 KSGPKRTLIVLLAGLVGLMLAIALIVCKRQWR 339 >UniRef50_B2AHI0 Tyrosine-protein kinase n=5 Tax=Cupriavidus RepID=B2AHI0_CUPTR Length = 749 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 74/228 (32%), Gaps = 35/228 (15%) Query: 126 KNQQLPLTVSYVGQTAEGAQMKLAQ----YIQQVDDKVNQELEKDLKDNIALGRKNLQDS 181 Q + V+ G +AE L + Y++Q + E EK L + L+ Sbjct: 252 GKQSGVIGVALEGTSAEKTAAILNEIGNEYVEQNLRRKAAEAEKSL-AFLEAQLPQLKQQ 310 Query: 182 LRTQEVVAQEQKDLR-------IRQIQEALQYANQAQVTK----------------PQIQ 218 L + E ++ R ++ A A Q ++ P I+ Sbjct: 311 LESAESRYNAMRNQRGTIDLNEESRLVLAQSVAAQTKLADLRQRRQELIARFTPNHPAIE 370 Query: 219 QTGEDITQDTLFLLGSEA--LESMIKHEATRPLVFSPNYYQTRQNLLDIESLK----VDD 272 + I +G+ ++ + E + T + ++ V Sbjct: 371 ILDKQIAD-VNAEIGTVGGKIQRLPDIEQNVLRLMRDVRVSTEMYQSLLNDVQQLRLVKA 429 Query: 273 LDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 I R V +PIR P + + +VLLG + G +V+ R Sbjct: 430 SKIGTARLVDPAEVPIRPVKPNRKLIAAASVLLGLLAGTAVVVLRRLF 477 >UniRef50_A9WAT9 Lipopolysaccharide biosynthesis protein n=2 Tax=Chloroflexus RepID=A9WAT9_CHLAA Length = 443 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 84/219 (38%), Gaps = 26/219 (11%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWT-STAIITQPDVGQIAGY 73 ++IDL L L R I+ + + L + T ST+++ P Q+ Sbjct: 2 NDEIDLRPYLSALLRRWWIILGTALGVALLVGVLAWIRTPPHTASTSLLIVPASAQV-TL 60 Query: 74 NNAMNVIYGQAAPKVSDLQETLIGRFSSA-----FSALAET---LDNQEEREKLTIEPSV 125 +N + +E L+G A +A+ E+ L + + L+ ++ Sbjct: 61 DNRFTSRDSLLFTTTVNQREALLGLARDATLEERVAAILESEGRLPDGYQLGNLSQRITI 120 Query: 126 KNQQLPLTVSYVGQTAEGAQMKL----AQYIQQVDD---------KVNQELEKDLKDNIA 172 + + ++ TA+ A+ +Y + V++ ++ ++ + ++ Sbjct: 121 ETDGDLVRITARADTADDARRLAILWGQEYTRLVNETYTRDTSSLELVEQQLTEARERYQ 180 Query: 173 LGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQ 211 + + L+ + E+ A EQ +R++ + + A A Sbjct: 181 MAQAELEAFIAQGELAAAEQ---EVRRLSDLVNSARAAG 216 >UniRef50_B9ZNL2 Lipopolysaccharide biosynthesis protein n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZNL2_9GAMM Length = 371 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 51/371 (13%), Positives = 107/371 (28%), Gaps = 63/371 (16%) Query: 2 RVENNNVSGQNHDP--EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTST 59 R + NH ++I L+DL L R K I I + L Y + ++ Sbjct: 13 RTSGDRPDPGNHSRYDDEISLVDLWNVLSRRKWWIAAVTIAVLLLGTLYGFLKTPSYSFQ 72 Query: 60 AIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKL 119 I + + ++ T + + L + E Sbjct: 73 TTI-------------QLGQDDRGNPVEDPNVTVTFLNNVLIP-GIWRDLLADSPETRPP 118 Query: 120 TIEPSVKNQQLPLTVSYVGQ-TAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNL 178 + + ++ + A +L + + + + D++ +A R+ Sbjct: 119 EASARYVDGTEYVHLTTSAPMDRKEAVEQLHTLTTRALRQNHVQHIDDIRAELADQRREQ 178 Query: 179 QDSLRTQEVVAQEQKDLRIRQIQEA-----LQYANQAQVTK------PQIQQTGEDITQD 227 + Q Q D + A L +A + + P +Q + Sbjct: 179 ELQHAAQLEQLQGDLDSITEHKERATSRLELLTEERALLEEQIDGLHPLREQLDAALADT 238 Query: 228 -----TLFLLGSEALESMIK----HEATRPLVFSPNYYQTRQNLLDIES----------- 267 L+ + L S++ E + + Q L ++ES Sbjct: 239 DQSAAPLWSM--MPLTSIVDMRYSAERRLRTELPDHVQEVEQRLSELESSSERIASQMER 296 Query: 268 -----------LKVDDLDI--HAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIV 314 L + + R + + P +++ + L+++LG M+G Sbjct: 297 EQSRHEIAMAALDRREQRVRETVARGSDYALASNTPEGPGRSLFVALSLILGLMLGVFGA 356 Query: 315 LGRNALRNYNA 325 R L N A Sbjct: 357 FFREFLANVRA 367 >UniRef50_P58764 Tyrosine-protein kinase etk n=184 Tax=Enterobacteriaceae RepID=ETK_ECO27 Length = 726 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 38/92 (41%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M +N N + +IDL+ L+ +LW + II + +A+ Y ++ + + Sbjct: 1 MTTKNMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADT 60 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQ 92 ++ A + ++I + ++Q Sbjct: 61 LVQVEQKQGNAILSGLSDMIPNSSPESAPEIQ 92 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 7/89 (7%) Query: 234 SEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSP 293 E L EA R + Q ++ I R + + + P Sbjct: 370 QEVLRLSRDVEAGRAVYLQLLNRQQELSIS-------KSSAIGNVRIIDPAVTQPQPVKP 422 Query: 294 KKAITLILAVLLGGMVGAGIVLGRNALRN 322 KKA+ ++L +LG + G VL R LR Sbjct: 423 KKALNVVLGFILGLFISVGAVLARAMLRR 451 >UniRef50_Q39VZ4 Lipopolysaccharide biosynthesis n=5 Tax=Geobacter RepID=Q39VZ4_GEOMG Length = 401 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 51/361 (14%), Positives = 119/361 (32%), Gaps = 59/361 (16%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 ++I+L++LL L R K I + + A L+ Y +T TA + P G + Sbjct: 14 DEINLLELLQVLVRRKRLIAVMCVAAALLSAAYSLTLPNIYTGTARVLPPQKDGGGGLSA 73 Query: 76 AMNVIYGQAAPKVSDLQETL-------IGRFSSAFSALAETLDNQEE---------REKL 119 + G A I + S A+ + LD Q+E R KL Sbjct: 74 LLGGQAGALAGLAGVGGLGGGADLYVGILKSRSVADAVIKKLDLQKELETKTPDETRTKL 133 Query: 120 TIEPSVKNQQLP-LTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ-ELEK------DLKDNI 171 ++ + +TV+ + + A ++ ++ K + L K L+ + Sbjct: 134 QNVVKIQAGKDGIITVAADSRNPQLAARLANTFVDELGKKSVELNLTKAGTERIFLEKRL 193 Query: 172 ALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQ---QTGEDITQDT 228 + + +L+ + ++ + ++ A A++ + Q + T Sbjct: 194 DVVKADLKKAEEALRGFQEKNRAFKVDDQATA-TIEGAAKLKAEIVSKEVQLASLRSYQT 252 Query: 229 LFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLL-------------DIESLKVDDLDI 275 +A+E+ + + + L + +K + Sbjct: 253 NENPEVKAVEAALARLRGQLGALTGGGRSNDLMLSAGAMPTLGLEYVRLMREVKTQEAIF 312 Query: 276 ------------------HAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGR 317 + + + + + P ++ PK+++ +IL+ + +G I + Sbjct: 313 EQLTKQYEVAKLGEAKDSSSIQVLDEAVAPQKKSKPKRSLIVILSTVTALFLGIFIAFIQ 372 Query: 318 N 318 Sbjct: 373 E 373 >UniRef50_B2TEB6 Exopolysaccharide transport protein family n=5 Tax=Burkholderia RepID=B2TEB6_BURPP Length = 740 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 28/61 (45%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 + D ++ID+ L+ +++ K II IV + + Y +A + + D +A Sbjct: 6 SRDEDEIDIRALIDVIFKNKKLIIAVTIVCTLIGVMYAFLATPIYRGDITVQVEDNSDLA 65 Query: 72 G 72 G Sbjct: 66 G 66 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 88/239 (36%), Gaps = 31/239 (12%) Query: 113 QEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQ----YIQQVDDK---VNQELEK 165 ++ R+ L I K+Q + V+Y Q A L + Y+ Q D+ ++ Sbjct: 230 EQLRKDLVITEMGKDQSGVIGVTYDDQDPARAAAVLNKIAENYVAQNADRKAAAAEKSLV 289 Query: 166 DLKDNIALGRKNLQDSLRTQEVVAQEQKDLRI-RQIQEALQYANQAQVTKPQIQQTGEDI 224 LK + ++L+ + K + + Q + L A +AQ + Q++Q +++ Sbjct: 290 FLKSQLPDVERSLRLAEDRLNAYQNRHKVVDLSEQAKAVLGQAVEAQSSLFQLEQKRKEL 349 Query: 225 TQDTLFLLGSE-ALESMIKHEATRPLVFSPNYY------------------QTRQNLLDI 265 + AL+ I F+ + QT + + Sbjct: 350 ATIYSAQYPAVLALDQQIAAARAHIDNFNESIQRLPDDQQNIVRLNRDVTVQTSLYVGLL 409 Query: 266 ESLK----VDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 S++ I R + ++ + PKKA+ + LA ++G G G L R+ L Sbjct: 410 NSVQQLQLATASKIGNVRVIDHALVADKPTKPKKALVIALAAVIGLFGGIGFALARSTL 468 >UniRef50_Q2T3S0 Chain length determinant protein domain protein n=19 Tax=pseudomallei group RepID=Q2T3S0_BURTA Length = 405 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 56/353 (15%), Positives = 117/353 (33%), Gaps = 56/353 (15%) Query: 22 DLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG------QIAGYNN 75 D+L+ L GK I V A+ L I V + + ++ PD + + Sbjct: 28 DVLIALGHGKGLIARIVAAAVLLGIALALVLPPIYEARTVLLPPDESRGLFGHSLGSLDV 87 Query: 76 AMNVIYG----------QAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV 125 G A K + ++++LI +F +T+ + + + ++ Sbjct: 88 IAGAAMGIDFKTPGELYVALLKSTSIEDSLIRQFGLRKRYRVDTMHAARKALQSRVSVTL 147 Query: 126 KNQQLPLTVSYVGQTAEGAQMK-------LAQYIQQVDDKVNQELEKDLKDNIA---LGR 175 + LT++ A LA+ ++++ Q+ L+ + + Sbjct: 148 DKKSGLLTIAADDTDPAVAADLANAHVAALAKLLERIAVTQAQQRRAFLEKEVDKSRVAL 207 Query: 176 KNLQDSLRTQEVV-----------AQEQKDLRIRQIQEALQY----------ANQAQVTK 214 N QD+ + + IR + A Q A QV + Sbjct: 208 ANAQDAYVKLQAKSGVVSVDADTQLAIRHSAEIRSLLAAKQIELSSIGTYATAENPQVKR 267 Query: 215 ------PQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESL 268 Q + D L GS+A + ++ + R + + N L++ + Sbjct: 268 IEAEVSTLKAQLEKIENGDAASLRGSDAGMATLR--SYREMKYQENVVDVLSRQLELARV 325 Query: 269 KVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 + + V P R+ P + + L+ + G ++ +V+GR R Sbjct: 326 D-EAKSGPLVQQVDVAAPPERKAKPSRLLILLASFAGGFVLAVTVVIGREFGR 377 >UniRef50_A1WZL7 Lipopolysaccharide biosynthesis n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZL7_HALHL Length = 518 Score = 54.4 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 39/241 (16%), Positives = 80/241 (33%), Gaps = 20/241 (8%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAK--EKWTSTAIITQPDVG 68 Q+ ++I LIDL + L R K I +V + Y + + +++ S Sbjct: 25 QDPRDDEISLIDLWLVLMRRKWVIAGVFLVCVVGGAAYAYLDEPGQRYVSAL-------- 76 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQ 128 +I Y + D E S + L + R +E SV + Sbjct: 77 EIGTYPTG-----SDDVATLEDRAEVATRLRESLVPLVRYELAQEHGRSFPGVEVSVPEE 131 Query: 129 QLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVV 188 P ++ TA + A + + + Q++ D + + + + L + + Sbjct: 132 DAPGGFVFLQSTAPEDR---ADVVSSIHQNLIQQIIDRHNDRLEVRQARFEARLESMDAD 188 Query: 189 AQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRP 248 +E + R + QEA + +++ G + L E+ +K Sbjct: 189 LEELRAKRAERRQEAEHRVEAHKDRLERLESAGAQRKEQLTHALEEA--EAELKTLRENE 246 Query: 249 L 249 Sbjct: 247 D 247 >UniRef50_Q1ITA8 Lipopolysaccharide biosynthesis n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ITA8_ACIBL Length = 428 Score = 54.4 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 48/362 (13%), Positives = 113/362 (31%), Gaps = 75/362 (20%) Query: 28 WRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAM---------- 77 W + I+ + ++ + ++ V +++ STA I P+ G + A+ Sbjct: 30 WERRGAIVKAAVIGVIVSTTLAFVIPKQYESTARIMPPEGGMSSAIMAALASRALPGNLG 89 Query: 78 ----NVIYGQAAPKVS-------DLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVK 126 ++ Q+ V + E ++ RF + + ++ E + Sbjct: 90 AIAGSLFGFQSTSTVFVNLLQSRSVTERVVDRFDLQKVYRSRYKQDALKKLHRRTEIAED 149 Query: 127 NQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ--------------ELEKDLKDNIA 172 + +T++ A+ Y+ +++ V + + +K ++ Sbjct: 150 RKTGIITITVADTDRRRARDMAQTYLDELNSLVTRVNSSAAGREREFIAQRLVTVKRDLD 209 Query: 173 LGRKNL-------------QDSLRTQEVVAQEQKDLRIRQIQEAL--QY----------- 206 + L + + E A+ + +L I + + + Q Sbjct: 210 DAERQLSVFSTKNATLDVKEQTRAMVEATAKLEGELIIARSELSSLDQIYGPENVRVRAG 269 Query: 207 -ANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFS--------PNYYQ 257 A Q+ TG + D L ++ ++ Sbjct: 270 RARVGQLEHELKNATGSGVPSDITESTPYPPLRALPTLGVQWADLYRRVKLQETVFELLT 329 Query: 258 TRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGR 317 L IE K I + + P P R+ P + + +++ LL ++G V+ R Sbjct: 330 QEYELARIEEAKA----IPSISVIDPPNWPERKSFPPRLVIMLVGTLLS-VLGTFFVIVR 384 Query: 318 NA 319 A Sbjct: 385 KA 386 >UniRef50_B2PVB4 Putative uncharacterized protein n=3 Tax=Providencia RepID=B2PVB4_PROST Length = 693 Score = 54.0 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 36/258 (13%), Positives = 79/258 (30%), Gaps = 44/258 (17%) Query: 66 DVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV 125 + N+ + Q + ++ + + LDN E + + Sbjct: 230 KAENVQILNSIIQNYVDQNTERKKEVTNNTLLFLDEYLPKVKTKLDNYENQLN-----AF 284 Query: 126 KNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQ 185 + + + +S ++A + +++ + + + + +Q Sbjct: 285 RKKNESIDLSLEAKSALDSALQVEEKL----------------NELTFKEVEIQQLYTRN 328 Query: 186 EVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEA 245 Q D R + ++E + + Q P QQ +T+D Sbjct: 329 HPAYQSLLDKRQQLLREKEKISKNIQ-KLPNTQQQIVRLTRD-----------------V 370 Query: 246 TRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLL 305 +Q L + S D+ R + +PKK + ++LA +L Sbjct: 371 ESEQAIYNQLVAKQQELSVLNSGITADV-----RIIDSAESQPNAIAPKKTLIVVLATIL 425 Query: 306 GGMVGAGIVLGRNALRNY 323 G +VG V+ R N Sbjct: 426 GFIVGCAYVIAREFFNNK 443 Score = 54.0 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 34/278 (12%), Positives = 92/278 (33%), Gaps = 16/278 (5%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 N + ++IDL+ L L + I + I + Y +A + + A + Sbjct: 2 NTTKTSSAASDEIDLLALFKVLKSSYLKIGFFTLFFIVIGAAYSFLATPIYQANATLQYD 61 Query: 66 DVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV 125 + Q++ + +V+ E + + L+ + Sbjct: 62 KMSQVSLLDQMSDVMPFANNNNSQADSEIEVIKSRMVLGKTVADLNLDIHTAPAGFFDRL 121 Query: 126 KNQQLPLTVS-------YVGQTAEGAQMKLAQYIQQVDDKVNQELEKDL--KDNIALGRK 176 + + +S +G+ A + +Y +D++ + +L +D I+L Sbjct: 122 WGDKASVAISLYSLPEHLIGEPAIVTYLGENRYALHIDNQTFEGKVGELLKQDEISLLVS 181 Query: 177 NLQDSLRTQEVVAQEQKDLRIRQIQEALQYAN---QAQVTKPQIQQTGEDITQDTLFLLG 233 ++ + + +++ + I ++ L A + I+ + L + Sbjct: 182 SINAEVGQEFTLSKNARYSTIENLRNTLTIAEVGKSTGIINLAIKGADKAENVQILNSII 241 Query: 234 SEALESMIKHEA---TRPLVFSPNYY-QTRQNLLDIES 267 ++ + + L+F Y + + L + E+ Sbjct: 242 QNYVDQNTERKKEVTNNTLLFLDEYLPKVKTKLDNYEN 279 >UniRef50_Q7NZZ7 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NZZ7_CHRVO Length = 401 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 91/277 (32%), Gaps = 36/277 (12%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 S Q ++IDL LLV+L R + II I+ + + Y +AK +T+ I P Sbjct: 13 SSQPTQNDEIDLTALLVKLARQRNWIIACTILCGTVTLCYALLAKPIFTAQTSIMPPQ-- 70 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQ 128 + + I + L ++ +KL ++++ Sbjct: 71 -----QQSSGMSALLGQLGGLAGAAGGISGLKNPNDLYIGMLQSRTVADKLIARFKLQSR 125 Query: 129 QLPLTVSYVGQTAEGAQMKLAQYIQQVDDK------VNQELEKDLKDNIALGRKNLQDSL 182 Y +T EGA+ L Q V K + + +A + +L Sbjct: 126 -------YEQETVEGARKTLQQKSSFVSGKDGLIAVAVDDTDPQFAATLANAYVDELKAL 178 Query: 183 RTQEVVAQEQK-----DLRIRQIQEALQYA--------NQAQVTKPQIQQTGEDITQDTL 229 V K + +++ + L A + P+ Q + L Sbjct: 179 NRSLAVTDAAKRRLFFEQQLKDTKAQLAAAETDLRKTQEATGLILPEGQLPAIVSSVTQL 238 Query: 230 -FLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDI 265 + ++ E ++ + +P Y + +Q L + Sbjct: 239 RATIAAK--EVQLEAMKSFATAQNPAYIKAQQELSGL 273 >UniRef50_A3JHV6 Putative uncharacterized protein n=1 Tax=Marinobacter sp. ELB17 RepID=A3JHV6_9ALTE Length = 260 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 51/321 (15%), Positives = 108/321 (33%), Gaps = 76/321 (23%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 ++ Q+ ++I L+DL R + + ++ + Y A K+ +++ Sbjct: 7 HSQEDQDRYSDEISLVDLATTFIRRRRVFYVVFLIFTLGGLAYALQASNKYEYVSLV--- 63 Query: 66 DVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV 125 V Q G +V A ++ L+ + +A+ A Sbjct: 64 QVAQKGG-----DVSLQPPAVVIATLENRWLPEVQTAYRA-------------------K 99 Query: 126 KNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQ 185 + +LP ++S+ EG IQ + + D++ L D L Sbjct: 100 NDTKLPFSISF--NNPEG-----TGLIQLTSETALEH-----GDDVKAAHAALIDYLSRY 147 Query: 186 EVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEA 245 + +Q + + + ++ + +A +P EAL + I+ A Sbjct: 148 QAERIKQDRVSLERQMKSAETIIEALRGQPDT----------------GEALAAAIQRVA 191 Query: 246 TRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLL 305 +E+L ++ + + + PK+++ +ILA LL Sbjct: 192 GLE--------------SALENLDETEVLVQS-------RQSAEKTGPKRSLIVILATLL 230 Query: 306 GGMVGAGIVLGRNALRNYNAK 326 GGM+G +V N + Sbjct: 231 GGMLGVFMVFMAEFGANVKMQ 251 >UniRef50_Q74C20 Capsule polysaccharide export protein, putative n=1 Tax=Geobacter sulfurreducens RepID=Q74C20_GEOSL Length = 406 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 56/377 (14%), Positives = 130/377 (34%), Gaps = 63/377 (16%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 N N S N + E+I +++ L + G I I ++A L++ + +T I Sbjct: 10 NANDSSNNFEAERICILEYLEVVLCGWKLITILTVLAFVLSLVISISLPNVYKATTRILP 69 Query: 65 PD------------VGQIAGYNNAMNVIYGQAAPKVSDLQ----ETLIGRFSSAFSALAE 108 P G G + G+A P + E + + F+ + Sbjct: 70 PQQDSGLLGLMLGQAGSFGGVGPLATDLLGKANPADMYVSIMTSEAISDKIIDKFNLMKV 129 Query: 109 T-----LDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQ-------QVD 156 +D + + I+ + +T+S + + A Y+ Q++ Sbjct: 130 YNEKYRIDAYKVLDN-NIDILAGKKDGIITISVEDEDPQRAANIANAYVNELSNLLVQLN 188 Query: 157 DKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQ 216 K + + ++ +A + +L S + + K + + +A +N AQ+ Sbjct: 189 SKESAQNRVFYEERLAKAKVDLARSEDNLKQFQTKYKVVSVADQAQA-AISNIAQLNAQL 247 Query: 217 IQQTGEDITQDTLFL---LGSEALESMIKHEATRPLVFSP-------------------- 253 I Q + F L + ++S I + Sbjct: 248 IAQEIQLSNLRKQFTEDSLEVKNVKSTINGLRNQISRIESREAGGAIPNMGLIPELGQQY 307 Query: 254 ----NYYQTRQNLLDI-----ESLKVDDLDIHAY-RYVMKPMLPIRRDSPKKAITLILAV 303 ++ ++ ++D+ ES K+ +L Y + + +P ++ PK+++ + ++ Sbjct: 308 FRLMREFKVQEAIVDLLTKQFESAKLGELKDSYYVQIIQTARVPDKKSKPKRSMIVAMST 367 Query: 304 LLGGMVGAGIVLGRNAL 320 ++ G V+ + L Sbjct: 368 VITFGFGILSVIIMHML 384 >UniRef50_Q1NTS5 Lipopolysaccharide biosynthesis n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NTS5_9DELT Length = 260 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 45/318 (14%), Positives = 101/318 (31%), Gaps = 65/318 (20%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 ++ N + ++I L+DL L R K+ I + + A YL + + S A+I Sbjct: 1 MQPQNTQPAPYYDDEISLLDLWRTLARRKLIIAVVSAAVMLAAGAYLLLTTPLYESRAVI 60 Query: 63 TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIE 122 + + G+ + D L R ++ A I+ Sbjct: 61 -------------QVGSMAGETGELIED-PNILRERLTAEHPA---------------ID 91 Query: 123 PSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSL 182 +++ +T++ + A+ +L + Q+ + + + ++ K ++ ++ Q + Sbjct: 92 SVGVSRRSIVTITLQDASPAEAEQRLQAIVDQLFAE-HNAVYENSKHHLEQRQRLQQQRI 150 Query: 183 RTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIK 242 + + + + + A +++ Sbjct: 151 NELKAQ-KSELGQFVESWKNKEPTA------------------------------AAILI 179 Query: 243 HEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILA 302 E P Q L S + D + + P+ +PK + L LA Sbjct: 180 MEVGNIARMLPKLEQDLAALEQAPS-EADADRTRLFGKLQTGERPV---APKTGLVLALA 235 Query: 303 VLLGGMVGAGIVLGRNAL 320 +LG M+G L Sbjct: 236 AVLGLMLGIFTAFFAEFL 253 >UniRef50_B0VFR9 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFR9_9BACT Length = 395 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 53/383 (13%), Positives = 123/383 (32%), Gaps = 79/383 (20%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ--------- 64 + ++ L+D+++ + + K +I ++ AI Y V + W S A + Sbjct: 2 NKNELGLLDIILVIAKRKTLVISICLLVAIGAIIYSLVVPQYWESKATLMPIAESGSLGS 61 Query: 65 ----------PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQE 114 + Q Y+ A++ IY + K + +TL E Sbjct: 62 LGGGFMDLLGSGLLQTDKYDMAVDFIYIMQSRKFQEEVIRKFNLIPYYKINEPDTLKAME 121 Query: 115 EREKLTIEPS--VKNQQLPLTVSYVGQT--AEGAQ-------MKLAQYIQQVDDKVNQEL 163 K E + + Q V+ + +T E ++ L +YI ++ Sbjct: 122 LAVKKLSESTMQIFYDQKTYLVNIIAETKNKELSRQIVQYHLDSLNKYILHSKMSKGRQK 181 Query: 164 EKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEA--------------LQYANQ 209 + L+ + + + ++ + + I Q EA + + Sbjct: 182 REFLEKQVDSHLQAVYSLSEQIRDFQKKNRSIDITQQTEAQLELYSDIVAEYMQTEIEHS 241 Query: 210 AQVTKPQIQQTGE----------------------------DITQDTLFLLGSEALESMI 241 +++ + D + L + + M+ Sbjct: 242 LALSQYSADSPVVINLAEKLQLLKKKIKSLEKSGSDLVPEYIVQIDKIPDLAMQYAQMML 301 Query: 242 KHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLIL 301 E + ++ Y + L +E +K D+ + P L R PK+A+T+++ Sbjct: 302 NLEIEKKII---EYLYPQFELAKLEEVK----DLPTFEVYDAPQLAGIRSKPKRALTVVI 354 Query: 302 AVLLGGMVGAGIVLGRNALRNYN 324 + + ++ + L +L+ N Sbjct: 355 STVAAFILSCLLALIIESLQGEN 377 >UniRef50_Q65SG7 GumC protein n=2 Tax=Pasteurellaceae RepID=Q65SG7_MANSM Length = 703 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 100/272 (36%), Gaps = 33/272 (12%) Query: 83 QAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAE 142 VS L+ + RFS ++ L+ E +K Q + +++ G+ E Sbjct: 175 DIEILVSQLKGSSGKRFSLKKMEKSDVLELVEALQKAVTADEKGKQTGVIELTFKGEDPE 234 Query: 143 GAQMKL----AQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQE--QKDLR 196 Q L Y++ + + E L + ++D L E E QK Sbjct: 235 YIQKVLHSITQSYLEHSTARNSAEASNSL-SFLQKRLPEVRDRLTKSENELNEYRQKKAS 293 Query: 197 IRQIQEALQYA----------NQAQVTKPQIQQ-------TGEDITQDTLFLLGSEA-LE 238 + EA N + + +I Q + + LL +A L Sbjct: 294 VDLELEAKSVLDTLVQLDSNLNALTIRESEISQRFTKRHPNYVALLEQRQVLLDEKARLT 353 Query: 239 SMIKH--EATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHA------YRYVMKPMLPIRR 290 ++ E + V ++ Q + S K+ +LD+ R + + + Sbjct: 354 KQLESLPETQKDTVRLTRNFEVDQQIYTQLSNKIQELDVVKAGAVGNVRILDEAQTLPKP 413 Query: 291 DSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 +P+K I L+L ++G ++G+G V+ ++ L+N Sbjct: 414 VAPRKLIILVLTAIVGFLLGSGGVILKSILQN 445 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 71/214 (33%), Gaps = 19/214 (8%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT---QPDVGQI 70 + IDL LL W K I++S ++ L + Y +A + +T+ + + G + Sbjct: 5 QNDVIDLTKLLGLFWDQKRIILLSTLLCAGLGLVYSLLAPSIYMATSSVQVEEKYTGGAL 64 Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQL 130 G ++ ++ + + E + + Sbjct: 65 QGLSSIFEQESTAGTEIAVIKSRAIVSKAVEDLNLTTEVSPVYPIPFFSKAVEKLMGDKP 124 Query: 131 PLTVSYVGQTAEGAQM-------------KLAQYIQQVDDKVNQELEKDLKDNIALGRKN 177 +TV+ E AQ L + Q V + V E + +I + Sbjct: 125 EITVARFVPKREDAQEYTLVIGSNENEYSVLDEQKQLVLNGVVGEKYDN--QDIEILVSQ 182 Query: 178 LQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQ 211 L+ S + ++ + + ++ EALQ A A Sbjct: 183 LKGS-SGKRFSLKKMEKSDVLELVEALQKAVTAD 215 >UniRef50_B8F354 Tyrosine kinase, chain length regulator in capsular polysaccharide biosynthesis n=4 Tax=Pasteurellaceae RepID=B8F354_HAEPS Length = 695 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 35/77 (45%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 ++ ++IDL+ LL L K I + ++ ++ Y+ +A +T+ A I Sbjct: 3 ENNHDEIDLVKLLGALLDYKWWIALFTLLVTLFSVAYVLLAPPVYTANASIQVESKSSRG 62 Query: 72 GYNNAMNVIYGQAAPKV 88 N+ V+ G+++ Sbjct: 63 LLNDFPGVLEGESSSST 79 >UniRef50_D1BLU6 Lipopolysaccharide biosynthesis protein n=3 Tax=Veillonella RepID=D1BLU6_VEIPT Length = 481 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 71/192 (36%), Gaps = 16/192 (8%) Query: 18 IDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAG-YNNA 76 IDL ++ L + + II + + L Y +A + ST+++ ++ ++ Sbjct: 5 IDLKEVGRVLIKKRRKIINITVACMVLGGAYAFLAPSTYQSTSMLRIKQAQSLSNSVLSS 64 Query: 77 MNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLD--------NQEEREKLTIEPSVKNQ 128 N + ++ + ++ + + D E+ K IE + Sbjct: 65 ANAYSDSMSRQLMNTDAEILKSRNVVEPVITAIEDPEGTGNAPTYEDFVKTRIETKPYKE 124 Query: 129 QLPLTVSYVGQTAEGAQM----KLAQYIQQVDDKVNQE---LEKDLKDNIALGRKNLQDS 181 L VS G++ E AQ + +++++ + + E + L+ + + L+ + Sbjct: 125 TELLQVSVTGKSPEQAQEANQLLIDTFLKRLAEISHVEQRTTREFLQKRVVTAKSELEQA 184 Query: 182 LRTQEVVAQEQK 193 + + K Sbjct: 185 ENKLQQFQIDNK 196 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 44/262 (16%), Positives = 100/262 (38%), Gaps = 35/262 (13%) Query: 66 DVGQIAGYNNAMNVIYGQAAPKVSDLQ------ETLIGRFSSAFSALAETLDNQEEREKL 119 Q+ G + + +I + A DL+ ++ + SA ++A++ Q + +L Sbjct: 200 TADQMKGLTDKITLIDREKAQNQLDLETAQAALGSINEQLGSAGKSIADSATVQAYKGQL 259 Query: 120 TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQ 179 +++++ Y + A ++ Q I++ +N E+ + A + Q Sbjct: 260 ---ADLESRKASYIGKYTDEHP--AMKEINQQIEEAKSGLNAEI-NAIASQQAPSSNSAQ 313 Query: 180 DSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE-DITQDTLFLLGSEALE 238 L + + AL A Q T ++ + E I G ++ Sbjct: 314 QGLLADKFKN-----------EAALAVAQGKQSTLVELDKANEEAIKGLPEKERG--YIQ 360 Query: 239 SMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDI-HAYRYVMKPMLPIRRDSPKKAI 297 + + + + YQ +E KV ++ + + + V P LP + +P+K + Sbjct: 361 AKRDVDVAQ------DIYQMLST--RLEEAKVAEVMVPNEVQIVDPPTLPEKAIAPRKIL 412 Query: 298 TLILAVLLGGMVGAGIVLGRNA 319 ++ + +LG + G LG+ Sbjct: 413 IILGSAILGLIFGCLYTLGQFF 434 >UniRef50_Q65U41 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65U41_MANSM Length = 260 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 54/180 (30%), Gaps = 20/180 (11%) Query: 34 IIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVS---- 89 I++S + A G +AK WT + + +P + ++ Y + + K + Sbjct: 19 ILLSACIGGAAGYGSSYLAKNLWTVQSSLEKPALTELGNYYSLYSTYQLLNNEKANQDPT 78 Query: 90 -DLQETLIGRFSSAFSALAETLDNQEEREKLTIE---------------PSVKNQQLPLT 133 D+ S A + ++KLT + + Sbjct: 79 GDIFNRFKQLAGSYEHAKVFWENTDYYKQKLTDDSQHDSQLLDQLSREIKLLDTNAATTQ 138 Query: 134 VSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQK 193 +S + A+ L +YI + + +L + + + QK Sbjct: 139 LSLELDNPKRARELLTEYIDYTGLANRKNIYGELIVKWKTLFDQVNSAANLNVADTERQK 198 >UniRef50_B2JKP4 Exopolysaccharide transport protein family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JKP4_BURP8 Length = 744 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 68/210 (32%), Gaps = 16/210 (7%) Query: 112 NQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLA---QYIQQVDDKVNQELEKDLK 168 N+ R+K+ + + Q E +Y Q + +L + Sbjct: 270 NEYMRQKVQRTQEEAEKSIAF---LNQQLPELKAKLEQAEEEYNQFRSEHGAVDLGAEA- 325 Query: 169 DNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDT 228 + Q+ + + Q D R AL A Q+ + + + + Sbjct: 326 AALLQSTAQAQNRIAELR-QQRAQLDARYMPDNPAL-IATNGQLEEAEKALSELAVQTRR 383 Query: 229 LFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPI 288 L L L + + + N T++ + ++ KV + R + +P Sbjct: 384 LPPLEQSVLRLQREVQVDTNIYT--NLLNTKEQMRLAKAGKVSNA-----RLIDSAAVPE 436 Query: 289 RRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 PK+ + ++ L G VG+ VL R Sbjct: 437 GPIRPKRTLIVVAGSLTGIFVGSAYVLFRR 466 >UniRef50_C9LJ77 Chain length determinant protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LJ77_9BACT Length = 353 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 44/339 (12%), Positives = 116/339 (34%), Gaps = 43/339 (12%) Query: 20 LIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNV 79 L+ + L I I + ++L+IGY+ + S ++ P++ + ++ + Sbjct: 8 LLKVARLLLSKWKQIFIFCFIVVSLSIGYIMSIPRSYQSDVVML-PEIPSNSSLSSGLGS 66 Query: 80 IYGQAAPKVS--DLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYV 137 + A K+ D ++ + F + L + + P Q + L + Sbjct: 67 LASMAGVKLGNGDSEDAIYPEFYPKVVKTPDFLVALLNK---PVRPKGLKQDVSLFIYLT 123 Query: 138 GQTAEGAQMKLAQY-----------------IQQVDDKVNQELEKDLKDNIALGRKNLQD 180 L Q+ + + +K+ + L + + + Sbjct: 124 QHQKAPWWDSLFQWGGLGSKETPTNKIDPQRLTKAQEKLLKGLGASIVSFVDKRTNMVTI 183 Query: 181 SLRTQE--------VVAQEQKDLRIRQ---------IQEALQYANQAQVTKPQIQQTGED 223 ++ Q+ + + Q I ++ A + + +A + + Q Sbjct: 184 NVTMQDPEVAAQVATMVENQLQQYIANYRTSKARNDVKYAEKISQKA-LEDYKAAQKVYA 242 Query: 224 ITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMK 283 D L +++ + Y Q+ L + KV + + A+ + + Sbjct: 243 RFADANQDLVLTSVQQEETRLENEMQLAYNGYSQSVTQL-QLAQAKVQE-RMPAFTVLQQ 300 Query: 284 PMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 +PI+ +PK+ I + + +L + ++ ++A+R+ Sbjct: 301 ANVPIKPSAPKRMIFVFMMAVLSFSLSCLWIIIKSAMRD 339 >UniRef50_Q1YH82 Possible exopolysaccharide biosynthesis/transport protein n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YH82_MOBAS Length = 687 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 76/218 (34%), Gaps = 19/218 (8%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 Q+ + ID + + +W + II++ I + L + + +K+T+ + I D I Sbjct: 41 QDSNGSLIDPVHVFQSVWSARRLIILTTIFGLLLGVAFALSMPKKYTAYSQIFA-DPRDI 99 Query: 71 AGYNNAMN-----------VIYGQAAP-KVSDLQETLIG----RFSSAFSALAETLDNQE 114 N + +I Q A +DL ++ F+ E+L Sbjct: 100 KVVQNEVTPNGLPTEATLALIESQIAVINSNDLMAKIVEAADLTSDPEFNGQGESLLPSL 159 Query: 115 EREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKV-NQELEKDLKDNIAL 173 E LT + L + A G +I + + E +L +A Sbjct: 160 ESLGLTSPTIASTNERFLQTMENLREATGVSRDAKSFILNISVTTESPEKSAELSRLVAN 219 Query: 174 GRKNLQDSLRTQEV-VAQEQKDLRIRQIQEALQYANQA 210 + +++ A R+ +++E + A QA Sbjct: 220 TFIDHLAEVQSDTAGRATNALSSRLTELREKVSAAEQA 257 >UniRef50_Q39TL3 Lipopolysaccharide biosynthesis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TL3_GEOMG Length = 409 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 53/380 (13%), Positives = 120/380 (31%), Gaps = 71/380 (18%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M N+ L+D + + + A +A+ Y + +T+ + Sbjct: 2 MLHSENSTDDTRTSKPLFTLLDFAAVIIKHWRLTACITLAAALVAVIYTLMLPNLYTARS 61 Query: 61 IITQ---------PDVGQIAGYNNAMNVIYGQAAP--------KVSDLQETLIGRFSSAF 103 +I +GQ+AG + G + +++ LI RF Sbjct: 62 MILPLEDDREGVGAALGQLAGLAGVGRIGLGNPSKADVYLAMLNGETIRDPLIDRFR--- 118 Query: 104 SALAETLDNQEEREKL-----TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDK 158 L E + + E + +V + +T++ + A Y++++ Sbjct: 119 --LLEAYEAKYRTEAYGALDRNVAVTVGKKDGIITIAVDDRDPRRAAEMANAYVEELGRL 176 Query: 159 VNQ-------ELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEAL-----QY 206 N+ L+ +A R +L + + + K + + +A Q Sbjct: 177 ANRLNMASAGNDRMYLEKRLASARVDLAKAEDALKAFQSKNKAVSVSDQAKATIDGVAQL 236 Query: 207 ANQAQVTKPQIQQTGEDITQDTLFLLGSEA----LESMIKHE-------ATRPLVFS-PN 254 Q + Q+ T + + S+A L++ I + P V S P Sbjct: 237 RAQLAAQEVQLSAYRSQFTDSSQEVRTSKAAIGRLQAQIARLEGNGGGGSAIPSVGSMPQ 296 Query: 255 YYQTRQNLLDIESLKVDDL------------------DIHAYRYVMKPMLPIRRDSPKKA 296 Q Q L + K+ + D+ ++ + +P ++ P + Sbjct: 297 LGQ--QYLRLMRDFKIQETMVELLAKQYEVARMSEVKDVSPFQVLQVAKVPEKKSKPHRT 354 Query: 297 ITLILAVLLGGMVGAGIVLG 316 + +++A L + + Sbjct: 355 LIVLVAALTAFLCSIYLSFV 374 >UniRef50_UPI00016A48EE exopolysaccharide transport protein family n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A48EE Length = 744 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 52/257 (20%), Positives = 94/257 (36%), Gaps = 24/257 (9%) Query: 77 MNVIYGQAAPKVSDLQETL-IGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVS 135 +++ G + DL++ L I ++ TL + + + I + +Q + V Sbjct: 222 FDLVRGSRMDTIEDLRKQLRIQELGKQSGVISATLRSDDPVQLSAILNEIGDQYVRQNVD 281 Query: 136 YVGQTAEGAQMKLAQ---YIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQ 192 AE + LA +++ ++ L + L S+ Q + A++Q Sbjct: 282 RKAAQAENSLQFLASQEPKMKRDLEQAENRLNDYRNTHKVLDLTEEGKSILAQSLDAEQQ 341 Query: 193 KDLRIRQIQEALQ---------YANQAQVTKPQ--IQQTGEDITQDTLFLLGSEALESMI 241 ++ QE L A Q+ I + + I + +A+ Sbjct: 342 HFTLTQKRQELLTRFGPMHPGVVAIDEQIAGTLGYIGELTDQIKRMPTAQR--DAIRLQR 399 Query: 242 KHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLIL 301 + L Y R N+ + LK + + R V LP R PKK I +++ Sbjct: 400 DVQVNTDL-----YLALRNNIEQLRLLKAGKVG--SVRLVDAASLPERAVFPKKTIVVVV 452 Query: 302 AVLLGGMVGAGIVLGRN 318 A LLG VGAG R+ Sbjct: 453 ATLLGLFVGAGAAFVRD 469 >UniRef50_Q13NU9 Exopolysaccharide transport protein n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13NU9_BURXL Length = 746 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 91/248 (36%), Gaps = 24/248 (9%) Query: 88 VSDLQETL-IGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQM 146 V DLQE L I L+ TL+ ++ +I +V N+ + V+ A+ Sbjct: 238 VEDLQEDLKIEEKGKQSGILSVTLNGPNPKKTKSILDAVANEYVTQNVALKSAEAQQTIE 297 Query: 147 KLAQYIQQVDDKV-----------NQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDL 195 L + + Q+ ++ N++ +L + L + DS + Q + +L Sbjct: 298 FLDRQLPQLKSQLDDAEVKYNRFRNEKGTVNLSEEAKLILQQSVDSNTALLELQQRRLEL 357 Query: 196 RIRQIQEALQYA---NQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFS 252 R R +E Q K Q + G I+ G AL M L Sbjct: 358 RQRFTEEHPSVVALDKQIVAAKSQTESLGSRISGLPNLEQG--ALRLMRDVAVDTDLYTG 415 Query: 253 PNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAG 312 + Q L +++ KV ++ + PI PKKA+ + + V+LG + G Sbjct: 416 --LLNSAQQLRVLKAGKVGNVR--VVDFAQDSEEPI---KPKKALVIAMGVVLGAIFGVT 468 Query: 313 IVLGRNAL 320 R A Sbjct: 469 TAFVRKAF 476 >UniRef50_B2I037 ATPase n=12 Tax=Acinetobacter RepID=B2I037_ACIBC Length = 728 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 73/213 (34%), Gaps = 16/213 (7%) Query: 109 TLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLK 168 + N E R + + + + AE K Q Q V +E E L Sbjct: 265 SAQNIERRSAESAQTLKFLDEQLPDLKKQLDDAERQFNKFRQ--QYNTVDVTKESELYLT 322 Query: 169 DNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDT 228 +I L K + + E+ A+ + + + Q QI + + Q Sbjct: 323 QSITLETKKAELEQKQAEMAAKYTAEHPAMR-----EINGQLAAINKQIGELNSTLKQLP 377 Query: 229 LFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPI 288 L ++ + +Y Q R +I R V + P+ Sbjct: 378 DVQRQYLQLYREVEVKTQLYTALLNSYQQLRI---------AKAGEIGNVRIVDTAVEPV 428 Query: 289 RRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 PKK + LIL+V +GG +GA I L RN LR Sbjct: 429 EPIKPKKLLVLILSVFVGGFIGALIALLRNMLR 461 >UniRef50_B1KCB3 Exopolysaccharide transport protein family n=2 Tax=Burkholderia RepID=B1KCB3_BURCC Length = 740 Score = 51.7 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 93/266 (34%), Gaps = 38/266 (14%) Query: 66 DVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSA--FSALAETLDNQEEREKLTIEP 123 + I ++N+ V + +A + L +Q ER K Sbjct: 223 TLSTIEELRQSLNIAEKGKQSDVIGVTLDGSDPVKTAMILNTLGSEYVHQNERRK----- 277 Query: 124 SVKNQQLPLTVSY-VGQTAEG-AQMKLAQ-----Y-IQQVDDKVNQELEKDLKDNIALGR 175 +++ ++S+ Q E AQ++L++ Y +++E L+ ++ Sbjct: 278 ---SEEAERSISFLSAQLPELRAQLELSENRFNAYRATHGTLNLDEEATALLQRSVDAQS 334 Query: 176 KNLQDSLRTQEVVAQ-EQKDLRIRQIQEALQYANQ--AQVTKPQIQQTGEDITQDTLFLL 232 + + E++A+ + IR + L A + + + Sbjct: 335 RLTTLKQKRDELMARFTPEHPAIRALDAQLDTARAEIGGIEQRTRALPPVE--------- 385 Query: 233 GSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDS 292 + L + L N T++ L +++ KV ++ R V +P Sbjct: 386 -QDVLRLQRDVQVGTELYT--NLLNTQEQLRLVKAGKVGNV-----RLVDTAAVPEEPVR 437 Query: 293 PKKAITLILAVLLGGMVGAGIVLGRN 318 PK+ + ++ + + G ++GA + R Sbjct: 438 PKRLLVIVGSTVFGLLIGATVAFSRR 463 >UniRef50_D2QRK9 Lipopolysaccharide biosynthesis protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRK9_9SPHI Length = 362 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 49/367 (13%), Positives = 122/367 (33%), Gaps = 79/367 (21%) Query: 10 GQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQ 69 + D +I L D++ L + +++ IV + + Y +TS + + Sbjct: 11 NREEDEIEIRLSDIVQFLKDSRRRVLLGSIVGLIIGALYAFSKPNVYTSQVTVMP----E 66 Query: 70 IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQ- 128 + + + G A DL SA T+D I P + Sbjct: 67 LQAKAGGLGGLGGLAGLAGIDLN-----------SATGGTMDA--------IRPDLYPDV 107 Query: 129 --QLPLTVSYVGQ----TAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSL 182 +P + + Q A+M L ++I +V+ ++L + + + ++ Sbjct: 108 LKSIPFALYLLSQPVYSEKLQAKMTLQEFINRVNRSWIKDLFAGGSKDAENRKLDPKNFS 167 Query: 183 RTQEVVAQEQKDLRIRQIQEALQYANQAQV-------TKPQIQQTGEDITQDTL------ 229 + ++ +++ ++I Q + Y + + + P + T ++ + L Sbjct: 168 KAIQITKEQEDLVKIVQTNMSAAYDKKTGILTLAATESDPVVAATEVRLSLEYLTNYIVT 227 Query: 230 -----------------------FLLGSEALESM--------IKHEATRPLVFSPNYYQT 258 + AL S ++ +Y Sbjct: 228 YRTEKARKQVAFLTKRVSEAKGRYQSAEYALSSYRDRNRSLFLQTAKLEEQRLQADYLLE 287 Query: 259 RQNLLDIES-LKVDDLDIH----AYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGI 313 + ++ L+ + + ++ + P++P+R+ +PK+ ++ + G V I Sbjct: 288 QSVYNELSKQLEQAKIKVQEETPVFKVLEPPVVPLRKSAPKRTFIMLGFAIAGVFVTLII 347 Query: 314 VLGRNAL 320 +L + L Sbjct: 348 LLTKRLL 354 >UniRef50_A7JRK0 Lipopolysaccharide chain length determinant protein n=2 Tax=Mannheimia haemolytica RepID=A7JRK0_PASHA Length = 270 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 58/185 (31%), Gaps = 32/185 (17%) Query: 25 VQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQA 84 L+ + +I+ + G EKW TA QP + + Y + ++ + Sbjct: 2 KTLFYRLLVLILFAAIGAGAGYGLSYTQPEKWKVTAQFEQPTIPDLGNYYSLLSTYHFLN 61 Query: 85 APK------------VSDLQETLIGRFSSAFSALAETLDNQEER---------------- 116 + + +SA A L + + Sbjct: 62 SNSQEANSQTAQQQASEQVYAEFKRNLTSADLLQAYLLQTEAVKLKAQVAKKSPAVVAAE 121 Query: 117 --EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALG 174 E+ E + VS + + AE AQ LA +I V+ + +L DL + Sbjct: 122 LVEQFRFEKDMATSAD--NVSLIAENAEEAQKLLADFIPLVNTQARDKLNADLIAKWKVL 179 Query: 175 RKNLQ 179 + ++ Sbjct: 180 FQQIK 184 >UniRef50_C9PPK9 Lipopolysaccharide biosynthesis protein WzzE n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PPK9_9PAST Length = 282 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/206 (9%), Positives = 63/206 (30%), Gaps = 28/206 (13%) Query: 32 MTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDL 91 + I+I ++ A+A + K++W + A + P + Y + ++ + Sbjct: 20 VLILILTGLSAAIAYAASFLIKKEWRAEAYVGAPTANSLGNYYSLSSMYQFVSGKPTDTT 79 Query: 92 QETLI-GRFSSAFSALAETLDNQEEREKLTIEPSVKN----------------------- 127 + F + +D + + + +N Sbjct: 80 PMDFVYREFKKQAGSYDIVVDFWRNTDFYKQKQTGENVFDQQELERLANSLGFTPQQAIN 139 Query: 128 ---QQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDS-LR 183 +++ +S + + A L+ ++ V+ K + +L + ++ + Sbjct: 140 GLSEKIGDRISLTLGSPKQATELLSDFVDYVNLKTRSVVYNELIYRWKVLFDEVKKAGEL 199 Query: 184 TQEVVAQEQKDLRIRQIQEALQYANQ 209 + + + + Q L+ Sbjct: 200 NVGNMQKNNTYVSVEDWQGKLKLMQS 225 >UniRef50_B7RJK1 Protein-tyrosine kinase, putative n=3 Tax=Rhodobacteraceae RepID=B7RJK1_9RHOB Length = 716 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 56/147 (38%), Gaps = 8/147 (5%) Query: 1 MRVENNNVSG-QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLA-VAKEKWTS 58 M + N + Q D + ID ++ LWRGK I + +A+ LA Y VA + S Sbjct: 7 MNQSSQNFAPTQADDDDSIDFGAMVGTLWRGKWIIALVTAIAVGLAAYYAYKVAIPLYRS 66 Query: 59 TAIITQPDVGQ-IAGYNNAMNVIYGQAAPKVSDLQ----ETLIGRFSSAFSALAETLDNQ 113 TA++ + + G A ++++ L G+ + + E + Sbjct: 67 TAVVILETQQDKVVDLQAVVGGFSGDATAVNTEVEVLRSRGLAGKVVDRLNLI-EDPEFN 125 Query: 114 EEREKLTIEPSVKNQQLPLTVSYVGQT 140 K + S+K + L S T Sbjct: 126 ARLRKPGMIASLKARINGLISSDEAPT 152 >UniRef50_C0VIY7 Protein tyrosine kinase n=4 Tax=Acinetobacter RepID=C0VIY7_9GAMM Length = 740 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 40/169 (23%), Positives = 60/169 (35%), Gaps = 14/169 (8%) Query: 153 QQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQV 212 Q V +E E L +I L K ++ + ++ A+ + + A A + Sbjct: 318 QYNTVDVTKESELYLTQSITLETKKIELEQKQADIAAKYTAEHPAMREINAQITA----I 373 Query: 213 TKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDD 272 K QI + Q L ++ +Y Q R Sbjct: 374 KK-QIADLNSTLKQLPDLQRQYLQLYREVEVNTQLYTALLNSYQQLRI---------AKA 423 Query: 273 LDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 +I R V + P+ PKK LILA+ LGG +G I L RN LR Sbjct: 424 GEIGNVRIVDTAVEPVEPIKPKKLQILILAIFLGGFIGTLIALLRNMLR 472 Score = 41.3 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 +S + + IDL +L L I + V++++ A+ YL ++ A++ Sbjct: 13 MSQNTNTEDTIDLKELFFALLAQWKLIALCVMLSLVCALLYLRTTPNTYSVDALV 67 >UniRef50_A6TJR1 Lipopolysaccharide biosynthesis protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TJR1_ALKMQ Length = 398 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 47/385 (12%), Positives = 114/385 (29%), Gaps = 79/385 (20%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAV-AKEKWTSTAIITQPDVGQIAGYN 74 E+I L +L+ L + K II ++A+ + + + + ++ + + N Sbjct: 2 EEISLRELIETLLKQKKLIIGITMIAVLTTGLFSFFMLEPVYETRMVLMASNFTERLQPN 61 Query: 75 NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAET--------LDNQEEREKLTIEPSVK 126 +S + + +A L+ + E+L S++ Sbjct: 62 QLSGNGVEGMLESLSQYPAMTLDTYRQQVTAPRVMRATIEELGLEEDYDVERLARAISLE 121 Query: 127 N--QQLPLTVSYVGQTAEGAQMKLA----QYIQQVDDKVNQELEKDLK---DNIALGRKN 177 +T+ E A + + ++++ V +K + + + + + Sbjct: 122 TLQNTNLITIKMQHGDPEKAALIVNTVGEKFVEFVSEKAQEHASQSSQYVVSQMEVEEAQ 181 Query: 178 LQDSLRTQE---------VVAQEQKDLRIRQ-----------------IQEALQYANQAQ 211 L D+L Q + D R+ Q +Q A+Q A Sbjct: 182 LDDALVELREFLSQPRGVSELQMELDARLSQATSFKTQLTDLEIREPALQSAIQVAQAEG 241 Query: 212 VTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIE----- 266 T QI +Q L+ + + F + + + +++ Sbjct: 242 NTNSQIMINDNAGSQQITLESTETLLKIELAEVQSNIQSFRTQITEIQDEIEELQVELQD 301 Query: 267 ------------SLKVDDLDIHAYRY------------------VMKPMLPIRRDSPKKA 296 ++ ++ D +Y + + P+K Sbjct: 302 KKHQERLINQRVNIAENNYDAFVKKYEELRVAESSQIGDASITVISRAFPTTTPIGPRKT 361 Query: 297 ITLILAVLLGGMVGAGIVLGRNALR 321 + + +A +LG M+G + Sbjct: 362 LNVAIAGVLGVMIGVFAAFFIEYWK 386 >UniRef50_B8GTU6 Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTU6_THISH Length = 411 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 71/388 (18%), Positives = 130/388 (33%), Gaps = 88/388 (22%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 ++I LIDL L R + I +V+ ++ L I +L V + + + I +I Y Sbjct: 27 PDDEISLIDLWRTLVRRRSIIGFTVVGSLVLGIMFLIVKPDTYVFGSTI------EIGHY 80 Query: 74 NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLT 133 + V + L + AL +D E +L + + + L Sbjct: 81 PTEAGSRELASLDTVENALSKLQDGYIPE--ALRRYMDEGHEESRLRV-TARNPRGSNLV 137 Query: 134 VSYVGQTAEGAQMKL-------AQYI---QQVDDKVNQELEKDLK--------------- 168 V V T + + L Q I + + D Q+L+ L+ Sbjct: 138 VIEVKGTLDEGESILRVLNYASNQLIEDHRYLLDIQRQQLDSRLEQARLELAKYEDERMF 197 Query: 169 --------DNIALGRKNLQDSLRTQEVVA---------QEQKDLRIRQIQEALQYANQ-- 209 I + L + L+ QE+V Q + +I++I+ +++ A++ Sbjct: 198 RIQELERVRAIERTKLELSELLQQQELVESRIKRLDDMQRLLEQQIKEIRHSIEVASETR 257 Query: 210 ----AQVTKPQIQQTGEDITQDT------LFLLGS--------------EALESMIKHEA 245 A V P T I D L L + L+ +++ ++ Sbjct: 258 RAAVANVGDPANAMTLLMIDSDIQQNRNRLATLDERLHIGLPNEFDELQKRLDDILRAQS 317 Query: 246 TRPLVFSPNYYQ-TRQNLLDIESLKVDDLDIHAY----------RYVMKPMLPIRRDSPK 294 + R + S + + A R V +P + + P Sbjct: 318 NMKTEIEARESELERFRIDWERSTEAQRQTVRAVEARLNAARDTRVVTQPARSLEPEGPG 377 Query: 295 KAITLILAVLLGGMVGAGIVLGRNALRN 322 K+I L L++ LG M+G LRN Sbjct: 378 KSIILALSLFLGLMLGVFAAFFAEFLRN 405 >UniRef50_C9MSS5 Chain length determinant protein n=2 Tax=Prevotella RepID=C9MSS5_9BACT Length = 355 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 44/339 (12%), Positives = 104/339 (30%), Gaps = 45/339 (13%) Query: 18 IDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ------PDVGQIA 71 ID + +W+ KM + + I A Y+ ++S+ I P G + Sbjct: 10 IDYTAVFHAIWKKKMVYLTVLSFTILFASLYIFSLPRTYSSSTEIAPEVDSKTPGGGTLG 69 Query: 72 GYNNAMNVIYGQAAPKVSDLQETLIGRFSS------AFSALAETLDN------QEEREKL 119 + + + +T D+ + + Sbjct: 70 SLASTFGIDMSTLESSDAITPMLYPDLIDDNGFISMLLPIHVQTGDSTFKGTYYDYKRTA 129 Query: 120 TIEPSVKNQQLPLTVSYVGQTAEG---------AQMKLAQYIQQVDDKVNQEL------- 163 T P L + E L + + + + +++ Sbjct: 130 TKVPWWNKLANDLLTKISSKKPEEGKYEVGTPFNAYHLTKLDNSIIESIRKQIAIKVDKK 189 Query: 164 ------EKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVT-KPQ 216 + +D + ++ + + + D R ++ + ++A+ + + Q Sbjct: 190 TGAITINTEDQDPLIAKTIADSTRELLKDFITKYRTDKARRDVEYYKKLTDEAKSSYEHQ 249 Query: 217 IQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIH 276 + GE +T L S ++S + + NY Q + L + K+ + Sbjct: 250 RLKYGEFSDSNTDVSLPS--VQSKGEDMENEMQLRYNNYSQLKGQL-QLSLAKLRERT-P 305 Query: 277 AYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVL 315 + + +PI+ PK+ + L+ VL ++ VL Sbjct: 306 VFTQIKGAAVPIKPTGPKRMLFLLGTVLFSFILTTIYVL 344 >UniRef50_B3E8V9 Lipopolysaccharide biosynthesis protein n=4 Tax=Desulfuromonadales RepID=B3E8V9_GEOLS Length = 422 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 52/361 (14%), Positives = 113/361 (31%), Gaps = 57/361 (15%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD---------V 67 +I+L+DLL+ L + II V A+ +T+ +I + + Sbjct: 22 EINLLDLLLVLAKRWRMIIGVPFVVAAITAIITLFMPNIYTAKTMIIPSEDSSSGMGALM 81 Query: 68 GQIAGYNN--------AMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKL 119 Q+ G K +++ +I +F A+ N Sbjct: 82 AQLGGLVTMAGGPLGGKTTADLYVTMLKSETVKDPIIDKFKLMEKYEAKLRSNVYLTLDG 141 Query: 120 TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQ 179 ++ + +TVS+ + + A +Y+ Q+ Q +N K + Sbjct: 142 ATAINLGKKDGVITVSFSDEDPKLAAAIANEYVDQLGKLSAQLNMTGATNNRRFLEKQIT 201 Query: 180 D-----SLRTQEVVAQEQKDLRIRQIQEALQYAN-------QAQVTKPQIQQTGEDITQD 227 + S +E+ + K+ I +A Q V + ++ T + Sbjct: 202 ETKADLSKAEEELKIFQSKNKSISVPDQAKATIEGVAQLRAQLAVKEVELGTLQRQFTDN 261 Query: 228 TLFLLGSEALESMIKHE------ATRPLVFSPNY----YQTRQNLLDIESLKVDDL---- 273 + + +A + ++ + P + L + K+ + Sbjct: 262 SQEVKSVKAAVAQLRGQIASLEGKGNSSSAIPQLGAVPQLGQDYLRLMREFKIQEAVLEM 321 Query: 274 --------------DIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 D ++ + K +P R+ PK+A +ILA G + + N Sbjct: 322 LTKQYEMAQVSEAKDTAPFQLLEKAKVPERKSKPKRAQIVILAAFATGFLMVLLAFLLNF 381 Query: 320 L 320 + Sbjct: 382 V 382 >UniRef50_Q220Z3 Lipopolysaccharide biosynthesis n=6 Tax=Betaproteobacteria RepID=Q220Z3_RHOFD Length = 524 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 37/269 (13%), Positives = 87/269 (32%), Gaps = 22/269 (8%) Query: 22 DLLVQL-------WRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA-------IITQPDV 67 +L+ QL W+ + ++ A+ + + +K+ +TA I +P + Sbjct: 3 ELISQLATAARGMWKHRWLGLLVAWAVTAIGLFVVLSVPDKYEATARIFVDTQSILKPLM 62 Query: 68 GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKL--TIEPSV 125 +A N + + +S + R + +++ ++L T+E Sbjct: 63 SGLAVQPNVDQQVGMLSRTLISRPNVEKLVRMADLDLKTQSKSEHEALIDRLMKTLEIKN 122 Query: 126 KNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQ 185 + +SY + + A+ + + + + KD K + +Q + Sbjct: 123 VGRDNLYVLSYRDTSPDKAKRVVQSLVSIFVESSLGDSRKDSKTARRFIDEQIQTYVTKL 182 Query: 186 EVVAQEQKDLRIRQIQEALQYANQ---AQVTKPQIQQTGEDITQDTLFLLGSEALESMIK 242 E K R+R I+ LQ A+ A Q + ++ + + Sbjct: 183 EEAEARLKQFRLRNIE--LQNADGKDMAGQIGAVSSQLSQARLDLREAENARDSAKRQLD 240 Query: 243 HEATRPL-VFSPNYYQTRQNLLDIESLKV 270 E + + S + Q + Sbjct: 241 AEKDQNANITSRSLLQESAMQSSTPEIDA 269 >UniRef50_Q3K9H3 Tyrosine-protein kinase n=4 Tax=Pseudomonadaceae RepID=Q3K9H3_PSEPF Length = 740 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII-TQPDVGQ 69 + +D + IDL+ + L K I + + Y +A + + A++ +P Sbjct: 10 RENDQDSIDLLGIFGSLIDQKWLIGAFTGAFMMTGVAYAILATPVYLANALVQVEPKKND 69 Query: 70 IAGYNNAMNVIYGQAAP 86 + G+++ +++ GQ+ Sbjct: 70 MLGFSDLNSMLGGQSPS 86 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 86/242 (35%), Gaps = 37/242 (15%) Query: 113 QEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQ----YIQQVDDKVNQEL---EK 165 Q ++ L I K + + ++ A A L + Y+ Q + + E Sbjct: 230 QGYQDALDISEQGKESGI-IRLALASSDAAEAVKILNKIASLYVDQNVRRTSAEAAQSLA 288 Query: 166 DLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEAL---QYANQAQVTKPQIQQTGE 222 L+ + +++L + K + I +++ A + ++++ ++QQ Sbjct: 289 FLQSQLPQVKRDLAKASDALNAYQTHGKTVNISLETQSVLGQSVALETRISELKLQQAEM 348 Query: 223 D---ITQDTLFL-----LGS---------------EALESMIKHEATRPLVFSPNYYQTR 259 D Q + +G A + + + V S Y Q Sbjct: 349 DRKFTKQHPAYRALMTQIGELTQQQRSLEGKVQDLPATQQELLNLTRDVEVASQIYTQLL 408 Query: 260 QNLLDIESLKVDDLDIHAYRYVMKPMLPI-RRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 +++ ++ + R V + + PKKA+ +++A LG VG +VL R Sbjct: 409 NKSQELDIIRAGAVG--NVRLVDTADVDLTSPVKPKKALIVLIATFLGAFVGVALVLLRK 466 Query: 319 AL 320 +L Sbjct: 467 SL 468 >UniRef50_C9RRK0 Capsular exopolysaccharide family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRK0_FIBSS Length = 706 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 42/308 (13%), Positives = 105/308 (34%), Gaps = 49/308 (15%) Query: 28 WRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPK 87 + G +I + + +L A T+ A + + + + Sbjct: 182 FAGDTLVICVKSLTATVGQTFLLSAVHPQTAAAGLLK-------------GLGISEEGKN 228 Query: 88 VSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPL---TVSYVGQTAEGA 144 ++ +L R++ +A+ T+ N ++ + + + + L + V + A Sbjct: 229 SGIIRVSLEDRYADRVAAILNTIANTYLKQNIEMRSAEAKKTLSFLEEQLPGVKAKLDSA 288 Query: 145 QMKLAQY------IQQVDD-KVNQELEKDLKDNI---ALGRKNLQDSLRTQEVVAQEQKD 194 + KL + I + +V+ E + L+ + ++ R + + ++ Sbjct: 289 EQKLTSFRNSKGTIDLTGETRVHLEKDVSLQQRLIELEQKKQEALRLFRAEHPTVRTIEE 348 Query: 195 LRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPN 254 + +++ L ++ P +QQ E L + E L Sbjct: 349 QQ-SRLRRELAKQQRSAANLPVVQQ---------------EVLSLQEEVEVNNKL----- 387 Query: 255 YYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIV 314 Y N+ + ++ ++ R V + +P++ P + + + V ++G IV Sbjct: 388 YTNLLNNIQQLRVVQAGEVG--NVRIVDQAYVPLKPSKPNRKLVFVGVVFAFLLLGCLIV 445 Query: 315 LGRNALRN 322 R L N Sbjct: 446 YVRRMLSN 453 >UniRef50_A6BAV1 OtnB protein (Fragment) n=1 Tax=Vibrio parahaemolyticus AQ3810 RepID=A6BAV1_VIBPA Length = 175 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 26/69 (37%) Query: 26 QLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAA 85 LW GK +I + V A+ Y + + A++ + G + + G AA Sbjct: 1 ALWEGKWIVIATTFVIAVSAVLYALSLPNIYKADALLAPAESSNGGGLSKMAGQLGGLAA 60 Query: 86 PKVSDLQET 94 +L + Sbjct: 61 LAGVNLGAS 69 >UniRef50_C4FKG4 Lipopolysaccharide biosynthesis protein (Fragment) n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FKG4_9AQUI Length = 176 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 28/163 (17%), Positives = 55/163 (33%), Gaps = 19/163 (11%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 ++IDL +L +W + I V L + + +TS ++I Sbjct: 14 QEDEIDLFELFHIIWNNRFFIAKIVFGITILTAIISFILPKTYTSESVIVPVTKSSSGSG 73 Query: 74 NNAMNVIYG------QAAPKVSDL--QETLIGRFSSAFSALAETLDNQEE---------- 115 +A+ + G QA V + TL R + L E L +++ Sbjct: 74 LSAIAAMAGLPVGGDQATANVVAVLNSNTLRERVVKDLNLLDEILKDKKNEFKRPYQEAG 133 Query: 116 -REKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDD 157 R K I+ + + + + + + AQ I+ + Sbjct: 134 IRLKNNIKINEDKKNGTIKIEVDWKDPDKAQKINESIIKNLRQ 176 >UniRef50_Q97SJ6 Capsular polysaccharide biosynthesis protein cpsC n=114 Tax=Streptococcus RepID=CPSC1_STRPN Length = 230 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 2/144 (1%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYL-AVAKEKWTSTAIITQPDVGQIAGYNN 75 +ID+ L+ LW+ K+ I+I +V A A Y + K ++TST I + Q Sbjct: 8 EIDVFQLVKSLWKRKLMILIVALVTGAGAFAYSTFIVKPEYTSTTRIYVVNRNQ-GDKPG 66 Query: 76 AMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVS 135 N V D +E ++ + LD + I+ +V +++S Sbjct: 67 LTNQDLQAGTYLVKDYREIILSQDVLEEVVSDLKLDLTPKGLANKIKVTVPVDTRIVSIS 126 Query: 136 YVGQTAEGAQMKLAQYIQQVDDKV 159 + E A + K+ Sbjct: 127 VNDRVPEEASRIANSLREVAAQKI 150 >UniRef50_Q9CNG7 Putative uncharacterized protein n=1 Tax=Pasteurella multocida RepID=Q9CNG7_PASMU Length = 277 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 47/301 (15%), Positives = 98/301 (32%), Gaps = 83/301 (27%) Query: 33 TIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQ 92 I+ + ++ +A G + + W + A ++ PD+ + Y A++ Y K + Q Sbjct: 20 IILGTTLLGAIVAYGGSYLKSKTWLAEAHVSAPDIALLGNYY-ALSSTYQFIKNKENQRQ 78 Query: 93 ET------LIGRFSSAFSALAETLDNQEEREKLTIE-----------------PSVKNQQ 129 ET + + S + + ++K T E S + Sbjct: 79 ETEIVYQEFLKQLMSEEMIRRFWENTEYYKQKQTGEDHIDLALLEKLTKAIKFKSAQTLD 138 Query: 130 LPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVA 189 + +VS + + A L+ +I QV+ + + + +L + + ++ + Sbjct: 139 VADSVSLALENPKLATELLSSFIDQVNVETRKIVYSNLISQWKVLFEQVKKA-------- 190 Query: 190 QEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPL 249 T F LG A +++ + Sbjct: 191 --------------------------------------TEFNLGKNAQSALVSEDWNG-- 210 Query: 250 VFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMV 309 L + S+ D AYRY+ KP PI + SP + + L+G ++ Sbjct: 211 -----------KLQMMRSVSPLDEQFSAYRYLKKPTQPIMQRSPNRKCWASVGALIGFIL 259 Query: 310 G 310 Sbjct: 260 S 260 >UniRef50_B1M5X9 Lipopolysaccharide biosynthesis protein n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1M5X9_METRJ Length = 785 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/182 (12%), Positives = 57/182 (31%), Gaps = 27/182 (14%) Query: 147 KLAQYIQQVDDKVNQELEKDLKDNI---ALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEA 203 QY+ V + DLK + + +Q ++ + + + + + Sbjct: 327 LRRQYVDLV------QRADDLKRRLGPDHEAVQAIQRDIQAAKQSLRTELERLAVSLDHD 380 Query: 204 LQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLL 263 + A + + + + TL + + + A N Q Sbjct: 381 YEVAKA---REDSMTAAFDALISKTLIMSNARVKAKELDRTAETYDQIYTNLLQR----- 432 Query: 264 DIESLKVDDLDIHAY-----RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 +D ++ +Y + +P +P+ ++ ++L +L+G G R+ Sbjct: 433 -----YIDAVNQQSYPQPSAHVITPATVPESPSAPRGSLIMLLGLLVGTGFGVSGAFARH 487 Query: 319 AL 320 Sbjct: 488 WF 489 >UniRef50_B8CL31 Chain length regulator (Capsular polysaccharide biosynthesis) n=53 Tax=Gammaproteobacteria RepID=B8CL31_SHEPW Length = 736 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 22/53 (41%) Query: 10 GQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 Q++ IDL L L + II + + + Y +A + + A+I Sbjct: 22 PQSNSNGDIDLGKLFGILLDARWLIIAVTSLFTTIGVIYALLATPVYKADALI 74 Score = 40.5 bits (93), Expect = 0.089, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%) Query: 255 YYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIV 314 Y Q + ++ LK + R + K + PKK + ++LA LLG M+ +V Sbjct: 400 YIQLLNKVQELSILKAGTVG--NVRILDKAQSYSQAIKPKKPLIVVLATLLGAMLAIAVV 457 Query: 315 LGRNAL 320 L + AL Sbjct: 458 LVKAAL 463 >UniRef50_O52788 Tyrosine-protein kinase ptk n=4 Tax=Acinetobacter RepID=PTK_ACIJO Length = 733 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 61/170 (35%), Gaps = 14/170 (8%) Query: 153 QQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQV 212 Q V +E E L ++ L + Q + E A+ + + + A Q Sbjct: 309 QYNTVDVTKESELFLTQSVTLETQKAQLEQQVAEAGAKYTSEHPVMKQMNA-----QLGA 363 Query: 213 TKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDD 272 +I + + + L ++ + +Y Q R Sbjct: 364 INKKIGELNATLKELPDLQRRYLQLYREVEVKQQLYTALLNSYQQLRI---------AKA 414 Query: 273 LDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 +I R V + PI +PKK LIL++ LGG +G + L RN +R+ Sbjct: 415 GEIGNVRIVDTAVEPIEPIAPKKLQILILSIFLGGFLGTLLALLRNMMRS 464 >UniRef50_B5ZNF2 Lipopolysaccharide biosynthesis protein n=8 Tax=Rhizobium RepID=B5ZNF2_RHILW Length = 588 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 55/325 (16%), Positives = 106/325 (32%), Gaps = 29/325 (8%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKW-TSTAIITQPDVGQIAGY 73 + L D+L L + I+ + + +A YL A + ST ++ P V Sbjct: 24 NSPLTLRDMLFFLKMRWLWILATTFAFLVIAGSYLLTAAPTYVASTQLVIFPQVN----- 78 Query: 74 NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV--KNQQLP 131 ++ + + A L+ I R S LD + + + +PS+ K++ Sbjct: 79 SSEAQRAFAEDAFIEGQLE---IARSSDVVDGTVRALDLDSDPDFVDWKPSLLDKSKDWL 135 Query: 132 LTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEK----DLKDNIALGRKNLQDSLRTQEV 187 L VS T + A A ++L L++ +AL R + Sbjct: 136 LGVSAQVDTGQEAAGMRASDTPSRPRTEQEQLHDLAIATLQNMMALRRIGNSTIIEISAA 195 Query: 188 VAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTG---EDITQDTLFLLGSEALESMIKHE 244 + QK + I + +Q E ++ L ++A ++ Sbjct: 196 ASTPQKAVAIADTLARQYIQKNIAMKADSSRQYSDWLEKFVREQQRGL-ADASSALNTFN 254 Query: 245 ATRPLVFSPNYYQ------TRQNLLDIESLKVDDLDI----HAYRYVMKPMLPIRRDSPK 294 + F Q + L I + + LP+ + P+ Sbjct: 255 SNPRDQFKLAELQSATDARRTLYESTLTQLTEAKQRITYPVSDATIISRATLPLSKARPR 314 Query: 295 KAITLILAVLLGGMVGAGIVLGRNA 319 + L A +G VG + + R+A Sbjct: 315 STLILAFAGAVGLGVGLALAMVRHA 339 >UniRef50_C6BDG9 Lipopolysaccharide biosynthesis protein n=1 Tax=Ralstonia pickettii 12D RepID=C6BDG9_RALP1 Length = 266 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 49/298 (16%), Positives = 99/298 (33%), Gaps = 46/298 (15%) Query: 29 RGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKV 88 + I+++ V +A+ + KWT + +GQ+A + A + ++ + Sbjct: 9 KSAKVILLTTAVGAVIAVALFSFQHPKWTGRMTV---QIGQVANPSGAADGKLIESQSTL 65 Query: 89 SDLQETLIGRFSSAFSAL-----AETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEG 143 +D T R + +E D+ + L P+ + + VS G + E Sbjct: 66 TDRCNTPTFRSEILKNLGLPAPESENEDSALIFDSLRATPAKGPDLINIQVS--GSSREQ 123 Query: 144 AQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEA 203 A L + + + ++ + + L +L + Sbjct: 124 AFKALETAFNALATQ-HDKVYAPAVNRMKAESAELSANLSE---------------AERD 167 Query: 204 LQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLL 263 Q A A + + + T LF + + + I Q +Q L Sbjct: 168 YQRAYAA------LNSSTREPTAQNLF---TTNVVAQIGIRIQL-------LRQAKQRLD 211 Query: 264 DIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 D + D+ + R + +P+R SP K + +G ++G I L R R Sbjct: 212 D----SLADVRTYPTRVLGGYYVPLRPSSPGKTLYGAAGACIGLILGFLIALARKMRR 265 >UniRef50_Q4JZ56 Capsular polysaccharide biosynthesis protein Wzd n=1 Tax=Streptococcus pneumoniae RepID=Q4JZ56_STRPN Length = 226 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 5/156 (3%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIG-YLAVAKEKWTSTAIITQPDVGQ 69 N+ I L DLL LW K I+ V ++ Y + +TS I G Sbjct: 1 MNNRIVDISLFDLLNVLWLRKWIIVFVSFVFGCISFLYYQFFVPKTYTSDTRIYVVSKGD 60 Query: 70 IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQ 129 +NA + D +E ++ + L++ E I+ S+ + Sbjct: 61 NKNLSNA---DLQAGSALTKDYKEIILSDEVLEETISDLKLESTLESLASKIKISIPAET 117 Query: 130 LPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEK 165 +++S ++ A I++V +E+ + Sbjct: 118 RIISISVTNTNSDEAARIANG-IRKVAALKIKEVTQ 152 >UniRef50_Q489D4 Tyrosine-protein kinase n=7 Tax=Gammaproteobacteria RepID=Q489D4_COLP3 Length = 759 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 7/82 (8%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 +R + N + N +IDL+ L L K+ I+ + + I + + +TA Sbjct: 12 VRNQQGNNTSNNAPANEIDLMALFGALIDRKIFIVSITTLFAVIGIAIAIFSTPIYKATA 71 Query: 61 II-------TQPDVGQIAGYNN 75 +I + P + +AG Sbjct: 72 MIQVEESGGSVPGLDDMAGMFE 93 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 93/238 (39%), Gaps = 37/238 (15%) Query: 118 KLTIEPSVKNQQLPL-TVSYVGQTAEGAQMKLAQ----YIQQVDDKVNQELEKDLKDNIA 172 + I S K + + +S+ +T E A+ L + Y+ + D+ + E +K L D + Sbjct: 245 QTAIGASEKGKDSGIVNLSFQHETPEYAEGVLNKTAEIYVLRNVDRNSAEAKKSL-DFLE 303 Query: 173 LGRKNLQDSLRTQEVV----AQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDT 228 + ++ L + E + ++Q+ + I ++ ++ + + + Sbjct: 304 VQLPEIKKQLESSEALFNDYQRDQQSVNIT-LETQGVLEQIVELDTKLQELDLKRLAMSR 362 Query: 229 LFLLGSEALE---SMIKHEATRPLVF---SPNYYQTRQNLLDIES-------------LK 269 +F + I+ + N + +Q LL + K Sbjct: 363 MFKRNHPNYQGIVEQIEAVQKQRDGLAGKISNLPEMQQKLLRLTRDVEVGNEIYMMLLGK 422 Query: 270 VDDLDIH------AYRYVMKPML-PIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 V +LDI R + + I+ PKKA+ +++A L+GGM+ IVL + AL Sbjct: 423 VQELDIVRAGTVGNVRIIDVAEVNTIKPVKPKKALIVVMATLVGGMLAIAIVLVQKAL 480 >UniRef50_D2RIR1 Lipopolysaccharide biosynthesis protein n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RIR1_ACIFE Length = 482 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 44/273 (16%), Positives = 99/273 (36%), Gaps = 29/273 (10%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI-AGYNN 75 +IDL +L + + TI + LA+ YL + + STA++ + + Sbjct: 5 EIDLRELWQIVRTNQKTIAKITGGFLGLAVAYLLIVPNTYQSTALLRIKQERGLSSSIME 64 Query: 76 AMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEERE-------KLTIEPSVKNQ 128 + + Q + + ++ + +T + ++ + K I Sbjct: 65 QLPIGNAQLTKQQMNTNAEILKSRHVVIPVIEQTEEEKDGKYPRYEDYVKSHIVTKPYKD 124 Query: 129 QLPLTVSYVGQTAEGAQM----KLAQYIQQVDDKVNQEL---EKDLKDNIALGRKNLQDS 181 L V G++ E AQ + ++ ++ + E + L+ + +K L D+ Sbjct: 125 TEILEVDVTGKSPEQAQEANQLLVQGFLDRLAQLSHAESSATREFLEQRVKSSKKELDDA 184 Query: 182 LRTQEVVAQEQK----DLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEAL 237 + + K D +++ + E + ++A+ +T + LGS Sbjct: 185 ETKLKNYQVKHKIFSTDNQMKSLAERITDLDKAKAQNKLDMETAQA-------ALGSIND 237 Query: 238 ESMIKHEATRPLVFSPNYYQTRQNLLDIESLKV 270 + A SP+ Q + L+D+E+ K Sbjct: 238 QLAGAGAALAD---SPSIQQAKNKLVDLETQKA 267 >UniRef50_Q21Z35 Lipopolysaccharide biosynthesis n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21Z35_RHOFD Length = 388 Score = 49.0 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 44/354 (12%), Positives = 108/354 (30%), Gaps = 46/354 (12%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 + ++I L+DLL + ++++ + A LA+G +T+T P Q A Sbjct: 10 EDDEISLLDLLQVVADNLRLLVLAPLTAGLLALGISFAIAPTFTATTKFMPPQQQQSAAA 69 Query: 74 NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAET---LDNQEEREKLTIEPSVKNQQL 130 + ++ + + ++ + + + +D + E+ + + Sbjct: 70 SMLSSLGALGGLAGAATGLKNPADQYVAFLKSRSVQDVLIDRFKLMERYESKLKTDARTT 129 Query: 131 PLTVSYVGQTAEG-------------AQMKLAQYI-------QQVDDKVNQELEKDLKDN 170 VS + +G A Y+ ++ Q+ + Sbjct: 130 LEGVSKIASGKDGLITIDVDDKDPAFAAQLANAYVEELGRLLDRLAVTEAQQRRVFFEKQ 189 Query: 171 IALGRKNLQDSLRTQEVVAQEQKDLR--------IRQIQEAL--QYANQAQVTKPQIQQT 220 + + NL + + L+ + +++ + Q A + + Sbjct: 190 LTNAKDNLIKAEQALGASGVNSSVLKSTGAAVEAVARLRAQITGQEVKLASMRGYLTESA 249 Query: 221 G--EDITQDTLFLLGSEALESMIK----------HEATRPLVFSPNYYQTRQNLLDIESL 268 + + L G A + R + ++ ++ + Sbjct: 250 PDFKQAQTELSALRGQLARAEQSEPATDSASSDYIAKFRDFKYYETLFELFAKQYEMARI 309 Query: 269 KVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 + + + + P R+ PKKA+ ++ L G V R ALR Sbjct: 310 D-ESREGAVIQVLDAAQPPERKSKPKKALIALMTTLAVGFALLLFVFIRQALRG 362 >UniRef50_A6UI93 Lipopolysaccharide biosynthesis protein n=2 Tax=Sinorhizobium RepID=A6UI93_SINMW Length = 662 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 56/344 (16%), Positives = 111/344 (32%), Gaps = 45/344 (13%) Query: 3 VENNNVSGQNHDPEQID-----------LIDLLVQLWRGKMTIIISVIVAIALAIGYLAV 51 V + ++S + H E +D L DL + R + + V L+ Sbjct: 5 VPDGSLSARAHHRETVDFAAQQGGATVGLFDLWAIVKRRFWFLASIIFVCTLLSAIASFS 64 Query: 52 AKEKWTSTAII------TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQET---LIGRF--- 99 + +T+++ + +P A + + + V ++ ++ R Sbjct: 65 IPKSYTASSEVVLERKDVRPFATDAALTSIDRDRSAAETEMDVLQSRKFAGRIVDRLELV 124 Query: 100 -SSAFSALAETLDNQEEREKLTIEPSVKNQQLPLT-------VSYVGQTAEGAQMKLAQY 151 F+ A D ++ L + + T + A A L+Q+ Sbjct: 125 NDPTFNPYAPGGDKSSDQGLLRYVQDLIGVRRASTSARVIPDIKTQRDHAISA--LLSQF 182 Query: 152 -IQQVDDK-VNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQ 209 + + + + + + +A N SL E + ++D R+ Q AL Sbjct: 183 EVSRTGESLAVRLIVTNQNPKLAQQIANTIASLYV-EASLEFKQDERVADKQRALNTGGA 241 Query: 210 -AQVTKPQIQQTGEDITQDTLFLLGSEA-LESMIKHEATRPLVFSPNYYQTRQNLLD--- 264 A + + Q + + LL S A L + + + R + D Sbjct: 242 VAFLRQSMTQPLLITLRNEEARLLQSRAELAAKYGKNHPQMIDADSQIAGIRSMIEDEVQ 301 Query: 265 --IESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLG 306 + L+ + L A R V LP PK + + A L G Sbjct: 302 RILSDLEAESLKPSA-RIVSTAELPNSPSFPKPGLIIP-AALAG 343 >UniRef50_Q390Y9 Exopolysaccharide transport protein n=30 Tax=Burkholderia RepID=Q390Y9_BURS3 Length = 764 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 12/112 (10%), Positives = 38/112 (33%), Gaps = 8/112 (7%) Query: 3 VENNNVSGQNHDP-EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAI 61 + + ++HD ++DL ++ L + I ++ + Y +A ++ + + Sbjct: 1 MTSPVSRERSHDRGAELDLAGVVDVLAAQRWLIALTTAACVGAGTLYAFLAPPQYQADIL 60 Query: 62 I-------TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSAL 106 + T + ++ ++ AA ++ R + Sbjct: 61 LQVEDSGDTSAAKSMLGDVSSLFDIKSSAAAEAQILASRLVVTRAVDELRSY 112 >UniRef50_C5BJM9 Putative OtnB protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BJM9_TERTT Length = 295 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 29/243 (11%), Positives = 79/243 (32%), Gaps = 37/243 (15%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAI---------IT 63 PE + L+D+ LWR K +++ + V + + K+T+ + Sbjct: 16 SVPESLHLVDIGGALWRAKWVLLVVIAVFVGAFAVLAMITPVKYTAEVVVAEANAVARTD 75 Query: 64 QPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIG-------RFSSAFSALAET------- 109 + + A D I + ++A + Sbjct: 76 PGSDSAVPDIGVDLPSNEALAMITSRDFINRFIEDNNLLPVLYRGQWNAQTQNWKLPAEA 135 Query: 110 ---LDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKD 166 + + ++ + + +S E A + + +V++ + ++ Sbjct: 136 PTLWQAYKRFSRRVLDVGKDAESGLIRISVSFSQPELAAEWANKIVAEVNEVLRANAIRE 195 Query: 167 LKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQI---------QEALQYANQAQV-TKPQ 216 ++ +A + LQ + + ++ A + ++ ++ Q A + + A V +P Sbjct: 196 AEETLAYLNQELQRT-ASMDLKASLNELVKAQKARVVAANVHKQYAFRIVDPAVVPEEPA 254 Query: 217 IQQ 219 I + Sbjct: 255 IPK 257 >UniRef50_C5S436 Putative uncharacterized protein n=2 Tax=Actinobacillus minor RepID=C5S436_9PAST Length = 256 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 30/238 (12%), Positives = 77/238 (32%), Gaps = 32/238 (13%) Query: 27 LWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAP 86 ++R I+ V + +W ++A P ++ Y + + + Sbjct: 1 MFRKLFATILVTAVGAGVGFAGAKFQPTQWQASAQFEHPQTAELGNYLTLFSTYHLISGD 60 Query: 87 KVS-DLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKN------------------ 127 + D+ + ++++ + + +QE+ + ++ Sbjct: 61 TAAADISKMEAKAAEASYTEFKKNIQSQEKLAQFLTNSALVKAQAKIEGISEQAMVQQLS 120 Query: 128 --------QQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQ 179 P T+S + + A +Y++ V+ + L DL + ++ Sbjct: 121 KHFQFTSGNNQPDTLSLTSFSTQEADNLFGEYLRYVNTQARNTLNNDLIAKWKSLFQQVK 180 Query: 180 DSLRTQEVVAQEQKD---LRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGS 234 + + V+ E K ++ + + L A P I + + TLF G+ Sbjct: 181 SAADAKIDVSWENKLKMMSSVQPLDDKLVAFRFA--KAPAITAAPKPYIEWTLFGAGA 236 >UniRef50_C0BRP2 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BRP2_9BIFI Length = 506 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 64/164 (39%), Gaps = 4/164 (2%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV 67 V + + + I L+DL + + + II+ +V A Y +A K+++TA + Sbjct: 21 VESNDTEDDGITLMDLFRIVHKHLLVGIITFVVVFAAVCAYTFLAPPKYSATAQVFA-TY 79 Query: 68 GQIAGYNNAMNVIYGQAAPKVSDLQET-LIGRFSSAFSALAETLDNQEEREKLTIEPSVK 126 + +N ++ I + + +Q + S + + L L + +V Sbjct: 80 SDSSVQDNNISNINSASTYITNQIQSYPTLATTESVLKPVIDDLGLDTTVANLAGQLTVT 139 Query: 127 NQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDN 170 N V+ +T + Q + V + ++ +EK L + Sbjct: 140 NPTNTAFVNITAETGDAKQ--ASDIANSVAESLSNVVEKSLYAS 181 >UniRef50_Q72WQ0 Chain length determinant family protein n=4 Tax=Desulfovibrio vulgaris RepID=Q72WQ0_DESVH Length = 500 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 67/177 (37%), Gaps = 18/177 (10%) Query: 141 AEGAQM-KLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQ 199 E A L Y Q D V + E D G + + Q + + + I + Sbjct: 258 KEAAYKALLGTYTAQHPDVVRAKAELDALRASGGGGGGRKGGVDYQRIKVELESLNEIER 317 Query: 200 IQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTR 259 IQ+ L + K +Q+ T+ L+++ + L++ TR Sbjct: 318 