BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (66 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q1R904 Response regulator inhibitor for tor operon n=17... 140 1e-32 UniRef50_D2U0Z1 Response regulator inhibitor for tor operon n=1 ... 106 2e-22 UniRef50_C6ZR24 Conserved hypothetical phage protein n=2 Tax=roo... 64 2e-09 UniRef50_A3LAG5 Putative uncharacterized protein n=1 Tax=Pseudom... 42 0.006 UniRef50_B0KSV2 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 39 0.035 >UniRef50_Q1R904 Response regulator inhibitor for tor operon n=17 Tax=root RepID=TORI_ECOUT Length = 66 Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 66/66 (100%), Positives = 66/66 (100%) Query: 1 MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL Sbjct: 1 MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 Query: 61 LSRANG 66 LSRANG Sbjct: 61 LSRANG 66 >UniRef50_D2U0Z1 Response regulator inhibitor for tor operon n=1 Tax=Arsenophonus nasoniae RepID=D2U0Z1_9ENTR Length = 73 Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 50/64 (78%), Positives = 54/64 (84%) Query: 3 HELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLS 62 + LQPDS VD+KFIM DTGFGKTFIYDRIK G LPKAK+IHGRARWLY DH EFK KL+S Sbjct: 10 NRLQPDSWVDIKFIMQDTGFGKTFIYDRIKDGLLPKAKLIHGRARWLYADHLEFKRKLMS 69 Query: 63 RANG 66 NG Sbjct: 70 DGNG 73 >UniRef50_C6ZR24 Conserved hypothetical phage protein n=2 Tax=root RepID=C6ZR24_9CAUD Length = 87 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/59 (50%), Positives = 38/59 (64%) Query: 4 ELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLS 62 EL+ DSL+DLKF+M D+G GKTFIY IK G LP I +RW+Y D+ +K S Sbjct: 23 ELRDDSLIDLKFMMKDSGMGKTFIYSEIKKGKLPSPHKIGSASRWVYADYQNWKRSHFS 81 >UniRef50_A3LAG5 Putative uncharacterized protein n=1 Tax=Pseudomonas aeruginosa 2192 RepID=A3LAG5_PSEAE Length = 77 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%) Query: 2 QHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARW 48 QH+ P +DL + TG G TFIYD +K GD PK + RW Sbjct: 6 QHQDIP-RFIDLNMVKMRTGMGTTFIYDHMKKGDFPKGRKFGRATRW 51 >UniRef50_B0KSV2 Phage transcriptional regulator, AlpA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KSV2_PSEPG Length = 55 Score = 39.3 bits (90), Expect = 0.035, Method: Compositional matrix adjust. Identities = 16/42 (38%), Positives = 25/42 (59%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWL 49 ++L+D K + GF TF+Y ++ G PK + I R+RWL Sbjct: 3 EALLDRKEVCKRIGFSHTFVYKEMREGRFPKHRKIGNRSRWL 44 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q1R904 Response regulator inhibitor for tor operon n=17... 116 3e-25 UniRef50_D2U0Z1 Response regulator inhibitor for tor operon n=1 ... 109 3e-23 UniRef50_C6ZR24 Conserved hypothetical phage protein n=2 Tax=roo... 98 8e-20 Sequences not found previously or not previously below threshold: UniRef50_A7FES1 AlpA family protein n=29 Tax=Enterobacteriaceae ... 46 5e-04 UniRef50_B4SNK5 Phage transcriptional regulator, AlpA n=1 Tax=St... 46 5e-04 UniRef50_B8L8F8 Transcriptional regulator, AlpA family n=1 Tax=S... 45 6e-04 UniRef50_B5N8F3 Conserved domain protein n=1 Tax=Salmonella ente... 45 9e-04 UniRef50_B0KSV2 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 45 0.001 UniRef50_A3LAG5 Putative uncharacterized protein n=1 Tax=Pseudom... 44 0.001 UniRef50_D2TST7 Puative transcriptional regulator n=77 Tax=Enter... 44 0.002 UniRef50_A4XZH5 Phage transcriptional regulator, AlpA n=3 Tax=Ps... 44 0.002 UniRef50_UPI0001C34981 hypothetical protein PretD1_03214 n=1 Tax... 43 0.003 UniRef50_A6Q4M7 Transcriptional regulator n=1 Tax=Nitratiruptor ... 42 0.006 UniRef50_A4P080 Putative uncharacterized protein n=1 Tax=Haemoph... 42 0.007 UniRef50_B7SYF9 Gp29 n=2 Tax=root RepID=B7SYF9_9CAUD 41 0.012 UniRef50_Q2NBH3 Predicted transcriptional regulator n=4 Tax=Sphi... 40 0.024 UniRef50_Q46YP9 Prophage CP4-57 regulatory n=1 Tax=Ralstonia eut... 38 0.066 UniRef50_B0UVF0 Phage transcriptional regulator, AlpA n=4 Tax=Pa... 38 0.068 UniRef50_B2PWA4 Putative uncharacterized protein n=1 Tax=Provide... 38 0.069 UniRef50_A7JWN4 Possible bacteriophage transcriptional regulator... 38 0.078 UniRef50_B6XJ47 Putative uncharacterized protein n=1 Tax=Provide... 38 0.099 >UniRef50_Q1R904 Response regulator inhibitor for tor operon n=17 Tax=root RepID=TORI_ECOUT Length = 66 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 66/66 (100%), Positives = 66/66 (100%) Query: 1 MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL Sbjct: 1 MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 Query: 61 LSRANG 66 LSRANG Sbjct: 61 LSRANG 66 >UniRef50_D2U0Z1 Response regulator inhibitor for tor operon n=1 Tax=Arsenophonus nasoniae RepID=D2U0Z1_9ENTR Length = 73 Score = 109 bits (272), Expect = 3e-23, Method: Composition-based stats. Identities = 50/64 (78%), Positives = 54/64 (84%) Query: 3 HELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLS 62 + LQPDS VD+KFIM DTGFGKTFIYDRIK G LPKAK+IHGRARWLY DH EFK KL+S Sbjct: 10 NRLQPDSWVDIKFIMQDTGFGKTFIYDRIKDGLLPKAKLIHGRARWLYADHLEFKRKLMS 69 Query: 63 RANG 66 NG Sbjct: 70 DGNG 73 >UniRef50_C6ZR24 Conserved hypothetical phage protein n=2 Tax=root RepID=C6ZR24_9CAUD Length = 87 Score = 98.1 bits (243), Expect = 8e-20, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 38/59 (64%) Query: 4 ELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLS 62 EL+ DSL+DLKF+M D+G GKTFIY IK G LP I +RW+Y D+ +K S Sbjct: 23 ELRDDSLIDLKFMMKDSGMGKTFIYSEIKKGKLPSPHKIGSASRWVYADYQNWKRSHFS 81 >UniRef50_A7FES1 AlpA family protein n=29 Tax=Enterobacteriaceae RepID=A7FES1_YERP3 Length = 69 Score = 45.7 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 25/52 (48%) Query: 5 LQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEF 56 L DSLVD+ FI +G + Y I G PK + +RWL+ + + Sbjct: 7 LLEDSLVDMTFITTYSGMSDKWFYKLISDGTFPKPIKLGRSSRWLHSEVQAW 58 >UniRef50_B4SNK5 Phage transcriptional regulator, AlpA n=1 Tax=Stenotrophomonas maltophilia R551-3 RepID=B4SNK5_STRM5 Length = 71 Score = 45.7 bits (107), Expect = 5e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLSR 63 + + L+ L + TG G TFIY IK G P++ I RA W+ + + + +++ Sbjct: 6 RLEELLSLDRVRQMTGMGTTFIYGEIKVGRFPRSIRIGRRALWIQSEVQGWVRQQIAQ 63 >UniRef50_B8L8F8 Transcriptional regulator, AlpA family n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L8F8_9GAMM Length = 84 Score = 45.4 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%) Query: 7 PDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLS 62 P+ L+ L+ + A TG K++IY + G P + G RW D + S Sbjct: 8 PEVLLKLEQVEAQTGMKKSYIYREMDRGTFPPKHKVGGGTRWYQSDIQRWIRARRS 63 >UniRef50_B5N8F3 Conserved domain protein n=1 Tax=Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433 RepID=B5N8F3_SALET Length = 62 Score = 45.0 bits (105), Expect = 9e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 1 MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGR-ARWLYRDHCEFKNK 59 M + L+++K + G K+ IY+RI + + PK K + R +RW+ + E+K + Sbjct: 1 MTPVISDTDLINIKEVERSVGLKKSSIYERISNNEFPKPKKLGSRTSRWVRGEVEEWKKQ 60 Query: 60 LL 61 L Sbjct: 61 FL 62 >UniRef50_B0KSV2 Phage transcriptional regulator, AlpA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KSV2_PSEPG Length = 55 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 28/52 (53%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNK 59 ++L+D K + GF TF+Y ++ G PK + I R+RWL + ++ Sbjct: 3 EALLDRKEVCKRIGFSHTFVYKEMREGRFPKHRKIGNRSRWLESEVDDWIRS 54 >UniRef50_A3LAG5 Putative uncharacterized protein n=1 Tax=Pseudomonas aeruginosa 2192 RepID=A3LAG5_PSEAE Length = 77 Score = 44.2 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 22/43 (51%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRD 52 +DL + TG G TFIYD +K GD PK + RW + Sbjct: 13 FIDLNMVKMRTGMGTTFIYDHMKKGDFPKGRKFGRATRWAEAE 55 >UniRef50_D2TST7 Puative transcriptional regulator n=77 Tax=Enterobacteriaceae RepID=D2TST7_CITRO Length = 68 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 23/52 (44%) Query: 5 LQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEF 56 L D +VD+ FI TG + Y IK G P + +RWL + + Sbjct: 7 LMDDQMVDMAFITQLTGLTDKWFYKLIKDGAFPAPIKLGRSSRWLKSEVEAW 58 >UniRef50_A4XZH5 Phage transcriptional regulator, AlpA n=3 Tax=Pseudomonas RepID=A4XZH5_PSEMY Length = 78 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 24/52 (46%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNK 59 D L+ L + GFGKT IY +K G P+ I +RW + + K Sbjct: 19 DVLLQLPEVCRQAGFGKTAIYRMMKEGTFPEPIKIGPASRWSQIEVQAWIEK 70 >UniRef50_UPI0001C34981 hypothetical protein PretD1_03214 n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C34981 Length = 67 Score = 43.0 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 29/50 (58%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFK 57 D ++D+KFI+ D+GF + Y +++ + P+ +RW ++ ++K Sbjct: 7 DPMIDMKFIVNDSGFTDQYFYKKMRQKEFPRPIKFGRSSRWYLSEYNKWK 56 >UniRef50_A6Q4M7 Transcriptional regulator n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q4M7_NITSB Length = 64 Score = 41.9 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 5 LQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEF 56 LQ D L+D+K + + G K IY I+ G PK I RA RW + + ++ Sbjct: 6 LQQDRLIDIKEVSSLIGMKKPTIYKYIRDGKFPKPIKIGIRASRWSFNEVMQW 58 >UniRef50_A4P080 Putative uncharacterized protein n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4P080_HAEIN Length = 67 Score = 41.9 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 19/36 (52%) Query: 21 GFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEF 56 G T+IY ++K+G LP I +RW Y D + Sbjct: 24 GLSHTYIYKQVKAGALPPPVKIGRSSRWRYADVMTW 59 >UniRef50_B7SYF9 Gp29 n=2 Tax=root RepID=B7SYF9_9CAUD Length = 129 Score = 41.1 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 8/72 (11%) Query: 3 HELQPDSL-------VDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHC 54 HEL+ D++ + + + TG GKT IYDRI +G P + G A W+ + Sbjct: 51 HELKEDNMATEPLVFIKMPEVKRRTGLGKTTIYDRISAGTFPAPVPLGGNAVGWIEAEVD 110 Query: 55 EFKNKLLSRANG 