Phyre 2 Results for P75858

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Email | l.a.kelley@imperial.ac.uk
Description | P75858
Date | Thu Jan 5 12:15:07 GMT 2012
Unique Job ID | 34abc373566f6b8e

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c1klfP_
Top template information
PDB header:chaperone/adhesin complex Chain: P: PDB Molecule:fimh protein; PDBTitle: fimh adhesin-fimc chaperone complex with d-mannose
Confidence and coverage
Confidence: | 99.9% | Coverage: | 77%
275 residues ( 77% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | Q | I | I | F | G | E | K | C | V | S | L | L | R | L | F | F | A | A | V | L | M | L | W | C | A | Q | T | A | A | Y | S | G | Q | C | H | T | T | Q | G | N | P | Y | I | G | V | N | F | G | V | K | T | L | E | E | E | A | N | T | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  | ? |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | G | V | V | K | D | K | F | Y | Q | W | N | E | S | N | D | Y | Y | V | S | C | D | C | D | K | D | N | V | R | S | G | R | W | A | F | A | A | D | S | P | L | V | Y | L | G | D | N | W | Y | K | I | N | D | Y | L | A | A | K | V | L | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | Q | V | K | G | S | S | P | T | A | V | P | F | E | N | V | G | T | G | G | D | T | R | W | H | I | C | D | P | G | G | Q | R | L | G | G | Q | G | A | S | G | N | S | G | S | F | S | L | K | I | L | Q | P | F | V | G | S | V | V | I | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  | ? | ? |  | ? | ? | ? | ? | ? |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | P | M | A | L | A | R | L | Y | E | C | Y | N | I | P | A | G | D | S | C | T | T | T | G | T | P | V | L | V | Y | Y | L | S | G | T | I | N | S | L | G | S | C | S | V | N | A | G | E | T | I | E | V | D | L | G | D | V | F | A | A | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? |  |  |  |  |  | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? |  |  | ? | ? |  | ? |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | F | R | V | V | G | H | K | P | L | G | A | R | T | A | E | L | A | I | P | V | R | C | N | T | G | N | A | G | L | V | N | V | N | L | S | L | T | A | T | T | D | P | S | Y | P | Q | A | I | K | T | S | R | P | G | V | G | V | V | V | T
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | .
Sequence |  | D | S | Q | N | N | I | I | S | P | A | G | G | T | L | P | L | S | I | P | D | D | A | D | S | I | A | R | M | N | V | Y | P | V | S | T | T | G | V | P | P | E | T | G | R | F | E | A | T | A | T | V | R | I | N | F | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? |  |  | ? |  |  | ? |  |  |  |  |  | ? | ? |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1klfP_ |

### PDB 1klf chain P

Region: 34 - 356
Aligned: 275
Modelled: 275
Confidence: 99.9%
Identity: 14%
PDB header:chaperone/adhesin complex
Chain: P: PDB Molecule:fimh protein;
PDBTitle: fimh adhesin-fimc chaperone complex with d-mannose

Phyre2
2 |
| c2w07B_ |

### PDB 2w07 chain B

Region: 215 - 356
Aligned: 120
Modelled: 142
Confidence: 99.9%
Identity: 17%
PDB header:cell adhesion
Chain: B: PDB Molecule:minor pilin subunit papf;
PDBTitle: structural determinants of polymerization reactivity of the2 p pilus adaptor subunit papf

Phyre2
3 |
| c3bfwA_ |

### PDB 3bfw chain A

Region: 218 - 355
Aligned: 131
Modelled: 138
Confidence: 99.8%
Identity: 14%
PDB header:structural protein/structural protein
Chain: A: PDB Molecule:protein fimg;
PDBTitle: crystal structure of truncated fimg (fimgt) in complex with the donor2 strand peptide of fimf (dsf)

Phyre2
4 |
| c3jwnK_ |

### PDB 3jwn chain K

Region: 209 - 356
Aligned: 143
Modelled: 148
Confidence: 99.8%
Identity: 19%
PDB header:protein binding/cell adhesion
Chain: K: PDB Molecule:protein fimf;
PDBTitle: complex of fimc, fimf, fimg and fimh

Phyre2
5 |
| c3jwnL_ |

### PDB 3jwn chain L

Region: 209 - 356
Aligned: 143
Modelled: 148
Confidence: 99.8%
Identity: 19%
PDB header:protein binding/cell adhesion
Chain: L: PDB Molecule:protein fimf;
PDBTitle: complex of fimc, fimf, fimg and fimh