IQQEL-----IEKDKRLLQELPAVQTE----------LQALQQARKNETLIYEQ--LVTR 360 Query: 260 QNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLG 316 ++ + R + +LPIR +P + + ++ +LLGG +GAG V+ Sbjct: 361 YGQSEVSKQMELQDKAVSLRIIDPAILPIRPSTPNRPLIMLAGLLLGGAIGAGWVIL 417 >UniRef50_A6F1J4 Lipopolysaccharide biosynthesis n=1 Tax=Marinobacter algicola DG893 RepID=A6F1J4_9ALTE Length = 252 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 41/306 (13%), Positives = 86/306 (28%), Gaps = 76/306 (24%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN 74 ++I L+DL + + + I I Y EK+ +T + + +G Sbjct: 13 DDEISLVDLAATFLKRRRVFYVVFIAITLAGIAYAIFTPEKYE---YVTLAKLAEKSG-- 67 Query: 75 NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTV 134 + + +++L + + F A N+ LP V Sbjct: 68 ---GEYIEEPSTVIAELDSLWVPDLQAKFHA-------------------ENNRSLPFGV 105 Query: 135 SYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKD 194 E + ++ E + + L + LR+Q+ A Sbjct: 106 --TANNPEDTGLV----------RIVSEASASAGTMVEQAHRELVERLRSQQEQAVSALR 153 Query: 195 LRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPN 254 + + Q +L+S I+ Sbjct: 154 KSLER-----QIV----------------------------SLDSTIEMLEGGQDTGDAI 180 Query: 255 YYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIV 314 + L SL+ D + + ++ P +++ ++LA LLG M G + Sbjct: 181 ASAVEKQL----SLEADLESLAPFEALVVSRQSGEHTGPARSLVIVLAGLLGLMAGVFLA 236 Query: 315 LGRNAL 320 + Sbjct: 237 FFAEFI 242 >UniRef50_D2PZ20 Lipopolysaccharide biosynthesis protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PZ20_9ACTO Length = 540 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 72/213 (33%), Gaps = 25/213 (11%) Query: 21 IDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII-----TQPDVGQIAGYNN 75 D L R K I+ V++ IA A + V ++WT+++ + P + + Sbjct: 9 RDTAQALLRHKWLILGCVLLGIAGAAVFSLVQTQRWTASSQVVIGPAVPPAL--VGKLPT 66 Query: 76 AMNVIYGQAAPKVSDLQETLIG---RFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPL 132 + ++ Q ++ S +L ++ + ++ Sbjct: 67 GADKTGPLGMDLPAETQARVMSSPALLRSVAKSLGMPTSDESAQSLASVTRVKAVTDNAY 126 Query: 133 TVSYVGQTAEGAQMKLAQ----YIQQVDDKVNQELE------KDLKDNIALGRKNLQDSL 182 ++ G TA+ A + Y+ Q +++ L +D A + L + Sbjct: 127 LITIDGPTADEAVRRANAIGRIYLAQRNNEAKALLTTLAGQAQDRSRTAAAQSRTLVSQI 186 Query: 183 RTQEVVAQEQ-----KDLRIRQIQEALQYANQA 210 Q +D R+ EA Q A++A Sbjct: 187 SEAIARGDTQTAAALRDQRVGLATEARQAADEA 219 >UniRef50_B6C223 Chain length determinant protein n=1 Tax=Nitrosococcus oceani AFC27 RepID=B6C223_9GAMM Length = 285 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 31/219 (14%), Positives = 64/219 (29%), Gaps = 39/219 (17%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT----QP--- 65 HD ++I+L+DL L R K T+I+ ++ I + + + + P Sbjct: 40 HDEDEINLLDLWQILVRRKWTVIVFFLIVTTAGITASFLMTPIYRAGVTLLIDREPPKVV 99 Query: 66 DVGQIAG----------YNNAMNVIYGQAAPK---------------VSDLQETLIGRFS 100 D +IA Y ++ ++ K V S Sbjct: 100 DYQEIAPVESPASREDFYQTQYGLLKSRSLAKQVFEELDLAHHPVFAVEQKPSFWSRLMS 159 Query: 101 SAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKL----AQYIQQVD 156 + + ER + I + + Y E + + +I Sbjct: 160 KEEETGGQEKEKLIERFQEEITVEPVRNSRLVKIYYDSPDPELSAQVVETLGQAFITANL 219 Query: 157 DK---VNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQ 192 ++ LKD + + L+++ + A Sbjct: 220 ERRYDATAYARDFLKDRLLQVKARLEETEQKLVEYANNH 258 >UniRef50_Q84GX2 Orf41 n=3 Tax=Photorhabdus RepID=Q84GX2_PHOLU Length = 715 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 39/267 (14%), Positives = 99/267 (37%), Gaps = 18/267 (6%) Query: 58 STAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEERE 117 S ++ + +G I G A+ V + + L+ R + ++ +++ ++ Sbjct: 198 SFTLVKRGQLGVIRGLQQALRVKEKGNSTGIISLEMEGDDR--ARIKSILDSIGKNYLQQ 255 Query: 118 KLTIEPSVKNQQLPLTVSYVGQTAEG---AQMKLAQYIQQVDDKVNQELEKDLKDNIALG 174 +T + L +++ + ++ L QY +Q ++ + +L + K + Sbjct: 256 NVTRKMEEAESSLNFLKNHLPKVKIELNRSEELLNQY-RQANESI--DLSLEAKSALET- 311 Query: 175 RKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGS 234 ++ + K+ ++Q+ A A + K + + ++ L Sbjct: 312 LVQIEKQINELTF-----KEAELQQLYTKQHPAYVALLDKRKTLVDTKKELNQSIKRLPK 366 Query: 235 EALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPK 294 + I V Y Q ++ LK + R + + ++ PK Sbjct: 367 T--QQEILRLTRDVQVGQEIYVQLLNKQQELNILKAGTVG--NVRIIDEAIVENSAVKPK 422 Query: 295 KAITLILAVLLGGMVGAGIVLGRNALR 321 K++ ++ ++LG ++ AG+V R R Sbjct: 423 KSLIIVSMMVLGFILSAGLVCIRVMFR 449 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 35/81 (43%), Gaps = 8/81 (9%) Query: 3 VENNNVSGQNH-DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAI 61 + ++ S H D ++IDL LL L+ + I ++ + + Y +A + + ++ Sbjct: 1 MTTSDKSSHTHTDSDEIDLGRLLSALFDYRWVIGGITLLFTVIGLCYSLIATPIYKANSL 60 Query: 62 I-------TQPDVGQIAGYNN 75 + P +G +A + Sbjct: 61 LQVEKRSRVLPLIGDMADMLS 81 >UniRef50_A0NMI4 Probable succinoglycan transport protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NMI4_9RHOB Length = 832 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 86/222 (38%), Gaps = 15/222 (6%) Query: 106 LAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLA-QYIQQVDDKVNQELE 164 LAET + + E K + ++ G + E A L IQ++ ++ E++ Sbjct: 247 LAETSTAYSDAQSAKAESQAKADLIRELLN-SGASLETASDVLNSALIQRLRER-QVEIQ 304 Query: 165 KDLKD-NIAL-----GRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQ 218 ++ + +I L K LQ L + + + ++ ++ + A+Q + + Sbjct: 305 SNIAELSITLLPNHPQLKALQSQLGDYDRQLRSEARKILQGLENDAKVADQ------RAK 358 Query: 219 QTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAY 278 GE + + S A ++ + + Q + + +S + Sbjct: 359 ALGERLDELKTAAAKSNADQARLAELERGANAKAAQLDQLLLSYQEADSRLRAQVLPADA 418 Query: 279 RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 R + + +P+ SPK + I+A L+ ++G VL R L Sbjct: 419 RIISRASVPVEPASPKILASTIIAALVTFILGCAFVLMREFL 460 >UniRef50_C6BLZ1 Putative uncharacterized protein n=2 Tax=Ralstonia pickettii RepID=C6BLZ1_RALP1 Length = 412 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 90/278 (32%), Gaps = 24/278 (8%) Query: 19 DLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMN 78 DL LL++ W + + + + A +++S + P + A YN Sbjct: 18 DLKGLLLRCWELRRKVAVFAVFFSVACFALFFWAGRQYSSEGFMRAP--RKFAEYNAQKA 75 Query: 79 VI--------YGQAAPKVSD-----LQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV 125 Y K+ D L L RF L + R + + Sbjct: 76 AFWDRETLRRYLDQNKKLDDPNGRYLLGALSERFIQKHLQAVLPLSKDDLRYITDAKGVL 135 Query: 126 KNQQL-PLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRT 184 ++ + ++++ Q+A+ AQ ++ + D + E D K + + Sbjct: 136 ESVGILGFSITFKSQSADDAQARVQMMGDYIKDTMLSEDLMDTIYTKESETKAKKQQIDN 195 Query: 185 QEVVAQEQKDLRIRQIQEALQYA----NQAQVTKPQIQQTGEDITQDTLFLLGSEAL--- 237 Q + + +++ A A +++ Q+ TG D + +L L Sbjct: 196 QIIQKRLALTQAAARLEAARSIAGKYPEASKMEARQLLSTGND-KDSSRYLSPVVQLVGT 254 Query: 238 ESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDI 275 E+ I ++ + + Q E ++ + Sbjct: 255 ETEIADLKSQLTLLERDAAQNALRNDFYERIEQRSRQV 292 >UniRef50_C5CQW3 Exopolysaccharide transport protein family n=1 Tax=Variovorax paradoxus S110 RepID=C5CQW3_VARPS Length = 764 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 82/254 (32%), Gaps = 43/254 (16%) Query: 68 GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKN 127 Q+A N + +Y + Q F L + + KL +E S + Sbjct: 268 TQLANLLNEVAQLYVRVNIDQKTAQAQRALNF----------LGTELPKLKLQLEQSEEI 317 Query: 128 QQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEV 187 + + A+ L+Q N EL+ L D R L + +++ Sbjct: 318 YNQYRNQNGTISLDDEARNALSQ---------NLELQTKLFDA-TQKRIELSERFTSRDP 367 Query: 188 VAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATR 247 D +I +++A+ Q P +QQ L + Sbjct: 368 SVMT-VDAQIASLKKAMGTVEQRIRRMPMLQQNS---------------LRMQRDIKVNT 411 Query: 248 PLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGG 307 L S + L + I R + + +LP + PK +I + +A++ G Sbjct: 412 DLYVSLLNSSLQMRL-------AKEGRIGNVRVLDQALLPEKPIRPKPSIVMGIALIAGL 464 Query: 308 MVGAGIVLGRNALR 321 GAG R + R Sbjct: 465 SFGAGSAFLRRSWR 478 >UniRef50_Q15NN8 Protein-tyrosine kinase n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15NN8_PSEA6 Length = 708 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 37/278 (13%), Positives = 85/278 (30%), Gaps = 33/278 (11%) Query: 18 IDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII----------TQPDV 67 +D+ D+L LWR K III+ + +L Y+ + + +++I+ + Sbjct: 15 LDIFDILTFLWRKKFRIIITAGLLASLGAYYVIHLPKIYVASSILLLSAKDSGLTLPSSL 74 Query: 68 GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREK--------L 119 I + Y + +Q + ++ D EK Sbjct: 75 SAITSGEDTRQDTYIEFMRSRQFVQTVVDDLALYNLHEYQQSTDGGYVSEKDYATTKLLK 134 Query: 120 TIEPSVKNQQLPLTVSYVGQTAEGAQMKLA-------QYIQQVDDKVNQELEKDLKDNIA 172 S + L ++ T A Y ++ + + L D + Sbjct: 135 QFSVSKLSNTDMLKITVESLTPSSAAEIANHIGPAFFAYYALINRQKADSKSQWLNDQLN 194 Query: 173 LGRKNLQDSLRTQEVVAQEQK------DLRIRQIQEALQYANQAQVTKPQIQQTGEDITQ 226 + +L S ++ + + + + + A + + + + + G + Sbjct: 195 ELKTSLSQSEERLLTFLRDNELVDVESQVDLAKSEIAGLISQKIHIDRAVAESQGSMVQL 254 Query: 227 DTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLD 264 T+ + L I L+ + +Q LL Sbjct: 255 ATISGGQQDYL--QIPAIQNNALIRDLRIRRGQQQLLM 290 >UniRef50_Q08U06 Chain length determinant protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08U06_STIAU Length = 498 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 102/287 (35%), Gaps = 39/287 (13%) Query: 59 TAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREK 118 + + + +++ ++A+ ++ ++E+ F FSA+ ER + Sbjct: 203 QSFLHAREREEVSSIDDAITILEEHERQAADAVKESY-DEFEKTFSAI------MLERRR 255 Query: 119 LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKV-------NQELEKDLKDNI 171 + +P + + + E AQ++ ++ + + + + +++D++ Sbjct: 256 VVGDPRLIPR-------FSSTDQELAQLR---FLIRAKRRAIADAQVQHNQRLTEMQDDL 305 Query: 172 ALGRK-------NLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDI 224 A R+ ++ + + Q ++ +E A A + + E + Sbjct: 306 AQKREMYAPDHPSVVEMENRVASLRQGSPQVKALVNEEKDMLAEYADLGGKSLPFPDEPV 365 Query: 225 TQDTLFLLGSEALESMIKHEATRPLVFS---PNYYQTRQNLLDIESLKVD-DLDIHAYRY 280 L I + + +Q L I+S K++ ++ + +++Y Sbjct: 366 PDPYGLERVLMGLLPAISENPSAAVSLEQLRSRLSAQQQILKRIDSAKLERNIAMRSFKY 425 Query: 281 ----VMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 + P + P I + AV+ G ++G L R+ L Sbjct: 426 RFTLLTPAEFPRKPIKPNAIIISLGAVVAGLVLGVFAALARDVLSGR 472 >UniRef50_C7LVW8 Capsular exopolysaccharide family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVW8_DESBD Length = 779 Score = 48.2 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 57/338 (16%), Positives = 101/338 (29%), Gaps = 75/338 (22%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA----IITQPDV 67 ++IDL D L L R K I + + +T + P V Sbjct: 38 PQAEDEIDLRDCLEVLVRRKWLIGGVLFAVFVTTFIVTLAMTPIYKATGKLEFNLQPPKV 97 Query: 68 -------------GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDN-- 112 + + A + L RF++ AE D+ Sbjct: 98 TTFEDMLVPQTQTREFMNTQTKLLTSDSLAWRVIETLDLVHNPRFNTEI--TAEGEDSGG 155 Query: 113 --QEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQE-------- 162 + R LT P + + AE Q L ++ ++ K ++ Sbjct: 156 ILSDLRRMLTTMPGQGED-----LDAQVREAEVQQRLLKVFLDNLEIKAERDTTILNLAF 210 Query: 163 -----------LEKDLKDNIALGRKN-------LQDSLRTQEVVAQEQKDLRIRQIQEAL 204 + + IA + LR Q VA+ + + ++ Sbjct: 211 SSPDPALARDVVNTFIGSFIAWQLDKKIGAAGVANEQLRKQVEVARIRLEKSEAEMN--- 267 Query: 205 QYANQAQVTK-----PQIQQTGEDITQDTLFL----LGSEALESM---IKHEATRPLVFS 252 +A +A + + + E+I LG EAL++ + A ++ + Sbjct: 268 AFAQKAGIVSLDSRMNLVYKQLEEINSALALAHAQRLGREALDAQAREVGVSALPMVIDN 327 Query: 253 PNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRR 290 P + RQ + +ES D L V KP P R Sbjct: 328 PLIQELRQQYVQLESQYEDKL------VVFKPDYPEAR 359 >UniRef50_B6BQX7 Chain length determinant protein n=1 Tax=Candidatus Pelagibacter sp. HTCC7211 RepID=B6BQX7_9RICK Length = 352 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 47/298 (15%), Positives = 103/298 (34%), Gaps = 35/298 (11%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN 74 I+ I++L +W GK+ I + I+ + +GY + + + I + Sbjct: 11 NNDIEFIEILQIIWNGKVKIFLITIIFTLIGVGYTSKIPNSFKLSITIQPSKNSNFVKFI 70 Query: 75 NAMNVIYGQAAPKVSD----------------LQETLIGRFSSAFSALAETL-----DNQ 113 ++ + + T+I RF F E + ++ Sbjct: 71 PINQMLISSLLNNSTQKHFTNQQLEINQELQVNEITMIDRFVKEFLDFEEFINVLESNSY 130 Query: 114 EEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIAL 173 + L E + Q L + Q + L Y+ ++ ++E K L + + L Sbjct: 131 IDENTLQTEIERQRQMLKYSKLLSLQRLDETNKDL-GYVIKLIWGDSEEGLKILSETLNL 189 Query: 174 GRKNLQDS--------LRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQ----QTG 221 + NL S L+ ++ + + + RI + E A + + + Q+ Sbjct: 190 TKINLHKSVFKDLDYFLKIKKEIKISENESRILFLTEQSAIAKELNIAENQVDTVNLPQD 249 Query: 222 EDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYR 279 + T +G L+ + L+ + Y ++ IE LK + +++ Y Sbjct: 250 KIAVNVTTNNIGY-YLQGYKAIDKEISLIENREYKDIKKIKERIEILKTEKINLVDYN 306 >UniRef50_Q1QD59 Protein-tyrosine kinase n=3 Tax=Psychrobacter RepID=Q1QD59_PSYCK Length = 753 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 3/101 (2%) Query: 1 MRVENNNVSGQNH--DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTS 58 M ++ NVS D ++IDL+ LL + RG TI+ ++ + + I Y + S Sbjct: 1 MNTDSKNVSNSASKEDNDEIDLMALLFAILRGWKTIVFFAVLGLIVGILYSRYVNPTFQS 60 Query: 59 TAII-TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGR 98 A+I I+ + ++ + G A K E + R Sbjct: 61 DALIQIDEQSKGISALGSDISELIGSEASKAQTEAELIRSR 101 >UniRef50_A3DF66 Lipopolysaccharide biosynthesis n=4 Tax=Firmicutes RepID=A3DF66_CLOTH Length = 464 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 68/191 (35%), Gaps = 20/191 (10%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYL-AVAKEKWTSTAIITQPDVGQ 69 + D +IDL +++ L + I++ +++ A K + + + Sbjct: 2 EKDDILEIDLREIVYILLKKWYLIVLCFVLSAGTAFVVTQFYIKPVYKAETTLF------ 55 Query: 70 IAGYNNAMNVIYGQAAPK---VSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVK 126 + + +++ + V D +E L R + + QE ++ + ++ Sbjct: 56 LGKEKDQVSLSFSDIQVNNQLVVDYREILQSRRVAEIINQKFGVGIQEFQKNVNVKT--V 113 Query: 127 NQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQE 186 ++SY + A + + V Q++ ++ I + + D+ + E Sbjct: 114 KDSRLFSISYEDTDPKRAADIVNEL-----ATVIQKMADEI---IQVKNIKVIDTAKIPE 165 Query: 187 VVAQEQKDLRI 197 + K + I Sbjct: 166 NPIKPNKKMNI 176 >UniRef50_B0VJW4 Putative Non-specific protein-tyrosine kinase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJW4_9BACT Length = 762 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 76/203 (37%), Gaps = 14/203 (6%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD 66 N + Q E+I L D + + + +I+ +VA+ + Y A + ++++ I D Sbjct: 4 NENNQLPVQEEIKLSDYFRIILQYRYLVILVFLVALVATVYYTARLPKIYSASTRILLED 63 Query: 67 VGQIAGY----------NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER 116 + + N N I + + +L ++ ++ + + Sbjct: 64 ANKQSDLMFLSTGGLGKNTLNNQIELIHSKPIMNLAWEIMKKYPD-WDTFPASQAADPAS 122 Query: 117 EKLTIEPSVKNQQLPLTVSYVGQTAEG---AQMKLAQYIQQVDDKVNQELEKDLKDNIAL 173 ++ K + LT+S+ A +A+ IQQ + + + +++ + Sbjct: 123 TLGRMKVESKRETDVLTISFESTNPTEAMAAVNSIAEAIQQQNTQYARLEFTTIREFLET 182 Query: 174 GRKNLQDSLRTQEVVAQEQKDLR 196 + L++ E +E K+L Sbjct: 183 QLDAISRRLQSSENDLREFKNLN 205 >UniRef50_Q13QA8 Protein-tyrosine kinase n=3 Tax=Burkholderia RepID=Q13QA8_BURXL Length = 736 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 53/141 (37%), Gaps = 7/141 (4%) Query: 180 DSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALES 239 R E+ Q + Q A AQ+ + +Q + L + +AL Sbjct: 339 SQTRLVELQQQRSALAQRYTTQHPSVQAIDAQIADLKKRQGAFNEKVAALPNVQQQALRL 398 Query: 240 MIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITL 299 M L + Q L +++ ++ ++ R V + R PKK + + Sbjct: 399 MRDVRVNTDLYT--KLLDSTQQLHVLKAGQLGNV-----RTVDYAEVAERSVKPKKTLVI 451 Query: 300 ILAVLLGGMVGAGIVLGRNAL 320 +L+ ++G ++G I R+ L Sbjct: 452 VLSGVIGLLLGCSIAFVRSTL 472 >UniRef50_Q0YTR7 Lipopolysaccharide biosynthesis n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YTR7_9CHLB Length = 394 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 49/358 (13%), Positives = 108/358 (30%), Gaps = 52/358 (14%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG-------- 68 +I+L+D+ + L + I+ +V +A + +T+ P Sbjct: 18 EINLLDVAIVLAKYIKLIVALPLVCAIIASVVTIQSPNIYTADTTFMPPKQESSVSSMVS 77 Query: 69 ------------QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER 116 G A A K +Q+ +I RF + +T + R Sbjct: 78 SLSSLGSLSGMLGSGGGALAGTNDIYVAVLKSRKMQDDMIRRFR--LFDIYKTNSAENAR 135 Query: 117 EKLTIEPSVKNQQLPLTVSYVGQT-AEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGR 175 L + SV + L YV T + A + Y+ + + N+ + Sbjct: 136 RALAAQTSVMAGKDGLIHLYVTDTNPKRAALLANGYVDVMLQQNNEFALTEAARRRQDAE 195 Query: 176 KNLQDSLRTQ--EVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQ----DTL 229 K D+ + ++ + I Q A + K +Q E + Sbjct: 196 KEFLDAKNRLSDAESSVKELQEKTGLITVGPQIAALQTMIKSTERQLAEMSVYSTPNNPD 255 Query: 230 FLLGSEALESMIKH----------------------EATRPLVFSPNYYQTRQNLLDIES 267 ++ + L + TR L ++ YQ L + Sbjct: 256 YIKTRQKLNDLQNEIGKAQTGSGYISKAPEKILEFTRKTRDLKYAEALYQLALQQLTLAR 315 Query: 268 LKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 + + + + V + ++P + P ++ ++++ + V + A + Sbjct: 316 ID-ESKSASSIKIVDRAVVPEEKSGPFRSRSVMIVAIAALFVAVIVAFVLEAYQRAKG 372 >UniRef50_A8UTW4 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UTW4_9AQUI Length = 275 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 73/182 (40%), Gaps = 19/182 (10%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 ++IDL +L ++L + I+++V+V IA ++ YL + K + ++ +I P + Sbjct: 13 DEIDLYELWLKLKKRWRVILVTVVVFIAASVTYLFITKPVYRTSFLIKVPGI-------- 64 Query: 76 AMNVIYGQAAPKVSDLQETLI-GRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTV 134 + +A+ V ++ L R+ L+ D L ++ + + V Sbjct: 65 ---ITPVEASEYVKSVKRLLKEKRYEEVAKLLSVDKDTVLSIHNLEAR-ELRKSKDVIGV 120 Query: 135 SYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKD 194 + + ++ + EL + + I L ++ L + + E + K+ Sbjct: 121 TLEVYDPSVINGLSKAIVNYLN---HNEL---IAEKIELRKRELSEKIAIIENRVKALKE 174 Query: 195 LR 196 + Sbjct: 175 TK 176 >UniRef50_Q7UF18 Similar to type 8 capsule gene Cap8B n=1 Tax=Rhodopirellula baltica RepID=Q7UF18_RHOBA Length = 785 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 69/192 (35%), Gaps = 21/192 (10%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA-IITQPDVGQIAGYN 74 + + +D+L L R + I I +A + Y A+ + S A ++ + G + Sbjct: 22 DGEETLDVLQILSRQRWLIAFLSIAGLAAGVAYALNAQVWYESNAKVLINQKSAGLGGNS 81 Query: 75 NAMNVIYGQAAPKVSD-----------LQETLIGRFSSAFSALAETLDNQEER-EKLTIE 122 +++ + L++T + S S L E D + ++L+I Sbjct: 82 TGTDMVDEDILANHMELIQSRMIVGEALEQTELVNLPSIESHLDEKTDAIDYVIDQLSIV 141 Query: 123 PSVKNQ---QLPLTVSYVGQTAEGAQMKLAQ----YIQQVDDKVNQELEKDLKDNIALGR 175 L +++ + A+ L Y Q + D+V +++ + + + Sbjct: 142 KGGDGSAKTARSLNITFTHTEPDDAKRILTAVMKRYEQFIIDQV-EQVMGRANEMVNKAK 200 Query: 176 KNLQDSLRTQEV 187 ++ L E Sbjct: 201 TEVEAELVAAEQ 212 >UniRef50_B3EME9 Capsular exopolysaccharide family n=3 Tax=Chlorobiaceae RepID=B3EME9_CHLPB Length = 803 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 43/314 (13%), Positives = 95/314 (30%), Gaps = 66/314 (21%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 + N ++I++ +LL LW+ ++ I V + L + Y A ++ ST+++ Sbjct: 4 NDPNQFEQEINIQELLQVLWQNRLIIGAVTGVVLVLVMLYHFSATPEYRSTSVVLI--KS 61 Query: 69 QIAGYNNAMNVIYGQAAPKVSD--------------LQETLIGRFSSAFSALAET----- 109 G + +N ++ + ++E + + E Sbjct: 62 DKGGMSEMINPFESMTGFELQNDIELVKSFPLAEEVVRELYARKDRDSLQLFGERRYISP 121 Query: 110 -----------LDNQEERE------------KLTIEPSVKNQQLPLTVSYVGQTAEGAQM 146 +EE+E + I S L VS + A + Sbjct: 122 IGHLFSWMRFGTREKEEKEYDIRMREYATALQKRISVSNSRDTDILQVSVSSPFPDEAAL 181 Query: 147 KLAQ----Y----IQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRI- 197 Y I+ D+ +++ + D +A +K + + ++Q + Sbjct: 182 LTNAICRSYMRKDIEWNADQAMS-VKEFVSDQLASQQKEIGEVENQLSSYMKKQNIYELT 240 Query: 198 ---RQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLL-----GSEALESMIKHEAT-RP 248 ++ E L A Q + +L+ +AL + I + Sbjct: 241 GNAEKLLEKLVEAES---RYNDAQAECNILKNRQDYLINKLSAEEKALSAKIAKNVDQQS 297 Query: 249 LVFSPNYYQTRQNL 262 Q + L Sbjct: 298 RELKERIKQEEKQL 311 >UniRef50_Q7U940 Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 8102 RepID=Q7U940_SYNPX Length = 561 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 33/225 (14%), Positives = 74/225 (32%), Gaps = 20/225 (8%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 + + Q D ++IDL + L R + I + L+ Y K W + I Sbjct: 6 SQTLQPQQLDNDEIDLRQVAAALKRQWLLIGGITAATVLLSGIYAFTRKPVWEGSFQIVL 65 Query: 65 -------PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQE--- 114 + ++A N + + G +A + S + E I S + + + Sbjct: 66 ENQDVGGGRLAKLAAANPMLAGLAGVSAGESSLVTEVKILESPSVLRPTYDFVKASKAAA 125 Query: 115 --EREKLTIEP---SVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKD 169 + K I S++ + + T + + + ++++ + KD + Sbjct: 126 GADVSKWVITDWTRSLEIELVKGTSVLSLTYRDTDEDLILPVLERITRTYQEYSGKDRRR 185 Query: 170 NIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTK 214 + G L+ + Q+ + +A AN + Sbjct: 186 GLTQGVAYLEQEIDKLR-----QQSATSMRTAQAYALANGLGIQD 225 >UniRef50_B1XZS2 Lipopolysaccharide biosynthesis protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XZS2_LEPCP Length = 398 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 52/372 (13%), Positives = 123/372 (33%), Gaps = 56/372 (15%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT-- 63 N +S N E++ LID+L+ L R K+ ++++ ++ A+G + + +T++ + Sbjct: 16 NVISDMNAS-EELSLIDVLLILSRRKLLLVVAPLLVGCAALGMSYLVRPTYTASVQLLPP 74 Query: 64 ------------------QPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSA 105 +G I+G N + G + + + ++ FS Sbjct: 75 QQQQSGALTALLGAAGGMASALGGISGLKNPSDQWIGMLKSRA--IVDAIVNEFS--LRE 130 Query: 106 LAETLDNQEEREKLTIEPSVKNQQLPLT-VSYVGQTAEGAQMKLAQYIQQVDDKVNQELE 164 + E + RE+L + + L + E A Y+ ++ + + Sbjct: 131 IYEVEYQFKARERLEKNSRIVAGKDGLIDIEVDDHDPERAAKIATAYVDELQNLMRTLAV 190 Query: 165 KDLKDNIALGRKNLQDSLRTQ-------------EVVAQEQKDLRIRQIQEALQYANQAQ 211 + K L D+ V + + + Q+ +A + Sbjct: 191 TEAAQRRLFFEKQLSDTKTKLIKAEILLTEGGINTGVLKTNPEAAVSQLAQAQAAVTAQE 250 Query: 212 VTKPQIQQT-GEDITQDTLFLLGSEALESMI--------KHEATRPLVFSPNYYQTRQNL 262 V ++++ Q +L +L + + + + + Sbjct: 251 VKVSVMRESMTNSNPQLRNAILELASLREQLHRSNRDEPERAKGSGAEYVTRFRDFKYYE 310 Query: 263 LDIESLKV--------DDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIV 314 + + D + + +P + PK+ + +LA +L ++ V Sbjct: 311 TLFDLFARQYEMARADEARDGSVIQVIDPAQVPEYKSGPKRGMIAVLATILTFILSVLYV 370 Query: 315 LGRNALRNYNAK 326 L +ALR Y + Sbjct: 371 LASHALRGYTTR 382 >UniRef50_A4C494 Exopolysaccharide biosynthesis protein, putative n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C494_9GAMM Length = 686 Score = 46.3 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 35/258 (13%), Positives = 87/258 (33%), Gaps = 45/258 (17%) Query: 67 VGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVK 126 ++ N +++ K + +L +A + E + RE + + S + Sbjct: 223 YRELRELNLQFDLL------KRFSQKVSLANNDLNALLVINEITNAPIIRELVQQKASQQ 276 Query: 127 NQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQE 186 Q + + Y+ + M L I + ++ +E+E + + ++ ++ + E Sbjct: 277 AQLSQIKLRYLDKHPTFKSMALK--IADTEQQLEKEVEAFIV-AMTKNKQEVELQISELE 333 Query: 187 VVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEAT 246 + Q DL I Q+ F I+ Sbjct: 334 LKQQNANDL------------------------LESAIIQEQEF--------KKIQRSVD 361 Query: 247 RPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLG 306 + + ++ ++ + D DI V + PI PKKA+ ++ ++G Sbjct: 362 ANIKLLESLSAKQKETELLKDI-TDSSDIIV---VDPAITPISPIRPKKALIAAVSCVMG 417 Query: 307 GMVGAGIVLGRNALRNYN 324 ++ +V+ + + + Sbjct: 418 FILSIVLVILLHFFADAH 435 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 70/200 (35%), Gaps = 17/200 (8%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT-------QPDVG 68 ++IDL DLL W K I++ + A+ + + + +T + P Sbjct: 10 DEIDLADLLSLFWIKKWFILVVTGIVFAIGLSIVDRMPNIYKATTTVMVKGSKANNPLQS 69 Query: 69 QIAGYNNAMNVIYGQA-APKVSDLQETLIGRFS--SAFSALAETLDNQEEREKLTIEPSV 125 + G +A + + K S +T++ S + + A + + ++ Sbjct: 70 LVPGMGSANDDLDTTIKLLKSSQFAQTIVDSLSIPATLNQYASDFTWSGDDLLTHLSINI 129 Query: 126 KNQQLPLTVSYVGQTAEGAQMKLA-------QYIQQVDDKVNQELEKDLKDNIALGRKNL 178 ++ L +S+ Q A+ + + QY + + + + + I + +L Sbjct: 130 VSKTNLLEISFESQDAKFSAVVANQIAQAFMQYQTDLMQPHSNKSDDWINSKIQGVKDSL 189 Query: 179 QDSLRTQEVVAQEQKDLRIR 198 + Q Q + I Sbjct: 190 EVEEAKLMAFRQSQNVVDIA 209 >UniRef50_Q0AAI3 Putative uncharacterized protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AAI3_ALHEH Length = 721 Score = 46.3 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 8/83 (9%) Query: 3 VENNNVSGQNHDPE-QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAI 61 + + D + +I++ L+ L GK I + +AL Y + ++ + Sbjct: 1 MSQYEHRPTSSDRDDEIEIGRLVEILLNGKWIIAGLSALGLALGGFYAYTSTPVYSGDML 60 Query: 62 I-------TQPDVGQIAGYNNAM 77 + T P + ++ G + Sbjct: 61 LQVESKQATLPGLSEMLGGEQQV 83 >UniRef50_A9W3V2 Lipopolysaccharide biosynthesis protein n=6 Tax=Alphaproteobacteria RepID=A9W3V2_METEP Length = 804 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/149 (16%), Positives = 55/149 (36%), Gaps = 10/149 (6%) Query: 174 GRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGED--ITQDTLFL 231 K L ++ E + + +R ++ + A A+V + G+ + + Sbjct: 334 RIKELTAQVQDLENQIKAAAERVVRTLENDAKIA-GARVESLRAAVEGQQDVVAKGNTSE 392 Query: 232 LGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRD 291 + ALE K + + + Y + ++ R V + ++P Sbjct: 393 VELRALEREAKSQREQLESYLARYREAAAR-------DAENASPANARVVSRAIVPDLPS 445 Query: 292 SPKKAITLILAVLLGGMVGAGIVLGRNAL 320 PKK + A +L ++ + V+GR+ L Sbjct: 446 FPKKLPIVAFATMLAFLLASAGVIGRHLL 474 >UniRef50_A4JQJ9 Lipopolysaccharide biosynthesis n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JQJ9_BURVG Length = 743 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 89/237 (37%), Gaps = 34/237 (14%) Query: 116 REKLTIEPSVKNQQLPLTVSYVGQTA----EGAQMKLAQYIQQVDDKVNQELEKDLKDNI 171 ++ L++E K + L+V+ G E + + Y+ Q D ++E L +++ Sbjct: 244 QDDLSVEEKAKQSGI-LSVTLEGDDKVRIREILKAVVDGYVAQNRDYRSKEAAATL-ESL 301 Query: 172 ALGRKNLQDSLR-TQEVVAQEQKDLRIRQIQE--ALQYANQAQVTKPQIQQTGEDITQDT 228 + ++ +L+ +E A+ + R + E L + + ++ + Sbjct: 302 KISMPAVEQTLKDAEERYAKFRARTRTVDLDEQGKLLLGQEVDIDTRMLELKQRRVDLIA 361 Query: 229 LFLLGSEALES------MIKHEATRPLVFSPNYYQTRQN-LLDIESLKV----------- 270 F G A+++ + +A T + L + ++V Sbjct: 362 RFADGHPAVQALDANLAELAGKAAELRTREARLPDTEREGLAVLRDVRVNTELYTNLLNT 421 Query: 271 -------DDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 +I R V +P+LP++ PK+ + + L++ +G +G + A+ Sbjct: 422 AQQLNIAKQSEIGNVRAVDQPVLPVKPVKPKRLLVIALSLCVGIALGVAAPFAQRAV 478 >UniRef50_C5C9H1 Capsular exopolysaccharide biosynthesis protein n=2 Tax=Micrococcus luteus NCTC 2665 RepID=C5C9H1_MICLC Length = 524 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 56/162 (34%), Gaps = 6/162 (3%) Query: 3 VENNNVSGQNHDPEQIDL--IDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 ++ + Q E D+L + + + +V I LA + + + S A Sbjct: 1 MDQPSTKDQPSANEHSRFTPRDVLRAVRDHWVLLASCTLVGILLAALWTLTQPQTYQSQA 60 Query: 61 -IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKL 119 + V + G A+ A K + QE R + + LD + Sbjct: 61 SAVVTAGVNENLGI--ALTA-DNLAKSKATQYQELAKSRSVAEGAVERAGLDISPDAALG 117 Query: 120 TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ 161 ++ +V + +S V + E AQ ++ + +V+ Sbjct: 118 SLTVAVPPDTAEVRLSVVQDSPETAQALADAWVASLAQEVSN 159 >UniRef50_B8D182 Lipopolysaccharide biosynthesis protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D182_HALOH Length = 380 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 32/217 (14%), Positives = 81/217 (37%), Gaps = 24/217 (11%) Query: 10 GQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYL-AVAKEKWTSTAI--ITQPD 66 +N+D +IDL + + LW+G+ I+ +++A+ + Y + + A I P Sbjct: 4 KRNYDEYEIDLREYIRVLWKGRYLILGLMVIALLITGVYFKLFTSPVYEARATLLIIPPT 63 Query: 67 VG---QIAGYN----NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETL-------DN 112 ++A + + A + L+ I S S L + + N Sbjct: 64 YKTSLEVATLPLDTYKNLAMTDTMKADIIEKLKLNNIDGESYTTSDLGDKMSIEILTGSN 123 Query: 113 QEEREKLT--IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDN 170 R+ L + + P S + T M+ + I++ + + + ++ ++ Sbjct: 124 PNRRDSLEAPLIVLKVKSKKPELASKIANTWAELFMEATRKIRKGEVREISLVIEEQFND 183 Query: 171 IALGRKNLQDSLRTQEVVAQ-----EQKDLRIRQIQE 202 +Q+ L + + +++ ++++E Sbjct: 184 TREKLNEVQNKLEEFREQTRPGLVEIELEVKEKRLRE 220 >UniRef50_B5WI70 Capsular exopolysaccharide family n=1 Tax=Burkholderia sp. H160 RepID=B5WI70_9BURK Length = 730 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 35/219 (15%), Positives = 73/219 (33%), Gaps = 18/219 (8%) Query: 114 EEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIAL 173 ER+K+T +V + A+ LA + +Q+ ++ E++ + A Sbjct: 258 SERQKVT--DTVNTIAREYVNQNNARKESDAERSLALFDKQLP-RLRAEVDDAEQRYNAF 314 Query: 174 GRKNLQDSL---RTQEVVAQEQKDLRIRQIQE-ALQYANQAQVTKPQIQQTGEDITQDTL 229 + L + + +I +++ + A + P + I Sbjct: 315 REAHGAVDLGEESRLLLQQMVDLETKITDLKQQSSDLAQRFAPGHPAVASVDAQIADLQH 374 Query: 230 FLL-------GSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDL-DIHAYRYV 281 G ALE + V + Y ++ K + ++ Y Sbjct: 375 RRDALSRQVAGLPALEQTVLRLQREVRVNTGLYTNLLNRAQELRVAKAAEAGNVRVVDYA 434 Query: 282 MKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 + P P PK + L L+ +LG ++G R+A+ Sbjct: 435 LPPDRP---AKPKVPLVLALSSVLGLLIGTTWAFARHAV 470 >UniRef50_B8IGI5 Lipopolysaccharide biosynthesis protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IGI5_METNO Length = 536 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 43/279 (15%), Positives = 89/279 (31%), Gaps = 35/279 (12%) Query: 32 MTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDL 91 + II + +AL Y+ V + + + I + + +G+ +V Y Q + S + Sbjct: 38 LLIISCMACCVALGEAYVLVTPSTYAAASQILI-ESRRASGFAATSDVSYAQYSLDSSQI 96 Query: 92 QETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQY 151 + + + + +++ ++ + Q + ++ + Sbjct: 97 ENQI------------QIIKSEQTSRRVVRAMQLDENQNQEKLKASVLSSLRGYILGNGD 144 Query: 152 IQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQ 211 + D+ + DL D + + R E+ + + +I A+ A Sbjct: 145 VATPPDRTTMAMR-DLLDRLQVRR---IGQSYVLEISYWSEDPVAAARICNAITAA---- 196 Query: 212 VTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVD 271 G I GSE LE I + +L V Sbjct: 197 ---YFQDLLGSKIDAAKN---GSELLEQRISLLRDQWATADEAVRT--------GTLDVT 242 Query: 272 DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVG 310 L R + LP +R P +++ L + LLG V Sbjct: 243 KLATPEARVITMAALPSKRSWPHQSLILAFSALLGLFVA 281 >UniRef50_B9JKJ4 Exopolysaccharide polymerization protein n=3 Tax=Rhizobium/Agrobacterium group RepID=B9JKJ4_AGRRK Length = 578 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 42/282 (14%), Positives = 88/282 (31%), Gaps = 33/282 (11%) Query: 29 RGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT----QPDV--GQIAGYNNAMNVIYG 82 + K +I+ V I LA + +T+TA + +P + GQ +++ Sbjct: 43 QHKTKLILCTAVGIGLAAFHAHSLPRIYTATATLLLEPRRPTLASGQDGSGAQNLDLNRA 102 Query: 83 QAAPKVSDLQETLIGRFSSAFSALAETLDNQEER------EKLTIEPSVKNQQLPLTVSY 136 + ++ + L F S + L Q R + S S Sbjct: 103 DSELQIIRSERLLSAVFDSLNLEASAELGPQPPRMLDLVVSNVRRIFSEPGTGTGAATSE 162 Query: 137 VGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLR 196 G+TA I+ Q + + + R E+ + Sbjct: 163 TGKTARSDGAVATNNIEPPATNARQAAFQSFARRLDVRRV---GQSYVMEISYSSSDPVL 219 Query: 197 IRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYY 256 + AN A V+ +Q + G+E L+ + A++ + Sbjct: 220 AAR------VANAA-VSGYILQAVSFK---AEMAQAGTEVLQWRLDALASQVDAATDAMK 269 Query: 257 QTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAIT 298 Q + + ++ D D R + + P+ +P+ ++ Sbjct: 270 QGK-----LPAIPTPDGDA---RIIGAALPPLSPSAPRPSLI 303 >UniRef50_Q2S4Z4 Chain length determinant protein n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S4Z4_SALRD Length = 435 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 29/55 (52%) Query: 10 GQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 ++I L++L+V L RG+ I++SV+ L + Y ++T+ + + + Sbjct: 22 RMPPPEDEITLMELIVTLSRGRGLIVLSVVGIGLLGVLYSVATPSRYTAESKVIR 76 >UniRef50_B3CC43 Putative uncharacterized protein n=3 Tax=Bacteroides RepID=B3CC43_9BACE Length = 778 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 4/94 (4%) Query: 5 NNNVSGQNHDPE-QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT 63 N N N E +IDLI+L +L +++ +VA+ A Y+ V + +TA + Sbjct: 2 NTNHMDSNQMQEQEIDLIELFYKLLAHWRWFLLAAVVALTGAYIYVHVTTPVYQATASVV 61 Query: 64 QPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIG 97 + G N A++ ++ + AP T I Sbjct: 62 ---IKDSEGSNKAIDELFQKVAPSSLTSANTQIE 92 >UniRef50_Q0FSG4 Exopolysaccharide polymerization/transport protein n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FSG4_9RHOB Length = 763 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 94/282 (33%), Gaps = 34/282 (12%) Query: 53 KEKWTST-----AIITQPDVGQIAGYNNAMNVIYGQ-----AAPKVSDLQETLIGRFSSA 102 + W S+ A Q +A Y ++ + ++ E L+ A Sbjct: 223 TQVWLSSRIEELAAGVQASERAVASYRRENQLMVPEGEFLPIEIALNAANEQLVELQGQA 282 Query: 103 FSA--LAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVN 160 +A A+ L++Q E ++ ++ + + AE Q + + Sbjct: 283 VTAKVQADQLEDQIESGEIEAIQLAPEERTEAVTEFEARYAELLQAEQEALLTY------ 336 Query: 161 QELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQT 220 D + + + + RT V ++R + AL A Q T+ I Sbjct: 337 -----DESAPVVVNTRRAMEQTRTLIVQEYRSILEQLRARERAL--AGQLSATREMI--- 386 Query: 221 GEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRY 280 GE + + + AL S+ + + ++ Q + D R Sbjct: 387 GEMNADYSSVMEKTVALRSLEREAEAKRELYERMLEQYNSTSQLL------TFDATPARV 440 Query: 281 VMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 + + P + P+ ++LA G ++ G+VL AL N Sbjct: 441 IAWAVPPDTKSGPRSKRIVVLAAFAGLLLSIGVVLAIEALDN 482 >UniRef50_B2J3C6 Lipopolysaccharide biosynthesis protein n=5 Tax=Nostocaceae RepID=B2J3C6_NOSP7 Length = 738 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 47/317 (14%), Positives = 107/317 (33%), Gaps = 49/317 (15%) Query: 18 IDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT-------------Q 64 +D+ L L R + I+ V ++ A +AK + S+ I Sbjct: 21 VDIRQLSTILLRRRFLILGVSCVVMSSASLLAVLAKPTYQSSMQILVNSNLSQGTQSNNI 80 Query: 65 PDVGQIAGYNNAMNVIYGQAAPKV---SDLQETLIGRFSSAFS--ALAETLDNQEEREKL 119 P N+ V+ K+ S L + + S + LA+ ++ +K Sbjct: 81 PVEADTQVTNSNYQVVDSTTQMKLMLSSKLLQKAVDLVHSDYPDITLADINGQTKQNKKA 140 Query: 120 TIEPSVKNQQLP--------LTVSYVGQTAEGAQMKLAQ----YIQQVDDKVNQEL---E 164 +E + + + VS+ + AQ L Y ++ + L Sbjct: 141 PLEVTPEEGGIGANKVFSQVFKVSFNDEDPVKAQKLLQALQKVYQNYNKEQQKERLNHGL 200 Query: 165 KDLKDNIALGRKNLQDSLRTQEVVAQEQK----DLRIRQIQEAL-QYANQAQVTKPQIQQ 219 + + +K + + + E ++ K +++ + + E+L NQ Q T+ +Q Sbjct: 201 AFVNARLPEIKKEVSKADKNLEQFRKKHKLLNPEVQSKILLESLADIQNQLQTTRANLQD 260 Query: 220 TGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYR 279 + LE I + + + S Q+ + + ++ +L + R Sbjct: 261 ANAR----------YDNLEQQIASSSQQTELISSRLNQSSRYQTLLSEIQNTELALAKER 310 Query: 280 YVMKPMLP-IRRDSPKK 295 P +++ ++ Sbjct: 311 LRYTDDYPSVQKLKQQR 327 >UniRef50_A0LGD5 Lipopolysaccharide biosynthesis n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LGD5_SYNFM Length = 408 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 59/378 (15%), Positives = 118/378 (31%), Gaps = 70/378 (18%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD-- 66 + + + I L+DLLV + K I++ A + +T TA + P Sbjct: 4 TPRQSSEKVITLLDLLVITAKRKRLILVGTFSFFAFLMALCFYMDPIFTGTAKVVVPQNT 63 Query: 67 ------VGQIAGYNNAMNVIYG--------------QAAPKVSDLQETLIGRF----SSA 102 + QIAG A +I G + V D G + Sbjct: 64 SSSTAILSQIAGSTGAAGLISGALGLGSSADMYVGLLKSRTVIDAVIQKYGIYALYKDDR 123 Query: 103 FSALAETLDNQEEREKL--TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQV----- 155 D RE ++P + + +T+ + + A+ + ++ Sbjct: 124 ILGSVRPYDMDSCRESFMGALKPELDAESAIITIGIEDKDRQRARDMANSLVDELLKISQ 183 Query: 156 ----DDKVNQELEKDLK-DNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQA 210 + L DL+ ++SL+ + + + + QA Sbjct: 184 SISAASAQQKRLYYDLQLKKAHEALVGAEESLKMFQESTGVIQIDEQARATLSGIATIQA 243 Query: 211 QVTKPQIQQT---GEDITQDTLFLLGS---EALESMIKHEATRPLV-------------- 250 Q+ +IQ + + + + E L+ +K + Sbjct: 244 QIAAKEIQLKVMRSYAASSNPDLIRATAELEGLKEQLKKLEEKESSPSGGSIIPTGSVPS 303 Query: 251 FSPNY--------YQTRQNLLDI---ESLKVDDL-DIHAYRYVMKPMLPIRRDSPKKAIT 298 +Y YQ LL + ES ++D+ D + V + +LP ++ PK I Sbjct: 304 LGADYLRKVRDFKYQETVYLLLLKMYESARLDEANDSSIVQVVDRAVLPEKKTRPKPVII 363 Query: 299 LILAVLLGGMVGAGIVLG 316 + +L+G ++ Sbjct: 364 GVAGILIGFILSVFAAFL 381 >UniRef50_C5NWJ9 Capsular polysaccharide biosynthesis protein CpsC n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NWJ9_9BACL Length = 232 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/143 (13%), Positives = 52/143 (36%), Gaps = 3/143 (2%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYL-AVAKEKWTSTAIITQPD 66 + Q D Q+D++ LL ++W K+ I++ ++ A ++ Y + +++ST + Sbjct: 1 MDNQEKDLIQLDIMLLLRRIWEKKVLIVLVTLLFTAASLAYSIFLVTPQYSSTTKVYV-- 58 Query: 67 VGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVK 126 V Q + V D +E ++ +A + + + Sbjct: 59 VNQKKDDKAITTQDVQLGSLLVKDYKEIILSNKVMEDAAEKSGTEITARQLAGKVSVDAP 118 Query: 127 NQQLPLTVSYVGQTAEGAQMKLA 149 ++++ + + A Sbjct: 119 KDTRIISITVRDKDPQVASDLAN 141 >UniRef50_Q0AW94 Capsular polysaccharide biosynthesis protein-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AW94_SYNWW Length = 435 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 27/192 (14%), Positives = 71/192 (36%), Gaps = 11/192 (5%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAV-AKEKWTSTAIIT--QPDVGQ 69 +D E+IDL D+ + + K TII ++ + L+ + + ++ +++ Q + + Sbjct: 10 NDYEEIDLRDIFKTINKWKHTIIAVTLICVLLSGIFSFFVLDPVYEASTVVSIYQAQLNR 69 Query: 70 IAGYNNAMNVIYGQAA--PKVSDLQETLIGRFSSAFSALAETLDNQEERE--KLTIEPSV 125 +N + + P +S + + + A+ + L R K +I+ Sbjct: 70 EKESSNDITDTVNELGEIPYMSAVSCEQQVKSPAIIEAVIKKLQLPYTRNGLKSSIKTQQ 129 Query: 126 KNQQLPLTVSYVGQTAEGAQ----MKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDS 181 + ++ E A ++I ++ +++ + L+ + + Sbjct: 130 VQNTNLIIITVSNNDPELAAKIANTLREEFILHINKINKRKMAQSLEIMEKEWLQKEEVE 189 Query: 182 LRTQEVVAQEQK 193 L +E K Sbjct: 190 LDVVSEKLKEHK 201 >UniRef50_C7PF50 Capsular exopolysaccharide family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PF50_CHIPD Length = 784 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 56/144 (38%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 N N+ IDL DL +L +I +++A A A+ YL A+ ++ S+A + Sbjct: 2 NRNKDLNNKNALIDLGDLFKKLLFHWPLYLIVLLIATAGALTYLKYARPRYMSSAKLYLK 61 Query: 66 DVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV 125 D + ++ + + K + + ++ + E N +K Sbjct: 62 DEKKNGEESDMLKSLSIFNNGKNIENEMEVLKSPILVEKVIRENRFNVRYFQKGAFRNEE 121 Query: 126 KNQQLPLTVSYVGQTAEGAQMKLA 149 Q PL ++++ +A KL Sbjct: 122 IYDQNPLQLNFLSDSARVGNYKLD 145 >UniRef50_C8S386 Capsular exopolysaccharide family n=1 Tax=Rhodobacter sp. SW2 RepID=C8S386_9RHOB Length = 730 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 28/49 (57%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 P++IDL + + L R + I I+V+V + + YL A K+ +T +I Sbjct: 2 QPDEIDLRENIAILRRQRRLIGITVLVVVLATLAYLLTATPKYQATVLI 50 >UniRef50_C4DPG8 Chain length determinant protein n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DPG8_9ACTO Length = 561 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 65/196 (33%), Gaps = 20/196 (10%) Query: 29 RGKMTIIISVIVAIALAIGYLAVAKEKWTS-TAIITQPDVGQIAGYNNAMNVIYGQAAPK 87 R + ++ + ++ +A A Y + ++ S T+++ QP + + + Sbjct: 21 RHRWLLVGATLLGVAAAGAYALIVPREYISTTSVLVQPTGAEESAVTGQRSKSEIN---- 76 Query: 88 VSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQM- 146 D + L+ A A DN + SV L + +V A+ Sbjct: 77 -LDTEAQLVTSTDVATIAADSLNDNDPVALSEQVVASVPANTSILEIGFVADEPAAARNG 135 Query: 147 ---KLAQYIQQVDDKVNQELEKDLK------DNIALGRKNLQDSLRTQEVV----AQEQK 193 A Y+ + L + + + R+ L + L + A+ +K Sbjct: 136 ARAFAAAYLTHRAETARDRLSEQIDGAESDLSRLHAERRKLVERLDKMDSSDPDFAEAKK 195 Query: 194 DLRIRQIQEALQYANQ 209 D + + A AN Sbjct: 196 DRELVDGEIAELSANS 211 >UniRef50_C3KRX1 CPSC/CAPB subfamily ATPase n=5 Tax=Rhizobiales RepID=C3KRX1_RHISN Length = 633 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 36/231 (15%) Query: 105 ALAETLDNQEEREKL-TIEPSVKNQQLP----LTVSYVGQTAEGAQMKLAQYIQQVDDKV 159 AE L+ Q R + T + Q++ + +++ E A V Sbjct: 177 LTAELLEFQRRRRVVETFSQGLGVQRVGVSYAIDITFNSLDPELAAKVANA---TAGAFV 233 Query: 160 NQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIR---QIQEALQYANQAQ--VTK 214 ++LE A R +EV Q +I + + + Q + Sbjct: 234 REQLET---RAAAAREGVEWLEKRIEEVRVQMNLATQITQEFRAKHDYRVGRQPGAPIVD 290 Query: 215 PQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLD 274 Q+ +GE + LE R+ + + + ++ Sbjct: 291 GQVAPSGEGESTTPS----GPTLEE-----------LEVTAETYRKMYESLLAGFTNSVN 335 Query: 275 IHAY-----RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 + R + P+ P+ + L L VL G M G G+ R+ L Sbjct: 336 QQPFLIADARVITPATRPLAPSYPRTKLVLALGVLAGLMAGVGLAFARHTL 386 >UniRef50_B2JS55 Capsular exopolysaccharide family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JS55_BURP8 Length = 736 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 33/79 (41%), Gaps = 5/79 (6%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII-----TQPDVGQ 69 ++ID ++L L K I+I + L++ Y + + + A++ Sbjct: 10 DDEIDFRNILGALIDHKRLILIITGTFVTLSVLYSILTAPVYEADAMLQVEHRLPTGGTM 69 Query: 70 IAGYNNAMNVIYGQAAPKV 88 +AG + +N +A ++ Sbjct: 70 MAGMDQLLNTANAEAVTEI 88 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 31/227 (13%), Positives = 71/227 (31%), Gaps = 32/227 (14%) Query: 126 KNQQLPLTVSYVGQTAEGAQMKLAQ----YIQQVDDKVNQELEKDLK---DNIALGRKNL 178 +++SY + A L + Y++Q + ++E K L+ D + R L Sbjct: 240 GKDSGIVSISYQNEDPTLATRTLQEITQEYVRQNVARNSEEAAKSLQFVRDQLPKVRGEL 299 Query: 179 QDSLRTQEVVAQEQKDLRIRQIQEAL---QYANQAQVTKPQIQQTGED-----------I 224 + + + + I +AL + + + + ++QQ + Sbjct: 300 EKAQTALKDFELSSHSVDIGLETKALLDQVVSVETNIQQVRMQQVDAQQRFQAGQPTLRV 359 Query: 225 TQDTLFLLGSE--ALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHA----- 277 D L L S+ +L++ I + + L + Sbjct: 360 LDDQLAQLNSKKASLKAQISNLPDTQRHLLQLTRDVEVSSRTYTDLLTQAQQLDVARAGT 419 Query: 278 ---YRYVMKPMLPIR-RDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 R V P + P++++ ++ + G V V + Sbjct: 420 VGNVRVVDVPEVDTTAPVRPRRSMIILCGLFAGLAVSMLTVYIKRTF 466 >UniRef50_C4Z673 Non-specific protein-tyrosine kinase n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z673_EUBE2 Length = 283 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 58/174 (33%), Gaps = 11/174 (6%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVA-KEKWTSTAIITQPDV 67 + + +IDL ++ L I+++ +V ++A Y ++ ST + + Sbjct: 4 KSKETENIEIDLREIFGVLIHRLWIIVVAALVCGSVAFMYSFFVITPQYESTTKVYILNK 63 Query: 68 GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKN 127 +G +V K D ++ + R+ LD E + S Sbjct: 64 QNASGSVTYSDVQLSSTLSK--DYEQLVTSRYVIEGVINDLKLDETYESLVKRVSASNAT 121 Query: 128 QQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDS 181 + ++ E AQ + + V K + + + + N+ D Sbjct: 122 DTRIIAITVTDPEPEQAQK--------IANSVRDLAAKHITEVMDIEAVNVVDQ 167 >UniRef50_B2TDM9 Exopolysaccharide transport protein family n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2TDM9_BURPP Length = 747 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 255 YYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIV 314 Y R N+ + +K + + + +P R P K + L+++ +LG V G+ Sbjct: 410 YSALRSNIDTLRLVKAGQSA--SVQLLDTADVPERPVKPAKTLVLLISAVLGLFVAIGLA 467 Query: 315 LGRNAL 320 R+ L Sbjct: 468 FLRDYL 473 >UniRef50_B2T0D7 Exopolysaccharide transport protein family n=6 Tax=Burkholderia RepID=B2T0D7_BURPP Length = 744 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M + N P+++ L D L + RG TI++ ++A+AL Y +A + + Sbjct: 1 MAINFENRYTDVSGPDELHLSDYLRTIVRGWRTIVVVTLIALALGCAYAFLAPPTYRADV 60 Query: 61 II 62 + Sbjct: 61 LF 62 >UniRef50_B5S582 Putative tyrosine-protein kinase epsb , polysaccharide export protein epsb (Partial sequence) (Fragment) n=1 Tax=Ralstonia solanacearum RepID=B5S582_RALSO Length = 727 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 71/200 (35%), Gaps = 19/200 (9%) Query: 133 TVSYVGQTAEGAQMKLAQYIQQVDDKV-NQELEKDLKDNI-------ALGRKNLQDSLRT 184 + + AE + + L + Q+ ++ E++ + N+ G+ LQ+S+ Sbjct: 277 NIKRKAEEAERSLVFLDGLLPQLKLELERAEMKYNEMRNLRGTFDLSEEGKAFLQESVTV 336 Query: 185 QEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHE 244 E QE K R + A+ V I Q ++ + + L+S+ E Sbjct: 337 -ETSLQELKQKRAELLTR--FTASHPGVQ--AIDQQISVMSGKVNSM--TRRLKSLPNIE 389 Query: 245 ATRPLVFSPNYYQTRQNLLDIESLK----VDDLDIHAYRYVMKPMLPIRRDSPKKAITLI 300 + + + ++ V + R V +P PKK Sbjct: 390 QDTVRLMRDVQVDNDLYVSLLNDMQQLKLVKAGKVGNVRLVDGAAVPEEPVKPKKLTVTA 449 Query: 301 LAVLLGGMVGAGIVLGRNAL 320 LA +LG ++G RNAL Sbjct: 450 LAGVLGVVLGVMAAFVRNAL 469 >UniRef50_B1FTG2 Exopolysaccharide transport protein family n=4 Tax=Burkholderia RepID=B1FTG2_9BURK Length = 750 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 60/167 (35%), Gaps = 20/167 (11%) Query: 159 VNQELEKDLKDNIALGRKNLQDSLRTQEVVA---QEQKDLRIRQIQEALQYANQAQVTKP 215 +++E + L++++ L L + E+ A E +R Q A A +A V++ Sbjct: 323 ISEEGKTYLRESVELQASALALKQKRSELTALFTSEHPSVRAVDQQLASLSAKEAAVSQR 382 Query: 216 QIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDI 275 L E+L M L Q L + + KV + Sbjct: 383 MTSLP----------ELEQESLRLMRDVRVNNDL--YVGMLNNMQQLKLVRAGKVGTV-- 428 Query: 276 HAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 R + + ++P P K + + + +LG +G R+ LR Sbjct: 429 ---RLLDRSLVPKEPIKPNKPLLIAASAVLGLFLGIAATFMRHILRG 472 >UniRef50_UPI0001908773 hypothetical protein RetlI_29099 n=1 Tax=Rhizobium etli IE4771 RepID=UPI0001908773 Length = 300 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 31/236 (13%), Positives = 86/236 (36%), Gaps = 28/236 (11%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 + V ++ +D++D+++ L + +I ++ + + + + ++ S A++ P Sbjct: 12 DTVDSSSNPGNGVDVLDVVLILAKSIRVMIAIPLLGFFIVLAFFFLLPPRFESEALVRMP 71 Query: 66 DVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV 125 + + + L+ ++ + A E+ + ++ Sbjct: 72 -------IERTLLLQSASFLDDAVKTNQWLLAQYEKQYQA--------REKFRKSLRVVN 116 Query: 126 KNQQLPLTVSYVGQTAEGAQMKLAQYIQQV------------DDKVNQELEKDLKDNIAL 173 + + Y+ T A+ L+ ++Q+ + + + +L+ + Sbjct: 117 ISGTDIYRLQYIADTPPHAEQALSSILEQLLAASRPSPDRQEELRTRLLSQTNLQQTLQK 176 Query: 174 GRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTL 229 + L S+ QE E + I +AL+ +NQA + + G + D L Sbjct: 177 TLEQLSGSIPGQENQPIEVSGQAVVAIADALEKSNQA-ILATETSMKGSVSSSDIL 231 >UniRef50_B2SUL4 Exopolysaccharide xanthan biosynthesis chain length determinant protein GumC n=18 Tax=Xanthomonadaceae RepID=B2SUL4_XANOP Length = 472 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 19/155 (12%) Query: 167 LKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQ 226 L I R+ + + + D + QE L A + ++ G I Sbjct: 328 LNAQIEESRRQINGEVINVRQSLKATYDASVH--QEQLLNERIAGLRNNELDLQGRSIRY 385 Query: 227 DTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPML 286 + M+K + Q + + ++ +++ I V + Sbjct: 386 N------------MLKRDVDTNRQLYDALLQRYKEIGVAGNIGANNVTI-----VDTADV 428 Query: 287 PIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 P + SPK + L L ++ G +G + L R LR Sbjct: 429 PTSKTSPKLKLNLALGLIFGVFLGLAVALVRYFLR 463 >UniRef50_Q3KCE9 Putative exopolysaccharide biosynthesis protein n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3KCE9_PSEPF Length = 770 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 38/257 (14%), Positives = 81/257 (31%), Gaps = 23/257 (8%) Query: 70 IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQ 129 + GY ++ +S + + G + + + N+ E E + Sbjct: 253 LQGYREEQGLVDVGGVATISANELEMTG------NRMVDARRNRAEAESEYRQAKALGNG 306 Query: 130 LPLTVSYVGQTAEGAQMKLAQY-IQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVV 188 +S A + + ++ + + + + Q LRT Sbjct: 307 DLSRLS--SVPAVLSNPLVQKFQADRAVAQAKVDELAGRYGPKHPSLISAQTELRTATTS 364 Query: 189 AQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDT---LFLLGSEALESMIKHEA 245 Q Q + I+ Q A ++ + Q + + QD F L + + Sbjct: 365 LQLQVQQVVAGIERQYQLATASEASLRQSFNSNKAQIQDIARKEFQL--REFQREVDSTR 422 Query: 246 TRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLL 305 F +T D+D R V ++P+ P+K + + + L+ Sbjct: 423 ALYETFVTRLKETTA---------TADMDSTKVRIVDPAIVPVDASKPRKTLIVGIVGLI 473 Query: 306 GGMVGAGIVLGRNALRN 322 ++G G+ L +L N Sbjct: 474 AAVIGVGLALLFESLSN 490 >UniRef50_D2NP25 Thymidylate kinase n=2 Tax=Rothia mucilaginosa RepID=D2NP25_9MICC Length = 410 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 30/181 (16%), Positives = 66/181 (36%), Gaps = 7/181 (3%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA-IITQPDV 67 + L + + +++R ++ I++SV+V Y + K+TS A ++ P V Sbjct: 1 MDNTSHTSSVTLGNQVRRIFRHRLLILLSVVVFAVAGAVYGYMTNSKYTSKASLVVYPLV 60 Query: 68 GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKL--TIEPSV 125 AG +A + A + + + A +TL + +L +++ + Sbjct: 61 VDPAGTGSANSAKVDIATESRVASSREVAQNAAKSLIANGDTLSEAQLTSRLMNSVKVTG 120 Query: 126 KNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQ 185 +Q L + A + +V E LK ++ R + + + Sbjct: 121 TSQTAVLDIEVTRPNGTEAARYANA-MANAYLQVRSE---SLKSSVDSARHQIDEQISAL 176 Query: 186 E 186 E Sbjct: 177 E 177 >UniRef50_Q7NII1 Gll2202 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NII1_GLOVI Length = 699 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 58/185 (31%), Gaps = 22/185 (11%) Query: 158 KVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLR--IRQIQEALQYANQAQVTKP 215 + N+ DL IA L + + ++Q++L I + +AL + P Sbjct: 257 QANRRALADLDAEIARQSAQLGERHPQMINLREQQRELNRLIARRVKALGGSR-TGAVDP 315 Query: 216 QIQQTGEDITQDTLFLLGSE----ALESMIKHEATRPLVFSPN---YYQTRQNL------ 262 Q ++ L G ++E+ I R Q + + Sbjct: 316 VSQNITGQMSDLEARLSGGRQELASVEASINRYRGRLATLPERQVTLAQLDRQVQLDGAA 375 Query: 263 -----LDIESLKVDDLD-IHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLG 316 +E K+ + R V P + P + + +LG +GIV Sbjct: 376 YNLLASRLEEAKIAEAQTFANVRVVDPASEPEKPVWPNFPLLAVAGTVLGLGAASGIVAL 435 Query: 317 RNALR 321 A R Sbjct: 436 LEAGR 440 >UniRef50_B2A1C4 Lipopolysaccharide biosynthesis protein n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1C4_NATTJ Length = 522 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 36/74 (48%) Query: 2 RVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAI 61 R ++ Q+ ++IDL +L+ L + K I + VA+ LA + + +E + +T + Sbjct: 19 RQDHTVQENQDFGEQEIDLRELIEVLLKRKWLIAGIMAVAVFLAGIFTLLIREPYVATIL 78 Query: 62 ITQPDVGQIAGYNN 75 + D + Y + Sbjct: 79 DMEFDEIEQGEYPS 92 >UniRef50_A3V8G8 Protein-tyrosine kinase n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V8G8_9RHOB Length = 618 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 45/246 (18%), Positives = 83/246 (33%), Gaps = 31/246 (12%) Query: 18 IDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAV-AKEKWTSTAIITQPDVGQIAGYNNA 76 +D+ + LW GK ++++ +A+ +A Y A+ + A +T ++ + Sbjct: 17 VDIRHIFRVLWAGKWVVVLTTFLAVLMAGYYGFTIARPQ---HAAVTIIEIRTTQAF--- 70 Query: 77 MNVIYGQAAPKV---SDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLT 133 I GQ + V + +Q L A + D+ LT P + + L T Sbjct: 71 --AIPGQTSTDVPPGTQVQILLATPILEQVIAKLDLQDDPAFNRYLTPVPPLSPRGLRTT 128 Query: 134 VSYVGQTAEGAQMKLAQYIQQVDDKV--NQELEKDLKDNIALGRKNLQDSLRTQEVVAQE 191 + + L + V D +L ++L+ I + D LR Sbjct: 129 L----------RNLLQGRSEPVPDDAAIASKLVQNLRAAIRVETPRDSDLLRVTVTTGDP 178 Query: 192 QKDLRIRQIQEAL----QYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATR 247 + + I A+ Q A + T I G A+E+ I R Sbjct: 179 DRAMAIANTLAAVYLADQVARKQDATAASIALLGARSADLRSH---QAAIEAAITDLVAR 235 Query: 248 PLVFSP 253 + P Sbjct: 236 AGLHDP 241 >UniRef50_UPI000182721C cryptic autophosphorylating protein tyrosine kinase Etk n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI000182721C Length = 732 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 7/89 (7%) Query: 234 SEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSP 293 E L E+ R + Q N+ I R + + P Sbjct: 371 QEILRLSRDVESGRTIYLQLLTRQQELNISR-------SSAIGNVRIIDQAETQPEPIKP 423 Query: 294 KKAITLILAVLLGGMVGAGIVLGRNALRN 322 KKA+ ++L + G + G V+ AL+ Sbjct: 424 KKALIIVLGFVAGLALSLGYVIASVALKR 452 Score = 40.9 bits (94), Expect = 0.068, Method: Composition-based stats. Identities = 10/88 (11%), Positives = 29/88 (32%) Query: 4 ENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT 63 +N ++D + LL + ++ I+ ++ LA + + + A++ Sbjct: 5 NTDNYGAAAPQASEVDFVRLLGEAIDHRVKIVCITLLFTLLAGAWAFFTTPVYQADALVQ 64 Query: 64 QPDVGQIAGYNNAMNVIYGQAAPKVSDL 91 + N + G ++ Sbjct: 65 IESKQENGLLKNLGQLDSGLLPDATPEI 92 >UniRef50_A9ANS7 Capsular exopolysaccharide family n=45 Tax=Burkholderia RepID=A9ANS7_BURM1 Length = 741 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 31/224 (13%), Positives = 73/224 (32%), Gaps = 31/224 (13%) Query: 126 KNQQLPLTVSYVGQTAEG----AQMKLAQYIQQ--VDDKV-NQELEKDLKDNIALGRKNL 178 Q + +S G+ E A Y+ Q + + ++ LK + +L Sbjct: 249 GKQTGVVQISLEGKDPEQTAAIANALAQSYLHQHVIAKQAEATKMLDFLKGEEPRLKADL 308 Query: 179 QDSLRTQEVVAQEQKDLRIRQ-----IQEALQYANQAQVTKPQIQQTGEDITQDTLFLLG 233 + + + + ++ ++QY Q + Q+ + T ++ Sbjct: 309 ERAEAALTQYQRTSGSINASDEAKVYLEGSVQYEQQIAAQRLQLASLAQRFTDSHPLVIA 368 Query: 234 SEALESMIKHEATR-------PLVFSPNYYQTRQ--------NLLDIESLKVDDLDIHA- 277 ++ + ++ E + Q ++ +L + ++ + Sbjct: 369 AKQQLAELQGEKEKFSNRFRSLPATEVKAVQLQRDAKVAEDIYVLLLNRVQELSVQKAGT 428 Query: 278 ---YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 + + P PKK + L AV LG ++G G+V R Sbjct: 429 GGNIHLIDSALRPGAPVKPKKVLILSAAVFLGLILGTGVVFLRR 472 >UniRef50_Q0VR43 Tyrosine-protein kinase n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VR43_ALCBS Length = 736 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 4/133 (3%) Query: 4 ENNNVSGQNHDPE---QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 ENN++ + ID LL L + I + +VA+ AI Y+ A + A Sbjct: 3 ENNSMKRHLSANDAEPDIDFALLLAVLVEHWLLIASTAVVAMLAAISYVMFATPIYKGDA 62 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSA-FSALAETLDNQEEREKL 119 ++ + +N ++ Q + ++++ S L + Q ER L Sbjct: 63 LLQVEQKSSGVPGLSELNQMFEQESSTAAEIEILRSRMILREVISQLKMDIQVQPERNSL 122 Query: 120 TIEPSVKNQQLPL 132 + + + P Sbjct: 123 WGKMTAPDPAPPF 135 Score = 40.5 bits (93), Expect = 0.084, Method: Composition-based stats. Identities = 42/259 (16%), Positives = 91/259 (35%), Gaps = 18/259 (6%) Query: 66 DVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV 125 + +IA N ++ Q K L T G A+ +T+ N + + + Sbjct: 219 RLPEIAAINRLRGMLSVQEIGKTGMLSMTATGPDKQQIKAVLDTISNVYVLQNIERRSAE 278 Query: 126 KNQQLPLTVSYVGQTAE---GAQMKLAQY-IQQVDDKVNQELEKDLKDNIALGRKNLQDS 181 L + + E A+ KL Y ++ + E + L+ ++ L K + Sbjct: 279 AENSLAFLGKQLPEIKEKLTAAEEKLNAYRLESESVDLTMETQSVLERSVGLEAKINELK 338 Query: 182 LRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMI 241 ++ E+ ++ + + + + + Q + I + I Sbjct: 339 IQEGEIASRFTR----EHPTYQTLIRQRRSLVE-EKNQLDQQIKDLPKT-------QQEI 386 Query: 242 KHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLIL 301 V Y ++ LK + + R + + ++ PKK++ +++ Sbjct: 387 LRLMRDVEVTQQIYVGLLNKTQELRILKAGTVG--SVRIIDEALVQPAPIKPKKSLVVVI 444 Query: 302 AVLLGGMVGAGIVLGRNAL 320 A +LG AG+VL R+ L Sbjct: 445 ATMLGAGAAAGLVLMRSLL 463 >UniRef50_A3VCH3 Putative uncharacterized protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VCH3_9RHOB Length = 714 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 1/62 (1%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLA-VAKEKWTSTAI 61 + + + S +++DL+ LL +WRG+ I+ V VAI L++ Y+ +A K+ STA Sbjct: 1 MTDTSPSQPGIQEDELDLMRLLGLVWRGRWIILACVAVAIVLSMLYVRNIAVPKYASTAR 60 Query: 62 IT 63 + Sbjct: 61 LV 62 >UniRef50_Q2C5X1 Chain length regulator (Capsular polysaccharide biosynthesis) n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C5X1_9GAMM Length = 718 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 21/44 (47%) Query: 277 AYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 + R + PKKA+ ++LA L GGM+ IVL + Sbjct: 409 SVRLIDSAEASPIPIKPKKALIVVLATLFGGMLSIVIVLLKKNF 452 >UniRef50_Q1WTC7 Chain length regulator n=2 Tax=Lactobacillus salivarius RepID=Q1WTC7_LACS1 Length = 247 Score = 44.0 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 55/155 (35%), Gaps = 15/155 (9%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYL-AVAKEKWTSTAIITQPDVGQIAGYNN 75 ++DL ++ L R I++S ++ A Y ++TS I ++ Sbjct: 10 ELDLFEIFQMLLRHWWIILLSGLLCGLAAFTYSKFAVVPQYTSVTKIY------LSNKLT 63 Query: 76 AMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVS 135 + + D +E + R + + E D + +L+ + + +N+ +S Sbjct: 64 ENQTNPTPSTELIKDYEEMVKSR--AVLENIIEKHDLRYSYGELSKKVNAENKDETQIIS 121 Query: 136 YVGQTAEG--AQMKLAQYIQQVDDKVNQELEKDLK 168 AQ + D+ + + K +K Sbjct: 122 ISVTDPNPVVAQRLANS----IRDESIKHVTKVMK 152 >UniRef50_B7CA79 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CA79_9FIRM Length = 240 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 63/177 (35%), Gaps = 14/177 (7%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRG-KMTIIISVIVAIALAIGYLAVAKEKWT-STAIITQ 64 NV+ D + IDL+++ + + K+ I++ V+ G + K+T ST+I Sbjct: 14 NVANVEDDEDVIDLLEVARVILKHIKLIILLCVVFGAVGFFGTKFLIAPKYTASTSIYLT 73 Query: 65 PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPS 124 P V + + + V +L A + E + ++ IE + Sbjct: 74 PQVSDSGALDYNSQIANSKLVTNVVNLMTQNNVMSEVAKNVGMENAKSVKD----CIEVT 129 Query: 125 VKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDS 181 ++ +T++ + ++ K ++ N+ + + D Sbjct: 130 NESNTEIITITATTTDPKLSKDIANG--------TVDTFIKTMQKNLNVRNIEIVDK 178 >UniRef50_Q1ING6 Protein-tyrosine kinase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ING6_ACIBL Length = 711 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/148 (13%), Positives = 50/148 (33%), Gaps = 10/148 (6%) Query: 174 GRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQ-VTKPQIQQTGEDITQDTLFLL 232 ++ L + Q + + + A A+ + + + ++ Q + Sbjct: 329 KLVQMRAQLADLQSSIQSELGKISARAENDYLAAKNAEDMERALFAKQKQEANQINDSAV 388 Query: 233 GSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDS 292 L+ + + L D+ + V +P + S Sbjct: 389 QYGVLKREADANRDLYQTLLGKLKEA----GVLAGLHSSDILV-----VDSARVPDKPAS 439 Query: 293 PKKAITLILAVLLGGMVGAGIVLGRNAL 320 PK+ + L+L ++G ++G I L +++L Sbjct: 440 PKRLLNLVLGAVIGLILGVSIALLQDSL 467 >UniRef50_B1ZLN5 Lipopolysaccharide biosynthesis protein n=1 Tax=Methylobacterium populi BJ001 RepID=B1ZLN5_METPB Length = 563 Score = 44.0 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 53/325 (16%), Positives = 104/325 (32%), Gaps = 40/325 (12%) Query: 4 ENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII- 62 E + HDPE + DL+ + R + + + V++ A + Y+ +A+ ++ + A I Sbjct: 22 ETADPGPLGHDPETTLIGDLIAAVRRQALALALWVLLCTAAGVAYVLIAQPEFVAAAQIA 81 Query: 63 ------TQPDVGQIAGYNNAM-NVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEE 115 P A + QA +V ++ R+ L + + Sbjct: 82 LEPRVRLPPGADAAAAAAATAPTLDSAQAESQVQVIRSARNLRYVFDTLGLDKDPAYAAK 141 Query: 116 REKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGR 175 L + L ++ + E M + + ++ D I + R Sbjct: 142 GPGLVSRTLARISGLLPFLAAPPLSPEEEAM-----------RAREIAFQNFSDRIQVKR 190 Query: 176 KNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSE 235 EV + ++ A+ A + Q+ + + FL G Sbjct: 191 ---LGQSYVLEVSFRGLTPQDAARLTNAI----AAAYIRDQVLVRAASDQRGSEFLQGRI 243 Query: 236 ALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKK 295 AL K A + I + D D R V + P+ P+ Sbjct: 244 ALIQAQKKAADEAVATGV-----------ITDFQFPDSDA---RIVGAALRPLAAAYPQT 289 Query: 296 AITLILAVLLGGMVGAGIVLGRNAL 320 + L+L L G + G G + ++ Sbjct: 290 KLILLLGALFGLVSGIGCIAVLHSF 314 >UniRef50_A7HXH3 Non-specific protein-tyrosine kinase n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HXH3_PARL1 Length = 738 Score = 43.6 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 48/311 (15%), Positives = 94/311 (30%), Gaps = 67/311 (21%) Query: 22 DLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII---------------TQPD 66 ++L +W K I + + +A+AI +L +T I + P Sbjct: 32 EVLRGVWARKEIIACTFVAFMAVAIFWLMTVVPTYTVETRIMLSPRAGEISTFDADSTPS 91 Query: 67 VGQIAGYNNAMNVIYGQAAPK--VSDLQETLIGRFSSAFSA--------LAETLDNQEER 116 + + + V+ + ++DL F+ A A +A L ++++ Sbjct: 92 LPDNETLQSEIQVLTSRPLAARLITDLGLAAHPEFNPALRAPGFLGRIAVAFGLRDRQQP 151 Query: 117 EKLTIEPSV---------KNQQLPLTVSYVGQTAEGAQ----MKLAQYIQQVDDK---VN 160 + V K + + + A YI Q ++ VN Sbjct: 152 TDIEEITDVVLSRLEVFQKINSRVIAIVFTSADPRMAAIVPNRLAELYIAQQVEQKAGVN 211 Query: 161 QELEKDLKDNIALGRKNLQDSLRTQEV-VAQEQK---------DLRIRQIQEALQY---- 206 E + L IA R +Q S E A+ ++ + L Sbjct: 212 SEAARWLASQIAELRVKVQASEAAVEAFRAKSGLFLTNGSTLPQQQLTDLNSQLSVAEAD 271 Query: 207 ----------ANQAQVTKPQIQQTGEDITQDTLFLLGSE--ALESMIKHEATRPLVFSPN 254 A + + E + + L + AL + I + L P Sbjct: 272 RAAAQAKLSNARSLLASGNAVNSAAEVLQSPLIQNLRQQEVALRAQIAQMSETLLPTHPR 331 Query: 255 YYQTRQNLLDI 265 +++ NL D+ Sbjct: 332 MQESQANLDDL 342 >UniRef50_A4EII1 Protein-tyrosine kinase n=1 Tax=Roseobacter sp. CCS2 RepID=A4EII1_9RHOB Length = 654 Score = 43.6 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 32/199 (16%), Positives = 69/199 (34%), Gaps = 13/199 (6%) Query: 133 TVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQ-- 190 T + Q + AQ+ L + + ++ + +++ + LQ + AQ Sbjct: 208 TQTLDAQARDEAQVWLQSRVTTLRSQLETQ---EMQIAALIATAQLQQDRGLDTLSAQVL 264 Query: 191 --EQKDLRIRQIQEALQYANQAQV--TKPQIQQTGEDITQ-DTLFLLGSEALESMIKHEA 245 +Q R L+ A+ + + +I Q I+ +L S L + A Sbjct: 265 GADQNLTEARNTLALLEIASDSGSARNRAEIAQMHNKISDIASLKERLSAQLSAQSAGLA 324 Query: 246 TRPLVFSPNYYQTRQNLLDIESLKVDDLDI---HAYRYVMKPMLPIRRDSPKKAITLILA 302 + + + + L + + + P P+K + L +A Sbjct: 325 QLHQLQLQTDATRQLYQMFLGRLHENRMQQGLGTPQSLRVAPATHGVYIGPRKTLILTIA 384 Query: 303 VLLGGMVGAGIVLGRNALR 321 LLG +G +++ R+ R Sbjct: 385 ALLGIAIGVMVIVVRHNTR 403 >UniRef50_Q1QWU3 Protein-tyrosine kinase n=3 Tax=Gammaproteobacteria RepID=Q1QWU3_CHRSD Length = 731 Score = 43.6 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 70/198 (35%), Gaps = 14/198 (7%) Query: 127 NQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLK---DNIALGRKNLQDSLR 183 +++ ++ ++ + + +LA QQ++ ++ D+ ++ NL+ L Sbjct: 276 SEEARKSLEFLSKQVPEVRGELAGAEQQLNAYRSEHDSVDISMETKSVLDRVVNLESQLN 335 Query: 184 TQEVV-AQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIK 242 E A+ + A +AQ+ + ++ E I G + + Sbjct: 336 ELEFSEAEISRRFTPSHPTYAALLEKKAQLKR-ELNTLEERIN-------GMPETQQEVL 387 Query: 243 HEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILA 302 V Y Q R + +++ + + R + R SP K + + LA Sbjct: 388 RMQRDVSVNQAIYVQLRNKVQEMQIAEASTVG--NVRVLDDSESFPRPVSPNKIMIIALA 445 Query: 303 VLLGGMVGAGIVLGRNAL 320 +LG +V+ R Sbjct: 446 TILGAAFAVAVVMLRAMF 463 >UniRef50_A4VKD6 Tyrosine-protein kinase n=9 Tax=cellular organisms RepID=A4VKD6_PSEU5 Length = 736 Score = 43.6 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 1/72 (1%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII-TQ 64 S + +IDL ++ + K II + L + Y +A + +TA+I + Sbjct: 5 TRSSLEYDADNRIDLAGIMRTAYDHKALIIAITGLFTVLGVLYALIATPIYQATAMIQIE 64 Query: 65 PDVGQIAGYNNA 76 P I G Sbjct: 65 PKKAAITGIPEI 76 Score = 43.6 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 38/245 (15%), Positives = 82/245 (33%), Gaps = 45/245 (18%) Query: 114 EEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQ----YIQQVDDKVNQEL---EKD 166 + +++L + + K+ + +S + A L + Y+ Q + + E Sbjct: 231 DYQDRLKVGEAGKDSGIIY-MSLEDPDPQLASRVLDEISRLYVSQNIQRSSAEAAQRLDF 289 Query: 167 LKDNIALGRKNLQDSLRTQEVVAQEQKDLRI-----------------------RQIQEA 203 L+ + RK L+ + K + I +++ Sbjct: 290 LRSQLPQVRKELEKAEAALHDYQTSSKSVDISIETKGVLDQIVQLETQLSELTLKRVDYD 349 Query: 204 LQYANQAQVTKPQIQQTGEDITQDTLFLLGSEAL---ESMIKHEATRPLVFSPNYY---Q 257 Y + + + Q E Q L +AL + + V + Y Sbjct: 350 RLYTREHPTYRTLMSQMNELQAQKAQLLKKVDALPMTQQELLRLKRDMEVTTQTYTLLMN 409 Query: 258 TRQNLLDIESLKVDDLDI--HAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVL 315 Q + + + ++ I +AY KP P+ + + + LA+ +G +V A ++L Sbjct: 410 QAQEQDVLRAGTIGNVRIIDNAYSMTEKPSKPV------RPLVVALAIFVGLLVSAAVIL 463 Query: 316 GRNAL 320 R A Sbjct: 464 LRQAF 468 >UniRef50_UPI0001BC3702 exopolysaccharide tyrosine-protein kinase n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC3702 Length = 235 Score = 43.6 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYL-AVAKEKWTSTAII 62 + ++IDL+ +L L M I+I+ +V A Y V ++TSTA I Sbjct: 7 KNKNDEIDLMKILRMLASKWMFIVITAVVLAGAAFIYFNFVVTPRYTSTARI 58 >UniRef50_A4BR88 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BR88_9GAMM Length = 343 Score = 43.6 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 51/348 (14%), Positives = 109/348 (31%), Gaps = 59/348 (16%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN 74 ++I LIDL + L R K TI +++ + L + ++ V ++ I Sbjct: 10 DDEISLIDLWIILVRRKWTIAGVLLLCVLLGLAWVLVKPPRYQYETAI---------QIG 60 Query: 75 NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTV 134 ++ Q V + + + A D Q + P + L + V Sbjct: 61 EVLSGDALQPIEPVGAVLAKIQETYIPLARARLLAADAQGGFKLKARSP--EGSALLIVV 118 Query: 135 SYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKD 194 S G A+ + K+ ++ + ++ +++ K + + + + + Sbjct: 119 SGEGVPAQRSTYL----------KLLHDVLQQIQVDLSPRFKAARQATEREREGTESRLQ 168 Query: 195 L----------RIRQI-------QEALQYANQAQVTKPQIQQTG------EDITQDTLFL 231 + ++ + LQ + + Q+ G D L + Sbjct: 169 QLTAEAKLVQGELERLGSWNQVVERRLQIVR-TDLQTLREQRNGLLKRGLSDSADMRLIV 227 Query: 232 LGSEA--LESMIKHEATRPLVFSP--------NYYQTR----QNLLDIESLKVDDLDIHA 277 L + L+ I + + P Q + L ++ ++ + Sbjct: 228 LNGDIRTLQETIADLQEQLGKWIPAQRDGILSRLKQNQVDQSTQQLRMQEIEARAAALQP 287 Query: 278 YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 R V+ P + L LA +LG M+G L NA Sbjct: 288 TRAVLVPQRLPEPIGTGPVVILALAGVLGLMLGVFAAFFTEFLARANA 335 >UniRef50_A0NRN0 Lipopolysaccharide biosynthesis n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NRN0_9RHOB Length = 782 Score = 43.6 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 70/198 (35%), Gaps = 32/198 (16%) Query: 129 QLPLTVSYVGQTAEGAQMKLAQYIQQVDD-----KVNQELEKDLKDNIALGRKNLQDSLR 183 P S Q A A+ + + + +LE+ L++ I K + DS R Sbjct: 299 NSPTISSLRQQYATAARTEAQLMADLLPSHPSVAQSRSQLER-LRNLIRDEIKRIADSTR 357 Query: 184 TQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKH 243 V QE R+ ++++ L + Q L + Sbjct: 358 IDVQVNQE----RVSRLEQQLDSTRNL----SDVDQAASIR------------LRELETE 397 Query: 244 EATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAV 303 ++ + ++ + ++ + + + R + + P PK+ I +ILA Sbjct: 398 AQATRQLYEIALSRAKE-ISQLDQVVLPNA-----RIISPAIPPESPVYPKRKIMVILAG 451 Query: 304 LLGGMVGAGIVLGRNALR 321 +LG + G I +G A+R Sbjct: 452 ILGVLFGTMIAVGGEAIR 469 >UniRef50_P33698 Succinoglycan biosynthesis transport protein exoP n=7 Tax=Rhizobiaceae RepID=EXOP_RHIME Length = 786 Score = 43.6 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 88/255 (34%), Gaps = 46/255 (18%) Query: 66 DVGQIAGYNNAMNVIYGQAAPKV--SDLQETLIG----RFSSAFSALAETLDNQEEREKL 119 Q+A N+ + V A D ++++ + ++ DN R+ Sbjct: 264 SEQQMADLNSQLIVAQADTASASARYDQYKSIVDQGPENAVKNATISSKEGDNSVIRDLR 323 Query: 120 TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQ 179 T +V ++ ++ ++ Q V + QE D+ I + L Sbjct: 324 TRYLTVGKREREVSDNFGADHP-----------QAVSLRAEQE---DVARQIYQELQQLT 369 Query: 180 DSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALES 239 S + + VAQ ++ +++++Q I D ++ + L LE Sbjct: 370 ASYKNEYEVAQSRE----ESLRKSIQ----------GIAGKTSDASEQLVQLRE---LEQ 412 Query: 240 MIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITL 299 T + Y Q Q I R + + +P+ SPKK +TL Sbjct: 413 KAAALKTLYESYLGRYEQATQQQSFP---------IAKARVISEAGVPVSPSSPKKTMTL 463 Query: 300 ILAVLLGGMVGAGIV 314 L+ +LG MVG Sbjct: 464 ALSAVLGMMVGGAYA 478 >UniRef50_C3J7R8 Tyrosine-protein kinase ptk n=2 Tax=Bacteria RepID=C3J7R8_9PORP Length = 834 Score = 43.6 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 94/265 (35%), Gaps = 35/265 (13%) Query: 68 GQIAGYNNAMNVI--YGQAAPKVSDLQETLIG--RFSSAFSALAETLDNQEEREKLTIEP 123 G++ + + + A + + + G F+ + + L + P Sbjct: 299 GELGSVDTEIEQFKQNNRIADIQQEARSYITGTAEFARQMTEVNNKLAVANYLKDYLKSP 358 Query: 124 SVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLR 183 S K++ +P V +A+ + +Y + + + ++ + + L+ L Sbjct: 359 SSKDELIPANVGLNEASAD---NLIREYNSLLLRRDQLIANAETQNPVV---ETLEKQLA 412 Query: 184 TQEVVAQEQKDLRIRQIQ-EALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIK 242 + V + D I+ + +A QA + + +I +GS IK Sbjct: 413 SMHVAVVKSVDNLIKSLSVQAASINRQAGLNEGRISSVPMQEK-----TVGSIYRNQKIK 467 Query: 243 HEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHA----YRYVMKPMLPIRRDSPKKAIT 298 E L + + + + L + A R + M +P+K + Sbjct: 468 EE---------------LYLFLLNAREKNSLAMEAADSEIRLIQPAMGSSIPVAPRKGMI 512 Query: 299 LILAVLLGGMVGAGIVLGRNALRNY 323 L++A +LG ++ AG++ R + N Sbjct: 513 LLVAFILGLILPAGVLYLRFIINNK 537 >UniRef50_Q319N0 Uncharacterized protein involved in exopolysaccharide biosynthesis-like protein n=1 Tax=Prochlorococcus marinus str. MIT 9312 RepID=Q319N0_PROM9 Length = 558 Score = 43.6 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 47/313 (15%), Positives = 103/313 (32%), Gaps = 34/313 (10%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 S + E+IDL +L K TI + + L + + K+ W I Sbjct: 15 SQIDQSEEEIDLKNLFNIFIEKKKTIAGITLTSFLLGCSFALLQKKLWQGQFQIVLSGSD 74 Query: 69 QIAGYNNAM-------NVIYGQAAPKVSDLQETLIGRFS---------SAFSALAETLDN 112 + N A+ + + ++ E L + S + ++ Sbjct: 75 INSSMNLALPKNNPINKLFNNSSRNNINTELEILKSPYILLPIFEYVMSEKNISDYKVNK 134 Query: 113 QEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIA 172 EE +K +E KN L +SY + L + + Q + I Sbjct: 135 FEEWKKDYLEVKFKNNTNILDISYKDNDKDLIIPVLTK----ISKIYQQYSPNKKIETIN 190 Query: 173 LGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLL 232 L D + + + + ++AL ++ + ++ + +I +L Sbjct: 191 TKISYLDDQIDIYKEKYK-------KSFEKALNFSFEKGLSTNLFSEINPNIIDQNDGVL 243 Query: 233 GSEALESMIKHEAT-----RPLVFSPNYYQTRQNLLDIES-LKVDDLDIHAYRYVMKPML 286 + +E + + FS + + + I++ + ++ + Y V K Sbjct: 244 -IKNIEVKLDTLKNLEDSSALIAFSEANLISSEKIKRIKTIISEKEMQLIMYSKVYKDQD 302 Query: 287 PIRRDSPKKAITL 299 + +D K+ +TL Sbjct: 303 VVIKDIKKEILTL 315 >UniRef50_A1VT11 Lipopolysaccharide biosynthesis n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VT11_POLNA Length = 283 Score = 43.6 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 57/309 (18%), Positives = 101/309 (32%), Gaps = 56/309 (18%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 ++ L+D+LV L ++I +VA A+G V + + S A++ Sbjct: 10 STQETGLLDVLVTLAENLKLLLIGSLVAGLCALGISFVLPQTFQSVAVLQAEQPT----- 64 Query: 74 NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLT 133 V D +G A +TL+N + + I+ V LT Sbjct: 65 ------ASLMLTAAVLDPVIAAMGL------ARDDTLENTRLKLREQIKTVVGRNDKLLT 112 Query: 134 VSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQK 193 ++ + AQ + I+Q + + + + L Q AQ Sbjct: 113 LTVSSHAPQQAQAIASAVIRQTYQESR-------------PKGSARARLEAQLAEAQ--- 156 Query: 194 DLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSP 253 +++ A Q A+ + + + G + L +E L + Sbjct: 157 ----ARLKNA-QDASVGVLKRLESNGAGGANSGTELARGYAELLNA-------------- 197 Query: 254 NYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGI 313 T I L++ + + V P LP PKK + I A L G+ Sbjct: 198 ----TGAAQSQISLLEIQLEGLSEAQLVQSPTLPQSASQPKKGLIAIGATLATGLALLLF 253 Query: 314 VLGRNALRN 322 + R A RN Sbjct: 254 IFMRQAFRN 262 >UniRef50_Q7UU04 Probable exopolysaccharide biosynthesis protein n=1 Tax=Rhodopirellula baltica RepID=Q7UU04_RHOBA Length = 567 Score = 43.6 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 68/210 (32%), Gaps = 35/210 (16%) Query: 146 MKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQ 205 Q I+ + + + L D + + K L + + Q+ A + Sbjct: 309 TLQTQTIRGIPKATGDSMRQALYD-LEVRYKEQSVKLSEDHPKLKVLR----EQLAAATE 363 Query: 206 YANQAQVTKPQIQQTGEDITQDTLFLLGSE-----ALESMIKHEATRPLVFSPNYYQTRQ 260 A Q +PQ ++ + Q + LES K+ ++ Q + Sbjct: 364 IAQSEQGERPQTTESTNPLRQALMMSWQQTSTTLAGLESKRKNLVSQAESLHEELKQLNR 423 Query: 261 NLLDIESLK-------------------------VDDLDIHAYRYVMKPMLPIRRDSPKK 295 + + + L + + V +P L +++ PK+ Sbjct: 424 DEVHLAELSWETDLAEAEYMRTAENRDNARLIDQLSSGAVSEIAVVQEPSLGLKKVKPKR 483 Query: 296 AITLILAVLLGGMVGAGIVLGRNALRNYNA 325 +I L+LA +L G L R L + ++ Sbjct: 484 SILLVLAAMLAFGFGIVQALLRGLLLSPHS 513 >UniRef50_A3VRW3 Polysaccharide chain length determinant protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VRW3_9PROT Length = 509 Score = 43.6 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 36/281 (12%), Positives = 99/281 (35%), Gaps = 41/281 (14%) Query: 20 LIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNV 79 +I +++ LWR + I +A L +A+ + + S A + + + + V Sbjct: 14 IITIVIGLWRRRWLIAGIAWLAALLGWSAVALLPDLYESRAQVYINTDTALDATISDVAV 73 Query: 80 IYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQ-----EEREKLTIEPSV----KNQQL 130 + V ++ L+ + A LD + + + K+ + Q+ Sbjct: 74 RPNR-EKGVQVIRTQLLSSDNLEKVIYATGLDAEVEGPVDLQRKVASLAEAIRIEQTQEN 132 Query: 131 PLTVSYVGQTAEGAQMKLAQYIQ-QVDDKVNQ------ELEKDLKDNIALGRKNLQ---- 179 T Y + + AQ +A + ++ ++ ++L +AL L+ Sbjct: 133 YFTFKYADKDPQTAQRVVATLVDLFIEQNLSNATTDVGRAVQNLDRELALKESELKALDD 192 Query: 180 -----DSLRTQ-------EVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQD 227 S+ +V ++ ++ + ++ + L A + + + + Sbjct: 193 EIAVFKSVNADILAAEERKVRRRDSREGELARVSDLLSLARA------RESRLATALRET 246 Query: 228 TLFLLGS--EALESMIKHEATRPLVFSPNYYQTRQNLLDIE 266 + G +AL+ + ++ P+ + + + ++E Sbjct: 247 PRYAPGDDLDALKLRLATLQSQFTDNYPDIVRLKAQIAELE 287 >UniRef50_Q3SM15 Polysaccharide chain length determinant protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SM15_THIDA Length = 511 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 91/304 (29%), Gaps = 32/304 (10%) Query: 25 VQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA-------IITQPDVGQIAGYNNAM 77 W+ + I + + ++ + +++ ++A + +P + +A N Sbjct: 13 KAAWQRRWWGIAVAWLVCIVGWTWVMIIPDRYQASARVYVDTQTLLKPLLSGLAAEPNVE 72 Query: 78 NVIYGQAAPKVSDLQETLIGRFSSA--FSALAETLDNQEEREKLTIEPSVKNQQLPLTVS 135 I VS + R + + E + I + ++ T+S Sbjct: 73 QQIKLMTRQLVSRPTLEKVARMTDLDVRANSPEQTEAMLNGLASKISIADAGRENLYTIS 132 Query: 136 YVGQTAEGA----QMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQE 191 Y E A Q L +++ K Q++ + I + Q L E +E Sbjct: 133 YQDANGELAKKVVQSLLTIFVESSLGKTRQDISSS-QRFIEEQLQQYQQKLTDAENALKE 191 Query: 192 QKDLRIRQI-----QEALQYANQ-AQVTKPQIQQTGEDITQDTL---FLLGSEALESMIK 242 K I + + A AQ+ + Q+ Q ++ L L + Sbjct: 192 FKQKNIGMMPGQGGDYYAKLAEASAQLRQAQLDQQEAVNRRNQLKRQLADEEPELTAAAA 251 Query: 243 HEATRPLVFSPNYYQTRQNLLDIE--------SLKVDDLDIHAYRYVMKPMLPIRRDSPK 294 AT + ++ + + ++ I K L ++ P Sbjct: 252 AVATDSEI-DGRIQALQKQMDQLRLQYTELHPDIQATKRLIEKLEAQKKADLAQKKADPA 310 Query: 295 KAIT 298 A Sbjct: 311 GARI 314 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P35272 Chain length determinant protein n=110 Tax=Enter... 