HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/33ad1e6c1a47ab58/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/33ad1e6c1a47ab58/query.hhm DATE Wed Jan 11 02:49:42 2012 LENG 66 match states, 66 columns in multiple alignment FILT 101 out of 317 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 5.5 EVD 0.4626 2.5290 SEQ >ss_pred CCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCC >ss_conf 987668531138999999948999999999974998775231741124099999999999961289 >Consensus xxxxxxpxxllxxxxVxxxxGlsrstiyxxxxxgxfPxxiklGxrxxWxxsevxxWxxxxxxxxxg >batch____ MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLSRANG >UniRef50_B4RZR3(1-69:70) Phage transcriptional regulator, AlpA n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RZR3_ALTMD E=5e-10 s/c=0.95 id=25% cov=102% MENSVQTinDPILRMSDVEKTVGLKKPTIYKLIKKGEFPRQINLGGRaSGWLLSEINQWKAERIAISRG >UniRef50_Q1Q548(3-58:72) Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q548_9BACT E=0.0004 s/c=0.82 id=21% cov=44% ---------YVNIKEVSEYTSLPAKSLYEMASLGRIP----------------------------- >UniRef50_A1SE73(12-74:75) Putative uncharacterized protein n=1 Tax=Nocardioides sp. JS614 RepID=A1SE73_NOCSJ E=0.0007 s/c=0.71 id=20% cov=76% ---------------ICARLGVSRSTFYDWRQAHKAPPCLVLPNAqLRVREADFDRWVDERMETA-- >UniRef50_D0T2W6(5-70:73) Predicted protein n=2 Tax=Acinetobacter radioresistens RepID=D0T2W6_ACIRA E=8e-06 s/c=0.78 id=20% cov=91% -QHPTSTMCMLKLKDVINKCQISRSTIYDKLDQKskrydpDFPKPRKLGmNSVAWVENEVEQWLKNL------ >UniRef50_B5F477(5-70:76) Conserved domain protein n=2 Tax=Salmonella enterica subsp. enterica RepID=B5F477_SALA4 E=1e-05 s/c=0.77 id=19% cov=64% -----ENQTLISAKEVLRRVQRSKAWLYKQLSNNTFPRPVKIGTRA-------------------- >UniRef50_A7UYD4(45-95:104) Putative uncharacterized protein n=8 Tax=Bacteroides RepID=A7UYD4_BACUN E=3e-05 s/c=0.98 id=16% cov=77% ---EARKEKYLTKEEVKKMCGVCDTTLWHWSKKNYL-KPVKVGNKVRYRQSDIQ------------ >UniRef50_C0W9I1(9-60:66) Putative uncharacterized protein n=3 Tax=Acidaminococcus sp. D21 RepID=C0W9I1_9FIRM E=0.0009 s/c=0.86 id=18% cov=76% -------DQWISIEQVAKYLGVSSVTVRFWIRSGRGIPAVRIGRQWRFKKASIDEW---------- >UniRef50_A4SXY3(9-69:69) Phage transcriptional regulator, AlpA n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SXY3_POLSQ E=1e-06 s/c=0.89 id=15% cov=94% ---QIPPITLMRIPQILKVMPVSKSKFWLMVQKGEFPKPIKIGRSSFWTIEQVQTYLKERMDNS-- >UniRef50_C6RCE3(9-62:62) Putative uncharacterized protein n=1 Tax=Corynebacterium tuberculostearicum SK141 RepID=C6RCE3_9CORY E=0.0001 s/c=0.88 id=27% cov=50% --------------------------------RGKGPEFIRIAGRIYYLNTAVQEWLDKEIAAA-- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 2929 * 2898 716 * * * * * * 2989 * * 1 0 * * * * * * 3659 0 0 Q 2 * * * 3506 * * * * 2386 * * 3438 * 1185 3403 * 3412 * * * 2 0 * * * * * * 4164 0 0 H 3 * * * 3620 * * 967 * 3548 * * 2076 * * * 3567 * * * * 3 0 * * * * * * 4313 0 0 E 4 4052 * 2999 1469 * * * * * * * * 3842 1939 * 3978 4075 * * * 4 0 * * * * * * 4652 0 0 L 5 4173 * 4444 * * * * 3506 4524 2234 2571 4346 3446 4044 * 4494 3374 4510 * * 5 0 * * * * * * 5036 0 0 Q 6 4635 * * 3991 * * * 3721 5356 4647 * 4870 4566 1619 2345 4025 4022 * * 4840 6 0 * * * * * * 5236 0 0 P 7 5030 * 3720 4451 * * * * 4178 4072 * 5442 