BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (269 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q46942 Uncharacterized protein yqeI n=36 Tax=Enterobact... 563 e-159 UniRef50_B7LP57 Putative regulatory protein n=2 Tax=Enterobacter... 270 3e-71 UniRef50_A6T554 Putative sensory transducer n=1 Tax=Klebsiella p... 240 3e-62 UniRef50_B4SXG5 Transcriptional regulatory protein, C n=31 Tax=S... 215 1e-54 UniRef50_C6UPQ2 Predicted protein n=12 Tax=Escherichia coli O157... 118 2e-25 UniRef50_UPI000182700F transcriptional regulatory protein, C n=1... 102 1e-20 UniRef50_UPI0001826357 putative regulatory protein n=1 Tax=Enter... 100 4e-20 UniRef50_C4SZK7 Putative uncharacterized protein n=1 Tax=Yersini... 89 1e-16 UniRef50_C4UHM9 Transcriptional regulatory protein, C n=1 Tax=Ye... 87 5e-16 UniRef50_C4SC03 Transcriptional regulatory protein n=2 Tax=Yersi... 83 9e-15 UniRef50_C4SUH9 Putative uncharacterized protein n=1 Tax=Yersini... 77 5e-13 UniRef50_B2VGK3 Putative transcriptional regulator n=1 Tax=Erwin... 72 2e-11 UniRef50_C4UJG3 Transcriptional regulator n=1 Tax=Yersinia rucke... 72 3e-11 UniRef50_Q7VR33 Transcriptional regulatory protein, C terminal d... 70 9e-11 UniRef50_Q2NSQ9 Putative uncharacterized protein n=1 Tax=Sodalis... 69 2e-10 UniRef50_B2VGZ0 Transcriptional regulatory protein n=1 Tax=Erwin... 68 3e-10 UniRef50_D0YIE0 Transcriptional regulator, CadC n=6 Tax=Klebsiel... 64 4e-09 UniRef50_A8GBW4 Transcriptional regulator, CadC n=1 Tax=Serratia... 61 4e-08 UniRef50_C4T4W9 DNA-binding winged-HTH domains n=1 Tax=Yersinia ... 61 4e-08 UniRef50_C4SV61 Putative uncharacterized protein n=1 Tax=Yersini... 60 6e-08 UniRef50_B2VCE9 Probable transcriptional regulator n=1 Tax=Erwin... 58 4e-07 UniRef50_C1MAT2 Predicted protein n=2 Tax=Citrobacter RepID=C1MA... 57 5e-07 UniRef50_Q1Z5R8 Transcription activator ToxR n=4 Tax=Photobacter... 56 2e-06 UniRef50_B1JQB0 Transcriptional regulator, CadC n=18 Tax=Yersini... 56 2e-06 UniRef50_C7BJK4 Putative membrane protein n=1 Tax=Photorhabdus a... 55 2e-06 UniRef50_D2TAS4 Cholera toxin transcriptional activator n=2 Tax=... 55 2e-06 UniRef50_UPI0001C33D1D hypothetical protein CATC2_20487 n=1 Tax=... 55 3e-06 UniRef50_C4SF84 DNA-binding winged-HTH domains n=1 Tax=Yersinia ... 55 3e-06 UniRef50_D2TQU5 Putative transcriptional regulator n=2 Tax=Enter... 55 4e-06 UniRef50_D2A9T6 Transcriptional regulator, CadC n=3 Tax=Shigella... 54 4e-06 UniRef50_B4TIC0 Putative uncharacterized protein n=33 Tax=Entero... 54 5e-06 UniRef50_B4EUN0 Putative membrane protein n=2 Tax=Proteus mirabi... 53 1e-05 UniRef50_D1P736 Putative transcriptional regulator with C-, effe... 53 1e-05 UniRef50_UPI00018266EF transcriptional regulator, CadC n=1 Tax=E... 52 1e-05 UniRef50_B5FBZ3 Toxin transcriptional activator ToxR n=3 Tax=Vib... 52 1e-05 UniRef50_P15795 Cholera toxin transcriptional activator n=121 Ta... 52 1e-05 UniRef50_A1JPG4 Possible reguatory protein n=5 Tax=Yersinia RepI... 52 2e-05 UniRef50_B2D6Y9 ToxR n=2 Tax=Vibrio cholerae RepID=B2D6Y9_VIBCH 52 2e-05 UniRef50_D2YQP0 Transmembrane regulatory protein ToxR n=7 Tax=Vi... 52 2e-05 UniRef50_B2Q575 Putative uncharacterized protein n=1 Tax=Provide... 52 2e-05 UniRef50_A7MIL4 Putative uncharacterized protein n=2 Tax=Cronoba... 52 2e-05 UniRef50_A8GJD8 Transcriptional regulator, CadC n=1 Tax=Serratia... 52 3e-05 UniRef50_C1MDX4 Putative uncharacterized protein n=1 Tax=Citroba... 51 4e-05 UniRef50_C4T6D4 DNA-binding winged-HTH domains n=1 Tax=Yersinia ... 51 4e-05 UniRef50_Q9RHQ9 Transmembrane regulatory protein ToxR n=2 Tax=Gr... 50 7e-05 UniRef50_A8GL29 Transcriptional regulator, CadC n=2 Tax=Serratia... 50 8e-05 UniRef50_Q8D287 YqeI protein n=1 Tax=Wigglesworthia glossinidia ... 50 1e-04 UniRef50_C4UIA8 Possible regulatory protein n=1 Tax=Yersinia ruc... 49 2e-04 UniRef50_D2A7F9 Membrane protein n=2 Tax=Shigella flexneri RepID... 49 2e-04 UniRef50_A8AP73 Putative uncharacterized protein n=1 Tax=Citroba... 49 2e-04 UniRef50_D1RR55 Transcriptional regulator, CadC n=1 Tax=Serratia... 48 3e-04 UniRef50_A6AKR5 Transcriptional regulatory protein, C n=3 Tax=Vi... 48 3e-04 UniRef50_A8GFV8 Transcriptional regulator, CadC n=1 Tax=Serratia... 48 3e-04 UniRef50_A8GL31 Transcriptional regulator, CadC n=1 Tax=Serratia... 48 4e-04 UniRef50_D0ZEM9 Putative uncharacterized protein n=1 Tax=Edwards... 47 5e-04 UniRef50_C4SAM2 Possible regulatory protein n=1 Tax=Yersinia mol... 47 7e-04 UniRef50_D0YZ11 Transcriptional activator ToxR n=1 Tax=Photobact... 47 7e-04 UniRef50_B1J1E8 Two component transcriptional regulator, LuxR fa... 47 8e-04 UniRef50_B5F706 Putative uncharacterized protein n=20 Tax=Salmon... 47 0.001 UniRef50_C5ZZN9 Putative uncharacterized protein n=1 Tax=Escheri... 46 0.002 UniRef50_A3UR88 Putative transcriptional activator ToxR n=3 Tax=... 45 0.003 UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax... 44 0.005 UniRef50_A9MR60 Putative uncharacterized protein n=11 Tax=Salmon... 44 0.005 UniRef50_B2VID6 Putative uncharacterized protein n=1 Tax=Erwinia... 44 0.005 UniRef50_B1HZ29 Sensory transduction protein n=3 Tax=Bacillaceae... 44 0.006 UniRef50_C2NAF5 Two-component response regulator n=2 Tax=Bacillu... 44 0.006 UniRef50_Q15PB9 Lysine decarboxylase transcriptional regulator, ... 44 0.008 UniRef50_B9TBN5 Putative uncharacterized protein n=1 Tax=Ricinus... 43 0.009 UniRef50_B3INB4 Transcriptional regulatory protein, C n=2 Tax=En... 43 0.011 UniRef50_C9PH99 Putative uncharacterized protein n=1 Tax=Vibrio ... 43 0.013 UniRef50_D1RYQ0 Transcriptional regulator, CadC n=1 Tax=Serratia... 42 0.015 UniRef50_C4K826 Putative regulatory membrane protein n=1 Tax=Can... 42 0.017 UniRef50_B6XAC7 Putative uncharacterized protein n=2 Tax=Provide... 42 0.030 UniRef50_Q2S7R1 DNA-binding winged-HTH domains n=1 Tax=Hahella c... 41 0.037 >UniRef50_Q46942 Uncharacterized protein yqeI n=36 Tax=Enterobacteriaceae RepID=YQEI_ECOLI Length = 269 Score = 563 bits (1452), Expect = e-159, Method: Compositional matrix adjust. Identities = 269/269 (100%), Positives = 269/269 (100%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE Sbjct: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA Sbjct: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK Sbjct: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG Sbjct: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 Query: 241 MIVMACNKNYNQHEVANCLTLSYREVNRD 269 MIVMACNKNYNQHEVANCLTLSYREVNRD Sbjct: 241 MIVMACNKNYNQHEVANCLTLSYREVNRD 269 >UniRef50_B7LP57 Putative regulatory protein n=2 Tax=Enterobacteriaceae RepID=B7LP57_ESCF3 Length = 307 Score = 270 bits (691), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 128/268 (47%), Positives = 176/268 (65%), Gaps = 7/268 (2%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 MYWIIN+ IEF P +KLIS N +LNVVLT+PASRCL LLLEA PDVV+QQ+ F +VWE Sbjct: 40 MYWIINEFIEFRPASKKLISRRNPELNVVLTSPASRCLLLLLEASPDVVSQQELFKKVWE 99 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 +EGM VPTNTLYQNISI+RRG +AVG+T +LIAT+PR+GFKI + I + ++D Sbjct: 100 DEGMYVPTNTLYQNISIVRRGLKAVGETEQTLIATIPRKGFKIEQGVKI----VRMASDE 155 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNN---KILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177 + +E + ++ + IML AF++GA ++ W++ Sbjct: 156 LFPEEEQEEEQTGNAEELLLPVNEHQQPRISLMSRLSLVFIMLLAFIVGATGMHFYWHSG 215 Query: 178 QPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKS 237 + PFF DYK + + NGCHF V +D+ DG F + KT I +G++CKK+PW+Y PL+K+ Sbjct: 216 ETTPFFADYKLLEQENGCHFYVKDDSHDGDNNFARIKTLITRTGLDCKKYPWVYLPLSKT 275 Query: 238 SPGMIVMACNKNYNQHEVANCLTLSYRE 265 PG+ V+ C K+Y H V C+TLS+RE Sbjct: 276 DPGLAVLVCKKDYLVHSVPGCMTLSFRE 303 >UniRef50_A6T554 Putative sensory transducer n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae MGH 78578 RepID=A6T554_KLEP7 Length = 274 Score = 240 bits (613), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 120/281 (42%), Positives = 173/281 (61%), Gaps = 25/281 (8%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 MYWIIN NIEFWPE+++LIS+ N +V LT PAS CL LLLEA P++V+QQ FF +VWE Sbjct: 1 MYWIINKNIEFWPENKRLISLKNPAQSVTLTAPASHCLVLLLEATPELVSQQVFFKKVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ---------- 110 +EG+ VP NTLYQNISI+RRG R VG+T +S++ TVPR+GF I+ ++N++ Sbjct: 61 DEGILVPANTLYQNISIVRRGLRDVGETDNSIVVTVPRKGFHINPNVNVERMDKKPLNSE 120 Query: 111 --NHVINSSTDAHTHNAP---PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVI 165 N + S D P P V +++IG + LIML + + Sbjct: 121 SYNDITIISQDDVAEKNPTTEPGDIVQTATRKNIGAKAT----------TFLIMLLSLLA 170 Query: 166 GAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCK 225 G S +++W+ + KPFF Y V GCHF +D + +F+ YK+ I SG++CK Sbjct: 171 GCLSFHYIWHFHDEKPFFSSYTLVENDRGCHFYTKDDNHAKVDKFNYYKSLIFKSGLDCK 230 Query: 226 KHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSYREV 266 K+P++YF +++ SPG IV C K+Y++ A C+TLS+R + Sbjct: 231 KYPFVYFSMSQMSPGFIVFICRKSYSEKVSAGCVTLSFRGI 271 >UniRef50_B4SXG5 Transcriptional regulatory protein, C n=31 Tax=Salmonella enterica RepID=B4SXG5_SALNS Length = 254 Score = 215 bits (548), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 109/267 (40%), Positives = 143/267 (53%), Gaps = 15/267 (5%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M WIINDNIEF PE +L S+ DLN++LTTPASRCL LLLE P VV+QQ FF +VWE Sbjct: 1 MLWIINDNIEFNPEMNRLASLSRPDLNIILTTPASRCLRLLLENAPSVVSQQTFFQKVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E+GM V NTLYQNISIIRRG R VG+ +LI TVPRRGF+I ++I + + Sbjct: 61 EDGMVVSANTLYQNISIIRRGLRTVGENEDTLIITVPRRGFQIEPGVSIMTIRKDFAQAI 120 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 P + + KH L M F +G W K Sbjct: 121 EKKGETPP---------------RMSGRWFKHYVPVLWMTGTFAVGILLGTISWQTVPDK 165 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 F+ Y V GCHF + I+ F YK+ IL +G++C+K+PW+YFP + +P Sbjct: 166 DFYDRYTLVETTQGCHFFSRNEDIESGSRFASYKSMILKTGMDCQKYPWVYFPSSSRTPA 225 Query: 241 MIVMACNKNYNQHEVANCLTLSYREVN 267 + + C + Y C+TL +R V Sbjct: 226 VTALICQQPYKTRGDTGCVTLFFRGVT 252 >UniRef50_C6UPQ2 Predicted protein n=12 Tax=Escherichia coli O157:H7 RepID=C6UPQ2_ECO5T Length = 270 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 88/276 (31%), Positives = 133/276 (48%), Gaps = 20/276 (7%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIND + F KL S+ ++ V+LT PA +CL LLL+ VV+ FF +VW Sbjct: 1 MIYIINDEVRFNSSSNKLTSLLTSE-EVILTYPAGKCLKLLLDNAYSVVSHNQFFEKVWS 59 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTT--HSLIATVPRRGFKIHNDINIQNHVINSST 118 + V TNTLYQNIS+IRR FR + T + +I TVPR+GFKI+ +I+I V++++ Sbjct: 60 DSSADVATNTLYQNISMIRRSFREISSATIFNDVIRTVPRKGFKINEEISIT--VLDNN- 116 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFV---IGAYSAYWLWN 175 H N + N + E+I KN K + K+ L+++ F I S+Y+ Sbjct: 117 --HNENESVESEENGTHTENIN--KNHIAKGIFTTKNTLLIVCFFAAWGIVYISSYFFDM 172 Query: 176 NNQPKPF-------FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHP 228 Q K F +Y GC + + + ++ INCK HP Sbjct: 173 AFQSKSHTIKKIDAFSNYAQHPTQEGCSYFYDNKYFNSVDMLSPIIEKLQKMEINCKIHP 232 Query: 229 WLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSYR 264 ++Y S G C++ N NC +L Y+ Sbjct: 233 YIYIATNDSMSGFYAFTCSQMLNSESPNNCNSLYYK 268 >UniRef50_UPI000182700F transcriptional regulatory protein, C n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI000182700F Length = 269 Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 72/266 (27%), Positives = 114/266 (42%), Gaps = 28/266 (10%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++IIN+ +EF P L ++N D VVL +PA RCL LL+E +V QQDF VW+ Sbjct: 4 HYIINNIVEFHPAASTLRDINNPDRVVVLNSPAGRCLLLLIERAGSIVTQQDFLDIVWQR 63 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 GM V NT YQNISI+R+G + +G ++ T+PR G + +D I VI Sbjct: 64 RGMLVSPNTYYQNISILRKGLKKIGFDVDPIV-TIPRIGLTLASDTQI---VIKEPATPA 119 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLW------- 174 A P V + + N + + + + + ++ G + Sbjct: 120 PEMAVPETAVQQDTADLRLNEEPGENALPE--RDSRLARARWLAGMLMILLVLLMSVGII 177 Query: 175 --NNNQPKPFFKDYKTVAEINGCH------FNVTEDTIDGLKEFDKYKTRILDSGINCKK 226 +N + F +DY I CH + L D++K C Sbjct: 178 GHSNARENRFIEDYHFATTIGACHVWLAKGIQTQSERAKALAYVDQFKA-------ECAD 230 Query: 227 HPWLYFPLAKSSPGMIVMACNKNYNQ 252 +PW+Y + P V+ C+K+ + Sbjct: 231 YPWIYISWYELLPRASVIRCDKSMKE 256 >UniRef50_UPI0001826357 putative regulatory protein n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001826357 Length = 265 Score = 100 bits (250), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 76/267 (28%), Positives = 126/267 (47%), Gaps = 16/267 (5%) Query: 3 WIINDNIEFWPEHRKLISVHN-ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++IND++ F P+ R+L D V+L P S CL LLLE +V+ Q+ F+ VWE+ Sbjct: 5 FLINDSVLFEPDKRRLCPRDGYPDRAVLLHGPVSECLLLLLEHNGEVLTQRYLFSAVWEK 64 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---IQNHVINSST 118 +G V TN LYQ I+ IR+ ++VG +++ TVP+ GFK + ++ ++ +T Sbjct: 65 QGAIVTTNALYQTIASIRKALKSVG-LAENIVQTVPKEGFKAVAALQSGTLEEFILPVAT 123 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178 A P K F++KI I + L ++S FV+ L + Sbjct: 124 -APKDGQPEEEKAYLPAPVVRPRKSLFSSKIAYGIAALLFLVSCFVL----YQQLKPGDA 178 Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSS 238 P F DY + + GC +V D ++ +K+ + + + C +Y L Sbjct: 179 P---FADYHFIGNVEGC--DVYSSLHDKMQSQNKFTSLVKRYPVQCSAGGRVYITLNHYQ 233 Query: 239 PGMIVMACNKNYNQHEVANCLTLSYRE 265 G V+ C+K + A C ++ YRE Sbjct: 234 QGTSVIVCDKQADLAG-AQCESILYRE 259 >UniRef50_C4SZK7 Putative uncharacterized protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4SZK7_YERIN Length = 247 Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 24/232 (10%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 IIN + + + + +++ + +V L P + CL +LL+ +P+V+ Q FF + WE++G Sbjct: 6 IINKIVAYDYNNAIIYNINKPEKSVSLYAPTNECLYILLDQYPNVIPQNYFFEQAWEKQG 65 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 + N YQ+IS+IRR F VG +I T+PRRG + D+ I H Sbjct: 66 LTTTNNNFYQHISMIRRAFEVVG-LNGDIILTLPRRGLSLSKDLEI----------THEE 114 Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP-KPF 182 K E+ A NN +L+ S +++S +I +S L+N P + Sbjct: 115 KKRQDKKEEIVIDETSNNA-TINNSMLR--ASLWVVVSILIITLFSI-LLYNKKSPYEKS 170 Query: 183 FKDYKTVAEINGCH-FNVTED-TIDGLKEFDKYKTRILDSGINCKKHPWLYF 232 ++Y V +I CH F+++E + +KE K + INC K LY+ Sbjct: 171 IENYNHVEDIELCHLFSLSEGYDVSNVKEIIK------NEKINCNKVKNLYY 216 >UniRef50_C4UHM9 Transcriptional regulatory protein, C n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UHM9_YERRU Length = 300 Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 76/271 (28%), Positives = 128/271 (47%), Gaps = 48/271 (17%) Query: 18 LISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISI 77 L +++N V LTTPA+ CL ++ +VV+Q+ FFT VWE G + +NT YQNISI Sbjct: 20 LYNINNKSEMVFLTTPANHCLLIITNNRHEVVSQRTFFTEVWENHGAPINSNTFYQNISI 79 Query: 78 IRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNH--VINSSTDAHTHNAPPAIKV---- 131 IRR F+ +G T +I TVPRRG +I ++I I + + + ++ A + +V Sbjct: 80 IRRAFKQLG-LTEDVIVTVPRRGVRIGSNIEISSFPPISGQTPESMVLIAKESAEVSKQD 138 Query: 132 --NAGYKESIGGAKNF----------------------NNKILKHIKS---------HLI 158 + Y+E + KNF N+ L+ +K+ H++ Sbjct: 139 NEDTQYQEDV---KNFTHNHSDNRIVEERGDFYYSGSNNSSFLRLVKTIPSIWDVNYHIV 195 Query: 159 MLSAFV-IGAYSAYWLWNNNQPKPFFKDYKTVAEINGCH-FNVTEDTIDGLKEFDKYKTR 216 + F+ I A+SA + K F DYK+ + C F+ I+ K + Sbjct: 196 IAFIFLAIMAFSASVFDSYFYSKSRFYDYKSSFLLEQCDVFSQISRDIEIRKSVEH---M 252 Query: 217 ILDSGINCKKHPWLYFPLAKSSPGMIVMACN 247 I + I+C++ +YF + P + ++ C+ Sbjct: 253 IKINNISCQEPKRVYFSSFPALPRLSLIVCD 283 >UniRef50_C4SC03 Transcriptional regulatory protein n=2 Tax=Yersinia RepID=C4SC03_YERMO Length = 281 Score = 83.2 bits (204), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 67/275 (24%), Positives = 117/275 (42%), Gaps = 23/275 (8%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 +IIN + F + +L + + L P SRCL LLL+ V++Q +F VWE + Sbjct: 8 FIINGKVCFLSDEHRLEPLGEQGSAISLNVPVSRCLLLLLQRKGSVISQSEFVYEVWESK 67 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 G NT +QNI ++R+ + G S+I TVP+ G + + N + ST T Sbjct: 68 GQFANANTYFQNIHLLRKALKTSG-IEESIIKTVPKEGIRFTGTVTYLNESNSESTAELT 126 Query: 123 HN--------------APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY 168 N AP I V K A F+++ + +IK ++ + Sbjct: 127 ENETRNIANEASADKQAPDVIDV----KMQPPFAPFFSSQKMLYIKIFFVLGLLSIFILL 182 Query: 169 SAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHP 228 + + N+ FF +Y+ + E+N C + +I L +Y + + +C+ Sbjct: 183 LLNFHKDTNKNTDFFSNYQLIGEVNQCKVYASNTSI--LWPRSEYLDFVKNKNTSCQPGQ 240 Query: 229 WLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSY 263 Y + ++ C+K+ + A+CLT Y Sbjct: 241 VAYIAMNIFRTRALIHICDKSVSN--TASCLTKLY 273 >UniRef50_C4SUH9 Putative uncharacterized protein n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SUH9_YERFR Length = 267 Score = 77.4 bits (189), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 60/264 (22%), Positives = 119/264 (45%), Gaps = 21/264 (7%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + INDNI F+PE ++S + + P ++ L + +++Q D ++ W + Sbjct: 5 YTINDNITFYPE-SGILSSSLGGARIKINVPTAQLLEAFVNRVGLIISQSDLYSIAWGDN 63 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 G+ V NTLYQNIS++R+ + +G + + I TV +GF I V D Sbjct: 64 GVNVTPNTLYQNISLLRKALQDIGLSGEA-ITTVRGKGF-----IFTVTKVTECEIDIDP 117 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKH---IKSHLIMLSAFVIGAYSAYWLWNNNQP 179 + I E+I + + K+ I + +++ ++ +I + ++ + + P Sbjct: 118 EDDEIII-------ENIVPQQQDEKLVTKNKYKIYNIVLLFASVLIFFGAVFYFIHKSIP 170 Query: 180 KPFF---KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAK 236 K K++ +++I+GC T + L+ +K T + + C +P++Y Sbjct: 171 KRIIDYPKNFTFLSKIDGCSI-FTSTELHNLESQEKVNTFLSGQSLECNNYPYIYLNYTI 229 Query: 237 SSPGMIVMACNKNYNQHEVANCLT 260 P + V++C N + NC T Sbjct: 230 RHPTISVISCEFEVNYSKKNNCRT 253 >UniRef50_B2VGK3 Putative transcriptional regulator n=1 Tax=Erwinia tasmaniensis RepID=B2VGK3_ERWT9 Length = 301 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 72/299 (24%), Positives = 121/299 (40%), Gaps = 47/299 (15%) Query: 5 INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64 +N+ + F P+ +++ N V++ AS CL LL+E +V Q F+ VW G Sbjct: 16 LNNFLIFEPDKKRITGRGNP---AVISASASLCLELLIENVGLLVTHQQFYDYVWRRFGT 72 Query: 65 RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS----STDA 120 + TLYQNIS +RR G +I T+PR+GF + ++Q ++S ST+ Sbjct: 73 EPASTTLYQNISALRRALNKAG-LQEDIIRTMPRKGFLLSPQTSVQRESLSSFTPVSTEP 131 Query: 121 HTHNAPPA--------------IKVNAGYKESIGGAKNFNNK----------ILKHIKSH 156 N A ++ +ES G KNF LK K+ Sbjct: 132 ERANTLSAGGNEMPDPSPTDERMRTAQNKQESDSGNKNFLYSALTECHFFPAFLKSKKTM 191 Query: 157 LIMLSAFVIGAYSAYW-----LWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFD 211 + F+ +S+++ L N+ + +YK GC + + DG D Sbjct: 192 AVTFMLFLALLFSSFFYIRAGLNYNDAVFVYSTNYK------GC---IIFNNADGWLGKD 242 Query: 212 KYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSY-REVNRD 269 + K + + I C ++Y K + + C + H NC + Y + +N D Sbjct: 243 EVKKLVDEMKIKCSTTSYVYLTAFKHADSLSYFDCEHPLSGHVRTNCRSHYYVKNLNND 301 >UniRef50_C4UJG3 Transcriptional regulator n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UJG3_YERRU Length = 262 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 59/260 (22%), Positives = 111/260 (42%), Gaps = 22/260 (8%) Query: 5 INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64 IN+++ F+PE + S + + + P S+ + + V+Q + +T W E + Sbjct: 7 INNSVLFYPESGDIASSLTGN-TIKINMPTSQLFEVFITRMGVAVSQNELYTAAWGENSV 65 Query: 65 RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHN 124 V NTLYQNIS++R+ + G + SL T+ +GF I ++ H + D Sbjct: 66 NVTPNTLYQNISLLRKALQDSGIPSESL-KTLRGKGF-IFTVASVVEHCVEDIQDVKDSE 123 Query: 125 APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP---KP 181 P Y + K I + ++L++ +I + N P Sbjct: 124 ITPEKSEPTHYGK-------------KTIAYYSMLLTSLIIVFLGVLFYDYKNIPWRVNN 170 Query: 182 FFKDYKTVAEINGCH-FNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 + KD+ +++INGC FN TE + K + C+ +P++Y ++ Sbjct: 171 YPKDFVFISKINGCSIFNSTEG--KSIVNNQKINRLVKTLPAECESYPYVYISYSERHAT 228 Query: 241 MIVMACNKNYNQHEVANCLT 260 + +++C + N E +C T Sbjct: 229 VSIISCRYDMNYTEQNDCKT 248 >UniRef50_Q7VR33 Transcriptional regulatory protein, C terminal domain n=2 Tax=Candidatus Blochmannia RepID=Q7VR33_BLOFL Length = 212 Score = 69.7 bits (169), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 25/204 (12%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLE----AFPDVVAQQDFFT 56 M +II+ NI F L S+H++ ++ L+T A R L L++ P V ++ FT Sbjct: 1 MKYIIHSNIAFDTTEYILTSLHDSHASIKLSTSAGRILEELIKNRNTGLP--VTREHLFT 58 Query: 57 RVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS 116 VW+ G+ L Q +S+IR+ +G + S+I TVP+RG KI+N + I+ Sbjct: 59 TVWKTHGLEPSNGNLNQQVSLIRKTLTLLGLNSSSII-TVPKRGLKINNQLIIE------ 111 Query: 117 STDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKS---HLIMLSAFVIGAYSA--Y 171 H ++ P VN + I N ILK+ + ++++L+A +I +S Sbjct: 112 --AVHNNSPNPQSTVNP-IENQINNTPPLPNTILKNTITYVKYILILTAMLIIIFSIGFI 168 Query: 172 WLWNNNQPKPFFKDYKTVAEINGC 195 +L+N + EIN C Sbjct: 169 YLYNKTNNTKLY----CCKEINSC 188 >UniRef50_Q2NSQ9 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSQ9_SODGM Length = 270 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 75/282 (26%), Positives = 134/282 (47%), Gaps = 45/282 (15%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLE--AFPDVVAQQDFFTRV 58 M +IIN + F L V +AD +V L+ A R L L++ + V ++ F V Sbjct: 1 MKYIINSTVAFDTTEYLLTLVDDADTSVKLSNSAGRVLEELIQYRGTGEPVTREHLFASV 60 Query: 59 WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI--------Q 110 W G++ L Q +S+IR+G ++G S I T+P+RG K+++ + I Q Sbjct: 61 WSAHGLQPSNGNLNQQVSLIRKGLTSLG-LDASAIITIPKRGLKLNDQLVISTLEEDVFQ 119 Query: 111 NHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSA 170 I + + APP + ++ G +++I GA +L I + L ++ A++ Sbjct: 120 ATCIPAVNEFPMELAPP-VMLSRG-RKNINGALT----LLMVIVTLLTVIMAYI------ 167 Query: 171 YWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGIN----CKK 226 Y+ ++NQ K +F ++IN C T I GL++ D Y+ RI+++ CK Sbjct: 168 YYEDDDNQ-KLYFS-----SQINSCKV-YTFHPIPGLEKED-YRLRIVEAMKGNVEKCKN 219 Query: 227 HPWLYF-------PLAKSSPGM--IVMACNKNYNQHEVANCL 259 + + F PL + + + + C K+ + H ++NCL Sbjct: 220 NYIVIFSKTLIPDPLIQDNINVRTFMAKCRKDEDDH-ISNCL 260 >UniRef50_B2VGZ0 Transcriptional regulatory protein n=1 Tax=Erwinia tasmaniensis RepID=B2VGZ0_ERWT9 Length = 190 Score = 68.2 bits (165), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 1/104 (0%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 MY+I+N I+F+P+ +L ++ D ++VL+ PASR L L+ VV + VWE Sbjct: 7 MYFILNKTIKFYPDTNELAIINEQDNSIVLSKPASRLLLTLINHLNVVVTRDYLLKTVWE 66 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104 + G N LY IS +R+ F ++ + S++ TVP+ G ++ Sbjct: 67 DYGYTPSNNNLYMAISELRKSFSSL-NGGESILVTVPKVGLRLE 109 >UniRef50_D0YIE0 Transcriptional regulator, CadC n=6 Tax=Klebsiella RepID=D0YIE0_KLEVA Length = 224 Score = 64.3 bits (155), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 28 VVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGD 87 V L P +RCL LLL+ V+++ +F VWE G+ V NT YQNIS++R+ G Sbjct: 45 VSLNAPTARCLLLLLQNSGKVISRDEFLAAVWETRGVVVSQNTFYQNISLLRKSLLKAG- 103 Query: 88 TTHSLIATVPRRGFKIHND 106 + +I TV ++GF + D Sbjct: 104 LSADIIITVRQKGFSVAPD 122 >UniRef50_A8GBW4 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568 RepID=A8GBW4_SERP5 Length = 279 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 8/147 (5%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + +ND+I F + L +D + ++ P+ R L LL+ + V ++ F +VW+ Sbjct: 1 MKYRLNDHIIFDVDTGTLSLTELSDDPISISNPSKRLLLLLITHHGEAVGREVIFKKVWD 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ--NHVINSST 118 + GM N L Q +S +RR + +G +IATVP+ GF + +I ++ + NS T Sbjct: 61 DYGMVSGNNNLNQCVSKLRRVIKNLG-IEEEVIATVPKVGFMLRYEIIVEHCDGPENSFT 119 Query: 119 DAHTHNAP-----PAIKVNAGYKESIG 140 D T P P I +AG S+G Sbjct: 120 DEETSVIPHASVQPEIASSAGKPGSVG 146 >UniRef50_C4T4W9 DNA-binding winged-HTH domains n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4T4W9_YERIN Length = 290 Score = 61.2 bits (147), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 1/102 (0%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++IN I F P +KL+ +++ D+ V+L+ PA+R L ++ + + +WE Sbjct: 1 MKYLINYTIFFKPSEKKLMILNDEDIFVILSNPATRLLLEFIKHRNKAIDRITLLKDIWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFK 102 + G + L +S +R+ F+A+G++ +I T+P+ GF+ Sbjct: 61 DYGFTASNSNLNTYVSELRKAFKALGESPQ-VILTIPKHGFQ 101 >UniRef50_C4SV61 Putative uncharacterized protein n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SV61_YERFR Length = 258 Score = 60.5 bits (145), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 25/247 (10%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++IN ++ F+P + S+ + V L +P ++ L + ++Q + + W E+ Sbjct: 9 YVINGDVIFYPGSGIVSSLLTGN-TVKLNSPTAQLLEAFVSRVGITISQSELYNIAWGEK 67 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS---STD 119 G V NTLYQNIS++R+ + VG T S + TV +GF I+N N + Sbjct: 68 GSSVTPNTLYQNISLLRKALKDVGVTGES-VTTVRGKGFIFTMATVIENMTDNEIVKNIS 126 Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179 ++ K+ Y +GG +++L F I + Y++ + Sbjct: 127 LECNDNKTKKKMIIVYSIIMGGC-------------FILILLYFFIKSQPGYFVARKSDG 173 Query: 180 KPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239 F + E +++ + D + + D + L S C+ +P+LY L++ Sbjct: 174 FSF----SHINEKCFIYYDNSNDMNSIIPDIDVFLEGTLSS---CQVYPYLYISLSELHS 226 Query: 240 GMIVMAC 246 + + +C Sbjct: 227 TISLTSC 233 >UniRef50_B2VCE9 Probable transcriptional regulator n=1 Tax=Erwinia tasmaniensis RepID=B2VCE9_ERWT9 Length = 134 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 1/108 (0%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN I F L S++N+ V L+ P +R L+ L+ +++ ++D +VWE Sbjct: 1 MNYIINKKIYFNSLKGLLNSMNNSVPMVQLSKPGARLLAELIIHSGEIMTREDLIKKVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108 + + + L +IS++R+ F + D T +I TVP+ GF++ +I+ Sbjct: 61 DHNLTPSGSNLSNHISLLRKAFLQL-DMTERIIITVPKVGFRLEAEID 107 >UniRef50_C1MAT2 Predicted protein n=2 Tax=Citrobacter RepID=C1MAT2_9ENTR Length = 261 Score = 57.4 bits (137), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/262 (20%), Positives = 111/262 (42%), Gaps = 15/262 (5%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++I + I F P + L V + + + L AS CL LL++ VV+Q + W + Sbjct: 9 YLIENRIIFTPATQCLARVDHPNQRIKLKHSASLCLLLLIQHRGQVVSQNELLEFGWGKN 68 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 +V N YQ+I +R+ + LI T+PR+G I + +IQ + + + ++ Sbjct: 69 HRQVSFNAFYQSILSLRKS-LLQLELEQPLITTIPRKGLIIQEEFDIQ---VIETPEENS 124 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 +A ++ +A +E + A ++ ++ ++ L+ + W +++ + Sbjct: 125 ASAEESLAPDATIEEFL--ADTPRQPLITAAETVMLALTLIICVLILYPWQASDD----Y 178 Query: 183 FKDYKTVAEI-NGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGM 241 F Y T + GC + D F ++ I + C+ H ++Y S + Sbjct: 179 FSGYITADKAPTGCQYYFNNDA----SNFTRHTAFIDKNPGLCQSHKFIYITTYPESKKL 234 Query: 242 IVMACNKNYNQHEVANCLTLSY 263 V+ C + C ++ Y Sbjct: 235 SVLVCRSPIKARQENACQSVYY 256 >UniRef50_Q1Z5R8 Transcription activator ToxR n=4 Tax=Photobacterium RepID=Q1Z5R8_PHOPR Length = 291 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 5/103 (4%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++I F P LI H +D L + SR L LL+E ++ + VW E+ Sbjct: 8 YLIGQRFLFDPYDNSLIDQHESDELTRLGSNESRALGLLIEDPGAIITRNRLHDYVWREQ 67 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHS--LIATVPRRGFKI 103 G V ++L Q IS +R+ + D+T S I TVP+RG+++ Sbjct: 68 GFEVDDSSLTQAISTLRKALK---DSTKSPDFIKTVPKRGYQM 107 >UniRef50_B1JQB0 Transcriptional regulator, CadC n=18 Tax=Yersinia RepID=B1JQB0_YERPY Length = 250 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 21/106 (19%) Query: 4 IINDNIEFWPEHR------KLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTR 57 +IND + F P+ R K+ + N + S LSLL E +P+ ++++D R Sbjct: 5 VIND-VFFTPQKRTIDRNGKVTKIRNKE---------SELLSLLCEYYPEPISREDIEKR 54 Query: 58 VWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103 +W EG V NTL Q IS +R A+ D H L+ T+P++G++I Sbjct: 55 LW--EGSYVTDNTLTQTISNLR---HALDDKKHELVVTIPKKGYRI 95 >UniRef50_C7BJK4 Putative membrane protein n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BJK4_PHOAA Length = 312 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 13/186 (6%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++IN + F P+ + L +N V L+ PASR L++ + + ++D VWE Sbjct: 26 MKYVINIIVVFDPKEKTLALFNNPLNTVKLSNPASRLFLELIKNNGETIPREDLLKNVWE 85 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI------------N 108 + G + L IS IR+ A T ++I T+P+ GF++ DI N Sbjct: 86 DYGFTGSNSNLNSYISEIRKNL-ACLSTDLTVIKTIPKVGFRLEADIQVSLQESPEEENN 144 Query: 109 IQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY 168 +I S +D ++ + +V E+ ++ NN + K +K+ + + F+ Sbjct: 145 ADTDIIISESDINSLHRKDRPRVEDLEGENRVLKEHRNNHVNKWLKARIFLGIVFIFLLL 204 Query: 169 SAYWLW 174 S Y + Sbjct: 205 SFYVFY 210 >UniRef50_D2TAS4 Cholera toxin transcriptional activator n=2 Tax=Erwinia pyrifoliae RepID=D2TAS4_ERWPY Length = 146 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 29/110 (26%), Positives = 60/110 (54%), Gaps = 1/110 (0%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN + F + L N+D + L+ P +R L+ L+ +++ ++D +VWE Sbjct: 11 MNYIINHYLCFDSSNGLLKLTDNSDSTLQLSRPGTRLLTQLIIHAGEIMTREDLIKKVWE 70 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ 110 + + + L +IS++R+ F + T +I T+P+ GF++ ++I+ Sbjct: 71 DHDLTPSGSNLSNHISLLRKAFSQLA-VTEIMITTIPKVGFRLDAVVSIE 119 >UniRef50_UPI0001C33D1D hypothetical protein CATC2_20487 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI0001C33D1D Length = 257 Score = 55.1 bits (131), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 59/266 (22%), Positives = 103/266 (38%), Gaps = 20/266 (7%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++IN +EF P+++ L++ + L PAS C L+ D+V+Q T W E Sbjct: 2 YLINQLVEFNPDNKSLVNRQTGR-TIQLQLPASLCFLYLITHASDIVSQNTLMTVGWGER 60 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 NT YQ I +R VG + T+ RRG +++ +N + + TD + Sbjct: 61 NNVTTANTFYQAILTLRNALADVG-LPRDTVKTISRRGLRLN-----ENTQVEAITDLQS 114 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL-WNNNQP-K 180 +P ++ + I A + I I+ S ++ A WL W +P Sbjct: 115 DVSPLSVIEERAPAKIIPTAPQQPTQ----IAWWNILFSVGIVIATLVIWLVWYQTRPVM 170 Query: 181 PFFKDYKTVAEI---NGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKS 237 PF K +I C + + D F+ + C+ + ++ Sbjct: 171 PFSKFVSVSMQIPSRQNCKIYYSPNEYDQQGYFNLMQLH----PFLCENNKHVFLTGYLK 226 Query: 238 SPGMIVMACNKNYNQHEVANCLTLSY 263 + M+ C+K+ A C T Y Sbjct: 227 AERMVAFVCDKDARTDAHAFCTTHYY 252 >UniRef50_C4SF84 DNA-binding winged-HTH domains n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4SF84_YERMO Length = 276 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/270 (22%), Positives = 114/270 (42%), Gaps = 29/270 (10%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN N+++ L N + LT S L LL++ +++ + +WE Sbjct: 1 MEYIINGNVKYNSSDGTLFCPDNNIDMITLTRVTSELLLLLIKNNGAPLSRDTILSELWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---IQNHVINSS 117 + G+ +N L +S++R+ G T +LI T+P+ GF DI NH+ + Sbjct: 61 KRGLTASSNNLNNYVSMLRKALAQCGYT--NLIVTIPKHGFLFEADITEMGEDNHLTRTD 118 Query: 118 ------TDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171 T H + P A ++ +K S+ G F ++ I ++ F Y+ + Sbjct: 119 PKSVELTQRHEVDPPLASAISDHHKTSLSGF--FKGRVAVLILFFAVLTLLFSPSIYNYF 176 Query: 172 WLWNNNQPKPFFKDYKTVA-EINGCHFNVTEDTIDGLKEFDKYKT--RILDSG-INCKKH 227 L + +T+ I+ C + +DT L + T I+++G + C Sbjct: 177 RL----------QSLRTLLFNIDQCRIYLMDDTTRRLDSSNTISTIKMIINTGNLKCDSP 226 Query: 228 PWLYF--PLAKSSPGMIVMACNKNYNQHEV 255 +Y+ K S G ++M +Y +++ Sbjct: 227 ANVYYFADKKKDSSGHVIMTDMLSYCPYDI 256 >UniRef50_D2TQU5 Putative transcriptional regulator n=2 Tax=Enterobacteriaceae RepID=D2TQU5_CITRO Length = 242 Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 2/111 (1%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + I I F E L+++ D + L+ ++R L+ LL D++++ + F V++ Sbjct: 1 MRFDIEGFITFDTEDASLVNLLTGDC-IELSQTSTRLLAELLNHRGDILSRNEIFQSVFD 59 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQN 111 + G R + L Q IS +RR +G +I TVPR GFKI D + N Sbjct: 60 KYGARASNSNLNQYISTLRRNLSDLG-VKKEIIVTVPRIGFKISEDAIVNN 109 >UniRef50_D2A9T6 Transcriptional regulator, CadC n=3 Tax=Shigella flexneri RepID=D2A9T6_SHIF2 Length = 254 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++IIND I F P L +V+ D + A L++LLE+ V + V E Sbjct: 6 FFIINDAIIFDPNKCSLSNVNTQD-EINFPATAGCILAVLLESNGGAVDRNSIIDSVLER 64 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 + NTL Q IS++R+ F+ +G ++I T+P+ GF I +I I S D+H Sbjct: 65 FSFDLSNNTLNQYISLLRKSFKNIG-VEENVILTIPKVGFYISENITISKQ---SYDDSH 120 Query: 122 TH 123 Sbjct: 121 LQ 122 >UniRef50_B4TIC0 Putative uncharacterized protein n=33 Tax=Enterobacteriaceae RepID=B4TIC0_SALHS Length = 147 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 10/128 (7%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLE-AFPDVVAQQDFFTRVWEE 61 +IIN N + +L +V N+ + + +T ++CLS ++E A +++ +Q T +W Sbjct: 4 YIINSNCIYNEGKYELRTVSNSQV-IKMTAMRAKCLSFIIENAHLEIIERQKITTALWGS 62 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 V L Q + +IRR +A+G + L T+PR+G K+++DI I +TD+ Sbjct: 63 RSHYVNDANLTQILYLIRRDLKALG--INDLFITIPRQGLKVNSDIAI------IATDSE 114 Query: 122 THNAPPAI 129 T I Sbjct: 115 TKGRKKQI 122 >UniRef50_B4EUN0 Putative membrane protein n=2 Tax=Proteus mirabilis RepID=B4EUN0_PROMH Length = 274 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 61/108 (56%), Gaps = 3/108 (2%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++IND+I F+ + L S +L P+S+ L L+ ++V Q++ F W ++ Sbjct: 2 YLINDDIIFYSDKNLLFSKKLNKEKKILA-PSSKMLIHLITV-NELVTQRELFRIGWGDK 59 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ 110 + + YQNI ++R+ F + D ++ TVPR+G+ I+++I+I+ Sbjct: 60 EKFITNSAFYQNILLLRKAFNEL-DIDDEIVITVPRKGYIINHNISIE 106 >UniRef50_D1P736 Putative transcriptional regulator with C-, effector domain of the bipartite response regulator n=4 Tax=Providencia RepID=D1P736_9ENTR Length = 322 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 5/98 (5%) Query: 10 EFWPEHRKLISVHNADLN--VVLTTPASRCL-SLLLEAFPDVVAQQD-FFTRVWEEEGMR 65 +F E RK + DL+ V L+ PA+R +LL F +A +D T VWEE G+ Sbjct: 12 KFIFEQRKCLIYLKGDLDQSVELSKPAARLFGEILLLNFKKGIATRDELLTNVWEEYGLV 71 Query: 66 VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103 N L IS IR+ VG I TVP++GF+I Sbjct: 72 GSNNNLNTYISEIRKKLEQVG-IDPKTIVTVPKKGFRI 108 >UniRef50_UPI00018266EF transcriptional regulator, CadC n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI00018266EF Length = 184 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 6/108 (5%) Query: 25 DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84 D + +LT A+ + LL+ +VV ++ FF+ VW+ G++ N+L Q ISI+R+ Sbjct: 26 DAHQILTGTANAVMKLLVRHHGNVVERELFFSEVWDARGVQGSNNSLNQYISILRKLLAG 85 Query: 85 VGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA---PPAI 129 +++ TVP++GF + DI +Q + D H+ PPA+ Sbjct: 86 FVPEKPAIV-TVPKKGFMLSADIRVQP--MPDPADKHSDAPRCFPPAL 130 >UniRef50_B5FBZ3 Toxin transcriptional activator ToxR n=3 Tax=Vibrio fischeri RepID=B5FBZ3_VIBFM Length = 293 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 26/185 (14%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 II D F P LI N D + L SR LSLL++ VV++ + VW ++G Sbjct: 9 IIGDRFLFDPNDNSLIDTLNDDEIIRLGGNESRVLSLLIQEPGKVVSRHELHEYVWRDQG 68 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTH--SLIATVPRRGFKI----------------HN 105 V ++L Q IS +R+ + D T + TVP+RG++ Sbjct: 69 FEVDDSSLTQAISTLRKMLQ---DPTKLPVYVKTVPKRGYQFISTAVAQVDPDQKIEAET 125 Query: 106 DINIQNHVINSS---TDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIK--SHLIML 160 + N++N +N S T H +A A V +I N+ H+ ++++ Sbjct: 126 EHNVENTPLNDSLNNTSVHQDDAQEAQTVAPQQNATIHQPSTANSAPQAHLSLLGTIMLI 185 Query: 161 SAFVI 165 AFV+ Sbjct: 186 IAFVL 190 >UniRef50_P15795 Cholera toxin transcriptional activator n=121 Tax=Gammaproteobacteria RepID=TOXR_VIBCH Length = 294 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 6/130 (4%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 +I+ + F P LI +++ + L + SR L LL + +V+++ D VW E+ Sbjct: 20 FILAEKFTFDPLSNTLIDKEDSEEIIRLGSNESRILWLLAQRPNEVISRNDLHDFVWREQ 79 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHS--LIATVPRRGFKIHNDIN-IQNHVINSSTD 119 G V ++L Q IS +R+ + D+T S + TVP+RG+++ + ++ + S Sbjct: 80 GFEVDDSSLTQAISTLRKMLK---DSTKSPQYVKTVPKRGYQLIARVETVEEEMARESEA 136 Query: 120 AHTHNAPPAI 129 AH + P ++ Sbjct: 137 AHDISQPESV 146 >UniRef50_A1JPG4 Possible reguatory protein n=5 Tax=Yersinia RepID=A1JPG4_YERE8 Length = 219 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 10/99 (10%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVV-LTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 II +I F P R L N +V+ + S LSLL +PDV++++D ++W E Sbjct: 4 IIIGDIIFTPLKRTL----NKGGSVIKIRNKESEVLSLLCFHYPDVLSREDIEKKIWSES 59 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGF 101 V NTL Q IS +R A+ D H L+ T+P++G+ Sbjct: 60 --YVTDNTLTQTISNLR---HALNDKKHELVTTIPKKGY 93 >UniRef50_B2D6Y9 ToxR n=2 Tax=Vibrio cholerae RepID=B2D6Y9_VIBCH Length = 186 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 6/130 (4%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 +I+ + F P LI +++ + L + SR L LL + +V+++ D VW E+ Sbjct: 8 FILAEKFTFDPLSNTLIDKEDSEEIIRLGSNESRILWLLAQRPNEVISRNDLHDFVWREQ 67 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHS--LIATVPRRGFKIHNDIN-IQNHVINSSTD 119 G V ++L Q IS +R+ + D+T S + TVP+RG+++ + ++ + S Sbjct: 68 GFEVDDSSLTQAISTLRKMLK---DSTKSPQYVKTVPKRGYQLIARVETVEEEMARESEA 124 Query: 120 AHTHNAPPAI 129 AH + P + Sbjct: 125 AHDISQPECV 134 >UniRef50_D2YQP0 Transmembrane regulatory protein ToxR n=7 Tax=Vibrio RepID=D2YQP0_VIBMI Length = 280 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 5/108 (4%) Query: 18 LISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISI 77 LI N++ + L + SR L LL + +VV++ D VW E+G V ++L Q IS Sbjct: 24 LIDKENSEEIIRLGSNESRILWLLAQRPNEVVSRNDLHDFVWREQGFEVDDSSLTQAIST 83 Query: 78 IRRGFRAVGDTTHS--LIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 +R+ + D+T S + TVP+RG+++ + I + D TH Sbjct: 84 LRKMLK---DSTKSPQYVKTVPKRGYQLITRVETVEEEIQNDMDEVTH 128 >UniRef50_B2Q575 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q575_PROST Length = 329 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 3/106 (2%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLS--LLLEAFPDVVAQQDFFTRVWE 60 ++IN+ F + + D V L+ PASR L+ ++L + +++ +VWE Sbjct: 7 YLINNKFIFETGKNFIFIKNEVDKFVELSKPASRLLNEIIILNQKSKIATREELLIKVWE 66 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 E G+ N L IS IR+ F +G S I TVP++GF+ D Sbjct: 67 EYGLVGSNNNLNTYISEIRKKFELIGIDPKS-IVTVPKKGFRFDCD 111 >UniRef50_A7MIL4 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MIL4_ENTS8 Length = 148 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 4/106 (3%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLE-AFPDVVAQQDFFTRVWEE 61 ++IN N F + +L + NA + + +T+ +RCLS ++E A V+ +Q +W Sbjct: 4 YLINHNCIFTEANNELKNTDNACV-IKMTSMRARCLSFIIENAKNGVIEKQQIAAFLWGN 62 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI 107 G + L Q + ++RR RA+G + L T+P+ G K+++D+ Sbjct: 63 RGQFISDANLTQVLYLLRRDLRALG--INDLFVTIPKLGIKVNDDV 106 >UniRef50_A8GJD8 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568 RepID=A8GJD8_SERP5 Length = 267 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 52/237 (21%), Positives = 95/237 (40%), Gaps = 15/237 (6%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN +++ LI N+ + LT A+ L L + + + D +W Sbjct: 1 MEFIINRVLKYNSSDGTLICPDNSVDMITLTRVANELLFLFINNNHISLRRDDILNELWG 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND-INIQNHVINSSTD 119 + G+ +N L +S++RR G LI T+P+ GF D + + + ++ TD Sbjct: 61 KRGLSASSNNLNNYVSMLRRALEQCG--FAGLITTIPKYGFIFEADVVVVATNALSEDTD 118 Query: 120 AHTHN-APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178 N A ++ N K+ + F++ LK ++++ Y+ +N+ Sbjct: 119 QTDENEALASLVFNNEEKKINPKVRYFSSVTLKTAFVFMVIIMMLFSSQIYDYFYLKSNR 178 Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFD---KYKTRILDSGINCKKHPWLYF 232 + F + C F + +D I G E D K INC +Y+ Sbjct: 179 TEVF--------SMGKCTFYLIDDKIGGRVEEDVIHNMKVAAKKEKINCDVKSNVYY 227 >UniRef50_C1MDX4 Putative uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MDX4_9ENTR Length = 251 Score = 51.2 bits (121), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 2/109 (1%) Query: 9 IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68 +EF P+ + L++ + L PAS C L+ D+V+Q T W E T Sbjct: 2 VEFNPDSKSLVNRQTGRA-IQLQLPASLCFLYLITHASDIVSQNTLMTIGWGERNNVTTT 60 Query: 69 NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS 117 NT YQ I +R VG + T+ RRG +++ + ++ + S Sbjct: 61 NTFYQAILTLRNALADVG-LPRDTVKTISRRGLRLNENTQVETITLQQS 108 >UniRef50_C4T6D4 DNA-binding winged-HTH domains n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4T6D4_YERIN Length = 290 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 1/102 (0%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +I+N I F P + L+ +++ + V L+ PASR L ++ + + + VWE Sbjct: 1 MKYILNLTIVFNPSEKILMELNDEERAVTLSNPASRLLLEFIKHQNEPIERDVLLKNVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFK 102 + G + L +S +R+ A G+ +I T+P+ GF+ Sbjct: 61 DYGFTASNSNLNAYVSELRKALAAFGEDPQ-IITTIPKYGFQ 101 >UniRef50_Q9RHQ9 Transmembrane regulatory protein ToxR n=2 Tax=Grimontia hollisae RepID=Q9RHQ9_VIBHO Length = 292 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 5/112 (4%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 +++ + F P LI ++ D + L + R L +L+E +V + VW ++ Sbjct: 8 YLLGERFVFSPSDSSLIDLYENDDLIRLGSNECRVLMVLIEEPHAIVTRNRIHDFVWRKQ 67 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHS--LIATVPRRGFKIHNDINIQNH 112 G V ++L Q+IS +R+ + D+T S + TVP+RG+++ + + N Sbjct: 68 GFEVDDSSLTQSISTLRKSLK---DSTKSPMFVKTVPKRGYQVVCSVEVYNE 116 >UniRef50_A8GL29 Transcriptional regulator, CadC n=2 Tax=Serratia RepID=A8GL29_SERP5 Length = 255 Score = 50.1 bits (118), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 2/102 (1%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++IN I++ L ++ + ++L PA R LS+ + ++ ++ VWE Sbjct: 1 MIFVINKTIKYNEYEGTLENIDDPGNTILLVKPACRLLSIFVRNNDMLIKRKQLLDEVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFK 102 + G++ + L IS +RR + LI T PR+GFK Sbjct: 61 DYGLKATDSNLNNYISGLRRSLAKFDE--EELIITYPRQGFK 100 >UniRef50_Q8D287 YqeI protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D287_WIGBR Length = 267 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDV--VAQQDFFTRV 58 M +IIN + F L + ++ L+ A R L L++ + ++++ F + Sbjct: 1 MKYIINSLVIFDTIEYNLSLFKKKNKHIKLSHSAGRVLEELIKFHKNSSPISREYLFKNI 60 Query: 59 WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118 W G++ L Q IS+IR+G + +G S+I T+P++G K+++ + I+ N++ Sbjct: 61 WIIHGLQPSNGNLNQQISLIRKGLKHLG-LNSSVIVTIPKKGLKLNDKLKIKKLEKNNAK 119 Query: 119 D 119 D Sbjct: 120 D 120 >UniRef50_C4UIA8 Possible regulatory protein n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UIA8_YERRU Length = 260 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 8/94 (8%) Query: 8 NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 ++ F P+ R S+ + V L S L+LL E +PD V++ +W + V Sbjct: 46 DVSFIPKIR---SLELNGIEVKLRNKESEVLALLCECYPDPVSRDKIENSIWTDS--YVT 100 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGF 101 NTL Q IS +R A+ D H LI T+P++G+ Sbjct: 101 DNTLTQTISNLR---NALNDKKHELIITIPKKGY 131 >UniRef50_D2A7F9 Membrane protein n=2 Tax=Shigella flexneri RepID=D2A7F9_SHIF2 Length = 201 