Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	L	S	R	I	S	A	I	N	W	N	K	I	S	D	D	K	D	L	E	V	W	N	R	L	T	S	N	F	W	L	P	E	K	V	P	L	S	N	D	I	P	A	W	Q	T	L	T	V	V	E	Q	Q	L	T	M	R	V	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	G	L	T	L	L	D	T	L	Q	N	V	I	G	A	P	S	L	M	P	D	A	L	T	P	H	E	E	A	V	L	S	N	I	S	F	M	E	A	V	H	A	R	S	Y	S	S	I	F	S	T	L	C	Q	T	K	D	V	D	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		A	Y	A	W	S	E	E	N	A	P	L	Q	R	K	A	Q	I	I	Q	Q	H	Y	R	G	D	D	P	L	K	K	K	I	A	S	V	F	L	E	S	F	L	F	Y	S	G	F	W	L	P	M	Y	F	S	S	R	G	K	L	T	N
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		T	A	D	L	I	R	L	I	I	R	D	E	A	V	H	G	Y	Y	I	G	Y	K	Y	Q	K	N	M	E	K	I	S	L	G	Q	R	E	E	L	K	S	F	A	F	D	L	L	L	E	L	Y	D	N	E	L	Q	Y	T	D	E	L
Secondary structure
SS confidence
Disorder																																		?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Y	A	E	T	P	W	A	D	D	V	K	A	F	L	C	Y	N	A	N	K	A	L	M	N	L	G	Y	E	P	L	F	P	A	E	M	A	E	V	N	P	A	I	L	A	A	L	S	P	N	A	D	E	N	H	D	F	F	S	G	S
Secondary structure
SS confidence
Disorder																																															?	?	?	?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Sequence		G	S	S	Y	V	M	G	K	A	V	E	T	E	D	E	D	W	N	F
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?	?	?		?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1oqu chain C Region: 4 - 296 Aligned: 290 Modelled: 290 Confidence: 100.0% Identity: 65% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1r2f chain A Region: 6 - 288 Aligned: 283 Modelled: 283 Confidence: 100.0% Identity: 87% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1r2f chain B Region: 6 - 286 Aligned: 281 Modelled: 281 Confidence: 100.0% Identity: 86% PDB header:oxidoreductase Chain: B: PDB Molecule:protein (ribonucleotide reductase r2); PDBTitle: ribonucleotide reductase r2f protein from salmonella2 typhimurium Phyre2 PDB 1uzr chain A Region: 5 - 286 Aligned: 282 Modelled: 282 Confidence: 100.0% Identity: 70% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 3dhz chain A domain 1 Region: 6 - 287 Aligned: 282 Modelled: 282 Confidence: 100.0% Identity: 66% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1yfd chain A Region: 4 - 285 Aligned: 277 Modelled: 282 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 1 beta PDBTitle: crystal structure of the y122h mutant of ribonucleotide2 reductase r2 protein from e. coli Phyre2 PDB 2rcc chain C Region: 4 - 282 Aligned: 278 Modelled: 279 Confidence: 100.0% Identity: 24% PDB header:oxidoreductase Chain: C: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta; PDBTitle: crystal structure of putative class i ribonucleotide reductase2 (np_241368.1) from bacillus halodurans at 1.90 a resolution Phyre2 PDB 1sms chain A Region: 11 - 306 Aligned: 275 Modelled: 292 Confidence: 100.0% Identity: 16% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1mxr chain A Region: 4 - 285 Aligned: 277 Modelled: 282 Confidence: 100.0% Identity: 24% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1syy chain A Region: 4 - 284 Aligned: 275 Modelled: 281 Confidence: 100.0% Identity: 20% PDB header:replication,oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase beta chain; PDBTitle: crystal structure of the r2 subunit of ribonucleotide reductase from2 chlamydia trachomatis Phyre2 PDB 1syy chain A Region: 4 - 284 Aligned: 275 Modelled: 281 Confidence: 100.0% Identity: 20% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1jk0 chain A Region: 13 - 285 Aligned: 262 Modelled: 269 Confidence: 100.0% Identity: 19% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 1h0o chain A Region: 10 - 285 Aligned: 265 Modelled: 276 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase; PDBTitle: cobalt substitution of mouse r2 ribonucleotide reductase to2 model the reactive diferrous state Phyre2 PDB 1smq chain D Region: 13 - 285 Aligned: 257 Modelled: 269 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase small chain PDBTitle: structure of the ribonucleotide reductase rnr2 homodimer2 from saccharomyces cerevisiae Phyre2 PDB 1w68 chain A Region: 