HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/3380201c221967c7/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/3380201c221967c7/query.hhm DATE Thu Jan 19 05:13:46 2012 LENG 105 match states, 105 columns in multiple alignment FILT 53 out of 55 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 4.4 EVD 0.4272 0.2499 SEQ >ss_pred CEEEECCCCCEEEECCCCCCEEEEEECCEECCCHHHHHHCCCCCCCCCCCCEEEEEECCCCCCEEEECCHHHEEECCCCCCCCCCCHHHHHHHHHHHCCC CCCCC >ss_conf 9012413341544301574189991002471887799861888521279847999967998733775136453423578822687489999999741045 01149 >Consensus xxxxkfxIGqivrHkxxxYxgVIxgwDpxxxxxxeWxxxxxxxxxxxxQPfYxVLvxxxxxxxxxxYvaEenLxxxxxxxxixHPxixxxFxxfxxxxxx PxLrx >batch____ MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDEHPEQPSMDELAQTIRKQLQA PRLRN >UniRef50_A8TX54(44-143:149) Putative uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TX54_9PROT E=2e-24 s/c=1.13 id=27% cov=90% IVAPNFSLGAIVRHRLHDFRGVVFDIDAEFANTEEWYESIPEHmRPRRDQPFYHLLAENPESYYV-AYVSEQNLVEDATNGPVDHPKVPEFFDRL----- ------ >UniRef50_A3WMA3(9-100:107) Putative uncharacterized protein n=1 Tax=Idiomarina baltica OS145 RepID=A3WMA3_9GAMM E=2e-21 s/c=1.12 id=31% cov=89% VVRASFNLGQPIKHCLYGYEGVIVDVDAVFSLSDEWYQQRVLSGADKQQPWYLILVKNSS---IQTYVAESCLIALADRTTVN--------QSLLRQISA PAL-- >UniRef50_UPI000187C7D3(86-156:170) hypothetical protein MPER_02978 n=1 Tax=Moniliophthora perniciosa FA553 RepID=UPI000187C7D3 E=3e-07 s/c=0.80 id=38% cov=35% -------VGLLFRHHRYRYVGFIFGWDPVCAASEEWKKELGVN--------------------------------------------------------- ----- >UniRef50_B6KTR0(4141-4240:4302) Ubiquitin carboxyl-terminal hydrolase, putative n=3 Tax=Toxoplasma gondii RepID=B6KTR0_TOXGO E=2e-17 s/c=0.90 id=23% cov=67% -----FRVGRLVRHRWSKYTAVVLSWDRSCEAPPDWTAKVYEHYPesSSHKPHYLLLVDQaavrEPQLPLFAYVPEVALE-------------------- ----------- >UniRef50_B3S546(486-585:591) Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S546_TRIAD E=4e-24 s/c=1.12 id=22% cov=91% -----YKVGMMMQHRRYNYTCVIYGWDYECRMTQAWVTQMGVDMLPNgtKQPFYNVLVEDGS----QRYAAQENLRQiEEQIEPCPNAEVGKFFQSFTGT NYVPndQLR- >UniRef50_C3ZNV4(114-220:226) Putative uncharacterized protein n=2 Tax=Chordata RepID=C3ZNV4_BRAFL E=3e-23 s/c=1.02 id=23% cov=98% -VHVKYRVGQTIRHKRYGYRGVIIGWDVIAKAPPNWLLANHPADKPywKKTPNYSVLVDErDRPDGQRTYVVEENIQVV-YNMKIRHPDIEEYFDKFdgA QYLMRPWLR- >UniRef50_Q1HQ58(472-567:606) F-box only protein 21 n=1 Tax=Bombyx mori RepID=Q1HQ58_BOMMO E=9e-17 s/c=0.91 id=19% cov=65% ----KYAVGMICTHKKHKYTGIIRGWDLIWAADwKEHGEALNRLEFGHNQPFYYLIIANQSS----RYVAQENLSA------------------------ ------ >UniRef50_D1I1J1(210-318:340) Whole genome shotgun sequence of line PN40024, scaffold_11.assembly12x (Fragment) n=19 Tax=Embryophyta RepID=D1I1J1_VITVI E=3e-21 