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 8/120 (6%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 Y+ + ++F+P R++ + +N L+ R L LLL+ D +Q VW Sbjct: 6 FYFSLGQGVKFYPASRRITTSTGNVIN--LSENGYRFLLLLLQGESD---KQHIINEVWR 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E+ V ++ Y I ++R+ G + SLI T+PR+G + ++ HV + D+ Sbjct: 61 EQKGSVSDSSYYGQIYMLRKALDVAG-LSSSLIKTIPRKGVRYLG--KVEKHVCENERDS 117 >UniRef50_A8AP73 Putative uncharacterized protein n=1 Tax=Citrobacter koseri ATCC BAA-895 RepID=A8AP73_CITK8 Length = 233 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 3/93 (3%) Query: 28 VVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGD 87 V L +PAS L L++ VV+Q T W E+ NT YQ I I+R +G Sbjct: 5 VTLQSPASLILLYLIQHNNTVVSQNQLITAGWGEKNHVTSANTFYQTILILRNALSDIG- 63 Query: 88 TTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 LI T+ RRG I NIQ I + A Sbjct: 64 LPRDLIKTIARRGMMI--SANIQTDEITAKASA 94 >UniRef50_D1RR55 Transcriptional regulator, CadC n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RR55_SEROD Length = 301 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 36 RCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIAT 95 + LSLL+ P++V++ + +W+ G +T+ Q I IR+ +GD H+LI T Sbjct: 30 QILSLLVARSPELVSRTEIIENIWK--GTYCSDSTINQTIKSIRQ---KIGDVEHTLIRT 84 Query: 96 VPRRGFKIHN 105 +PR G+K+ N Sbjct: 85 IPRLGYKVEN 94 >UniRef50_A6AKR5 Transcriptional regulatory protein, C n=3 Tax=Vibrio RepID=A6AKR5_VIBHA Length = 250 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 3/88 (3%) Query: 20 SVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIR 79 ++ N + + + S+ L+LLLE P+VV +QD W E + +L ++IS++R Sbjct: 10 TLSNGEKTIKIGYRESQILTLLLERSPEVVKKQDIVQFAWGNE--YIGETSLAKSISVLR 67 Query: 80 RGFRAVGDTTHSLIATVPRRGFKIHNDI 107 + F +G S I TVP+ G+++ D+ Sbjct: 68 QSFIKIG-IKDSPILTVPKVGYRLVEDV 94 >UniRef50_A8GFV8 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568 RepID=A8GFV8_SERP5 Length = 299 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 5/70 (7%) Query: 36 RCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIAT 95 + LSLL+ P++V++ + +W+ G +T+ Q I IR+ +GD H+LI T Sbjct: 30 QILSLLVARSPELVSRTEIIENIWK--GTYCSDSTINQTIKSIRQ---KIGDAEHTLIRT 84 Query: 96 VPRRGFKIHN 105 +PR G+K+ N Sbjct: 85 IPRLGYKVEN 94 >UniRef50_A8GL31 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568 RepID=A8GL31_SERP5 Length = 256 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 2/101 (1%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN I F + + + + V+LT R LSLL++ ++ ++ + W+ Sbjct: 1 MKFIINKRIIFHEDKSTIELLDDTIEPVMLTATLCRVLSLLVKNNDLLLTREFILSSAWD 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGF 101 E G + L IS+IR+ F + G++ +I TVPR+GF Sbjct: 61 EYGKSSTHSNLNNYISMIRKIFNSFGES--DIIITVPRQGF 99 >UniRef50_D0ZEM9 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEM9_EDWTE Length = 251 Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 6/107 (5%) Query: 5 INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLL--EAFPDVVAQQDFFTRVWEEE 62 +N+N+ + + +L + + D ++L A+R L LL+ + P V + F VW++ Sbjct: 13 LNENVLYNEQEAELKATVDGD-AILLAPSANRLLHLLILNQGIP--VTRDTLFKLVWDDH 69 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI 109 G+R L Q IS++RR VG I T+P+ GF I I I Sbjct: 70 GLRSSNANLNQYISLLRRQLFDVG-LPKDTIVTIPKIGFMIDKTIAI 115 >UniRef50_C4SAM2 Possible regulatory protein n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4SAM2_YERMO Length = 243 Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 18/177 (10%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M II NI F P R +++ V + S LSLL +P +++++ +W Sbjct: 25 MDEIIIGNIIFTPSKR---TINKGGAVVKIRNKESEVLSLLCHHYPSSLSREEIEREIWG 81 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E V NTL Q IS +R A+ D L+ T+P++G+ I + + NS D Sbjct: 82 ES--YVTDNTLTQTISNLR---HALDDKARELVTTIPKKGYCIGIKPDFTSS--NSLQDL 134 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177 + V + + +F+ KI++ I S ++G + ++ L +N+ Sbjct: 135 ILTQDDSMVSVKPKSTSLVSKSLSFHYKIIRLIVS--------IVGFFISFELTSNS 183 >UniRef50_D0YZ11 Transcriptional activator ToxR n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YZ11_LISDA Length = 299 Score = 47.0 bits (110), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 7/96 (7%) Query: 11 FWPEHRKLI-SVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69 F P LI +V N +L + L + SR LSLL++ ++ + VW E+G V + Sbjct: 16 FDPYDNSLIDTVENNEL-IRLGSNESRALSLLIDEPGAIITRNRLHDYVWREQGFEVDDS 74 Query: 70 TLYQNISIIRRGFRAVGDTTHS--LIATVPRRGFKI 103 +L Q IS +R+ + D T S + TVP+RG+++ Sbjct: 75 SLTQCISTLRKALK---DPTKSPEYVKTVPKRGYQM 107 >UniRef50_B1J1E8 Two component transcriptional regulator, LuxR family n=3 Tax=Pseudomonas putida RepID=B1J1E8_PSEPW Length = 330 Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 7/80 (8%) Query: 28 VVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGD 87 V L A L+ L++A VV + + F+ VW G V N L IS++R+ F A G Sbjct: 23 VPLGGRAFEVLATLIKAKGRVVGKDELFSEVWA--GTVVEDNNLQVQISLLRKAFGAPG- 79 Query: 88 TTHSLIATVPRRGFKIHNDI 107 LI TVPRRG+++ D+ Sbjct: 80 ----LIQTVPRRGYRLAVDV 95 >UniRef50_B5F706 Putative uncharacterized protein n=20 Tax=Salmonella enterica subsp. enterica RepID=B5F706_SALA4 Length = 149 Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust. Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 5/131 (3%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLE-AFPDVVAQQDFFTRVWEE 61 + IN+ + R++IS+H+ + + +T +RCLS L E A+ ++ ++ VW E Sbjct: 4 YTINNEFIYNESLREIISLHDKKV-LKVTLMRARCLSYLFENAYKKLITREMISHAVWGE 62 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI-NSSTDA 120 V L Q + ++RR + +G L T+PR+G KI I I + Sbjct: 63 RSQFVSDANLTQLLYLLRRDLQQIG--LFELFVTLPRQGIKIDERFIIDAADIPPQAIQH 120 Query: 121 HTHNAPPAIKV 131 HTH I + Sbjct: 121 HTHRCNKIISI 131 >UniRef50_C5ZZN9 Putative uncharacterized protein n=1 Tax=Escherichia coli Vir68 RepID=C5ZZN9_ECOLX Length = 216 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 30/218 (13%) Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 M V N LYQ+IS++R+ G T ++I T PRRGF + +I I + + D + Sbjct: 1 MEVGPNALYQSISMLRKALSTCG-TPDNIILTAPRRGFSLSQEICISCDNLQEAMDEQSS 59 Query: 124 N-APPAIKVNAGYKESIG----GAKNFNNKIL---------KHIKSHLIMLSAFVIGAYS 169 + + K+N + E++ GA ++++ K + I S F Y Sbjct: 60 DWLNGSDKMNETHGENLMKEMWGAIPSESEMMEISSEYVRDKQCRKRKIDSSIFY---YI 116 Query: 170 AYWLWNNNQPKP----FFKD---YKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGI 222 L + P F D Y E NGC+ + + D + +L +GI Sbjct: 117 LILLTILSLIVPVYLVFLSDGEHYSKRFEFNGCYVYSRDASND-----NNTMDIVLKTGI 171 Query: 223 NCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLT 260 C+ ++Y + ++ C K + + NC++ Sbjct: 172 KCEDRRYVYVTYFQGGDRESLIQCRKPLSTFSLPNCIS 209 >UniRef50_A3UR88 Putative transcriptional activator ToxR n=3 Tax=Vibrionales RepID=A3UR88_VIBSP Length = 280 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 3/83 (3%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 ++N + ++ + +R L LLL+ P++V +QD + W E + +L + IS++R+ Sbjct: 11 IYNDERSIKIGYRETRVLELLLKKSPEIVRKQDIISFAWGSEF--IGDTSLAKCISLLRQ 68 Query: 81 GFRAVGDTTHSLIATVPRRGFKI 103 GF +G + I TVP+ G+++ Sbjct: 69 GFVKLG-IKETPIVTVPKVGYRL 90 >UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022A1_SOLUE Length = 605 Score = 44.3 bits (103), Expect = 0.005, Method: Compositional matrix adjust. Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%) Query: 28 VVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGD 87 V L A L +L+E +VVA+QD + VW + V + L NISI+RR D Sbjct: 2 VALEPKAVEVLLILVEKRGEVVARQDLMSAVWPD--TFVEESNLSSNISILRRQLGTPPD 59 Query: 88 TTHSLIATVPRRGFKIHNDINIQNHVINSST 118 I T+P+RG++ +N + ++T Sbjct: 60 GG-DYIQTIPKRGYRFVAAVNQAGSELEAAT 89 >UniRef50_A9MR60 Putative uncharacterized protein n=11 Tax=Salmonella enterica RepID=A9MR60_SALAR Length = 149 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 7/133 (5%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLE-AFPDVVAQQDFFTRVWEE 61 + IN++ + R++IS+ + + + +T +RCLS L E A+ ++ ++ VW E Sbjct: 4 YTINNDFIYNESLREIISLRDKKV-LKVTLMRARCLSYLFENAYKKLITREMISHAVWGE 62 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI---NSST 118 V L Q + ++RR +G L T+PR+G KI I + I N + Sbjct: 63 RSQFVSDANLTQLLYLLRRDLEQIG--LFKLFITLPRQGIKIDERFIINSADIPPQNIQS 120 Query: 119 DAHTHNAPPAIKV 131 H +N +I + Sbjct: 121 RTHRYNKIISIGI 133 >UniRef50_B2VID6 Putative uncharacterized protein n=1 Tax=Erwinia tasmaniensis RepID=B2VID6_ERWT9 Length = 192 Score = 43.9 bits (102), Expect = 0.005, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 8/92 (8%) Query: 11 FWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNT 70 F P+ R L D+ V L + L+LL +P+ V+++DF VW G V T + Sbjct: 17 FNPKTRTL---QKNDIKVQLRKKQADVLNLLCTKYPEPVSREDFLAGVW--NGGYVTTQS 71 Query: 71 LYQNISIIRRGFRAVGDTTHSLIATVPRRGFK 102 + Q I +R + DT +I T+P+ G++ Sbjct: 72 IAQVIRSLRLD---LDDTNKKIIVTIPKLGYR 100 >UniRef50_B1HZ29 Sensory transduction protein n=3 Tax=Bacillaceae RepID=B1HZ29_LYSSC Length = 199 Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 5/73 (6%) Query: 29 VLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDT 88 +LT + LL EA+P+VVA+Q + +W++E V NTL NI +RR A+ Sbjct: 123 LLTLKEMQLSKLLFEAYPNVVARQKLLSAIWDDETF-VEENTLSVNIGRLRRKLEAI--- 178 Query: 89 THSLIATVPRRGF 101 HS + RG Sbjct: 179 -HSQLEIKTIRGL 190 >UniRef50_C2NAF5 Two-component response regulator n=2 Tax=Bacillus cereus RepID=C2NAF5_BACCE Length = 257 Score = 43.9 bits (102), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%) Query: 29 VLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDT 88 +LT + ++ EA+P+VV +Q T +W+EE V NTL NI+ +R+ A+ T Sbjct: 181 LLTIKEFQLCTMFFEAYPNVVTRQQLLTAIWDEEEF-VEENTLTVNIARLRKKLEAIHST 239 Query: 89 THSLIATVPRRGFKI 103 I T+ G+++ Sbjct: 240 LE--IRTIRGIGYQL 252 >UniRef50_Q15PB9 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15PB9_PSEA6 Length = 756 Score = 43.5 bits (101), Expect = 0.008, Method: Compositional matrix adjust. Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 6/154 (3%) Query: 29 VLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDT 88 L A L+ L + DVV+Q+D +VW++ V N+L + I+ +R+ F G Sbjct: 27 TLPPKALAVLTYLAKHQGDVVSQEDLLNQVWKD--TVVSPNSLQRCIAQLRKAFGDDGK- 83 Query: 89 THSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHN-APPAIKVNAGYKESIGGAKNFNN 147 LI T ++G+ + I ++H + D+ T + +PP G + + F+ Sbjct: 84 AQGLIKTHAKKGYSLEAAIRWEDHQKRNVGDSVTLDKSPPNQHAKLGTNKVVKAG--FSA 141 Query: 148 KILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 K + + +++ A VI S W + + P P Sbjct: 142 KHIFVLSLFTVLVFALVISITSTLWPSSVHNPSP 175 >UniRef50_B9TBN5 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TBN5_RICCO Length = 231 Score = 43.1 bits (100), Expect = 0.009, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 27 NVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVG 86 +V L+ A R L+LL +A +V ++ F + W G+ V N+L Q I +R F +G Sbjct: 96 SVALSPIAVRLLTLLADAPNTIVGRRQLFDQGWRRYGIEVCENSLNQVICALRTAFARLG 155 Query: 87 DTTHSLIATVPRRGFKI 103 S I TVPR G+ + Sbjct: 156 PEAPS-IRTVPRIGYSL 171 >UniRef50_B3INB4 Transcriptional regulatory protein, C n=2 Tax=Enterobacteriaceae RepID=B3INB4_ECOLX Length = 270 Score = 43.1 bits (100), Expect = 0.011, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query: 27 NVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVG 86 ++ L+ PA R L L+ ++ + D +VWE+ G+ + +L IS IR+ FR +G Sbjct: 27 SIKLSNPAGRLLYELIINNGKILDRDDLIKKVWEDHGLSGSSVSLNVAISEIRKAFRTLG 86 Query: 87 DTTHSLIATVPRRGFKI 103 LI T+ +GF + Sbjct: 87 -CAPLLIKTIRGKGFSL 102 >UniRef50_C9PH99 Putative uncharacterized protein n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PH99_VIBFU Length = 262 Score = 42.7 bits (99), Expect = 0.013, Method: Compositional matrix adjust. Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 11/117 (9%) Query: 17 KLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNIS 76 KL + ++ LT A+R L LL + + + W++ G++ ++L Q IS Sbjct: 19 KLSDAESDHESLTLTPTANRLLELLSKHHGTPMERDVLLMEGWDKFGLKGSYSSLNQYIS 78 Query: 77 IIRR---GFRAVGDTTHSLIATVPRRGFKIHNDINIQNH----VINSSTDAHTHNAP 126 +R+ F V D +I T+P+ GF ++N+ I+N + S + A H+AP Sbjct: 79 QLRKTLHKFTGVDD----IILTIPKVGFMLNNEFPIKNMDPEPIAVSESTAKAHHAP 131 >UniRef50_D1RYQ0 Transcriptional regulator, CadC n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RYQ0_SEROD Length = 258 Score = 42.4 bits (98), Expect = 0.015, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 42/243 (17%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN I F + + + + V+LT R LSLL++ ++ ++ + W+ Sbjct: 1 MKFIINKRIIFHEDKSSIELLDDTIEPVMLTATLCRVLSLLVKNNNLLLTREFLLSNGWD 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND-INIQNHVINSSTD 119 E G + L IS+IR+ F + G++ +I TVPR+GF D +N + SS Sbjct: 61 EYGKSSSHSNLNNYISMIRKIFNSFGES--EIIVTVPRQGFMFSADEVNTVDG--ESSLS 116 Query: 120 AHTHNAP-PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178 + + + P PA A K G + ++L+A I +AY ++ Q Sbjct: 117 SVSRDLPAPA----AAIKWKPAGLVS-------------LVLAAMAILMVAAYPFFDRYQ 159 Query: 179 PKPFFKDYKTVAEINGCHFNV---------TEDTIDGLKEFDKYKTRILDSGINCKKHPW 229 P + + +I+ C V T+D E +K K I + NCK Sbjct: 160 P----VKHSEIGKIDHCSVEVLTTSHYVKHTDD------ELEKIKPLIETARFNCKVPAT 209 Query: 230 LYF 232 +Y+ Sbjct: 210 IYY 212 >UniRef50_C4K826 Putative regulatory membrane protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K826_HAMD5 Length = 137 Score = 42.4 bits (98), Expect = 0.017, Method: Compositional matrix adjust. Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 8/91 (8%) Query: 11 FWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNT 70 F P+ R + + + S L LL + +P+ +++++ ++W + V NT Sbjct: 11 FIPKTR---VIKQEGREIKIRNKESELLFLLCKKYPNHISREEIEKQIWTQ--TYVTDNT 65 Query: 71 LYQNISIIRRGFRAVGDTTHSLIATVPRRGF 101 L Q IS +R G + D H +I T+P++G+ Sbjct: 66 LTQTISNLRNG---LNDKKHEIIITIPKKGY 93 >UniRef50_B6XAC7 Putative uncharacterized protein n=2 Tax=Providencia RepID=B6XAC7_9ENTR Length = 272 Score = 41.6 bits (96), Expect = 0.030, Method: Compositional matrix adjust. Identities = 60/254 (23%), Positives = 109/254 (42%), Gaps = 44/254 (17%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++IN+ I + H+ L+ N D + LTT +R L +L++ +V+ ++ +RVW+ Sbjct: 1 MKYLINNII--YDSHQGLLYRDNIDDAIKLTTTLNRLLLVLVQNNGEVLDRETLLSRVWD 58 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E N L +IS++RR + + +I T+P+ G K D +Q+ + Sbjct: 59 EHNQVASDNNLNSSISVLRRHLSSFFE--EEIITTIPKVGIKF--DAKLQSLSTKLNQKP 114 Query: 121 HTHNAP---------PAIKVNAGYKESIGGAKN---FNNKILKHIKSHLIMLSAFVIGAY 168 H P P+I N+ K+S+ + NN+ I L+ VI + Sbjct: 115 HQEEQPNILLKESEQPSIIENSPKKQSLSVKEKSYILNNR--------YIELTLVVIIIF 166 Query: 169 SAYWLWNNNQPKPFF----KDYKTVAEINGC------HFNVTEDTIDGLKEFDKYKTRIL 218 +L+ K +F +Y V I+ C ++ + T + TR+ Sbjct: 167 CLLYLF-----KSYFFATRTEYPEVGRIDQCSIRYINSYHKPDMTTINFTDLQNQLTRL- 220 Query: 219 DSGINCKKHPWLYF 232 I+CKK L++ Sbjct: 221 --NIDCKKPATLFY 232 >UniRef50_Q2S7R1 DNA-binding winged-HTH domains n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S7R1_HAHCH Length = 706 Score = 41.2 bits (95), Expect = 0.037, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%) Query: 37 CLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATV 96 L+LL+ VV ++FF +VW EG V N L ++I +R F D + IAT Sbjct: 62 VLALLIRHHDRVVTTEEFFDQVW--EGRFVGENVLKRSIFELRHIFE---DKSRDYIATA 116 Query: 97 PRRGFKIHNDINI------QNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKIL 150 P+RG+++ + + + + A AP + V+ +I A ++ L Sbjct: 117 PKRGYRLKAAVALVRPDPPEPETMTPPASAEAEQAPSDVTVSPAPVATIPTASWYSRLDL 176 Query: 151 KHI 153 K + Sbjct: 177 KRL 179 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q46942 Uncharacterized protein yqeI n=36 Tax=Enterobact... 336 5e-91 UniRef50_B7LP57 Putative regulatory protein n=2 Tax=Enterobacter... 277 4e-73 UniRef50_B4SXG5 Transcriptional regulatory protein, C n=31 Tax=S... 269 7e-71 UniRef50_A6T554 Putative sensory transducer n=1 Tax=Klebsiella p... 260 2e-68 UniRef50_UPI0001826357 putative regulatory protein n=1 Tax=Enter... 219 9e-56 UniRef50_UPI000182700F transcriptional regulatory protein, C n=1... 211 2e-53 UniRef50_UPI0001C33D1D hypothetical protein CATC2_20487 n=1 Tax=... 202 1e-50 UniRef50_C4SC03 Transcriptional regulatory protein n=2 Tax=Yersi... 194 3e-48 UniRef50_C1MAT2 Predicted protein n=2 Tax=Citrobacter RepID=C1MA... 193 6e-48 UniRef50_C6UPQ2 Predicted protein n=12 Tax=Escherichia coli O157... 190 3e-47 UniRef50_B2VGK3 Putative transcriptional regulator n=1 Tax=Erwin... 190 7e-47 UniRef50_C4UJG3 Transcriptional regulator n=1 Tax=Yersinia rucke... 186 9e-46 UniRef50_C4SUH9 Putative uncharacterized protein n=1 Tax=Yersini... 178 2e-43 UniRef50_C1MDX4 Putative uncharacterized protein n=1 Tax=Citroba... 175 1e-42 UniRef50_C4SF84 DNA-binding winged-HTH domains n=1 Tax=Yersinia ... 169 1e-40 UniRef50_C7BJK4 Putative membrane protein n=1 Tax=Photorhabdus a... 163 6e-39 UniRef50_A8GJD8 Transcriptional regulator, CadC n=1 Tax=Serratia... 161 2e-38 UniRef50_Q2NSQ9 Putative uncharacterized protein n=1 Tax=Sodalis... 158 2e-37 UniRef50_C4UHM9 Transcriptional regulatory protein, C n=1 Tax=Ye... 156 7e-37 UniRef50_C4SV61 Putative uncharacterized protein n=1 Tax=Yersini... 156 7e-37 UniRef50_C4SZK7 Putative uncharacterized protein n=1 Tax=Yersini... 154 2e-36 UniRef50_A8GBW4 Transcriptional regulator, CadC n=1 Tax=Serratia... 151 3e-35 UniRef50_C4T6D4 DNA-binding winged-HTH domains n=1 Tax=Yersinia ... 144 2e-33 UniRef50_B5FBZ3 Toxin transcriptional activator ToxR n=3 Tax=Vib... 141 3e-32 UniRef50_A8GL29 Transcriptional regulator, CadC n=2 Tax=Serratia... 139 7e-32 UniRef50_C4T4W9 DNA-binding winged-HTH domains n=1 Tax=Yersinia ... 132 1e-29 UniRef50_P15795 Cholera toxin transcriptional activator n=121 Ta... 130 5e-29 UniRef50_B2D6Y9 ToxR n=2 Tax=Vibrio cholerae RepID=B2D6Y9_VIBCH 129 1e-28 UniRef50_B2VCE9 Probable transcriptional regulator n=1 Tax=Erwin... 128 2e-28 UniRef50_D2TAS4 Cholera toxin transcriptional activator n=2 Tax=... 128 2e-28 UniRef50_C5ZZN9 Putative uncharacterized protein n=1 Tax=Escheri... 127 3e-28 UniRef50_Q7VR33 Transcriptional regulatory protein, C terminal d... 127 3e-28 UniRef50_B2VGZ0 Transcriptional regulatory protein n=1 Tax=Erwin... 127 3e-28 UniRef50_D2YQP0 Transmembrane regulatory protein ToxR n=7 Tax=Vi... 127 3e-28 UniRef50_D2TQU5 Putative transcriptional regulator n=2 Tax=Enter... 127 4e-28 UniRef50_Q1Z5R8 Transcription activator ToxR n=4 Tax=Photobacter... 126 1e-27 UniRef50_A8AP73 Putative uncharacterized protein n=1 Tax=Citroba... 124 4e-27 UniRef50_D0YIE0 Transcriptional regulator, CadC n=6 Tax=Klebsiel... 123 7e-27 UniRef50_Q8D287 YqeI protein n=1 Tax=Wigglesworthia glossinidia ... 121 3e-26 UniRef50_D0ZEM9 Putative uncharacterized protein n=1 Tax=Edwards... 121 3e-26 UniRef50_Q9RHQ9 Transmembrane regulatory protein ToxR n=2 Tax=Gr... 121 3e-26 UniRef50_A8GL31 Transcriptional regulator, CadC n=1 Tax=Serratia... 119 7e-26 UniRef50_B4EUN0 Putative membrane protein n=2 Tax=Proteus mirabi... 117 3e-25 UniRef50_UPI00018266EF transcriptional regulator, CadC n=1 Tax=E... 117 3e-25 UniRef50_D0YZ11 Transcriptional activator ToxR n=1 Tax=Photobact... 116 1e-24 UniRef50_C4SAM2 Possible regulatory protein n=1 Tax=Yersinia mol... 113 6e-24 UniRef50_D2A9T6 Transcriptional regulator, CadC n=3 Tax=Shigella... 112 1e-23 UniRef50_B2Q575 Putative uncharacterized protein n=1 Tax=Provide... 110 6e-23 UniRef50_A7MIL4 Putative uncharacterized protein n=2 Tax=Cronoba... 103 6e-21 UniRef50_A1JPG4 Possible reguatory protein n=5 Tax=Yersinia RepI... 101 2e-20 UniRef50_B5F706 Putative uncharacterized protein n=20 Tax=Salmon... 101 2e-20 UniRef50_B4TIC0 Putative uncharacterized protein n=33 Tax=Entero... 101 3e-20 UniRef50_A6AKR5 Transcriptional regulatory protein, C n=3 Tax=Vi... 99 1e-19 UniRef50_B1JQB0 Transcriptional regulator, CadC n=18 Tax=Yersini... 98 3e-19 UniRef50_D1P736 Putative transcriptional regulator with C-, effe... 94 4e-18 UniRef50_D2A7F9 Membrane protein n=2 Tax=Shigella flexneri RepID... 91 4e-17 UniRef50_C4UIA8 Possible regulatory protein n=1 Tax=Yersinia ruc... 86 1e-15 UniRef50_B1J1E8 Two component transcriptional regulator, LuxR fa... 85 3e-15 UniRef50_A8GFV8 Transcriptional regulator, CadC n=1 Tax=Serratia... 76 1e-12 UniRef50_D1RR55 Transcriptional regulator, CadC n=1 Tax=Serratia... 74 5e-12 Sequences not found previously or not previously below threshold: UniRef50_B3INB4 Transcriptional regulatory protein, C n=2 Tax=En... 135 1e-30 UniRef50_D1RYQ0 Transcriptional regulator, CadC n=1 Tax=Serratia... 119 9e-26 UniRef50_C9PH99 Putative uncharacterized protein n=1 Tax=Vibrio ... 117 3e-25 UniRef50_A0KHX7 Transcriptional regulatory protein, C terminal n... 107 5e-22 UniRef50_B6XAC7 Putative uncharacterized protein n=2 Tax=Provide... 105 1e-21 UniRef50_D2T558 Protein rcaC n=3 Tax=Erwinia RepID=D2T558_ERWPY 99 1e-19 UniRef50_C2LLY1 Regulatory protein n=9 Tax=Enterobacteriaceae Re... 98 3e-19 UniRef50_UPI000197C3BF transcriptional regulator, CadC n=1 Tax=P... 97 5e-19 UniRef50_B2VJM5 Probable transcriptional regulator n=1 Tax=Erwin... 97 6e-19 UniRef50_D0XI00 Putative uncharacterized protein n=1 Tax=Vibrio ... 94 6e-18 UniRef50_A6XSQ7 ToxR2 n=9 Tax=Vibrio RepID=A6XSQ7_VIBCH 94 6e-18 UniRef50_A9MR60 Putative uncharacterized protein n=11 Tax=Salmon... 92 2e-17 UniRef50_C9PHD6 Transcriptional activator ToxR n=1 Tax=Vibrio fu... 92 2e-17 UniRef50_A4XNQ3 Transcriptional regulator, CadC n=1 Tax=Pseudomo... 92 2e-17 UniRef50_A3USG7 Cholera toxin transcriptional activator n=1 Tax=... 91 3e-17 UniRef50_C9NME3 Putative transcriptional activator ToxR n=1 Tax=... 91 3e-17 UniRef50_C4U6Y3 Putative uncharacterized protein n=1 Tax=Yersini... 