11 - 281 Aligned: 260 Modelled: 267 Confidence: 100.0% Identity: 19% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 PDB 3hf1 chain B Region: 11 - 285 Aligned: 263 Modelled: 275 Confidence: 100.0% Identity: 21% PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 PDBTitle: crystal structure of human p53r2 Phyre2 PDB 2o1z chain A Region: 9 - 285 Aligned: 259 Modelled: 273 Confidence: 100.0% Identity: 18% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase subunit r2; PDBTitle: plasmodium vivax ribonucleotide reductase subunit r22 (pv086155) Phyre2 PDB 2p1i chain A Region: 16 - 283 Aligned: 252 Modelled: 264 Confidence: 100.0% Identity: 19% PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, small chain; PDBTitle: plasmodium yoelii ribonucleotide reductase subunit r2 (py03671) Phyre2 PDB 2vux chain B Region: 11 - 285 Aligned: 241 Modelled: 275 Confidence: 100.0% Identity: 20% PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 b; PDBTitle: human ribonucleotide reductase, subunit m2 b Phyre2 PDB 1jk0 chain B Region: 10 - 271 Aligned: 238 Modelled: 262 Confidence: 100.0% Identity: 15% Fold: Ferritin-like Superfamily: Ferritin-like Family: Ribonucleotide reductase-like Phyre2 1 d1oquc_ 2 d1r2fa_ 3 c1r2fB_ 4 d1uzra_ 5 d3dhza1 6 c1yfdA_ 7 c2rccC_ 8 d1smsa_ 9 d1mxra_ 10 c1syyA_ 11 d1syya_ 12 d1jk0a_ 13 c1h0oA_ 14 c1smqD_ 15 d1w68a_ 16 c3hf1B_ 17 c2o1zA_ 18 c2p1iA_ 19 c2vuxB_ 20 d1jk0b_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1oquc_ 100.0 65 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 2 d1r2fa_ 100.0 87 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 3 c1r2fB_ 100.0 86 PDB header:oxidoreductase Chain: B: PDB Molecule:protein (ribonucleotide reductase r2); PDBTitle: ribonucleotide reductase r2f protein from salmonella2 typhimurium 4 d1uzra_ 100.0 70 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 5 d3dhza1 100.0 66 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 6 c1yfdA_ 100.0 24 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase 1 beta PDBTitle: crystal structure of the y122h mutant of ribonucleotide2 reductase r2 protein from e. coli 7 c2rccC_ 100.0 24 PDB header:oxidoreductase Chain: C: PDB Molecule:ribonucleoside-diphosphate reductase subunit beta; PDBTitle: crystal structure of putative class i ribonucleotide reductase2 (np_241368.1) from bacillus halodurans at 1.90 a resolution 8 d1smsa_ 100.0 16 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 9 d1mxra_ 100.0 24 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 10 c1syyA_ 100.0 20 PDB header:replication,oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase beta chain; PDBTitle: crystal structure of the r2 subunit of ribonucleotide reductase from2 chlamydia trachomatis 11 d1syya_ 100.0 20 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 12 d1jk0a_ 100.0 19 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 13 c1h0oA_ 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleoside-diphosphate reductase; PDBTitle: cobalt substitution of mouse r2 ribonucleotide reductase to2 model the reactive diferrous state 14 c1smqD_ 100.0 19 PDB header:oxidoreductase Chain: D: PDB Molecule:ribonucleoside-diphosphate reductase small chain PDBTitle: structure of the ribonucleotide reductase rnr2 homodimer2 from saccharomyces cerevisiae 15 d1w68a_ 100.0 19 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 16 c3hf1B_ 100.0 21 PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 PDBTitle: crystal structure of human p53r2 17 c2o1zA_ 100.0 18 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase subunit r2; PDBTitle: plasmodium vivax ribonucleotide reductase subunit r22 (pv086155) 18 c2p1iA_ 100.0 19 PDB header:oxidoreductase Chain: A: PDB Molecule:ribonucleotide reductase, small chain; PDBTitle: plasmodium yoelii ribonucleotide reductase subunit r2 (py03671) 19 c2vuxB_ 100.0 20 PDB header:oxidoreductase Chain: B: PDB Molecule:ribonucleoside-diphosphate reductase subunit m2 b; PDBTitle: human ribonucleotide