s/c=0.94 id=26% cov=86% -----FRLGQKVRHKVFGYSAVICGMDPVCCESSSWRESAHVDKLTRgsNQPFYQVLVDvHVDPNLLVAYVPEENLLVPDGPRPnkgrFDHPYLSFLFYG M----------- >UniRef50_A0P9L1(119-220:226) Similar to Tetraodon protein product CAG00085 n=2 Tax=Clupeocephala RepID=A0P9L1_ONCMY E=6e-18 s/c=0.90 id=21% cov=92% -------VGDVVMERNGHMIGVIVSWDPELRAPPEWMSRLHPNEEvnAENTPHYKVLFSGpGPSSLLVGYLPQTRLERVTGTRP-EIPTLEQYFTHFdgE RFIMQPWLQ- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * 3396 * 2665 675 * * * * * * 3049 * * 1 0 * * * * * * 2810 0 0 I 2 3880 * * * * * * 2168 * 2277 * * * 4022 4145 * 3480 1759 * * 2 0 * * * * * * 3487 0 0 A 3 3407 * * 2932 * * 4019 2960 3624 * * * * 4439 1975 2797 4085 * * * 3 0 * * * * * * 3792 0 0 S 4 996 4299 * * * * * * * * * * 2809 * * 4399 * 1956 * * 4 0 * * * * * * 3863 0 0 K 5 * * * * * * 4963 * 787 * * 5388 * 2718 2513 4737 * * * * 5 0 * * * * * * 4208 0 0 F 6 * * * * 575 * * * * * * * * * * * * * * 1605 6 0 * * * * * * 4493 0 0 G 7 3479 * * * 3380 3096 4972 * 3147 5197 * 3067 * 6156 2279 2596 5601 * * * 7 0 * * * * * * 4493 0 0 I 8 * * * * * * * 1193 * 3109 * * * * * * * 1163 * * 8 0 * * * * * * 4660 0 0 G 9 * * * * * 0 * * * * * * * * * * * * * * 9 0 * * * * * * 4660 0 0 Q 10 4229 * 3117 4516 * * * * * 3912 2858 5413 * 1054 5373 * 4206 * * * 10 0 * * * * * * 4660 0 0 Q 11 4194 * * * * * * 1745 5339 2724 5789 * 5283 4123 5595 * 5851 1592 * * 11 0 * * * * * * 4660 0 0 V 12 * 4681 * * 3124 * * 2512 * 5567 2925 * * * * * 5025 1036 * * 12 0 * * * * * * 4660 0 0 R 13 * 5837 * 5844 * * * 4033 2538 4581 4177 5521 * 4263 1038 * 3756 * * * 13 0 * * * * * * 4660 0 0 H 14 * * * 4177 * * 82 * * * * * * * * * * * * * 14 0 * * * * * * 4660 0 0 S 15 * 5283 * * * * 6008 * 1455 3268 * 5844 * 5345 1467 4102 5151 * * * 15 0 * * * * * * 4660 0 0 L 16 * * 5375 5701 * * 4501 4199 2765 2350 5452 5204 * 4717 2159 * 3747 4766 3873 5413 16 0 * * * * * * 4660 0 0 L 17 * * 5707 * 3083 4189 4245 * * 3386 * 5386 * * * 3315 * * 3260 1215 17 0 * * * * * * 4667 0 0 G 18 5386 * 6121 4453 * 1440 3095 * 4016 * * 2608 3802 * 3502 4485 * * * * 18 0 * * * * * * 4667 0 0 Y 19 * * * * 2112 * * * * * 4189 * * * * * * * * 486 19 0 * * * * * * 4667 0 0 L 20 5438 * * 3877 * 6133 4948 5217 5195 3761 * 4115 4983 4548 1526 4557 3048 3769 * 5777 20 0 * * * * * * 4667 0 0 G 21 2678 2547 * * * 572 * * * * * * * * * * * * * * 21 0 * * * * * * 4667 0 0 V 22 5360 4931 * * 6023 * * 2725 * * * * * * * 5438 * 409 * * 22 0 * * * * * * 4667 0 0 V 23 * * * * * * * 649 * * * * * * * * * 1465 * * 23 0 * * * * * * 4667 0 0 V 24 * 4473 * * 2779 * * 2606 * 3657 5386 * * * 3870 5195 3934 1860 6133 3459 24 0 * * * * * * 4667 0 0 D 25 * 5438 1662 * * 838 * * * * * * * * * 3302 * * * * 25 0 * * * * * * 