89 1e-16 UniRef50_A5L3N2 DNA-binding transcriptional activator n=2 Tax=Vi... 89 1e-16 UniRef50_D0I6A9 Putative transcriptional activator ToxR n=1 Tax=... 88 4e-16 UniRef50_D0XFV2 Putative uncharacterized protein n=1 Tax=Vibrio ... 86 1e-15 UniRef50_A3UR88 Putative transcriptional activator ToxR n=3 Tax=... 85 2e-15 UniRef50_Q15PB9 Lysine decarboxylase transcriptional regulator, ... 85 3e-15 UniRef50_C1M6R9 Predicted protein n=2 Tax=Citrobacter RepID=C1M6... 85 3e-15 UniRef50_C2HYC0 Transcriptional activator ToxR n=1 Tax=Vibrio ch... 85 3e-15 UniRef50_Q7BQU1 Sea17 n=1 Tax=Serratia entomophila RepID=Q7BQU1_... 84 3e-15 UniRef50_A1JQP0 Membrane protein n=15 Tax=Enterobacteriaceae Rep... 84 4e-15 UniRef50_Q1YZ13 Transcriptional activator CadC n=1 Tax=Photobact... 84 4e-15 UniRef50_Q5E5W5 Transcriptional regulatory protein n=2 Tax=Vibri... 84 5e-15 UniRef50_B9TBN5 Putative uncharacterized protein n=1 Tax=Ricinus... 84 5e-15 UniRef50_A4CYI6 Putative uncharacterized protein n=1 Tax=Synecho... 84 6e-15 UniRef50_Q2NVH3 Putative uncharacterized protein n=1 Tax=Sodalis... 82 2e-14 UniRef50_Q1ZVU4 Putative uncharacterized protein n=1 Tax=Photoba... 82 2e-14 UniRef50_C6D9U3 Transcriptional regulator, CadC n=5 Tax=Pectobac... 82 3e-14 UniRef50_Q2S7R1 DNA-binding winged-HTH domains n=1 Tax=Hahella c... 81 4e-14 UniRef50_B2VDV6 Putative transcriptional regulatory protein n=1 ... 80 7e-14 UniRef50_B5FHC5 Putative transcriptional regulator n=14 Tax=Salm... 80 9e-14 UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax... 79 1e-13 UniRef50_C9QE85 Putative uncharacterized protein n=1 Tax=Vibrio ... 79 1e-13 UniRef50_Q12IZ6 Transcriptional regulatory protein-like protein ... 79 1e-13 UniRef50_B8CR40 Transcriptional activator CadC n=1 Tax=Shewanell... 78 2e-13 UniRef50_A4EHZ3 Integral membrane protein-like n=1 Tax=Roseobact... 78 3e-13 UniRef50_D2T7N3 Probable regulatory protein embR n=3 Tax=Erwinia... 78 3e-13 UniRef50_C7BJM7 Putative uncharacterized protein n=1 Tax=Photorh... 78 3e-13 UniRef50_A6CY17 DNA-binding transcriptional activator n=2 Tax=Vi... 78 3e-13 UniRef50_Q1IKQ5 Lysine decarboxylase transcriptional regulator, ... 77 7e-13 UniRef50_A1S359 Putative transcriptional regulator, CadC n=1 Tax... 76 1e-12 UniRef50_C4K826 Putative regulatory membrane protein n=1 Tax=Can... 76 1e-12 UniRef50_Q12K29 Transcriptional regulatory protein-like protein ... 76 1e-12 UniRef50_D0X6S7 Putative uncharacterized protein n=1 Tax=Vibrio ... 76 2e-12 UniRef50_Q3JM80 Transcriptional regulatory component of sensory ... 75 2e-12 UniRef50_A5L7Z6 Putative uncharacterized protein n=1 Tax=Vibrion... 75 2e-12 UniRef50_A0KFN3 Transcriptional regulatory protein, C terminal n... 75 2e-12 UniRef50_Q1Z6E8 Transcriptional activator of cad operon n=1 Tax=... 75 3e-12 UniRef50_A6D0K2 Putative uncharacterized protein n=1 Tax=Vibrio ... 75 3e-12 UniRef50_B1KFP5 Transcriptional regulator, CadC n=1 Tax=Shewanel... 74 3e-12 UniRef50_Q1ZPU0 Putative uncharacterized protein n=7 Tax=Photoba... 74 3e-12 UniRef50_B2VID6 Putative uncharacterized protein n=1 Tax=Erwinia... 74 3e-12 UniRef50_Q12S47 Transcriptional regulatory protein-like protein ... 74 4e-12 UniRef50_B2JV11 Transcriptional regulator, winged helix family n... 74 4e-12 UniRef50_Q47YD8 Putative transcriptional regulator n=1 Tax=Colwe... 74 4e-12 UniRef50_D0FT15 Conserved uncharacterized protein n=1 Tax=Erwini... 74 4e-12 UniRef50_P23890 Transcriptional activator cadC n=99 Tax=Enteroba... 74 4e-12 UniRef50_B2JV05 Transcriptional regulator, winged helix family n... 73 7e-12 UniRef50_Q2C4S0 Putative uncharacterized protein n=1 Tax=Photoba... 73 9e-12 UniRef50_B4SI58 Transcriptional regulator domain protein n=3 Tax... 73 9e-12 UniRef50_C5EUU3 Two-component response regulator n=5 Tax=Bacteri... 73 9e-12 UniRef50_B1KK09 Transcriptional regulator, CadC n=1 Tax=Shewanel... 73 9e-12 UniRef50_Q2SHD7 Probable transcriptional regulator n=1 Tax=Hahel... 73 1e-11 UniRef50_A6U8S7 Transcriptional regulator, winged helix family n... 73 1e-11 UniRef50_A5VGJ6 Transcriptional regulator, CadC n=1 Tax=Sphingom... 73 1e-11 UniRef50_Q89V41 Bll1217 protein n=2 Tax=Bradyrhizobium japonicum... 73 1e-11 UniRef50_A8T8X6 Putative transcriptional regulator ToxR n=3 Tax=... 73 1e-11 UniRef50_B5R4U2 Possible transmembrane regulator n=37 Tax=Entero... 73 1e-11 UniRef50_B7VJ79 Transcriptional regulator n=6 Tax=Vibrionaceae R... 72 2e-11 UniRef50_A3CKZ7 Two-component response transcriptional regulator... 72 2e-11 UniRef50_Q1Z6V5 Putative uncharacterized protein n=1 Tax=Photoba... 72 2e-11 UniRef50_Q1MK68 Putative adenylate cyclase n=1 Tax=Rhizobium leg... 72 3e-11 UniRef50_B6EJP4 Putative uncharacterized protein n=1 Tax=Aliivib... 72 3e-11 UniRef50_B7VRN4 Putative uncharacterized protein n=2 Tax=Vibrio ... 71 3e-11 UniRef50_B3PJR7 Putative Transcriptional regulator CadC n=1 Tax=... 71 3e-11 UniRef50_A8AKG2 Putative uncharacterized protein n=2 Tax=Enterob... 71 3e-11 UniRef50_A3UTR1 Transcriptional regulator CadC n=1 Tax=Vibrio sp... 71 3e-11 UniRef50_Q988M4 Mll6677 protein n=1 Tax=Mesorhizobium loti RepID... 71 4e-11 UniRef50_D2M1X4 Two component transcriptional regulator, winged ... 71 4e-11 UniRef50_A4YSP3 Putative uncharacterized protein n=1 Tax=Bradyrh... 71 4e-11 UniRef50_Q1IIR6 Transcriptional regulatory protein-like n=1 Tax=... 71 5e-11 UniRef50_UPI00016A9165 transcriptional regulator, putative n=2 T... 71 5e-11 UniRef50_Q2C5Y8 Putative uncharacterized protein n=2 Tax=Photoba... 71 5e-11 UniRef50_C3NSU2 Transcriptional activator of cad operon n=39 Tax... 71 5e-11 UniRef50_Q7MF28 Putative uncharacterized protein VVA0492 n=1 Tax... 71 5e-11 UniRef50_A5P8P2 Transcription activator ToxR n=1 Tax=Erythrobact... 71 5e-11 UniRef50_A5KUS7 DNA-binding transcriptional activator n=1 Tax=Vi... 71 5e-11 UniRef50_A6F962 Putative uncharacterized protein n=1 Tax=Moritel... 71 5e-11 UniRef50_Q21GQ2 Transcriptional regulatory protein-like protein ... 71 5e-11 UniRef50_A7MRS6 Putative uncharacterized protein n=1 Tax=Vibrio ... 70 6e-11 UniRef50_C0Q6W1 Possible transmembrane regulator n=32 Tax=Entero... 70 8e-11 UniRef50_A8SVV6 Putative uncharacterized protein n=1 Tax=Coproco... 70 9e-11 UniRef50_A4FNN5 Response regulator, two-component system n=12 Ta... 70 9e-11 UniRef50_Q1IIZ5 Transcriptional regulatory protein-like n=1 Tax=... 70 1e-10 UniRef50_A4SQG5 Transcriptional activator CadC n=2 Tax=Aeromonas... 70 1e-10 UniRef50_Q1IHU2 Lysine decarboxylase transcriptional regulator, ... 70 1e-10 UniRef50_C5B7S6 Transcriptional activator CadC n=2 Tax=Enterobac... 69 1e-10 UniRef50_C9QI52 Cholera toxin transcriptional activator n=1 Tax=... 69 1e-10 UniRef50_C7E4R8 Transcriptional regulator n=1 Tax=Pantoea stewar... 69 1e-10 UniRef50_Q1MMK4 Putative transcriptional regulator n=1 Tax=Rhizo... 69 1e-10 UniRef50_Q2C702 Putative uncharacterized protein n=1 Tax=Photoba... 69 1e-10 UniRef50_B8CUZ5 Transcriptional regulatory protein n=1 Tax=Shewa... 69 1e-10 UniRef50_A3JJ41 Two component Transcriptional regulator, Winged ... 69 1e-10 UniRef50_D0YXS7 Putative uncharacterized protein n=1 Tax=Photoba... 69 1e-10 UniRef50_Q1ZPR1 Transcriptional activator CadC n=1 Tax=Photobact... 69 2e-10 UniRef50_C7RA75 Transcriptional regulator, CadC n=1 Tax=Kangiell... 69 2e-10 UniRef50_C9PL80 Putative uncharacterized protein n=1 Tax=Vibrio ... 69 2e-10 UniRef50_B1KKU4 Transcriptional regulator, CadC n=1 Tax=Shewanel... 69 2e-10 UniRef50_C9NXT9 Cholera toxin transcriptional activator n=2 Tax=... 69 2e-10 UniRef50_A5L317 Putative uncharacterized protein n=1 Tax=Vibrion... 68 3e-10 UniRef50_C9B1W4 DNA binding response regulator n=4 Tax=Enterococ... 68 3e-10 UniRef50_B1KAJ7 Transcriptional regulator, winged helix family n... 68 3e-10 UniRef50_A3QBG0 Transcriptional regulator, CadC n=1 Tax=Shewanel... 68 3e-10 UniRef50_A6ENM5 Two-component system response regulator n=1 Tax=... 68 3e-10 UniRef50_A6UHF5 Transcriptional regulator domain protein n=13 Ta... 68 3e-10 UniRef50_C9Y6H6 Putative uncharacterized protein n=1 Tax=Curviba... 68 3e-10 UniRef50_D1TLX7 Transcriptional regulator, winged helix family n... 68 3e-10 UniRef50_B6EKJ8 Putative transcriptional regulator n=1 Tax=Aliiv... 68 3e-10 UniRef50_Q2BXY4 Putative uncharacterized protein n=2 Tax=Photoba... 68 4e-10 UniRef50_D2T5X7 Uncharacterized protein yqeI n=2 Tax=Erwinia pyr... 68 4e-10 UniRef50_Q142F7 Lysine decarboxylase transcriptional regulator, ... 68 4e-10 UniRef50_Q6GZK0 Cad operon transcriptional activator (Fragment) ... 68 4e-10 UniRef50_A3W8K2 Putative uncharacterized protein n=1 Tax=Roseova... 68 4e-10 UniRef50_A1SYN7 Cholera toxin transcriptional activator-like pro... 68 5e-10 UniRef50_A5ED47 Transcriptional regulator n=1 Tax=Bradyrhizobium... 67 6e-10 UniRef50_Q182M4 Two-component response regulator n=14 Tax=Clostr... 67 7e-10 UniRef50_A7B4Z9 Putative uncharacterized protein n=2 Tax=Ruminoc... 67 7e-10 UniRef50_Q2T8V0 Transcriptional regulator, putative n=9 Tax=pseu... 67 7e-10 UniRef50_Q39G50 Transcriptional regulator, winged helix family n... 67 8e-10 UniRef50_Q987X1 Transcriptional regulator n=1 Tax=Mesorhizobium ... 67 8e-10 UniRef50_A6CVT0 Putative uncharacterized protein n=1 Tax=Vibrio ... 67 8e-10 UniRef50_B2T985 Transcriptional regulator, winged helix family n... 67 9e-10 UniRef50_A4CDM5 Putative transcriptional regulator n=1 Tax=Pseud... 66 9e-10 UniRef50_Q67JF4 Two-component response regulator n=1 Tax=Symbiob... 66 9e-10 UniRef50_B8CQV8 Transcriptional regulatory protein n=1 Tax=Shewa... 66 9e-10 UniRef50_B6FSP5 Putative uncharacterized protein n=1 Tax=Clostri... 66 1e-09 UniRef50_C6LC42 DNA-binding response regulator RegX3 n=3 Tax=Clo... 66 1e-09 UniRef50_B1KWY3 DNA-binding response regulator n=33 Tax=Firmicut... 66 1e-09 UniRef50_Q3KEV5 Putative transcriptional regulator n=2 Tax=Pseud... 66 1e-09 UniRef50_UPI0001B9ECAC two component transcriptional regulator, ... 66 1e-09 UniRef50_B8CQQ2 Transcriptional regulatory protein n=1 Tax=Shewa... 66 1e-09 UniRef50_C9XSJ2 Two-component response regulator n=15 Tax=Clostr... 66 1e-09 UniRef50_A4X1M5 Two component transcriptional regulator, winged ... 66 1e-09 UniRef50_C8W7R9 Two component transcriptional regulator, winged ... 66 1e-09 UniRef50_B5WFU1 Transcriptional regulator, winged helix family n... 66 2e-09 UniRef50_A5N5X6 Transcriptional regulator n=5 Tax=Clostridium Re... 66 2e-09 UniRef50_C5EI97 Response regulator receiver protein n=8 Tax=Bact... 66 2e-09 UniRef50_B1Y588 Transcriptional regulator domain protein n=1 Tax... 66 2e-09 UniRef50_A6FDL9 Putative uncharacterized protein n=1 Tax=Moritel... 66 2e-09 UniRef50_B2Q5H8 Putative uncharacterized protein n=1 Tax=Provide... 66 2e-09 UniRef50_A0KMK1 Transcriptional regulatory protein, C terminal n... 66 2e-09 UniRef50_A6TN88 Two component transcriptional regulator, winged ... 66 2e-09 UniRef50_Q5E341 DNA-binding transcriptional activator CadC n=9 T... 65 2e-09 UniRef50_C0CI50 Putative uncharacterized protein n=1 Tax=Blautia... 65 2e-09 UniRef50_C6XRJ0 Transcriptional regulator, CadC n=1 Tax=Hirschia... 65 2e-09 UniRef50_A4C7M7 TolB domain protein n=1 Tax=Pseudoalteromonas tu... 65 2e-09 UniRef50_Q5LZ35 Response regulator (Homolog to RR01Spn & Sth) n=... 65 2e-09 UniRef50_C9A7F3 DNA binding response regulator n=4 Tax=Enterococ... 65 2e-09 UniRef50_B8KCT7 Transcriptional regulatory C terminal domain pro... 65 2e-09 UniRef50_Q0ANH0 Lysine decarboxylase transcriptional regulator, ... 65 2e-09 UniRef50_Q03AM3 DNA-binding response regulator, OmpR family (Rec... 65 3e-09 UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC... 65 3e-09 UniRef50_A4CDV0 Putative transcriptional regulator n=1 Tax=Pseud... 65 3e-09 UniRef50_C9QI56 Cholera toxin transcriptional activator n=2 Tax=... 65 3e-09 UniRef50_Q9RFS1 Transmembrane regulatory protein ToxR (Fragment)... 65 3e-09 UniRef50_A2PNS6 Putative transcriptional regulator ToxR n=1 Tax=... 64 3e-09 UniRef50_Q01QR8 Transcriptional regulator, CadC n=1 Tax=Candidat... 64 4e-09 UniRef50_C4Z6V6 Two-component system, OmpR family, response regu... 64 4e-09 UniRef50_Q1YYT7 Putative uncharacterized protein n=3 Tax=Photoba... 64 5e-09 UniRef50_B1T3M3 Transcriptional regulator, winged helix family n... 64 5e-09 UniRef50_C5AMC0 Transcriptional regulator, winged helix family p... 64 5e-09 UniRef50_C6AVM9 Response regulator receiver protein n=1 Tax=Rhiz... 64 5e-09 UniRef50_B2SNG2 Transcriptional regulatory protein, C terminal n... 64 5e-09 UniRef50_A6Q830 Two-component response regulator n=5 Tax=Epsilon... 64 6e-09 UniRef50_A3WEA4 Adenylate cyclase n=1 Tax=Erythrobacter sp. NAP1... 64 6e-09 UniRef50_A4C973 Putative transcriptional regulator n=1 Tax=Pseud... 64 6e-09 UniRef50_A8H9X2 Transcriptional regulator, CadC n=2 Tax=Shewanel... 64 7e-09 UniRef50_A1TS46 Transcriptional regulator domain protein n=2 Tax... 64 7e-09 UniRef50_C8WHB5 Two component transcriptional regulator, winged ... 63 7e-09 UniRef50_C4U9W3 Transcriptional regulator n=1 Tax=Yersinia aldov... 63 8e-09 UniRef50_B1LHR8 Lateral flagellar transmembrane regulator LafZ n... 63 8e-09 UniRef50_A8UMD4 Two-component system response regulator n=2 Tax=... 63 8e-09 UniRef50_C6IXU0 Transcriptional regulator domain-containing prot... 63 8e-09 UniRef50_C7R8I4 Transcriptional regulator, CadC n=1 Tax=Kangiell... 63 9e-09 UniRef50_UPI00016A77BF transcriptional regulator, putative n=1 T... 63 9e-09 >UniRef50_Q46942 Uncharacterized protein yqeI n=36 Tax=Enterobacteriaceae RepID=YQEI_ECOLI Length = 269 Score = 336 bits (861), Expect = 5e-91, Method: Composition-based stats. Identities = 269/269 (100%), Positives = 269/269 (100%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE Sbjct: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA Sbjct: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK Sbjct: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG Sbjct: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 Query: 241 MIVMACNKNYNQHEVANCLTLSYREVNRD 269 MIVMACNKNYNQHEVANCLTLSYREVNRD Sbjct: 241 MIVMACNKNYNQHEVANCLTLSYREVNRD 269 >UniRef50_B7LP57 Putative regulatory protein n=2 Tax=Enterobacteriaceae RepID=B7LP57_ESCF3 Length = 307 Score = 277 bits (707), Expect = 4e-73, Method: Composition-based stats. Identities = 128/268 (47%), Positives = 176/268 (65%), Gaps = 7/268 (2%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 MYWIIN+ IEF P +KLIS N +LNVVLT+PASRCL LLLEA PDVV+QQ+ F +VWE Sbjct: 40 MYWIINEFIEFRPASKKLISRRNPELNVVLTSPASRCLLLLLEASPDVVSQQELFKKVWE 99 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 +EGM VPTNTLYQNISI+RRG +AVG+T +LIAT+PR+GFKI + I + ++D Sbjct: 100 DEGMYVPTNTLYQNISIVRRGLKAVGETEQTLIATIPRKGFKIEQGVKI----VRMASDE 155 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNN---KILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177 + +E + ++ + IML AF++GA ++ W++ Sbjct: 156 LFPEEEQEEEQTGNAEELLLPVNEHQQPRISLMSRLSLVFIMLLAFIVGATGMHFYWHSG 215 Query: 178 QPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKS 237 + PFF DYK + + NGCHF V +D+ DG F + KT I +G++CKK+PW+Y PL+K+ Sbjct: 216 ETTPFFADYKLLEQENGCHFYVKDDSHDGDNNFARIKTLITRTGLDCKKYPWVYLPLSKT 275 Query: 238 SPGMIVMACNKNYNQHEVANCLTLSYRE 265 PG+ V+ C K+Y H V C+TLS+RE Sbjct: 276 DPGLAVLVCKKDYLVHSVPGCMTLSFRE 303 >UniRef50_B4SXG5 Transcriptional regulatory protein, C n=31 Tax=Salmonella enterica RepID=B4SXG5_SALNS Length = 254 Score = 269 bits (687), Expect = 7e-71, Method: Composition-based stats. Identities = 109/268 (40%), Positives = 143/268 (53%), Gaps = 15/268 (5%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M WIINDNIEF PE +L S+ DLN++LTTPASRCL LLLE P VV+QQ FF +VWE Sbjct: 1 MLWIINDNIEFNPEMNRLASLSRPDLNIILTTPASRCLRLLLENAPSVVSQQTFFQKVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E+GM V NTLYQNISIIRRG R VG+ +LI TVPRRGF+I ++I + + Sbjct: 61 EDGMVVSANTLYQNISIIRRGLRTVGENEDTLIITVPRRGFQIEPGVSIMTIRKDFAQAI 120 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 P + + KH L M F +G W K Sbjct: 121 EKKGETP---------------PRMSGRWFKHYVPVLWMTGTFAVGILLGTISWQTVPDK 165 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 F+ Y V GCHF + I+ F YK+ IL +G++C+K+PW+YFP + +P Sbjct: 166 DFYDRYTLVETTQGCHFFSRNEDIESGSRFASYKSMILKTGMDCQKYPWVYFPSSSRTPA 225 Query: 241 MIVMACNKNYNQHEVANCLTLSYREVNR 268 + + C + Y C+TL +R V Sbjct: 226 VTALICQQPYKTRGDTGCVTLFFRGVTH 253 >UniRef50_A6T554 Putative sensory transducer n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae MGH 78578 RepID=A6T554_KLEP7 Length = 274 Score = 260 bits (665), Expect = 2e-68, Method: Composition-based stats. Identities = 120/281 (42%), Positives = 173/281 (61%), Gaps = 25/281 (8%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 MYWIIN NIEFWPE+++LIS+ N +V LT PAS CL LLLEA P++V+QQ FF +VWE Sbjct: 1 MYWIINKNIEFWPENKRLISLKNPAQSVTLTAPASHCLVLLLEATPELVSQQVFFKKVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ---------- 110 +EG+ VP NTLYQNISI+RRG R VG+T +S++ TVPR+GF I+ ++N++ Sbjct: 61 DEGILVPANTLYQNISIVRRGLRDVGETDNSIVVTVPRKGFHINPNVNVERMDKKPLNSE 120 Query: 111 --NHVINSSTDAHTHNAP---PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVI 165 N + S D P P V +++IG + LIML + + Sbjct: 121 SYNDITIISQDDVAEKNPTTEPGDIVQTATRKNIGAKAT----------TFLIMLLSLLA 170 Query: 166 GAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCK 225 G S +++W+ + KPFF Y V GCHF +D + +F+ YK+ I SG++CK Sbjct: 171 GCLSFHYIWHFHDEKPFFSSYTLVENDRGCHFYTKDDNHAKVDKFNYYKSLIFKSGLDCK 230 Query: 226 KHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSYREV 266 K+P++YF +++ SPG IV C K+Y++ A C+TLS+R + Sbjct: 231 KYPFVYFSMSQMSPGFIVFICRKSYSEKVSAGCVTLSFRGI 271 >UniRef50_UPI0001826357 putative regulatory protein n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001826357 Length = 265 Score = 219 bits (557), Expect = 9e-56, Method: Composition-based stats. Identities = 74/267 (27%), Positives = 123/267 (46%), Gaps = 16/267 (5%) Query: 3 WIINDNIEFWPEHRKLISVHN-ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++IND++ F P+ R+L D V+L P S CL LLLE +V+ Q+ F+ VWE+ Sbjct: 5 FLINDSVLFEPDKRRLCPRDGYPDRAVLLHGPVSECLLLLLEHNGEVLTQRYLFSAVWEK 64 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---IQNHVINSST 118 +G V TN LYQ I+ IR+ ++VG +++ TVP+ GFK + ++ ++ +T Sbjct: 65 QGAIVTTNALYQTIASIRKALKSVG-LAENIVQTVPKEGFKAVAALQSGTLEEFILPVAT 123 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178 P K F++KI I + L ++S FV L + Sbjct: 124 AP-KDGQPEEEKAYLPAPVVRPRKSLFSSKIAYGIAALLFLVSCFV----LYQQLKPGDA 178 Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSS 238 P F DY + + GC + D ++ +K+ + + + C +Y L Sbjct: 179 P---FADYHFIGNVEGCDVYSS--LHDKMQSQNKFTSLVKRYPVQCSAGGRVYITLNHYQ 233 Query: 239 PGMIVMACNKNYNQHEVANCLTLSYRE 265 G V+ C+K + A C ++ YRE Sbjct: 234 QGTSVIVCDKQADLAG-AQCESILYRE 259 >UniRef50_UPI000182700F transcriptional regulatory protein, C n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI000182700F Length = 269 Score = 211 bits (537), Expect = 2e-53, Method: Composition-based stats. Identities = 76/273 (27%), Positives = 118/273 (43%), Gaps = 18/273 (6%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++IIN+ +EF P L ++N D VVL +PA RCL LL+E +V QQDF VW+ Sbjct: 4 HYIINNIVEFHPAASTLRDINNPDRVVVLNSPAGRCLLLLIERAGSIVTQQDFLDIVWQR 63 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 GM V NT YQNISI+R+G + +G I T+PR G + +D I VI Sbjct: 64 RGMLVSPNTYYQNISILRKGLKKIGFDV-DPIVTIPRIGLTLASDTQI---VIKEPATPA 119 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLW------- 174 A P V + + N + + + + + ++ G + Sbjct: 120 PEMAVPETAVQQDTADLRLNEEPGENALPE--RDSRLARARWLAGMLMILLVLLMSVGII 177 Query: 175 --NNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYF 232 +N + F +DY I CH + + I E K + C +PW+Y Sbjct: 178 GHSNARENRFIEDYHFATTIGACHVWLAKG-IQTQSERAKALAYVDQFKAECADYPWIYI 236 Query: 233 PLAKSSPGMIVMACNKNYNQHEVANCLTLSYRE 265 + P V+ C+K+ E C++ + E Sbjct: 237 SWYELLPRASVIRCDKSMK--EPNRCISDYFIE 267 >UniRef50_UPI0001C33D1D hypothetical protein CATC2_20487 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI0001C33D1D Length = 257 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 58/266 (21%), Positives = 103/266 (38%), Gaps = 20/266 (7%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++IN +EF P+++ L++ + L PAS C L+ D+V+Q T W E Sbjct: 2 YLINQLVEFNPDNKSLVNRQTG-RTIQLQLPASLCFLYLITHASDIVSQNTLMTVGWGER 60 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 NT YQ I +R VG + T+ RRG +++ + ++ + TD + Sbjct: 61 NNVTTANTFYQAILTLRNALADVG-LPRDTVKTISRRGLRLNENTQVE-----AITDLQS 114 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL-WNNNQP-K 180 +P ++ + I A + I I+ S ++ A WL W +P Sbjct: 115 DVSPLSVIEERAPAKIIPTAPQQPTQ----IAWWNILFSVGIVIATLVIWLVWYQTRPVM 170 Query: 181 PFFKDYKTVAEI---NGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKS 237 PF K +I C + + D F+ + C+ + ++ Sbjct: 171 PFSKFVSVSMQIPSRQNCKIYYSPNEYDQQGYFNLMQLH----PFLCENNKHVFLTGYLK 226 Query: 238 SPGMIVMACNKNYNQHEVANCLTLSY 263 + M+ C+K+ A C T Y Sbjct: 227 AERMVAFVCDKDARTDAHAFCTTHYY 252 >UniRef50_C4SC03 Transcriptional regulatory protein n=2 Tax=Yersinia RepID=C4SC03_YERMO Length = 281 Score = 194 bits (492), Expect = 3e-48, Method: Composition-based stats. Identities = 64/272 (23%), Positives = 115/272 (42%), Gaps = 15/272 (5%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 +IIN + F + +L + + L P SRCL LLL+ V++Q +F VWE Sbjct: 7 KFIINGKVCFLSDEHRLEPLGEQGSAISLNVPVSRCLLLLLQRKGSVISQSEFVYEVWES 66 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 +G NT +QNI ++R+ + G S+I TVP+ G + + N + ST Sbjct: 67 KGQFANANTYFQNIHLLRKALKTSG-IEESIIKTVPKEGIRFTGTVTYLNESNSESTAEL 