BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (212 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P18473 Periplasmic protein trbC n=41 Tax=root RepID=TRB... 439 e-122 UniRef50_A4TT00 Conjugative transfer protein n=3 Tax=Enterobacte... 206 5e-52 UniRef50_Q4LC38 TrbC protein n=2 Tax=Sodalis glossinidius RepID=... 171 2e-41 UniRef50_B6ICG3 TrbC protein n=1 Tax=Escherichia coli SE11 RepID... 155 1e-36 UniRef50_A4WGT4 Putative uncharacterized protein n=1 Tax=Enterob... 146 4e-34 UniRef50_A4SUD7 TrbC protein n=1 Tax=Aeromonas salmonicida subsp... 141 2e-32 UniRef50_C8QEB4 Type-F conjugative transfer system pilin assembl... 135 9e-31 UniRef50_B2VB15 Probable F pilus assembly protein TrbC n=1 Tax=E... 118 2e-25 UniRef50_Q8KNK6 TrbC n=1 Tax=Salmonella enterica subsp. enterica... 109 6e-23 UniRef50_Q7MBM9 Putative conjugative transfer protein TrbC n=3 T... 83 5e-15 UniRef50_A8QYQ8 TrbC protein n=1 Tax=Fluoribacter dumoffii RepID... 81 3e-14 UniRef50_Q5WRY4 Putative uncharacterized protein n=1 Tax=Legione... 80 4e-14 UniRef50_D1RMN4 Type-F conjugative transfer system pilin assembl... 77 3e-13 UniRef50_D2TZZ3 Conjugal transfer pilus assembly protein TrbC (F... 77 3e-13 UniRef50_Q6MB92 Putative F pilus assembly protein trbC n=1 Tax=C... 77 4e-13 UniRef50_A5KZG3 Putative uncharacterized protein n=1 Tax=Vibrion... 71 3e-11 UniRef50_C5SIL3 Type-F conjugative transfer system pilin assembl... 65 1e-09 UniRef50_Q6LW85 Hypothetical conjugative transfer protein trbC n... 65 1e-09 UniRef50_Q3IUV8 TrbC, sex pilus assembly and mating pair formati... 65 2e-09 UniRef50_Q5ZTS7 Putative conjugative transfer protein TrbC n=1 T... 65 2e-09 UniRef50_B2LS66 Putative conjugative transfer protein TrbC n=1 T... 64 3e-09 UniRef50_D0SGX9 Predicted protein n=1 Tax=Acinetobacter johnsoni... 64 3e-09 UniRef50_Q8D692 Putative uncharacterized protein n=1 Tax=Vibrio ... 63 7e-09 UniRef50_B4RLR3 TrbC n=9 Tax=Neisseria RepID=B4RLR3_NEIG2 61 3e-08 UniRef50_A1WDE9 Putative uncharacterized protein n=1 Tax=Acidovo... 60 5e-08 UniRef50_B4EQG7 Putative conjugative transfer protein n=2 Tax=Bu... 60 5e-08 UniRef50_A9L6J7 Type-F conjugative transfer system pilin assembl... 59 8e-08 UniRef50_A5CC00 Conjugative transfer protein n=9 Tax=Orientia ts... 59 1e-07 UniRef50_D0Z538 Conjugative transfer protein TrbC n=2 Tax=Photob... 59 1e-07 UniRef50_B6ESY3 Putative uncharacterized protein n=1 Tax=Aliivib... 58 2e-07 UniRef50_A3VN15 Putative uncharacterized protein n=1 Tax=Parvula... 57 3e-07 UniRef50_Q0F373 Putative uncharacterized protein n=1 Tax=Maripro... 57 4e-07 UniRef50_Q58AH5 Sex pilus assembly and mating pair formation pro... 54 4e-06 UniRef50_Q5NYF4 Similar to plasmid-like sex pilus assembly and m... 53 5e-06 UniRef50_C9NPU1 Putative uncharacterized protein n=1 Tax=Vibrio ... 53 7e-06 UniRef50_B2I3Z6 Putative uncharacterized protein n=1 Tax=Acineto... 50 4e-05 UniRef50_C5V0C2 Type-F conjugative transfer system pilin assembl... 49 8e-05 UniRef50_A3WDD8 TrbC, sex pilus assembly and mating pair formati... 49 8e-05 UniRef50_A8F1T9 Conjugative transfer protein TrbC n=9 Tax=Ricket... 49 1e-04 UniRef50_A0B4P2 Putative uncharacterized protein n=1 Tax=Burkhol... 48 2e-04 UniRef50_C4YZL4 Type-F conjugative transfer system pilin assembl... 47 3e-04 UniRef50_C5ANW6 Putative uncharacterized protein n=2 Tax=Burkhol... 47 3e-04 UniRef50_A5VGS0 Type-F conjugative transfer system pilin assembl... 47 4e-04 UniRef50_C4NVV1 TraW n=9 Tax=Gammaproteobacteria RepID=C4NVV1_ECOLX 44 0.004 UniRef50_Q1N8Z3 Putative uncharacterized protein n=1 Tax=Sphingo... 42 0.019 UniRef50_C4Z006 Putative type-F conjugative transfer system pili... 39 0.086 >UniRef50_P18473 Periplasmic protein trbC n=41 Tax=root RepID=TRBC_ECOLI Length = 212 Score = 439 bits (1128), Expect = e-122, Method: Compositional matrix adjust. Identities = 212/212 (100%), Positives = 212/212 (100%) Query: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQV 60 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQV Sbjct: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQV 60 Query: 61 LENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPAT 120 LENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPAT Sbjct: 61 LENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPAT 120 Query: 121 LRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGN 180 LRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGN Sbjct: 121 LRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGN 180 Query: 181 LRVGQALEKVAATGDCRQVAHDLLAGKGDSGK 212 LRVGQALEKVAATGDCRQVAHDLLAGKGDSGK Sbjct: 181 LRVGQALEKVAATGDCRQVAHDLLAGKGDSGK 212 >UniRef50_A4TT00 Conjugative transfer protein n=3 Tax=Enterobacteriaceae RepID=A4TT00_YERPP Length = 256 Score = 206 bits (523), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 98/181 (54%), Positives = 132/181 (72%), Gaps = 1/181 (0%) Query: 30 NRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPR 89 N +F++QQE+ S+QLR + + L+ E+QV +NPL D F+ EL ++Q+ + KP Sbjct: 76 NSEFIRQQESFSQQLRGQDNAPLRQILEQQVRQNPLSADDARFIGELKQRQRENLQDKPT 135 Query: 90 QGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQ 149 GALYFVSF+IP+ GLKRML E R + IPATLRGMVNND+KTTA AV++LV+DG+ GV Sbjct: 136 HGALYFVSFAIPQAGLKRMLTEARRYDIPATLRGMVNNDMKTTATAVMALVQDGSASGVA 195 Query: 150 IDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDLLAGKGD 209 IDPT F +YGI +VP+LVV+C +D+IRGN+ + QALEKV G+CR A LL KG+ Sbjct: 196 IDPTRFREYGITSVPSLVVYCEASHDVIRGNIHLKQALEKVVEKGECRDEAQQLL-NKGE 254 Query: 210 S 210 + Sbjct: 255 A 255 >UniRef50_Q4LC38 TrbC protein n=2 Tax=Sodalis glossinidius RepID=Q4LC38_SODGL Length = 203 Score = 171 bits (432), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 91/178 (51%), Positives = 117/178 (65%), Gaps = 12/178 (6%) Query: 31 RQFLKQQENLSRQLR---EKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGK 87 R +L++QE S L E+P A+ QV PL D F+D L K + + DGK Sbjct: 27 RAWLREQERRSADLHVATERP-----AFLRPQV---PLAPDDQRFIDRLAEKSRQAGDGK 78 Query: 88 -PRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATD 146 P + A+YFVSFS+P EGL ML ETR FGIPATLRGMVNND++ T + V++LVK+G D Sbjct: 79 QPAENAVYFVSFSMPLEGLAAMLQETRRFGIPATLRGMVNNDMRETVQRVMALVKNGGAD 138 Query: 147 GVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDLL 204 GVQIDP F +GI++VPALVV C +G+D+IRGNL + L ++A GDC VA LL Sbjct: 139 GVQIDPQPFHAFGIQSVPALVVQCERGFDVIRGNLHIEDGLRRIANDGDCAPVAQALL 196 >UniRef50_B6ICG3 TrbC protein n=1 Tax=Escherichia coli SE11 RepID=B6ICG3_ECOSE Length = 201 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 87/204 (42%), Positives = 125/204 (61%), Gaps = 14/204 (6%) Query: 3 LSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLE 62 +S+ S+A M+ G V AS++ + F++ LR++ D + + L+ Sbjct: 5 VSVCSIAMTCMLSPGIVCASQD-----SAAFIES-------LRDQSDMLRRQATVPEFLQ 52 Query: 63 NPLQ-RSDNHFLDELVRK-QQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPAT 120 P + ++ ++ L RK QQAS K ALYF+SFSIPEEGL RML E R GIPA Sbjct: 53 QPAPGKHNDAWIQSLTRKSQQASARSKKTPRALYFLSFSIPEEGLIRMLPEARALGIPAL 112 Query: 121 LRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGN 180 + G+++ND + TAEAV + ++ T GVQIDP F++YGI +VPALVV C + YD+IRGN Sbjct: 113 VNGLIDNDFRKTAEAVFRITREKNTGGVQIDPMQFAKYGITSVPALVVTCGERYDLIRGN 172 Query: 181 LRVGQALEKVAATGDCRQVAHDLL 204 +R+ ALE+VA G+C VA +L Sbjct: 173 IRLKAALERVAKEGECAPVAEAIL 196 >UniRef50_A4WGT4 Putative uncharacterized protein n=1 Tax=Enterobacter sp. 638 RepID=A4WGT4_ENT38 Length = 206 Score = 146 bits (369), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 88/202 (43%), Positives = 124/202 (61%), Gaps = 13/202 (6%) Query: 9 AALLMMLNG---AVMASENVN-TPENRQFLKQQENLSRQLREKPDHQLKAW-AEKQVLEN 63 A LL +L G V+ASE + + + ++KQQ+ L+++ Q + AE+Q L + Sbjct: 8 ALLLSVLFGGAQTVLASEQASVSASDMAWMKQQQQPLDSLKQRLQGQTMSLPAEQQALIS 67 Query: 64 PLQRSDNHFLDELVRKQQASQDGKPRQ-GALYFVSFSIPEEGLKRMLGETRHFGIPATLR 122 LQ +L R+Q + G+ R A+YFVS +P EGL ML E +G+PATLR Sbjct: 68 RLQ-------GDLARQQAERESGEKRTFPAMYFVSLGLPREGLLPMLKEANRYGVPATLR 120 Query: 123 GMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLR 182 G+VNNDL+ TA A+ L K+ GVQIDPTL+++Y I T+PALVV C +D+IRG+L Sbjct: 121 GLVNNDLRQTASAMFELAKEDKNIGVQIDPTLYTEYHITTIPALVVTCPGRFDVIRGSLP 180 Query: 183 VGQALEKVAATGDCRQVAHDLL 204 + QALEKVA +GDC A +L Sbjct: 181 LKQALEKVAESGDCAATAKQIL 202 >UniRef50_A4SUD7 TrbC protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SUD7_AERS4 Length = 202 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 72/139 (51%), Positives = 91/139 (65%), Gaps = 1/139 (0%) Query: 69 DNHFLDELVRKQQ-ASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNN 127 + + ++L R++ + GKP A YFVSFSIPEEGLKR++ + FGIPATLRGMV Sbjct: 62 NTEWANQLARQRDLQTPQGKPTPQAFYFVSFSIPEEGLKRLILDADAFGIPATLRGMVKG 121 Query: 128 DLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQAL 187 D++ TA AVL LV + GVQIDP F YGI VPALVV C+ YD I GNL + +AL Sbjct: 122 DMRETANAVLRLVNEDKRGGVQIDPKSFGTYGINAVPALVVTCNGQYDRIAGNLALREAL 181 Query: 188 EKVAATGDCRQVAHDLLAG 206 K+A +GDC A +LA Sbjct: 182 TKIAESGDCADTAKAILAA 200 >UniRef50_C8QEB4 Type-F conjugative transfer system pilin assembly protein TrbC n=3 Tax=Pantoea sp. At-9b RepID=C8QEB4_9ENTR Length = 207 Score = 135 bits (340), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 67/130 (51%), Positives = 85/130 (65%), Gaps = 2/130 (1%) Query: 77 VRKQQASQDGKPRQ--GALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAE 134 + QA Q+ R A+YFVS IPEEGL ML + R FGIPATLRG+++ND + TA Sbjct: 71 IAASQADQNSASRTTPAAIYFVSLGIPEEGLLPMLADARRFGIPATLRGLLDNDFRKTAS 130 Query: 135 AVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATG 194 A+ L K GVQIDPTL+ Q+GI+ VPALVV C +D++ G+L V QALE+V G Sbjct: 131 AMFELSKKDKQAGVQIDPTLYQQFGIKAVPALVVTCGGKFDVLYGSLPVKQALEEVKQRG 190 Query: 195 DCRQVAHDLL 204 DC +A LL Sbjct: 191 DCAGIAAQLL 200 >UniRef50_B2VB15 Probable F pilus assembly protein TrbC n=1 Tax=Erwinia tasmaniensis RepID=B2VB15_ERWT9 Length = 172 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 55/129 (42%), Positives = 82/129 (63%), Gaps = 2/129 (1%) Query: 78 RKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVL 137 +KQ ++ +P+ +YF+SFSIP GL M+ + + +GI T+RG+VNND + TA+ Sbjct: 44 QKQAVEENQEPK--FIYFLSFSIPNVGLLSMVNDAKKYGITPTMRGLVNNDFRETAKKSF 101 Query: 138 SLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCR 197 L K+ G IDP LF YGI VPA+V+ C + +D++ G+L V +AL KVA GDC Sbjct: 102 ELSKEDKDFGFIIDPFLFRDYGINAVPAMVITCGEKHDLVYGSLPVKEALGKVAREGDCS 161 Query: 198 QVAHDLLAG 206 ++A +LA Sbjct: 162 EIAKKILAA 170 >UniRef50_Q8KNK6 TrbC n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=Q8KNK6_SALTI Length = 203 Score = 109 bits (272), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 83/214 (38%), Positives = 116/214 (54%), Gaps = 20/214 (9%) Query: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQV 60 MK + SLA LL GA MAS++ ENRQF+ Q L RQ + +A + Sbjct: 1 MKRVLISLALLLTC--GAGMASDHT---ENRQFIHDQLQLDRQ-------RFRALQTPEF 48 Query: 61 LENP--LQRSDNHFLDELVRK-QQASQDG-KPRQGALYFVSFSIPEEGLKRMLGETRHFG 116 L+ P + D FLD + +QA Q G +P AL FVSFS+P + LK+ + + Sbjct: 49 LQQPRPVAPQDQAFLDSQASQFRQAMQPGERPVDAALVFVSFSMPPDELKQRVKDAAELN 108 Query: 117 IPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFC-SQG-- 173 IP +RGMVN D++TTA A S ++ G T F +Y I VP L+V C +QG Sbjct: 109 IPVVIRGMVNGDMRTTANAGRSGEREQYRRGTDRSNT-FRKYNITAVPVLIVACGNQGDT 167 Query: 174 YDIIRGNLRVGQALEKVAATGDCRQVAHDLLAGK 207 D ++G+L + QAL++VA GDC A +LL G+ Sbjct: 168 VDRLQGDLTLHQALKRVAEEGDCADTARNLLRGE 201 >UniRef50_Q7MBM9 Putative conjugative transfer protein TrbC n=3 Tax=Vibrionales RepID=Q7MBM9_VIBVY Length = 237 Score = 83.2 bits (204), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 17/143 (11%) Query: 77 VRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAV 136 ++K + D P+ G + FVS ++PE LK++L ++ H G+P +RG++ + TA+ + Sbjct: 91 IQKPTRNPDQAPK-GVMVFVSLTMPENALKQLLMQSEHLGVPLVIRGVLTDGFPATAKRI 149 Query: 137 LSLV----KDGATDGVQIDPTLFSQYGIRTVPALVVF-----------CSQGYDIIRGNL 181 SL+ K G I P F Q+GI VPA V + YDI+ GN+ Sbjct: 150 ESLIRSPNKAPIKSGFSISPDWFKQFGITKVPAFVSVKPGRCLPEQPCAATDYDILYGNI 209 Query: 182 RVGQALEKVAATGDCRQVAHDLL 204 + QAL+ + A GD +Q H LL Sbjct: 210 SLYQALDYL-ADGDAQQNVHPLL 231 >UniRef50_A8QYQ8 TrbC protein n=1 Tax=Fluoribacter dumoffii RepID=A8QYQ8_9GAMM Length = 140 Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 43/108 (39%), Positives = 63/108 (58%) Query: 95 FVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTL 154 FVSFS+P L+ L E+ IPA L G+ +N +K TA V+ L + + IDPTL Sbjct: 26 FVSFSMPGRLLEETLKESSRLHIPAYLNGLHHNSMKDTALKVMELSQRIPDLNLAIDPTL 85 Query: 155 FSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHD 202 F ++GI+ VPALVV + +D+I G+L + + L +A G+ HD Sbjct: 86 FERFGIQQVPALVVAEEKKFDVIYGHLTLQEGLSWIAGHGETHFTLHD 133 >UniRef50_Q5WRY4 Putative uncharacterized protein n=1 Tax=Legionella pneumophila str. Lens RepID=Q5WRY4_LEGPL Length = 159 Score = 80.1 bits (196), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 42/108 (38%), Positives = 63/108 (58%) Query: 96 VSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLF 155 VSFSIPE L+ L E+ IPA L G+ + + TA V++L K + IDPTLF Sbjct: 46 VSFSIPETLLQETLKESAQLNIPAYLNGLYRDSMSETALKVMALSKHIPNLNLAIDPTLF 105 Query: 156 SQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDL 203 ++GI+ VPA++V Q +D+I G+L + + L ++A GD D+ Sbjct: 106 ERFGIQQVPAVIVDDGQTFDVIYGHLSIQEGLARMAGRGDVDFTPRDI 153 >UniRef50_D1RMN4 Type-F conjugative transfer system pilin assembly protein TrbC n=2 Tax=Legionella RepID=D1RMN4_LEGLO Length = 220 Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 75/154 (48%), Gaps = 22/154 (14%) Query: 73 LDELVRKQQ----ASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNND 128 +D+++ + + +Q G+ GA+ FVSFS+PE L + E + IP + G++ D Sbjct: 62 IDQIIEQSRLGTPVAQKGQTVDGAVLFVSFSMPESLLFSLSDEAASYKIPVVINGLIEGD 121 Query: 129 LKTTAEAVLSLVKDG-----ATDGVQIDPTLFSQYGIRTVPALVV-----------FC-S 171 K T A L +GV +DP F Q+ I VPALVV C Sbjct: 122 FKKTITAFSKLHAKAKESKWVFNGVSVDPLWFEQFHITAVPALVVSKRPSSCGQQLLCPE 181 Query: 172 QGYDIIRGNLRVGQALEKVAATGD-CRQVAHDLL 204 Q YD++ GN + ++L+ +A GD +VA LL Sbjct: 182 QTYDVVYGNASLKKSLQLIAQKGDSANEVAQALL 215 >UniRef50_D2TZZ3 Conjugal transfer pilus assembly protein TrbC (Fragment) n=1 Tax=Arsenophonus nasoniae RepID=D2TZZ3_9ENTR Length = 173 Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 4/106 (3%) Query: 83 SQDGKPRQG----ALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLS 138 +++G P +G YF+S SIPE+ L +L + GI G+++N ++ TA +L+ Sbjct: 55 AEEGMPLEGITQETAYFLSSSIPEKTLVPLLKSAQAKGIAVYFNGLIDNSMEKTARYLLN 114 Query: 139 LVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVG 184 L++ G+Q+DP F YGI VPALV C + +DI+ G++ +G Sbjct: 115 LIQKYQVAGIQVDPLRFDYYGITQVPALVKRCGKDFDIVYGSVALG 160 >UniRef50_Q6MB92 Putative F pilus assembly protein trbC n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MB92_PARUW Length = 198 Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 11/190 (5%) Query: 13 MMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLK-----AWAEKQVLENPLQR 67 M+LNG + E + + +LKQ ++Q+ EK H LK A + L NPL+ Sbjct: 1 MLLNGGLWGEEMQHFALDSNWLKQ----AQQVDEKAVHWLKDHLKERLASENFLRNPLEE 56 Query: 68 SDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNN 127 + + Q A + K F+SFS+ + ++ E G LRG+ N Sbjct: 57 KGSQLAT--TQCQSAGMEVKEESPLYVFMSFSLDDRLWVQLSQELEKLGGIFVLRGLPQN 114 Query: 128 DLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQAL 187 K A + +L + G +QI P LF ++ I+ VP + V + YD I GNL + AL Sbjct: 115 SFKELANRIFTLQEQGVRVPIQIHPQLFQRFDIQLVPTIAVTEGEQYDKISGNLSIQGAL 174 Query: 188 EKVAATGDCR 197 EK++ G+ + Sbjct: 175 EKMSLYGETQ 184 >UniRef50_A5KZG3 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZG3_9GAMM Length = 228 Score = 70.9 bits (172), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 88/183 (48%), Gaps = 19/183 (10%) Query: 36 QQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQGALYF 95 Q L+ L H+ +A + Q L+N LQ S L ++ Q + + K QG + F Sbjct: 46 HQSELTTLLERGQQHKQEALSMNQHLDNALQDSP---LASVLGVPQENPNKK-AQGVMVF 101 Query: 96 VSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVK-----DGATDGVQI 150 VS S+P+ LK++L +++ + +P +RG++ + T ++ L++ + G I Sbjct: 102 VSLSMPDNALKQLLKQSQQYQVPLVIRGVLPEGMVPTTSRIMHLLEASDEGEAIEGGFAI 161 Query: 151 DPTLFSQYGIRTVPALVVF---CSQ------GYDIIRGNLRVGQALEKVAATGDCRQVAH 201 P F Q+ I VP V C++ YD++ GNL + AL + + GD +A Sbjct: 162 SPQWFRQFNITHVPVFVAIGDACNEASCPKNAYDVVHGNLSLPNAL-TILSQGDVGHIAK 220 Query: 202 DLL 204 +L Sbjct: 221 QVL 223 >UniRef50_C5SIL3 Type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SIL3_9CAUL Length = 243 Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 17/122 (13%) Query: 91 GALYF-VSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQ 149 G +Y VS S+P E L+++ + + G +RG V KTT + +L + A GV Sbjct: 105 GVVYVAVSLSMPREALRQLSADAQKAGAVLVIRGFVGGSFKTTRQILLKTFSEEAAAGVL 164 Query: 150 IDPTLFSQYGIRTVPALVVF------CSQG----------YDIIRGNLRVGQALEKVAAT 193 IDP +F QY I VP+ V C G +D++RGN+ + AL+ +A Sbjct: 165 IDPRVFQQYRIDRVPSFVAANTPVASCEDGGLECARTDVPFDLVRGNIPLATALKVLAEK 224 Query: 194 GD 195 GD Sbjct: 225 GD 226 >UniRef50_Q6LW85 Hypothetical conjugative transfer protein trbC n=1 Tax=Photobacterium profundum RepID=Q6LW85_PHOPR Length = 234 Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/215 (24%), Positives = 96/215 (44%), Gaps = 22/215 (10%) Query: 11 LLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREK-PDHQLKA-WAEKQVLENPLQRS 68 LL LN + A+ + + QQ ++ Q E P L A W + E ++ + Sbjct: 19 LLSALNCNLTAANTLGYSQTELKALQQREIAIQAPEHAPTLDLDALWQNAKQFETDMRTT 78 Query: 69 DNHFLDELVRKQQASQDGKPR---QGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMV 125 + L +++ QA+ P +G + F S ++P LK+++ ++ +P +RG++ Sbjct: 79 QHDALSPILK--QANIGDNPNSAAKGVIIFASLTMPSTALKQLMMQSSDLQVPIIIRGVL 136 Query: 126 NNDLKTTAEAVLSLVK----DGATDGVQIDPTLFSQYGIRTVPALVVF----------CS 171 T A+ SL+ + G+ I+P F Q GI+ VPA V C Sbjct: 137 PQGFPATVAAIQSLIHSEDDEVINSGMAINPLWFKQLGIQRVPAFAVIKPGACLPQQPCQ 196 Query: 172 QG-YDIIRGNLRVGQALEKVAATGDCRQVAHDLLA 205 +D++ GN+ + AL +A GD +A +L+ Sbjct: 197 DSDFDVLVGNVSLYDALATLARDGDVPNIAQQVLS 231 >UniRef50_Q3IUV8 TrbC, sex pilus assembly and mating pair formation protein n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID=Q3IUV8_RHOS4 Length = 250 Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 48/150 (32%), Positives = 74/150 (49%), Gaps = 24/150 (16%) Query: 80 QQASQDGKPRQG---ALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNN---DLKTTA 133 ++ + + + R G A+ F SFS+P+ L++M+ E + RG VNN D + Sbjct: 102 EEVAAETRARYGEARAILFASFSMPDTSLRQMMREATAHDLTVVFRGFVNNSVFDTRARL 161 Query: 134 EAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVF------CSQG---------YDIIR 178 E V + +D + IDPTLF ++ IR+VPALVV C+ +D + Sbjct: 162 EEVFA--EDETGEAFGIDPTLFRRFDIRSVPALVVLAEDLGDCATPACEGDPPPRHDRVS 219 Query: 179 GNLRVGQALEKVAA-TGDCRQVAHDLLAGK 207 GN+ + AL +AA G+ VA LL K Sbjct: 220 GNVPLETALRVIAAGNGEAASVARSLLEQK 249 >UniRef50_Q5ZTS7 Putative conjugative transfer protein TrbC n=1 Tax=Legionella pneumophila subsp. pneumophila str. Philadelphia 1 RepID=Q5ZTS7_LEGPH Length = 223 Score = 64.7 bits (156), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 58/111 (52%), Gaps = 13/111 (11%) Query: 92 ALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQID 151 L F+SFS+PE+ LK L + + G +RG+++N K T A+ +L K G+Q+D Sbjct: 91 VLVFLSFSMPEKSLKAWLLQCKKSGATPVIRGLIHNSFKETMTAIQTLSKKTGI-GMQLD 149 Query: 152 PTLFSQYGIRTVPALVVF-----CSQ-------GYDIIRGNLRVGQALEKV 190 P LF + I VPA+V C YD + G++ + ALEK+ Sbjct: 150 PILFKTFDIAMVPAVVYVKDTPACPANMDCKPVSYDSLYGDVSLDYALEKM 200 >UniRef50_B2LS66 Putative conjugative transfer protein TrbC n=1 Tax=Vibrio tapetis RepID=B2LS66_9VIBR Length = 235 Score = 64.3 bits (155), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 16/130 (12%) Query: 90 QGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDG----AT 145 +G + FVS ++P+ L ++L ++ GIP +RG++ T + +L+ G Sbjct: 102 KGVMVFVSLTMPDTALTQLLKQSERTGIPLVIRGVLPQGFTATVTRIQTLINQGNRPAIR 161 Query: 146 DGVQIDPTLFSQYGIRTVPALVVF----C-------SQGYDIIRGNLRVGQALEKVAATG 194 G I P F Q+ I+ VP V C YD++ GN+ + QALE +A G Sbjct: 162 SGFSISPDWFRQFDIQQVPTFVSIKPGQCQPKQSCLPTDYDVVTGNISLYQALETLAQ-G 220 Query: 195 DCRQVAHDLL 204 D +Q LL Sbjct: 221 DTQQEVATLL 230 >UniRef50_D0SGX9 Predicted protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SGX9_ACIJO Length = 246 Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 69/142 (48%), Gaps = 18/142 (12%) Query: 79 KQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLS 138 K++ + + K G + F SFS+P+ LK+++ +T G NND K TA+ + Sbjct: 97 KKKVNDEKKTISGVIGFASFSMPDSSLKKLIADTLKVNGTVVFIGFKNNDFKETAKEIRR 156 Query: 139 LVKDGATDGVQIDPTLFSQYGIRTVPALVVF------------C--SQGYDIIRGNLRVG 184 L D +QI+P F QY + VP++V+ C + Y + G++ V Sbjct: 157 L--DIRKGNIQINPNAFKQYKVDVVPSIVMVKANAEENMDEEGCVMPENYSKVTGDISVE 214 Query: 185 QALEKVAA--TGDCRQVAHDLL 204 ALE +A G+ + +A+D L Sbjct: 215 YALEIMAKGEKGELQTLANDYL 236 >UniRef50_Q8D692 Putative uncharacterized protein n=1 Tax=Vibrio vulnificus RepID=Q8D692_VIBVU Length = 232 Score = 62.8 bits (151), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 16/129 (12%) Query: 91 GALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLV----KDGATD 146 G + FVS ++P+ L+ +L ++ + +P +RG++ + TT + SL+ K Sbjct: 100 GVMIFVSLTMPKSSLQALLKQSEIWQVPLVIRGVLPDGFMTTVNNIQSLLQTNEKKPINS 159 Query: 147 GVQIDPTLFSQYGIRTVPALVVF----------CSQG-YDIIRGNLRVGQALEKVAATGD 195 G I P F + I VP V CS+ YDI++GN+ + ALE + A GD Sbjct: 160 GFAISPEWFQTFNILEVPTFVAVKPGRCLPKQPCSESDYDIVKGNVSLPNALEHL-ANGD 218 Query: 196 CRQVAHDLL 204 V +L Sbjct: 219 NPDVVRQVL 227 >UniRef50_B4RLR3 TrbC n=9 Tax=Neisseria RepID=B4RLR3_NEIG2 Length = 251 Score = 60.8 bits (146), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 60/190 (31%), Positives = 84/190 (44%), Gaps = 28/190 (14%) Query: 17 GAVMASENVNTPENRQFLKQQE--NLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLD 74 G V +N N +NRQ Q E +L PD ++ + ++ +P+ + + Sbjct: 47 GKVTRVKNPNVGDNRQ---QPEIPDLKGIKHRVPD--VRDYGNAKIKADPMSIAQKY--- 98 Query: 75 ELVRKQQASQDGKPRQGA-----LYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDL 129 + ASQ+ RQ A + FVSFS+PE LKR+ ET G +RG ++ L Sbjct: 99 -----RTASQEA--RQAAEKADLMVFVSFSMPEASLKRIARETAKAGGVMVIRGFKDDSL 151 Query: 130 KTTAEAVLSLVKDGATDG-VQIDPTLFSQYGIRTVPALVVF--CSQGYDIIRGNLRVGQA 186 K T +A L A G + I P LF YGI VP V+ G D N +G Sbjct: 152 KATVKAAEEL---AALQGDMLIHPELFDHYGITEVPVTVIARNSEDGLDGCAVNSELGMC 208 Query: 187 LEKVAATGDC 196 E VA GD Sbjct: 209 TEHVAVKGDV 218 >UniRef50_A1WDE9 Putative uncharacterized protein n=1 Tax=Acidovorax sp. JS42 RepID=A1WDE9_ACISJ Length = 258 Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 2/76 (2%) Query: 93 LYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDP 152 + F SF++P E LKR++ + G LRG NN LK TA A+ L + G V ++P Sbjct: 127 MIFASFTMPAESLKRIVSQANRVGASVVLRGFKNNSLKDTALAIKELGEQGG--NVLVNP 184 Query: 153 TLFSQYGIRTVPALVV 168 F++Y ++ VP +V+ Sbjct: 185 NAFTKYKVKAVPTMVL 200 >UniRef50_B4EQG7 Putative conjugative transfer protein n=2 Tax=Burkholderia RepID=B4EQG7_BURCJ Length = 233 Score = 60.1 bits (144), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 74/154 (48%), Gaps = 19/154 (12%) Query: 73 LDELVRKQQASQDGKPR--QGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLK 130 LD L Q+ + + R + L F S S+P E LKR++ + G LRG + LK Sbjct: 81 LDPLAVAQRYAARAQSRKQEELLAFASLSMPAESLKRLVRDVARAGGAVVLRGFKDGSLK 140 Query: 131 TTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVF------------CS--QGYDI 176 TT A+ +L D + VQ++P F QY I VPA+V+ CS + Sbjct: 141 TTVSAIQALGVDAS--AVQVNPNAFKQYRITAVPAIVLVKADRALDLDAEGCSLPANFAG 198 Query: 177 IRGNLRVGQALEKVA-ATGDCRQVAHDLLAGKGD 209 + G++ V AL ++ + D + +A +LA G+ Sbjct: 199 VTGDVTVAYALREIGRRSSDYQPLADRILASLGE 232 >UniRef50_A9L6J7 Type-F conjugative transfer system pilin assembly protein TrbC n=6 Tax=Shewanella baltica RepID=A9L6J7_SHEB9 Length = 246 Score = 59.3 bits (142), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 19/140 (13%) Query: 85 DGKPR-----QGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSL 139 D KP G + FVS +P L+++L ++ +P +RG++ T + + L Sbjct: 103 DAKPNPSADANGVMVFVSLGMPATSLQQLLMQSADLQVPLIVRGVLPQGFTATVKQMNHL 162 Query: 140 VKD-GAT--DGVQIDPTLFSQYGIRTVPALVVF----------CSQ-GYDIIRGNLRVGQ 185 + + G T G I+P F+Q+GI VPA V CS +D+I GN+ + Sbjct: 163 IDNKGKTIQSGFAINPQWFTQFGITQVPAFVAVRPNKCQAKQPCSSDDFDVIYGNVSLYD 222 Query: 186 ALEKVAATGDCRQVAHDLLA 205 AL +A G VA LA Sbjct: 223 ALNLLAQHGSIPDVAAKTLA 242 >UniRef50_A5CC00 Conjugative transfer protein n=9 Tax=Orientia tsutsugamushi RepID=A5CC00_ORITB Length = 127 Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 43/80 (53%), Gaps = 5/80 (6%) Query: 89 RQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGV 148 +Q FVSFS+ +E LK +++ FG +RG++NN T + L G + Sbjct: 24 QQKTFIFVSFSMSDEALKSYFNDSQKFGAQLVMRGLINNSFTQTKNKTMEL---GIS--F 78 Query: 149 QIDPTLFSQYGIRTVPALVV 168 IDP+LF QY I VP +V+ Sbjct: 79 DIDPSLFEQYKIDVVPVIVI 98 >UniRef50_D0Z538 Conjugative transfer protein TrbC n=2 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z538_LISDA Length = 216 Score = 58.5 bits (140), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 15/128 (11%) Query: 93 LYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATD----GV 148 L F S ++P LK++L + + +P +RG++ T V LV GV Sbjct: 88 LIFASLNMPSASLKQLLYQANQYRLPVVIRGVLPGGFTQTVNMVQGLVAPNHAKKPLGGV 147 Query: 149 QIDPTLFSQYGIRTVPALVVF---CSQG--------YDIIRGNLRVGQALEKVAATGDCR 197 I+P F Q+ I+ V A VV QG YD++ GN+ V AL + G Sbjct: 148 SINPIWFKQFNIKQVSAFVVMKEGACQGKPPCDPDNYDVVYGNVSVFDALTTLGQRGQYA 207 Query: 198 QVAHDLLA 205 +A+ ++A Sbjct: 208 DIANRVIA 215 >UniRef50_B6ESY3 Putative uncharacterized protein n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6ESY3_ALISL Length = 255 Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 34/126 (26%), Positives = 63/126 (50%), Gaps = 17/126 (13%) Query: 91 GALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLV-----KDGAT 145 G + VS S+P+ L+++L ++ + IP +RG++ T + L+ K Sbjct: 123 GIIALVSLSMPDIALQQLLIQSEQYQIPLIIRGVLPEGFSATVARINHLLTKDHKKHPIN 182 Query: 146 DGVQIDPTLFSQYGIRTVPALVVF----CSQ-------GYDIIRGNLRVGQALEKVAATG 194 G+ I+P F+Q+ I VPA + C+Q +D++ GN+ +G AL + + G Sbjct: 183 SGIAINPQWFTQFNITQVPAFISIKEGKCTQKGPCRAEDFDVLYGNISMGDAL-SILSKG 241 Query: 195 DCRQVA 200 D ++ A Sbjct: 242 DAKENA 247 >UniRef50_A3VN15 Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VN15_9PROT Length = 241 Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 25/162 (15%) Query: 55 WAEKQVLENPLQRSDNHFLDELVRK----QQASQDGKPRQGALYFVSFSIPEEGLKRMLG 110 W E + + D LD +V A Q+ G L FVSFS+PE+ L++++ Sbjct: 65 WGEAAAPSDTTEPVD---LDAMVADAGVVSAARQETSGPAGVLVFVSFSMPEQSLRQLVL 121 Query: 111 ETRHFGIPATLRGMVNNDLKTTAEAVLSLV-KDGATD---GVQIDPTLFSQYGIRTVPAL 166 + +P L+G V LK TA + +L+ D D GV IDP F + + VPA Sbjct: 122 DAHKAQVPVLLQGFVGGSLKETATRMRALLGADTGQDLLGGVVIDPRAFRIFRVTEVPAF 181 Query: 167 VVF------C--------SQGYDIIRGNLRVGQALEKVAATG 194 + C +D I GN+ +G AL +A+ G Sbjct: 182 IATRAPLPDCDGLDCDAPPPPHDRIAGNMSLGAALSALASEG 223 >UniRef50_Q0F373 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F373_9PROT Length = 242 Score = 57.0 bits (136), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 20/118 (16%) Query: 73 LDELVRKQQASQDGKPRQ----GALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNN- 127 +E+VR Q + G+ Q G L FVSFS+P E LKR++ + LRG+V++ Sbjct: 78 FNEVVRNAQKAGLGRDAQRASPGLLVFVSFSMPAESLKRLVRQAEQAHAAILLRGLVSDS 137 Query: 128 ----DLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVF-------CSQGY 174 + TA+A V+ DGV I+P F ++ + VP+ V+ C G+ Sbjct: 138 SGRPSFRATADA----VRRSGVDGVSINPVAFERFHVSNVPSFVLLLEDECPSCGDGF 191 >UniRef50_Q58AH5 Sex pilus assembly and mating pair formation protein n=3 Tax=Burkholderiaceae RepID=Q58AH5_RALME Length = 244 Score = 53.5 bits (127), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 21/137 (15%) Query: 73 LDELVRKQQASQDGKP---RQGA---LYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVN 126 LD+++++ ++ G P +QGA + FVSFS+P+ L + + + G +RG + Sbjct: 81 LDDIMQQYAEAKKGGPAPAKQGANDLIIFVSFSMPKPVLTELARQAKETGAVMVVRGFKD 140 Query: 127 NDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVF-----------CS--QG 173 LK T A L + + GA +I P LF + + VP VV CS Sbjct: 141 GSLKATKLAALEVNRAGAP--WEIHPDLFKAFKVTAVPTFVVASAEAESVLDDGCSPETA 198 Query: 174 YDIIRGNLRVGQALEKV 190 Y + GN+ V AL+ + Sbjct: 199 YSAVAGNMSVELALDTI 215 >UniRef50_Q5NYF4 Similar to plasmid-like sex pilus assembly and mating formation protein trbC n=5 Tax=Betaproteobacteria RepID=Q5NYF4_AZOSE Length = 249 Score = 53.1 bits (126), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 1/78 (1%) Query: 91 GALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQI 150 G L FVS S+P+ L+R++ + LRG + L+TT V L+ D VQI Sbjct: 116 GLLVFVSLSMPQPTLQRLIDQAARAQASIVLRGFADGSLRTTVARVQRLIGDRQV-AVQI 174 Query: 151 DPTLFSQYGIRTVPALVV 168 DP F +Y + VPA V+ Sbjct: 175 DPQAFDRYAVTRVPAFVL 192 >UniRef50_C9NPU1 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NPU1_9VIBR Length = 193 Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 37/132 (28%), Positives = 63/132 (47%), Gaps = 16/132 (12%) Query: 93 LYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVK-DGATD---GV 148 L F+S ++P+ L+ +L ++ + P +RG + TA+ ++ L+ GA GV Sbjct: 61 LVFISLTMPDASLRSLLKQSTQWQAPLLIRGPLPAGFTATAQRLMELLNAKGALPIRAGV 120 Query: 149 QIDPTLFSQYGIRTVPALVVF----CSQGYDI-------IRGNLRVGQALEKVAATGDCR 197 IDP F ++ +R VP V+ C + I+GN+ + ALE + +T Sbjct: 121 AIDPDAFHRFHVRDVPTFVLIKSNRCQARWPCGPDDHAKIKGNVSIRTALEAL-STSPLA 179 Query: 198 QVAHDLLAGKGD 209 VA LL + D Sbjct: 180 DVAETLLEAQRD 191 >UniRef50_B2I3Z6 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii ACICU RepID=B2I3Z6_ACIBC Length = 235 Score = 50.4 bits (119), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/226 (22%), Positives = 103/226 (45%), Gaps = 36/226 (15%) Query: 13 MMLNGAVMASENVNT---PENRQFLKQQENLSRQLREKPDHQL---KAWAEKQVLENPLQ 66 ++L + S NV++ P ++ K+ + + Q +K D ++ KA + ++ ++ Sbjct: 4 LILASICLLSCNVHSADFPSEQEIKKEMDKVKNQTFKKSDWEMAQEKARKQIEIFKSVEA 63 Query: 67 RSDNH-----------FLDELV-RKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRH 114 R +N LD++ R ++ +++ K G L F S S+P++ L +++ + Sbjct: 64 RPNNFPNINVQKPNGINLDDIAARYKRKAENKKNVDGILAFASLSMPKDALNKLVTDVTK 123 Query: 115 FGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVF----- 169 G RG + + A+A+ + A +QI+P F QY + +VPA+V+ Sbjct: 124 AGGVVVFRGFKDGNYMEMAKAISQIGVKSA--NIQINPNAFKQYRVDSVPAIVLVKPRAE 181 Query: 170 -------C--SQGYDIIRGNLRVGQALEKV--AATGDCRQVAHDLL 204 C + + I G++ + ALE++ T + Q+A L Sbjct: 182 ENLDEEGCVLPENHSKITGDISLEYALEQMEKKETAELSQIAKRYL 227 >UniRef50_C5V0C2 Type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V0C2_9PROT Length = 219 Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 5/107 (4%) Query: 93 LYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDP 152 + FVSFS+P E L R++ ++ G RG + L ++ + L+ + V + P Sbjct: 87 MVFVSFSMPRENLLRIVEQSERTGARLIFRGFTGDKLTDMSKRIADLLGSHRVEAV-VHP 145 Query: 153 TLFSQYGIRTVPALVVFCSQ-GYDIIRGNLRVGQALEKVAATGDCRQ 198 F+Q+ + VPALV+ S G + G QA V TGD Q Sbjct: 146 PAFTQFKVNQVPALVISQSDAGNQLDNG---CAQAERYVKVTGDVSQ 189 >UniRef50_A3WDD8 TrbC, sex pilus assembly and mating pair formation protein n=5 Tax=Erythrobacter RepID=A3WDD8_9SPHN Length = 251 Score = 49.3 bits (116), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 21/141 (14%) Query: 73 LDELVRKQQ----ASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNND 128 LD ++R Q A+ PR + F S ++PE LK ++ + G LRG D Sbjct: 94 LDGMIRAQADAEVAAMGDTPRF--IAFASLAMPEPSLKALVRDVSRAGGVTVLRGFPQGD 151 Query: 129 LKTTAEAVLSLVKDGATDG-VQIDPTLFSQYGIRTVPALVVFCS-----QGYDI------ 176 + + ++ DG G + IDP LF + I+ P+ V+ S G+D Sbjct: 152 SARFKKRIAAIWSDGDEAGALGIDPRLFRAFDIKVTPSFVMIASDFSPCDGFDCKDVLPP 211 Query: 177 ---IRGNLRVGQALEKVAATG 194 I GN+ V + L+ A+ G Sbjct: 212 HDRIAGNISVAEVLDTFASGG 232 >UniRef50_A8F1T9 Conjugative transfer protein TrbC n=9 Tax=Rickettsia RepID=A8F1T9_RICM5 Length = 155 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 10/97 (10%) Query: 95 FVSFSIPEEGLKRMLGETRHFGIPATLRGMVNND-LKTTAEAVLSLVKDGATDGVQIDPT 153 FVS S+P+ LK E G +RG+ N+ L T A+A D IDP Sbjct: 59 FVSLSMPDSALKSYYIEAEQAGARLVIRGLKNSSFLDTKAKA------DEINISFDIDPN 112 Query: 154 LFSQYGIRTVPALVVFCSQGYDIIR--GNLRVGQALE 188 LF +Y I +VPA++V S+G + R G++ + ALE Sbjct: 113 LFEEYQITSVPAIIV-NSEGKGVKRLTGHISLHDALE 148 >UniRef50_A0B4P2 Putative uncharacterized protein n=1 Tax=Burkholderia cenocepacia HI2424 RepID=A0B4P2_BURCH Length = 262 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 2/74 (2%) Query: 95 FVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTL 154 F SFS+P L R++ G RG N+ LK TA + L A+ G+ ++P Sbjct: 132 FASFSMPAASLVRLVKTMNQAGGTVVFRGFKNDSLKATAAEMQRL--GIASGGIVVNPKA 189 Query: 155 FSQYGIRTVPALVV 168 F+QY I VPA VV Sbjct: 190 FTQYRIARVPAYVV 203 >UniRef50_C4YZL4 Type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4YZL4_9RICK Length = 120 Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%) Query: 95 FVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTL 154 FVSFS+ +E LK E+ +RG+VNN+ T + L L + IDP L Sbjct: 26 FVSFSMSDEALKAYYRESEELQAILVIRGLVNNNFLDTRQKALDL-----SINFNIDPEL 80 Query: 155 FSQYGIRTVPALV 167 F Y + +VP ++ Sbjct: 81 FENYHVTSVPVII 93 >UniRef50_C5ANW6 Putative uncharacterized protein n=2 Tax=Burkholderia glumae BGR1 RepID=C5ANW6_BURGB Length = 263 Score = 47.4 bits (111), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 4/83 (4%) Query: 93 LYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDP 152 + F SFS+P+ L R++ G RG ++ LK TA + L A+ G+ ++P Sbjct: 131 VAFASFSMPDASLVRLIKTMHIAGGTVVFRGFKDDSLKATAAEMQRL--GVASGGIVVNP 188 Query: 153 TLFSQYGIRTVPALVVFCSQGYD 175 F+QY + VPA VV +QG D Sbjct: 189 KAFTQYRVSRVPAFVV--TQGGD 209 >UniRef50_A5VGS0 Type-F conjugative transfer system pilin assembly protein TrbC n=4 Tax=Sphingomonadaceae RepID=A5VGS0_SPHWW Length = 247 Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 24/167 (14%) Query: 44 LREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQGA----LYFVSFS 99 +RE ++ A K + + P D DE+V Q A+ + + G + F S S Sbjct: 65 VREAGTENMRQVAAKDLPKGPDGAID---FDEIV--QGAAGNASVKSGEAPQFIVFASLS 119 Query: 100 IPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLV-KDGATDGVQIDPTLFSQY 158 +P + LK ++ +T G RG NN +K A + +V + V IDP LF + Sbjct: 120 MPPQSLKPLIRDTARAGGVVVFRGFPNNSMKEFATRLGQIVERQDEFANVGIDPRLFRAF 179 Query: 159 GIRTVPALVVFCSQ--------------GYDIIRGNLRVGQALEKVA 191 ++ VP V S YD + GN+ V AL A Sbjct: 180 NVQAVPTYVAVSSDFDLCAGFSCQTKVPPYDRMTGNVTVEYALSSFA 226 >UniRef50_C4NVV1 TraW n=9 Tax=Gammaproteobacteria RepID=C4NVV1_ECOLX Length = 421 Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 84/181 (46%), Gaps = 16/181 (8%) Query: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSR--QLREKPD-----HQLK 53 + S L AL+ + G A E+ T +++ ++Q + +++ Q E P H + Sbjct: 9 IPCSKSVLVALMFSVAGGAYAQESPLTEQDKALIEQGKQIAQKAQKMEMPSLLQNQHMDE 68 Query: 54 AWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETR 113 A AE + LQ + N L E+ RKQ A + L F S S+ E+GL +L T Sbjct: 69 AQAEAKAFFKQLQTT-NPTLKEMHRKQ-AEKGIYSDHRILVFASLSLGEQGLDDVL--TA 124 Query: 114 HFGIPATL---RGMVNN-DLKTTAEAVLSLV-KDGATDGVQIDPTLFSQYGIRTVPALVV 168 G P ++ RG+ +L +A+ +L K + I+PTLF Y I VP +V+ Sbjct: 125 VSGQPDSVIVFRGIPEGMNLGQGVKAIQALAAKKDPVPNIIINPTLFKTYNITAVPTIVM 184 Query: 169 F 169 Sbjct: 185 L 185 >UniRef50_Q1N8Z3 Putative uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N8Z3_9SPHN Length = 249 Score = 41.6 bits (96), Expect = 0.019, Method: Compositional matrix adjust. Identities = 55/208 (26%), Positives = 86/208 (41%), Gaps = 41/208 (19%) Query: 20 MASENVNTPENRQFLKQQENLSRQLRE------KPDHQLKAWAEKQVLENPLQR-SDNHF 72 +A+++V+ + LK+ E L++ + D ++K AE Q+ ++ + R SD Sbjct: 20 VAAQSVDGIDITGLLKKAETQGSDLQDFVNDVKRRDQEMKDQAE-QIAQHAMTRISDPRL 78 Query: 73 ------------LDELVRKQQASQDGKPRQGA----LYFVSFSIPEEGLKRMLGETRHFG 116 DELV AS+ K QG + F S S+P E LK ++ T G Sbjct: 79 KGAAGDPSGAIDFDELV--SGASEILKGGQGGAPMFMVFASTSMPAESLKPLINHTAAAG 136 Query: 117 IPATLRGMVNNDLKTTAEAVLSLV-KDGATDGVQIDPTLFSQYGIRTVPALVVF------ 169 RG N K + +V KD + +DP LF + ++ P VV Sbjct: 137 GVVVFRGFPGNSAKQFMAKLHEVVSKDDTNVRIMVDPRLFRAFNVQVAPTFVVAGSDFEP 196 Query: 170 CSQ--------GYDIIRGNLRVGQALEK 189 C Q D + GN+ V ALE+ Sbjct: 197 CDQLDCVSTPPPSDRMAGNVTVRFALER 224 >UniRef50_C4Z006 Putative type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4Z006_9RICK Length = 218 Score = 39.3 bits (90), Expect = 0.086, Method: Compositional matrix adjust. Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 11/117 (9%) Query: 95 FVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTL 154 FVS S+ L+ E + +G G+ K + +V+ G++ID Sbjct: 94 FVSSSMSLNLLRSYYKEAQRYGGHLVFNGLPKGSFKELLKLAQEIVEGNDIGGLEIDDEA 153 Query: 155 FSQYGIRTVPALVV-------FCSQG----YDIIRGNLRVGQALEKVAATGDCRQVA 200 FS + + VP +V+ F G YD I+G + + ALE+ A GD + A Sbjct: 154 FSSFNAQHVPMIVLSKEVDSLFDVAGDVTQYDSIQGAVSIKYALEEFATRGDMSKEA 210 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P18473 Periplasmic protein trbC n=41 Tax=root RepID=TRB... 292 6e-78 UniRef50_A4TT00 Conjugative transfer protein n=3 Tax=Enterobacte... 216 4e-55 UniRef50_B6ICG3 TrbC protein n=1 Tax=Escherichia coli SE11 RepID... 201 9e-51 UniRef50_A4WGT4 Putative uncharacterized protein n=1 Tax=Enterob... 190 2e-47 UniRef50_Q4LC38 TrbC protein n=2 Tax=Sodalis glossinidius RepID=... 189 4e-47 UniRef50_Q8KNK6 TrbC n=1 Tax=Salmonella enterica subsp. enterica... 182 1e-44 UniRef50_Q6MB92 Putative F pilus assembly protein trbC n=1 Tax=C... 179 5e-44 UniRef50_A4SUD7 TrbC protein n=1 Tax=Aeromonas salmonicida subsp... 174 2e-42 UniRef50_Q6LW85 Hypothetical conjugative transfer protein trbC n... 172 6e-42 UniRef50_C8QEB4 Type-F conjugative transfer system pilin assembl... 170 2e-41 UniRef50_B2VB15 Probable F pilus assembly protein TrbC n=1 Tax=E... 167 2e-40 UniRef50_A5KZG3 Putative uncharacterized protein n=1 Tax=Vibrion... 160 2e-38 UniRef50_B2I3Z6 Putative uncharacterized protein n=1 Tax=Acineto... 159 4e-38 UniRef50_Q7MBM9 Putative conjugative transfer protein TrbC n=3 T... 150 2e-35 UniRef50_D0Z538 Conjugative transfer protein TrbC n=2 Tax=Photob... 148 1e-34 UniRef50_B2LS66 Putative conjugative transfer protein TrbC n=1 T... 147 2e-34 UniRef50_D0SGX9 Predicted protein n=1 Tax=Acinetobacter johnsoni... 143 4e-33 UniRef50_D1RMN4 Type-F conjugative transfer system pilin assembl... 143 4e-33 UniRef50_A8QYQ8 TrbC protein n=1 Tax=Fluoribacter dumoffii RepID... 142 6e-33 UniRef50_Q8D692 Putative uncharacterized protein n=1 Tax=Vibrio ... 141 1e-32 UniRef50_B4RLR3 TrbC n=9 Tax=Neisseria RepID=B4RLR3_NEIG2 140 3e-32 UniRef50_A9L6J7 Type-F conjugative transfer system pilin assembl... 140 3e-32 UniRef50_Q5WRY4 Putative uncharacterized protein n=1 Tax=Legione... 136 4e-31 UniRef50_A5VGS0 Type-F conjugative transfer system pilin assembl... 134 2e-30 UniRef50_B4EQG7 Putative conjugative transfer protein n=2 Tax=Bu... 132 7e-30 UniRef50_B6ESY3 Putative uncharacterized protein n=1 Tax=Aliivib... 131 1e-29 UniRef50_A3VN15 Putative uncharacterized protein n=1 Tax=Parvula... 130 3e-29 UniRef50_C9NPU1 Putative uncharacterized protein n=1 Tax=Vibrio ... 128 1e-28 UniRef50_Q3IUV8 TrbC, sex pilus assembly and mating pair formati... 125 7e-28 UniRef50_Q5ZTS7 Putative conjugative transfer protein TrbC n=1 T... 124 3e-27 UniRef50_C5SIL3 Type-F conjugative transfer system pilin assembl... 123 3e-27 UniRef50_D2TZZ3 Conjugal transfer pilus assembly protein TrbC (F... 120 2e-26 UniRef50_A1WDE9 Putative uncharacterized protein n=1 Tax=Acidovo... 119 9e-26 UniRef50_Q58AH5 Sex pilus assembly and mating pair formation pro... 117 3e-25 UniRef50_Q0F373 Putative uncharacterized protein n=1 Tax=Maripro... 117 3e-25 UniRef50_A8F1T9 Conjugative transfer protein TrbC n=9 Tax=Ricket... 115 7e-25 UniRef50_C5ANW6 Putative uncharacterized protein n=2 Tax=Burkhol... 115 8e-25 UniRef50_A3WDD8 TrbC, sex pilus assembly and mating pair formati... 113 3e-24 UniRef50_A0B4P2 Putative uncharacterized protein n=1 Tax=Burkhol... 112 7e-24 UniRef50_Q5NYF4 Similar to plasmid-like sex pilus assembly and m... 109 5e-23 UniRef50_C5V0C2 Type-F conjugative transfer system pilin assembl... 109 9e-23 UniRef50_A5CC00 Conjugative transfer protein n=9 Tax=Orientia ts... 107 3e-22 UniRef50_C4YZL4 Type-F conjugative transfer system pilin assembl... 103 5e-21 Sequences not found previously or not previously below threshold: UniRef50_Q1N8Z3 Putative uncharacterized protein n=1 Tax=Sphingo... 105 1e-21 UniRef50_C4Z006 Putative type-F conjugative transfer system pili... 100 3e-20 UniRef50_A2SNI6 Sex pilus assembly and mating pair formation pro... 98 2e-19 UniRef50_C1SHA7 Type-F conjugative transfer system pilin assembl... 84 4e-15 UniRef50_Q5NX40 Putative uncharacterized protein trbC n=1 Tax=Ar... 81 2e-14 UniRef50_C4NVV1 TraW n=9 Tax=Gammaproteobacteria RepID=C4NVV1_ECOLX 79 1e-13 UniRef50_Q19NQ8 TrhW n=9 Tax=Enterobacteriaceae RepID=Q19NQ8_ECOK1 79 1e-13 UniRef50_Q1MY34 Putative uncharacterized protein n=1 Tax=Bermane... 77 4e-13 UniRef50_A9AU18 Putative uncharacterized protein n=1 Tax=Burkhol... 71 2e-11 UniRef50_A0R7Q2 Putative uncharacterized protein n=1 Tax=Pelobac... 70 3e-11 UniRef50_B0RKU4 Sex pilus assembly and mating pair formation pro... 70 5e-11 UniRef50_Q2LU04 Hypothetical cytosolic protein n=1 Tax=Syntrophu... 68 2e-10 UniRef50_B3EB54 Type-F conjugative transfer system pilin assembl... 