BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (131 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P06627 Protein traY n=16 Tax=Enterobacteriaceae RepID=T... 271 4e-72 UniRef50_A6TIT2 OriT nicking n=2 Tax=Klebsiella pneumoniae subsp... 84 1e-15 UniRef50_P05836 Protein traY n=26 Tax=Enterobacteriaceae RepID=T... 68 1e-10 UniRef50_P05835 Protein traY n=7 Tax=root RepID=TRAY3_ECOLX 55 8e-07 UniRef50_Q6LW96 Putative sex pilus assembly and synthesis protei... 46 4e-04 UniRef50_Q4LC31 TraY protein n=1 Tax=Sodalis glossinidius RepID=... 39 0.061 >UniRef50_P06627 Protein traY n=16 Tax=Enterobacteriaceae RepID=TRAY1_ECOLI Length = 131 Score = 271 bits (694), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 131/131 (100%), Positives = 131/131 (100%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN 60 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN Sbjct: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN 60 Query: 61 IYGKSLVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFREA 120 IYGKSLVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFREA Sbjct: 61 IYGKSLVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFREA 120 Query: 121 DKEEDITFNTL 131 DKEEDITFNTL Sbjct: 121 DKEEDITFNTL 131 >UniRef50_A6TIT2 OriT nicking n=2 Tax=Klebsiella pneumoniae subsp. pneumoniae MGH 78578 RepID=A6TIT2_KLEP7 Length = 128 Score = 84.0 bits (206), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN 60 MKR R A G V + L A RSGR + E +R+ DHL ++P F Sbjct: 1 MKRLVNRPAAGSAVVFTCDDETYQHLTLAIRRSGRVKGTEVQLRVDDHLRKFPDFYDVQK 60 Query: 61 IYG--KSLVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEI 116 IY + K L +R D++TN++LI AKNRSG K+ E R+ HL++FPDFY+SE+ Sbjct: 61 IYCAEEKREKRLFLRFDEQTNKMLIKAKNRSGRSKSLEVYLRLKAHLLEFPDFYSSEV 118 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/55 (49%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 75 DDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYN-SEIFREADKEEDITF 128 DDET Q L A RSG K E RV DHL KFPDFY+ +I+ +K E F Sbjct: 19 DDETYQHLTLAIRRSGRVKGTEVQLRVDDHLRKFPDFYDVQKIYCAEEKREKRLF 73 >UniRef50_P05836 Protein traY n=26 Tax=Enterobacteriaceae RepID=TRAY4_ECOLX Length = 75 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 33/66 (50%), Positives = 45/66 (68%) Query: 66 LVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFREADKEED 125 + + +++ LD++TN LI AK+RSG KT E R+ DHL +FPDFYN EIFRE +E + Sbjct: 10 ISRTVSVYLDEDTNNRLIKAKDRSGRSKTIEVQIRLRDHLKRFPDFYNEEIFREVTEESE 69 Query: 126 ITFNTL 131 TF L Sbjct: 70 STFKEL 75 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/55 (43%), Positives = 34/55 (61%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKF 55 M+R R + V + L D + LI+A +RSGRS++ E IRL+DHL R+P F Sbjct: 1 MRRRNARGGISRTVSVYLDEDTNNRLIKAKDRSGRSKTIEVQIRLRDHLKRFPDF 55 >UniRef50_P05835 Protein traY n=7 Tax=root RepID=TRAY3_ECOLX Length = 75 Score = 55.1 bits (131), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 26/52 (50%), Positives = 34/52 (65%) Query: 74 LDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFREADKEED 125 LDD TN L+ A+ RSG KT+E R+ DHL +FPDFYN + +E +E D