reductase, subunit m2 b 20 d1jk0b_ 100.0 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 21 c3ee4A_ not modelled 100.0 16 PDB header:oxidoreductase Chain: A: PDB Molecule:probable ribonucleoside-diphosphate reductase; PDBTitle: r2-like ligand binding mn/fe oxidase from m. tuberculosis 22 d2inca1 not modelled 99.1 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 23 d1mhyd_ not modelled 99.0 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 24 d1mtyd_ not modelled 98.9 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 25 c3dhiA_ not modelled 98.9 12 PDB header:oxidoreductase Chain: A: PDB Molecule:toluene 4-monooxygenase hydroxylase alpha subunit; PDBTitle: crystal structure of reduced toluene 4-monoxygenase hydroxylase2 complexed with effector protein 26 c3chtA_ not modelled 98.7 12 PDB header:oxidoreductase Chain: A: PDB Molecule:p-aminobenzoate n-oxygenase; PDBTitle: crystal structure of di-iron aurf with partially bound ligand 27 c3dhgB_ not modelled 98.5 11 PDB header:oxidoreductase Chain: B: PDB Molecule:toluene 4-monooxygenase hydroxylase beta subunit; PDBTitle: crystal struture of toluene 4-monoxygenase hydroxylase 28 d1afra_ not modelled 98.3 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 29 c2innA_ not modelled 98.3 11 PDB header:oxidoreductase Chain: A: PDB Molecule:phenol hydroxylase component phn; PDBTitle: structure of the phenol hydroxyalse-regulatory protein2 complex 30 d2incb1 not modelled 98.1 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 31 d1za0a1 not modelled 98.1 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 32 c2inpD_ not modelled 98.0 11 PDB header:oxidoreductase Chain: D: PDB Molecule:phenol hydroxylase component phl; PDBTitle: structure of the phenol hydroxylase-regulatory protein2 complex 33 c3pw1A_ not modelled 97.4 11 PDB header:oxidoreductase Chain: A: PDB Molecule:phenylacetic acid degradation protein paaa; PDBTitle: the phenylacetyl-coa monooxygenase paaac subcomplex with phenylacetyl-2 coa 34 d1mhyb_ not modelled 96.1 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 35 c3pm5B_ not modelled 95.8 12 PDB header:oxidoreductase Chain: B: PDB Molecule:benzoyl-coa oxygenase component b; PDBTitle: crystal structure of boxb in mixed valent state with bound benzoyl-coa 36 c3qhbA_ not modelled 95.6 13 PDB header:metal transport Chain: A: PDB Molecule:symerythrin; PDBTitle: crystal structure of oxidized symerythrin from cyanophora paradoxa 37 d2fzfa1 not modelled 95.1 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 38 c2rd3A_ not modelled 92.2 7 PDB header:hydrolase Chain: A: PDB Molecule:transcriptional regulator; PDBTitle: crystal structure of tena homologue (hp1287) from2 helicobacter pylori 39 c2qcxA_ not modelled 91.6 6 PDB header:hydrolase Chain: A: PDB Molecule:transcriptional activator tena; PDBTitle: crystal structure of bacillus subtilis tena y112f mutant complexed2 with formyl aminomethyl pyrimidine 40 d1udda_ not modelled 91.4 7 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 41 d2oc5a1 not modelled 90.5 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:PMT1231-like 42 c2hr5B_ not modelled 90.4 14 PDB header:metal binding protein Chain: B: PDB Molecule:rubrerythrin; PDBTitle: pf1283- rubrerythrin from pyrococcus furiosus iron bound form 43 c3ddeB_ not modelled 90.2 10 PDB header:unknown function Chain: B: PDB Molecule:tena/thi-4 protein, domain of unknown function with a heme PDBTitle: crystal structure of a domain of unknown function with a heme2 oxygenase-like fold (sden_3740) from shewanella denitrificans os2173 at 2.30 a resolution 44 d1rtwa_ not modelled 90.1 14 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 45 c3bjdA_ not modelled 88.3 14 PDB header:transferase Chain: A: PDB Molecule:putative 3-oxoacyl-(acyl-carrier-protein) synthase; PDBTitle: crystal structure of putative 3-oxoacyl-(acyl-carrier-protein)2 synthase from pseudomonas aeruginosa 46 d1jkva_ not modelled 88.2 9 Fold:Ferritin-like Superfamily:Ferritin-like