65 1e-09 UniRef50_B7J843 Pilus assembly protein TraW, putative n=1 Tax=Ac... 64 2e-09 UniRef50_Q1NGS4 Hypothetical cytosolic protein n=1 Tax=Sphingomo... 64 3e-09 UniRef50_A0L2Z3 Putative uncharacterized protein n=1 Tax=Shewane... 63 6e-09 UniRef50_C5F051 Putative uncharacterized protein (Fragment) n=1 ... 62 9e-09 UniRef50_A7H3K1 Putative uncharacterized protein n=2 Tax=Campylo... 61 2e-08 UniRef50_C6YK86 Sex pilus assembly protein n=14 Tax=Gammaproteob... 61 3e-08 UniRef50_C0QUV1 Putative uncharacterized protein n=1 Tax=Perseph... 59 1e-07 UniRef50_B7XGR9 Putative pilus assembly protein n=2 Tax=Pseudomo... 55 2e-06 UniRef50_Q8L272 Pilus biogenesis protein n=1 Tax=Proteus vulgari... 51 3e-05 UniRef50_D2U0Q6 Conjugative transfer pilus assembly protein TraW... 47 5e-04 UniRef50_C1MEJ2 Pilus biogenesis protein n=1 Tax=Citrobacter sp.... 46 0.001 UniRef50_B1WUF3 Putative uncharacterized protein n=4 Tax=Chrooco... 44 0.003 >UniRef50_P18473 Periplasmic protein trbC n=41 Tax=root RepID=TRBC_ECOLI Length = 212 Score = 292 bits (747), Expect = 6e-78, Method: Composition-based stats. Identities = 212/212 (100%), Positives = 212/212 (100%) Query: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQV 60 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQV Sbjct: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQV 60 Query: 61 LENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPAT 120 LENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPAT Sbjct: 61 LENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPAT 120 Query: 121 LRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGN 180 LRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGN Sbjct: 121 LRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGN 180 Query: 181 LRVGQALEKVAATGDCRQVAHDLLAGKGDSGK 212 LRVGQALEKVAATGDCRQVAHDLLAGKGDSGK Sbjct: 181 LRVGQALEKVAATGDCRQVAHDLLAGKGDSGK 212 >UniRef50_A4TT00 Conjugative transfer protein n=3 Tax=Enterobacteriaceae RepID=A4TT00_YERPP Length = 256 Score = 216 bits (550), Expect = 4e-55, Method: Composition-based stats. Identities = 99/192 (51%), Positives = 134/192 (69%), Gaps = 1/192 (0%) Query: 19 VMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVR 78 A + N +F++QQE+ S+QLR + + L+ E+QV +NPL D F+ EL + Sbjct: 65 CTALASGADEANSEFIRQQESFSQQLRGQDNAPLRQILEQQVRQNPLSADDARFIGELKQ 124 Query: 79 KQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLS 138 +Q+ + KP GALYFVSF+IP+ GLKRML E R + IPATLRGMVNND+KTTA AV++ Sbjct: 125 RQRENLQDKPTHGALYFVSFAIPQAGLKRMLTEARRYDIPATLRGMVNNDMKTTATAVMA 184 Query: 139 LVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQ 198 LV+DG+ GV IDPT F +YGI +VP+LVV+C +D+IRGN+ + QALEKV G+CR Sbjct: 185 LVQDGSASGVAIDPTRFREYGITSVPSLVVYCEASHDVIRGNIHLKQALEKVVEKGECRD 244 Query: 199 VAHDLLAGKGDS 210 A LL KG++ Sbjct: 245 EAQQLL-NKGEA 255 >UniRef50_B6ICG3 TrbC protein n=1 Tax=Escherichia coli SE11 RepID=B6ICG3_ECOSE Length = 201 Score = 201 bits (512), Expect = 9e-51, Method: Composition-based stats. Identities = 87/205 (42%), Positives = 125/205 (60%), Gaps = 14/205 (6%) Query: 3 LSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLE 62 +S+ S+A M+ G V AS+ ++ F++ LR++ D + + L+ Sbjct: 5 VSVCSIAMTCMLSPGIVCASQ-----DSAAFIES-------LRDQSDMLRRQATVPEFLQ 52 Query: 63 NPLQ-RSDNHFLDELVRK-QQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPAT 120 P + ++ ++ L RK QQAS K ALYF+SFSIPEEGL RML E R GIPA Sbjct: 53 QPAPGKHNDAWIQSLTRKSQQASARSKKTPRALYFLSFSIPEEGLIRMLPEARALGIPAL 112 Query: 121 LRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGN 180 + G+++ND + TAEAV + ++ T GVQIDP F++YGI +VPALVV C + YD+IRGN Sbjct: 113 VNGLIDNDFRKTAEAVFRITREKNTGGVQIDPMQFAKYGITSVPALVVTCGERYDLIRGN 172 Query: 181 LRVGQALEKVAATGDCRQVAHDLLA 205 +R+ ALE+VA G+C VA +L Sbjct: 173 IRLKAALERVAKEGECAPVAEAILR 197 >UniRef50_A4WGT4 Putative uncharacterized protein n=1 Tax=Enterobacter sp. 638 RepID=A4WGT4_ENT38 Length = 206 Score = 190 bits (483), Expect = 2e-47, Method: Composition-based stats. Identities = 88/203 (43%), Positives = 124/203 (61%), Gaps = 13/203 (6%) Query: 9 AALLMMLNGA---VMASENVN-TPENRQFLKQQENLSRQLREKPDHQLKAW-AEKQVLEN 63 A LL +L G V+ASE + + + ++KQQ+ L+++ Q + AE+Q L + Sbjct: 8 ALLLSVLFGGAQTVLASEQASVSASDMAWMKQQQQPLDSLKQRLQGQTMSLPAEQQALIS 67 Query: 64 PLQRSDNHFLDELVRKQQASQDGKPRQ-GALYFVSFSIPEEGLKRMLGETRHFGIPATLR 122 LQ +L R+Q + G+ R A+YFVS +P EGL ML E +G+PATLR Sbjct: 68 RLQ-------GDLARQQAERESGEKRTFPAMYFVSLGLPREGLLPMLKEANRYGVPATLR 120 Query: 123 GMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLR 182 G+VNNDL+ TA A+ L K+ GVQIDPTL+++Y I T+PALVV C +D+IRG+L Sbjct: 121 GLVNNDLRQTASAMFELAKEDKNIGVQIDPTLYTEYHITTIPALVVTCPGRFDVIRGSLP 180 Query: 183 VGQALEKVAATGDCRQVAHDLLA 205 + QALEKVA +GDC A +L Sbjct: 181 LKQALEKVAESGDCAATAKQILE 203 >UniRef50_Q4LC38 TrbC protein n=2 Tax=Sodalis glossinidius RepID=Q4LC38_SODGL Length = 203 Score = 189 bits (481), Expect = 4e-47, Method: Composition-based stats. Identities = 89/176 (50%), Positives = 115/176 (65%), Gaps = 6/176 (3%) Query: 30 NRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGK-P 88 R +L++QE S L + A+ QV PL D F+D L K + + DGK P Sbjct: 26 ERAWLREQERRSADLHVATERP--AFLRPQV---PLAPDDQRFIDRLAEKSRQAGDGKQP 80 Query: 89 RQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGV 148 + A+YFVSFS+P EGL ML ETR FGIPATLRGMVNND++ T + V++LVK+G DGV Sbjct: 81 AENAVYFVSFSMPLEGLAAMLQETRRFGIPATLRGMVNNDMRETVQRVMALVKNGGADGV 140 Query: 149 QIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDLL 204 QIDP F +GI++VPALVV C +G+D+IRGNL + L ++A GDC VA LL Sbjct: 141 QIDPQPFHAFGIQSVPALVVQCERGFDVIRGNLHIEDGLRRIANDGDCAPVAQALL 196 >UniRef50_Q8KNK6 TrbC n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=Q8KNK6_SALTI Length = 203 Score = 182 bits (461), Expect = 1e-44, Method: Composition-based stats. Identities = 77/214 (35%), Positives = 110/214 (51%), Gaps = 20/214 (9%) Query: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQV 60 MK + SLA LL GA MAS++ ENRQF+ Q L RQ + +A + Sbjct: 1 MKRVLISLALLLTC--GAGMASDHT---ENRQFIHDQLQLDRQ-------RFRALQTPEF 48 Query: 61 LENP--LQRSDNHFLDELVRKQQASQD--GKPRQGALYFVSFSIPEEGLKRMLGETRHFG 116 L+ P + D FLD + + + +P AL FVSFS+P + LK+ + + Sbjct: 49 LQQPRPVAPQDQAFLDSQASQFRQAMQPGERPVDAALVFVSFSMPPDELKQRVKDAAELN 108 Query: 117 IPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFC---SQG 173 IP +RGMVN D++TTA A S ++ G T F +Y I VP L+V C Sbjct: 109 IPVVIRGMVNGDMRTTANAGRSGEREQYRRGTDRSNT-FRKYNITAVPVLIVACGNQGDT 167 Query: 174 YDIIRGNLRVGQALEKVAATGDCRQVAHDLLAGK 207 D ++G+L + QAL++VA GDC A +LL G+ Sbjct: 168 VDRLQGDLTLHQALKRVAEEGDCADTARNLLRGE 201 >UniRef50_Q6MB92 Putative F pilus assembly protein trbC n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MB92_PARUW Length = 198 Score = 179 bits (455), Expect = 5e-44, Method: Composition-based stats. Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 12/205 (5%) Query: 13 MMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLK-----AWAEKQVLENPLQR 67 M+LNG + E + + +LKQ ++Q+ EK H LK A + L NPL+ Sbjct: 1 MLLNGGLWGEEMQHFALDSNWLKQ----AQQVDEKAVHWLKDHLKERLASENFLRNPLEE 56 Query: 68 SDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNN 127 + + Q A + K F+SFS+ + ++ E G LRG+ N Sbjct: 57 KGSQLAT--TQCQSAGMEVKEESPLYVFMSFSLDDRLWVQLSQELEKLGGIFVLRGLPQN 114 Query: 128 DLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQAL 187 K A + +L + G +QI P LF ++ I+ VP + V + YD I GNL + AL Sbjct: 115 SFKELANRIFTLQEQGVRVPIQIHPQLFQRFDIQLVPTIAVTEGEQYDKISGNLSIQGAL 174 Query: 188 EKVAATGDCRQVAHDLLAGKGDSGK 212 EK++ G+ ++ A LL + K Sbjct: 175 EKMSLYGETQR-AKFLLQQWKEQQK 198 >UniRef50_A4SUD7 TrbC protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SUD7_AERS4 Length = 202 Score = 174 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 75/160 (46%), Positives = 96/160 (60%), Gaps = 1/160 (0%) Query: 48 PDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQ-ASQDGKPRQGALYFVSFSIPEEGLK 106 P+ +A A + + ++L R++ + GKP A YFVSFSIPEEGLK Sbjct: 41 PEQMQQATALGHQANQRQLPENTEWANQLARQRDLQTPQGKPTPQAFYFVSFSIPEEGLK 100 Query: 107 RMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPAL 166 R++ + FGIPATLRGMV D++ TA AVL LV + GVQIDP F YGI VPAL Sbjct: 101 RLILDADAFGIPATLRGMVKGDMRETANAVLRLVNEDKRGGVQIDPKSFGTYGINAVPAL 160 Query: 167 VVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDLLAG 206 VV C+ YD I GNL + +AL K+A +GDC A +LA Sbjct: 161 VVTCNGQYDRIAGNLALREALTKIAESGDCADTAKAILAA 200 >UniRef50_Q6LW85 Hypothetical conjugative transfer protein trbC n=1 Tax=Photobacterium profundum RepID=Q6LW85_PHOPR Length = 234 Score = 172 bits (436), Expect = 6e-42, Method: Composition-based stats. Identities = 50/214 (23%), Positives = 94/214 (43%), Gaps = 18/214 (8%) Query: 10 ALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREK-PDHQLKA-WAEKQVLENPLQR 67 LL LN + A+ + + QQ ++ Q E P L A W + E ++ Sbjct: 18 ILLSALNCNLTAANTLGYSQTELKALQQREIAIQAPEHAPTLDLDALWQNAKQFETDMRT 77 Query: 68 SDNHFLDELVRKQQASQD-GKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVN 126 + + L ++++ + +G + F S ++P LK+++ ++ +P +RG++ Sbjct: 78 TQHDALSPILKQANIGDNPNSAAKGVIIFASLTMPSTALKQLMMQSSDLQVPIIIRGVLP 137 Query: 127 NDLKTTAEAVLSLVK----DGATDGVQIDPTLFSQYGIRTVPALVVF----------CSQ 172 T A+ SL+ + G+ I+P F Q GI+ VPA V C Sbjct: 138 QGFPATVAAIQSLIHSEDDEVINSGMAINPLWFKQLGIQRVPAFAVIKPGACLPQQPCQD 197 Query: 173 -GYDIIRGNLRVGQALEKVAATGDCRQVAHDLLA 205 +D++ GN+ + AL +A GD +A +L+ Sbjct: 198 SDFDVLVGNVSLYDALATLARDGDVPNIAQQVLS 231 >UniRef50_C8QEB4 Type-F conjugative transfer system pilin assembly protein TrbC n=3 Tax=Pantoea sp. At-9b RepID=C8QEB4_9ENTR Length = 207 Score = 170 bits (431), Expect = 2e-41, Method: Composition-based stats. Identities = 79/213 (37%), Positives = 112/213 (52%), Gaps = 7/213 (3%) Query: 1 MKLSMKSLAALLMMLNGAV-MASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQ 59 MK + + L + A A + V + ++ ++KQQ+ K Q Sbjct: 1 MKTFLMTALMLSAVFPCAARTAVQPVVSGDDMAYMKQQQRDLELF--KSQLQGMNITLPA 58 Query: 60 VLENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPA 119 E + + N + AS + A+YFVS IPEEGL ML + R FGIPA Sbjct: 59 AQEGRVAQLQNDIAASQADQNSAS---RTTPAAIYFVSLGIPEEGLLPMLADARRFGIPA 115 Query: 120 TLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRG 179 TLRG+++ND + TA A+ L K GVQIDPTL+ Q+GI+ VPALVV C +D++ G Sbjct: 116 TLRGLLDNDFRKTASAMFELSKKDKQAGVQIDPTLYQQFGIKAVPALVVTCGGKFDVLYG 175 Query: 180 NLRVGQALEKVAATGDCRQVAHDLLAGKGDSGK 212 +L V QALE+V GDC +A LL G++ + Sbjct: 176 SLPVKQALEEVKQRGDCAGIAAQLLKN-GEAAR 207 >UniRef50_B2VB15 Probable F pilus assembly protein TrbC n=1 Tax=Erwinia tasmaniensis RepID=B2VB15_ERWT9 Length = 172 Score = 167 bits (424), Expect = 2e-40, Method: Composition-based stats. Identities = 60/176 (34%), Positives = 96/176 (54%), Gaps = 6/176 (3%) Query: 31 RQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQ 90 F+KQ++ + +EK + ++ D + E+ +Q+ + + Sbjct: 1 MDFMKQKQAELKDFKEKLSG-----MNINIPQSQQSLVDKNSA-EITSQQKQAVEENQEP 54 Query: 91 GALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQI 150 +YF+SFSIP GL M+ + + +GI T+RG+VNND + TA+ L K+ G I Sbjct: 55 KFIYFLSFSIPNVGLLSMVNDAKKYGITPTMRGLVNNDFRETAKKSFELSKEDKDFGFII 114 Query: 151 DPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDLLAG 206 DP LF YGI VPA+V+ C + +D++ G+L V +AL KVA GDC ++A +LA Sbjct: 115 DPFLFRDYGINAVPAMVITCGEKHDLVYGSLPVKEALGKVAREGDCSEIAKKILAA 170 >UniRef50_A5KZG3 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZG3_9GAMM Length = 228 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 19/183 (10%) Query: 36 QQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQGALYF 95 Q L+ L H+ +A + Q L+N LQ S L ++ Q + + K QG + F Sbjct: 46 HQSELTTLLERGQQHKQEALSMNQHLDNALQDSP---LASVLGVPQENPNKK-AQGVMVF 101 Query: 96 VSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVK-----DGATDGVQI 150 VS S+P+ LK++L +++ + +P +RG++ + T ++ L++ + G I Sbjct: 102 VSLSMPDNALKQLLKQSQQYQVPLVIRGVLPEGMVPTTSRIMHLLEASDEGEAIEGGFAI 161 Query: 151 DPTLFSQYGIRTVPALVVF--------CSQG-YDIIRGNLRVGQALEKVAATGDCRQVAH 201 P F Q+ I VP V C + YD++ GNL + AL + + GD +A Sbjct: 162 SPQWFRQFNITHVPVFVAIGDACNEASCPKNAYDVVHGNLSLPNAL-TILSQGDVGHIAK 220 Query: 202 DLL 204 +L Sbjct: 221 QVL 223 >UniRef50_B2I3Z6 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii ACICU RepID=B2I3Z6_ACIBC Length = 235 Score = 159 bits (403), Expect = 4e-38, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 102/226 (45%), Gaps = 36/226 (15%) Query: 13 MMLNGAVMASENVN---TPENRQFLKQQENLSRQLREKPDHQL---KAWAEKQVLENPLQ 66 ++L + S NV+ P ++ K+ + + Q +K D ++ KA + ++ ++ Sbjct: 4 LILASICLLSCNVHSADFPSEQEIKKEMDKVKNQTFKKSDWEMAQEKARKQIEIFKSVEA 63 Query: 67 RSDNH-----------FLDELV-RKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRH 114 R +N LD++ R ++ +++ K G L F S S+P++ L +++ + Sbjct: 64 RPNNFPNINVQKPNGINLDDIAARYKRKAENKKNVDGILAFASLSMPKDALNKLVTDVTK 123 Query: 115 FGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVF----- 169 G RG + + A+A+ + + +QI+P F QY + +VPA+V+ Sbjct: 124 AGGVVVFRGFKDGNYMEMAKAISQIGVK--SANIQINPNAFKQYRVDSVPAIVLVKPRAE 181 Query: 170 -------C--SQGYDIIRGNLRVGQALEKV--AATGDCRQVAHDLL 204 C + + I G++ + ALE++ T + Q+A L Sbjct: 182 ENLDEEGCVLPENHSKITGDISLEYALEQMEKKETAELSQIAKRYL 227 >UniRef50_Q7MBM9 Putative conjugative transfer protein TrbC n=3 Tax=Vibrionales RepID=Q7MBM9_VIBVY Length = 237 Score = 150 bits (380), Expect = 2e-35, Method: Composition-based stats. Identities = 60/222 (27%), Positives = 105/222 (47%), Gaps = 22/222 (9%) Query: 3 LSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLR-EKPDHQLKAWAEKQVL 61 S+ L ++ + + A E + Q L QQ + + R ++ +Q +A+ ++ + Sbjct: 12 RSLLFLCLVVSLPSQAYTEEELKAFAKLEQELSQQSSATHSFRLDQVQNQARAYQQEALD 71 Query: 62 ENP--LQRSDNHFLDEL--VRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGI 117 + L L ++K + D P+ G + FVS ++PE LK++L ++ H G+ Sbjct: 72 ASRKIQALVKEESLSPLLGIQKPTRNPDQAPK-GVMVFVSLTMPENALKQLLMQSEHLGV 130 Query: 118 PATLRGMVNNDLKTTAEAVLSLVKD----GATDGVQIDPTLFSQYGIRTVPALVVF---- 169 P +RG++ + TA+ + SL++ G I P F Q+GI VPA V Sbjct: 131 PLVIRGVLTDGFPATAKRIESLIRSPNKAPIKSGFSISPDWFKQFGITKVPAFVSVKPGR 190 Query: 170 -------CSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDLL 204 + YDI+ GN+ + QAL+ +A GD +Q H LL Sbjct: 191 CLPEQPCAATDYDILYGNISLYQALDYLA-DGDAQQNVHPLL 231 >UniRef50_D0Z538 Conjugative transfer protein TrbC n=2 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z538_LISDA Length = 216 Score = 148 bits (374), Expect = 1e-34, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 87/214 (40%), Gaps = 18/214 (8%) Query: 8 LAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQR 67 LA +L+ G + + Q K+ + S + +++ + + + Q Sbjct: 6 LALILLCSVGLPVQAWTEQETHELQRQKEAQAASFFTPDTNTLNIESLLKAKQYKKMAQA 65 Query: 68 SDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNN 127 ++ + ++ Q + + P L F S ++P LK++L + + +P +RG++ Sbjct: 66 LNDEANNRIISTQ--NPNAAPPS-VLIFASLNMPSASLKQLLYQANQYRLPVVIRGVLPG 122 Query: 128 DLKTTAEAVLSLV----KDGATDGVQIDPTLFSQYGIRTVPALVV----FC-------SQ 172 T V LV GV I+P F Q+ I+ V A VV C Sbjct: 123 GFTQTVNMVQGLVAPNHAKKPLGGVSINPIWFKQFNIKQVSAFVVMKEGACQGKPPCDPD 182 Query: 173 GYDIIRGNLRVGQALEKVAATGDCRQVAHDLLAG 206 YD++ GN+ V AL + G +A+ ++A Sbjct: 183 NYDVVYGNVSVFDALTTLGQRGQYADIANRVIAQ 216 >UniRef50_B2LS66 Putative conjugative transfer protein TrbC n=1 Tax=Vibrio tapetis RepID=B2LS66_9VIBR Length = 235 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 21/193 (10%) Query: 30 NRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPR 89 + + Q + Q R +A + NP S LD Q + + P+ Sbjct: 47 DAAIMAQSKTFHDQARAHRSEAQQASKAAGLKLNPQSLSP--LLD--TPSAQTNPEQAPK 102 Query: 90 QGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDG----AT 145 G + FVS ++P+ L ++L ++ GIP +RG++ T + +L+ G Sbjct: 103 -GVMVFVSLTMPDTALTQLLKQSERTGIPLVIRGVLPQGFTATVTRIQTLINQGNRPAIR 161 Query: 146 DGVQIDPTLFSQYGIRTVPALVVF----C-------SQGYDIIRGNLRVGQALEKVAATG 194 G I P F Q+ I+ VP V C YD++ GN+ + QALE +A G Sbjct: 162 SGFSISPDWFRQFDIQQVPTFVSIKPGQCQPKQSCLPTDYDVVTGNISLYQALETLAQ-G 220 Query: 195 DCRQVAHDLLAGK 207 D +Q LL Sbjct: 221 DTQQEVATLLRAL 233 >UniRef50_D0SGX9 Predicted protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SGX9_ACIJO Length = 246 Score = 143 bits (361), Expect = 4e-33, Method: Composition-based stats. Identities = 53/210 (25%), Positives = 93/210 (44%), Gaps = 22/210 (10%) Query: 20 MASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVR- 78 M +ENV + N + K QE + Q K +++ + + N + ++ Sbjct: 38 MLNENVFSENNADWQKAQEKAAEQ--RKAFDKVQMPERNSFPNVQVGQFSNIDVQKIAER 95 Query: 79 -KQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVL 137 K++ + + K G + F SFS+P+ LK+++ +T G NND K TA+ + Sbjct: 96 YKKKVNDEKKTISGVIGFASFSMPDSSLKKLIADTLKVNGTVVFIGFKNNDFKETAKEIR 155 Query: 138 SLVKDGATDGVQIDPTLFSQYGIRTVPALVVF------------C--SQGYDIIRGNLRV 183 L D +QI+P F QY + VP++V+ C + Y + G++ V Sbjct: 156 RL--DIRKGNIQINPNAFKQYKVDVVPSIVMVKANAEENMDEEGCVMPENYSKVTGDISV 213 Query: 184 GQALEKVA--ATGDCRQVAHDLLAGKGDSG 211 ALE +A G+ + +A+D L G Sbjct: 214 EYALEIMAKGEKGELQTLANDYLKQVKRGG 243 >UniRef50_D1RMN4 Type-F conjugative transfer system pilin assembly protein TrbC n=2 Tax=Legionella RepID=D1RMN4_LEGLO Length = 220 Score = 143 bits (360), Expect = 4e-33, Method: Composition-based stats. Identities = 51/182 (28%), Positives = 78/182 (42%), Gaps = 22/182 (12%) Query: 47 KPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQ----ASQDGKPRQGALYFVSFSIPE 102 A V N + +D+++ + + +Q G+ GA+ FVSFS+PE Sbjct: 36 HDSVSQDTLAHWNVASNQSIAQNKTLIDQIIEQSRLGTPVAQKGQTVDGAVLFVSFSMPE 95 Query: 103 EGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATD-----GVQIDPTLFSQ 157 L + E + IP + G++ D K T A L GV +DP F Q Sbjct: 96 SLLFSLSDEAASYKIPVVINGLIEGDFKKTITAFSKLHAKAKESKWVFNGVSVDPLWFEQ 155 Query: 158 YGIRTVPALVV-----------FCSQG-YDIIRGNLRVGQALEKVAATGDCR-QVAHDLL 204 + I VPALVV C + YD++ GN + ++L+ +A GD +VA LL Sbjct: 156 FHITAVPALVVSKRPSSCGQQLLCPEQTYDVVYGNASLKKSLQLIAQKGDSANEVAQALL 215 Query: 205 AG 206 Sbjct: 216 EN 217 >UniRef50_A8QYQ8 TrbC protein n=1 Tax=Fluoribacter dumoffii RepID=A8QYQ8_9GAMM Length = 140 Score = 142 bits (359), Expect = 6e-33, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 63/109 (57%) Query: 94 YFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPT 153 FVSFS+P L+ L E+ IPA L G+ +N +K TA V+ L + + IDPT Sbjct: 25 VFVSFSMPGRLLEETLKESSRLHIPAYLNGLHHNSMKDTALKVMELSQRIPDLNLAIDPT 84 Query: 154 LFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHD 202 LF ++GI+ VPALVV + +D+I G+L + + L +A G+ HD Sbjct: 85 LFERFGIQQVPALVVAEEKKFDVIYGHLTLQEGLSWIAGHGETHFTLHD 133 >UniRef50_Q8D692 Putative uncharacterized protein n=1 Tax=Vibrio vulnificus RepID=Q8D692_VIBVU Length = 232 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 44/185 (23%), Positives = 84/185 (45%), Gaps = 18/185 (9%) Query: 36 QQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDEL-VRKQQASQDGKPRQGALY 94 +Q + + +++ H+ A +Q ++ + + D + + + + P G + Sbjct: 45 EQAQQAIETQQQASHEFIEHARQQAMQWQEKLDPSSLQDIIDIPTPTENPNAAPA-GVMI 103 Query: 95 FVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLV----KDGATDGVQI 150 FVS ++P+ L+ +L ++ + +P +RG++ + TT + SL+ K G I Sbjct: 104 FVSLTMPKSSLQALLKQSEIWQVPLVIRGVLPDGFMTTVNNIQSLLQTNEKKPINSGFAI 163 Query: 151 DPTLFSQYGIRTVPALVVF----------CSQ-GYDIIRGNLRVGQALEKVAATGDCRQV 199 P F + I VP V CS+ YDI++GN+ + ALE +A GD V Sbjct: 164 SPEWFQTFNILEVPTFVAVKPGRCLPKQPCSESDYDIVKGNVSLPNALEHLA-NGDNPDV 222 Query: 200 AHDLL 204 +L Sbjct: 223 VRQVL 227 >UniRef50_B4RLR3 TrbC n=9 Tax=Neisseria RepID=B4RLR3_NEIG2 Length = 251 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 12/183 (6%) Query: 17 GAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDEL 76 G V +N N +NRQ + +L PD ++ + ++ +P+ + + Sbjct: 47 GKVTRVKNPNVGDNRQ-QPEIPDLKGIKHRVPD--VRDYGNAKIKADPMSIAQKYR---- 99 Query: 77 VRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAV 136 Q ++ + + FVSFS+PE LKR+ ET G +RG ++ LK T +A Sbjct: 100 -TASQEARQAAEKADLMVFVSFSMPEASLKRIARETAKAGGVMVIRGFKDDSLKATVKAA 158 Query: 137 LSLVKDGATDGVQIDPTLFSQYGIRTVPALVVF--CSQGYDIIRGNLRVGQALEKVAATG 194 L + I P LF YGI VP V+ G D N +G E VA G Sbjct: 159 EELA--ALQGDMLIHPELFDHYGITEVPVTVIARNSEDGLDGCAVNSELGMCTEHVAVKG 216 Query: 195 DCR 197 D Sbjct: 217 DVS 219 >UniRef50_A9L6J7 Type-F conjugative transfer system pilin assembly protein TrbC n=6 Tax=Shewanella baltica RepID=A9L6J7_SHEB9 Length = 246 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 31/186 (16%) Query: 51 QLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGK-----------------PRQGAL 93 +LKA + ++ P D L + R+ +A G+ G + Sbjct: 57 ELKALSMRERHTLPPLNVDQAALFDKARQFEAQSKGQLDNALSPLLDAKPNPSADANGVM 116 Query: 94 YFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLV---KDGATDGVQI 150 FVS +P L+++L ++ +P +RG++ T + + L+ G I Sbjct: 117 VFVSLGMPATSLQQLLMQSADLQVPLIVRGVLPQGFTATVKQMNHLIDNKGKTIQSGFAI 176 Query: 151 DPTLFSQYGIRTVPALVVF-----------CSQGYDIIRGNLRVGQALEKVAATGDCRQV 199 +P F+Q+GI