66 ++ ++ +G Sbjct: 111 AWQAARVAERDG 122 >UniRef50_Q2NBH3 Predicted transcriptional regulator n=4 Tax=Sphingomonadales RepID=Q2NBH3_ERYLH Length = 88 Score = 40.0 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Query: 4 ELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLLS 62 E PD L+ L +MA G +T IY R++ G PK++ + R W+ + ++ ++ Sbjct: 15 EPTPDRLIRLPEVMARVGLRRTAIYQRMREGRFPKSRSLGPRCTVWVEAEIDDWIGSVVE 74 Query: 63 RAN 65 R + Sbjct: 75 RTD 77 >UniRef50_Q46YP9 Prophage CP4-57 regulatory n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46YP9_RALEJ Length = 67 Score = 38.4 bits (88), Expect = 0.066, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 21/47 (44%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEF 56 ++ L + G GKT IY RIK P + + W+ + ++ Sbjct: 9 IIRLPEVCERVGLGKTAIYGRIKDHTFPSPIKLGRASGWIEEEVQQW 55 >UniRef50_B0UVF0 Phage transcriptional regulator, AlpA n=4 Tax=Pasteurellaceae RepID=B0UVF0_HAES2 Length = 73 Score = 38.4 bits (88), Expect = 0.068, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 24/47 (51%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEF 56 L++++ + A TGF T IY + G+ PKAK RW D + Sbjct: 24 LINIEDVKAITGFSTTTIYKLMNKGEFPKAKKCGRSTRWRLADIESY 70 >UniRef50_B2PWA4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2PWA4_PROST Length = 84 Score = 38.4 bits (88), Expect = 0.069, Method: Composition-based stats. Identities = 15/47 (31%), Positives = 22/47 (46%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEF 56 LVD+K+I T + Y IK G PK + +RW D ++ Sbjct: 27 LVDMKYITECTKMTDKWFYALIKKGQFPKPIKLGRSSRWWLSDIHDW 73 >UniRef50_A7JWN4 Possible bacteriophage transcriptional regulator n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JWN4_PASHA Length = 83 Score = 38.4 bits (88), Expect = 0.078, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%) Query: 9 SLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLSRAN 65 S +++K + ++ IY +IK G PK I +RW + D F AN Sbjct: 27 SYLNVKDVCEMLQLNRSTIYRQIKQGIFPKPTKIGKSSRWKFADIKAFLEPKPQEAN 83 >UniRef50_B6XJ47 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XJ47_9ENTR Length = 65 Score = 38.0 bits (87), Expect = 0.099, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query: 1 MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGR-ARWLYRDHCEFKNK 59 ++ + + D L+ +K + K+ IY+ IK + P I R ARWL R+ E+K + Sbjct: 2 IETKERDDDLLTMKEVEKLVTLKKSTIYEMIKRKEFPSQHKIGVRAARWLRREINEWKQQ 61 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q1R904 Response regulator inhibitor for tor operon n=17... 93 2e-18 UniRef50_D2U0Z1 Response regulator inhibitor for tor operon n=1 ... 85 8e-16 UniRef50_C6ZR24 Conserved hypothetical phage protein n=2 Tax=roo... 84 2e-15 UniRef50_A7FES1 AlpA family protein n=29 Tax=Enterobacteriaceae ... 77 3e-13 UniRef50_D2TST7 Puative transcriptional regulator n=77 Tax=Enter... 75 6e-13 UniRef50_A4XZH5 Phage transcriptional regulator, AlpA n=3 Tax=Ps... 75 9e-13 UniRef50_B8L8F8 Transcriptional regulator, AlpA family n=1 Tax=S... 74 1e-12 UniRef50_B4SNK5 Phage transcriptional regulator, AlpA n=1 Tax=St... 72 6e-12 UniRef50_B0KSV2 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 69 3e-11 UniRef50_B5N8F3 Conserved domain protein n=1 Tax=Salmonella ente... 69 5e-11 UniRef50_A3LAG5 Putative uncharacterized protein n=1 Tax=Pseudom... 62 7e-09 Sequences not found previously or not previously below threshold: UniRef50_Q46YP9 Prophage CP4-57 regulatory n=1 Tax=Ralstonia eut... 61 1e-08 UniRef50_B7SYF9 Gp29 n=2 Tax=root RepID=B7SYF9_9CAUD 60 3e-08 UniRef50_A6Q4M7 Transcriptional regulator n=1 Tax=Nitratiruptor ... 58 8e-08 UniRef50_B2PWA4 Putative uncharacterized protein n=1 Tax=Provide... 57 1e-07 UniRef50_Q2NBH3 Predicted transcriptional regulator n=4 Tax=Sphi... 57 2e-07 UniRef50_C4UMX3 Prophage CP4-57 regulatory protein AlpA n=3 Tax=... 57 2e-07 UniRef50_C2LJX4 Possible phage transcriptional regulator n=1 Tax... 56 5e-07 UniRef50_B2JL38 Phage transcriptional regulator, AlpA n=2 Tax=Pr... 55 7e-07 UniRef50_UPI0001C34981 hypothetical protein PretD1_03214 n=1 Tax... 54 1e-06 UniRef50_Q0HVT5 Phage transcriptional regulator, AlpA n=14 Tax=c... 54 1e-06 UniRef50_A4TK05 Transcriptional regulator n=21 Tax=Enterobacteri... 53 2e-06 UniRef50_A4P080 Putative uncharacterized protein n=1 Tax=Haemoph... 53 2e-06 UniRef50_B0UVF0 Phage transcriptional regulator, AlpA n=4 Tax=Pa... 53 2e-06 UniRef50_Q0TV65 Phage AlpA family protein n=1 Tax=Thiomicrospira... 53 4e-06 UniRef50_UPI00019078FB hypothetical protein RetlG_16275 n=1 Tax=... 52 7e-06 UniRef50_A7JWN4 Possible bacteriophage transcriptional regulator... 52 7e-06 UniRef50_B8L4N0 Putative transcriptional regulator n=1 Tax=Steno... 51 9e-06 UniRef50_B6XJ47 Putative uncharacterized protein n=1 Tax=Provide... 51 1e-05 UniRef50_B4S218 Phage transcriptional regulator, AlpA n=2 Tax=Ga... 51 1e-05 UniRef50_B1SZZ6 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 50 2e-05 UniRef50_B5EWU9 Conserved domain protein n=61 Tax=Enterobacteria... 50 2e-05 UniRef50_Q5QX32 Prophage CP4-57 regulatory protein-like protein ... 50 2e-05 UniRef50_C5RZ65 Putative uncharacterized protein n=1 Tax=Actinob... 50 3e-05 UniRef50_A1WW70 Phage transcriptional regulator, AlpA n=2 Tax=Ga... 50 3e-05 UniRef50_A3Z0Z5 DNA-binding protein, putative n=2 Tax=Synechococ... 49 4e-05 UniRef50_P12552 Uncharacterized protein ORF88 n=40 Tax=root RepI... 49 4e-05 UniRef50_A5W5Z3 Phage transcriptional regulator, AlpA n=2 Tax=Ps... 49 5e-05 UniRef50_Q46Z77 Prophage CP4-57 regulatory n=2 Tax=Burkholderiac... 48 8e-05 UniRef50_D1TJS7 Putative uncharacterized protein n=1 Tax=Burkhol... 48 9e-05 UniRef50_A3VKJ6 DNA-binding protein, putative n=2 Tax=Proteobact... 48 9e-05 UniRef50_Q7P0B9 Probable prophage regulatory protein n=7 Tax=Pro... 48 1e-04 UniRef50_C1DSG0 Prophage CP4-57 regulatory, AlpA-like protein n=... 48 1e-04 UniRef50_A4CWC5 Predicted transcriptional regulator n=1 Tax=Syne... 48 1e-04 UniRef50_B4RZR3 Phage transcriptional regulator, AlpA n=1 Tax=Al... 48 1e-04 UniRef50_C8R2I6 Phage transcriptional regulator, AlpA n=1 Tax=De... 48 1e-04 UniRef50_A4TNW0 Transcriptional regulator n=18 Tax=Enterobacteri... 47 1e-04 UniRef50_B6B6B2 Transcriptional regulator, AlpA family n=2 Tax=R... 47 1e-04 UniRef50_Q7MJB2 Predicted transcriptional regulator n=47 Tax=Vib... 47 1e-04 UniRef50_A5UG77 Predicted transcriptional regulator n=1 Tax=Haem... 47 2e-04 UniRef50_Q13HX3 Phage transcriptional regulator, AlpA n=5 Tax=Pr... 47 2e-04 UniRef50_Q0HGG2 Phage transcriptional regulator, AlpA n=3 Tax=Ba... 47 2e-04 UniRef50_A7JWM9 Possible bacteriophage transcriptional regulator... 47 2e-04 UniRef50_Q8Z105 Phage DNA binding protein n=5 Tax=Enterobacteria... 47 3e-04 UniRef50_B0TKK3 Phage transcriptional regulator, AlpA n=1 Tax=Sh... 47 3e-04 UniRef50_A4SQA2 Prophage regulatory protein n=1 Tax=Aeromonas sa... 47 3e-04 UniRef50_B0U0W1 Phage transcriptional regulator, AlpA n=3 Tax=Ga... 46 3e-04 UniRef50_Q0I4F9 Phage transcriptional regulator, AlpA n=2 Tax=Ba... 46 3e-04 UniRef50_A4JAZ2 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 46 3e-04 UniRef50_D2MIG9 Prophage CP4-57 regulatory n=2 Tax=Candidatus Po... 46 3e-04 UniRef50_B2JC70 Phage transcriptional regulator, AlpA n=2 Tax=Bu... 46 3e-04 UniRef50_B2JD58 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 46 3e-04 UniRef50_UPI0000E0FEEA phage transcriptional regulator, AlpA n=1... 46 3e-04 UniRef50_Q1QLR6 Phage transcriptional regulator, AlpA n=1 Tax=Ni... 46 3e-04 UniRef50_A8AM43 Putative uncharacterized protein n=4 Tax=Enterob... 46 4e-04 UniRef50_A3UV40 Transcriptional regulator, putative n=2 Tax=Prot... 46 4e-04 UniRef50_A1TYD2 Phage transcriptional regulator, AlpA n=3 Tax=Pr... 46 4e-04 UniRef50_B5J7B4 Transcriptional regulator, AlpA family n=1 Tax=O... 46 4e-04 UniRef50_A9IRW1 Strain DSM 12804, complete genome n=1 Tax=Bordet... 46 4e-04 UniRef50_A1U0S6 Phage transcriptional regulator, AlpA n=2 Tax=Ga... 46 4e-04 UniRef50_B5F477 Conserved domain protein n=2 Tax=Salmonella ente... 45 6e-04 UniRef50_B5SEZ3 Bacteriophage dna-binding protein n=4 Tax=Proteo... 45 7e-04 UniRef50_Q47ZW9 Putative uncharacterized protein n=1 Tax=Colwell... 45 7e-04 UniRef50_D2TNW8 Putative uncharacterized protein n=1 Tax=Citroba... 45 8e-04 UniRef50_A9F5F5 Putative uncharacterized protein n=1 Tax=Phaeoba... 45 8e-04 UniRef50_B7VPA4 Predicted transcriptional regulator n=31 Tax=Gam... 45 0.001 UniRef50_C9PEM5 Putative uncharacterized protein n=1 Tax=Vibrio ... 44 0.001 UniRef50_A9IES4 Predicted transcriptional regulator n=1 Tax=Bord... 44 0.001 UniRef50_Q13ZB8 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 44 0.001 UniRef50_B0KMB7 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 44 0.001 UniRef50_Q1RPF9 ECs3513 protein n=4 Tax=Escherichia RepID=Q1RPF9... 44 0.001 UniRef50_Q2T3P9 Prophage regulatory protein AlpA family protein ... 44 0.001 UniRef50_A0Q4W2 Regulatory protein, AlpA family n=3 Tax=Francise... 44 0.001 UniRef50_UPI0001BCF8F6 hypothetical protein COK_1269 n=1 Tax=Man... 44 0.002 UniRef50_A5UG72 Putative uncharacterized protein n=1 Tax=Haemoph... 43 0.002 UniRef50_A9IYA6 Putative uncharacterized protein n=1 Tax=Bartone... 43 0.002 UniRef50_D2NKU9 Putative transcriptional regulator n=1 Tax=Esche... 43 0.002 UniRef50_Q2NDG2 Putative uncharacterized protein n=1 Tax=Erythro... 43 0.002 UniRef50_C6CIY7 Phage transcriptional regulator, AlpA n=3 Tax=Pr... 43 0.003 UniRef50_A4SPW1 Probable prophage regulatory protein n=1 Tax=Aer... 43 0.003 UniRef50_B6BP04 Transcriptional regulator, AlpA family n=1 Tax=C... 43 0.003 UniRef50_A0Q3W1 Regulatory protein, AlpA family n=6 Tax=Francise... 43 0.003 UniRef50_Q89BB6 Bsr8246 protein n=1 Tax=Bradyrhizobium japonicum... 