Sbjct: 18 LDDATNHKLLGARERSGRTKTNEVLVRLRDHLNRFPDFYNLDAIKEGAEETD 69 Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust. Identities = 23/55 (41%), Positives = 32/55 (58%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKF 55 M R R A G V L L L+ A RSGR+++ E ++RL+DHL+R+P F Sbjct: 1 MSRNIIRPAPGNKVLLVLDDATNHKLLGARERSGRTKTNEVLVRLRDHLNRFPDF 55 >UniRef50_Q6LW96 Putative sex pilus assembly and synthesis protein (TraY) n=1 Tax=Photobacterium profundum RepID=Q6LW96_PHOPR Length = 130 Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 36/91 (39%), Positives = 47/91 (51%), Gaps = 10/91 (10%) Query: 25 LLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGNIYGKSLVKY----LTMRLDDETNQ 80 LL E+ RS RS+ EA IRL DHL RY ++ Y ++Y +T L N+ Sbjct: 31 LLEESIGRSKRSKKKEAEIRLADHLDRYTLIPKSKCQYDSENIEYPSSHVTCFLAPTENE 90 Query: 81 LL---IAAKNRSGWCKTDEAADRVIDHLIKF 108 LL I N S K EAA R+ +HLI+F Sbjct: 91 LLDKTIVGLNPS---KKQEAAKRLTEHLIEF 118 >UniRef50_Q4LC31 TraY protein n=1 Tax=Sodalis glossinidius RepID=Q4LC31_SODGL Length = 74 Score = 38.5 bits (88), Expect = 0.061, Method: Compositional matrix adjust. Identities = 17/46 (36%), Positives = 29/46 (63%) Query: 11 GKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFN 56 K++ KL + +LL + ++G+SRS E + ++DHL R+P FN Sbjct: 11 NKLITFKLNQEYTALLYASIQKTGKSRSGEVKLWVQDHLKRFPDFN 56 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P06627 Protein traY n=16 Tax=Enterobacteriaceae RepID=T... 184 9e-46 UniRef50_A6TIT2 OriT nicking n=2 Tax=Klebsiella pneumoniae subsp... 148 5e-35 UniRef50_Q6LW96 Putative sex pilus assembly and synthesis protei... 96 4e-19 UniRef50_P05835 Protein traY n=7 Tax=root RepID=TRAY3_ECOLX 81 1e-14 UniRef50_P05836 Protein traY n=26 Tax=Enterobacteriaceae RepID=T... 81 2e-14 Sequences not found previously or not previously below threshold: UniRef50_A7MUK8 Putative uncharacterized protein n=3 Tax=Vibrio ... 52 4e-06 UniRef50_B2VB54 Putative TraY protein n=1 Tax=Erwinia tasmaniens... 47 2e-04 UniRef50_B8EFW0 Putative uncharacterized protein n=3 Tax=Shewane... 43 0.002 UniRef50_Q4LC31 TraY protein n=1 Tax=Sodalis glossinidius RepID=... 42 0.005 UniRef50_B6ICE9 Putative uncharacterized protein n=1 Tax=Escheri... 40 0.023 UniRef50_B6ESX2 Conjugative transfer protein TraY n=1 Tax=Aliivi... 40 0.025 UniRef50_A8QYN9 TraY protein n=1 Tax=Fluoribacter dumoffii RepID... 39 0.039 >UniRef50_P06627 Protein traY n=16 Tax=Enterobacteriaceae RepID=TRAY1_ECOLI Length = 131 Score = 184 bits (466), Expect = 9e-46, Method: Composition-based stats. Identities = 131/131 (100%), Positives = 131/131 (100%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN 60 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN Sbjct: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN 60 Query: 61 IYGKSLVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFREA 120 IYGKSLVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFREA Sbjct: 61 IYGKSLVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFREA 120 Query: 121 DKEEDITFNTL 131 DKEEDITFNTL Sbjct: 121 DKEEDITFNTL 131 >UniRef50_A6TIT2 OriT nicking n=2 Tax=Klebsiella pneumoniae subsp. pneumoniae MGH 78578 RepID=A6TIT2_KLEP7 Length = 128 Score = 148 bits (373), Expect = 5e-35, Method: Composition-based stats. Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN 60 MKR R A G V + L A RSGR + E +R+ DHL ++P F Sbjct: 1 MKRLVNRPAAGSAVVFTCDDETYQHLTLAIRRSGRVKGTEVQLRVDDHLRKFPDFYDVQK 60 Query: 61 IYG--KSLVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEI 116 IY + K L +R D++TN++LI AKNRSG K+ E R+ HL++FPDFY+SE+ Sbjct: 61 IYCAEEKREKRLFLRFDEQTNKMLIKAKNRSGRSKSLEVYLRLKAHLLEFPDFYSSEV 118 Score = 52.4 bits (124), Expect = 4e-06, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 75 DDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYN-SEIFREADKEEDITF 128 DDET Q L A RSG K E RV DHL KFPDFY+ +I+ +K E F Sbjct: 19 DDETYQHLTLAIRRSGRVKGTEVQLRVDDHLRKFPDFYDVQKIYCAEEKREKRLF 73 >UniRef50_Q6LW96 Putative sex pilus assembly and synthesis protein (TraY) n=1 Tax=Photobacterium profundum RepID=Q6LW96_PHOPR Length = 130 Score = 95.6 bits (236), Expect = 4e-19, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 10/115 (8%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN 60 M++ + + V L LL E+ RS RS+ EA IRL DHL RY ++ Sbjct: 7 MQKSKSDTYPTSHVTCFLSSFANKLLEESIGRSKRSKKKEAEIRLADHLDRYTLIPKSKC 66 Query: 61 IYGKSLVKY----LTMRLDDETNQLL---IAAKNRSGWCKTDEAADRVIDHLIKF 108 Y ++Y +T L N+LL I N S K EAA R+ +HLI+F Sbjct: 67 QYDSENIEYPSSHVTCFLAPTENELLDKTIVGLNPS---KKQEAAKRLTEHLIEF 118 >UniRef50_P05835 Protein traY n=7 Tax=root RepID=TRAY3_ECOLX Length = 75 Score = 81.3 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN 60 M R R A G V L L L+ A RSGR+++ E ++RL+DHL+R+P F Sbjct: 1 MSRNIIRPAPGNKVLLVLDDATNHKLLGARERSGRTKTNEVLVRLRDHLNRFPDFYNLDA 60 Query: 61 I 61 I Sbjct: 61 I 61 Score = 79.4 bits (194), Expect = 3e-14, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 70 LTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFREADKEEDITFN 129 + + LDD TN L+ A+ RSG KT+E R+ DHL +FPDFYN + +E +E D Sbjct: 14 VLLVLDDATNHKLLGARERSGRTKTNEVLVRLRDHLNRFPDFYNLDAIKEGAEETDSIIK 73 Query: 130 TL 131 L Sbjct: 74 DL 75 >UniRef50_P05836 Protein traY n=26 Tax=Enterobacteriaceae RepID=TRAY4_ECOLX Length = 75 Score = 80.6 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 33/66 (50%), Positives = 45/66 (68%) Query: 66 LVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFREADKEED 125 + + +++ LD++TN LI AK+RSG KT E R+ DHL +FPDFYN EIFRE +E + Sbjct: 10 ISRTVSVYLDEDTNNRLIKAKDRSGRSKTIEVQIRLRDHLKRFPDFYNEEIFREVTEESE 69 Query: 126 ITFNTL 131 TF L Sbjct: 70 STFKEL 75 Score = 69.4 bits (168), Expect = 3e-11, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNR 57 M+R R + V + L D + LI+A +RSGRS++ E IRL+DHL R+P F Sbjct: 1 MRRRNARGGISRTVSVYLDEDTNNRLIKAKDRSGRSKTIEVQIRLRDHLKRFPDFYN 57 >UniRef50_A7MUK8 Putative uncharacterized protein n=3 Tax=Vibrio harveyi RepID=A7MUK8_VIBHB Length = 316 Score = 52.4 bits (124), Expect = 4e-06, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%) Query: 15 KLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGNIYGKSLVKY---LT 71 KL L LL +AS RS RS EA +RL DH+ R+ N + + K + Sbjct: 10 KLTLDQQTYDLLNQASQRSFRSLKKEASLRLIDHVQRFHHSP--QNKLDEIVFKTSIKIP 