4667 0 0 I 26 4886 * * * * * * 3618 * * 5350 * * * * * * 2197 639 * 26 0 * * * * * * 4667 0 0 D 27 * * 80 * * * 4941 * * * * * * * * * 5545 * * * 27 0 * * * * * * 4668 0 0 P 28 3749 * * * * 5979 5389 * * 4804 5613 5062 949 * 5374 4840 5930 3274 4479 4107 28 0 * * * * * * 4664 0 0 V 29 5855 4647 * 2343 6137 3992 * 4238 3123 4938 5036 * * 4785 4805 3888 4895 2092 * 5062 29 0 * * * * * * 4664 0 0 Y 30 4250 1260 * * 2096 * * * * 3401 * * * * * * 5194 5243 4804 3159 30 0 * * * * * * 4664 0 0 S 31 2565 4471 3227 3814 * 6122 5402 5445 3596 * 5064 4324 * 3452 3282 3182 4863 * 4937 6243 31 0 * * * * * * 4664 0 0 L 32 1223 * * 4471 * 3732 5855 6393 5604 3327 2809 3196 * 5855 4937 * * * * * 32 0 * * * * * * 4664 0 0 S 33 * * 4289 4983 * 3301 * * * * * 4910 1619 * * 1574 3046 * * * 33 170 4804 3726 0 * * * 4664 1000 0 E 34 * * 2521 1469 * 4856 5969 * 3727 * * * 3450 3883 5918 4267 3672 4954 * * 34 0 * * * * * 0 4536 0 1817 P 35 3452 * 3547 1112 5499 * * * * 5121 * 4511 4018 3435 3904 4477 * * * * 35 0 * * * * 1229 802 4536 0 1817 S 36 * * * * * * 4764 * * * * * * * * 5238 4930 * 201 4882 36 26 * 5829 * * * 0 4598 0 1247 P 37 5668 * * * * 4745 * 1799 5965 4120 3070 4847 4031 4930 4365 * 5243 5752 4087 2458 37 0 * * * * * 0 4578 0 1673 D 38 3768 * 2928 2108 * * * 5191 4756 3688 * 3978 4847 3261 3407 4413 4757 5385 * 5919 38 0 * * * * 0 * 4578 0 1673 E 39 2362 * * 3011 * * 4864 * 3585 5075 * 3368 * 2362 3306 3214 5851 * 5907 * 39 0 * * * * * * 4651 0 0 L 40 3693 * * * 4849 * 5422 2791 5805 3005 1696 3042 * * 5301 * * 3030 * * 40 0 * * * * * * 4651 0 0 A 41 3182 * 5391 4542 * 2279 3204 * 4849 * * 3397 3417 4166 4191 4950 * 5301 * 3094 41 43 5073 * 1585 585 * * 4651 1000 0 V 42 6365 5885 * 2879 * 4950 * 2898 4315 4248 * * 2875 4482 4728 4849 4620 1881 * * 42 0 * * * * * * 4651 0 0 N 43 4175 * 1919 4479 * 2805 3400 * 4482 4728 * 2821 3961 * 4948 3699 * * * * 43 219 2829 * 341 2249 * * 4651 2322 0 D 44 5387 * 2726 2541 * 5280 * * 3853 5816 5802 3659 4337 4684 2351 3493 * * * 3832 44 32 5514 * 1000 1000 * * 4649 1000 0 E 45 5280 5612 4340 3009 3345 * * * 3252 2052 * * 2276 5514 * 5243 4939 5387 * 5353 45 279 2834 4808 1000 1000 * * 4649 2689 0 L 46 2728 * 5237 * * 2288 5668 * 5528 3714 * * 1788 * 4017 3660 4256 5836 * * 46 283 2488 * 1636 560 0 * 4579 2676 1000 R 47 3839 * * 3399 * * 3860 * 2159 5192 5301 4010 * * 1435 5321 4926 * * * 47 188 3035 * 1000 1000 * * 4649 2325 0 A 48 5215 * 2058 6241 * 5612 3466 * 3470 * * 1878 5881 4552 4360 3212 5049 * * * 48 0 * * * * * * 4649 0 0 A 49 5215 * * 4939 * * * * 3510 * 5568 4926 * 579 5876 4806 3712 * * * 49 64 4527 * 1258 781 * * 4649 1636 0 P 50 4830 * * * * * * * * * * * 157 * * 3878 * * * * 50 0 * * * * * * 4649 