43 0.003 UniRef50_D0M6T1 Phage transcriptional regulator AlpA n=1 Tax=Vib... 43 0.003 UniRef50_C5CXN0 Phage transcriptional regulator, AlpA n=2 Tax=Va... 43 0.004 UniRef50_D0BWH4 Phage protein (Fragment) n=1 Tax=Acinetobacter s... 43 0.004 UniRef50_D1UHG7 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 43 0.004 UniRef50_D0M3I3 Predicted transcriptional regulator n=1 Tax=Vibr... 42 0.004 UniRef50_A5VNH6 Prophage CP4-57 regulatory protein (AlpA) n=26 T... 42 0.004 UniRef50_B3Q046 Putative uncharacterized protein n=1 Tax=Rhizobi... 42 0.004 UniRef50_C4L9N9 Phage transcriptional regulator, AlpA n=11 Tax=P... 42 0.005 UniRef50_A1Z2Q5 Putative uncharacterized protein n=10 Tax=Entero... 42 0.006 UniRef50_A4SXY3 Phage transcriptional regulator, AlpA n=1 Tax=Po... 42 0.006 UniRef50_Q2NDL4 Putative uncharacterized protein n=1 Tax=Erythro... 42 0.008 UniRef50_Q2SPA0 Predicted transcriptional regulator n=1 Tax=Hahe... 42 0.008 UniRef50_B8KK13 Transcriptional regulator, AlpA family n=3 Tax=G... 42 0.008 UniRef50_B0RRY0 Putative uncharacterized protein n=2 Tax=Xanthom... 42 0.009 UniRef50_B6R1G6 Putative regulatory protein encoded in prophage ... 41 0.010 UniRef50_B6AMX6 Phage DNA binding protein n=2 Tax=Bacteria RepID... 41 0.011 UniRef50_D2NHT3 Hypothetical phage protein n=1 Tax=Escherichia c... 41 0.011 UniRef50_A3NM12 Prophage CP4-57 regulatory protein (AlpA) n=10 T... 41 0.012 UniRef50_A2PQ69 Prophage CP4-57 regulatory protein (AlpA) n=1 Ta... 41 0.013 UniRef50_C6XEE2 Phage transcriptional regulator, AlpA n=1 Tax=Me... 41 0.013 UniRef50_Q0C1G9 Prophage CP4-57 regulatory protein AlpA family p... 41 0.014 UniRef50_UPI0001AF502E phage transcriptional regulator, AlpA n=1... 41 0.014 UniRef50_D0J722 Possible bacteriophage transcriptional regulator... 41 0.015 UniRef50_A9FZ14 Putative uncharacterized protein n=1 Tax=Phaeoba... 40 0.017 UniRef50_B1Y1X4 Phage transcriptional regulator, AlpA n=1 Tax=Le... 40 0.017 UniRef50_B2FIP8 Putative phage regulatory protein n=1 Tax=Stenot... 40 0.017 UniRef50_D2LHF0 Phage transcriptional regulator, AlpA n=1 Tax=Rh... 40 0.018 UniRef50_D0Z915 Putative uncharacterized protein n=1 Tax=Edwards... 40 0.024 UniRef50_B8DSS4 Putative uncharacterized protein n=4 Tax=Bifidob... 40 0.024 UniRef50_C5V761 Phage transcriptional regulator, AlpA n=1 Tax=Ga... 40 0.027 UniRef50_A9D684 Phage transcriptional regulator, AlpA n=2 Tax=Al... 40 0.027 UniRef50_D0KY14 Phage transcriptional regulator, AlpA n=1 Tax=Ha... 40 0.027 UniRef50_C1SNK6 DNA-binding protein, excisionase family n=1 Tax=... 40 0.027 UniRef50_UPI00016ADB9E regulatory protein, AlpA family n=3 Tax=p... 40 0.028 UniRef50_Q3SF41 Possible Transcriptional Regulator n=2 Tax=Thiob... 40 0.028 UniRef50_A1SV81 Phage transcriptional regulator, AlpA n=4 Tax=Ga... 40 0.028 UniRef50_D0J4D1 Phage transcriptional regulator, AlpA n=1 Tax=Co... 40 0.029 UniRef50_B1JDS6 Phage transcriptional regulator, AlpA n=2 Tax=Ps... 40 0.030 UniRef50_A1SRJ5 Phage transcriptional regulator, AlpA n=1 Tax=Ps... 40 0.034 UniRef50_A0K329 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 40 0.034 UniRef50_Q6AR72 Putative uncharacterized protein n=1 Tax=Desulfo... 39 0.036 UniRef50_A1TJN4 Phage transcriptional regulator, AlpA n=28 Tax=P... 39 0.042 UniRef50_Q28S53 Phage transcriptional regulator, AlpA n=23 Tax=A... 39 0.049 UniRef50_A9FCF4 DNA-binding protein, putative n=6 Tax=Rhodobacte... 39 0.052 UniRef50_A3JW32 Prophage CP4-57 regulatory n=1 Tax=Rhodobacteral... 38 0.070 UniRef50_A1W718 Phage transcriptional regulator, AlpA n=1 Tax=Ac... 38 0.071 UniRef50_Q0A9S3 Phage transcriptional regulator, AlpA n=1 Tax=Al... 38 0.072 UniRef50_C7I2T3 Phage transcriptional regulator, AlpA n=1 Tax=Th... 38 0.072 UniRef50_B2JS19 Phage transcriptional regulator, AlpA n=1 Tax=Bu... 38 0.079 UniRef50_A6V7L4 Putative helicase n=1 Tax=Pseudomonas aeruginosa... 38 0.083 UniRef50_A6B241 Conserved domain protein n=2 Tax=Vibrio parahaem... 38 0.087 UniRef50_B5K0V3 Transcriptional regulator, AlpA family n=1 Tax=O... 38 0.089 UniRef50_A4JR07 Phage transcriptional regulator, AlpA n=6 Tax=Bu... 38 0.090 UniRef50_Q1NGR7 Putative uncharacterized protein n=1 Tax=Sphingo... 38 0.093 UniRef50_Q8DF51 Predicted phage-specific transcriptional regulat... 38 0.094 >UniRef50_Q1R904 Response regulator inhibitor for tor operon n=17 Tax=root RepID=TORI_ECOUT Length = 66 Score = 93.1 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 66/66 (100%), Positives = 66/66 (100%) Query: 1 MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL Sbjct: 1 MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 Query: 61 LSRANG 66 LSRANG Sbjct: 61 LSRANG 66 >UniRef50_D2U0Z1 Response regulator inhibitor for tor operon n=1 Tax=Arsenophonus nasoniae RepID=D2U0Z1_9ENTR Length = 73 Score = 84.7 bits (208), Expect = 8e-16, Method: Composition-based stats. Identities = 50/64 (78%), Positives = 54/64 (84%) Query: 3 HELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLS 62 + LQPDS VD+KFIM DTGFGKTFIYDRIK G LPKAK+IHGRARWLY DH EFK KL+S Sbjct: 10 NRLQPDSWVDIKFIMQDTGFGKTFIYDRIKDGLLPKAKLIHGRARWLYADHLEFKRKLMS 69 Query: 63 RANG 66 NG Sbjct: 70 DGNG 73 >UniRef50_C6ZR24 Conserved hypothetical phage protein n=2 Tax=root RepID=C6ZR24_9CAUD Length = 87 Score = 83.5 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 30/59 (50%), Positives = 38/59 (64%) Query: 4 ELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLS 62 EL+ DSL+DLKF+M D+G GKTFIY IK G LP I +RW+Y D+ +K S Sbjct: 23 ELRDDSLIDLKFMMKDSGMGKTFIYSEIKKGKLPSPHKIGSASRWVYADYQNWKRSHFS 81 >UniRef50_A7FES1 AlpA family protein n=29 Tax=Enterobacteriaceae RepID=A7FES1_YERP3 Length = 69 Score = 76.6 bits (187), Expect = 3e-13, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 28/64 (43%) Query: 1 MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 + L DSLVD+ FI +G + Y I G PK + +RWL+ + + Sbjct: 3 INPSLLEDSLVDMTFITTYSGMSDKWFYKLISDGTFPKPIKLGRSSRWLHSEVQAWLQAR 62 Query: 61 LSRA 64 + + Sbjct: 63 IEES 66 >UniRef50_D2TST7 Puative transcriptional regulator n=77 Tax=Enterobacteriaceae RepID=D2TST7_CITRO Length = 68 Score = 75.0 bits (183), Expect = 6e-13, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 27/60 (45%) Query: 5 LQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLSRA 64 L D +VD+ FI TG + Y IK G P + +RWL + + ++++ Sbjct: 7 LMDDQMVDMAFITQLTGLTDKWFYKLIKDGAFPAPIKLGRSSRWLKSEVEAWLQARIAQS 66 >UniRef50_A4XZH5 Phage transcriptional regulator, AlpA n=3 Tax=Pseudomonas RepID=A4XZH5_PSEMY Length = 78 Score = 74.6 bits (182), Expect = 9e-13, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 25/55 (45%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLS 62 D L+ L + GFGKT IY +K G P+ I +RW + + K + Sbjct: 19 DVLLQLPEVCRQAGFGKTAIYRMMKEGTFPEPIKIGPASRWSQIEVQAWIEKQKA 73 >UniRef50_B8L8F8 Transcriptional regulator, AlpA family n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L8F8_9GAMM Length = 84 Score = 73.9 bits (180), Expect = 1e-12, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%) Query: 7 PDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLS 62 P+ L+ L+ + A TG K++IY + G P + G RW D + S Sbjct: 8 PEVLLKLEQVEAQTGMKKSYIYREMDRGTFPPKHKVGGGTRWYQSDIQRWIRARRS 63 >UniRef50_B4SNK5 Phage transcriptional regulator, AlpA n=1 Tax=Stenotrophomonas maltophilia R551-3 RepID=B4SNK5_STRM5 Length = 71 Score = 72.0 bits (175), Expect = 6e-12, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLSR 63 + + L+ L + TG G TFIY IK G P++ I RA W+ + + + +++ Sbjct: 6 RLEELLSLDRVRQMTGMGTTFIYGEIKVGRFPRSIRIGRRALWIQSEVQGWVRQQIAQ 63 >UniRef50_B0KSV2 Phage transcriptional regulator, AlpA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KSV2_PSEPG Length = 55 Score = 69.3 bits (168), Expect = 3e-11, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 28/55 (50%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 ++L+D K + GF TF+Y ++ G PK + I R+RWL + ++ Sbjct: 1 MSEALLDRKEVCKRIGFSHTFVYKEMREGRFPKHRKIGNRSRWLESEVDDWIRSQ 55 >UniRef50_B5N8F3 Conserved domain protein n=1 Tax=Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433 RepID=B5N8F3_SALET Length = 62 Score = 68.9 bits (167), Expect = 5e-11, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 1/62 (1%) Query: 1 MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGR-ARWLYRDHCEFKNK 59 M + L+++K + G K+ IY+RI + + PK K + R +RW+ + E+K + Sbjct: 1 MTPVISDTDLINIKEVERSVGLKKSSIYERISNNEFPKPKKLGSRTSRWVRGEVEEWKKQ 60 Query: 60 LL 61 L Sbjct: 61 FL 62 >UniRef50_A3LAG5 Putative uncharacterized protein n=1 Tax=Pseudomonas aeruginosa 2192 RepID=A3LAG5_PSEAE Length = 77 Score = 61.9 bits (149), Expect = 7e-09, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 24/47 (51%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEF 56 +DL + TG G TFIYD +K GD PK + RW + ++ Sbjct: 13 FIDLNMVKMRTGMGTTFIYDHMKKGDFPKGRKFGRATRWAEAEIDQY 59 >UniRef50_Q46YP9 Prophage CP4-57 regulatory n=1 Tax=Ralstonia eutropha JMP134 RepID=Q46YP9_RALEJ Length = 67 Score = 60.8 bits (146), Expect = 1e-08, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 25/57 (43%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLSRANG 66 ++ L + G GKT IY RIK P + + W+ + ++ ++ + G Sbjct: 9 IIRLPEVCERVGLGKTAIYGRIKDHTFPSPIKLGRASGWIEEEVQQWVDEQIVATRG 65 >UniRef50_B7SYF9 Gp29 n=2 Tax=root RepID=B7SYF9_9CAUD Length = 129 Score = 59.6 bits (143), Expect = 3e-08, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLLSRA 64 +P + + + TG GKT IYDRI +G P + G A W+ + ++ ++ Sbjct: 61 EPLVFIKMPEVKRRTGLGKTTIYDRISAGTFPAPVPLGGNAVGWIEAEVDAWQAARVAER 120 Query: 65 NG 66 +G Sbjct: 121 DG 122 >UniRef50_A6Q4M7 Transcriptional regulator n=1 Tax=Nitratiruptor sp. SB155-2 RepID=A6Q4M7_NITSB Length = 64 Score = 58.1 bits (139), Expect = 8e-08, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 3 HELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIH-GRARWLYRDHCEFKNKL 60 LQ D L+D+K + + G K IY I+ G PK I +RW + + ++ + Sbjct: 4 PTLQQDRLIDIKEVSSLIGMKKPTIYKYIRDGKFPKPIKIGIRASRWSFNEVMQWIEER 62 >UniRef50_B2PWA4 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2PWA4_PROST Length = 84 Score = 57.3 