BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (86 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B5EWR4 Anti-adapter protein iraP n=39 Tax=Enterobacteri... 144 1e-33 UniRef50_D2TKW6 Putative uncharacterized protein n=2 Tax=Enterob... 142 5e-33 UniRef50_A8AK82 Anti-adapter protein iraP n=63 Tax=Enterobacteri... 139 3e-32 UniRef50_C1M7J8 Predicted protein n=1 Tax=Citrobacter sp. 30_2 R... 75 7e-13 UniRef50_UPI00019F15AA hypothetical protein CATC2_11565 n=1 Tax=... 71 1e-11 UniRef50_D0KM19 Sigma-S stabilisation anti-adaptor protein n=5 T... 42 0.005 >UniRef50_B5EWR4 Anti-adapter protein iraP n=39 Tax=Enterobacteriaceae RepID=IRAP_SALA4 Length = 86 Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/86 (84%), Positives = 77/86 (89%) Query: 1 MKNLIAELLFKLAQKEEESKELCAQVEALEIIVTAMLRNMAQNDQQRLIDQVEGALYEVK 60 MKNLIAELL KLAQKEEESKEL AQVEALEIIVTAMLRNMAQN+Q+ LI QVEGAL VK Sbjct: 1 MKNLIAELLLKLAQKEEESKELVAQVEALEIIVTAMLRNMAQNEQEMLIRQVEGALEGVK 60 Query: 61 PDASIPDDDTELLRDYVKKLLKHPRQ 86 PDAS+PD DTELLR YVKKLL+HPR Sbjct: 61 PDASVPDHDTELLRQYVKKLLRHPRH 86 >UniRef50_D2TKW6 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=D2TKW6_CITRO Length = 105 Score = 142 bits (357), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 74/85 (87%), Positives = 76/85 (89%) Query: 1 MKNLIAELLFKLAQKEEESKELCAQVEALEIIVTAMLRNMAQNDQQRLIDQVEGALYEVK 60 MKNLIAELL KLAQKEEESKEL AQVEALEIIVTAMLRNMAQN+Q LI QVEGAL VK Sbjct: 20 MKNLIAELLLKLAQKEEESKELVAQVEALEIIVTAMLRNMAQNEQDTLIQQVEGALDGVK 79 Query: 61 PDASIPDDDTELLRDYVKKLLKHPR 85 PDASIPDDD ELLR YV+KLLKHPR Sbjct: 80 PDASIPDDDRELLRQYVQKLLKHPR 104 >UniRef50_A8AK82 Anti-adapter protein iraP n=63 Tax=Enterobacteriaceae RepID=IRAP_CITK8 Length = 86 Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 71/85 (83%), Positives = 77/85 (90%) Query: 1 MKNLIAELLFKLAQKEEESKELCAQVEALEIIVTAMLRNMAQNDQQRLIDQVEGALYEVK 60 MKNLI+ELL +LAQKEEESKEL AQVEALEIIVTAMLRNMAQN+QQ+LI QVE AL VK Sbjct: 1 MKNLISELLLRLAQKEEESKELVAQVEALEIIVTAMLRNMAQNEQQKLIHQVEDALDGVK 60 Query: 61 PDASIPDDDTELLRDYVKKLLKHPR 85 PDAS+PD DTELLR YVKKLL+HPR Sbjct: 61 PDASVPDYDTELLRQYVKKLLRHPR 85 >UniRef50_C1M7J8 Predicted protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1M7J8_9ENTR Length = 80 Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 38/56 (67%), Positives = 45/56 (80%) Query: 1 MKNLIAELLFKLAQKEEESKELCAQVEALEIIVTAMLRNMAQNDQQRLIDQVEGAL 56 MKNL+ ELL KLAQKEEES++L AQVE LE ++ MLRNMA ND+Q I Q+EGAL Sbjct: 1 MKNLVTELLLKLAQKEEESQDLAAQVETLERVIIEMLRNMAWNDRQIFIRQIEGAL 56 >UniRef50_UPI00019F15AA hypothetical protein CATC2_11565 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI00019F15AA Length = 81 Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 37/59 (62%), Positives = 46/59 (77%) Query: 1 MKNLIAELLFKLAQKEEESKELCAQVEALEIIVTAMLRNMAQNDQQRLIDQVEGALYEV 59 MKNL+ ELL KLAQKEEES+EL AQVE LE ++T MLRNMA +++Q + Q+E AL V Sbjct: 1 MKNLVTELLLKLAQKEEESQELAAQVETLEQVITEMLRNMAWHERQIQLRQIEAALAGV 59 >UniRef50_D0KM19 Sigma-S stabilisation anti-adaptor protein n=5 Tax=Pectobacterium RepID=D0KM19_PECWW Length = 88 Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 43/73 (58%), Gaps = 4/73 (5%) Query: 1 MKNLIAELLFKLAQKEEESKELCAQVEALEIIVTAMLRNMAQNDQQRLIDQVEGALYEVK 60 M N+++ LL KLA+KE K L A++E+LE++++A++ + N L ++EG V Sbjct: 1 MNNILSHLLIKLAEKEVGEKALNAKIESLEMLISAIVSTLDDNKINELNKRIEG----VV 56 Query: 61 PDASIPDDDTELL 73 DAS D+ L Sbjct: 57 ADASQRKDECNCL 69 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2TKW6 Putative uncharacterized protein n=2 Tax=Enterob... 