244 3e-63 UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmon... 219 2e-55 UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10... 190 5e-47 UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=En... 189 9e-47 UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enter... 186 8e-46 UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yers... 185 1e-45 UniRef50_P26266 Ferric enterobactin transport protein fepE n=158... 183 5e-45 UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannhei... 182 1e-44 UniRef50_Q31F07 Lipopolysaccharide biosynthesis protein Wzz n=1 ... 182 1e-44 UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersini... 178 2e-43 UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=1... 177 5e-43 UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aerom... 176 8e-43 UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=... 174 4e-42 UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 T... 173 6e-42 UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Pr... 172 2e-41 UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Provide... 171 4e-41 UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropn... 170 7e-41 UniRef50_Q8KN75 Wzz n=1 Tax=Pseudomonas aeruginosa RepID=Q8KN75_... 169 9e-41 UniRef50_A7JUL8 O-antigen chain length determining protein n=2 T... 168 2e-40 UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photoba... 167 4e-40 UniRef50_UPI000197BC0B ferric enterobactin transport protein Fep... 165 2e-39 UniRef50_Q02PW5 O-antigen chain length regulator n=19 Tax=Pseudo... 163 5e-39 UniRef50_A5KZS4 Regulator of length of O-antigen component of li... 163 1e-38 UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C... 162 1e-38 UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 T... 162 2e-38 UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycete... 162 2e-38 UniRef50_UPI000197C816 regulator of length of O-antigen componen... 161 3e-38 UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuni... 160 4e-38 UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0... 160 5e-38 UniRef50_C9P0B3 Lipopolysaccharide biosynthesis n=1 Tax=Vibrio c... 160 7e-38 UniRef50_Q1QWX5 Lipopolysaccharide biosynthesis n=1 Tax=Chromoha... 157 4e-37 UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio ... 156 1e-36 UniRef50_Q8KNB4 Wzz n=2 Tax=Pseudomonas aeruginosa RepID=Q8KNB4_... 155 1e-36 UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 T... 155 2e-36 UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae Re... 153 6e-36 UniRef50_A4C8G6 OtnB protein n=1 Tax=Pseudoalteromonas tunicata ... 153 1e-35 UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n... 152 1e-35 UniRef50_Q1N5G1 Lipopolysaccharide biosynthesis n=1 Tax=Bermanel... 152 2e-35 UniRef50_A4Y8H9 Lipopolysaccharide biosynthesis n=30 Tax=Gammapr... 151 3e-35 UniRef50_Q5R093 Chain length determinant protein n=1 Tax=Idiomar... 151 3e-35 UniRef50_C9P0E2 Regulator of length of O-antigen component of li... 150 5e-35 UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 149 1e-34 UniRef50_D0Z7Z5 Chain length determinant protein n=1 Tax=Edwards... 148 2e-34 UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersi... 147 5e-34 UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Ph... 147 5e-34 UniRef50_UPI0001C34705 lipopolysaccharide biosynthesis protein n... 146 9e-34 UniRef50_C7RAP5 Lipopolysaccharide biosynthesis protein n=1 Tax=... 143 6e-33 UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 T... 136 1e-30 UniRef50_A6F1J1 Chain length determinant protein n=1 Tax=Marinob... 135 2e-30 UniRef50_C3KAZ7 Putative chain length determinant protein n=1 Ta... 135 3e-30 UniRef50_A7I0H6 Chain length determinant protein n=1 Tax=Campylo... 133 9e-30 UniRef50_A6ASH0 OtnB protein n=10 Tax=Vibrio RepID=A6ASH0_VIBHA 129 2e-28 UniRef50_B0KTY6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 129 2e-28 UniRef50_A0B7Q9 Lipopolysaccharide biosynthesis n=1 Tax=Methanos... 129 2e-28 UniRef50_Q21IT7 Lipopolysaccharide biosynthesis n=1 Tax=Saccharo... 128 2e-28 UniRef50_Q1YPV1 OtnB protein n=1 Tax=gamma proteobacterium HTCC2... 128 2e-28 UniRef50_C1F864 Chain length determinant protein domain protein ... 126 1e-27 UniRef50_O66795 Putative uncharacterized protein n=1 Tax=Aquifex... 125 1e-27 UniRef50_B5JNI6 Chain length determinant protein n=1 Tax=Verruco... 125 2e-27 UniRef50_Q2LWK4 Hypothetical membrane protein n=1 Tax=Syntrophus... 125 3e-27 UniRef50_A8FXK9 Chain length determinant family protein n=1 Tax=... 121 3e-26 UniRef50_Q39TL3 Lipopolysaccharide biosynthesis n=1 Tax=Geobacte... 121 4e-26 UniRef50_A1SRR6 Chain length determinant protein-like protein n=... 120 7e-26 UniRef50_C5V7I4 Lipopolysaccharide biosynthesis protein n=1 Tax=... 120 8e-26 UniRef50_P44063 Uncharacterized protein HI0866 n=7 Tax=Haemophil... 117 5e-25 UniRef50_B3E8V9 Lipopolysaccharide biosynthesis protein n=4 Tax=... 116 7e-25 UniRef50_C4KCI7 Lipopolysaccharide biosynthesis protein n=1 Tax=... 116 9e-25 UniRef50_B9ZNL2 Lipopolysaccharide biosynthesis protein n=1 Tax=... 116 9e-25 UniRef50_C7M6P7 Lipopolysaccharide biosynthesis protein n=2 Tax=... 116 1e-24 UniRef50_Q2SJH6 Uncharacterized protein involved in exopolysacch... 115 2e-24 UniRef50_D0WWA9 Putative uncharacterized protein n=3 Tax=Vibrio ... 115 3e-24 UniRef50_Q74C20 Capsule polysaccharide export protein, putative ... 114 5e-24 UniRef50_A7AKH2 Putative uncharacterized protein n=2 Tax=Parabac... 113 1e-23 UniRef50_A4BIX4 Putative uncharacterized protein n=1 Tax=Reineke... 113 1e-23 UniRef50_C1DT90 Ferric enterobactin transport protein n=1 Tax=Su... 112 2e-23 UniRef50_C1XU43 Chain length determinant protein n=1 Tax=Meiothe... 110 6e-23 UniRef50_B0K509 Lipopolysaccharide biosynthesis protein n=14 Tax... 109 2e-22 UniRef50_A4SDR7 Lipopolysaccharide biosynthesis protein n=2 Tax=... 108 2e-22 UniRef50_B7AIQ3 Putative uncharacterized protein n=2 Tax=Bactero... 107 5e-22 UniRef50_A3JJA1 Lipopolysaccharide biosynthesis n=1 Tax=Marinoba... 107 6e-22 UniRef50_Q39VZ4 Lipopolysaccharide biosynthesis n=5 Tax=Geobacte... 106 9e-22 UniRef50_D1PXM6 Chain length determinant protein n=1 Tax=Prevote... 105 2e-21 UniRef50_C9PY96 Chain length determinant protein n=1 Tax=Prevote... 104 5e-21 UniRef50_C1TR41 Uncharacterized protein involved in exopolysacch... 104 5e-21 UniRef50_B1XZS2 Lipopolysaccharide biosynthesis protein n=1 Tax=... 103 9e-21 UniRef50_C6MYW2 Putative Wzz n=1 Tax=Legionella drancourtii LLAP... 103 1e-20 UniRef50_C0QSZ0 Chain length determinant protein n=1 Tax=Perseph... 103 1e-20 UniRef50_Q2T3S0 Chain length determinant protein domain protein ... 102 1e-20 UniRef50_Q21Z35 Lipopolysaccharide biosynthesis n=1 Tax=Rhodofer... 102 2e-20 UniRef50_C8X034 Lipopolysaccharide biosynthesis protein n=1 Tax=... 101 3e-20 UniRef50_D1B3W3 Lipopolysaccharide biosynthesis protein n=1 Tax=... 101 3e-20 UniRef50_B8D183 Lipopolysaccharide biosynthesis protein n=1 Tax=... 101 5e-20 UniRef50_C8PNG3 Chain length determinant protein n=1 Tax=Trepone... 100 7e-20 UniRef50_C6NU30 Lipopolysaccharide biosynthesis n=1 Tax=Acidithi... 100 1e-19 UniRef50_Q1NTS5 Lipopolysaccharide biosynthesis n=1 Tax=delta pr... 100 1e-19 UniRef50_B5ZNF2 Lipopolysaccharide biosynthesis protein n=8 Tax=... 100 1e-19 UniRef50_C9MSS5 Chain length determinant protein n=2 Tax=Prevote... 100 1e-19 UniRef50_B8KUX8 Chain length determinant protein n=1 Tax=gamma p... 98 4e-19 UniRef50_Q0YTR7 Lipopolysaccharide biosynthesis n=1 Tax=Chlorobi... 98 5e-19 UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 T... 97 1e-18 UniRef50_A6TJR1 Lipopolysaccharide biosynthesis protein n=1 Tax=... 95 2e-18 UniRef50_C2M1S4 Putative uncharacterized protein n=1 Tax=Capnocy... 95 3e-18 UniRef50_B5YEW0 Lipopolysaccharide biosynthesis n=1 Tax=Dictyogl... 95 3e-18 UniRef50_C9LJ77 Chain length determinant protein n=1 Tax=Prevote... 95 3e-18 UniRef50_B8E0I3 Lipopolysaccharide biosynthesis protein n=1 Tax=... 94 5e-18 UniRef50_C6JIE9 Predicted protein n=2 Tax=Fusobacterium RepID=C6... 94 6e-18 UniRef50_C9RRK0 Capsular exopolysaccharide family n=1 Tax=Fibrob... 93 1e-17 UniRef50_Q1ITA8 Lipopolysaccharide biosynthesis n=1 Tax=Candidat... 92 2e-17 UniRef50_B8GTU6 Putative uncharacterized protein n=1 Tax=Thioalk... 91 6e-17 UniRef50_B2U7B5 Lipopolysaccharide biosynthesis protein n=1 Tax=... 91 6e-17 UniRef50_C4K3Z7 Regulator of length of O-antigen component of li... 91 7e-17 UniRef50_D0MG08 Lipopolysaccharide biosynthesis protein n=1 Tax=... 90 8e-17 UniRef50_A4BYL5 Putative uncharacterized protein n=1 Tax=Polarib... 90 9e-17 UniRef50_B0VFR9 Putative uncharacterized protein n=1 Tax=Candida... 90 1e-16 UniRef50_B2JKP4 Exopolysaccharide transport protein family n=1 T... 89 2e-16 UniRef50_A3JHV6 Putative uncharacterized protein n=1 Tax=Marinob... 88 3e-16 UniRef50_D2QRK9 Lipopolysaccharide biosynthesis protein n=1 Tax=... 88 5e-16 UniRef50_Q7NQT3 Putative uncharacterized protein n=1 Tax=Chromob... 87 8e-16 UniRef50_B9L6P5 Chain length determinant protein n=2 Tax=Nautili... 87 1e-15 UniRef50_A3SUA0 Putative uncharacterized protein n=3 Tax=Rhodoba... 86 1e-15 UniRef50_A4EGG2 Succinoglycan biosynthesis transport protein exo... 86 2e-15 UniRef50_Q7NZZ7 Putative uncharacterized protein n=1 Tax=Chromob... 85 3e-15 UniRef50_B5WI70 Capsular exopolysaccharide family n=1 Tax=Burkho... 84 6e-15 UniRef50_O52788 Tyrosine-protein kinase ptk n=4 Tax=Acinetobacte... 84 7e-15 UniRef50_B8IGI5 Lipopolysaccharide biosynthesis protein n=1 Tax=... 84 7e-15 UniRef50_B2I037 ATPase n=12 Tax=Acinetobacter RepID=B2I037_ACIBC 83 9e-15 UniRef50_D0MHQ9 Capsular exopolysaccharide family n=1 Tax=Rhodot... 83 1e-14 UniRef50_Q6AS85 Putative uncharacterized protein n=1 Tax=Desulfo... 83 1e-14 UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinob... 83 1e-14 UniRef50_C0VIY7 Protein tyrosine kinase n=4 Tax=Acinetobacter Re... 83 2e-14 UniRef50_Q489D4 Tyrosine-protein kinase n=7 Tax=Gammaproteobacte... 82 2e-14 UniRef50_Q6AS84 Putative uncharacterized protein n=1 Tax=Desulfo... 82 3e-14 UniRef50_B1KCB3 Exopolysaccharide transport protein family n=2 T... 82 3e-14 UniRef50_Q84GX2 Orf41 n=3 Tax=Photorhabdus RepID=Q84GX2_PHOLU 82 3e-14 UniRef50_A1WZL7 Lipopolysaccharide biosynthesis n=1 Tax=Halorhod... 82 4e-14 UniRef50_A0NNU3 Putative MPA1 family protein n=1 Tax=Labrenzia a... 82 4e-14 UniRef50_A5UI14 Putative uncharacterized protein n=2 Tax=Haemoph... 82 4e-14 UniRef50_B7J3H5 Chain length determinant family protein n=2 Tax=... 81 5e-14 UniRef50_Q13NU9 Exopolysaccharide transport protein n=1 Tax=Burk... 81 6e-14 UniRef50_B2AHI0 Tyrosine-protein kinase n=5 Tax=Cupriavidus RepI... 79 2e-13 UniRef50_A6UI93 Lipopolysaccharide biosynthesis protein n=2 Tax=... 79 2e-13 UniRef50_B0VJW4 Putative Non-specific protein-tyrosine kinase n=... 78 3e-13 UniRef50_A0NMI4 Probable succinoglycan transport protein n=1 Tax... 78 4e-13 UniRef50_A9W3V2 Lipopolysaccharide biosynthesis protein n=6 Tax=... 78 5e-13 UniRef50_A6F1J4 Lipopolysaccharide biosynthesis n=1 Tax=Marinoba... 78 5e-13 UniRef50_B2PVB4 Putative uncharacterized protein n=3 Tax=Provide... 78 6e-13 UniRef50_C6BDG9 Lipopolysaccharide biosynthesis protein n=1 Tax=... 77 6e-13 UniRef50_UPI00016A48EE exopolysaccharide transport protein famil... 77 7e-13 UniRef50_B2TEB6 Exopolysaccharide transport protein family n=5 T... 77 9e-13 UniRef50_B6B6U1 Succinoglycan biosynthesis transport protein Exo... 77 9e-13 UniRef50_Q15NN8 Protein-tyrosine kinase n=1 Tax=Pseudoalteromona... 77 1e-12 UniRef50_B7RJK1 Protein-tyrosine kinase, putative n=3 Tax=Rhodob... 76 1e-12 UniRef50_D1BLU6 Lipopolysaccharide biosynthesis protein n=3 Tax=... 76 1e-12 UniRef50_C5CQW3 Exopolysaccharide transport protein family n=1 T... 76 1e-12 UniRef50_A6VA35 Chain length determinant protein n=7 Tax=Pseudom... 76 2e-12 UniRef50_P58764 Tyrosine-protein kinase etk n=184 Tax=Enterobact... 76 2e-12 UniRef50_B1M5X9 Lipopolysaccharide biosynthesis protein n=1 Tax=... 75 2e-12 UniRef50_Q65SG7 GumC protein n=2 Tax=Pasteurellaceae RepID=Q65SG... 75 3e-12 UniRef50_Q2CAF1 Putative uncharacterized protein n=2 Tax=Rhodoba... 75 4e-12 UniRef50_Q13QA8 Protein-tyrosine kinase n=3 Tax=Burkholderia Rep... 74 6e-12 UniRef50_A4JQJ9 Lipopolysaccharide biosynthesis n=1 Tax=Burkhold... 74 6e-12 UniRef50_D2RIR1 Lipopolysaccharide biosynthesis protein n=1 Tax=... 73 1e-11 UniRef50_C3K6I8 Conserved hypothetical chain length determinant ... 73 1e-11 UniRef50_B6C223 Chain length determinant protein n=1 Tax=Nitroso... 73 2e-11 UniRef50_A6BAV1 OtnB protein (Fragment) n=1 Tax=Vibrio parahaemo... 71 5e-11 UniRef50_Q220Z3 Lipopolysaccharide biosynthesis n=6 Tax=Betaprot... 71 6e-11 UniRef50_A3WQF3 Putative tyrosine-protein kinase Wzc (Fragment) ... 71 6e-11 UniRef50_Q3K9H3 Tyrosine-protein kinase n=4 Tax=Pseudomonadaceae... 70 7e-11 UniRef50_C7LVW8 Capsular exopolysaccharide family n=1 Tax=Desulf... 70 8e-11 UniRef50_Q7U940 Putative uncharacterized protein n=1 Tax=Synecho... 70 9e-11 UniRef50_Q0FE97 OtnB protein n=1 Tax=Rhodobacterales bacterium H... 70 9e-11 UniRef50_C4FKG4 Lipopolysaccharide biosynthesis protein (Fragmen... 70 1e-10 UniRef50_C6BLZ1 Putative uncharacterized protein n=2 Tax=Ralston... 70 1e-10 UniRef50_Q4JZ56 Capsular polysaccharide biosynthesis protein Wzd... 69 2e-10 UniRef50_B8F354 Tyrosine kinase, chain length regulator in capsu... 69 2e-10 UniRef50_A4C494 Exopolysaccharide biosynthesis protein, putative... 69 2e-10 UniRef50_A8UTW4 Putative uncharacterized protein n=1 Tax=Hydroge... 69 3e-10 UniRef50_C5BJM9 Putative OtnB protein n=1 Tax=Teredinibacter tur... 68 3e-10 UniRef50_A9WAT9 Lipopolysaccharide biosynthesis protein n=2 Tax=... 68 5e-10 UniRef50_B6BQX7 Chain length determinant protein n=1 Tax=Candida... 67 8e-10 UniRef50_D2PZ20 Lipopolysaccharide biosynthesis protein n=1 Tax=... 67 1e-09 UniRef50_Q97SJ6 Capsular polysaccharide biosynthesis protein cps... 67 1e-09 UniRef50_B3EME9 Capsular exopolysaccharide family n=3 Tax=Chloro... 66 2e-09 UniRef50_B8CL31 Chain length regulator (Capsular polysaccharide ... 66 2e-09 UniRef50_Q5P6W3 Putative uncharacterized protein n=1 Tax=Aromato... 65 3e-09 UniRef50_Q08U06 Chain length determinant protein n=1 Tax=Stigmat... 65 3e-09 UniRef50_C0BRP2 Putative uncharacterized protein n=2 Tax=Bifidob... 64 8e-09 UniRef50_Q0AAI3 Putative uncharacterized protein n=1 Tax=Alkalil... 64 9e-09 Sequences not found previously or not previously below threshold: UniRef50_C5BSK8 Chain length determinant protein n=1 Tax=Teredin... 100 1e-19 UniRef50_Q5LEP2 Conserved hypothetical membrane protein n=13 Tax... 94 8e-18 UniRef50_B3C5C8 Putative uncharacterized protein n=1 Tax=Bactero... 91 4e-17 UniRef50_A4SDR9 Lipopolysaccharide biosynthesis protein n=2 Tax=... 88 5e-16 UniRef50_B5CXQ8 Putative uncharacterized protein n=1 Tax=Bactero... 87 8e-16 UniRef50_A0LGD5 Lipopolysaccharide biosynthesis n=1 Tax=Syntroph... 84 8e-15 UniRef50_Q1NU90 Lipopolysaccharide biosynthesis n=1 Tax=delta pr... 81 4e-14 UniRef50_D1CAL1 Capsular exopolysaccharide family n=1 Tax=Sphaer... 79 3e-13 UniRef50_A4BR88 Putative uncharacterized protein n=1 Tax=Nitroco... 78 4e-13 UniRef50_B1M553 Lipopolysaccharide biosynthesis protein n=1 Tax=... 78 4e-13 UniRef50_B3ELK8 Lipopolysaccharide biosynthesis protein n=1 Tax=... 77 1e-12 UniRef50_A3W156 Putative succinoglycan biosynthesis transport pr... 77 1e-12 UniRef50_D0MGZ9 Lipopolysaccharide biosynthesis protein n=1 Tax=... 75 2e-12 UniRef50_D1QTS5 Chain length determinant protein n=1 Tax=Prevote... 75 4e-12 UniRef50_Q1Q1R5 Similar to Succinoglycan biosynthesis transport ... 74 7e-12 UniRef50_A9ANS7 Capsular exopolysaccharide family n=45 Tax=Burkh... 74 7e-12 UniRef50_B1FTG2 Exopolysaccharide transport protein family n=4 T... 73 2e-11 UniRef50_C3KRX1 CPSC/CAPB subfamily ATPase n=5 Tax=Rhizobiales R... 73 2e-11 UniRef50_B0UKX0 Lipopolysaccharide biosynthesis protein n=1 Tax=... 72 2e-11 UniRef50_Q0AE90 Lipopolysaccharide biosynthesis n=2 Tax=Nitrosom... 72 3e-11 UniRef50_B1I5B3 Lipopolysaccharide biosynthesis n=1 Tax=Candidat... 72 3e-11 UniRef50_C4Z673 Non-specific protein-tyrosine kinase n=1 Tax=Eub... 71 4e-11 UniRef50_B2TDM9 Exopolysaccharide transport protein family n=1 T... 71 5e-11 UniRef50_UPI000182721C cryptic autophosphorylating protein tyros... 71 5e-11 UniRef50_C5S677 Putative uncharacterized protein n=1 Tax=Allochr... 71 5e-11 UniRef50_B5S582 Putative tyrosine-protein kinase epsb , polysacc... 70 1e-10 UniRef50_Q13ZQ0 Protein-tyrosine kinase n=1 Tax=Burkholderia xen... 69 2e-10 UniRef50_A3V8G8 Protein-tyrosine kinase n=1 Tax=Loktanella vestf... 69 2e-10 UniRef50_Q0VR43 Tyrosine-protein kinase n=1 Tax=Alcanivorax bork... 69 2e-10 UniRef50_C9RR06 Lipopolysaccharide biosynthesis protein n=1 Tax=... 69 2e-10 UniRef50_C6ITG8 Lipopolysaccharide biosynthesis protein n=26 Tax... 68 3e-10 UniRef50_Q48452 Putative tyrosine-protein kinase in cps region n... 68 3e-10 UniRef50_D1C2W2 Capsular exopolysaccharide family n=1 Tax=Sphaer... 68 4e-10 UniRef50_D1PA57 Chain length determinant protein n=1 Tax=Prevote... 68 6e-10 UniRef50_B2JS55 Capsular exopolysaccharide family n=1 Tax=Burkho... 67 6e-10 UniRef50_Q1AYJ4 Protein-tyrosine kinase n=3 Tax=Rubrobacter xyla... 67 7e-10 UniRef50_B8HNB0 Capsular exopolysaccharide family n=1 Tax=Cyanot... 67 7e-10 UniRef50_A8GFV4 Non-specific protein-tyrosine kinase n=4 Tax=Ent... 67 8e-10 UniRef50_B3QV13 Lipopolysaccharide biosynthesis protein n=1 Tax=... 67 8e-10 UniRef50_B2JT53 Capsular exopolysaccharide family n=1 Tax=Burkho... 67 1e-09 UniRef50_C9RP30 Capsular exopolysaccharide family n=1 Tax=Fibrob... 67 1e-09 UniRef50_B3C5B9 Putative uncharacterized protein n=1 Tax=Bactero... 66 1e-09 UniRef50_A8F8H6 Lipopolysaccharide biosynthesis protein n=1 Tax=... 66 1e-09 UniRef50_UPI0001C16095 Lipopolysaccharide biosynthesis n=2 Tax=N... 66 2e-09 UniRef50_B2IJA7 Capsular exopolysaccharide family n=1 Tax=Beijer... 66 2e-09 UniRef50_A4VKD6 Tyrosine-protein kinase n=9 Tax=cellular organis... 65 3e-09 UniRef50_Q01X01 Lipopolysaccharide biosynthesis n=1 Tax=Candidat... 65 3e-09 UniRef50_Q0FSG4 Exopolysaccharide polymerization/transport prote... 65 3e-09 UniRef50_B5WFM2 Exopolysaccharide transport protein family n=1 T... 65 3e-09 UniRef50_B9QVY7 Chain length determinant protein n=1 Tax=Labrenz... 65 4e-09 UniRef50_B2T0G2 Capsular exopolysaccharide family n=2 Tax=Burkho... 65 5e-09 UniRef50_A9BJS3 Capsular exopolysaccharide family n=1 Tax=Petrot... 64 5e-09 UniRef50_A4AB87 Chain length determinant protein n=2 Tax=unclass... 64 6e-09 UniRef50_A9EY54 Succinoglycan biosynthesis transport protein exo... 64 6e-09 UniRef50_A3W0H6 Chain length determinant protein, putative n=2 T... 64 7e-09 UniRef50_Q1ING6 Protein-tyrosine kinase n=1 Tax=Candidatus Korib... 64 7e-09 UniRef50_Q2S4Z4 Chain length determinant protein n=1 Tax=Salinib... 64 7e-09 UniRef50_Q0AW94 Capsular polysaccharide biosynthesis protein-lik... 64 7e-09 UniRef50_A1AT07 Lipopolysaccharide biosynthesis n=3 Tax=Desulfur... 64 8e-09 UniRef50_A3K8W6 Chain length determinant protein, putative n=3 T... 63 9e-09 UniRef50_Q2C5X1 Chain length regulator (Capsular polysaccharide ... 63 1e-08 UniRef50_D0IV48 Lipopolysaccharide biosynthesis n=2 Tax=Comamona... 63 1e-08 >UniRef50_P35272 Chain length determinant protein n=110 Tax=Enterobacteriaceae RepID=WZZB3_ECOLX Length = 325 Score = 244 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 315/326 (96%), Positives = 320/326 (98%), Gaps = 1/326 (0%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA Sbjct: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLT 120 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEE EKLT Sbjct: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEPEKLT 120 Query: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD 180 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD Sbjct: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD 180 Query: 181 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESM 240 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQT +D+TQDT+FLLGSEALESM Sbjct: 181 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQT-QDVTQDTMFLLGSEALESM 239 Query: 241 IKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLI 300 IKHEATRPLVFS NYYQTRQNLLDI++L VD LDIHAYRYVMKP LPIRRDSPKKAITLI Sbjct: 240 IKHEATRPLVFSSNYYQTRQNLLDIDNLDVDKLDIHAYRYVMKPTLPIRRDSPKKAITLI 299 Query: 301 LAVLLGGMVGAGIVLGRNALRNYNAK 326 LAVLLGGMVGAGIVLGRNALRNYNAK Sbjct: 300 LAVLLGGMVGAGIVLGRNALRNYNAK 325 >UniRef50_Q04866 Chain length determinant protein n=30 Tax=Salmonella enterica RepID=WZZB_SALTY Length = 327 Score = 219 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 229/326 (70%), Positives = 276/326 (84%), Gaps = 1/326 (0%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M V++N SG+ +DPEQIDLI+LL+QLWRGKMTII++VI+AI LA+GYL +AKEKWTSTA Sbjct: 1 MTVDSNTSSGRGNDPEQIDLIELLLQLWRGKMTIIVAVIIAILLAVGYLMIAKEKWTSTA 60 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLT 120 IITQPD Q+A Y NA+NV+YG APK+S++Q I RFSSAFSAL+E LDNQ+EREKLT Sbjct: 61 IITQPDAAQVATYTNALNVLYGGNAPKISEVQANFISRFSSAFSALSEVLDNQKEREKLT 120 Query: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD 180 IE SVK Q LPL+VSYV TAEGAQ +LA+YIQQVD++V +ELE DLKDNI L K LQ+ Sbjct: 121 IEQSVKGQALPLSVSYVSTTAEGAQRRLAEYIQQVDEEVAKELEVDLKDNITLQTKTLQE 180 Query: 181 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESM 240 SL TQEVVAQEQKDLRI+QI+EAL+YA++A+ Q +D+TQDT+FLLGS+AL+SM Sbjct: 181 SLETQEVVAQEQKDLRIKQIEEALRYADEAK-ITQPQIQQTQDVTQDTMFLLGSDALKSM 239 Query: 241 IKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLI 300 I++EATRPLVFSP YYQT+Q LLDI++LKV +H YRYVMKP LP+RRDSPK AITL+ Sbjct: 240 IQNEATRPLVFSPAYYQTKQTLLDIKNLKVTADTVHVYRYVMKPTLPVRRDSPKTAITLV 299 Query: 301 LAVLLGGMVGAGIVLGRNALRNYNAK 326 LAVLLGGM+GAGIVLGRNALR+Y K Sbjct: 300 LAVLLGGMIGAGIVLGRNALRSYKPK 325 >UniRef50_C4UHK4 Chain length determinant family protein Wzz n=10 Tax=Yersinia RepID=C4UHK4_YERRU Length = 384 Score = 190 bits (482), Expect = 5e-47, Method: Composition-based stats. Identities = 67/360 (18%), Positives = 147/360 (40%), Gaps = 36/360 (10%) Query: 2 RVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAI 61 + N S + ++ID+ +L ++R K+ II+ ++ + + + +KWTST+I Sbjct: 14 KPNNYGFSDMSSSKDEIDIFELFTIIFRSKLKIILVTLIFLISGLVVSYILPQKWTSTSI 73 Query: 62 ITQPDVGQIAGYNNAM---NVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEERE- 117 I Q+ + V+ + L T F S ++ ++ Sbjct: 74 IVPAGEEQLQVLDKITINLAVLDINLGITSNYLLSTFKQNFDSQDLREQYLINTDYFKQM 133 Query: 118 ---------------------------KLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQ 150 + + N+ +SY TA A+ L Sbjct: 134 MKDSPEDAIERRAVIENIVNNSIGSINPIKDKSGNDNEYRYYKLSYSASTAVDARDLLQG 193 Query: 151 YIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQA 210 YI V+ VN ++ ++ + L + D + A+ +++I +++ A A+ A Sbjct: 194 YINFVNSTVNADVNLKIQRAVDLAKGMATDKYSLDLLRAKNSHEVKIERLKYASSIADVA 253 Query: 211 QVTKPQIQQTGEDITQDTLF--LLGSEALESMIKHEATRPLVF--SPNYYQTRQNLLDIE 266 + KP + +G I+ D F +G++AL ++ E + + + + + L + Sbjct: 254 GIKKP-VYSSGSQISDDPDFPITMGADALNRKLEIEKSITDLTTVNADLLNRKLYLDKLN 312 Query: 267 SLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 +L++ +D+ ++Y+ +P P +RD+PK+ + ++L L G + G VL + + + Sbjct: 313 ALEIPKVDVVPFKYLQQPTEPTKRDAPKRGLIMVLFALAGLVGSVGFVLVGHFVSERERQ 372 >UniRef50_Q7N0P7 Ferric enterobactin transport protein n=2 Tax=Enterobacteriaceae RepID=Q7N0P7_PHOLL Length = 367 Score = 189 bits (480), Expect = 9e-47, Method: Composition-based stats. Identities = 71/347 (20%), Positives = 145/347 (41%), Gaps = 33/347 (9%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 + ++IDL +L L++ K+ II I+ + ++ +KW+S+A I +P + +I Sbjct: 20 NSKQDDEIDLFELFSVLFQSKLLIITVTILFAVIGFVAASLMPQKWSSSASIVKPQLEEI 79 Query: 71 AGYNNAMNVIYGQAAPKVSD----------------LQETLIGRFSSAFSALAETLDNQE 114 + + + L+E + + +AE+ D+ Sbjct: 80 QPLKDILTKLEVLNLQPSVTSSSLYNNFLNNFNSRVLREEYLVNTEYFKNLVAESGDHSP 139 Query: 115 EREKLTIEP------------SVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 ++ IE ++ +++ TAE A L YI V V+++ Sbjct: 140 LVKRKLIEKIVNDNISSSSKAEKDDENGETKLTFSAGTAEDAYNLLNGYIDYVSSVVHEQ 199 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 ++ +L D + + ++ + +++ AL AN A + KP I G Sbjct: 200 VKSELSDMVKQKLNYSEGLYSVDLNRVNNIQEANVERLKHALSIANSAGIKKP-ISSEGA 258 Query: 223 DITQDTLF--LLGSEALESMIKH--EATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAY 278 I D + LG++AL+ ++ E P + + + ++++LKVD ++ + Sbjct: 259 MIKDDPDYSIALGADALQRKLQITEEIKDPTLIDADLRNRLFYIKELKALKVDKVNFQPF 318 Query: 279 RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 RY+ P P +DSPK+ + LI + LG ++ VL R+ +R+ Sbjct: 319 RYMQAPYEPTAKDSPKRLLILIGSAFLGLILAVVSVLIRHMVRSRQQ 365 >UniRef50_B4F1Q0 O-antigen chain length determinant n=5 Tax=Enterobacteriaceae RepID=B4F1Q0_PROMH Length = 372 Score = 186 bits (472), Expect = 8e-46, Method: Composition-based stats. Identities = 74/347 (21%), Positives = 150/347 (43%), Gaps = 36/347 (10%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP---DVGQI 70 ++IDL +L L++ K II ++ + + +KWTS A IT+P ++ Q+ Sbjct: 25 QNDEIDLFELFSVLYKSKFVIIGITLLFAIVGFTVASFLPQKWTSQAAITKPMLDEMKQL 84 Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRFS------------SAFSALAETLDNQEEREK 118 N ++++ S + + I ++ + L +D+ +K Sbjct: 85 RATLNDLSLVDVDTGVNASSVYQKFINNYNSRVLREEYLVNTDYYKNLLAKMDDPTPLDK 144 Query: 119 LTIEPSVKNQQLP----------------LTVSYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 + ++ + + + +S+ T+E A L+ YI+ + KV E Sbjct: 145 RKLIETIVTKDINLKASDSKNSDEEFSGEINLSFTAPTSEEAYDLLSGYIRFISTKVRVE 204 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 ++ ++ D I + Q + + +++ +++++ AL+ AN A V KP I G Sbjct: 205 VKDEIDDQIERKLNHAQKAYQMDLERIANARNVNVQRLKYALEIANAAGVKKP-ISSEGA 263 Query: 223 DITQDTLF--LLGSEALESMIKHEAT--RPLVFSPNYYQTRQNLLDIESLKVDDLDIHAY 278 I D + +G++AL S + P S N+ +E +K+ DL + Sbjct: 264 QIKDDPDYSIAMGADALSSKLAITEAITDPTTVSSELKNRLYNIQQLEQIKLGDLQFVPF 323 Query: 279 RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 +Y++KP P ++D+PK+A+ L+ A +G ++ VL RN Sbjct: 324 KYMLKPYEPTKKDAPKRALILVGAAFVGFILSVMGVLLGYMARNRRK 370 >UniRef50_A4TP85 O-antigen chain length determinant n=33 Tax=Yersinia RepID=A4TP85_YERPP Length = 383 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 76/358 (21%), Positives = 150/358 (41%), Gaps = 36/358 (10%) Query: 4 ENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT 63 N + S + +IDL ++ +++ K II+ + + + + +KWTSTAII Sbjct: 16 NNYDFSNVSSSRNEIDLFEIFSVVFKSKFKIILITLFFLISGLVVSYILPQKWTSTAIIA 75 Query: 64 QPDVGQIAGYNNAMN---VIYGQAAPKVSDLQETLIGRFSSA-----------------F 103 P Q+ + + V+ + + L T F S Sbjct: 76 LPGDEQVQVLDELITNLTVLDIKVDVSANYLLSTFKQNFDSQDLREQYLVNTNYFKRLMK 135 Query: 104 SALAETLDNQEEREK-----------LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYI 152 + + LD + E+ L + +N+ +SY T A+ L I Sbjct: 136 NNPEDGLDKRALIERIVNENISSVNPLKDKTEGENEYRYYKLSYSASTPTDARDLLQGSI 195 Query: 153 QQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQV 212 V+ VN ++ + ++ + L + D + + A+ + ++I +++ A A+ A V Sbjct: 196 NYVNTIVNADVFRKIQRAVDLAKGIGTDKYSMELLKARNNQKVKIERLRYASSIADAAGV 255 Query: 213 TKPQIQQTGEDITQDTLF--LLGSEALESMIKHEAT--RPLVFSPNYYQTRQNLLDIESL 268 KP + G I+ D F +GS+AL ++ E + + + L + L Sbjct: 256 KKP-VYSNGSAISDDPDFPITMGSDALNRKLEIEKSVIDLASINTELLNRKLYLDKLNRL 314 Query: 269 KVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 ++ +++I ++Y+ +P P +RD PK+A+ +IL L+G M G VL + +R + Sbjct: 315 EIPNVNIVPFKYLQQPTEPTKRDVPKRALIVILFALVGLMGSVGFVLVEHFVRERKRE 372 >UniRef50_P26266 Ferric enterobactin transport protein fepE n=158 Tax=cellular organisms RepID=FEPE_ECOLI Length = 377 Score = 183 bits (465), Expect = 5e-45, Method: Composition-based stats. Identities = 76/349 (21%), Positives = 147/349 (42%), Gaps = 36/349 (10%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 + +IDL++L+ LWR K T++ V + + +KWTS A++T P+ Q Sbjct: 21 SPSNNEIDLLNLISVLWRAKKTVMAVVFAFACAGLLISFILPQKWTSAAVVTPPEPVQWQ 80 Query: 72 GYNNAMN---VIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLT-------- 120 + V+ ++ I +F S + ++L Sbjct: 81 ELEKSFTKLRVLDLDIKIDRTEAFNLFIKKFQSVSLLEEYLRSSPYVMDQLKEAKIDELD 140 Query: 121 --------------------IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVN 160 + + T+S+ T+E AQ L+ YI + V Sbjct: 141 LHRAIVALSEKMKAVDDNASKKKDEPSLYTSWTLSFTAPTSEEAQTVLSGYIDYISTLVV 200 Query: 161 QELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQT 220 +E +++++ + + + ++ L + + Q D I+++ +L AN A + KP + Sbjct: 201 KESLENVRNKLEIKTQFEKEKLAQDRIKTKNQLDANIQRLNYSLDIANAAGIKKP-VYSN 259 Query: 221 GEDITQDTLFL--LGSEALESMIKHEATRPLVFSPN--YYQTRQNLLDIESLKVDDLDIH 276 G+ + D F LG++ +E ++ E V N + + + V+D++ Sbjct: 260 GQAVKDDPDFSISLGADGIERKLEIEKAVTDVAELNGELRNRQYLVEQLTKAHVNDVNFT 319 Query: 277 AYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 ++Y + P LP+++D P KAI +IL+ L+GGMV G VL R A+ + Sbjct: 320 PFKYQLSPSLPVKKDGPGKAIIVILSALIGGMVACGGVLLRYAMASRKQ 368 >UniRef50_Q65UU8 Putative uncharacterized protein n=1 Tax=Mannheimia succiniciproducens MBEL55E RepID=Q65UU8_MANSM Length = 396 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 74/374 (19%), Positives = 147/374 (39%), Gaps = 53/374 (14%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + N ++ ++IDLIDL+ LW+ K+ +I++ +A Y AKE+WTS A Sbjct: 23 MNNTASMSPQNNNDEIDLIDLIKVLWQKKLVVILTSFFFALIAAIYAFTAKEQWTSKATT 82 Query: 63 TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAF------------------- 103 P V + Y + + K ++ + F++ Sbjct: 83 IAPKVADMGYYLSLRSEYANILNIKEFTSKDVVDNLFNNFRVALFSNNMKREFFAQSKWF 142 Query: 104 -SALAETLDNQEEREKLTI------------EPSVKNQQLPLTVSYVGQTAEGAQMKLAQ 150 + E +++ ++KL + L + +S+ +T + AQ L + Sbjct: 143 QNYANENAKDEDAKQKLLSDILDKSLIVTIPDIKKNPNALGINISFAAETPKEAQEVLTE 202 Query: 151 YIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQA 210 YI ++ V E + D +I + NL+ + + + +++ + AL A A Sbjct: 203 YINFINATVLTEDKIDFLADIKIAIDNLELQKDKIQRDTESVRQVQLENLTTALDIAKSA 262 Query: 211 QVTKPQIQQTGEDITQ------------------DTLFLLGSEALESMIKHEATRPLVFS 252 + + I Q LF+LG + L++ + +V+ Sbjct: 263 GIKEYSKTSGNVSIPQFALGDAQIPFTDSKLSDGSYLFMLGEKYLQAQVDTLTNNKVVYP 322 Query: 253 PNYYQTRQNLLDIESLKVD---DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMV 309 ++Y + + + SL+ D + +Y Y+ P P RD PK+ + L++ +LGG++ Sbjct: 323 VSFYTIEKQVSLLNSLEQKANTDSKVTSYYYLTSPDYPTTRDWPKRVLLLLIGAVLGGVL 382 Query: 310 GAGIVLGRNALRNY 323 G VLG+ Sbjct: 383 GCLWVLGKQIFSQK 396 >UniRef50_Q31F07 Lipopolysaccharide biosynthesis protein Wzz n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31F07_THICR Length = 364 Score = 182 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 64/353 (18%), Positives = 135/353 (38%), Gaps = 34/353 (9%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 + + ++IDL +L L + K+T+ +S ++ I L Y + S A + P Sbjct: 8 PHFEEKASMDDEIDLFELWNGLVQEKLTVFLSFLMIIGLGTIYAFSVTPVYKSDAYLLPP 67 Query: 66 DVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGR---------FSSAFSALAETLDNQEER 116 +I N + A V+D+ T F + +A + + + Sbjct: 68 KASEIQDINRLNATLGIGDAYSVNDVFNTYTENLLSRARLLTFFKQHNLIAFYEPDFKNK 127 Query: 117 EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMK-----------------LAQYIQQVDDKV 159 EK E + + + + L QYIQ++ + Sbjct: 128 EKEVREKEFNDSFSTFVEEFGITHPKDGAKRVMVEMTLPVDADQVKEFLTQYIQKIRIET 187 Query: 160 NQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQ 219 +++ D+ + L + + + AQ+ ++ +I ++ E+++ A Q ++ +P Sbjct: 188 RKQITTDIFTRKQFLMQQLINQINAVKETAQKHREDKIARLDESIKVARQLKIKEPLSAG 247 Query: 220 TGEDI-----TQDTLFLLGSEALESMIKHEATR--PLVFSPNYYQTRQNLLDIESLKVDD 272 +I L+ LG + LE+ R F+ + + ++S++++ Sbjct: 248 PAMNIQGVQNQGLPLYYLGYQVLEAEKDVLKKRKTDDAFTGKLRELEERYNLLDSVEING 307 Query: 273 LDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 P + + PKKA+ L ++ +LG M+G I L R A++N A Sbjct: 308 DLFKVVNVDQPPEI-GEKVKPKKALILAVSGVLGLMLGIFIALIRRAIKNRKA 359 >UniRef50_C4SZ47 Chain length determinant protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4SZ47_YERIN Length = 372 Score = 178 bits (451), Expect = 2e-43, Method: Composition-based stats. Identities = 70/344 (20%), Positives = 142/344 (41%), Gaps = 36/344 (10%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 ++IDLI++ L+R K II+ V+V + + +KWTS+++I P + +N Sbjct: 25 DEIDLIEIFSMLFRAKKIIILIVVVFALIGLIVGFFLPQKWTSSSVIIAPTYSESMLLDN 84 Query: 76 AMNVIYGQAAPKVSDLQETLI-------------------------------GRFSSAFS 104 + + D L F Sbjct: 85 LLGELKVAGVDSGIDENYLLATYMQFCDSRILRDAFLQQTDYLKMLMKKNPNDEFKKQSL 144 Query: 105 ALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELE 164 + +N + + + + QT + A+ L Y+ V + N + Sbjct: 145 LDVISTNNITTESNANDKSASTKDNNYFRLKFSAQTPDSAKDLLQGYMNYVKESANAYIL 204 Query: 165 KDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDI 224 L+ ++AL + Q + Q ++D+RI++++ AL A A + KP + +G I Sbjct: 205 FKLQRSLALKLEAEQRLFSLESQRVQSRRDVRIKRLEYALSIAEAAGLKKP-VYSSGAAI 263 Query: 225 TQDTLFL--LGSEALESMIKHEAT--RPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRY 280 D + LG +AL+ ++ E + PL S + N+ + ++K+D+++ ++Y Sbjct: 264 LDDPDYSITLGGDALKQKLRVEKSITDPLTTSADLRNRAINIDLLRNIKIDNIEFTPFKY 323 Query: 281 VMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 + KP +P ++D PK+ + L++ +G +V L R+ L + Sbjct: 324 LQKPEVPTKKDGPKRLLILVIFTFIGLIVAIATALLRDGLVRHR 367 >UniRef50_P0AG01 Lipopolysaccharide biosynthesis protein wzzE n=174 Tax=Enterobacteriaceae RepID=WZZE_ECO57 Length = 348 Score = 177 bits (448), Expect = 5e-43, Method: Composition-based stats. Identities = 77/344 (22%), Positives = 145/344 (42%), Gaps = 28/344 (8%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + ++D+ L LW GK+ II + +A+ Y A+++W+STAI Sbjct: 2 TQPMPGKPAEDAENELDIRGLFRTLWAGKLWIIGMGLAFALIALAYTFFARQEWSSTAIT 61 Query: 63 TQPDVGQIAGYNNA------MNVIYGQAAPKVSDLQETLIGRFSSAFSALA----ETLDN 112 +P V + GY + ++V A+ + + F ++ L Sbjct: 62 DRPTVNMLGGYYSQQQFLRNLDVRSNMASADQPSVMDEAYKEFVMQLASWDTRREFWLQT 121 Query: 113 QEEREK------------------LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQ 154 +++ + P + + +V + +TA A L QY+ Sbjct: 122 DYYKQRMVGNSKADAALLDEMINNIQFIPGDFTRAVNDSVKLIAETAPDANNLLRQYVAF 181 Query: 155 VDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTK 214 + L +LK A ++ ++ QE VA+ D R+ I++AL+ A Q +++ Sbjct: 182 ASQRAASHLNDELKGAWAARTIQMKAQVKRQEEVAKAIYDRRMNSIEQALKIAEQHNISR 241 Query: 215 PQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLD 274 E++ +FLLG L++ +++ F +Y Q R L + D Sbjct: 242 SATDVPAEELPDSEMFLLGRPMLQARLENLQAVGPAFDLDYDQNRAMLNTLNVGPTLDPR 301 Query: 275 IHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 YRY+ P P++RDSP++A +I+ ++GG++GAG+ L R Sbjct: 302 FQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGGLIGAGVALTRR 345 >UniRef50_Q8KNM2 O-antigen chain length determinant n=3 Tax=Aeromonas hydrophila RepID=Q8KNM2_AERHY Length = 362 Score = 176 bits (446), Expect = 8e-43, Method: Composition-based stats. Identities = 78/361 (21%), Positives = 138/361 (38%), Gaps = 42/361 (11%) Query: 1 MRVENNNVSG---------QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAV 51 M + + Q +IDL +L LWR K+ I++ +V IGY + Sbjct: 1 MNMNKQQIDNLDNKLPQGWQATSGNEIDLYELFSVLWRQKIQILMITVVFAIAGIGYALL 60 Query: 52 AKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPK---VSDLQETLIGRFSSAFSALAE 108 A + W S + I P + ++ +N + P S + L G F S F++ Sbjct: 61 APQVWVSQSQIKPPSLQEVESLELRVNQLINAQIPATIFDSFNKAALYGDFVSNFNSFNN 120 Query: 109 TLDNQEEREKLTIEPS-------------------------VKNQQLPLTVSYVGQTAEG 143 E+ L ++ + +T+S+ TA Sbjct: 121 KRQFLIEKGYLDMDAEAAGITDDKGKRALLRKMVNGISAVALDAPSDNITLSFGAATATE 180 Query: 144 AQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEA 203 AQ +L QYI + + K+L+ K L + + Q + + + + Sbjct: 181 AQQRLEQYIAFIQQQEIVSKSKELETIWQNRIKILLSQYDSIKADTLTQLKDDVSRTEYS 240 Query: 204 LQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFS--PNYYQTRQN 261 L+ + A + P + G++AL +K + P R Sbjct: 241 LRISRAAGIETPVENLN---VRDGFNIEWGAKALAEKLKVLKELKNLELLNPALSDLRLQ 297 Query: 262 LLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 L + ++K++ ++ Y+ P P+ RD PK+ + ++LA LLGGM+G GIVL R+A R Sbjct: 298 LSSLRAIKLEQQSFQSFSYLASPSEPLSRDKPKRPLVVVLATLLGGMLGIGIVLARHAFR 357 Query: 322 N 322 Sbjct: 358 R 358 >UniRef50_C4L7N8 Lipopolysaccharide biosynthesis protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L7N8_TOLAT Length = 372 Score = 174 bits (440), Expect = 4e-42, Method: Composition-based stats. Identities = 76/346 (21%), Positives = 151/346 (43%), Gaps = 36/346 (10%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAG 72 D ++IDL++L LW+ K I + +A Y A+E WTS A+ P + +I Sbjct: 21 QDNDEIDLVELFRTLWKQKAKIALVTAATTLVAGIYAFTAEEVWTSKAVFDAPKLEEIGS 80 Query: 73 YNNAMNVI--------YGQAAPKVSDLQETLIGRF----------------SSAFSALAE 108 Y + G + + + F S + L Sbjct: 81 YYEFTQQLRRTLQKPTIGAITLIPDQITKEVFTEFQKQTNSIDLRREFWSQSDYYHNLVI 140 Query: 109 TLDNQEEREK---------LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKV 159 + +++++EK +T+ P + + +VS A A+ L QY+ +++ KV Sbjct: 141 NIKSEKDKEKKLDDLIEKNITVVPIDEQKVKFPSVSLSVNDATTAKELLIQYVDKLNAKV 200 Query: 160 NQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTK---PQ 216 + +LK + L++ + E A+ ++ I I++A A +A + + Sbjct: 201 WKSKSTELKTILKEEVAELENEKKLLEFRAETDRNNSIDIIRKAKSVAEKANIKELNLSA 260 Query: 217 IQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIH 276 +Q ++D LF LG++AL++ I + +P+ YY+ + L +++ L +DI Sbjct: 261 MQGNANVSSRDMLFFLGTKALDAQIDNLVNKPVTMPVRYYEVERMLTELKKLPEFKVDIK 320 Query: 277 AYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 +YRY+ P P+ RD PK+ + ++++ L G ++ +L + N Sbjct: 321 SYRYLQAPSEPLTRDGPKRTLIIVVSFLFGMILSCIAILIKKVFLN 366 >UniRef50_Q3YTC2 O antigen chain length determinant protein n=5 Tax=Enterobacteriaceae RepID=Q3YTC2_SHISS Length = 346 Score = 173 bits (438), Expect = 6e-42, Method: Composition-based stats. Identities = 79/345 (22%), Positives = 134/345 (38%), Gaps = 31/345 (8%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 ++IDL +LL LW+ K I+ ++ LA Y AKE+WT+ I P + ++ Sbjct: 1 MPKAEDEIDLFELLGTLWKKKWVILCVTLLTTGLAAVYAFTAKEQWTAKTYIQAPRIAEL 60 Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAE---------------------- 108 Y Y + + D G FS Sbjct: 61 GSYLKFH-QAYARILNQPLDTNALANGLFSDLILIAESPDTKVKFLESTEYYKKETNNLS 119 Query: 109 -------TLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ 161 L Q + + P K + +A+ A L Y++ V+++ Sbjct: 120 TEQDKKIWLAEQANKGLVITPPKEKGNTSYYIIQASADSAQEAYKLLQGYLKNVNNQAVT 179 Query: 162 ELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTG 221 + N+ NL + + + +K +I IQ L A QA + + + G Sbjct: 180 LSLDEFGQNVNTLLVNLNKEIIDIDFQRKSEKLDQIAHIQRDLTTAEQAGIIDYRSSKGG 239 Query: 222 EDITQDT-LFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRY 280 D Q + FLLG + L + +K P+++ YY+ ++ + ++E + D++ AYRY Sbjct: 240 FDNAQSSYKFLLGEKLLSAELKATKDAPIIYPFRYYEVKRQIDELEGMLRDNIQAQAYRY 299 Query: 281 VMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 MKP P+ +D P KA+ LIL L G M L L++ Sbjct: 300 QMKPSEPVIKDKPNKALILILGALPGAMFAIVGTLVYATLKDKTK 344 >UniRef50_D1P4F6 Ferric enterobactin transport protein n=2 Tax=Providencia RepID=D1P4F6_9ENTR Length = 375 Score = 172 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 87/356 (24%), Positives = 156/356 (43%), Gaps = 35/356 (9%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 N Q ++IDL+ L+ L++ K III +V AL+IG + +KWTS AII Q Sbjct: 16 EQNPDFQLQKNDEIDLMALVAVLFKNKYLIIIFTVVITALSIGVVKTLPQKWTSEAIIIQ 75 Query: 65 PDVGQ---IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALA-------------- 107 P + I+ + ++ + + + I ++ S + Sbjct: 76 PTSEETKEISEFAARLSALDFNIDLGSARIYNEFITQYRSKVNQEDYVRSTEYYQSLLAK 135 Query: 108 --ETLDNQEEREKLTI-----------EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQ 154 + D QEE+ + + + +S+ TA AQ L YI+ Sbjct: 136 LGDKNDVQEEQRLVNRIISDSIKLKYNAKEKDSDDSDIILSFTAPTAIEAQDLLNGYIRY 195 Query: 155 VDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTK 214 +V + + ++ + I+ ++L+ Q D++I +++ A+ A A +T+ Sbjct: 196 TASQVRKRFKTEIDNAISRQLIYSVEALKNDTAKIQIAYDVKIERLKRAITIAKAAGITR 255 Query: 215 PQIQQTGEDITQDTLF--LLGSEALESMIKHEATRPLV--FSPNYYQTRQNLLDIESLKV 270 P I + I D + LGSEALE + E + S ++ ++ ++ L Sbjct: 256 P-IARDAVAINDDPDYPIALGSEALEEKLAIELKNRDLALISEKLQNSKMHIDNLNGLTT 314 Query: 271 DDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 +LD R+++ P LPI +DSPK A+ + L +LG ++ VLGR+ RNYN + Sbjct: 315 KELDFQPVRFILTPDLPIAKDSPKSALIVALGAILGLILSCAFVLGRDLYRNYNGQ 370 >UniRef50_B2Q4F4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q4F4_PROST Length = 372 Score = 171 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 72/348 (20%), Positives = 154/348 (44%), Gaps = 33/348 (9%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 + ++IDL+ L L R K+ II+ +V ++I + +KW+STA++ P +I Sbjct: 22 NSQQSDEIDLMALFAVLLRNKLLIIVITVVITLISIFVVFQLPQKWSSTAVVIPPSSEEI 81 Query: 71 AGYNN---AMNVIYGQAAPKVSDLQETLIGRFSSAFSALA---------------ETLDN 112 N ++V+ + + I ++ S + A + D Sbjct: 82 KDINTLSAQLSVLDVKIDLSAQQIFNAFIDQYRSKVNQEAYVRSTNYFKKLSEQVNSTDK 141 Query: 113 QEEREKLTI------------EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVN 160 + E+++L + + +++V T AQ L+ Y++ KV Sbjct: 142 ENEQQRLVNTIISNNIGLKDQSKEKNSTSSDIILTFVAPTPSEAQDLLSGYVRYTATKVR 201 Query: 161 QELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQT 220 ++ +KD+++ IA ++ + + + + D+++ +++ A+ A A V KP + + Sbjct: 202 EQFKKDIQNAIAQQLVYANETFKQEVTKIRSEYDVKVERLKRAIDIAKAAGVRKPIVSDS 261 Query: 221 GEDITQ-DTLFLLGSEALESMIKHEATRPLV--FSPNYYQTRQNLLDIESLKVDDLDIHA 277 D LG+EALE + E + + + + + ++ L +D LD Sbjct: 262 AIISDDPDYPIALGTEALEKKLAIELQNRDIALLNEDLQIRQHYIKNLSELDIDTLDFIP 321 Query: 278 YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 ++++ P LP ++DSPK + ++L+ +LG ++ VL R R+Y+ Sbjct: 322 AKFMLAPDLPTQKDSPKSVLIIMLSAILGFILSCAYVLSRELYRDYHK 369 >UniRef50_B0BR52 Wzz-like protein n=2 Tax=Actinobacillus pleuropneumoniae RepID=B0BR52_ACTPJ Length = 370 Score = 170 bits (429), Expect = 7e-41, Method: Composition-based stats. Identities = 86/359 (23%), Positives = 151/359 (42%), Gaps = 50/359 (13%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 N E+IDLI+L+ LW+ K+ I I + ALA Y AKEKWTS + P V I+ Sbjct: 9 NQTNEEIDLIELVRVLWKKKLLIAIVTCIFTALAAVYAFTAKEKWTSQTEVIAPRVTDIS 68 Query: 72 GYNNAMNVIYGQAAP--KVSDLQETLIGRFSSAFSALAETLDNQEEREKLT--------- 120 Y + K ++++ L FS + E + + + Sbjct: 69 EYLSLRKEYNLIIGSEFKENEIRNELSELFSRYVLSYDEAIAFFKTTDTYKKLAETENEV 128 Query: 121 ----------------IEPSVKNQQLPL--TVSYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 I+P K L ++ TA AQ L +I + D Sbjct: 129 GLQRAVAEFTTESLKVIKPDAKKDPNALGSKIAISFDTALSAQTTLNDFICHISDTSFNF 188 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKP------- 215 + + I +L E Q+ ++I+ ++ AL A +A + + Sbjct: 189 SKNEFIYWIKESISSLNYEKEVIEQDQSIQRKVQIQNLETALDMAKKAGIKEYSSALSSN 248 Query: 216 -----------QIQQTGEDITQDT-LFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLL 263 +I + + T LF+LG + L++ + T+ +V+SP YYQ ++ LL Sbjct: 249 SSVANLAVSDTKIPLSDSKLADGTYLFMLGEKNLQAQLDIAKTKEIVYSPRYYQIQEQLL 308 Query: 264 DIESL--KVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 + +L KV+ + ++ Y+ P LPI+RD PK+ I L++ ++GG++ + V+G+ Sbjct: 309 KLNTLLPKVEKVTGQSFSYISSPELPIKRDWPKRFILLLIGAVIGGVLSSLWVIGKQIF 367 >UniRef50_Q8KN75 Wzz n=1 Tax=Pseudomonas aeruginosa RepID=Q8KN75_PSEAE Length = 344 Score = 169 bits (428), Expect = 9e-41, Method: Composition-based stats. Identities = 61/338 (18%), Positives = 128/338 (37%), Gaps = 23/338 (6%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + QIDL++L + R K I ++A ALA+ Y ++ + + A + Sbjct: 1 MTTERSPRVVPIDGQIDLVELAQGILRQKWLIASFFLLATALAVVYAFYSRPIYEARASV 60 Query: 63 TQPDVGQIAGYNNAMNVIY-------------GQAAPKVSDLQETLIGRFSSAFS-ALAE 108 P + +I+G+N + Q ++ AE Sbjct: 61 LPPSLNEISGFNLGRKESDLGVFSVKDIYDVFIRNLMAEETRQNFFKEKYLPTLGDKGAE 120 Query: 109 TLDNQEEREKLTIEPSV-KNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDL 167 +LD + ++ + +S V ++ A + YI+ V E+ K++ Sbjct: 121 SLDALYNKFNDELQIKASVDGSGRYLISAVAHESDTAAYLVDSYIEMVAGISKNEMLKNI 180 Query: 168 KDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI------QQTG 221 K ++ + NL+ + +A+ +++ I +++EAL+ A ++ P +Q Sbjct: 181 KRDLHVKSVNLEQQINIMRAMAKTRREDTILRLREALKIAEALKIENPPSFEGQTERQLS 240 Query: 222 EDITQDTLFLLGSEALESMIKHEATR--PLVFSPNYYQTRQNLLDIESLKVDDLDIHAYR 279 + + +++ G++AL + I R F ++ L D+ + YR Sbjct: 241 SIMIGELMYMRGAKALRAEISSLEARESDDSFIGGLRALQERYALYTKLSPDESQVSVYR 300 Query: 280 YVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGR 317 + PKK I ++L + G +G + L R Sbjct: 301 KDGVVETSDKPIKPKKLIIIVLGAVFGIFLGCLVGLLR 338 >UniRef50_A7JUL8 O-antigen chain length determining protein n=2 Tax=Pasteurellaceae RepID=A7JUL8_PASHA Length = 375 Score = 168 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 77/367 (20%), Positives = 140/367 (38%), Gaps = 52/367 (14%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 ++V ++IDLI++ LW K I+I+ + LA Y AKE+WTS A + P Sbjct: 3 DSVKSHEQSSDEIDLIEIFRALWDKKWWIVITTFITTLLAGIYAFTAKEQWTSKATVIAP 62 Query: 66 DVGQIAGYNNA---MNVIYGQAAPKVSDLQETLIGRFS----------------SAFSAL 106 + ++ Y N + I + L +L F+ + + L Sbjct: 63 KLTELGEYLNVRREYSRILRVDPVDPNALSASLFNNFNRLAQSQDTKNEFFITSNVYKTL 122 Query: 107 AETLDNQEEREKLTI-----------EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQV 155 AE D Q +R L+ + + T+S+ +T AQ L + +Q + Sbjct: 123 AEGKDEQGQRTVLSNLSNENTSFIIPDAKKDPNAIGRTLSFSAETPMEAQDTLGKLVQFI 182 Query: 156 DDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKP 215 + K +D + LQ + K +++ + +A + A +A + + Sbjct: 183 NSKAFAVELEDFLVDFQNVLTALQYEKSLIQEDLSVNKSVQLENLNKAYETAQKAGIKEY 242 Query: 216 QIQQTGEDITQ--------------------DTLFLLGSEALESMIKHEATRPLVFSPNY 255 D + LF+LG + L++ I + +V+ P Y Sbjct: 243 SKAFNQSDASNIAAALSDTKISLSDSKLADSSYLFMLGEKYLKAQIDVANEKGVVYPPRY 302 Query: 256 YQTRQNLLDIESL--KVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGI 313 YQ L +E L K + + Y P P+ +D PKK I L++ +G M+ Sbjct: 303 YQIDYQLKQLEPLFEKTKTVKTQTFSYQASPDYPVIKDKPKKVIILLIGAFIGLMISCLS 362 Query: 314 VLGRNAL 320 ++ + L Sbjct: 363 IILTHYL 369 >UniRef50_Q2C7A7 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C7A7_9GAMM Length = 351 Score = 167 bits (423), Expect = 4e-40, Method: Composition-based stats. Identities = 85/354 (24%), Positives = 148/354 (41%), Gaps = 36/354 (10%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 +N + N ++IDL +L+ LW+GK+TI + IV AI Y A++ WTS A +T+ Sbjct: 2 SNIQAVNNSSNDEIDLAELVKTLWQGKVTIALCSIVFTVCAIVYALTAQQWWTSDATVTR 61 Query: 65 PDVGQIAGYNNAMNVIYGQAAPKVSD---LQETLIGRFSSAFSALAETLDNQEE------ 115 A + + +Y + L+ F + F+A E+ Sbjct: 62 GQYKDTANIRSQVTNLYSVIDVSKVNNIFESGRLLNEFITEFNAFDNKKAFLEQNSIIEQ 121 Query: 116 --------------------REKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQV 155 ++ K + +S+ +++E A L Y + Sbjct: 122 YAKDDGVNKEDKGKFIAFWAKKIDASLNDEKKRPNVYKLSFEARSSEAAHDLLKAYSSFI 181 Query: 156 DDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKP 215 D+V E + IA ++ L S + E+ A+E++ + + AL A A+V KP Sbjct: 182 TDQVRDEAFSVIASKIAHNKQILLASKESLELKAKEKQKALLLKTNYALDIARSAKVNKP 241 Query: 216 QIQQTGEDITQDTLFLLGSEALESMIKHEATRPLV--FSPNYYQTRQNLLDIESLKVDDL 273 ++T LG+E L+ + + F P+ Q + L + + +D Sbjct: 242 ---LADVNLTGVFPIQLGTEGLKEQSNILKSMKDLSFFEPSLTQIKIKLGLLSKIYLDKD 298 Query: 274 D-IHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 + + RY+ PI RD PK+++ +L LLG M+G IVL ++A N NAK Sbjct: 299 TAMKSVRYLKDIDYPISRDKPKRSLIAVLGFLLGMMLGVAIVLLKSAF-NKNAK 351 >UniRef50_UPI000197BC0B ferric enterobactin transport protein FepE n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197BC0B Length = 379 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 78/357 (21%), Positives = 154/357 (43%), Gaps = 35/357 (9%) Query: 4 ENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT 63 + Q ++IDL+ L L + K I+I +V I +++G + + +KW+STAI+ Sbjct: 22 SPSAHQFQIQQNDEIDLMALFSILLKHKFLILIFTVVCIVVSVGVVKLLPQKWSSTAIVI 81 Query: 64 QPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIG---------------RFSSAFSALAE 108 P ++ N + P Q R + + LAE Sbjct: 82 PPASEELKEVNAFKAQLDVLDIPIDLSAQRIFNSFVDQYRSKVNQESYIRSTDYYHNLAE 141 Query: 109 TLDNQEE---REKLT------------IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQ 153 +D +++ +++L + + + +S+ AQ L YI+ Sbjct: 142 KIDPKDDVIAQQRLVNSIISNDIKIQDLSKEKNSTSNDIVLSFTAPLPTEAQDLLEGYIR 201 Query: 154 QVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVT 213 KV Q+L+ ++ + I+ +SL+ + Q + D+++ +++ A+ A A + Sbjct: 202 YSASKVRQQLKVEIDNMISEKLIYASESLKREVSKIQTEYDVKVERLKRAVDIAKAAGIE 261 Query: 214 KPQIQQTGEDITQDTLF--LLGSEALESMIKHEATRPLV--FSPNYYQTRQNLLDIESLK 269 KP I I D + LG+EALE + E + S N + L +++ + Sbjct: 262 KP-IASDSVAINDDPDYPIALGTEALEKKLLIETQNRDLALMSENLQNRKIYLDNLQEVT 320 Query: 270 VDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 +LD ++++ P LP+ +DSPK ++ + L+ +LG ++ VL R R+Y + Sbjct: 321 AKELDFTPVKFILTPDLPLHKDSPKSSLIVALSAILGLILSCAFVLSRELYRDYKYQ 377 >UniRef50_Q02PW5 O-antigen chain length regulator n=19 Tax=Pseudomonas aeruginosa RepID=Q02PW5_PSEAB Length = 360 Score = 163 bits (413), Expect = 5e-39, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 119/317 (37%), Gaps = 24/317 (7%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + + S Q +ID I+L+ LW K + + LA Y ++K + + + Sbjct: 1 MTDGIDSRQTSKRNEIDFIELIQGLWSQKWLVFSLTFLGAVLAGSYAFLSKPVYEARVAL 60 Query: 63 TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQ--------- 113 P + +AG+N A G VS + S + + Sbjct: 61 LPPSLSDVAGFNIARGRDSGLPPFTVSQVYSVFTRNLQSEGTRRQFFREVYLPSLEERKG 120 Query: 114 -------EEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKD 166 + +++ K+ TV Q E A QY + E+ + Sbjct: 121 SIDGLYRAFSDDVSVNRPSKDLPERYTVILNRQDPEQAAKWAKQYADLAALRSMDEMRGN 180 Query: 167 LKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI------QQT 220 + + + +N+ + T V +E+++ RI +++EALQ A V KP + QQ Sbjct: 181 AQRELEVKSRNILQQIDTLRQVVKERRNDRIVRLKEALQVARAVGVEKPPLIGAQIDQQL 240 Query: 221 GEDITQDTLFLLGSEALESMIKHEATR--PLVFSPNYYQTRQNLLDIESLKVDDLDIHAY 278 + +++ G++ALE+ IK R F P ++ L ES +++ + + Sbjct: 241 SAIMEGSLMYMRGTKALEAEIKALEKRTSDDPFIPALPGLQEQLALYESKQLNFDRVAVF 300 Query: 279 RYVMKPMLPIRRDSPKK 295 R +P PKK Sbjct: 301 RQDGGVEIPDDPIKPKK 317 >UniRef50_A5KZS4 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZS4_9GAMM Length = 358 Score = 163 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 81/361 (22%), Positives = 144/361 (39%), Gaps = 50/361 (13%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 ++IDL +L LW GK+ II+ A +I + +A+E W+S+A IT+ + Sbjct: 1 MYSANDEIDLRELFKALWDGKLIIILITAFFTASSIAFALLAQEWWSSSAKITKAQPQNL 60 Query: 71 AGYNNA-------MNVIYGQAAPKVSDLQETLIG------RFSSAFSA---LAETLDNQE 114 A Y N+ VS ++L+ RF +AF++ LDN Sbjct: 61 AAYQQQVRQFQPVFNIYQEDGTVLVSKELDSLVDSKVLFQRFINAFNSTNNKRSFLDNSA 120 Query: 115 EREKLTIEPSVKNQQ----------------------------LPLTVSYVGQTAEGAQM 146 E ++ +V + P T+++ T E + Sbjct: 121 EFQEFKSSMAVGSSDMSVDEARAFRAEWFNRISAFTADNKGPNSPYTINFQTMTKESSFE 180 Query: 147 KLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQY 206 LA YI + V+++ +L+ + R L R E A Q + + + A Q Sbjct: 181 LLAAYILATELNVHEDAFNNLQAIVNGKRNELVQQKRILESQASNQLLVETARAKYAAQI 240 Query: 207 ANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEA--TRPLVFSPNYYQTRQNLLD 264 A A V +P +++ LG++ L++ +K V P + L Sbjct: 241 AKSAGVDRPIQTGNEKELFS---IDLGAKGLDAKVKALESVKNLSVIEPRLQEINAKLTM 297 Query: 265 IESLKVD-DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 + +L +D ++ +R++ PI RD PK+ + ++ +G + GAG VL R A R Sbjct: 298 LNNLDIDRTVEFQTFRFLENVEQPITRDKPKRVLIVLFGSFIGMLFGAGFVLIRFAFRKE 357 Query: 324 N 324 + Sbjct: 358 D 358 >UniRef50_C5S1B1 Wzz-like protein n=2 Tax=Pasteurellaceae RepID=C5S1B1_9PAST Length = 378 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 79/371 (21%), Positives = 152/371 (40%), Gaps = 52/371 (14%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 ++ S N ++IDLI+L+ LW K+ IIIS ++ A+A Y AKE+WTS A + P Sbjct: 2 SSQSKMNSANDEIDLIELVKTLWDKKIWIIISTVICTAIAGIYAFTAKEQWTSKAEVIAP 61 Query: 66 DVGQIAGYNNAM-------------NVIYGQAAPKVSDLQETLIGR--FSSAFSALAETL 110 V + Y N + K + L E+L R F + + Sbjct: 62 KVTDLGSYFNVRKEYARILGQEFDAGALANGLFAKFNLLSESLDERNEFFVQSDVYKKLI 121 Query: 111 DNQEEREKLTI--------------EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVD 156 + ++E+ + +I +P + + +S++ +T E AQ+ L ++I Sbjct: 122 EGKDEKSQRSILSNLTRENIAITKPDPKKEPDLIGRRISFLAETPEDAQLTLEKFIAFTS 181 Query: 157 DKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKP- 215 Q ++ N+ +L E Q+ +++ + AL A +A + Sbjct: 182 QSAYQLELENFLINLNEVLSDLTYEKTKFERDLSIQRSVQLENLHNALNIAKEAGIKDYA 241 Query: 216 -------------------QIQQTGEDITQDT-LFLLGSEALESMIKHEATRPLVFSPNY 255 +I + ++ T LF+LG + L++ I + +++ P Y Sbjct: 242 KAFGATNDTALQAIAMSETKIPLSDSKLSDGTYLFMLGEKYLQAQIDVLTQKGVIYPPRY 301 Query: 256 YQT--RQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGI 313 YQ L+ +KV + +A+ Y P P+ +D PK+ L+ + GG++ A + Sbjct: 302 YQVSELLKELEPLLVKVKEAKANAFSYQASPDYPVVKDKPKRLFILLGGAVAGGLLSALV 361 Query: 314 VLGRNALRNYN 324 ++ + Sbjct: 362 LIMNYLFKQNR 372 >UniRef50_C9XZM2 Ferric enterobactin transport protein fepE n=2 Tax=Cronobacter RepID=C9XZM2_CROTZ Length = 377 Score = 162 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 77/347 (22%), Positives = 150/347 (43%), Gaps = 35/347 (10%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 +H ++DL L+ L++ + I+ + I + + + +KWTS A+++ P+ Q+ Sbjct: 21 DHPRAELDLFALVAVLFKARKMILSITALFIVMGLALAFLLPQKWTSEAVVSIPETRQLI 80 Query: 72 GYNNAM---NVIYGQAAPKVSDLQETLIGRFSS----------AFSALAETLDNQEEREK 118 + V+ AA + L+ + +F S + A+ + Q + E Sbjct: 81 ELQRVLVDLQVLDVDAAIDAASLENMFLKKFDSRALQEKFLRTSPWVQAQVKEAQSDTES 140 Query: 119 LTIEPSVKNQ-----------------QLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ 161 L ++ Q T+S+ A+ AQ L +YI V + Sbjct: 141 LERAVTLVAQRIKMTSNDNPKAPTASPYSSWTLSFTAPKAQDAQRVLKEYINYAALAVQR 200 Query: 162 ELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTG 221 ++ ++L+ I L K+ + L + + I+++ +LQ AN A + KP + G Sbjct: 201 QVLENLRTTIELKVKSEESRLMIDRNTLANEHKIAIQRLNYSLQVANAAGIKKP-VYSNG 259 Query: 222 EDITQDTLF--LLGSEALESMIKHEATRPLVFSPN--YYQTRQNLLDIESLKVDDLDIHA 277 + + D + LG++ L + E + V + N L +++ L + D+D Sbjct: 260 QAVKDDPDYSIALGADGLAQKLAIERSITDVTALNAAIQNREYRLAELKKLNLADVDFQP 319 Query: 278 YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 + Y M P LP++ D P KA+ LILA L+G ++ +VL R+ + Sbjct: 320 FHYQMAPSLPVKSDGPGKALVLILATLMGFIIACALVLVRDVIAQRQ 366 >UniRef50_Q9JRS3 Wzz homolog n=1 Tax=Aggregatibacter actinomycetemcomitans RepID=Q9JRS3_AGGAC Length = 369 Score = 162 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 81/365 (22%), Positives = 150/365 (41%), Gaps = 57/365 (15%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 + ++IDL++L+ LW ++ II+ + +A Y+ AKE+WTS A I P + ++ Y Sbjct: 7 ENDEIDLVELIKVLWNKRLWIILFSLFFTTIAGIYVFTAKEQWTSKAEIIAPRITELGDY 66 Query: 74 NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDN-----------------QEER 116 Y + D T F F+ L+E+LD + ER Sbjct: 67 FLVKKE-YARILGSEFDASMTANNLFG-QFNLLSESLDERKKFFEKSDFYKKESEGKSER 124 Query: 117 EKLTIEPSVKNQQLPLT--------------VSYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 EKL I + + + + +S+ +T AQ L+++I V+ Q Sbjct: 125 EKLQILFDLMTKNIAIKKPDTKKYPDLIGNQISFYAETPIEAQNVLSKFISTVNISAYQI 184 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKP------- 215 + +L E + K ++++ ++ AL A +A + + Sbjct: 185 ELDKFLTDFNEIIADLNYEKIKFERDLRIHKSVQLKNLESALNIAKEAGIKEYSKSFSIA 244 Query: 216 --------------QIQQTGEDITQDT-LFLLGSEALESMIKHEATRPLVFSPNYYQTRQ 260 ++ + ++ T LF+LG L++ I +++ P YYQ Sbjct: 245 DPQLVLQAIAVSEAKVPLSDSKLSDSTYLFMLGETYLKAQIDVLKNNNIIYPPRYYQVSS 