VPA V S +D+I GN+ + AL +A G V Sbjct: 177 NPQWFTQFGITQVPAFVAVRPNKCQAKQPCSSDDFDVIYGNVSLYDALNLLAQHGSIPDV 236 Query: 200 AHDLLA 205 A LA Sbjct: 237 AAKTLA 242 >UniRef50_Q5WRY4 Putative uncharacterized protein n=1 Tax=Legionella pneumophila str. Lens RepID=Q5WRY4_LEGPL Length = 159 Score = 136 bits (343), Expect = 4e-31, Method: Composition-based stats. Identities = 43/116 (37%), Positives = 65/116 (56%) Query: 94 YFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPT 153 VSFSIPE L+ L E+ IPA L G+ + + TA V++L K + IDPT Sbjct: 44 VLVSFSIPETLLQETLKESAQLNIPAYLNGLYRDSMSETALKVMALSKHIPNLNLAIDPT 103 Query: 154 LFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDLLAGKGD 209 LF ++GI+ VPA++V Q +D+I G+L + + L ++A GD D+ G+ Sbjct: 104 LFERFGIQQVPAVIVDDGQTFDVIYGHLSIQEGLARMAGRGDVDFTPRDIRRVIGE 159 >UniRef50_A5VGS0 Type-F conjugative transfer system pilin assembly protein TrbC n=4 Tax=Sphingomonadaceae RepID=A5VGS0_SPHWW Length = 247 Score = 134 bits (337), Expect = 2e-30, Method: Composition-based stats. Identities = 48/191 (25%), Positives = 74/191 (38%), Gaps = 21/191 (10%) Query: 36 QQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGK--PRQGAL 93 Q + +RE ++ A K + + P D DE+V+ + K + Sbjct: 57 QFREEAVAVREAGTENMRQVAAKDLPKGPDGAID---FDEIVQGAAGNASVKSGEAPQFI 113 Query: 94 YFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLV-KDGATDGVQIDP 152 F S S+P + LK ++ +T G RG NN +K A + +V + V IDP Sbjct: 114 VFASLSMPPQSLKPLIRDTARAGGVVVFRGFPNNSMKEFATRLGQIVERQDEFANVGIDP 173 Query: 153 TLFSQYGIRTVPALVVFCSQ--------------GYDIIRGNLRVGQALEKVA-ATGDCR 197 LF + ++ VP V S YD + GN+ V AL A G Sbjct: 174 RLFRAFNVQAVPTYVAVSSDFDLCAGFSCQTKVPPYDRMTGNVTVEYALSSFADGYGPGA 233 Query: 198 QVAHDLLAGKG 208 +VA L+ Sbjct: 234 RVAAVGLSNMR 244 >UniRef50_B4EQG7 Putative conjugative transfer protein n=2 Tax=Burkholderia RepID=B4EQG7_BURCJ Length = 233 Score = 132 bits (332), Expect = 7e-30, Method: Composition-based stats. Identities = 48/212 (22%), Positives = 86/212 (40%), Gaps = 18/212 (8%) Query: 13 MMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHF 72 ++ N A + + + + E + + P+ ++ A P Sbjct: 24 IIANAAGTVAAMPSDAQISAERARIERERKPMFADPNLG-RSTAGNAFPAIPTPPRAQLD 82 Query: 73 LDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTT 132 + ++ A + ++ L F S S+P E LKR++ + G LRG + LKTT Sbjct: 83 PLAVAQRYAARAQSRKQEELLAFASLSMPAESLKRLVRDVARAGGAVVLRGFKDGSLKTT 142 Query: 133 AEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVF------------C--SQGYDIIR 178 A+ +L D VQ++P F QY I VPA+V+ C + + Sbjct: 143 VSAIQALGVD--ASAVQVNPNAFKQYRITAVPAIVLVKADRALDLDAEGCSLPANFAGVT 200 Query: 179 GNLRVGQALEKVAAT-GDCRQVAHDLLAGKGD 209 G++ V AL ++ D + +A +LA G+ Sbjct: 201 GDVTVAYALREIGRRSSDYQPLADRILASLGE 232 >UniRef50_B6ESY3 Putative uncharacterized protein n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6ESY3_ALISL Length = 255 Score = 131 bits (330), Expect = 1e-29, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 90/222 (40%), Gaps = 33/222 (14%) Query: 9 AALLMMLNGAVMASENVNTPENRQFLKQQEN--------------LSRQLREKPDHQLKA 54 +AL+++ + A N + QQ + R + + K Sbjct: 29 SALVIVTLSSFTAHSNDGYSNEQLRALQQRENDALNTTSPLIGYEVDRAIESSHAMRDKI 88 Query: 55 WAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRH 114 A Q + + +D + + + P G + VS S+P+ L+++L ++ Sbjct: 89 LAMSQQVNQRI-TTDALSEGLYFPEPTTNPNANPT-GIIALVSLSMPDIALQQLLIQSEQ 146 Query: 115 FGIPATLRGMVNNDLKTTAEAVLSLV-----KDGATDGVQIDPTLFSQYGIRTVPALVVF 169 + IP +RG++ T + L+ K G+ I+P F+Q+ I VPA + Sbjct: 147 YQIPLIIRGVLPEGFSATVARINHLLTKDHKKHPINSGIAINPQWFTQFNITQVPAFISI 206 Query: 170 ----CSQ-------GYDIIRGNLRVGQALEKVAATGDCRQVA 200 C+Q +D++ GN+ +G AL + + GD ++ A Sbjct: 207 KEGKCTQKGPCRAEDFDVLYGNISMGDALS-ILSKGDAKENA 247 >UniRef50_A3VN15 Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VN15_9PROT Length = 241 Score = 130 bits (327), Expect = 3e-29, Method: Composition-based stats. Identities = 46/171 (26%), Positives = 72/171 (42%), Gaps = 20/171 (11%) Query: 54 AWAEKQVLENPLQRSD-NHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGET 112 W E + + D + + + A Q+ G L FVSFS+PE+ L++++ + Sbjct: 64 RWGEAAAPSDTTEPVDLDAMVADAGVVSAARQETSGPAGVLVFVSFSMPEQSLRQLVLDA 123 Query: 113 RHFGIPATLRGMVNNDLKTTAEAVLSLV----KDGATDGVQIDPTLFSQYGIRTVPALVV 168 +P L+G V LK TA + +L+ GV IDP F + + VPA + Sbjct: 124 HKAQVPVLLQGFVGGSLKETATRMRALLGADTGQDLLGGVVIDPRAFRIFRVTEVPAFIA 183 Query: 169 F------C--------SQGYDIIRGNLRVGQALEKVAATG-DCRQVAHDLL 204 C +D I GN+ +G AL +A+ G D A L Sbjct: 184 TRAPLPDCDGLDCDAPPPPHDRIAGNMSLGAALSALASEGTDAALQARASL 234 >UniRef50_C9NPU1 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NPU1_9VIBR Length = 193 Score = 128 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 16/133 (12%) Query: 92 ALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKD----GATDG 147 L F+S ++P+ L+ +L ++ + P +RG + TA+ ++ L+ G Sbjct: 60 LLVFISLTMPDASLRSLLKQSTQWQAPLLIRGPLPAGFTATAQRLMELLNAKGALPIRAG 119 Query: 148 VQIDPTLFSQYGIRTVPALVVF----C-------SQGYDIIRGNLRVGQALEKVAATGDC 196 V IDP F ++ +R VP V+ C + I+GN+ + ALE + +T Sbjct: 120 VAIDPDAFHRFHVRDVPTFVLIKSNRCQARWPCGPDDHAKIKGNVSIRTALEAL-STSPL 178 Query: 197 RQVAHDLLAGKGD 209 VA LL + D Sbjct: 179 ADVAETLLEAQRD 191 >UniRef50_Q3IUV8 TrbC, sex pilus assembly and mating pair formation protein n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID=Q3IUV8_RHOS4 Length = 250 Score = 125 bits (315), Expect = 7e-28, Method: Composition-based stats. Identities = 50/206 (24%), Positives = 84/206 (40%), Gaps = 30/206 (14%) Query: 22 SENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQ 81 +E R+ Q ++ + + +A + +V ++ Sbjct: 54 AERRGEALARELTIQPPREGVEIEDLAGIRTRALNDPRVRALLGAPD----------AEE 103 Query: 82 ASQDGKPRQG---ALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLS 138 + + + R G A+ F SFS+P+ L++M+ E + RG VNN + T + Sbjct: 104 VAAETRARYGEARAILFASFSMPDTSLRQMMREATAHDLTVVFRGFVNNSVFDTRARLEE 163 Query: 139 LVKDGATD-GVQIDPTLFSQYGIRTVPALVVFCSQ---------------GYDIIRGNLR 182 + + T IDPTLF ++ IR+VPALVV +D + GN+ Sbjct: 164 VFAEDETGEAFGIDPTLFRRFDIRSVPALVVLAEDLGDCATPACEGDPPPRHDRVSGNVP 223 Query: 183 VGQALEKVAA-TGDCRQVAHDLLAGK 207 + AL +AA G+ VA LL K Sbjct: 224 LETALRVIAAGNGEAASVARSLLEQK 249 >UniRef50_Q5ZTS7 Putative conjugative transfer protein TrbC n=1 Tax=Legionella pneumophila subsp. pneumophila str. Philadelphia 1 RepID=Q5ZTS7_LEGPH Length = 223 Score = 124 bits (310), Expect = 3e-27, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 15/137 (10%) Query: 87 KPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATD 146 K L F+SFS+PE+ LK L + + G +RG+++N K T A+ +L K Sbjct: 86 KKVSQVLVFLSFSMPEKSLKAWLLQCKKSGATPVIRGLIHNSFKETMTAIQTLSKKTG-I 144 Query: 147 GVQIDPTLFSQYGIRTVPALVVF-----CSQG-------YDIIRGNLRVGQALEKVA--A 192 G+Q+DP LF + I VPA+V C YD + G++ + ALEK+ Sbjct: 145 GMQLDPILFKTFDIAMVPAVVYVKDTPACPANMDCKPVSYDSLYGDVSLDYALEKMRGDE 204 Query: 193 TGDCRQVAHDLLAGKGD 209 + + +L +G+ Sbjct: 205 QSEDPVLDQMILRLRGE 221 >UniRef50_C5SIL3 Type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SIL3_9CAUL Length = 243 Score = 123 bits (309), Expect = 3e-27, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 16/127 (12%) Query: 92 ALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQID 151 VS S+P E L+++ + + G +RG V KTT + +L + A GV ID Sbjct: 107 VYVAVSLSMPREALRQLSADAQKAGAVLVIRGFVGGSFKTTRQILLKTFSEEAAAGVLID 166 Query: 152 PTLFSQYGIRTVPALVVF------CSQG----------YDIIRGNLRVGQALEKVAATGD 195 P +F QY I VP+ V C G +D++RGN+ + AL+ +A GD Sbjct: 167 PRVFQQYRIDRVPSFVAANTPVASCEDGGLECARTDVPFDLVRGNIPLATALKVLAEKGD 226 Query: 196 CRQVAHD 202 A Sbjct: 227 AAPRAAR 233 >UniRef50_D2TZZ3 Conjugal transfer pilus assembly protein TrbC (Fragment) n=1 Tax=Arsenophonus nasoniae RepID=D2TZZ3_9ENTR Length = 173 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 38/106 (35%), Positives = 63/106 (59%), Gaps = 4/106 (3%) Query: 83 SQDGKPRQGA----LYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLS 138 +++G P +G YF+S SIPE+ L +L + GI G+++N ++ TA +L+ Sbjct: 55 AEEGMPLEGITQETAYFLSSSIPEKTLVPLLKSAQAKGIAVYFNGLIDNSMEKTARYLLN 114 Query: 139 LVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVG 184 L++ G+Q+DP F YGI VPALV C + +DI+ G++ +G Sbjct: 115 LIQKYQVAGIQVDPLRFDYYGITQVPALVKRCGKDFDIVYGSVALG 160 >UniRef50_A1WDE9 Putative uncharacterized protein n=1 Tax=Acidovorax sp. JS42 RepID=A1WDE9_ACISJ Length = 258 Score = 119 bits (297), Expect = 9e-26, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 78/198 (39%), Gaps = 19/198 (9%) Query: 28 PENRQFLKQQENLSRQLREKPDHQLKAWAEKQ--VLENPLQRSDNHFLDELVRKQQASQD 85 P + ++ + R+ ++ D A P ++ L ++ + Sbjct: 60 PNSADIDREMRRVDRERKQMFDPNNPATKNAANVFPNVPTPERAGIDIEALAKQYEQKAQ 119 Query: 86 GKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGAT 145 + + F SF++P E LKR++ + G LRG NN LK TA A+ L + G Sbjct: 120 ARKMDDLMIFASFTMPAESLKRIVSQANRVGASVVLRGFKNNSLKDTALAIKELGEQG-- 177 Query: 146 DGVQIDPTLFSQYGIRTVPALVVF------------C--SQGYDIIRGNLRVGQALEKVA 191 V ++P F++Y ++ VP +V+ C + + G++ + AL+++ Sbjct: 178 GNVLVNPNAFTKYKVKAVPTMVLAKAATIDQVDNEGCALPDNFVAVAGDVSLDYALDEIV 237 Query: 192 ATG-DCRQVAHDLLAGKG 208 VA L Sbjct: 238 RRAPQFEAVASRYLRQIR 255 >UniRef50_Q58AH5 Sex pilus assembly and mating pair formation protein n=3 Tax=Burkholderiaceae RepID=Q58AH5_RALME Length = 244 Score = 117 bits (293), Expect = 3e-25, Method: Composition-based stats. Identities = 38/164 (23%), Positives = 67/164 (40%), Gaps = 23/164 (14%) Query: 66 QRSDNHFLDELVRKQQASQDGKPRQG------ALYFVSFSIPEEGLKRMLGETRHFGIPA 119 LD+++++ ++ G P + FVSFS+P+ L + + + G Sbjct: 74 PPVRTQSLDDIMQQYAEAKKGGPAPAKQGANDLIIFVSFSMPKPVLTELARQAKETGAVM 133 Query: 120 TLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQ------- 172 +RG + LK T A L + + GA +I P LF + + VP VV ++ Sbjct: 134 VVRGFKDGSLKATKLAALEVNRAGA--PWEIHPDLFKAFKVTAVPTFVVASAEAESVLDD 191 Query: 173 ------GYDIIRGNLRVGQALEKVAATGD--CRQVAHDLLAGKG 208 Y + GN+ V AL+ + ++A + LA Sbjct: 192 GCSPETAYSAVAGNMSVELALDTIRRRAQPTIAKLAENRLAAIR 235 >UniRef50_Q0F373 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F373_9PROT Length = 242 Score = 117 bits (292), Expect = 3e-25, Method: Composition-based stats. Identities = 49/204 (24%), Positives = 82/204 (40%), Gaps = 26/204 (12%) Query: 23 ENVNTPENRQFLKQQENLSRQLREKP-DHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQ 81 + + + +R+ R K A Q S + +E+VR Q Sbjct: 27 KTQQAGSDLPSADDVRDAARRARGKLFQFNPDRVAVPSFPSLTRQPSVHADFNEVVRNAQ 86 Query: 82 ASQDGKPRQ----GALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNN-----DLKTT 132 + G+ Q G L FVSFS+P E LKR++ + LRG+V++ + T Sbjct: 87 KAGLGRDAQRASPGLLVFVSFSMPAESLKRLVRQAEQAHAAILLRGLVSDSSGRPSFRAT 146 Query: 133 AEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVF-------CSQGYD----IIRGNL 181 A+AV + DGV I+P F ++ + VP+ V+ C G+ I G++ Sbjct: 147 ADAV----RRSGVDGVSINPVAFERFHVSNVPSFVLLLEDECPSCGDGFIPRHLKISGDV 202 Query: 182 RVGQALEKVA-ATGDCRQVAHDLL 204 + AL + + + A L Sbjct: 203 SMDYALRAMKTRRPEAQSRADAYL 226 >UniRef50_A8F1T9 Conjugative transfer protein TrbC n=9 Tax=Rickettsia RepID=A8F1T9_RICM5 Length = 155 Score = 115 bits (289), Expect = 7e-25, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 53/128 (41%), Gaps = 13/128 (10%) Query: 67 RSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVN 126 L E+++ + +Q FVS S+P+ LK E G +RG+ N Sbjct: 38 AEQEELLQEIIQPKTYNQ-------IYIFVSLSMPDSALKSYYIEAEQAGARLVIRGLKN 90 Query: 127 NDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVV-FCSQGYDIIRGNLRVGQ 185 + T D IDP LF +Y I +VPA++V +G + G++ + Sbjct: 91 SSFLDTKAK-----ADEINISFDIDPNLFEEYQITSVPAIIVNSEGKGVKRLTGHISLHD 145 Query: 186 ALEKVAAT 193 ALE + Sbjct: 146 ALEIMNKE 153 >UniRef50_C5ANW6 Putative uncharacterized protein n=2 Tax=Burkholderia glumae BGR1 RepID=C5ANW6_BURGB Length = 263 Score = 115 bits (289), Expect = 8e-25, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 78/201 (38%), Gaps = 18/201 (8%) Query: 25 VNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQ 84 +T + + + Q + +Q+R+ + L P + + + + ++ + Sbjct: 63 TDTAIDAEMARIQGDRQQQMRDAAAKAAHDGNDFPNLPTPARPAASADPLAIAKRYEGRM 122 Query: 85 DGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGA 144 + + F SFS+P+ L R++ G RG ++ LK TA + L A Sbjct: 123 QRRVTDSFVAFASFSMPDASLVRLIKTMHIAGGTVVFRGFKDDSLKATAAEMQRLG--VA 180 Query: 145 TDGVQIDPTLFSQYGIRTVPALVVFC---------------SQGYDIIRGNLRVGQALEK 189 + G+ ++P F+QY + VPA VV Q + + G++ G AL + Sbjct: 181 SGGIVVNPKAFTQYRVSRVPAFVVTQGGDAGNQVDSSGCALPQTFVSVSGDVTPGYALRQ 240 Query: 190 VAATGDC-RQVAHDLLAGKGD 209 + A L GD Sbjct: 241 IVDHSPAFAANAGRYLRALGD 261 >UniRef50_A3WDD8 TrbC, sex pilus assembly and mating pair formation protein n=5 Tax=Erythrobacter RepID=A3WDD8_9SPHN Length = 251 Score = 113 bits (283), Expect = 3e-24, Method: Composition-based stats. Identities = 41/176 (23%), Positives = 67/176 (38%), Gaps = 21/176 (11%) Query: 38 ENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQ----ASQDGKPRQGAL 93 + L+ R A + LD ++R Q A+ PR + Sbjct: 59 DTLAEDTRAAQQTAFDNRAGYAETAQATANAGPLDLDGMIRAQADAEVAAMGDTPRF--I 116 Query: 94 YFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDG-VQIDP 152 F S ++PE LK ++ + G LRG D + + ++ DG G + IDP Sbjct: 117 AFASLAMPEPSLKALVRDVSRAGGVTVLRGFPQGDSARFKKRIAAIWSDGDEAGALGIDP 176 Query: 153 TLFSQYGIRTVPALVVFCSQ--------------GYDIIRGNLRVGQALEKVAATG 194 LF + I+ P+ V+ S +D I GN+ V + L+ A+ G Sbjct: 177 RLFRAFDIKVTPSFVMIASDFSPCDGFDCKDVLPPHDRIAGNISVAEVLDTFASGG 232 >UniRef50_A0B4P2 Putative uncharacterized protein n=1 Tax=Burkholderia cenocepacia HI2424 RepID=A0B4P2_BURCH Length = 262 Score = 112 bits (281), Expect = 7e-24, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 18/150 (12%) Query: 76 LVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEA 135 + ++ ++ + + F SFS+P L R++ G RG N+ LK TA Sbjct: 113 VAKRYESRTQRRVTDSFVAFASFSMPAASLVRLVKTMNQAGGTVVFRGFKNDSLKATAAE 172 Query: 136 VLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVF-------------C--SQGYDIIRGN 180 + L A+ G+ ++P F+QY I VPA VV C Y + G+ Sbjct: 173 MQRLG--IASGGIVVNPKAFTQYRIARVPAYVVTRGGDANNQVDSSGCALPASYVSLSGD 230 Query: 181 LRVGQALEKVAATGD-CRQVAHDLLAGKGD 209 + AL ++ +A L GD Sbjct: 231 VTPAYALRQIVDHSPTYGGIAERYLRALGD 260 >UniRef50_Q5NYF4 Similar to plasmid-like sex pilus assembly and mating formation protein trbC n=5 Tax=Betaproteobacteria RepID=Q5NYF4_AZOSE Length = 249 Score = 109 bits (273), Expect = 5e-23, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 86/227 (37%), Gaps = 38/227 (16%) Query: 4 SMKSLAALLMMLNGAVMASENVNTPENRQF---LKQQENLSRQLREKPDHQLKAWAEKQV 60 + +L +++ A ++N + ++Q +S Q E+ + + ++ ++ Sbjct: 7 VLPALPFAVVLAASAQTLAQNPPLVTDADIERVRREQPTISDQDIEQVRQRHRMPSDAEL 66 Query: 61 LENPLQRSDN-------------------HFLDELVRKQQASQDGKPRQGALYFVSFSIP 101 P+ + ++ ++ G L FVS S+P Sbjct: 67 QAAPVPTPPHIDALPTPAARAPIDLDALARGYASQAQEISRAEGLASGPGLLVFVSLSMP 126 Query: 102 EEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIR 161 + L+R++ + LRG + L+TT V L+ D VQIDP F +Y + Sbjct: 127 QPTLQRLIDQAARAQASIVLRGFADGSLRTTVARVQRLIGD-RQVAVQIDPQAFDRYAVT 185 Query: 162 TVPALV--------VFCSQG-------YDIIRGNLRVGQALEKVAAT 193 VPA V V C+ G + G++ + ALE + + Sbjct: 186 RVPAFVLVRDGARPVACAGGSCAPSEIFLRTSGDVSLDYALEYMQRS 232 >UniRef50_C5V0C2 Type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V0C2_9PROT Length = 219 Score = 109 bits (271), Expect = 9e-23, Method: Composition-based stats. Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 12/179 (6%) Query: 21 ASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQ 80 +E NR + E + Q P +L + V +P ++ + ++ Sbjct: 22 GAETDMERSNRILKEVTERVVNQ-YRAPAPRLDNMPQPAVKASPADMAEQFRQSPIAKQP 80 Query: 81 QASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLV 140 + + + FVSFS+P E L R++ ++ G RG + L ++ + L+ Sbjct: 81 PVAPE------LMVFVSFSMPRENLLRIVEQSERTGARLIFRGFTGDKLTDMSKRIADLL 134 Query: 141 KDGATDGVQIDPTLFSQYGIRTVPALVVFCSQ-GYDIIRGNLRVGQALEKVAATGDCRQ 198 + V + P F+Q+ + VPALV+ S G + G QA V TGD Q Sbjct: 135 GSHRVEAV-VHPPAFTQFKVNQVPALVISQSDAGNQLDNG---CAQAERYVKVTGDVSQ 189 >UniRef50_A5CC00 Conjugative transfer protein n=9 Tax=Orientia tsutsugamushi RepID=A5CC00_ORITB Length = 127 Score = 107 bits (266), Expect = 3e-22, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 7/107 (6%) Query: 89 RQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGV 148 +Q FVSFS+ +E LK +++ FG +RG++NN T + L Sbjct: 24 QQKTFIFVSFSMSDEALKSYFNDSQKFGAQLVMRGLINNSFTQTKNKTMELG-----ISF 78 Query: 149 QIDPTLFSQYGIRTVPALVVFCSQGY--DIIRGNLRVGQALEKVAAT 193 IDP+LF QY I VP +V+ + + G++ + ALE + Sbjct: 79 DIDPSLFEQYKIDVVPVIVIDDEKRGLTKKLTGHIPLAIALEIMNEN 125 >UniRef50_Q1N8Z3 Putative uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N8Z3_9SPHN Length = 249 Score = 105 bits (261), Expect = 1e-21, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 68/192 (35%), Gaps = 18/192 (9%) Query: 34 LKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQA--SQDGKPRQG 91 ++ + + Q + H + ++ ++ S DELV Sbjct: 52 KRRDQEMKDQAEQIAQHAMTRISDPRLKGAAGDPSGAIDFDELVSGASEILKGGQGGAPM 111 Query: 92 ALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLV-KDGATDGVQI 150 + F S S+P E LK ++ T G RG N K + +V KD + + Sbjct: 112 FMVFASTSMPAESLKPLINHTAAAGGVVVFRGFPGNSAKQFMAKLHEVVSKDDTNVRIMV 171 Query: 151 DPTLFSQYGIRTVPALVVFCSQ--------------GYDIIRGNLRVGQALEK-VAATGD 195 DP LF + ++ P VV S D + GN+ V ALE+ V G Sbjct: 172 DPRLFRAFNVQVAPTFVVAGSDFEPCDQLDCVSTPPPSDRMAGNVTVRFALERFVEEKGP 231 Query: 196 CRQVAHDLLAGK 207 + A L+ Sbjct: 232 GARTAQVALSNL 243 >UniRef50_C4YZL4 Type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4YZL4_9RICK Length = 120 Score = 103 bits (256), Expect = 5e-21, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%) Query: 93 LYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDP 152 FVSFS+ +E LK E+ +RG+VNN+ T + L L + IDP Sbjct: 24 YIFVSFSMSDEALKAYYRESEELQAILVIRGLVNNNFLDTRQKALDL-----SINFNIDP 78 Query: 153 TLFSQYGIRTVPALVVFCS-QGYDIIRGNLRVGQALEKVAA 192 LF Y + +VP ++ G + G++ + ALE Sbjct: 79 ELFENYHVTSVPVIIEDDKLTGIKKVSGHIPLSAALELFKQ 119 >UniRef50_C4Z006 Putative type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4Z006_9RICK Length = 218 Score = 100 bits (249), Expect = 3e-20, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 79/205 (38%), Gaps = 17/205 (8%) Query: 13 MMLNGAVMASENVNTPENRQFLKQ-QENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNH 71 + + + S V + ++ +F ++ Q + + + + + + + +Q+ +N ++ Sbjct: 16 SVFSTTSLGSFFVVSEKDIEFAEKIQAQVQKIVNKGLKEKYQEY--EQISKNTAAAKNDK 73 Query: 72 FLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKT 131 LD + FVS S+ L+ E + +G G+ K Sbjct: 74 TLD---VADTYAFLNDDNTRLRIFVSSSMSLNLLRSYYKEAQRYGGHLVFNGLPKGSFKE 130 Query: 132 TAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCS-----------QGYDIIRGN 180 + +V+ G++ID FS + + VP +V+ YD I+G Sbjct: 131 LLKLAQEIVEGNDIGGLEIDDEAFSSFNAQHVPMIVLSKEVDSLFDVAGDVTQYDSIQGA 190 Query: 181 LRVGQALEKVAATGDCRQVAHDLLA 205 + + ALE+ A GD + A L Sbjct: 191 VSIKYALEEFATRGDMSKEAKQRLE 215 >UniRef50_A2SNI6 Sex pilus assembly and mating pair formation protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNI6_METPP Length = 228 Score = 98.2 bits (243), Expect = 2e-19, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 23/163 (14%) Query: 67 RSDNHFLDELVRKQQASQDGKPRQGA------LYFVSFSIPEEGLKRMLGETRHFGIPAT 120 L+ELV K ++ G + + FVS S+P+E L + + + G Sbjct: 59 TPTGDNLEELVSKYNSALRGDAPKAVSARGDLVVFVSLSMPKEVLTELSRQAKEMGAMLV 118 Query: 121 LRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFC---------- 170 LRG + + T A + GA +I P LF + + VP +V+ Sbjct: 119 LRGFKDGSVDKTRIAAQEVNPSGA--PWEIHPDLFKAFKVNKVPTIVLANAASGSLDEEG 176 Query: 171 ---SQGYDIIRGNLRVGQALEKVAATG--DCRQVAHDLLAGKG 208 Y + GN+ + AL + G D ++A LA Sbjct: 177 CAPEATYGSVSGNVSLELALNTLRLRGRPDIAKLAELRLADLR 219 >UniRef50_C1SHA7 Type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHA7_9BACT Length = 244 Score = 83.6 bits (205), Expect = 4e-15, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 84/247 (34%), Gaps = 46/247 (18%) Query: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQV 60 MK+ + +L L A E ++ +K+ L + + + KA A Sbjct: 1 MKVILLALFTLCSSFVSAETLKETIDD------IKKSAKPDISLPDNQEMREKAKAFIDT 54 Query: 61 LENPLQRSDNHFLDELVRKQQASQDGK-------PRQGALYFVSFSIPEEGLKRMLGETR 113 + L + + ++ D P + F+S S+PE+ L+ R Sbjct: 55 GYDALMNKVSEYKKQIAESNGYEIDKDETCHSELPDKSLYIFISSSMPEKTLQNYSATAR 114 Query: 114 HF-GIPATLRGMVNN--------DLKTTA---EAVLSLVKDGA--TDGVQIDPTLFSQYG 159 G + G++ + D + + L +D V I+P LF + Sbjct: 115 DLEGSLLVINGVIGSIEQIMPTVDFVARISCGKGLADLTEDTTCDMAKVDINPYLFRAFN 174 Query: 160 IRTVPALV-----------------VFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHD 202 I++VPA V Y I G++ V ALEK + +G VA Sbjct: 175 IKSVPAFVHSSLPYSEVMQKVTLGEPISEDSYTKIYGDVSVQYALEKFSDSG--ITVAKT 232 Query: 203 LLAGKGD 209 +L Sbjct: 233 MLQKLKQ 239 >UniRef50_Q5NX40 Putative uncharacterized protein trbC n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX40_AZOSE