Phyre 2 Results for P75697

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Email | l.a.kelley@imperial.ac.uk
Description | P75697
Date | Thu Jan 5 12:13:16 GMT 2012
Unique Job ID | 337f6db310112e43

Summary |

Top model
Image coloured by rainbow N → C terminus
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Model (left) based on template c1hm8A_
Top template information
PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase; PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a
Confidence and coverage
Confidence: | 100.0% | Coverage: | 92%
212 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | D | L | L | P | F | L | L | D | A | N | L | S | A | T | N | P | P | A | I | P | H | W | W | K | R | Q | P | L | I | P | N | L | L | S | Q | E | L | K | N | Y | L | K | L | N | V | K | E | K | N | I | Q | I | A | D | Q | V | I | I | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | E | T | A | G | E | V | V | I | G | A | N | T | R | I | C | H | G | A | V | I | Q | G | P | V | V | I | G | A | N | C | L | I | G | N | Y | A | F | I | R | P | G | T | I | I | S | N | G | V | K | I | G | F | A | T | E | I | K | N | A | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | I | E | A | E | A | T | I | G | P | Q | C | F | I | A | D | S | V | V | A | N | Q | A | Y | L | G | A | Q | V | R | T | S | N | H | R | L | D | E | Q | P | V | S | V | R | T | P | E | G | I | I | A | T | G | C | D | K | L | G | C | Y | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230
Sequence |  | G | Q | R | S | R | L | G | V | Q | V | I | I | L | P | G | R | I | I | S | P | N | T | Q | L | G | P | R | V | I | V | E | R | N | L | P | T | G | T | Y | S | L | R | Q | E | L | I | R | T | G | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c1hm8A_ |

### PDB 1hm8 chain A

Region: 2 - 230
Aligned: 212
Modelled: 212
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase;
PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a

Phyre2
2 |
| c3i3aC_ |

### PDB 3i3a chain C

Region: 51 - 224
Aligned: 171
Modelled: 174
Confidence: 100.0%
Identity: 12%
PDB header:transferase
Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-
PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa

Phyre2
3 |
| c2iu9C_ |

### PDB 2iu9 chain C

Region: 30 - 221
Aligned: 189
Modelled: 192
Confidence: 100.0%
Identity: 19%
PDB header:transferase
Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine
PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii)

Phyre2
4 |
| c2v0hA_ |

### PDB 2v0h chain A

Region: 2 - 228
Aligned: 210
Modelled: 210
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu)

Phyre2
5 |
| d1j2za_ |

### PDB 1j2z chain A

Region: 52 - 221
Aligned: 167
Modelled: 167
Confidence: 100.0%
Identity: 14%
Fold: Single-stranded left-handed beta-helix
Superfamily: Trimeric LpxA-like enzymes
Family: UDP N-acetylglucosamine acyltransferase

Phyre2
6 |
| c3pmoA_ |

### PDB 3pmo chain A

Region: 33 - 224
Aligned: 188
Modelled: 192
Confidence: 100.0%
Identity: 20%
PDB header:transferase
Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase;
PDBTitle: the structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution

Phyre2
7 |
| c3eh0C_ |

### PDB 3eh0 chain C

Region: 33 - 221
Aligned: 186
Modelled: 186
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-
PDBTitle: crystal structure of lpxd from escherichia coli

Phyre2
8 |
| d2jf2a1 |

### PDB 2jf2 chain A domain 1

Region: 49 - 224
Aligned: 173
Modelled: 173
Confidence: 100.0%
Identity: 16%
Fold: Single-stranded left-handed beta-helix
Superfamily: Trimeric LpxA-like enzymes
Family: UDP N-acetylglucosamine acyltransferase

Phyre2
9 |
| c3r0sA_ |

### PDB 3r0s chain A

Region: 52 - 224
Aligned: 170
Modelled: 170
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o-
PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni

Phyre2
10 |
| c2oi6A_ |

### PDB 2oi6 chain A

Region: 2 - 224
Aligned: 221
Modelled: 223
Confidence: 100.0%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: e. coli glmu- complex with udp-glcnac, coa and glcn-1-po4

Phyre2
11 |
| c2ggqA_ |

### PDB 2ggq chain A

Region: 2 - 220
Aligned: 214
Modelled: 219
Confidence: 100.0%
Identity: 28%
PDB header:transferase
Chain: A: PDB Molecule:401aa long hypothetical glucose-1-phosphate
PDBTitle: complex of hypothetical glucose-1-phosphate thymidylyltransferase from2 sulfolobus tokodaii

Phyre2
12 |
| c1yp3C_ |

### PDB 1yp3 chain C

Region: 2 - 210
Aligned: 185
Modelled: 185
Confidence: 99.9%
Identity: 14%
PDB header:transferase
Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small
PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp

Phyre2
13 |
| c3fsbB_ |

### PDB 3fsb chain B

Region: 60 - 230
Aligned: 171
Modelled: 171
Confidence: 99.9%
Identity: 19%
PDB header:transferase
Chain: B: PDB Molecule:qdtc;
PDBTitle: crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d-2 glucose n-acetyl transferase from thermoanaerobacterium3 thermosaccharolyticum in complex with coa and dtdp-3-amino-4 quinovose

Phyre2
14 |
| d1qrea_ |

### PDB 1qre chain A

Region: 54 - 224
Aligned: 169
Modelled: 166
Confidence: 99.9%
Identity: 15%
Fold: Single-stranded left-handed beta-helix
Superfamily: Trimeric LpxA-like enzymes
Family: gamma-carbonic anhydrase-like

Phyre2
15 |
| c1qreA_ |

### PDB 1qre chain A

Region: 54 - 224
Aligned: 169
Modelled: 166
Confidence: 99.9%
Identity: 15%
PDB header:lyase
Chain: A: PDB Molecule:carbonic anhydrase;
PDBTitle: a closer look at the active site of gamma-carbonic anhydrases: high2 resolution crystallographic studies of the carbonic anhydrase from3 methanosarcina thermophila

Phyre2
16 |
| d2oi6a1 |

### PDB 2oi6 chain A domain 1

Region: 53 - 221
Aligned: 165
Modelled: 166
Confidence: 99.9%
Identity: 16%
Fold: Single-stranded left-handed beta-helix
Superfamily: Trimeric LpxA-like enzymes
Family: GlmU C-terminal domain-like

Phyre2
17 |
| c3mqhD_ |

### PDB 3mqh chain D

Region: 69 - 229
Aligned: 152
Modelled: 152
Confidence: 99.9%
Identity: 18%
PDB header:transferase
Chain: D: PDB Molecule:lipopolysaccharides biosynthesis acetyltransferase;
PDBTitle: crystal structure of the 3-n-acetyl transferase wlbb from bordetella2 petrii in complex with coa and udp-3-amino-2-acetamido-2,3-dideoxy3 glucuronic acid

Phyre2
18 |
| c3d98A_ |

### PDB 3d98 chain A

Region: 2 - 206
Aligned: 177
Modelled: 173
Confidence: 99.9%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form

Phyre2
19 |
| d1g97a1 |

### PDB 1g97 chain A domain 1

Region: 53 - 230
Aligned: 174
Modelled: 178
Confidence: 99.9%
Identity: 17%
Fold: Single-stranded left-handed beta-helix
Superfamily: Trimeric LpxA-like enzymes
Family: GlmU C-terminal domain-like

Phyre2
20 |
| c2qkxA_ |

### PDB 2qkx chain A

Region: 2 - 204
Aligned: 175
Modelled: 171
Confidence: 99.9%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate

Phyre2
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66 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1hm8A_ |
|  | 100.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase; PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a
2 | c3i3aC_ |
|  | 100.0 | 12 | PDB header:transferase Chain: C: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n- PDBTitle: structural basis for the sugar nucleotide and acyl chain2 selectivity of leptospira interrogans lpxa
3 | c2iu9C_ |
|  | 100.0 | 19 | PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine PDBTitle: chlamydia trachomatis lpxd with 100mm udpglcnac (complex ii)
4 | c2v0hA_ |
|  | 100.0 | 18 | PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu)
5 | d1j2za_ |
|  | 100.0 | 14 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase
6 | c3pmoA_ |
|  | 100.0 | 20 | PDB header:transferase Chain: A: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase; PDBTitle: the structure of lpxd from pseudomonas aeruginosa at 1.3 a resolution
7 | c3eh0C_ |
|  | 100.0 | 21 | PDB header:transferase Chain: C: PDB Molecule:udp-3-o-[3-hydroxymyristoyl] glucosamine n- PDBTitle: crystal structure of lpxd from escherichia coli
8 | d2jf2a1 |
|  | 100.0 | 16 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:UDP N-acetylglucosamine acyltransferase
9 | c3r0sA_ |
|  | 100.0 | 15 | PDB header:transferase Chain: A: PDB Molecule:acyl-[acyl-carrier-protein]--udp-n-acetylglucosamine o- PDBTitle: udp-n-acetylglucosamine acyltransferase from campylobacter jejuni
10 | c2oi6A_ |
|  | 100.0 | 15 | PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: e. coli glmu- complex with udp-glcnac, coa and glcn-1-po4
11 | c2ggqA_ |
|  | 100.0 | 28 | PDB header:transferase Chain: A: PDB Molecule:401aa long hypothetical glucose-1-phosphate PDBTitle: complex of hypothetical glucose-1-phosphate thymidylyltransferase from2 sulfolobus tokodaii
12 | c1yp3C_ |
|  | 99.9 | 14 | PDB header:transferase Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp
13 | c3fsbB_ |
|  | 99.9 | 19 | PDB header:transferase Chain: B: PDB Molecule:qdtc; PDBTitle: crystal structure of qdtc, the dtdp-3-amino-3,6-dideoxy-d-2 glucose n-acetyl transferase from thermoanaerobacterium3 thermosaccharolyticum in complex with coa and dtdp-3-amino-4 quinovose
14 | d1qrea_ |
|  | 99.9 | 15 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like
15 | c1qreA_ |
|  | 99.9 | 15 | PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: a closer look at the active site of gamma-carbonic anhydrases: high2 resolution crystallographic studies of the carbonic anhydrase from3 methanosarcina thermophila
16 | d2oi6a1 |
|  | 99.9 | 16 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like
17 | c3mqhD_ |
|  | 99.9 | 18 | PDB header:transferase Chain: D: PDB Molecule:lipopolysaccharides biosynthesis acetyltransferase; PDBTitle: crystal structure of the 3-n-acetyl transferase wlbb from bordetella2 petrii in complex with coa and udp-3-amino-2-acetamido-2,3-dideoxy3 glucuronic acid
18 | c3d98A_ |
|  | 99.9 | 16 | PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form
19 | d1g97a1 |
|  | 99.9 | 17 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like
20 | c2qkxA_ |
|  | 99.9 | 16 | PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate
21 | c3cj8B_ |
| not modelled | 99.8 | 22 | PDB header:transferase Chain: B: PDB Molecule:2,3,4,5-tetrahydropyridine-2-carboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-carboxylate n-2 succinyltransferase from enterococcus faecalis v583
22 | c3ectA_ |
| not modelled | 99.8 | 17 | PDB header:transferase Chain: A: PDB Molecule:hexapeptide-repeat containing-acetyltransferase; PDBTitle: crystal structure of the hexapeptide-repeat containing-2 acetyltransferase vca0836 from vibrio cholerae
23 | c3eg4A_ |