67 Query: 72 MRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFR 118 +R+ L K + DE + R+ DHL ++P + +R Sbjct: 68 IRVRKSVVPCLYRGKYKV-KTLVDEYSIRLKDHLKRYPPYQRLVSYR 113 >UniRef50_B2VB54 Putative TraY protein n=1 Tax=Erwinia tasmaniensis RepID=B2VB54_ERWT9 Length = 81 Score = 47.1 bits (110), Expect = 2e-04, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 27/45 (60%) Query: 11 GKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKF 55 G V LKL ++ L +A++RSGRS + EA +RL DHL + Sbjct: 22 GMSVLLKLTPELTKKLSQAADRSGRSNTKEAYVRLDDHLKSFTDL 66 Score = 41.7 bits (96), Expect = 0.007, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 22/42 (52%) Query: 70 LTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDF 111 + ++L E + L A +RSG T EA R+ DHL F D Sbjct: 25 VLLKLTPELTKKLSQAADRSGRSNTKEAYVRLDDHLKSFTDL 66 >UniRef50_B8EFW0 Putative uncharacterized protein n=3 Tax=Shewanella baltica RepID=B8EFW0_SHEB2 Length = 92 Score = 43.2 bits (100), Expect = 0.002, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 21/39 (53%) Query: 14 VKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRY 52 V + L +L ++ R+ RS+ EA RL DHL R+ Sbjct: 41 VNVVLDGKTNEMLEASAKRNNRSKRKEAQARLIDHLSRF 79 Score = 40.5 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 26/40 (65%) Query: 69 YLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKF 108 ++ + LD +TN++L A+ R+ K EA R+IDHL +F Sbjct: 40 HVNVVLDGKTNEMLEASAKRNNRSKRKEAQARLIDHLSRF 79 >UniRef50_Q4LC31 TraY protein n=1 Tax=Sodalis glossinidius RepID=Q4LC31_SODGL Length = 74 Score = 42.4 bits (98), Expect = 0.005, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 37/74 (50%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN 60 M+ K++ KL + +LL + ++G+SRS E + ++DHL R+P FN Sbjct: 1 MRHQRRDDNPNKLITFKLNQEYTALLYASIQKTGKSRSGEVKLWVQDHLKRFPDFNPDSR 60 Query: 61 IYGKSLVKYLTMRL 74 KS + ++ L Sbjct: 61 EVMKSQITSESLSL 74 >UniRef50_B6ICE9 Putative uncharacterized protein n=1 Tax=Escherichia coli SE11 RepID=B6ICE9_ECOSE Length = 68 Score = 40.1 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 25/46 (54%) Query: 64 KSLVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFP 109 K V +T+ L ETN+ L+AA +G K+ EA R+ HL P Sbjct: 7 KKSVVSVTLLLRRETNEKLVAAAKAAGRSKSLEATLRLTQHLNSVP 52 >UniRef50_B6ESX2 Conjugative transfer protein TraY n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6ESX2_ALISL Length = 56 Score = 39.7 bits (91), Expect = 0.025, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 25/44 (56%) Query: 65 SLVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKF 108 + + +D + N LL +K SG K +EAA R+ DHL++F Sbjct: 2 KKETSVNIVMDQKCNHLLNISKETSGRTKRNEAAARLKDHLLRF 45 >UniRef50_A8QYN9 TraY protein n=1 Tax=Fluoribacter dumoffii RepID=A8QYN9_9GAMM Length = 80 Score = 39.3 bits (90), Expect = 0.039, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 26/51 (50%) Query: 2 KRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRY 52 + + + +L + LL E+ RSGR + EA +RL+DHL RY Sbjct: 3 SKSNNKKYPKVYISFQLSEEANKLLSESCMRSGRKKIPEAALRLEDHLIRY 53 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P06627 Protein traY n=16 Tax=Enterobacteriaceae RepID=T... 170 1e-41 UniRef50_A6TIT2 OriT nicking n=2 Tax=Klebsiella pneumoniae subsp... 