Phyre2
6 |
| c3jwnE_ |

### PDB 3jwn chain E

Region: 209 - 356
Aligned: 143
Modelled: 148
Confidence: 99.8%
Identity: 19%
PDB header:protein binding/cell adhesion
Chain: E: PDB Molecule:protein fimf;
PDBTitle: complex of fimc, fimf, fimg and fimh

Phyre2
7 |
| c2jmrA_ |

### PDB 2jmr chain A

Region: 209 - 356
Aligned: 143
Modelled: 148
Confidence: 99.8%
Identity: 21%
PDB header:cell adhesion
Chain: A: PDB Molecule:fimf;
PDBTitle: nmr structure of the e. coli type 1 pilus subunit fimf

Phyre2
8 |
| d2j2zb1 |

### PDB 2j2z chain B domain 1

Region: 208 - 356
Aligned: 142
Modelled: 148
Confidence: 99.8%
Identity: 14%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
9 |
| c3jwnF_ |

### PDB 3jwn chain F

Region: 209 - 356
Aligned: 143
Modelled: 148
Confidence: 99.8%
Identity: 18%
PDB header:protein binding/cell adhesion
Chain: F: PDB Molecule:protein fimf;
PDBTitle: complex of fimc, fimf, fimg and fimh

Phyre2
10 |
| d1pdkb_ |

### PDB 1pdk chain B

Region: 216 - 356
Aligned: 138
Modelled: 141
Confidence: 99.8%
Identity: 17%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
11 |
| c2jtyA_ |

### PDB 2jty chain A

Region: 209 - 356
Aligned: 142
Modelled: 148
Confidence: 99.7%
Identity: 21%
PDB header:structural protein
Chain: A: PDB Molecule:type-1 fimbrial protein, a chain;
PDBTitle: self-complemented variant of fima, the main subunit of type 1 pilus

Phyre2
12 |
| d2uy6b1 |

### PDB 2uy6 chain B domain 1

Region: 209 - 356
Aligned: 142
Modelled: 148
Confidence: 99.7%
Identity: 16%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
13 |
| d1n12a_ |

### PDB 1n12 chain A

Region: 219 - 355
Aligned: 129
Modelled: 137
Confidence: 99.7%
Identity: 21%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
14 |
| d1ze3h1 |

### PDB 1ze3 chain H domain 1

Region: 220 - 356
Aligned: 119
Modelled: 123
Confidence: 99.7%
Identity: 20%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
15 |
| c3bwuF_ |

### PDB 3bwu chain F

Region: 235 - 356
Aligned: 118
Modelled: 122
Confidence: 99.6%
Identity: 18%
PDB header:chaperone, structural, membrane protein
Chain: F: PDB Molecule:protein fimf;
PDBTitle: crystal structure of the ternary complex of fimd (n-terminal domain,2 fimdn) with fimc and the n-terminally truncated pilus subunit fimf3 (fimft)

Phyre2
16 |
| d2bsca1 |

### PDB 2bsc chain A domain 1

Region: 73 - 212
Aligned: 134
Modelled: 140
Confidence: 90.9%
Identity: 13%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: F17c-type adhesin

Phyre2
17 |
| d1oioa_ |

### PDB 1oio chain A

Region: 71 - 216
Aligned: 139
Modelled: 144
Confidence: 88.2%
Identity: 10%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: F17c-type adhesin

Phyre2
18 |
| c2wmpB_ |

### PDB 2wmp chain B

Region: 220 - 355
Aligned: 117
Modelled: 136
Confidence: 72.0%
Identity: 16%
PDB header:chaperone
Chain: B: PDB Molecule:papg protein;
PDBTitle: structure of the e. coli chaperone papd in complex with the pilin2 domain of the papgii adhesin

Phyre2
19 |
| d1p5vb_ |

### PDB 1p5v chain B

Region: 257 - 356
Aligned: 91
Modelled: 100
Confidence: 48.9%
Identity: 12%
Fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
Superfamily: Bacterial adhesins
Family: Pilus subunits

Phyre2
20 |
| c2wd6B_ |

### PDB 2wd6 chain B

Region: 223 - 342
Aligned: 116
Modelled: 120
Confidence: 31.6%
Identity: 15%
PDB header:cell adhesion
Chain: B: PDB Molecule:agglutinin receptor;
PDBTitle: crystal structure of the variable domain of the2 streptococcus gordonii surface protein sspb