| not modelled | 99.8 | 17 | PDB header:transferase Chain: A: PDB Molecule:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n- PDBTitle: crystal structure of 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase from brucella melitensis3 biovar abortus 2308
24 | d1mr7a_ |
| not modelled | 99.8 | 12 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like
25 | c3c8vA_ |
| not modelled | 99.8 | 11 | PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase; PDBTitle: crystal structure of putative acetyltransferase (yp_390128.1) from2 desulfovibrio desulfuricans g20 at 2.28 a resolution
26 | c2ic7A_ |
| not modelled | 99.8 | 18 | PDB header:transferase Chain: A: PDB Molecule:maltose transacetylase; PDBTitle: crystal structure of maltose transacetylase from2 geobacillus kaustophilus
27 | c3jqyB_ |
| not modelled | 99.8 | 16 | PDB header:transferase Chain: B: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystal strucutre of the polysia specific acetyltransferase neuo
28 | c3fttA_ |
| not modelled | 99.8 | 20 | PDB header:transferase Chain: A: PDB Molecule:putative acetyltransferase sacol2570; PDBTitle: crystal structure of the galactoside o-acetyltransferase2 from staphylococcus aureus
29 | d1krra_ |
| not modelled | 99.8 | 20 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like
30 | c3srtB_ |
| not modelled | 99.8 | 22 | PDB header:transferase Chain: B: PDB Molecule:maltose o-acetyltransferase; PDBTitle: the crystal structure of a maltose o-acetyltransferase from2 clostridium difficile 630
31 | c2wlgA_ |
| not modelled | 99.8 | 16 | PDB header:transferase Chain: A: PDB Molecule:polysialic acid o-acetyltransferase; PDBTitle: crystallographic analysis of the polysialic acid o-2 acetyltransferase oatwy
32 | d3tdta_ |
| not modelled | 99.8 | 15 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Tetrahydrodipicolinate-N-succinlytransferase, THDP-succinlytransferase, DapD
33 | d2f9ca1 |
| not modelled | 99.8 | 22 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:YdcK-like
34 | c3q1xA_ |
| not modelled | 99.8 | 20 | PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of entamoeba histolytica serine acetyltransferase 12 in complex with l-serine
35 | c3brkX_ |
| not modelled | 99.8 | 11 | PDB header:transferase Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase; PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens
36 | d1ocxa_ |
| not modelled | 99.7 | 18 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like
37 | d1v3wa_ |
| not modelled | 99.7 | 19 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like
38 | d3bswa1 |
| not modelled | 99.7 | 24 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:PglD-like
39 | c3kwdA_ |
| not modelled | 99.7 | 15 | PDB header:lyase, protein binding, photosynthesis Chain: A: PDB Molecule:carbon dioxide concentrating mechanism protein; PDBTitle: inactive truncation of the beta-carboxysomal gamma-carbonic anhydrase,2 ccmm, form 1
40 | c1fwyA_ |
| not modelled | 99.7 | 20 | PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of n-acetylglucosamine 1-phosphate2 uridyltransferase bound to udp-glcnac
41 | c3r3rA_ |
| not modelled | 99.7 | 23 | PDB header:transferase Chain: A: PDB Molecule:ferripyochelin binding protein; PDBTitle: structure of the yrda ferripyochelin binding protein from salmonella2 enterica
42 | c3r1wA_ |
| not modelled | 99.7 | 18 | PDB header:lyase Chain: A: PDB Molecule:carbonic anhydrase; PDBTitle: crystal structure of a carbonic anhydrase from a crude oil degrading2 psychrophilic library
43 | c3ixcA_ |
| not modelled | 99.7 | 16 | PDB header:transferase Chain: A: PDB Molecule:hexapeptide transferase family protein; PDBTitle: crystal structure of hexapeptide transferase family protein from2 anaplasma phagocytophilum
44 | d1t3da_ |