Length = 254 Score = 81.3 bits (199), Expect = 2e-14, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 23/165 (13%) Query: 66 QRSDNHFLDELVRKQQ-----ASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPAT 120 D L+ELV++ + + + FVSFS+P + ++ + + G Sbjct: 91 GEKDFSDLNELVKRYETARTSEAAPTNSDGTLMLFVSFSMPPDVIREYSRQAQAAGATLV 150 Query: 121 LRG-MVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVV------FCSQG 173 LRG ++ T E + + G I+P +F+ Y I VPALV+ +G Sbjct: 151 LRGNYKGGTVRRTTE--QAGALNAGGAGWIINPEVFTGYKIDAVPALVLSRDNLNVDDEG 208 Query: 174 ------YDIIRGNLRVGQALEKVAATG---DCRQVAHDLLAGKGD 209 Y + G++ + +LEK++ + + RQ+A LA + Sbjct: 209 CFPVGEYASVFGDISIIGSLEKISQSATKPEIRQLAAKRLAMIKE 253 >UniRef50_C4NVV1 TraW n=9 Tax=Gammaproteobacteria RepID=C4NVV1_ECOLX Length = 421 Score = 79.0 bits (193), Expect = 1e-13, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 82/184 (44%), Gaps = 12/184 (6%) Query: 8 LAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLRE-------KPDHQLKAWAEKQV 60 L AL+ + G A E+ T +++ ++Q + ++++ ++ + H +A AE + Sbjct: 16 LVALMFSVAGGAYAQESPLTEQDKALIEQGKQIAQKAQKMEMPSLLQNQHMDEAQAEAKA 75 Query: 61 LENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGE-TRHFGIPA 119 LQ ++ L E+ RKQ + L F S S+ E+GL +L + Sbjct: 76 FFKQLQTTNPT-LKEMHRKQAE-KGIYSDHRILVFASLSLGEQGLDDVLTAVSGQPDSVI 133 Query: 120 TLRGMVNN-DLKTTAEAVLSLV-KDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDII 177 RG+ +L +A+ +L K + I+PTLF Y I VP +V+ + Sbjct: 134 VFRGIPEGMNLGQGVKAIQALAAKKDPVPNIIINPTLFKTYNITAVPTIVMLEDEPLPGE 193 Query: 178 RGNL 181 + N+ Sbjct: 194 QPNV 197 >UniRef50_Q19NQ8 TrhW n=9 Tax=Enterobacteriaceae RepID=Q19NQ8_ECOK1 Length = 503 Score = 78.6 bits (192), Expect = 1e-13, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 6/156 (3%) Query: 44 LREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEE 103 + KP+ + L + F ++ ++ + G F SFS+P+ Sbjct: 148 VENKPEVMRGQSKNIEKLFGSSGITAADFERKMDSTREEAL--STENGITIFASFSLPDY 205 Query: 104 GLKRMLGETRHFGIPATLRGMVNND--LKTTAEAVLSLVKDGATDG--VQIDPTLFSQYG 159 L+ +L G+ L T A+ ++ G + + IDP FSQY Sbjct: 206 VLEDLLRTASEHKARVVFNGLKKGTTRLPETQAAINQMIVKGKFESPLITIDPDSFSQYQ 265 Query: 160 IRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGD 195 + VP ++ + + G+ V ++A D Sbjct: 266 VTQVPTIISREQARFAKMVGSFNVEFFQRELAKKPD 301 >UniRef50_Q1MY34 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1MY34_9GAMM Length = 246 Score = 77.0 bits (188), Expect = 4e-13, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 55/150 (36%), Gaps = 19/150 (12%) Query: 68 SDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNN 127 D+ D + A L FVSFS+ + + + G L G Sbjct: 95 DDHFNSDTQAEAKDARA---IETNILIFVSFSMDVSDIFSLAKDAHDIGGHVVLNGFKK- 150 Query: 128 DLKTTAEAVLSL-VKDGATDGVQIDPTLFSQYGIRTVPALVV------------FCSQGY 174 DL+TT + + + + IDPTLF ++ +++VP V+ C + Sbjct: 151 DLETTLKIISEMNTRADKPLPFLIDPTLFDRFSVQSVPHYVLPLESVMPCLEKNVCHKPR 210 Query: 175 DI-IRGNLRVGQALEKVAATGDCRQVAHDL 203 I G + + LE +A + V L Sbjct: 211 SIEASGLVPIKYFLE-LAERNENSDVVEGL 239 >UniRef50_A9AU18 Putative uncharacterized protein n=1 Tax=Burkholderia multivorans ATCC 17616 RepID=A9AU18_BURM1 Length = 165 Score = 70.9 bits (172), Expect = 2e-11, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 11/122 (9%) Query: 92 ALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNND--LKTTAEAVLSLVKD---GATD 146 FVS +P + + ++ E L G + L +T + + Sbjct: 32 TYIFVSSRMPLQSIIQVTREASRAHAVIVLTGFAGEEPTLTSTQRYAADINRACCTTQPA 91 Query: 147 GVQIDPTLFSQYGIRTVPALVVF-----CSQGYDIIRGNLRVGQALEKVAATGDCRQVAH 201 +DP L +YG+ P+ V+ + + G++ + QAL+ A A Sbjct: 92 RWIVDPVLTRRYGVTAAPSFVIAHGASENPGEFSKVAGDMSLSQALKFFAQNSRLPS-AR 150 Query: 202 DL 203 D Sbjct: 151 DY 152 >UniRef50_A0R7Q2 Putative uncharacterized protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7Q2_PELPD Length = 316 Score = 70.5 bits (171), Expect = 3e-11, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 67/218 (30%), Gaps = 37/218 (16%) Query: 13 MMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHF 72 M+L E + + +L + + +Q+ P R Sbjct: 96 MVLPKNAFEKEMQAKAAETIAVYRSPEYQAKLARETARIKREMFHEQLEAIPADRGGAKQ 155 Query: 73 LDELVRKQQ-ASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFG----IPATLRGMVNN 127 + L +++ + + F+S S+P E ++ + + +RG + Sbjct: 156 VKALAKQESPKRARLQDDERIYVFISSSMPMETIRNYAVSAGQYNDPKKVVLVMRGFIGG 215 Query: 128 --------DL-------KTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVF--- 169 T D V IDP LF +YGIR VPA V Sbjct: 216 MQKIGPTTSFVADVLKRSATCNLAAGEQCDMVNTNVLIDPILFRRYGIREVPATVYAKGV 275 Query: 170 ------CSQGYD--------IIRGNLRVGQALEKVAAT 193 S+G D + G+ + L K+A + Sbjct: 276 KVNLPEQSEGNDDVVVGSFAVAYGDASLEYNLSKIAGS 313 >UniRef50_B0RKU4 Sex pilus assembly and mating pair formation protein TrbC n=2 Tax=Yersinia RepID=B0RKU4_YEREN Length = 239 Score = 70.1 bits (170), Expect = 5e-11, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 82/230 (35%), Gaps = 50/230 (21%) Query: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQL--REKPDHQLKAWAEK 58 MK + +++ L N+ +N + N ++ + ++ ++AE Sbjct: 1 MKKLLITISLALTA---------NLVHAQNIAISPEMMNAAQSAVDHRVNNKEMNSFAEN 51 Query: 59 --------QVLENPLQRSDNHF----LDELVRKQQASQDGKPRQGALYFVSFSIPEEGLK 106 + + F LD ++ + + + + FVS S+P L+ Sbjct: 52 IASYSKSSEFKQQQQDLQQQVFKTAGLDPDKQQHEERPE-LVKDQLVLFVSSSMPIHTLR 110 Query: 107 RMLGETRHFGIPATLRGMVNN-----DLKTTAEAVLSLVK-------DGATDGVQIDPTL 154 + G LRG V D + +L++ + + V IDP L Sbjct: 111 NYARDLSKVGGVMVLRGAVGGISRIADTMKLSREILAVNQTCDTTSCKMWSTQVLIDPVL 170 Query: 155 FSQYGIRTVPALV--------VFCS------QGYDIIRGNLRVGQALEKV 190 F QY I+ VPAL+ +C + II G+ + + LE + Sbjct: 171 FKQYDIKVVPALIFQPDMNINSYCDGLELMKKAETIIYGDASIAKMLEAM 220 >UniRef50_Q2LU04 Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU04_SYNAS Length = 319 Score = 67.8 bits (164), Expect = 2e-10, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 73/196 (37%), Gaps = 29/196 (14%) Query: 24 NVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQAS 83 N+ PEN + Q+ + L K E ++ E +D + Sbjct: 85 NIEIPENLHKAQGQKEAGKLLEYYQSEAFKRKYEAEI-ERLKGTVFKDTIDSYYGDSNGA 143 Query: 84 QDGKPRQGAL-------YFVSFSIPEEGLKRMLGETRHFGIP---ATLRGMVNN--DLKT 131 + + G L F+S S+P L+ + G P L+G V +K Sbjct: 144 EKDSVKGGTLPGNERIYLFISSSVPIGTLRNYARDLDRLGDPNVFMVLQGFVGGMKRVKP 203 Query: 132 TAEAVLSLVKDGATDGVQ------------IDPTLFSQYGIRTVPALVVFCSQGYDIIRG 179 T + V ++ + A +Q IDP LF +YGI VPA V D+ Sbjct: 204 TMDFVRKIITEDADCDIQKNKCSAYKVKVKIDPLLFRKYGITRVPAAVYVP----DVRIM 259 Query: 180 NLRVGQALEKVAATGD 195 ++ + + +E A TGD Sbjct: 260 DVTLSEGMEGNAKTGD 275 >UniRef50_B3EB54 Type-F conjugative transfer system pilin assembly protein TrbC n=2 Tax=Desulfuromonadales RepID=B3EB54_GEOLS Length = 320 Score = 65.5 bits (158), Expect = 1e-09, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 78/235 (33%), Gaps = 39/235 (16%) Query: 7 SLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLRE---KPDHQLKAWAEKQVLEN 63 S+ L L A +E + P++R ++ +L+ L + QL+ +E + ++ Sbjct: 80 SVPDLANTLAKADQLAERLAIPKSRN-DREMSDLAGTLDSYYHSDEFQLRVLSETERIKT 138 Query: 64 PLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFG---IPAT 120 + K+++ + FVS ++P + ++ G + Sbjct: 139 EVFGDKVTGYYADKAKKESKGKLTNSERIYVFVSSAMPLQTIRNYAASVSRLGDPNVTLV 198 Query: 121 LRGMVNN--------DLKTTAE------AVLSLVKDGATDGVQIDPTLFSQYGIRTVPAL 166 +RG V+ + + + +DP LF +Y I VPA+ Sbjct: 199 MRGFVDGMTKIQPTISFIASVLQRDQSCRPQEGECEMIPTSLAVDPLLFRRYQIDRVPAV 258 Query: 167 VVFCS------------------QGYDIIRGNLRVGQALEKVAATGDCRQVAHDL 203 V Y G+ R+ L+++ + +A L Sbjct: 259 VYARGLKAEDAGLSEGDAKNATIADYHTAYGDARLEYLLDQIQRETGSQSLAALL 313 >UniRef50_B7J843 Pilus assembly protein TraW, putative n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J843_ACIF2 Length = 422 Score = 64.3 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 67/190 (35%), Gaps = 17/190 (8%) Query: 20 MASENVNTPENRQFLKQQENLSRQLREKPDHQLKAW--AEKQVLENPLQRSDNHFLDELV 77 MA + N + + + Q L+ V N ++ ++D + Sbjct: 47 MAVPKSDVQANNILQRYAQQYAPQSASAAQQWLRTRVNGVPVVPPNLHGKALQEYVDHTL 106 Query: 78 RKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFG-----IPATLRGMVNN--DLK 130 ++ + L F+S +P+ L++ E LRG +N L Sbjct: 107 MAKEENAAK-----TLVFISMDMPKAILRKWFAEVADNRHLFETTVFVLRGWPDNPEGLP 161 Query: 131 TTAEAVLSLV-KDGATDGVQIDPTLFSQYGIRTVPALVVFCSQG-YDIIRGNLR-VGQAL 187 T + L+ V+I+P LF+ + + VP ++ G + +I G+ + A+ Sbjct: 162 ETVSKINRLMPSAKKAANVEINPILFTDHKVNIVPVIIHQPGNGAWSVIVGDGDGLQGAI 221 Query: 188 EKVAATGDCR 197 + D Sbjct: 222 RAINQGKDSP 231 >UniRef50_Q1NGS4 Hypothetical cytosolic protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGS4_9SPHN Length = 255 Score = 63.9 bits (154), Expect = 3e-09, Method: Composition-based stats. Identities = 34/176 (19%), Positives = 58/176 (32%), Gaps = 35/176 (19%) Query: 63 NPLQRSDNHFLDELVRKQQASQDGKPRQG-----ALYFVSFSIPEEGLKRMLGETRHFGI 117 + +Q L + A+ + +P L F S S+P L+ + G Sbjct: 77 DSMQARLYQALGLAIPDDPATPEPRPTPANKAWVPLIFASSSMPISTLRNYAAQLEKAGG 136 Query: 118 PATLRGMVN-----NDLKTTAEAVLSL-------VKDGATDGVQIDPTLFSQYGIRTVPA 165 RG+ + + VL L + IDP LF Q+G+ VPA Sbjct: 137 VIAFRGVPGGLSRIGPMARLSARVLRLDPGCEGPACAMRNVQLVIDPILFRQHGVARVPA 196 Query: 166 LVVF--------CSQGYD-------IIRGNLRVGQALEKVAATG---DCRQVAHDL 203 + C + + I+ G+ + +E+ A G + A L Sbjct: 197 FAMVPGDPTLPYCERDEESGPRASHIVYGDAALSGLMEEYARLGGKEEVSDAASRL 252 >UniRef50_A0L2Z3 Putative uncharacterized protein n=1 Tax=Shewanella sp. ANA-3 RepID=A0L2Z3_SHESA Length = 431 Score = 63.2 bits (152), Expect = 6e-09, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 43/116 (37%), Gaps = 11/116 (9%) Query: 77 VRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGI--PATLRGMVN--NDLKTT 132 V +Q+ + +G+ F SF +P LK L + RG+ + L+ Sbjct: 103 VVQQEIAANGE----VFIFASFGMPAYTLKSALRAASQSQVKTTVVFRGLKDESESLRDA 158 Query: 133 AEAVLSLVKD---GATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQ 185 + A+ + + T V IDP LF+ Y + P +V G + Sbjct: 159 SNAIHRAIDEADLDVTPRVIIDPRLFNTYAVEVAPTMVYRNGGKVVTATGLQSLED 214 >UniRef50_C5F051 Putative uncharacterized protein (Fragment) n=1 Tax=Helicobacter pullorum MIT 98-5489 RepID=C5F051_9HELI Length = 285 Score = 62.4 bits (150), Expect = 9e-09, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 66/205 (32%), Gaps = 40/205 (19%) Query: 29 ENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKP 88 E+++ + + + K L E +L + + +Q S K Sbjct: 80 ESKEAERHAKEIKEYSDSKGFKDLVEQNENHLLYDKEIDWGKYVATPQTEQQMQSTQPKN 139 Query: 89 -------RQGALYFVSFSIPEEGLKRMLGETRHFG--IPATLRGMVNNDLKT---TAEAV 136 +S S+P+E + + + LRG+V ND+ T V Sbjct: 140 LNQFLSQNDKIFIVISESMPKETILNYFRTLENVNTDVTFILRGVVGNDISKITPTFNYV 199 Query: 137 LSLVKDGATDG-----------VQIDPTLFSQYGIRTVPALVVF---------------- 169 L+ V I+P + ++ I+ VPA++ Sbjct: 200 RDLLIKDKNGKPDDPKNRFHYQVDINPKVTQKFKIQKVPAVIYIQNYDYSLQEPTELKME 259 Query: 170 -CSQGYDIIRGNLRVGQALEKVAAT 193 ++ Y + G++ + AL ++ Sbjct: 260 NSNERYYVAYGDVGIDYALREINKK 284 >UniRef50_A7H3K1 Putative uncharacterized protein n=2 Tax=Campylobacter RepID=A7H3K1_CAMJD Length = 314 Score = 61.2 bits (147), Expect = 2e-08, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 36/153 (23%) Query: 87 KPRQGALYFVSFSIPEEGLKRMLG--ETRHFGIPATLRGMVNNDLK---TTAEAVLSLVK 141 P + +S S+ + ++ E I LRG+V ND + T + L+ Sbjct: 152 NPNEKIFIIISSSMDKSSIQNYFKLLENVKTDITFVLRGLVGNDARYINPTFSYLQDLLV 211 Query: 142 DGATD------------GVQIDPTLFSQYGIRTVPALVVFCS------------------ 171 + +QI+P + ++ I VPA++ + Sbjct: 212 KDPNNKNKEDKNNFYYYNIQINPKVTRRFNITKVPAVIFIKNYDPIVEDYWKMTNTPADT 271 Query: 172 -QGYDIIRGNLRVGQALEKVAATGDCRQVAHDL 203 + Y + G + AL ++ +A + Sbjct: 272 DEEYFVAYGEASINYALSEINKQAKSDGLARLI 304 >UniRef50_C6YK86 Sex pilus assembly protein n=14 Tax=Gammaproteobacteria RepID=C6YK86_VIBCH Length = 406 Score = 60.9 bits (146), Expect = 3e-08, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 43/120 (35%), Gaps = 6/120 (5%) Query: 87 KPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLS----LVKD 142 K L F S S+ + LK++ E G RG+ KT A+ +V Sbjct: 99 KHNDEWLIFASSSLGDSSLKQLFKEASATGAIVLFRGIPEG--KTLGAAIRDWHTLMVGL 156 Query: 143 GATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHD 202 V+IDP F + + +VPA+ + L++ TG+ + Sbjct: 157 DPVPQVRIDPKAFVHWRVTSVPAIFRIEDDKVTASALGVYSKDWLQRQIETGNTGSLGQR 216 >UniRef50_C0QUV1 Putative uncharacterized protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUV1_PERMH Length = 238 Score = 58.9 bits (141), Expect = 1e-07, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 69/177 (38%), Gaps = 22/177 (12%) Query: 34 LKQQENLSRQLREKPD-HQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQGA 92 LK+ K D + K E L+ ++LD ++ +GKP + Sbjct: 64 LKEVGKFKSLTENKADVSEYKKLGENVNLKLLENIYGKNWLDIRLK-----LEGKPEKKN 118 Query: 93 LYF--VSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQI 150 L F S S+P + +K + ++ + G++ K T + + SL + V++ Sbjct: 119 LIFYLFSTSVPMQTVKNVFLASQKYE-NLEFYGVLRGISKKTWKYLNSLDEAMNNMTVKV 177 Query: 151 DPTLFSQYGIRTVPALVVF-CSQG------------YDIIRGNLRVGQALEKVAATG 194 +P +F VPA V+ C + ++ G++ + A+EK G Sbjct: 178 NPLIFKAVDAEVVPAFVIAECPERPYGIIRSKSCKFKAVLYGDVSLDFAVEKFKEEG 234 >UniRef50_B7XGR9 Putative pilus assembly protein n=2 Tax=Pseudomonas RepID=B7XGR9_PSEPU Length = 412 Score = 55.1 bits (131), Expect = 2e-06, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 61/182 (33%), Gaps = 14/182 (7%) Query: 32 QFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQ- 90 + +++ + R + +W + + +Q D + A + ++ Sbjct: 41 EQVREISRNANAARAESGQDDMSWVSEMAEKAIIQAGDENVQQSDSGLASADGSDREKKH 100 Query: 91 ------GALYFVSFSIPEEGLKRMLGETRHF-GIPATLRGMVNN-DLKTTAEAVLSLVKD 142 L FVS+S+ LK +L G+ RG+ + + + L ++ Sbjct: 101 PLGDGNRTLIFVSWSMGATALKDILLSFDGLPGVGIVFRGIPDGMSMGDAVTKMHLLTQE 160 Query: 143 GAT-DGVQIDPTLFSQYGIRTVPALVVFCSQG--YDIIRGNLRVGQALEKVAA--TGDCR 197 + V +DP F ++ + VP + + G+ V V GD Sbjct: 161 TQSTVSVLLDPLAFQRHSVSAVPTVALEAPNDALIAKAAGSSSVSYIEGAVKEGKRGDLG 220 Query: 198 QV 199 + Sbjct: 221 TI 222 >UniRef50_Q8L272 Pilus biogenesis protein n=1 Tax=Proteus vulgaris RepID=Q8L272_PROVU Length = 416 Score = 50.8 bits (120), Expect = 3e-05, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 53/139 (38%), Gaps = 5/139 (3%) Query: 34 LKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQGAL 93 ++Q + R+ K E V + + + A G Sbjct: 63 KQKQAEYEKLSRDTVASSHKRLGEMPVPKTEHDIITDAVTGAIADSDMADGKQNKVTGDF 122 Query: 94 YFV--SFSIPEEGLKRMLGETR-HFGIPATLRGMVNND--LKTTAEAVLSLVKDGATDGV 148 Y+V S S+ ++ ++ + + + + +RG+ + D L+ ++ G V Sbjct: 123 YYVLLSSSLSDDEIRNIFSQYKDRTDVAFVIRGVNDKDKILQELTHWQQLVLDAGGGATV 182 Query: 149 QIDPTLFSQYGIRTVPALV 167 +DPT+F Y + ++P ++ Sbjct: 183 NLDPTIFKSYNVTSIPTII 201 >UniRef50_D2U0Q6 Conjugative transfer pilus assembly protein TraW n=1 Tax=Arsenophonus nasoniae RepID=D2U0Q6_9ENTR Length = 312 Score = 46.6 bits (109), Expect = 5e-04, Method: Composition-based stats. Identities = 24/154 (15%), Positives = 63/154 (40%), Gaps = 12/154 (7%) Query: 24 NVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQAS 83 N + ++ + +++ + + +E Q + +L+N + D ++R+ Sbjct: 44 NESALKDIERMREAASAQAKKQESNARQTVNKKNQMILDNASKFKDEEA--RILRQMARD 101 Query: 84 QDGKPRQGALY-------FVSFSIPEEGLKRMLGETR-HFGIPATLRGMVNND-LKTTAE 134 +G+ + + VS S+ ++ + ++ + ++G+ + L + Sbjct: 102 GNGENPKKEIIKGDVYYILVSASLDDKEILNIMDMAEDKENVELVVQGVKDKKTLVEEVK 161 Query: 135 AVLSLVK-DGATDGVQIDPTLFSQYGIRTVPALV 167 L+K QIDP +F +Y +TVP ++ Sbjct: 162 HWHELIKSKEKIINFQIDPNIFIKYKAKTVPTII 195 >UniRef50_C1MEJ2 Pilus biogenesis protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MEJ2_9ENTR Length = 437 Score = 45.8 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 25/136 (18%), Positives = 48/136 (35%), Gaps = 5/136 (3%) Query: 37 QENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQG--ALY 94 Q + Q + K E +N + D+ L + ++ G Sbjct: 85 QNVATDQATDTVKDNRKMMGEMPEYKNTDELVDDAVRGALAKSDMTNEKQNKPVGDFIYI 144 Query: 95 FVSFSIPEEGLKRMLGETR-HFGIPATLRGMVNN-DLKTTAEAVLSLVKDGATD-GVQID 151 VS S+ + + +L I ++G + +L L D + V +D Sbjct: 145 LVSASLSDAEITDILKLYDGRTDIALVVQGAKDKKNLLDELTHWQRLSFDSKSSLAVNLD 204 Query: 152 PTLFSQYGIRTVPALV 167 PT+F Y + +VP ++ Sbjct: 205 PTVFKNYNVSSVPTII 220 >UniRef50_B1WUF3 Putative uncharacterized protein n=4 Tax=Chroococcales RepID=B1WUF3_CYAA5 Length = 321 Score = 44.3 bits (103), Expect = 0.003, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 11/109 (10%) Query: 99 SIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQY 158 S+ + + ++ TL + TTA A +L + + P Sbjct: 7 SMVNSAMMNLFKNSKALLTVLTL-----GSVATTASATQALTLKVEVENLS--PLG---- 55 Query: 159 GIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDLLAGK 207 G+ P V F +D G L + LE++A GD ++ D L Sbjct: 56 GVALTPVWVGFHDGSFDSYNGGLSSQRGLEQIAEDGDATTISQDFLNNL 104 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P18473 Periplasmic protein trbC n=41 Tax=root RepID=TRB... 237 2e-61 UniRef50_A4TT00 Conjugative transfer protein n=3 Tax=Enterobacte... 191 1e-47 UniRef50_C8QEB4 Type-F conjugative transfer system pilin assembl... 180 3e-44 UniRef50_B6ICG3 TrbC protein n=1 Tax=Escherichia coli SE11 RepID... 174 2e-42 UniRef50_A4WGT4 Putative uncharacterized protein n=1 Tax=Enterob... 169 4e-41 UniRef50_Q6MB92 Putative F pilus assembly protein trbC n=1 Tax=C... 169 7e-41 UniRef50_A4SUD7 TrbC protein n=1 Tax=Aeromonas salmonicida subsp... 166 6e-40 UniRef50_Q8KNK6 TrbC n=1 Tax=Salmonella enterica subsp. enterica... 164 2e-39 UniRef50_Q4LC38 TrbC protein n=2 Tax=Sodalis glossinidius RepID=... 163 3e-39 UniRef50_B2VB15 Probable F pilus assembly protein TrbC n=1 Tax=E... 162 5e-39 UniRef50_D0Z538 Conjugative transfer protein TrbC n=2 Tax=Photob... 158 1e-37 UniRef50_D0SGX9 Predicted protein n=1 Tax=Acinetobacter johnsoni... 156 5e-37 UniRef50_Q6LW85 Hypothetical conjugative transfer protein trbC n... 153 4e-36 UniRef50_Q7MBM9 Putative conjugative transfer protein TrbC n=3 T... 151 1e-35 UniRef50_B2LS66 Putative conjugative transfer protein TrbC n=1 T... 146 7e-34 UniRef50_B4EQG7 Putative conjugative transfer protein n=2 Tax=Bu... 144 2e-33 UniRef50_B2I3Z6 Putative uncharacterized protein n=1 Tax=Acineto... 144 3e-33 UniRef50_A5KZG3 Putative uncharacterized protein n=1 Tax=Vibrion... 142 5e-33 UniRef50_Q8D692 Putative uncharacterized protein n=1 Tax=Vibrio ... 142 5e-33 UniRef50_D1RMN4 Type-F conjugative transfer system pilin assembl... 142 1e-32 UniRef50_C4Z006 Putative type-F conjugative transfer system pili... 139 7e-32 UniRef50_A1WDE9 Putative uncharacterized protein n=1 Tax=Acidovo... 138 1e-31 UniRef50_B6ESY3 Putative uncharacterized protein n=1 Tax=Aliivib... 137 2e-31 UniRef50_C5ANW6 Putative uncharacterized protein n=2 Tax=Burkhol... 137 2e-31 UniRef50_A5VGS0 Type-F conjugative transfer system pilin assembl... 135 9e-31 UniRef50_Q5NYF4 Similar to plasmid-like sex pilus assembly and m... 135 1e-30 UniRef50_Q5ZTS7 Putative conjugative transfer protein TrbC n=1 T... 134 1e-30 UniRef50_A9L6J7 Type-F conjugative transfer system pilin assembl... 134 2e-30 UniRef50_C1SHA7 Type-F conjugative transfer system pilin assembl... 134 2e-30 UniRef50_A8QYQ8 TrbC protein n=1 Tax=Fluoribacter dumoffii RepID... 132 7e-30 UniRef50_Q3IUV8 TrbC, sex pilus assembly and mating pair formati... 132 8e-30 UniRef50_Q1N8Z3 Putative uncharacterized protein n=1 Tax=Sphingo... 131 2e-29 UniRef50_Q5WRY4 Putative uncharacterized protein n=1 Tax=Legione... 130 4e-29 UniRef50_A3VN15 Putative uncharacterized protein n=1 Tax=Parvula... 129 7e-29 UniRef50_Q0F373 Putative uncharacterized protein n=1 Tax=Maripro... 127 2e-28 UniRef50_A0B4P2 Putative uncharacterized protein n=1 Tax=Burkhol... 126 5e-28 UniRef50_B4RLR3 TrbC n=9 Tax=Neisseria RepID=B4RLR3_NEIG2 124 2e-27 UniRef50_Q58AH5 Sex pilus assembly and mating pair formation pro... 124 3e-27 UniRef50_C9NPU1 Putative uncharacterized protein n=1 Tax=Vibrio ... 122 5e-27 UniRef50_C5SIL3 Type-F conjugative transfer system pilin assembl... 122 1e-26 UniRef50_B3EB54 Type-F conjugative transfer system pilin assembl... 119 4e-26 UniRef50_C5V0C2 Type-F conjugative transfer system pilin assembl... 118 1e-25 UniRef50_A8F1T9 Conjugative transfer protein TrbC n=9 Tax=Ricket... 117 2e-25 UniRef50_A0R7Q2 Putative uncharacterized protein n=1 Tax=Pelobac... 117 4e-25 UniRef50_A3WDD8 TrbC, sex pilus assembly and mating pair formati... 115 1e-24 UniRef50_D2TZZ3 Conjugal transfer pilus assembly protein TrbC (F... 114 2e-24 UniRef50_C5F051 Putative uncharacterized protein (Fragment) n=1 ... 114 2e-24 UniRef50_C0QUV1 Putative uncharacterized protein n=1 Tax=Perseph... 113 4e-24 UniRef50_A2SNI6 Sex pilus assembly and mating pair formation pro... 112 5e-24 UniRef50_C4NVV1 TraW n=9 Tax=Gammaproteobacteria RepID=C4NVV1_ECOLX 112 6e-24 UniRef50_B0RKU4 Sex pilus assembly and mating pair formation pro... 110 3e-23 UniRef50_B7J843 Pilus assembly protein TraW, putative n=1 Tax=Ac... 110 4e-23 UniRef50_A5CC00 Conjugative transfer protein n=9 Tax=Orientia ts... 110 4e-23 UniRef50_Q2LU04 Hypothetical cytosolic protein n=1 Tax=Syntrophu... 