Family:Manganese catalase (T-catalase) 47 d1nnqa1 not modelled 86.4 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 48 d1yv1a1 not modelled 85.5 6 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 49 d1mtyb_ not modelled 85.3 8 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 50 d1lkoa1 not modelled 84.9 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 51 d1j30a_ not modelled 83.8 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 52 c3bknB_ not modelled 83.6 15 PDB header:metal binding protein Chain: B: PDB Molecule:bacterioferritin; PDBTitle: the structure of mycobacterial bacterioferritin 53 d1z72a1 not modelled 83.3 11 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 54 c1yuzB_ not modelled 80.4 7 PDB header:oxidoreductase Chain: B: PDB Molecule:nigerythrin; PDBTitle: partially reduced state of nigerythrin 55 d2fkza1 not modelled 79.4 11 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 56 d2cwla1 not modelled 79.2 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Manganese catalase (T-catalase) 57 c3oghB_ not modelled 79.1 11 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein ycie; PDBTitle: crystal structure of ycie protein from e. coli cft073, a member of2 ferritine-like superfamily of diiron-containing four-helix-bundle3 proteins 58 d1rcwa_ not modelled 77.7 10 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:PqqC-like 59 d1otka_ not modelled 76.4 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ribonucleotide reductase-like 60 d2htna1 not modelled 73.6 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 61 d1vjxa_ not modelled 72.3 13 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 62 c3oqlA_ not modelled 71.9 11 PDB header:transcription Chain: A: PDB Molecule:tena homolog; PDBTitle: crystal structure of a tena homolog (pspto1738) from pseudomonas2 syringae pv. tomato str. dc3000 at 2.54 a resolution 63 c3oqlB_ not modelled 71.8 9 PDB header:transcription Chain: B: PDB Molecule:tena homolog; PDBTitle: crystal structure of a tena homolog (pspto1738) from pseudomonas2 syringae pv. tomato str. dc3000 at 2.54 a resolution 64 c2qqyA_ not modelled 69.8 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:sigma b operon; PDBTitle: crystal structure of ferritin like, diiron-carboxylate proteins from2 bacillus anthracis str. ames 65 d1nf4a_ not modelled 67.7 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 66 d2gm8a1 not modelled 66.4 6 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 67 d2oh3a1 not modelled 64.4 10 Fold:Ferritin-like Superfamily:Ferritin-like Family:AMB4284-like 68 c1dvbA_ not modelled 62.9 13 PDB header:electron transport Chain: A: PDB Molecule:rubrerythrin; PDBTitle: rubrerythrin 69 c3gvyC_ not modelled 61.4 13 PDB header:metal binding protein Chain: C: PDB Molecule:bacterioferritin; PDBTitle: crystal structure of bacterioferritin from r.sphaeroides 70 d1jgca_ not modelled 60.1 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 71 c3r2rA_ not modelled 58.4 14 PDB header:metal binding protein Chain: A: PDB Molecule:bacterioferritin; PDBTitle: 1.65a resolution structure of iron soaked ftna from pseudomonas2 aeruginosa (ph 6.0) 72 c3mvuA_ not modelled 53.1 11 PDB header:transcription regulator Chain: A: PDB Molecule:tena family transcriptional regulator; PDBTitle: crystal structure of a tena family transcription regulator2 (tm1040_3656) from silicibacter sp. tm1040 at 1.80 a resolution 73 d1zpya1 not modelled 51.8 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:half-ferritin 74 c2vzbA_ not modelled 51.1 12 PDB header:metal transport Chain: A: PDB Molecule:putative bacterioferritin-related protein; PDBTitle: a dodecameric thioferritin in the bacterial domain, characterization2 of the bacterioferritin-related protein from bacteroides fragilis 75 d1yuza1 not modelled 48.1 8 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 76 c3no6B_ not modelled 43.9 8 PDB header:hydrolase Chain: B: PDB Molecule:transcriptional