137 1e-31 UniRef50_A7MUK8 Putative uncharacterized protein n=3 Tax=Vibrio ... 117 9e-26 UniRef50_Q6LW96 Putative sex pilus assembly and synthesis protei... 107 2e-22 UniRef50_P05835 Protein traY n=7 Tax=root RepID=TRAY3_ECOLX 82 6e-15 UniRef50_P05836 Protein traY n=26 Tax=Enterobacteriaceae RepID=T... 78 1e-13 UniRef50_B2VB54 Putative TraY protein n=1 Tax=Erwinia tasmaniens... 63 3e-09 Sequences not found previously or not previously below threshold: UniRef50_B8EFW0 Putative uncharacterized protein n=3 Tax=Shewane... 47 2e-04 UniRef50_C8Q8D9 Putative TraY protein n=1 Tax=Pantoea sp. At-9b ... 47 3e-04 UniRef50_A8QYN9 TraY protein n=1 Tax=Fluoribacter dumoffii RepID... 46 5e-04 UniRef50_Q4LC31 TraY protein n=1 Tax=Sodalis glossinidius RepID=... 45 0.001 UniRef50_B6ESX2 Conjugative transfer protein TraY n=1 Tax=Aliivi... 40 0.026 UniRef50_B6ICE9 Putative uncharacterized protein n=1 Tax=Escheri... 38 0.079 >UniRef50_P06627 Protein traY n=16 Tax=Enterobacteriaceae RepID=TRAY1_ECOLI Length = 131 Score = 170 bits (431), Expect = 1e-41, Method: Composition-based stats. Identities = 131/131 (100%), Positives = 131/131 (100%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN 60 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN Sbjct: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN 60 Query: 61 IYGKSLVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFREA 120 IYGKSLVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFREA Sbjct: 61 IYGKSLVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFREA 120 Query: 121 DKEEDITFNTL 131 DKEEDITFNTL Sbjct: 121 DKEEDITFNTL 131 >UniRef50_A6TIT2 OriT nicking n=2 Tax=Klebsiella pneumoniae subsp. pneumoniae MGH 78578 RepID=A6TIT2_KLEP7 Length = 128 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 48/118 (40%), Positives = 66/118 (55%), Gaps = 2/118 (1%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN 60 MKR R A G V + L A RSGR + E +R+ DHL ++P F Sbjct: 1 MKRLVNRPAAGSAVVFTCDDETYQHLTLAIRRSGRVKGTEVQLRVDDHLRKFPDFYDVQK 60 Query: 61 IYG--KSLVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEI 116 IY + K L +R D++TN++LI AKNRSG K+ E R+ HL++FPDFY+SE+ Sbjct: 61 IYCAEEKREKRLFLRFDEQTNKMLIKAKNRSGRSKSLEVYLRLKAHLLEFPDFYSSEV 118 Score = 48.2 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 27/55 (49%), Positives = 31/55 (56%), Gaps = 1/55 (1%) Query: 75 DDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSE-IFREADKEEDITF 128 DDET Q L A RSG K E RV DHL KFPDFY+ + I+ +K E F Sbjct: 19 DDETYQHLTLAIRRSGRVKGTEVQLRVDDHLRKFPDFYDVQKIYCAEEKREKRLF 73 >UniRef50_A7MUK8 Putative uncharacterized protein n=3 Tax=Vibrio harveyi RepID=A7MUK8_VIBHB Length = 316 Score = 117 bits (294), Expect = 9e-26, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%) Query: 15 KLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGNIYGKSLVKY---LT 71 KL L LL +AS RS RS EA +RL DH+ R+ N + + K + Sbjct: 10 KLTLDQQTYDLLNQASQRSFRSLKKEASLRLIDHVQRFHHSP--QNKLDEIVFKTSIKIP 67 Query: 72 MRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFR 118 +R+ L K + DE + R+ DHL ++P + +R Sbjct: 68 IRVRKSVVPCLYRGKYKV-KTLVDEYSIRLKDHLKRYPPYQRLVSYR 113 >UniRef50_Q6LW96 Putative sex pilus assembly and synthesis protein (TraY) n=1 Tax=Photobacterium profundum RepID=Q6LW96_PHOPR Length = 130 Score = 107 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 4/112 (3%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN 60 M++ + + V L LL E+ RS RS+ EA IRL DHL RY ++ Sbjct: 7 MQKSKSDTYPTSHVTCFLSSFANKLLEESIGRSKRSKKKEAEIRLADHLDRYTLIPKSKC 66 Query: 61 IYGKSLVKY----LTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKF 108 Y ++Y +T L N+LL K EAA R+ +HLI+F Sbjct: 67 QYDSENIEYPSSHVTCFLAPTENELLDKTIVGLNPSKKQEAAKRLTEHLIEF 118 >UniRef50_P05835 Protein traY n=7 Tax=root RepID=TRAY3_ECOLX Length = 75 Score = 81.7 bits (200), Expect = 6e-15, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 33/61 (54%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN 60 M R R A G V L L L+ A RSGR+++ E ++RL+DHL+R+P F Sbjct: 1 MSRNIIRPAPGNKVLLVLDDATNHKLLGARERSGRTKTNEVLVRLRDHLNRFPDFYNLDA 60 Query: 61 I 61 I Sbjct: 61 I 61 Score = 81.0 bits (198), Expect = 1e-14, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 37/62 (59%) Query: 70 LTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFREADKEEDITFN 129 + + LDD TN L+ A+ RSG KT+E R+ DHL +FPDFYN + +E +E D Sbjct: 14 VLLVLDDATNHKLLGARERSGRTKTNEVLVRLRDHLNRFPDFYNLDAIKEGAEETDSIIK 73 Query: 130 TL 131 L Sbjct: 74 DL 75 >UniRef50_P05836 Protein traY n=26 Tax=Enterobacteriaceae RepID=TRAY4_ECOLX Length = 75 Score = 77.5 bits (189), Expect = 1e-13, Method: Composition-based stats. Identities = 33/66 (50%), Positives = 45/66 (68%) Query: 66 LVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPDFYNSEIFREADKEED 125 + + +++ LD++TN LI AK+RSG KT E R+ DHL +FPDFYN EIFRE +E + Sbjct: 10 ISRTVSVYLDEDTNNRLIKAKDRSGRSKTIEVQIRLRDHLKRFPDFYNEEIFREVTEESE 69 Query: 126 ITFNTL 131 TF L Sbjct: 70 STFKEL 75 Score = 67.9 bits (164), Expect = 9e-11, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 34/57 (59%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNR 57 M+R R + V + L D + LI+A +RSGRS++ E IRL+DHL R+P F Sbjct: 1 MRRRNARGGISRTVSVYLDEDTNNRLIKAKDRSGRSKTIEVQIRLRDHLKRFPDFYN 57 >UniRef50_B2VB54 Putative TraY protein n=1 Tax=Erwinia tasmaniensis RepID=B2VB54_ERWT9 Length = 81 Score = 62.9 bits (151), Expect = 3e-09, Method: Composition-based stats. Identities = 19/45 (42%), Positives = 27/45 (60%) Query: 11 GKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKF 55 G V LKL ++ L +A++RSGRS + EA +RL DHL + Sbjct: 22 GMSVLLKLTPELTKKLSQAADRSGRSNTKEAYVRLDDHLKSFTDL 66 Score = 40.5 bits (93), Expect = 0.018, Method: Composition-based stats. Identities = 16/41 (39%), Positives = 22/41 (53%) Query: 70 LTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFPD 110 + ++L E + L A +RSG T EA R+ DHL F D Sbjct: 25 VLLKLTPELTKKLSQAADRSGRSNTKEAYVRLDDHLKSFTD 65 >UniRef50_B8EFW0 Putative uncharacterized protein n=3 Tax=Shewanella baltica RepID=B8EFW0_SHEB2 Length = 92 Score = 47.5 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 21/41 (51%) Query: 