18/01/2012 19:48:56 : INFO  : Run start: Wed Jan 18 19:48:56 GMT 2012
18/01/2012 19:48:56 : INFO  : Initialised job
18/01/2012 19:48:56 : INFO  : Renaming log file 'phyre2_20120118_194856.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/34abc373566f6b8e/phyre_20120118_194856.log'
18/01/2012 19:48:56 : INFO  : Initialised job:
Sequence
>batch____
MQIIFGEKCVSLLRLFFAAVLMLWCAQTAAYSGQCHTTQGNPYIGVNFGVKTLEEEANTA
GVVKDKFYQWNESNDYYVSCDCDKDNVRSGRWAFAADSPLVYLGDNWYKINDYLAAKVLL
QVKGSSPTAVPFENVGTGGDTRWHICDPGGQRLGGQGASGNSGSFSLKILQPFVGSVVIP
PMALARLYECYNIPAGDSCTTTGTPVLVYYLSGTINSLGSCSVNAGETIEVDLGDVFAAN
FRVVGHKPLGARTAELAIPVRCNTGNAGLVNVNLSLTATTDPSYPQAIKTSRPGVGVVVT
DSQNNIISPAGGTLPLSIPDDADSIARMNVYPVSTTGVPPETGRFEATATVRINFD

18/01/2012 19:48:56 : INFO  : Checked sequence
18/01/2012 19:48:56 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 19:48:56 : INFO  : PSI-BLAST 3 iterations
18/01/2012 19:50:28 : INFO  : PSI-BLAST 5 iterations
18/01/2012 19:52:03 : INFO  : Finished PSI-BLAST
18/01/2012 19:52:03 : INFO  : Running Buildali to generate a3m file
18/01/2012 19:56:10 : INFO  : Converting to HMM
18/01/2012 19:56:11 : INFO  : Calibrating HMM
18/01/2012 19:56:20 : INFO  : Searching HMM database
18/01/2012 20:02:56 : INFO  : Finished buildali
18/01/2012 20:02:56 : INFO  : Predicting secondary structure
18/01/2012 20:02:56 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 20:02:57 : INFO  : Predicting Disordered regions
18/01/2012 20:02:57 : INFO  : Predicted Disorder (Disopred)
18/01/2012 20:02:57 : INFO  : Running memsat_svm check
18/01/2012 20:05:25 : INFO  : Running memsat_svm full
18/01/2012 20:09:02 : INFO  : Predicted Transmembrane (memsat_svm) ID '34abc373566f6b8e'
18/01/2012 20:09:02 : INFO  : Initialising fold library search
18/01/2012 20:09:02 : INFO  : Initialised search input
18/01/2012 20:09:02 : INFO  : Building Ensemble models
18/01/2012 20:09:03 : INFO  : Building hh.c1klfP_.model.1.pdb
18/01/2012 20:09:04 : INFO  : Building hh.c2w07B_.model.2.pdb
18/01/2012 20:09:04 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/34abc373566f6b8e/hh.c2w07B_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/34abc373566f6b8e/c2w07B_.2.pdb
18/01/2012 20:09:04 : INFO  : Building hh.c3bfwA_.model.3.pdb
18/01/2012 20:09:04 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/34abc373566f6b8e/hh.c3bfwA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/34abc373566f6b8e/c3bfwA_.3.pdb
18/01/2012 20:09:05 : INFO  : Building hh.c3jwnK_.model.4.pdb
18/01/2012 20:09:05 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/34abc373566f6b8e/hh.c3jwnK_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/34abc373566f6b8e/c3jwnK_.4.pdb
18/01/2012 20:09:05 : INFO  : Building hh.c3jwnL_.model.5.pdb
18/01/2012 20:09:06 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/34abc373566f6b8e/hh.c3jwnL_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/34abc373566f6b8e/c3jwnL_.5.pdb
18/01/2012 20:09:06 : INFO  : Building hh.c3jwnE_.model.6.pdb
18/01/2012 20:09:06 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/34abc373566f6b8e/hh.c3jwnE_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/34abc373566f6b8e/c3jwnE_.6.pdb
18/01/2012 20:09:06 : INFO  : Building c1klfP_.1.pdb
18/01/2012 20:09:07 : INFO  : Building c2w07B_.2.pdb
18/01/2012 20:09:08 : INFO  : Building c3bfwA_.3.pdb
18/01/2012 20:09:08 : INFO  : Building c3jwnK_.4.pdb
18/01/2012 20:09:09 : INFO  : Building c3jwnL_.5.pdb
18/01/2012 20:09:09 : INFO  : Building c3jwnE_.6.pdb
18/01/2012 20:09:10 : INFO  : Building c2jmrA_.7.pdb
18/01/2012 20:09:10 : INFO  : Building d2j2zb1.8.pdb
18/01/2012 20:09:10 : INFO  : Building c3jwnF_.9.pdb
18/01/2012 20:09:11 : INFO  : Building d1pdkb_.10.pdb
18/01/2012 20:09:12 : INFO  : Building c2jtyA_.11.pdb
18/01/2012 20:09:12 : INFO  : Building d2uy6b1.12.pdb
18/01/2012 20:09:13 : INFO  : Building d1n12a_.13.pdb
18/01/2012 20:09:13 : INFO  : Building d1ze3h1.14.pdb
18/01/2012 20:09:14 : INFO  : Building c3bwuF_.15.pdb
18/01/2012 20:09:14 : INFO  : Building d2bsca1.16.pdb
18/01/2012 20:09:14 : INFO  : Building d1oioa_.17.pdb
18/01/2012 20:09:15 : INFO  : Building c2wmpB_.18.pdb
18/01/2012 20:09:15 : INFO  : Building d1p5vb_.19.pdb
18/01/2012 20:09:16 : INFO  : Building c2wd6B_.20.pdb
18/01/2012 20:09:24 : INFO  : Finished HH model building
18/01/2012 20:09:24 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 20:09:30 : INFO  : html domain output complete ID '34abc373566f6b8e'
18/01/2012 21:07:55 : INFO  : Run end  : Wed Jan 18 21:07:55 GMT 2012