109 5e-23 UniRef50_C4YZL4 Type-F conjugative transfer system pilin assembl... 107 2e-22 UniRef50_Q1MY34 Putative uncharacterized protein n=1 Tax=Bermane... 105 7e-22 UniRef50_Q5NX40 Putative uncharacterized protein trbC n=1 Tax=Ar... 105 1e-21 UniRef50_Q19NQ8 TrhW n=9 Tax=Enterobacteriaceae RepID=Q19NQ8_ECOK1 102 8e-21 UniRef50_Q8L272 Pilus biogenesis protein n=1 Tax=Proteus vulgari... 99 7e-20 UniRef50_A9AU18 Putative uncharacterized protein n=1 Tax=Burkhol... 99 7e-20 UniRef50_A7H3K1 Putative uncharacterized protein n=2 Tax=Campylo... 99 9e-20 UniRef50_Q1NGS4 Hypothetical cytosolic protein n=1 Tax=Sphingomo... 97 4e-19 UniRef50_C6YK86 Sex pilus assembly protein n=14 Tax=Gammaproteob... 95 1e-18 UniRef50_B7XGR9 Putative pilus assembly protein n=2 Tax=Pseudomo... 95 1e-18 UniRef50_A0L2Z3 Putative uncharacterized protein n=1 Tax=Shewane... 90 4e-17 UniRef50_D2U0Q6 Conjugative transfer pilus assembly protein TraW... 89 1e-16 UniRef50_C1MEJ2 Pilus biogenesis protein n=1 Tax=Citrobacter sp.... 89 1e-16 Sequences not found previously or not previously below threshold: UniRef50_B1WUF3 Putative uncharacterized protein n=4 Tax=Chrooco... 46 0.001 >UniRef50_P18473 Periplasmic protein trbC n=41 Tax=root RepID=TRBC_ECOLI Length = 212 Score = 237 bits (604), Expect = 2e-61, Method: Composition-based stats. Identities = 212/212 (100%), Positives = 212/212 (100%) Query: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQV 60 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQV Sbjct: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQV 60 Query: 61 LENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPAT 120 LENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPAT Sbjct: 61 LENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPAT 120 Query: 121 LRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGN 180 LRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGN Sbjct: 121 LRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGN 180 Query: 181 LRVGQALEKVAATGDCRQVAHDLLAGKGDSGK 212 LRVGQALEKVAATGDCRQVAHDLLAGKGDSGK Sbjct: 181 LRVGQALEKVAATGDCRQVAHDLLAGKGDSGK 212 >UniRef50_A4TT00 Conjugative transfer protein n=3 Tax=Enterobacteriaceae RepID=A4TT00_YERPP Length = 256 Score = 191 bits (485), Expect = 1e-47, Method: Composition-based stats. Identities = 99/192 (51%), Positives = 134/192 (69%), Gaps = 1/192 (0%) Query: 19 VMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVR 78 A + N +F++QQE+ S+QLR + + L+ E+QV +NPL D F+ EL + Sbjct: 65 CTALASGADEANSEFIRQQESFSQQLRGQDNAPLRQILEQQVRQNPLSADDARFIGELKQ 124 Query: 79 KQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLS 138 +Q+ + KP GALYFVSF+IP+ GLKRML E R + IPATLRGMVNND+KTTA AV++ Sbjct: 125 RQRENLQDKPTHGALYFVSFAIPQAGLKRMLTEARRYDIPATLRGMVNNDMKTTATAVMA 184 Query: 139 LVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQ 198 LV+DG+ GV IDPT F +YGI +VP+LVV+C +D+IRGN+ + QALEKV G+CR Sbjct: 185 LVQDGSASGVAIDPTRFREYGITSVPSLVVYCEASHDVIRGNIHLKQALEKVVEKGECRD 244 Query: 199 VAHDLLAGKGDS 210 A LL KG++ Sbjct: 245 EAQQLL-NKGEA 255 >UniRef50_C8QEB4 Type-F conjugative transfer system pilin assembly protein TrbC n=3 Tax=Pantoea sp. At-9b RepID=C8QEB4_9ENTR Length = 207 Score = 180 bits (456), Expect = 3e-44, Method: Composition-based stats. Identities = 75/213 (35%), Positives = 110/213 (51%), Gaps = 7/213 (3%) Query: 1 MKLSMKSLAALLMMLNGAV-MASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQ 59 MK + + L + A A + V + ++ ++KQQ+ + + Sbjct: 1 MKTFLMTALMLSAVFPCAARTAVQPVVSGDDMAYMKQQQRDLELFKSQLQGM-----NIT 55 Query: 60 VLENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPA 119 + R D + + + A+YFVS IPEEGL ML + R FGIPA Sbjct: 56 LPAAQEGRVAQLQNDIAASQADQNSASRTTPAAIYFVSLGIPEEGLLPMLADARRFGIPA 115 Query: 120 TLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRG 179 TLRG+++ND + TA A+ L K GVQIDPTL+ Q+GI+ VPALVV C +D++ G Sbjct: 116 TLRGLLDNDFRKTASAMFELSKKDKQAGVQIDPTLYQQFGIKAVPALVVTCGGKFDVLYG 175 Query: 180 NLRVGQALEKVAATGDCRQVAHDLLAGKGDSGK 212 +L V QALE+V GDC +A LL G++ + Sbjct: 176 SLPVKQALEEVKQRGDCAGIAAQLLKN-GEAAR 207 >UniRef50_B6ICG3 TrbC protein n=1 Tax=Escherichia coli SE11 RepID=B6ICG3_ECOSE Length = 201 Score = 174 bits (441), Expect = 2e-42, Method: Composition-based stats. Identities = 86/205 (41%), Positives = 119/205 (58%), Gaps = 14/205 (6%) Query: 3 LSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLE 62 +S+ S+A M+ G V AS+ LR++ D + + L+ Sbjct: 5 VSVCSIAMTCMLSPGIVCASQ------------DSAAFIESLRDQSDMLRRQATVPEFLQ 52 Query: 63 NPLQRS-DNHFLDELVRK-QQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPAT 120 P ++ ++ L RK QQAS K ALYF+SFSIPEEGL RML E R GIPA Sbjct: 53 QPAPGKHNDAWIQSLTRKSQQASARSKKTPRALYFLSFSIPEEGLIRMLPEARALGIPAL 112 Query: 121 LRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGN 180 + G+++ND + TAEAV + ++ T GVQIDP F++YGI +VPALVV C + YD+IRGN Sbjct: 113 VNGLIDNDFRKTAEAVFRITREKNTGGVQIDPMQFAKYGITSVPALVVTCGERYDLIRGN 172 Query: 181 LRVGQALEKVAATGDCRQVAHDLLA 205 +R+ ALE+VA G+C VA +L Sbjct: 173 IRLKAALERVAKEGECAPVAEAILR 197 >UniRef50_A4WGT4 Putative uncharacterized protein n=1 Tax=Enterobacter sp. 638 RepID=A4WGT4_ENT38 Length = 206 Score = 169 bits (429), Expect = 4e-41, Method: Composition-based stats. Identities = 79/210 (37%), Positives = 117/210 (55%), Gaps = 10/210 (4%) Query: 1 MKLSMKSLAALLMMLNGAVMA---SENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAE 57 M ++ L ++ GA + + + ++KQQ+ L+++ Q + Sbjct: 1 MHNTLFRALLLSVLFGGAQTVLASEQASVSASDMAWMKQQQQPLDSLKQRLQGQTMSLPA 60 Query: 58 KQVLENPLQRSDNHFLDELVRKQQASQDGKPRQ-GALYFVSFSIPEEGLKRMLGETRHFG 116 +Q Q + +L R+Q + G+ R A+YFVS +P EGL ML E +G Sbjct: 61 EQ------QALISRLQGDLARQQAERESGEKRTFPAMYFVSLGLPREGLLPMLKEANRYG 114 Query: 117 IPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDI 176 +PATLRG+VNNDL+ TA A+ L K+ GVQIDPTL+++Y I T+PALVV C +D+ Sbjct: 115 VPATLRGLVNNDLRQTASAMFELAKEDKNIGVQIDPTLYTEYHITTIPALVVTCPGRFDV 174 Query: 177 IRGNLRVGQALEKVAATGDCRQVAHDLLAG 206 IRG+L + QALEKVA +GDC A +L Sbjct: 175 IRGSLPLKQALEKVAESGDCAATAKQILED 204 >UniRef50_Q6MB92 Putative F pilus assembly protein trbC n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MB92_PARUW Length = 198 Score = 169 bits (427), Expect = 7e-41, Method: Composition-based stats. Identities = 56/201 (27%), Positives = 92/201 (45%), Gaps = 4/201 (1%) Query: 13 MMLNGAVMASENVNTPENRQFLKQQENLSRQL-REKPDHQLKAWAEKQVLENPLQRSDNH 71 M+LNG + E + + +LKQ + + + DH + A + L NPL+ + Sbjct: 1 MLLNGGLWGEEMQHFALDSNWLKQAQQVDEKAVHWLKDHLKERLASENFLRNPLEEKGSQ 60 Query: 72 FLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKT 131 + Q A + K F+SFS+ + ++ E G LRG+ N K Sbjct: 61 L--ATTQCQSAGMEVKEESPLYVFMSFSLDDRLWVQLSQELEKLGGIFVLRGLPQNSFKE 118 Query: 132 TAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVA 191 A + +L + G +QI P LF ++ I+ VP + V + YD I GNL + ALEK++ Sbjct: 119 LANRIFTLQEQGVRVPIQIHPQLFQRFDIQLVPTIAVTEGEQYDKISGNLSIQGALEKMS 178 Query: 192 ATGDCRQVAHDLLAGKGDSGK 212 G+ ++ A LL + K Sbjct: 179 LYGETQR-AKFLLQQWKEQQK 198 >UniRef50_A4SUD7 TrbC protein n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SUD7_AERS4 Length = 202 Score = 166 bits (419), Expect = 6e-40, Method: Composition-based stats. Identities = 75/161 (46%), Positives = 96/161 (59%), Gaps = 1/161 (0%) Query: 47 KPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQ-ASQDGKPRQGALYFVSFSIPEEGL 105 P+ +A A + + ++L R++ + GKP A YFVSFSIPEEGL Sbjct: 40 SPEQMQQATALGHQANQRQLPENTEWANQLARQRDLQTPQGKPTPQAFYFVSFSIPEEGL 99 Query: 106 KRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPA 165 KR++ + FGIPATLRGMV D++ TA AVL LV + GVQIDP F YGI VPA Sbjct: 100 KRLILDADAFGIPATLRGMVKGDMRETANAVLRLVNEDKRGGVQIDPKSFGTYGINAVPA 159 Query: 166 LVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDLLAG 206 LVV C+ YD I GNL + +AL K+A +GDC A +LA Sbjct: 160 LVVTCNGQYDRIAGNLALREALTKIAESGDCADTAKAILAA 200 >UniRef50_Q8KNK6 TrbC n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=Q8KNK6_SALTI Length = 203 Score = 164 bits (415), Expect = 2e-39, Method: Composition-based stats. Identities = 77/213 (36%), Positives = 109/213 (51%), Gaps = 20/213 (9%) Query: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQV 60 MK + SLA LL GA MAS++ ENRQF+ Q L RQ + +A + Sbjct: 1 MKRVLISLALLLTC--GAGMASDHT---ENRQFIHDQLQLDRQ-------RFRALQTPEF 48 Query: 61 LENP--LQRSDNHFLDELVRKQQASQDG--KPRQGALYFVSFSIPEEGLKRMLGETRHFG 116 L+ P + D FLD + + + +P AL FVSFS+P + LK+ + + Sbjct: 49 LQQPRPVAPQDQAFLDSQASQFRQAMQPGERPVDAALVFVSFSMPPDELKQRVKDAAELN 108 Query: 117 IPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFC---SQG 173 IP +RGMVN D++TTA A S ++ G T F +Y I VP L+V C Sbjct: 109 IPVVIRGMVNGDMRTTANAGRSGEREQYRRGTDRSNT-FRKYNITAVPVLIVACGNQGDT 167 Query: 174 YDIIRGNLRVGQALEKVAATGDCRQVAHDLLAG 206 D ++G+L + QAL++VA GDC A +LL G Sbjct: 168 VDRLQGDLTLHQALKRVAEEGDCADTARNLLRG 200 >UniRef50_Q4LC38 TrbC protein n=2 Tax=Sodalis glossinidius RepID=Q4LC38_SODGL Length = 203 Score = 163 bits (413), Expect = 3e-39, Method: Composition-based stats. Identities = 89/177 (50%), Positives = 115/177 (64%), Gaps = 6/177 (3%) Query: 29 ENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGK- 87 R +L++QE S L + A+ QV PL D F+D L K + + DGK Sbjct: 25 AERAWLREQERRSADLH--VATERPAFLRPQV---PLAPDDQRFIDRLAEKSRQAGDGKQ 79 Query: 88 PRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDG 147 P + A+YFVSFS+P EGL ML ETR FGIPATLRGMVNND++ T + V++LVK+G DG Sbjct: 80 PAENAVYFVSFSMPLEGLAAMLQETRRFGIPATLRGMVNNDMRETVQRVMALVKNGGADG 139 Query: 148 VQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDLL 204 VQIDP F +GI++VPALVV C +G+D+IRGNL + L ++A GDC VA LL Sbjct: 140 VQIDPQPFHAFGIQSVPALVVQCERGFDVIRGNLHIEDGLRRIANDGDCAPVAQALL 196 >UniRef50_B2VB15 Probable F pilus assembly protein TrbC n=1 Tax=Erwinia tasmaniensis RepID=B2VB15_ERWT9 Length = 172 Score = 162 bits (411), Expect = 5e-39, Method: Composition-based stats. Identities = 60/178 (33%), Positives = 96/178 (53%), Gaps = 6/178 (3%) Query: 31 RQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQ 90 F+KQ++ + +EK + ++ D + E+ +Q+ + + Sbjct: 1 MDFMKQKQAELKDFKEKLSGM-----NINIPQSQQSLVDKNSA-EITSQQKQAVEENQEP 54 Query: 91 GALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQI 150 +YF+SFSIP GL M+ + + +GI T+RG+VNND + TA+ L K+ G I Sbjct: 55 KFIYFLSFSIPNVGLLSMVNDAKKYGITPTMRGLVNNDFRETAKKSFELSKEDKDFGFII 114 Query: 151 DPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDLLAGKG 208 DP LF YGI VPA+V+ C + +D++ G+L V +AL KVA GDC ++A +LA Sbjct: 115 DPFLFRDYGINAVPAMVITCGEKHDLVYGSLPVKEALGKVAREGDCSEIAKKILAADK 172 >UniRef50_D0Z538 Conjugative transfer protein TrbC n=2 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z538_LISDA Length = 216 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 84/214 (39%), Gaps = 18/214 (8%) Query: 8 LAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQR 67 LA +L+ G + + Q K+ + S + +++ + + + Q Sbjct: 6 LALILLCSVGLPVQAWTEQETHELQRQKEAQAASFFTPDTNTLNIESLLKAKQYKKMAQA 65 Query: 68 SDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNN 127 ++ + ++ Q + L F S ++P LK++L + + +P +RG++ Sbjct: 66 LNDEANNRIISTQNPNA---APPSVLIFASLNMPSASLKQLLYQANQYRLPVVIRGVLPG 122 Query: 128 DLKTTAEAVLSLV----KDGATDGVQIDPTLFSQYGIRTVPALVVF-----------CSQ 172 T V LV GV I+P F Q+ I+ V A VV Sbjct: 123 GFTQTVNMVQGLVAPNHAKKPLGGVSINPIWFKQFNIKQVSAFVVMKEGACQGKPPCDPD 182 Query: 173 GYDIIRGNLRVGQALEKVAATGDCRQVAHDLLAG 206 YD++ GN+ V AL + G +A+ ++A Sbjct: 183 NYDVVYGNVSVFDALTTLGQRGQYADIANRVIAQ 216 >UniRef50_D0SGX9 Predicted protein n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SGX9_ACIJO Length = 246 Score = 156 bits (394), Expect = 5e-37, Method: Composition-based stats. Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 22/210 (10%) Query: 20 MASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRK 79 M +ENV + N + K QE + Q K +++ + + N + ++ + Sbjct: 38 MLNENVFSENNADWQKAQEKAAEQ--RKAFDKVQMPERNSFPNVQVGQFSNIDVQKIAER 95 Query: 80 QQA--SQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVL 137 + + + K G + F SFS+P+ LK+++ +T G NND K TA+ + Sbjct: 96 YKKKVNDEKKTISGVIGFASFSMPDSSLKKLIADTLKVNGTVVFIGFKNNDFKETAKEIR 155 Query: 138 SLVKDGATDGVQIDPTLFSQYGIRTVPALVVFC--------------SQGYDIIRGNLRV 183 L D +QI+P F QY + VP++V+ + Y + G++ V Sbjct: 156 RL--DIRKGNIQINPNAFKQYKVDVVPSIVMVKANAEENMDEEGCVMPENYSKVTGDISV 213 Query: 184 GQALEKVA--ATGDCRQVAHDLLAGKGDSG 211 ALE +A G+ + +A+D L G Sbjct: 214 EYALEIMAKGEKGELQTLANDYLKQVKRGG 243 >UniRef50_Q6LW85 Hypothetical conjugative transfer protein trbC n=1 Tax=Photobacterium profundum RepID=Q6LW85_PHOPR Length = 234 Score = 153 bits (386), Expect = 4e-36, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 95/221 (42%), Gaps = 18/221 (8%) Query: 6 KSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREK-PDHQLKA-WAEKQVLEN 63 + LL LN + A+ + + QQ ++ Q E P L A W + E Sbjct: 14 IAGLILLSALNCNLTAANTLGYSQTELKALQQREIAIQAPEHAPTLDLDALWQNAKQFET 73 Query: 64 PLQRSDNHFLDELVRKQQASQDGKPR-QGALYFVSFSIPEEGLKRMLGETRHFGIPATLR 122 ++ + + L ++++ + +G + F S ++P LK+++ ++ +P +R Sbjct: 74 DMRTTQHDALSPILKQANIGDNPNSAAKGVIIFASLTMPSTALKQLMMQSSDLQVPIIIR 133 Query: 123 GMVNNDLKTTAEAVLSLV----KDGATDGVQIDPTLFSQYGIRTVPALVVFCSQ------ 172 G++ T A+ SL+ + G+ I+P F Q GI+ VPA V Sbjct: 134 GVLPQGFPATVAAIQSLIHSEDDEVINSGMAINPLWFKQLGIQRVPAFAVIKPGACLPQQ 193 Query: 173 -----GYDIIRGNLRVGQALEKVAATGDCRQVAHDLLAGKG 208 +D++ GN+ + AL +A GD +A +L+ + Sbjct: 194 PCQDSDFDVLVGNVSLYDALATLARDGDVPNIAQQVLSRRK 234 >UniRef50_Q7MBM9 Putative conjugative transfer protein TrbC n=3 Tax=Vibrionales RepID=Q7MBM9_VIBVY Length = 237 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 58/221 (26%), Positives = 102/221 (46%), Gaps = 20/221 (9%) Query: 3 LSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLR-EKPDHQLKAWAEKQVL 61 S+ L ++ + + A E + Q L QQ + + R ++ +Q +A+ ++ + Sbjct: 12 RSLLFLCLVVSLPSQAYTEEELKAFAKLEQELSQQSSATHSFRLDQVQNQARAYQQEALD 71 Query: 62 ENP--LQRSDNHFLDELVR-KQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIP 118 + L L+ ++ + +G + FVS ++PE LK++L ++ H G+P Sbjct: 72 ASRKIQALVKEESLSPLLGIQKPTRNPDQAPKGVMVFVSLTMPENALKQLLMQSEHLGVP 131 Query: 119 ATLRGMVNNDLKTTAEAVLSLV----KDGATDGVQIDPTLFSQYGIRTVPALVVFCSQ-- 172 +RG++ + TA+ + SL+ K G I P F Q+GI VPA V Sbjct: 132 LVIRGVLTDGFPATAKRIESLIRSPNKAPIKSGFSISPDWFKQFGITKVPAFVSVKPGRC 191 Query: 173 ---------GYDIIRGNLRVGQALEKVAATGDCRQVAHDLL 204 YDI+ GN+ + QAL+ +A GD +Q H LL Sbjct: 192 LPEQPCAATDYDILYGNISLYQALDYLAD-GDAQQNVHPLL 231 >UniRef50_B2LS66 Putative conjugative transfer protein TrbC n=1 Tax=Vibrio tapetis RepID=B2LS66_9VIBR Length = 235 Score = 146 bits (367), Expect = 7e-34, Method: Composition-based stats. Identities = 47/199 (23%), Positives = 78/199 (39%), Gaps = 21/199 (10%) Query: 24 NVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQAS 83 + + + Q + Q R +A + NP S Q + Sbjct: 41 RLAERPDAAIMAQSKTFHDQARAHRSEAQQASKAAGLKLNPQSLSPLLD----TPSAQTN 96 Query: 84 QDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDG 143 + P +G + FVS ++P+ L ++L ++ GIP +RG++ T + +L+ G Sbjct: 97 PEQAP-KGVMVFVSLTMPDTALTQLLKQSERTGIPLVIRGVLPQGFTATVTRIQTLINQG 155 Query: 144 ----ATDGVQIDPTLFSQYGIRTVPALVVFCSQ-----------GYDIIRGNLRVGQALE 188 G I P F Q+ I+ VP V YD++ GN+ + QALE Sbjct: 156 NRPAIRSGFSISPDWFRQFDIQQVPTFVSIKPGQCQPKQSCLPTDYDVVTGNISLYQALE 215 Query: 189 KVAATGDCRQVAHDLLAGK 207 +A GD +Q LL Sbjct: 216 TLAQ-GDTQQEVATLLRAL 233 >UniRef50_B4EQG7 Putative conjugative transfer protein n=2 Tax=Burkholderia RepID=B4EQG7_BURCJ Length = 233 Score = 144 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 47/214 (21%), Positives = 85/214 (39%), Gaps = 18/214 (8%) Query: 11 LLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDN 70 ++ N A + + + + E + + P+ ++ A P Sbjct: 22 ASIIANAAGTVAAMPSDAQISAERARIERERKPMFADPNLG-RSTAGNAFPAIPTPPRAQ 80 Query: 71 HFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLK 130 + ++ A + ++ L F S S+P E LKR++ + G LRG + LK Sbjct: 81 LDPLAVAQRYAARAQSRKQEELLAFASLSMPAESLKRLVRDVARAGGAVVLRGFKDGSLK 140 Query: 131 TTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFC--------------SQGYDI 176 TT A+ +L D VQ++P F QY I VPA+V+ + Sbjct: 141 TTVSAIQALGVD--ASAVQVNPNAFKQYRITAVPAIVLVKADRALDLDAEGCSLPANFAG 198 Query: 177 IRGNLRVGQALEKVAAT-GDCRQVAHDLLAGKGD 209 + G++ V AL ++ D + +A +LA G+ Sbjct: 199 VTGDVTVAYALREIGRRSSDYQPLADRILASLGE 232 >UniRef50_B2I3Z6 Putative uncharacterized protein n=1 Tax=Acinetobacter baumannii ACICU RepID=B2I3Z6_ACIBC Length = 235 Score = 144 bits (362), Expect = 3e-33, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 101/243 (41%), Gaps = 39/243 (16%) Query: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQL---KAWAE 57 MK + + LL + + P ++ K+ + + Q +K D ++ KA + Sbjct: 1 MKKLILASICLLSCNVHSA------DFPSEQEIKKEMDKVKNQTFKKSDWEMAQEKARKQ 54 Query: 58 KQVLENPLQRSDN------------HFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGL 105 ++ ++ R +N + D R ++ +++ K G L F S S+P++ L Sbjct: 55 IEIFKSVEARPNNFPNINVQKPNGINLDDIAARYKRKAENKKNVDGILAFASLSMPKDAL 114 Query: 106 KRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPA 165 +++ + G RG + + A+A+ + + +QI+P F QY + +VPA Sbjct: 115 NKLVTDVTKAGGVVVFRGFKDGNYMEMAKAISQIGVK--SANIQINPNAFKQYRVDSVPA 172 Query: 166 LVVFC--------------SQGYDIIRGNLRVGQALEKV--AATGDCRQVAHDLLAGKGD 209 +V+ + + I G++ + ALE++ T + Q+A L Sbjct: 173 IVLVKPRAEENLDEEGCVLPENHSKITGDISLEYALEQMEKKETAELSQIAKRYLTFLKG 232 Query: 210 SGK 212 + + Sbjct: 233 ANQ 235 >UniRef50_A5KZG3 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KZG3_9GAMM Length = 228 Score = 142 bits (359), Expect = 5e-33, Method: Composition-based stats. Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 19/183 (10%) Query: 36 QQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQGALYF 95 Q L+ L H+ +A + Q L+N LQ S L ++ Q + + K QG + F Sbjct: 46 HQSELTTLLERGQQHKQEALSMNQHLDNALQDSP---LASVLGVPQENPN-KKAQGVMVF 101 Query: 96 VSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVK-----DGATDGVQI 150 VS S+P+ LK++L +++ + +P +RG++ + T ++ L++ + G I Sbjct: 102 VSLSMPDNALKQLLKQSQQYQVPLVIRGVLPEGMVPTTSRIMHLLEASDEGEAIEGGFAI 161 Query: 151 DPTLFSQYGIRTVPALVVF--------CSQG-YDIIRGNLRVGQALEKVAATGDCRQVAH 201 P F Q+ I VP V C + YD++ GNL + AL + + GD +A Sbjct: 162 SPQWFRQFNITHVPVFVAIGDACNEASCPKNAYDVVHGNLSLPNAL-TILSQGDVGHIAK 220 Query: 202 DLL 204 +L Sbjct: 221 QVL 223 >UniRef50_Q8D692 Putative uncharacterized protein n=1 Tax=Vibrio vulnificus RepID=Q8D692_VIBVU Length = 232 Score = 142 bits (359), Expect = 5e-33, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 18/190 (9%) Query: 36 QQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDEL-VRKQQASQDGKPRQGALY 94 +Q + + +++ H+ A +Q ++ + + D + + + + P G + Sbjct: 45 EQAQQAIETQQQASHEFIEHARQQAMQWQEKLDPSSLQDIIDIPTPTENPNAAPA-GVMI 103 Query: 95 FVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLV----KDGATDGVQI 150 FVS ++P+ L+ +L ++ + +P +RG++ + TT + SL+ K G I Sbjct: 104 FVSLTMPKSSLQALLKQSEIWQVPLVIRGVLPDGFMTTVNNIQSLLQTNEKKPINSGFAI 163 Query: 151 DPTLFSQYGIRTVPALVVFCSQ-----------GYDIIRGNLRVGQALEKVAATGDCRQV 199 P F + I VP V YDI++GN+ + ALE +A GD V Sbjct: 164 SPEWFQTFNILEVPTFVAVKPGRCLPKQPCSESDYDIVKGNVSLPNALEHLA-NGDNPDV 222 Query: 200 AHDLLAGKGD 209 +L Sbjct: 223 VRQVLQRIKR 232 >UniRef50_D1RMN4 Type-F conjugative transfer system pilin assembly protein TrbC n=2 Tax=Legionella RepID=D1RMN4_LEGLO Length = 220 Score = 142 bits (357), Expect = 1e-32, Method: Composition-based stats. Identities = 53/205 (25%), Positives = 85/205 (41%), Gaps = 24/205 (11%) Query: 24 NVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQ-- 81 + FL + + + + A V N + +D+++ + + Sbjct: 15 TSSHANVNDFLNEASAIGKTAHDSVSQ--DTLAHWNVASNQSIAQNKTLIDQIIEQSRLG 72 Query: 82 --ASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSL 139 +Q G+ GA+ FVSFS+PE L + E + IP + G++ D K T A L Sbjct: 73 TPVAQKGQTVDGAVLFVSFSMPESLLFSLSDEAASYKIPVVINGLIEGDFKKTITAFSKL 132 Query: 140 VKDGATD-----GVQIDPTLFSQYGIRTVPALVVF-----------CSQG-YDIIRGNLR 182 GV +DP F Q+ I VPALVV C + YD++ GN Sbjct: 133 HAKAKESKWVFNGVSVDPLWFEQFHITAVPALVVSKRPSSCGQQLLCPEQTYDVVYGNAS 192 Query: 183 VGQALEKVAATGDCR-QVAHDLLAG 206 + ++L+ +A GD +VA LL Sbjct: 193 LKKSLQLIAQKGDSANEVAQALLEN 217 >UniRef50_C4Z006 Putative type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4Z006_9RICK Length = 218 Score = 139 bits (350), Expect = 7e-32, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 79/205 (38%), Gaps = 17/205 (8%) Query: 13 MMLNGAVMASENVNTPENRQFLKQ-QENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNH 71 + + + S V + ++ +F ++ Q + + + + + + + +Q+ +N ++ Sbjct: 16 SVFSTTSLGSFFVVSEKDIEFAEKIQAQVQKIVNKGLKEKYQEY--EQISKNTAAAKNDK 73 Query: 72 FLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKT 131 LD + FVS S+ L+ E + +G G+ K Sbjct: 74 TLD---VADTYAFLNDDNTRLRIFVSSSMSLNLLRSYYKEAQRYGGHLVFNGLPKGSFKE 130 Query: 132 TAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCS-----------QGYDIIRGN 180 + +V+ G++ID FS + + VP +V+ YD I+G Sbjct: 131 LLKLAQEIVEGNDIGGLEIDDEAFSSFNAQHVPMIVLSKEVDSLFDVAGDVTQYDSIQGA 190 Query: 181 LRVGQALEKVAATGDCRQVAHDLLA 205 + + ALE+ A GD + A L Sbjct: 191 VSIKYALEEFATRGDMSKEAKQRLE 215 >UniRef50_A1WDE9 Putative uncharacterized protein n=1 Tax=Acidovorax sp. JS42 RepID=A1WDE9_ACISJ Length = 258 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 40/204 (19%), Positives = 79/204 (38%), Gaps = 19/204 (9%) Query: 22 SENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQ--VLENPLQRSDNHFLDELVRK 79 ++ P + ++ + R+ ++ D A P ++ L ++ Sbjct: 54 AKKGAMPNSADIDREMRRVDRERKQMFDPNNPATKNAANVFPNVPTPERAGIDIEALAKQ 113 Query: 80 QQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSL 139 + + + F SF++P E LKR++ + G LRG NN LK TA A+ L Sbjct: 114 YEQKAQARKMDDLMIFASFTMPAESLKRIVSQANRVGASVVLRGFKNNSLKDTALAIKEL 173 Query: 140 VKDGATDGVQIDPTLFSQYGIRTVPALVVFC--------------SQGYDIIRGNLRVGQ 185 + G V ++P F++Y ++ VP +V+ + + G++ + Sbjct: 174 GEQG--GNVLVNPNAFTKYKVKAVPTMVLAKAATIDQVDNEGCALPDNFVAVAGDVSLDY 231 Query: 186 ALEKVAATGD-CRQVAHDLLAGKG 208 AL+++ VA L Sbjct: 232 ALDEIVRRAPQFEAVASRYLRQIR 255 >UniRef50_B6ESY3 Putative uncharacterized protein n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6ESY3_ALISL Length = 255 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 87/222 (39%), Gaps = 33/222 (14%) Query: 9 AALLMMLNGAVMASENVNTPENRQFLKQQEN--------------LSRQLREKPDHQLKA 54 +AL+++ + A N + QQ + R + + K Sbjct: 29 SALVIVTLSSFTAHSNDGYSNEQLRALQQRENDALNTTSPLIGYEVDRAIESSHAMRDKI 88 Query: 55 WAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRH 114 A Q + + +D + + + P G + VS S+P+ L+++L ++ Sbjct: 89 LAMSQQVNQRI-TTDALSEGLYFPEPTTNPNANPT-GIIALVSLSMPDIALQQLLIQSEQ 146 Query: 115 FGIPATLRGMVNNDLKTTAEAVLSLVKDG-----ATDGVQIDPTLFSQYGIRTVPALVVF 169 + IP +RG++ T + L+ G+ I+P F+Q+ I VPA + Sbjct: 147 YQIPLIIRGVLPEGFSATVARINHLLTKDHKKHPINSGIAINPQWFTQFNITQVPAFISI 206 Query: 170 CS-----------QGYDIIRGNLRVGQALEKVAATGDCRQVA 200 + +D++ GN+ +G AL + + GD ++ A Sbjct: 207 KEGKCTQKGPCRAEDFDVLYGNISMGDALS-ILSKGDAKENA 247 >UniRef50_C5ANW6 Putative uncharacterized protein n=2 Tax=Burkholderia glumae BGR1 RepID=C5ANW6_BURGB Length = 263 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 78/205 (38%), Gaps = 18/205 (8%) Query: 21 ASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQ 80 + +T + + + Q + +Q+R+ + L P + + + + ++ Sbjct: 59 GAMPTDTAIDAEMARIQGDRQQQMRDAAAKAAHDGNDFPNLPTPARPAASADPLAIAKRY 118 Query: 81 QASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLV 140 + + + F SFS+P+ L R++ G RG ++ LK TA + L Sbjct: 119 EGRMQRRVTDSFVAFASFSMPDASLVRLIKTMHIAGGTVVFRGFKDDSLKATAAEMQRLG 178 Query: 141 KDGATDGVQIDPTLFSQYGIRTVPALVVFC---------------SQGYDIIRGNLRVGQ 185 + G+ ++P F+QY + VPA VV Q + + G++ G Sbjct: 179 VA--SGGIVVNPKAFTQYRVSRVPAFVVTQGGDAGNQVDSSGCALPQTFVSVSGDVTPGY 236 Query: 186 ALEKVAATGDC-RQVAHDLLAGKGD 209 AL ++ A L GD Sbjct: 237 ALRQIVDHSPAFAANAGRYLRALGD 261 >UniRef50_A5VGS0 Type-F conjugative transfer system pilin assembly protein TrbC n=4 Tax=Sphingomonadaceae RepID=A5VGS0_SPHWW Length = 247 Score = 135 bits (340), Expect = 9e-31, Method: Composition-based stats. Identities = 48/196 (24%), Positives = 75/196 (38%), Gaps = 21/196 (10%) Query: 31 RQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGK--P 88 + Q + +RE ++ A K + + P D DE+V+ + K Sbjct: 52 KDRGDQFREEAVAVREAGTENMRQVAAKDLPKGPDGAID---FDEIVQGAAGNASVKSGE 108 Query: 89 RQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLV-KDGATDG 147 + F S S+P + LK ++ +T G RG NN +K A + +V + Sbjct: 109 APQFIVFASLSMPPQSLKPLIRDTARAGGVVVFRGFPNNSMKEFATRLGQIVERQDEFAN 168 Query: 148 VQIDPTLFSQYGIRTVPALVVFCSQ--------------GYDIIRGNLRVGQALEKVAA- 192 V IDP LF + ++ VP V S YD + GN+ V AL A Sbjct: 169 VGIDPRLFRAFNVQAVPTYVAVSSDFDLCAGFSCQTKVPPYDRMTGNVTVEYALSSFADG 228 Query: 193 TGDCRQVAHDLLAGKG 208 G +VA L+ Sbjct: 229 YGPGARVAAVGLSNMR 244 >UniRef50_Q5NYF4 Similar to plasmid-like sex pilus assembly and mating formation protein trbC n=5 Tax=Betaproteobacteria RepID=Q5NYF4_AZOSE Length = 249 Score = 135 bits (339), Expect = 1e-30, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 86/243 (35%), Gaps = 39/243 (16%) Query: 4 SMKSLAALLMMLNGAVMASENVNTPENRQF---LKQQENLSRQLREKPDHQLKAWAEKQV 60 + +L +++ A ++N + ++Q +S Q E+ + + ++ ++ Sbjct: 7 VLPALPFAVVLAASAQTLAQNPPLVTDADIERVRREQPTISDQDIEQVRQRHRMPSDAEL 66 Query: 61 LENPLQRSDNHF-------------------LDELVRKQQASQDGKPRQGALYFVSFSIP 101 P+ + ++ ++ G L FVS S+P Sbjct: 67 QAAPVPTPPHIDALPTPAARAPIDLDALARGYASQAQEISRAEGLASGPGLLVFVSLSMP 126 Query: 102 EEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIR 161 + L+R++ + LRG + L+TT V L+ VQIDP F +Y + Sbjct: 127 QPTLQRLIDQAARAQASIVLRGFADGSLRTTVARVQRLIG-DRQVAVQIDPQAFDRYAVT 185 Query: 162 TVPALVV---------------FCSQGYDIIRGNLRVGQALEKVAATGD-CRQVAHDLLA 205 VPA V+ S+ + G++ + ALE + + A L Sbjct: 186 RVPAFVLVRDGARPVACAGGSCAPSEIFLRTSGDVSLDYALEYMQRSAPGFGSAADTFLK 245 Query: 206 GKG 208 Sbjct: 246 RIR 248 >UniRef50_Q5ZTS7 Putative conjugative transfer protein TrbC n=1 Tax=Legionella pneumophila subsp. pneumophila str. Philadelphia 1 RepID=Q5ZTS7_LEGPH Length = 223 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 23/226 (10%) Query: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWA---E 57 MK + + L+ + E+ ++ E ++ +++K + E Sbjct: 2 MKTIRMNTSFLVALF-----LLSFPALAEDEAYIASIEANTKNRANAFTNEIKQISKSLE 56 Query: 58 KQVLENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGI 117 + + ++ K L F+SFS+PE+ LK L + + G Sbjct: 57 TSEKSGQIAEFTGEMHQVIKTQEPIVTHLKKVSQVLVFLSFSMPEKSLKAWLLQCKKSGA 116 Query: 118 PATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVV-----FCSQ 172 +RG+++N K T A+ +L K G+Q+DP LF + I VPA+V C Sbjct: 117 TPVIRGLIHNSFKETMTAIQTLSKKTG-IGMQLDPILFKTFDIAMVPAVVYVKDTPACPA 175 Query: 173 G-------YDIIRGNLRVGQALEKVA--ATGDCRQVAHDLLAGKGD 209 YD + G++ + ALEK+ + + +L +G+ Sbjct: 176 NMDCKPVSYDSLYGDVSLDYALEKMRGDEQSEDPVLDQMILRLRGE 221 >UniRef50_A9L6J7 Type-F conjugative transfer system pilin assembly protein TrbC n=6 Tax=Shewanella baltica RepID=A9L6J7_SHEB9 Length = 246 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 44/188 (23%), Positives = 74/188 (39%), Gaps = 31/188 (16%) Query: 50 HQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGK-----------------PRQGA 92 +LKA + ++ P D L + R+ +A G+ G Sbjct: 56 DELKALSMRERHTLPPLNVDQAALFDKARQFEAQSKGQLDNALSPLLDAKPNPSADANGV 115 Query: 93 LYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVK---DGATDGVQ 149 + FVS +P L+++L ++ +P +RG++ T + + L+ G Sbjct: 116 MVFVSLGMPATSLQQLLMQSADLQVPLIVRGVLPQGFTATVKQMNHLIDNKGKTIQSGFA 175 Query: 150 IDPTLFSQYGIRTVPALVVFCS-----------QGYDIIRGNLRVGQALEKVAATGDCRQ 198 I+P F+Q+GI VPA V +D+I GN+ + AL +A G Sbjct: 176 INPQWFTQFGITQVPAFVAVRPNKCQAKQPCSSDDFDVIYGNVSLYDALNLLAQHGSIPD 235 Query: 199 VAHDLLAG 206 VA LA Sbjct: 236 VAAKTLAK 243 >UniRef50_C1SHA7 Type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SHA7_9BACT Length = 244 Score = 134 bits (338), Expect = 2e-30, Method: Composition-based stats. Identities = 47/248 (18%), Positives = 82/248 (33%), Gaps = 46/248 (18%) Query: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQV 60 MK+ + +L L A E ++ +K+ L + + + KA A Sbjct: 1 MKVILLALFTLCSSFVSAETLKETIDD------IKKSAKPDISLPDNQEMREKAKAFIDT 54 Query: 61 LENPLQRSDNHFLDELVRKQQASQDGK-------PRQGALYFVSFSIPEEGLKRMLGETR 113 + L + + ++ D P + F+S S+PE+ L+ R Sbjct: 55 GYDALMNKVSEYKKQIAESNGYEIDKDETCHSELPDKSLYIFISSSMPEKTLQNYSATAR 114 Query: 114 HF-GIPATLRGMVN--NDLKTTAEAVLSLVKDGA-----------TDGVQIDPTLFSQYG 159 G + G++ + T + V + V I+P LF + Sbjct: 115 DLEGSLLVINGVIGSIEQIMPTVDFVARISCGKGLADLTEDTTCDMAKVDINPYLFRAFN 174 Query: 160 IRTVPALVV-----------------FCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHD 202 I++VPA V Y I G++ V ALEK + +G VA Sbjct: 175 IKSVPAFVHSSLPYSEVMQKVTLGEPISEDSYTKIYGDVSVQYALEKFSDSG--ITVAKT 232 Query: 203 LLAGKGDS 210 +L Sbjct: 233 MLQKLKQG 240 >UniRef50_A8QYQ8 TrbC protein n=1 Tax=Fluoribacter dumoffii RepID=A8QYQ8_9GAMM Length = 140 Score = 132 bits (332), Expect = 7e-30, Method: Composition-based stats. Identities = 43/112 (38%), Positives = 63/112 (56%) Query: 94 YFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPT 153 FVSFS+P L+ L E+ IPA L G+ +N +K TA V+ L + + IDPT Sbjct: 25 VFVSFSMPGRLLEETLKESSRLHIPAYLNGLHHNSMKDTALKVMELSQRIPDLNLAIDPT 84 Query: 154 LFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDLLA 205 LF ++GI+ VPALVV + +D+I G+L + + L +A G+ HD Sbjct: 85 LFERFGIQQVPALVVAEEKKFDVIYGHLTLQEGLSWIAGHGETHFTLHDARR 136 >UniRef50_Q3IUV8 TrbC, sex pilus assembly and mating pair formation protein n=1 Tax=Rhodobacter sphaeroides 2.4.1 RepID=Q3IUV8_RHOS4 Length = 250 Score = 132 bits (332), Expect = 8e-30, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 79/203 (38%), Gaps = 24/203 (11%) Query: 22 SENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQ 81 +E R+ Q ++ + + +A + +V E + Sbjct: 54 AERRGEALARELTIQPPREGVEIEDLAGIRTRALNDPRVRALLGAPDAEEVAAETRARYG 113 Query: 82 ASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVK 141 + A+ F SFS+P+ L++M+ E + RG VNN + T + + Sbjct: 114 EA-------RAILFASFSMPDTSLRQMMREATAHDLTVVFRGFVNNSVFDTRARLEEVFA 166 Query: 142 DGATD-GVQIDPTLFSQYGIRTVPALVVFCSQ---------------GYDIIRGNLRVGQ 185 + T IDPTLF ++ IR+VPALVV +D + GN+ + Sbjct: 167 EDETGEAFGIDPTLFRRFDIRSVPALVVLAEDLGDCATPACEGDPPPRHDRVSGNVPLET 226 Query: 186 ALEKV-AATGDCRQVAHDLLAGK 207 AL + A G+ VA LL K Sbjct: 227 ALRVIAAGNGEAASVARSLLEQK 249 >UniRef50_Q1N8Z3 Putative uncharacterized protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N8Z3_9SPHN Length = 249 Score = 131 bits (328), Expect = 2e-29, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 18/194 (9%) Query: 32 QFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQA--SQDGKPR 89 ++ + + Q + H + ++ ++ S DELV Sbjct: 50 DVKRRDQEMKDQAEQIAQHAMTRISDPRLKGAAGDPSGAIDFDELVSGASEILKGGQGGA 109 Query: 90 QGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLV-KDGATDGV 148 + F S S+P E LK ++ T G RG N K + +V KD + Sbjct: 110 PMFMVFASTSMPAESLKPLINHTAAAGGVVVFRGFPGNSAKQFMAKLHEVVSKDDTNVRI 169 Query: 149 QIDPTLFSQYGIRTVPALVVFCSQ--------------GYDIIRGNLRVGQALEKVA-AT 193 +DP LF + ++ P VV S D + GN+ V ALE+ Sbjct: 170 MVDPRLFRAFNVQVAPTFVVAGSDFEPCDQLDCVSTPPPSDRMAGNVTVRFALERFVEEK 229 Query: 194 GDCRQVAHDLLAGK 207 G + A L+ Sbjct: 230 GPGARTAQVALSNL 243 >UniRef50_Q5WRY4 Putative uncharacterized protein n=1 Tax=Legionella pneumophila str. Lens RepID=Q5WRY4_LEGPL Length = 159 Score = 130 bits (326), Expect = 4e-29, Method: Composition-based stats. Identities = 43/119 (36%), Positives = 65/119 (54%) Query: 91 GALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQI 150 VSFSIPE L+ L E+ IPA L G+ + + TA V++L K + I Sbjct: 41 QISVLVSFSIPETLLQETLKESAQLNIPAYLNGLYRDSMSETALKVMALSKHIPNLNLAI 100 Query: 151 DPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDLLAGKGD 209 DPTLF ++GI+ VPA++V Q +D+I G+L + + L ++A GD D+ G+ Sbjct: 101 DPTLFERFGIQQVPAVIVDDGQTFDVIYGHLSIQEGLARMAGRGDVDFTPRDIRRVIGE 159 >UniRef50_A3VN15 Putative uncharacterized protein n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VN15_9PROT Length = 241 Score = 129 bits (323), Expect = 7e-29, Method: Composition-based stats. Identities = 45/174 (25%), Positives = 71/174 (40%), Gaps = 20/174 (11%) Query: 54 AWAEKQVLENPLQRSD-NHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGET 112 W E + + D + + + A Q+ G L FVSFS+PE+ L++++ + Sbjct: 64 RWGEAAAPSDTTEPVDLDAMVADAGVVSAARQETSGPAGVLVFVSFSMPEQSLRQLVLDA 123 Query: 113 RHFGIPATLRGMVNNDLKTTAEAVLSLVKDGAT----DGVQIDPTLFSQYGIRTVPALVV 168 +P L+G V LK TA + +L+ GV IDP F + + VPA + Sbjct: 124 HKAQVPVLLQGFVGGSLKETATRMRALLGADTGQDLLGGVVIDPRAFRIFRVTEVPAFIA 183 Query: 169 --------------FCSQGYDIIRGNLRVGQALEKVAATG-DCRQVAHDLLAGK 207 +D I GN+ +G AL +A+ G D A L Sbjct: 184 TRAPLPDCDGLDCDAPPPPHDRIAGNMSLGAALSALASEGTDAALQARASLKRW 237 >UniRef50_Q0F373 Putative uncharacterized protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F373_9PROT Length = 242 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 81/218 (37%), Gaps = 26/218 (11%) Query: 15 LNGAVMASENVNTPENRQFLKQQENLSRQLREKP-DHQLKAWAEKQVLENPLQRSDNHFL 73 + + + + +R+ R K A Q S + Sbjct: 19 FPSDMAMKKTQQAGSDLPSADDVRDAARRARGKLFQFNPDRVAVPSFPSLTRQPSVHADF 78 Query: 74 DELVRKQQASQDGKPR----QGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNN-- 127 +E+VR Q + G+ G L FVSFS+P E LKR++ + LRG+V++ Sbjct: 79 NEVVRNAQKAGLGRDAQRASPGLLVFVSFSMPAESLKRLVRQAEQAHAAILLRGLVSDSS 138 Query: 128 ---DLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVV-------FCSQGYD-- 175 + TA+AV DGV I+P F ++ + VP+ V+ C G+ Sbjct: 139 GRPSFRATADAVRR----SGVDGVSINPVAFERFHVSNVPSFVLLLEDECPSCGDGFIPR 194 Query: 176 --IIRGNLRVGQALEKVA-ATGDCRQVAHDLLAGKGDS 210 I G++ + AL + + + A L Sbjct: 195 HLKISGDVSMDYALRAMKTRRPEAQSRADAYLDRLKTG 232 >UniRef50_A0B4P2 Putative uncharacterized protein n=1 Tax=Burkholderia cenocepacia HI2424 RepID=A0B4P2_BURCH Length = 262 Score = 126 bits (316), Expect = 5e-28, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 71/200 (35%), Gaps = 18/200 (9%) Query: 26 NTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQD 85 + + + + Q + RQ+ + L P + + ++ ++ Sbjct: 63 SDAIDAEMSRIQGSRDRQMAQAAAKAAHDGNAFPNLPTPAPAAAGADPFAVAKRYESRTQ 122 Query: 86 GKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGAT 145 + + F SFS+P L R++ G RG N+ LK TA + L + Sbjct: 123 RRVTDSFVAFASFSMPAASLVRLVKTMNQAGGTVVFRGFKNDSLKATAAEMQRLGIA--S 180 Query: 146 DGVQIDPTLFSQYGIRTVPALVVFCSQG---------------YDIIRGNLRVGQALEKV 190 G+ ++P F+QY I VPA VV Y + G++ AL ++ Sbjct: 181 GGIVVNPKAFTQYRIARVPAYVVTRGGDANNQVDSSGCALPASYVSLSGDVTPAYALRQI 240 Query: 191 AATGDC-RQVAHDLLAGKGD 209 +A L GD Sbjct: 241 VDHSPTYGGIAERYLRALGD 260 >UniRef50_B4RLR3 TrbC n=9 Tax=Neisseria RepID=B4RLR3_NEIG2 Length = 251 Score = 124 bits (312), Expect = 2e-27, Method: Composition-based stats. Identities = 51/211 (24%), Positives = 85/211 (40%), Gaps = 30/211 (14%) Query: 17 GAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDEL 76 G V +N N +NRQ + +L PD ++ + ++ +P+ + + Sbjct: 47 GKVTRVKNPNVGDNRQ-QPEIPDLKGIKHRVPD--VRDYGNAKIKADPMSIAQKYRT--- 100 Query: 77 VRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAV 136 Q ++ + + FVSFS+PE LKR+ ET G +RG ++ LK T +A Sbjct: 101 --ASQEARQAAEKADLMVFVSFSMPEASLKRIARETAKAGGVMVIRGFKDDSLKATVKAA 158 Query: 137 LSLVKDGATDGVQIDPTLFSQYGIRTVPALVVF--CSQGYD---------------IIRG 179 L + I P LF YGI VP V+ G D ++G Sbjct: 159 EEL--AALQGDMLIHPELFDHYGITEVPVTVIARNSEDGLDGCAVNSELGMCTEHVAVKG 216 Query: 180 NLRVGQALEKVAATGD---CRQVAHDLLAGK 207 ++ + ALE + + +A+ LA Sbjct: 217 DVSLHSALEHLIRESEDKKLSDIANAKLAVL 247 >UniRef50_Q58AH5 Sex pilus assembly and mating pair formation protein n=3 Tax=Burkholderiaceae RepID=Q58AH5_RALME Length = 244 Score = 124 bits (310), Expect = 3e-27, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 79/213 (37%), Gaps = 28/213 (13%) Query: 22 SENVNTPENRQFLKQQENLSRQLREKPDHQLK-----AWAEKQVLENPLQRSDNHFLDEL 76 +++++ P + + + +K + + LD++ Sbjct: 25 AQSLSLPPEAEIQTEMAKHREEAAAVLGQNIKPVKPGTFKVEVPTIKAPPPVRTQSLDDI 84 Query: 77 VRKQQASQDGKPRQG------ALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLK 130 +++ ++ G P + FVSFS+P+ L + + + G +RG + LK Sbjct: 85 MQQYAEAKKGGPAPAKQGANDLIIFVSFSMPKPVLTELARQAKETGAVMVVRGFKDGSLK 144 Query: 131 TTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQ-------------GYDII 177 T A L + + G +I P LF + + VP VV ++ Y + Sbjct: 145 ATKLAALEVNRAG--APWEIHPDLFKAFKVTAVPTFVVASAEAESVLDDGCSPETAYSAV 202 Query: 178 RGNLRVGQALEKVAATGD--CRQVAHDLLAGKG 208 GN+ V AL+ + ++A + LA Sbjct: 203 AGNMSVELALDTIRRRAQPTIAKLAENRLAAIR 235 >UniRef50_C9NPU1 Putative uncharacterized protein n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NPU1_9VIBR Length = 193 Score = 122 bits (307), Expect = 5e-27, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 60/133 (45%), Gaps = 16/133 (12%) Query: 92 ALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKD----GATDG 147 L F+S ++P+ L+ +L ++ + P +RG + TA+ ++ L+ G Sbjct: 60 LLVFISLTMPDASLRSLLKQSTQWQAPLLIRGPLPAGFTATAQRLMELLNAKGALPIRAG 119 Query: 148 VQIDPTLFSQYGIRTVPALVVFC-----------SQGYDIIRGNLRVGQALEKVAATGDC 196 V IDP F ++ +R VP V+ + I+GN+ + ALE ++ T Sbjct: 120 VAIDPDAFHRFHVRDVPTFVLIKSNRCQARWPCGPDDHAKIKGNVSIRTALEALS-TSPL 178 Query: 197 RQVAHDLLAGKGD 209 VA LL + D Sbjct: 179 ADVAETLLEAQRD 191 >UniRef50_C5SIL3 Type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SIL3_9CAUL Length = 243 Score = 122 bits (305), Expect = 1e-26, Method: Composition-based stats. Identities = 55/228 (24%), Positives = 92/228 (40%), Gaps = 27/228 (11%) Query: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLR-----EKPDHQLKAW 55 +K ++ ALL +L+G A EN E+ Q + + + + K + Sbjct: 7 LKTLACAVGALL-LLSGPTPAQENRFEIEDLVKSAQARSDAMKADLTGLNASTVEKTKRY 65 Query: 56 AEKQVL----ENPLQRSDNHFLDELVRKQQASQDGKPRQGA-LYFVSFSIPEEGLKRMLG 110 A+ + R+ +L + + + G VS S+P E L+++ Sbjct: 66 AQDAIQLAKGNRERLRTGLTYLGKQYDIDFFDTEAEVEGGVVYVAVSLSMPREALRQLSA 125 Query: 111 ETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVF- 169 + + G +RG V KTT + +L + A GV IDP +F QY I VP+ V Sbjct: 126 DAQKAGAVLVIRGFVGGSFKTTRQILLKTFSEEAAAGVLIDPRVFQQYRIDRVPSFVAAN 185 Query: 170 -----CSQG----------YDIIRGNLRVGQALEKVAATGDCRQVAHD 202 C G +D++RGN+ + AL+ +A GD A Sbjct: 186 TPVASCEDGGLECARTDVPFDLVRGNIPLATALKVLAEKGDAAPRAAR 233 >UniRef50_B3EB54 Type-F conjugative transfer system pilin assembly protein TrbC n=2 Tax=Desulfuromonadales RepID=B3EB54_GEOLS Length = 320 Score = 119 bits (299), Expect = 4e-26, Method: Composition-based stats. Identities = 38/236 (16%), Positives = 81/236 (34%), Gaps = 39/236 (16%) Query: 6 KSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLRE---KPDHQLKAWAEKQVLE 62 S+ L L A +E + P++R ++ +L+ L + QL+ +E + ++ Sbjct: 79 MSVPDLANTLAKADQLAERLAIPKSRN-DREMSDLAGTLDSYYHSDEFQLRVLSETERIK 137 Query: 63 NPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFG---IPA 119 + K+++ + FVS ++P + ++ G + Sbjct: 138 TEVFGDKVTGYYADKAKKESKGKLTNSERIYVFVSSAMPLQTIRNYAASVSRLGDPNVTL 197 Query: 120 TLRGMVNN--DLKTTAEAV------------LSLVKDGATDGVQIDPTLFSQYGIRTVPA 165 +RG V+ ++ T + + + +DP LF +Y I VPA Sbjct: 198 VMRGFVDGMTKIQPTISFIASVLQRDQSCRPQEGECEMIPTSLAVDPLLFRRYQIDRVPA 257 Query: 166 LVVFCS------------------QGYDIIRGNLRVGQALEKVAATGDCRQVAHDL 203 +V Y G+ R+ L+++ + +A L Sbjct: 258 VVYARGLKAEDAGLSEGDAKNATIADYHTAYGDARLEYLLDQIQRETGSQSLAALL 313 >UniRef50_C5V0C2 Type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V0C2_9PROT Length = 219 Score = 118 bits (296), Expect = 1e-25, Method: Composition-based stats. Identities = 39/188 (20%), Positives = 74/188 (39%), Gaps = 21/188 (11%) Query: 21 ASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQ 80 +E NR + E + Q R P +L + V +P ++ + ++ Sbjct: 22 GAETDMERSNRILKEVTERVVNQYR-APAPRLDNMPQPAVKASPADMAEQFRQSPIAKQP 80 Query: 81 QASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLV 140 + + + FVSFS+P E L R++ ++ G RG + L ++ + L+ Sbjct: 81 PVAPE------LMVFVSFSMPRENLLRIVEQSERTGARLIFRGFTGDKLTDMSKRIADLL 134 Query: 141 KDGATDGVQIDPTLFSQYGIRTVPALVVFCSQ-------------GYDIIRGNLRVGQAL 187 + V + P F+Q+ + VPALV+ S Y + G++ AL Sbjct: 135 GSHRVEAV-VHPPAFTQFKVNQVPALVISQSDAGNQLDNGCAQAERYVKVTGDVSQDYAL 193 Query: 188 EKVAATGD 195 + + T Sbjct: 194 DYIERTSP 201 >UniRef50_A8F1T9 Conjugative transfer protein TrbC n=9 Tax=Rickettsia RepID=A8F1T9_RICM5 Length = 155 Score = 117 bits (294), Expect = 2e-25, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 50/124 (40%), Gaps = 6/124 (4%) Query: 71 HFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLK 130 + L E Q K FVS S+P+ LK E G +RG+ N+ Sbjct: 35 NVLAEQEELLQEIIQPKTYNQIYIFVSLSMPDSALKSYYIEAEQAGARLVIRGLKNSSFL 94 Query: 131 TTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVV-FCSQGYDIIRGNLRVGQALEK 189 T D IDP LF +Y I +VPA++V +G + G++ + ALE Sbjct: 95 DTKAKA-----DEINISFDIDPNLFEEYQITSVPAIIVNSEGKGVKRLTGHISLHDALEI 149 Query: 190 VAAT 193 + Sbjct: 150 MNKE 153 >UniRef50_A0R7Q2 Putative uncharacterized protein n=1 Tax=Pelobacter propionicus DSM 2379 RepID=A0R7Q2_PELPD Length = 316 Score = 117 bits (292), Expect = 4e-25, Method: Composition-based stats. Identities = 35/218 (16%), Positives = 64/218 (29%), Gaps = 37/218 (16%) Query: 13 MMLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHF 72 M+L E + + +L + + +Q+ P R Sbjct: 96 MVLPKNAFEKEMQAKAAETIAVYRSPEYQAKLARETARIKREMFHEQLEAIPADRGGAKQ 155 Query: 73 LDELVRKQQ-ASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFG----IPATLRGMVNN 127 + L +++ + + F+S S+P E ++ + + +RG + Sbjct: 156 VKALAKQESPKRARLQDDERIYVFISSSMPMETIRNYAVSAGQYNDPKKVVLVMRGFIGG 215 Query: 128 --------DL-------KTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCS- 