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 23/51 (45%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 LVD+K+I T + Y IK G PK + +RW D ++ + Sbjct: 27 LVDMKYITECTKMTDKWFYALIKKGQFPKPIKLGRSSRWWLSDIHDWISSQ 77 >UniRef50_Q2NBH3 Predicted transcriptional regulator n=4 Tax=Sphingomonadales RepID=Q2NBH3_ERYLH Length = 88 Score = 56.9 bits (136), Expect = 2e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 7 PDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGR-ARWLYRDHCEFKNKLLSRAN 65 PD L+ L +MA G +T IY R++ G PK++ + R W+ + ++ ++ R + Sbjct: 18 PDRLIRLPEVMARVGLRRTAIYQRMREGRFPKSRSLGPRCTVWVEAEIDDWIGSVVERTD 77 >UniRef50_C4UMX3 Prophage CP4-57 regulatory protein AlpA n=3 Tax=Enterobacteriaceae RepID=C4UMX3_YERRU Length = 54 Score = 56.5 bits (135), Expect = 2e-07, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 24/52 (46%) Query: 13 LKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLSRA 64 + FI T + Y IK G PK + +RWL + + N+ ++++ Sbjct: 1 MVFITGFTQLTDKWFYKLIKDGSFPKPIKMGRSSRWLKSEVESWLNERIAQS 52 >UniRef50_C2LJX4 Possible phage transcriptional regulator n=1 Tax=Proteus mirabilis ATCC 29906 RepID=C2LJX4_PROMI Length = 68 Score = 55.8 bits (133), Expect = 5e-07, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSRA 64 L+ L ++ TG+ K++ Y I G+ PK I R+ R++ + E+ + ++ A Sbjct: 5 LLRLDEVLDRTGYSKSWTYKLIDKGEFPKQVKIGSRSVRFIESEVDEWIEQRINNA 60 >UniRef50_B2JL38 Phage transcriptional regulator, AlpA n=2 Tax=Proteobacteria RepID=B2JL38_BURP8 Length = 71 Score = 55.0 bits (131), Expect = 7e-07, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIH-GRARWLYRDHCEFK 57 + L+ + ++ TG T +Y RI G P+ + R WL + + Sbjct: 5 ERLLRMPEVVRRTGMSSTTVYRRISDGTFPRPVSLGCNRVAWLESEIDAWI 55 >UniRef50_UPI0001C34981 hypothetical protein PretD1_03214 n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C34981 Length = 67 Score = 54.2 bits (129), Expect = 1e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 30/53 (56%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 D ++D+KFI+ D+GF + Y +++ + P+ +RW ++ ++K+ Sbjct: 7 DPMIDMKFIVNDSGFTDQYFYKKMRQKEFPRPIKFGRSSRWYLSEYNKWKSNR 59 >UniRef50_Q0HVT5 Phage transcriptional regulator, AlpA n=14 Tax=cellular organisms RepID=Q0HVT5_SHESR Length = 73 Score = 53.8 bits (128), Expect = 1e-06, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSRANG 66 L+ +K ++ TG ++ IY + G PKA + R+ W+ + E+ + +++ +G Sbjct: 7 LIRIKDVIDTTGLARSTIYKYVDKGIFPKAVKLGSRSVAWVESEVQEWILERIAQRDG 64 >UniRef50_A4TK05 Transcriptional regulator n=21 Tax=Enterobacteriaceae RepID=A4TK05_YERPP Length = 61 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 9 SLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSR 63 L+ L+ + TG ++ IY +K G P++ I + WL + E+ NK LS Sbjct: 5 QLLRLRQVEQKTGLKRSQIYLYMKEGAFPRSIKIGPASVAWLESEIDEWINKKLSD 60 >UniRef50_A4P080 Putative uncharacterized protein n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4P080_HAEIN Length = 67 Score = 53.5 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Query: 10 LVDLKFIMADTG-FGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 L+ + I +G T+IY ++K+G LP I +RW Y D + + Sbjct: 12 LISMSEIRTLSGGLSHTYIYKQVKAGALPPPVKIGRSSRWRYADVMTWLSSF 63 >UniRef50_B0UVF0 Phage transcriptional regulator, AlpA n=4 Tax=Pasteurellaceae RepID=B0UVF0_HAES2 Length = 73 Score = 53.1 bits (126), Expect = 2e-06, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 24/50 (48%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNK 59 L++++ + A TGF T IY + G+ PKAK RW D + Sbjct: 24 LINIEDVKAITGFSTTTIYKLMNKGEFPKAKKCGRSTRWRLADIESYIAS 73 >UniRef50_Q0TV65 Phage AlpA family protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q0TV65_THICR Length = 64 Score = 52.7 bits (125), Expect = 4e-06, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 30/54 (55%) Query: 7 PDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 P+ L+ L + G K+ IY IK+G+ PK +VI G+A WL + + ++ Sbjct: 6 PEQLLPLPKVEMMIGLKKSKIYALIKTGEFPKNRVIKGKALWLSSEIQNWISEQ 59 >UniRef50_UPI00019078FB hypothetical protein RetlG_16275 n=1 Tax=Rhizobium etli GR56 RepID=UPI00019078FB Length = 61 Score = 51.5 bits (122), Expect = 7e-06, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 23/53 (43%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 D + L + G + IY IK+G+ PK + +RW R + ++ Sbjct: 5 DRFIRLADVQEMIGLKDSRIYQMIKAGEFPKPIKLGASSRWSLRAVEAWMSER 57 >UniRef50_A7JWN4 Possible bacteriophage transcriptional regulator n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JWN4_PASHA Length = 83 Score = 51.5 bits (122), Expect = 7e-06, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLSRAN 65 S +++K + ++ IY +IK G PK I +RW + D F AN Sbjct: 24 SEQSYLNVKDVCEMLQLNRSTIYRQIKQGIFPKPTKIGKSSRWKFADIKAFLEPKPQEAN 83 >UniRef50_B8L4N0 Putative transcriptional regulator n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L4N0_9GAMM Length = 79 Score = 51.2 bits (121), Expect = 9e-06, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGR-ARWLYRDHCEFKNKLLSRAN 65 L+ LK + A TG K IYDRI+ G+ P + G + W + + + N Sbjct: 13 LLRLKEVSARTGLAKNTIYDRIRRGEFPAQIDLGGNCSAWSEDEINAWIRSKMEARN 69 >UniRef50_B6XJ47 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XJ47_9ENTR Length = 65 Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIH-GRARWLYRDHCEFKNKLLS 62 + D L+ +K + K+ IY+ IK + P I ARWL R+ E+K + + Sbjct: 7 RDDDLLTMKEVEKLVTLKKSTIYEMIKRKEFPSQHKIGVRAARWLRREINEWKQQRTA 64 >UniRef50_B4S218 Phage transcriptional regulator, AlpA n=2 Tax=Gammaproteobacteria RepID=B4S218_ALTMD Length = 80 Score = 50.8 bits (120), Expect = 1e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 3 HELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLL 61 H + ++ L + A TGFG++ IY + +G+ P++ I RA WL D ++ Sbjct: 13 HPARQQRILRLPEVKAKTGFGRSTIYALMANGEFPRSIRIGARAVGWLESDIDQWIETRR 72 >UniRef50_B1SZZ6 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1SZZ6_9BURK Length = 72 Score = 50.4 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLL 61 +P+ L+ + A G K+ IY RI +G P + RA W ++ L Sbjct: 12 RPERLLRFAEVRARIGLSKSEIYRRIGAGTFPAGVKLGARAVAWRESAVEDWIRALR 68 >UniRef50_B5EWU9 Conserved domain protein n=61 Tax=Enterobacteriaceae RepID=B5EWU9_SALA4 Length = 72 Score = 50.4 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIH-GRARWLYRDHCEFKNKLL 61 + + L ++ TGFGKT+IY+ IK+G P ++ + E+ + Sbjct: 10 TTFIRLPEVIKRTGFGKTWIYELIKAGRFPSQVKTGIRAVAFIESEIDEWIEATI 64 >UniRef50_Q5QX32 Prophage CP4-57 regulatory protein-like protein n=2 Tax=Idiomarina RepID=Q5QX32_IDILO Length = 68 Score = 50.0 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKV-IHGRARWLYRDHCEFKNKLLSR 63 + + + G G+T IY + G PK + + W+ + E+ + ++ Sbjct: 3 FLRINEVRERIGLGRTSIYKMVNEGTFPKPVRVLGKKVAWVDSEVDEWMLERIAE 57 >UniRef50_C5RZ65 Putative uncharacterized protein n=1 Tax=Actinobacillus minor NM305 RepID=C5RZ65_9PAST Length = 81 Score = 49.6 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 23/49 (46%) Query: 12 DLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 + + A +GF FIY +I+ G LPKA +RW D + + Sbjct: 18 SMAELKALSGFSHAFIYRQIQKGKLPKADKWGRASRWKESDVKAWLSSF 66 >UniRef50_A1WW70 Phage transcriptional regulator, AlpA n=2 Tax=Gammaproteobacteria RepID=A1WW70_HALHL Length = 71 Score = 49.6 bits (117), Expect = 3e-05, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKL 60 + L+ + ++ G G++ IY ++K G PK + RA W D E+ ++ Sbjct: 13 ERLLRINSVIKRVGLGRSTIYKKVKEGGFPKPIKLGERAIAWRESDIEEWISRR 66 >UniRef50_A3Z0Z5 DNA-binding protein, putative n=2 Tax=Synechococcus RepID=A3Z0Z5_9SYNE Length = 68 Score = 49.2 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSRA 64 D L+ L ++ G +T IY I +G+ P+ VI RA W ++ + A Sbjct: 6 DRLLRLPEVIHRVGLSRTTIYSLIATGEFPRQIVIGPRAVAWSQQELEAWITSKRQAA 63 >UniRef50_P12552 Uncharacterized protein ORF88 n=40 Tax=root RepID=Y9K_BPP4 Length = 88 Score = 49.2 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 10/61 (16%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 3 HELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLL 61 ++ + + + +M G ++ IY+ I+ G+ P + G+ WL+ + + + Sbjct: 20 PDITQERFLRVPEVMHLCGLSRSTIYELIRKGEFPPQVSLGGKNVAWLHSEVTAWMAGRI 79 Query: 62 S 62 + Sbjct: 80 A 80 >UniRef50_A5W5Z3 Phage transcriptional regulator, AlpA n=2 Tax=Pseudomonas RepID=A5W5Z3_PSEP1 Length = 70 Score = 48.8 bits (115), Expect = 5e-05, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKL 60 D L+ L ++ TG G+ +Y RIK G PK I ++ W D ++ L Sbjct: 8 DRLLRLPDVLRITGMGRNTVYTRIKEGTFPKQVKIGPKSVAWRQSDINQWMASL 61 >UniRef50_Q46Z77 Prophage CP4-57 regulatory n=2 Tax=Burkholderiaceae RepID=Q46Z77_RALEJ Length = 87 Score = 48.1 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLS 62 +P+ + L ++A G + IYD ++ GD PK + G++ WL + ++ ++ Sbjct: 26 EPERFMRLPEVIAVCGLPASSIYDGMRRGDFPKPVPLAGKSVAWLSSEIRQWMESRIA 83 >UniRef50_D1TJS7 Putative uncharacterized protein n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TJS7_9BURK Length = 195 Score = 48.1 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNK 59 ++++ + +TG + IY RIK G P I + W D F Sbjct: 125 NAIMRRDEVERETGLSHSTIYKRIKDGTFPAPLKIGPGSTGWRVTDIEAFLAS 177 >UniRef50_A3VKJ6 DNA-binding protein, putative n=2 Tax=Proteobacteria RepID=A3VKJ6_9RHOB Length = 59 Score = 48.1 bits (113), Expect = 9e-05, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLS 62 D+L+ + A TG ++ IY + + D P+ + RA W D ++ N + Sbjct: 1 MTDNLLRRAEVEAITGLSRSGIYALMSANDFPRPIRVGKRAVAWKSSDITDWINSRAA 58 >UniRef50_Q7P0B9 Probable prophage regulatory protein n=7 Tax=Proteobacteria RepID=Q7P0B9_CHRVO Length = 72 Score = 48.1 bits (113), Expect = 1e-04, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLS 62 QP + L +++ G ++ +YD IK G P + G++ WL + + ++ Sbjct: 11 QPLRFLRLPEVISTCGLSRSSVYDAIKRGSFPAPVPLGGKSVAWLSSEIDVWMAGRIA 68 >UniRef50_C1DSG0 Prophage CP4-57 regulatory, AlpA-like protein n=1 Tax=Azotobacter vinelandii DJ RepID=C1DSG0_AZOVD Length = 95 Score = 47.7 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSR 63 L+ L + + TG K IY I++G P I + WL + ++ L+ Sbjct: 21 LLRLPDVESKTGKSKQAIYAAIRAGTFPAPVPIGRNSVAWLEAEVDQWIADRLTD 