304 Query: 261 NLLDIESL--KVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 L ++E L K + +A+ Y P P+ RD PKK + L + +LG ++G+ +L R Sbjct: 305 QLSELEPLLIKAKQVKANAFSYQASPDYPVVRDKPKKLLILSIGFILGLILGSIYILFRK 364 Query: 319 ALRNY 323 + N Sbjct: 365 LVSNK 369 >UniRef50_UPI000197C816 regulator of length of O-antigen component of lipopolysaccharide chains n=2 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C816 Length = 332 Score = 161 bits (407), Expect = 3e-38, Method: Composition-based stats. Identities = 81/296 (27%), Positives = 152/296 (51%), Gaps = 2/296 (0%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 + + + ++IDL L QLW K TIII +IV I + YL AK KWTS A+I+ P++G Sbjct: 4 NKKERNQDEIDLFHLANQLWVNKKTIIIFIIVFIFMGCVYLVFAKPKWTSQALISLPEIG 63 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQ 128 Q++ Y A++ + +A + +L + + F A + D +++ + S Sbjct: 64 QLSNYPTAVS-LSLNSADNMGTYDMSLPTKVFNLFLANVDA-DIVKDKSNTPLSISKPKD 121 Query: 129 QLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVV 188 +S A+ AQ++L +++ ++ K L + + ++ + L ++ E Sbjct: 122 ANYYILSLSASNAKLAQLELTEWLNFLNKKTQSRLYQAIWQSLEQRKSQLLQQIKAFETS 181 Query: 189 AQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRP 248 A+++K R+ ++ AL+ A Q+ +I+Q I D LF++G+ AL ++I+ E P Sbjct: 182 AKDKKQQRLTLLESALKIAQDTQLNVNEIKQLPNIIPDDALFMMGAPALNALIQQEKEWP 241 Query: 249 LVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVL 304 L F P Y+ T+ L I S ++ + A + P L + R+SPK + L+L+++ Sbjct: 242 LTFDPRYFDTQVQLSLISSFQLKEQGFDAINIISPPSLALHRESPKVTLILVLSIM 297 >UniRef50_Q2BJF5 O-antigen chain length regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJF5_9GAMM Length = 353 Score = 160 bits (405), Expect = 4e-38, Method: Composition-based stats. Identities = 63/351 (17%), Positives = 136/351 (38%), Gaps = 31/351 (8%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 S ++ + IDL L +QLWR K+ I+ + Y ++ + S+A++ Sbjct: 2 EQKHSPEHPLNDHIDLFFLFLQLWRSKLLILGITALITLCGAAYSFLSTPIYQSSAVLAS 61 Query: 65 PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIG------------RFSSAFSALAETLDN 112 P + ++ + + + + R+ ++F + E LD+ Sbjct: 62 PSESDLIEIRKIHTLLQQIIYSETASEEASTTDIFGQFISALNSNRYKNSFLSKPELLDH 121 Query: 113 ------------QEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVN 160 +E L + + +T+S ++ E + L +YI + + Sbjct: 122 FRNDNTTQLQARKEFNRALKVTLPDTEEINHITISLRTKSPELSSSWLNEYISFAHQQFS 181 Query: 161 QELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQT 220 +EL +L+ I + NL ++++++ I+ I+EAL AN+ + P +T Sbjct: 182 KELTNNLQARIHAAQNNLLLTIQSKKANYHSNLIEEIKSIEEALIIANEIGLVNPLKTET 241 Query: 221 GEDITQDTL-----FLLGSEALESMIKHEATRPLVFS--PNYYQTRQNLLDIESLKVDDL 273 + LGS++L + + R P + L + ++ +D Sbjct: 242 NFGKQHIIDQMRGIYRLGSKSLNAELNALKAREKNLDNIPGLSDEKLKLELLANIDLDSK 301 Query: 274 DIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 I A + + P+K I ++L+++ G ++G VL N +R+ Sbjct: 302 LISAMILDLAAEPAPKPIEPRKTIIILLSIVAGLLIGIMTVLAGNLVRHRR 352 >UniRef50_D0GV84 Chain length determinant n=2 Tax=Vibrio RepID=D0GV84_VIBMI Length = 379 Score = 160 bits (405), Expect = 5e-38, Method: Composition-based stats. Identities = 92/366 (25%), Positives = 148/366 (40%), Gaps = 48/366 (13%) Query: 2 RVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAI 61 + N IDL +L LW+GK TII S+ + AI Y A+E W+S A Sbjct: 9 PIHPNQYPSYYSGDNGIDLRELFSALWKGKWTIITSMFIFTFAAITYSLTAQEWWSSKAT 68 Query: 62 ITQPDVGQIAGYN-------------NAMNVIYGQAAPKVSDLQETLIGRFSSAFSAL-- 106 +TQP + IAGY I A E + RF F+A Sbjct: 69 VTQPLLQDIAGYQKVVQRSQPLFDLHQQDGTIIVSEALDSLIDPEVIFKRFLQEFNANGT 128 Query: 107 -----------------------AETLDNQEER--EKLTIEPSVKNQQLPLTVSYVGQTA 141 E+L + E+ E++ P K ++ T+S+ Sbjct: 129 KRRFMQTNATFLALKKELLNQDNPESLQDFYEQWFERIKGVPVGKKEENIFTLSFQSVDK 188 Query: 142 EGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQ 201 + + L+QY+Q V+ +NQ+L DL + + ++ AQ + + + + Q Sbjct: 189 DSSLTLLSQYVQFVNQTINQQLNNDLFNTLVAKYGEIEQQENYLRQQAQLRLQVELERTQ 248 Query: 202 EALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEA--TRPLVFSPNYYQTR 259 AL A A +T+P ++I +GS AL++ + VF P + Sbjct: 249 YALAIAEAAAITQPLQNLGEQEIFA---INIGSRALKAKVDALKSIKNLSVFDPQLAILQ 305 Query: 260 QNLLD--IESLKVD-DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLG 316 L + L D I+ + Y+ +P + +D+PK+A+ +L L GGM+G IVLG Sbjct: 306 SKLSQFDLNELSTDIKWSINGFYYLDQPEQALTQDNPKRALITVLGFLFGGMIGVVIVLG 365 Query: 317 RNALRN 322 R R Sbjct: 366 RFIFRK 371 >UniRef50_C9P0B3 Lipopolysaccharide biosynthesis n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9P0B3_9VIBR Length = 320 Score = 160 bits (404), Expect = 7e-38, Method: Composition-based stats. Identities = 59/325 (18%), Positives = 123/325 (37%), Gaps = 23/325 (7%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 V + ++IDL + + LW GK +I++ ++ + + + ++A + Sbjct: 12 TQVQDLSIVNDEIDLRGVFLALWSGKWVVIVTAVLFTIGGVWFALSQPNTYRASATLVSA 71 Query: 66 DVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV 125 + + G + G A+ ++ S + E K Sbjct: 72 NDEKSGGLAAMASQFGGLASLAGINVGGGRTDDKSVSL--------ATLESRKFINAFID 123 Query: 126 KNQQLPLTVSYVGQTAEGAQMKLA----QYIQQVDDKVNQELEKDLKDNIALGRKNLQDS 181 K LP+ ++ E ++ L I+ ++D ++ EK L+ K + Sbjct: 124 KYALLPILMATEYWDKENNKLVLNPEFYDGIRWLNDP--EDPEKSLEPTAWQAYKKFKGV 181 Query: 182 LRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLF--LLGSEALES 239 L E + I + + A Q T+ +++ + +++L E LE Sbjct: 182 LNVSEATDTGIVSVSITHL--SPYVAQQ--WTQWLVKELNLWMKEESLTETNRNIEYLEQ 237 Query: 240 MIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITL 299 + + + Y + + + + D +A++ + P++P + PK+A+ Sbjct: 238 QLDR-TKVVDMQNVFYQLIEEQTKTL--MLAEVKDEYAFKVIDPPVVPEEKVGPKRALIC 294 Query: 300 ILAVLLGGMVGAGIVLGRNALRNYN 324 ILA L GG++G IVL R A R N Sbjct: 295 ILATLFGGILGVAIVLIRYAFRREN 319 >UniRef50_Q1QWX5 Lipopolysaccharide biosynthesis n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QWX5_CHRSD Length = 365 Score = 157 bits (397), Expect = 4e-37, Method: Composition-based stats. Identities = 67/345 (19%), Positives = 114/345 (33%), Gaps = 40/345 (11%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAG 72 HD ++IDL LL L G I+ V+ A+ LA YLA+ ++ ++ T AG Sbjct: 8 HDDDEIDLSQLLNHLIDGWYWIVGCVVAALVLAGAYLAMTTPQYETSFRATPAASSNFAG 67 Query: 73 YNNAMNVIYG-QAAPKVSDLQETLIGRFSSAFSALAETLDNQE---------EREKLTIE 122 N Q A + + F + E E R +T Sbjct: 68 MNLLSGFSVSPQDAYTTLGNRLSSFQNFQEYVRSHREAFVIPEGASLGSLFTNRLDITGL 127 Query: 123 PSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSL 182 S N L+++Y E L Y+ ++V EL+ L L Sbjct: 128 TSEVNGASELSLTYRYPEGESGHRILNGYVNATAEQVWSELKNRFARANQAKIAALNTRL 187 Query: 183 RTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDIT-------------QDTL 229 + E +++ R+ + A+ A + P Q + L Sbjct: 188 QVGEDKLLAEREHRLFALDNAISTARALGIEAPTTPQEFGQLNPNKEVIYTSLSGDGLPL 247 Query: 230 FLLGSEALESMIKHEATRPLVFSPN--YYQTRQNLLD---------------IESLKVDD 272 + +G + LE+ + + N R+ L +E + Sbjct: 248 YFMGYKTLEAERETLKGKLHDGLSNGTLRNIREELEQRHQIADMLKNDSFYPLEEGVSEH 307 Query: 273 LDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGR 317 D + + P+ A+ L LAV+LGGM+G +V + Sbjct: 308 PDERVVSVIERAYPQDAPVKPRSALVLALAVILGGMLGVFLVFMK 352 >UniRef50_B7VHQ6 Chain length determinant protein n=1 Tax=Vibrio splendidus LGP32 RepID=B7VHQ6_VIBSL Length = 374 Score = 156 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 90/374 (24%), Positives = 153/374 (40%), Gaps = 54/374 (14%) Query: 2 RVENNNVSGQNHD----PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWT 57 + + + QN ++IDL + LW GK+ II+ + + AIG+ +A+E W+ Sbjct: 4 PTQPQSYTPQNPPMYIPNDEIDLREFFKALWDGKLIIILVTALFTSSAIGFALLAQEWWS 63 Query: 58 STAIITQPDV-------GQIAGYNNAMNVIYGQAAPKVSDLQETLIG------RFSSAFS 104 S A IT ++ Q+ + ++ + + S+ + L+ RF F+ Sbjct: 64 SEAEITNNELQDRVMYEQQVKKFQPVFSIYQSDGSARSSEELDFLVDSQIIFQRFVDLFN 123 Query: 105 A---LAETLDNQEEREKLTIEP----------------------------SVKNQQLPLT 133 + LD E +++ + K+ P Sbjct: 124 SSNNKKAFLDESSEFQEIKDDSFSSASEVTEDTTRKLYTEWFERISASLRDKKDTSSPYI 183 Query: 134 VSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQK 193 +++ T E + L+ YI + +V + L+ + R L E A+ + Sbjct: 184 LTFQATTKESSFDLLSSYISFTELQVRNDAFDHLEALVFGERNELFQQKMVLESKARNRL 243 Query: 194 DLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEA--TRPLVF 251 + I + Q AL+ A A V P + D LGS+AL+ IK V Sbjct: 244 LVEIERAQSALKIAKAAGVETPLLSGNARDF---YAIELGSKALQEKIKILKSVKNLAVL 300 Query: 252 SPNYYQTRQNLLDIESLKVD-DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVG 310 P Q L ++S+K+D +D HA+RY+ P RD PK+A+ ++L LLGGM+G Sbjct: 301 EPRLQQITAQLDMLDSIKIDRTVDFHAFRYLSDVEQPTTRDKPKRALIVVLGTLLGGMLG 360 Query: 311 AGIVLGRNALRNYN 324 IVL R A R + Sbjct: 361 VAIVLIRFAFRKED 374 >UniRef50_Q8KNB4 Wzz n=2 Tax=Pseudomonas aeruginosa RepID=Q8KNB4_PSEAE Length = 345 Score = 155 bits (392), Expect = 1e-36, Method: Composition-based stats. Identities = 65/339 (19%), Positives = 138/339 (40%), Gaps = 26/339 (7%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAG 72 ++DL+ L+ +LW K+ I+++ ++A+ + Y ++K + + P +G I G Sbjct: 2 TADGEVDLVKLVKELWVNKVLILLTTLLALIGSFTYAYLSKPVYEYRVAVVPPALGSIEG 61 Query: 73 YN-------------NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREK- 118 +N ++ I+ + + +E + AE+ D QEE K Sbjct: 62 FNIGRRENGLDAYTVRSIYAIFSRNLLSDENKKEFFYKIYLPQVGEGAESEDEQEEFYKK 121 Query: 119 ----LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALG 174 + I+P+ K TV G E +++ D+ E+ + + Sbjct: 122 FSKEVKIDPANKPDADRYTVIVEGTKREVLATWAQAFVRLAADRAVHEVIDSAGRDFQVR 181 Query: 175 RKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI------QQTGEDITQDT 228 +Q + + +A+ ++D RI +++EAL A ++ P + QQ + D Sbjct: 182 NAAMQSRITVLQNMAKGRRDDRIARLKEALLIAESLKIDGPPLIEGASEQQLSSIMDGDL 241 Query: 229 LFLLGSEALESMIKHEATR--PLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPML 286 +++ G++AL + I + +R F P ++ L SL VD + Y+ Sbjct: 242 MYMRGAKALRAEINNLESRSVDAPFIPELRTLQEKLSWNSSLSVDSDAVAVYKEDEGLSF 301 Query: 287 PIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 + PKK + + + L G ++G + + + + Sbjct: 302 SNQPIKPKKILIVTIGTLAGLIIGILLAVLAGFISKLRS 340 >UniRef50_C5BCN1 Ferric enterobactin transport protein FepE n=2 Tax=Edwardsiella RepID=C5BCN1_EDWI9 Length = 357 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 69/343 (20%), Positives = 144/343 (41%), Gaps = 35/343 (10%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 ++IDL+ LL+ L++ K I+ +V+V + +KWTS A + ++A Sbjct: 9 PLQQDEIDLLSLLLVLFKAKWVILGAVLVCALAGFAVKTLLPQKWTSYAELIPAQARELA 68 Query: 72 GYNNAMNVIYGQAAPKVSDLQETLIGRFS----------------SAFSALAETLDNQEE 115 N+ +N + KV+ LI RF + LA L + Sbjct: 69 AMNSELNQL-ALLDIKVNASPGWLIERFVQTYESQIVRREYIAQTDYYKTLAAALSDPLA 127 Query: 116 REKLTI---------------EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVN 160 RE+L + + + + ++++ A L YI V +V Sbjct: 128 RERLLSSLAQKAFTLKNSQLDQATESKEYTYYRLGVSARSSQEAHALLQGYIDFVAARVV 187 Query: 161 QELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI-QQ 219 +L ++K+ + + + + + ++IR++ +L A A ++KP Sbjct: 188 DDLRYNIKNQLDQTLAREKARYQLTLQNLRNDQQVKIRRLDYSLAVAQAAGISKPLYGNG 247 Query: 220 TGEDITQDTLFLLGSEALESMIKHEATRPLVFSPN--YYQTRQNLLDIESLKVDDLDIHA 277 D LG+ L + E ++ + N ++Q + + + + DL I Sbjct: 248 ATFKDDDDFPISLGTNGLRQKLDIEKSQTDLTELNAGLKNSQQYIGRLSQVHLSDLKIQP 307 Query: 278 YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 ++Y+M P +P+++++PK A+ ++L+ + G ++ G VL R+A+ Sbjct: 308 FKYLMLPSIPVQKEAPKGALIVLLSAMAGLLLSCGAVLMRHAI 350 >UniRef50_A6ADU0 Chain length determinant n=7 Tax=Vibrionaceae RepID=A6ADU0_VIBCH Length = 377 Score = 153 bits (387), Expect = 6e-36, Method: Composition-based stats. Identities = 82/359 (22%), Positives = 145/359 (40%), Gaps = 48/359 (13%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAG 72 ++IDL +L + LW+GK II+ +V I Y +E W++ A ++QP + IA Sbjct: 21 PANDEIDLKELFLALWQGKWLIILCTLVFTVATITYALTVQEWWSAKAKVSQPQLQDIAS 80 Query: 73 YNN-------AMNVIYGQAAPKVSDLQETLIG------RFSSAFSALAETLDNQE----- 114 Y +V +S+ ++LI RF F+A L E Sbjct: 81 YQQAVKRYQPLFDVYQEDGTIIISETLDSLIDAEVIFKRFLQEFNANGTKLRFMETNTTF 140 Query: 115 ----------------------EREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYI 152 E++ + + T+S+ + L +Y+ Sbjct: 141 LELRKDLLNKDDPQRLQAFYEQWFERIKGVSIGEKEDGAFTLSFQSVDKISSLALLREYV 200 Query: 153 QQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQV 212 Q V+ +NQ+L+ DL + L+ + Q + + + + Q AL A A + Sbjct: 201 QFVNQIINQQLKDDLNSILVAKYGELRQQETNLQQQTQLRLQVELERTQYALNIAEAADI 260 Query: 213 TKPQIQQTGEDITQDTLFLLGSEALESMIKHEA--TRPLVFSPNYYQTRQNLLD--IESL 268 +P ++I +GS AL++ + VF P + L +E+L Sbjct: 261 KQPVQNLGEQEIFA---INIGSRALKAKVDALKSIKDLSVFEPRLAILQTKLSQFGLETL 317 Query: 269 KVD-DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 I+++ Y+ + P+ RD PK+A+ ++L LGGM+G IVL R A R+ + Sbjct: 318 SAGTKWSINSFYYLEQAKQPLSRDKPKRALIVVLGGFLGGMLGVAIVLVRFAFRSEEKR 376 >UniRef50_A4C8G6 OtnB protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C8G6_9GAMM Length = 308 Score = 153 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 68/324 (20%), Positives = 126/324 (38%), Gaps = 27/324 (8%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV 67 S N ++I+L L+ LW+GK+ I+ VI+ A ++ Y + ST ++T D Sbjct: 2 QSVANKLNDEIELTQLISALWQGKILIVGLVILCSACSVFYALSLPNIYKSTVLLTAADE 61 Query: 68 GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFS------ALAETLDNQEEREKLTI 121 Q +G + + G AA L + + + + A +AE +D + + Sbjct: 62 SQNSGMSKLNSQFGGLAAMAGVKLGSSGVDKSALALEIIKSHAFIAEFIDKNNLKPLIMA 121 Query: 122 EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDN---IALGRKNL 178 + ++ AE I ++ + +QE+ + I +K+ Sbjct: 122 ADNWDLGTNKVSYKPSVYNAESKVWVREAKIPRLPEPSSQEVHEKFIKEHLSINSDKKSN 181 Query: 179 QDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALE 238 S+ V KD I + L A A++ K I + + I T LG A+ Sbjct: 182 LVSISIFHVSPYVAKD-----IADKLVVAINAKIKKDDIDEANKSIAYLTS-ALGQTAVA 235 Query: 239 SMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAIT 298 M K + + + + D + ++ + ++ +DSPK+AI Sbjct: 236 DMQK------------IFYELIEQQEQTKMLANARDQYVFKVIDPAVVAELKDSPKRAII 283 Query: 299 LILAVLLGGMVGAGIVLGRNALRN 322 I +LG ++G G VL R L+ Sbjct: 284 CIFGSVLGFLLGCGFVLIRYFLKK 307 >UniRef50_Q1ID96 O-antigen chain length regulator protein (Wzz) n=1 Tax=Pseudomonas entomophila L48 RepID=Q1ID96_PSEE4 Length = 346 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 66/300 (22%), Positives = 122/300 (40%), Gaps = 22/300 (7%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNA 76 +ID I+LLV L++ + ++ + AL + Y+ ++ + P IA N Sbjct: 13 EIDFIELLVVLFKEWLLVVKVASLVFALGLVYVFYVPSRYEAKLFTIPPTQNDIAQLNYG 72 Query: 77 MNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQ----EEREK-------------- 118 V D+ + + +S + D E++K Sbjct: 73 RGGSAELPLISVGDVYSSYVRNLNSESMRMEFFNDVYFPSLAEKQKTSLRSDLYRQFFAA 132 Query: 119 LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNL 178 L+I K+Q ++ + E A + QY Q D+ +E+ K++ + + NL Sbjct: 133 LSILQGGKDQSDRYLITASSSSPEEAAKWVKQYTQMAGDRAKREVLKNIYSDALVKADNL 192 Query: 179 QDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI--QQTGEDITQDTLFLLGSEA 236 + +R ++ A+ ++D RI ++ EAL A + KP I + + ++ GS+A Sbjct: 193 EKQIRREQESARRERDDRIARLTEALVIARSVGLVKPPIISAELTAQMNGSLTYMRGSDA 252 Query: 237 LESMIKHEATR--PLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPK 294 LE+ I + R F N Q + SL++D I Y+ ++P R SPK Sbjct: 253 LEAEIANLKKRSSDDPFISNLRQREAEVSFYRSLRIDPALIEVYQQDGDLIVPDRPVSPK 312 >UniRef50_Q1N5G1 Lipopolysaccharide biosynthesis n=1 Tax=Bermanella marisrubri RepID=Q1N5G1_9GAMM Length = 388 Score = 152 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 60/364 (16%), Positives = 129/364 (35%), Gaps = 46/364 (12%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD 66 + + ++ ++IDL DL + K+ ++ ++ I LA YL A E + + +I P Sbjct: 9 QLDNRPNNSDEIDLFDLWDDVVENKVWVLAGLLGCIILAALYLLRATEIFETQVVIKPPS 68 Query: 67 VGQIAGYNNA----------------MNVIYGQAAPKVSDL--QETLIGRFSSAF----- 103 + N + I+G A + + L + AF Sbjct: 69 DVHVLELNPPQLSATKLSSKGEAVIYEDEIFGLTAEQAYQEAQKAVLSKEYRKAFFKDHI 128 Query: 104 -------------SALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQ 150 + + N + ++ + K+ + +S+ ++ + L Sbjct: 129 PVIEEFGTVYSDKLLMNQNFANFDRLFSFSVSNAKKDTEQFTKLSFEFPDSQESAELLNA 188 Query: 151 YIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQA 210 ++ K +E++ L + NLQ + + + +++ + + EA A + Sbjct: 189 FVVYALVKKLEEIKTTLSGKVQAEILNLQYQVDKLKEEYKGERNRTLLLLNEAKHIAEKV 248 Query: 211 QVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLV----------FSPNYYQTRQ 260 + KP + + L++ GS+AL + I R + F Q Sbjct: 249 GINKPAFDKNQVLTEEPPLYMYGSKALNAEIGAIKNRDSMAKDLSFGEEYFIEGVSQLLY 308 Query: 261 NLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 + ++ L+VD + + + P PKK + L LA + G G + L A Sbjct: 309 RIDQLKKLEVDYSKVKLALIDEEAIPPTSPIKPKKLLILALAGVAGLFGGIMLALIMAAF 368 Query: 321 RNYN 324 + + Sbjct: 369 KRHK 372 >UniRef50_A4Y8H9 Lipopolysaccharide biosynthesis n=30 Tax=Gammaproteobacteria RepID=A4Y8H9_SHEPC Length = 329 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 50/320 (15%), Positives = 100/320 (31%), Gaps = 27/320 (8%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 ++IDL +L +W+GK II + A+ + + S A++ Q G Sbjct: 22 QDDEIDLRELFSVIWQGKWLIIAITAIFAVGAVIFAIKQPNIYKSEALLAPVSEEQGGGL 81 Query: 74 NNAMNVIYGQAAPKVSDL-------QETLIGRFSSAFSALAETLDNQEEREKLTIEPSVK 126 + + G A+ +L + L + +E + L Sbjct: 82 SALASQFGGLASLAGVNLGGKNGTDKTQLAIEVLKSRQFTSEFIQKHNILADLMAAEKWD 141 Query: 127 NQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQE 186 + + + + QE K I++ Sbjct: 142 ADADKIIYAPALYNEQTNTWVREVKAPIKPEPSMQEAYKVFNKIISV------------- 188 Query: 187 VVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQD--TLFLLGSEALESMIKHE 244 +E + + + A Q IQ + + SE L I Sbjct: 189 NSVKETGMVTLSVEHLSPIVAQQ--WVTWLIQDINKVMKDRDVAEANRSSEFLNKQI-AL 245 Query: 245 ATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVL 304 + + Y + I + + D + ++ + + P + PK+A+ +L + Sbjct: 246 TNVADIRTILYKLVEEQAKTI--MFAEVRDEYVFKTIDPALAPEEKAKPKRALICVLGTI 303 Query: 305 LGGMVGAGIVLGRNALRNYN 324 LGGM+G +VL R+ +R Sbjct: 304 LGGMLGVMLVLVRHFMRKEQ 323 >UniRef50_Q5R093 Chain length determinant protein n=1 Tax=Idiomarina loihiensis RepID=Q5R093_IDILO Length = 336 Score = 151 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 40/326 (12%), Positives = 103/326 (31%), Gaps = 18/326 (5%) Query: 4 ENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT 63 N +G ++IDL +L +W GK II V ++ Y + + A + Sbjct: 23 PPNYYNGPYPQDDEIDLRELFGIIWDGKWIIIAITFVFAVGSVIYSLSLPNIYKAEATLA 82 Query: 64 QPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIG---RFSSAFSALAETLDNQEEREKLT 120 + Q G + + A V + + + + + ++ Sbjct: 83 PTEEAQGQGLGGELGGLANLAGISVGSGKVDKVTMAMEILQSRQFIKNFVQKHNILPEIM 142 Query: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD 180 L + + + + K+ + + + Sbjct: 143 AVKEWNESSGELVFNEEVYNPNANKWVRKTESSKQPAPTSWVYVNVFKNGLLVEKDEETP 202 Query: 181 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESM 240 L + + + E L + + I++ + LG L SM Sbjct: 203 GLVNL--SVSHRSPIIAHRWAEWLIQDINDHMRQRDIKEAQSSMEYLQN-ELGETNLSSM 259 Query: 241 IKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLI 300 + + + + + +++ + + ++ + ++P ++ +P +A+ I Sbjct: 260 QQVFY--------QLIEKQIQTIMLANVRPE----YVFQVLDPAVVPEQKSAPSRALICI 307 Query: 301 LAVLLGGMVGAGIVLGRNALRNYNAK 326 + LGG + +V R+ +R+ +K Sbjct: 308 VGTFLGGFLSLLVVFIRHLIRSSKSK 333 >UniRef50_C9P0E2 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9P0E2_9VIBR Length = 383 Score = 150 bits (379), Expect = 5e-35, Method: Composition-based stats. Identities = 90/360 (25%), Positives = 142/360 (39%), Gaps = 54/360 (15%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNN 75 ++IDL +LL LW GK+ III+ +V A+ + ++E W+S A +T+ IA Y Sbjct: 26 DEIDLRELLEALWNGKLIIIITTLVFAVGAVVFALNSQEWWSSKAKVTKAQPQDIAAYQQ 85 Query: 76 AMNVIYGQAAPKVSD-------------LQETLIGRFSSAFSALAETLDNQEE------- 115 + D E L RF AF++ D + Sbjct: 86 QVKQFQPVFDIYQDDGTVLVSEELDNLVDTEVLFKRFVDAFNSSNNKRDFLDSSSEFRAF 145 Query: 116 ----------------------------REKLTIEPSVKNQQLPLTVSYVGQTAEGAQMK 147 +K+T++ +Q P +S T E + Sbjct: 146 KAKLETETETETETEAEAEVTRQLYAAWFQKITVKQDGIGKQSPYDISLQSTTKESSYSL 205 Query: 148 LAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYA 207 L +YI + K +Q +L+ + R L R E A + + I + + A+ A Sbjct: 206 LNEYIGIIKRKAHQNALNNLQAVVDGKRNELIQQKRILESQAVNKLVVEIERAKFAMDIA 265 Query: 208 NQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEA--TRPLVFSPNYYQTRQNLLDI 265 A VT+P + +I LG++ALE+ +K V P Q L + Sbjct: 266 KAAGVTQPIRTNSSNEIFG---IDLGTKALEAKVKALELVKNLSVVEPRLQQINAKLDML 322 Query: 266 ESLKVD-DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 E LK+D + +R++ PI RD PK+ + +IL LLGG +G IVL R A R Sbjct: 323 EYLKIDRSIRFQTFRFLESVDKPISRDKPKRTLIVILGTLLGGTLGVAIVLIRFAFRREQ 382 >UniRef50_A6VMI6 Lipopolysaccharide biosynthesis protein n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VMI6_ACTSZ Length = 346 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 80/356 (22%), Positives = 136/356 (38%), Gaps = 42/356 (11%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + +N +IDLIDL+ LW+ K+T+I+S + +A Y A EKWTSTA + Sbjct: 1 MTFSNHPSIPQQSNEIDLIDLIKVLWKKKLTVILSAFLFAIIAAIYAFTATEKWTSTAEV 60 Query: 63 TQPDVGQIAGYNNA---MNVIYGQAAPKVSDLQETLIGRF----------------SSAF 103 P + Y NA I V + ++L +F S + Sbjct: 61 IAPTGVDMGAYGNAKLRFAQIAKLPDITVDTVSKSLYAKFDRLAFSQNERRNFFSQSDEY 120 Query: 104 SALAETLDNQEEREKLTI-----------EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYI 152 L + D + +R+ L+ +P +S+ QT E AQ LAQ++ Sbjct: 121 KGLIQDQDEKAQRKILSALTTEYTAVVRPDPKKNADMFGNKISFSAQTPENAQKTLAQFV 180 Query: 153 QQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQV 212 +++K + + + + IA NL + + E QK+ + Sbjct: 181 DFINEKAFELDKNEFQMKIAQQIDNLTNEKKEIEESLVVQKEQNTENAKPLNAIPQSL-- 238 Query: 213 TKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLK--V 270 PQ + L + AL + +++L+ V Sbjct: 239 --PQTNLNSASQSSQDSALDPAMAL------LVYGDDYSRMQLRIITGQINQLKALQNAV 290 Query: 271 DDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 L Y Y P P++RD PK+ I L++ +LGG++G V+G+ L N + Sbjct: 291 KGLTAQTYTYQASPSYPVQRDWPKRVILLLVGAVLGGILGCVWVIGKQILGGNNNE 346 >UniRef50_D0Z7Z5 Chain length determinant protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0Z7Z5_EDWTE Length = 317 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 76/317 (23%), Positives = 152/317 (47%), Gaps = 3/317 (0%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 NH ++IDL+D++ QLW+GK+ + I+ +A+A Y+ + KWT+ + +++P + Sbjct: 4 KPVNHVNDEIDLLDIIRQLWQGKVIVFCVSIMFLAIAGLYIMLTTPKWTAESTLSKPYLN 63 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQ 128 Q+A Y + + + + + + N + + I Sbjct: 64 QLANYPAGVMLSQVWTMNDGDNAPVIDDAKITGNVFNTFIAMANAQILSGMDISIRPGTT 123 Query: 129 QLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVV 188 VS A+ L + + D ++L+ + ++ +L+ ++ QE Sbjct: 124 AETFIVSSTANDPALAKKNLQSALISLSDDARKQLDALMYSSLRERANSLKIQMQAQENS 183 Query: 189 AQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRP 248 A+ Q+D RI ++ ALQ ANQ + + ++ +I+ D LF+LG L +MI+HE P Sbjct: 184 ARAQRDYRISVLKNALQLANQMNIQQTKLNPASGEISDDMLFMLGVPILNTMIEHEKNLP 243 Query: 249 LVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGM 308 L F+ +Y+ ++ I K+ + ++ + + + + K+A+ L+L++LLG + Sbjct: 244 LKFNASYFDMQEMFDSINGFKLTEDNLSIFN---ATNISVDKVGQKRALILVLSLLLGVI 300 Query: 309 VGAGIVLGRNALRNYNA 325 + G +L RNALR+ N Sbjct: 301 LSCGYILLRNALRSANK 317 >UniRef50_A1JMR4 O-antigen chain length determinant n=5 Tax=Yersinia RepID=A1JMR4_YERE8 Length = 363 Score = 147 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 58/335 (17%), Positives = 130/335 (38%), Gaps = 24/335 (7%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 + E++DLI+++ ++R I I + + + G + + ++WTS AI++ G++ Sbjct: 22 PSNKEEVDLIEIISIIFRSSKLIFIVLAIFTLVGGGVVFFSPKEWTSYAIVSVTSDGKMQ 81 Query: 72 GYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIE--------- 122 + + + + L+ + + + L +EK+ Sbjct: 82 PLESIESSLSVLNIDLNITADDLLMD--FRKYYSSKDMLSKYMSKEKVNANNFAGLKGKN 139 Query: 123 -PSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDS 181 S + + ++Y G + Y+ ++ KVN L +K I +K + Sbjct: 140 INSDSDVKGNYILTYSSNLEYGLKDVFTGYVNYINRKVNDNLNDQIKFTIDTAKKMATEE 199 Query: 182 LRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTG-EDITQDTLFLLGSEALESM 240 + + +RI++++ A A A + KP I + + +G + L Sbjct: 200 YNLALQQVENEHKIRIQRLEYAASIAKAAGLQKPAIGAFDISASSNNYPISMGYDLLNRQ 259 Query: 241 IKHEATRPLVFSPN--YYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSP----- 293 ++ E + + S N + L I +L+ +D+ + Y+ +P P++ P Sbjct: 260 LEIERSITDLTSVNADLLNKKLYLNKITALQPVVIDVPTFNYLQEPSDPLQHSVPSEPIL 319 Query: 294 ----KKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 K +T+I +G + VL R +R + Sbjct: 320 QNSRKGLLTIISFSFIGLIGSITFVLMRFFVRERH 354 >UniRef50_Q1Z8B9 Ferric enterobactin transport protein n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z8B9_PHOPR Length = 349 Score = 147 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 62/350 (17%), Positives = 137/350 (39%), Gaps = 32/350 (9%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 + + +I + + L K +I+ ++ +A Y ++E W+S+ IIT+ Sbjct: 2 PSQIPNGNGNSEIGINFFMQCLQNSKWLLILCSLLTGIVASIYAFNSQEWWSSSEIITEA 61 Query: 66 DVGQIAGYNNAMNVIYGQAAP--------KVSDLQETLIGRFSSAFSALAETLDNQEERE 117 + ++ N ++ ++ AA + + I ++ + L N + Sbjct: 62 NYNDLSSLRNDVSPLFIVAAKTEKLEKIFSPNKIFIDFINEYNKPLTKSEFILSNDLLKI 121 Query: 118 K------------------LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKV 159 K + + K Q + + +AE +Q+ L+QY + V ++V Sbjct: 122 KMSNQKLEEEQQKNAFVKFWSNKIKYKKQGDNFKLIFESNSAEESQLLLSQYSKFVHERV 181 Query: 160 NQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQ 219 + D+K I L+ + L + + AL + + P Sbjct: 182 KNNIIDDVKSRIVSLVSLLEVKNDVLNEAVKANIKLEVEITKLALSVTKASNFSNPIENV 241 Query: 220 TGEDITQDTLFLLGSEALESMIKHEATRPL--VFSPNYYQTRQNLLDIESLKVD-DLDIH 276 G++ LGS+AL K + +F P ++ + + + + V+ +++ + Sbjct: 242 NGDNF---LPIELGSKALSEKYKVLSAVDDFSIFDPEIHRIKSEIKMLNDIDVNYEMEFN 298 Query: 277 AYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 YV LP+ D PK+++ +I+ + +G +G I + R + R YN + Sbjct: 299 VIGYVNVAELPLNSDKPKRSLIVIIGLFIGLFLGCVISVYRESSRYYNKE 348 >UniRef50_UPI0001C34705 lipopolysaccharide biosynthesis protein n=3 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C34705 Length = 318 Score = 146 bits (368), Expect = 9e-34, Method: Composition-based stats. Identities = 70/297 (23%), Positives = 132/297 (44%), Gaps = 12/297 (4%) Query: 27 LWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAP 86 LW K TI I ++ + YLA+AK +WTS I+ P++GQ++ Y A++ Sbjct: 19 LWVHKNTIFIITAFSMMIGCFYLALAKPQWTSVVFISSPELGQLSNYPEAVD------LS 72 Query: 87 KVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQ--LPLTVSYVGQTAEGA 144 + F+ +D EREK ++ + +++ A+ A Sbjct: 73 LREQTWADKADLSTKVFNLFLANIDAYIEREKPNSPVAIFKPEVGNYRVLTFSSTNAKLA 132 Query: 145 QMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEAL 204 Q +L + + ++ + Q L + + ++ L + +LQ L E +EQ+ L I + Sbjct: 133 QSELTELVAFLNQQTQQNLYQSIHQSLELRKHSLQRRLNALEASTKEQEQLHIALWER-- 190 Query: 205 QYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLD 264 A ++ +I+Q E+I+ + L ++ ++ + L F +Y++T+ L Sbjct: 191 --AKNQRLKGGEIKQLPENISDEPLLMMEVAVFTALFELLQDTRLPFDADYFETKTALSL 248 Query: 265 IESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 + S K+ + A + P L RDSP+ L L++L G +VG V R + R Sbjct: 249 LSSFKLSESRFQAVNIISPPSLAKHRDSPRVPFVLGLSLLFGIVVGVTYVFIRQSWR 305 >UniRef50_C7RAP5 Lipopolysaccharide biosynthesis protein n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAP5_KANKD Length = 328 Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats. Identities = 55/341 (16%), Positives = 111/341 (32%), Gaps = 35/341 (10%) Query: 1 MRVENNNVS---------GQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAV 51 M +NN + + E+IDL +L +W+GK II I ++ Sbjct: 1 MNQDNNQQNIPTQGYYPPQSRYQEEEIDLRELFSIIWQGKWLIIAITIFFAIGSVALALW 60 Query: 52 AKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDL------QETLIGRFSSAFSA 105 ++ +TAI+ D G+ + G A+ +L + +++ Sbjct: 61 LPNEYKATAIVQPNDSGRGGKLASLSGQFGGLASLAGVNLGAAESTDAVIAIEIMNSWGF 120 Query: 106 LAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEK 165 + +D E L + L + + + + + + EL + Sbjct: 121 AEQFIDKHELDVPLFAAEGWEESTDQLQLDEDIYDPQRNEWVRQAPKGKTVEPTSWELYE 180 Query: 166 DLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDIT 225 L+ + + + E+ + I + + A Q T +Q E + Sbjct: 181 QLRKRLLISQDA-------------EKGLVNISVTHYSPRIAKQ--WTDWLVQDINEHMK 225 Query: 226 QDTLFLLGS--EALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMK 283 + L + LE I + + + D + ++ V + Sbjct: 226 ERALKEANESIKYLEEQIN---QTSVAEIRAVFSELIQEQHKTKMLAQVSDEYVFKTVSE 282 Query: 284 PMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 P +D PK+A+ I+ LLGG + IVL + Sbjct: 283 AKAPEEKDKPKRALICIIGTLLGGFLSLFIVLMSGLYKREK 323 >UniRef50_Q1ZRK1 O-antigen chain length determinant protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZRK1_PHOAS Length = 347 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 70/340 (20%), Positives = 148/340 (43%), Gaps = 31/340 (9%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M++ NN ++ ++ ++ W+ K I+I+ ++ + Y A+ WTSTA Sbjct: 1 MKMSINNSMDESSQISGYTTLEWVLCFWQKKFLIVITTLIFAVAGVSYAYYAQSWWTSTA 60 Query: 61 IITQPDVGQIAGYNNAMNVIYGQA----APKVSDLQETLIGRFSSAFSALAETL------ 110 +IT I ++ ++ +Y + + ++ L+ F + F+A L Sbjct: 61 VITTNKARDIRIFSENIDNLYVNSGVGGLVSQALDEKRLLRTFVNYFNAYNNKLEFLEGN 120 Query: 111 -----DNQEEREK----------LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQV 155 D E+EK + E + Q+ ++SY ++ + L++YI + Sbjct: 121 KSIKSDFINEKEKHDFLQRFIKRINSEKVGNDSQVLYSLSYTATSSIKSHDLLSEYINFI 180 Query: 156 DDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKP 215 ++KVN+E+ LK +I K L +S + ++ A+ ++ I + AL+ A A + KP Sbjct: 181 NEKVNKEVVSSLKSDINNQMKRLTESTVSLKINAEVKQHAEILKTDYALKIAEAADLKKP 240 Query: 216 QIQQTGEDITQDTLFLLGSEALESM--IKHEATRPLVFSPNYYQTRQNLLDIESLKVDDL 273 + I +G++ L+ I H + +F P + + ++ + ++ Sbjct: 241 IAELGNSQI---FNIEIGTDGLKEKSLILHNSKDLALFEPQIDIAQAQINFLKDINLEKA 297 Query: 274 D-IHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAG 312 +AYR+V P+ + P K I ++ +++ G VG Sbjct: 298 KPFNAYRFVKDVSYPMSQAYPSKLIIILFSIIFGFSVGCF 337 >UniRef50_A6F1J1 Chain length determinant protein n=1 Tax=Marinobacter algicola DG893 RepID=A6F1J1_9ALTE Length = 317 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 45/331 (13%), Positives = 118/331 (35%), Gaps = 36/331 (10%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 + ++ ++ID+ +L LW GK III+ A + Y + + ++ ++ Sbjct: 8 PESSETRHCSDDEIDIRELFFTLWAGKWIIIIATAAFAAGGVVYALSKPDIYQASVLLAP 67 Query: 65 PDVGQIAGYNNAMNVIYGQAAPK---VSDLQETLIGRFSSAFSALAETLDNQEEREKLTI 121 + +G + + + A + + + + + L++ + E L Sbjct: 68 TEGSSGSGLSGQLGGLASLAGVSIGADASSKTVIAKEVLQSRAFLSDFISRHELAVPLMG 127 Query: 122 EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDS 181 ++ ++ A+ A+ + N +L K LK+ +N ++ Sbjct: 128 TNGWNFRERSWVFNHKVYNADAAEWRNNSM------PTNWDLVKKLKEQHVSVSENEENG 181 Query: 182 LRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMI 241 + T + Q + +Q L + ++ + E+ Sbjct: 182 MVTVR--VKSQSPVAAQQWATWL-------------------VRDINEYMRSQDIEEAEA 220 Query: 242 KHEATRPLVFSPNYYQTRQNLLDI------ESLKVDDLDIHAYRYVMKPMLPIRRDSPKK 295 + + + N +Q + + + + ++ V ++P + PK+ Sbjct: 221 SIQYLKTKLTETNITGMQQVFYQLIERETRTVMLANAQREYVFKTVDPAVVPQEKSQPKR 280 Query: 296 AITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 A+ +++A +LGGM+G I+ R + + + Sbjct: 281 ALIVVVASMLGGMLGVVILFFRAFILSCPPQ 311 >UniRef50_C3KAZ7 Putative chain length determinant protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3KAZ7_PSEFS Length = 438 Score = 135 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 60/425 (14%), Positives = 120/425 (28%), Gaps = 102/425 (24%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + N Q ++IDL +L +W+ K II I+A L +GY +A + ++++ Sbjct: 1 MNNTPQLHQYLPTDEIDLFELFHAIWKQKKLIIGCTILAGLLGVGYAFLAPRVYQVSSVL 60 Query: 63 TQPDVGQIAGYN-----NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLD------ 111 + ++ N D ET +G F + Sbjct: 61 RPAAINELDALNRSEVYKLPPADALAKVGAQLDSYETRLGFFRANLPLFEAFQQPGRSLE 120 Query: 112 ------NQEEREKLTIEPSVKNQQLPL-TVSYVGQTAEGAQMKLAQYIQQVDDKVNQELE 164 NQ + +P + + L + + +++ Sbjct: 121 QSFEAFNQNAINLVGADPKKPDALNNYLRLEMQYPNGIDGVAILNGLVAYAITQQREQVG 180 Query: 165 KDLKDNIALGRKN---------------------------------LQDSLRTQEVVAQE 191 DLK + L+D L + + Sbjct: 181 ADLKVIVNNRLNELKGKIDAARANYETGKASKIARLLEADKVKRAQLKDELSALRLQMKM 240 Query: 192 QKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQD---------------TLFLLGSEA 236 Q+ R+ ++ EA+ A + P L+ +G+EA Sbjct: 241 QRVSRLAELAEAISIAKSIGINSPTTPSAMGASAVRGAGQVMRTEVTNQKIPLYFMGTEA 300 Query: 237 LESMIKHE--ATRPLVFSPNYYQTRQNLLD------------------------------ 264 LE+ + + + + L Sbjct: 301 LEAERTALAQRSNDDFTNNRVAEISKELRMLDVNREVEVLNSRKDEDIFLQGVEPLWAEE 360 Query: 265 --IESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA--L 320 + L +D + + P+ PKKA+ + L+++ G M+G + L R+ + Sbjct: 361 ARLRGLSIDMSALKLVTVDRQAQEPLGPIKPKKALIIALSLMAGLMLGVLVALIRHFAQV 420 Query: 321 RNYNA 325 R N Sbjct: 421 RRENG 425 >UniRef50_A7I0H6 Chain length determinant protein n=1 Tax=Campylobacter hominis ATCC BAA-381 RepID=A7I0H6_CAMHC Length = 370 Score = 133 bits (333), Expect = 9e-30, Method: Composition-based stats. Identities = 54/316 (17%), Positives = 121/316 (38%), Gaps = 33/316 (10%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 + + ++IDL++L LW GK+ II+ +V + + I Y +A + ++A++ Sbjct: 3 ENEIYKDDEIDLVELFATLWNGKIKIIVITVVFLVVGILYTLIATPWYKASALVEVGYYN 62 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQ 128 N V+ + ++ E L R+ D + + + +KN Sbjct: 63 -----TNENGVVKNVMLEEPKNIIEKLKTRYIDLLK------DVEGKDVYVKSVNEIKNN 111 Query: 129 QLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVV 188 ++ +G++ E A + + IQ V D+ N+ ++ + + N++D ++ + Sbjct: 112 NKFFSIEVLGKSNEKAVKMIDEMIQSVSDEHNKIIDGYISSQ-KVKLANIEDQIKVLQND 170 Query: 189 AQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRP 248 + + +I +++ LQ + + L ++ K Sbjct: 171 KMGETENQINNVEQNLQMQKAGALN---------------------DILSALQKELKELT 209 Query: 249 LVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGM 308 + T + L ++ + V + + + PKK I L +A+L G M Sbjct: 210 DIQKIELKNTLLGQKSVIELTLEPFNYKNTSVVSQIITSKHPEKPKKLIILAVALLAGAM 269 Query: 309 VGAGIVLGRNALRNYN 324 VG VL + ++ Sbjct: 270 VGVFWVLFADFMKKRR 285 >UniRef50_A6ASH0 OtnB protein n=10 Tax=Vibrio RepID=A6ASH0_VIBHA Length = 336 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 42/342 (12%), Positives = 111/342 (32%), Gaps = 31/342 (9%) Query: 1 MRVENNNVSGQNHD----------PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLA 50 M + + + +D+ ++L ++ GK+ I I L++ + Sbjct: 1 MNMNQDKHPQVASPSSRFELSDDLNQSVDIREILKAIYSGKLYITFVTIAFCILSVFFAL 60 Query: 51 VAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQ--ETLIGRFSSAFSALAE 108 + + + A+++ + +G + G AA +L E+ + + Sbjct: 61 SRPDIYQADALLSPAENSSSSGLSQMAGQFGGIAALAGVNLNAGESSQTELAVQVMQSRK 120 Query: 109 TLDNQEEREKLTIEPSVKNQQL----PLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELE 164 +++ + L I N L + + + +V E Sbjct: 121 FIESFINKHDLLIPIMAVNNWDIGSGSLNIDADIYNEDTKEWLRDSKGLRVAKPSTLEAY 180 Query: 165 KDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDI 224 + +I Q ++ RI + A + + E + Sbjct: 181 EIFIKDI------------FQVAQDKDSGLYRITVNYYSPYVAKE--WVDWLVADINEVM 226 Query: 225 TQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKP 284 T+ ++ L+ + P+ + + + + + ++ V Sbjct: 227 RNRTIEE-TTKNLKYLSDQLVKTPITEMQSTFYKLIEEQTKSLMLAEAQEEFVFKVVDPA 285 Query: 285 MLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 ++P + PK+++ +I+ +G M+G +VL R A+ ++ Sbjct: 286 VVPELKSKPKRSLIVIVGTFMGFMLGLALVLIRYAIVKNRSE 327 >UniRef50_B0KTY6 Lipopolysaccharide biosynthesis protein n=1 Tax=Pseudomonas putida GB-1 RepID=B0KTY6_PSEPG Length = 347 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 65/343 (18%), Positives = 126/343 (36%), Gaps = 25/343 (7%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 S Q E++DL +L +W K+ I + + LA Y + + + I P Sbjct: 3 SEQYRGGEEVDLGELFKSVWAQKVLIAGLTLALLLLAALYAFTRQPVYQADLAIVAPSHN 62 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSA-----------FSALAETLDNQEE-- 115 I+ N G A V D+ E S F +L+E+ Q + Sbjct: 63 DISLINYGRGEATGLAVITVKDVYELYARHLYSENARRKVFEEIFFPSLSESQKAQPQNV 122 Query: 116 -----REKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDN 170 I + + VS A + EL K+ + Sbjct: 123 LFTRFSRLFVISKTGDDAAARYVVSVSDSEPAAAVKLADALANTAAEMTKSELVKNALSD 182 Query: 171 IALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI-----QQTGEDIT 225 ++ L + + VA+++++ R+ +++EAL A + KP I + + Sbjct: 183 ASMRAVMLDKEISGKREVARKEREDRLIKLKEALSIALSVGLRKPPIITGSASELSARMD 242 Query: 226 QDTLFLLGSEALESMIKHE--ATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMK 283 D ++ GSEA+ + I + + N Q + + LK+++ Y+ Sbjct: 243 GDLAYMRGSEAIRAEINNMAMRQSDDPYIANLRQLEERMAFYRDLKINEDAFRVYQRDGV 302 Query: 284 PMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 +P + P+K + ++ ++LG +G + L R +R A+ Sbjct: 303 LAVPDQPIKPRKVLIMLGGLVLGAGLGVFVALIRFFVRGKKAR 345 >UniRef50_A0B7Q9 Lipopolysaccharide biosynthesis n=1 Tax=Methanosaeta thermophila PT RepID=A0B7Q9_METTP Length = 280 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 50/312 (16%), Positives = 117/312 (37%), Gaps = 40/312 (12%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN 74 ++IDL D++ LW + ++ ++A+ A + + ++ ++ + G Sbjct: 6 DDEIDLRDIIRVLWENRFLVVGIFLIAVVAAGAVSIMMPSVYRASCLVALGNFGDP---- 61 Query: 75 NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTV 134 V Q+ + + S + + E ++++ IEP VK L++ Sbjct: 62 ----VYTIQSGASEILTSDAFVLDLLSRLNLSLSPGELAEFKDRMRIEP-VKGSDRLLSI 116 Query: 135 SYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKD 194 S E + L + + +D+ NQ + + + L + + + L + Q Sbjct: 117 SMETTDPEEGKRILREMVSLFEDRSNQSYTE--QRGLLLEQLSATNQLLDSVEESINQTH 174 Query: 195 LRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPN 254 +++I+ A + + L + L+ + ++ L Sbjct: 175 QAMKEIEGATGV---------------SSLEKSMLLSYKLDYLQ----NAESQRLGLMDR 215 Query: 255 YYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIV 314 Y + L+ ++SL+ V P +P++ P++ + + +A +LG M+G Sbjct: 216 YMNLHKQLILMKSLE----------IVEAPAVPLQPVKPRRMLIVGVAGMLGLMLGVFAA 265 Query: 315 LGRNALRNYNAK 326 R ALR + Sbjct: 266 FLRVALRREEQR 277 >UniRef50_Q21IT7 Lipopolysaccharide biosynthesis n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IT7_SACD2 Length = 340 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 43/317 (13%), Positives = 89/317 (28%), Gaps = 25/317 (7%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAG 72 + + L +L +W GK II A+ Y + ST ++ G Sbjct: 32 SQYDGVTLGELWGAIWGGKFLIIAITAFFSISALFYALSLPNMYKSTLVLAPAQAEGKGG 91 Query: 73 YNNAMNVIYGQAAPKVSDLQETLIGRFSS------AFSALAETLDNQEEREKLTIEPSVK 126 G AA +L R ++ L + + ++ Sbjct: 92 MGALAAQYGGLAAMAGINLGGGDSARIKQAIELIKSWPFLESFISKYNLKSQIMAVQGWD 151 Query: 127 NQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQE 186 + L Y L + + + + + + L + Sbjct: 152 RKTAKLIYDYDTYNPVTNAWMLGEGAGEPSSWSTYRVLSSMLSVSNDATTGMLN-LSVEH 210 Query: 187 VVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEAT 246 + + E + Q + Q + L + I E Sbjct: 211 YSPEVAYKWVNLLLLEINSFYQQQDIRDAQKNI---------------DYLNAKI-AETN 254 Query: 247 RPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLG 306 + S Y + + + D + + V+ + +R P + + +L V+ G Sbjct: 255 ISEMKSVFYSMIESQTKTL--MLAEVSDQYLVKSVVPAKVAEQRSKPNRVLICVLGVMFG 312 Query: 307 GMVGAGIVLGRNALRNY 323 G+VG +VL +N+ Sbjct: 313 GLVGFILVLLLYFSKNH 329 >UniRef50_Q1YPV1 OtnB protein n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPV1_9GAMM Length = 312 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 47/327 (14%), Positives = 107/327 (32%), Gaps = 31/327 (9%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 ++N + Q + ++IDL +L LW GK I+ V +++ Y ++ ++A++ Sbjct: 1 MQNQIQTPQPY-DDEIDLRELFSVLWAGKKLIVAVTAVFAVVSVIYALSLANQYKASAVV 59 Query: 63 TQPD---------VGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQ 113 + GQ+ G + + G + ++ ++ + + Sbjct: 60 SPAHSGGSSLGAMAGQLGGLASLAGINIGSGESNETQEAMEIM----QSWGFIEAFIQTH 115 Query: 114 EEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQ-QVDDKVNQELEKDLKDNIA 172 + + L + A + + + + L ++ K +A Sbjct: 116 ALQVPVYAATGWDKGSNSLKLDDDLYDAASKRWLIEDSASGENRAPSSWALYQNFKSRVA 175 Query: 173 LGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLL 232 + + ++ + + + Q A Q + Sbjct: 176 VSQD-------------KKSGLINVSVEYYSPQIAKQWVDLFISTINDYMRARKLEQVNR 222 Query: 233 GSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDS 292 E L I+ + + Y + + + +A+ V + M+P ++ Sbjct: 223 NIEYLTVQIE-KTAIADMREVFYQLIEEQTK--SKMLAEASPEYAFVTVSRAMVPEQKSQ 279 Query: 293 PKKAITLILAVLLGGMVGAGIVLGRNA 319 PK+A IL LLGGM+ VL R Sbjct: 280 PKRARVCILGTLLGGMLSVLWVLVRRY 306 >UniRef50_C1F864 Chain length determinant protein domain protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F864_ACIC5 Length = 411 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 45/387 (11%), Positives = 115/387 (29%), Gaps = 64/387 (16%) Query: 2 RVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAI 61 +V+ + ++I L+DLL L R K I ++ V + + I + +K+T+ Sbjct: 4 STNATHVTEKPQQEDEISLLDLLAALGRKKHIAIRTIAVMLVIGILLAFLLPKKFTAEVT 63 Query: 62 --------------------ITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSS 101 + G A K +++ +I ++ Sbjct: 64 LLPPQQQSSLSSMLSSQLGGLGAVASLAGGGLGLKNPNDRYIAMFKSQTVEDAMIRKYGL 123 Query: 102 AFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQ-------Q 154 A+ + + + ++ + + +S ++ A Y++ Sbjct: 124 MAEYHAKLMSAARKAFEGHVKLDGTTKDGLIHISVTDRSPARAAELANGYVEQFRKLSEH 183 Query: 155 VDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEAL-----QYANQ 209 + + + +A + NL ++ ++ +++ EAL Q Q Sbjct: 184 LAISEASQRRLFYQQQMAEAKSNLTNAEEALVKTEEKSGMIQVGSQAEALIQSGAQLRAQ 243 Query: 210 AQVTKPQIQQTGEDITQDTLFLLGSE----ALESMIKHE--------------------- 244 + +IQ LL ++ L + + Sbjct: 244 IAAKEVEIQGLQAFAAPGNPNLLQAQQELAGLRAQLAKLAGSGGNTKDQLIVPQGKLPVA 303 Query: 245 ------ATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAIT 298 R + + + ++ + + + + V + P + +PK+ + Sbjct: 304 GLDYLRKYRDVTYYQTIFNVLAQQYELAKID-EAKEGALIQVVDPAIPPDHKSAPKRLLI 362 Query: 299 LILAVLLGGMVGAGIVLGRNALRNYNA 325 L + G +G + L + N Sbjct: 363 LAGCLFAGIFLGVMLALLAEGWDHLNQ 389 >UniRef50_O66795 Putative uncharacterized protein n=1 Tax=Aquifex aeolicus RepID=O66795_AQUAE Length = 433 Score = 125 bits (314), Expect = 1e-27, Method: Composition-based stats. Identities = 56/363 (15%), Positives = 135/363 (37%), Gaps = 52/363 (14%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA- 71 ++ ++IDL +L V L + I++++++ IA A+ Y+ +A + + A+I + Sbjct: 60 YEEDEIDLYELWVVLKKRFRVILLTLVIFIAGAVAYVFIAPPVYKTEAVIFPIGGEKTNL 119 Query: 72 ---------GYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIE 122 + + + ++ K L+E +I + + + D + +E Sbjct: 120 PSILEGLPVPLPSVADKVTVESVLKSRTLRERVIEKLNLMPVLFKDLWDESRNTWRQDLE 179 Query: 123 P-----------------SVKNQQLPLTVSYVGQTAEG-------AQMKLAQYIQQVDDK 158 P SV + + T+++ + E AQ+ L + + +++K Sbjct: 180 PEDIPTILDGAELLEDLISVSSNKKTGTITFSVEFPEDPHMAYKIAQVSLEEAYKILNEK 239 Query: 159 VNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQ 218 L K + + K + + + E V + I+++ + +++ K + Sbjct: 240 S-WSLAKKHRIFLENQIKEVLNKQKVLEEVYLKFIKGEIKEVPIVVDERFISKIFKESLN 298 Query: 219 QTGEDITQDTLFLLGSEALESMIKHEAT---RPLVFSPNYYQTRQNLLDIESL------- 268 D L + LE I + NY + + +++L Sbjct: 299 YENNDKFDIPGNL--KQNLERNIPIAKGMNRNLPEYQFNYQKLQWQFEVLKNLLSTLFQQ 356 Query: 269 ----KVDDLDIHA-YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 K +++ ++ + P +P + PKKA+ L ++ + G G + + L N Sbjct: 357 YQIAKANEVKESVSFQIIDPPYIPQKPAKPKKALILAVSFVSGLFTGIFLAFFKEWLNNA 416 Query: 324 NAK 326 + Sbjct: 417 RKR 419 >UniRef50_B5JNI6 Chain length determinant protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNI6_9BACT Length = 333 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 49/316 (15%), Positives = 109/316 (34%), Gaps = 32/316 (10%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI-AG 72 + +++ LIDL +W+ K ++ + + Y E + + A + + G Sbjct: 20 EEDELSLIDLWNIVWKRKWPWLVFGPLFGIFGVFYALNQTEIYRAEATLAPNSEEKSGGG 79 Query: 73 YNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEERE---KLTIEPSVKNQQ 129 + G A+ +L + A + L E K + Sbjct: 80 LSALAGQFGGLASMAGLNLGGGGSTETAIATLKSRQFLTPFITTETSLKALFPKEWDEET 139 Query: 130 LPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVA 189 TV+ + L Y + K + ++ +D K + L D +A Sbjct: 140 KAWTVAKERRNDSNTPTDLEAY--EFFTKNSLKVSEDKKSGLVTLAVELPDPK-----LA 192 Query: 190 QEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPL 249 E + + ++ L+ QA++ + D DT L EAL +I+++ Sbjct: 193 AEWTNQLVGKLNSHLR--QQAKIESERNLAYLNDQLSDTRVLEIREALYGLIENQTK--- 247 Query: 250 VFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMV 309 ++ + + +A++ + ++P R PK+++ +I + +LGG Sbjct: 248 ----------------NAMLANAKEEYAFKVIDPAVVPELRVRPKRSLIVIASGMLGGFF 291 Query: 310 GAGIVLGRNALRNYNA 325 G + + + Sbjct: 292 GLFLCFVFHFVDTAKK 307 >UniRef50_Q2LWK4 Hypothetical membrane protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LWK4_SYNAS Length = 342 Score = 125 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 44/326 (13%), Positives = 111/326 (34%), Gaps = 23/326 (7%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 + ++I+L+DL +W+ + I V+ A+ L + + A+I Sbjct: 8 YGYPPNGLEEDEINLLDLWRVIWKRRRFIGALVVAAVFLTAAASLFMTNVYQAKAVIVPV 67 Query: 66 DVGQ------IAGYNNAMNVIYGQAAP---KVSDLQETLIGRFSSAFSALAETLDNQEER 116 ++ + + G A P +++ L L Sbjct: 68 TAKDGGGGGTLSALASQFGGLPGIALPGSASATEIVSLLKSNVLREKIVERYRLMPVLFY 127 Query: 117 EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRK 176 E+ ++ + ++ +G + A + + +E L D + L Sbjct: 128 EQWDSGKKDWKREEGINLNPLGWLSNMAAAV-QPTDAKAVSRQGEEGIPLLWDALRLLDD 186 Query: 177 NLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTL--FLLGS 234 ++ + +E D ++ A++ ++ + +T + L Sbjct: 187 MVKINHNIKEQTITLTVDYEDPEL--------AAKMAGYFLETLTDHMTAEAKRVALTNR 238 Query: 235 EALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPK 294 LE+ + + PL+ Y Q L ++ + + A++ + P +P ++ PK Sbjct: 239 AYLEAQL-AKTADPLIRQKIYNLIAQQLET--AMMTEVKENFAFKVIDPPRVPDKKIKPK 295 Query: 295 KAITLILAVLLGGMVGAGIVLGRNAL 320 +A+ ++L+ ++ +G L Sbjct: 296 RALMVMLSFVVALFLGVFSAFFLEYL 321 >UniRef50_A8FXK9 Chain length determinant family protein n=1 Tax=Shewanella sediminis HAW-EB3 RepID=A8FXK9_SHESH Length = 317 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 42/323 (13%), Positives = 100/323 (30%), Gaps = 22/323 (6%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 ++ + N + E + + LWR K II+ + + Y + ++AI Sbjct: 2 SSEIERLNSNTEVVSFKAMFAMLWRTKWFIIVFTGLISVATVIYAINVPNVYRASAIYLP 61 Query: 65 PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGR------FSSAFSALAETLDNQEEREK 118 G G A+ +L + F + + L +D ++ Sbjct: 62 KSSDDAGGLAQLAGQFGGLASMAGINLGGGGADKTAAAIEFMKSRAFLQAFIDKRDLTVP 121 Query: 119 LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNL 178 + + + L + A E + I++ ++ Sbjct: 122 ILAAKGWEQESGNLLIDPELYDESKQVWVRAAPPGFQVTPTAWEAYDLFRKMISISEQSK 181 Query: 179 QDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALE 238 + ++ + + L A + +QT + I L +A Sbjct: 182 KGFVKIELEYYSPDL---AAKWLGWLVEDLNAYWKTREHEQTQKSIA-----FLTKQAEN 233 Query: 239 SMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAIT 298 + + S Y + ++ + D + + ++P ++ +P +A+ Sbjct: 234 AQLSELR------SVFYQLIAEQTK--NTVLAEVSDEVLFETIAPIVVPEQKSAPSRALL 285 Query: 299 LILAVLLGGMVGAGIVLGRNALR 321 +L LGG++ + L A+R Sbjct: 286 CLLGFALGGVLSCILGLFYCAIR 308 >UniRef50_Q39TL3 Lipopolysaccharide biosynthesis n=1 Tax=Geobacter metallireducens GS-15 RepID=Q39TL3_GEOMG Length = 409 Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 50/383 (13%), Positives = 119/383 (31%), Gaps = 57/383 (14%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M N+ L+D + + + A +A+ Y + +T+ + Sbjct: 2 MLHSENSTDDTRTSKPLFTLLDFAAVIIKHWRLTACITLAAALVAVIYTLMLPNLYTARS 61 Query: 61 IITQ---------PDVGQIAGYNNAMNVIYG--------QAAPKVSDLQETLIGRFSSAF 103 +I +GQ+AG + G A +++ LI RF Sbjct: 62 MILPLEDDREGVGAALGQLAGLAGVGRIGLGNPSKADVYLAMLNGETIRDPLIDRFRLLE 121 Query: 104 SALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ-- 161 + A+ + +V + +T++ + A Y++++ N+ Sbjct: 122 AYEAKYRTEAYGALDRNVAVTVGKKDGIITIAVDDRDPRRAAEMANAYVEELGRLANRLN 181 Query: 162 -----ELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEAL-----QYANQAQ 211 L+ +A R +L + + + K + + +A Q Q Sbjct: 182 MASAGNDRMYLEKRLASARVDLAKAEDALKAFQSKNKAVSVSDQAKATIDGVAQLRAQLA 241 Query: 212 VTKPQIQQTGEDITQDTLFLLGSEA----LESMIKHEATRPLVFSP-----NYYQT-RQN 261 + Q+ T + + S+A L++ I S + Q +Q Sbjct: 242 AQEVQLSAYRSQFTDSSQEVRTSKAAIGRLQAQIARLEGNGGGGSAIPSVGSMPQLGQQY 301 Query: 262 LLDIESLKVDD------------------LDIHAYRYVMKPMLPIRRDSPKKAITLILAV 303 L + K+ + D+ ++ + +P ++ P + + +++A Sbjct: 302 LRLMRDFKIQETMVELLAKQYEVARMSEVKDVSPFQVLQVAKVPEKKSKPHRTLIVLVAA 361 Query: 304 LLGGMVGAGIVLGRNALRNYNAK 326 L + + L + + Sbjct: 362 LTAFLCSIYLSFVLEHLDRMSEQ 384 >UniRef50_A1SRR6 Chain length determinant protein-like protein n=2 Tax=Psychromonas RepID=A1SRR6_PSYIN Length = 347 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 69/347 (19%), Positives = 120/347 (34%), Gaps = 60/347 (17%) Query: 37 SVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSD------ 90 V IA ++ Y A+E W + + P V +A N + Sbjct: 2 ICAVGIAGSVYYALNAQEWWVAKGKVIAPQVNDVAALYAQSNKVSAILNSNDLLNSNSNN 61 Query: 91 ----------------LQETLIGRFSSAFSAL------------------------AETL 110 TL F +AF++ Sbjct: 62 NGQDTKQVSKELVDLFEPSTLFRNFINAFNSTINKKHFLETNPAFLAYLQVKQITVPSKG 121 Query: 111 DNQEEREKL---------TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ 161 QE R++ I S+ +Q L +S+ T E + L +YI + + V + Sbjct: 122 SAQESRQQYLIVLNNWMNKINASLNSQTSELALSFRSATKESSAELLNEYILFIGENVRE 181 Query: 162 ELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTG 221 + I + LQ SL+ E A+ + + +++ + A Q A+ + + + Q Sbjct: 182 NQLEKFLLFIDSAKNELQVSLQMTEQKARRELAVLLQKTEYAYQIASHSGLVEYQANLNK 241 Query: 222 EDITQDTLFLLGSEALESMIKHEA--TRPLVFSPNYYQTRQNLLDIESLK-VDDLDIHAY 278 E + LG +AL++ I V P+ L + L+ D+ Y Sbjct: 242 E--GELFQINLGEKALKAKIDVLKSIQDLSVLEPSLAIMTITLDALNKLEFSDNSSFTPY 299 Query: 279 RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 RY+ P+ R +PK+A+ +ILA LL GM+ I L + Sbjct: 300 RYLEVVEPPLNRSAPKRALIVILATLLAGMLSIFIALVHYFMTKKEQ 346 >UniRef50_C5V7I4 Lipopolysaccharide biosynthesis protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V7I4_9PROT Length = 343 Score = 120 bits (299), Expect = 8e-26, Method: Composition-based stats. Identities = 56/341 (16%), Positives = 118/341 (34%), Gaps = 45/341 (13%) Query: 1 MRVE-NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTST 59 M ++ N Q ++I+L+DLL+ + + II + A LA+ Y + +T+ Sbjct: 1 MSMQANQTAVQQAVQDDEINLMDLLLVIAKHNRFIIKLTLGAAVLAVIYALMQPNIYTAK 60 Query: 60 AIITQPDVGQIAGYNNAMNVIYGQ-----------------AAPKVSDLQETLIGRFSSA 102 ++ P + + K +++ LI RF Sbjct: 61 TVLMPPQQPSSSTSVLLGQLGGLAGMAGGALGVKNPSDLYAGMLKSHMIEDALIKRFKLM 120 Query: 103 FSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 A+T++ + + + +TV Y + + A Y++++D V + Sbjct: 121 ELYQAKTMEPVRAALEGSTVVAAGKD-GFITVEYSDKDPKLAAAIANAYVEELDSLVRTQ 179 Query: 163 LEKDLKDNIALGRKNLQDSL----RTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQ 218 ++ K L D R + + Q R+ Q+ A A P+ + Sbjct: 180 AAREALGRKQFYEKQLADVRAGLGRAELEMKVFQDQNRVFQLGGGAGVALGASGGIPKAE 239 Query: 219 QTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAY 278 I +D + L +M + + + + N + Sbjct: 240 LEYVRIARDVKYN--EMLLAAMAQQVTSATIDAAKNLPTLQ------------------- 278 Query: 279 RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 + K ++P ++ PK+A+ ++LA +L +G R A Sbjct: 279 -VLDKALVPEKKSKPKRAMIVMLATILAFFIGIIWAFVREA 318 >UniRef50_P44063 Uncharacterized protein HI0866 n=7 Tax=Haemophilus influenzae RepID=Y866_HAEIN Length = 207 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 89/205 (43%), Gaps = 6/205 (2%) Query: 128 QQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEV 187 ++ L +++ +T + AQ L +Y+ V + ++ K L L+ S E Sbjct: 2 DKIALKITFSAETPKYAQSVLTEYVNFVSQYSLNQTNQEFKQGFNLRLDELRFSKEQIEE 61 Query: 188 VAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDIT---QDTLFLLGSEALESMIKHE 244 E+K +++ + AL A +A + D LF+L + L++ + Sbjct: 62 NLTEEKKVQVENLTNALDIAKKAGIKDFSRGNNISDSKLADGTYLFILAEKYLQAQLDIA 121 Query: 245 ATRPLVFSPNYYQTRQNLLDIESLKVD---DLDIHAYRYVMKPMLPIRRDSPKKAITLIL 301 P+V+ NYY T + L + L D+ Y Y+ P P+ +D+PK+++ L + Sbjct: 122 KNTPVVYPANYYITDRQLFKLNKLASQLELVEDVKTYYYLSSPDYPVVKDNPKRSLILAI 181 Query: 302 AVLLGGMVGAGIVLGRNALRNYNAK 326 ++G ++ +L + ++ + Sbjct: 182 GFIIGILLPTFFILLGSVIQTNKKQ 206 >UniRef50_B3E8V9 Lipopolysaccharide biosynthesis protein n=4 Tax=Desulfuromonadales RepID=B3E8V9_GEOLS Length = 422 Score = 116 bits (291), Expect = 7e-25, Method: Composition-based stats. Identities = 49/376 (13%), Positives = 113/376 (30%), Gaps = 57/376 (15%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV 67 + +I+L+DLL+ L + II V A+ +T+ +I + Sbjct: 13 HTTPYPVEGEINLLDLLLVLAKRWRMIIGVPFVVAAITAIITLFMPNIYTAKTMIIPSED 72 Query: 68 GQIA-----------------GYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETL 110 K +++ +I +F A+ Sbjct: 73 SSSGMGALMAQLGGLVTMAGGPLGGKTTADLYVTMLKSETVKDPIIDKFKLMEKYEAKLR 132 Query: 111 DNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ-------EL 163 N ++ + +TVS+ + + A +Y+ Q+ Q Sbjct: 133 SNVYLTLDGATAINLGKKDGVITVSFSDEDPKLAAAIANEYVDQLGKLSAQLNMTGATNN 192 Query: 164 EKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEAL-----QYANQAQVTKPQIQ 218 + L+ I + +L + ++ + K + + +A Q Q V + ++ Sbjct: 193 RRFLEKQITETKADLSKAEEELKIFQSKNKSISVPDQAKATIEGVAQLRAQLAVKEVELG 252 Query: 219 QTGEDITQDTLFLLGSEALESMIKHE------ATRPLVFSPNY----YQTRQNLLDIESL 268 T ++ + +A + ++ + P + L + Sbjct: 253 TLQRQFTDNSQEVKSVKAAVAQLRGQIASLEGKGNSSSAIPQLGAVPQLGQDYLRLMREF 312 Query: 269 KVDDL------------------DIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVG 310 K+ + D ++ + K +P R+ PK+A +ILA G + Sbjct: 313 KIQEAVLEMLTKQYEMAQVSEAKDTAPFQLLEKAKVPERKSKPKRAQIVILAAFATGFLM 372 Query: 311 AGIVLGRNALRNYNAK 326 + N + + Sbjct: 373 VLLAFLLNFVEQMRPE 388 >UniRef50_C4KCI7 Lipopolysaccharide biosynthesis protein n=1 Tax=Thauera sp. MZ1T RepID=C4KCI7_THASP Length = 407 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 49/365 (13%), Positives = 109/365 (29%), Gaps = 56/365 (15%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 D ++I L+DL + L + K I+ ++ AL +G + +T+T I P Q Sbjct: 23 DDDEISLLDLAIVLAKFKKLILGLPVLVGALTVGATLLMTPIFTATTAILPPQQSQSTAS 82 Query: 74 NNAMNVIYGQAAPKVSDLQETLIGRFS----------------SAFSALAETLDNQEERE 117 + + + + + + + Sbjct: 83 ALLGQLGGLAGIAGAAAGIKNPSDLYVGMLKSRTVADAMIARFDLVNYYEDEFAEDARKS 142 Query: 118 KLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKV-------NQELEKDLKDN 170 + + +T+S + E A Y+++++ + + Sbjct: 143 LENVSSFTAGKDGIITISVDDKDPELAAKMANAYVEELNRLTEVLAVTEASQKRLFFERQ 202 Query: 171 IALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEAL----------------------QYAN 208 + R L + + I +A+ +A Sbjct: 203 MVDARDRLVAAEIEARSAMERGGLASIDAQGQAMIEVTARLRGQISVKEVEIGAMRAFAA 262 Query: 209 QAQVTKPQIQQTGEDITQDTLFLLGSEALE----------SMIKHEATRPLVFSPNYYQT 258 + QQ + + + G+ AL + + R + + YQ Sbjct: 263 EENPRLKAAQQELLALQTELARIEGASALRDTQVGGESSAAATNLQLLRNVKYYETLYQM 322 Query: 259 RQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 ++ ++ + D + + + P R+ PK+A+ +ILAVL G V I + Sbjct: 323 LAQQFELAKIE-EAKDSALIQVLDTAIPPERKSKPKRALIVILAVLAAGFVAVLIAFMKE 381 Query: 319 ALRNY 323 A + Sbjct: 382 AAQRA 386 >UniRef50_B9ZNL2 Lipopolysaccharide biosynthesis protein n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZNL2_9GAMM Length = 371 Score = 116 bits (290), Expect = 9e-25, Method: Composition-based stats. Identities = 43/359 (11%), Positives = 95/359 (26%), Gaps = 57/359 (15%) Query: 10 GQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQ 69 + ++I L+DL L R K I I + L Y + ++ I Sbjct: 23 NHSRYDDEISLVDLWNVLSRRKWWIAAVTIAVLLLGTLYGFLKTPSYSFQTTI------- 75 Query: 70 IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQ 129 + + ++ T + + L + E + Sbjct: 76 ------QLGQDDRGNPVEDPNVTVTFLNNVLIP-GIWRDLLADSPETRPPEASARYVDGT 128 Query: 130 LPLTVSYVGQ-TAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVV 188 + ++ + A +L + + + + D++ +A R+ + Q Sbjct: 129 EYVHLTTSAPMDRKEAVEQLHTLTTRALRQNHVQHIDDIRAELADQRREQELQHAAQLEQ 188 Query: 189 AQEQKDLRIRQIQEALQ-----------YANQAQVTKPQIQQTGEDITQDTLFLLG---- 233 Q D + A Q P +Q + Sbjct: 189 LQGDLDSITEHKERATSRLELLTEERALLEEQIDGLHPLREQLDAALADTDQSAAPLWSM 248 Query: 234 ---SEALESMIKHEATRPLVFSPNYYQTRQNLLDIES----------------------- 267 + ++ E + + Q L ++ES Sbjct: 249 MPLTSIVDMRYSAERRLRTELPDHVQEVEQRLSELESSSERIASQMEREQSRHEIAMAAL 308 Query: 268 -LKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 + + R + + P +++ + L+++LG M+G R L N A Sbjct: 309 DRREQRVRETVARGSDYALASNTPEGPGRSLFVALSLILGLMLGVFGAFFREFLANVRA 367 >UniRef50_C7M6P7 Lipopolysaccharide biosynthesis protein n=2 Tax=Capnocytophaga RepID=C7M6P7_CAPOD Length = 355 Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 53/353 (15%), Positives = 121/353 (34%), Gaps = 34/353 (9%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 NN + ++IDL+ L+ +LWR K +I + ++ + + I + +++T+T I+ Sbjct: 2 ENNHHNTIREEDEIDLLQLINKLWRAKKSITVFTLIFMVIGILVALFSAKEYTATTIMVP 61 Query: 65 -----PDVGQIAGYNNAMNVIYGQAAPK--VSDLQETLIGRFSSAFSALAETLDNQEERE 117 G + G + G +I L + Sbjct: 62 QATDSKSTGGLGGLAAMAGINLGGNNADAIPLTTYSKIIESVPFKKKLAQTKLTFSDISN 121 Query: 118 KLTIEPSVKNQQLPLTV-----SYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIA 172 +T E KN P + + +E + K + + + +NI Sbjct: 122 PITYEQYCKNYAKPSILGSVMSIFRSNPSEPSIKVQDTTHITSISKEERAILNSIDNNIK 181 Query: 173 LGRKNLQ----------DSLRTQEVVAQEQKDLRIRQIQEALQYANQA----------QV 212 L + ++L +++ Q+ L+ + LQ A + Sbjct: 182 LNLNEKEGYITLSYAMPEALPAAQMLQSAQQLLQETVTEFKLQKAKEEFDFVQQRFIEAE 241 Query: 213 TKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDD 272 + +Q QD L S ++ ++ + Y + + L + +K+ + Sbjct: 242 KDFKAKQYAVAGFQDRNRDLFSNLPQTRLQQLQAEYNLAFNVYTELAKQLET-KRIKMKE 300 Query: 273 LDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 D + + +P R PK+ + + + +G ++G G V ++ + + Sbjct: 301 -DQPIFTIIEPVSVPNERSKPKRMMIIAIWTFVGLIIGIGNVFLKDFRQQLKS 352 >UniRef50_Q2SJH6 Uncharacterized protein involved in exopolysaccharide biosynthesis n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SJH6_HAHCH Length = 317 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 46/332 (13%), Positives = 106/332 (31%), Gaps = 43/332 (12%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 + + ++ L D+L+ LW+GK II ++++ A+ + S+ ++ Q Sbjct: 10 ETYKDNEVSLRDILLTLWKGKWIIISLTVLSLVAALVMAKNQPNIYKSSILLVPAQEEQK 69 Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQL 130 G G A+ ++ +AE L + +E LT +K++Q+ Sbjct: 70 GGLAGIAGQFGGLASIAGINIGGGKSD--------VAEALAILKSQEFLTR--FLKDEQI 119 Query: 131 PLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQ 190 ++ E Q E + ++ K + + Sbjct: 120 KSSLFIENWNKESGQW---------------EKKDSFLGSLWGRLKGDSNPKDPSSLEPS 164 Query: 191 EQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTL-FLLGSEALESMIKHEATRPL 249 QK ++ I + L + + + + L + L S ++ + Sbjct: 165 WQKTYQLF-ISKHLSVSEDPKSGLVTVSVMAYEPEDAAHWAALLIDKLNSHVRLQKKAEA 223 Query: 250 VFSPNYYQTRQNLLDIESLK----------------VDDLDIHAYRYVMKPMLPIRRDSP 293 S Y + L ++ D + +R + +P ++ P Sbjct: 224 ERSIEYLNNQIKLTLNAEMQRVLYQLVEAQAKVAMLASVRDDYVFRVIDPAFIPEQKYKP 283 Query: 294 KKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 + +I+ + G + G +VL + Sbjct: 284 NRFQMVIVGGIAGCVFGVLLVLFIQIITEKKQ 315 >UniRef50_D0WWA9 Putative uncharacterized protein n=3 Tax=Vibrio harveyi group RepID=D0WWA9_VIBAL Length = 300 Score = 115 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 53/328 (16%), Positives = 112/328 (34%), Gaps = 43/328 (13%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ------ 64 ++ ++D+ +L+ LW+ K+ I+ V ++ + + S A++ Sbjct: 1 MENNQLELDIGELIRSLWQQKIMIVAITFVFAVASVLFAMSKPNLYKSEAVLFPVADNTP 60 Query: 65 -PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETL-------DNQEER 116 +GQ+ G +++ + L+ F AF L Sbjct: 61 SSAMGQLGGLAALAGFGSQKSSKQAIALESLRSRAFLGAFIERRNILIPLMAIEHWDATS 120 Query: 117 EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRK 176 K+ I+P + ++ V + L KV EL + D+ Sbjct: 121 GKVYIDPKIYDESTDTWTRVVSEGKTPKPTILEA------TKVLNELL--VIDSNKTSGS 172 Query: 177 NLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEA 236 + +A++ D I + E + I Q +I + Sbjct: 173 TIVSLTNQSPDLAKQWLDWLISDLNEWM--------KNKDINQAKNNI----------QY 214 Query: 237 LESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKA 296 LE + + + Y + + + + + + + + P++P +DSP +A Sbjct: 215 LEKQLN-LTNLSEMQNVFYQLVEEQTKKL--MLAEAQENYIFDIIDPPVVPEEKDSPSRA 271 Query: 297 ITLILAVLLGGMVGAGIVLGRNALRNYN 324 I +L L+GG++ I L R AL + Sbjct: 272 IICVLGTLIGGVLAMVIALFRIALSRKH 299 >UniRef50_Q74C20 Capsule polysaccharide export protein, putative n=1 Tax=Geobacter sulfurreducens RepID=Q74C20_GEOSL Length = 406 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 53/378 (14%), Positives = 119/378 (31%), Gaps = 61/378 (16%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 N N S N + E+I +++ L + G I I ++A L++ + +T I Sbjct: 10 NANDSSNNFEAERICILEYLEVVLCGWKLITILTVLAFVLSLVISISLPNVYKATTRILP 69 Query: 65 PDV------------GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDN 112 P G G + G+A P + S + Sbjct: 70 PQQDSGLLGLMLGQAGSFGGVGPLATDLLGKANPADMYVSIMTSEAISDKIIDKFNLMKV 129 Query: 113 QEEREKL--------TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQ-------QVDD 157 E+ ++ I+ + +T+S + + A Y+ Q++ Sbjct: 130 YNEKYRIDAYKVLDNNIDILAGKKDGIITISVEDEDPQRAANIANAYVNELSNLLVQLNS 189 Query: 158 KVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI 217 K + + ++ +A + +L S + + K + + +A +N AQ+ I Sbjct: 190 KESAQNRVFYEERLAKAKVDLARSEDNLKQFQTKYKVVSVADQAQA-AISNIAQLNAQLI 248 Query: 218 QQTGEDITQDTLF---LLGSEALESMIKHEATRPLVFSPNYYQT------------RQNL 262 Q + F L + ++S I + +Q Sbjct: 249 AQEIQLSNLRKQFTEDSLEVKNVKSTINGLRNQISRIESREAGGAIPNMGLIPELGQQYF 308 Query: 263 LDIESLKVDDL------------------DIHAYRYVMKPMLPIRRDSPKKAITLILAVL 304 + KV + D + + + +P ++ PK+++ + ++ + Sbjct: 309 RLMREFKVQEAIVDLLTKQFESAKLGELKDSYYVQIIQTARVPDKKSKPKRSMIVAMSTV 368 Query: 305 LGGMVGAGIVLGRNALRN 322 + G V+ + L Sbjct: 369 ITFGFGILSVIIMHMLSK 386 >UniRef50_A7AKH2 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AKH2_9PORP Length = 364 Score = 113 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 49/359 (13%), Positives = 114/359 (31%), Gaps = 47/359 (13%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 ++ NN + + +IDLI L LW+ + I +A + +++T+T + Sbjct: 1 MDKNNHTP-SSPQSEIDLIALSGYLWKKRRFFIKCCGIATVAGLIIAFSIPKEFTTTVKL 59 Query: 63 TQ------PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER 116 + + G + G A+ + + S L + ++ Sbjct: 60 APETTDATSKMSNLGGLAAMAGIDLGSASGQDALSPNLYPDIVHSTPFLLELFPEKVTDK 119 Query: 117 EK------------------LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDK 158 EK +I + + S+ E + + Sbjct: 120 EKKYTTTLYDYIAGHQRFAWWSILMKAPLKGIAALRSFFSGNEENDGDLNPFQLTHKQED 179 Query: 159 VNQELEKDLKDNIALGRK--NLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQ 216 V + L + + + + L S++ + A + I+ Y Q + Sbjct: 180 VLKNLRQRITVYVDKKTQVVTLGVSMQDPLISADVAHSIVIKLQTYITHYRTQKAKKDLE 239 Query: 217 IQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLL------------D 264 + ++ + +A ++ E + S +Y ++ L Sbjct: 240 FTEKVLKESRSAYY----KAQQAYAAFEDGNKNIISASYRTEQERLRNEMTLTFNVYNTL 295 Query: 265 IESLKVDDLDIH----AYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 + L+ D L + Y + +P++ SPKK + L+ + L + G G ++ + Sbjct: 296 AQKLEQDKLRVQEQTPVYTIIEPATVPLKASSPKKLLILVAFIFLAFIGGCGYLIIKEY 354 >UniRef50_A4BIX4 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BIX4_9GAMM Length = 360 Score = 113 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 57/364 (15%), Positives = 119/364 (32%), Gaps = 44/364 (12%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M + + HD ++IDL L+ QL I+ + + + + +++ A Sbjct: 1 MSQNTDLAHLRPHDNDEIDLGQLIKQLIAQWPLIVGITFLGAVVGVVVALMLPKQYRVEA 60 Query: 61 IITQPDVGQIAGY------------------------NNAMNVIYGQAAPKVSDLQE-TL 95 + +P ++ N +V+ +D + + Sbjct: 61 VFDKPSTTHLSSLISQPFVDLSRQQLLEDFLKNLKTPNLIESVLDSHGLMVDNDGKALSA 120 Query: 96 IGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQV 155 R+S E + + ++VS + AQ + ++ Sbjct: 121 EKRYSLVLRMSQALRVAPVEYDFIQTLQDETPTIDQISVSLLSSEPAIAQTLINGLLEAA 180 Query: 156 DDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKP 215 K + D++ + LQ L + A QK + +++ AL A + +T+P Sbjct: 181 SAKTLADTLSDIEGAKQIALSQLQADLNQLKEAALAQKQEHLLRLRSALDVAQELNITEP 240 Query: 216 QIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNY--------------YQTRQN 261 T + +Q L+L G+ L + IK + SP + Sbjct: 241 ----TDWEASQGELYLKGTRILSAEIKSLESAQPNLSPIIVGYDEEGLAQTISPESIQGR 296 Query: 262 LLDIESLKVDDLDIHAYRYVM-KPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 L + +V + + +P + P + + + A +L G G L R A+ Sbjct: 297 LGALSDYEVPSTEALQFVGSEVAANIPANAEKPNRKLIAVAATVLAGFFGLFTALIRIAI 356 Query: 321 RNYN 324 R + Sbjct: 357 RRED 360 >UniRef50_C1DT90 Ferric enterobactin transport protein n=1 Tax=Sulfurihydrogenibium azorense