activator tena; PDBTitle: crystal structure of a putative thiaminase ii (se1693) from2 staphylococcus epidermidis atcc 12228 at 1.65 a resolution 77 c2hz8A_ not modelled 41.3 27 PDB header:de novo protein Chain: A: PDB Molecule:de novo designed diiron protein; PDBTitle: qm/mm structure refined from nmr-structure of a single2 chain diiron protein 78 c3rm5B_ not modelled 36.3 5 PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast 79 c1to9A_ not modelled 29.5 7 PDB header:biosynthetic protein Chain: A: PDB Molecule:thi-4 protein; PDBTitle: crystal structure of thi-4 protein from bacillus subtilis 80 d1to9a_ not modelled 29.5 7 Fold:Heme oxygenase-like Superfamily:Heme oxygenase-like Family:TENA/THI-4 81 c3ap3A_ not modelled 29.0 25 PDB header:transferase Chain: A: PDB Molecule:protein-tyrosine sulfotransferase 2; PDBTitle: crystal structure of human tyrosylprotein sulfotransferase-2 complexed2 with pap 82 c3fvbB_ not modelled 28.5 13 PDB header:metal binding protein Chain: B: PDB Molecule:bacterioferritin; PDBTitle: crystal structure of ferritin (bacterioferritin) from2 brucella melitensis 83 c3bvkC_ not modelled 28.1 13 PDB header:oxidoreductase Chain: C: PDB Molecule:ferritin; PDBTitle: structural basis for the iron uptake mechanism of helicobacter pylori2 ferritin 84 d1ee8a1 not modelled 27.2 13 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 85 d2za7a1 not modelled 26.5 12 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 86 c3qd8M_ not modelled 24.9 14 PDB header:metal binding protein Chain: M: PDB Molecule:probable bacterioferritin bfrb; PDBTitle: crystal structure of mycobacterium tuberculosis bfrb 87 c3hl1B_ not modelled 24.1 12 PDB header:metal binding protein Chain: B: PDB Molecule:ferritin like protein; PDBTitle: crystal structure of a ferritin like protein (cc_0557) from2 caulobacter vibrioides at 1.95 a resolution 88 d1k82a1 not modelled 21.6 16 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 89 d1mfra_ not modelled 21.2 14 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 90 d1r3ba_ not modelled 20.1 24 Fold:Bromodomain-like Superfamily:Mob1/phocein Family:Mob1/phocein 91 d1vk3a4 not modelled 19.7 26 Fold:PurM C-terminal domain-like Superfamily:PurM C-terminal domain-like Family:PurM C-terminal domain-like 92 d1r2za1 not modelled 18.1 15 Fold:S13-like H2TH domain Superfamily:S13-like H2TH domain Family:Middle domain of MutM-like DNA repair proteins 93 d1pi1a_ not modelled 17.7 24 Fold:Bromodomain-like Superfamily:Mob1/phocein Family:Mob1/phocein 94 d1lnla1 not modelled 16.8 14 Fold:Di-copper centre-containing domain Superfamily:Di-copper centre-containing domain Family:Hemocyanin middle domain 95 c3q4nA_ not modelled 16.8 8 PDB header:unknown function Chain: A: PDB Molecule:uncharacterized protein mj0754; PDBTitle: crystal structure of hypothetical protein mj0754 from methanococcus2 jannaschii dsm 2661 96 c1wx2A_ not modelled 16.5 23 PDB header:oxidoreductase/metal transport Chain: A: PDB Molecule:tyrosinase; PDBTitle: crystal structure of the oxy-form of the copper-bound streptomyces2 castaneoglobisporus tyrosinase complexed with a caddie protein3 prepared by the addition of hydrogenperoxide 97 d1uw0a_ not modelled 16.2 14 Fold:Glucocorticoid receptor-like (DNA-binding domain) Superfamily:Glucocorticoid receptor-like (DNA-binding domain) Family:PARP-type zinc finger 98 d1r03a_ not modelled 16.0 15 Fold:Ferritin-like Superfamily:Ferritin-like Family:Ferritin 99 c2zetD_ not modelled 15.7 28 PDB header:signaling protein Chain: D: PDB Molecule:melanophilin; PDBTitle: crystal structure of the small gtpase rab27b complexed with2 the slp homology domain of slac2-a/melanophilin

Binding site prediction

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If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Transmembrane helix prediction

Transmembrane helices have been predicted in your sequence to adopt the topology shown below

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0