75 >UniRef50_A4CWC5 Predicted transcriptional regulator n=1 Tax=Synechococcus sp. WH 7805 RepID=A4CWC5_SYNPV Length = 64 Score = 47.7 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 5 LQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSR 63 L + L + T K+ IY ++ GD PK + R+ W+ ++ + ++ Sbjct: 2 LTSTQFIRLPQVKEITSLSKSSIYRLMEVGDFPKQVALGARSVVWVKSQIEDWCAEKVAT 61 Query: 64 ANG 66 A G Sbjct: 62 ALG 64 >UniRef50_B4RZR3 Phage transcriptional regulator, AlpA n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RZR3_ALTMD Length = 70 Score = 47.7 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLLSRANG 66 D ++ + + G K IY IK G+ P+ + GRA WL + ++K + ++ + G Sbjct: 10 DPILRMSDVEKTVGLKKPTIYKLIKKGEFPRQINLGGRASGWLLSEINQWKAERIAISRG 69 >UniRef50_C8R2I6 Phage transcriptional regulator, AlpA n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2I6_9DELT Length = 92 Score = 47.7 bits (112), Expect = 1e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Query: 7 PDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR----WLYRDHCEFKNKLLS 62 P L ++ + A TG ++ +YD +K G+ P+ + R ++ + + ++ Sbjct: 24 PLQLERVREVCARTGIPRSSLYDLLKKGEFPQPVKLGTGKRSQTAFVSHEIDAWIESRMA 83 Query: 63 RANG 66 G Sbjct: 84 ARQG 87 >UniRef50_A4TNW0 Transcriptional regulator n=18 Tax=Enterobacteriaceae RepID=A4TNW0_YERPP Length = 66 Score = 47.3 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 25/60 (41%), Gaps = 1/60 (1%) Query: 5 LQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSR 63 + +L+ L ++ K+ IY I P+ + R+ W+ + E+ +++ Sbjct: 1 MSDINLIRLPEVIEKIRLKKSSIYHLISLNQFPRPIKLGPRSVAWVESEVDEWVIIRINQ 60 >UniRef50_B6B6B2 Transcriptional regulator, AlpA family n=2 Tax=Rhodobacterales RepID=B6B6B2_9RHOB Length = 68 Score = 47.3 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 26/57 (45%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLSRA 64 D L+D+K + A + +Y I+ G+ PK + +RW D + + +A Sbjct: 11 DHLIDIKTVCATLCRSRASLYRDIQRGEFPKPIKLGNSSRWRMSDLNKIIDPDFPKA 67 >UniRef50_Q7MJB2 Predicted transcriptional regulator n=47 Tax=Vibrionaceae RepID=Q7MJB2_VIBVY Length = 73 Score = 47.3 bits (111), Expect = 1e-04, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 1/58 (1%) Query: 7 PDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSR 63 P + LK +M T ++ IY ++ G+ P++ + RA W+ + E+ L R Sbjct: 15 PMRFLKLKEVMEKTALSRSAIYRKMNDGEFPESVSLGERAIAWVESEVDEWMEMRLER 72 >UniRef50_A5UG77 Predicted transcriptional regulator n=1 Tax=Haemophilus influenzae PittGG RepID=A5UG77_HAEIG Length = 71 Score = 46.9 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSRA 64 Q + + L +M TG G++ IY ++ +GD P++ ++ WL + + + + Sbjct: 7 QAERFIKLPEVMNKTGLGRSSIYRKMNTGDFPRSIQLNKNNIVWLESEVNAWMQAQIEKR 66 Query: 65 N 65 N Sbjct: 67 N 67 >UniRef50_Q13HX3 Phage transcriptional regulator, AlpA n=5 Tax=Proteobacteria RepID=Q13HX3_BURXL Length = 75 Score = 46.9 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVI-HGRARWLYRDHCEFKNKLL 61 L+ L+ + G G + +Y + +G P+ I GR W+ + + Sbjct: 15 LIRLREVRTRVGLGASTVYRYLAAGKFPRPVEIGGGRVAWVESEIDAWIASRR 67 >UniRef50_Q0HGG2 Phage transcriptional regulator, AlpA n=3 Tax=Bacteria RepID=Q0HGG2_SHESM Length = 66 Score = 46.9 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLLS 62 + ++ L + + TG ++ IY RI G+ P + + RA WL D ++ ++ ++ Sbjct: 1 MSNKIMRLPEVKSRTGLSRSSIYLRISKGEFPASISLGDRAVGWLEADIEQWLDERIA 58 >UniRef50_A7JWM9 Possible bacteriophage transcriptional regulator n=1 Tax=Mannheimia haemolytica PHL213 RepID=A7JWM9_PASHA Length = 68 Score = 46.5 bits (109), Expect = 2e-04, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Query: 1 MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNK 59 M++ + + + A T +T IY ++K+GD P++ I ++ WL + ++ + Sbjct: 1 MENTPAKQRFMKIDEVSAVTTLSETQIYRKMKAGDFPQSISIGANSKVWLESEIQQWIQR 60 Query: 60 LLSR 63 + + Sbjct: 61 KIEQ 64 >UniRef50_Q8Z105 Phage DNA binding protein n=5 Tax=Enterobacteriaceae RepID=Q8Z105_SALTI Length = 107 Score = 46.5 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSRA 64 + + L +M G ++ IYD I PK + G+ W + + ++ Sbjct: 25 ERFIRLPEVMHLCGLSRSTIYDLISREAFPKQISLGGKNVAWAQSEITAWMTDRIATG 82 >UniRef50_B0TKK3 Phage transcriptional regulator, AlpA n=1 Tax=Shewanella halifaxensis HAW-EB4 RepID=B0TKK3_SHEHH Length = 71 Score = 46.5 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Query: 3 HELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLL 61 + QP+ L+ +K ++ T ++ IY ++ D PK+ + R+ W+ ++ ++ + Sbjct: 6 PKKQPNDLIKIKEVIQMTSLSRSTIYTKMNQQDFPKSISLSSRSVVWVRKELEDWIQNKM 65 Query: 62 SR 63 + Sbjct: 66 AE 67 >UniRef50_A4SQA2 Prophage regulatory protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SQA2_AERS4 Length = 69 Score = 46.5 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSR 63 L+ +K +++ G K IY R+K G P+ I ++ W+ + ++ +S Sbjct: 8 LLRIKDVISKVGLSKPTIYLRMKEGTFPRPVSIGPKSVAWVEHEINDWLTAKISE 62 >UniRef50_B0U0W1 Phage transcriptional regulator, AlpA n=3 Tax=Gammaproteobacteria RepID=B0U0W1_FRAP2 Length = 66 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLLSR 63 ++ LK ++ TG ++ IYD + G P+ + +R WLY + E+ + + Sbjct: 4 IIRLKTVIEMTGLSRSTIYDYMARGLFPRQITLGENSRGWLYSEVDEWLETRIQK 58 >UniRef50_Q0I4F9 Phage transcriptional regulator, AlpA n=2 Tax=Bacteria RepID=Q0I4F9_HAES1 Length = 61 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLLS 62 + ++ +K + TG ++ IY RIK G P + R+ W + + ++ S Sbjct: 2 ERILRIKDVCQKTGLPRSTIYARIKQGTFPAQLKLGARSSGWKESELDLWIEQIQS 57 >UniRef50_A4JAZ2 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia vietnamiensis G4 RepID=A4JAZ2_BURVG Length = 68 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLLSRANG 66 +V ++ ++ G K+ IY RI++G PK + RA WL D + + R Sbjct: 11 VVRMRCLLGRVGLSKSEIYRRIQAGAFPKPIPLGTRAVGWLESDINAWIDTQAKRGQA 68 >UniRef50_D2MIG9 Prophage CP4-57 regulatory n=2 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MIG9_9BACT Length = 81 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 7 PDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKL 60 PD L+ + + TG ++ +Y ++++G P + RA RW RD + Sbjct: 18 PDVLLTRREVERRTGLSRSTLYRKMRNGTFPVPVKVSERAVRWRDRDIRAYVESR 72 >UniRef50_B2JC70 Phage transcriptional regulator, AlpA n=2 Tax=Burkholderiaceae RepID=B2JC70_BURP8 Length = 73 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 7 PDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNK 59 P +++ + +TG ++ IY RIKSG P + R+ W D F Sbjct: 9 PTAIMRRPEVERETGLSRSTIYGRIKSGTFPPPVRLGVRSVGWRSADIEAFLTS 62 >UniRef50_B2JD58 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia phymatum STM815 RepID=B2JD58_BURP8 Length = 75 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 9 SLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSRA 64 L+ + + G ++ Y R+ G PK I A RW+ + + + + + Sbjct: 8 VLIPRRRMSELCGLQRSATYQRVSDGTFPKPVTIGSAAVRWVESEVISWVQRQIDES 64 >UniRef50_UPI0000E0FEEA phage transcriptional regulator, AlpA n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0FEEA Length = 71 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVI---HGRARWLYRDHCEFK 57 ++ + + TG K++IY + +G P++ + WL D ++ Sbjct: 9 ILRINDVAKKTGLSKSYIYALVHNGQFPQSIRLVKGGTAVGWLESDIEQWI 59 >UniRef50_Q1QLR6 Phage transcriptional regulator, AlpA n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QLR6_NITHX Length = 68 Score = 46.1 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 1/57 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSRAN 65 L+ L + TG G++ IY +I P + RW +++ L AN Sbjct: 3 LLKLTDVTKATGLGRSTIYRKISENTFPPPLQLSPGCVRWDADHLQAWRDALPIAAN 59 >UniRef50_A8AM43 Putative uncharacterized protein n=4 Tax=Enterobacteriaceae RepID=A8AM43_CITK8 Length = 66 Score = 46.1 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Query: 4 ELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGR-ARWLYRDHCEFKNKLL 61 + D + L+ + GFGK++IY +I+ P ++ R WL + + ++ + Sbjct: 2 VMNSDRFLRLRQVEDKIGFGKSWIYRQIQLQQFPPFIRLNSRHVAWLESEVDAWIHQRI 60 >UniRef50_A3UV40 Transcriptional regulator, putative n=2 Tax=Proteobacteria RepID=A3UV40_VIBSP Length = 74 Score = 46.1 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 1/64 (1%) Query: 1 MQHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNK 59 ++H++ L+ L+ ++ T ++ IY I+ PK + R+ W+ D + Sbjct: 7 VKHDMNKIKLIKLEAVIEMTTLSRSAIYRGIRECRFPKQVRLSRRSVAWVESDIQNWIKA 66 Query: 60 LLSR 63 ++ Sbjct: 67 QVAE 70 >UniRef50_A1TYD2 Phage transcriptional regulator, AlpA n=3 Tax=Proteobacteria RepID=A1TYD2_MARAV Length = 75 Score = 46.1 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 1/66 (1%) Query: 2 QHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKL 60 D ++ K + A TG ++ IY+ + +G PK I RA W + + Sbjct: 10 TTRQHLDRMLRRKEVEAITGRSRSAIYEGMAAGTFPKPVKIGARAVAWPESAIRNWIAER 69 Query: 61 LSRANG 66 + Sbjct: 70 MEGGQA 75 >UniRef50_B5J7B4 Transcriptional regulator, AlpA family n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J7B4_9RHOB Length = 62 Score = 46.1 bits (108), Expect = 4e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKL 60 + L+ + + TGF +T IY + G P+ + RW D ++ + L Sbjct: 3 EQLLKRRVVEEMTGFSRTTIYRLMAEGRFPRPLRTGENSVRWRMSDLQKWMDAL 56 >UniRef50_A9IRW1 Strain DSM 12804, complete genome n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IRW1_BORPD Length = 67 Score = 45.8 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Query: 9 SLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLLS 62 ++ + + TG + IY +K G P+ + R+ WL D + +S Sbjct: 6 QILRITDVTRITGLSRPAIYYNVKRGLFPRQIQLGPRSVGWLASDVEAWFQSRIS 60 >UniRef50_A1U0S6 Phage transcriptional regulator, AlpA n=2 Tax=Gammaproteobacteria RepID=A1U0S6_MARAV Length = 81 Score = 45.8 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVI---HGRARWLYRDHCEFKNKLLSR 63 +++ L + TG ++ +YD +GD PK+ + WL + + ++ Sbjct: 6 QTIIRLAETLRRTGLSRSTLYDLQTAGDFPKSIKLTRQGSAVGWLESEVNAWIEARVAE 64 >UniRef50_B5F477 Conserved domain protein n=2 Tax=Salmonella enterica subsp. enterica RepID=B5F477_SALA4 Length = 76 Score = 45.4 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSRANG 66 +L+ K ++ K ++Y ++ + P+ I RA ++ + + + + + G Sbjct: 11 