Az-Fu1 RepID=C1DT90_SULAA Length = 277 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 44/325 (13%), Positives = 94/325 (28%), Gaps = 59/325 (18%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII---- 62 ++ Q + ++IDL +L +LW+ K I ++ +A +++TS + I Sbjct: 2 SLENQKYCEDEIDLFELFEKLWKRKKIIFSITLLGTLIATLVAFTIPKQYTSESSIVVVN 61 Query: 63 --TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLT 120 T P + ++ + P ++ ++ + E + Sbjct: 62 INTSPSLSLDRESLYILSQLNFPILPILNSKDLAEKVLKNNNLNIEPEKFIKNNLKVDQD 121 Query: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQD 180 + + +S A+ Y+ ++ VNQ L + L Sbjct: 122 KKSGQNKKNEVFRISISWYDPNTAKKLNEDYLIELKKVVNQNLNQFLTQ----------- 170 Query: 181 SLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESM 240 + Q QK L + I+ + ++ ++ E I+ Sbjct: 171 ------LENQYQKRLELLNIEYKKAMVEKDELKMELVKNQVEKISSG------------- 211 Query: 241 IKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLI 300 +E K + + V P P PKK + L Sbjct: 212 ---------------------YYLLELFKNNKEGF--IKVVNSPSYPTAPSKPKKGLILA 248 Query: 301 LAVLLGGMVGAGIVLGRNALRNYNA 325 + + + + L A N Sbjct: 249 IGFVSSLFLSLFVALVVEAWENRRK 273 >UniRef50_C1XU43 Chain length determinant protein n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XU43_9DEIN Length = 323 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 47/326 (14%), Positives = 108/326 (33%), Gaps = 27/326 (8%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV 67 ++ ++I L DL + L R I+ + A + + + + S A ++ Sbjct: 1 MNEAAQPQDEISLRDLYLVLKRNARMILAVTLGAALVTFAISMILPKTYRSQANLSLSVT 60 Query: 68 GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKN 127 Q ++ P +S L + R + A + + N R + + + Sbjct: 61 SQ-----QQLSGQILANLPSLSGLAGSFQDRLETRELAQSLGVANPASRYQAKFD----D 111 Query: 128 QQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEV 187 + +S G + E A+ +K+ L+ +A + +L Q Sbjct: 112 KTGIWRLSAKGSSPEEARR--------ATEKLLATARDFLESKLAQTVNSNLAALLAQAR 163 Query: 188 VAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATR 247 + E + +++I++AL + E + L + + +K + Sbjct: 164 IDAESAQIGLQEIKKALANTPPTVGADAAVASALESQGVNPLVARATSPAYASLKLQEAN 223 Query: 248 PLVFSPNYYQTRQNLLDIESLKVDDLDIHA-------YRYVMKPMLPIRRDSPKKAITLI 300 Q + + L + +I + ++ P P+R SP+ + Sbjct: 224 ---LRSQLAQAQARIETYSRLARNPQEIRTLVGQALQIQPLVAPSEPLRPVSPRPLLYAA 280 Query: 301 LAVLLGGMVGAGIVLGRNALRNYNAK 326 +A +LG ++ AL + Sbjct: 281 IAAVLGLILSVFWAFLAEALAPRRPE 306 >UniRef50_B0K509 Lipopolysaccharide biosynthesis protein n=14 Tax=Thermoanaerobacterales RepID=B0K509_THEPX Length = 315 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 53/318 (16%), Positives = 104/318 (32%), Gaps = 16/318 (5%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAV-AKEKWTSTAIITQ----PDVGQ 69 E+I L +L+ + + K TIII + A +A K + +T ++ P G Sbjct: 2 EEEISLRELIEVILKYKKTIIIVTLTATLVAAVLSFFVIKPTYEATTTLSVTDVTPATGF 61 Query: 70 IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQ 129 + P V + + + +E++T + N Sbjct: 62 FGSNTTVILPGKDSNLPTVQSDSIEKDLSLLLSSLLKYPNMSVEAFKEEVTNPIVLMNTV 121 Query: 130 LPLTVSYVGQTAEGAQMKLA-QYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVV 188 L + T E + +++ I + E D K + Q+ Sbjct: 122 KQLGLDPQKYTIENLKKQISVSVINNTNLITVTVKENDPKLAAKIADTIAQNFRTYIIER 181 Query: 189 AQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRP 248 Q D I + L ++ + + L+ + + + T Sbjct: 182 NNRQTDKLIETLN-KLITLQNDKIKEVTAELNKIQTNSQDKLLIEQK--QKQLDLLKTTR 238 Query: 249 LVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGM 308 + Y +E +K +L + K ++P + +PKK++ +I+A +LG M Sbjct: 239 DIMLEKY-------NMLELVKESELGNQSILITSKALIPDKPVAPKKSLNIIIAFILGLM 291 Query: 309 VGAGIVLGRNALRNYNAK 326 V IV +N K Sbjct: 292 VSIFIVFFMEYWKNTEPK 309 >UniRef50_A4SDR7 Lipopolysaccharide biosynthesis protein n=2 Tax=Chlorobium/Pelodictyon group RepID=A4SDR7_PROVI Length = 343 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 55/340 (16%), Positives = 104/340 (30%), Gaps = 36/340 (10%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 + ++ + Q+ ++I L+DL + L + K II + L Y +T+ Sbjct: 6 LPTQSRQPAMQDGYEDEISLLDLAITLAKYKKLIIGAPFAIAVLVSIYTLFQPNIYTADT 65 Query: 61 IITQPDVGQIAG----------------YNNAMNVIYGQAAPKVSDLQETLIGRFSSAFS 104 I P A A + LQ ++I RF Sbjct: 66 RILPPQQQSNASAMLSQLGALGALGGGSLGIKNPNDTYVAMLESRPLQNSMIKRFKLQAV 125 Query: 105 ALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELE 164 AETL + + + +TVS Q A YI ++ + Sbjct: 126 YEAETL-ADARKTLEGVTTVTTGKDGLITVSVDDQDPIRAATLANGYIDELQKLMQVFAV 184 Query: 165 KDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDI 224 D K L + K +++Q LQ A QA Sbjct: 185 TDASQRRIFFEKQLHLAKEELADAEVSLK--QLQQRTGVLQLAAQAG------------- 229 Query: 225 TQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKP 284 L G ++ R + ++ Y+ ++ L + + + + K Sbjct: 230 ---QLMGTGQAPDIALRYIRKVRDMKYAETLYEILAKQYEMAKLD-ESKESTVIQVLEKA 285 Query: 285 MLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 ++P + P+++ +++A L G + AL Sbjct: 286 VVPQDKSKPQRSKIVLIAALATGFLAILYAFIAEALNKAK 325 >UniRef50_B7AIQ3 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B7AIQ3_9BACE Length = 371 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 51/369 (13%), Positives = 117/369 (31%), Gaps = 47/369 (12%) Query: 1 MRVEN-NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTST 59 M EN + Q + ++IDLI+L ++W + + + +A + + +++++ Sbjct: 1 MSEENIQKTTQQQPEEQEIDLIELAQKVWAERKLVFKACGIAALIGLVVAFSIPKEYSTK 60 Query: 60 AIITQP-----DVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQE 114 + G + + G A+ L L + L E D + Sbjct: 61 VTLAPESAGKTSAGGMGALAAMAGINLGGASAGEDALSPELYPDIVKSTPFLLELFDVKV 120 Query: 115 EREKLTIEPSVKN-------------------QQLPLTVSYVGQTAEGAQMKLAQYIQQV 155 + +K ++ ++ + L T+S E + K+ + V Sbjct: 121 KDQKGKVDTTLYAYLDKYQRSSWMGAVVSAPFKALGWTLSLFKDKPEKREGKIDPFHLTV 180 Query: 156 DD-KVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIR---------------- 198 D+ +V + L K + I + Q+ + + Sbjct: 181 DETRVAEALSKRILVTIDKKTGVTTLEVTMQDPLISASLTDTVMHCLQNYITDYRTNKAR 240 Query: 199 -QIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQ 257 + + +A+ + Q+ ++ + + + Y Q Sbjct: 241 HDLAFTEKLYKEAKADYEEAQKKYATFADANQNIILLSY-RAEQERLKNEMELAYTVYTQ 299 Query: 258 TRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIV-LG 316 L + KV ++ Y V +P+R P K + LI V L G+ G + Sbjct: 300 VSGQL-QMARAKVQEIT-PVYTVVQPATVPLRAAKPNKIMILIGFVFLAGVGCVGWILFV 357 Query: 317 RNALRNYNA 325 ++ + + Sbjct: 358 KDLFKEWRK 366 >UniRef50_A3JJA1 Lipopolysaccharide biosynthesis n=1 Tax=Marinobacter sp. ELB17 RepID=A3JJA1_9ALTE Length = 378 Score = 107 bits (266), Expect = 6e-22, Method: Composition-based stats. Identities = 56/373 (15%), Positives = 116/373 (31%), Gaps = 56/373 (15%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV 67 + ++IDL ++ +W G+ +I VI+A+ ++I + E + + +++ Sbjct: 2 SDSRVPYDDEIDLFEIFETVWDGRWRVIGIVILAVLISIAVNVLKPELYNGSTALSKAPS 61 Query: 68 GQIAGYNNAM---NVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPS 124 Y++ A + + + F+ + + +++L Sbjct: 62 SSFIKYSSVNETLQQSGFSYAISSQSVFDMFVTEFADYDEVVKILEKSDYIKQRLQAIEI 121 Query: 125 VKNQQ------------------LPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKD 166 ++ Y + + ++ Q I+ V V Q + D Sbjct: 122 EDRNDFLVYMAKNFEILPPSENGNHWSLDYEWRDSNESKKIFTQSIEDVLANVRQTILSD 181 Query: 167 LKD-------NIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQ 219 + + ++ L L E R+ + E A + V K + Sbjct: 182 IDELARTVSIRNKNKKQRLNADLVALEDAINLDLAKRLLYLNEQTAIAKELGVEKNSLNG 241 Query: 220 TG------------EDITQDTLFLLGSEALESMIKHE----ATRPLVFSPNYYQTRQNLL 263 G + +L G +A++ I L + Y + L Sbjct: 242 NGLFQSQNTGVSLSVTSSDIPFYLRGFKAIDKEIDLLFSRSKEDRLAINNTYVSIKTQLS 301 Query: 264 DI-----------ESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAG 312 I V D D+ ++ L K + ILA +LG MVG Sbjct: 302 SIHNDVSMQQIMSAKGSVADDDVTSW-LAYDLSLATTSSQSKPVLYAILAAMLGLMVGVF 360 Query: 313 IVLGRNALRNYNA 325 VL +A+R + Sbjct: 361 NVLVSSAVRKRKS 373 >UniRef50_Q39VZ4 Lipopolysaccharide biosynthesis n=5 Tax=Geobacter RepID=Q39VZ4_GEOMG Length = 401 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 45/376 (11%), Positives = 120/376 (31%), Gaps = 61/376 (16%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + + + Q + ++I+L++LL L R K I + + A L+ Y +T TA + Sbjct: 1 MTDPMRNEQMVEEDEINLLELLQVLVRRKRLIAVMCVAAALLSAAYSLTLPNIYTGTARV 60 Query: 63 TQPDVGQIAGYNNAMNVIYGQAAP------------------KVSDLQETLIGRFSSAFS 104 P G + + G A K + + +I + Sbjct: 61 LPPQKDGGGGLSALLGGQAGALAGLAGVGGLGGGADLYVGILKSRSVADAVIKKLDLQKE 120 Query: 105 ALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELE 164 +T D + + ++ + +TV+ + + A ++ ++ K + Sbjct: 121 LETKTPDETRTKLQNVVKIQAGKDGI-ITVAADSRNPQLAARLANTFVDELGKKSVELNL 179 Query: 165 K-------DLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQI 217 L+ + + + +L+ + ++ + ++ A A++ + Sbjct: 180 TKAGTERIFLEKRLDVVKADLKKAEEALRGFQEKNRAFKVDDQATAT-IEGAAKLKAEIV 238 Query: 218 Q---QTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLL----------- 263 Q + T +A+E+ + + + L Sbjct: 239 SKEVQLASLRSYQTNENPEVKAVEAALARLRGQLGALTGGGRSNDLMLSAGAMPTLGLEY 298 Query: 264 --DIESLKVDDL------------------DIHAYRYVMKPMLPIRRDSPKKAITLILAV 303 + +K + D + + + + + P ++ PK+++ +IL+ Sbjct: 299 VRLMREVKTQEAIFEQLTKQYEVAKLGEAKDSSSIQVLDEAVAPQKKSKPKRSLIVILST 358 Query: 304 LLGGMVGAGIVLGRNA 319 + +G I + Sbjct: 359 VTALFLGIFIAFIQEY 374 >UniRef50_D1PXM6 Chain length determinant protein n=1 Tax=Prevotella bergensis DSM 17361 RepID=D1PXM6_9BACT Length = 346 Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 44/350 (12%), Positives = 100/350 (28%), Gaps = 43/350 (12%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 + D IDL + +W+ K +I++ +A L Y+ + + Sbjct: 1 MPEKKDINPIDLTKIAQSIWKHKKIYLITLPIAFVLGCFYVLSIPRYYNCQVKLAPETAN 60 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQ 128 N ++ + L + L ++D + + I+ Sbjct: 61 --TNLGNLGSLASSVGIDITGKMGHNLDAISPELYPDLMSSIDFRVSLFPVQIKTQDNRF 118 Query: 129 QLPLTVSYVGQTAEGAQMKLAQYIQQV---DDKVNQELEKDLKDNIALGRKNLQDSLRTQ 185 + + I ++ ++K EK + + R++ + + Sbjct: 119 EDNYYTYLERHRKSPWWAVIRGKISEILKKEEKSTYNGEKKVSPFLLSKRQHDIAGIIGE 178 Query: 186 EVVAQEQKDLRIRQIQE-------ALQYAN------QAQVTKPQIQQTGEDITQDTLFLL 232 V K + I A A+ Q +T + Q+ D+ + Sbjct: 179 NVKCAVDKKTNVISIDVEDQDPLVAATIADSVSSRLQTFITNYRTQKARNDLAYVKGLYI 238 Query: 233 GSEALESM-----------------------IKHEATRPLVFSPNYYQTRQNLLDIESLK 269 +++L + + NY K Sbjct: 239 EAKSLYEKARQKYGAYGDANMDLLLQSYKLKQEDLENDMQLRYNNYTAL-AMQYTAAQAK 297 Query: 270 VDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 V + A+ + +PI+ PK+ I + +LL + + V ++A Sbjct: 298 VQE-KTPAFTTLQSASVPIKPTGPKRMIIVAFVLLLTFIGTSLYVFQKDA 346 >UniRef50_C9PY96 Chain length determinant protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PY96_9BACT Length = 350 Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 42/351 (11%), Positives = 120/351 (34%), Gaps = 41/351 (11%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG-- 68 +N+ ++IDL+ + LW+ K +S VA + + + + I+ Sbjct: 2 ENNTKDKIDLVAITKTLWKNKRLFGLSCGVAFVIGAVVAFSIPKTYQTKVILAPEVSSGS 61 Query: 69 ---------------QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQ 113 + ++++ IY + P++ L F+ ++L + Sbjct: 62 SMSESLSDIASMMGVNLGKGGSSVDAIYPEIYPQIIKSTPFLTSMFNVKVTSLDGKVKEM 121 Query: 114 EEREKL---TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQY-IQQVDDKVNQELEKDLKD 169 L P + + + + G ++K+ + + + + + ++E + Sbjct: 122 PLYNYLLSYQKMPWWDSILQGIIGLFSSKGLAGREVKVNNFHLTEEQEGILHQVENMITC 181 Query: 170 NIALGRKNLQDSLRTQEVVAQEQKDLRIR-----------------QIQEALQYANQAQV 212 N+ + S+ Q+ + ++ + + + ++A+ Sbjct: 182 NVDKKTNIITISVTAQDALISASLADTVQTKMQQYVTNYRTKKARNDLAYSQKLFSEAKA 241 Query: 213 TKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDD 272 + Q D L ++ ++ + N Y + + KV + Sbjct: 242 -QYIKAQQMFGHYSDANTDLILQSFKAKQDELENEMQLRY-NIYNQTSQQMQMARAKVQE 299 Query: 273 LDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 A+ + +P+++D PK+ ++ + ++ + VL ++A +N Sbjct: 300 -RTPAFTQIQPATVPLKKDGPKRMTIVLAFMFFAFVLTSIHVLIQDAKKNN 349 >UniRef50_C1TR41 Uncharacterized protein involved in exopolysaccharide biosynthesis n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TR41_9BACT Length = 435 Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 48/387 (12%), Positives = 105/387 (27%), Gaps = 91/387 (23%) Query: 29 RGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA----------------- 71 R K II + + LAI Y +A + + + P G A Sbjct: 29 RRKWFIIKTTFIFAVLAIAYALLATPIYRAETQVIPPQSGSGAMAALAQMGVPDFAAGML 88 Query: 72 ----GYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV-- 125 + + ++ + + L+ R E + K + PS Sbjct: 89 GVTTPSDTLVAIVKSRPVLDKVIDKFGLMDREPEPGPLPVEAIKEGINTLKEKLLPSKES 148 Query: 126 -------------------------KNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVN 160 + +T+S + + A +Y+ Q+ + + Sbjct: 149 ASEEEKPKFRSDIRRGLANATSATADTKSGIITISVSDTSPDLAAEIANEYVAQLQELMQ 208 Query: 161 QELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQ-----------------IQEA 203 ++D+ + + +IR A Sbjct: 209 SLAFSQASQQRLFLEDQVKDAQYNLLQAERNLSEYQIRTGILDVGEQTSAVMEGLIKLRA 268 Query: 204 LQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTR---- 259 A + ++ Q T + L +L+ +K P+ + Sbjct: 269 EVTAKEVELRSTQTFATANNPKVKRL-QSELASLKEQLKRMEASTGSTMPSDISIKDLPD 327 Query: 260 ---QNLLDIESLKVDD------------------LDIHAYRYVMKPMLPIRRDSPKKAIT 298 + L + +K ++ + + + + P RR PK+ + Sbjct: 328 AGLEYLRLMRDMKFNETLYGMLLKQYESARISEAQEPSVVQVLAQAEPPERRSKPKRKLI 387 Query: 299 LILAVLLGGMVGAGIVLGRNALRNYNA 325 ++LA +LGG +G + N + Sbjct: 388 VVLATVLGGFIGVFGAFLKEFAANAQS 414 >UniRef50_B1XZS2 Lipopolysaccharide biosynthesis protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XZS2_LEPCP Length = 398 Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 50/373 (13%), Positives = 116/373 (31%), Gaps = 51/373 (13%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + NV + E++ LID+L+ L R K+ ++++ ++ A+G + + +T++ + Sbjct: 12 TKTGNVISDMNASEELSLIDVLLILSRRKLLLVVAPLLVGCAALGMSYLVRPTYTASVQL 71 Query: 63 TQPDVGQIAGYNNAMNVIYGQAAP------------------KVSDLQETLIGRFSSAFS 104 P Q + G A+ K + + ++ FS Sbjct: 72 LPPQQQQSGALTALLGAAGGMASALGGISGLKNPSDQWIGMLKSRAIVDAIVNEFSLREI 131 Query: 105 ALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELE 164 E ER + + + E A Y+ ++ + + Sbjct: 132 YEVEYQFKARERLEKNSRIVAGKD-GLIDIEVDDHDPERAAKIATAYVDELQNLMRTLAV 190 Query: 165 KDLKDNIALGRKNLQDSLRTQEV-------------VAQEQKDLRIRQIQEALQYANQAQ 211 + K L D+ V + + + Q+ +A + Sbjct: 191 TEAAQRRLFFEKQLSDTKTKLIKAEILLTEGGINTGVLKTNPEAAVSQLAQAQAAVTAQE 250 Query: 212 VTKPQIQQT-GEDITQDTLFLLGSEALESMIKH-----------------EATRPLVFSP 253 V ++++ Q +L +L + R + Sbjct: 251 VKVSVMRESMTNSNPQLRNAILELASLREQLHRSNRDEPERAKGSGAEYVTRFRDFKYYE 310 Query: 254 NYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGI 313 + ++ + D + + +P + PK+ + +LA +L ++ Sbjct: 311 TLFDLFARQYEMARAD-EARDGSVIQVIDPAQVPEYKSGPKRGMIAVLATILTFILSVLY 369 Query: 314 VLGRNALRNYNAK 326 VL +ALR Y + Sbjct: 370 VLASHALRGYTTR 382 >UniRef50_C6MYW2 Putative Wzz n=1 Tax=Legionella drancourtii LLAP12 RepID=C6MYW2_9GAMM Length = 344 Score = 103 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 50/312 (16%), Positives = 109/312 (34%), Gaps = 29/312 (9%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 +I LI+L ++ K ++++ ++ +AL + +K + + +T G IA + Sbjct: 6 SNTEISLIELFHLFYQKKRVLVLTTLLGLALGFAVVFFSKPVYEAAIKVTAASEGDIAAF 65 Query: 74 NNAMN-VIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIE---------- 122 N + +D+ S + A L + Sbjct: 66 NLGRSWNKSALKPMSAADIYLIFNNELLSETAKKAFFNQFYLSSLSLQQKEKYSSAHLYA 125 Query: 123 ------------PSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDN 170 V T++ G + + L Q++ V + ++ ++K Sbjct: 126 SFIKNFAIIEHPKGVSEAFSKFTIAIRGDNPQQVTIWLKQFLHVVQAQTLTKILNNIKQQ 185 Query: 171 IALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLF 230 ++ NLQ + A+ ++ RI Q++E ++ A A+ + + + + Sbjct: 186 NSVLVYNLQQQIDRARETAKVERHDRITQLKETMRIAQLARQNEDDLFDSALNTKYPPNP 245 Query: 231 LLGSEALESMIKHEATR--PLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPI 288 L L + IK+ + R F P + L +SL V+ + + P Sbjct: 246 AL----LRAEIKNLSARKSDDAFIPKLRTLQAELDFYKSLAVNRNQVAVFHLDGAIETPN 301 Query: 289 RRDSPKKAITLI 300 SPKK + ++ Sbjct: 302 TPISPKKRLIMM 313 >UniRef50_C0QSZ0 Chain length determinant protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QSZ0_PERMH Length = 288 Score = 103 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 40/315 (12%), Positives = 101/315 (32%), Gaps = 54/315 (17%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD-VGQIA 71 ++ ++IDL +L + L + ++ + I L+ YL + K + + I+ P + Sbjct: 22 YEEDEIDLYELWLTLKKRYKLVLSVTVFFILLSAVYLFLTKPVYRAEFIVKLPQGLTSPQ 81 Query: 72 GYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLP 131 N ++ + K L+G + ++ + K Sbjct: 82 ETKNIIDNLENLRKEKRYMELSNLLGISQEKIMDIDSFSASEIRKNK-----------NL 130 Query: 132 LTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQE 191 + V ++ +++ + +K+ I + ++ L+ S+ +E Sbjct: 131 IKVILDVYDPNIISKLSVSILEHLNN------NRFVKERIEIRKETLRFSIEETNEKIKE 184 Query: 192 QKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVF 251 + ++ R + + +I+ G + +L + Sbjct: 185 IESIKDRILN---------DLKNGRIKDLGFNPVDMDRTVLSLK---------------- 219 Query: 252 SPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGA 311 L + Y + P++P + PKKA+ L +A + G +G Sbjct: 220 -EKVKNLENQLKLLRG----------YEIAVDPVVPEKPSKPKKALILAVASVSGLFLGV 268 Query: 312 GIVLGRNALRNYNAK 326 + + N + Sbjct: 269 FLAFFAEWIENARKR 283 >UniRef50_Q2T3S0 Chain length determinant protein domain protein n=19 Tax=pseudomallei group RepID=Q2T3S0_BURTA Length = 405 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 44/354 (12%), Positives = 107/354 (30%), Gaps = 54/354 (15%) Query: 22 DLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG------QIAGYNN 75 D+L+ L GK I V A+ L I V + + ++ PD + + Sbjct: 28 DVLIALGHGKGLIARIVAAAVLLGIALALVLPPIYEARTVLLPPDESRGLFGHSLGSLDV 87 Query: 76 AMNVIYG----------QAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV 125 G A K + ++++LI +F +T+ + + + ++ Sbjct: 88 IAGAAMGIDFKTPGELYVALLKSTSIEDSLIRQFGLRKRYRVDTMHAARKALQSRVSVTL 147 Query: 126 KNQQLPLTVSYVGQTAEGAQMKLAQ-------YIQQVDDKVNQELEKDLKDNIALGRKNL 178 + LT++ A ++++ Q+ L+ + R L Sbjct: 148 DKKSGLLTIAADDTDPAVAADLANAHVAALAKLLERIAVTQAQQRRAFLEKEVDKSRVAL 207 Query: 179 QDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQ----------TGEDITQDT 228 ++ + + + + L + A++ + + Q Sbjct: 208 ANAQDAYVKLQAKSGVVSV-DADTQLAIRHSAEIRSLLAAKQIELSSIGTYATAENPQVK 266 Query: 229 LFLLGSEALESMIKHEAT-------------------RPLVFSPNYYQTRQNLLDIESLK 269 L++ ++ R + + N L++ + Sbjct: 267 RIEAEVSTLKAQLEKIENGDAASLRGSDAGMATLRSYREMKYQENVVDVLSRQLELARVD 326 Query: 270 VDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 + + V P R+ P + + L+ + G ++ +V+GR R Sbjct: 327 -EAKSGPLVQQVDVAAPPERKAKPSRLLILLASFAGGFVLAVTVVIGREFGRQA 379 >UniRef50_Q21Z35 Lipopolysaccharide biosynthesis n=1 Tax=Rhodoferax ferrireducens T118 RepID=Q21Z35_RHOFD Length = 388 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 40/355 (11%), Positives = 93/355 (26%), Gaps = 46/355 (12%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 + ++I L+DLL + ++++ + A LA+G +T+T P Q A Sbjct: 10 EDDEISLLDLLQVVADNLRLLVLAPLTAGLLALGISFAIAPTFTATTKFMPPQQQQSAAA 69 Query: 74 NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSA----------------LAETLDNQEERE 117 + ++ + + ++ + + L Sbjct: 70 SMLSSLGALGGLAGAATGLKNPADQYVAFLKSRSVQDVLIDRFKLMERYESKLKTDARTT 129 Query: 118 KLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYI-------QQVDDKVNQELEKDLKDN 170 + + +T+ + A Y+ ++ Q+ + Sbjct: 130 LEGVSKIASGKDGLITIDVDDKDPAFAAQLANAYVEELGRLLDRLAVTEAQQRRVFFEKQ 189 Query: 171 IALGRKNLQDSLRTQEVV------AQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDI 224 + + NL + + + + Q Q E Sbjct: 190 LTNAKDNLIKAEQALGASGVNSSVLKSTGAAVEAVARLRAQITGQEVKLASMRGYLTESA 249 Query: 225 TQDTLFLLGSEALESMIKHEAT----------------RPLVFSPNYYQTRQNLLDIESL 268 AL + R + ++ ++ + Sbjct: 250 PDFKQAQTELSALRGQLARAEQSEPATDSASSDYIAKFRDFKYYETLFELFAKQYEMARI 309 Query: 269 KVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 + + + + P R+ PKKA+ ++ L G V R ALR Sbjct: 310 D-ESREGAVIQVLDAAQPPERKSKPKKALIALMTTLAVGFALLLFVFIRQALRGA 363 >UniRef50_C8X034 Lipopolysaccharide biosynthesis protein n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X034_DESRD Length = 296 Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats. Identities = 35/322 (10%), Positives = 91/322 (28%), Gaps = 66/322 (20%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYL-AVAKEKWTSTAIITQPDVGQI 70 ++IDL++L + LWR K + I+A A + + +TA I + + Sbjct: 25 PQADDEIDLVELWLILWRRKWLVAGVTILATLAATFITVFGIQPAYKATATIRAVETEEF 84 Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRF-----SSAFSALAETLDNQEEREKLTI-EPS 124 + + +V+ + Q +L+ + + +D + L Sbjct: 85 SNKDFLESVLTSNIFKRKVIEQNSLLPHYFPEKWNPQEGTWRSGVDIPTSTQVLASGRFP 144 Query: 125 VKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRT 184 +K Q +S A+ ++ + +++ + T Sbjct: 145 LKIQTSGHEISLTWTDADP----------HFAANQLEKTLDVFRSHLSQATPAETKQIAT 194 Query: 185 QEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHE 244 + Q +++I+ A + + + + Sbjct: 195 IDTHIQ-----SLQEIKGATEAPEELNIELASL--------------------------- 222 Query: 245 ATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVL 304 + L+ ++ + +P+ P P+ + L L + Sbjct: 223 -----------------IRKKAELESQRDLYQSFTLINEPLPPSSPTKPRTQLILALTLA 265 Query: 305 LGGMVGAGIVLGRNALRNYNAK 326 G + ++N + Sbjct: 266 TSLFAGVFLAFLLEFIKNARQR 287 >UniRef50_D1B3W3 Lipopolysaccharide biosynthesis protein n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B3W3_SULD5 Length = 297 Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats. Identities = 43/316 (13%), Positives = 96/316 (30%), Gaps = 26/316 (8%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 Q ++IDL +L + R K I++ + A Y + + AI+ Sbjct: 7 QMPHEDEIDLRELFRTIIRYKKFIVVITVCVTLFAAVYSVLKTPIYEVKAILEIGFFT-- 64 Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQL 130 N + E+ + +E L+ +K Sbjct: 65 --NTNTNTNTNTNTNTNTNTFLESPANLIQRLELNYIDNQKGSKETSFLSKALLIKGTNN 122 Query: 131 PLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQ 190 + + Q+ E KL + +V K + +E LK +++ Q+ Sbjct: 123 LVELVIEAQSNEEGLKKLNAIVDEVKLKHQKVIEAYLKQM-----HIKISNIQAQKEELS 177 Query: 191 EQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLV 250 +K+ I +Q P + + +++ Sbjct: 178 LEKEKLSNFISNKTLMVDQILKDNPAVAAIYSI----------------ELNNKSLELTE 221 Query: 251 FSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVG 310 Y L D+E L + ++ ++ + PKKA+ ++++ + G ++ Sbjct: 222 LKNKIYTLNNQLSDLE-LLIAPSNVKETSFLGNITKSDKPVKPKKALIVLVSSITGFILS 280 Query: 311 AGIVLGRNALRNYNAK 326 +V R+ + Sbjct: 281 IFMVFLFEMFRSPKNE 296 >UniRef50_B8D183 Lipopolysaccharide biosynthesis protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D183_HALOH Length = 278 Score = 101 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 43/305 (14%), Positives = 95/305 (31%), Gaps = 43/305 (14%) Query: 18 IDLIDLLVQLWRGKMTIIISV-IVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNA 76 IDL + + LW G+ +I + I + + + + + + A+I I + Sbjct: 15 IDLREYIKVLWAGRWLVISLMGIAILLVGLASYFLINPVYETEAVIRLTSTDGIYSRPAS 74 Query: 77 MNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSY 136 M + + ++ S A I+ + + L + Sbjct: 75 MARLIKSPSLLKGVMEGVNREYTMSELHTFASN----------NIKVNHVRETSMLEIKV 124 Query: 137 VGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLR 196 A L I K ++ +K + + LQ + + + Q + Sbjct: 125 SHTEPRLAFDILEGLI----VKAQEKSDKYYRKVVNHKETYLQGIITELDEINQRIGSV- 179 Query: 197 IRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYY 256 ++ E + L + L + + + L + Sbjct: 180 ---------------------EEGIEKLNNRDLPAVEKYVLLNSLDNNLDSLLTYKRGL- 217 Query: 257 QTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLG 316 + D L+ + L + + P +P SP + +++A +LG M+G IV Sbjct: 218 -----VKDKNRLERELLTLRPLEVISSPYVPENPVSPNIKLNVVIAGILGLMMGVFIVFF 272 Query: 317 RNALR 321 R ++ Sbjct: 273 REFMK 277 >UniRef50_C8PNG3 Chain length determinant protein n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PNG3_9SPIO Length = 337 Score = 100 bits (248), Expect = 7e-20, Method: Composition-based stats. Identities = 47/346 (13%), Positives = 94/346 (27%), Gaps = 63/346 (18%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLA----------VAKEKWT 57 + + E+I L+DL LWR K II ++ Y + +T Sbjct: 1 MDDIKTESEEISLLDLAAVLWRWKQLIIGVTVLLSIAVFVYTFIGKKMDPEKSFMPDVYT 60 Query: 58 STAIITQPDVGQI---------AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAE 108 STA + A + I +S +A+ Sbjct: 61 STAFMRIQSGNSSASGALSSLLQQSGLGGLTGGIGAGGNTTQQLAFYIANSNSFLDTIAD 120 Query: 109 TLDNQEERE-------------KLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQV 155 L E+ + K I+ + + +++ AQ + Sbjct: 121 ELHISEKYKIKKFIKTESRTIVKGLIKAKMDEKSGVFSLAATHIDPVFAQKAALLAVDYY 180 Query: 156 DDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKP 215 + + + K+L+ S + + QE DL + A + Sbjct: 181 EKRFAELGLDTKVQEKQNLEKSLEQSFNEIKRLEQEAGDLE-------NKIAQSGGIKGA 233 Query: 216 QIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDI 275 + + V Y Q + ++ + Sbjct: 234 ALAM----------------------EQIKREISVQERVYGQLKAQYELLKVEMASE--T 269 Query: 276 HAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 ++ + P +P ++ P +A I+A G + NAL+ Sbjct: 270 PVFQILDMPEIPEKKSGPSRAKICIIAFGAGLFFSIFLAFLLNALQ 315 >UniRef50_C6NU30 Lipopolysaccharide biosynthesis n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NU30_9GAMM Length = 276 Score = 100 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 111/313 (35%), Gaps = 59/313 (18%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 ++I L +L +LWRGK ++ S +V +ALA YLA + + S AI+ Sbjct: 18 PPPEDEISLWELWERLWRGKWLVVGSSVVFLALAGLYLATSTTIYQSKAIV--------- 68 Query: 72 GYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLP 131 + ++ GQ S L + + + T++ +++ ++ K+ Sbjct: 69 ----QVGMVAGQPLANTSLLAQKVYNNYRPV-----NTIEAKKQLPRIHSASVEKSDANL 119 Query: 132 LTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQE 191 L + G++ E AQ L +Q + + + LK K LQ R E + Sbjct: 120 LELESYGRSPEEAQSYLHSIVQSLLSREQDRYAQTLK-FHQTQLKELQRQYRALETSSPS 178 Query: 192 QKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVF 251 + AL Q ++ + +L I + Sbjct: 179 DTRHTKHREPSALLLLEQ------------------SMRFSEASSLLQQIANAEN----- 215 Query: 252 SPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGA 311 ++ + V +P SPKK + LILA+ G VG Sbjct: 216 -----------------QLSPANTRPPEVVRQPSYDPVAVSPKKLVVLILALFGGLFVGI 258 Query: 312 GIVLGRNALRNYN 324 +VL R++ ++ + Sbjct: 259 LVVLLRSSRKSND 271 >UniRef50_C5BSK8 Chain length determinant protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BSK8_TERTT Length = 293 Score = 100 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 35/309 (11%), Positives = 82/309 (26%), Gaps = 24/309 (7%) Query: 21 IDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVI 80 I L LW GK ++ + I + + + S + N + Sbjct: 2 IKLWESLWSGKFWLLGITALFILCGVLFSLSLPNMYESKGVY--GISQDDGVAKNMSGQL 59 Query: 81 YGQAAPKVSDLQETLIGRFS------SAFSALAETLDNQEEREKLTIEPSVKNQQLPLTV 134 G AA +L + + ++ E + + + + Sbjct: 60 GGLAAIAGINLGAGGQNKINHAVVLGQSWPFWDELIRTHNLKPLVFGVKEWDRARDKFVW 119 Query: 135 SYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKD 194 + + + + + E+ + D + + L Sbjct: 120 DEDIYLVDEQKWIRKPPSGKEAEPSSYEVFDKIIDFVEIKFDASTGLLS----------- 168 Query: 195 LRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPN 254 I+ + A + + L+ I E + + Sbjct: 169 --IKVKHYSPHVAKEWVEMIVEKLNGDFRDRDIVKAEKNIGYLQEKID-ETKIAELKTVF 225 Query: 255 YYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIV 314 Y + +VD+ + V+ PM+ SP + + ++L ++GGM + Sbjct: 226 YNMVEAQTKTLMLARVDED--YLVEPVIMPMVAESPVSPVRKLIVVLFAVVGGMFSLLFL 283 Query: 315 LGRNALRNY 323 +N Sbjct: 284 FVKNIFSKR 292 >UniRef50_Q1NTS5 Lipopolysaccharide biosynthesis n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NTS5_9DELT Length = 260 Score = 99.6 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 43/324 (13%), Positives = 93/324 (28%), Gaps = 65/324 (20%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 ++ N + ++I L+DL L R K+ I + + A YL + + S A+I Sbjct: 1 MQPQNTQPAPYYDDEISLLDLWRTLARRKLIIAVVSAAVMLAAGAYLLLTTPLYESRAVI 60 Query: 63 TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIE 122 + G L + E I+ Sbjct: 61 QVGSMAGETG-----------------------------ELIEDPNILRERLTAEHPAID 91 Query: 123 PSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSL 182 +++ +T++ + A+ +L + Q+ + + + ++ K ++ ++ Q + Sbjct: 92 SVGVSRRSIVTITLQDASPAEAEQRLQAIVDQLFAE-HNAVYENSKHHLEQRQRLQQQRI 150 Query: 183 RTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIK 242 + + + + + A + Sbjct: 151 NELKAQ-KSELGQFVESWKNKEPTAAAILI------------------------------ 179 Query: 243 HEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILA 302 E P Q L S + D + + R +PK + L LA Sbjct: 180 MEVGNIARMLPKLEQDLAALEQAPS-EADADRTRLFGKLQTG---ERPVAPKTGLVLALA 235 Query: 303 VLLGGMVGAGIVLGRNALRNYNAK 326 +LG M+G L + Sbjct: 236 AVLGLMLGIFTAFFAEFLAKAREE 259 >UniRef50_B5ZNF2 Lipopolysaccharide biosynthesis protein n=8 Tax=Rhizobium RepID=B5ZNF2_RHILW Length = 588 Score = 99.6 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 49/330 (14%), Positives = 104/330 (31%), Gaps = 31/330 (9%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN 74 + L D+L L + I+ + + +A YL A + ++ Q+ + Sbjct: 24 NSPLTLRDMLFFLKMRWLWILATTFAFLVIAGSYLLTAAPTYVAST--------QLVIFP 75 Query: 75 NAMNVIYGQAAPKVSDLQETL-IGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLT 133 + +A + + ++ L I R S LD + + + +PS+ ++ Sbjct: 76 QVNSSEAQRAFAEDAFIEGQLEIARSSDVVDGTVRALDLDSDPDFVDWKPSLLDKSKDWL 135 Query: 134 V--SYVGQTAEGAQMKLAQYIQQVDDKVNQELEK----DLKDNIALGRKNLQDSLRTQEV 187 + S T + A A ++L L++ +AL R + Sbjct: 136 LGVSAQVDTGQEAAGMRASDTPSRPRTEQEQLHDLAIATLQNMMALRRIGNSTIIEISAA 195 Query: 188 VAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDIT-----QDTLFLLGSEALES--- 239 + QK + I + +Q + + Q S AL + Sbjct: 196 ASTPQKAVAIADTLARQYIQKNIAMKADSSRQYSDWLEKFVREQQRGLADASSALNTFNS 255 Query: 240 ------MIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSP 293 + + Y T L + + + + + LP+ + P Sbjct: 256 NPRDQFKLAELQSATDARRTLYESTLTQLTEAKQRIT--YPVSDATIISRATLPLSKARP 313 Query: 294 KKAITLILAVLLGGMVGAGIVLGRNALRNY 323 + + L A +G VG + + R+A Sbjct: 314 RSTLILAFAGAVGLGVGLALAMVRHAGDRR 343 >UniRef50_C9MSS5 Chain length determinant protein n=2 Tax=Prevotella RepID=C9MSS5_9BACT Length = 355 Score = 99.6 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/345 (11%), Positives = 102/345 (29%), Gaps = 46/345 (13%) Query: 14 DPEQ---IDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ------ 64 + ++ ID + +W+ KM + + I A Y+ ++S+ I Sbjct: 3 NQDEYKGIDYTAVFHAIWKKKMVYLTVLSFTILFASLYIFSLPRTYSSSTEIAPEVDSKT 62 Query: 65 PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSS------AFSALAETLDN------ 112 P G + + + + +T D+ Sbjct: 63 PGGGTLGSLASTFGIDMSTLESSDAITPMLYPDLIDDNGFISMLLPIHVQTGDSTFKGTY 122 Query: 113 QEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQ-MKLAQYIQQVDDKVNQELEKDLKDNI 171 + + T P L + E + + K++ + + ++ I Sbjct: 123 YDYKRTATKVPWWNKLANDLLTKISSKKPEEGKYEVGTPFNAYHLTKLDNSIIESIRKQI 182 Query: 172 ALGRKNLQDSLRTQEVVA---------------------QEQKDLRIRQIQEALQYANQA 210 A+ ++ + + D R ++ + ++A Sbjct: 183 AIKVDKKTGAITINTEDQDPLIAKTIADSTRELLKDFITKYRTDKARRDVEYYKKLTDEA 242 Query: 211 QVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKV 270 + + + + + + +++S + + NY Q + L + K+ Sbjct: 243 KSSYEHQRLKYGEFSDSNT-DVSLPSVQSKGEDMENEMQLRYNNYSQLKGQL-QLSLAKL 300 Query: 271 DDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVL 315 + + + +PI+ PK+ + L+ VL ++ VL Sbjct: 301 RE-RTPVFTQIKGAAVPIKPTGPKRMLFLLGTVLFSFILTTIYVL 344 >UniRef50_B8KUX8 Chain length determinant protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KUX8_9GAMM Length = 351 Score = 97.7 bits (241), Expect = 4e-19, Method: Composition-based stats. Identities = 60/338 (17%), Positives = 107/338 (31%), Gaps = 52/338 (15%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGY-LAVAKEKWTSTAIITQPDVGQI 70 + ++IDL +L+ LWR + I+ + A GY +A + A I + Sbjct: 37 DARDDEIDLFELIAGLWRRRFLIVALTAAFVIAAAGYVTLIATPTFVVEARIRPATEQAL 96 Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIG-----------------------RFSSAFSALA 107 G N A + G AA E + + Sbjct: 97 IGLNKARSFSVGPAAALAQFSAEFQSRSVLQSAFDAVMSSNPGTVAWTGEEMPPSLTREQ 156 Query: 108 ETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDL 167 L+ R + E + +S+ Q AE + L IQ+ + Sbjct: 157 LFLEGFLPRINIEEETVPSGNESIRLLSFEAQNAEAGRDTLDAIIQRAKAAATTAITNSF 216 Query: 168 KDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQD 227 N+ L N+ R E + + D R + A + A +TG+ I Sbjct: 217 TANLDL---NISQRKRELERILAQIADGRTDMTRIATEVAQS---------ETGQGIAVA 264 Query: 228 TLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLP 287 + ++ + ++ E L ++ + +D+L R P+ P Sbjct: 265 DSSGVRYTSVSAQLQAEI--------------AQLEVLQKIPLDNL--QVIRIDQPPIAP 308 Query: 288 IRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 R PKK + + A + G + + L NA A Sbjct: 309 TRPVKPKKTLIVAAAGVAGALFSLLVALVLNARDARRA 346 >UniRef50_Q0YTR7 Lipopolysaccharide biosynthesis n=1 Tax=Chlorobium ferrooxidans DSM 13031 RepID=Q0YTR7_9CHLB Length = 394 Score = 97.7 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 46/375 (12%), Positives = 105/375 (28%), Gaps = 53/375 (14%) Query: 1 MRVENNNVSGQNHDPE-QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTST 59 M + +N E +I+L+D+ + L + I+ +V +A + +T+ Sbjct: 1 MDNNIQSSEQKNTGKEFEINLLDVAIVLAKYIKLIVALPLVCAIIASVVTIQSPNIYTAD 60 Query: 60 AIITQPDVGQIAGYNNAM--------------------NVIYGQAAPKVSDLQETLIGRF 99 P + A K +Q+ +I RF Sbjct: 61 TTFMPPKQESSVSSMVSSLSSLGSLSGMLGSGGGALAGTNDIYVAVLKSRKMQDDMIRRF 120 Query: 100 SSAFSALAETLDNQEEREKLTIEPSVKNQQLPLT-VSYVGQTAEGAQMKLAQYIQQVDDK 158 + +T + R L + SV + L + + A + Y+ + + Sbjct: 121 R--LFDIYKTNSAENARRALAAQTSVMAGKDGLIHLYVTDTNPKRAALLANGYVDVMLQQ 178 Query: 159 VNQELEKDLKDNIALGRKNLQDSLRTQE--VVAQEQKDLRIRQIQEALQYANQAQVTKPQ 216 N+ + K D+ + ++ + I Q A + K Sbjct: 179 NNEFALTEAARRRQDAEKEFLDAKNRLSDAESSVKELQEKTGLITVGPQIAALQTMIKST 238 Query: 217 IQQTGEDITQDTLFLLGSEALESMIKHEAT--------------------------RPLV 250 +Q E T + R L Sbjct: 239 ERQLAEMSVYSTPNNPDYIKTRQKLNDLQNEIGKAQTGSGYISKAPEKILEFTRKTRDLK 298 Query: 251 FSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVG 310 ++ YQ L + + + + + V + ++P + P ++ ++++ + V Sbjct: 299 YAEALYQLALQQLTLARID-ESKSASSIKIVDRAVVPEEKSGPFRSRSVMIVAIAALFVA 357 Query: 311 AGIVLGRNALRNYNA 325 + A + Sbjct: 358 VIVAFVLEAYQRAKG 372 >UniRef50_D0YWK9 O-antigen chain length determinant protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YWK9_LISDA Length = 352 Score = 96.6 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 62/354 (17%), Positives = 132/354 (37%), Gaps = 38/354 (10%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 ++ + Q++L+++ LW K+ IIIS I+ I LA+ + + W S+A IT+P Sbjct: 2 SSDEQSIYQDNQLNLLNIFRVLWTRKLIIIISTIIGIVLALIVSIYSAQWWESSAEITKP 61 Query: 66 DVGQIAGY-NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTI--- 121 A + ++A + G + + ++S + L + + ++ I Sbjct: 62 QYSDYAVFISSADQLTTGSNPSESLKSIINIEKNYNSFINILTSKTNKIDFLQQSNIIKS 121 Query: 122 ---------------------------EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQ 154 + S+ + V T + + L YI+ Sbjct: 122 YFIRDGVKTDIQKDKALDLWAEKIIVKKESLILNKSSYIVIAQANTLDDSFKLLNNYIKF 181 Query: 155 VDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTK 214 +K N ++ L+ + NL+ L + K L+ ++ Q AL A ++ + Sbjct: 182 TKNKYNSDVLLSLETFKRIELLNLKKQLDYNISYTLDIKKLKEQKAQLALNIAEESGIES 241 Query: 215 PQIQQTGEDITQDTLFLLGSEALESMIKHEA--TRPLVFSPNYYQTRQNLLDIESLKVDD 272 P + LG++AL + + +F+ L + ++K+ + Sbjct: 242 PL--NNYFEKGSSFNIALGAKALRAEKNVISSLKDLAIFNDKITLLSSQLNYLNNVKLSN 299 Query: 273 LDIHA-YRYVMKPMLPIRRDSP-KKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 L+ +A + Y+ + +P KK L+ ++L + G I L + Sbjct: 300 LENNAFFSYIQTEHKNPNKIAPSKKTFILVFSLLFACI-GIVIALVIEIFSKKD 352 >UniRef50_A6TJR1 Lipopolysaccharide biosynthesis protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TJR1_ALKMQ Length = 398 Score = 95.4 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 40/385 (10%), Positives = 105/385 (27%), Gaps = 79/385 (20%) Query: 16 EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVA-KEKWTSTAIITQPDVGQIAGYN 74 E+I L +L+ L + K II ++A+ + + + + ++ + + N Sbjct: 2 EEISLRELIETLLKQKKLIIGITMIAVLTTGLFSFFMLEPVYETRMVLMASNFTERLQPN 61 Query: 75 NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAET--------LDNQEEREKLTIEPSVK 126 +S + + +A L+ + E+L S++ Sbjct: 62 QLSGNGVEGMLESLSQYPAMTLDTYRQQVTAPRVMRATIEELGLEEDYDVERLARAISLE 121 Query: 127 N--QQLPLTVSYVGQTAEGAQMKLA-------QYIQQVDDKVNQELEKDLKDNIALGRKN 177 +T+ E A + + +++ + + + + + + + Sbjct: 122 TLQNTNLITIKMQHGDPEKAALIVNTVGEKFVEFVSEKAQEHASQSSQYVVSQMEVEEAQ 181 Query: 178 LQDSLRTQEVVAQE--------------------------QKDLRIRQIQEALQYANQAQ 211 L D+L + ++R +Q A+Q A Sbjct: 182 LDDALVELREFLSQPRGVSELQMELDARLSQATSFKTQLTDLEIREPALQSAIQVAQAEG 241 Query: 212 VTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTR------------ 259 T QI +Q L+ + + F + + Sbjct: 242 NTNSQIMINDNAGSQQITLESTETLLKIELAEVQSNIQSFRTQITEIQDEIEELQVELQD 301 Query: 260 -----------------------QNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKA 296 + ++ + + + + + P+K Sbjct: 302 KKHQERLINQRVNIAENNYDAFVKKYEELRVAESSQIGDASITVISRAFPTTTPIGPRKT 361 Query: 297 ITLILAVLLGGMVGAGIVLGRNALR 321 + + +A +LG M+G + Sbjct: 362 LNVAIAGVLGVMIGVFAAFFIEYWK 386 >UniRef50_C2M1S4 Putative uncharacterized protein n=1 Tax=Capnocytophaga gingivalis ATCC 33624 RepID=C2M1S4_CAPGI Length = 370 Score = 95.4 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 52/366 (14%), Positives = 131/366 (35%), Gaps = 50/366 (13%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT---- 63 +S ++IDL+ LL ++ +GK TI +V + + +K+++T+T+++ Sbjct: 1 MSQDIQKDDEIDLLALLQKIVQGKKTIFKCFLVFFVIGVFIAIFSKKEYTATSLVLAQEN 60 Query: 64 -QPDVGQIAGYNNAMNVIYGQAAPKVSD-----------------------LQETLIGRF 99 G ++G + + + + +Q++ Sbjct: 61 NAAAGGSLSGLASLAGINLSSGSSDLISPKLYTSIAQSIPFLRKMIQARIKVQQSNTPIT 120 Query: 100 SSAFSALAETLDNQEEREKLTI-EPSVKNQQLPLTVSYVGQTAEGAQMKLAQY------- 151 + + + + +K TI PS+ ++ + Q + L Y Sbjct: 121 YQEYYQKYDKGNFLDVIQKYTIGLPSLIVDKVTPSEENTPQYTTSEKDTLEVYPLTHEEK 180 Query: 152 -----------IQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQI 200 I D L ++D +A + Q QE + + + +Q+ Sbjct: 181 GLFGLLKSQLKITNNDKDNTVSLSFSMEDPVAAAQMLEQAKNYLQETIIEFKTRKAKKQL 240 Query: 201 QEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQ 260 + + +A+ + + Q L+ + + + ++ L + N Y Sbjct: 241 EFIQKQYEEAEKSFKEKQIRLAAFQDSNRGLITAVPMTRQSQLQSDYNLAY--NLYVELA 298 Query: 261 NLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 + + +KV + D A+ + +P+ + PKK + + + LG ++G G + ++ + Sbjct: 299 KQYENQKIKVQE-DTPAFITIEPVSIPLEKSKPKKGMIIAIWSFLGIVIGIGTIFAKDFM 357 Query: 321 RNYNAK 326 + + Sbjct: 358 KAMKNR 363 >UniRef50_B5YEW0 Lipopolysaccharide biosynthesis n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YEW0_DICT6 Length = 462 Score = 95.0 bits (234), Expect = 3e-18, Method: Composition-based stats. Identities = 37/301 (12%), Positives = 110/301 (36%), Gaps = 22/301 (7%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV 67 ++ + ++I L +L +W+ ++ +II I+++ +A+ Y +A + + + +I P Sbjct: 1 MNEEKMYEDEISLAELFYIIWKRRVLVIILFIISVLIALVYSLLAPKIYEAKTVILIPQQ 60 Query: 68 GQIAG-----YNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKL--- 119 + N I ++ +++ L R ++ + LD+ + + Sbjct: 61 SGTSSTLSALLQNLPIPIGITSSTPSANMVAILKSRSAAEYVFKKLKLDDYFKAKTYEDA 120 Query: 120 ------TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDK-------VNQELEKD 166 +I+ + ++ +T++ + + A Y++ + + ++ Sbjct: 121 LKQLMDSIKVTTNEKENTITITAEAKDPKLAADIANTYVEALSTINASLGVYTAKRTKEF 180 Query: 167 LKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQ 226 L+ I +K+L + + ++ I +A+ A ++ Q+ +++ Sbjct: 181 LEKQIERVKKDLDQAENKLKEFQEKNLIFSIDDEAKAIVDALAKLESEKQMTAITLKVSK 240 Query: 227 DTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPML 286 D L + L + + + L + + L + ++ P Sbjct: 241 DNFENL-KKELVNQQRIQQKDLLAITSLTATSTVLSDLRNKLISQESELALLSIDYGPEH 299 Query: 287 P 287 P Sbjct: 300 P 300 Score = 58.8 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 32/253 (12%), Positives = 80/253 (31%), Gaps = 18/253 (7%) Query: 83 QAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAE 142 A + D L L + DN E +K + Q+ L ++ + T+ Sbjct: 213 DEAKAIVDALAKLESEKQMTAITLKVSKDNFENLKKELVNQQRIQQKDLLAITSLTATST 272 Query: 143 GAQMKLAQYIQQVDDKVNQELE--------KDLKDNIALGRKNLQDSLRTQEVVAQEQKD 194 + I Q + ++ +K I +K +++ L Sbjct: 273 VLSDLRNKLISQESELALLSIDYGPEHPKVVSMKYAIEETKKVIREELDRVYKAINNSSL 332 Query: 195 LRIRQIQEALQYAN-QAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSP 253 + +Q ++ + + I Q +++ L L +K + T + Sbjct: 333 YDLFNLQMSILVNESKLKALSDVIDQYQSKLSKLPELGLTLSKLLRDVKVQETIYTMLLS 392 Query: 254 NYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGI 313 Y Q + + ++ + + P+++ P + +++A + +G + Sbjct: 393 QYEQAKI---------DETKEVAVVSVLDPAVPPLKKSKPSTVLNVLIAGVSSVFLGVFL 443 Query: 314 VLGRNALRNYNAK 326 N N+ + Sbjct: 444 AFFLNFWENFKKE 456 >UniRef50_C9LJ77 Chain length determinant protein n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LJ77_9BACT Length = 353 Score = 95.0 bits (234), Expect = 3e-18, Method: Composition-based stats. Identities = 41/338 (12%), Positives = 107/338 (31%), Gaps = 39/338 (11%) Query: 19 DLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMN 78 L+ + L I I + ++L+IGY+ + S ++ + + + Sbjct: 7 SLLKVARLLLSKWKQIFIFCFIVVSLSIGYIMSIPRSYQSDVVMLPEIPSNSSLSSGLGS 66 Query: 79 VIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVG 138 + + E I + + + +T D + P Q + L + Sbjct: 67 LASMAGVKLGNGDSEDAI--YPEFYPKVVKTPDFLVALLNKPVRPKGLKQDVSLFIYLTQ 124 Query: 139 QTAEGAQMKLAQY-----------------IQQVDDKVNQELEKDLKDNIALGRKNLQDS 181 L Q+ + + +K+ + L + + + + Sbjct: 125 HQKAPWWDSLFQWGGLGSKETPTNKIDPQRLTKAQEKLLKGLGASIVSFVDKRTNMVTIN 184 Query: 182 LRTQEVVAQEQKDLRIRQI-----------------QEALQYANQAQVTKPQIQQTGEDI 224 + Q+ Q + + A + + +A + + Q Sbjct: 185 VTMQDPEVAAQVATMVENQLQQYIANYRTSKARNDVKYAEKISQKA-LEDYKAAQKVYAR 243 Query: 225 TQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKP 284 D L +++ + Y Q+ L + KV + + A+ + + Sbjct: 244 FADANQDLVLTSVQQEETRLENEMQLAYNGYSQSVTQL-QLAQAKVQE-RMPAFTVLQQA 301 Query: 285 MLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 +PI+ +PK+ I + + +L + ++ ++A+R+ Sbjct: 302 NVPIKPSAPKRMIFVFMMAVLSFSLSCLWIIIKSAMRD 339 >UniRef50_B8E0I3 Lipopolysaccharide biosynthesis protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E0I3_DICTD Length = 463 Score = 94.2 bits (232), Expect = 5e-18, Method: Composition-based stats. Identities = 37/302 (12%), Positives = 106/302 (35%), Gaps = 23/302 (7%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV 67 ++ + ++I L +L +W+ K+ II IV I +A+ Y +A + + + +I P Sbjct: 1 MNEERIYEDEISLAELFYIIWKRKILIITLFIVFITVALIYSLLAPKIYEAKTVILLPQQ 60 Query: 68 GQ----IAGYNNAMNVIYGQAAPKVSDLQETLI-----------GRFSSAFSALAETLDN 112 ++ ++ + G I + A+ ++ Sbjct: 61 SGSTSALSALAQSLPISLGIPLSSTPSANMVAILKSRSAAEYVFKKLKLEGYFKAKNYED 120 Query: 113 QEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDK-------VNQELEK 165 E+ +I+ + +++ +T++ + + A Y++ + + + ++ Sbjct: 121 ALEQLMKSIKVTTNDKENTITLTAEAKDPKLAADIANTYVEALSNINASLGVYTAKRTKE 180 Query: 166 DLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDIT 225 L+ I +K+L+ + + ++ + +A+ A ++ Q+ + Sbjct: 181 FLEKQIERVKKDLEQAENRLKEFQEKNLIFDVNDEAKAVVDALAKLESEKQMTSITLKVE 240 Query: 226 QDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPM 285 ++ L AL + + + L + + L + ++ P Sbjct: 241 KENFENL-KRALINQQRIQQKDLLAITSLTATSTVLSDLRNKLISQESELALLSVDYGPE 299 Query: 286 LP 287 P Sbjct: 300 HP 301 Score = 55.7 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 28/247 (11%), Positives = 73/247 (29%), Gaps = 4/247 (1%) Query: 82 GQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTA 141 A V D L L +N E ++ I Q+ L ++ + T+ Sbjct: 213 NDEAKAVVDALAKLESEKQMTSITLKVEKENFENLKRALINQQRIQQKDLLAITSLTATS 272 Query: 142 EGAQMKLAQYIQQVDDKV--NQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQ 199 + I Q + + + + I++ + ++ + + K + Sbjct: 273 TVLSDLRNKLISQESELALLSVDYGPEHPKVISMKYAIEETKRVIRDELDRIYKAINNSS 332 Query: 200 IQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTR 259 + E V + +++ + I + L L + V Y Sbjct: 333 LYELFSLQMDIFVNESKLKALSDVIDEYQKRLSNLPELGLTLSKLLRDVKVQETIYTMLL 392 Query: 260 QNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 + + + + + P ++ P + +++A + +G + N Sbjct: 393 SQYEQAKIDETKE--TAVVSVLDPAVPPSKKSKPSTVLNVLIAGVSSIFLGIFLAFFLNF 450 Query: 320 LRNYNAK 326 N+ + Sbjct: 451 WENFKRE 457 >UniRef50_C6JIE9 Predicted protein n=2 Tax=Fusobacterium RepID=C6JIE9_FUSVA Length = 318 Score = 94.2 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 52/339 (15%), Positives = 111/339 (32%), Gaps = 46/339 (13%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTST----- 59 N + ++ ++ID+ +L+ + + K+ ++ I+ L +G + T Sbjct: 2 NQLEKREYYEEDEIDIYELVDIIIKRKILVLAIFIICSLLGLGVAFFVRSLKQDTLALKF 61 Query: 60 ----AIITQPDVGQIAGYN-NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQE 114 A + +G N +NV K D L + E N Sbjct: 62 NINYAKLENNYFFAKSGLNFTKINVDNILITNKYVDEFFKLEKLNELYLEKIKEGNRNDY 121 Query: 115 EREKLT---IEPSVKNQQLPLTVSYV-GQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDN 170 R K ++ S TVS + E + L +YI ++ +N +++ ++++ Sbjct: 122 SRSKFLNDILKVSFNRDTNSYTVSVTMKKDQELQKDILNKYITIIESLINIQVDDEIENR 181 Query: 171 ---IALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQD 227 + + ++ L E +E + + + + T P + E +T Sbjct: 182 YTFVESENRISREKLNKIENHIKEILEKEKNNLNKDTNIKEFIEYTNPILSVEREKVTSL 241 Query: 228 TLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLP 287 Y Q+ + L+ + LK DD + Sbjct: 242 ---------------------------YNQSSEMLIGLNGLKRDDEVKNIITLDSSIYEI 274 Query: 288 IRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 + K + L + +LLG ++G + NY + Sbjct: 275 ETKSKAK--MILAVGILLGIVLGIMSAFIAEFIDNYKKR 311 >UniRef50_Q5LEP2 Conserved hypothetical membrane protein n=13 Tax=Bacteroidales RepID=Q5LEP2_BACFN Length = 370 Score = 93.9 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 53/369 (14%), Positives = 116/369 (31%), Gaps = 45/369 (12%) Query: 1 MRVENN-NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTST 59 M + N N + + ++IDLI+L ++W G+ ++ VA+ + + ++++++ Sbjct: 1 MTEDKNINKTTPQSEEQEIDLIELAQKVWAGRKLVLKVCGVAVLVGLVVAFSIPKEYSTS 60 Query: 60 AIITQPDVGQIA----GYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEE 115 + + + G AM I ++ L L S+ L E D + Sbjct: 61 VTLAPETGSKSSTGGRGALAAMAGINLGSSTGEDALSPELYPDIVSSTPFLLEMFDVKVA 120 Query: 116 REKLTIEPSVKN-------------------QQLPLTVSYVGQTAEG------------- 143 +K I ++ + L VS E Sbjct: 121 DQKGKINTTLYEYLDKYQRAPWWGAVASAPFKALGWVVSLFKDAPEEQGDAKIDPFYLTA 180 Query: 144 -AQMKLAQYIQQVDDKVNQEL-EKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQ 201 ++ V+++ L + + + + D R + + Sbjct: 181 DQAGIADALSHRISVSVDKKTGVTTLTVTMQDPLISAALTDTVMHCLQNYITDYRTNKAR 240 Query: 202 EALQYANQA---QVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQT 258 L + + Q D + ++ + + + + Q Sbjct: 241 HDLAFTEKLFNEAQENYYEAQQKYARFMDGNQNIIMQSFRTEQERLQNEMNLAYGVFTQV 300 Query: 259 RQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIV-LGR 317 Q L + KV ++ Y V +P+R P K + LI V L G+ G + + Sbjct: 301 SQQL-QLAKAKVQEIT-PVYTVVQPATVPLRPAKPNKIMILIGFVFLAGVGSIGWILFVK 358 Query: 318 NALRNYNAK 326 + L + + Sbjct: 359 DLLNGWKKQ 367 >UniRef50_C9RRK0 Capsular exopolysaccharide family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRK0_FIBSS Length = 706 Score = 92.7 bits (228), Expect = 1e-17, Method: Composition-based stats. Identities = 45/296 (15%), Positives = 112/296 (37%), Gaps = 25/296 (8%) Query: 28 WRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPK 87 + G +I + + +L A T+ A + + + + Sbjct: 182 FAGDTLVICVKSLTATVGQTFLLSAVHPQTAAAGLLK-------------GLGISEEGKN 228 Query: 88 VSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMK 147 ++ +L R++ +A+ T+ N ++ + + + + T+S++ + G + K Sbjct: 229 SGIIRVSLEDRYADRVAAILNTIANTYLKQNIEMRSAEAKK----TLSFLEEQLPGVKAK 284 Query: 148 LAQYIQQVDDKVNQELEKDLKDNIALGR-KNLQDSLRTQEVVAQEQKDLRIRQIQEALQY 206 L Q++ N + DL + K++ R E+ ++Q+ LR+ + + Sbjct: 285 LDSAEQKLTSFRNSKGTIDLTGETRVHLEKDVSLQQRLIELEQKKQEALRLFRAEHPTVR 344 Query: 207 ANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIE 266 + Q ++ + + + + L ++ E L + E L Y N+ + Sbjct: 345 TIEEQQSRLRRELAKQQRSAANLPVVQQEVLSLQEEVEVNNKL-----YTNLLNNIQQLR 399 Query: 267 SLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 ++ + + R V + +P++ P + + + V ++G IV R L N Sbjct: 400 VVQAGE--VGNVRIVDQAYVPLKPSKPNRKLVFVGVVFAFLLLGCLIVYVRRMLSN 453 Score = 53.4 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 30/296 (10%), Positives = 86/296 (29%), Gaps = 17/296 (5%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M + ++ID++++LV L + I +I+ + + + S Sbjct: 1 MNEKMTQNGSNASADDEIDILEILVYLKGKWKFLFIFLILGVVFGGLAAMWLRPSFRSDI 60 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETL---------- 110 ++ G G + + E + R E L Sbjct: 61 LLQVNVKGNKQGLALGEMGALLDVSTPSAAEMELIKSRVVLDHVVKEERLCYSAIPLDKA 120 Query: 111 ------DNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELE 164 + + + E L I + + + L ++ + L + + Sbjct: 121 DRLMHREGRMDLELLEIPRAFQEAKGKLIARVTADSSAYEVIGLEGEVVLAGAVGETYRK 180 Query: 165 KDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDI 224 D + + K+L ++ +++ + + L + + + + + Sbjct: 181 PFAGDTLVICVKSLTATVGQTFLLSAVHPQTAAAGLLKGLGISEEGKNSGIIRVSLEDRY 240 Query: 225 TQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIE-SLKVDDLDIHAYR 279 +L + A + ++ R + L ++ L + + ++R Sbjct: 241 ADRVAAILNTIANTYLKQNIEMRSAEAKKTLSFLEEQLPGVKAKLDSAEQKLTSFR 296 >UniRef50_Q1ITA8 Lipopolysaccharide biosynthesis n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ITA8_ACIBL Length = 428 Score = 92.3 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 42/366 (11%), Positives = 113/366 (30%), Gaps = 69/366 (18%) Query: 21 IDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAG-------- 72 +D L W + I+ + ++ + ++ V +++ STA I P+ G + Sbjct: 23 LDRLAIGWERRGAIVKAAVIGVIVSTTLAFVIPKQYESTARIMPPEGGMSSAIMAALASR 82 Query: 73 -------------YNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKL 119 + + + E ++ RF + + ++ Sbjct: 83 ALPGNLGAIAGSLFGFQSTSTVFVNLLQSRSVTERVVDRFDLQKVYRSRYKQDALKKLHR 142 Query: 120 TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ-------ELEKDLKDNIA 172 E + + +T++ A+ Y+ +++ V + + + + Sbjct: 143 RTEIAEDRKTGIITITVADTDRRRARDMAQTYLDELNSLVTRVNSSAAGREREFIAQRLV 202 Query: 173 LGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQA---------------------- 210 +++L D+ R V + + L +++ A+ A Sbjct: 203 TVKRDLDDAERQLSVFSTKNATLDVKEQTRAMVEATAKLEGELIIARSELSSLDQIYGPE 262 Query: 211 ------------QVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVF-----SP 253 Q+ TG + D L ++ ++ Sbjct: 263 NVRVRAGRARVGQLEHELKNATGSGVPSDITESTPYPPLRALPTLGVQWADLYRRVKLQE 322 Query: 254 NYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGI 313 ++ ++ ++ + I + + P P R+ P + + +++ LL ++G Sbjct: 323 TVFELLTQEYELARIE-EAKAIPSISVIDPPNWPERKSFPPRLVIMLVGTLLS-VLGTFF 380 Query: 314 VLGRNA 319 V+ R A Sbjct: 381 VIVRKA 386 >UniRef50_B3C5C8 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3C5C8_9BACE Length = 380 Score = 91.2 bits (224), Expect = 4e-17, Method: Composition-based stats. Identities = 37/367 (10%), Positives = 114/367 (31%), Gaps = 49/367 (13%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD 66 ++ + ++I+L++L+ ++W + I+ + + + +++T++ +I Sbjct: 11 DMRPPSSQEQEINLLELVKKVWDSRKLILRMCGIGAIVGLVIGFSTPKEYTASTLIAPES 70 Query: 67 VGQIAGYNNAMNV-IYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREK------- 118 G + +N+ ++ + + ++ + + + + Sbjct: 71 RRAYPGKSALVNMEDDNLSSSITGEKDAIFPVLYPEIINSTPFLIRLFDIKVREQKDSVS 130 Query: 119 ---------------LTIEPSVKNQQLPLTVS-YVGQTAEGAQMKLAQYIQQVDDKVNQE 162 I SV + VS + ++ E + + +E Sbjct: 131 IPLSQYLKERQKAPWWRIITSVPFKLTGWIVSLFKDESNEDSGQTGTKMGINPFRLTRKE 190 Query: 163 L--------EKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTK 214 ++ + + +++ V A +R+ + +Y Sbjct: 191 AGMAGAIASRINIGVDKKKRTITIFVTMQDPLVAATVADIVRVYLKEYITEYRTGKARKF 250 Query: 215 PQIQQTGEDITQDTLFLLGSEA--------------LESMIKHEATRPLVFSPNYYQTRQ 260 + + Q+ + + + + + Y QT+ Sbjct: 251 LKYTEELRKEAQEEYYSAQEKYTRYADVNRGLVKLTSRAELVRLRNEMKLAQTTYNQTK- 309 Query: 261 NLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRN-A 319 L+ +V+ + Y + ++P++ P+K L++ V L G VL Sbjct: 310 QLVQAAMARVEKIR-PVYAVIQPVVVPLKPSKPRKMTILVMYVFLSGAGSLVWVLFAKGF 368 Query: 320 LRNYNAK 326 L++ + Sbjct: 369 LKDLKKR 375 >UniRef50_B8GTU6 Putative uncharacterized protein n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GTU6_THISH Length = 411 Score = 90.8 bits (223), Expect = 6e-17, Method: Composition-based stats. Identities = 62/390 (15%), Positives = 125/390 (32%), Gaps = 82/390 (21%) Query: 13 HDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAG 72 + ++I LIDL L R + I +V+ ++ L I +L V + + + I +I Sbjct: 26 YPDDEISLIDLWRTLVRRRSIIGFTVVGSLVLGIMFLIVKPDTYVFGSTI------EIGH 79 Query: 73 YNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPL 132 Y + V + L + ++E R ++T + + + Sbjct: 80 YPTEAGSRELASLDTVENALSKLQDGYIPEALRRYMDEGHEESRLRVTARNPRGSNLVVI 139 Query: 133 TVSYVGQTAEGAQMKLA-------QYIQQVDDKVNQELEKDLKDN--------------- 170 V E L + + + D Q+L+ L+ Sbjct: 140 EVKGTLDEGESILRVLNYASNQLIEDHRYLLDIQRQQLDSRLEQARLELAKYEDERMFRI 199 Query: 171 --------IALGRKNLQDSLRTQEVVAQEQK---------DLRIRQIQEALQYANQ---- 209 I + L + L+ QE+V K + +I++I+ +++ A++ Sbjct: 200 QELERVRAIERTKLELSELLQQQELVESRIKRLDDMQRLLEQQIKEIRHSIEVASETRRA 259 Query: 210 --AQVTKPQIQQTGEDITQDTLFLLG--------------------SEALESMIKHEATR 247 A V P T I D + L+ +++ ++ Sbjct: 260 AVANVGDPANAMTLLMIDSDIQQNRNRLATLDERLHIGLPNEFDELQKRLDDILRAQSNM 319 Query: 248 PLVFSPNYYQTRQ-NLLDIESLKVDDLDIHAY----------RYVMKPMLPIRRDSPKKA 296 + + + S + + A R V +P + + P K+ Sbjct: 320 KTEIEARESELERFRIDWERSTEAQRQTVRAVEARLNAARDTRVVTQPARSLEPEGPGKS 379 Query: 297 ITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 I L L++ LG M+G LRN + Sbjct: 380 IILALSLFLGLMLGVFAAFFAEFLRNAREE 409 >UniRef50_B2U7B5 Lipopolysaccharide biosynthesis protein n=1 Tax=Ralstonia pickettii 12J RepID=B2U7B5_RALPJ Length = 292 Score = 90.8 bits (223), Expect = 6e-17, Method: Composition-based stats. Identities = 40/314 (12%), Positives = 100/314 (31%), Gaps = 33/314 (10%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV 67 S D + + L ++ L R + + + + AL IG V +W +TAI+ Sbjct: 2 SSSTALDHDPLTLDEVFSFLKRHAVKLAVGTLACAALGIGLAYVLPAEWEATAIV----- 56 Query: 68 GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKN 127 Q+ + + P + + + R + D L I+ Sbjct: 57 -QVGQVQAPSSPYHPTQGPVLLETPARTVERLKA-----DAFTDTLLGNLGLPIKSGTSR 110 Query: 128 QQLPLTVSYVGQ---TAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRT 184 + + S+ + T+E ++++ + QQ + ++ L A + D ++ Sbjct: 111 RADLIRNSFNARVLRTSELVEIRVRDFSQQDAQRTLLAVQNQLIRAHAALLQPTLDRYKS 170 Query: 185 QEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHE 244 + +++++A + + + P E++ Sbjct: 171 DYNLVSHHLADARQRLEQARKLTSVQKAANPGASTFAENV------------------LL 212 Query: 245 ATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVL 304 + + + L ++ + R + R P+++ L+ + Sbjct: 213 TSVLHETEVEISKLQLQLSELNEQMSPTRTFNT-RTFSDATVSQRPVFPRRSAFLLAGAI 271 Query: 305 LGGMVGAGIVLGRN 318 G ++ I L R Sbjct: 272 FGLVITFAIALIRE 285 >UniRef50_C4K3Z7 Regulator of length of O-antigen component of lipopolysaccharide chains n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3Z7_HAMD5 Length = 308 Score = 90.8 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 56/324 (17%), Positives = 114/324 (35%), Gaps = 39/324 (12%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 + N ++IDLIDLL ++ K+ I I + ++ EKWTS AIIT Sbjct: 20 SENTLDLKPSTDEIDLIDLLAIFFKNKVKIFFITIFFVIVSALICYKLPEKWTSKAIITY 79 Query: 65 PDVGQIAG---YNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTI 121 D Q+ + + + +L I F+S ++ ++ + Sbjct: 80 IDDNQLQPFELLSYKLKLFDISLNFDQKNLLSLFIQLFNSNVLKEKYLVNTSYFQKLIKD 139 Query: 122 EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDS 181 P +NQ + + +I+ + + + ++ +D+ Sbjct: 140 HPENRNQFMLDIIK-------------NIHIEYSKSNKENDFKGYVFYTLSYSADTAKDA 186 Query: 182 LRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMI 241 + ++ + N+ + K + I Sbjct: 187 QNLLNGYINYISAIFDEKLNN--KITNKINIKKSVLSF---------------------I 223 Query: 242 KHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLIL 301 + N + L ++S+K+ D+ I + Y+ KP P+++DSP+ A ++L Sbjct: 224 IDNKGMSINDDVNLPMAKLQLEKLQSIKLSDIKIIPFEYLQKPNEPVKKDSPQSAFIILL 283 Query: 302 AVLLGGMVGAGIVLGRNALRNYNA 325 + + G MV VL ++ L N Sbjct: 284 SGMAGLMVSMFYVLVQHYLSQRNK 307 >UniRef50_D0MG08 Lipopolysaccharide biosynthesis protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MG08_RHOM4 Length = 403 Score = 90.4 bits (222), Expect = 8e-17, Method: Composition-based stats. Identities = 45/352 (12%), Positives = 102/352 (28%), Gaps = 61/352 (17%) Query: 34 IIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY------------------NN 75 I VA A+ + + + +TA + P G ++ +N Sbjct: 28 IAGVTAVAALGAVIFSLLLPNWYRATARVLPPASGGLSPLASQLLGNLPGVLGGVLGGSN 87 Query: 76 AMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER----EKLTIEPSVKNQQLP 131 + + E L+ RF+ E ++ +E + V Sbjct: 88 TAGYERYLSILSSRTMYERLVDRFNLVSVYGLEDEEHPQEAAIEELSDNVSFDVDPDFEY 147 Query: 132 LTVSYVGQTAEGAQMKLAQYIQQVD-------DKVNQELEKDLKDNIALGRKNLQDSLRT 184 L +S + + + A +++++ + + + ++ L L Sbjct: 148 LEISVLDRDPQRAAEMANFMVEELNRINADLMTQSARRYRQYVERRYHEALARLDSVLDA 207 Query: 185 QEVVAQEQKDLRIRQ-----IQEALQYANQAQVTKPQIQQTGEDITQD------------ 227 QE + + ++ +A T+ Q + D Sbjct: 208 QEAFHKRYGLFDLEAQARGFLEYVATLRAEALQTEMQYEALRAQFGDDNPQVRVLADMKA 267 Query: 228 TLFLLGSEALESMIKHEATRPLVFSPNYYQ----TRQNLLDIESLKV-----------DD 272 T EALE + Q R+ LL L+V ++ Sbjct: 268 TAERRYREALEGQERLLPVPQQEIPSALRQYFDLERERLLQTRILEVLAPLYEQARFEEE 327 Query: 273 LDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 + A + V + P+++ P++++ ++ L + VL + Sbjct: 328 RRVEAVQVVDPAVPPVKKAWPRRSLIVLGITLAAFALSVLFVLAHGWWQEQR 379 >UniRef50_A4BYL5 Putative uncharacterized protein n=1 Tax=Polaribacter irgensii 23-P RepID=A4BYL5_9FLAO Length = 371 Score = 90.4 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 50/369 (13%), Positives = 125/369 (33%), Gaps = 47/369 (12%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + N + + ID+I LL + W + +I+ +V L + +K ++T++ Sbjct: 1 MIQENKNIPLTGDDSIDIIALLKEFWNARRSILKITLVFAFLGLFVAIFSKNEYTASTTF 60 Query: 63 TQ--------PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQE 114 +G +A G + +L ++ L L + Sbjct: 61 VPLVQGKSSGGSLGSLASLAGINLGGGGSSDEISPELYPLIVNSIPFQLELLNTQLTIEG 120 Query: 115 EREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALG 174 + + ++ + +N P + + + G L +++ + + + + I++ Sbjct: 121 QEQLVSYQYYYENIYSPGVLHIIKKYTLGLPSLLISFLKSDAEIIEKNTLDKENEIISIS 180 Query: 175 RKN-----------------------LQDSLRTQEVVAQEQKDLRIRQIQEAL------Q 205 + + +L + A+ +I AL Sbjct: 181 QTESVLIKSLKAQLGLSVNAKEGYISISVTLPEAKASAELALKAQITLQDYALNFKTQKS 240 Query: 206 YANQAQVTKPQIQQTGE--------DITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQ 257 A + + ++ E QD + + + + + + + + Sbjct: 241 IAQLNYIKERYAEKKDEFNSVKFTLARFQDQNNGINTSLGRTKLLQLQSDYDLAFSVFSE 300 Query: 258 TRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGR 317 + L + L+V D + + +P + PK+AI LI+ + LG ++ G +LG+ Sbjct: 301 LAKKLET-QQLQVKK-DTPLFTVLKPVSIPSEKSGPKRAIILIVYLFLGFVISLGAILGK 358 Query: 318 NALRNYNAK 326 L++ A+ Sbjct: 359 KYLKSLKAE 367 >UniRef50_B0VFR9 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFR9_9BACT Length = 395 Score = 89.6 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 50/385 (12%), Positives = 122/385 (31%), Gaps = 79/385 (20%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ--------- 64 + ++ L+D+++ + + K +I ++ AI Y V + W S A + Sbjct: 2 NKNELGLLDIILVIAKRKTLVISICLLVAIGAIIYSLVVPQYWESKATLMPIAESGSLGS 61 Query: 65 ----------PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQE 114 + Q Y+ A++ IY + K + +TL E Sbjct: 62 LGGGFMDLLGSGLLQTDKYDMAVDFIYIMQSRKFQEEVIRKFNLIPYYKINEPDTLKAME 121 Query: 115 EREKLTIEPSV----KNQQLPLTVSYVGQTAEGAQMK-------LAQYIQQVDDKVNQEL 163 K E ++ + + + + E ++ L +YI ++ Sbjct: 122 LAVKKLSESTMQIFYDQKTYLVNIIAETKNKELSRQIVQYHLDSLNKYILHSKMSKGRQK 181 Query: 164 EKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEA--------------LQYANQ 209 + L+ + + + ++ + + I Q EA + + Sbjct: 182 REFLEKQVDSHLQAVYSLSEQIRDFQKKNRSIDITQQTEAQLELYSDIVAEYMQTEIEHS 241 Query: 210 AQVTKPQIQQTGED----------------------------ITQDTLFLLGSEALESMI 241 +++ + D + L + + M+ Sbjct: 242 LALSQYSADSPVVINLAEKLQLLKKKIKSLEKSGSDLVPEYIVQIDKIPDLAMQYAQMML 301 Query: 242 KHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLIL 301 E + ++ Y + L +E +K D+ + P L R PK+A+T+++ Sbjct: 302 NLEIEKKII---EYLYPQFELAKLEEVK----DLPTFEVYDAPQLAGIRSKPKRALTVVI 354 Query: 302 AVLLGGMVGAGIVLGRNALRNYNAK 326 + + ++ + L +L+ N + Sbjct: 355 STVAAFILSCLLALIIESLQGENKE 379 >UniRef50_B2JKP4 Exopolysaccharide transport protein family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JKP4_BURP8 Length = 744 Score = 88.9 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 32/209 (15%), Positives = 69/209 (33%), Gaps = 10/209 (4%) Query: 110 LDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKD 169 + N+ R+K+ + + + + + +Y Q + +L + Sbjct: 268 IGNEYMRQKVQRTQEEAEKSIAFLNQQLPELKAKLEQAEEEYNQFRSEHGAVDLGAEA-A 326 Query: 170 NIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTL 229 + Q+ + + Q D R AL A Q+ + + + + L Sbjct: 327 ALLQSTAQAQNRIAELR-QQRAQLDARYMPDNPAL-IATNGQLEEAEKALSELAVQTRRL 384 Query: 230 FLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIR 289 L L + + N T++ + ++ KV + R + +P Sbjct: 385 PPLEQSVLRLQREVQVDTN--IYTNLLNTKEQMRLAKAGKVSNA-----RLIDSAAVPEG 437 Query: 290 RDSPKKAITLILAVLLGGMVGAGIVLGRN 318 PK+ + ++ L G VG+ VL R Sbjct: 438 PIRPKRTLIVVAGSLTGIFVGSAYVLFRR 466 Score = 44.2 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 23 LLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYG 82 LL L+ G+ TI+I + + + Y +A+ + + +I D A N +V Sbjct: 27 LLDTLYEGRKTIVIIAALFTLVGLVYAMLARPVYQADMLIHVED-SDGAAKNALADVSAM 85 Query: 83 QAAPKVSDLQETLIG 97 A + + ++ Sbjct: 86 FAVKTAASAEIEVLR 100 >UniRef50_A3JHV6 Putative uncharacterized protein n=1 Tax=Marinobacter sp. ELB17 RepID=A3JHV6_9ALTE Length = 260 Score = 88.5 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 48/327 (14%), Positives = 103/327 (31%), Gaps = 77/327 (23%) Query: 1 MRVE-NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTST 59 M ++ Q+ ++I L+DL R + + ++ + Y A K+ Sbjct: 1 MNNSYPHSQEDQDRYSDEISLVDLATTFIRRRRVFYVVFLIFTLGGLAYALQASNKYEYV 60 Query: 60 AIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKL 119 +++ G A ++ L+ + +A+ A +T KL Sbjct: 61 SLVQVAQKGGDVSLQP--------PAVVIATLENRWLPEVQTAYRAKNDT--------KL 104 Query: 120 TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQ 179 S N + + +TA + D++ L Sbjct: 105 PFSISFNNPEGTGLIQLTSETA-----------------------LEHGDDVKAAHAALI 141 Query: 180 DSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALES 239 D L + +Q + + + ++ + +A +P + AL + Sbjct: 142 DYLSRYQAERIKQDRVSLERQMKSAETIIEALRGQPDTGE----------------ALAA 185 Query: 240 MIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITL 299 I+ A +E+L ++ + + + PK+++ + Sbjct: 186 AIQRVAGLESA--------------LENLDETEVLVQS-------RQSAEKTGPKRSLIV 224 Query: 300 ILAVLLGGMVGAGIVLGRNALRNYNAK 326 ILA LLGGM+G +V N + Sbjct: 225 ILATLLGGMLGVFMVFMAEFGANVKMQ 251 >UniRef50_A4SDR9 Lipopolysaccharide biosynthesis protein n=2 Tax=Chlorobium/Pelodictyon group RepID=A4SDR9_PROVI Length = 370 Score = 87.7 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 35/354 (9%), Positives = 93/354 (26%), Gaps = 44/354 (12%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 +N + ++I L+DL + L + K II + + + Sbjct: 8 TDNPQFQRPDPYDDEISLLDLAITLAKHKKLIIGLPLAVAIVTAVVTMF----------M 57 Query: 63 TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIE 122 ++ + + + ++L+ RF+ A Sbjct: 58 PATYTATTTLLPRGVDKNILVSLVESQPMGDSLVARFALQ-KAYGVATSRDARGVLAEAA 116 Query: 123 PSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ-------ELEKDLKDNIALGR 175 + +T+ + E A Y + + + E + + Sbjct: 117 SVKAEKDGTITLDVDDSSPERAAAIANAYPDVLRQLMGKFIVTPASERRMLFEKQLPDAE 176 Query: 176 KNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSE 235 L+++ + + K + + E+L A + +++ + + + Sbjct: 177 TMLEEARSAMQELQAGSKSVAMDGKVESLVKAASELKARIAMKEVELVVIGNIDSGTFQD 236 Query: 236 AL-ESMIKHEATRPLVFSPN--------------------YYQTRQNLLDIESLK----- 269 L + N L + Sbjct: 237 GLPRQQLNALWEELASVENNPTFISKVSGREQAYIRAVGGLTYAETRLDALRRQIGLAKV 296 Query: 270 VDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 + + + + + +P P++A +++A L G + ALR+ Sbjct: 297 AEQREAPMIQVLNRADVPSGASKPQRAKIVLIAALAAGFLAVLWAFVVEALRSA 350 >UniRef50_D2QRK9 Lipopolysaccharide biosynthesis protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QRK9_9SPHI Length = 362 Score = 87.7 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 45/352 (12%), Positives = 