12 KMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRY 52 V + L +L ++ R+ RS+ EA RL DHL R+ Sbjct: 39 THVNVVLDGKTNEMLEASAKRNNRSKRKEAQARLIDHLSRF 79 >UniRef50_C8Q8D9 Putative TraY protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q8D9_9ENTR Length = 67 Score = 46.7 bits (109), Expect = 3e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 32/62 (51%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFNRAGN 60 M++ + + L ++ L +A+ RSGRS+S EA +RL DHL + + +G Sbjct: 1 MRKDKDDDYRAVALLVTLSPEMNRELSKAAERSGRSKSGEARLRLMDHLTFFSEIACSGK 60 Query: 61 IY 62 + Sbjct: 61 RF 62 >UniRef50_A8QYN9 TraY protein n=1 Tax=Fluoribacter dumoffii RepID=A8QYN9_9GAMM Length = 80 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 26/51 (50%) Query: 2 KRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRY 52 + + + +L + LL E+ RSGR + EA +RL+DHL RY Sbjct: 3 SKSNNKKYPKVYISFQLSEEANKLLSESCMRSGRKKIPEAALRLEDHLIRY 53 >UniRef50_Q4LC31 TraY protein n=1 Tax=Sodalis glossinidius RepID=Q4LC31_SODGL Length = 74 Score = 44.8 bits (104), Expect = 0.001, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 31/56 (55%) Query: 1 MKRFGTRSATGKMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPKFN 56 M+ K++ KL + +LL + ++G+SRS E + ++DHL R+P FN Sbjct: 1 MRHQRRDDNPNKLITFKLNQEYTALLYASIQKTGKSRSGEVKLWVQDHLKRFPDFN 56 >UniRef50_B6ESX2 Conjugative transfer protein TraY n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6ESX2_ALISL Length = 56 Score = 39.8 bits (91), Expect = 0.026, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 21/43 (48%) Query: 12 KMVKLKLPVDVESLLIEASNRSGRSRSFEAVIRLKDHLHRYPK 54 V + + LL + SGR++ EA RLKDHL R+ Sbjct: 5 TSVNIVMDQKCNHLLNISKETSGRTKRNEAAARLKDHLLRFQH 47 Score = 39.0 bits (89), Expect = 0.045, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 25/44 (56%) Query: 65 SLVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKF 108 + + +D + N LL +K SG K +EAA R+ DHL++F Sbjct: 2 KKETSVNIVMDQKCNHLLNISKETSGRTKRNEAAARLKDHLLRF 45 >UniRef50_B6ICE9 Putative uncharacterized protein n=1 Tax=Escherichia coli SE11 RepID=B6ICE9_ECOSE Length = 68 Score = 38.2 bits (87), Expect = 0.079, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 25/46 (54%) Query: 64 KSLVKYLTMRLDDETNQLLIAAKNRSGWCKTDEAADRVIDHLIKFP 109 K V +T+ L ETN+ L+AA +G K+ EA R+ HL P Sbjct: 7 KKSVVSVTLLLRRETNEKLVAAAKAAGRSKSLEATLRLTQHLNSVP 52 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.308 0.125 0.308 Lambda K H 0.267 0.0390 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 546,572,029 Number of Sequences: 3077464 Number of extensions: 15437399 Number of successful extensions: 52836 Number of sequences better than 1.0e-01: 17 Number of HSP's better than 0.1 without gapping: 36 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 52741 Number of HSP's gapped (non-prelim): 73 length of query: 131 length of database: 1,040,396,356 effective HSP length: 96 effective length of query: 35 effective length of database: 744,959,812 effective search space: 26073593420 effective search space used: 26073593420 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 87 (38.2 bits)