Phyre2
21 |
22 |
23 |
24 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1klfP_ |
|  | 99.9 | 14 | PDB header:chaperone/adhesin complex Chain: P: PDB Molecule:fimh protein; PDBTitle: fimh adhesin-fimc chaperone complex with d-mannose
2 | c2w07B_ |
|  | 99.9 | 17 | PDB header:cell adhesion Chain: B: PDB Molecule:minor pilin subunit papf; PDBTitle: structural determinants of polymerization reactivity of the2 p pilus adaptor subunit papf
3 | c3bfwA_ |
|  | 99.8 | 14 | PDB header:structural protein/structural protein Chain: A: PDB Molecule:protein fimg; PDBTitle: crystal structure of truncated fimg (fimgt) in complex with the donor2 strand peptide of fimf (dsf)
4 | c3jwnK_ |
|  | 99.8 | 19 | PDB header:protein binding/cell adhesion Chain: K: PDB Molecule:protein fimf; PDBTitle: complex of fimc, fimf, fimg and fimh
5 | c3jwnL_ |
|  | 99.8 | 19 | PDB header:protein binding/cell adhesion Chain: L: PDB Molecule:protein fimf; PDBTitle: complex of fimc, fimf, fimg and fimh
6 | c3jwnE_ |
|  | 99.8 | 19 | PDB header:protein binding/cell adhesion Chain: E: PDB Molecule:protein fimf; PDBTitle: complex of fimc, fimf, fimg and fimh
7 | c2jmrA_ |
|  | 99.8 | 21 | PDB header:cell adhesion Chain: A: PDB Molecule:fimf; PDBTitle: nmr structure of the e. coli type 1 pilus subunit fimf
8 | d2j2zb1 |
|  | 99.8 | 14 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
9 | c3jwnF_ |
|  | 99.8 | 18 | PDB header:protein binding/cell adhesion Chain: F: PDB Molecule:protein fimf; PDBTitle: complex of fimc, fimf, fimg and fimh
10 | d1pdkb_ |
|  | 99.8 | 17 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
11 | c2jtyA_ |
|  | 99.7 | 21 | PDB header:structural protein Chain: A: PDB Molecule:type-1 fimbrial protein, a chain; PDBTitle: self-complemented variant of fima, the main subunit of type 1 pilus
12 | d2uy6b1 |
|  | 99.7 | 16 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
13 | d1n12a_ |
|  | 99.7 | 21 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
14 | d1ze3h1 |
|  | 99.7 | 20 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
15 | c3bwuF_ |
|  | 99.6 | 18 | PDB header:chaperone, structural, membrane protein Chain: F: PDB Molecule:protein fimf; PDBTitle: crystal structure of the ternary complex of fimd (n-terminal domain,2 fimdn) with fimc and the n-terminally truncated pilus subunit fimf3 (fimft)
16 | d2bsca1 |
|  | 90.9 | 13 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:F17c-type adhesin
17 | d1oioa_ |
|  | 88.2 | 10 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:F17c-type adhesin
18 | c2wmpB_ |
|  | 72.0 | 16 | PDB header:chaperone Chain: B: PDB Molecule:papg protein; PDBTitle: structure of the e. coli chaperone papd in complex with the pilin2 domain of the papgii adhesin
19 | d1p5vb_ |
|  | 48.9 | 12 | Fold:Common fold of diphtheria toxin/transcription factors/cytochrome f Superfamily:Bacterial adhesins Family:Pilus subunits
20 | c2wd6B_ |
|  | 31.6 | 15 | PDB header:cell adhesion Chain: B: PDB Molecule:agglutinin receptor; PDBTitle: crystal structure of the variable domain of the2 streptococcus gordonii surface protein sspb
21 | d1jmma_ |
| not modelled | 10.9 | 10 | Fold:Supersandwich Superfamily:V-region of surface antigen I/II (SA I/II, PAC) Family:V-region of surface antigen I/II (SA I/II, PAC)
22 | c3fblA_ |
| not modelled | 9.6 | 55 | PDB header:structural protein Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of orf132 of the archaeal virus acidianus2 filamentous virus 1 (afv1)
23 | c3osvC_ |
| not modelled | 6.2 | 13 | PDB header:structural protein Chain: C: PDB Molecule:flagellar basal-body rod modification protein flgd; PDBTitle: the crytsal structure of flgd from p. aeruginosa
24 | c2voyG_ |
| not modelled | 5.4 | 32 | PDB header:hydrolase Chain: G: PDB Molecule:sarcoplasmic/endoplasmic reticulum calcium PDBTitle: cryoem model of copa, the copper transporting atpase from2 archaeoglobus fulgidus

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0