0 0 W 51 * * * * 856 * 2756 * * * * 4162 * * * 5192 * * 2425 5049 51 0 * * * * * * 4649 0 0 Y 52 * * * * 5301 * * * * * * * * * * * * * * 37 52 0 * * * * * * 4649 0 0 H 53 5568 * * * * * 1347 * 3739 3139 * 2650 * 5336 3400 4487 * * 4808 4712 53 0 * * * * * * 4649 0 0 V 54 * * * * * * * 3183 * 1804 5190 * * * * * * 796 * * 54 0 * * * * * * 4712 0 0 V 55 * * * * 3274 * * 4316 * 343 * * * * * * * 4101 * * 55 0 * * * * * * 4712 0 0 M 56 2377 * * * 3916 4735 * 4927 * * 4114 * * * * 5059 5013 857 * * 56 69 5218 5678 2322 322 * * 4694 1000 0 E 57 3130 * 2051 1807 * * 3669 * 5170 5178 5462 4590 * 4810 * 3394 * 5072 * * 57 42 5123 * 0 * * 0 4619 1000 1000 D 58 * * 1575 3670 * 3069 5123 * 5252 * * 2052 * 4112 * * 3554 * * 5179 58 295 2435 * 495 1785 * 0 4619 2339 1000 D 59 3951 * 1970 3069 5179 2266 * * 4772 * * * 5837 3854 5582 2723 * 5070 * * 59 51 4856 * 1585 585 0 * 4565 1000 1000 N 60 * * 2624 3161 * 5009 4414 * * * * 4154 3419 4844 2994 1727 4794 * * * 60 251 * 2646 * * * * 4567 0 0 G 61 * 3770 * * * 2864 4900 * * 4874 * 3100 3356 3528 4536 1860 3291 * * * 61 347 * 2224 * * * 0 4431 0 2627 L 62 * * 4655 2546 * 3806 5498 4609 * 2383 * 4514 * 3495 * 2252 4645 4173 * 5330 62 150 * 3341 * * * 0 4097 0 3256 P 63 * * * * 3648 3467 * * * 2644 * 4013 1784 * * * * 3380 * 2175 63 0 * * * * 1861 464 3918 0 3345 V 64 * * * * 4243 * 3922 2277 * 2233 * 4204 4672 3177 * * * 2130 * 5075 64 477 4243 2127 0 * 1305 748 4063 1000 2967 H 65 * * * 3608 4186 * 2912 2393 * * 4823 * * 3057 4755 3643 4179 2237 * * 65 70 * 4407 * * 96 3956 4263 0 2991 T 66 1586 * * * * 3791 * * * * * * * * 2034 * 1666 * * 4813 66 43 5078 * 0 * 0 * 4508 1000 1602 Y 67 * * * * * * * * * * * * * * * * * * * 0 67 0 * * * * * * 4577 0 0 L 68 2040 5827 * * * * * * * 2912 * * * * * * * 722 * * 68 0 * * * * * * 4577 0 0 A 69 931 * * 4718 * * * * * * * * 2409 * * 2433 * 3969 * * 69 0 * * * * * * 4577 0 0 E 70 * * * 540 * * * * * * * * * 1818 5140 * * * * * 70 0 * * * * * * 4577 0 0 A 71 3531 4718 4765 1140 * 5193 * 5508 * * * * * 2880 4501 4302 3849 4814 * * 71 0 * * * * * * 4577 0 0 Q 72 4814 5083 * * * * 4765 * * 5147 4718 672 * 3336 4883 5560 * 4312 * * 72 0 * * * * * * 4577 0 0 L 73 * * * * * * * 3276 * 157 * * * * * * * * * * 73 0 * * * * * * 4591 0 0 S 74 * * 5488 1191 * * * 3584 5111 3923 4829 * * 5155 4005 3909 4267 3089 * * 74 0 * * * * * * 4591 0 0 S 75 2750 * * 5629 * * 3701 4202 4810 4398 * * 2773 4305 3710 3861 5121 2167 * 5423 75 90 5190 4909 0 * * * 4591 1000 0 E 76 5321 * 1663 2923 * * 4060 3189 * 3782 * 5334 3894 * * 4333 5012 3155 * * 76 52 * 4826 * * 0 * 4510 0 1000 L 77 3757 * 3146 2822 5185 5273 * * 3569 2730 4120 * 5297 4806 * 3865 2551 5308 * * 77 49 4906 * 4087 87 0 * 