108/352 (30%), Gaps = 35/352 (9%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 E + D +I L D++ L + +++ IV + + Y +TS + Sbjct: 4 TEAQKQENREEDEIEIRLSDIVQFLKDSRRRVLLGSIVGLIIGALYAFSKPNVYTSQVTV 63 Query: 63 TQPDVGQIAGYN-----------NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLD 111 + G + + G DL ++ A L++ + Sbjct: 64 MPELQAKAGGLGGLGGLAGLAGIDLNSATGGTMDAIRPDLYPDVLKSIPFALYLLSQPVY 123 Query: 112 NQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNI 171 +++ + K+T++ + ++ A+ + + ++DL + Sbjct: 124 SEKLQAKMTLQEFINRVNRSWIKDLFAGGSKDAENRKLDPKNFSKAIQITKEQEDLVKIV 183 Query: 172 ALGRKNLQDSLRTQEVVAQEQKD---------LRIRQIQEALQYANQAQVTKPQIQQTGE 222 D +A + D L + + + + K T Sbjct: 184 QTNMSAAYDKKTGILTLAATESDPVVAATEVRLSLEYLTNYIVTYRTEKARKQVAFLTKR 243 Query: 223 DITQDTLFLLGSEALESMIKHEA--------------TRPLVFSPNYYQTRQNLLDIESL 268 + AL S + + Y L+ + Sbjct: 244 VSEAKGRYQSAEYALSSYRDRNRSLFLQTAKLEEQRLQADYLLEQSVYNELSKQLEQAKI 303 Query: 269 KVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 KV + + ++ + P++P+R+ +PK+ ++ + G V I+L + L Sbjct: 304 KVQE-ETPVFKVLEPPVVPLRKSAPKRTFIMLGFAIAGVFVTLIILLTKRLL 354 >UniRef50_Q7NQT3 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NQT3_CHRVO Length = 351 Score = 86.9 bits (213), Expect = 8e-16, Method: Composition-based stats. Identities = 52/333 (15%), Positives = 110/333 (33%), Gaps = 35/333 (10%) Query: 10 GQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQ 69 + P++++L D+++ ++ ++ LA G +++T+ A++ P Sbjct: 21 ERQSAPDELNLFDIILVAKEQWRLLLAVPLLLAVLAAGISLAMPDQYTAKALVNIPAPVG 80 Query: 70 IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQ 129 AG G + + L E + +F E + ++ + Sbjct: 81 AAG---------GVNIVQSTSLLEQAVEKFQLQRYYAVEDNRSALLALSNVVKTTAGKD- 130 Query: 130 LPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVA 189 L +S + AE A + D Q + + LQ L + Sbjct: 131 GLLEISATDRNAEQAARLGN----YLADLTRQHILDGNLTEQSKRYFVLQKRLDVESEQV 186 Query: 190 Q--EQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEA---LESMIKHE 244 +K ++ QEA Q+ + Q+ S A L+S + Sbjct: 187 SQLSRKVAQLVPDQEAALGGEGMQLISGFATLEAQLAFQNVQAAGNSGAVSNLQSSVMQL 246 Query: 245 ATRPLVFSPNYYQT-RQNLLDIESL---------------KVDDLDIHAYRYVMKPMLPI 288 + +P Q + L + L L + V+K P+ Sbjct: 247 RASLELANPKVRQMSNEQLAGLRDLYFHRALAAELQRQVSLAKSLADQDVQIVLKASAPL 306 Query: 289 RRDSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 + PK+ + ++LA L+G M+ +++ + R Sbjct: 307 EKSGPKRTLIVLLAGLVGLMLAIALIVCKRQWR 339 >UniRef50_B5CXQ8 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CXQ8_9BACE Length = 369 Score = 86.9 bits (213), Expect = 8e-16, Method: Composition-based stats. Identities = 39/355 (10%), Positives = 98/355 (27%), Gaps = 43/355 (12%) Query: 3 VENNNVSGQNHDP---EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTST 59 +E N Q I L L+ L+ + + ++ + + + + Sbjct: 1 MEEKNKKQQETSDEIKNNITLFKLIRILFHNRFKLYKVCGISALIGAVIGFSLPKTYHAY 60 Query: 60 AIITQPD----VGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEE 115 ++ ++G + ++ L + E L + Sbjct: 61 VSLSPESGMNGASGLSGIASMFGLVNSSTGFGEDALTFNMFPEIVKTNPYALEVLQVPIQ 120 Query: 116 REK-----------------LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQY------- 151 + T + + S Q + + Sbjct: 121 TQDGKTMLLYDYLDIEQKPWWTYVTGLPKAAIGGVKSLFSQEKPDTVTTIDPFKLTKEQD 180 Query: 152 ----IQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYA 207 + Q KV +++ ++ + L ++ V + Q+ + + ++A Q Sbjct: 181 MHIKMLQDVLKVETDVKTNMTKVSVALQDPLAAAIVADSAVYKLQEYITDYRTRKAKQDY 240 Query: 208 N------QAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQN 261 + + + Q D + + + S + + Y Q+ Sbjct: 241 DFQLNLCEQYKKEYFAAQQEYAQFADANRNVILQTVTSEKERLQKNLSLAEQIYSQSMGQ 300 Query: 262 LLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLG 316 L + KV + + V +P+ SPKK + +I L + + +L Sbjct: 301 LQVLR-GKVQEAK-PVFAVVEPATVPLVPSSPKKMMIIIAFAFLAFIFESAWILF 353 >UniRef50_B9L6P5 Chain length determinant protein n=2 Tax=Nautiliaceae RepID=B9L6P5_NAUPA Length = 281 Score = 86.5 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 42/315 (13%), Positives = 108/315 (34%), Gaps = 51/315 (16%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 + ++IDL +++ L + K I + + LA+ Y K + A I Q+ Sbjct: 16 PIEDDEIDLKQIIILLLKYKKFIFLFTFIITVLALIYAYTIKPIYEIKANI------QLG 69 Query: 72 GYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLP 131 +N+ + + I + ++ D K+ + +K + Sbjct: 70 YISNSNSNSNSKIYLLEPQATMIYI------INKFDKSKDINASYPKVNVNI-IKKTKDI 122 Query: 132 LTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQE 191 L +S + A+ L + + + + N +L +++ I + L + ++T + Sbjct: 123 LNISVQNFSNTSAKEYLIRIVNTLKKQENSKLYAYIQN-INSQIQILNNQIKTIQN---- 177 Query: 192 QKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVF 251 I + ++L ++ I Q + D + Sbjct: 178 ----EIILLNKSLP-----KIKDTNIYQLTLNKIND-----------------------Y 205 Query: 252 SPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGA 311 + + D+++ K+ ++I + PKK + +I+A + G ++ Sbjct: 206 QNQITDIKLKIADLKT-KISPINITKTHIIGTIKQNPNPIKPKKKLIVIIAFITGLILSI 264 Query: 312 GIVLGRNALRNYNAK 326 +V +++ + Sbjct: 265 FLVFFIEFVKSLKEQ 279 >UniRef50_A3SUA0 Putative uncharacterized protein n=3 Tax=Rhodobacteraceae RepID=A3SUA0_9RHOB Length = 712 Score = 86.2 bits (211), Expect = 1e-15, Method: Composition-based stats. Identities = 53/309 (17%), Positives = 104/309 (33%), Gaps = 38/309 (12%) Query: 1 MRVENNNVS-GQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLA-VAKEKWTS 58 M +N S ++ D + IDL L+ LWRGK+ I ++ + LA Y VA + S Sbjct: 4 MNQSQSNFSGPRDEDDDTIDLGALIGTLWRGKLIIAAVTLIFMLLAGYYAYGVAVPTYRS 63 Query: 59 TAIITQPDVGQ-IAGYNNAMNVIYGQAAPKVSDLQ----ETLIGRFSSAFSALAETLDNQ 113 TA++ I + G + ++++ L G+ + +A+ Sbjct: 64 TAVVVLDTKEDSIVDLQAVVGGFSGDSTEINTEIEVLKSRGLAGKVVDRLNLIAD--PEF 121 Query: 114 EEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIAL 173 R + S + ++ + E + +L KV + + L + +++ Sbjct: 122 NGRLREPSMRSRVISGIRSLLTSSTPSPEVPETELH------RAKVRDSVIQSLLNKVSV 175 Query: 174 GRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQ------- 226 K +I L NQ +V ++ E ++ Sbjct: 176 SNIRQSLVFNVTAETESPVKSAQIANTIVELYILNQIEVKFEATEKATEWLSNRVSELQI 235 Query: 227 ----------------DTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKV 270 + + G +ALE IK R + + L D+E+ + Sbjct: 236 ELENAEKKVSEFTARTQLVSIEGLQALERQIKELRDRIDGAALTREGLQTRLADLEAAQT 295 Query: 271 DDLDIHAYR 279 D + A + Sbjct: 296 PDEKLDAAQ 304 Score = 47.6 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 44/300 (14%), Positives = 95/300 (31%), Gaps = 32/300 (10%) Query: 52 AKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLD 111 + E + + I N ++V + + + ET S+ + L Sbjct: 148 SPEVPETELHRAKVRDSVIQSLLNKVSVSNIRQSLVFNVTAETESPVKSAQIANTIVELY 207 Query: 112 NQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNI 171 + E + L VS + E A+ K++++ + + L+ + Sbjct: 208 ILNQIEVKFEATEKATEWLSNRVSELQIELENAEKKVSEFTARTQLVSIEGLQALERQIK 267 Query: 172 ALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFL 231 L + +L + + + + E L A A +T+ + Q L Sbjct: 268 ELRDRIDGAALTREGLQTRLADLEAAQTPDEKLDAAQDAALTRIFSNGLSSETNQTAFDL 327 Query: 232 LGSEALES----------MIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAY--- 278 + ++ + Q+L++++ L + Sbjct: 328 RFDTVMTRVRADLVRSTQQLEALRNSEEELAAQLASQGQDLIELQQLTRESEATRLLYEY 387 Query: 279 -------------------RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 R + ++P +PKK+ + LA++LG MVG+G+VL R Sbjct: 388 FLTRLKETSAQEGIQKADSRMLSSSVVPNSPSAPKKSQIIALAMILGAMVGSGLVLLREF 447 >UniRef50_A4EGG2 Succinoglycan biosynthesis transport protein exoP n=3 Tax=Rhodobacteraceae RepID=A4EGG2_9RHOB Length = 731 Score = 86.2 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 97/267 (36%), Gaps = 18/267 (6%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLA-VAKEKWTSTAIITQ-PDVGQ 69 + ++IDL L+ LWRGK+ II+S ++A+ Y VA +T+TA + Q Sbjct: 39 PSEDDEIDLGALIGTLWRGKLWIILSAVIALVAGGYYAFGVATPVYTTTASVALESRQEQ 98 Query: 70 IAGYNNAMNVIYGQAAPKVSDLQ----ETLIGRFSSAFSALAETLDNQEEREKLTIEPSV 125 I ++ M+ + G ++++ L+G+ + +A+ N ++ Sbjct: 99 IVDIDSVMSGLSGDQITINTEVEVLRSRRLMGKLVDDLNLVADPEFNSTLTDETWYSLGA 158 Query: 126 KNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQ 185 + + + A L ++ + + + + I++ Sbjct: 159 MADAIRENIF-----GQPAGNLLQS-----NEAIRDSVVDAVLEQISVSNVRQSYVFNIS 208 Query: 186 EVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQD-TLFLLGSEALESMIKHE 244 V K + L +Q + + + E +T + EA E+ +K Sbjct: 209 VVTENPAKSAAMANRLAELYVEDQIVLKFEKTAEATEWLTDRVAELQIELEASENQLKEF 268 Query: 245 ATRPLVFSPN-YYQTRQNLLDIESLKV 270 ++ + SP + L D+ + Sbjct: 269 SSNTDLISPEGLVGLNRQLKDLRDRQA 295 Score = 59.6 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 59/160 (36%), Gaps = 8/160 (5%) Query: 166 DLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIR---QIQEALQYANQAQVTKPQIQQTGE 222 DL A+ L A + + R + A+ +++ + Q+ Sbjct: 319 DLLQMAAVANDTALRQLAATNDTAAIENQFQTRFATILARAVMARDRSVAQADTVAQSMV 378 Query: 223 DITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVM 282 +ITQ ++ E + + + + L+ + R + Sbjct: 379 EITQSIATQSNELVALQQLQRETEASRLIYEFFLGRLKETSVQQGLQQAES-----RILS 433 Query: 283 KPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 +LP +P+KA+ L +++LG +VG G+VL R +N Sbjct: 434 YAVLPSAPSAPRKAVILTFSMILGLIVGTGLVLLRELSQN 473 >UniRef50_Q7NZZ7 Putative uncharacterized protein n=1 Tax=Chromobacterium violaceum RepID=Q7NZZ7_CHRVO Length = 401 Score = 85.0 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 56/380 (14%), Positives = 125/380 (32%), Gaps = 65/380 (17%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV 67 S Q ++IDL LLV+L R + II I+ + + Y +AK +T+ I P Sbjct: 12 QSSQPTQNDEIDLTALLVKLARQRNWIIACTILCGTVTLCYALLAKPIFTAQTSIMPPQQ 71 Query: 68 GQ-------------------IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAE 108 I+G N ++ G + + + LI RF E Sbjct: 72 QSSGMSALLGQLGGLAGAAGGISGLKNPNDLYIGM--LQSRTVADKLIARFKLQSRYEQE 129 Query: 109 TLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLK 168 T++ + + V + + V+ + A Y+ ++ D Sbjct: 130 TVEGARKTLQQKSSF-VSGKDGLIAVAVDDTDPQFAATLANAYVDELKALNRSLAVTDAA 188 Query: 169 DN---IALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDIT 225 K+ + L E ++ ++ + E A + VT+ + +++ Sbjct: 189 KRRLFFEQQLKDTKAQLAAAETDLRKTQEATGLILPEGQLPAIVSSVTQLRATIAAKEVQ 248 Query: 226 QDTLFLLGSEALESMIKHEAT--------------------------------------- 246 + + + + IK + Sbjct: 249 LEAMKSFATAQNPAYIKAQQELSGLHEQLAKLETGQRGNGDLLVPTGKFAQSGLEYMRKL 308 Query: 247 RPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLG 306 R L + ++ ++ + + D + + + P + PK+++ ++L +L G Sbjct: 309 RELKYQETIFELLSKQYELAKID-EAKDSSLIQVLDTAVPPELKSKPKRSLIVMLGLLGG 367 Query: 307 GMVGAGIVLGRNALRNYNAK 326 M+G L R+ ++ +++ Sbjct: 368 LMIGILSALLRDLFQSEHSQ 387 >UniRef50_B5WI70 Capsular exopolysaccharide family n=1 Tax=Burkholderia sp. H160 RepID=B5WI70_9BURK Length = 730 Score = 84.2 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 78/263 (29%), Gaps = 14/263 (5%) Query: 70 IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQ 129 +AG + + ++DLQ L + E E+ + +V Sbjct: 214 VAGPHTEFTLTRSPFLETITDLQNKLT--VAEHVKQSGVIGIAFEGSERQKVTDTVNTIA 271 Query: 130 LPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ--ELEKDLKDNIALGRKNLQDSLRTQEV 187 + A+ LA + +Q+ + + E+ + Sbjct: 272 REYVNQNNARKESDAERSLALFDKQLPRLRAEVDDAEQRYNAFREAHGAVDLGEESRLLL 331 Query: 188 VAQEQKDLRIRQI-QEALQYANQAQVTKPQIQQTGEDITQDT-------LFLLGSEALES 239 + +I + Q++ A + P + I + G ALE Sbjct: 332 QQMVDLETKITDLKQQSSDLAQRFAPGHPAVASVDAQIADLQHRRDALSRQVAGLPALEQ 391 Query: 240 MIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITL 299 + V + Y ++ K + R V + P R PK + L Sbjct: 392 TVLRLQREVRVNTGLYTNLLNRAQELRVAKAAEAG--NVRVVDYALPPDRPAKPKVPLVL 449 Query: 300 ILAVLLGGMVGAGIVLGRNALRN 322 L+ +LG ++G R+A+ Sbjct: 450 ALSSVLGLLIGTTWAFARHAVSR 472 Score = 49.9 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 33/91 (36%), Gaps = 8/91 (8%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M +++ + +N D Q+ L D L I+ + +L Y +A + + A Sbjct: 1 MALDSTLLYRRNRDTGQLRLSDYTSVLKVHWRFIMCVALAVFSLGALYALLAPPTYRADA 60 Query: 61 II--------TQPDVGQIAGYNNAMNVIYGQ 83 +I T P Q+A N + Sbjct: 61 LIQVDNQNPNTDPAFSQLAAIFNVRTTSDTE 91 >UniRef50_O52788 Tyrosine-protein kinase ptk n=4 Tax=Acinetobacter RepID=PTK_ACIJO Length = 733 Score = 83.8 bits (205), Expect = 7e-15, Method: Composition-based stats. Identities = 42/212 (19%), Positives = 82/212 (38%), Gaps = 15/212 (7%) Query: 112 NQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDD-KVNQELEKDLKDN 170 +Q+ E+ + E + + L + + Q + A+ + ++ QQ + V +E E L + Sbjct: 267 SQQNIERRSAETAQTLKFLDEQLPELKQQLDVAEREFNKFRQQYNTVDVTKESELFLTQS 326 Query: 171 IALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLF 230 + L + Q + E A+ + + + A Q +I + + + Sbjct: 327 VTLETQKAQLEQQVAEAGAKYTSEHPVMKQMNA-----QLGAINKKIGELNATLKELPDL 381 Query: 231 LLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRR 290 L ++ + +Y Q R +I R V + PI Sbjct: 382 QRRYLQLYREVEVKQQLYTALLNSYQQLRI---------AKAGEIGNVRIVDTAVEPIEP 432 Query: 291 DSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 +PKK LIL++ LGG +G + L RN +R+ Sbjct: 433 IAPKKLQILILSIFLGGFLGTLLALLRNMMRS 464 Score = 46.9 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 36/306 (11%), Positives = 91/306 (29%), Gaps = 32/306 (10%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT-- 63 +S + + IDL +L L I + +I+++ A+ YL + ++ A++ Sbjct: 2 YVMSQTTNTEDTIDLKELFFSLIAQWKLIALCIILSLICALLYLRATPDTYSVNALVQVE 61 Query: 64 ------QPDVGQIAGYNNAMNVIYGQA------------------APKVSDLQETLIGRF 99 +G ++ + K+S + + R Sbjct: 62 ENKGASAALLGDLSSMIEQKQPAQAEIEILKSRLVLGNVIQHLNLDLKISGTENSFTDRL 121 Query: 100 SSAFSALAET-----LDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQ 154 S E L +E+ + ++ + + + + Sbjct: 122 LSPHHYQTEYQPKSVLFKDDEKVFDIRQFNIPASFRDKKIELRFKDGQFSLTNTQTEQVI 181 Query: 155 VDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTK 214 + K NQ D + QD L ++ ++ + I A + ++T Sbjct: 182 LTGKTNQSNTLRTADGLWNISIYTQDQLNDVYLIQKQSLPAAVNNILTNYSVAEKGKLTG 241 Query: 215 PQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIE-SLKVDDL 273 +L + + ++ R + + L +++ L V + Sbjct: 242 ILGLNYQGTDKTHITQVLNAILVSYSQQNIERRSAETAQTLKFLDEQLPELKQQLDVAER 301 Query: 274 DIHAYR 279 + + +R Sbjct: 302 EFNKFR 307 >UniRef50_B8IGI5 Lipopolysaccharide biosynthesis protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IGI5_METNO Length = 536 Score = 83.8 bits (205), Expect = 7e-15, Method: Composition-based stats. Identities = 43/303 (14%), Positives = 96/303 (31%), Gaps = 35/303 (11%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 + +++ D++ R + II + +AL Y+ V + + + I + + + Sbjct: 18 SPVDQRLSPRDVISFWRRYVLLIISCMACCVALGEAYVLVTPSTYAAASQILI-ESRRAS 76 Query: 72 GYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLP 131 G+ +V Y Q + S ++ + + + +++ ++ + Q Sbjct: 77 GFAATSDVSYAQYSLDSSQIENQI------------QIIKSEQTSRRVVRAMQLDENQNQ 124 Query: 132 LTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQE 191 + ++ + + D+ + L D + + R E+ Sbjct: 125 EKLKASVLSSLRGYILGNGDVATPPDRTTMAMRD-LLDRLQVRRIG---QSYVLEISYWS 180 Query: 192 QKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVF 251 + + +I A+ A + +I GSE LE I + Sbjct: 181 EDPVAAARICNAITAAYFQDLLGSKIDAAKN----------GSELLEQRISLLRDQWATA 230 Query: 252 SPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGA 311 L V L R + LP +R P +++ L + LLG V Sbjct: 231 DEAVRTGT--------LDVTKLATPEARVITMAALPSKRSWPHQSLILAFSALLGLFVAL 282 Query: 312 GIV 314 Sbjct: 283 VSA 285 >UniRef50_A0LGD5 Lipopolysaccharide biosynthesis n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LGD5_SYNFM Length = 408 Score = 83.8 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 42/385 (10%), Positives = 101/385 (26%), Gaps = 72/385 (18%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD 66 + + + I L+DLLV + K I++ A + +T TA + P Sbjct: 2 ENTPRQSSEKVITLLDLLVITAKRKRLILVGTFSFFAFLMALCFYMDPIFTGTAKVVVPQ 61 Query: 67 VGQI-------------------AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALA 107 + K + + +I ++ Sbjct: 62 NTSSSTAILSQIAGSTGAAGLISGALGLGSSADMYVGLLKSRTVIDAVIQKYGIYALYKD 121 Query: 108 E---------TLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDK 158 + +D+ E ++P + + +T+ + + A+ + ++ Sbjct: 122 DRILGSVRPYDMDSCRESFMGALKPELDAESAIITIGIEDKDRQRARDMANSLVDELLKI 181 Query: 159 VNQELEKDLKD-------NIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEAL------- 204 + + + L + + ++ + ++I + A Sbjct: 182 SQSISAASAQQKRLYYDLQLKKAHEALVGAEESLKMFQESTGVIQIDEQARATLSGIATI 241 Query: 205 --QYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEAT---------------- 246 Q A + K E L+ +K Sbjct: 242 QAQIAAKEIQLKVMRSYAASSNPDLIRATAELEGLKEQLKKLEEKESSPSGGSIIPTGSV 301 Query: 247 -----------RPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKK 295 R + Y + + L + D + V + +LP ++ PK Sbjct: 302 PSLGADYLRKVRDFKYQETVYLLLLKMYESARLD-EANDSSIVQVVDRAVLPEKKTRPKP 360 Query: 296 AITLILAVLLGGMVGAGIVLGRNAL 320 I + +L+G ++ L Sbjct: 361 VIIGVAGILIGFILSVFAAFLLEYL 385 >UniRef50_B2I037 ATPase n=12 Tax=Acinetobacter RepID=B2I037_ACIBC Length = 728 Score = 83.5 bits (204), Expect = 9e-15, Method: Composition-based stats. Identities = 46/211 (21%), Positives = 72/211 (34%), Gaps = 16/211 (7%) Query: 111 DNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDN 170 N E R + + + + AE K Q Q V +E E L + Sbjct: 267 QNIERRSAESAQTLKFLDEQLPDLKKQLDDAERQFNKFRQ--QYNTVDVTKESELYLTQS 324 Query: 171 IALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLF 230 I L K + + E+ A+ + + + Q QI + + Q Sbjct: 325 ITLETKKAELEQKQAEMAAKYTAEHPAMR-----EINGQLAAINKQIGELNSTLKQLPDV 379 Query: 231 LLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRR 290 L ++ + +Y Q R +I R V + P+ Sbjct: 380 QRQYLQLYREVEVKTQLYTALLNSYQQLRI---------AKAGEIGNVRIVDTAVEPVEP 430 Query: 291 DSPKKAITLILAVLLGGMVGAGIVLGRNALR 321 PKK + LIL+V +GG +GA I L RN LR Sbjct: 431 IKPKKLLVLILSVFVGGFIGALIALLRNMLR 461 Score = 46.5 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 6/100 (6%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M +N N + IDL +L L I + VI+++ A+ YL V + ++ A Sbjct: 1 MNQQNTNT------EDTIDLKELFFSLIAQWKLIALCVILSVVCALLYLRVTPDTYSVDA 54 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFS 100 ++ D + + E L R Sbjct: 55 LVQVEDSKGASAALLGDLSQMIEQKSPAQAEIEILKSRLV 94 >UniRef50_D0MHQ9 Capsular exopolysaccharide family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MHQ9_RHOM4 Length = 790 Score = 83.5 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 49/307 (15%), Positives = 106/307 (34%), Gaps = 35/307 (11%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 S + D +I+ ++ + RGK I+++++V Y + S+AI+ Sbjct: 21 PPASDEKRDEGRINFAEIWHTIRRGKWIILLTMLVVAGAIGAYTYTLPPVYESSAIVFVD 80 Query: 66 DVG--------------QIAGYNNAMNVIYGQA--------APKVSDLQETLIGRFSSAF 103 G + +N + ++ A A + RF Sbjct: 81 TRGGGNAPVSVAAFTPIERRALSNELGILRNSAELATRVAEAIVATAETAGAKDRFPILA 140 Query: 104 SALAE---TLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVN 160 A ++ R + + S + Q + ++ T E A + +Y ++ + Sbjct: 141 PAEDGREPSIREIAFRLRERVRFSPLSDQDMIVITAESTTPEEAAVIANRYAEEYERFSR 200 Query: 161 QELEKDL-------KDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVT 213 + + L + + R+ L++ R E A+ ++ +R+ E L A AQ+ Sbjct: 201 ERSRESLAAAREFVEKQVEQRRQELEELERQWEAFARSRQVVRLGPQGERL-VAEVAQL- 258 Query: 214 KPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDL 273 + Q + Q+ L E ++ LV S + + K+ +L Sbjct: 259 EAQRDAARFQLEQEKSALQFIEQELQKLEPGLVDELVKSRQVSTLEAQIDALSK-KIAEL 317 Query: 274 DIHAYRY 280 + A +Y Sbjct: 318 KVQAEQY 324 Score = 40.7 bits (93), Expect = 0.066, Method: Composition-based stats. Identities = 13/136 (9%), Positives = 37/136 (27%) Query: 165 KDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDI 224 + + L + ++ A + L + A + Q + + + Q + Sbjct: 351 DHFEKQREQLQAQLVKEMIGRDSQAPASEPLSYVEQLRARRIEKQLAIQELERQVEAFNQ 410 Query: 225 TQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKP 284 + I+ E + T + + ++ + V Sbjct: 411 ELAKYEGQLARLPRQQIELEQLERRRALAEQWYTTFVQELQRIMIAEQSELGYVKIVSSA 470 Query: 285 MLPIRRDSPKKAITLI 300 +P P +A ++ Sbjct: 471 FVPTVPVRPNRAQNIV 486 >UniRef50_Q6AS85 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AS85_DESPS Length = 360 Score = 83.5 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 61/335 (18%), Positives = 114/335 (34%), Gaps = 17/335 (5%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII---- 62 +S N+ ++IDL+ LLV +W+ + I +V V ALA+ L + TA I Sbjct: 23 PLSVSNYRDDEIDLLSLLVDVWQQRWFIGGAVSVIGALALVLLLALPSTYEVTAEIEIPS 82 Query: 63 ------TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER 116 QI N NV + ++ S + L Sbjct: 83 AVSSPLLPALYQQIDTLENLENVPSEMIGEDGNMELPFVLRTPSVGSNPLLAQHRFNRVY 142 Query: 117 EKLTIEPSVKNQQLPLTVSYVGQTAEGAQM-----KLAQYIQQVDDKVNQELEKDLKDNI 171 + L Q ++ + A++ L+ + K NQ + I Sbjct: 143 QLLKSRDMWLAYQKKTGKTFSAEQGLQAELGRFKGALSVTVLAPQGKKNQSITNPTVLGI 202 Query: 172 ALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFL 231 +L + R E Q + + ++ Q + + Q + + + Sbjct: 203 SLRGGGDEKLARELEGFLQFVNERVVTEVSGGQQIILKGYRDSVENQISLIQLQNQVGPM 262 Query: 232 LGSEALESMIKHEATRPLVFSPNY--YQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIR 289 S A + A+ P Y Q + +L +++ D + ++Y+ P+ Sbjct: 263 KDSTAGKGQDAGVASMPATAGLAYGLTQLQSSLQQLQNFSPDLAGLKGFQYLSHPLGEGE 322 Query: 290 RDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 + PKKA+ L +L G + + L R AL+ Sbjct: 323 KIKPKKALILAATLLFAGFLAIVLALLRTALQRRK 357 >UniRef50_A3N2K1 Putative uncharacterized protein n=3 Tax=Actinobacillus pleuropneumoniae RepID=A3N2K1_ACTP2 Length = 292 Score = 83.1 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 58/307 (18%), Positives = 95/307 (30%), Gaps = 27/307 (8%) Query: 26 QLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAA 85 L R T+IIS V +A G ++ + W +TA P V + Y + Sbjct: 1 MLLRYLFTLIISTAVGVAGGFGLSSLDTQTWKATAEFEPPKVSTLGNYYTLFSTYTFLNG 60 Query: 86 PKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQ 145 + + S E E+ L K + V T Sbjct: 61 GDGVSYNVIADDK--GSLSLAPEIGRKAEDSATLGSYNEFKRNLISTDVLVEFLTQTETV 118 Query: 146 MKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQ 205 AQ Q Q L + A + + +R +EA Sbjct: 119 KLKAQLTHQPIVMTAQSLAEQFVFQAATKTQPF------------DSLSVRSANPEEAY- 165 Query: 206 YANQAQVTKPQIQQTGEDITQDTLFLLGS--EALESMIKHEATRPLVFSPNYYQTRQN-- 261 ++ I + Q L + + L IK A L Q Sbjct: 166 -----KLLNDFIAFANQQTKQTLNAELVAKWKNLFQQIKSAADIKLGAIQQGNQIATQDW 220 Query: 262 ---LLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 L + S++ D + A+R+V P +P+ D+P + +++ L G ++G IV Sbjct: 221 NGKLNLMRSVRPLDDQLTAFRFVKTPSVPLTPDTPNPTLWMMIGALAGLLLGMVIVSTMG 280 Query: 319 ALRNYNA 325 LR A Sbjct: 281 LLRKKPA 287 >UniRef50_C0VIY7 Protein tyrosine kinase n=4 Tax=Acinetobacter RepID=C0VIY7_9GAMM Length = 740 Score = 82.7 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 76/205 (37%), Gaps = 15/205 (7%) Query: 118 KLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDD-KVNQELEKDLKDNIALGRK 176 + + E + + L + + Q + A+ + ++ QQ + V +E E L +I L K Sbjct: 282 RKSAETAQTLKFLDEQLPELKQQLDKAEREFNKFRQQYNTVDVTKESELYLTQSITLETK 341 Query: 177 NLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEA 236 ++ + ++ A+ + + A A K QI + Q Sbjct: 342 KIELEQKQADIAAKYTAEHPAMREINAQITA-----IKKQIADLNSTLKQLPDLQRQYLQ 396 Query: 237 LESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKA 296 L ++ +Y Q R +I R V + P+ PKK Sbjct: 397 LYREVEVNTQLYTALLNSYQQLRI---------AKAGEIGNVRIVDTAVEPVEPIKPKKL 447 Query: 297 ITLILAVLLGGMVGAGIVLGRNALR 321 LILA+ LGG +G I L RN LR Sbjct: 448 QILILAIFLGGFIGTLIALLRNMLR 472 Score = 50.7 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 25/192 (13%), Positives = 58/192 (30%), Gaps = 6/192 (3%) Query: 8 VSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV 67 +S + + IDL +L L I + V++++ A+ YL ++ A++ Sbjct: 13 MSQNTNTEDTIDLKELFFALLAQWKLIALCVMLSLVCALLYLRTTPNTYSVDALVQVESS 72 Query: 68 GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLD------NQEEREKLTI 121 + E L R A LD + ++L Sbjct: 73 KGASAALLGDLSQVIDQKSPAQSEIEILKSRLVLGSVIQALNLDINISNPDDTFVQRLLG 132 Query: 122 EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDS 181 + + + P V++ K + +D + + + + + I + S Sbjct: 133 KQNYTTEYSPKGVTFQDGQKVFEIRKFEVPNEFLDKTLRLQFKGNQFELIDTKTDEVLLS 192 Query: 182 LRTQEVVAQEQK 193 + + Sbjct: 193 APMNQENQLSNR 204 >UniRef50_Q489D4 Tyrosine-protein kinase n=7 Tax=Gammaproteobacteria RepID=Q489D4_COLP3 Length = 759 Score = 81.9 bits (200), Expect = 2e-14, Method: Composition-based stats. Identities = 42/254 (16%), Positives = 91/254 (35%), Gaps = 34/254 (13%) Query: 100 SSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQ----YIQQV 155 + + L+ + + + +S+ +T E A+ L + Y+ + Sbjct: 228 TEFIVTRKDRLNTIVDLQTAIGASEKGKDSGIVNLSFQHETPEYAEGVLNKTAEIYVLRN 287 Query: 156 DDKVNQEL---EKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQV 212 D+ + E L+ + +K L+ S ++Q+ + I ++ ++ Sbjct: 288 VDRNSAEAKKSLDFLEVQLPEIKKQLESSEALFNDYQRDQQSVNIT-LETQGVLEQIVEL 346 Query: 213 TKPQIQQTGEDITQDTLFLLGSEALE---SMIKHEATRPLVFS---PNYYQTRQNLLDIE 266 + + + +F + I+ + + N + +Q LL + Sbjct: 347 DTKLQELDLKRLAMSRMFKRNHPNYQGIVEQIEAVQKQRDGLAGKISNLPEMQQKLLRLT 406 Query: 267 S-------------LKVDDLDIH------AYRYVMKPML-PIRRDSPKKAITLILAVLLG 306 KV +LDI R + + I+ PKKA+ +++A L+G Sbjct: 407 RDVEVGNEIYMMLLGKVQELDIVRAGTVGNVRIIDVAEVNTIKPVKPKKALIVVMATLVG 466 Query: 307 GMVGAGIVLGRNAL 320 GM+ IVL + AL Sbjct: 467 GMLAIAIVLVQKAL 480 Score = 63.8 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 42/133 (31%), Gaps = 3/133 (2%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 +R + N + N +IDL+ L L K+ I+ + + I + + +TA Sbjct: 12 VRNQQGNNTSNNAPANEIDLMALFGALIDRKIFIVSITTLFAVIGIAIAIFSTPIYKATA 71 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLT 120 +I V + G ++ + G + E + + S +TL Sbjct: 72 MI---QVEESGGSVPGLDDMAGMFESSSKSITEIELLKSRSVIGEAVDTLKLDIVAVPKL 128 Query: 121 IEPSVKNQQLPLT 133 Sbjct: 129 FPVIGGRSFRKFN 141 >UniRef50_Q6AS84 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AS84_DESPS Length = 440 Score = 81.5 bits (199), Expect = 3e-14, Method: Composition-based stats. Identities = 55/408 (13%), Positives = 112/408 (27%), Gaps = 98/408 (24%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTST---------AIITQ 64 ++IDL+ LL +W + ++ V+ +A L V + + A++ Sbjct: 31 QNDEIDLLGLLHDIWDQRKFLMKIVLAVTLVAFLVLLVLPSTYQARMDIGQADSVALVVP 90 Query: 65 PDVGQ--------IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER 116 GQ + + + + + L Q + Sbjct: 91 VATGQDLLTRSYRFGIVSQYLKSFDSWVTFRQGNREGAFTDEELQGLQGEFVGLSVQVQA 150 Query: 117 EKLTIEPSVKNQQLPLTVSYV-GQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGR 175 K I+ + L +SY G + +L ++ VD K +E++++ I Sbjct: 151 PKP-IKGKAVSDPSVLRISYRGGGDNTSVEQRLTGFVLFVDKKAAAYVEQEMEVVIQKAG 209 Query: 176 KNLQD---------------------------------SLRTQEVVAQEQKDLRIRQIQE 202 K + + + + + +R+ ++QE Sbjct: 210 KEINNKIGLLRHAASVDRGNRITRLLAQQKKDLEQVDMEISALKASVLRSRAVRLTRLQE 269 Query: 203 ALQYANQAQVTKPQIQQTGEDITQD------------TLFLLGSEALESMIKHE------ 244 A + P + ++LLG+E L I+ Sbjct: 270 NYAIAESLGIKLPTSMDNISERNVSNLKVMVTDQTAMPVYLLGTEVLAKRIQILREISDK 329 Query: 245 ----------------------------ATRPLVFSPNYYQTRQNLLDIESLKVDDLDIH 276 + L +++ D +H Sbjct: 330 KLYAQQLQPLLEKRELLLGSSELNGLRARKDDDAYIAELPGLLSRLQQLDAYTDDLQGVH 389 Query: 277 AYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 A + + PKKA+ L VLL + + L R AL+ Sbjct: 390 ALQVYSAATGSGHKIKPKKALILATTVLLSCFLAVALALLRTALQRRR 437 >UniRef50_B1KCB3 Exopolysaccharide transport protein family n=2 Tax=Burkholderia RepID=B1KCB3_BURCC Length = 740 Score = 81.5 bits (199), Expect = 3e-14, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 86/264 (32%), Gaps = 19/264 (7%) Query: 60 AIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKL 119 A ++ + K SD+ + +A+ E + Sbjct: 214 ATFVLRRYSTLSTIEELRQSLNIAEKGKQSDVIGVTLDGSDPVKTAMILNTLGSEYVHQN 273 Query: 120 TIEPSVKNQQLPLTVSYVGQTA----EGAQMKLAQY-IQQVDDKVNQELEKDLKDNIALG 174 S + ++ +S E ++ + Y +++E L+ ++ Sbjct: 274 ERRKSEEAERSISFLSAQLPELRAQLELSENRFNAYRATHGTLNLDEEATALLQRSVDAQ 333 Query: 175 RKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGS 234 + + E++A+ + + A AQ+ + + G + L + Sbjct: 334 SRLTTLKQKRDELMARFTPEHPAIR-------ALDAQLDTARAEIGGIEQRTRALPPVEQ 386 Query: 235 EALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPK 294 + L + L N T++ L +++ KV + R V +P PK Sbjct: 387 DVLRLQRDVQVGTEL--YTNLLNTQEQLRLVKAGKVGN-----VRLVDTAAVPEEPVRPK 439 Query: 295 KAITLILAVLLGGMVGAGIVLGRN 318 + + ++ + + G ++GA + R Sbjct: 440 RLLVIVGSTVFGLLIGATVAFSRR 463 >UniRef50_Q84GX2 Orf41 n=3 Tax=Photorhabdus RepID=Q84GX2_PHOLU Length = 715 Score = 81.5 bits (199), Expect = 3e-14, Method: Composition-based stats. Identities = 36/266 (13%), Positives = 91/266 (34%), Gaps = 12/266 (4%) Query: 57 TSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER 116 S ++ + +G I G A+ V + + L+ R + ++ +++ + Sbjct: 197 QSFTLVKRGQLGVIRGLQQALRVKEKGNSTGIISLEMEGDDR--ARIKSILDSIGKNYLQ 254 Query: 117 EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRK 176 + +T + L +++ + Q + +L + K + Sbjct: 255 QNVTRKMEEAESSLNFLKNHLPKVKIELNRSEELLNQYRQANESIDLSLEAKSALET-LV 313 Query: 177 NLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEA 236 ++ + K+ ++Q+ A A + K + + ++ L Sbjct: 314 QIEKQINELTF-----KEAELQQLYTKQHPAYVALLDKRKTLVDTKKELNQSIKRLPKT- 367 Query: 237 LESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKA 296 + I V Y Q ++ LK + R + + ++ PKK+ Sbjct: 368 -QQEILRLTRDVQVGQEIYVQLLNKQQELNILKAG--TVGNVRIIDEAIVENSAVKPKKS 424 Query: 297 ITLILAVLLGGMVGAGIVLGRNALRN 322 + ++ ++LG ++ AG+V R R Sbjct: 425 LIIVSMMVLGFILSAGLVCIRVMFRK 450 Score = 65.7 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 38/287 (13%), Positives = 92/287 (32%), Gaps = 21/287 (7%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 ++ S + D ++IDL LL L+ + I ++ + + Y +A + + +++ Sbjct: 2 TTSDKSSHTHTDSDEIDLGRLLSALFDYRWVIGGITLLFTVIGLCYSLIATPIYKANSLL 61 Query: 63 TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIE 122 ++ M + S E L R + LD Q + + Sbjct: 62 QVEKRSRVLPLIGDMADMLSGRPSDTSAELELLTSRMILGKTVKDLNLDVQVTADYFPVI 121 Query: 123 PSVKNQQLP-----LTVSYVGQTAEGAQMKLAQYIQ--------QVDDKVNQELEKDLKD 169 + + + + + E + Y+ D ++ K Sbjct: 122 GKGIARLRGMPKPDIVIKHFAVSPEYMNKGIKIYVDDSENYRLLFDDQVFLGQVNKVFDT 181 Query: 170 N-IALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQ---AQVTKPQIQQTGEDIT 225 + I L N+ S + + + IR +Q+AL+ + + +++ Sbjct: 182 DGINLLISNISASPGQSFTLVKRGQLGVIRGLQQALRVKEKGNSTGIISLEMEGDDRARI 241 Query: 226 QDTLFLLGSEALE----SMIKHEATRPLVFSPNYYQTRQNLLDIESL 268 + L +G L+ ++ + + + + L E L Sbjct: 242 KSILDSIGKNYLQQNVTRKMEEAESSLNFLKNHLPKVKIELNRSEEL 288 >UniRef50_A1WZL7 Lipopolysaccharide biosynthesis n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZL7_HALHL Length = 518 Score = 81.5 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 79/271 (29%), Gaps = 18/271 (6%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 Q+ ++I LIDL + L R K I +V + Y + +P + Sbjct: 25 QDPRDDEISLIDLWLVLMRRKWVIAGVFLVCVVGGAAYAY-----------LDEPGQRYV 73 Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQL 130 + + D E S + L + R +E SV + Sbjct: 74 SALEIGTYPTGSDDVATLEDRAEVATRLRESLVPLVRYELAQEHGRSFPGVEVSVPEEDA 133 Query: 131 PLT-VSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVA 189 P V E + + + Q++ D + + + + L + + Sbjct: 134 PGGFVFLQSTAPEDRADV----VSSIHQNLIQQIIDRHNDRLEVRQARFEARLESMDADL 189 Query: 190 QEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPL 249 +E + R + QEA + +++ G + L E+ +K Sbjct: 190 EELRAKRAERRQEAEHRVEAHKDRLERLESAGAQRKEQLTHALEEA--EAELKTLRENED 247 Query: 250 VFSPNYYQTRQNLLDIESLKVDDLDIHAYRY 280 R+ + + + D R Sbjct: 248 RRRRQLEHAREAAEEERDALIANRDRLQARI 278 Score = 46.9 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/185 (12%), Positives = 60/185 (32%), Gaps = 8/185 (4%) Query: 140 TAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQ 199 TAE Q +++ +E L + + ++ ++D+ R E A + + Sbjct: 329 TAELQQDLTN--VREELVLGLEEQRLGLDEQLQQNQQRIRDAERRLEEKAADLDEFEREF 386 Query: 200 IQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTR 259 +E A + +V++ + + + + A F + + Sbjct: 387 RRE--VAAAERRVSEKRSELRHFETEHQKQVHSAEREIAQRELRLARFEDDFEREIRRKK 444 Query: 260 QNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 Q + + + +L + P +D ++ + L+ +LG M+G Sbjct: 445 QEIRQYAA-QGQELRATEASALAVPSGSAGQDG---SLIVALSGVLGLMLGVFGAFLAEF 500 Query: 320 LRNYN 324 Sbjct: 501 NSRAR 505 >UniRef50_A0NNU3 Putative MPA1 family protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NNU3_9RHOB Length = 636 Score = 81.5 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 37/346 (10%), Positives = 96/346 (27%), Gaps = 45/346 (13%) Query: 20 LIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV------------ 67 + L R + + +++++ + A L V + K+ + + I +V Sbjct: 23 FFAMFKVLRRNWLWLTLAMLLGLGAAYQALQVIQPKFAARSTIILANVETRINPTETTIE 82 Query: 68 -GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVK 126 + + + ++ + L S F+ + + E + Sbjct: 83 NSDTSLIHVETEIDLLRSVEFARKVASELNLISDSYFNPYLSATETPVPNQDQQFEAVLV 142 Query: 127 NQQLPLTVSYVGQT---------------AEGAQMKLAQYIQQVDDKVNQELEKDLKD-- 169 TV G++ A+ A YI+ + + ++ + + Sbjct: 143 RMLDSYTVERRGESLALDIRVRHPDAGMAAQLANTLSKTYIESSLREKKEVVQSSISELR 202 Query: 170 -----------NIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQ 218 + L + ++ + ++ + A + ++ Sbjct: 203 DRIALLGGRLSEMEARLAALIRDNELDDTSLGDELRAELGRLTSIMSLAGDQNASSIRVN 262 Query: 219 QTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHA- 277 + + + L E Y + + +L+ + Sbjct: 263 EAELRLAEVEKKLEERTRAELTQSKLQRSLDADLARY---QALVERRNALETQVDFLQPD 319 Query: 278 YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 R V P++ +P + L L + G +VG VL R Sbjct: 320 ARQVTVASAPLKPATPNRIAILALGLAGGLIVGLAFVLLRELFDRR 365 >UniRef50_A5UI14 Putative uncharacterized protein n=2 Tax=Haemophilus influenzae RepID=A5UI14_HAEIG Length = 167 Score = 81.5 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 75/202 (37%), Gaps = 40/202 (19%) Query: 128 QQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEV 187 ++ L +++ +T + AQ L +Y+ V+ + ++ K L L+ S E Sbjct: 2 DKIALKITFSAETPKYAQSVLTEYVNFVNQYSLNQTNQEFKQGFNLRLDELRFSKEQIEE 61 Query: 188 VAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATR 247 E K +++ + AL A Sbjct: 62 NLTEAKKVQVENLTNALDIA-------------------------------------KNT 84 Query: 248 PLVFSPNYYQTRQNLLDIESLKVD---DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVL 304 P+V+ NYY T + L + L D+ Y Y+ P P+ +D+ K+A+ L + + Sbjct: 85 PVVYPANYYITDRQLFKLNKLASQLELVEDVKTYYYLSSPDYPMVKDNSKRALILAIGFI 144 Query: 305 LGGMVGAGIVLGRNALRNYNAK 326 +G ++ +L + ++ + Sbjct: 145 IGILLPTFFILLGSVIQTNKKQ 166 >UniRef50_Q1NU90 Lipopolysaccharide biosynthesis n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NU90_9DELT Length = 268 Score = 81.1 bits (198), Expect = 4e-14, Method: Composition-based stats. Identities = 39/320 (12%), Positives = 85/320 (26%), Gaps = 57/320 (17%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD 66 ++ Q ++I L+DL L K ++ + + Y + ++ + Sbjct: 2 SMQQQYVSEDEISLVDLWNTLVERKWMVLGVWGAILGGGVLYALLQPSEYQWRTV----- 56 Query: 67 VGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVK 126 + V+ G A D+ L + + V Sbjct: 57 --------VGVGVVDGSAVESTEDVVVRLQDEVV-----------------RADMAVEVS 91 Query: 127 NQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQE 186 + + V + + + + + +E + L QE Sbjct: 92 SSRRSSRVVLESVAPLEKADTVVAWHEGLVAGLLEEHGARFERQRRQLEAELAMLAEAQE 151 Query: 187 VVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEAT 246 + + + A +++ QQ D + L L + T Sbjct: 152 QMQRTE-----------------AMLSEQIEQQRSASDDGDPMGSLLLHLLLDRLAANQT 194 Query: 247 RPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLG 306 + + Q L V +PK+ + ++L+ +LG Sbjct: 195 QQHELMQAHGQQNLRLELAR----------PTEVVQSVQRSTGPVAPKRELIIVLSFVLG 244 Query: 307 GMVGAGIVLGRNALRNYNAK 326 M+G N LR + Sbjct: 245 AMLGMFAAFFANFLRAARQQ 264 >UniRef50_B7J3H5 Chain length determinant family protein n=2 Tax=Acidithiobacillus ferrooxidans RepID=B7J3H5_ACIF2 Length = 336 Score = 81.1 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 95/303 (31%), Gaps = 67/303 (22%) Query: 1 MRVENNNVSGQNH--------DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVA 52 M +E+N +GQ ++I L DL + + K + +S +V + LA Y+++A Sbjct: 63 MPIEDNAGAGQPQRANAAYTISEDEISLRDLWEIIAKRKWLVFLSTVVCLGLAAAYVSLA 122 Query: 53 KEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDN 112 + STA++ + + GQ L L+ ++ T + Sbjct: 123 PTIYESTAVV-------------QIGKVAGQPVDNGLQLASRLMNQY-----TPVNTEEA 164 Query: 113 QEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIA 172 Q++ KL K LT+ G++ + AQ L I + Sbjct: 165 QKQMPKLYAVTPDKADGSILTLEARGRSPQEAQQYLQGVI----------------QRLL 208 Query: 173 LGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLL 232 + + + + ++++ +L + + ++ T Sbjct: 209 AEDQQRYQQIVGTRQAQLTRLQAQYQRMRTSLNAKSGKGQADSTSTLLLLEQSRRTDA-- 266 Query: 233 GSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDS 292 + + ++E+ + + + PI + Sbjct: 267 ----------------------LTNIQAAIANMENALAPNNTSPTVQTLSPRYDPI-PVA 303 Query: 293 PKK 295 PK+ Sbjct: 304 PKR 306 >UniRef50_Q13NU9 Exopolysaccharide transport protein n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13NU9_BURXL Length = 746 Score = 80.8 bits (197), Expect = 6e-14, Method: Composition-based stats. Identities = 42/253 (16%), Positives = 85/253 (33%), Gaps = 12/253 (4%) Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQL 130 + ++ + L + +++ + E +T ++K+ + Sbjct: 233 SELQAVEDLQEDLKIEEKGKQSGILSVTLNGPNPKKTKSILDAVANEYVTQNVALKSAEA 292 Query: 131 PLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQ 190 T+ ++ + + +L + + N++ +L + L + DS + Q Sbjct: 293 QQTIEFLDRQLPQLKSQLDDAEVKYNRFRNEKGTVNLSEEAKLILQQSVDSNTALLELQQ 352 Query: 191 EQKDLRIRQIQEALQYA---NQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATR 247 + +LR R +E Q K Q + G I+ L AL M Sbjct: 353 RRLELRQRFTEEHPSVVALDKQIVAAKSQTESLGSRISGLPN--LEQGALRLMRDVAVDT 410 Query: 248 PLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGG 307 L + Q L +++ KV + R V PKKA+ + + V+LG Sbjct: 411 DL--YTGLLNSAQQLRVLKAGKVGN-----VRVVDFAQDSEEPIKPKKALVIAMGVVLGA 463 Query: 308 MVGAGIVLGRNAL 320 + G R A Sbjct: 464 IFGVTTAFVRKAF 476 Score = 49.6 bits (116), Expect = 1e-04, Method: Composition-based stats. Identities = 18/142 (12%), Positives = 39/142 (27%), Gaps = 2/142 (1%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M + + D L ++ G+ I + IAL++ Y A+ + + Sbjct: 1 MAANLPASPDATRANDDVSFADYLSLIYEGRWLIAGIMAFVIALSVIYAFGARPIYDANI 60 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLT 120 +I D ++ N ++ A + + L+ R + +L E Sbjct: 61 LIQVED-SDLSEKNLLGDLAPLLDAKSATTAEIELL-RSRLVVGSAVSSLKLFIEATPRH 118 Query: 121 IEPSVKNQQLPLTVSYVGQTAE 142 Sbjct: 119 FPIIGGWVTNRYESRMSAAEPA 140 >UniRef50_B2AHI0 Tyrosine-protein kinase n=5 Tax=Cupriavidus RepID=B2AHI0_CUPTR Length = 749 Score = 79.2 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 75/239 (31%), Gaps = 33/239 (13%) Query: 114 EEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQ----YIQQVDDKVNQELEKDLKD 169 + + + Q + V+ G +AE L + Y++Q + E EK L Sbjct: 240 ADLQSQLMITERGKQSGVIGVALEGTSAEKTAAILNEIGNEYVEQNLRRKAAEAEKSL-A 298 Query: 170 NIALGRKNLQDSLRTQEVVAQEQKDLR-------IRQIQEALQYANQAQVTK-------- 214 + L+ L + E ++ R ++ A A Q ++ Sbjct: 299 FLEAQLPQLKQQLESAESRYNAMRNQRGTIDLNEESRLVLAQSVAAQTKLADLRQRRQEL 358 Query: 215 --------PQIQQTGEDITQ-DTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDI 265 P I+ + I + ++ + E + T + Sbjct: 359 IARFTPNHPAIEILDKQIADVNAEIGTVGGKIQRLPDIEQNVLRLMRDVRVSTEMYQSLL 418 Query: 266 ESLK----VDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 ++ V I R V +PIR P + + +VLLG + G +V+ R Sbjct: 419 NDVQQLRLVKASKIGTARLVDPAEVPIRPVKPNRKLIAAASVLLGLLAGTAVVVLRRLF 477 >UniRef50_A6UI93 Lipopolysaccharide biosynthesis protein n=2 Tax=Sinorhizobium RepID=A6UI93_SINMW Length = 662 Score = 78.8 bits (192), Expect = 2e-13, Method: Composition-based stats. Identities = 48/314 (15%), Positives = 98/314 (31%), Gaps = 30/314 (9%) Query: 20 LIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII------TQPDVGQIAGY 73 L DL + R + + V L+ + +T+++ + +P A Sbjct: 33 LFDLWAIVKRRFWFLASIIFVCTLLSAIASFSIPKSYTASSEVVLERKDVRPFATDAALT 92 Query: 74 NNAMNVIYGQAAPKVSDLQE---TLIGRFSSA----FSALAETLDNQEEREKLTIEPSVK 126 + + + V ++ ++ R F+ A D ++ L + Sbjct: 93 SIDRDRSAAETEMDVLQSRKFAGRIVDRLELVNDPTFNPYAPGGDKSSDQGLLRYVQDLI 152 Query: 127 NQQLPLT-------VSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQ 179 + T + A A + + + + + + + +A N Sbjct: 153 GVRRASTSARVIPDIKTQRDHAISALLSQFEVSRTGESLAVRLIVTNQNPKLAQQIANTI 212 Query: 180 DSLRTQEVVAQEQKDLRIRQIQEALQYANQ-AQVTKPQIQQTGEDITQDTLFLLGSEA-L 237 SL E + ++D R+ Q AL A + + Q + + LL S A L Sbjct: 213 ASL-YVEASLEFKQDERVADKQRALNTGGAVAFLRQSMTQPLLITLRNEEARLLQSRAEL 271 Query: 238 ESMIKHEATRPLVFSPNYYQTRQNLLD-----IESLKVDDLDIHAYRYVMKPMLPIRRDS 292 + + + R + D + L+ + L + R V LP Sbjct: 272 AAKYGKNHPQMIDADSQIAGIRSMIEDEVQRILSDLEAESLK-PSARIVSTAELPNSPSF 330 Query: 293 PKKAITLILAVLLG 306 PK + + A L G Sbjct: 331 PKPGLIIP-AALAG 343 >UniRef50_D1CAL1 Capsular exopolysaccharide family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1CAL1_SPHTD Length = 564 Score = 78.8 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 42/303 (13%), Positives = 89/303 (29%), Gaps = 37/303 (12%) Query: 18 IDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAM 77 + I++L + R I+ ++A A A G + + A + N Sbjct: 4 LTFIEILGLIRRWWWVFIVCPLLAAAAAYGVSRALTPIYRAEATLFIDQRETTGSLNVGD 63 Query: 78 NVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYV 137 + A S L + R + +LD E I + + ++ Sbjct: 64 IQAAQELAATYSRL---VTARPVLEQTINRLSLDTTPEDLVENISVTRIGSTQLVEIAVE 120 Query: 138 GQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRI 197 A Q ++ + +++ +I Sbjct: 121 DPDPRQAAQIANTLAQVFIEETH-------------------AQEDAATWSGRDELRRQI 161 Query: 198 RQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQ 257 ++Q+ +I+ T I + A+++ ++ T+ Y Sbjct: 162 EEVQQ-------------RIEDTSSRIAELQQSGASGTAVQTELRTLQTQLSQDQALYAS 208 Query: 258 TRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGR 317 + +E R V + + P + P+ + LA LG ++ AG+VL Sbjct: 209 LLEAQQRMELAAAQSATQ--IRVVEQAVPPTKFVKPRILVNTALAGALGIVLAAGLVLVA 266 Query: 318 NAL 320 L Sbjct: 267 GYL 269 >UniRef50_B0VJW4 Putative Non-specific protein-tyrosine kinase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJW4_9BACT Length = 762 Score = 78.5 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 35/273 (12%), Positives = 87/273 (31%), Gaps = 19/273 (6%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD 66 N + Q E+I L D + + + +I+ +VA+ + Y A + ++++ I D Sbjct: 4 NENNQLPVQEEIKLSDYFRIILQYRYLVILVFLVALVATVYYTARLPKIYSASTRILLED 63 Query: 67 VGQIAGY----------NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER 116 + + N N I + + +L ++ ++ + + Sbjct: 64 ANKQSDLMFLSTGGLGKNTLNNQIELIHSKPIMNLAWEIMKKYPD-WDTFPASQAADPAS 122 Query: 117 EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQE-------LEKDLKD 169 ++ K + LT+S+ A + + + + Q + + L+ Sbjct: 123 TLGRMKVESKRETDVLTISFESTNPTEAMAAVNSIAEAIQQQNTQYARLEFTTIREFLET 182 Query: 170 NIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTL 229 + + LQ S K ++ + L + + T + + +L Sbjct: 183 QLDAISRRLQSSENDLREFKNLNKLTQLSEETNKLIEQASDLEAEYEAALTDQAVKAKSL 242 Query: 230 FLLGSEALESMIKHEATRPLVFSPNYYQTRQNL 262 LL + L+ + Y + Sbjct: 243 DLLNRQ-LQEQDSLLVNVDNIIKTPYINELRKQ 274 Score = 55.3 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 32/257 (12%), Positives = 95/257 (36%), Gaps = 7/257 (2%) Query: 66 DVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV 125 ++ ++ + N + QA+ ++ + L A A + L N++ +E+ ++ +V Sbjct: 203 NLNKLTQLSEETNKLIEQASDLEAEYEAALTD---QAVKAKSLDLLNRQLQEQDSLLVNV 259 Query: 126 KNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQ 185 N ++ + + Q + + + + + ++ + L I ++ L +R Sbjct: 260 DNIIKTPYINELRKQIVDTQSLITKLVTKNEYPLDHPQIQLLYREIENAKEKLDQEIRKL 319 Query: 186 EVVAQEQKDLRIRQ--IQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKH 243 +A L R + +Q + ++ + ++ + L+ E + Sbjct: 320 VNLAVTDDPLATRSDLLTRIVQANIELEMARAKVDGLEQTKEMYNQRLIAIPNTELELAR 379 Query: 244 EATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAV 303 ++ + + D + + I R + P P+ ++ +++ V Sbjct: 380 LTRNLMLDEKIHSMMMEKYEDAKI--AEQAKIGNIRIIDYAERPTVPIKPRVSMNILVGV 437 Query: 304 LLGGMVGAGIVLGRNAL 320 ++G +G G ++L Sbjct: 438 IIGLGLGIGTAFLVHSL 454 >UniRef50_A4BR88 Putative uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BR88_9GAMM Length = 343 Score = 78.1 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 44/326 (13%), Positives = 98/326 (30%), Gaps = 15/326 (4%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN 74 ++I LIDL + L R K TI +++ + L + ++ V ++ I +V Sbjct: 10 DDEISLIDLWIILVRRKWTIAGVLLLCVLLGLAWVLVKPPRYQYETAIQIGEVLSGDALQ 69 Query: 75 NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTV 134 V A + + + ++ + E L I S + + Sbjct: 70 PIEPVGAVLAKIQETYIPLARARLLAADAQGGFKLKARSPEGSALLIVVSGEGVPAQRST 129 Query: 135 SYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKD 194 Q+++ + + E E++ ++ ++ + Sbjct: 130 YLKLLHDVLQQIQVDLSPRFKAARQATEREREGTESRLQQLTAEAKLVQGELERLGSWNQ 189 Query: 195 LRIRQIQ---EALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRP--- 248 + R++Q LQ + + + + + + L+ I + Sbjct: 190 VVERRLQIVRTDLQTLREQRNGLLKRGLSDSADMRLIVLNGDIRTLQETIADLQEQLGKW 249 Query: 249 -----LVFSPNYYQTR----QNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITL 299 Q + L ++ ++ + R V+ P + L Sbjct: 250 IPAQRDGILSRLKQNQVDQSTQQLRMQEIEARAAALQPTRAVLVPQRLPEPIGTGPVVIL 309 Query: 300 ILAVLLGGMVGAGIVLGRNALRNYNA 325 LA +LG M+G L NA Sbjct: 310 ALAGVLGLMLGVFAAFFTEFLARANA 335 >UniRef50_B1M553 Lipopolysaccharide biosynthesis protein n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1M553_METRJ Length = 554 Score = 78.1 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 38/300 (12%), Positives = 83/300 (27%), Gaps = 32/300 (10%) Query: 24 LVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQ 83 L R K+ + + V+ I A Y A +T+TA++ + ++ ++ Sbjct: 40 LKAARRHKLAVAVWVVFCIGCAALYTVTATPSYTATAVLLLEPRRPVGAGSSEGALMPSL 99 Query: 84 AAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEG 143 + + L A + L N E E + +S + Sbjct: 100 DVGRAESELQVLRSERLLANVFNSLQLANNPEFGPPEAESPREPAPSASELSGLRTAPPS 159 Query: 144 AQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEA 203 L Q ++ + + R + R+ + Sbjct: 160 TAAILQ-----------QRKFENFAERFTVRRVGQSYVVEVSYTSRDPNLARRVANAAVS 208 Query: 204 LQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLL 263 + G+E L+ + A++ + + Sbjct: 209 AYLLQSIAAKADAAKN-------------GAEFLQGRVNALASQARSAAAAVTE-----G 250 Query: 264 DIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 + D D R + + P++ +P+K + L L ++G + G V A Sbjct: 251 TLPDAPTPDADA---RVIGAALQPLKPSAPRKTLILGLGAMIGLVGGLLAVALLQAFDRR 307 >UniRef50_A0NMI4 Probable succinoglycan transport protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0NMI4_9RHOB Length = 832 Score = 78.1 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 89/273 (32%), Gaps = 16/273 (5%) Query: 57 TSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER 116 ++A + V A + A + I AET + Sbjct: 201 QASAALEPQIVELRREVQAARQAVSDFRARADLLIGADNIPLNQQQL---AETSTAYSDA 257 Query: 117 EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDN------ 170 + E K + ++ G + E A L + Q + E++ ++ + Sbjct: 258 QSAKAESQAKADLIRELLN-SGASLETASDVLNSALIQRLRERQVEIQSNIAELSITLLP 316 Query: 171 IALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLF 230 K LQ L + + + ++ ++ + A+Q + + GE + + Sbjct: 317 NHPQLKALQSQLGDYDRQLRSEARKILQGLENDAKVADQ------RAKALGERLDELKTA 370 Query: 231 LLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRR 290 S A ++ + + Q + + +S + R + + +P+ Sbjct: 371 AAKSNADQARLAELERGANAKAAQLDQLLLSYQEADSRLRAQVLPADARIISRASVPVEP 430 Query: 291 DSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 SPK + I+A L+ ++G VL R L Sbjct: 431 ASPKILASTIIAALVTFILGCAFVLMREFLNGN 463 Score = 44.2 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 28/304 (9%), Positives = 81/304 (26%), Gaps = 28/304 (9%) Query: 7 NVSGQNHDPEQ--IDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 N Q H + +DL LL + R ++ + L K+ A + Sbjct: 2 NAERQTHSEDDMALDLGGLLRTIARSLGWLLPLTLFVTVAVFLGLQFVAPKYKGEARLII 61 Query: 65 PDVGQI----------AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQE 114 + ++ V+ K +DL + + + A + D+ Sbjct: 62 ESTDNLPGASRGQEEERALLDSEGVVSQVQLLKSADLARRVASKLNLAAIPEFDANDDGS 121 Query: 115 EREKLTIEPSVKNQQLP----------LTVSYVGQTAEGAQMKLAQYIQQ---VDDKVNQ 161 L + + + EG+++ Y + + KV Sbjct: 122 LVNLLLSLVGLGTETEGNSQEERVLKHYYKNLEIYRLEGSRVIAVDYTAESPVLAAKVAN 181 Query: 162 ELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQ---AQVTKPQIQ 218 + + + ++ + + ++ ++A+ + I Sbjct: 182 TIVDEYLSVQSSAKRQTTEQASAALEPQIVELRREVQAARQAVSDFRARADLLIGADNIP 241 Query: 219 QTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAY 278 + + + + +++ ++ + +A + + S + L Sbjct: 242 LNQQQLAETSTAYSDAQSAKAESQAKADLIRELLNSGASLETASDVLNSALIQRLRERQV 301 Query: 279 RYVM 282 Sbjct: 302 EIQS 305 >UniRef50_A9W3V2 Lipopolysaccharide biosynthesis protein n=6 Tax=Alphaproteobacteria RepID=A9W3V2_METEP Length = 804 Score = 77.7 bits (189), Expect = 5e-13, Method: Composition-based stats. Identities = 26/210 (12%), Positives = 69/210 (32%), Gaps = 8/210 (3%) Query: 112 NQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNI 171 + + LT + + ++ ++ ++ + LE Sbjct: 272 ARTIQADLTARAKLLKDMIKEGRAFEIPDVANNELIRRTVESRMAMRAQLALESRTLLPA 331 Query: 172 ALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQ-AQVTKPQIQQTGEDITQDTLF 230 K L ++ E + + +R ++ + A + + ++ + + + Sbjct: 332 HPRIKELTAQVQDLENQIKAAAERVVRTLENDAKIAGARVESLRAAVEGQQDVVAKGNTS 391 Query: 231 LLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRR 290 + ALE K + + + Y + ++ R V + ++P Sbjct: 392 EVELRALEREAKSQREQLESYLARYREAAAR-------DAENASPANARVVSRAIVPDLP 444 Query: 291 DSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 PKK + A +L ++ + V+GR+ L Sbjct: 445 SFPKKLPIVAFATMLAFLLASAGVIGRHLL 474 >UniRef50_A6F1J4 Lipopolysaccharide biosynthesis n=1 Tax=Marinobacter algicola DG893 RepID=A6F1J4_9ALTE Length = 252 Score = 77.7 bits (189), Expect = 5e-13, Method: Composition-based stats. Identities = 37/318 (11%), Positives = 78/318 (24%), Gaps = 76/318 (23%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + + + ++I L+DL + + + I I Y EK+ + Sbjct: 1 MVESPQGQRPRYDDEISLVDLAATFLKRRRVFYVVFIAITLAGIAYAIFTPEKYEYVTLA 60 Query: 63 TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIE 122 + VI + V DLQ + + Sbjct: 61 KLAEKSGGEYIEEPSTVIAELDSLWVPDLQAKFHAENNRSLPFG---------------- 104 Query: 123 PSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSL 182 E + ++ E + + L + L Sbjct: 105 -------------VTANNPEDTGLV----------RIVSEASASAGTMVEQAHRELVERL 141 Query: 183 RTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIK 242 R+Q+ A + + +L+S I+ Sbjct: 142 RSQQEQAVSALRKSLERQ---------------------------------IVSLDSTIE 168 Query: 243 HEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILA 302 + L SL+ D + + ++ P +++ ++LA Sbjct: 169 MLEGGQDTGDAIASAVEKQL----SLEADLESLAPFEALVVSRQSGEHTGPARSLVIVLA 224 Query: 303 VLLGGMVGAGIVLGRNAL 320 LLG M G + + Sbjct: 225 GLLGLMAGVFLAFFAEFI 242 >UniRef50_B2PVB4 Putative uncharacterized protein n=3 Tax=Providencia RepID=B2PVB4_PROST Length = 693 Score = 77.7 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 82/258 (31%), Gaps = 6/258 (2%) Query: 66 DVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV 125 + + A Y+ N+ +V + A A + N + + Sbjct: 192 TLSKNARYSTIENLRNTLTIAEVGKSTGIINLAIKGADKAENVQILNSIIQNYVDQNTER 251 Query: 126 KNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQ 185 K + T+ ++ + + KL Y Q++ + DL + Sbjct: 252 KKEVTNNTLLFLDEYLPKVKTKLDNYENQLNAFRKKNESIDLSLEAKSALDSALQVEEKL 311 Query: 186 EVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEA 245 + K++ I+Q+ A Q+ + K Q ++ + L + + I Sbjct: 312 NEL--TFKEVEIQQLYTRNHPAYQSLLDKRQQLLREKEKISKNIQKLPNT--QQQIVRLT 367 Query: 246 TRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLL 305 Y Q ++ L + R + +PKK + ++LA +L Sbjct: 368 RDVESEQAIYNQLVAKQQELSVL--NSGITADVRIIDSAESQPNAIAPKKTLIVVLATIL 425 Query: 306 GGMVGAGIVLGRNALRNY 323 G +VG V+ R N Sbjct: 426 GFIVGCAYVIAREFFNNK 443 Score = 68.1 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 33/278 (11%), Positives = 87/278 (31%), Gaps = 16/278 (5%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQP 65 N + ++IDL+ L L + I + I + Y +A + + A + Sbjct: 2 NTTKTSSAASDEIDLLALFKVLKSSYLKIGFFTLFFIVIGAAYSFLATPIYQANATLQYD 61 Query: 66 DVGQIAGYNNAMNV--IYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEP 123 + Q++ + +V + E + R + LD Sbjct: 62 KMSQVSLLDQMSDVMPFANNNNSQADSEIEVIKSRMVLGKTVADLNLDIHTAPAGFFDRL 121 Query: 124 SVKNQQLPLTVSYVGQTAEGAQMKL-----AQYIQQVDDKVNQELEKDL--KDNIALGRK 176 + +++ + + G + +Y +D++ + +L +D I+L Sbjct: 122 WGDKASVAISLYSLPEHLIGEPAIVTYLGENRYALHIDNQTFEGKVGELLKQDEISLLVS 181 Query: 177 NLQDSLRTQEVVAQEQKDLRIRQIQEALQYA---NQAQVTKPQIQQTGEDITQDTLFLLG 233 ++ + + +++ + I ++ L A + I+ + L + Sbjct: 182 SINAEVGQEFTLSKNARYSTIENLRNTLTIAEVGKSTGIINLAIKGADKAENVQILNSII 241 Query: 234 SEAL----ESMIKHEATRPLVFSPNYYQTRQNLLDIES 267 + E + L + + L + E+ Sbjct: 242 QNYVDQNTERKKEVTNNTLLFLDEYLPKVKTKLDNYEN 279 >UniRef50_C6BDG9 Lipopolysaccharide biosynthesis protein n=1 Tax=Ralstonia pickettii 12D RepID=C6BDG9_RALP1 Length = 266 Score = 77.3 bits (188), Expect = 6e-13, Method: Composition-based stats. Identities = 38/301 (12%), Positives = 84/301 (27%), Gaps = 36/301 (11%) Query: 21 IDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVI 80 + L + + I+++ V +A+ + KWT + V +G + + Sbjct: 1 MALQSFVAKSAKVILLTTAVGAVIAVALFSFQHPKWTGRMTVQIGQVANPSGAADGKLIE 60 Query: 81 YGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQT 140 + + E+ + ++ + + + G + Sbjct: 61 SQSTLTDRCNTPTFRSEILKNLGLPAPESENEDSALIFDSLRATPAKGPDLINIQVSGSS 120 Query: 141 AEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQI 200 E A L + + + ++ + + L +L E Q Sbjct: 121 REQAFKALETAFNALATQ-HDKVYAPAVNRMKAESAELSANLSEAERDYQRAY------- 172 Query: 201 QEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQ 260 + T L + + + I Q +Q Sbjct: 173 -----------------AALNSSTREPTAQNLFTTNVVAQIGIRIQL-------LRQAKQ 208 Query: 261 NLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 L D + D+ + R + +P+R SP K + +G ++G I L R Sbjct: 209 RLDD----SLADVRTYPTRVLGGYYVPLRPSSPGKTLYGAAGACIGLILGFLIALARKMR 264 Query: 321 R 321 R Sbjct: 265 R 265 >UniRef50_UPI00016A48EE exopolysaccharide transport protein family n=1 Tax=Burkholderia ubonensis Bu RepID=UPI00016A48EE Length = 744 Score = 77.3 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 87/268 (32%), Gaps = 17/268 (6%) Query: 57 TSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDL-QETLIGRFSSAFSALAETLDNQEE 115 T+ A ++ + + Q K S + TL SA+ + +Q Sbjct: 217 TAGAGFDLVRGSRMDTIEDLRKQLRIQELGKQSGVISATLRSDDPVQLSAILNEIGDQYV 276 Query: 116 REKLTIEPSVKNQQLPLTVSYV---GQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIA 172 R+ + + + L S + E A+ +L Y E K + Sbjct: 277 RQNVDRKAAQAENSLQFLASQEPKMKRDLEQAENRLNDYRNTHKVLDLTEEGKSILAQSL 336 Query: 173 LGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLL 232 + + ++ + + + Q A I + + I + Sbjct: 337 DAEQQHFTLTQKRQELLTRFGPMHPGVVAIDEQIAGTLGY----IGELTDQIKRMPTAQR 392 Query: 233 GSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDS 292 +A+ + L Y R N+ + LK + + R V LP R Sbjct: 393 --DAIRLQRDVQVNTDL-----YLALRNNIEQLRLLKAGK--VGSVRLVDAASLPERAVF 443 Query: 293 PKKAITLILAVLLGGMVGAGIVLGRNAL 320 PKK I +++A LLG VGAG R+ L Sbjct: 444 PKKTIVVVVATLLGLFVGAGAAFVRDQL 471 Score = 54.6 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 35/111 (31%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M N + + ++DL +L L ++ I V ++ Y + + S Sbjct: 1 MTQSNQHADVNVVETTELDLASVLDILLDNRLLIAAIATVFTFISGLYALLVTPIYESNI 60 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLD 111 ++ D + + + + K + E I S + L Sbjct: 61 LVQIEDSPDASAAKDLLGTLSTMFDVKSTADAEIQILGSRLVVSRAVDKLK 111 >UniRef50_B2TEB6 Exopolysaccharide transport protein family n=5 Tax=Burkholderia RepID=B2TEB6_BURPP Length = 740 Score = 76.9 bits (187), Expect = 9e-13, Method: Composition-based stats. Identities = 55/298 (18%), Positives = 105/298 (35%), Gaps = 33/298 (11%) Query: 54 EKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQ 113 ++ + DV + G N G VS L +F + + L+ Sbjct: 173 NRYRLSGSDLNADVVGVVGVPLLANTSSGPIKLLVSRLSSRENAQFELRRFSRIQVLEQ- 231 Query: 114 EEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQ----YIQQVDDK---VNQELEKD 166 R+ L I K+Q + V+Y Q A L + Y+ Q D+ ++ Sbjct: 232 -LRKDLVITEMGKDQSGVIGVTYDDQDPARAAAVLNKIAENYVAQNADRKAAAAEKSLVF 290 Query: 167 LKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEA-LQYANQAQVTKPQIQQTGEDIT 225 LK + ++L+ + K + + + +A L A +AQ + Q++Q +++ Sbjct: 291 LKSQLPDVERSLRLAEDRLNAYQNRHKVVDLSEQAKAVLGQAVEAQSSLFQLEQKRKELA 350 Query: 226 QDTLFLLGSE-ALESMIKHEATRPLVFSPNYY------------------QTRQNLLDIE 266 + AL+ I F+ + QT + + Sbjct: 351 TIYSAQYPAVLALDQQIAAARAHIDNFNESIQRLPDDQQNIVRLNRDVTVQTSLYVGLLN 410 Query: 267 SLK----VDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 S++ I R + ++ + PKKA+ + LA ++G G G L R+ L Sbjct: 411 SVQQLQLATASKIGNVRVIDHALVADKPTKPKKALVIALAAVIGLFGGIGFALARSTL 468 Score = 66.1 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 34/92 (36%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 + D ++ID+ L+ +++ K II IV + + Y +A + + D +A Sbjct: 6 SRDEDEIDIRALIDVIFKNKKLIIAVTIVCTLIGVMYAFLATPIYRGDITVQVEDNSDLA 65 Query: 72 GYNNAMNVIYGQAAPKVSDLQETLIGRFSSAF 103 G + + + + + S Sbjct: 66 GAAAGNLMSGLTSLFDIKSTDDGEMQILDSRL 97 >UniRef50_B6B6U1 Succinoglycan biosynthesis transport protein ExoP, putative n=2 Tax=Rhodobacterales RepID=B6B6U1_9RHOB Length = 714 Score = 76.9 bits (187), Expect = 9e-13, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 86/261 (32%), Gaps = 5/261 (1%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAK-EKWTSTAIITQPDVGQ 69 + D + IDL L LWRGK +++ AI L Y VA ++TS+A++ + Sbjct: 20 ETPDEDVIDLGALFATLWRGKWIMLLVTAAAIFLGGIYAFVAAVPQYTSSAVVMLETKQE 79 Query: 70 IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQ 129 ++ +V+ E L R + L E +EPS Sbjct: 80 SVVDLRSVVSGLSGDYTEVNSELEVLQSRGLMSKVVDKLNLMGDPEFNGTLVEPSALG-S 138 Query: 130 LPLTVSYVGQTAEGAQMKLAQYIQQVDDK-VNQELEKDLKDNIALGRKNLQDSLRTQEVV 188 L TV ++ G Q + +++ ++ + + L+ I++ Sbjct: 139 LVWTVKSQIKSLLGLQKPAEEMPEELVEQLIRDSVVSTLQSKISVRNVPYTLVFEVTAET 198 Query: 189 AQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLG--SEALESMIKHEAT 246 +K I L NQ +V +Q +T L A + A Sbjct: 199 ESARKSALIADTIVDLYILNQIEVKFDATEQATTWLTGRVAELKAELETAEAKANEFNAG 258 Query: 247 RPLVFSPNYYQTRQNLLDIES 267 LV L D+ Sbjct: 259 TALVSPEALQAQEVQLKDLRE 279 Score = 65.4 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 70/204 (34%), Gaps = 16/204 (7%) Query: 135 SYVGQTAEGAQMKLAQYIQQVDD-KVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQK 193 + TA + L Q+ D + L K ++ + L + ++ Q Sbjct: 254 EFNAGTALVSPEALQAQEVQLKDLRERIALAKTAEETAQVRYGALHAAESREDQAEISQD 313 Query: 194 DLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSP 253 R + +A A A +Q + L + + S Sbjct: 314 RQLQRLLAQADTAAGGAAFDTAFQRQLARAALDARRATQQLQTLVQSEAELSRQTARQSE 373 Query: 254 NYYQTRQN--------------LLDIESLKVDD-LDIHAYRYVMKPMLPIRRDSPKKAIT 298 + +Q L ++ + + R + + ++P+R +PKK++ Sbjct: 374 DLITLQQLTREAEAVRLLYEYFLTRLKETSAQEGIQKADSRLLSRAVIPLRPSAPKKSLI 433 Query: 299 LILAVLLGGMVGAGIVLGRNALRN 322 L ++ +LG MVGAGIVL A R Sbjct: 434 LAMSGILGLMVGAGIVLLMEARRR 457 >UniRef50_B3ELK8 Lipopolysaccharide biosynthesis protein n=1 Tax=Chlorobium phaeobacteroides BS1 RepID=B3ELK8_CHLPB Length = 334 Score = 76.9 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 37/330 (11%), Positives = 84/330 (25%), Gaps = 35/330 (10%) Query: 1 MRVENNNVSGQNHDPE-----QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEK 55 MR + + + + + L D+ + + ++ + A Y A+ Sbjct: 15 MRESSKSGRDSSQPVQGEKGVETSLDDIRAVIVSNRWIVVGVTLFVTLSAALYALFAQPV 74 Query: 56 WTSTAIITQPDVGQIAGYNNAMNV-IYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQE 114 + + A++ + K L ++ S + A Sbjct: 75 YLTGALVRFDGKEGDRALFMLHSQTFLEDIIRKEELLPLLFSDQWDSVHHSWASGKGEIP 134 Query: 115 EREK-------LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDL 167 + EK I K+ L + A + + + +++ V +E Sbjct: 135 DPEKGAVVLAEKLIIKKRKDLFNLLFIGMEHPDPYAAADLINRVLIGLNEYVRKEALAKA 194 Query: 168 KDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQD 227 A + L + R + EA + + + Sbjct: 195 LLLQAYADRQLY--------IHDSTLADRFASLGEADAVRLSGKNGDRKAASEVSGFLRS 246 Query: 228 TLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLP 287 L L S + + + + D+ A + Sbjct: 247 QLILSSSLEARARLMAKKQESDDVI-----------MRADIHADE---FALKIYDMATAY 292 Query: 288 IRRDSPKKAITLILAVLLGGMVGAGIVLGR 317 + P K+ ++L + G G I R Sbjct: 293 EKNAKPGKSAVIVLGFIFGMFSGLCIAFVR 322 >UniRef50_A3W156 Putative succinoglycan biosynthesis transport protein ExoP n=1 Tax=Roseovarius sp. 217 RepID=A3W156_9RHOB Length = 632 Score = 76.5 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 39/329 (11%), Positives = 95/329 (28%), Gaps = 19/329 (5%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 + ++ L DLL R + +++ + + L + + S A + Sbjct: 17 PDTLNRSPAQDRTTTLGDLLAAARRQRWPLMLCTALGLGLGLVKHMTTPPLYYSAATVLV 76 Query: 65 PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKL--TIE 122 +G + + + + + L + A +L ++ Sbjct: 77 DVRMDESGGEITPTTPFLRNDTSLLNEIQVLRSLRLAEEVARRLSLHETPIFLNPPESLA 136 Query: 123 PSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSL 182 S+ + L + +G E + + L+ ++ + R ++ Sbjct: 137 RSMLSAVLDAVKNVIGADPETPPPL----PGSSEASAIKRAALILQRDVGIDRIGQSFTI 192 Query: 183 RTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDT-LFLLGSEALESMI 241 + + I A + E + SEA++ Sbjct: 193 DISYIGPEPALAAAIVNTYAESYLAAHLNAKMEVTARMAEWMQARIGELQRESEAIQVRA 252 Query: 242 KHEATR---PLVFSPNYYQTRQNLLDIESLKVDDLDIHAY---------RYVMKPMLPIR 289 + + Q NL ++ ++ R + + +P + Sbjct: 253 EALRAQTPPDTKALKALAQRAANLETLQQTLSSRYEMVTIEGSYPVTNGRILSEAAVPKK 312 Query: 290 RDSPKKAITLILAVLLGGMVGAGIVLGRN 318 D PK ++ +A +LG M+G I + R Sbjct: 313 PDLPKLWQSVAIATILGFMIGFVIAILRE 341 >UniRef50_Q15NN8 Protein-tyrosine kinase n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15NN8_PSEA6 Length = 708 Score = 76.5 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 37/282 (13%), Positives = 84/282 (29%), Gaps = 33/282 (11%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII----------T 63 +D+ D+L LWR K III+ + +L Y+ + + +++I+ Sbjct: 11 QERSLDIFDILTFLWRKKFRIIITAGLLASLGAYYVIHLPKIYVASSILLLSAKDSGLTL 70 Query: 64 QPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREK----- 118 + I + Y + +Q + ++ D EK Sbjct: 71 PSSLSAITSGEDTRQDTYIEFMRSRQFVQTVVDDLALYNLHEYQQSTDGGYVSEKDYATT 130 Query: 119 ---LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLA-------QYIQQVDDKVNQELEKDLK 168 S + L ++ T A Y ++ + + L Sbjct: 131 KLLKQFSVSKLSNTDMLKITVESLTPSSAAEIANHIGPAFFAYYALINRQKADSKSQWLN 190 Query: 169 DNIALGRKNLQDSLRTQEVVAQEQKDLRIRQI------QEALQYANQAQVTKPQIQQTGE 222 D + + +L S ++ + + + + A + + + + + G Sbjct: 191 DQLNELKTSLSQSEERLLTFLRDNELVDVESQVDLAKSEIAGLISQKIHIDRAVAESQGS 250 Query: 223 DITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLD 264 + T+ + L I L+ + +Q LL Sbjct: 251 MVQLATISGGQQDYL--QIPAIQNNALIRDLRIRRGQQQLLM 290 Score = 42.2 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 1/87 (1%) Query: 240 MIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITL 299 I Y L + E LK D D + V P PK + + Sbjct: 363 QISRMQREIESTQHLYEMFLSRLQETEILK-DLDDGDDFAIVDSASEPTFPAKPKVVMGI 421 Query: 300 ILAVLLGGMVGAGIVLGRNALRNYNAK 326 L+V+ + G L + + + + Sbjct: 422 ALSVIFSCVFSFGFWLILHLISDKYTR 448 >UniRef50_B7RJK1 Protein-tyrosine kinase, putative n=3 Tax=Rhodobacteraceae RepID=B7RJK1_9RHOB Length = 716 Score = 76.1 bits (185), Expect = 1e-12, Method: Composition-based stats. Identities = 48/307 (15%), Positives = 91/307 (29%), Gaps = 37/307 (12%) Query: 1 MRVENNNVSG-QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLA-VAKEKWTS 58 M + N + Q D + ID ++ LWRGK I + +A+ LA Y VA + S Sbjct: 7 MNQSSQNFAPTQADDDDSIDFGAMVGTLWRGKWIIALVTAIAVGLAAYYAYKVAIPLYRS 66 Query: 59 TAIITQPDVGQ-IAGYNNAMNVIYGQAAPKVSDLQ----ETLIGRFSSAFSALAETLDNQ 113 TA++ + + G A ++++ L G+ + + + N Sbjct: 67 TAVVILETQQDKVVDLQAVVGGFSGDATAVNTEVEVLRSRGLAGKVVDRLNLIEDPEFNA 126 Query: 114 EEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIAL 173 R+ I + +++ A A + +++ + L + + Sbjct: 127 RLRKPGMIASLKARINGLI-------SSDEAPTDFAPDSVLMQNRIRDNVVASLLGKVGI 179 Query: 174 GRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLL- 232 K I L NQ +V ++ E ++ L Sbjct: 180 RNITRSLVFNVTVESQSPVKSALIADTFVELYILNQIEVKFEATEKATEWLSNRVSELQI 239 Query: 233 ----------------------GSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKV 270 +ALE IK R L + + Sbjct: 240 ELETAEKNVSGFTAQTQLVSVEALQALERQIKDLRDRISSAETANSVIETRLAGLLDAET 299 Query: 271 DDLDIHA 277 D+ + A Sbjct: 300 DEAKLKA 306 Score = 54.2 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 89/291 (30%), Gaps = 41/291 (14%) Query: 62 ITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTI 121 + +G++ N ++++ S ++ LI L + E EK T Sbjct: 169 VVASLLGKVGIRNITRSLVFNVTVESQSPVKSALIADTFVELYILNQIEVKFEATEKAT- 227 Query: 122 EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDS 181 + L VS + E A+ ++ + Q V+ E + L+ I R + + Sbjct: 228 ------EWLSNRVSELQIELETAEKNVSGFTAQT-QLVSVEALQALERQIKDLRDRISSA 280 Query: 182 LRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEAL---- 237 V+ L + EA A + LF AL Sbjct: 281 ETANSVIETRLAGLLDAETDEAKLKAANDAALDRIAAGGLDTEASQNLFGARYAALIERA 340 Query: 238 -------ESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAY------------ 278 + S + Q+L+ ++ L + Sbjct: 341 QADLLRSNQQLNALRVSEADVSNQVSKQGQDLITLQQLTREAEATRLLYEYFLTRLKETS 400 Query: 279 ----------RYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 R + K ++P +P+K + + ++LG +G+ IVL R Sbjct: 401 AQEGIQKADSRLLSKAVVPGAPSAPRKTRIIAIWLILGAFLGSCIVLYREM 451 >UniRef50_D1BLU6 Lipopolysaccharide biosynthesis protein n=3 Tax=Veillonella RepID=D1BLU6_VEIPT Length = 481 Score = 76.1 bits (185), Expect = 1e-12, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 91/270 (33%), Gaps = 22/270 (8%) Query: 18 IDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAM 77 IDL ++ L + + II + + L Y +A + ST+++ ++ + Sbjct: 5 IDLKEVGRVLIKKRRKIINITVACMVLGGAYAFLAPSTYQSTSMLRIKQAQSLSNSVLSS 64 Query: 78 NVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDN---------QEEREKLTIEPSVKNQ 128 Y + + + I + + + +++ E+ K IE + Sbjct: 65 ANAYSDSMSRQLMNTDAEILKSRNVVEPVITAIEDPEGTGNAPTYEDFVKTRIETKPYKE 124 Query: 129 QLPLTVSYVGQTAEGAQM----KLAQYIQQVDDKVNQE---LEKDLKDNIALGRKNLQDS 181 L VS G++ E AQ + +++++ + + E + L+ + + L+ + Sbjct: 125 TELLQVSVTGKSPEQAQEANQLLIDTFLKRLAEISHVEQRTTREFLQKRVVTAKSELEQA 184 Query: 182 LRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMI 241 + + K + L + Q + Q L + + + Sbjct: 185 ENKLQQFQIDNKVYSTADQMKGLTDKITLIDREKAQNQLDLETAQAALGSINEQLGSA-- 242 Query: 242 KHEATRPLVFSPNYYQTRQNLLDIESLKVD 271 + + S + L D+ES K Sbjct: 243 ----GKSIADSATVQAYKGQLADLESRKAS 268 Score = 65.0 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 91/278 (32%), Gaps = 7/278 (2%) Query: 50 AVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAET 109 + K T+ + + Q + ++ + V K + TLI R + ET Sbjct: 169 FLQKRVVTAKSELEQAE-NKLQQFQIDNKVYSTADQMKGLTDKITLIDREKAQNQLDLET 227 Query: 110 LDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKD 169 + + K+ TV + + A YI + D+ K++ Sbjct: 228 AQAALGSINEQLGSAGKSIADSATVQAYKGQLADLESRKASYIGKYTDEHP--AMKEINQ 285 Query: 170 NIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTL 229 I + L + + + + A Q T ++ + Sbjct: 286 QIEEAKSGLNAEINAIASQQAPSSNSAQQGLLADKFKNEAALAVAQGKQSTLVELDKANE 345 Query: 230 FLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHA-YRYVMKPMLPI 288 + + +A R + + + YQ +E KV ++ + + V P LP Sbjct: 346 EAIKGLPEKERGYIQAKRDVDVAQDIYQMLS--TRLEEAKVAEVMVPNEVQIVDPPTLPE 403 Query: 289 RRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNAK 326 + +P+K + ++ + +LG + G LG N + Sbjct: 404 KAIAPRKILIILGSAILGLIFGCLYTLG-QFFGNRKVQ 440 >UniRef50_C5CQW3 Exopolysaccharide transport protein family n=1 Tax=Variovorax paradoxus S110 RepID=C5CQW3_VARPS Length = 764 Score = 76.1 bits (185), Expect = 1e-12, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 74/220 (33%), Gaps = 8/220 (3%) Query: 104 SALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQEL 163 L N+ + + + K Q ++++G +++L Q + + NQ Sbjct: 267 RTQLANLLNEVAQLYVRVNIDQKTAQAQRALNFLGTELPKLKLQLEQSEEIYNQYRNQNG 326 Query: 164 EKDLKDNIALGR-KNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 L D +NL+ + + + + ++ AQ+ + Sbjct: 327 TISLDDEARNALSQNLELQTKLFDATQKRIELSERFTSRDPSVMTVDAQIASLKKAMGTV 386 Query: 223 DITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVM 282 + + +L +L + L S + L + I R + Sbjct: 387 EQRIRRMPMLQQNSLRMQRDIKVNTDLYVSLLNSSLQMRL-------AKEGRIGNVRVLD 439 Query: 283 KPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 + +LP + PK +I + +A++ G GAG R + R Sbjct: 440 QALLPEKPIRPKPSIVMGIALIAGLSFGAGSAFLRRSWRK 479 Score = 49.9 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 31/112 (27%), Gaps = 1/112 (0%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 D L + + L + I VA+ L Y + + +I D + Sbjct: 19 ASDNPPSRLREHVDLLLDNRWRIAGITAVALLLGAAYAMFGPRVYEANVLIQVEDPDRSG 78 Query: 72 GYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEP 123 G + A + + ++ + E E + L + Sbjct: 79 GTLVGDSASNALNAKTPTAGEAEIL-KSRLVLEQAIENTKLYIEAQPLYVPI 129 >UniRef50_A6VA35 Chain length determinant protein n=7 Tax=Pseudomonas aeruginosa RepID=A6VA35_PSEA7 Length = 455 Score = 75.8 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 62/397 (15%), Positives = 119/397 (29%), Gaps = 107/397 (26%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M + + ++DL+ L QLW K + V +A+A+ YL + + + Sbjct: 13 MPSSQYSGPERP----EVDLVQLFRQLWGAKWLVASITGVGLAVAVLYLLLVVPTYEVSV 68 Query: 61 IITQPDVGQIAGYN--NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREK 118 ++ + N + + +A +V+ GRF F A E + Sbjct: 69 LLRPIQTKALEAVNARDIYALTPREALDRVASELSAYSGRFE-YFQAHPERFQQLNKDNG 127 Query: 119 LTIEPSVKNQQLP------------------LTVSYVGQTAEGAQMKLAQYIQQVDDKVN 160 L+ E + L + + L + + D Sbjct: 128 LSAEQAFWKFNLSAFSMKQADLQKDPQATPFVQIFMQYPKGMDGAGILNDMVSRTIDSER 187 Query: 161 QELEKDLKDNIALGRK---------------------------------NLQDSLRTQEV 187 +++ +DL+ + + L+D L+ Sbjct: 188 RQILEDLQARVDSRLQFLAQDIEGKRASYQASKQGRIARLLEADNIRRAGLEDELKALRG 247 Query: 188 VAQEQKDLRIRQIQEALQYANQAQVTKPQIQQ---------------TGEDITQDTLFLL 232 + +D RI+Q+ EA+Q + + + KP T + Q L+ + Sbjct: 248 RLKMVRDSRIQQLNEAIQISTRLGIVKPTTPGALGEVGLDGSRSVFRTEVNNQQIPLYFM 307 Query: 233 GSEALESMIKHEATR--PLVFSPNYYQTRQNLLDIES----------------------- 267 G +AL + R P +Q L +E+ Sbjct: 308 GVDALTAERDTLLKRKGDDFTEPRVAAIQQELKQLENNREVQYLQARQGEERFFDDIEKL 367 Query: 268 ---------LKVDDLDIHAYRYVMKPMLPIRRDSPKK 295 LKV DL I R + +P++ P+K Sbjct: 368 RGEQARLQTLKVGDLKIELVRVDQRAAMPLQPIKPRK 404 >UniRef50_P58764 Tyrosine-protein kinase etk n=184 Tax=Enterobacteriaceae RepID=ETK_ECO27 Length = 726 Score = 75.8 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 35/264 (13%), Positives = 89/264 (33%), Gaps = 11/264 (4%) Query: 60 AIITQPDVGQIAGYNNAMNVIY-GQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREK 118 ++ N + + + L+ T+ G + + ++ N ++ Sbjct: 198 TQFVLSQRTELEAINALQGTFTVSERSKESGMLELTMTGDDPQLITRILNSIANNYLQQN 257 Query: 119 LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNL 178 + + + +Q ++ ++ + + +L Q ++++ Q DL + + Sbjct: 258 IARQAAQDSQ----SLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVDLNLEAKAVLEQI 313 Query: 179 QDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALE 238 + + ++ I Q+ + +A + K Q + + + S + Sbjct: 314 VNVDNQLNEL--TFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRVSAMPST--Q 369 Query: 239 SMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAIT 298 + + Y Q ++ K I R + + + PKKA+ Sbjct: 370 QEVLRLSRDVEAGRAVYLQLLNRQQELSISKSSA--IGNVRIIDPAVTQPQPVKPKKALN 427 Query: 299 LILAVLLGGMVGAGIVLGRNALRN 322 ++L +LG + G VL R LR Sbjct: 428 VVLGFILGLFISVGAVLARAMLRR 451 Score = 75.0 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 38/297 (12%), Positives = 99/297 (33%), Gaps = 21/297 (7%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M +N N + +IDL+ L+ +LW + II + +A+ Y ++ + + Sbjct: 1 MTTKNMNTPPGSTQENEIDLLRLVGELWDHRKFIISVTALFTLIAVAYSLLSTPIYQADT 60 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLT 120 ++ A + ++I + ++Q A D E++ Sbjct: 61 LVQVEQKQGNAILSGLSDMIPNSSPESAPEIQLLQSRMILGKTIAELNLRDIVEQKYFPI 120 Query: 121 IEPSVKN--QQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKD---LKDNIALGR 175 + ++ P ++ + Q V + + LE + + + Sbjct: 121 VGRGWARLTKEKPGELAISWMHIPQLNGQDQQLTLTVGENGHYTLEGEGFTVNGMVGQRL 180 Query: 176 KNLQDSLRTQEVVAQEQKDLRIRQIQEALQY------------ANQAQVTKPQIQQTGED 223 + +L ++ A+ + Q E + ++ + + + Sbjct: 181 EKDGVALTIADIKAKPGTQFVLSQRTELEAINALQGTFTVSERSKESGMLELTMTGDDPQ 240 Query: 224 ITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIES-LKVDDLDIHAYR 279 + L + + L+ I +A + S + ++ L ++ S L + ++ YR Sbjct: 241 LITRILNSIANNYLQQNIARQAAQD---SQSLEFLQRQLPEVRSELDQAEEKLNVYR 294 >UniRef50_B1M5X9 Lipopolysaccharide biosynthesis protein n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1M5X9_METRJ Length = 785 Score = 75.4 bits (183), Expect = 2e-12, Method: Composition-based stats. Identities = 27/272 (9%), Positives = 78/272 (28%), Gaps = 11/272 (4%) Query: 54 EKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQ 113 + W P + ++ + + + + + G + E Sbjct: 228 QVWKVAGEWMLPRLKELQQRASQASREAQTYKAEHTIIDLGKRGLVGEQ--QVEELNTAV 285 Query: 114 EEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ--ELEKDLKDNI 171 T++ Q+ + + I Q+ + + DLK + Sbjct: 286 AAARSKTVDARAVRDQIRGLLDSDIADPGITEAFKDSVIIQLRRQYVDLVQRADDLKRRL 345 Query: 172 ALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQ-YANQAQVTKPQIQQTGEDITQDTLF 230 +++ A++ + ++ +L A+ + + + + TL Sbjct: 346 -GPDHEAVQAIQRDIQAAKQSLRTELERLAVSLDHDYEVAKAREDSMTAAFDALISKTLI 404 Query: 231 LLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRR 290 + + + A N Q I+++ + + +P Sbjct: 405 MSNARVKAKELDRTAETYDQIYTNLLQ-----RYIDAVNQQSYPQPSAHVITPATVPESP 459 Query: 291 DSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 +P+ ++ ++L +L+G G R+ Sbjct: 460 SAPRGSLIMLLGLLVGTGFGVSGAFARHWFDR 491 >UniRef50_D0MGZ9 Lipopolysaccharide biosynthesis protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGZ9_RHOM4 Length = 415 Score = 75.4 bits (183), Expect = 2e-12, Method: Composition-based stats. Identities = 47/342 (13%), Positives = 105/342 (30%), Gaps = 35/342 (10%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGY 73 + ++I L+DL V + R + I++SV+VA+ + + ++ + + + A + G G Sbjct: 29 EDDEISLLDLGVVIARQRRVIVVSVLVALVVGVVVALLSPKSYVAEAKLAPSSTGSTGGA 88 Query: 74 NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLT 133 +A+ S LA D E+ V+ Sbjct: 89 LSALRSFGLSLGEDEIVSPSVYPDIVGSPDFLLALARDTFYIAEEGRPMTLVEYYGRRSW 148 Query: 134 VSY----VGQTAEGAQMKLAQY--IQQVDDKVNQELEKDLKDNIALGRKNLQDSLR---- 183 +SY + + Y + + E ++L++ ++ K L+ Sbjct: 149 LSYLNPLNWLSGDEGAPVRDLYSGALILPTEEEYEAIRELREVLSASEKAGGGLLKEGPG 208 Query: 184 ---------------TQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDT 228 A I +I+ + + + Q E + Sbjct: 209 VITVRAETDDPYLSAAIVERAIRHLQAAINRIKTEKARQDLEFLERKFAQVEAELRQAEN 268 Query: 229 LFLLGSEA--------LESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRY 280 +A L + ++ + Y + + ++V + Sbjct: 269 ELARFLDANRNPQTAQLRAEMERLQRQVSFKEQLYRELQLQKTQ-AEIQVQK-EAPVLSI 326 Query: 281 VMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 V P+ P + + ++L + LG VG G+ + L Sbjct: 327 VQPPVPPDEPSGTSRKLIVLLFLFLGVFVGLGLAFVNHWLSR 368 >UniRef50_Q65SG7 GumC protein n=2 Tax=Pasteurellaceae RepID=Q65SG7_MANSM Length = 703 Score = 75.0 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 47/277 (16%), Positives = 96/277 (34%), Gaps = 37/277 (13%) Query: 80 IYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQ 139 VS L+ + RFS ++ L+ E +K Q + +++ G+ Sbjct: 172 DNQDIEILVSQLKGSSGKRFSLKKMEKSDVLELVEALQKAVTADEKGKQTGVIELTFKGE 231 Query: 140 TAEGAQMKL----AQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQE--QK 193 E Q L Y++ + + E L + ++D L E E QK Sbjct: 232 DPEYIQKVLHSITQSYLEHSTARNSAEASNSL-SFLQKRLPEVRDRLTKSENELNEYRQK 290 Query: 194 DLRIRQIQEALQYAN----------QAQVTKPQIQQ-------TGEDITQDTLFLLGSEA 236 + EA + + + +I Q + + LL +A Sbjct: 291 KASVDLELEAKSVLDTLVQLDSNLNALTIRESEISQRFTKRHPNYVALLEQRQVLLDEKA 350 Query: 237 -LESMIK----------HEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPM 285 L ++ V Y Q + +++ +K + R + + Sbjct: 351 RLTKQLESLPETQKDTVRLTRNFEVDQQIYTQLSNKIQELDVVKAGA--VGNVRILDEAQ 408 Query: 286 LPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 + +P+K I L+L ++G ++G+G V+ ++ L+N Sbjct: 409 TLPKPVAPRKLIILVLTAIVGFLLGSGGVILKSILQN 445 Score = 62.3 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 43/305 (14%), Positives = 92/305 (30%), Gaps = 34/305 (11%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV---G 68 + IDL LL W K I++S ++ L + Y +A + +T+ + + G Sbjct: 3 KKQNDVIDLTKLLGLFWDQKRIILLSTLLCAGLGLVYSLLAPSIYMATSSVQVEEKYTGG 62 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQ 128 + G ++ ++ + + E + Sbjct: 63 ALQGLSSIFEQESTAGTEIAVIKSRAIVSKAVEDLNLTTEVSPVYPIPFFSKAVEKLMGD 122 Query: 129 QLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDL-----------KDNIALGRKN 177 + +TV+ E AQ ++ + +K L +I + Sbjct: 123 KPEITVARFVPKREDAQEYTLVIGSNENEYSVLDEQKQLVLNGVVGEKYDNQDIEILVSQ 182 Query: 178 LQDSLRTQEVVAQEQKDLRIRQIQEALQYA-------NQAQVTKPQIQQTGEDITQDTLF 230 L+ S + ++ + + ++ EALQ A Q V + + + Q L Sbjct: 183 LKGS-SGKRFSLKKMEKSDVLELVEALQKAVTADEKGKQTGVIELTFKGEDPEYIQKVLH 241 Query: 231 LLGSEALE-----------SMIKHEATRPLVFSPNYYQTRQNLLDIESLKVD-DLDIHAY 278 + LE + + R ++ L + K DL++ A Sbjct: 242 SITQSYLEHSTARNSAEASNSLSFLQKRLPEVRDRLTKSENELNEYRQKKASVDLELEAK 301 Query: 279 RYVMK 283 + Sbjct: 302 SVLDT 306 >UniRef50_Q2CAF1 Putative uncharacterized protein n=2 Tax=Rhodobacteraceae RepID=Q2CAF1_9RHOB Length = 719 Score = 74.6 bits (181), Expect = 4e-12, Method: Composition-based stats. Identities = 68/444 (15%), Positives = 135/444 (30%), Gaps = 122/444 (27%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYL-AVAKEKWTST 59 + V + ++IDL+ LL LWRGK I+++ ++A+A + Y VA+ K+ +T Sbjct: 14 VTPAPAPVPANSVADDEIDLLALLRTLWRGKWLILLAALLALAAGVYYATQVAEPKYAAT 73 Query: 60 AIITQPDVG-QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREK 118 I Q+ + + M+ + ++++ + L++ Sbjct: 74 TAIALQVNNPQVVDFESVMSGVSTDDTSMNTEVEVIRSRGLLEQLVDRLDLLEDPAFNTS 133 Query: 119 LTIE-----------------------------------------PSVKNQQLPLTVSYV 137 L E SV+ L + Sbjct: 134 LRPEEGLSLTALLAPLTGEAPDAAAASGEAAALNATVDQVRDALGASVQRDTFILNIRAT 193 Query: 138 GQTAEGAQMKLAQYIQQVDD-------KVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQ 190 + + + + + + +E L D + L+ + Sbjct: 194 TGDPQKSALIANTLAELYIEDQIAVKFQGTEEAVAWLSDRVTALEDELRQKEDQIAALRA 253 Query: 191 EQKDLRIRQIQ----------------------------------------EALQYANQA 210 E + + ++ EAL AN A Sbjct: 254 ESELVSAEALEGLNRQAKDVRDRLTELEQQAAREAARLAELEAAIERGDTAEALALANDA 313 Query: 211 QVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNY--------YQTRQNL 262 + + + D LF +E + + +++ R + + QT Sbjct: 314 TLRQLAQRVEAGDEAAGELFERRAETVLARARNDLARTEAQAASLETSLARLQTQTEAQS 373 Query: 263 LDIESLKVDDLDIHAYRYVMKPML------------------------PIRRDSPKKAIT 298 ++ L+ + + A R + + L P +P+KA Sbjct: 374 AELAQLQQLEREAQATRTLYETFLARLKETTVQRGLQQADARILSYATPGEMVAPRKARI 433 Query: 299 LILAVLLGGMVGAGIVLGRNALRN 322 LA++LG MVG GIVL R A+R+ Sbjct: 434 AALALILGLMVGTGIVLLREAMRS 457 >UniRef50_D1QTS5 Chain length determinant protein n=1 Tax=Prevotella oris F0302 RepID=D1QTS5_9BACT Length = 356 Score = 74.6 bits (181), Expect = 4e-12, Method: Composition-based stats. Identities = 30/347 (8%), Positives = 93/347 (26%), Gaps = 29/347 (8%) Query: 1 MRVENNNVSGQNHDPEQ--IDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTS 58 M EN + + E+ ID L L + +I + ++ L Y + Sbjct: 1 MNEENRLQNNPQWEEEETSIDFKALFDALKKHWKNYVIFISASVILGAVYALSLPAYYEC 60 Query: 59 TAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREK 118 + ++ +V S + + + + L ++D + Sbjct: 61 QVTLVPELSLNGGATSSFSSVASSFGVKLGSSGSKDVDAITPNLYPDLMNSVDFKGSLFD 120 Query: 119 LTIEPSVKNQQLP-------------LTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEK 165 + + ++ + + G+ + + + + + ++K Sbjct: 121 IKVHRKDSHKMMNYYDYLLYYQQKPWWIKLFSGKDTIKNEKLNTFMLTKQQTAIMKAIQK 180 Query: 166 DLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQ------IQEALQYANQAQVTKPQIQQ 219 ++ ++ + + Q+ + ++ + A ++ Sbjct: 181 NVLCDVDEKTGVITIHVTDQDPLIAATMADSVQSRLQEFITEYRTNKARNDLENIKKLCS 240 Query: 220 TGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLD----- 274 + + L GS + + + + SL + Sbjct: 241 EAKHRYEKARQLYGSFSDSNQDLILESVRSKQEDLENDMQLQFNTYNSLAANLQASYARV 300 Query: 275 ---IHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 A+ + +PI + P+ ++L + L + Sbjct: 301 QEVTPAFTTLQSATMPIEKAGPQGKKIVLLFAFIAFFGVTMYALWKE 347 >UniRef50_Q13QA8 Protein-tyrosine kinase n=3 Tax=Burkholderia RepID=Q13QA8_BURXL Length = 736 Score = 74.2 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 77/205 (37%), Gaps = 8/205 (3%) Query: 119 LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNL 178 + K+ Q + ++G+ + L + + + + DL+ L +++ Sbjct: 277 VQRNVDRKSAQAQQMLQFLGEQLPQLRGDLDEAEAKYNAFRTENGTVDLEAEGRLLLQSI 336 Query: 179 QDSLRTQEVVAQEQKDLRIRQIQEALQY-ANQAQVTKPQIQQTGEDITQDTLFLLGSEAL 237 DS + Q++ L R + A AQ+ + +Q + L + +AL Sbjct: 337 VDSQTRLVELQQQRSALAQRYTTQHPSVQAIDAQIADLKKRQGAFNEKVAALPNVQQQAL 396 Query: 238 ESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAI 297 M L + Q L +++ ++ + R V + R PKK + Sbjct: 397 RLMRDVRVNTDL--YTKLLDSTQQLHVLKAGQLGN-----VRTVDYAEVAERSVKPKKTL 449 Query: 298 TLILAVLLGGMVGAGIVLGRNALRN 322 ++L+ ++G ++G I R+ L Sbjct: 450 VIVLSGVIGLLLGCSIAFVRSTLNR 474 Score = 55.7 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 42/110 (38%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M++ + SG+ ++I L D++ L ++ I+++ + L + Y VA + + Sbjct: 1 MKLLDQERSGEAPGEKEITLSDVIALLGENRLLIVLTTAAMLFLGVAYAFVATPLYKADV 60 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETL 110 +I N+ + + K S E + R +L Sbjct: 61 MIQVDSDPGNQTLNDKLGDLASLFQSKASTDAEIELIRSRMVVEETVRSL 110 >UniRef50_A4JQJ9 Lipopolysaccharide biosynthesis n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JQJ9_BURVG Length = 743 Score = 74.2 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 31/242 (12%), Positives = 78/242 (32%), Gaps = 31/242 (12%) Query: 110 LDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKD 169 ++ + + Q L+V+ G + L + + K+ Sbjct: 237 IEAVAQLQDDLSVEEKAKQSGILSVTLEGDDKVRIREILKAVVDGYVAQNRDYRSKEAAA 296 Query: 170 NIALGRKNL----QDSLRTQEVVAQEQKDLRIRQIQE--ALQYANQAQVTKPQIQQTGED 223 + + ++ Q +E A+ + R + E L + + ++ Sbjct: 297 TLESLKISMPAVEQTLKDAEERYAKFRARTRTVDLDEQGKLLLGQEVDIDTRMLELKQRR 356 Query: 224 ITQDTLFLLGSEALES------MIKHEATRPLVFSPNYYQTRQN-LLDIESLKVD----- 271 + F G A+++ + +A T + L + ++V+ Sbjct: 357 VDLIARFADGHPAVQALDANLAELAGKAAELRTREARLPDTEREGLAVLRDVRVNTELYT 416 Query: 272 -------------DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 +I R V +P+LP++ PK+ + + L++ +G +G + Sbjct: 417 NLLNTAQQLNIAKQSEIGNVRAVDQPVLPVKPVKPKRLLVIALSLCVGIALGVAAPFAQR 476 Query: 319 AL 320 A+ Sbjct: 477 AV 478 >UniRef50_Q1Q1R5 Similar to Succinoglycan biosynthesis transport protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1R5_9BACT Length = 850 Score = 73.8 bits (179), Expect = 7e-12, Method: Composition-based stats. Identities = 45/427 (10%), Positives = 114/427 (26%), Gaps = 105/427 (24%) Query: 1 MRVEN--NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTS 58 M N NN G+ ++ L D L + + ++I V +++ + + Sbjct: 1 MNQNNEFNNTFGRKPLNREVHLTDYLKIIRKHIWILVIFFTVVVSVVTYLSFTVTPVYKA 60 Query: 59 TAIITQPDVGQIAG---------------YNNAMNVIYGQAAPKVSDLQETLIG-RFSSA 102 T I + Y ++ ++ K + L + A Sbjct: 61 TTQIIIDNKKSFMEEMADVMRIDATDKEYYQTQYKLLASRSLAKQVIQENELREVFYRDA 120 Query: 103 FSALAETLDNQEEREKLTIEP--------------------SVKNQQLPLTVSYVGQTAE 142 + + +E + + P + + +S+ ++ E Sbjct: 121 LEKIGSSETAPDENDMESYLPLSDAEVTSEMIDWYLRNLMIEPIRETHLVNISFSNKSPE 180 Query: 143 GAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQI-- 200 + + ++ +Q + + + +Q + + ++ Sbjct: 181 TSARVANAHAHAFIERSSQIQRMSSQQALDWLKSQIQGQKFKVGDSQKAAFQYKYEKLRS 240 Query: 201 -------------------------------QEALQYANQAQVTKPQIQQTGEDITQDTL 229 + L + P++ + I Sbjct: 241 FSFDDESIFLFPEIKENKVIDELYKQLCSLKESVLANTKKYGPNHPRMIEANASIKGLEQ 300 Query: 230 FLLGS-EALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVD----------------- 271 ++ + + S IK E + F + + + +K Sbjct: 301 EIIEEVKKVCSSIKRELDSIIAFESTNPKMQDIQEQMSLVKAGGAINYDILHLEAMSDQA 360 Query: 272 ----------------DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVL 315 ++ R V K P+ P+K + ++L+V++G G G+V Sbjct: 361 IYDILINQAKEINLTGNMKKDTIRVVDKAEAPLFPSKPRKKLNVLLSVVVGLTFGTGLVF 420 Query: 316 GRNALRN 322 R + N Sbjct: 421 FREYMDN 427 >UniRef50_A9ANS7 Capsular exopolysaccharide family n=45 Tax=Burkholderia RepID=A9ANS7_BURM1 Length = 741 Score = 73.8 bits (179), Expect = 7e-12, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 73/245 (29%), Gaps = 31/245 (12%) Query: 105 ALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEG----AQMKLAQYIQQ---VDD 157 LD + Q + +S G+ E A Y+ Q Sbjct: 228 TRYNDLDAITGFQSGIQVSEQGKQTGVVQISLEGKDPEQTAAIANALAQSYLHQHVIAKQ 287 Query: 158 KVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQ-----IQEALQYANQAQV 212 ++ LK + +L+ + + + ++ ++QY Q Sbjct: 288 AEATKMLDFLKGEEPRLKADLERAEAALTQYQRTSGSINASDEAKVYLEGSVQYEQQIAA 347 Query: 213 TKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDD 272 + Q+ + T ++ ++ + ++ E + + T + ++ Sbjct: 348 QRLQLASLAQRFTDSHPLVIAAKQQLAELQGEKEKFSNRFRSLPATEVKAVQLQRDAKVA 407 Query: 273 LDIHA-------------------YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGI 313 DI+ + + P PKK + L AV LG ++G G+ Sbjct: 408 EDIYVLLLNRVQELSVQKAGTGGNIHLIDSALRPGAPVKPKKVLILSAAVFLGLILGTGV 467 Query: 314 VLGRN 318 V R Sbjct: 468 VFLRR 472 Score = 42.2 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 41/146 (28%), Gaps = 9/146 (6%) Query: 2 RVENNNVSGQNHDPEQID--LIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTST 59 ++ + ++ D L LL + ++ + +ALA Y VAK + + Sbjct: 4 TQAKHSYADPTAKTDEEDVVLGQLLQVILDDIWLLLGIAVAVVALAGLYCYVAKPVYQAD 63 Query: 60 AIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKL 119 + + + I S E+ Sbjct: 64 VHVRVEGNDNTTQALTQTQTGAMINSGPQQAPTDAEIEIIKSR-------GVVAPVVEQF 116 Query: 120 TIEPSVKNQQLPLTVSYVGQTAEGAQ 145 + SV + +PL S + A + Sbjct: 117 KLNFSVVPKTIPLLGSLTARLATPGE 142 >UniRef50_D2RIR1 Lipopolysaccharide biosynthesis protein n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RIR1_ACIFE Length = 482 Score = 73.1 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 41/272 (15%), Positives = 93/272 (34%), Gaps = 21/272 (7%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI-AG 72 + ++IDL +L + + TI + LA+ YL + + STA++ + + Sbjct: 2 NEQEIDLRELWQIVRTNQKTIAKITGGFLGLAVAYLLIVPNTYQSTALLRIKQERGLSSS 61 Query: 73 YNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEERE-------KLTIEPSV 125 + + Q + + ++ + +T + ++ + K I Sbjct: 62 IMEQLPIGNAQLTKQQMNTNAEILKSRHVVIPVIEQTEEEKDGKYPRYEDYVKSHIVTKP 121 Query: 126 KNQQLPLTVSYVGQTAEGAQM----KLAQYIQQVDDKVNQEL---EKDLKDNIALGRKNL 178 L V G++ E AQ + ++ ++ + E + L+ + +K L Sbjct: 122 YKDTEILEVDVTGKSPEQAQEANQLLVQGFLDRLAQLSHAESSATREFLEQRVKSSKKEL 181 Query: 179 QDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALE 238 D+ + + K ++L + + Q L + + Sbjct: 182 DDAETKLKNYQVKHKIFSTDNQMKSLAERITDLDKAKAQNKLDMETAQAALGSINDQ--- 238 Query: 239 SMIKHEATRPLVFSPNYYQTRQNLLDIESLKV 270 A L SP+ Q + L+D+E+ K Sbjct: 239 ---LAGAGAALADSPSIQQAKNKLVDLETQKA 267 Score = 42.2 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 46/259 (17%), Positives = 85/259 (32%), Gaps = 24/259 (9%) Query: 66 DVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSV 125 + +A ++ Q + Q L A A D+ ++ + Sbjct: 203 QMKSLAERITDLDKAKAQNKLDMETAQAALGSINDQLAGAGAALADSPSIQQAKNKLVDL 262 Query: 126 KNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQ 185 + Q+ T Y + + + I + L K+++ IA Sbjct: 263 ETQKAGYTGKYTSENPKMKE------INRQIGAARYSLRKEIQAIIAQK---------AP 307 Query: 186 EVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEA 245 + +QK L + EAL AQ I Q + + L ++ +K +A Sbjct: 308 SSSSVQQKLLSDKFTNEALIAV--AQGKNNAIDQLEKKNADEIARLPQTQQGYLQVKRDA 365 Query: 246 TRPLVFSPNYYQTRQNLLDIESLKVDDLDIHA-YRYVMKPMLPIRRDSPKKAITLILAVL 304 +E KV ++ + + V + LP + P+K +TL+LA+ Sbjct: 366 DVAQEIYVMLA------KRLEEAKVAEVMVPTEVQVVDEATLPDKPIKPRKLLTLVLALF 419 Query: 305 LGGMVGAGIVLGRNALRNY 323 LG G G + R L Sbjct: 420 LGLFGGTGYTIARTLLNRK 438 >UniRef50_C3K6I8 Conserved hypothetical chain length determinant protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K6I8_PSEFS Length = 218 Score = 73.1 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 38/191 (19%), Positives = 72/191 (37%), Gaps = 4/191 (2%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + + S ++IDLI L+ LW K+TII + +V A+ A + E+WT++ I Sbjct: 1 MSSPTNSNARPHDDEIDLIPLIQTLWNSKITIIATTVVGAVAALTLSATSPEQWTASTYI 60 Query: 63 TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRF-SSAFSALAETLDNQEEREKLTI 121 T+P + +N A L+ L + F + + + K Sbjct: 61 TKP---SLYSLYKEINEKDAPAKASPLSLETKLYSTIQNDIFYSAMGIMAAKSVALKDAP 117 Query: 122 EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDS 181 S ++ + S +TA A +L ++ + + L L N D Sbjct: 118 PKSGGSEPVLYIASTTAKTAALASAQLKSAMETANTEAIALNLPALAAGNTLKAFNTLDE 177 Query: 182 LRTQEVVAQEQ 192 ++T ++ Sbjct: 178 IQTSTQKTTKK 188 >UniRef50_B1FTG2 Exopolysaccharide transport protein family n=4 Tax=Burkholderia RepID=B1FTG2_9BURK Length = 750 Score = 72.7 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 36/278 (12%), Positives = 86/278 (30%), Gaps = 34/278 (12%) Query: 76 AMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVS 135 N G+ +V L F +A +TL+N +++ + Q + S Sbjct: 198 VSNESTGKITLRVQALNANPGTEFVLVRNARLKTLENLQDKLFI---VEKGKQSGIIGAS 254 Query: 136 YVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDL 195 G + L + + + ++A L E + L Sbjct: 255 LTGTDRQLTAKILNNIGDEYVAANIARKAAEAEKSLAFLSDLLPQLKSELEESERNYNAL 314 Query: 196 RIRQ------------IQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKH 243 RI++ ++E+++ A K + + T + + + + + Sbjct: 315 RIKRGTFDISEEGKTYLRESVELQASALALKQKRSELTALFTSEHPSVRAVDQQLASLSA 374 Query: 244 EATRPLVFSPNYYQTRQN-LLDIESLKVDDL------------------DIHAYRYVMKP 284 + + + Q L + ++V++ + R + + Sbjct: 375 KEAAVSQRMTSLPELEQESLRLMRDVRVNNDLYVGMLNNMQQLKLVRAGKVGTVRLLDRS 434 Query: 285 MLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 ++P P K + + + +LG +G R+ LR Sbjct: 435 LVPKEPIKPNKPLLIAASAVLGLFLGIAATFMRHILRG 472 Score = 58.4 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 35/319 (10%), Positives = 88/319 (27%), Gaps = 42/319 (13%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M + ++L+ + + + ++ + +A+ + Y +A + S Sbjct: 1 MNEFSPKSQAAGSGQNDVNLVRYVDVVLANRWLVLAITSMVLAIGVAYSFLAPPVYQSDI 60 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLT 120 ++ + + + K + + R + L E Sbjct: 61 LLQVEQES-PTNTKSLLGDVSSLFDVKTETTAQIEVLRSRMVVGNAVDNLRLYISAEPKR 119 Query: 121 IE-----------------------PSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDD 157 + N+ + + V + EG KL Sbjct: 120 FPLIGNWIARWNKSLSQPGLLGVGGFAWGNESIDVGTFDVPEDLEGDDFKLTSLGGDRYV 179 Query: 158 KVNQE-------------LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEAL 204 ++ + + I L + L + T+ V+ + + + +Q+ L Sbjct: 180 VDQKQLDAPIYGRVGETIVSNESTGKITLRVQALNANPGTEFVLVRNARLKTLENLQDKL 239 Query: 205 QYA---NQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQN 261 Q+ + + T +T L +G E + + I +A Sbjct: 240 FIVEKGKQSGIIGASLTGTDRQLTAKILNNIGDEYVAANIARKAAEAEKSLAFLSDLLPQ 299 Query: 262 LLDIESLKVDDLDIHAYRY 280 L L+ + + +A R Sbjct: 300 LK--SELEESERNYNALRI 316 >UniRef50_B6C223 Chain length determinant protein n=1 Tax=Nitrosococcus oceani AFC27 RepID=B6C223_9GAMM Length = 285 Score = 72.7 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 63/231 (27%), Gaps = 39/231 (16%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M + +HD ++I+L+DL L R K T+I+ ++ I + + + Sbjct: 28 MAFPQSGEYRGHHDEDEINLLDLWQILVRRKWTVIVFFLIVTTAGITASFLMTPIYRAGV 87 Query: 61 IIT----QPDVGQIAG-------------YNNAMNVIYGQAAPKV--------------- 88 + P V Y ++ ++ K Sbjct: 88 TLLIDREPPKVVDYQEIAPVESPASREDFYQTQYGLLKSRSLAKQVFEELDLAHHPVFAV 147 Query: 89 SDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKL 148 S + + ER + I + + Y E + + Sbjct: 148 EQKPSFWSRLMSKEEETGGQEKEKLIERFQEEITVEPVRNSRLVKIYYDSPDPELSAQVV 207 Query: 149 ----AQYIQQVDDK---VNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQ 192 +I ++ LKD + + L+++ + A Sbjct: 208 ETLGQAFITANLERRYDATAYARDFLKDRLLQVKARLEETEQKLVEYANNH 258 >UniRef50_C3KRX1 CPSC/CAPB subfamily ATPase n=5 Tax=Rhizobiales RepID=C3KRX1_RHISN Length = 633 Score = 72.7 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 38/375 (10%), Positives = 101/375 (26%), Gaps = 60/375 (16%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII-T 63 +N + D + I D+ + + I+ + + A+ Y+A +T+ I Sbjct: 17 QSNPYRPDSDSDFIRFADITSFIRQRIFLIMSCPFIGLLGAVFYVATTDSIFTARTQILI 76 Query: 64 QPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREK----- 118 +P + ++ ++ + + + L + +S +D+ + Sbjct: 77 EPKIPELLQKQSSDINLSLDTSQVETQLAVLRSEKIASMVIDELGLVDDPSFKPLHSPSL 136 Query: 119 ------------LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKD 166 T + Q A A+ ++ + + + + Sbjct: 137 TVRLERIAGMAVETFAFNEVTQPPTAPPPSTAPDAAETSELTAELLEF---QRRRRVVET 193 Query: 167 LKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQ 226 + + R + ++ + ++ Q + ++ E + + Sbjct: 194 FSQGLGVQRVGVSYAIDITFNSLDPELAAKVANATAGAFVREQLETRAAAAREGVEWLEK 253 Query: 227 DTLFLLGSEALESMIKHEATRPLVFS---------------------------PNYYQTR 259 + L + I E + P + Sbjct: 254 RIEEVRVQMNLATQITQEFRAKHDYRVGRQPGAPIVDGQVAPSGEGESTTPSGPTLEELE 313 Query: 260 QNLLDIESLK-------VDDLDIHAY-----RYVMKPMLPIRRDSPKKAITLILAVLLGG 307 + + ++ + R + P+ P+ + L L VL G Sbjct: 314 VTAETYRKMYESLLAGFTNSVNQQPFLIADARVITPATRPLAPSYPRTKLVLALGVLAGL 373 Query: 308 MVGAGIVLGRNALRN 322 M G G+ R+ L Sbjct: 374 MAGVGLAFARHTLDR 388 >UniRef50_B0UKX0 Lipopolysaccharide biosynthesis protein n=1 Tax=Methylobacterium sp. 4-46 RepID=B0UKX0_METS4 Length = 576 Score = 72.3 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 49/321 (15%), Positives = 110/321 (34%), Gaps = 19/321 (5%) Query: 18 IDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA-----G 72 ++L ++L L R + ++ + + I YL +A+ +T+TA I +IA Sbjct: 20 VNLREILSVLKRRRAIFLVVTSIVLFSVIAYLFIARPTFTATAQILLDQQQRIADDVPRE 79 Query: 73 YNNAMNVIYGQAAPKVSDLQETLIGRF--------SSAFSALAETLDNQEEREKLTIEPS 124 + V + + ++ R F++ L + + Sbjct: 80 QLPSETVSAIVESQVQTVASHEIVRRLIASEHLTSDPEFASRGLVLQILHSALGMIGTAA 139 Query: 125 VKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVD--DKVNQELEKDLKDNIALGRKNLQDSL 182 + V + A A+ ++ ++ Q+ + + ++ Sbjct: 140 YEEGDPEARVHQNVRNAISARRLDKTFVLEISFESHDRQKSARLANATARAFIADQVEAK 199 Query: 183 RTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIK 242 + R+ +++ LQ A QA + + Q + + L G+EAL + + Sbjct: 200 VAANRRLAASYEARLPELRGELQRAEQA-IETYKFQHSTVVPSGGPATLGGNEALVGLRE 258 Query: 243 HEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILA 302 E + Q ++ + + + R++ + P RR P + L+ Sbjct: 259 LEREAETSRALYVSQLA---RSRKAFEQANFYVADARFISPAIPPARRSWPPTGVLLVAG 315 Query: 303 VLLGGMVGAGIVLGRNALRNY 323 + G V AG+ L R+ L Sbjct: 316 LFGGMSVAAGVALLRDHLDTR 336 >UniRef50_Q0AE90 Lipopolysaccharide biosynthesis n=2 Tax=Nitrosomonas RepID=Q0AE90_NITEC Length = 747 Score = 71.9 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 58/230 (25%), Gaps = 31/230 (13%) Query: 124 SVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLR 183 + L ++ A + + + ++ + + + K L Sbjct: 248 EIGKGTGILQLTIESDNRAKAVQIVNEIANTYLQQNVEQKSAESQKTLEFLEKQLPALKE 307 Query: 184 TQEVVAQEQKDLRIR--------------------QIQEALQYANQAQVTKPQIQQTGED 223 E D RIR Q L + ++ + + Sbjct: 308 QLETTTNALNDYRIREGSINLDLETQNILTGTVELNTQITLLQQKRDELRQRFTESHPNV 367 Query: 224 ITQDTLFLLGSE---ALESMIKHEATRPLVFSPNYYQTRQNLLDIESLK--------VDD 272 + D AL+ I + N +L Sbjct: 368 VAIDKQISRLQTQIHALDKKIGKLPETQQIILRLSRDVEVNAELYTTLLNHAQTIRVAKA 427 Query: 273 LDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 + R V + P PKK + + +A++ G M+G R +L Sbjct: 428 GTVGNVRIVDYAIPPDLPIKPKKTLIMGIALMAGLMLGVIFAFIRRSLSR 477 Score = 52.3 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 15/103 (14%), Positives = 35/103 (33%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 + + ++IDL +LL L K I I + + ++ + + +++ + Sbjct: 8 MPSDQNSDEIDLGELLDILADNKQLIFIITFITCMIGAAISLLSLPIYKADSLLQVRENT 67 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLD 111 Q + + V E + R + +LD Sbjct: 68 QSMVEQLDSLSTFFETKTPVQAEIELIKSRMILGKTIRNLSLD 110 >UniRef50_B1I5B3 Lipopolysaccharide biosynthesis n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I5B3_DESAP Length = 445 Score = 71.9 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 46/410 (11%), Positives = 98/410 (23%), Gaps = 94/410 (22%) Query: 1 MRVENNNVSGQNH-DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVA-KEKWTS 58 M + N + + IDL L + + I + +A+ + + + + Sbjct: 1 MNEQQKNGPQRPAFTEDVIDLRAYFKVLHKWRKVIALGTFLAVLTSGILSFFILQPVYEA 60 Query: 59 TAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDL-----------QETLIGRFSSAFSALA 107 ++ + + E L+ R + Sbjct: 61 KTLLMVTQAADRQRVVEQDGLEGVVGTLSRIPVMTMNTYLGQIKSEALMDRVIAKLGLDR 120 Query: 108 ETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLA----QYIQQVDDKVNQEL 163 + + E ++ SV + V A+ +Y+ + DK +++ Sbjct: 121 ALYEPRHLLE--MVDASVIKDANLIEVRVRHTDPVLARDIANAINTEYLLMLSDKNEEQM 178 Query: 164 ------EKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQ------AQ 211 + +D Q L+ E + L Q++ A A Sbjct: 179 ARSVDFLERQRDEALARLDEAQGKLKEFEAQPRSVAVLEAEFTQKSEDLARYKSRLNTAV 238 Query: 212 VTKPQIQQTGEDITQDTLF----------------------------------------- 230 + QI + ++ Sbjct: 239 IELQQISAGVARMQEELNATPQTISVERSTDEGVVTAREPNPVYATLSERLSERKAAQAE 298 Query: 231 -LLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIE----------SLKVDDLDIH--- 276 +AL +I V R L + +L + Sbjct: 299 KEAEVQALTQLIAGLEGETSVLLAELTTKRAGLDRLRDEVNRLDATANLLAQKVTETQIA 358 Query: 277 --------AYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 + V P P K + + +A++LG MV G+ Sbjct: 359 RSIDLGQTSVVVVSPANTPTTPVKPNKKLNMAVALVLGLMVFVGLAFVLE 408 >UniRef50_C4Z673 Non-specific protein-tyrosine kinase n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z673_EUBE2 Length = 283 Score = 71.1 bits (172), Expect = 4e-11, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 54/168 (32%), Gaps = 3/168 (1%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAV-AKEKWTSTAIITQPDV 67 + + +IDL ++ L I+++ +V ++A Y ++ ST + + Sbjct: 4 KSKETENIEIDLREIFGVLIHRLWIIVVAALVCGSVAFMYSFFVITPQYESTTKVYILNK 63 Query: 68 GQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKN 127 +G +V K D ++ + R+ LD E + S Sbjct: 64 QNASGSVTYSDVQLSSTLSK--DYEQLVTSRYVIEGVINDLKLDETYESLVKRVSASNAT 121 Query: 128 QQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGR 175 + ++ E AQ + + ++ + + + Sbjct: 122 DTRIIAITVTDPEPEQAQKIANSVRDLAAKHITEVMDIEAVNVVDQAN 169 >UniRef50_B2TDM9 Exopolysaccharide transport protein family n=1 Tax=Burkholderia phytofirmans PsJN RepID=B2TDM9_BURPP Length = 747 Score = 71.1 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 33/239 (13%), Positives = 80/239 (33%), Gaps = 23/239 (9%) Query: 96 IGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQV 155 + + + L L+ ++ I + + V+ G AE + L Q + Sbjct: 244 VDEQGNKSNVLGVMLEGRDPVLVTNILNDIGAVYVRQNVNEKGANAEKSLNYLEQQLPGA 303 Query: 156 DDKV--NQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEAL--------- 204 ++ +E +++ L + + L ++ + + +++ ++ L Sbjct: 304 KRQMEQAEEAYNTYRNSHGLLDADEESRLILRQATEADSRLYDLKRQRQDLMAHLTAEHP 363 Query: 205 ---QYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQN 261 Q T ++ + G+ L + S Y R N Sbjct: 364 SVVAIDQQIASTNKYVESLAARVKSMPTAEQGAIRLMR-------DMRMSSDMYSALRSN 416 Query: 262 LLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 + + +K + + + +P R P K + L+++ +LG V G+ R+ L Sbjct: 417 IDTLRLVKAGQS--ASVQLLDTADVPERPVKPAKTLVLLISAVLGLFVAIGLAFLRDYL 473 Score = 52.6 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 14/124 (11%), Positives = 36/124 (29%), Gaps = 3/124 (2%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M+++ G + ++ D ++ L + I + I + Y A + ++ Sbjct: 1 MKLKYQASEGLSERNDEFDPGSIIDTLINHRKMIAAITMAFILVGALYAFCATPIYRASI 60 Query: 61 IITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLT 120 I V + + + A + + + S + + Sbjct: 61 SI---RVEDNSPTALPDSKDLVRNASSLFQEKSSAESEMQILRSKAIAMQTVDYLKLYIE 117 Query: 121 IEPS 124 EP Sbjct: 118 AEPK 121 >UniRef50_A6BAV1 OtnB protein (Fragment) n=1 Tax=Vibrio parahaemolyticus AQ3810 RepID=A6BAV1_VIBPA Length = 175 Score = 71.1 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 19/146 (13%), Positives = 40/146 (27%), Gaps = 6/146 (4%) Query: 26 QLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAA 85 LW GK +I + V A+ Y + + A++ + G + + G AA Sbjct: 1 ALWEGKWIVIATTFVIAVSAVLYALSLPNIYKADALLAPAESSNGGGLSKMAGQLGGLAA 60 Query: 86 PKVSDLQETLIGRFSSAFSALAE------TLDNQEEREKLTIEPSVKNQQLPLTVSYVGQ 139 +L + + A + ++ + L L + Sbjct: 61 LAGVNLGASESSQTDLAVQVMRSRQFINTFINKHDLLVPLMAGKDWDLSNNKLILDEELY 120 Query: 140 TAEGAQMKLAQYIQQVDDKVNQELEK 165 + + QE + Sbjct: 121 NPNTGEWLRDAKGLRGATPTAQEALE 146 >UniRef50_UPI000182721C cryptic autophosphorylating protein tyrosine kinase Etk n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI000182721C Length = 732 Score = 71.1 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 30/247 (12%), Positives = 65/247 (26%), Gaps = 35/247 (14%) Query: 109 TLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLK 168 L+ K + Q L ++ G+ + L + E Sbjct: 208 KLEAINALSKSFTVKEMAKQSGMLALTLTGKDPQKITKVLNGITSNFLKQNIARQEAQDT 267 Query: 169 DNIALGRKNL-----QDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGED 223 ++A + L + + + A ++ + EA +Q + Q+ + Sbjct: 268 RSLAFLERQLPKISGELDEAEERLNAYRKQRDSVDLTLEAKAILDQVVNVENQLNELTFR 327 Query: 224 ITQDTLFLL----GSEALESMIKHEATRPLVFSPN------------------------Y 255 + + AL + + Y Sbjct: 328 EAEISQLFKKDHPTYRALREKRQTLENERSRLNHRVSTMPTTQQEILRLSRDVESGRTIY 387 Query: 256 YQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVL 315 Q ++ I R + + PKKA+ ++L + G + G V+ Sbjct: 388 LQLLTRQQELNI--SRSSAIGNVRIIDQAETQPEPIKPKKALIIVLGFVAGLALSLGYVI 445 Query: 316 GRNALRN 322 AL+ Sbjct: 446 ASVALKR 452 Score = 55.3 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 30/297 (10%), Positives = 80/297 (26%), Gaps = 22/297 (7%) Query: 3 VENNNVSG---QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTST 59 + + N ++D + LL + ++ I+ ++ LA + + + Sbjct: 1 MTSYNTDNYGAAAPQASEVDFVRLLGEAIDHRVKIVCITLLFTLLAGAWAFFTTPVYQAD 60 Query: 60 AIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER--- 116 A++ + N + G ++ +R Sbjct: 61 ALVQIESKQENGLLKNLGQLDSGLLPDATPEILLLKSRMILGETVENLGLTQQVHQRVYP 120 Query: 117 ------EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDN 170 E++ Q L + + + + + Q D N + + Sbjct: 121 VIGRLWERIQGRKPGDIQLGWLQIPHQDGKPQTLVLTVQAQGQYSLDGDNFHAQGAVGKP 180 Query: 171 IALGRKNLQDSLRTQEV--------VAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 +A + EV + + + + + + A Q+ + + Sbjct: 181 LAKAGVYVNVQSIDAEVGTEFTLKTLTKLEAINALSKSFTVKEMAKQSGMLALTLTGKDP 240 Query: 223 DITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYR 279 L + S L+ I + + + + L + ++AYR Sbjct: 241 QKITKVLNGITSNFLKQNIARQEAQDTRSLAFLERQLPKISG--ELDEAEERLNAYR 295 >UniRef50_C5S677 Putative uncharacterized protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S677_CHRVI Length = 378 Score = 71.1 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 16/301 (5%) Query: 18 IDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAM 77 + L D L L R K I+ + +A+ + ++STA++ + Sbjct: 6 LTLGDSLAILERRKWQAIVPASILFTIAVLVSLLIPPSYSSTAVMLAERLEIPPDPARTT 65 Query: 78 NVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPL-TVSY 136 + + + ++ Q G + + + RE L + + Q + + T+ Sbjct: 66 VMRHAEQRLRLIGQQVMTAGHLRT-LIERYDLYSDIRRRESLDMAVAEMRQHITIDTIRA 124 Query: 137 VGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLR 196 + ++ + ++ +L S ++ Sbjct: 125 EILDMRTGHTARQANVTWTL--SFEDGSAKITRDVTNALASLFLSENPEQRTTANPAADS 182 Query: 197 IRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYY 256 + E L A + + + Q T+ L + + +M K Sbjct: 183 LHAAAERLA-AEIDALKTRLATVERQRVDQHTISALRRDYVNAMTK---------YRELR 232 Query: 257 QTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLG 316 + ++SL+ D + + P P ++P + + L+L +L G G G VL Sbjct: 233 EQSLQTQLVQSLERDRQGER-FSLLEPPGAPETSNTPNRLLILVLGFVLAGAGGVG-VLL 290 Query: 317 R 317 R Sbjct: 291 R 291 >UniRef50_Q220Z3 Lipopolysaccharide biosynthesis n=6 Tax=Betaproteobacteria RepID=Q220Z3_RHOFD Length = 524 Score = 70.7 bits (171), Expect = 6e-11, Method: Composition-based stats. Identities = 31/255 (12%), Positives = 79/255 (30%), Gaps = 11/255 (4%) Query: 27 LWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAI-------ITQPDVGQIAGYNNAMNV 79 +W+ + ++ A+ + + +K+ +TA I +P + +A N Sbjct: 15 MWKHRWLGLLVAWAVTAIGLFVVLSVPDKYEATARIFVDTQSILKPLMSGLAVQPNVDQQ 74 Query: 80 IYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKL--TIEPSVKNQQLPLTVSYV 137 + + +S + R + +++ ++L T+E + +SY Sbjct: 75 VGMLSRTLISRPNVEKLVRMADLDLKTQSKSEHEALIDRLMKTLEIKNVGRDNLYVLSYR 134 Query: 138 GQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRI 197 + + A+ + + + + KD K + +Q + E K R+ Sbjct: 135 DTSPDKAKRVVQSLVSIFVESSLGDSRKDSKTARRFIDEQIQTYVTKLEEAEARLKQFRL 194 Query: 198 RQIQEALQYANQ-AQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPL-VFSPNY 255 R I+ A Q + ++ + + E + + S + Sbjct: 195 RNIELQNADGKDMAGQIGAVSSQLSQARLDLREAENARDSAKRQLDAEKDQNANITSRSL 254 Query: 256 YQTRQNLLDIESLKV 270 Q + Sbjct: 255 LQESAMQSSTPEIDA 269 >UniRef50_A3WQF3 Putative tyrosine-protein kinase Wzc (Fragment) n=1 Tax=Idiomarina baltica OS145 RepID=A3WQF3_9GAMM Length = 290 Score = 70.7 bits (171), Expect = 6e-11, Method: Composition-based stats. Identities = 35/278 (12%), Positives = 85/278 (30%), Gaps = 14/278 (5%) Query: 4 ENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT 63 + + N++ ++IDL L+ L K II + + + Y +A + + A++ Sbjct: 5 NPPSNTSHNNNEDEIDLRRLVGVLLDAKWLIIGITFLFMLGGVAYALLATPIYKADALLQ 64 Query: 64 QPDVGQ-----IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETL-DNQEERE 117 + + +IG + D Sbjct: 65 VEKKSSGMPALSENMADMFSQESEADTEIQIMTSRMVIGAVVDQLDLTTVSQPDYMPIVG 124 Query: 118 KLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQE--LEKDLKDNIALGR 175 + S N +L + V Q A G +L + ++ + K +A Sbjct: 125 EFLARRSEGNDELTINTFKVPQYAVGKGTQLTLLDANRYELTFEDEVVLKGKIGELAEHG 184 Query: 176 KNLQDSLRTQEVVAQEQKDLRIRQIQE----ALQYANQAQVTKPQIQQTGEDITQDTLFL 231 + R + + K + + ++Q + A + + K I Sbjct: 185 DWQLEVARAEANNTKTFKLIELSRLQAINSWKPRLAVKERGKKTGILSASMTYKDGEKAA 244 Query: 232 LGSEAL--ESMIKHEATRPLVFSPNYYQTRQNLLDIES 267 +A+ E M+++ + ++ L ++++ Sbjct: 245 RILDAITNEYMLQNIRRNAAEAQKSLDFVQEQLPELKA 282 >UniRef50_Q3K9H3 Tyrosine-protein kinase n=4 Tax=Pseudomonadaceae RepID=Q3K9H3_PSEPF Length = 740 Score = 70.4 bits (170), Expect = 7e-11, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 76/234 (32%), Gaps = 36/234 (15%) Query: 123 PSVKNQQLPLTVSYVGQTAEGAQMKLAQ----YIQQVDDKVNQEL---EKDLKDNIALGR 175 + + ++ A A L + Y+ Q + + E L+ + + Sbjct: 239 SEQGKESGIIRLALASSDAAEAVKILNKIASLYVDQNVRRTSAEAAQSLAFLQSQLPQVK 298 Query: 176 KNLQDSLRTQEVVAQEQKDLRIRQIQEA---LQYANQAQVTKPQIQQ------------- 219 ++L + K + I ++ A + ++++ ++QQ Sbjct: 299 RDLAKASDALNAYQTHGKTVNISLETQSVLGQSVALETRISELKLQQAEMDRKFTKQHPA 358 Query: 220 ----------TGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLK 269 + + A + + + V S Y Q +++ ++ Sbjct: 359 YRALMTQIGELTQQQRSLEGKVQDLPATQQELLNLTRDVEVASQIYTQLLNKSQELDIIR 418 Query: 270 VDDLDIHAYRYVMKPMLPIR-RDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 + R V + + PKKA+ +++A LG VG +VL R +L Sbjct: 419 AGA--VGNVRLVDTADVDLTSPVKPKKALIVLIATFLGAFVGVALVLLRKSLSK 470 Score = 60.3 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 34/77 (44%), Gaps = 1/77 (1%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ-PDVGQ 69 + +D + IDL+ + L K I + + Y +A + + A++ P Sbjct: 10 RENDQDSIDLLGIFGSLIDQKWLIGAFTGAFMMTGVAYAILATPVYLANALVQVEPKKND 69 Query: 70 IAGYNNAMNVIYGQAAP 86 + G+++ +++ GQ+ Sbjct: 70 MLGFSDLNSMLGGQSPS 86 >UniRef50_C7LVW8 Capsular exopolysaccharide family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LVW8_DESBD Length = 779 Score = 70.4 bits (170), Expect = 8e-11, Method: Composition-based stats. Identities = 48/337 (14%), Positives = 102/337 (30%), Gaps = 73/337 (21%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTST----AIITQP-- 65 ++IDL D L L R K I + + +T + P Sbjct: 38 PQAEDEIDLRDCLEVLVRRKWLIGGVLFAVFVTTFIVTLAMTPIYKATGKLEFNLQPPKV 97 Query: 66 -----------DVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAE------ 108 + + A + L RF++ +A E Sbjct: 98 TTFEDMLVPQTQTREFMNTQTKLLTSDSLAWRVIETLDLVHNPRFNTEITAEGEDSGGIL 157 Query: 109 -------------------TLDNQEEREKL------TIEPSVKNQQLPLTVSYVGQTAEG 143 + E +++L +E + L +++ Sbjct: 158 SDLRRMLTTMPGQGEDLDAQVREAEVQQRLLKVFLDNLEIKAERDTTILNLAFSSPDPAL 217 Query: 144 AQMKLAQYI-QQVDDKVNQEL------EKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLR 196 A+ + +I + ++++++ + L+ + + R L+ S AQ+ + Sbjct: 218 ARDVVNTFIGSFIAWQLDKKIGAAGVANEQLRKQVEVARIRLEKSEAEMNAFAQKAGIVS 277 Query: 197 IRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIK---HEATRPLVFSP 253 + + + Q+++ + LG EAL++ + A ++ +P Sbjct: 278 LDS---------RMNLVYKQLEEINSALALAHAQRLGREALDAQAREVGVSALPMVIDNP 328 Query: 254 NYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRR 290 + RQ + +ES D L V KP P R Sbjct: 329 LIQELRQQYVQLESQYEDKL------VVFKPDYPEAR 359 Score = 56.5 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 62/180 (34%), Gaps = 9/180 (5%) Query: 152 IQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYAN--- 208 + + ++ L ++L+ +D L + E + L+ R A + + Sbjct: 318 VSALPMVIDNPLIQELRQQYVQLESQYEDKLVVFKPDYPEARRLKARLDDVASKIRHEES 377 Query: 209 --QAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIE 266 Q + + + + T L + + ++ + ++ Sbjct: 378 RIQGGIRNDYLVALKNEESLRTQADLAKTSALDLNDRATQYKILEREVETNKEIHQSLLQ 437 Query: 267 SLKVDDL----DIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 K D DI + V +LP++ D P+ + L+L++ +G ++G L N Sbjct: 438 RGKEIDATVGTDISNIQVVDHALLPVKADKPRIQLNLMLSIGIGLLLGVAAAFLLEFLDN 497 >UniRef50_Q7U940 Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 8102 RepID=Q7U940_SYNPX Length = 561 Score = 70.4 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 37/298 (12%), Positives = 84/298 (28%), Gaps = 29/298 (9%) Query: 4 ENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT 63 + + Q D ++IDL + L R + I + L+ Y K W + I Sbjct: 5 PSQTLQPQQLDNDEIDLRQVAAALKRQWLLIGGITAATVLLSGIYAFTRKPVWEGSFQIV 64 Query: 64 Q-------PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER 116 + ++A N + + G +A + S + E I S + + + Sbjct: 65 LENQDVGGGRLAKLAAANPMLAGLAGVSAGESSLVTEVKILESPSVLRPTYDFVKASKAA 124 Query: 117 EKLTIEP--------SVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLK 168 + S++ + + T + + + ++++ + KD + Sbjct: 125 AGADVSKWVITDWTRSLEIELVKGTSVLSLTYRDTDEDLILPVLERITRTYQEYSGKDRR 184 Query: 169 DNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQ------IQQTGE 222 + G L+ + + + +A AN + G Sbjct: 185 RGLTQGVAYLEQEIDKLRQQSATS-----MRTAQAYALANGLGIQDGMPTGATGSTNGGS 239 Query: 223 DITQDTLFLLGSEALESMIKHEA---TRPLVFSPNYYQTRQNLLDIESLKVDDLDIHA 277 AL I L +P + ++ ++ A Sbjct: 240 VEASREAAQNQVNALRQRIAAAQRSGNTTLYKAPQLAANTEIYSQLQRVETRLQQQSA 297 >UniRef50_Q0FE97 OtnB protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FE97_9RHOB Length = 310 Score = 70.4 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 120/315 (38%), Gaps = 12/315 (3%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD 66 + ++ ++IDL DL LWRGK+ II+ IV++ A +L A+ K+T + Sbjct: 2 DNHDKSLYRDEIDLKDLFSALWRGKIFIILVSIVSVFFASFHLQSAERKYTIEYNLKPVG 61 Query: 67 VGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVK 126 + + + + A ++ + F S +++ E ++ I+ Sbjct: 62 ETKTSPSLSGLGGFASIAGIQLPTSSNNDLNIFKSLITSVEVAEIIFENKK--IIKDIFS 119 Query: 127 NQQLPLTVSYVGQTAEGAQMKL-AQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQ 185 ++ +Y + AQ + +K + + + +N+Q + + Sbjct: 120 SEWNASLNNYSRRQKTKAQTLVGNVKELLTGNKAANYVPPNPRRLAIFITQNVQINEEKE 179 Query: 186 EVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEA 245 + + + +L + A+ + ++Q D + + L + + + Sbjct: 180 TGFLKFTSETSKPDLILSLII-DAARASDKIMRQRYVDFSIEPLAFYKEKLRTARSREHR 238 Query: 246 TRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLL 305 V + + Q L+ K + + P + + +P + L L++LL Sbjct: 239 E---VLAELISKEEQKLMFASRGKHFIAEPYI-----NPTISLYPTAPNPKLILTLSLLL 290 Query: 306 GGMVGAGIVLGRNAL 320 G VGA IVL R+A+ Sbjct: 291 GLFVGAAIVLIRHAI 305 >UniRef50_B5S582 Putative tyrosine-protein kinase epsb , polysaccharide export protein epsb (Partial sequence) (Fragment) n=1 Tax=Ralstonia solanacearum RepID=B5S582_RALSO Length = 727 Score = 70.0 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 33/262 (12%), Positives = 73/262 (27%), Gaps = 10/262 (3%) Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFS-----SAFSALAETLDNQEEREKLTIEP 123 Q+ + E L + + +LD I Sbjct: 208 QVNNLTAKAGATFELERDSRLKTMEMLQDKLKIAEKGKQSGIIGASLDGTNPALTAAIMN 267 Query: 124 SVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVD-DKVNQELEKDLKDNIALGRKNLQDSL 182 + + + + + AE + + L + Q+ + E++ + N+ ++ Sbjct: 268 QIATEYVAQNIKRKAEEAERSLVFLDGLLPQLKLELERAEMKYNEMRNLRGTFDLSEEGK 327 Query: 183 RTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIK 242 + + L+ + + A + + L+S+ Sbjct: 328 AFLQESVTVETSLQELKQKRAELLTRFTASHPGVQAIDQQISVMSGKVNSMTRRLKSLPN 387 Query: 243 HEATRPLVFSPNYYQTRQNLLDIESLK----VDDLDIHAYRYVMKPMLPIRRDSPKKAIT 298 E + + + ++ V + R V +P PKK Sbjct: 388 IEQDTVRLMRDVQVDNDLYVSLLNDMQQLKLVKAGKVGNVRLVDGAAVPEEPVKPKKLTV 447 Query: 299 LILAVLLGGMVGAGIVLGRNAL 320 LA +LG ++G RNAL Sbjct: 448 TALAGVLGVVLGVMAAFVRNAL 469 Score = 57.7 bits (137), Expect = 5e-07, Method: Composition-based stats. Identities = 38/317 (11%), Positives = 90/317 (28%), Gaps = 38/317 (11%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M N ++DL+ L L + I + L Y +A+ + + Sbjct: 1 MTQNLPQPPAVNAPENELDLVRYLDVLVANRWLIAGIAAAVMLLGAAYAFLARPVYEADI 60 Query: 61 IITQPD-----VGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSS-----------AFS 104 ++ D + ++ +V A ++G+ F Sbjct: 61 MVQVEDNPNSAKSLLGDVSSLFDVKTDANAEIEILRSRMVVGKAVDNLHLYITAKPHYFP 120 Query: 105 ALAETLDNQEEREKLTIEPSVKNQ-QLPLTVSYVGQTAEGA---------------QMKL 148 + + ++ R + T+ G A Sbjct: 121 LIGAWISSRATRLSEPGLFGLGGYVWGTETIDVDGFDVPEALEGQPFKLIVLGNGRYRLE 180 Query: 149 AQYIQQVDDKVNQELEKDLKD--NIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQY 206 + + + V E + + I L NL + ++ + + +Q+ L+ Sbjct: 181 NKSLDAPIEGVVGEPLEAKQSIGTIQLQVNNLTAKAGATFELERDSRLKTMEMLQDKLKI 240 Query: 207 A---NQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLL 263 A Q+ + + T +T + + +E + IK +A L Sbjct: 241 AEKGKQSGIIGASLDGTNPALTAAIMNQIATEYVAQNIKRKAEEAERSLVFLDGLLPQLK 300 Query: 264 -DIESLKVDDLDIHAYR 279 ++E ++ ++ R Sbjct: 301 LELERAEMKYNEMRNLR 317 >UniRef50_C4FKG4 Lipopolysaccharide biosynthesis protein (Fragment) n=1 Tax=Sulfurihydrogenibium yellowstonense SS-5 RepID=C4FKG4_9AQUI Length = 176 Score = 70.0 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 56/176 (31%), Gaps = 19/176 (10%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M+ + + ++IDL +L +W + I V L + + +TS + Sbjct: 1 MQENKALKNQEICQEDEIDLFELFHIIWNNRFFIAKIVFGITILTAIISFILPKTYTSES 60 Query: 61 IITQPDVGQIAGYNNAMNVIYGQ--------AAPKVSDLQETLIGRFSSAFSALAETLDN 112 +I +A+ + G A TL R + L E L + Sbjct: 61 VIVPVTKSSSGSGLSAIAAMAGLPVGGDQATANVVAVLNSNTLRERVVKDLNLLDEILKD 120 Query: 113 QEE-----------REKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDD 157 ++ R K I+ + + + + + + AQ I+ + Sbjct: 121 KKNEFKRPYQEAGIRLKNNIKINEDKKNGTIKIEVDWKDPDKAQKINESIIKNLRQ 176 >UniRef50_C6BLZ1 Putative uncharacterized protein n=2 Tax=Ralstonia pickettii RepID=C6BLZ1_RALP1 Length = 412 Score = 70.0 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 38/294 (12%), Positives = 92/294 (31%), Gaps = 21/294 (7%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 MR ++ + + + DL LL++ W + + + + A +++S Sbjct: 1 MRNDSPVMHEEEILSD-FDLKGLLLRCWELRRKVAVFAVFFSVACFALFFWAGRQYSSEG 59 Query: 61 IITQPDVG-----------QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAET 109 + P ++ P L L RF Sbjct: 60 FMRAPRKFAEYNAQKAAFWDRETLRRYLDQNKKLDDPNGRYLLGALSERFIQKHLQAVLP 119 Query: 110 LDNQEEREKLTIEPSVKNQQL-PLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLK 168 L + R + +++ + ++++ Q+A+ AQ ++ + D + E D Sbjct: 120 LSKDDLRYITDAKGVLESVGILGFSITFKSQSADDAQARVQMMGDYIKDTMLSEDLMDTI 179 Query: 169 DNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYA----NQAQVTKPQIQQTGEDI 224 K + + Q + + +++ A A +++ Q+ TG D Sbjct: 180 YTKESETKAKKQQIDNQIIQKRLALTQAAARLEAARSIAGKYPEASKMEARQLLSTGND- 238 Query: 225 TQDTLFLLGSEAL---ESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDI 275 + +L L E+ I ++ + + Q E ++ + Sbjct: 239 KDSSRYLSPVVQLVGTETEIADLKSQLTLLERDAAQNALRNDFYERIEQRSRQV 292 >UniRef50_Q13ZQ0 Protein-tyrosine kinase n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13ZQ0_BURXL Length = 802 Score = 69.2 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 73/254 (28%), Gaps = 33/254 (12%) Query: 100 SSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTA----EGAQMKLAQYIQQV 155 + + LD + +SY G + A Y++Q Sbjct: 219 TEFYVTRYNQLDAVNGLAAGLQVTEKGRDTGVVQLSYTGTDPHAITDIANAVAQSYLKQR 278 Query: 156 DDKVNQE---LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEA-------LQ 205 ++ +E + L + R+ ++ + + + QEA L Sbjct: 279 TERAQEEASRMLTFLNGELPRLREEVKRTETALSEYQSKVGSFSFQPTQEAGVYLAGGLD 338 Query: 206 YANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNY-YQTRQNLLD 264 Y Q + Q Q + T+ + + +A + + E R + R + Sbjct: 339 YDKQLGTLRIQRAQLLQRFTEASQEVQQVDAQIAAMTREKKRFEDHFASLPSSERNAIAL 398 Query: 265 IESLKVDDL------------------DIHAYRYVMKPMLPIRRDSPKKAITLILAVLLG 306 KV + I + + +LP + PK A+ + +LG Sbjct: 399 QRDAKVAEEIYVTLLNKTQELSISRAGTIGNVHIIDEALLPSQPVRPKSALIISAGTVLG 458 Query: 307 GMVGAGIVLGRNAL 320 + G R Sbjct: 459 VIGGILFAFCRRTF 472 Score = 48.0 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 20/132 (15%), Positives = 37/132 (28%), Gaps = 6/132 (4%) Query: 10 GQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQ 69 E L DLL + +I I A+ Y +A +++ A++ Sbjct: 11 PAPSSDEDAVLRDLLRMVMDQIWWVIGIAASVILAAVLYTKIATPIYSADALLQVDAQSS 70 Query: 70 IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQ 129 G A N + ++ E+ KL S K+ Sbjct: 71 NNGSGQAQNSASLMPTVGPMHTDAEI------EIVKSRAVVEPVVEQFKLNFTTSAKSVP 124 Query: 130 LPLTVSYVGQTA 141 + +S + Sbjct: 125 VLGKISALFARP 136 >UniRef50_Q4JZ56 Capsular polysaccharide biosynthesis protein Wzd n=1 Tax=Streptococcus pneumoniae RepID=Q4JZ56_STRPN Length = 226 Score = 69.2 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 29/156 (18%), Positives = 55/156 (35%), Gaps = 5/156 (3%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYL-AVAKEKWTSTAIITQPDVGQ 69 N+ I L DLL LW K I+ V ++ Y + +TS I G Sbjct: 1 MNNRIVDISLFDLLNVLWLRKWIIVFVSFVFGCISFLYYQFFVPKTYTSDTRIYVVSKGD 60 Query: 70 IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQ 129 +NA D +E ++ + L++ E I+ S+ + Sbjct: 61 NKNLSNADLQAGS---ALTKDYKEIILSDEVLEETISDLKLESTLESLASKIKISIPAET 117 Query: 130 LPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEK 165 +++S ++ A I++V +E+ + Sbjct: 118 RIISISVTNTNSDEAARIANG-IRKVAALKIKEVTQ 152 >UniRef50_A3V8G8 Protein-tyrosine kinase n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V8G8_9RHOB Length = 618 Score = 69.2 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 41/367 (11%), Positives = 95/367 (25%), Gaps = 62/367 (16%) Query: 18 IDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAM 77 +D+ + LW GK ++++ +A+ +A Y + I + Q Sbjct: 17 VDIRHIFRVLWAGKWVVVLTTFLAVLMAGYYGFTIARPQHAAVTIIEIRTTQAFAIPGQT 76 Query: 78 NVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER--------------------- 116 + L ++ + + + N+ Sbjct: 77 STDVPPGTQVQILLATPILEQVIAKLDLQDDPAFNRYLTPVPPLSPRGLRTTLRNLLQGR 136 Query: 117 -----------------EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQ-QVDDK 158 + I L V+ + A + D+ Sbjct: 137 SEPVPDDAAIASKLVQNLRAAIRVETPRDSDLLRVTVTTGDPDRAMAIANTLAAVYLADQ 196 Query: 159 VNQELEKDL---------KDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQ 209 V ++ + ++ + ++ ++ A R ++ LQ Sbjct: 197 VARKQDATAASIALLGARSADLRSHQAAIEAAITDLVARAGLHDPTRPDRLGHDLQDTTT 256 Query: 210 AQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLV--------------FSPNY 255 + D AL++ A Sbjct: 257 RLASAQAALARASDTANTQRLTAQIAALQTNRADLAAALQALTAASHARDRMQRDLDMAI 316 Query: 256 YQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVL 315 Q ++ +L + I V+ R P+K + + +A ++GG+ G +V Sbjct: 317 AQQAGYQQELRALTLGAAQIAPDSRVLNAATEARYIGPQKLLMVQIAAMVGGLGGLMLVA 376 Query: 316 GRNALRN 322 R++LR Sbjct: 377 LRHSLRR 383 >UniRef50_Q0VR43 Tyrosine-protein kinase n=1 Tax=Alcanivorax borkumensis SK2 RepID=Q0VR43_ALCBS Length = 736 Score = 69.2 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 93/265 (35%), Gaps = 18/265 (6%) Query: 62 ITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTI 121 + + +IA N ++ Q K L T G A+ +T+ N + + Sbjct: 215 VLITRLPEIAAINRLRGMLSVQEIGKTGMLSMTATGPDKQQIKAVLDTISNVYVLQNIER 274 Query: 122 EPSVKNQQLPLT---VSYVGQTAEGAQMKLAQY-IQQVDDKVNQELEKDLKDNIALGRKN 177 + L + + + A+ KL Y ++ + E + L+ ++ L K Sbjct: 275 RSAEAENSLAFLGKQLPEIKEKLTAAEEKLNAYRLESESVDLTMETQSVLERSVGLEAKI 334 Query: 178 LQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEAL 237 + ++ E+ ++ ++ + + + + Q + I Sbjct: 335 NELKIQEGEIASRFTREHP----TYQTLIRQRRSLVE-EKNQLDQQIKDLPKT------- 382 Query: 238 ESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAI 297 + I V Y ++ LK + + R + + ++ PKK++ Sbjct: 383 QQEILRLMRDVEVTQQIYVGLLNKTQELRILKAG--TVGSVRIIDEALVQPAPIKPKKSL 440 Query: 298 TLILAVLLGGMVGAGIVLGRNALRN 322 +++A +LG AG+VL R+ L Sbjct: 441 VVVIATMLGAGAAAGLVLMRSLLSK 465 Score = 49.2 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 10/137 (7%) Query: 4 ENNNVSGQNHDPE---QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 ENN++ + ID LL L + I + +VA+ AI Y+ A + A Sbjct: 3 ENNSMKRHLSANDAEPDIDFALLLAVLVEHWLLIASTAVVAMLAAISYVMFATPIYKGDA 62 Query: 61 IITQPDVG----QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER 116 ++ ++ N AA ++ S + Q ER Sbjct: 63 LLQVEQKSSGVPGLSELNQMFEQESSTAAEIEILRSRMILREVISQLKMD---IQVQPER 119 Query: 117 EKLTIEPSVKNQQLPLT 133 L + + + P Sbjct: 120 NSLWGKMTAPDPAPPFL 136 >UniRef50_B8F354 Tyrosine kinase, chain length regulator in capsular polysaccharide biosynthesis n=4 Tax=Pasteurellaceae RepID=B8F354_HAEPS Length = 695 Score = 68.8 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 34/286 (11%), Positives = 96/286 (33%), Gaps = 20/286 (6%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 ++ ++IDL+ LL L K I + ++ ++ Y+ +A +T+ A I Sbjct: 2 NENNHDEIDLVKLLGALLDYKWWIALFTLLVTLFSVAYVLLAPPVYTANASIQVESKSSR 61 Query: 71 AGYNNAMNVIYGQAAPKVSDL---QETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKN 127 N+ V+ G+++ ++ + + Sbjct: 62 GLLNDFPGVLEGESSSSTEIAILKSRMVLSNTVEQLNLTTVVEPQFSIPFLSKGLHRLMG 121 Query: 128 QQLPLTVS-YVGQTAEGAQMKLA------QYIQQVDDKVNQE---LEKDLKDNIALGRKN 177 + L++S + + + +M L ++ D+ E +K ++ + Sbjct: 122 YEPQLSLSLFEPKNPQMKEMILEVGENAGEFSLFFADEKVLEGSIGKKYQTEDFSFAISE 181 Query: 178 LQDSLRTQEVVAQEQKDLRIRQIQEALQYA---NQAQVTKPQIQQTGEDITQDTLFLLGS 234 L+ + + L I +Q+ + Q + + I + + + + Sbjct: 182 LEAKPGQLFKIKKNDVLLAINSLQKQISVTESGKQTGIIEISINGENKAQIKKIVKSVSE 241 Query: 235 EALESMIKHEATRPLVFSPNYYQTRQNLLDIE-SLKVDDLDIHAYR 279 L +++ S + + L +++ L + +++ +R Sbjct: 242 NYL---LQNIVRDSAEASKSLEFLSKQLPELKARLAESENNLNEFR 284 Score = 54.6 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 22/217 (10%), Positives = 76/217 (35%), Gaps = 5/217 (2%) Query: 109 TLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLK 168 +++ + + + I SV L + A + L++ + ++ ++ + + Sbjct: 223 SINGENKAQIKKIVKSVSENYLLQNIVRDSAEASKSLEFLSKQLPELKARLAESENNLNE 282 Query: 169 DNIALGRKNLQ-DSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQD 227 + +L ++ + + Q + DL ++E+ + + + + Sbjct: 283 FRLKNESVDLSLEAKSALDTIVQLEADLNELTLKESEISQKFTRNHPAYVALIDKRKVLN 342 Query: 228 TLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLK----VDDLDIHAYRYVMK 283 + ++ +E + + + + + + ++ V + R + + Sbjct: 343 EEKIRLNKQVERLPNTQKEVIRLTRDLEVNQQIYIQLLNKMQELEIVKASTVGNVRILDE 402 Query: 284 PMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 + SP+K I + A +LG + + + + L Sbjct: 403 AQVLPNAVSPRKMIVVASAFMLGLIFASVTAIAKTLL 439 >UniRef50_A4C494 Exopolysaccharide biosynthesis protein, putative n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C494_9GAMM Length = 686 Score = 68.8 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 24/241 (9%), Positives = 71/241 (29%), Gaps = 10/241 (4%) Query: 86 PKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQ 145 S++ L + N L V A + Sbjct: 207 DIASNVTIAKQEISLLYRELRELNLQFDLLKRFSQKVSLANNDLNALLVINEITNAPIIR 266 Query: 146 MKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQ 205 + Q Q +L + K++ + E +++ + I + + Sbjct: 267 ELVQQKASQQAQLSQIKLR---YLDKHPTFKSMALKIADTEQQLEKEVEAFIVAMTKNK- 322 Query: 206 YANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDI 265 + ++ +++ ++ + E I+ + + ++ + Sbjct: 323 --QEVELQISELELKQQNANDLLESAIIQEQEFKKIQRSVDANIKLLESLSAKQKETELL 380 Query: 266 ESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYNA 325 + + D V + PI PKKA+ ++ ++G ++ +V+ + + + Sbjct: 381 KDI----TDSSDIIVVDPAITPISPIRPKKALIAAVSCVMGFILSIVLVILLHFFADAHR 436 Query: 326 K 326 + Sbjct: 437 R 437 Score = 68.1 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 93/286 (32%), Gaps = 20/286 (6%) Query: 12 NHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIA 71 ++IDL DLL W K I++ + A+ + + + +T + Sbjct: 6 KPAEDEIDLADLLSLFWIKKWFILVVTGIVFAIGLSIVDRMPNIYKATTTVMVKGSKANN 65 Query: 72 GYNNAMNVIYGQAAPKVSDLQETLIGRFSS----------AFSALAETLDNQEEREKLTI 121 + + + + ++ +F+ + A + + Sbjct: 66 PLQSLVPGMGSANDDLDTTIKLLKSSQFAQTIVDSLSIPATLNQYASDFTWSGDDLLTHL 125 Query: 122 EPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQ---QVDDKVNQELEKDLKDNIALGRKNL 178 ++ ++ L +S+ Q A+ + + Q Q Q + Q D I + + Sbjct: 126 SINIVSKTNLLEISFESQDAKFSAVVANQIAQAFMQYQTDLMQPHSNKSDDWINSKIQGV 185 Query: 179 QDSLRTQEVVAQE-QKDLRIRQIQEALQYANQ------AQVTKPQIQQTGEDITQDTLFL 231 +DSL +E ++ + I + A Q ++ + +Q + L Sbjct: 186 KDSLEVEEAKLMAFRQSQNVVDIASNVTIAKQEISLLYRELRELNLQFDLLKRFSQKVSL 245 Query: 232 LGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHA 277 ++ ++ +E T + Q + +K+ LD H Sbjct: 246 ANNDLNALLVINEITNAPIIRELVQQKASQQAQLSQIKLRYLDKHP 291 >UniRef50_C9RR06 Lipopolysaccharide biosynthesis protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RR06_FIBSS Length = 399 Score = 68.8 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 41/368 (11%), Positives = 101/368 (27%), Gaps = 63/368 (17%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQ-----IA 71 +I L L L K + +I I + + V K K+ ++AI+T P Q ++ Sbjct: 11 EICLRILNNDLKHFKFVAAMVIIPTIIAFVMVMWVVKPKYAASAIVTPPASTQPMSGMLS 70 Query: 72 GYNNAMNVIYGQAAPKVSDLQETLIGRFSS--------------AFSALAETLDNQEERE 117 G + + ++ + +S +E Sbjct: 71 GLMGSSGMSSLLGISMDNEDVNAVWTILNSWELHNMVIDKFDLAKHYKFKGKFHADLLKE 130 Query: 118 KLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQV-------DDKVNQELEKDLKDN 170 N++ L++ + A+ A L + + K ++ + + Sbjct: 131 FRKNFGLELNKEEMLSIYFKDTDAKLAVDVLNFMLDKADSSFNAFKTKQARQSREYFQTR 190 Query: 171 IAL-----------------------GRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYA 207 + L+ +++ + ++++ + E L Sbjct: 191 LDSCYHTLDSLLGEFVDFQVKNNVYEPNVQLEATIKYLSELQAMREEVNMELNFEKLDRG 250 Query: 208 NQAQVTKPQI------------QQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNY 255 ++ + G+ + L S L + + Y Sbjct: 251 ENSKRYQELSKRIKGVNSALGGALKGKHSNIGMIELKKSPELYAEYLRREAEIRIQEAMY 310 Query: 256 YQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVL 315 RQ + + + + P ++ SPK+ + L V + + Sbjct: 311 KVLRQQSEQMR--LEEAKTLTNLHVLEPPWQNDKKISPKRGLILAFTVFFSFFLATLLSN 368 Query: 316 GRNALRNY 323 +R+ Sbjct: 369 LVEYMRSE 376 >UniRef50_A8UTW4 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UTW4_9AQUI Length = 275 Score = 68.8 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 37/313 (11%), Positives = 98/313 (31%), Gaps = 57/313 (18%) Query: 9 SGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVG 68 + + ++IDL +L ++L + I+++V+V IA ++ YL + K + ++ +I P Sbjct: 6 KEELYYEDEIDLYELWLKLKKRWRVILVTVVVFIAASVTYLFITKPVYRTSFLIKVP--- 62 Query: 69 QIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEP-SVKN 127 +I A + + L+ A ++D +E ++ Sbjct: 63 ---------GIITPVEASEYVKSVKRLLKEKRYEEVAKLLSVDKDTVLSIHNLEARELRK 113 Query: 128 QQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEV 187 + + V+ + ++ + + + I L ++ L + + E Sbjct: 114 SKDVIGVTLEVYDPSVINGLSKAIVNYLN------HNELIAEKIELRKRELSEKIAIIEN 167 Query: 188 VAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATR 247 + K+ + ++ ++Q GE + I Sbjct: 168 RVKALKETK--------------KLVNRLVEQGGEVYFNP-----------AEID---KT 199 Query: 248 PLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGG 307 F + L ++ ++ + + + +A + Sbjct: 200 IQSFENQLVSLKVQLKALKGFEISVKPPIPEKPDKPKKK----------LIIAVAGVSSL 249 Query: 308 MVGAGIVLGRNAL 320 +G + L L Sbjct: 250 FLGVFLALFLEWL 262 >UniRef50_C5BJM9 Putative OtnB protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BJM9_TERTT Length = 295 Score = 68.4 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 40/329 (12%), Positives = 93/329 (28%), Gaps = 48/329 (14%) Query: 3 VENNNVSGQNHDP-----EQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWT 57 + N+ + + E + L+D+ LWR K +++ + V + + K+T Sbjct: 