1013 4232 * 3600 3660 * * * 7 206 3239 5208 828 1195 * * 5318 2401 0 D 8 * * 1376 2378 * 5790 * 4855 4685 5625 5730 3880 * 3847 5801 4752 3657 * * 5644 8 0 * * * * 0 * 5455 0 1000 S 9 4126 5887 5268 3676 * 4818 5847 * 3479 * * 3755 5929 3732 1859 3742 3086 4468 * * 9 48 4927 * 1585 585 * * 5542 1000 0 L 10 * * * * 3334 * * 3546 * 771 4237 * 6328 * 6057 * * 5117 4658 3637 10 12 6968 * 2807 222 * * 5570 1000 0 V 11 * * * * * * * 1847 * 1205 4801 * * * * * * 1986 * * 11 0 * * * * * * 5585 0 0 D 12 * * 2665 * * * * * 3839 * * 3130 5824 * 1610 2484 2899 * * * 12 0 * * * * * * 5585 0 0 L 13 3670 6386 * 5092 * 6085 * 2094 5794 1790 2913 * * 5016 4240 4910 6614 4292 * 6274 13 0 * * * * * * 5560 0 0 K 14 6221 * 5243 2786 * * * * 1535 * * 4336 3051 3515 2795 5245 4571 * * * 14 0 * * * * * * 5558 0 0 F 15 4556 6190 2490 1583 4614 * 5929 * 6403 6291 5840 * * 2210 4617 5188 4981 * * 5909 15 0 * * * * * * 5558 0 0 I 16 5518 4610 * * 6533 * * 3379 * 2697 4961 * * * * * 5299 693 * * 16 0 * * * * * * 5836 0 0 M 17 2716 3701 * 3620 * 6313 * 3214 4048 2469 3449 * * 6273 4435 3527 4324 4614 * * 17 0 * * * * * * 5836 0 0 A 18 2562 * 5489 1929 * 6440 5737 5679 3039 * 5944 4306 * 3238 4167 5360 3247 5944 * * 18 0 * * * * * * 5838 0 0 D 19 5152 6099 6193 6241 5059 * 6148 3567 3262 2324 2914 * * 6029 2541 6996 4645 4914 * 3364 19 0 * * * * * * 5838 0 0 T 20 5721 4400 * * 5664 * * 3409 * 2169 5186 * * * * 6499 1268 3108 * 5169 20 0 * * * * * * 5731 0 0 G 21 4002 * * * * 577 * * 5165 * * 4604 3928 4841 * 4007 4826 * * * 21 19 6287 * 0 * * * 5781 1000 0 F 22 6027 6328 * * 4092 * * 2780 * 1502 3116 * * * 4597 * 5789 2198 * 5480 22 16 6483 * 0 * * * 5784 1000 0 G 23 4473 5064 * * * 2762 6244 * 3365 * * 5067 4136 * 6729 911 4668 * * * 23 0 * * * * * * 5767 0 0 K 24 5512 * 4732 5007 * * * * 1894 * 5612 5608 * 5452 1052 4537 4840 5925 * * 24 0 * * * * * * 5767 0 0 T 25 2873 * 5577 * * 5878 * * 4501 * * 6568 5712 5980 3768 1275 2197 5003 * * 25 0 * * * * * * 5767 0 0 F 26 5462 5612 * 5727 4208 6083 5864 * 5662 6983 5536 * * 6935 5980 3079 820 * 3828 5410 26 0 * * * * * * 5767 0 0 I 27 5237 * * * 3503 * * 1411 * 1638 * * * * 5924 * 6473 3000 4824 * 27 0 * * * * * * 5593 0 0 Y 28 6115 * * 4782 4957 * * * * 6018 * 5601 * 6147 3483 * * * 2794 659 28 19 6224 * 1000 1000 * * 5593 1000 0 D 29 4467 * 3086 3663 4533 6428 5973 * 3462 4796 * 4256 * 4015 1394 5141 5732 * * 5736 29 0 * * * * * * 5593 0 0 R 30 * * 6366 5338 * 4569 6523 * 3634 1655 2822 * * 4935 3047 5795 6467 * 2727 4774 30 14 6736 * 1000 1000 * * 5593 1000 0 I 31 3513 * * 3836 * * * 1707 6742 4079 2908 * * 4941 3848 6036 4503 2531 * * 31 17 6438 * 0 * * * 5626 1000 0 K 32 2909 * 5015 6683 * 6813 4697 * 1611 * 5722 3486 * 4567 2492 3504 5329 6633 * * 32 32 5529 * 2585 263 * * 5752 1789 0 S 33 3163 6497 2936 2894 * 5246 * 6045 2516 4717 6830 3313 * 4106 4379 3426 5537 6362 * 6007 33 13 6757 * 1000 1000 * * 5749 1000 0 G 34 6311 5352 5303 * * 613 5267 * 3811 * * 4190 5833 4290 5600 4909 6799 * * * 34 20 6195 * 2585 263 * * 5813 1478 0 D 35 4729 * 2734 3422 6590 * 6251 5782 2009 5074 * 4983 6705 4598 3024 5879 3001 6444 * 4641 35 0 * * * * * * 5791 0 0 L 36 4511 * * * 603 3147 * 4636 * 3834 * * * * * * * 