15/01/2012 19:55:58 : INFO  : Run start: Sun Jan 15 19:55:58 GMT 2012
15/01/2012 19:55:58 : INFO  : Initialised job
15/01/2012 19:55:58 : INFO  : Renaming log file 'phyre2_20120115_195558.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/34463450d2d53420/phyre_20120115_195558.log'
15/01/2012 19:55:58 : INFO  : Initialised job:
Sequence
>batch____
MDDLTAQALKDFTARYCDAWHEEHKSWPLSEELYGVPSPCIISTTEDAVYWQPQPFTGEQ
NVNAVERAFDIVIQPTIHTFYTTQFAGDMHAQFGDIKLTLLQTWSEDDFRRVQENLIGHL
VTQKRLKLPPTLFIATLEEELEVISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLKPL
L

15/01/2012 19:55:58 : INFO  : Checked sequence
15/01/2012 19:55:58 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 19:55:58 : INFO  : PSI-BLAST 3 iterations
15/01/2012 19:57:22 : INFO  : PSI-BLAST 5 iterations
15/01/2012 19:58:13 : INFO  : Finished PSI-BLAST
15/01/2012 19:58:13 : INFO  : Running Buildali to generate a3m file
15/01/2012 20:00:00 : INFO  : Converting to HMM
15/01/2012 20:00:00 : INFO  : Calibrating HMM
15/01/2012 20:00:06 : INFO  : Searching HMM database
15/01/2012 20:03:29 : INFO  : Finished buildali
15/01/2012 20:03:29 : INFO  : Predicting secondary structure
15/01/2012 20:03:29 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 20:03:29 : INFO  : Predicting Disordered regions
15/01/2012 20:03:30 : INFO  : Predicted Disorder (Disopred)
15/01/2012 20:03:30 : INFO  : Running memsat_svm check
15/01/2012 20:04:39 : INFO  : Globular protein
15/01/2012 20:04:39 : INFO  : Predicted Transmembrane (memsat_svm) ID '34463450d2d53420'
15/01/2012 20:04:39 : INFO  : Initialising fold library search
15/01/2012 20:04:39 : INFO  : Initialised search input
15/01/2012 20:04:39 : INFO  : Building Ensemble models
15/01/2012 20:04:39 : INFO  : Building hh.c3ffvA_.model.1.pdb
15/01/2012 20:04:40 : INFO  : Building c3ffvA_.1.pdb
15/01/2012 20:04:40 : INFO  : Building c3d5pB_.2.pdb
15/01/2012 20:04:40 : INFO  : Building d2prva1.3.pdb
15/01/2012 20:04:41 : INFO  : Building d2icga1.4.pdb
15/01/2012 20:04:41 : INFO  : Building d2paga1.5.pdb
15/01/2012 20:04:41 : INFO  : Building c1hf9B_.6.pdb
15/01/2012 20:04:42 : INFO  : Building c1z5sD_.7.pdb
15/01/2012 20:04:42 : INFO  : Building c3o27B_.8.pdb
15/01/2012 20:04:42 : INFO  : Building d2bv3a4.9.pdb
15/01/2012 20:04:42 : INFO  : Building c2wryA_.10.pdb
15/01/2012 20:04:43 : INFO  : Building d1e2wa2.11.pdb
15/01/2012 20:04:43 : INFO  : Building d1ci3m2.12.pdb
15/01/2012 20:04:43 : INFO  : Building c3kepA_.13.pdb
15/01/2012 20:04:44 : INFO  : Building c1q2lA_.14.pdb
15/01/2012 20:04:44 : INFO  : Building c2jbuB_.15.pdb
15/01/2012 20:04:45 : INFO  : Building c3dx5A_.16.pdb
15/01/2012 20:04:45 : INFO  : Building c2wk3A_.17.pdb
15/01/2012 20:04:45 : INFO  : Building d1j83a_.18.pdb
15/01/2012 20:04:46 : INFO  : Building c3lgeF_.19.pdb
15/01/2012 20:04:46 : INFO  : Building c3lgeG_.20.pdb
15/01/2012 20:04:47 : INFO  : Finished HH model building
15/01/2012 20:04:47 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 20:04:50 : INFO  : html domain output complete ID '34463450d2d53420'
15/01/2012 20:10:54 : INFO  : Run end  : Sun Jan 15 20:10:54 GMT 2012