QTLISAKEVLRRVQRSKAWLYKQLSNNTFPRPVKIGTRAISFVESEVDHWIQEQIYASRG 70 >UniRef50_B5SEZ3 Bacteriophage dna-binding protein n=4 Tax=Proteobacteria RepID=B5SEZ3_RALSO Length = 88 Score = 45.0 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 9/56 (16%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLS 62 + + L +M+ G ++ IY+++ +GD P+ + W+ + ++ ++ Sbjct: 29 ERFLRLPEVMSTCGLARSSIYEKVANGDFPQPVRLTRCCVAWVDSEIRQWMAARIA 84 >UniRef50_Q47ZW9 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47ZW9_COLP3 Length = 103 Score = 45.0 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFK 57 L+ LK +M+ +G G++ IY ++ G P + + RA W + E+ Sbjct: 3 LIRLKEVMSISGLGRSSIYKFMEEGRFPMSISLGERAIAWEVSEVEEWV 51 >UniRef50_D2TNW8 Putative uncharacterized protein n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TNW8_CITRO Length = 79 Score = 45.0 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 2 QHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKL 60 ++E + + ++ GF +T +Y+RIK G+ P I R ++ + E+ Sbjct: 11 KNEYIAKRFIRVPDVLNRVGFSRTTLYERIKEGNFPDRVKIGPRCVAFVESEIDEWIEAT 70 Query: 61 L 61 + Sbjct: 71 I 71 >UniRef50_A9F5F5 Putative uncharacterized protein n=1 Tax=Phaeobacter gallaeciensis 2.10 RepID=A9F5F5_9RHOB Length = 70 Score = 45.0 bits (105), Expect = 8e-04, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 20/49 (40%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHC 54 + + +M K+ +Y R+ G LPK + +R++ + Sbjct: 1 MSEKYLTPDEVMQRLNLTKSSLYRRVNDGTLPKPIKLGHLSRFIASEIQ 49 >UniRef50_B7VPA4 Predicted transcriptional regulator n=31 Tax=Gammaproteobacteria RepID=B7VPA4_VIBSL Length = 63 Score = 44.6 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLL 61 L+ L ++ TG ++ +Y I+ P I RA W+ + ++ + + Sbjct: 8 LIRLNEVLVMTGLSRSGMYRSIEKQQFPSQVPIGDRAVAWVESEVQDWVRQRV 60 >UniRef50_C9PEM5 Putative uncharacterized protein n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PEM5_VIBFU Length = 75 Score = 44.2 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 5 LQPDSLVDLKFIMADTGF-GKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLLS 62 L D ++ ++A TG + IY+ ++ G PK I + WL + +K L+S Sbjct: 10 LNIDPVLRFPEVLALTGARSRQTIYNWMERGTFPKPIKIGPNSIGWLKSECDAWKGHLIS 69 Query: 63 R 63 Sbjct: 70 N 70 >UniRef50_A9IES4 Predicted transcriptional regulator n=1 Tax=Bordetella petrii DSM 12804 RepID=A9IES4_BORPD Length = 86 Score = 44.2 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 9 SLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGR-ARWLYRDHCEFKNK 59 + L+ ++ ++ +Y RI G P + GR + W D E+ N Sbjct: 21 AFYRLRDVVRIAALSRSTVYRRIAEGRFPAPIHLGGRASAWPSNDLQEWINS 72 >UniRef50_Q13ZB8 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia xenovorans LB400 RepID=Q13ZB8_BURXL Length = 103 Score = 44.2 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 2 QHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKL 60 + ++ + ++ G+T IY+ IK LP+ + RAR W+ + E KL Sbjct: 37 TPTMSHSRVIRMPDLLQMYPVGRTTIYELIKMQKLPRPIALSKRARGWVLSEIEECIAKL 96 Query: 61 LSRAN 65 + AN Sbjct: 97 KAEAN 101 >UniRef50_B0KMB7 Phage transcriptional regulator, AlpA n=1 Tax=Pseudomonas putida GB-1 RepID=B0KMB7_PSEPG Length = 69 Score = 44.2 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSRA 64 L+ L + A G K+ IY I++G+ P + + W + + ++ A Sbjct: 10 LLRLPGVCALVGLSKSQIYRLIRAGEFPAGISLGANSVAWPAEQVSAWVAEKINAA 65 >UniRef50_Q1RPF9 ECs3513 protein n=4 Tax=Escherichia RepID=Q1RPF9_ECOLX Length = 72 Score = 44.2 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLL 61 + + ++ GF +T +Y+RIK G+ P I R ++ + E+ + Sbjct: 12 FIRVPDVLNRVGFSRTTLYERIKEGNFPDRVKIGPRCVAFVESEIDEWIEAAI 64 >UniRef50_Q2T3P9 Prophage regulatory protein AlpA family protein n=3 Tax=pseudomallei group RepID=Q2T3P9_BURTA Length = 72 Score = 44.2 bits (103), Expect = 0.001, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%) Query: 5 LQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLLSR 63 +QP +V + ++ G ++ + RIK+G P+ + RA ++ D + L +R Sbjct: 10 IQPRRIVRMPALLERVGLSESEVRRRIKAGTFPRPVKLGPRAIGFVVADVDAWLEALTTR 69 >UniRef50_A0Q4W2 Regulatory protein, AlpA family n=3 Tax=Francisella RepID=A0Q4W2_FRATN Length = 72 Score = 43.8 bits (102), Expect = 0.001, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVI-HGRARWLYRDHCEFKNKLLSRAN 65 L+ + + G K I+ ++G PK + WL + E+ K + N Sbjct: 12 LLRAEEVARCIGMSKNSIFRMARAGKFPKQIRVSGQTTAWLESEVREWIAKRVKERN 68 >UniRef50_UPI0001BCF8F6 hypothetical protein COK_1269 n=1 Tax=Mannheimia haemolytica serotype A2 str. BOVINE RepID=UPI0001BCF8F6 Length = 66 Score = 43.8 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 24/59 (40%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLSRANG 66 + ++ + I A G ++ IY +KS P +RW D ++ N +G Sbjct: 5 QTYLNAQEIAAHLGISRSGIYSLMKSSHFPSPVKFGRLSRWKVDDLRQWLNNQEQNQDG 63 >UniRef50_A5UG72 Putative uncharacterized protein n=1 Tax=Haemophilus influenzae PittGG RepID=A5UG72_HAEIG Length = 71 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 23/56 (41%) Query: 5 LQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 + +L+ ++ + +T IY +K G+ PK RW D + +K Sbjct: 1 MTLKTLLTIQELEEMGIAKRTKIYYMMKRGNFPKPLKYDRTNRWAREDVQAWLDKQ 56 >UniRef50_A9IYA6 Putative uncharacterized protein n=1 Tax=Bartonella tribocorum CIP 105476 RepID=A9IYA6_BART1 Length = 91 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 24/61 (39%) Query: 5 LQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLSRA 64 ++ LV+++ + G T I + +K G+ PK +W + + + Sbjct: 23 MRLQRLVNIQDLSIYLGMSMTCIRELVKDGNFPKPIKEGRYLKWDIVEIDRYIESKKAER 82 Query: 65 N 65 N Sbjct: 83 N 83 >UniRef50_D2NKU9 Putative transcriptional regulator n=1 Tax=Escherichia coli SE15 RepID=D2NKU9_ECOLX Length = 75 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLL 61 L+ + ++ TG K+ IY +IK+ + P I R+ W+ + E+ K + Sbjct: 16 LLRISEVINLTGLPKSTIYLKIKNDEFPNQVSIGSRSVAWVEHEVNEWIEKNI 68 >UniRef50_Q2NDG2 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NDG2_ERYLH Length = 77 Score = 43.4 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSRA 64 Q L+ L + G G++ IY + G P + G + W R + ++ L A Sbjct: 18 QVTRLIHLPEVQHRVGLGRSTIYRWMAEGKFPGPVELGGYSVAWEERAIDVWISQRLDSA 77 >UniRef50_C6CIY7 Phage transcriptional regulator, AlpA n=3 Tax=Proteobacteria RepID=C6CIY7_DICZE Length = 70 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 2 QHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIH-GRARWLYRDHCEFKNKL 60 + + ++ + A TGF + IY+ +K G PKA + W + ++ Sbjct: 6 TNLVPERRILRRAEVEAKTGFKRAHIYNLMKEGKFPKALHLGVRAVGWDSAEIDQWITDR 65 Query: 61 LSR 63 L Sbjct: 66 LKE 68 >UniRef50_A4SPW1 Probable prophage regulatory protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SPW1_AERS4 Length = 77 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 24/58 (41%), Gaps = 2/58 (3%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVI--HGRARWLYRDHCEFKNKLLSRAN 65 + ++ + TG K+ IYD + G PK + ++ + + + ++ N Sbjct: 17 FIRVREAINRTGLSKSSIYDMMAQGQFPKTVRLGSGRSVAFIEAEIDAWMAERVAARN 74 >UniRef50_B6BP04 Transcriptional regulator, AlpA family n=1 Tax=Campylobacterales bacterium GD 1 RepID=B6BP04_9PROT Length = 51 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 20/51 (39%) Query: 11 VDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLL 61 + L+ ++ ++ +Y I P I +RWL +D + + Sbjct: 1 MKLQQVINKVAISRSELYKLIALNKFPPQIKIGKMSRWLEKDIINWIQSHV 51 >UniRef50_A0Q3W1 Regulatory protein, AlpA family n=6 Tax=Francisella RepID=A0Q3W1_FRATN Length = 59 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLL 61 ++ LK ++ TG KT IY I + PK + + WL D ++ + Sbjct: 3 ILRLKQVVEMTGTSKTTIYRWINANQFPKPINLSHASVGWLEADINDWIQSKI 55 >UniRef50_Q89BB6 Bsr8246 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89BB6_BRAJA Length = 80 Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 3 HELQPDSLVDLKFIMADTG-FGKTFIYDRIKSGDLPKA-KVIHGRAR-WLYRDHCEFKNK 59 + L D ++ K + G T+++ R++ P+ + GR R WL + E++ Sbjct: 10 NALATDQYLNAKQVRERYGSVSNTWLFRRMRDAAFPQPSTRLGGRTRFWLLSELLEWERS 69 Query: 60 LL 61 L Sbjct: 70 KL 71 >UniRef50_D0M6T1 Phage transcriptional regulator AlpA n=1 Tax=Vibrio sp. Ex25 RepID=D0M6T1_VIBSE Length = 66 Score = 42.7 bits (99), Expect = 0.003, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 1/54 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLLS 62 ++ L ++ TG ++ IY R+ G P + + RA WL D ++ + +S Sbjct: 5 IIRLPEVIDMTGLSRSTIYLRMSQGSFPLSISLGERAVGWLKVDIEKWLDACVS 58 >UniRef50_C5CXN0 Phage transcriptional regulator, AlpA n=2 Tax=Variovorax paradoxus S110 RepID=C5CXN0_VARPS Length = 88 Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 1/50 (2%) Query: 9 SLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFK 57 + + ++ T +T +Y RI G P + GRA W + Sbjct: 21 AFFRMADVIRITALSRTTVYRRIADGKFPPPVHLGGRASGWPRAALQRWI 70 >UniRef50_D0BWH4 Phage protein (Fragment) n=1 Tax=Acinetobacter sp. RUH2624 RepID=D0BWH4_9GAMM Length = 56 Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 6/55 (10%) Query: 9 SLVDLKFIMADTGFGKTFIYDRIK------SGDLPKAKVIHGRARWLYRDHCEFK 57 L+ L + TG ++ IYDR+ P+A + +RW + + Sbjct: 2 QLIRLPELEKLTGLSRSSIYDRLNPKSKRYDSTFPRAIKLSHSSRWRLSEVLNWI 56 >UniRef50_D1UHG7 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia sp. CCGE1001 RepID=D1UHG7_9BURK Length = 70 Score = 42.7 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 1/56 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIH-GRARWLYRDHCEFKNKLLS 62 D ++ +K ++ G + IY I G+ P+ I W + + + Sbjct: 2 DQVMRMKDVVKKIGLCRATIYAMISRGEFPRPIRIGERATGWRESELEGWLANRAA 57 >UniRef50_D0M3I3 Predicted transcriptional regulator n=1 Tax=Vibrio sp. Ex25 RepID=D0M3I3_VIBSE Length = 62 Score = 42.3 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 28/53 (52%), Gaps = 1/53 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLL 61 ++L+ + T K+ IY +K+G+ PK + G+++ W ++ ++ + Sbjct: 4 FLNLEQVETKTTLCKSTIYKLMKNGEFPKNFTVSGKSKAWDEKEVEDWMMSKI 56 >UniRef50_A5VNH6 Prophage CP4-57 regulatory protein (AlpA) n=26 Tax=Rhizobiales RepID=A5VNH6_BRUO2 Length = 72 Score = 42.3 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 19/59 (32%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLSRANG 66 D L+ + Y RI G LPK + +RW + ++ N Sbjct: 5 DPLLTAREGAKYLQVSLPTFYRRIADGTLPKPIKMGSLSRWSQSEILAAVEYAKAKRNA 63 >UniRef50_B3Q046 Putative uncharacterized protein n=1 Tax=Rhizobium etli CIAT 652 RepID=B3Q046_RHIE6 Length = 68 Score = 42.3 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 10/58 (17%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVI-HGRARWLYRDHCEFKNKLLSRANG 66 ++ ++ ++ TG + +Y I G P+ + R W D + + ++ +G Sbjct: 8 ILPIEEVIDRTGLSRRTLYQEISEGRFPRPVQLTSRRVGWPENDVDTWIDHKIAARDG 65 >UniRef50_C4L9N9 Phage transcriptional regulator, AlpA n=11 Tax=Proteobacteria RepID=C4L9N9_TOLAT Length = 79 Score = 42.3 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 24/53 (45%), Gaps = 1/53 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIH-GRARWLYRDHCEFKNKLL 61 ++ L + A +GF + IY +K G+ P++ + W + + + L Sbjct: 14 ILRLDEVEAKSGFKRAHIYSLMKKGEFPQSLRLGVRAVGWDSTEIDLWITERL 66 >UniRef50_A1Z2Q5 Putative uncharacterized protein n=10 Tax=Enterobacteriaceae RepID=A1Z2Q5_ECOLX Length = 62 Score = 41.9 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 5 LQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNK 59 L D + K TG +T Y K+G P + + GR+ W + +K+ Sbjct: 2 LSTDRFIREKECEKLTGLSRTCRYRLEKAGQFPSRRKLGGRSVGWSLSEVLAWKDS 57 >UniRef50_A4SXY3 Phage transcriptional regulator, AlpA n=1 Tax=Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1 RepID=A4SXY3_POLSQ Length = 69 Score = 41.9 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 9/63 (14%), Positives = 25/63 (39%) Query: 2 QHELQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLL 61 ++ P +L+ + I+ K+ + ++ G+ PK I + W + + + Sbjct: 7 SPQIPPITLMRIPQILKVMPVSKSKFWLMVQKGEFPKPIKIGRSSFWTIEQVQTYLKERM 66 Query: 62 SRA 64 + Sbjct: 67 DNS 69 >UniRef50_Q2NDL4 Putative uncharacterized protein n=1 Tax=Erythrobacter litoralis HTCC2594 RepID=Q2NDL4_ERYLH Length = 64 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 2/58 (3%) Query: 5 LQPDSLVDLKFIMADTGF-GKTFIYDRIKSGDLPKAKVIH-GRARWLYRDHCEFKNKL 60 +Q L+ + +M TG + I+ RIK G P I GR RW + + N L Sbjct: 1 MQQSELLSCQDVMRLTGIRSRATIWRRIKKGTFPNPVDIGSGRIRWRVAEVENWINDL 58 >UniRef50_Q2SPA0 Predicted transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPA0_HAHCH Length = 71 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLLS 62 + + +K TG ++ IY+R+ SG P + RA W +++ L + Sbjct: 1 MAEMIFRIKETTKLTGLSRSTIYERVASGSFPPPVSLGHRAVGWFESSLDDWQASLKA 58 >UniRef50_B8KK13 Transcriptional regulator, AlpA family n=3 Tax=Gammaproteobacteria RepID=B8KK13_9GAMM Length = 82 Score = 41.5 bits (96), Expect = 0.008, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 3/51 (5%) Query: 16 IMADTGFGKTFIYDRIKSGDLPKAKVI--HGRAR-WLYRDHCEFKNKLLSR 63 + TG +++IY G PK+ + G +R W+ + ++ + ++ Sbjct: 24 VQDLTGLSRSYIYALAAQGRFPKSVALVPGGTSRAWVESEVFDWLEQRIAE 74 >UniRef50_B0RRY0 Putative uncharacterized protein n=2 Tax=Xanthomonas RepID=B0RRY0_XANCB Length = 142 Score = 41.5 bits (96), Expect = 0.009, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVI--HGRARWLYRDHCEFKNKLLSR 63 P + L ++A G K+ +Y +G PK A W+ + + + + Sbjct: 74 LPYHFMRLPEVIATVGVSKSTLYAWAAAGKFPKPVQFPGGNIAAWVSTEVAAWMSAAVDA 133 Query: 64 ANG 66 NG Sbjct: 134 RNG 136 >UniRef50_B6R1G6 Putative regulatory protein encoded in prophage CP-933I n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R1G6_9RHOB Length = 66 Score = 41.1 bits (95), Expect = 0.010, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 1/55 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKA-KVIHGRARWLYRDHCEFKNKLL 61 D + + A G ++ IY + D P ++I RW + + Sbjct: 6 DRYLARPEVEAVLGLSRSTIYKLLSEDDFPPPTRLIGRSVRWRLSEIMSWAENKR 60 >UniRef50_B6AMX6 Phage DNA binding protein n=2 Tax=Bacteria RepID=B6AMX6_9BACT Length = 60 Score = 41.1 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNK 59 D ++ L +++ G ++ +Y I G P+ + R W D ++ Sbjct: 2 DRILRLPEVLSTVGISRSSLYALIAQGQFPRQIRLSPRTSGWRLSDVEDWIRA 54 >UniRef50_D2NHT3 Hypothetical phage protein n=1 Tax=Escherichia coli SE15 RepID=D2NHT3_ECOLX Length = 65 Score = 41.1 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 4/59 (6%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVI----HGRARWLYRDHCEFKNKLLSRA 64 ++ K ++ TG +Y I G P +K + WL D + N + Sbjct: 6 ILRKKEVLHLTGISSATLYRLISKGFFPLSKRLTGDNGRAVGWLESDINNWVNSRMQAG 64 >UniRef50_A3NM12 Prophage CP4-57 regulatory protein (AlpA) n=10 Tax=Burkholderiaceae RepID=A3NM12_BURP6 Length = 78 Score = 40.8 bits (94), Expect = 0.012, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Query: 11 VDLKFIMADTGFGKTFIYDRIKSGDLPKAKVI-HGRARWLYRDHCEF 56 + +K I+ G G++ +Y I +G PK + GR WL D + Sbjct: 5 LRMKDIVDKVGLGQSTLYRMIAAGTFPKPFELVPGRTAWLEEDIDAW 51 >UniRef50_A2PQ69 Prophage CP4-57 regulatory protein (AlpA) n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PQ69_VIBCH Length = 129 Score = 40.8 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 1/50 (2%) Query: 9 SLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIH-GRARWLYRDHCEFK 57 L+ K + TG + +Y I G P+ I + W+ + + Sbjct: 2 QLIRRKELSELTGISRAHLYLLIGEGKFPRQIHIGKRASAWIVEEVQAWV 51 >UniRef50_C6XEE2 Phage transcriptional regulator, AlpA n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6XEE2_METSD Length = 82 Score = 40.8 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLL 61 D L+ L + G G++ IY+RIK+ P WL + ++ + L Sbjct: 15 DRLIGLAEVSNRVGKGRSTIYERIKNKTFPAPVEPG---LWLESEIDQYIDDLR 65 >UniRef50_Q0C1G9 Prophage CP4-57 regulatory protein AlpA family protein n=1 Tax=Hyphomonas neptunium ATCC 15444 RepID=Q0C1G9_HYPNA Length = 61 Score = 40.8 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 11/57 (19%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKS--GDLPKAKVIHGRARWLYRDHCEFKNKLLSRA 64 + L+ ++ ++ +Y+ IK P I R+ W+ + + +LS A Sbjct: 3 FLSLRDVLDRLTISRSLLYELIKDPVQPFPAPIHIGRRSVWVENEVESYMRAVLSTA 59 >UniRef50_UPI0001AF502E phage transcriptional regulator, AlpA n=1 Tax=Pseudomonas syringae pv. oryzae str. 1_6 RepID=UPI0001AF502E Length = 80 Score = 40.8 bits (94), Expect = 0.014, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLLSRA 64 ++ L + GF + IY + G P++ + RA W ++ + A Sbjct: 14 ILRLPEVQVRIGFKRAHIYSLMSQGLFPRSVPLGPRAVGWDSLAVEKWIEDRIYDA 69 >UniRef50_D0J722 Possible bacteriophage transcriptional regulator n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J722_COMTE Length = 65 Score = 40.8 bits (94), Expect = 0.015, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 D L+ +K I ++ +Y I++G LP+ I ARW +KL Sbjct: 11 DRLLKVKDIQEILQLSRSAVYAAIRAGLLPRPIKIGKSARWKASVIAGMVDKL 63 >UniRef50_A9FZ14 Putative uncharacterized protein n=1 Tax=Phaeobacter gallaeciensis BS107 RepID=A9FZ14_9RHOB Length = 64 Score = 40.4 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 10/46 (21%), Positives = 18/46 (39%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDH 53 D L+ ++ + + IY IK P A+ +RW + Sbjct: 9 DVLLPIQAVCEIVARSRASIYRDIKLKTFPAAQKQGRSSRWRRSEI 54 >UniRef50_B1Y1X4 Phage transcriptional regulator, AlpA n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y1X4_LEPCP Length = 75 Score = 40.4 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%) Query: 9 SLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEF 56 + + + TG G++ IY + P + RA W D + Sbjct: 18 VFLRIGAVTKLTGLGRSTIYRLMAEAKFPTPVRLSSRAIAWRRADLDRW 66 >UniRef50_B2FIP8 Putative phage regulatory protein n=1 Tax=Stenotrophomonas maltophilia K279a RepID=B2FIP8_STRMK Length = 53 Score = 40.4 bits (93), Expect = 0.017, Method: Composition-based stats. Identities = 6/32 (18%), Positives = 9/32 (28%) Query: 31 IKSGDLPKAKVIHGRARWLYRDHCEFKNKLLS 62 + G P + G W D + S Sbjct: 1 MDKGTFPPRHKVGGGTGWYQSDIKRWIRARRS 32 >UniRef50_D2LHF0 Phage transcriptional regulator, AlpA n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LHF0_RHOVA Length = 80 Score = 40.4 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 9 SLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGR-ARWLYRDHCEFKNKLLS 62 L+ + A G + +Y ++ +G P+ + + + W + ++ Sbjct: 3 VLLRRDDVRARLGCSVSNLYSQMAAGMFPRPIKLGPKYSAWPEYEVEAIIKSRVA 57 >UniRef50_D0Z915 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0Z915_EDWTE Length = 64 Score = 40.0 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 4/57 (7%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVI----HGRARWLYRDHCEFKNKL 60 + ++ K ++ G +Y I G P + WL D + + Sbjct: 4 ERILRKKEVLQRIGISNASLYRLIAKGLFPTGIKLTGQEGRAVGWLSSDIDNWISNR 60 >UniRef50_B8DSS4 Putative uncharacterized protein n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=B8DSS4_BIFA0 Length = 68 Score = 40.0 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 2/61 (3%) Query: 2 QHELQPDSLVDLKFIMADTGFGKTFIY--DRIKSGDLPKAKVIHGRARWLYRDHCEFKNK 59 + L+D+K + G T IY R ++P A I + W +D ++ + Sbjct: 5 TPKTTTRELLDIKQVAERIGMSATTIYHKRRTHKDEVPPAIRIGRKLFWRPKDVDQWIDN 64 Query: 60 L 60 Sbjct: 65 R 65 >UniRef50_C5V761 Phage transcriptional regulator, AlpA n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V761_9PROT Length = 57 Score = 40.0 bits (92), Expect = 0.027, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIH-GRARWLYRDHCEFKNKL 60 L ++ ++A K+ +Y IK G P+ I R WL D F L Sbjct: 2 LWNIHQVVAAVTLSKSTVYRLIKDGKFPQPVRISYKRVGWLKADIDSFVASL 53 >UniRef50_A9D684 Phage transcriptional regulator, AlpA n=2 Tax=Alteromonadales RepID=A9D684_9GAMM Length = 80 Score = 40.0 bits (92), Expect = 0.027, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLLSR 63 ++ ++ +TG K +Y+RIK G P + RA ++ + N +++ Sbjct: 8 IIRKPDVINETGLSKLTLYNRIKDGLFPPPISLGARAVGFVKSECEAVINAMIAE 62 >UniRef50_D0KY14 Phage transcriptional regulator, AlpA n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KY14_HALNC Length = 56 Score = 39.6 bits (91), Expect = 0.027, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIH-GRARWLYRDHCEFKNKLL 61 DS++ L ++ TG ++ IY + +G P+ + W + ++ + Sbjct: 2 DSILRLHDVLRITGASRSSIYLWVSAGIFPQPVKLGVRAVGWRRSEVQQWLDDRR 56 >UniRef50_C1SNK6 DNA-binding protein, excisionase family n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SNK6_9BACT Length = 221 Score = 39.6 bits (91), Expect = 0.027, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 21/60 (35%) Query: 6 QPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKLLSRAN 65 + +K + G + +Y I +P I G+ R+ ++ + + N Sbjct: 1 MDTLFLTVKDMSVKLGVSEKTVYRMINDNKIPYGIKIGGQWRFNREKIEKWVSGQSTEDN 60 >UniRef50_UPI00016ADB9E regulatory protein, AlpA family n=3 Tax=pseudomallei group RepID=UPI00016ADB9E Length = 63 Score = 39.6 bits (91), Expect = 0.028, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 1/44 (2%) Query: 20 TGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLLS 62 G KT +Y I+ G P + R+ W D + S Sbjct: 15 VGVKKTTLYRWIREGKFPAPVQLGARSVGWRATDVQHWVESRQS 58 >UniRef50_Q3SF41 Possible Transcriptional Regulator n=2 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SF41_THIDA Length = 98 Score = 39.6 bits (91), Expect = 0.028, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 10/71 (14%) Query: 4 ELQPDSLVDLKFIMADTGFGKTFIYDRIKSG---------DLPKAKVIHGRAR-WLYRDH 53 E + ++ K + A TG ++ IY R++ PK + +A W+ + Sbjct: 25 EAKETRILRRKQVEARTGLSRSSIYARLRQNPKRPGDYDPTFPKPVSVGAKAVGWIEAEI 84 Query: 54 CEFKNKLLSRA 64 + + ++ Sbjct: 85 EAWLTAQIQKS 95 >UniRef50_A1SV81 Phage transcriptional regulator, AlpA n=4 Tax=Gammaproteobacteria RepID=A1SV81_PSYIN Length = 79 Score = 39.6 bits (91), Expect = 0.028, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 4/58 (6%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVI----HGRARWLYRDHCEFKNKLLSR 63 ++ L + TG + IY ++ + D P + + W+ + ++ N+ + Sbjct: 8 IIRLPEVKDMTGLARATIYKKMATDDFPMSINLSSGCGRAVGWVEIEILDWINERIEE 65 >UniRef50_D0J4D1 Phage transcriptional regulator, AlpA n=1 Tax=Comamonas testosteroni CNB-2 RepID=D0J4D1_COMTE Length = 283 Score = 39.6 bits (91), Expect = 0.029, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNK 59 ++ + ++ TG ++ +Y ++ P + RA W D + Sbjct: 13 VIPMDEVLTRTGLSRSMLYKLLRKDKFPHPTPMSNRAIGWFETDVENWLQA 63 >UniRef50_B1JDS6 Phage transcriptional regulator, AlpA n=2 Tax=Pseudomonadaceae RepID=B1JDS6_PSEPW Length = 74 Score = 39.6 bits (91), Expect = 0.030, Method: Composition-based stats. Identities = 9/58 (15%), Positives = 27/58 (46%), Gaps = 1/58 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLSRANG 66 + + + A TG ++ IY R+ + P+ + + W+ + + ++ ++ + G Sbjct: 14 FIKRQDVEAITGLSRSEIYRRMAAQTFPQQIALSPKCVVWVEAEILTWCDERIAESRG 71 >UniRef50_A1SRJ5 Phage transcriptional regulator, AlpA n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SRJ5_PSYIN Length = 74 Score = 39.6 bits (91), Expect = 0.034, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 22/53 (41%), Gaps = 1/53 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEFKNKLL 61 ++ L ++ TG + +Y +K G P I R+ W+ + + L Sbjct: 3 ILRLADVVKKTGLSRAMLYKLMKDGRFPLNLHISMRSVGWVDSEVEIWMENRL 55 >UniRef50_A0K329 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia cenocepacia HI2424 RepID=A0K329_BURCH Length = 380 Score = 39.6 bits (91), Expect = 0.034, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 10/60 (16%) Query: 13 LKFIMADTGFGKTFIYDRIKSG------DLPKAKVIH----GRARWLYRDHCEFKNKLLS 62 LK +M TG G++ IY+R+ G P++ + G W + + Sbjct: 317 LKRVMELTGLGRSSIYNRMDEGSKHYDSTFPRSFKLGSGEAGATGWDEDAVKSWVAAQAA 376 >UniRef50_Q6AR72 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AR72_DESPS Length = 90 Score = 39.2 bits (90), Expect = 0.036, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%) Query: 7 PDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKL 60 P+ + L + TG+ IY ++ + PKA+ + GRA W +D F Sbjct: 26 PERRIRLPEVKTLTGYSTASIYAKMANQSFPKAQKMGGRAVAWRLQDILAFLEGR 80 >UniRef50_A1TJN4 Phage transcriptional regulator, AlpA n=28 Tax=Proteobacteria RepID=A1TJN4_ACIAC Length = 75 Score = 39.2 bits (90), Expect = 0.042, Method: Composition-based stats. Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 1/52 (1%) Query: 10 LVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIH-GRARWLYRDHCEFKNKL 60 ++ + TGF + IY +K P+ + W + ++ + Sbjct: 21 VLRRPLVEQRTGFKRAHIYSLMKEKKFPQRVRLGVRAVGWYEDEIDQWLAQR 72 >UniRef50_Q28S53 Phage transcriptional regulator, AlpA n=23 Tax=Alphaproteobacteria RepID=Q28S53_JANSC Length = 76 Score = 38.8 bits (89), Expect = 0.049, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 23/52 (44%), Gaps = 1/52 (1%) Query: 7 PDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIH-GRARWLYRDHCEFK 57 PD +V L ++ TG ++ +Y +I G P I A W + E+ Sbjct: 4 PDRIVRLTTVLDRTGLSRSTLYRKIAEGTFPAQLRISVHGAGWRESEIGEWI 55 >UniRef50_A9FCF4 DNA-binding protein, putative n=6 Tax=Rhodobacteraceae RepID=A9FCF4_9RHOB Length = 65 Score = 38.8 bits (89), Expect = 0.052, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 1/49 (2%) Query: 13 LKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNKL 60 + TG +T IY + G+ P+ + +A W E+ + Sbjct: 14 RPEVEELTGLSRTTIYAMMSRGEFPRPVRMTRKAVAWPESAIAEWLSSR 62 >UniRef50_A3JW32 Prophage CP4-57 regulatory n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JW32_9RHOB Length = 65 Score = 38.4 bits (88), Expect = 0.070, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 29/56 (51%), Gaps = 3/56 (5%) Query: 10 LVDLKFIMADTGFGKTFIYDRI--KSGDLPKAKVIHGRA-RWLYRDHCEFKNKLLS 62 + + ++A TG K+ IY ++ ++ D P+ + + RA W+ + E+ ++ Sbjct: 9 FMRISELVATTGIPKSSIYQKLNEENSDFPRPRRLGPRAVAWMSDEVYEWMRSRVA 64 >UniRef50_A1W718 Phage transcriptional regulator, AlpA n=1 Tax=Acidovorax sp. JS42 RepID=A1W718_ACISJ Length = 143 Score = 38.4 bits (88), Expect = 0.071, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 1/51 (1%) Query: 9 SLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKN 58 + + +M T +Y R+ G P + GRA W + Sbjct: 32 AFFRIAEVMRITVLSSATVYRRLADGIFPPPVHLGGRACGWTPVALQAWIE 82 >UniRef50_Q0A9S3 Phage transcriptional regulator, AlpA n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A9S3_ALHEH Length = 75 Score = 38.4 bits (88), Expect = 0.072, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 1/51 (1%) Query: 7 PDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGR-ARWLYRDHCEF 56 P L+ + ++ TG ++ I+ R + G P + R W D E+ Sbjct: 10 PSRLMKKREVIDVTGLSESTIWRREQEGRFPPRIRLGQRMTVWRESDVHEW 60 >UniRef50_C7I2T3 Phage transcriptional regulator, AlpA n=1 Tax=Thiomonas intermedia K12 RepID=C7I2T3_THIIN Length = 72 Score = 38.4 bits (88), Expect = 0.072, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Query: 13 LKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGR-ARWLYRDHCEFKNKL 60 L F++ G ++ +Y I+ G+ P + R + W + E+ + Sbjct: 11 LPFLLETFGLKRSTVYFWIRKGNFPPPYKVGDRCSLWDIAEVEEYLRRR 59 >UniRef50_B2JS19 Phage transcriptional regulator, AlpA n=1 Tax=Burkholderia phymatum STM815 RepID=B2JS19_BURP8 Length = 96 Score = 38.4 bits (88), Expect = 0.079, Method: Composition-based stats. Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Query: 11 VDLKFIMADTGFGKTFIYDRIKSGDLPKAKVI-HGRARWLYRDHCEFKNKL 60 + LK + ++ + ++ P+ +++ R WL + + N Sbjct: 30 LSLKEVAQALSLSQSTVQQLVREKRFPEPRLLSGRRVGWLTHEVQNWANAR 80 >UniRef50_A6V7L4 Putative helicase n=1 Tax=Pseudomonas aeruginosa PA7 RepID=A6V7L4_PSEA7 Length = 676 Score = 38.1 bits (87), Expect = 0.083, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKN 58 D + L+ G GKT +Y + G +P A+ I + + ++ Sbjct: 5 DGWLSLEETATYLGMGKTALYAMAREGRIP-ARKIGKKWIFEKSGLDQWVR 54 >UniRef50_A6B241 Conserved domain protein n=2 Tax=Vibrio parahaemolyticus RepID=A6B241_VIBPA Length = 79 Score = 38.1 bits (87), Expect = 0.087, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 5 LQPDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIH-GRARWLYRDHCEFKNKLLS 62 + + + + ++ T + + IY +KSG+ P + + R W + + + S Sbjct: 1 MANERYMKIGEVLERTSYSRAQIYRLMKSGEFPSSYRLSKNRVAWKESEVDAWVEERQS 59 >UniRef50_B5K0V3 Transcriptional regulator, AlpA family n=1 Tax=Octadecabacter antarcticus 238 RepID=B5K0V3_9RHOB Length = 66 Score = 38.1 bits (87), Expect = 0.089, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 18/54 (33%) Query: 7 PDSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRARWLYRDHCEFKNKL 60 + L+ + G + F+ +G PK I AR+ D + Sbjct: 8 DERLLSRDEVEERFGVTRRFLEQSAMNGKGPKLIKIGRSARYRPSDVRAWIAAH 61 >UniRef50_A4JR07 Phage transcriptional regulator, AlpA n=6 Tax=Burkholderia RepID=A4JR07_BURVG Length = 83 Score = 38.1 bits (87), Expect = 0.090, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%) Query: 9 SLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRAR-WLYRDHCEF 56 +++ + + TG ++ IY R++ G P A + GR W D +F Sbjct: 10 TILRRRQVEQCTGLSRSTIYKRMQEGTFPPAIALGGRMVGWRAADIEQF 58 >UniRef50_Q1NGR7 Putative uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGR7_9SPHN Length = 65 Score = 38.1 bits (87), Expect = 0.093, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%) Query: 8 DSLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA-RWLYRDHCEFKNK 59 + + L+ ++A TG K IY I G P + I RA W + Sbjct: 6 EQFLRLRAVIAKTGKPKASIYRDIHLGTFPAPEKIGARAVAWRLSRILRWMQA 58 >UniRef50_Q8DF51 Predicted phage-specific transcriptional regulator n=1 Tax=Vibrio vulnificus RepID=Q8DF51_VIBVU Length = 86 Score = 38.1 bits (87), Expect = 0.094, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 18/38 (47%) Query: 9 SLVDLKFIMADTGFGKTFIYDRIKSGDLPKAKVIHGRA 46 + LK ++ KT IYD+IK G+ P + G Sbjct: 5 QFMSLKEVIELVTLKKTAIYDKIKKGEFPPQIRMGGNT 42 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.319 0.140 0.398 Lambda K H 0.267 0.0429 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 414,266,446 Number of Sequences: 3077464 Number of extensions: 13171398 Number of successful extensions: 40117 Number of sequences better than 1.0e-01: 204 Number of HSP's better than 0.1 without gapping: 126 Number of HSP's successfully gapped in prelim test: 106 Number of HSP's that attempted gapping in prelim test: 39882 Number of HSP's gapped (non-prelim): 234 length of query: 66 length of database: 1,040,396,356 effective HSP length: 38 effective length of query: 28 effective length of database: 923,452,724 effective search space: 25856676272 effective search space used: 25856676272 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.2 bits) S2: 87 (38.1 bits)