| not modelled | 99.7 | 19 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase
45 | c1t3dB_ |
| not modelled | 99.7 | 18 | PDB header:transferase Chain: B: PDB Molecule:serine acetyltransferase; PDBTitle: crystal structure of serine acetyltransferase from e.coli at 2.2a
46 | d1ssqa_ |
| not modelled | 99.7 | 17 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Serine acetyltransferase
47 | c3f1xA_ |
| not modelled | 99.7 | 25 | PDB header:transferase Chain: A: PDB Molecule:serine acetyltransferase; PDBTitle: three dimensional structure of the serine acetyltransferase from2 bacteroides vulgatus, northeast structural genomics consortium target3 bvr62.
48 | d1xhda_ |
| not modelled | 99.6 | 18 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:gamma-carbonic anhydrase-like
49 | d1xata_ |
| not modelled | 99.6 | 13 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:Galactoside acetyltransferase-like
50 | d1yp2a1 |
| not modelled | 99.6 | 18 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like
51 | c3fsyC_ |
| not modelled | 99.6 | 12 | PDB header:transferase Chain: C: PDB Molecule:tetrahydrodipicolinate n-succinyltransferase; PDBTitle: structure of tetrahydrodipicolinate n-succinyltransferase2 (rv1201c;dapd) in complex with succinyl-coa from mycobacterium3 tuberculosis
52 | c3mc4A_ |
| not modelled | 99.6 | 14 | PDB header:transferase Chain: A: PDB Molecule:ww/rsp5/wwp domain:bacterial transferase PDBTitle: crystal structure of ww/rsp5/wwp domain: bacterial2 transferase hexapeptide repeat: serine o-acetyltransferase3 from brucella melitensis
53 | c3eevC_ |
| not modelled | 99.6 | 17 | PDB header:transferase Chain: C: PDB Molecule:chloramphenicol acetyltransferase; PDBTitle: crystal structure of chloramphenicol acetyltransferase vca0300 from2 vibrio cholerae o1 biovar eltor
54 | d1fxja1 |
| not modelled | 99.0 | 26 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like
55 | c2rijA_ |
| not modelled | 99.0 | 18 | PDB header:transferase Chain: A: PDB Molecule:putative 2,3,4,5-tetrahydropyridine-2-carboxylate n- PDBTitle: crystal structure of a putative 2,3,4,5-tetrahydropyridine-2-2 carboxylate n-succinyltransferase (cj1605c, dapd) from campylobacter3 jejuni at 1.90 a resolution
56 | d1yp2a2 |
| not modelled | 98.8 | 4 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase
57 | c2pa4B_ |
| not modelled | 98.8 | 8 | PDB header:transferase Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of udp-glucose pyrophosphorylase from corynebacteria2 glutamicum in complex with magnesium and udp-glucose
58 | d1iina_ |
| not modelled | 97.9 | 5 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase
59 | d1h5ra_ |
| not modelled | 97.8 | 8 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase
60 | c2cu2A_ |
| not modelled | 97.8 | 13 | PDB header:transferase Chain: A: PDB Molecule:putative mannose-1-phosphate guanylyl transferase; PDBTitle: crystal structure of mannose-1-phosphate geranyltransferase from2 thermus thermophilus hb8
61 | d1mc3a_ |
| not modelled | 97.8 | 8 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase
62 | d1lvwa_ |
| not modelled | 97.5 | 10 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase
63 | d1fxoa_ |
| not modelled | 97.4 | 10 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase
64 | c2x5sB_ |
| not modelled | 96.5 | 6 | PDB header:transferase Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase; PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state.
65 | c2i5kB_ |
| not modelled | 16.8 | 19 | PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of ugp1p
66 | d2icya1 |
| not modelled | 13.8 | 13 | Fold:Single-stranded left-handed beta-helix Superfamily:Trimeric LpxA-like enzymes Family:GlmU C-terminal domain-like

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0