122 4e-27 UniRef50_B5EWR4 Anti-adapter protein iraP n=39 Tax=Enterobacteri... 113 2e-24 UniRef50_A8AK82 Anti-adapter protein iraP n=63 Tax=Enterobacteri... 112 6e-24 UniRef50_C1M7J8 Predicted protein n=1 Tax=Citrobacter sp. 30_2 R... 85 4e-16 UniRef50_UPI00019F15AA hypothetical protein CATC2_11565 n=1 Tax=... 76 4e-13 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_D2TKW6 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=D2TKW6_CITRO Length = 105 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 74/86 (86%), Positives = 76/86 (88%) Query: 1 MKNLIAELLFKLAQKEEESKELCAQVEALEIIVTAMLRNMAQNDQQRLIDQVEGALYEVK 60 MKNLIAELL KLAQKEEESKEL AQVEALEIIVTAMLRNMAQN+Q LI QVEGAL VK Sbjct: 20 MKNLIAELLLKLAQKEEESKELVAQVEALEIIVTAMLRNMAQNEQDTLIQQVEGALDGVK 79 Query: 61 PDASIPDDDTELLRDYVKKLLKHPRQ 86 PDASIPDDD ELLR YV+KLLKHPR Sbjct: 80 PDASIPDDDRELLRQYVQKLLKHPRY 105 >UniRef50_B5EWR4 Anti-adapter protein iraP n=39 Tax=Enterobacteriaceae RepID=IRAP_SALA4 Length = 86 Score = 113 bits (282), Expect = 2e-24, Method: Composition-based stats. Identities = 73/86 (84%), Positives = 77/86 (89%) Query: 1 MKNLIAELLFKLAQKEEESKELCAQVEALEIIVTAMLRNMAQNDQQRLIDQVEGALYEVK 60 MKNLIAELL KLAQKEEESKEL AQVEALEIIVTAMLRNMAQN+Q+ LI QVEGAL VK Sbjct: 1 MKNLIAELLLKLAQKEEESKELVAQVEALEIIVTAMLRNMAQNEQEMLIRQVEGALEGVK 60 Query: 61 PDASIPDDDTELLRDYVKKLLKHPRQ 86 PDAS+PD DTELLR YVKKLL+HPR Sbjct: 61 PDASVPDHDTELLRQYVKKLLRHPRH 86 >UniRef50_A8AK82 Anti-adapter protein iraP n=63 Tax=Enterobacteriaceae RepID=IRAP_CITK8 Length = 86 Score = 112 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 71/85 (83%), Positives = 77/85 (90%) Query: 1 MKNLIAELLFKLAQKEEESKELCAQVEALEIIVTAMLRNMAQNDQQRLIDQVEGALYEVK 60 MKNLI+ELL +LAQKEEESKEL AQVEALEIIVTAMLRNMAQN+QQ+LI QVE AL VK Sbjct: 1 MKNLISELLLRLAQKEEESKELVAQVEALEIIVTAMLRNMAQNEQQKLIHQVEDALDGVK 60 Query: 61 PDASIPDDDTELLRDYVKKLLKHPR 85 PDAS+PD DTELLR YVKKLL+HPR Sbjct: 61 PDASVPDYDTELLRQYVKKLLRHPR 85 >UniRef50_C1M7J8 Predicted protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1M7J8_9ENTR Length = 80 Score = 85.4 bits (210), Expect = 4e-16, Method: Composition-based stats. Identities = 38/58 (65%), Positives = 45/58 (77%) Query: 1 MKNLIAELLFKLAQKEEESKELCAQVEALEIIVTAMLRNMAQNDQQRLIDQVEGALYE 58 MKNL+ ELL KLAQKEEES++L AQVE LE ++ MLRNMA ND+Q I Q+EGAL Sbjct: 1 MKNLVTELLLKLAQKEEESQDLAAQVETLERVIIEMLRNMAWNDRQIFIRQIEGALAG 58 >UniRef50_UPI00019F15AA hypothetical protein CATC2_11565 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI00019F15AA Length = 81 Score = 75.8 bits (185), Expect = 4e-13, Method: Composition-based stats. Identities = 37/59 (62%), Positives = 46/59 (77%) Query: 1 MKNLIAELLFKLAQKEEESKELCAQVEALEIIVTAMLRNMAQNDQQRLIDQVEGALYEV 59 MKNL+ ELL KLAQKEEES+EL AQVE LE ++T MLRNMA +++Q + Q+E AL V Sbjct: 1 MKNLVTELLLKLAQKEEESQELAAQVETLEQVITEMLRNMAWHERQIQLRQIEAALAGV 59 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.316 0.140 0.374 Lambda K H 0.267 0.0397 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 300,378,804 Number of Sequences: 3077464 Number of extensions: 8836552 Number of successful extensions: 45895 Number of sequences better than 1.0e-01: 9 Number of HSP's better than 0.1 without gapping: 15 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 45880 Number of HSP's gapped (non-prelim): 17 length of query: 86 length of database: 1,040,396,356 effective HSP length: 56 effective length of query: 30 effective length of database: 868,058,372 effective search space: 26041751160 effective search space used: 26041751160 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 87 (38.2 bits)