4235 * 5561 36 31 * 5576 * * * * 5791 0 0 P 37 * * * * * * * 5221 * 5513 * * 72 * * * * * * * 37 16 * 6485 * * 0 * 5925 0 1627 K 38 3185 * * 4124 5371 * 6324 * 1639 5727 * 6562 2493 3948 2864 5366 5586 * * 5594 38 12 * 6974 * * 0 * 5912 0 1000 A 39 2958 4368 * * 4225 4197 * * 4592 5719 * 6369 1326 3540 4371 3343 * * * 6564 39 17 6391 * 0 * 0 * 5682 1000 1000 K 40 * * * * 4163 * 4966 1652 4125 4531 5907 * * 5061 3315 * 4603 1827 * 5424 40 0 * * * * * * 5791 0 0 V 41 5626 * 6628 * * 5729 4287 5928 1404 6166 * 7251 4144 3704 2432 3891 6372 4051 * 5246 41 25 * 5845 * * * * 5791 0 0 I 42 * * * 6057 5004 * * 1798 * 1251 4434 5384 * 5015 6493 * * 2903 * * 42 90 4044 * 996 1004 0 * 5775 2856 1000 H 43 6010 * * * * 512 6639 * 5845 * 5928 5486 5061 6275 * 2747 5309 * * * 43 160 3252 * 0 * * * 5791 3261 0 G 44 5116 * 4795 5845 * 1921 6724 * 3377 * * 3244 3543 5208 2037 4368 6171 5405 * * 44 31 5550 * 0 * * * 5791 2088 0 R 45 3474 5007 * * * 6249 6452 5015 4515 4417 6878 5344 * 4496 1140 2837 5453 6490 * 5182 45 276 2520 * 373 2134 * * 5791 3758 0 A 46 2617 * * * * * * 4327 4429 4140 5728 6397 5841 * 4788 2606 3038 1919 4342 * 46 190 3018 * 0 * * * 5794 3448 0 R 47 2410 * * * 3819 3071 * * 4958 5381 6530 * * * 1263 * 6400 3208 * 5787 47 85 4131 * 0 * * * 5880 2474 0 W 48 * * * * 3139 * * * * * * * * * * * * 5006 418 3226 48 0 * * * * * * 6006 0 0 L 49 5641 * 3693 5875 5390 * 6280 3894 3102 2577 6155 * 5253 * 2040 6746 4503 3397 5064 4797 49 0 * * * * * * 5778 0 0 Y 50 3500 * 6947 2037 4983 * 7225 4737 4782 2766 5094 5915 4293 4283 3534 4212 5959 4101 * 4724 50 0 * * * * * * 5641 0 0 R 51 2588 * 4314 3463 * 4668 4508 * 4164 * * 4527 * 4658 4473 1454 4365 6353 * * 51 0 * * * * * * 5641 0 0 D 52 4129 * 1266 1209 * * 6242 * * * * * * 4913 * 4378 * * * * 52 0 * * * * * * 5641 0 0 H 53 * * * * 4954 * 5776 1812 * 2369 * * * * * * * 1148 * 5668 53 0 * * * * * * 5646 0 0 C 54 4042 5000 2783 2536 * * 6925 4742 6331 3312 5523 4352 * 2400 3526 5717 6122 5661 * 4990 54 0 * * * * * * 5646 0 0 E 55 1751 * 3753 1949 * 6049 * * 6227 6733 * 3757 * 3440 3866 4485 4877 5765 * * 55 0 * * * * * * 5637 0 0 F 56 * 5892 * * 3716 * * * * 5175 * * * * * * * * 295 3953 56 51 4851 * 1259 780 * * 5637 1628 0 K 57 5395 * * 4852 * * * 1634 2964 2811 2801 * * 5019 5494 * * 2716 * * 57 0 * * * * * * 5291 0 0 N 58 2842 * 2387 4253 * 6280 * * 4240 5396 * 1899 * 4386 2733 4035 * * * * 58 0 * * * * * * 5272 0 0 K 59 2945 * 5766 2560 * 5270 * * 2340 * * 3206 * 2744 3843 3394 6031 5571 * * 59 0 * * * * * * 5252 0 0 L 60 4554 * * 5085 5503 * * 3802 2933 1891 * * * 2781 2149 * * 3990 * * 60 0 * * * * * * 5220 0 0 L 61 3937 * * 4926 * * * 2037 5145 2725 2317 * 5006 5619 * 5086 4180 2818 * * 61 0 * * * * * * 5140 0 0 S 62 2230 5313 3584 2433 * 5213 * 4821 3687 * * 5282 * 3585 5592 2397 4893 * * * 62 0 * * * * * * 5089 0 0 R 63 2585 * 5466 2219 * 5439 * 5626 3714 * * 2812 * 4965 3131 3897 3051 * * * 63 0 * * * * * * 5018 0 0 A 64 1172 * * * * 2438 * * * * * * * 4311 2657 2988 4776 * * * 64 0 * * * * * * 5022 0 0 N 65 * * 1736 2867 * * * * * * * 1425 * 3364 3425 * * * * * 65 0 * * * * * * 4172 0 0 G 66 2745 * * * * 233 * * * * * * * * * * * * * * 66 0 * * 0 * * * 3730 0 0 //