171 T D V IDP LF +YGIR VPA V Sbjct: 216 MQKIGPTTSFVADVLKRSATCNLAAGEQCDMVNTNVLIDPILFRRYGIREVPATVYAKGV 275 Query: 172 ----------------QGYDIIRGNLRVGQALEKVAAT 193 + + G+ + L K+A + Sbjct: 276 KVNLPEQSEGNDDVVVGSFAVAYGDASLEYNLSKIAGS 313 >UniRef50_A3WDD8 TrbC, sex pilus assembly and mating pair formation protein n=5 Tax=Erythrobacter RepID=A3WDD8_9SPHN Length = 251 Score = 115 bits (287), Expect = 1e-24, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 77/211 (36%), Gaps = 23/211 (10%) Query: 21 ASENVNTPENRQ--FLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVR 78 A+E+ E + + L+ R A + LD ++R Sbjct: 40 AAEHAVDAEALATSVRTKADTLAEDTRAAQQTAFDNRAGYAETAQATANAGPLDLDGMIR 99 Query: 79 KQQASQDGK--PRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAV 136 Q ++ + F S ++PE LK ++ + G LRG D + + Sbjct: 100 AQADAEVAAMGDTPRFIAFASLAMPEPSLKALVRDVSRAGGVTVLRGFPQGDSARFKKRI 159 Query: 137 LSLVKDGATDG-VQIDPTLFSQYGIRTVPALVVFCSQ--------------GYDIIRGNL 181 ++ DG G + IDP LF + I+ P+ V+ S +D I GN+ Sbjct: 160 AAIWSDGDEAGALGIDPRLFRAFDIKVTPSFVMIASDFSPCDGFDCKDVLPPHDRIAGNI 219 Query: 182 RVGQALEKVAA-TGDCRQVAH---DLLAGKG 208 V + L+ A+ G Q+A L G+ Sbjct: 220 SVAEVLDTFASGGGPGAQLARLHSRRLEGER 250 >UniRef50_D2TZZ3 Conjugal transfer pilus assembly protein TrbC (Fragment) n=1 Tax=Arsenophonus nasoniae RepID=D2TZZ3_9ENTR Length = 173 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 38/107 (35%), Positives = 63/107 (58%), Gaps = 4/107 (3%) Query: 83 SQDGKPRQGAL----YFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLS 138 +++G P +G YF+S SIPE+ L +L + GI G+++N ++ TA +L+ Sbjct: 55 AEEGMPLEGITQETAYFLSSSIPEKTLVPLLKSAQAKGIAVYFNGLIDNSMEKTARYLLN 114 Query: 139 LVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQ 185 L++ G+Q+DP F YGI VPALV C + +DI+ G++ +G Sbjct: 115 LIQKYQVAGIQVDPLRFDYYGITQVPALVKRCGKDFDIVYGSVALGG 161 >UniRef50_C5F051 Putative uncharacterized protein (Fragment) n=1 Tax=Helicobacter pullorum MIT 98-5489 RepID=C5F051_9HELI Length = 285 Score = 114 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 66/205 (32%), Gaps = 40/205 (19%) Query: 29 ENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKP 88 E+++ + + + K L E +L + + +Q S K Sbjct: 80 ESKEAERHAKEIKEYSDSKGFKDLVEQNENHLLYDKEIDWGKYVATPQTEQQMQSTQPKN 139 Query: 89 -------RQGALYFVSFSIPEEGLKRMLGETRH--FGIPATLRGMVNNDLKT---TAEAV 136 +S S+P+E + + + LRG+V ND+ T V Sbjct: 140 LNQFLSQNDKIFIVISESMPKETILNYFRTLENVNTDVTFILRGVVGNDISKITPTFNYV 199 Query: 137 LSLVKDGATD-----------GVQIDPTLFSQYGIRTVPALVVF---------------- 169 L+ V I+P + ++ I+ VPA++ Sbjct: 200 RDLLIKDKNGKPDDPKNRFHYQVDINPKVTQKFKIQKVPAVIYIQNYDYSLQEPTELKME 259 Query: 170 -CSQGYDIIRGNLRVGQALEKVAAT 193 ++ Y + G++ + AL ++ Sbjct: 260 NSNERYYVAYGDVGIDYALREINKK 284 >UniRef50_C0QUV1 Putative uncharacterized protein n=1 Tax=Persephonella marina EX-H1 RepID=C0QUV1_PERMH Length = 238 Score = 113 bits (283), Expect = 4e-24, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 70/179 (39%), Gaps = 22/179 (12%) Query: 32 QFLKQQENLSRQLREKPD-HQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQ 90 + LK+ K D + K E L+ ++LD ++ +GKP + Sbjct: 62 ENLKEVGKFKSLTENKADVSEYKKLGENVNLKLLENIYGKNWLDIRLK-----LEGKPEK 116 Query: 91 GALYF--VSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGV 148 L F S S+P + +K + ++ + G++ K T + + SL + V Sbjct: 117 KNLIFYLFSTSVPMQTVKNVFLASQKYE-NLEFYGVLRGISKKTWKYLNSLDEAMNNMTV 175 Query: 149 QIDPTLFSQYGIRTVPALVVF-CSQG------------YDIIRGNLRVGQALEKVAATG 194 +++P +F VPA V+ C + ++ G++ + A+EK G Sbjct: 176 KVNPLIFKAVDAEVVPAFVIAECPERPYGIIRSKSCKFKAVLYGDVSLDFAVEKFKEEG 234 >UniRef50_A2SNI6 Sex pilus assembly and mating pair formation protein n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SNI6_METPP Length = 228 Score = 112 bits (281), Expect = 5e-24, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 61/172 (35%), Gaps = 23/172 (13%) Query: 58 KQVLENPLQRSDNHFLDELVRKQQASQDGKPRQGA------LYFVSFSIPEEGLKRMLGE 111 L+ELV K ++ G + + FVS S+P+E L + + Sbjct: 50 PDAAGKKRDTPTGDNLEELVSKYNSALRGDAPKAVSARGDLVVFVSLSMPKEVLTELSRQ 109 Query: 112 TRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFC- 170 + G LRG + + T A + G +I P LF + + VP +V+ Sbjct: 110 AKEMGAMLVLRGFKDGSVDKTRIAAQEVNPSG--APWEIHPDLFKAFKVNKVPTIVLANA 167 Query: 171 ------------SQGYDIIRGNLRVGQALEKVAATG--DCRQVAHDLLAGKG 208 Y + GN+ + AL + G D ++A LA Sbjct: 168 ASGSLDEEGCAPEATYGSVSGNVSLELALNTLRLRGRPDIAKLAELRLADLR 219 >UniRef50_C4NVV1 TraW n=9 Tax=Gammaproteobacteria RepID=C4NVV1_ECOLX Length = 421 Score = 112 bits (281), Expect = 6e-24, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 92/235 (39%), Gaps = 38/235 (16%) Query: 8 LAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQLRE-------KPDHQLKAWAEKQV 60 L AL+ + G A E+ T +++ ++Q + ++++ ++ + H +A AE + Sbjct: 16 LVALMFSVAGGAYAQESPLTEQDKALIEQGKQIAQKAQKMEMPSLLQNQHMDEAQAEAKA 75 Query: 61 LENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETR-HFGIPA 119 LQ ++ L E+ RKQ L F S S+ E+GL +L Sbjct: 76 FFKQLQTTNPT-LKEMHRKQAEKG-IYSDHRILVFASLSLGEQGLDDVLTAVSGQPDSVI 133 Query: 120 TLRGMVNN-DLKTTAEAVLSLV-KDGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDII 177 RG+ +L +A+ +L K + I+PTLF Y I VP +V+ + Sbjct: 134 VFRGIPEGMNLGQGVKAIQALAAKKDPVPNIIINPTLFKTYNITAVPTIVMLEDEPLPGE 193 Query: 178 R-------------------------GNLRVGQALEKVAATGDCRQVAHDLLAGK 207 + G+L V +EK++ D VA LA Sbjct: 194 QPNVVAQVSGLSDPVWLAREVDNGEKGDLGVKGPVEKISE-PDLIDVAKKRLANI 247 >UniRef50_B0RKU4 Sex pilus assembly and mating pair formation protein TrbC n=2 Tax=Yersinia RepID=B0RKU4_YEREN Length = 239 Score = 110 bits (275), Expect = 3e-23, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 76/232 (32%), Gaps = 50/232 (21%) Query: 1 MKLSMKSLAALLMMLNGAVMASENVNTPENRQFLKQQENLSRQL--REKPDHQLKAWAEK 58 MK + +++ L N+ +N + N ++ + ++ ++AE Sbjct: 1 MKKLLITISLALTA---------NLVHAQNIAISPEMMNAAQSAVDHRVNNKEMNSFAEN 51 Query: 59 QVLENPLQRSDN------------HFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLK 106 + LD ++ + + + + FVS S+P L+ Sbjct: 52 IASYSKSSEFKQQQQDLQQQVFKTAGLDPDKQQHEERPEL-VKDQLVLFVSSSMPIHTLR 110 Query: 107 RMLGETRHFGIPATLRGMVNNDLK--TTAEAVLSLV----------KDGATDGVQIDPTL 154 + G LRG V + T + ++ + V IDP L Sbjct: 111 NYARDLSKVGGVMVLRGAVGGISRIADTMKLSREILAVNQTCDTTSCKMWSTQVLIDPVL 170 Query: 155 FSQYGIRTVPALVVFCS--------------QGYDIIRGNLRVGQALEKVAA 192 F QY I+ VPAL+ + II G+ + + LE + Sbjct: 171 FKQYDIKVVPALIFQPDMNINSYCDGLELMKKAETIIYGDASIAKMLEAMNR 222 >UniRef50_B7J843 Pilus assembly protein TraW, putative n=1 Tax=Acidithiobacillus ferrooxidans ATCC 23270 RepID=B7J843_ACIF2 Length = 422 Score = 110 bits (274), Expect = 4e-23, Method: Composition-based stats. Identities = 33/197 (16%), Positives = 67/197 (34%), Gaps = 17/197 (8%) Query: 14 MLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAW--AEKQVLENPLQRSDNH 71 MA + N + + + Q L+ V N ++ Sbjct: 41 AAAETEMAVPKSDVQANNILQRYAQQYAPQSASAAQQWLRTRVNGVPVVPPNLHGKALQE 100 Query: 72 FLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFG-----IPATLRGMVN 126 ++D + ++ + L F+S +P+ L++ E LRG + Sbjct: 101 YVDHTLMAKEENA-----AKTLVFISMDMPKAILRKWFAEVADNRHLFETTVFVLRGWPD 155 Query: 127 N--DLKTTAEAVLSLV-KDGATDGVQIDPTLFSQYGIRTVPALVVFCSQG-YDIIRGNLR 182 N L T + L+ V+I+P LF+ + + VP ++ G + +I G+ Sbjct: 156 NPEGLPETVSKINRLMPSAKKAANVEINPILFTDHKVNIVPVIIHQPGNGAWSVIVGDGD 215 Query: 183 -VGQALEKVAATGDCRQ 198 + A+ + D Sbjct: 216 GLQGAIRAINQGKDSPT 232 >UniRef50_A5CC00 Conjugative transfer protein n=9 Tax=Orientia tsutsugamushi RepID=A5CC00_ORITB Length = 127 Score = 110 bits (274), Expect = 4e-23, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 7/108 (6%) Query: 88 PRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDG 147 +Q FVSFS+ +E LK +++ FG +RG++NN T + L Sbjct: 23 NQQKTFIFVSFSMSDEALKSYFNDSQKFGAQLVMRGLINNSFTQTKNKTMELG-----IS 77 Query: 148 VQIDPTLFSQYGIRTVPALVVFCSQG--YDIIRGNLRVGQALEKVAAT 193 IDP+LF QY I VP +V+ + + G++ + ALE + Sbjct: 78 FDIDPSLFEQYKIDVVPVIVIDDEKRGLTKKLTGHIPLAIALEIMNEN 125 >UniRef50_Q2LU04 Hypothetical cytosolic protein n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU04_SYNAS Length = 319 Score = 109 bits (273), Expect = 5e-23, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 71/196 (36%), Gaps = 29/196 (14%) Query: 24 NVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQAS 83 N+ PEN + Q+ + L K E ++ E +D + Sbjct: 85 NIEIPENLHKAQGQKEAGKLLEYYQSEAFKRKYEAEI-ERLKGTVFKDTIDSYYGDSNGA 143 Query: 84 QDGKP-------RQGALYFVSFSIPEEGLKRMLGETRHFGIP---ATLRGMVNN--DLKT 131 + + F+S S+P L+ + G P L+G V +K Sbjct: 144 EKDSVKGGTLPGNERIYLFISSSVPIGTLRNYARDLDRLGDPNVFMVLQGFVGGMKRVKP 203 Query: 132 TAEAVLSLVKDGATDGVQ------------IDPTLFSQYGIRTVPALVVFCSQGYDIIRG 179 T + V ++ + A +Q IDP LF +YGI VPA V D+ Sbjct: 204 TMDFVRKIITEDADCDIQKNKCSAYKVKVKIDPLLFRKYGITRVPAAVYVP----DVRIM 259 Query: 180 NLRVGQALEKVAATGD 195 ++ + + +E A TGD Sbjct: 260 DVTLSEGMEGNAKTGD 275 >UniRef50_C4YZL4 Type-F conjugative transfer system pilin assembly protein TrbC n=1 Tax=Rickettsia endosymbiont of Ixodes scapularis RepID=C4YZL4_9RICK Length = 120 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 6/101 (5%) Query: 93 LYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDP 152 FVSFS+ +E LK E+ +RG+VNN+ T + L L + IDP Sbjct: 24 YIFVSFSMSDEALKAYYRESEELQAILVIRGLVNNNFLDTRQKALDL-----SINFNIDP 78 Query: 153 TLFSQYGIRTVPALVVFCS-QGYDIIRGNLRVGQALEKVAA 192 LF Y + +VP ++ G + G++ + ALE Sbjct: 79 ELFENYHVTSVPVIIEDDKLTGIKKVSGHIPLSAALELFKQ 119 >UniRef50_Q1MY34 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1MY34_9GAMM Length = 246 Score = 105 bits (263), Expect = 7e-22, Method: Composition-based stats. Identities = 36/205 (17%), Positives = 70/205 (34%), Gaps = 26/205 (12%) Query: 20 MASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLEN-------PLQRSDNHF 72 + + + ++ + ++ + +H K + + N D+ Sbjct: 40 TQNALKHERNTEIYREEIQRANQFFSKYENHANKETLGQAIESNGFITNHYNELMDDHFN 99 Query: 73 LDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTT 132 D + A L FVSFS+ + + + G L G DL+TT Sbjct: 100 SDTQAEAKDARA---IETNILIFVSFSMDVSDIFSLAKDAHDIGGHVVLNGFKK-DLETT 155 Query: 133 AEAVLSL-VKDGATDGVQIDPTLFSQYGIRTVPALVV------------FCSQGYDI-IR 178 + + + + IDPTLF ++ +++VP V+ C + I Sbjct: 156 LKIISEMNTRADKPLPFLIDPTLFDRFSVQSVPHYVLPLESVMPCLEKNVCHKPRSIEAS 215 Query: 179 GNLRVGQALEKVAATGDCRQVAHDL 203 G + + LE +A + V L Sbjct: 216 GLVPIKYFLE-LAERNENSDVVEGL 239 >UniRef50_Q5NX40 Putative uncharacterized protein trbC n=1 Tax=Aromatoleum aromaticum EbN1 RepID=Q5NX40_AZOSE Length = 254 Score = 105 bits (262), Expect = 1e-21, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 23/217 (10%) Query: 14 MLNGAVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFL 73 + + A + ++ + + R R + D L Sbjct: 39 LFDKADVKLKDDEAQLRVEGMDSMNKAMRAARALKGTNQLGVTTDAAAKKAAGEKDFSDL 98 Query: 74 DELVRKQQ-----ASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRG-MVNN 127 +ELV++ + + + FVSFS+P + ++ + + G LRG Sbjct: 99 NELVKRYETARTSEAAPTNSDGTLMLFVSFSMPPDVIREYSRQAQAAGATLVLRGNYKGG 158 Query: 128 DLKTTAEAVLSLVKDGATDGVQIDPTLFSQYGIRTVPALVVFCSQ------------GYD 175 ++ T E + + G I+P +F+ Y I VPALV+ Y Sbjct: 159 TVRRTTE--QAGALNAGGAGWIINPEVFTGYKIDAVPALVLSRDNLNVDDEGCFPVGEYA 216 Query: 176 IIRGNLRVGQALEKVAA---TGDCRQVAHDLLAGKGD 209 + G++ + +LEK++ + RQ+A LA + Sbjct: 217 SVFGDISIIGSLEKISQSATKPEIRQLAAKRLAMIKE 253 >UniRef50_Q19NQ8 TrhW n=9 Tax=Enterobacteriaceae RepID=Q19NQ8_ECOK1 Length = 503 Score = 102 bits (254), Expect = 8e-21, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 6/162 (3%) Query: 38 ENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVS 97 E + + KP+ + L + F ++ ++ + G F S Sbjct: 142 EAALKAVENKPEVMRGQSKNIEKLFGSSGITAADFERKMDSTREEAL--STENGITIFAS 199 Query: 98 FSIPEEGLKRMLGETRHFGIPATLRGMVNND--LKTTAEAVLSLVKDGATDG--VQIDPT 153 FS+P+ L+ +L G+ L T A+ ++ G + + IDP Sbjct: 200 FSLPDYVLEDLLRTASEHKARVVFNGLKKGTTRLPETQAAINQMIVKGKFESPLITIDPD 259 Query: 154 LFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGD 195 FSQY + VP ++ + + G+ V ++A D Sbjct: 260 SFSQYQVTQVPTIISREQARFAKMVGSFNVEFFQRELAKKPD 301 >UniRef50_Q8L272 Pilus biogenesis protein n=1 Tax=Proteus vulgaris RepID=Q8L272_PROVU Length = 416 Score = 99.4 bits (246), Expect = 7e-20, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 6/155 (3%) Query: 31 RQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQ 90 + ++Q + R+ K E V + + + A Sbjct: 60 KIAKQKQAEYEKLSRDTVASSHKRLGEMPVPKTEHDIITDAVTGAIADSDMADGKQNKVT 119 Query: 91 GALYFV--SFSIPEEGLKRMLGETR-HFGIPATLRGMVNND--LKTTAEAVLSLVKDGAT 145 G Y+V S S+ ++ ++ + + + + +RG+ + D L+ ++ G Sbjct: 120 GDFYYVLLSSSLSDDEIRNIFSQYKDRTDVAFVIRGVNDKDKILQELTHWQQLVLDAGGG 179 Query: 146 DGVQIDPTLFSQYGIRTVPALVVF-CSQGYDIIRG 179 V +DPT+F Y + ++P ++ + + G Sbjct: 180 ATVNLDPTIFKSYNVTSIPTIIHEKDGELVARVSG 214 >UniRef50_A9AU18 Putative uncharacterized protein n=1 Tax=Burkholderia multivorans ATCC 17616 RepID=A9AU18_BURM1 Length = 165 Score = 99.4 bits (246), Expect = 7e-20, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 11/147 (7%) Query: 71 HFLDELVRKQQASQDGKPRQGALYFVSFSIPEEGLKRMLGETRHFGIPATLRGMVNN--D 128 + + S+ FVS +P + + ++ E L G Sbjct: 11 FAAAPVHGEPSLSETIAAPWNTYIFVSSRMPLQSIIQVTREASRAHAVIVLTGFAGEEPT 70 Query: 129 LKTTAEAVLSLVKD---GATDGVQIDPTLFSQYGIRTVPALVVF-----CSQGYDIIRGN 180 L +T + + +DP L +YG+ P+ V+ + + G+ Sbjct: 71 LTSTQRYAADINRACCTTQPARWIVDPVLTRRYGVTAAPSFVIAHGASENPGEFSKVAGD 130 Query: 181 LRVGQALEKVAATGDCRQVAHDLLAGK 207 + + QAL+ A A D + Sbjct: 131 MSLSQALKFFAQNSRLPS-ARDYASKL 156 >UniRef50_A7H3K1 Putative uncharacterized protein n=2 Tax=Campylobacter RepID=A7H3K1_CAMJD Length = 314 Score = 99.0 bits (245), Expect = 9e-20, Method: Composition-based stats. Identities = 27/225 (12%), Positives = 66/225 (29%), Gaps = 39/225 (17%) Query: 18 AVMASENVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELV 77 A N + + + + + ++ ++++ Sbjct: 80 NQSAESNKSAKVISDMRRSDAFEKKIVDNQNYILYDKSMNFNEYLGEYSQNTKDMINQME 139 Query: 78 RKQ---QASQDGKPRQGALYFVSFSIPEEGLKRMLG--ETRHFGIPATLRGMVNNDLK-- 130 + ++ P + +S S+ + ++ E I LRG+V ND + Sbjct: 140 NSKHLISTNKYLNPNEKIFIIISSSMDKSSIQNYFKLLENVKTDITFVLRGLVGNDARYI 199 Query: 131 -TTAEAVLSLVKDGATD------------GVQIDPTLFSQYGIRTVPALVVFC------- 170 T + L+ + +QI+P + ++ I VPA++ Sbjct: 200 NPTFSYLQDLLVKDPNNKNKEDKNNFYYYNIQINPKVTRRFNITKVPAVIFIKNYDPIVE 259 Query: 171 ------------SQGYDIIRGNLRVGQALEKVAATGDCRQVAHDL 203 + Y + G + AL ++ +A + Sbjct: 260 DYWKMTNTPADTDEEYFVAYGEASINYALSEINKQAKSDGLARLI 304 >UniRef50_Q1NGS4 Hypothetical cytosolic protein n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1NGS4_9SPHN Length = 255 Score = 97.1 bits (240), Expect = 4e-19, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 55/176 (31%), Gaps = 35/176 (19%) Query: 63 NPLQRSDNHFLDELVRKQQASQDGKPRQGA-----LYFVSFSIPEEGLKRMLGETRHFGI 117 + +Q L + A+ + +P L F S S+P L+ + G Sbjct: 77 DSMQARLYQALGLAIPDDPATPEPRPTPANKAWVPLIFASSSMPISTLRNYAAQLEKAGG 136 Query: 118 PATLRGMVN-----NDLKTTAEAVLSL-------VKDGATDGVQIDPTLFSQYGIRTVPA 165 RG+ + + VL L + IDP LF Q+G+ VPA Sbjct: 137 VIAFRGVPGGLSRIGPMARLSARVLRLDPGCEGPACAMRNVQLVIDPILFRQHGVARVPA 196 Query: 166 LVVFCSQG---------------YDIIRGNLRVGQALEKVAATG---DCRQVAHDL 203 + I+ G+ + +E+ A G + A L Sbjct: 197 FAMVPGDPTLPYCERDEESGPRASHIVYGDAALSGLMEEYARLGGKEEVSDAASRL 252 >UniRef50_C6YK86 Sex pilus assembly protein n=14 Tax=Gammaproteobacteria RepID=C6YK86_VIBCH Length = 406 Score = 95.2 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 50/164 (30%), Gaps = 6/164 (3%) Query: 43 QLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQGALYFVSFSIPE 102 Q + K E + E + K L F S S+ + Sbjct: 55 QEPYPLSDEDKKIVEMSRSILQSVVDGSSEFIEPFSPIEQPASLKHNDEWLIFASSSLGD 114 Query: 103 EGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLS----LVKDGATDGVQIDPTLFSQY 158 LK++ E G RG+ KT A+ +V V+IDP F + Sbjct: 115 SSLKQLFKEASATGAIVLFRGIPEG--KTLGAAIRDWHTLMVGLDPVPQVRIDPKAFVHW 172 Query: 159 GIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHD 202 + +VPA+ + L++ TG+ + Sbjct: 173 RVTSVPAIFRIEDDKVTASALGVYSKDWLQRQIETGNTGSLGQR 216 >UniRef50_B7XGR9 Putative pilus assembly protein n=2 Tax=Pseudomonas RepID=B7XGR9_PSEPU Length = 412 Score = 95.2 bits (235), Expect = 1e-18, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 61/186 (32%), Gaps = 14/186 (7%) Query: 31 RQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQ 90 + +++ + R + +W + + +Q D + A + ++ Sbjct: 40 LEQVREISRNANAARAESGQDDMSWVSEMAEKAIIQAGDENVQQSDSGLASADGSDREKK 99 Query: 91 -------GALYFVSFSIPEEGLKRMLGETRHF-GIPATLRGMVNN-DLKTTAEAVLSLVK 141 L FVS+S+ LK +L G+ RG+ + + + L + Sbjct: 100 HPLGDGNRTLIFVSWSMGATALKDILLSFDGLPGVGIVFRGIPDGMSMGDAVTKMHLLTQ 159 Query: 142 DGAT-DGVQIDPTLFSQYGIRTVPALVVFCSQG--YDIIRGNLRVGQALEKVAA--TGDC 196 + + V +DP F ++ + VP + + G+ V V GD Sbjct: 160 ETQSTVSVLLDPLAFQRHSVSAVPTVALEAPNDALIAKAAGSSSVSYIEGAVKEGKRGDL 219 Query: 197 RQVAHD 202 + Sbjct: 220 GTIGST 225 >UniRef50_A0L2Z3 Putative uncharacterized protein n=1 Tax=Shewanella sp. ANA-3 RepID=A0L2Z3_SHESA Length = 431 Score = 90.2 bits (222), Expect = 4e-17, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 68/228 (29%), Gaps = 26/228 (11%) Query: 2 KLSMKSLAALLMMLNGAVMASENVNTPE-NRQFLKQQENLSRQLR--EKPDHQLKAWAEK 58 + + SL + M A + + +Q +++ Q+ + + Q Sbjct: 8 RQFLVSLFVAVSMSAIYFDAMATDDNQQFILDAKRQMDDVRSQIEAMRQNNTQQPQGGLP 67 Query: 59 QVLENPLQRSDNHFLDELVRKQQASQDGKPRQ-------------GALYFVSFSIPEEGL 105 S L + + KP F SF +P L Sbjct: 68 AAWGQQSYISQAQMLTQQADAIRYQVLPKPEPVTPVVQQEIAANGEVFIFASFGMPAYTL 127 Query: 106 KRMLGETRHFGI--PATLRGMVNND--LKTTAEAVLSLVKD---GATDGVQIDPTLFSQY 158 K L + RG+ + L+ + A+ + + T V IDP LF+ Y Sbjct: 128 KSALRAASQSQVKTTVVFRGLKDESESLRDASNAIHRAIDEADLDVTPRVIIDPRLFNTY 187 Query: 159 GIRTVPALVVFCSQGYDIIRGNLRVGQAL---EKVAATGDCRQVAHDL 203 + P +V G + + E + +G +++ Sbjct: 188 AVEVAPTMVYRNGGKVVTATGLQSLEDFVKQSEGLLQSGSLGKLSDTY 235 >UniRef50_D2U0Q6 Conjugative transfer pilus assembly protein TraW n=1 Tax=Arsenophonus nasoniae RepID=D2U0Q6_9ENTR Length = 312 Score = 88.6 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 27/202 (13%), Positives = 74/202 (36%), Gaps = 17/202 (8%) Query: 24 NVNTPENRQFLKQQENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQAS 83 N + ++ + +++ + + +E Q + +L+N + D ++R+ Sbjct: 44 NESALKDIERMREAASAQAKKQESNARQTVNKKNQMILDNASKFKDEEA--RILRQMARD 101 Query: 84 QDGKPRQG-------ALYFVSFSIPEEGLKRMLGETR-HFGIPATLRGMVNN-DLKTTAE 134 +G+ + VS S+ ++ + ++ + ++G+ + L + Sbjct: 102 GNGENPKKEIIKGDVYYILVSASLDDKEILNIMDMAEDKENVELVVQGVKDKKTLVEEVK 161 Query: 135 AVLSLVK-DGATDGVQIDPTLFSQYGIRTVPALVVFCSQGYDIIRGNLRVGQALEK---- 189 L+K QIDP +F +Y +TVP ++ + + + L+ Sbjct: 162 HWHELIKSKEKIINFQIDPNIFIKYKAKTVPTIIHEKDGVMVAVVSGISNPKFLDGKTGD 221 Query: 190 VAATGDCRQVAHD-LLAGKGDS 210 + G + + +L + Sbjct: 222 LGTQGPAKSIVERNMLDLIKEG 243 >UniRef50_C1MEJ2 Pilus biogenesis protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MEJ2_9ENTR Length = 437 Score = 88.6 bits (218), Expect = 1e-16, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 52/155 (33%), Gaps = 6/155 (3%) Query: 37 QENLSRQLREKPDHQLKAWAEKQVLENPLQRSDNHFLDELVRKQQASQDGKPRQG--ALY 94 Q + Q + K E +N + D+ L + ++ G Sbjct: 85 QNVATDQATDTVKDNRKMMGEMPEYKNTDELVDDAVRGALAKSDMTNEKQNKPVGDFIYI 144 Query: 95 FVSFSIPEEGLKRMLGETR-HFGIPATLRGMVNN-DLKTTAEAVLSLVKDGATD-GVQID 151 VS S+ + + +L I ++G + +L L D + V +D Sbjct: 145 LVSASLSDAEITDILKLYDGRTDIALVVQGAKDKKNLLDELTHWQRLSFDSKSSLAVNLD 204 Query: 152 PTLFSQYGIRTVPALVVF-CSQGYDIIRGNLRVGQ 185 PT+F Y + +VP ++ + + G + Sbjct: 205 PTVFKNYNVSSVPTIIHEKDGELVARVTGIYDIAY 239 >UniRef50_B1WUF3 Putative uncharacterized protein n=4 Tax=Chroococcales RepID=B1WUF3_CYAA5 Length = 321 Score = 45.9 bits (107), Expect = 0.001, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 11/109 (10%) Query: 99 SIPEEGLKRMLGETRHFGIPATLRGMVNNDLKTTAEAVLSLVKDGATDGVQIDPTLFSQY 158 S+ + + ++ TL + TTA A +L + + P Sbjct: 7 SMVNSAMMNLFKNSKALLTVLTL-----GSVATTASATQALTLKVEVENLS--PLG---- 55 Query: 159 GIRTVPALVVFCSQGYDIIRGNLRVGQALEKVAATGDCRQVAHDLLAGK 207 G+ P V F +D G L + LE++A GD ++ D L Sbjct: 56 GVALTPVWVGFHDGSFDSYNGGLSSQRGLEQIAEDGDATTISQDFLNNL 104 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.306 0.128 0.307 Lambda K H 0.267 0.0395 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 935,993,008 Number of Sequences: 3077464 Number of extensions: 35200841 Number of successful extensions: 115101 Number of sequences better than 1.0e-01: 73 Number of HSP's better than 0.1 without gapping: 142 Number of HSP's successfully gapped in prelim test: 52 Number of HSP's that attempted gapping in prelim test: 114706 Number of HSP's gapped (non-prelim): 221 length of query: 212 length of database: 1,040,396,356 effective HSP length: 123 effective length of query: 89 effective length of database: 661,868,284 effective search space: 58906277276 effective search space used: 58906277276 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 90 (39.3 bits)