4463 1000 1000 Q 78 5306 * 4037 4594 * 1752 4823 * * 4695 * 3966 * 3851 5011 2163 3590 * * 5018 78 0 * * * * * * 4488 0 0 D 79 5917 * 3674 5218 * 2831 3927 5160 * * 4581 3289 2585 5425 4901 4695 2283 * * 4945 79 46 * 4992 * * * * 4488 0 0 E 80 * 4805 4050 1488 * 4648 * * 5484 3539 4051 * * 3337 2650 * 4014 5748 * * 80 60 * 4622 * * 0 * 4484 0 1000 H 81 2751 * * 3513 5378 * 3604 * 3277 4287 * * 1399 5150 * * 4828 4869 5240 * 81 252 4790 3013 2000 415 0 * 4424 1000 1000 P 82 * 4976 * * 4695 * * 1106 * 3062 * 5209 4087 * * * * 1946 * * 82 58 * 4674 * * 0 * 4241 0 1879 E 83 * * 2247 2392 4970 5295 * 4809 * * * 2957 4294 3404 2716 4511 4817 * * * 83 49 * 4894 * * 0 * 4511 0 1000 Q 84 * * * * * * 321 3591 * * * 3759 * 4558 * * * * * * 84 0 * * * * * 0 4435 0 1000 P 85 3512 * 4968 4576 * * * * * * * * 254 * * * * * * * 85 0 * * * * * 0 4480 0 1000 S 86 4351 * 2300 2139 * 5823 * * 4085 5085 4997 4496 * 5485 4146 3287 3559 * * 3773 86 0 * * * * * 0 4480 0 1000 M 87 * * * * * * * 1648 * 1450 4541 * * * * * * 1879 * * 87 0 * * * * * 0 4480 0 1000 D 88 4597 * 2854 2338 * 1714 * 4360 * * * 4376 3806 * 5336 3552 * * * 4664 88 0 * * * * * 0 4251 0 1000 E 89 * * 3150 1618 4608 5407 * 4664 2908 4767 4973 4364 * 4489 2931 * * * * 4982 89 0 * * * * * 0 4251 0 1000 L 90 * * * * 2638 * 4612 * * 1784 4393 * * * * * * 5496 5345 1273 90 0 * * * * * 0 4262 0 1000 A 91 3321 * * * 152 * * * * * * * * * * * * * * * 91 0 * * * * 0 * 4278 0 1000 Q 92 * * 2359 1980 * * * * 5125 4601 * 4637 * 2249 * 3408 3412 * * 4541 92 0 * * * * * * 4340 0 0 T 93 * * * 2768 * 2338 3301 * 4493 4277 * * * 4563 3942 2037 4212 4238 * * 93 0 * * * * * * 4356 0 0 I 94 * * * * 985 * * 2583 * 2486 4188 * * * * * * * * 3404 94 570 1614 * 1000 1000 * * 4300 1975 0 R 95 3680 * * 2683 * * * * 2750 3626 * * * 3616 2664 2714 2786 * * * 95 0 * * * * * * 3849 0 0 K 96 * * * * * 2371 * * 3223 * * * * 3324 1004 3305 * * * * 96 155 * 3298 * * * * 3547 0 0 Q 97 * * * * 2265 * * * 3190 * * 3298 * 1912 * * 3275 * * 2239 97 0 * * * * * 0 3428 0 1000 L 98 * * * * * * * 1217 * 1968 * 3275 * * * * * 3192 * 3298 98 0 * * * * 0 * 3428 0 1000 Q 99 * * * * * * * * * * 1764 * 3418 3223 3298 3201 * * * 1764 99 0 * * * * * * 3547 0 0 A 100 1655 * * 3305 * * * * * * * * * 2361 2370 * * 2371 * * 100 0 * * * * * * 3547 0 0 P 101 * * * * * * * * * * * * 0 * * * * * * * 101 185 3057 * 1000 1000 * * 3547 1000 0 R 102 2909 * * * * * * * * * * * * 1889 2989 * * * 1087 * 102 0 * * * * * * 3232 0 0 L 103 * * * * * * * * * 0 * * * * * * * * * * 103 0 * * * * * * 3232 0 0 R 104 * * * * * * * * * * * * * 2927 203 * * * * * 104 0 * * * * * * 2957 0 0 N 105 * * * * * * 1042 * * * * 959 * * * * * * * * 105 0 * * 0 * * * 1285 0 0 //