1 MSNSENPNRYYLELGSVPESLHLVDIGGALWRAKWVLLVVIAVFVGAFAVLAMITPVKYT 60 Query: 58 STAIITQPDVGQIAGYNNAMNV-IYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER 116 + ++ + + + V G P L F + F Sbjct: 61 AEVVVAEANAVARTDPGSDSAVPDIGVDLPSNEALAMITSRDFINRFI-------EDNNL 113 Query: 117 EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRK 176 + Q + A Y + + + +G+ Sbjct: 114 LPVLYRGQWNAQTQNWKL------PAEAPTLWQAYKRFS------------RRVLDVGKD 155 Query: 177 NLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEA 236 +R +Q + A+ + + E + + + Sbjct: 156 AESGLIRISVSFSQPEL---------------AAEWANKIVAEVNEVLRANAIREAEETL 200 Query: 237 LESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPK-K 295 + + T + + + + +A+R V ++P PK Sbjct: 201 AYLNQELQRTASMDLKASL-NELVKAQKARVVAANVHKQYAFRIVDPAVVPEEPAIPKLT 259 Query: 296 AITLILAVLLGGMVGAGIVLGRNALRNYN 324 + +IL +LG VG VL + ++ Sbjct: 260 LLLIILGTVLGTFVGVTGVLLHHLIQRTR 288 >UniRef50_C6ITG8 Lipopolysaccharide biosynthesis protein n=26 Tax=Bacteroides RepID=C6ITG8_9BACE Length = 367 Score = 68.4 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 50/365 (13%), Positives = 117/365 (32%), Gaps = 44/365 (12%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + +V + + +IDL+D+ ++ + + + I+ + +AI A +K+T T ++ Sbjct: 1 MSEQSVEKEP-EDMKIDLLDIFSRIIAIRKKLYKATIIGLLIAIIVWASIPKKYTVTVML 59 Query: 63 TQPDVGQ-----IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETL-----DN 112 + ++G + + L +L ++ L E L DN Sbjct: 60 SPEMSSDKGSNGLSGLAASFLGGGSSFSSGTDALNASLSSDIVASTPFLLELLNIEVVDN 119 Query: 113 QEEREKLTIEPSVKNQQLPLTV------------------SYVGQTAEGAQMKLAQYIQQ 154 E + + + + + + + L + ++ Sbjct: 120 GEVKRLSDYLDTESFPWWSYIIGAPSRIIAGVQSLFINERKFSSEKLQDGIIILNKKVKG 179 Query: 155 VDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQ--IQEALQYANQAQV 212 D + + + + A+ ++ V + R+++ I A + V Sbjct: 180 QIDVLKKNITATIDKKTAITNVSVTLQNPRITAVVADSVIHRLQEHIIDYRTSKAKEDCV 239 Query: 213 ----------TKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNL 262 + Q DT L +++ + + Y Q L Sbjct: 240 YLEKLFEERKQEYYAAQKKYAKYVDTHDNLVLQSIRVEQERLQNDMSLAYQVYSQVINQL 299 Query: 263 LDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGI-VLGRNALR 321 I KV + + V P++P++ + ++L V + G +LGRN L Sbjct: 300 -QIARAKVQEEK-PVFAVVEPPVVPLKPSGIGVKLYVLLFVFFSLFITIGWELLGRNILE 357 Query: 322 NYNAK 326 + Sbjct: 358 WLKKQ 362 >UniRef50_Q48452 Putative tyrosine-protein kinase in cps region n=16 Tax=Enterobacteriaceae RepID=YC06_KLEPN Length = 722 Score = 68.4 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 34/250 (13%), Positives = 77/250 (30%), Gaps = 16/250 (6%) Query: 76 AMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLT-- 133 N+ L + +G + +++ + ++ + + + L Sbjct: 216 QENLSVADQGKDTGILILSYLGDDPLKIKNIVDSISENYLAQNISRQAAQDEKSLEFLNK 275 Query: 134 -VSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQ 192 + V + A+ KL + ++ D K + D I L + Sbjct: 276 QLPMVRSDLDSAEDKLNDFRKRNDSVDLSLEAKSVLDQIVNVDNQLNEL---------TF 326 Query: 193 KDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFS 252 ++ I Q+ +A + K + Q + + + I + Sbjct: 327 RESEISQLYTKEHPTYKALMEKRKTLQDERGKLNKRVATMPET--QQEILRLSRDVESGR 384 Query: 253 PNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAG 312 Y Q ++ K I R + + + PKK I ++ + +G ++ Sbjct: 385 AVYMQLLNRQQELNIAKSSA--IGNVRIIDSAVTQHKPVKPKKIIVVLAGLFIGLVISVS 442 Query: 313 IVLGRNALRN 322 +VL R LR Sbjct: 443 LVLVRILLRK 452 Score = 56.1 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 41/296 (13%), Positives = 98/296 (33%), Gaps = 20/296 (6%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + + + Q + +D ++ +L + II A +A+ Y A + + A+I Sbjct: 1 MTSISKKKQPETVDDLDFGRMVGELIDHRKIIIALTSFATLIALLYAFFATPIYKADALI 60 Query: 63 TQPDVGQIAGYNNAMNVIYGQAAPKVSDL----QETLIGRFSSAFSALAETLDNQEERE- 117 A +N ++ ++ ++G+ + A Sbjct: 61 QVEQKQANAILSNLSQMLPDSQPQSAPEIALIQSRMILGKTVDDLNLQAVVSPKYFPIFG 120 Query: 118 ----KLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIAL 173 +L+ E Q L VS E + ++ + V + +++ + Sbjct: 121 RGWARLSGEHQGNIQLSRLYVSSSIGD-EENPPEFTLKVKDSNRYVIEFGGEEINGKVGE 179 Query: 174 GRKNLQDSLRTQEVVAQ---------EQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDI 224 + +L+ E+ A+ K I +QE L A+Q + T I D Sbjct: 180 LIEKDGITLKIDEINAKPGAEFTIKYVSKLKAIADLQENLSVADQGKDTGILILSYLGDD 239 Query: 225 TQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIES-LKVDDLDIHAYR 279 ++ S + + ++ + + + + L + S L + ++ +R Sbjct: 240 PLKIKNIVDSISENYLAQNISRQAAQDEKSLEFLNKQLPMVRSDLDSAEDKLNDFR 295 >UniRef50_D1C2W2 Capsular exopolysaccharide family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C2W2_SPHTD Length = 544 Score = 68.1 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 36/304 (11%), Positives = 81/304 (26%), Gaps = 46/304 (15%) Query: 20 LIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNV 79 L LWR + ++++V+ A+ +A+ + + +TA ++ Sbjct: 3 LRAYAAILWRRRWIVLLTVLTALGVAVTANRLVTPVYVATATARVSVTSG--------SI 54 Query: 80 IYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQ 139 Y P +D ++ S + + + I + L +S + Sbjct: 55 DYVIRDPTYTDRLLNTYLTLVTSHSVREQVAEELKLSSLPEISGTAPANSELLNISAAHR 114 Query: 140 TAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQ 199 A + V A ++N + E A+ Q+ L + Sbjct: 115 DPAMAAAIANAAATALAAHVE-----------AAQQENPETRQALGEDFAEAQQALLEAR 163 Query: 200 IQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTR 259 ++ + D D + + Y + Sbjct: 164 LRY---------------ESLAADPQADPT----------EVAAARIELDMRQQEYNSLQ 198 Query: 260 QNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 + D + P SP + + L L + +G + G+ Sbjct: 199 AQYDRARVTEATRSDKIV--LADPAVPPESPSSPNQLLNLALGLGVGLVGAVGLAFLVEN 256 Query: 320 LRNY 323 L + Sbjct: 257 LDDR 260 >UniRef50_A9WAT9 Lipopolysaccharide biosynthesis protein n=2 Tax=Chloroflexus RepID=A9WAT9_CHLAA Length = 443 Score = 67.7 bits (163), Expect = 5e-10, Method: Composition-based stats. Identities = 30/274 (10%), Positives = 84/274 (30%), Gaps = 26/274 (9%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN 74 ++IDL L L R I+ + + L + T++ + + Sbjct: 2 NDEIDLRPYLSALLRRWWIILGTALGVALLVGVLAWIRTPPHTASTSLLIVPASAQVTLD 61 Query: 75 NAMNVIYGQAAPKVSDLQETLIGRFSS--------AFSALAETLDNQEEREKLTIEPSVK 126 N + +E L+G A L + + L+ +++ Sbjct: 62 NRFTSRDSLLFTTTVNQREALLGLARDATLEERVAAILESEGRLPDGYQLGNLSQRITIE 121 Query: 127 NQQLPLTVSYVGQTAEGAQMKL----AQYIQQVDDKVN---------QELEKDLKDNIAL 173 + ++ TA+ A+ +Y + V++ ++ + ++ + Sbjct: 122 TDGDLVRITARADTADDARRLAILWGQEYTRLVNETYTRDTSSLELVEQQLTEARERYQM 181 Query: 174 GRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLG 233 + L+ + E+ A EQ+ R+ + + + A + L Sbjct: 182 AQAELEAFIAQGELAAAEQEVRRLSDLVNSARAAGTDRFADYL-----RRANDIEQILRD 236 Query: 234 SEALESMIKHEATRPLVFSPNYYQTRQNLLDIES 267 ++ L + ++ + + + ++ Sbjct: 237 AQLLRQRLGDQSADEVNVADALAALLLRIRNLSD 270 >UniRef50_D1PA57 Chain length determinant protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PA57_9BACT Length = 360 Score = 67.7 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 45/346 (13%), Positives = 114/346 (32%), Gaps = 41/346 (11%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + + + + +I+L+ + L K I+I + +A L + + + ST ++ Sbjct: 1 MRKDIENKNCNKQIKINLVSCIKILLADKRYILIYIFIAGILGLIVAFTTPKTYKSTVML 60 Query: 63 TQ-----PDVGQIAGYNNAMNV----------IYGQAAPKVSDLQETLIGRFSSAFSALA 107 G I+ + + + +Y + P + + +IG F+ Sbjct: 61 APEESGAGFSGSISSLASMVGMNMKIGQSGDALYPEIYPDLVSSTDFIIGLFNVKIRTKD 120 Query: 108 ETLD-------NQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQY-IQQVDDKV 159 + + +++ L P ++ + T K+ + + + + + Sbjct: 121 NLIMCDYYTYLKEHQKKALMDWPLAALSKVIEKFTQKDITPHRENNKINPFWLTKDEANI 180 Query: 160 NQELEKDLKDNIALGRKNLQDSLRTQEVVA------QEQKDLRIRQIQEALQYAN----- 208 + E+++ + + S+ Q+ + + L+I + A Sbjct: 181 AKATEQNINCIVDKKTSVITISVTDQDPLVAALMADSVKAHLQIAITNYKTKKARVDLKY 240 Query: 209 -----QAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLL 263 + + D L ++ + + + Y Q + L Sbjct: 241 MEKLFDEARKQYDKARQQYGAAADADMDLSLQSYKLKTEDLENDMQLKYNIYQQVVEQL- 299 Query: 264 DIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMV 309 + KV + A+ V +PIR S K +T+ + + LG +V Sbjct: 300 QLAQAKVQE-KTPAFTVVQSASVPIRPSSRSKIMTIFIWMFLGFIV 344 >UniRef50_B2JS55 Capsular exopolysaccharide family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JS55_BURP8 Length = 736 Score = 67.3 bits (162), Expect = 6e-10, Method: Composition-based stats. Identities = 34/245 (13%), Positives = 75/245 (30%), Gaps = 34/245 (13%) Query: 109 TLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGA----QMKLAQYIQQVDDKVNQELE 164 +L E + + +++SY + A Q +Y++Q + ++E Sbjct: 223 SLSVVERLQLDVVALEQGKDSGIVSISYQNEDPTLATRTLQEITQEYVRQNVARNSEEAA 282 Query: 165 KDLK---DNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTG 221 K L+ D + R L+ + + + I +AL V Q Sbjct: 283 KSLQFVRDQLPKVRGELEKAQTALKDFELSSHSVDIGLETKAL-LDQVVSVETNIQQVRM 341 Query: 222 EDITQDTLFLLGSEALE------SMIKHEATRPLVFSPNYYQTRQNLLDI-ESLKVDDLD 274 + + F G L + + + N T+++LL + ++V Sbjct: 342 QQVDAQQRFQAGQPTLRVLDDQLAQLNSKKASLKAQISNLPDTQRHLLQLTRDVEVSSRT 401 Query: 275 ------------------IHAYRYVMKPMLPIR-RDSPKKAITLILAVLLGGMVGAGIVL 315 + R V P + P++++ ++ + G V V Sbjct: 402 YTDLLTQAQQLDVARAGTVGNVRVVDVPEVDTTAPVRPRRSMIILCGLFAGLAVSMLTVY 461 Query: 316 GRNAL 320 + Sbjct: 462 IKRTF 466 Score = 57.3 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 16/105 (15%), Positives = 36/105 (34%), Gaps = 1/105 (0%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD 66 + + ++ID ++L L K I+I + L++ Y + + + A++ Sbjct: 2 SSETKLKRDDEIDFRNILGALIDHKRLILIITGTFVTLSVLYSILTAPVYEADAMLQVEH 61 Query: 67 VGQIAG-YNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETL 110 G M+ + A + + R + A L Sbjct: 62 RLPTGGTMMAGMDQLLNTANAEAVTEIALITSRSVVGKAVNALKL 106 >UniRef50_Q1AYJ4 Protein-tyrosine kinase n=3 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AYJ4_RUBXD Length = 492 Score = 67.3 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 52/162 (32%), Gaps = 4/162 (2%) Query: 2 RVENNNVSGQNHDPEQI--DLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTST 59 R N ++I L +LL LWR I + + A A G+ + + ++ Sbjct: 10 RRSTNGPEAGPPPDDEIVISLDELLRVLWRRAWIIALVAGLLTAAAAGFSLLRTPIYEAS 69 Query: 60 AIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKL 119 I A N +V+ Q + + E L R + L E Sbjct: 70 IQIVIGQREGAAPTNLGSDVMGLQQLTR--TMAEVLESRTVANAVIREMNLPTDAETFLE 127 Query: 120 TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ 161 + + + VSY E AQ + ++V+ Sbjct: 128 NMTVEPVTETQVIEVSYRDPDPERAQQVANTIGRVFSEQVSD 169 Score = 42.2 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 19/52 (36%) Query: 272 DLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 + + LP SP+ +A++LG M+G G L + Sbjct: 173 SANAVTATVWERAQLPDEPVSPQPLRNAAMALVLGLMLGTGAAFLVEHLDDR 224 >UniRef50_B8HNB0 Capsular exopolysaccharide family n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HNB0_CYAP4 Length = 750 Score = 67.3 bits (162), Expect = 7e-10, Method: Composition-based stats. Identities = 42/278 (15%), Positives = 88/278 (31%), Gaps = 13/278 (4%) Query: 48 YLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALA 107 Y V + + + A+++ + G + + V Q + + Q + S ++ Sbjct: 209 YGLVTPDAY-AEAVVSTRMELEKQGKDAEIAVKTTQRQLEEVNQQLADLKVNPSQAVPIS 267 Query: 108 ETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTA--EGAQMKLAQYIQQVDDKVNQELEK 165 L + ++ T V+ +++ E + + A ++ + + N L Sbjct: 268 VLLQDSNYQKLTTRLQEVELSLAQQSLTLQNNHPTIENLRAERADLLKLMRQRANGLLRT 327 Query: 166 DLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDIT 225 L ++ + VV QI A Q A + + Q QQ E Sbjct: 328 QLNRDLTTLPSSASSGSSDGSVVQGLTDKALEAQISLATQTAQLNGIRQAQ-QQVAERFQ 386 Query: 226 QDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPM 285 L+ +K F + R + ++R + Sbjct: 387 ALPQLQQQYAELQRQLKVNEDVVGRFMERLQELRI---------AEAQRTTSWRVLEPAY 437 Query: 286 LPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 LP SP + ++L + G + G G+ L L + Sbjct: 438 LPTAPISPNMSRAILLGLFAGVLAGIGLALLIERLDSR 475 Score = 51.5 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 40/273 (14%), Positives = 76/273 (27%), Gaps = 22/273 (8%) Query: 19 DLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT------QPDVGQIAG 72 D ++LL L + + + + + A Y A+ + S A+I P +I Sbjct: 25 DKVELLRTLKKRWIPALATAVTVFAGCYIYSALQTPLYRSEALILTGKEQSTPLGEEINS 84 Query: 73 YNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPL 132 ++ N +L+ + L+I L Sbjct: 85 TSSYSNWSNPLINEIQVLQSSSLVTKAQQQLKPPHNKTSVGSIAGGLSITQ--VGDSDVL 142 Query: 133 TVSYVGQTAEGAQMKLAQ----YIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVV 188 V+Y G + Q L YI +K ++ + I Q L Sbjct: 143 KVTYTGTDPKTVQAILDALNKTYIDYSLEKRRSQVSSGV-RFIEEQLPAAQAKLAQSAQA 201 Query: 189 AQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRP 248 + + +A A + + + Q +I T E + + P Sbjct: 202 VRNFRKQYGLVTPDAYAEAVVSTRMELEKQGKDAEIAVKTT-QRQLEEVNQQLADLKVNP 260 Query: 249 --------LVFSPNYYQTRQNLLDIESLKVDDL 273 L+ NY + L ++E Sbjct: 261 SQAVPISVLLQDSNYQKLTTRLQEVELSLAQQS 293 >UniRef50_B6BQX7 Chain length determinant protein n=1 Tax=Candidatus Pelagibacter sp. HTCC7211 RepID=B6BQX7_9RICK Length = 352 Score = 67.3 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 46/301 (15%), Positives = 102/301 (33%), Gaps = 33/301 (10%) Query: 10 GQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQ 69 I+ I++L +W GK+ I + I+ + +GY + + + I Sbjct: 6 PLYRYNNDIEFIEILQIIWNGKVKIFLITIIFTLIGVGYTSKIPNSFKLSITIQPSKNSN 65 Query: 70 IAGYNNAMNVIYGQAAPKVSD----------------LQETLIGRFSSAFSALAETL--- 110 + ++ + + T+I RF F E + Sbjct: 66 FVKFIPINQMLISSLLNNSTQKHFTNQQLEINQELQVNEITMIDRFVKEFLDFEEFINVL 125 Query: 111 --DNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLK 168 ++ + L E + Q L + Q + L Y+ ++ ++E K L Sbjct: 126 ESNSYIDENTLQTEIERQRQMLKYSKLLSLQRLDETNKDL-GYVIKLIWGDSEEGLKILS 184 Query: 169 DNIALGRKNLQDS--------LRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQ---I 217 + + L + NL S L+ ++ + + + RI + E A + + + Q + Sbjct: 185 ETLNLTKINLHKSVFKDLDYFLKIKKEIKISENESRILFLTEQSAIAKELNIAENQVDTV 244 Query: 218 QQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHA 277 + I + L+ + L+ + Y ++ IE LK + +++ Sbjct: 245 NLPQDKIAVNVTTNNIGYYLQGYKAIDKEISLIENREYKDIKKIKERIEILKTEKINLVD 304 Query: 278 Y 278 Y Sbjct: 305 Y 305 >UniRef50_A8GFV4 Non-specific protein-tyrosine kinase n=4 Tax=Enterobacteriaceae RepID=A8GFV4_SERP5 Length = 727 Score = 66.9 bits (161), Expect = 8e-10, Method: Composition-based stats. Identities = 42/264 (15%), Positives = 92/264 (34%), Gaps = 12/264 (4%) Query: 57 TSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER 116 T+ I+ P + N ++V G + +L G A+ +++ + + Sbjct: 203 TTFTIVNVPRQKAVDDLRNMLDVAPGGKESGIMTF--SLAGEDPQRAEAVLKSITDNYLQ 260 Query: 117 EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRK 176 + + + + L + +T Q Q + +L + K + Sbjct: 261 QNVDRKTEEAQRMLAFLHEQLPRTQSSLNNAENQLNQFRQQNDSVDLSLEAKSVLDTQ-V 319 Query: 177 NLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEA 236 L+ L K+ I ++ + A +A + K + + + L Sbjct: 320 QLEGQLNELTF-----KEAEISKLYTRVHPAYRALLEKRATLEAEKARLGKQVQSLPKT- 373 Query: 237 LESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKA 296 + I V Y Q ++ K + R + + +R P+KA Sbjct: 374 -QQEILRLTRDVQVDQQVYMQLMNKQQELSISKAG--TVGNIRIIDEAETGLRPVQPQKA 430 Query: 297 ITLILAVLLGGMVGAGIVLGRNAL 320 + ++ A+L+GG++ A +V+ R AL Sbjct: 431 MIVLFALLMGGVLSASVVVLRAAL 454 Score = 53.0 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 2/112 (1%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M N ++++ L+ LW + I++ VA L Y +A + +TA Sbjct: 1 MMKNNALPIVMAEQDDKLEWERLIGPLWDNRWRILLVTGVAGILGCAYALMATPIYQATA 60 Query: 61 IITQPDVGQIAGY--NNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETL 110 ++ + I G + E + + + L Sbjct: 61 LVQVEKQLSGDSLLRETLDSSIGGSIGQNSATQDEVSLAKSRYVIGKTVDDL 112 >UniRef50_B3QV13 Lipopolysaccharide biosynthesis protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QV13_CHLT3 Length = 251 Score = 66.9 bits (161), Expect = 8e-10, Method: Composition-based stats. Identities = 33/282 (11%), Positives = 82/282 (29%), Gaps = 38/282 (13%) Query: 14 DPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDV---GQI 70 + E+I+L+++ L K+ I+ + L + Y A + ++ ++ Sbjct: 3 EDEKINLLEVWNILIGRKVIILSVTLFVQFLTVLYALFATPIYRGEVLLAPAQEDNRSKM 62 Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLD--NQEEREKLTIEPSVKNQ 128 + + A L I + + + A D N+E + E Sbjct: 63 SILAAQYGALASLAGFDFGGLNSNKIDEYIALIKSRAFIADFINEENLMPILFEDDWNKD 122 Query: 129 QLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVV 188 + V G +L DK + L + + + + Sbjct: 123 ENKWMVEKNDIPTIGKAYELFSKDIITIDKDKESGLVSLSIDWRDSVLAANWANKIVKKF 182 Query: 189 AQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRP 248 QK ++++ +++L + N K Sbjct: 183 NNYQKRVQVQDSKKSLDFIN---------------------------------KQLENTS 209 Query: 249 LVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRR 290 +V + N + + + D A++ + ++P ++ Sbjct: 210 IVENKNTLYKLIEMNTKTLMIAEITDEFAFKVLDPAVVPEKK 251 >UniRef50_B2JT53 Capsular exopolysaccharide family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JT53_BURP8 Length = 800 Score = 66.9 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 32/245 (13%), Positives = 64/245 (26%), Gaps = 33/245 (13%) Query: 106 LAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGA----QMKLAQYIQQVDDKVNQ 161 +D + + + + Y A Y+ + + Sbjct: 219 RYSDVDAIARLHRQLQVMELGKDTGVIQILYESSDPLLAMHVTDAIAKTYVAAHIAQRRE 278 Query: 162 ELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDL---------RIRQIQEALQYANQ-AQ 211 E + L + L+D LR EV + + +Q +L +A + A Sbjct: 279 EASETL-AFVDGELPRLRDELRQAEVRLSDYQTAVGSIKPDPESTMYLQGSLDFAREIAN 337 Query: 212 VTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVD 271 V + + + L+ +I + FS R +K Sbjct: 338 VRLQRTRLLEQFTPDSAQVRTADNQLKQLISEKEAFEARFSTLPLAVRTTADLTRDVKAA 397 Query: 272 DL------------------DIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGI 313 + + V + P R PK+ + + G ++G Sbjct: 398 NDIYLAMLNKSHELDVTRAGTLGNVHIVDTALWPSRPVKPKRLLIVASGAGAGVILGVLF 457 Query: 314 VLGRN 318 V R Sbjct: 458 VFVRQ 462 >UniRef50_C9RP30 Capsular exopolysaccharide family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RP30_FIBSS Length = 718 Score = 66.9 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 64/232 (27%), Gaps = 35/232 (15%) Query: 124 SVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLR 183 Q + SY + + A L + + + + + K L Sbjct: 228 EKGKQTGIIEASYNHRYPDRAAAILNTIAKTYLRQNVEMRSAEAAKTLEFLEKQLPGVKA 287 Query: 184 TQ---------------------EVVAQEQKDLRIRQIQEALQYANQAQVT--------- 213 E A K+ I++ L+ QA + Sbjct: 288 KLDSVEKILADYRYSIGSVDMTGETHAHLNKESEIQRQILDLEQQKQAAMRLFKEEHPSV 347 Query: 214 KPQIQQTGEDITQDTLFLLGSEAL---ESMIKHEATRPLVFSPNYYQTRQNLLDIESLKV 270 + I+Q + +E + + + V + Y N+ + ++ Sbjct: 348 QTLIRQQNRLRAELAKLKKTAEKMPLTQQEVARLKEDVAVNNEIYTTMLNNIQQLRVVRA 407 Query: 271 DDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRN 322 + + R V + PKK +I +V M+G +V + N Sbjct: 408 GE--VGNVRIVDFAQINGAPSKPKKMNIIICSVAASFMLGVLLVFLLRMMHN 457 Score = 46.5 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 37/296 (12%), Positives = 85/296 (28%), Gaps = 34/296 (11%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 + + I L++ L LW K + + +IV A+ + ++TS ++ Sbjct: 10 ISQPTAIQVPQNANTITLLEALEILWDKKFILALFLIVGGAVGYCVANWLRPQYTSDVLL 69 Query: 63 TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETL------------ 110 G +G A E L R ++ E L Sbjct: 70 QIDVKGGKSGKAIGDMGALLDVASPADAEIELLKSRMILSYVVDVEHLCFQATPIGAADR 129 Query: 111 ----DNQEEREKLTIEPSVKNQQLPLTV----SYVGQTAEGAQMKLAQYIQQVDDKVNQE 162 + + + + L I + ++ V +Y + E Q+ L + ++ Sbjct: 130 FLHHEGRMDLDSLYIPQIARAEKWMARVTGDDTYEVISPEE-QVILEGKVGEMHR----- 183 Query: 163 LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGE 222 D + + +++Q + ++ +L+ A + + T Sbjct: 184 -AAYAGDTFDIQVSRMLAQPEQMFILSQISDLGAMGALKASLKVAEKGKQTGIIEASYNH 242 Query: 223 DITQDTLFLLGS-------EALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVD 271 +L + + +E A + L +E + D Sbjct: 243 RYPDRAAAILNTIAKTYLRQNVEMRSAEAAKTLEFLEKQLPGVKAKLDSVEKILAD 298 >UniRef50_D2PZ20 Lipopolysaccharide biosynthesis protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PZ20_9ACTO Length = 540 Score = 66.5 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 39/302 (12%), Positives = 84/302 (27%), Gaps = 45/302 (14%) Query: 21 IDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT------QPDVGQIAGYN 74 D L R K I+ V++ IA A + V ++WT+++ + VG++ Sbjct: 9 RDTAQALLRHKWLILGCVLLGIAGAAVFSLVQTQRWTASSQVVIGPAVPPALVGKLPTGA 68 Query: 75 NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTV 134 + + + + S +L ++ + ++ + Sbjct: 69 DKTGPLGMDLPAETQARVMSSPALLRSVAKSLGMPTSDESAQSLASVTRVKAVTDNAYLI 128 Query: 135 SYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKD 194 + G TA+ A + + + N E + L +A ++ + Q Q Sbjct: 129 TIDGPTADEAVRRANAIGRIYLAQRNNEAKA-LLTTLAGQAQDRSRTAAAQSRTLVSQIS 187 Query: 195 LRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPN 254 I + A + ++ E +AL + Sbjct: 188 EAIAR----GDTQTAAALRDQRVGLATEARQAADEASAMRKALS---------GIGTGSE 234 Query: 255 YYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIV 314 V SP + + +LG ++G G+ Sbjct: 235 L-------------------------VSPATKETATSSPLVLRDITVGGILGLVLGFGLA 269 Query: 315 LG 316 L Sbjct: 270 LL 271 >UniRef50_Q97SJ6 Capsular polysaccharide biosynthesis protein cpsC n=114 Tax=Streptococcus RepID=CPSC1_STRPN Length = 230 Score = 66.5 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 57/164 (34%), Gaps = 2/164 (1%) Query: 17 QIDLIDLLVQLWRGKMTIIISVIVAIALAIGYL-AVAKEKWTSTAIITQPDVGQIAGYNN 75 +ID+ L+ LW+ K+ I+I +V A A Y + K ++TST I + Q Sbjct: 8 EIDVFQLVKSLWKRKLMILIVALVTGAGAFAYSTFIVKPEYTSTTRIYVVNRNQ-GDKPG 66 Query: 76 AMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVS 135 N V D +E ++ + LD + I+ +V +++S Sbjct: 67 LTNQDLQAGTYLVKDYREIILSQDVLEEVVSDLKLDLTPKGLANKIKVTVPVDTRIVSIS 126 Query: 136 YVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQ 179 + E A + K+ + R + Sbjct: 127 VNDRVPEEASRIANSLREVAAQKIISITRVSDVTTLEEARPAIS 170 >UniRef50_B3C5B9 Putative uncharacterized protein n=1 Tax=Bacteroides intestinalis DSM 17393 RepID=B3C5B9_9BACE Length = 370 Score = 66.1 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 42/358 (11%), Positives = 99/358 (27%), Gaps = 66/358 (18%) Query: 19 DLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMN 78 D I LL +LW +M ++ + +V + + I +++ ++ + + Sbjct: 12 DYILLLFKLWDARMFLLKTSMVGLLIGILIFISIPKEYETSIYTVPESTSGKIDTDEGFS 71 Query: 79 VIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVG 138 K+ D S + + + + I S + LT+S Sbjct: 72 SEVSIGGKKIQDA------IIPSLYPEVVSSTPFLLSLFDIPITLSNNKELSTLTLSEYM 125 Query: 139 QTAEGAQMKLA------QYIQQVDDKVNQELEKD-------------------------- 166 T + + Q I +++ D Sbjct: 126 STHQRSPWWNTIRVGILQIISFPITIFSEKETNDTSNLQPTSHQHGETIDIFHLSKREIA 185 Query: 167 --------LKDNIALGRKNLQDSLRTQEVVAQEQKDLRIR-----------------QIQ 201 + ++ ++ + +R Q+ + + ++ Sbjct: 186 IAAAINSRINVDVDKKKRTVTLHIRMQDPLVSATVADSVMAKLQKFVSDYRTKKECINLE 245 Query: 202 EALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQN 261 A QA+ + Q+T L + + + + + Y +T Q Sbjct: 246 HAENLYQQARKRYYEAQETYAHFADANQ-SLSLKLYQKELYNLQIAKDIAYKEYTETLQQ 304 Query: 262 LLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 L + + + +P+ SP K L + LL +G G + + Sbjct: 305 LQFAKIRVYKKR--PVFAIIEPATVPLSPVSPSKIKILSVIFLLSLAMGCGWIYFKTM 360 >UniRef50_A8F8H6 Lipopolysaccharide biosynthesis protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F8H6_THELT Length = 676 Score = 66.1 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 32/244 (13%), Positives = 79/244 (32%), Gaps = 10/244 (4%) Query: 84 AAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEG 143 + + +D I ++ S + + + E K + K Q ++ + Sbjct: 211 SLSEQADNLVKYIAQYDSKTNEITLNIQQAEVEIKAAEDLLKKVDQKIISSETISTNPVV 270 Query: 144 AQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEA 203 Q++ QV + + + +K ++++ + + ++ + A Sbjct: 271 QQLRSKLVDLQVQLSALLQNYSEDDRRVVALKKQIEETQDLLQKEISKVVSAEVQTVNPA 330 Query: 204 LQ------YANQAQVTKPQIQQTGEDITQDTLFLLGS--EALESMIKHEATRPLVFSPNY 255 QA++ Q + + +D S A+E + Y Sbjct: 331 YTQLYTNFILKQAELQVLQATLSAVEKIRDEYLKKVSVIPAIEQKLFELERERQAKQTTY 390 Query: 256 YQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVL 315 + + +D R + ++P + P K +T+ + +LG +G V Sbjct: 391 LALLSQYEEAKIGAAGSID--NIRIISNAVVPNKPSKPNKRLTVAIGGVLGIFLGILTVF 448 Query: 316 GRNA 319 R+A Sbjct: 449 LRDA 452 Score = 61.1 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 34/281 (12%), Positives = 89/281 (31%), Gaps = 25/281 (8%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYL-AVAKEKWTSTAIITQPDVGQ 69 N++ ++ L D++ R + ++ +++ Y+ AK + ++A + Sbjct: 1 MNNENTELSLADIMNIFKRRIWWFLAIFLITSFISVIYVMFFAKPVYEASAQLLVRTSQS 60 Query: 70 IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALA-----------------ETLDN 112 +A+ + G + T I S + E D Sbjct: 61 SISIPSAVTQLIGISNVSGGSDISTEIELIKSRDNIEKLIEKLNLMELFKDQKKIELQDV 120 Query: 113 QEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIA 172 E + ++ + +S + + A + I + ++ + + Sbjct: 121 VEVIREKWLKVESVKDTKIIKISIEHEDPKLAAEMVNNLIDIYQEMRSELTTNESVVKLR 180 Query: 173 LGRKNLQDSLRTQEVVAQEQKDLRIRQI-----QEALQYANQAQVTKPQIQQTGEDITQD 227 K L + + V +E K + ++A + + +I Q Sbjct: 181 FIEKQLPRIEQELKDVEEEIKKFKEENQIYSLSEQADNLVKYIAQYDSKTNEITLNIQQA 240 Query: 228 TLFLLGSEALESMIK--HEATRPLVFSPNYYQTRQNLLDIE 266 + + +E L + ++ + +P Q R L+D++ Sbjct: 241 EVEIKAAEDLLKKVDQKIISSETISTNPVVQQLRSKLVDLQ 281 >UniRef50_UPI0001C16095 Lipopolysaccharide biosynthesis n=2 Tax=Nostocaceae RepID=UPI0001C16095 Length = 746 Score = 66.1 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/292 (9%), Positives = 84/292 (28%), Gaps = 17/292 (5%) Query: 11 QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQI 70 + + IDL + L R + I++ + + AI Y K + + + + Sbjct: 21 NKKETDVIDLQIYWLILKRRWLVILLVIASVLGAAISYTYSQKPVYQAKGKLLFEKKDGV 80 Query: 71 AGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDN-----------QEEREKL 119 + + + + + + +T++ + +R Sbjct: 81 SSLTSLATSVGELGGLGNNSNPIDTEAEVIRSHPLITKTINQLGIKNTKGEPIEIDRFLK 140 Query: 120 TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDK---VNQELEKDLKDNIALGRK 176 ++ + +SY + A + ++ D +N+ + ++ Sbjct: 141 QLKLQTIRGTDVMELSYSSTNPQEAADTVNTLMKYYLDNNILINRSEATAARKFLSQELP 200 Query: 177 NLQDSLRTQEVVAQEQKDLR--IRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGS 234 ++ + E+ + K++ + EA I Q + + L Sbjct: 201 RIEKQVIKAELELRRFKEINRVVALDAEAKVGIETLGRINEVITQAQGQLAAASTRSLAL 260 Query: 235 EALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPML 286 + E + + L +Q L + + + + P + Sbjct: 261 QN-ELQLTTQQAVALSNISQIPGVQQVLTEYQKTQQELAIAETTYTSDNPKV 311 Score = 53.8 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 69/189 (36%), Gaps = 3/189 (1%) Query: 133 TVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKD-LKDNIALGRKNLQDSLRTQEVVAQE 191 ++ +T + + Y VN +L++ LK + + + + Sbjct: 286 VLTEYQKTQQELAIAETTYTSDNPKVVNLQLKEQALKKQLQERVSQTLGNAEVLQQSNLQ 345 Query: 192 QKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVF 251 +L+ Q+ ++ + Q++ + L LE + V Sbjct: 346 IGELKQGLTQDLVRSEVERLALANQVKALQSVFIINKRRLDSLPRLEQQQLQLQRQLQVA 405 Query: 252 SPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGA 311 Y Q + L +++ L ++ ++ R + ++P SP+ A+ + + L+G ++G Sbjct: 406 QGTYQQLLKQLQEVQVL--ENQNVGNARVISSALVPEIPISPRTALNIGIGALVGVVLGV 463 Query: 312 GIVLGRNAL 320 G L L Sbjct: 464 GTALLLETL 472 >UniRef50_B2IJA7 Capsular exopolysaccharide family n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IJA7_BEII9 Length = 739 Score = 66.1 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 62/209 (29%), Gaps = 11/209 (5%) Query: 114 EEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIAL 173 E + KL +S ++ AQY+ + A+ Sbjct: 273 EAKAKLDALQDWNGNVTNSKIS-DALKSDVISRLRAQYLDFSAKESEWANRYGADHLAAV 331 Query: 174 GRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLG 233 ++ + + + + + + A + + K Q E + L Sbjct: 332 RLRDQMHEISKS-ISLELNRITETYKSDYKIASAREGAIEKSLNQLALEAAGTTSKAQLQ 390 Query: 234 SEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSP 293 LES + T F +E+ + + R + K P R+ SP Sbjct: 391 LRVLESTAQTYRTLHDNFL---------QRSMEATQQQTFPVSEARIITKADTPERKSSP 441 Query: 294 KKAITLILAVLLGGMVGAGIVLGRNALRN 322 K + L A +G +G V R L N Sbjct: 442 KTLLILSGATFIGCFLGVFAVFVRERLDN 470 Score = 48.4 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 79/256 (30%), Gaps = 15/256 (5%) Query: 24 LVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQ 83 + R I + I + Y+ +A K+T++ + +I Sbjct: 30 WSTIQRQWRLIATIMCTLIIFSTLYIIIAPAKYTASTTVLIGGSKN--QVFEKTQIIADA 87 Query: 84 AAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEG 143 + + + + S + L + E E + + S+ + Sbjct: 88 PPDTSTIDSQVEVIKSESVILPVVRKLKLINDSEFSGSERGILQNCIAYITSFFSKPRLT 147 Query: 144 AQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEA 203 ++ K+ I Q L N+ + R L D + K +I Sbjct: 148 SETKIDYKITQA-----------LLRNLIVKRVGLTDVIEITYTSLDPDKSAQIANAIAD 196 Query: 204 LQYANQAQVTKPQIQQTGEDITQD--TLFLLGSEALESMIKHEATRPLVFSPNYYQTRQN 261 + ++TGE + L + + A E++ K + LV + ++Q Sbjct: 197 SYIISDLDAKFEATRRTGEWLQDRIKELRMQSAAADEAVRKFKEENNLVDTSRGLISQQQ 256 Query: 262 LLDIESLKVDDLDIHA 277 L D+ + + + A Sbjct: 257 LTDLNTQLIAARTLTA 272 >UniRef50_B3EME9 Capsular exopolysaccharide family n=3 Tax=Chlorobiaceae RepID=B3EME9_CHLPB Length = 803 Score = 65.7 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 37/316 (11%), Positives = 96/316 (30%), Gaps = 58/316 (18%) Query: 7 NVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPD 66 + N ++I++ +LL LW+ ++ I V + L + Y A ++ ST+++ Sbjct: 2 PNNDPNQFEQEINIQELLQVLWQNRLIIGAVTGVVLVLVMLYHFSATPEYRSTSVVLI-- 59 Query: 67 VGQIAGYNNAMNVIYGQAAPKVSD--------------LQETLIGRFSSAFSALAE---- 108 G + +N ++ + ++E + + E Sbjct: 60 KSDKGGMSEMINPFESMTGFELQNDIELVKSFPLAEEVVRELYARKDRDSLQLFGERRYI 119 Query: 109 ------------------------TLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGA 144 + + I S L VS + A Sbjct: 120 SPIGHLFSWMRFGTREKEEKEYDIRMREYATALQKRISVSNSRDTDILQVSVSSPFPDEA 179 Query: 145 QMKLA----QYIQQVDDKVNQE---LEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRI 197 + Y+++ + + +++ + D +A +K + + ++Q + Sbjct: 180 ALLTNAICRSYMRKDIEWNADQAMSVKEFVSDQLASQQKEIGEVENQLSSYMKKQNIYEL 239 Query: 198 R-QIQEALQYANQAQVTKPQIQQTGEDITQDTLFLL-----GSEALESMIKHEAT-RPLV 250 ++ L+ +A+ Q + +L+ +AL + I + Sbjct: 240 TGNAEKLLEKLVEAESRYNDAQAECNILKNRQDYLINKLSAEEKALSAKIAKNVDQQSRE 299 Query: 251 FSPNYYQTRQNLLDIE 266 Q + L+ + Sbjct: 300 LKERIKQEEKQLIAMA 315 Score = 40.3 bits (92), Expect = 0.100, Method: Composition-based stats. Identities = 26/205 (12%), Positives = 64/205 (31%), Gaps = 18/205 (8%) Query: 90 DLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKL- 148 + Q+ LI + S+ AL+ + +++ ++ +K ++ L + A Sbjct: 269 NRQDYLINKLSAEEKALSAKIAKNVDQQSRELKERIKQEEKQLIAMAGEAGTQDAGYLAK 328 Query: 149 AQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYAN 208 Q + ++ + + +A K Q Q D+R+ +++ A Sbjct: 329 KQQLDMFKQRLQELTSNTIAGELAFASKARQYQFDLISEQL--QTDVRLAELKY---IAQ 383 Query: 209 QAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESL 268 + Q +K + + L L+ + ++R + Sbjct: 384 EFQRSK---NYYESQLNRLPQKQLNYARLQRDREVLNNTYTFLKEKLEESRIKI------ 434 Query: 269 KVDDLDIHAYRYVMKPMLPIRRDSP 293 ++ V PI +P Sbjct: 435 ---ASEVGKVVIVGAAFPPIEPVAP 456 >UniRef50_B8CL31 Chain length regulator (Capsular polysaccharide biosynthesis) n=53 Tax=Gammaproteobacteria RepID=B8CL31_SHEPW Length = 736 Score = 65.7 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 70/214 (32%), Gaps = 12/214 (5%) Query: 117 EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQ--ELEKDLKDNIALG 174 EK IE + N + V + + AQ L + + + E L Sbjct: 252 EKQLIEEILNNVSENYFLQNVARDSAEAQKSLNFLQSHLPSIKTELTDYEDTLNRYRQDN 311 Query: 175 RKNLQDSLRTQEVVAQEQKDLRIRQI-----QEALQYANQAQVTKPQIQQTGEDITQDTL 229 + + + ++ ++ + + ++ K + + + + Sbjct: 312 DSIDLGLEAQSTLKVMVELEAQLNELTFKESEISQRFTKDHPAYKSLLDKRQVLLAEKER 371 Query: 230 FLLGSEAL---ESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPML 286 + L + + V Y Q + ++ LK + R + K Sbjct: 372 LNRRVQQLPKTQREVLRMTRDVEVNQQIYIQLLNKVQELSILKAG--TVGNVRILDKAQS 429 Query: 287 PIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 + PKK + ++LA LLG M+ +VL + AL Sbjct: 430 YSQAIKPKKPLIVVLATLLGAMLAIAVVLVKAAL 463 Score = 62.7 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 2/115 (1%) Query: 4 ENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT 63 + Q++ IDL L L + II + + + Y +A + + A+I Sbjct: 16 NQSQPLPQSNSNGDIDLGKLFGILLDARWLIIAVTSLFTTIGVIYALLATPVYKADALIQ 75 Query: 64 QPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREK 118 +G + + + + + S E I + + L+ + Sbjct: 76 VEQKS--SGMSALVGDMGDMFSSESSATTEVEIIKSRMVLGKTVDKLNLTTLAQP 128 >UniRef50_A4VKD6 Tyrosine-protein kinase n=9 Tax=cellular organisms RepID=A4VKD6_PSEU5 Length = 736 Score = 65.4 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 73/230 (31%), Gaps = 34/230 (14%) Query: 124 SVKNQQLPLTVSYVGQTAEGAQMKLAQ----YIQQVDDKVNQEL---EKDLKDNIALGRK 176 + +S + A L + Y+ Q + + E L+ + RK Sbjct: 240 EAGKDSGIIYMSLEDPDPQLASRVLDEISRLYVSQNIQRSSAEAAQRLDFLRSQLPQVRK 299 Query: 177 NLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEA 236 L+ + K + I I+ Q+ + T + + D L+ Sbjct: 300 ELEKAEAALHDYQTSSKSVDIS-IETKGVLDQIVQLETQLSELTLKRVDYDRLYTREHPT 358 Query: 237 LE------SMIKHEATRPLVFSPNYYQTRQNLLDIES-------------LKVDDLD--- 274 + ++ + + L T+Q LL ++ + + D Sbjct: 359 YRTLMSQMNELQAQKAQLLKKVDALPMTQQELLRLKRDMEVTTQTYTLLMNQAQEQDVLR 418 Query: 275 ---IHAYRYVMKP-MLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 I R + + + P + + + LA+ +G +V A ++L R A Sbjct: 419 AGTIGNVRIIDNAYSMTEKPSKPVRPLVVALAIFVGLLVSAAVILLRQAF 468 Score = 50.3 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%) Query: 6 NNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIIT 63 S + +IDL ++ + K II + L + Y +A + +TA+I Sbjct: 5 TRSSLEYDADNRIDLAGIMRTAYDHKALIIAITGLFTVLGVLYALIATPIYQATAMIQ 62 >UniRef50_Q01X01 Lipopolysaccharide biosynthesis n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01X01_SOLUE Length = 559 Score = 65.4 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 32/299 (10%), Positives = 76/299 (25%), Gaps = 16/299 (5%) Query: 21 IDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVI 80 ++ L+R K T++ A+ A + S A I Q+ G N + Sbjct: 1 MECARTLYRRKATVLWITFFAVIAAALISVAQPRMYESQASI------QVQGVNENFLNL 54 Query: 81 YGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQT 140 + + + L+ ++ +L P + G + Sbjct: 55 RDIFPTAAPSADSAVYVQTQAEMLQQDALLERVVKKLRLEDRPEYQRSSSLWDRLRPGTS 114 Query: 141 AEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQI 200 +++ ++ ++ L L ++ + RQ Sbjct: 115 QAPVTRTAVDEVRKNLQIISSRGTSIIRIVAEAREPQLAADLANTLAQTFIEQSIEARQR 174 Query: 201 QEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEAL-ESMIKHEATRPLVFSPNYYQTR 259 +A+ + K + + + + G A + + + Sbjct: 175 SAQQTFASLSGDLKEIRNRALQTESDLNAYGRGKRAAGRAEGDGNREFYDAMARRANEAS 234 Query: 260 QNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 L R V P + L+ + G + G V+ + Sbjct: 235 V---------ASTLRQSNVRLVDPAQPATHHHKPNVPLNLLFGLFGGLALATGYVMLQE 284 >UniRef50_Q0FSG4 Exopolysaccharide polymerization/transport protein n=1 Tax=Roseovarius sp. HTCC2601 RepID=Q0FSG4_9RHOB Length = 763 Score = 65.4 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 35/266 (13%), Positives = 81/266 (30%), Gaps = 22/266 (8%) Query: 57 TSTAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEER 116 ++ + + + A ++ Q + + A+ L++Q E Sbjct: 239 QASERAVASYRRENQLMVPEGEFLPIEIALNAANEQLVELQGQAVTAKVQADQLEDQIES 298 Query: 117 EKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRK 176 ++ ++ + + AE Q + + + + + + + R Sbjct: 299 GEIEAIQLAPEERTEAVTEFEARYAELLQAEQEALLTYDESAP---VVVNTRRAMEQTRT 355 Query: 177 NLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEA 236 + R+ + ++ A Q T+ I + D + + + Sbjct: 356 LIVQEYRSILEQLRARER----------ALAGQLSATREMIGEMNADYSSVMEKTVALRS 405 Query: 237 LESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKA 296 LE + + Y T Q L D R + + P + P+ Sbjct: 406 LEREAEAKRELYERMLEQYNSTSQLLTF---------DATPARVIAWAVPPDTKSGPRSK 456 Query: 297 ITLILAVLLGGMVGAGIVLGRNALRN 322 ++LA G ++ G+VL AL N Sbjct: 457 RIVVLAAFAGLLLSIGVVLAIEALDN 482 >UniRef50_B5WFM2 Exopolysaccharide transport protein family n=1 Tax=Burkholderia sp. H160 RepID=B5WFM2_9BURK Length = 752 Score = 65.4 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 34/270 (12%), Positives = 75/270 (27%), Gaps = 52/270 (19%) Query: 91 LQETLIGRFSSAFSALAET-LDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLA 149 L ++ + F+ L+ E +K + + + G + L Sbjct: 215 LVNSISANAGTTFNLYRSPVLEAIEILQKNFVITEKGKDSGIFSAALQGDDPDVVAATLN 274 Query: 150 Q----YIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQK------------ 193 + Y+ Q ++ ++ K + ++ L+ L E + K Sbjct: 275 EIGDLYVTQSIERRARQAAKS-RASLEAELPTLRSGLEVAEARLKSLKTKNETFDLSEEV 333 Query: 194 ---DLRIRQIQEALQ----------------------YANQAQVTKPQIQQTGEDITQDT 228 +I + +L Q + K +I + Sbjct: 334 TSYLQQISDAEASLMLLRQKRADLRAHFSPAHPAVKGIEEQIVIQKNRISDVDARVKALP 393 Query: 229 LFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPI 288 + E ++ + + N Q + V+ + R + +P Sbjct: 394 RKEQETMRAEREVQVANSLYVGLINNIQQLKL---------VELDKVGRVRKLDFARVPW 444 Query: 289 RRDSPKKAITLILAVLLGGMVGAGIVLGRN 318 PKK + + L+ +LG M G R Sbjct: 445 EPAKPKKLLVIALSAILGMMSGLIYAFLRE 474 Score = 41.1 bits (94), Expect = 0.056, Method: Composition-based stats. Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 7/69 (10%) Query: 2 RVENNNVSGQNHDPEQI-------DLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKE 54 ++ +N + +L L L + I + L +GY +A Sbjct: 3 TFSKIPMNDRNLSRNEFHAKARGSELSRYLEVLLPNRWRIGGIAAAVLFLGVGYAFLASP 62 Query: 55 KWTSTAIIT 63 + + ++ Sbjct: 63 TYEADILLQ 71 >UniRef50_Q5P6W3 Putative uncharacterized protein n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5P6W3_AZOSE Length = 396 Score = 65.0 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 55/386 (14%), Positives = 120/386 (31%), Gaps = 67/386 (17%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 +++ + H+ +IDL L+ LW+ K+ I+ + ++ + +G ++ K+ + + Sbjct: 1 MQSTPNNPPAHEDNEIDLRQLVSVLWKQKLLIVGAGVLCAGVGVGASLLST-KYVAEGLF 59 Query: 63 TQPDVGQ---------------IAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALA 107 P V + Y + + + L E + A Sbjct: 60 LTPGVSATNYKRFVSVFSNGPRLQQYLQDTGALATRDGALLFGLAENQDRLVETLRPEFA 119 Query: 108 ETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGA--QMKLAQYIQQVDDKVN----- 160 T +Q+ E + + + + + G LA+Y++ +VN Sbjct: 120 FTDKDQKAFGVKVAEDDEPGAMIGVRIQFSHKEPTGGTPVTLLAEYVRDTVIRVNFEKAL 179 Query: 161 ----------------QELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQE-- 202 +L D R + + A + +I +++ Sbjct: 180 LARCADFRTREQELRNAQLSNDFAITQEERRAATLREIIARNPGAAVSDNRQIVSLEKGS 239 Query: 203 -------ALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEA-TRPLVFSPN 254 A A++ Q+ ++ + + + L ++ + T F Sbjct: 240 ERFLSPAAQLVASEIQIADMKLAEVRRERERTASALKRDYYCQAQQALQQPTTGPTFLQG 299 Query: 255 YYQTRQN------------LLDIESLKVDDLD-----IHAYRYVMKPMLPIRRD-SPKKA 296 + L V+ + + R+V P ++ P A Sbjct: 300 LPNIQAAAFQGQDKSVDIIEQTWNELDVERATWTNTYLQSMRFVASPEGTEVKERKPGLA 359 Query: 297 ITLILAVLLGGMVGAGIVLGRNALRN 322 + L+L LLGGM+G L R R Sbjct: 360 LGLVLGGLLGGMLGVFGALARAWWRG 385 >UniRef50_Q08U06 Chain length determinant protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08U06_STIAU Length = 498 Score = 65.0 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 33/284 (11%), Positives = 91/284 (32%), Gaps = 33/284 (11%) Query: 59 TAIITQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREK 118 + + + +++ ++A+ ++ ++E+ F FSA+ ER + Sbjct: 203 QSFLHAREREEVSSIDDAITILEEHERQAADAVKESY-DEFEKTFSAIM------LERRR 255 Query: 119 LTIEPSVKNQQLPLTVSYVGQTAEGAQMK----LAQYIQQVDDKVNQELEKDLKDNIALG 174 + +P + + + E AQ++ + + + +++D++A Sbjct: 256 VVGDPRLIPR-------FSSTDQELAQLRFLIRAKRRAIADAQVQHNQRLTEMQDDLAQK 308 Query: 175 RK-------NLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQD 227 R+ ++ + + Q ++ +E A A + + E + Sbjct: 309 REMYAPDHPSVVEMENRVASLRQGSPQVKALVNEEKDMLAEYADLGGKSLPFPDEPVPDP 368 Query: 228 TLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHA--------YR 279 L I + + + ++ + L+ + + Sbjct: 369 YGLERVLMGLLPAISENPSAAVSLEQLRSRLSAQQQILKRIDSAKLERNIAMRSFKYRFT 428 Query: 280 YVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 + P + P I + AV+ G ++G L R+ L Sbjct: 429 LLTPAEFPRKPIKPNAIIISLGAVVAGLVLGVFAALARDVLSGR 472 Score = 41.5 bits (95), Expect = 0.038, Method: Composition-based stats. Identities = 23/264 (8%), Positives = 70/264 (26%), Gaps = 12/264 (4%) Query: 25 VQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQA 84 + R K ++ + + L + + W + + IA N Sbjct: 33 SAVKRHKWLVLGTFLTTAFLGLAAAKLLPRTWYAETKLLPRRASTIAALVNPERANLLNP 92 Query: 85 APKVSDLQETLIG---RFSSAFSALAETLDNQEEREKL------TIEPSVKNQQLPLTVS 135 P + + ++ + L ++ L T P ++ + + + Sbjct: 93 DPPNPMRPANEVDAPTKAAAEAVLRRDNLVALVKKLNLLDRWEATRPPLLRAKDTVMRLI 152 Query: 136 YVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDL 195 E + +++ + + + + + Q+ ++ Sbjct: 153 STPPDEEARMDGMVGVLEKKLSVGTNDGKVTIGVEWGDPQLAFELVDAAQQSFLHARERE 212 Query: 196 RIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNY 255 + I +A+ + + Q ++ + + LE R + + Sbjct: 213 EVSSIDDAITILEEH---ERQAADAVKESYDEFEKTFSAIMLERRRVVGDPRLIPRFSST 269 Query: 256 YQTRQNLLDIESLKVDDLDIHAYR 279 Q L + K + + Sbjct: 270 DQELAQLRFLIRAKRRAIADAQVQ 293 >UniRef50_B9QVY7 Chain length determinant protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QVY7_9RHOB Length = 786 Score = 65.0 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 32/193 (16%), Positives = 69/193 (35%), Gaps = 12/193 (6%) Query: 137 VGQTAEGAQMKLA-QYIQQVDDKVNQELEKDLKDNIAL-----GRKNLQDSLRTQEVVAQ 190 G + E A L Q IQ++ ++ + + +I L K LQ L + + Sbjct: 278 SGGSLETATDVLNSQLIQRLRERQVEIQSNIAELSITLLPNHPQIKALQSQLSDYDRQIR 337 Query: 191 EQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLV 250 + + ++ + A+Q + + + + S A ++ + Sbjct: 338 SEALKVLEGLENDARVASQQAL------ALERRLDELKVAAAKSNADQARLSELEREADA 391 Query: 251 FSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVG 310 + Q + + ++ L R V + +P+ SPK + I+A L+ ++G Sbjct: 392 KAAQLDQLLLSFQEADTRLRSQLLPADARIVSRANVPVEPFSPKVVSSTIIAALVTFILG 451 Query: 311 AGIVLGRNALRNY 323 V+ R L Sbjct: 452 TAFVIMRELLTGR 464 >UniRef50_B2T0G2 Capsular exopolysaccharide family n=2 Tax=Burkholderia RepID=B2T0G2_BURPP Length = 784 Score = 64.6 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 31/263 (11%), Positives = 75/263 (28%), Gaps = 34/263 (12%) Query: 93 ETLIGRFSSAFSALAETLDNQEEREKLTIEPSV-KNQQLPLTVSYVGQTAEGAQMKLAQ- 150 + L+ R + F+ + + ER + ++ S + + Y E A+ Sbjct: 210 DRLVARPGTEFTLVRLSEAKAIERFQHQLKVSESGKDTGVVQIVYENTDPELARAIANGI 269 Query: 151 ---YIQQVDDKVNQELE---KDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEAL 204 YI + E + + R NL + ++ + A Sbjct: 270 AQGYIASHIAQHRAEALTTRDFIIGELPQLRANLTQAEAELSQYKTASSSMQ-AGTEAAS 328 Query: 205 QYANQAQVTKPQIQQTGEDITQDTLFLLGSEALE---SMIKHEATRPLVFSPNYYQT--- 258 + + + ++ F S ++ S + F + Q Sbjct: 329 YLQGSIEFDRQIATLKVQKAALESHFAPNSRDVQTVVSQLALLQNAKSAFEARFDQLPAS 388 Query: 259 -RQNLLDIESLKVDDL------------------DIHAYRYVMKPMLPIRRDSPKKAITL 299 R++ ++KV + + + +LP+ PK+ + + Sbjct: 389 ERRSADLTRNVKVAEDIYVAMVNKSNELAVTQAGTLGNVHIIDTALLPVDPVKPKRPLVI 448 Query: 300 ILAVLLGGMVGAGIVLGRNALRN 322 + G +V + R + Sbjct: 449 GVGAAGGLIVAFLYIFIRRLWSS 471 Score = 43.8 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 33/96 (34%), Gaps = 4/96 (4%) Query: 1 MRVENNNVSG--QNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTS 58 M + ++ + + +L Q+ + V + LA Y A +++ Sbjct: 1 MNPSVSRTPPIVLQNNADAFSVHELARQIVDNVWLVAGIVALVTGLAALYAFAATPVYSA 60 Query: 59 TAIITQ--PDVGQIAGYNNAMNVIYGQAAPKVSDLQ 92 A++ P + + A + P +++Q Sbjct: 61 DALVKVDFPKPNALGEASKAQEQVIPPTLPTEAEIQ 96 >UniRef50_A9BJS3 Capsular exopolysaccharide family n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BJS3_PETMO Length = 720 Score = 64.2 bits (154), Expect = 5e-09, Method: Composition-based stats. Identities = 37/289 (12%), Positives = 88/289 (30%), Gaps = 18/289 (6%) Query: 51 VAKEKWTSTAIIT----QPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSAL 106 +++ ++T+ + + + + + + D + I +F ++ Sbjct: 164 LSQNEYTARRMFIEEQIPLAESDLNAAQDDLRNFKEENNIFLLDEEAKSILQFLVSYDQQ 223 Query: 107 AETLDNQEEREKLTIEP---SVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQEL 163 T Q E K+ ++ ++K+ + S Q + E Sbjct: 224 INTYQIQMEETKIRLKTLNDTLKSMDQEIISSETISINPVVSNLRNQIVNIQVQLAGLEG 283 Query: 164 EKD--------LKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQ-AQVTK 214 K L++ ++ ++ L++ + T + + + + L QV + Sbjct: 284 TKSPSDPEVLRLREELSQAQEMLKNEISTIVTSQVKTANPQYSSLYSQLIEEQARQQVLQ 343 Query: 215 PQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLD 274 IQ L ALE + + V Y + L + + + Sbjct: 344 GTIQSLTTLRNTYQSQLNQLPALEQRLMNYEREVRVKENLYVLLLEKLEEAKIAEAGV-- 401 Query: 275 IHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 I + + P K +T + +LG +G +V L Sbjct: 402 IGTANIIDPAFVSPNPVKPNKTLTAAIGGVLGIFLGILVVFLIEYLDKK 450 Score = 45.7 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 35/257 (13%), Positives = 87/257 (33%), Gaps = 19/257 (7%) Query: 15 PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYN 74 ++ D+L + ++V+V + + + YL A + + + Q + + Sbjct: 2 ENELTFEDILKIFRKRFWWFFLTVVVTVVITLIYLFNATPIYEANTTLKIDPSQQSSVAD 61 Query: 75 NAMNVIYGQAAPKVSDLQETLIGR----FSSAFSALAETLDNQEEREKLTIEPSVKNQQL 130 I ++ ++++ R + + E E++T V+ + Sbjct: 62 IFGTQIGSTSSKISTEIELIKSRRNLEKVIDNLNLMEYFQAKSENPEEVTRNSVVRTLEE 121 Query: 131 PLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQ 190 +TVS V T ++ ++EL + + DN+A+ +L SL E A+ Sbjct: 122 MITVSPVSDT---------NVVRISVQSEDKELARSIADNLAIVYNDLLKSLSQNEYTAR 172 Query: 191 EQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLV 250 + E+ A Q + + + + ++ +L + Sbjct: 173 RMFIEEQIPLAESDLNAAQDDLRNFKEENNIFLLDEEAKSILQFLVSYDQ------QINT 226 Query: 251 FSPNYYQTRQNLLDIES 267 + +T+ L + Sbjct: 227 YQIQMEETKIRLKTLND 243 >UniRef50_A4AB87 Chain length determinant protein n=2 Tax=unclassified Gammaproteobacteria RepID=A4AB87_9GAMM Length = 316 Score = 64.2 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 34/316 (10%), Positives = 84/316 (26%), Gaps = 30/316 (9%) Query: 1 MRVENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTA 60 M +N V Q+ +DL+ + L R K ++I+ I +LA + + A Sbjct: 1 MTSQNTTVDLQHTAAANLDLMPFVNALLRAKWLLLIAFIAGASLAAWLSFTTPYTYVAGA 60 Query: 61 IITQPDVGQIAGYN-NAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKL 119 ++ D+ G + + + + T +S A + + Sbjct: 61 KVSIVDIEDPGGVSPDDRRASEVLTLVEHGFVMGTTRDNYSEVMMARLRSRSFTLHFLET 120 Query: 120 TIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQ 179 Y + +E Q + V + + + + Sbjct: 121 H---------NIYRHFYPAKWSEETQSWEEGFTPDVGESFT-------RFRDEIRMITVD 164 Query: 180 DSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALES 239 + V + + R + ++ L S+ +E Sbjct: 165 EETDIVTVSMRWPEPTVPRDWANLYVQTFNEYMRNRTQEEVLRKQAFLEDTLRKSDVVEI 224 Query: 240 MIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITL 299 Y + + + + + + P R + + + Sbjct: 225 Q-----------KSIYRLIEAQTAIM--MLANAREEYVLEIIDPAARPYRSVNMSRKKKV 271 Query: 300 ILAVLLGGMVGAGIVL 315 ++ ++ M+ VL Sbjct: 272 LVGGIVALMLTMFAVL 287 >UniRef50_A9EY54 Succinoglycan biosynthesis transport protein exoP n=3 Tax=Rhodobacteraceae RepID=A9EY54_9RHOB Length = 697 Score = 64.2 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 93/294 (31%), Gaps = 23/294 (7%) Query: 39 IVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQA----APKVSDLQET 94 ++ LA + + + + + + + A NA Y + V++ Sbjct: 164 VIQTLLANTRVVNIPDTYIFSIWVLSENPFKAADIANAFADTYVENQVAVKLNVTEQATG 223 Query: 95 LIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPL---TVSYVGQTAEGAQMKLAQY 151 + + + E + + + + + Q + L +S AE A Q Sbjct: 224 WLAERVTELRSQLEVNERRVADIRAQADVTSPAQLIGLENRLISLRSALAERAAEVAEQQ 283 Query: 152 IQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQ 211 Q + Q +E+ G + + + R ++EA + Sbjct: 284 ALQTELTSLQTVEEQRVAARRNGYGAILARTDNPQDGWRSVLAQLARDLREAEAKEQAIR 343 Query: 212 VTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLV--FSPNYYQTRQNLLDIESLK 269 + ++ T + +E +++ EA+R L F +T + Sbjct: 344 RSMADLEITIATQSDAL-----TEVVQAERDAEASRLLFENFQNRLRETSMQIGLQR--- 395 Query: 270 VDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 R + + P R P K LIL+V LGG +G +V+ R Sbjct: 396 ------ADSRVISRAFPPDRPALPNKGQILILSVFLGGFLGTVLVVVLQLSRAR 443 Score = 56.5 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 32/283 (11%), Positives = 78/283 (27%), Gaps = 23/283 (8%) Query: 3 VENNNVSGQNHD------PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAV-AKEK 55 + + NVS E +DL + +WRG+ I V++ + + I + A Sbjct: 1 MGSTNVSTPKTSFAADDGQEVLDLGAIFAIIWRGRWVIAACVLIGLIVGIWRAYIVATPL 60 Query: 56 WTSTA-IITQPDVGQIAGYNNAMNVIYGQAAPKVSDL----QETLIGRFSSAFSALAETL 110 + + ++ P ++ + ++ + +++ L G+ + +++ Sbjct: 61 YGAEVQLVLDPRDEKVVDIESVVSSLSATDEVIRTEVHILGGRELAGQVVDRLNLISDPE 120 Query: 111 DNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDN 170 N R+ V + + V +++ + L N Sbjct: 121 FNMMLRDPGFNPVQVLKDMIKGILGMQVYDTSLTPD---------PAFVREKVIQTLLAN 171 Query: 171 IALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLF 230 + + K I NQ V +Q + + Sbjct: 172 TRVVNIPDTYIFSIWVLSENPFKAADIANAFADTYVENQVAVKLNVTEQATGWLAERVTE 231 Query: 231 LLGSEALESMI--KHEATRPLVFSPNYYQTRQNLLDIESLKVD 271 L + A + L+ + S + Sbjct: 232 LRSQLEVNERRVADIRAQADVTSPAQLIGLENRLISLRSALAE 274 >UniRef50_A3W0H6 Chain length determinant protein, putative n=2 Tax=Roseovarius RepID=A3W0H6_9RHOB Length = 432 Score = 64.2 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 36/358 (10%), Positives = 95/358 (26%), Gaps = 56/358 (15%) Query: 19 DLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMN 78 DL+ L R I++ +V L+I + + +TA+I + Sbjct: 6 SFPDLIRLLHRKLWLIVLVAVVGAILSIIVALNQPKVFQATAVIQIETPQVGSDLAGQTI 65 Query: 79 VIYGQAAPKVSDLQETLIGRFSSAF-------SALAETLDNQEEREKLTIEP-------- 123 ++ + + +A + + + +++ Sbjct: 66 ATDANQRLQLIEQRLMARDNLVKVIERHGLFANARDMPMAEKVHQLRISARITPITVGVP 125 Query: 124 --SVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKD----------NI 171 L+V+ A +++ V + + +++ + Sbjct: 126 GMGPATTPSGLSVTVNLNDPVKAAEVANDFVETVIAENRERRMALVRETFDFFSAEETRV 185 Query: 172 ALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQ---IQQTGEDITQDT 228 + ++ + + E I ++E L+ N+ + Q +T + Sbjct: 186 SARIAEVEGVIADFKRANAESLPTSITPVREELRTLNETLLALDQQIITLETEASRQRQE 245 Query: 229 LFLLGSEALESMIKHEATRPL-----------------VFSPNYYQTRQNLL-------- 263 +F L A R + N Q + L Sbjct: 246 VFARQIGQLTEQRALVAGRIAENEAALAAAPRVERELGALTRNLTQLQDQLSTITTSRVE 305 Query: 264 -DIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNAL 320 ++ S+ + + + P S + +I + + G G + + Sbjct: 306 AEMASVLESRQQQERFEILETAIPPEFPVSASRKKLVIAGAVASLVAGIGFAVLLEIM 363 >UniRef50_Q1ING6 Protein-tyrosine kinase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ING6_ACIBL Length = 711 Score = 63.8 bits (153), Expect = 7e-09, Method: Composition-based stats. Identities = 34/268 (12%), Positives = 86/268 (32%), Gaps = 35/268 (13%) Query: 90 DLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLA 149 + L + + + + + + ++ T +T + + + Sbjct: 202 QASDWLSRQLTDLKNDVETSQQRLADYQRETGILGESETNNIVTAKLEDINKQLSAAEAN 261 Query: 150 QYIQQVDDKVNQELEKDLKDNIALGRK-----------NLQDSLRTQEVVAQEQKDLRIR 198 + +++ ++ + + +L ++A L +LR QE + Sbjct: 262 RIVKEAVWRLAKSGDPELISSMAGTSLVPGIASSSAPLGLLPTLRAQEAQLKADIAQNSE 321 Query: 199 QI-----QEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSE-------ALESMIKHEAT 246 ++ + A A + + G+ + L ++ AL + K EA Sbjct: 322 RLGPSFPKLVQMRAQLADLQSSIQSELGKISARAENDYLAAKNAEDMERALFAKQKQEAN 381 Query: 247 RPLVFSPNY--------YQTRQNLLDIESLKVDDLDI----HAYRYVMKPMLPIRRDSPK 294 + + Y + LK + V +P + SPK Sbjct: 382 QINDSAVQYGVLKREADANRDLYQTLLGKLKEAGVLAGLHSSDILVVDSARVPDKPASPK 441 Query: 295 KAITLILAVLLGGMVGAGIVLGRNALRN 322 + + L+L ++G ++G I L +++L Sbjct: 442 RLLNLVLGAVIGLILGVSIALLQDSLDR 469 >UniRef50_Q2S4Z4 Chain length determinant protein n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S4Z4_SALRD Length = 435 Score = 63.8 bits (153), Expect = 7e-09, Method: Composition-based stats. Identities = 48/381 (12%), Positives = 113/381 (29%), Gaps = 65/381 (17%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQ 64 + ++I L++L+V L RG+ I++SV+ L + Y ++T+ + + + Sbjct: 17 SRPGRRMPPPEDEITLMELIVTLSRGRGLIVLSVVGIGLLGVLYSVATPSRYTAESKVIR 76 Query: 65 PDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALA-----------ETLDNQ 113 G + + + +G +++ +A +T Sbjct: 77 EAGEGGGGPSLPSGIGGIAGGLGIDIGGGGSVGLSPASYPEIATSREVRLAVARDTFYFP 136 Query: 114 EEREKLTIEPSVKNQQLPL--TVSYVGQTA------------------------------ 141 + T V L +SY Sbjct: 137 SLGRRTTFVDYVNRPPGTLDQILSYTVYLPWTVKGALGSLIGSGQGKRSAGTDSTGTLIY 196 Query: 142 --EGAQMKLAQYIQQVDDKVNQELEKD----------------LKDNIALGRKNLQDSLR 183 E + ++ + V V++ + L + + Sbjct: 197 PTEEEEKAISALGEMVSASVSESGALEGGSGLMTVSASSGNPGLSARLNERFIEHLRTRV 256 Query: 184 TQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKH 243 + + +++LR + + +Q + GS+ + Sbjct: 257 RELQTEKTRRNLRFVEKRFGEVKQELDAAENRLVQFLERNKGV---LAAGSKPQLESRRE 313 Query: 244 EATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAV 303 R + F Y Q + L++ + KP P +P + + ++L++ Sbjct: 314 RLRREVGFKEQLYSQMQKQVTQTRLQLQK-EQPVVTVAEKPAPPAEPSAPNRTLNVVLSL 372 Query: 304 LLGGMVGAGIVLGRNALRNYN 324 LGG+ G G R+A+++ Sbjct: 373 FLGGLFGVGATFFRSAIQSQE 393 >UniRef50_Q0AW94 Capsular polysaccharide biosynthesis protein-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AW94_SYNWW Length = 435 Score = 63.8 bits (153), Expect = 7e-09, Method: Composition-based stats. Identities = 32/284 (11%), Positives = 96/284 (33%), Gaps = 8/284 (2%) Query: 5 NNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAV-AKEKWTSTAIIT 63 N +D E+IDL D+ + + K TII ++ + L+ + + ++ +++ Sbjct: 2 QGNDPSYYNDYEEIDLRDIFKTINKWKHTIIAVTLICVLLSGIFSFFVLDPVYEASTVVS 61 Query: 64 QPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLI----GRFSSAFSALAETLDNQEERE-- 117 ++ ++ + + + A+ + L R Sbjct: 62 IYQAQLNREKESSNDITDTVNELGEIPYMSAVSCEQQVKSPAIIEAVIKKLQLPYTRNGL 121 Query: 118 KLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKN 177 K +I+ + ++ E A ++ +N+ ++ + ++ + K Sbjct: 122 KSSIKTQQVQNTNLIIITVSNNDPELAAKIANTLREEFILHINKINKRKMAQSLEIMEKE 181 Query: 178 -LQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEA 236 LQ +VV+++ K+ +++ + + + I + E Sbjct: 182 WLQKEEVELDVVSEKLKEHKLQSRSIEFLNSQLGKKREDLINYQSWLAKAEIDRASQQEG 241 Query: 237 LESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIHAYRY 280 ++ + + A P + D++ + + D + + + Sbjct: 242 IKQLQETIAHTPHTLTTVNTANGILPADLQGIDIKDGTVSSEQI 285 Score = 56.1 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/237 (9%), Positives = 65/237 (27%) Query: 87 KVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQM 146 + +++ ++ + +++ + E + Q + + Sbjct: 184 QKEEVELDVVSEKLKEHKLQSRSIEFLNSQLGKKREDLINYQSWLAKAEIDRASQQEGIK 243 Query: 147 KLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQY 206 +L + I + + L +++D + E + L + Sbjct: 244 QLQETIAHTPHTLTTVNTANGILPADLQGIDIKDGTVSSEQINMNYTSLIEAYNSKTTAL 303 Query: 207 ANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIE 266 A Q+ + + K + +++ Sbjct: 304 AELTVQINKTRQEIARQEKEILDLEAELIINQLGEKKLQNEVSRRESVVDLLSSKIAELK 363 Query: 267 SLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 + +L + V + M+P P K + + +A +LG M+ + LR Sbjct: 364 MTESINLADNNIITVSEAMVPEAPVKPNKMLNIAIAAVLGLMLATFGIFLIEYLREN 420 >UniRef50_C0BRP2 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BRP2_9BIFI Length = 506 Score = 63.8 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 50/166 (30%), Gaps = 2/166 (1%) Query: 3 VENNNVSGQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAII 62 V + + + I L+DL + + + II+ +V A Y +A K+++TA + Sbjct: 16 TNQVVVESNDTEDDGITLMDLFRIVHKHLLVGIITFVVVFAAVCAYTFLAPPKYSATAQV 75 Query: 63 TQPDVGQIAGYNNAMNVIYGQ--AAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLT 120 NN N+ ++ LD Sbjct: 76 FATYSDSSVQDNNISNINSASTYITNQIQSYPTLATTESVLKPVIDDLGLDTTVANLAGQ 135 Query: 121 IEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKD 166 + + + ++ A+ A + + + V + L Sbjct: 136 LTVTNPTNTAFVNITAETGDAKQASDIANSVAESLSNVVEKSLYAS 181 Score = 53.0 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 59/170 (34%), Gaps = 14/170 (8%) Query: 156 DDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLR--IRQIQEALQYANQAQVT 213 + ++ + NI + + +++ +A + L+ I + AN A Sbjct: 77 ATYSDSSVQDNNISNINSASTYITNQIQSYPTLATTESVLKPVIDDLGLDTTVANLAG-- 134 Query: 214 KPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDL 273 Q T + T + +E ++ + + + + S K + Sbjct: 135 ----QLTVTNPTNTAFVNITAETGDAKQASDIANSVA--ESLSNVVEK-SLYASGKESPV 187 Query: 274 DIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNY 323 + V + PI SPK A+ L + ++ G ++G L R+ + Sbjct: 188 KLS---VVQRAAEPISPSSPKVALYLAVGLVAGLILGVFATLIRDLMATR 234 >UniRef50_A1AT07 Lipopolysaccharide biosynthesis n=3 Tax=Desulfuromonadales RepID=A1AT07_PELPD Length = 487 Score = 63.8 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 26/209 (12%), Positives = 71/209 (33%), Gaps = 2/209 (0%) Query: 111 DNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDN 170 +E+ ++ P+ + ++ Q + + + N L + + Sbjct: 251 SQKEQLSRIAASPARYTSTERDRIIVEAKSKLLTLQLSEQELLKKYTE-NNRLVVNARRE 309 Query: 171 IALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLF 230 I + + L++ A+ + E ++ + K + Q + + + Sbjct: 310 IQMVKDFLREQESDINTKAKTGNQVYQSTEIELVRAETELNAQKGKAQVLNQQLAELDRE 369 Query: 231 LLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIE-SLKVDDLDIHAYRYVMKPMLPIR 289 + + E ++ + NY + + ++ ++ L + + M+P Sbjct: 370 IRSLDYSEKNMQQLKRDMQLNEKNYQTYLEKAEEARITVDMNRLKLANISVIQSAMVPAE 429 Query: 290 RDSPKKAITLILAVLLGGMVGAGIVLGRN 318 PKK + +IL ++ G M G G+ Sbjct: 430 PIKPKKLLNIILGIVAGVMSGLGLAFLAE 458 Score = 51.9 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 32/280 (11%), Positives = 74/280 (26%), Gaps = 30/280 (10%) Query: 20 LIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNV 79 L + L +++ K I+ + I A + + + + + + + Sbjct: 15 LREFLTIVFKRKKLILGVFLAVIVTATATSFLLTPVFEAKSSLLVKLGREYLNRPEVGSN 74 Query: 80 IYGQAAPKVSDLQETL---------------------IGRFSSAFSALAETLDNQEEREK 118 + + + ++ SA + LD ER + Sbjct: 75 APVMSLNQEEVTNSEIQILKNRDLIEKVISTLKLENVYPELLNSSSARVKPLDVAIERFE 134 Query: 119 LTIEPSVKNQQLPLTVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNL 178 + + + VS+ + + A + ++ +K Q + Sbjct: 135 KDLTVEGMRKSNVIQVSFQHRDPQTAARAVNLLVELFKEKHLQVFSDPKSSFLETQLLAY 194 Query: 179 QDSLRTQEVVAQEQK---------DLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTL 229 LR E Q K + R + + + T+ I + + I Sbjct: 195 DQKLRESESKLQNFKQKAGVFSLEEQRTLLLTQRNALDTALKSTRHIISEQHKRIASQKE 254 Query: 230 FLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLK 269 L A + ++ L + E LK Sbjct: 255 QLSRIAASPARYTSTERDRIIVEAKSKLLTLQLSEQELLK 294 >UniRef50_Q0AAI3 Putative uncharacterized protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0AAI3_ALHEH Length = 721 Score = 63.8 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 38/303 (12%), Positives = 99/303 (32%), Gaps = 33/303 (10%) Query: 3 VENNNVSGQNHD-PEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAI 61 + + D ++I++ L+ L GK I + +AL Y + ++ + Sbjct: 1 MSQYEHRPTSSDRDDEIEIGRLVEILLNGKWIIAGLSALGLALGGFYAYTSTPVYSGDML 60 Query: 62 I-------TQPDVGQIAGYNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQE 114 + T P + ++ G + + + +++ + A A D +E Sbjct: 61 LQVESKQATLPGLSEMLGGEQQVPTSAEVELLRSRMVVGSVVDQLDLAVQARPLPTDWRE 120 Query: 115 ------------EREKLTIEPSVKNQQLPLTVSYVGQTA----EGAQMKLAQYIQQVDDK 158 E + + P+++ Q + V GQ A +G + + Sbjct: 121 AVLGVSNPRRHIEVGRFEVSPALEGQTFIVRVLGEGQFALLEDDGGAELARGRVDETLVL 180 Query: 159 VNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYAN--QAQVTKPQ 216 N + ++ L L + ++ + I+ ++ L + ++ + + Sbjct: 181 DNPDG-----SSLQLFVHVLTGEPGDTFELVRQPRLRAIQNLRNGLNVSQRGESGILEVT 235 Query: 217 IQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDIESLKVDDLDIH 276 + + ++ L LG + ++ + L D L+ + + Sbjct: 236 YEHPDRQLIEEVLNTLGMVYVRQNVERRTEEAARSLEFLEEQLPQLQD--RLQQAEDAFN 293 Query: 277 AYR 279 A+R Sbjct: 294 AFR 296 >UniRef50_A3K8W6 Chain length determinant protein, putative n=3 Tax=Rhodobacteraceae RepID=A3K8W6_9RHOB Length = 442 Score = 63.4 bits (152), Expect = 9e-09, Method: Composition-based stats. Identities = 39/361 (10%), Positives = 100/361 (27%), Gaps = 60/361 (16%) Query: 19 DLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMN 78 + ++ L R I+ +V +++ Y + ++ + +TA++ D + Sbjct: 6 SVGEVFAALRRRAWVILGIFLVGCVISVDYALMQQKVYEATAVVQIEDAR-VTSTATGTA 64 Query: 79 VIYGQAAPKVSDLQETLIGR-----------FSSAFSALAETLDNQEEREKLTIEP---- 123 +A+ ++ +++ L+ R + AL + R+ I P Sbjct: 65 ADANEASRRLQLIEQRLMSRDNLVSLMDKYDLFAEDPALNDGERIYMMRQAARITPITRP 124 Query: 124 -----SVKNQQLPLTVSYVGQTAEGAQMKLAQY----IQQVDDKVNQELEKDL------K 168 + L +S + E A + I + D+ ++ + L + Sbjct: 125 GPTFSAAAQAPSGLMISVMLPDPEKAAVVANDLMTKVIAESRDRSAEQASETLAFYQTEE 184 Query: 169 DNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQYANQAQV---TKPQIQQTGEDIT 225 + L+D + + Q + ++ L + ++ + Q Sbjct: 185 ARVDAEIVALEDRIADYKKANSAQLPAGVAALRTELTTLRETELDLSQEIITIQGDTARK 244 Query: 226 QDTLFLLGSEALESMIKHEATRPLVFSPNYYQ-----------------TRQNLLDIESL 268 + LE A R + I Sbjct: 245 RPEDLARQVAQLEDQRALVAARATEIEGQIASAPEVERQLGQLEREMDRLKDQYSVITRG 304 Query: 269 KVDDLDIHA---------YRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNA 319 K + A Y + ++P + + + + + G + L Sbjct: 305 KAEAEMGQALQDRQAAGRYEVLETALVPDDPVTSSRKKIAGMGAVASLIAGLIVALVFEI 364 Query: 320 L 320 + Sbjct: 365 M 365 >UniRef50_Q2C5X1 Chain length regulator (Capsular polysaccharide biosynthesis) n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C5X1_9GAMM Length = 718 Score = 63.4 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 29/246 (11%), Positives = 70/246 (28%), Gaps = 6/246 (2%) Query: 73 YNNAMNVIYGQAAPKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPL 132 YN ++ + + L E + N +LT + Sbjct: 211 YNTISSLRSRLSIMEPGKDTGILYLSLKGNNPLRMEAILNDIVNNELTQNIDHNALEAAK 270 Query: 133 TVSYVGQTAEGAQMKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQ 192 ++ ++ + +L +++ D+ L + Sbjct: 271 SLVFIENQLPEVKRELDIAENKLNTFKVSSDSVDMDYQAKSTLNILASVESKLIDL--GF 328 Query: 193 KDLRIRQIQEALQYANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFS 252 K+ + ++ A A + + + + ++ + + I + Sbjct: 329 KESELSKLYTKEHPAYVALLQQKRSLLKRKVELENEVSTMPKT--NQRIITLNRDVMAAQ 386 Query: 253 PNYYQTRQNLLDIESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAG 312 Y + + + + R + PKKA+ ++LA L GGM+ Sbjct: 387 HIYMSLINKVQQLRI--SQASTVGSVRLIDSAEASPIPIKPKKALIVVLATLFGGMLSIV 444 Query: 313 IVLGRN 318 IVL + Sbjct: 445 IVLLKK 450 Score = 47.3 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 12/91 (13%), Positives = 27/91 (29%) Query: 10 GQNHDPEQIDLIDLLVQLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQ 69 N + + I+L+DL L I+ + L + Y+ + + + Q Sbjct: 4 NSNLNLDDINLMDLFKSLLESWKLILSITCFFMILGVLYVKSTPLTYQAETRLQVETQHQ 63 Query: 70 IAGYNNAMNVIYGQAAPKVSDLQETLIGRFS 100 ++ + E + R Sbjct: 64 HLDFHVNDISNLFISQSTAKTEIEIIKSRMV 94 >UniRef50_D0IV48 Lipopolysaccharide biosynthesis n=2 Tax=Comamonas testosteroni RepID=D0IV48_COMTE Length = 284 Score = 63.4 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 41/299 (13%), Positives = 79/299 (26%), Gaps = 52/299 (17%) Query: 26 QLWRGKMTIIISVIVAIALAIGYLAVAKEKWTSTAIITQPDVGQIAGYNNAMNVIYGQAA 85 L +I ++A A G + + S+A + G A ++ Sbjct: 19 TLAENWKILIFGPLLAGIAAYGIGLAIPKTYESSASVQVERPGSSFTAPMAASLAMSADV 78 Query: 86 PKVSDLQETLIGRFSSAFSALAETLDNQEEREKLTIEPSVKNQQLPLTVSYVGQTAEGAQ 145 L + ++ I +V Q L ++ ++ E AQ Sbjct: 79 LHQIAPVAGLDDGLTKEEI---------YKKLSKRITVNVGKQDKLLNIATQAKSPEAAQ 129 Query: 146 MKLAQYIQQVDDKVNQELEKDLKDNIALGRKNLQDSLRTQEVVAQEQKDLRIRQIQEALQ 205 + + + L E + + D + Sbjct: 130 KLNQALLDTLFPLSKPRGLEK-----KQLEVQLASEKTRLEESLKLEHDT-------SAN 177 Query: 206 YANQAQVTKPQIQQTGEDITQDTLFLLGSEALESMIKHEATRPLVFSPNYYQTRQNLLDI 265 ++ VT+ + GE +T ++ G +E ++ Sbjct: 178 LSSGKSVTEATSRLYGELLTANSNRQKGILDMERRLEGLDNDD----------------- 220 Query: 266 ESLKVDDLDIHAYRYVMKPMLPIRRDSPKKAITLILAVLLGGMVGAGIVLGRNALRNYN 324 + P LP PKK++ I A + G + V R ALR Sbjct: 221 --------------VIQMPTLPELSIKPKKSMLAIGAAVGTGFLLLLFVFIRQALRTAK 265 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.306 0.111 0.240 Lambda K H 0.267 0.0339 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,240,929,283 Number of Sequences: 3077464 Number of extensions: 42165908 Number of successful extensions: 258648 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1044 Number of HSP's successfully gapped in prelim test: 1236 Number of HSP's that attempted gapping in prelim test: 255020 Number of HSP's gapped (non-prelim): 4034 length of query: 326 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 197 effective length of database: 643,403,500 effective search space: 126750489500 effective search space used: 126750489500 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 92 (40.3 bits)