125 Query: 122 THNAPPAIKVNAGYKE----------SIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171 T N I A + A F+++ + +IK ++ + Sbjct: 126 TENETRNIANEASADKQAPDVIDVKMQPPFAPFFSSQKMLYIKIFFVLGLLSIFILLLLN 185 Query: 172 WLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLY 231 + + N+ FF +Y+ + E+N C + +I L +Y + + +C+ Y Sbjct: 186 FHKDTNKNTDFFSNYQLIGEVNQCKVYASNTSI--LWPRSEYLDFVKNKNTSCQPGQVAY 243 Query: 232 FPLAKSSPGMIVMACNKNYNQHEVANCLTLSY 263 + ++ C+K+ + A+CLT Y Sbjct: 244 IAMNIFRTRALIHICDKSVSN--TASCLTKLY 273 >UniRef50_C1MAT2 Predicted protein n=2 Tax=Citrobacter RepID=C1MAT2_9ENTR Length = 261 Score = 193 bits (490), Expect = 6e-48, Method: Composition-based stats. Identities = 54/262 (20%), Positives = 112/262 (42%), Gaps = 15/262 (5%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++I + I F P + L V + + + L AS CL LL++ VV+Q + W + Sbjct: 9 YLIENRIIFTPATQCLARVDHPNQRIKLKHSASLCLLLLIQHRGQVVSQNELLEFGWGKN 68 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 +V N YQ+I +R+ + + LI T+PR+G I + +IQ + + + ++ Sbjct: 69 HRQVSFNAFYQSILSLRKSLLQL-ELEQPLITTIPRKGLIIQEEFDIQ---VIETPEENS 124 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 +A ++ +A +E + A ++ ++ ++ L+ + W +++ + Sbjct: 125 ASAEESLAPDATIEEFL--ADTPRQPLITAAETVMLALTLIICVLILYPWQASDD----Y 178 Query: 183 FKDYKTVAEI-NGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGM 241 F Y T + GC + D F ++ I + C+ H ++Y S + Sbjct: 179 FSGYITADKAPTGCQYYFNNDA----SNFTRHTAFIDKNPGLCQSHKFIYITTYPESKKL 234 Query: 242 IVMACNKNYNQHEVANCLTLSY 263 V+ C + C ++ Y Sbjct: 235 SVLVCRSPIKARQENACQSVYY 256 >UniRef50_C6UPQ2 Predicted protein n=12 Tax=Escherichia coli O157:H7 RepID=C6UPQ2_ECO5T Length = 270 Score = 190 bits (483), Expect = 3e-47, Method: Composition-based stats. Identities = 88/276 (31%), Positives = 129/276 (46%), Gaps = 20/276 (7%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIND + F KL S+ ++ V+LT PA +CL LLL+ VV+ FF +VW Sbjct: 1 MIYIINDEVRFNSSSNKLTSLLTSEE-VILTYPAGKCLKLLLDNAYSVVSHNQFFEKVWS 59 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTT--HSLIATVPRRGFKIHNDINIQNHVINSST 118 + V TNTLYQNIS+IRR FR + T + +I TVPR+GFKI+ +I+I N Sbjct: 60 DSSADVATNTLYQNISMIRRSFREISSATIFNDVIRTVPRKGFKINEEISITVLDNN--- 116 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFV---IGAYSAYWLWN 175 H N + N + E+I KN K + K+ L+++ F I S+Y+ Sbjct: 117 --HNENESVESEENGTHTENIN--KNHIAKGIFTTKNTLLIVCFFAAWGIVYISSYFFDM 172 Query: 176 NNQPKPF-------FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHP 228 Q K F +Y GC + + + ++ INCK HP Sbjct: 173 AFQSKSHTIKKIDAFSNYAQHPTQEGCSYFYDNKYFNSVDMLSPIIEKLQKMEINCKIHP 232 Query: 229 WLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSYR 264 ++Y S G C++ N NC +L Y+ Sbjct: 233 YIYIATNDSMSGFYAFTCSQMLNSESPNNCNSLYYK 268 >UniRef50_B2VGK3 Putative transcriptional regulator n=1 Tax=Erwinia tasmaniensis RepID=B2VGK3_ERWT9 Length = 301 Score = 190 bits (481), Expect = 7e-47, Method: Composition-based stats. Identities = 69/300 (23%), Positives = 117/300 (39%), Gaps = 47/300 (15%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 +N+ + F P+ +++ N V++ AS CL LL+E +V Q F+ VW G Sbjct: 15 TLNNFLIFEPDKKRITGRGNP---AVISASASLCLELLIENVGLLVTHQQFYDYVWRRFG 71 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 + TLYQNIS +RR G +I T+PR+GF + ++Q ++S T T Sbjct: 72 TEPASTTLYQNISALRRALNKAG-LQEDIIRTMPRKGFLLSPQTSVQRESLSSFTPVSTE 130 Query: 124 NA------------------PPAIKVNAGYKESIGGAKNFNNK----------ILKHIKS 155 ++ +ES G KNF LK K+ Sbjct: 131 PERANTLSAGGNEMPDPSPTDERMRTAQNKQESDSGNKNFLYSALTECHFFPAFLKSKKT 190 Query: 156 HLIMLSAFVIGAYSAYWL-----WNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEF 210 + F+ +S+++ N+ + +YK GC + + DG Sbjct: 191 MAVTFMLFLALLFSSFFYIRAGLNYNDAVFVYSTNYK------GC---IIFNNADGWLGK 241 Query: 211 DKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSY-REVNRD 269 D+ K + + I C ++Y K + + C + H NC + Y + +N D Sbjct: 242 DEVKKLVDEMKIKCSTTSYVYLTAFKHADSLSYFDCEHPLSGHVRTNCRSHYYVKNLNND 301 >UniRef50_C4UJG3 Transcriptional regulator n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UJG3_YERRU Length = 262 Score = 186 bits (471), Expect = 9e-46, Method: Composition-based stats. Identities = 55/264 (20%), Positives = 109/264 (41%), Gaps = 20/264 (7%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + IN+++ F+PE + S + + + P S+ + + V+Q + +T W E Sbjct: 5 YNINNSVLFYPESGDIASSLTGN-TIKINMPTSQLFEVFITRMGVAVSQNELYTAAWGEN 63 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 + V NTLYQNIS++R+ + G + SL T+ +GF I ++ H + D Sbjct: 64 SVNVTPNTLYQNISLLRKALQDSGIPSESL-KTLRGKGF-IFTVASVVEHCVEDIQDVKD 121 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP--- 179 P Y + K I + ++L++ +I + N P Sbjct: 122 SEITPEKSEPTHYGK-------------KTIAYYSMLLTSLIIVFLGVLFYDYKNIPWRV 168 Query: 180 KPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239 + KD+ +++INGC + K + C+ +P++Y ++ Sbjct: 169 NNYPKDFVFISKINGCSIF-NSTEGKSIVNNQKINRLVKTLPAECESYPYVYISYSERHA 227 Query: 240 GMIVMACNKNYNQHEVANCLTLSY 263 + +++C + N E +C T + Sbjct: 228 TVSIISCRYDMNYTEQNDCKTEIF 251 >UniRef50_C4SUH9 Putative uncharacterized protein n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SUH9_YERFR Length = 267 Score = 178 bits (450), Expect = 2e-43, Method: Composition-based stats. Identities = 57/264 (21%), Positives = 115/264 (43%), Gaps = 15/264 (5%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + INDNI F+PE L S + + P ++ L + +++Q D ++ W + Sbjct: 5 YTINDNITFYPESGILSS-SLGGARIKINVPTAQLLEAFVNRVGLIISQSDLYSIAWGDN 63 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 G+ V NTLYQNIS++R+ + +G + + I TV +GF + + D Sbjct: 64 GVNVTPNTLYQNISLLRKALQDIGLSGEA-ITTVRGKGFIFTVTKVTECEI---DIDPED 119 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP- 181 V E + + I + +++ ++ +I + ++ + + PK Sbjct: 120 DEIIIENIVPQQQDEKLVTKNKYK------IYNIVLLFASVLIFFGAVFYFIHKSIPKRI 173 Query: 182 --FFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239 + K++ +++I+GC T + L+ +K T + + C +P++Y P Sbjct: 174 IDYPKNFTFLSKIDGCSIF-TSTELHNLESQEKVNTFLSGQSLECNNYPYIYLNYTIRHP 232 Query: 240 GMIVMACNKNYNQHEVANCLTLSY 263 + V++C N + NC T + Sbjct: 233 TISVISCEFEVNYSKKNNCRTEIF 256 >UniRef50_C1MDX4 Putative uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MDX4_9ENTR Length = 251 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 54/260 (20%), Positives = 97/260 (37%), Gaps = 20/260 (7%) Query: 9 IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68 +EF P+ + L++ + L PAS C L+ D+V+Q T W E T Sbjct: 2 VEFNPDSKSLVNRQTG-RAIQLQLPASLCFLYLITHASDIVSQNTLMTIGWGERNNVTTT 60 Query: 69 NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPA 128 NT YQ I +R VG + T+ RRG +++ + ++ + + +PP Sbjct: 61 NTFYQAILTLRNALADVG-LPRDTVKTISRRGLRLNENTQVETITLQQ-----SEVSPPP 114 Query: 129 IKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL-WNNNQP-KPFFKDY 186 + + I +I ++ SA V+ A WL W +P PF K Sbjct: 115 VIEEIPPAKIIPSTPQQTTQIP----WFEVLFSASVVIATLIIWLVWYQTRPVMPFSKFV 170 Query: 187 KTVAEI---NGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIV 243 + + C + + D F+ + C+ + ++ + ++ Sbjct: 171 QASMQTPSRQNCKIYYSPNEHDQQGYFNLMQLH----PYLCENNKHVFLTGYSKAERIVA 226 Query: 244 MACNKNYNQHEVANCLTLSY 263 C+K+ A C T Y Sbjct: 227 FVCDKDARVDANAFCTTHYY 246 >UniRef50_C4SF84 DNA-binding winged-HTH domains n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4SF84_YERMO Length = 276 Score = 169 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 56/269 (20%), Positives = 105/269 (39%), Gaps = 27/269 (10%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN N+++ L N + LT S L LL++ +++ + +WE Sbjct: 1 MEYIINGNVKYNSSDGTLFCPDNNIDMITLTRVTSELLLLLIKNNGAPLSRDTILSELWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN----- 115 + G+ +N L +S++R+ G T +LI T+P+ GF DI + Sbjct: 61 KRGLTASSNNLNNYVSMLRKALAQCGYT--NLIVTIPKHGFLFEADITEMGEDNHLTRTD 118 Query: 116 ----SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171 T H + P A ++ +K S+ G F ++ I ++ F Y+ + Sbjct: 119 PKSVELTQRHEVDPPLASAISDHHKTSLSG--FFKGRVAVLILFFAVLTLLFSPSIYNYF 176 Query: 172 WLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFD---KYKTRILDSGINCKKHP 228 L + + I+ C + +DT L + K I + C Sbjct: 177 RLQSLR---------TLLFNIDQCRIYLMDDTTRRLDSSNTISTIKMIINTGNLKCDSPA 227 Query: 229 WLYF--PLAKSSPGMIVMACNKNYNQHEV 255 +Y+ K S G ++M +Y +++ Sbjct: 228 NVYYFADKKKDSSGHVIMTDMLSYCPYDI 256 >UniRef50_C7BJK4 Putative membrane protein n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BJK4_PHOAA Length = 312 Score = 163 bits (412), Expect = 6e-39, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 101/243 (41%), Gaps = 16/243 (6%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++IN + F P+ + L +N V L+ PASR L++ + + ++D VWE Sbjct: 26 MKYVINIIVVFDPKEKTLALFNNPLNTVKLSNPASRLFLELIKNNGETIPREDLLKNVWE 85 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI----------- 109 + G + L IS IR+ A T ++I T+P+ GF++ DI + Sbjct: 86 DYGFTGSNSNLNSYISEIRKNL-ACLSTDLTVIKTIPKVGFRLEADIQVSLQESPEEENN 144 Query: 110 -QNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY 168 +I S +D ++ + +V E+ ++ NN + K +K+ + + F+ Sbjct: 145 ADTDIIISESDINSLHRKDRPRVEDLEGENRVLKEHRNNHVNKWLKARIFLGIVFIFLLL 204 Query: 169 SAYWLWNNNQPKPFFKD-YKTVAEINGCHFNVTEDT--IDGLKEFDKYKTRILDSGINCK 225 S Y + + + ++ Y + + C + + + I + I+C+ Sbjct: 205 SFYVFYLSKRTVEISQEHYSYLYKTGKCKVFSLDYKLGYSKATLREMAEQDISNEKIDCQ 264 Query: 226 KHP 228 Sbjct: 265 SVK 267 >UniRef50_A8GJD8 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568 RepID=A8GJD8_SERP5 Length = 267 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 95/237 (40%), Gaps = 15/237 (6%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN +++ LI N+ + LT A+ L L + + + D +W Sbjct: 1 MEFIINRVLKYNSSDGTLICPDNSVDMITLTRVANELLFLFINNNHISLRRDDILNELWG 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ-NHVINSSTD 119 + G+ +N L +S++RR G LI T+P+ GF D+ + + ++ TD Sbjct: 61 KRGLSASSNNLNNYVSMLRRALEQCGFAG--LITTIPKYGFIFEADVVVVATNALSEDTD 118 Query: 120 AHTHN-APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178 N A ++ N K+ + F++ LK ++++ Y+ +N+ Sbjct: 119 QTDENEALASLVFNNEEKKINPKVRYFSSVTLKTAFVFMVIIMMLFSSQIYDYFYLKSNR 178 Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFD---KYKTRILDSGINCKKHPWLYF 232 + F + C F + +D I G E D K INC +Y+ Sbjct: 179 TEVF--------SMGKCTFYLIDDKIGGRVEEDVIHNMKVAAKKEKINCDVKSNVYY 227 >UniRef50_Q2NSQ9 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSQ9_SODGM Length = 270 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 61/279 (21%), Positives = 110/279 (39%), Gaps = 27/279 (9%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFP--DVVAQQDFFTRV 58 M +IIN + F L V +AD +V L+ A R L L++ + V ++ F V Sbjct: 1 MKYIINSTVAFDTTEYLLTLVDDADTSVKLSNSAGRVLEELIQYRGTGEPVTREHLFASV 60 Query: 59 WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118 W G++ L Q +S+IR+G ++G S I T+P+RG K+++ + I + Sbjct: 61 WSAHGLQPSNGNLNQQVSLIRKGLTSLG-LDASAIITIPKRGLKLNDQLVISTLEEDVFQ 119 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178 A G KN N + + L+++ + + + +++ Sbjct: 120 ATCIPAVNEFPMELAPPVMLSRGRKNINGAL-----TLLMVIVTLLTVIMAYIYYEDDDN 174 Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGIN---CKKHPWLYFPLA 235 K +F ++IN C T I GL++ D + N CK + + F Sbjct: 175 QKLYFS-----SQINSCKVY-TFHPIPGLEKEDYRLRIVEAMKGNVEKCKNNYIVIFSKT 228 Query: 236 KSSP---------GMIVMACNKNYNQHEVANCLTLSYRE 265 + C K+ + H ++NCL + Sbjct: 229 LIPDPLIQDNINVRTFMAKCRKDEDDH-ISNCLNFFFYN 266 >UniRef50_C4UHM9 Transcriptional regulatory protein, C n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UHM9_YERRU Length = 300 Score = 156 bits (394), Expect = 7e-37, Method: Composition-based stats. Identities = 74/298 (24%), Positives = 126/298 (42%), Gaps = 43/298 (14%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 I N+ + + L +++N V LTTPA+ CL ++ +VV+Q+ FFT VWE G Sbjct: 6 IFNNKVVYDHAIAALYNINNKSEMVFLTTPANHCLLIITNNRHEVVSQRTFFTEVWENHG 65 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA--- 120 + +NT YQNISIIRR F+ +G T +I TVPRRG +I ++I I + S Sbjct: 66 APINSNTFYQNISIIRRAFKQLG-LTEDVIVTVPRRGVRIGSNIEISSFPPISGQTPESM 124 Query: 121 -----HTHNAPPAIKVNAGYKESIGGAKN-------------------FNNKILKHIKS- 155 + + Y+E + + N+ L+ +K+ Sbjct: 125 VLIAKESAEVSKQDNEDTQYQEDVKNFTHNHSDNRIVEERGDFYYSGSNNSSFLRLVKTI 184 Query: 156 ---------HLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCH-FNVTEDTID 205 +I I A+SA + K F DYK+ + C F+ I+ Sbjct: 185 PSIWDVNYHIVIAFIFLAIMAFSASVFDSYFYSKSRFYDYKSSFLLEQCDVFSQISRDIE 244 Query: 206 GLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSY 263 K + I + I+C++ +YF + P + ++ C+ + + C + + Sbjct: 245 IRKSVEH---MIKINNISCQEPKRVYFSSFPALPRLSLIVCDGDILKSG-TYCNSYYH 298 >UniRef50_C4SV61 Putative uncharacterized protein n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SV61_YERFR Length = 258 Score = 156 bits (394), Expect = 7e-37, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 110/264 (41%), Gaps = 25/264 (9%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++IN ++ F+P + S+ + V L +P ++ L + ++Q + + W E+ Sbjct: 9 YVINGDVIFYPGSGIVSSLLTGN-TVKLNSPTAQLLEAFVSRVGITISQSELYNIAWGEK 67 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS---STD 119 G V NTLYQNIS++R+ + VG T S + TV +GF I+N N + Sbjct: 68 GSSVTPNTLYQNISLLRKALKDVGVTGES-VTTVRGKGFIFTMATVIENMTDNEIVKNIS 126 Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179 ++ K+ Y +GG +++L F I + Y++ + Sbjct: 127 LECNDNKTKKKMIIVYSIIMGGC-------------FILILLYFFIKSQPGYFVARKSDG 173 Query: 180 KPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239 F + E +++ + D + + D + L S C+ +P+LY L++ Sbjct: 174 FSF----SHINEKCFIYYDNSNDMNSIIPDIDVFLEGTLSS---CQVYPYLYISLSELHS 226 Query: 240 GMIVMACNKNYNQHEVANCLTLSY 263 + + +C + C T + Sbjct: 227 TISLTSCKNEIINNSKNVCKTELF 250 >UniRef50_C4SZK7 Putative uncharacterized protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4SZK7_YERIN Length = 247 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 20/259 (7%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 IIN + + + + +++ + +V L P + CL +LL+ +P+V+ Q FF + WE++G Sbjct: 6 IINKIVAYDYNNAIIYNINKPEKSVSLYAPTNECLYILLDQYPNVIPQNYFFEQAWEKQG 65 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 + N YQ+IS+IRR F VG +I T+PRRG + D+ I H Sbjct: 66 LTTTNNNFYQHISMIRRAFEVVG-LNGDIILTLPRRGLSLSKDLEIT----------HEE 114 Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFF 183 K E+ A NN +L+ S +++S +I +S + + Sbjct: 115 KKRQDKKEEIVIDETSNNA-TINNSMLR--ASLWVVVSILIITLFSILLYNKKSPYEKSI 171 Query: 184 KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIV 243 ++Y V +I CH + D K I + INC K LY+ + Sbjct: 172 ENYNHVEDIELCHLFSLSEGYD----VSNVKEIIKNEKINCNKVKNLYYTTYPIIKRESL 227 Query: 244 MACNKNYNQHEVANCLTLS 262 + C+ + NC++ Sbjct: 228 IYCD--VLNNTPKNCISYL 244 >UniRef50_A8GBW4 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568 RepID=A8GBW4_SERP5 Length = 279 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 14/207 (6%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + +ND+I F + L +D + ++ P+ R L LL+ + V ++ F +VW+ Sbjct: 1 MKYRLNDHIIFDVDTGTLSLTELSDDPISISNPSKRLLLLLITHHGEAVGREVIFKKVWD 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ--NHVINSST 118 + GM N L Q +S +RR + +G +IATVP+ GF + +I ++ + NS T Sbjct: 61 DYGMVSGNNNLNQCVSKLRRVIKNLG-IEEEVIATVPKVGFMLRYEIIVEHCDGPENSFT 119 Query: 119 DAHTHNAP-----PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL 173 D T P P I +AG S+G ++ I S + + ++ A S Y Sbjct: 120 DEETSVIPHASVQPEIASSAGKPGSVGTVYAGYSRRWWTIASIVALGVIMLVVAISCYLT 179 Query: 174 WNNNQPKPFFKDYKTVAEINGCHFNVT 200 + ++ + + + + N C ++ Sbjct: 180 GSVSRQEIY------LGKANSCKVFMS 200 >UniRef50_C4T6D4 DNA-binding winged-HTH domains n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4T6D4_YERIN Length = 290 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 46/284 (16%), Positives = 96/284 (33%), Gaps = 25/284 (8%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +I+N I F P + L+ +++ + V L+ PASR L ++ + + + VWE Sbjct: 1 MKYILNLTIVFNPSEKILMELNDEERAVTLSNPASRLLLEFIKHQNEPIERDVLLKNVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI------ 114 + G + L +S +R+ A G+ +I T+P+ GF+ I Sbjct: 61 DYGFTASNSNLNAYVSELRKALAAFGEDPQ-IITTIPKYGFQFTARIESVLSPTLPAPDN 119 Query: 115 --NSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIML--------SAFV 164 D + + +++ + +L ML Sbjct: 120 GKEQDDDIAADTKEISTTIQPDTAPPHPPIAPLPQEVMAPGRKYLTMLRSKILLILVILS 179 Query: 165 IGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTRILDSGI 222 + A + N +Y EI+ C + ++ G + D + + + Sbjct: 180 VLATALKIYANWADVTIGKANYLLAGEIDQCQIFIQKNVAFPSGTETLDMARHDLRQRKV 239 Query: 223 NCKKHPW-LYFPL----AKSSPGMIVMACNKNYNQHEVANCLTL 261 +C +++ K + + C + C T+ Sbjct: 240 DCSVEKHSIFYTKGSDGYKINQLTFIGICAVDEQGR-YNECQTI 282 >UniRef50_B5FBZ3 Toxin transcriptional activator ToxR n=3 Tax=Vibrio fischeri RepID=B5FBZ3_VIBFM Length = 293 Score = 141 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 54/248 (21%), Positives = 89/248 (35%), Gaps = 37/248 (14%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 II D F P LI N D + L SR LSLL++ VV++ + VW ++G Sbjct: 9 IIGDRFLFDPNDNSLIDTLNDDEIIRLGGNESRVLSLLIQEPGKVVSRHELHEYVWRDQG 68 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI----------------HNDI 107 V ++L Q IS +R+ + + TVP+RG++ + Sbjct: 69 FEVDDSSLTQAISTLRKMLQDPTKLP-VYVKTVPKRGYQFISTAVAQVDPDQKIEAETEH 127 Query: 108 NIQNHVINSS---TDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIK--SHLIMLSA 162 N++N +N S T H +A A V +I N+ H+ ++++ A Sbjct: 128 NVENTPLNDSLNNTSVHQDDAQEAQTVAPQQNATIHQPSTANSAPQAHLSLLGTIMLIIA 187 Query: 163 FVIGAYSAYWLWNNNQPKPFFKDY---------------KTVAEINGCHFNVTEDTIDGL 207 FV+ + + +Y + I C D L Sbjct: 188 FVLPILAYVNHTPKSDAFVQVANYDNTPVFVPVNHPSIEQWKPLIEQCTNFYNSKHTDSL 247 Query: 208 KEFDKYKT 215 K + T Sbjct: 248 KPIEVIAT 255 >UniRef50_A8GL29 Transcriptional regulator, CadC n=2 Tax=Serratia RepID=A8GL29_SERP5 Length = 255 Score = 139 bits (351), Expect = 7e-32, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 93/265 (35%), Gaps = 12/265 (4%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++IN I++ L ++ + ++L PA R LS+ + ++ ++ VWE Sbjct: 1 MIFVINKTIKYNEYEGTLENIDDPGNTILLVKPACRLLSIFVRNNDMLIKRKQLLDEVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + G++ + L IS +RR + LI T PR+GFK I ++ +A Sbjct: 61 DYGLKATDSNLNNYISGLRRSLAKFDE--EELIITYPRQGFKF-----IAKKIVRQEANA 113 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 +++ G K + +K + A + + + + Sbjct: 114 ILSETDSVVELEKKESIRPDGPKEGQRRAYSWLKKTALQKMAVITVILLLPFFLSMAYKQ 173 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 + + + C +G++ + ++ + +C+ +Y+ Sbjct: 174 IPISNITNLGQYKNCDIYSI--KYNGMQPKE--IEHVISNRYSCEDKANVYYYFNIKEKS 229 Query: 241 MIVMACNKNYNQ-HEVANCLTLSYR 264 + A Y +C + Sbjct: 230 VSSHASLIAYCPLDVTTSCEISYIK 254 >UniRef50_B3INB4 Transcriptional regulatory protein, C n=2 Tax=Enterobacteriaceae RepID=B3INB4_ECOLX Length = 270 Score = 135 bits (340), Expect = 1e-30, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 106/272 (38%), Gaps = 9/272 (3%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++I + + + ++ + ++ L+ PA R L L+ ++ + D +VWE Sbjct: 1 MKYLIELTMLYEVDTGMIMINGEEESSIKLSNPAGRLLYELIINNGKILDRDDLIKKVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + G+ + +L IS IR+ FR +G LI T+ +GF + I + Sbjct: 61 DHGLSGSSVSLNVAISEIRKAFRTLGCAPL-LIKTIRGKGFSLAAHIEHHTVRPPVVSTL 119 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 +A A A K++ + + L L++++ + + + Sbjct: 120 SEQSASEAFDTLAHKKDADPPKQLISLHRLFISLCTLLLITVIGTAVLLLHQRDSYAESL 179 Query: 181 PFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTRILDSGINCK-KHPWLYFPLAKS 237 Y + +++ C + + + F+ K I I+C+ + +Y+ K Sbjct: 180 KDSDMY-LLGKVDRCTVYLINNNMYQPRQHHFNHVKEVIASQHIDCQHQVADVYYSRFKK 238 Query: 238 SP--GMIVMACNKNYNQHEVANCLTLSYREVN 267 S + C + + + NC++ YR + Sbjct: 239 SQIENYFLAICYQQDSIDDYKNCIS--YRRLT 268 >UniRef50_C4T4W9 DNA-binding winged-HTH domains n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4T4W9_YERIN Length = 290 Score = 132 bits (331), Expect = 1e-29, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 112/291 (38%), Gaps = 35/291 (12%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++IN I F P +KL+ +++ D+ V+L+ PA+R L ++ + + +WE Sbjct: 1 MKYLINYTIFFKPSEKKLMILNDEDIFVILSNPATRLLLEFIKHRNKAIDRITLLKDIWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI-------QNHV 113 + G + L +S +R+ F+A+G++ +I T+P+ GF+ + +N Sbjct: 61 DYGFTASNSNLNTYVSELRKAFKALGESPQ-VILTIPKHGFQFVAHVESQMKDERQENDC 119 Query: 114 INSSTDA---------------HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLI 158 + + D P KE+I + N + ++ L+ Sbjct: 120 LIDTQDISDEKVKNLNFKREFNRDEKQPDIDVTPITGKENI----DSNAEKMEFSAKILL 175 Query: 159 MLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTR 216 +L F + + ++ + K + +I C V +++ + + K Sbjct: 176 ILVIFTVTITAFKIYYSCAEIIINKKSHVLAGKIGKCMLYVKKNSTYPPADQLINLVKND 235 Query: 217 ILDSGINCK--KHPWLYFPLAKSS---PGMIVMACNKNYNQHEVANCLTLS 262 + I+CK + Y + C K + +C T+S Sbjct: 236 LQQDEIDCKNDNNEIFYLKGNNDHKFNQLTFIGICAKKE-GSDSTSCRTIS 285 >UniRef50_P15795 Cholera toxin transcriptional activator n=121 Tax=Gammaproteobacteria RepID=TOXR_VIBCH Length = 294 Score = 130 bits (326), Expect = 5e-29, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 5/224 (2%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 +I+ + F P LI +++ + L + SR L LL + +V+++ D VW E Sbjct: 19 KFILAEKFTFDPLSNTLIDKEDSEEIIRLGSNESRILWLLAQRPNEVISRNDLHDFVWRE 78 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN-IQNHVINSSTDA 120 +G V ++L Q IS +R+ + + + TVP+RG+++ + ++ + S A Sbjct: 79 QGFEVDDSSLTQAISTLRKMLKDSTKSPQ-YVKTVPKRGYQLIARVETVEEEMARESEAA 137 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLI---MLSAFVIGAYSAYWLWNNN 177 H + P ++ A A N ++ ++ + + +I L Sbjct: 138 HDISQPESVNEYAESSSVPSSATVVNTPQPANVVTNKSAPNLGNRLLILIAVLLPLAVLL 197 Query: 178 QPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221 P +K + ++G N+ + D + + Sbjct: 198 LTNPSQTSFKPLTVVDGVAVNMPNNHPDLSNWLPSIELCVKKYN 241 >UniRef50_B2D6Y9 ToxR n=2 Tax=Vibrio cholerae RepID=B2D6Y9_VIBCH Length = 186 Score = 129 bits (323), Expect = 1e-28, Method: Composition-based stats. Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 2/155 (1%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 +I+ + F P LI +++ + L + SR L LL + +V+++ D VW E Sbjct: 7 KFILAEKFTFDPLSNTLIDKEDSEEIIRLGSNESRILWLLAQRPNEVISRNDLHDFVWRE 66 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN-IQNHVINSSTDA 120 +G V ++L Q IS +R+ + + + TVP+RG+++ + ++ + S A Sbjct: 67 QGFEVDDSSLTQAISTLRKMLKDSTKSPQ-YVKTVPKRGYQLIARVETVEEEMARESEAA 125 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKS 155 H + P + A A N ++ + Sbjct: 126 HDISQPECVNEYAESSSVPSSATVVNTPQPANVVA 160 >UniRef50_B2VCE9 Probable transcriptional regulator n=1 Tax=Erwinia tasmaniensis RepID=B2VCE9_ERWT9 Length = 134 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 1/108 (0%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN I F L S++N+ V L+ P +R L+ L+ +++ ++D +VWE Sbjct: 1 MNYIINKKIYFNSLKGLLNSMNNSVPMVQLSKPGARLLAELIIHSGEIMTREDLIKKVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108 + + + L +IS++R+ F + D T +I TVP+ GF++ +I+ Sbjct: 61 DHNLTPSGSNLSNHISLLRKAFLQL-DMTERIIITVPKVGFRLEAEID 107 >UniRef50_D2TAS4 Cholera toxin transcriptional activator n=2 Tax=Erwinia pyrifoliae RepID=D2TAS4_ERWPY Length = 146 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN + F + L N+D + L+ P +R L+ L+ +++ ++D +VWE Sbjct: 11 MNYIINHYLCFDSSNGLLKLTDNSDSTLQLSRPGTRLLTQLIIHAGEIMTREDLIKKVWE 70 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS 117 + + + L +IS++R+ F + T +I T+P+ GF++ ++I+ S Sbjct: 71 DHDLTPSGSNLSNHISLLRKAFSQL-AVTEIMITTIPKVGFRLDAVVSIEKTAHRQS 126 >UniRef50_C5ZZN9 Putative uncharacterized protein n=1 Tax=Escherichia coli Vir68 RepID=C5ZZN9_ECOLX Length = 216 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 86/217 (39%), Gaps = 24/217 (11%) Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 M V N LYQ+IS++R+ G T ++I T PRRGF + +I I + + D + Sbjct: 1 MEVGPNALYQSISMLRKALSTCG-TPDNIILTAPRRGFSLSQEICISCDNLQEAMDEQSS 59 Query: 124 N-APPAIKVNAGYKESIG----GAKNFNNKIL---------KHIKSHLIMLSAFVIGAYS 169 + + K+N + E++ GA ++++ K + I S F Sbjct: 60 DWLNGSDKMNETHGENLMKEMWGAIPSESEMMEISSEYVRDKQCRKRKIDSSIFYYILIL 119 Query: 170 AYWLWNNNQPKPFF----KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCK 225 L F + Y E NGC+ + + D + +L +GI C+ Sbjct: 120 LTILSLIVPVYLVFLSDGEHYSKRFEFNGCYVYSRDASND-----NNTMDIVLKTGIKCE 174 Query: 226 KHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLS 262 ++Y + ++ C K + + NC++ Sbjct: 175 DRRYVYVTYFQGGDRESLIQCRKPLSTFSLPNCISYY 211 >UniRef50_Q7VR33 Transcriptional regulatory protein, C terminal domain n=2 Tax=Candidatus Blochmannia RepID=Q7VR33_BLOFL Length = 212 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 91/204 (44%), Gaps = 21/204 (10%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAF--PDVVAQQDFFTRV 58 M +II+ NI F L S+H++ ++ L+T A R L L++ V ++ FT V Sbjct: 1 MKYIIHSNIAFDTTEYILTSLHDSHASIKLSTSAGRILEELIKNRNTGLPVTREHLFTTV 60 Query: 59 WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118 W+ G+ L Q +S+IR+ +G + S+I TVP+RG KI+N + I+ Sbjct: 61 WKTHGLEPSNGNLNQQVSLIRKTLTLLGLNSSSII-TVPKRGLKINNQLIIE-------- 111 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSH-----LIMLSAFVIGAYSAYWL 173 H ++ P VN + I N ILK+ ++ ++ +I + +L Sbjct: 112 AVHNNSPNPQSTVNP-IENQINNTPPLPNTILKNTITYVKYILILTAMLIIIFSIGFIYL 170 Query: 174 WNNNQPKPFFKDYKTVAEINGCHF 197 +N + EIN C Sbjct: 171 YNKTNNTKLY----CCKEINSCDI 190 >UniRef50_B2VGZ0 Transcriptional regulatory protein n=1 Tax=Erwinia tasmaniensis RepID=B2VGZ0_ERWT9 Length = 190 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 1/182 (0%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 MY+I+N I+F+P+ +L ++ D ++VL+ PASR L L+ VV + VWE Sbjct: 7 MYFILNKTIKFYPDTNELAIINEQDNSIVLSKPASRLLLTLINHLNVVVTRDYLLKTVWE 66 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + G N LY IS +R+ F ++ + S++ TVP+ G ++ ++ N+ Sbjct: 67 DYGYTPSNNNLYMAISELRKSFSSL-NGGESILVTVPKVGLRLEALVDALEKGGNAEEKK 125 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 T + K + LK + +S +I + A +L+N + Sbjct: 126 ETRTETEIEPLAEEKPGEEEEKKISSIYRLKSNTGVKVKISLALILSSLAIFLFNLEENV 185 Query: 181 PF 182 P Sbjct: 186 PI 187 >UniRef50_D2YQP0 Transmembrane regulatory protein ToxR n=7 Tax=Vibrio RepID=D2YQP0_VIBMI Length = 280 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 6/196 (3%) Query: 2 YWIINDNIEFWPE-HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 +I+ + F P LI N++ + L + SR L LL + +VV++ D VW Sbjct: 7 KFILAERFTFDPLLSNSLIDKENSEEIIRLGSNESRILWLLAQRPNEVVSRNDLHDFVWR 66 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E+G V ++L Q IS +R+ + + + TVP+RG+++ + I + D Sbjct: 67 EQGFEVDDSSLTQAISTLRKMLKDSTKSPQ-YVKTVPKRGYQLITRVETVEEEIQNDMDE 125 Query: 121 HTHNAPPAIKVNAGYKESIG----GAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNN 176 TH + S K S L + ++ Sbjct: 126 VTHQETGIDFSESTNSTSSSNLGQTTATPQKVTSKATNSWGTRLILLIAMLIPLAVVYLT 185 Query: 177 NQPKPFFKDYKTVAEI 192 N + FK V ++ Sbjct: 186 NPSESKFKPLTVVDDV 201 >UniRef50_D2TQU5 Putative transcriptional regulator n=2 Tax=Enterobacteriaceae RepID=D2TQU5_CITRO Length = 242 Score = 127 bits (318), Expect = 4e-28, Method: Composition-based stats. Identities = 54/268 (20%), Positives = 96/268 (35%), Gaps = 27/268 (10%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + I I F E L+++ D + L+ ++R L+ LL D++++ + F V++ Sbjct: 1 MRFDIEGFITFDTEDASLVNLLTGDC-IELSQTSTRLLAELLNHRGDILSRNEIFQSVFD 59 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + G R + L Q IS +RR +G +I TVPR GFKI D + N Sbjct: 60 KYGARASNSNLNQYISTLRRNLSDLG-VKKEIIVTVPRIGFKISEDAIVNND-------- 110 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 P + F++ + I + AF++ Sbjct: 111 -REYRTPFLDEKDASLSLSAQTSPFHHLFTRIIA----LTIAFLLLMMKPGVYRPEADIH 165 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 K + + + +D + FD + +C K LY + G Sbjct: 166 KIVKGHCVIF------IPASLSLMDVKRSFD-----LTAQPFDCSKAKELYI-YRQQVQG 213 Query: 241 MIVMACNKNYNQHEVANCLTLSYREVNR 268 + + + C++ YRE N Sbjct: 214 TLGNIMQLLLMECDNEGCVSFYYREKNN 241 >UniRef50_Q1Z5R8 Transcription activator ToxR n=4 Tax=Photobacterium RepID=Q1Z5R8_PHOPR Length = 291 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 3/150 (2%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++I F P LI H +D L + SR L LL+E ++ + VW E Sbjct: 7 KYLIGQRFLFDPYDNSLIDQHESDELTRLGSNESRALGLLIEDPGAIITRNRLHDYVWRE 66 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS--TD 119 +G V ++L Q IS +R+ + + I TVP+RG+++ + + +++ T Sbjct: 67 QGFEVDDSSLTQAISTLRKALKDSTKSP-DFIKTVPKRGYQMIAPVEEYSSEASNTEHTV 125 Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKI 149 A T ++P + N +++ + + + Sbjct: 126 AETPDSPDSADENNHHQDGVRHSATAIAHV 155 >UniRef50_A8AP73 Putative uncharacterized protein n=1 Tax=Citrobacter koseri ATCC BAA-895 RepID=A8AP73_CITK8 Length = 233 Score = 124 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 80/240 (33%), Gaps = 16/240 (6%) Query: 25 DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84 V L +PAS L L++ VV+Q T W E+ NT YQ I I+R Sbjct: 2 QKTVTLQSPASLILLYLIQHNNTVVSQNQLITAGWGEKNHVTSANTFYQTILILRNALSD 61 Query: 85 VGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKN 144 +G LI T+ RRG I +I +S ++ K K Sbjct: 62 IG-LPRDLIKTIARRGMMISANIQTDEITAKASA---IEAPAQIVEPQMEPKGDTPIKKR 117 Query: 145 FNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTV--AEINGCHFNVTED 202 ++ L+++ + + P+ Y+ + + C + Sbjct: 118 HLSRPAALCGLALLVVMISIAASLFYM------SPESLLSSYEVLDSETFSSCTVLQKGN 171 Query: 203 TIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLS 262 + Y + C + +++ S+ + + C ++ ++ C+T Sbjct: 172 DV----LEKNYIRFMHKHREICDNNNYVFLSGMSSAKNITAIICPEDARENPSVKCITYY 227 >UniRef50_D0YIE0 Transcriptional regulator, CadC n=6 Tax=Klebsiella RepID=D0YIE0_KLEVA Length = 224 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 7/138 (5%) Query: 5 INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64 IN + F +L + V L P +RCL LLL+ V+++ +F VWE G+ Sbjct: 22 INHEVIFNANMNELRPLSGDGECVSLNAPTARCLLLLLQNSGKVISRDEFLAAVWETRGV 81 Query: 65 RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI------QNHVINSST 118 V NT YQNIS++R+ G + +I TV ++GF + D I + +N +T Sbjct: 82 VVSQNTFYQNISLLRKSLLKAG-LSADIIITVRQKGFSVAPDTLIIPLSDEECENMNRAT 140 Query: 119 DAHTHNAPPAIKVNAGYK 136 H N A Sbjct: 141 LTHYQNNKVADVTAESKG 158 >UniRef50_Q8D287 YqeI protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D287_WIGBR Length = 267 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 58/278 (20%), Positives = 108/278 (38%), Gaps = 28/278 (10%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLE--AFPDVVAQQDFFTRV 58 M +IIN + F L + ++ L+ A R L L++ ++++ F + Sbjct: 1 MKYIINSLVIFDTIEYNLSLFKKKNKHIKLSHSAGRVLEELIKFHKNSSPISREYLFKNI 60 Query: 59 WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118 W G++ L Q IS+IR+G + +G S+I T+P++G K+++ + I+ N++ Sbjct: 61 WIIHGLQPSNGNLNQQISLIRKGLKHLG-LNSSVIVTIPKKGLKLNDKLKIKKLEKNNAK 119 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178 D + K + S K L I S F ++ NN Sbjct: 120 DFIIDEISSSFKKRTLFNLSRINFKYKIIFSLISFIILFIFFSMFY-----SFKYKNNLN 174 Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFD---KYKTRILDSGINCKKHPWLYFPLA 235 K +F D ++N C T I L++ + K ++ CKK+ + Sbjct: 175 QKLYFFD-----QVNSCKVY-TFHPISILEKKEYDIKVAAAFEENDYKCKKNYIVIISKF 228 Query: 236 ----------KSSPGMIVMACNKNYNQHEVANCLTLSY 263 + C ++ N+ + NCL L + Sbjct: 229 VVSDDNLMKEDKKTNTFIEKCFRDKNERIL-NCLNLFF 265 >UniRef50_D0ZEM9 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEM9_EDWTE Length = 251 Score = 121 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 26/248 (10%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + +N+N+ + + +L + + D ++L A+R L LL+ V + F VW++ Sbjct: 11 YRLNENVLYNEQEAELKATVDGDA-ILLAPSANRLLHLLILNQGIPVTRDTLFKLVWDDH 69 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 G+R L Q IS++RR VG I T+P+ GF I I I Sbjct: 70 GLRSSNANLNQYISLLRRQLFDVG-LPKDTIVTIPKIGFMIDKTIAIT---------LIQ 119 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 + P + G ++ K+ I S I F++ + +++ N Q P Sbjct: 120 ESPPLKLFPEKGKDKT-------KQKLNTTIIS--ICTGLFLLSFLAIFFVSKNEQQLPK 170 Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMI 242 FK C+ +T L + K +C + G Sbjct: 171 FKFQPITNNTIECNIYSLSNTTTFLSNASELKRL-----KDCNASFDYFIYFNHEQKGRE 225 Query: 243 VMA-CNKN 249 +++ C K+ Sbjct: 226 LISWCKKD 233 >UniRef50_Q9RHQ9 Transmembrane regulatory protein ToxR n=2 Tax=Grimontia hollisae RepID=Q9RHQ9_VIBHO Length = 292 Score = 121 bits (302), Expect = 3e-26, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 79/224 (35%), Gaps = 17/224 (7%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 +++ + F P LI ++ D + L + R L +L+E +V + VW + Sbjct: 7 RYLLGERFVFSPSDSSLIDLYENDDLIRLGSNECRVLMVLIEEPHAIVTRNRIHDFVWRK 66 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQN-------HVI 114 +G V ++L Q+IS +R+ + + + TVP+RG+++ + + N Sbjct: 67 QGFEVDDSSLTQSISTLRKSLKDSTKSPM-FVKTVPKRGYQVVCSVEVYNEQEVELPEPA 125 Query: 115 NSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILK----HIKSHLIMLSAFVIGAYSA 170 S D P + + + K + L ++V + Sbjct: 126 ASVIDETAAKTEPELLSDNTAQTLPLPDAVAEQTEPKVSTNATAPAKMPLGSWVALVLTL 185 Query: 171 YW---LWNNNQPKPFFKDYKTVAEINGCHFN--VTEDTIDGLKE 209 + P P + ++ + I VT I + Sbjct: 186 LVPLAFQIASNPNPKSEAFREILTIENVPVYIPVTNARISQWQP 229 >UniRef50_A8GL31 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568 RepID=A8GL31_SERP5 Length = 256 Score = 119 bits (299), Expect = 7e-26, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 80/235 (34%), Gaps = 26/235 (11%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN I F + + + + V+LT R LSLL++ ++ ++ + W+ Sbjct: 1 MKFIINKRIIFHEDKSTIELLDDTIEPVMLTATLCRVLSLLVKNNDLLLTREFILSSAWD 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E G + L IS+IR+ F + G++ +I TVPR+GF + + + Sbjct: 61 EYGKSSTHSNLNNYISMIRKIFNSFGES--DIIITVPRQGFMFSAG-EVNTVDGETIQGS 117 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 + ++ A+ + + I+ N K Sbjct: 118 VSSDSLAAVVERKWHSAHLIALALMAAAIVMIAA---------------YPLFNKYNSAK 162 Query: 181 PFFKDYKTVAEINGCHFNVTEDTI---DGLKEFDKYKTRILDSGINCKKHPWLYF 232 + + C V E K K I NC +Y+ Sbjct: 163 -----MSEIGRVENCKVEVLTAAHYVKHADDELAKVKPLIEKLKFNCAVPATIYY 212 >UniRef50_D1RYQ0 Transcriptional regulator, CadC n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RYQ0_SEROD Length = 258 Score = 119 bits (298), Expect = 9e-26, Method: Composition-based stats. Identities = 53/235 (22%), Positives = 94/235 (40%), Gaps = 26/235 (11%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN I F + + + + V+LT R LSLL++ ++ ++ + W+ Sbjct: 1 MKFIINKRIIFHEDKSSIELLDDTIEPVMLTATLCRVLSLLVKNNNLLLTREFLLSNGWD 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E G + L IS+IR+ F + G++ +I TVPR+GF D +S + Sbjct: 61 EYGKSSSHSNLNNYISMIRKIFNSFGES--EIIVTVPRQGFMFSADEVNTVDGESSLSSV 118 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 PA + + ++L+A I +AY ++ QP Sbjct: 119 SRDLPAPAAAIKWKPAGLVS-----------------LVLAAMAILMVAAYPFFDRYQPV 161 Query: 181 PFFKDYKTVAEINGCHFNVTEDTI---DGLKEFDKYKTRILDSGINCKKHPWLYF 232 + + +I+ C V + E +K K I + NCK +Y+ Sbjct: 162 KHSE----IGKIDHCSVEVLTTSHYVKHTDDELEKIKPLIETARFNCKVPATIYY 212 >UniRef50_B4EUN0 Putative membrane protein n=2 Tax=Proteus mirabilis RepID=B4EUN0_PROMH Length = 274 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 47/270 (17%), Positives = 104/270 (38%), Gaps = 13/270 (4%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++IND+I F+ + L S +L P+S+ L L+ ++V Q++ F W ++ Sbjct: 2 YLINDDIIFYSDKNLLFSKKLNKEKKIL-APSSKMLIHLIT-VNELVTQRELFRIGWGDK 59 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 + + YQNI ++R+ F + D ++ TVPR+G+ I+++I+I+ N+ D Sbjct: 60 EKFITNSAFYQNILLLRKAFNEL-DIDDEIVITVPRKGYIINHNISIEKLSDNNIQDIKL 118 Query: 123 HNAPPA-------IKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWN 175 N ++ +I + + I K S +I + Sbjct: 119 INENKISDIPHIKKEIEEDINTNINNKDHSLSSIKKTSISLSKKKLFIIIFTLIVLFFVV 178 Query: 176 NNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKT-RILDSGINCKKHPWLYFPL 234 + + C + + ++ K I + + + ++Y Sbjct: 179 IFTFNYLDSRKHKLYNYSNCGTYKKYNLFCNKEILNEEKENLIDNYISSYSDYNFIYITE 238 Query: 235 AKSSPGMIVMACNKNYNQ--HEVANCLTLS 262 + S ++ C K ++ C+++ Sbjct: 239 SDSYSRTSLILCKKKFSPINFLHNQCVSIY 268 >UniRef50_C9PH99 Putative uncharacterized protein n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PH99_VIBFU Length = 262 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 46/271 (16%), Positives = 90/271 (33%), Gaps = 29/271 (10%) Query: 1 MYWIINDNIEFWPEHRKLISVH--NADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRV 58 M ++N + + L + ++ LT A+R L LL + + + Sbjct: 1 MKLLLNHTVIYNSSDGTLKLSDAESDHESLTLTPTANRLLELLSKHHGTPMERDVLLMEG 60 Query: 59 WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118 W++ G++ ++L Q IS +R+ +I T+P+ GF ++N+ I+N Sbjct: 61 WDKFGLKGSYSSLNQYISQLRKTLHKFTGV-DDIILTIPKVGFMLNNEFPIKN------M 113 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178 D + + K + L +++ +I Sbjct: 114 DPEPIAVSESTAKAHHAPKKKVTFKKYLYPFLYTSLFGVLVTGTTII------------- 160 Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDK--YKTRILDSGINCKKHPWLYF---- 232 K F++D + +I C D F K + I+C K ++F Sbjct: 161 SKKFYQDAYHIGKIEQCDVYNFRKRSDEGIAFQLSILKEEMQKLNIHCGKTEKVFFHSQN 220 Query: 233 PLAKSSPGMIVMACNKNYNQHEVANCLTLSY 263 L G + + + A C Y Sbjct: 221 SLFYGHSGRLFFSKCFLVDGKFSA-CENYYY 250 >UniRef50_UPI00018266EF transcriptional regulator, CadC n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI00018266EF Length = 184 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 4/126 (3%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADL-NVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVW 59 M +++ D + + E + D + +LT A+ + LL+ +VV ++ FF+ VW Sbjct: 1 MKYLLADVLVYNDEEGTFSHIDAPDDAHQILTGTANAVMKLLVRHHGNVVERELFFSEVW 60 Query: 60 EEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTD 119 + G++ N+L Q ISI+R+ I TVP++GF + DI +Q + D Sbjct: 61 DARGVQGSNNSLNQYISILRKLLAGF-VPEKPAIVTVPKKGFMLSADIRVQ--PMPDPAD 117 Query: 120 AHTHNA 125 H+ Sbjct: 118 KHSDAP 123 >UniRef50_D0YZ11 Transcriptional activator ToxR n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YZ11_LISDA Length = 299 Score = 116 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 1/140 (0%) Query: 5 INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64 I F P LI + + L + SR LSLL++ ++ + VW E+G Sbjct: 10 IGQRFIFDPYDNSLIDTVENNELIRLGSNESRALSLLIDEPGAIITRNRLHDYVWREQGF 69 Query: 65 RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHN 124 V ++L Q IS +R+ + + + TVP+RG+++ + + + T Sbjct: 70 EVDDSSLTQCISTLRKALKDPTKSPE-YVKTVPKRGYQMIATVEKYVDMPLAITATEHAE 128 Query: 125 APPAIKVNAGYKESIGGAKN 144 ++ + ++ A Sbjct: 129 DLTSVPEHHYQDSALVTAPQ 148 >UniRef50_C4SAM2 Possible regulatory protein n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4SAM2_YERMO Length = 243 Score = 113 bits (283), Expect = 6e-24, Method: Composition-based stats. Identities = 49/228 (21%), Positives = 86/228 (37%), Gaps = 12/228 (5%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M II NI F P R + + V + S LSLL +P +++++ +W Sbjct: 25 MDEIIIGNIIFTPSKRTI---NKGGAVVKIRNKESEVLSLLCHHYPSSLSREEIEREIWG 81 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E V NTL Q IS +R D L+ T+P++G+ I + + NS D Sbjct: 82 ES--YVTDNTLTQTISNLRHAL---DDKARELVTTIPKKGYCIGIKPDFTSS--NSLQDL 134 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 + V + + +F+ KI++ I S + +F + + S N Sbjct: 135 ILTQDDSMVSVKPKSTSLVSKSLSFHYKIIRLIVSIVGFFISFELTSNSHQIKINEVTTL 194 Query: 181 PFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTRILDSGINCKK 226 P V + + E I + + + + + C+K Sbjct: 195 PILVGLDQVLDKDFLSLYQKEPYIFLKKWSDGEYIICKYNNGELLCEK 242 >UniRef50_D2A9T6 Transcriptional regulator, CadC n=3 Tax=Shigella flexneri RepID=D2A9T6_SHIF2 Length = 254 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 97/265 (36%), Gaps = 31/265 (11%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++IIND I F P L +V+ D + A L++LLE+ V + V E Sbjct: 6 FFIINDAIIFDPNKCSLSNVNTQDE-INFPATAGCILAVLLESNGGAVDRNSIIDSVLER 64 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 + NTL Q IS++R+ F+ +G ++I T+P+ GF I +I I S Sbjct: 65 FSFDLSNNTLNQYISLLRKSFKNIG-VEENVILTIPKVGFYISENITI------SKQSYD 117 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 + + K SI + + ++ + + ++ + Sbjct: 118 DSHLQEDVVEKVERKRSIPLFRILISLVVVIVIIEMFAVA---------------FKDTY 162 Query: 182 FFKDYKTV--AEINGCHFNVTEDTIDGLKEFDKYKTR-ILDSGINCKKHPWLYFPLAKSS 238 DY V +I+ C ++E+ + + + I + C + + Sbjct: 163 SITDYPLVKSGKIDTCDLYLSENLNEIGIAKSQIEAAEISKKHLPCVPGANFIYDVNSMH 222 Query: 239 PGM-----IVMACNKNYNQHEVANC 258 + + C K+ N A C Sbjct: 223 YLLGEGQRYLSRCIKSSNDETYAIC 247 >UniRef50_B2Q575 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q575_PROST Length = 329 Score = 110 bits (274), Expect = 6e-23, Method: Composition-based stats. Identities = 47/309 (15%), Positives = 97/309 (31%), Gaps = 64/309 (20%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLL--EAFPDVVAQQDFFTRVW 59 ++IN+ F + + D V L+ PASR L+ ++ + +++ +VW Sbjct: 6 DYLINNKFIFETGKNFIFIKNEVDKFVELSKPASRLLNEIIILNQKSKIATREELLIKVW 65 Query: 60 EEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI------------ 107 EE G+ N L IS IR+ F +G S I TVP++GF+ D Sbjct: 66 EEYGLVGSNNNLNTYISEIRKKFELIGIDPKS-IVTVPKKGFRFDCDALETITDENDTPY 124 Query: 108 ----------------------------NIQNHVINSSTDAHTHNAPPAIKVNAGYKESI 139 + + H + I+ + Sbjct: 125 LPEEEIVVLNSSDVTLGLDDYEHSVTHSSQYSEKNAEEATTHFVDQKSIIEEHLHQPRQD 184 Query: 140 GGAKNFNNKI--------------LKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKD 185 ++ + K+ +++ + ++ N+ Sbjct: 185 NSISELSSTVQEEPQLLKIQNKGKFKNNPILFALIAMSLFLFIFVFYYTTNSNASMEVNS 244 Query: 186 YKTVAEINGCHFNVTEDTIDG--LKEFDKYKTRILDSGINCKKHPWLYFPLAKSS----- 238 Y TV+E + C + + I+ D ++ +NC++ + +S Sbjct: 245 YMTVSERDKCLIQIPINLIESSTKDSIDFVNKKLDKYNVNCQEPKRVILLSEPNSIQSVD 304 Query: 239 PGMIVMACN 247 + + C Sbjct: 305 KNISLSICK 313 >UniRef50_A0KHX7 Transcriptional regulatory protein, C terminal n=7 Tax=Gammaproteobacteria RepID=A0KHX7_AERHH Length = 269 Score = 107 bits (266), Expect = 5e-22, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 77/243 (31%), Gaps = 9/243 (3%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + IN + L + + + L+ A+ L +V++++ +VW+ Sbjct: 1 MRYHINARFIYDATDGSLTQRESVEPDSQLSITANALFYFFLRNTG-IVSREEVLKKVWD 59 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + G+ + L Q +SI+R+ FR ++I TV R +++ ++ I+ I Sbjct: 60 DNGLTSSNSNLNQYLSILRKAFRH--YDIDNIIITVSRGYLQLNPEVIIE--PIEHVPAP 115 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 P V A I + A N + Sbjct: 116 SIEIVPSPSTVAAAEPAFDPAEWPLPLTPRSRGICWYIAGGCMLAFALMLLAFGLLNGRE 175 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLK---EFDKYKTRILDSGINCKKHPWLYFPLAKS 237 P + + C +++ + + + ++ I+CK F Sbjct: 176 PRPVTLTGIPN-SQCELLASDEMLRSVSATTYGEHFEQVRQRLNISCKPGERFLFFYGDR 234 Query: 238 SPG 240 Sbjct: 235 LET 237 >UniRef50_B6XAC7 Putative uncharacterized protein n=2 Tax=Providencia RepID=B6XAC7_9ENTR Length = 272 Score = 105 bits (262), Expect = 1e-21, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 86/236 (36%), Gaps = 8/236 (3%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++IN NI + L N D + LTT +R L +L++ +V+ ++ +RVW+ Sbjct: 1 MKYLIN-NIIYDSHQGLLY-RDNIDDAIKLTTTLNRLLLVLVQNNGEVLDRETLLSRVWD 58 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST-D 119 E N L +IS++RR + +I T+P+ G K + + +N Sbjct: 59 EHNQVASDNNLNSSISVLRRHLSSF--FEEEIITTIPKVGIKFDAKLQSLSTKLNQKPHQ 116 Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179 N E+ ++ + K +I ++ + V+ + Sbjct: 117 EEQPNILLKESEQPSIIENSPKKQSLSVKEKSYILNNRYIELTLVVIIIFCLLYLFKSYF 176 Query: 180 KPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTR---ILDSGINCKKHPWLYF 232 +Y V I+ C + + I+CKK L++ Sbjct: 177 FATRTEYPEVGRIDQCSIRYINSYHKPDMTTINFTDLQNQLTRLNIDCKKPATLFY 232 >UniRef50_A7MIL4 Putative uncharacterized protein n=2 Tax=Cronobacter RepID=A7MIL4_ENTS8 Length = 148 Score = 103 bits (257), Expect = 6e-21, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 4/109 (3%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEA-FPDVVAQQDFFTRVWEE 61 ++IN N F + +L + NA + + +T+ +RCLS ++E V+ +Q +W Sbjct: 4 YLINHNCIFTEANNELKNTDNACV-IKMTSMRARCLSFIIENAKNGVIEKQQIAAFLWGN 62 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ 110 G + L Q + ++RR RA+G + L T+P+ G K+++D+ + Sbjct: 63 RGQFISDANLTQVLYLLRRDLRALGI--NDLFVTIPKLGIKVNDDVPVD 109 >UniRef50_A1JPG4 Possible reguatory protein n=5 Tax=Yersinia RepID=A1JPG4_YERE8 Length = 219 Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 12/228 (5%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M II +I F P R L + + + S LSLL +PDV++++D ++W Sbjct: 1 MNDIIIGDIIFTPLKRTL---NKGGSVIKIRNKESEVLSLLCFHYPDVLSREDIEKKIWS 57 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E V NTL Q IS +R D H L+ T+P++G+ + N ++ + + Sbjct: 58 ES--YVTDNTLTQTISNLRHALN---DKKHELVTTIPKKGYCLGVKPNFTDNDFSEISSV 112 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 ++ N ES+ K + + + + + ++F + + N + Sbjct: 113 TQTEVLDSLAYNTT--ESLSKQKYLASGFIVFMMFCVCLATSFNVTSDYYQIKITNVKNL 170 Query: 181 PFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTRILDSGINCKK 226 P + + + + E I K + ++ GI C+K Sbjct: 171 PLTINIDEIHDKDFLSSYNKEPYIFLKKQKNSEYTVCKLQHGGITCQK 218 >UniRef50_B5F706 Putative uncharacterized protein n=20 Tax=Salmonella enterica subsp. enterica RepID=B5F706_SALA4 Length = 149 Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 5/131 (3%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEA-FPDVVAQQDFFTRVWEE 61 + IN+ + R++IS+H+ + +T +RCLS L E + ++ ++ VW E Sbjct: 4 YTINNEFIYNESLREIISLHDK-KVLKVTLMRARCLSYLFENAYKKLITREMISHAVWGE 62 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI-NSSTDA 120 V L Q + ++RR + +G L T+PR+G KI I I + Sbjct: 63 RSQFVSDANLTQLLYLLRRDLQQIGLF--ELFVTLPRQGIKIDERFIIDAADIPPQAIQH 120 Query: 121 HTHNAPPAIKV 131 HTH I + Sbjct: 121 HTHRCNKIISI 131 >UniRef50_B4TIC0 Putative uncharacterized protein n=33 Tax=Enterobacteriaceae RepID=B4TIC0_SALHS Length = 147 Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 10/152 (6%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFP-DVVAQQDFFTRVWEE 61 +IIN N + +L +V N+ + +T ++CLS ++E +++ +Q T +W Sbjct: 4 YIINSNCIYNEGKYELRTVSNS-QVIKMTAMRAKCLSFIIENAHLEIIERQKITTALWGS 62 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 V L Q + +IRR +A+G + L T+PR+G K+++DI I +TD+ Sbjct: 63 RSHYVNDANLTQILYLIRRDLKALGI--NDLFITIPRQGLKVNSDIAI------IATDSE 114 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHI 153 T I + + + + HI Sbjct: 115 TKGRKKQIVRQTIAALTTVFSVTLGSLMYLHI 146 >UniRef50_D2T558 Protein rcaC n=3 Tax=Erwinia RepID=D2T558_ERWPY Length = 249 Score = 99.5 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 87/258 (33%), Gaps = 14/258 (5%) Query: 8 NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 + F PE+ L N +++ +T RCL L++ + ++ W + G+ V Sbjct: 2 RVYFEPENCILS---NDKMSIKITLQEGRCLDYLVKNEGKFIRREKLLEECWIKRGVTVS 58 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPP 127 + + Q++ +RR F G S + T R+G + Q I T +HN Sbjct: 59 DSAVRQSLYRLRRAFEDAG-LPPSTLTTQARKGHIL------QEGSIILLTAHASHNCVD 111 Query: 128 AIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYK 187 K+ + + S FVI + L+ Q +Y Sbjct: 112 IESSVPSMKKQGTYRHTHLYSTVTSLLPFAKFASLFVIFFLAG--LYTRQQIMITEVNYH 169 Query: 188 TVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACN 247 E G + ++ K + + +N ++Y + CN Sbjct: 170 QAEEKEGRFYFYRKNQAPYESAASKINYWLDNKLVNASDMKYVYLN-NSWAGNTSFYLCN 228 Query: 248 KNYNQHEVANCLTLSYRE 265 + ++C +++ + Sbjct: 229 EEIGSEG-SHCTSVTVKG 245 >UniRef50_A6AKR5 Transcriptional regulatory protein, C n=3 Tax=Vibrio RepID=A6AKR5_VIBHA Length = 250 Score = 99.1 bits (245), Expect = 1e-19, Method: Composition-based stats. Identities = 49/251 (19%), Positives = 98/251 (39%), Gaps = 24/251 (9%) Query: 10 EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69 + P L N + + + S+ L+LLLE P+VV +QD W E + Sbjct: 3 LYNPIKNTLS---NGEKTIKIGYRESQILTLLLERSPEVVKKQDIVQFAWGNE--YIGET 57 Query: 70 TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAI 129 +L ++IS++R+ F +G S I TVP+ G+++ D+ + ++ T NAP Sbjct: 58 SLAKSISVLRQSFIKIG-IKDSPILTVPKVGYRLVEDVLLNECLV-------TINAPREE 109 Query: 130 KVNAGYKESIGGAKNFNNKI-LKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKT 188 V A +E+ A K +++ +++ LS ++++ P F Sbjct: 110 IVPAKPEETSQPAYAAKQKPGYRNLVCYVVSLSFLFAAVLMVASKYHSSYSHPQFSKLLN 169 Query: 189 VAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVM--AC 246 + ++ T L + + + ++ C +Y G+ + Sbjct: 170 EHTVGSLEVYMSPSTSLSL----RVQELLAENQCQC----VVYIEENNGFSGLSWLNKKT 221 Query: 247 NKNYNQHEVAN 257 K+ N + Sbjct: 222 RKSINVFYTPD 232 >UniRef50_C2LLY1 Regulatory protein n=9 Tax=Enterobacteriaceae RepID=C2LLY1_PROMI Length = 295 Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 50/289 (17%), Positives = 102/289 (35%), Gaps = 34/289 (11%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + IN +I + + S+ D++ L+ A+ L ++ VV + + RVW+ Sbjct: 10 MKYRINASIYYDATDGAI-SLEKGDVDTHLSITANALLFYFIQNPG-VVNRDEVLKRVWD 67 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN----- 115 + G+ + L Q +S++R+ FR G ++I T+ + + + DI+++ + Sbjct: 68 DNGLVSSNSNLNQYLSLLRKTFRHYGI--ENIIVTIAKGRLEFNPDISVELIDDSTLLPV 125 Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILK-------------HIKSHLIMLSA 162 + T+ H A + + N ++++ K + Sbjct: 126 TQTNEHEGEANKSNIASPIETSLSSEPDNLDSELEKEPQLSVTSPQKPEICWYLASIGFL 185 Query: 163 FVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTR---ILD 219 F N +Q KP T N C E I+ + + Sbjct: 186 FGAIFLVVIIFLNQHQSKPIT---LTPLTHNDCELLSNEAMINSSVSDNYIRNFDAVRKK 242 Query: 220 SGINCKKH-PWLYFPLAKSSP----GMIVMACNKNYNQHEVANCLTLSY 263 + C K +++F K + + C KN + + C Y Sbjct: 243 LNLQCVKGERFVFFYGDKLQTNGLGRVFLAHCAKNEDN-PFSYCDNYFY 290 >UniRef50_B1JQB0 Transcriptional regulator, CadC n=18 Tax=Yersinia RepID=B1JQB0_YERPY Length = 250 Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M I+ +++ F P+ R + + S LSLL E +P+ ++++D R+WE Sbjct: 1 MNTIVINDVFFTPQKRTI---DRNGKVTKIRNKESELLSLLCEYYPEPISREDIEKRLWE 57 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI 109 G V NTL Q IS +R D H L+ T+P++G++I I Sbjct: 58 --GSYVTDNTLTQTISNLRHAL---DDKKHELVVTIPKKGYRIGIKPEI 101 >UniRef50_UPI000197C3BF transcriptional regulator, CadC n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C3BF Length = 261 Score = 97.2 bits (240), Expect = 5e-19, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 91/232 (39%), Gaps = 7/232 (3%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +I+N+ I++ + ++ V + LT + +L++ + +++ ++ Sbjct: 1 MIYILNNIIKYNSDLGEIFRVDTELSVMKLTPVLNYIFIILIQNNKTTITREEILKKILN 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + ++V NTL Q IS +R+ + I ++ ++G I ++I I+ + + Sbjct: 61 KYDLKVSINTLNQYISTLRKVLHQQ-LLVENAILSISKKGLVISSEIQIEESIAKFNNKI 119 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 PP N K + KN K I S ++ ++ Y + P Sbjct: 120 EKSLVPPPTSSNKSNKSLLLSDKNHIIKKTLLIISVFLL----LVIIYLINQIHAIKFPY 175 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYF 232 + YK ++ I C +D + D + +D + C+ Y+ Sbjct: 176 ASIQSYK-ISTIGDCPVYGFKDNYEK-NMSDTISKQAIDFNLTCEDSDVFYY 225 >UniRef50_B2VJM5 Probable transcriptional regulator n=1 Tax=Erwinia tasmaniensis RepID=B2VJM5_ERWT9 Length = 218 Score = 97.2 bits (240), Expect = 6e-19, Method: Composition-based stats. Identities = 39/216 (18%), Positives = 67/216 (31%), Gaps = 21/216 (9%) Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 M + +LYQNIS +RR G +I T+PRRGF + I T+ Sbjct: 1 MEPTSTSLYQNISNLRRALNKSG-LNEGIIRTMPRRGFLLSPLTEIVRETYTPDTETLPD 59 Query: 124 N----------------APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGA 167 + + S K +K + ++ I + Sbjct: 60 LTTAGGVDRAEKEVFLPPTSEVSEKPTTRRSDTKTTASIEKKIKRMAAYGI-GLMLIFLL 118 Query: 168 YSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKH 227 A N + + + C V D ++ + I+C+ H Sbjct: 119 ILAPLYLNKAETLQNNSLFVPFMHSDRCSIFV---NRDSRLSSEEIHKFVSVLNISCQTH 175 Query: 228 PWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSY 263 + Y K++ V C + + E A C + Y Sbjct: 176 RYFYITTYKNADRASVFMCQNSLLEKENAWCHSDYY 211 >UniRef50_D1P736 Putative transcriptional regulator with C-, effector domain of the bipartite response regulator n=4 Tax=Providencia RepID=D1P736_9ENTR Length = 322 Score = 94.5 bits (233), Expect = 4e-18, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 5/141 (3%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCL--SLLLEAFPDVVAQQDFFTRVW 59 + I++ F + + D +V L+ PA+R LLL + + + T VW Sbjct: 6 DYTIDEKFIFEQRKCLIYLKGDLDQSVELSKPAARLFGEILLLNFKKGIATRDELLTNVW 65 Query: 60 EEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTD 119 EE G+ N L IS IR+ VG + I TVP++GF+I + ++ I+ + Sbjct: 66 EEYGLVGSNNNLNTYISEIRKKLEQVGIDPKT-IVTVPKKGFRIDSHLS--KFKIDDDAE 122 Query: 120 AHTHNAPPAIKVNAGYKESIG 140 ++ ++ + + Sbjct: 123 IISNEIITKDDYDSLHPSLVP 143 >UniRef50_D0XI00 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XI00_VIBHA Length = 267 Score = 93.7 bits (231), Expect = 6e-18, Method: Composition-based stats. Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 9/166 (5%) Query: 6 NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65 N I + P L N++ V + S+ L+LLLE P VV ++D W E Sbjct: 17 NRMILYNPIKNTLS---NSNKTVKIGYRESQILTLLLEHSPAVVEKRDIVQFAWGNE--Y 71 Query: 66 VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125 + +L ++IS++R+ F VG S I TVP+ G+++ + + ++ Sbjct: 72 IGETSLAKSISVLRQTFTKVG-MKESPIVTVPKVGYRLVEGVLLNECLV---AATPPDEK 127 Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171 V + + +I S I+ +A ++ A + Sbjct: 128 VQQKSVQQPTPPLPNKHETNYKNLACYIVSLGILFAASLVSASKFH 173 >UniRef50_A6XSQ7 ToxR2 n=9 Tax=Vibrio RepID=A6XSQ7_VIBCH Length = 183 Score = 93.7 bits (231), Expect = 6e-18, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 71/176 (40%), Gaps = 12/176 (6%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 +++ + + F R++++ D + L + L LL E V+ +++ +VW + Sbjct: 4 NYLLGNQVIFDTLKREVLTT---DKIISLGGREASILKLLCENANTVITKEEINDKVWGK 60 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND------INIQNHVIN 115 + V +L + IS +R+ + + I T+P+ G+ + + + ++ Sbjct: 61 --VFVSETSLTKAISNLRKSLQLIDGVMCE-IKTIPKEGYMLILEGESLGLMVTEDEPPL 117 Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171 + + A ++ +K N +IK ++L+ F S++ Sbjct: 118 EVKRIESKDLAMIKAPAANHRFLPALSKTEENTHSGYIKPSWLLLAVFSSALISSF 173 >UniRef50_A9MR60 Putative uncharacterized protein n=11 Tax=Salmonella enterica RepID=A9MR60_SALAR Length = 149 Score = 92.2 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEA-FPDVVAQQDFFTRVWE 60 + IN++ + R++IS+ + + +T +RCLS L E + ++ ++ VW Sbjct: 3 KYTINNDFIYNESLREIISLRDK-KVLKVTLMRARCLSYLFENAYKKLITREMISHAVWG 61 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN 115 E V L Q + ++RR +G L T+PR+G KI I + I Sbjct: 62 ERSQFVSDANLTQLLYLLRRDLEQIGLFK--LFITLPRQGIKIDERFIINSADIP 114 >UniRef50_C9PHD6 Transcriptional activator ToxR n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PHD6_VIBFU Length = 203 Score = 91.8 bits (226), Expect = 2e-17, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 3/146 (2%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 +IN F + L + D +++ SR L+LL V++++D + +VW E G Sbjct: 9 VINSRFLFDAVEKSLTDAY--DEKIIIGDNESRILTLLTSHPNAVLSREDIYQQVWVERG 66 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 +V ++L Q+IS++R+ I T R G++ ++ VI Sbjct: 67 NKVDDSSLTQSISLLRKVLGDKATNPE-YIKTEARIGYRFIAPVDPVYSVIPLEELVEVT 125 Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKI 149 N + + N++ Sbjct: 126 EQNVQPAANTRQTPAYPEQRYINSEF 151 >UniRef50_A4XNQ3 Transcriptional regulator, CadC n=1 Tax=Pseudomonas mendocina ymp RepID=A4XNQ3_PSEMY Length = 277 Score = 91.8 bits (226), Expect = 2e-17, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 80/199 (40%), Gaps = 19/199 (9%) Query: 11 FWPEHRKLISVHNA-DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69 F+P +L V + + + L SR L L+ +VVA+++ + W + V Sbjct: 32 FYPALYQLTLVRSGIEEKIDLGYSGSRLLERLVREPGEVVAREELMSHAWADR--VVGQG 89 Query: 70 TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAI 129 +L Q I +R+ + + +I T+PRRG+ ++ + I+ +AP Sbjct: 90 SLNQQIYTLRQILGD--EKSREIIQTLPRRGYLLNPSYLVYPPSIDDIGAVQEADAP--- 144 Query: 130 KVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYW-LWNNNQPKPFFKDYKT 188 G NF ++ + S L++LSA + A + L+ + P Sbjct: 145 ----------GTPPNFLHRHSRRRTSWLVLLSALGLMAVGLFVALYQFSLPARLHSSELN 194 Query: 189 VAEINGCHFNVTEDTIDGL 207 + +I+ + + + L Sbjct: 195 LGQISLLYVDQDAQRLQQL 213 >UniRef50_A3USG7 Cholera toxin transcriptional activator n=1 Tax=Vibrio splendidus 12B01 RepID=A3USG7_VIBSP Length = 239 Score = 91.4 bits (225), Expect = 3e-17, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 76/213 (35%), Gaps = 6/213 (2%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 +IIND+I+ E ++ + + S L + +V+ +Q +VW Sbjct: 4 EFIINDDIQVNLEESEIHHFKTG-RTYPIGSNESELLKFFISRPNEVITRQVLIEQVWVS 62 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 +G+ V +L Q ISI R+ D + +I T +G++ + S + Sbjct: 63 KGIYVEDGSLMQTISICRKALE---DKSGMIIVTERGKGYRFAGQVTQDKERALSKIQSQ 119 Query: 122 THNAPPAIKVNAGYKESIG-GAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 + + + K S L +++ FV+ A +++L++ Sbjct: 120 PKQETKQPENSKAIDSIATENSTTEKTAATKKTNSVLALIALFVVTAGLSHYLFSYLDRN 179 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKY 213 +D I C E T + L Y Sbjct: 180 SLGEDLVGQHFI-SCRIESDEFTFNELFNVTLY 211 >UniRef50_C9NME3 Putative transcriptional activator ToxR n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NME3_9VIBR Length = 255 Score = 91.0 bits (224), Expect = 3e-17, Method: Composition-based stats. Identities = 36/235 (15%), Positives = 77/235 (32%), Gaps = 17/235 (7%) Query: 9 IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68 I F KL N + + ++ L LLL+ P+VV + D W E + Sbjct: 2 IIFHSVQNKL---SNTQRVIKIGYREAQVLDLLLKHSPEVVKKHDIVQHAWGSE--YIGE 56 Query: 69 NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPA 128 +L ++IS +R+ +G S I TVP+ G+++ + +I+ N P Sbjct: 57 TSLAKSISTLRQALLKLG-AKESPIVTVPKVGYRLVS-HSIEYAPAEPPPQIDKSNPAPN 114 Query: 129 IKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKT 188 + +A + + + + F + + + + + D Sbjct: 115 LPTSAASSSQRVTSNLSLKECKSPLCYVAAIALLFASSILALSKV-HGWRWEDIPSDQHL 173 Query: 189 VA-EINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMI 242 + +T L + + + +C +Y + + Sbjct: 174 ARHTVGQLQVFTESETRLSLP----LRQLLSQNQCDC----VVYIEKNERFSELS 220 >UniRef50_D2A7F9 Membrane protein n=2 Tax=Shigella flexneri RepID=D2A7F9_SHIF2 Length = 201 Score = 91.0 bits (224), Expect = 4e-17, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 11/149 (7%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 Y+ + ++F+P R++ + + L+ R L LLL+ D +Q VW Sbjct: 6 FYFSLGQGVKFYPASRRITTSTGN--VINLSENGYRFLLLLLQGESD---KQHIINEVWR 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E+ V ++ Y I ++R+ G + SLI T+PR+G + ++ HV + D+ Sbjct: 61 EQKGSVSDSSYYGQIYMLRKALDVAG-LSSSLIKTIPRKGVRYLG--KVEKHVCENERDS 117 Query: 121 HTHNA---PPAIKVNAGYKESIGGAKNFN 146 ++ + +I N Sbjct: 118 DEDSSSYTNDSEAREVNTDANIPENDNSQ 146 >UniRef50_C4U6Y3 Putative uncharacterized protein n=1 Tax=Yersinia aldovae ATCC 35236 RepID=C4U6Y3_YERAL Length = 144 Score = 89.5 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN+ + F + + + ++ V L++ +SR LSLL+E V++ + VWE Sbjct: 1 MKYIINNTVIFVEDDG-IYLKDSTEVEVKLSSLSSRILSLLIENKGKPVSRDMIYKLVWE 59 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + G+ +L NIS +R+ R G I T+P+ G I I I Sbjct: 60 DYGLAPSNTSLNNNISFLRKSLRDCGV--DDFIVTIPKIGISIEKSILIDTINNEEVITK 117 Query: 121 HT 122 + Sbjct: 118 KS 119 >UniRef50_A5L3N2 DNA-binding transcriptional activator n=2 Tax=Vibrionales RepID=A5L3N2_9GAMM Length = 492 Score = 89.1 bits (219), Expect = 1e-16, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 5/172 (2%) Query: 10 EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69 F P +++ A+ V + ++ L L + + VW GM + Sbjct: 14 LFVPNEGQILF---AERTVTIDKRLTKLLEFLCLNPGQTHTRDELINNVW--SGMILSDQ 68 Query: 70 TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAI 129 + Q + +R+ + +S I TVP+RG+K D+ + + A P+ Sbjct: 69 VVTQAVFELRKVLKQNSQQHNSYIITVPKRGYKFEADVIQSKIETDQVAEPEPSTAQPSD 128 Query: 130 KVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 + + + + +L ++ S Y L++ + P Sbjct: 129 PEQSPPADKLPQTDVSEKTKPNKRNLMIGLLLGAIVVMESGYILYSASSSTP 180 >UniRef50_D0I6A9 Putative transcriptional activator ToxR n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I6A9_VIBHO Length = 185 Score = 87.5 bits (215), Expect = 4e-16, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 68/177 (38%), Gaps = 9/177 (5%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 +++ + + F R++++ D + L + L LL E V+ +++ +VW + Sbjct: 4 NYLLGNQVIFDTLKREVLTT---DKIISLGGREAAILKLLCENANMVITKEEINDKVWGK 60 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI---HNDINIQNHVINSST 118 + V +L + IS +R+ + + I T+P+ G+ + ++ + Sbjct: 61 --VFVSETSLTKAISNLRKSLQLIDGVMCE-IKTIPKEGYMLILEGENLGLMVTEDEPPL 117 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWN 175 + + + + + N + S L+ S F + SA L + Sbjct: 118 EVKRIESKDLAMIKPPSANNRMLSSNVIGQSQHPANSVLMKPSWFFMTILSAVLLSS 174 >UniRef50_D0XFV2 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XFV2_VIBHA Length = 277 Score = 86.0 bits (211), Expect = 1e-15, Method: Composition-based stats. Identities = 42/238 (17%), Positives = 82/238 (34%), Gaps = 10/238 (4%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M+ I N+ P RKL + D V L + L+LL+E V ++ F W+ Sbjct: 1 MHRIYFANLILDPTTRKLSNSDGDD--VPLRPLPYQVLNLLIEKQGVHVTREALFESCWD 58 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 G V L IS +R+ + I TV + G+ + + +++ I + Sbjct: 59 --GSVVTDQALTNVISGLRKKLAQLNAQGVQ-IKTVSKIGYLLEVNADVK--PIKQKVEI 113 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 V++ K + +K + F I + + + + Sbjct: 114 PELQTLEIDDVDSQVKAAPKQEAESRDKAFSVAPILMAAFLLFAIASVLYFRPFAPHPDF 173 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSS 238 DY+ ++ F + D L K+ + C +Y +++S+ Sbjct: 174 LDDSDYQH-FSVSETDFYFYDQNHDELDLSALAKSLNDEVFPVC--PAIVYLRVSESA 228 >UniRef50_C4UIA8 Possible regulatory protein n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UIA8_YERRU Length = 260 Score = 86.0 bits (211), Expect = 1e-15, Method: Composition-based stats. Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 9/150 (6%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M I ++ F P K+ S+ + V L S L+LL E +PD V++ +W Sbjct: 39 MEKIYIGDVSFIP---KIRSLELNGIEVKLRNKESEVLALLCECYPDPVSRDKIENSIWT 95 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + V NTL Q IS +R D H LI T+P++G+ + + + + + Sbjct: 96 DS--YVTDNTLTQTISNLRNALN---DKKHELIITIPKKGYCLGFEPKFL-LCNDDNHSS 149 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKIL 150 + N + + G +FN ++ Sbjct: 150 LSEIKSVTNIENENAQVYLSGRFSFNYIVM 179 >UniRef50_A3UR88 Putative transcriptional activator ToxR n=3 Tax=Vibrionales RepID=A3UR88_VIBSP Length = 280 Score = 85.2 bits (209), Expect = 2e-15, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 10/134 (7%) Query: 9 IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68 I F P ++ N + ++ + +R L LLL+ P++V +QD + W E + Sbjct: 2 IRFDPIKNRIY---NDERSIKIGYRETRVLELLLKKSPEIVRKQDIISFAWGSE--FIGD 56 Query: 69 NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFK-IHNDINIQNHVINSSTDAHTHNAPP 127 +L + IS++R+GF +G + I TVP+ G++ I + I++ +T T P Sbjct: 57 TSLAKCISLLRQGFVKLG-IKETPIVTVPKVGYRLIDGCVLIESQPQIGATTPLT---PV 112 Query: 128 AIKVNAGYKESIGG 141 + ++ + S+G Sbjct: 113 SDHISLSHTSSLGN 126 >UniRef50_Q15PB9 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15PB9_PSEA6 Length = 756 Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 10/227 (4%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + I D P ++ + + + L A L+ L + DVV+Q+D +VW++ Sbjct: 5 YWIGDFFVNLPRNQ----ITHNEHTQTLPPKALAVLTYLAKHQGDVVSQEDLLNQVWKD- 59 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 V N+L + I+ +R+ F G LI T ++G+ + I ++H + D+ T Sbjct: 60 -TVVSPNSLQRCIAQLRKAFGDDG-KAQGLIKTHAKKGYSLEAAIRWEDHQKRNVGDSVT 117 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 + P +A + F+ K + + +++ A VI S LW ++ P Sbjct: 118 LDKSP-PNQHAKLGTNKVVKAGFSAKHIFVLSLFTVLVFALVISITST--LWPSSVHNPS 174 Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPW 229 + +I + K+ + C H W Sbjct: 175 PASPLLIDDIRLLTSTDNRELASAYSPDGKFIVFQRFPEVMCTSHLW 221 >UniRef50_B1J1E8 Two component transcriptional regulator, LuxR family n=3 Tax=Pseudomonas putida RepID=B1J1E8_PSEPW Length = 330 Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 7/86 (8%) Query: 25 DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84 V L A L+ L++A VV + + F+ VW G V N L IS++R+ F A Sbjct: 20 GKPVPLGGRAFEVLATLIKAKGRVVGKDELFSEVWA--GTVVEDNNLQVQISLLRKAFGA 77 Query: 85 VGDTTHSLIATVPRRGFKIHNDINIQ 110 G LI TVPRRG+++ D+ + Sbjct: 78 PG-----LIQTVPRRGYRLAVDVVLD 98 >UniRef50_C1M6R9 Predicted protein n=2 Tax=Citrobacter RepID=C1M6R9_9ENTR Length = 227 Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 43/241 (17%), Positives = 81/241 (33%), Gaps = 28/241 (11%) Query: 29 VLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDT 88 L A++ L LL+ ++ ++ + V++ G R L Q+IS +R+ + G Sbjct: 3 TLNNVATQLLLYLLQNGKEISSRDEILRNVFQHNGARATDANLNQHISFLRKAITSTGH- 61 Query: 89 THSLIATVPRRGFKI-HNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNN 147 LI T+PR GF++ INIQ ++ + + A Sbjct: 62 PAELIVTIPRIGFRMSDASINIQ-----------------QLEESQAPTRIVNVALTPRK 104 Query: 148 KILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGL 207 K + L + +A+ W N+ + C ++ + + Sbjct: 105 KKRNLWPVTITTLITGIAVLATAWLTWIPNEIAMTDAAILRTIDYEQCRVHILGNALTDT 164 Query: 208 KEFDKYKTRILDSGI--NCKKHPWLYFPLAKSSPGMI----VMACNKNYNQHEVANCLTL 261 K GI NC LY S+ ++ C N + +C++ Sbjct: 165 ITEKKALDIFKSVGINPNCSYPKDLYLNTWASNHNLVEWSFAAECGLNLGYY---HCISQ 221 Query: 262 S 262 Sbjct: 222 Y 222 >UniRef50_C2HYC0 Transcriptional activator ToxR n=1 Tax=Vibrio cholerae bv. albensis VL426 RepID=C2HYC0_VIBCH Length = 275 Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 83/211 (39%), Gaps = 7/211 (3%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 + +I+ +++F L + L+ +R L LL++ VV++ W Sbjct: 8 LIYILEGSVKFSVIDSTLTYGNKNHH---LSYTETRILELLIKNSGSVVSKIQLIEYSWT 64 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 G V +L ++IS IR+ FR + I T+PR G+++ N+ ++ +++ Sbjct: 65 --GKVVAETSLAKSISNIRKVFREC-EFHDDAIQTIPRLGYRLSLRSNVYEEKMDETSNL 121 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 AI + + I A ++ K I S+L+ Y +++ Sbjct: 122 IFLEETKAISDSLAPRAMIKYADSYLGINFKKIISYLVCFILLSASVTFLYETIHSSHSN 181 Query: 181 PFFKDYKTVA-EINGCHFNVTEDTIDGLKEF 210 DY+ ++ I + V ++ + Sbjct: 182 FIDADYEKISIHIENKKYIVIKNKNSNIPSR 212 >UniRef50_Q7BQU1 Sea17 n=1 Tax=Serratia entomophila RepID=Q7BQU1_9ENTR Length = 239 Score = 84.5 bits (207), Expect = 3e-15, Method: Composition-based stats. Identities = 47/266 (17%), Positives = 97/266 (36%), Gaps = 36/266 (13%) Query: 5 INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64 +ND + F R L ++ L+ ++R LS L+ ++ + D VW++ + Sbjct: 2 LNDLVHFNDNTRVLCR---GVQSIELSLSSARLLSRLIITPNKLIRRDDLLNDVWDKFNL 58 Query: 65 RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHN 124 + L +NIS++R+ F + + I T+P++GF + + + + + + Sbjct: 59 TPSDSNLNKNISLLRKAFTDL--RIENSIETMPKQGFMLVLTVKVLSGDL-------SEV 109 Query: 125 APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFK 184 + KV K F+ + I + IM AF + A + + Sbjct: 110 PLSSEKVEG------STVKKFHRQWFIIIFALEIMYVAFFSYIFKAAYDNH--------- 154 Query: 185 DYKTVAEINGCHFNVT-EDTIDGLKEFDKYKTRILDSGINCKK-HPWLYFPLAKSS---- 238 ++ ++ C VT I ++ F K + + C+ H +Y +K Sbjct: 155 NFSYFTQVGLCDVYVTQSAKIKSIETFIKSSSG-KNVMRRCENTHKIVYIDDSKLDVENL 213 Query: 239 -PGMIVMACNKNYNQHEVANCLTLSY 263 V C+ C + Sbjct: 214 KKETFVAVCDGT-KSSGRNECKNYVF 238 >UniRef50_A1JQP0 Membrane protein n=15 Tax=Enterobacteriaceae RepID=A1JQP0_YERE8 Length = 199 Score = 84.5 bits (207), Expect = 4e-15, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 14/179 (7%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + + + F P R L + V+LT R L LLL V ++ +VW+E+ Sbjct: 8 FKLEGTVLFSPAQRCLNGPDGS--VVILTENNLRFLQLLLNG---VTEKEQIINQVWKEQ 62 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN-----IQNHVINSS 117 V ++ Y + ++R+ F VG SLI T+PR+G + ++ + +S Sbjct: 63 RGAVSESSYYGQLYMLRKAFLQVG-LKESLIHTIPRKGVRYTGSVSKIAVCKEPQEQQNS 121 Query: 118 TDAHTHNAPPAIKVNAGYK---ESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL 173 TD A P + E+I + ++S+ ++ +S WL Sbjct: 122 TDMQQMPALPDVSQLTTLPLPIENIAPQEFPAQNKQSFLQSYRWKKLISLLAFFSFCWL 180 >UniRef50_Q1YZ13 Transcriptional activator CadC n=1 Tax=Photobacterium profundum 3TCK RepID=Q1YZ13_PHOPR Length = 509 Score = 84.5 bits (207), Expect = 4e-15, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 74/199 (37%), Gaps = 17/199 (8%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 DN F P K I + +VV+ S L L + ++ + VW G + Sbjct: 9 DNWIFIPSENKCIL---DERSVVIDNRLSNLLLFLCQHPHQTFSRDELINEVW--NGSFL 63 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN-SSTDAHTHNA 125 + Q+I +R+ ++ H I T+P+RG+K+ ++ IQ+ ++ + T NA Sbjct: 64 TDQVITQSIFELRKILKSNQRHPHGYIITIPKRGYKLDAEVEIQDDSLSTEDNNQDTENA 123 Query: 126 PPAIKVNAGYKESIGGAKNFNNKIL-----------KHIKSHLIMLSAFVIGAYSAYWLW 174 + KE++ ++ + + LI ++ A A + Sbjct: 124 HALLNTAHTNKEAVREVPQPSSAPSYQKEREAAHQRRSSRGKLIAFCCLLLVATLASLFY 183 Query: 175 NNNQPKPFFKDYKTVAEIN 193 P+ + + + Sbjct: 184 YVKTPESRATSTRKFSSLE 202 >UniRef50_Q5E5W5 Transcriptional regulatory protein n=2 Tax=Vibrio fischeri RepID=Q5E5W5_VIBF1 Length = 285 Score = 84.1 bits (206), Expect = 5e-15, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 82/243 (33%), Gaps = 14/243 (5%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M+ II N+ PE R L + V+L LLL+ V++ F WE Sbjct: 1 MHKIIIANLVLEPESRTLTNQF--GHKVMLRPLPYEVFRLLLDQQGKSVSRDQLFNVCWE 58 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 GM V L IS +RR + + I TV + G+ + + I + Sbjct: 59 --GMVVTDQALTNVISNLRRNLVQL-KAENVTIKTVSKIGYLLAIEQPITIVENTNEIAP 115 Query: 121 HTHNAPPAIKVNAGYKE---SIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177 + P+ N K+ + A ++L + F++ ++ Sbjct: 116 LKKQSEPSSVANKIKKKEAFNRKTADAILKQLLTKPSVKSVSCCFFLVAMIIVGVVYQRY 175 Query: 178 QPKPFF--KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGI-NCKKHPWLYFPL 234 P F + +N F + T + +K K+ I + C +Y + Sbjct: 176 ISIPHFLVSNNYEHFSVNNTDFYLLNKTKEKTD-IEKIKSGIESLNLAECNA--NVYIRM 232 Query: 235 AKS 237 S Sbjct: 233 YDS 235 >UniRef50_B9TBN5 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TBN5_RICCO Length = 231 Score = 83.7 bits (205), Expect = 5e-15, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 2/122 (1%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 +N +L+ + +V L+ A R L+LL +A +V ++ F + W G Sbjct: 74 TLNGRWRLDELSNELVDPA-SGASVALSPIAVRLLTLLADAPNTIVGRRQLFDQGWRRYG 132 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 + V N+L Q I +R F +G S I TVPR G+ + + + ++ Sbjct: 133 IEVCENSLNQVICALRTAFARLGPEAPS-IRTVPRIGYSLVAQVAGRADRAPAAQVVAPD 191 Query: 124 NA 125 Sbjct: 192 RE 193 >UniRef50_A4CYI6 Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 7805 RepID=A4CYI6_SYNPV Length = 209 Score = 83.7 bits (205), Expect = 6e-15, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 72/211 (34%), Gaps = 15/211 (7%) Query: 10 EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69 F P+ + ++ L+ ++ L L++ ++V+++ W G V N Sbjct: 10 IFDPQK---ATYSTSEKTSRLSKSETKILQYLIDNCGEIVSRETLLQIGWP--GKFVVPN 64 Query: 70 TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST---DAHTHNAP 126 +L +I +R+ F ++I T+ +GF I +D I++ + + D + + Sbjct: 65 SLNVSIGNLRKAFGQ----DRAIIITIKDKGFTIKDDNFIRHPIEPEAIRECDPESDDVQ 120 Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDY 186 + + + I + +++ + G W + D Sbjct: 121 YSASEEEEASDIEQEISPRQSLPTWKIVCYSLLILVILFGVALGLGSWKSPPCVTINSDL 180 Query: 187 KTVAEINGCHFNVTEDTIDGLKEFDKYKTRI 217 +I + + L D T + Sbjct: 181 TICGDI---KYLNINKLTENLPRNDATYTHV 208 >UniRef50_Q2NVH3 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NVH3_SODGM Length = 251 Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 14/174 (8%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 +I F+P+ R L L S L+LL +P+ V +F VW G Sbjct: 16 VITSCFTFYPKKRCLEL---EGTIHQLRKKESEVLALLCRKYPNPVHHSEFLDEVWG--G 70 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 V ++++ Q I +R+ + G ++I T+P+ G+++ + D Sbjct: 71 GYVTSHSIAQVIRSLRKLLKKNG---KNIILTIPKLGYRLGIEPQYDEGNEVKIFDFSQE 127 Query: 124 NAPPAIKVN------AGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171 NA + + + + + + + L++ +Y Y Sbjct: 128 NAGNSAEEDYFVSSGDRHPSTPPPRLYQTSGKVVKWFFRLLIFMLLFPASYGVY 181 >UniRef50_Q1ZVU4 Putative uncharacterized protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZVU4_PHOAS Length = 262 Score = 82.2 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 84/223 (37%), Gaps = 12/223 (5%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 + IN ++F + L ++ +LT SR L+LLLE ++V++++ T WE Sbjct: 7 NYQINH-VKFDSKKGLLS---DSCQQHLLTYTESRLLTLLLERQNEIVSKEELKTFAWE- 61 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 V ++L ++I+ IR+ +IATVPR G+++ + + Sbjct: 62 -HTVVTDSSLTKSIAKIRQSLSTY-FPNDEIIATVPRVGYRLDLEKTSFSEDKLEHEVET 119 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 + P V ++ F + L++ A + + + N + Sbjct: 120 STVLPSENNVGYQAQKL-----PFKKSFFIIKRGLLVLSIALLAYSGFNLFRKLPNDYRK 174 Query: 182 FFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINC 224 F + + +I F +K K + + NC Sbjct: 175 FLNNDYSAIDITNNGFTHRIIKPKSFIIPEKIKAILAEKKCNC 217 >UniRef50_C6D9U3 Transcriptional regulator, CadC n=5 Tax=Pectobacterium RepID=C6D9U3_PECCP Length = 261 Score = 81.8 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 89/266 (33%), Gaps = 15/266 (5%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++IN+ I F L + + + L+ P SR LSLL+E +++ E Sbjct: 1 MVYLINELIIFNEGEGTLTWIERENEAISLSFPISRLLSLLIENQRVTLSRDFLLKEALE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI-----QNHVIN 115 + + N L +S++R+ R I T+P+ G + + + Sbjct: 61 KHALSPSINNLNNYLSLLRKVLREFDLADS--IVTIPKLGIVFNVESVVSYPEADRGGGE 118 Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWN 175 T KV + ++ I + IK+ + A L+ Sbjct: 119 KETSHQVVEENVEEKVEEDVYQEKKPFSIKHHAISEPIKTQQYTRCLLIWIAIVGVILFA 178 Query: 176 NNQPKPFFKDYKTVAEING-CHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPL 234 + F + +++G C D++ D ++ K + Sbjct: 179 LDNANRFPYRHLVDVKMSGKCDLFYLYDSVGYPLPTDYENLCSENTLFFLSKK--IVISG 236 Query: 235 AKSSPGMIVMACNKNYNQHEVANCLT 260 IV++C KN + C+T Sbjct: 237 MLDKKSEIVISCKKNGS-----GCVT 257 >UniRef50_Q2S7R1 DNA-binding winged-HTH domains n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S7R1_HAHCH Length = 706 Score = 81.0 bits (198), Expect = 4e-14, Method: Composition-based stats. Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 13/173 (7%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 + I F P ++ + V L+LL+ VV ++FF +VWE Sbjct: 29 EYNIAGVWLFNPRNQTIARADGLVHQVR--AKTCDVLALLIRHHDRVVTTEEFFDQVWE- 85 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQN------HVIN 115 G V N L ++I +R F D + IAT P+RG+++ + + + Sbjct: 86 -GRFVGENVLKRSIFELRHIFE---DKSRDYIATAPKRGYRLKAAVALVRPDPPEPETMT 141 Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY 168 A AP + V+ +I A ++ LK + L + G Sbjct: 142 PPASAEAEQAPSDVTVSPAPVATIPTASWYSRLDLKRLAVGGFFLFLLIWGMT 194 >UniRef50_B2VDV6 Putative transcriptional regulatory protein n=1 Tax=Erwinia tasmaniensis RepID=B2VDV6_ERWT9 Length = 266 Score = 80.2 bits (196), Expect = 7e-14, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 96/267 (35%), Gaps = 13/267 (4%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 II DN+ +++S V+L A RC L +A V++Q+ W G Sbjct: 5 IIIDNLLMLDGRTRMLSRIPDGKGVMLPASACRCFIALAQAKEQVLSQEQLMDVGWRHSG 64 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 + V N++ I+ IRR A+ + V R G+++ I T T Sbjct: 65 VEVTDNSVRVMITKIRRALIALEVNDSVQLIAVTRSGYRL-----IVRTEQPDITRRTTS 119 Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFF 183 + P + V+ G A + + + + + L A + WL + Sbjct: 120 ASNP-LHVSTGLVSRHVSAYRAHRFLRRRLAAGAAGLVLGSCLAAAVSWLLAIKPTPINY 178 Query: 184 KDYKTVAEINGCHF----NVTEDTIDGLKEFDKYKTRILDSG--INCKKHPWLYFPLAKS 237 + N++ D ++ Y+ ++ IN + +LY + Sbjct: 179 VRWHGAETPPQTEVWVPGNISPDKQRVVQTLQLYRQYAINKNGDINPEHARYLYITTGGA 238 Query: 238 SPGMIVMACNKNYNQHEVANCLTLSYR 264 SP + ++AC NC + S++ Sbjct: 239 SPDLGLIACVAPLR-DSENNCESYSFK 264 >UniRef50_B5FHC5 Putative transcriptional regulator n=14 Tax=Salmonella enterica RepID=B5FHC5_SALDC Length = 146 Score = 79.8 bits (195), Expect = 9e-14, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 4/124 (3%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFP-DVVAQQDFFTRVWEE 61 ++IN + + +L ++ + + +CL +L +++ ++ +W E Sbjct: 4 YLINSTHTYNDKTNELKNIKTG-KMIKIAAMRIKCLEYMLNHAQQEIIYKKQLTNELWGE 62 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 + L Q + ++RR + G + +TVPR G K+ +I I N + + Sbjct: 63 RSQFISDANLTQILYLLRRDLKGFGLSQ--FFSTVPRTGIKVDANIIISNENKSCLPSSL 120 Query: 122 THNA 125 A Sbjct: 121 KKEA 124 >UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022A1_SOLUE Length = 605 Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 3/97 (3%) Query: 27 NVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVG 86 V L A L +L+E +VVA+QD + VW + V + L NISI+RR Sbjct: 1 MVALEPKAVEVLLILVEKRGEVVARQDLMSAVWPD--TFVEESNLSSNISILRRQLGTPP 58 Query: 87 DTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 D I T+P+RG++ +N + ++T + Sbjct: 59 DGG-DYIQTIPKRGYRFVAAVNQAGSELEAATAEVSE 94 >UniRef50_C9QE85 Putative uncharacterized protein n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QE85_VIBOR Length = 280 Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 39/260 (15%), Positives = 86/260 (33%), Gaps = 10/260 (3%) Query: 7 DNIEFWPEHRKLISVHNAD---LNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 I+F + + ++ V+L L LL ++++ F + W G Sbjct: 2 KAIQFSSLKLECETRTLSNGFGNKVILRPLPYEVLVFLLL-KGAPASREELFEKCWG--G 58 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 V L IS +RR F + + I T+ + G+ + ++ + + T T Sbjct: 59 AVVTDQALTNVISDLRRHFFVLNAKEIN-IQTISKVGYFLDVEVEVIEALEPVQTIEDTT 117 Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFF 183 + V ++ I + K+ +++ A + + + PF Sbjct: 118 DVELNPSVTPSHQSQEMANHAPKRDI--NFKASYLLVFALIAMIAATFIFEPFKPRSPFT 175 Query: 184 KDYKTVAEINGC-HFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMI 242 + V ++G F + + T + + + S NC ++ + PG+I Sbjct: 176 DLSQYVQLLDGSPTFYLMDGTNGSIDKAFLTEQLGKASLANCSADVYIRVFPSIYEPGVI 235 Query: 243 VMACNKNYNQHEVANCLTLS 262 M ++ Sbjct: 236 AMTVRLKSKTSAHSHVFQHF 255 >UniRef50_Q12IZ6 Transcriptional regulatory protein-like protein n=2 Tax=Shewanella RepID=Q12IZ6_SHEDO Length = 580 Score = 79.5 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 5/203 (2%) Query: 19 ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78 V + L V L + R LS+L EA P +V+Q+ +VW + + V TL Q I ++ Sbjct: 31 TLVRDDKLEVRLPWLSYRLLSVLCEAAPGIVSQEQLLEKVWPD--VVVGDETLKQRIKLL 88 Query: 79 RRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKES 138 RR T I + RG+++ + + + V + + + +S Sbjct: 89 RRALNDDAHTP-IYIEAIRGRGYRLLPQVIVTSEVTPTRMTSLDLANDTHVMPED--GKS 145 Query: 139 IGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFN 198 + L + +++ F+ + L N + + G + Sbjct: 146 YPLFWKLTSLSLAALMLIFALVALFISSGDNLAKLDENAPSSLASPGFDVELYLKGLDYY 205 Query: 199 VTEDTIDGLKEFDKYKTRILDSG 221 D L + + + + + Sbjct: 206 HRYREADNLHAIELFTSALAINP 228 >UniRef50_B8CR40 Transcriptional activator CadC n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CR40_SHEPW Length = 512 Score = 78.3 bits (191), Expect = 2e-13, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 69/191 (36%), Gaps = 19/191 (9%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + I DN F P +L+ + +++ S L L + +++ + VW + Sbjct: 6 YRI-DNWFFVPHENRLVL---DEQEILIDNRLSNLLLFLCDNPRTTLSRDEIIDHVW--K 59 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHV--------- 113 G + + Q I +R+ + I TVP+RG+K+ D+ + N V Sbjct: 60 GSILTDQVITQAIFELRKILKTNNQHLQGYIITVPKRGYKLDTDVEVVNEVKTAPTVLNA 119 Query: 114 ----INSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYS 169 + S+ + ++ A + E+ + S L ++ A + A Sbjct: 120 AHKIVESNAEQKSNFAAKEATKHKKATENEEPTTAVESAKSVRFSSSLAIVGALIAVAVL 179 Query: 170 AYWLWNNNQPK 180 + + K Sbjct: 180 VVFFNRADIGK 190 >UniRef50_A4EHZ3 Integral membrane protein-like n=1 Tax=Roseobacter sp. CCS2 RepID=A4EHZ3_9RHOB Length = 675 Score = 77.9 bits (190), Expect = 3e-13, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 8/142 (5%) Query: 10 EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69 F + + A V L +++ LSLL++ V + D + VW++ + V + Sbjct: 11 LFTYDTGLDCLLDEAGNQVSLRPQSAQVLSLLVDNIGQTVTKDDLISTVWQD--VSVTDD 68 Query: 70 TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAI 129 +L Q I+ +RR GDT ++ T P+ G+++ + + + A Sbjct: 69 SLTQCIADVRRAL---GDTDRRILKTRPKVGYQLSPTHQDTDQPETALMGGQSSGANAVS 125 Query: 130 K---VNAGYKESIGGAKNFNNK 148 + + + N+ Sbjct: 126 ALVCIQPAHPKVQLALTTIKNE 147 >UniRef50_D2T7N3 Probable regulatory protein embR n=3 Tax=Erwinia RepID=D2T7N3_ERWPY Length = 299 Score = 77.9 bits (190), Expect = 3e-13, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 13/177 (7%) Query: 4 IIND-NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 IIN +++F L+ + + L + L +L E V++++ VWE Sbjct: 6 IINHWSVDF--ASGTLLHQSSGEQR-RLGEYQLKLLRVLAENAGKAVSREELNNLVWERR 62 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 + N+L I +R G +I T+P++G+ + + + TD Sbjct: 63 --VIGNNSLPNAIHALRIALEDDG-KQQRIIRTMPKKGYILEAEFCEFITPLRPETDLAE 119 Query: 123 HNAPPA------IKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL 173 ++P V A + + + H + ++ V+ W+ Sbjct: 120 AHSPREPFGDAKPVVLAPHTPAAAPQPEHRQRPSVHPLWYWLVPLQVVVLITLLVWI 176 >UniRef50_C7BJM7 Putative uncharacterized protein n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BJM7_PHOAA Length = 178 Score = 77.9 bits (190), Expect = 3e-13, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 60/176 (34%), Gaps = 11/176 (6%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++I N+ F + S + L + + L L + +V+ + VW Sbjct: 3 DYVIGRNVFFNSLKCNISST---VQEITLGSREASLLELFCKNPNEVINKTQIHESVWGA 59 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH-----NDINIQNHVINS 116 + V +L + +S +R+ D T I T+P+ G+ ++ I+ +++ Sbjct: 60 --VIVNETSLTKAVSNLRKALSGFDDLTCE-IKTIPKEGYIFIIGEKLDNWCIKENLLPK 116 Query: 117 STDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYW 172 + V + +K ++ +I+ S F + Sbjct: 117 EVSLSFSRQDKKMDVVSDELSLQNSISPAVSKSFLNLVYIVILSSLFSSVITTGLI 172 >UniRef50_A6CY17 DNA-binding transcriptional activator n=2 Tax=Vibrio shilonii AK1 RepID=A6CY17_9VIBR Length = 529 Score = 77.9 bits (190), Expect = 3e-13, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 8/140 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 D+ F+P K + ++V+ S+ L E V ++ + VW G + Sbjct: 11 DDWVFYPYEDKFVL---HGEDIVIDNRLSKLFHFLCENPDTVFSRDELINEVW--NGSIL 65 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN--IQN-HVINSSTDAHTH 123 + Q I +R+ + G+ + I TVP+RG+K+ + I+ + +TD+ + Sbjct: 66 TDQVITQAIFELRKILKQHGNHPYGYIVTVPKRGYKLDATVEKVIETPQPVIETTDSVSE 125 Query: 124 NAPPAIKVNAGYKESIGGAK 143 +A I + Sbjct: 126 KIDVLRDESAPETTDIVLPE 145 >UniRef50_Q1IKQ5 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IKQ5_ACIBL Length = 945 Score = 76.8 bits (187), Expect = 7e-13, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 53/141 (37%), Gaps = 1/141 (0%) Query: 20 SVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIR 79 S+ +V L L LLLE ++V++++ R+W + + L I +R Sbjct: 24 SLTKGGASVRLQDQPFEVLGLLLERPGEIVSREEIRQRLWSSDTFVEFDDGLNTAIKKLR 83 Query: 80 RGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESI 139 + TVPRRG++ +++ + V ++ T + A + + + Sbjct: 84 TALGDSALNPR-FVETVPRRGYRFIAPVSVLSPVATPEPESQTEDVVIASRERSQITITQ 142 Query: 140 GGAKNFNNKILKHIKSHLIML 160 F + + + + Sbjct: 143 PHHPVFWSTVALGLAISFLAG 163 >UniRef50_A1S359 Putative transcriptional regulator, CadC n=1 Tax=Shewanella amazonensis SB2B RepID=A1S359_SHEAM Length = 729 Score = 76.4 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 5/142 (3%) Query: 15 HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74 R +I+ + +D + L + L LLE V++ + VW G +V N + + Sbjct: 17 ERCVIAKNGSDTKLELRVM--QVLVCLLERAGRPVSRDELIREVW--RGGQVSDNAINRI 72 Query: 75 ISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAG 134 I+ +R + +I TVP+ G+ + ++ + + +D + P Sbjct: 73 IAQLRSALGD-DARSQQVIQTVPKVGYLLIAEVEPLEGQVITPSDLTHSSEVPNAAAPVA 131 Query: 135 YKESIGGAKNFNNKILKHIKSH 156 + + ++ + IK Sbjct: 132 PIDIEDNQQRSSSTMSPDIKPV 153 >UniRef50_C4K826 Putative regulatory membrane protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K826_HAMD5 Length = 137 Score = 76.0 bits (185), Expect = 1e-12, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 8/123 (6%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M I N F P+ R + + + S L LL + +P+ +++++ ++W Sbjct: 1 MKNIFIGNSLFIPKTRVI---KQEGREIKIRNKESELLFLLCKKYPNHISREEIEKQIWT 57 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + V NTL Q IS +R G D H +I T+P++G+ ++ + + + Sbjct: 58 Q--TYVTDNTLTQTISNLRNGLN---DKKHEIIITIPKKGYCLNIEPKFIDDEKIKIENL 112 Query: 121 HTH 123 ++ Sbjct: 113 NSD 115 >UniRef50_A8GFV8 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568 RepID=A8GFV8_SERP5 Length = 299 Score = 76.0 bits (185), Expect = 1e-12, Method: Composition-based stats. Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 15/150 (10%) Query: 16 RKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNI 75 R L + + L + LSLL+ P++V++ + +W +G +T+ Q I Sbjct: 10 RNLDVLTPSREKFRLRWKEYQILSLLVARSPELVSRTEIIENIW--KGTYCSDSTINQTI 67 Query: 76 SIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN----------IQNHVINSSTDAHTHNA 125 IR+ +GD H+LI T+PR G+K+ N + + + N +DA+ Sbjct: 68 KSIRQ---KIGDAEHTLIRTIPRLGYKVENKAVFHFISEEDEYVADEIWNIESDANKDIQ 124 Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKS 155 + + E I +++ + S Sbjct: 125 AELSESDNKDDEIITEEIERPEEVVAPVSS 154 >UniRef50_Q12K29 Transcriptional regulatory protein-like protein n=2 Tax=Alteromonadales RepID=Q12K29_SHEDO Length = 604 Score = 75.6 bits (184), Expect = 1e-12, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 26/195 (13%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + N+ EF E L + L + + ++ L+LLLE V+++ D + VW+ Sbjct: 1 MNYRFNE-FEFDSESLLLT---KSGLTLAIRHNEAKVLALLLERADKVLSKDDILSHVWQ 56 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 V ++QNIS +R + I T P+RG++ Q + + D+ Sbjct: 57 NR--PVSEQAVFQNISHLRSIL------GNQAIKTFPKRGYQW------QLETVRVTPDS 102 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 + P V Y+ + N + L + ++M+S + A+ W Sbjct: 103 QSSTIP----VRTQYQPLPVPSHNKRPRWLYFALASMLMVS---VLAFYLPWPDQQENTH 155 Query: 181 PFFK-DYKTVAEING 194 Y + ++NG Sbjct: 156 SRISIAYIPMTQLNG 170 >UniRef50_D0X6S7 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0X6S7_VIBHA Length = 222 Score = 75.6 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 9/160 (5%) Query: 14 EHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQ 73 + + + +TT S L L+ VV++ W + N+L Sbjct: 26 QQHACELIVESGKRYNITTKESDVLKTLVTNLGKVVSKDALIRAAWGNPEIIGS-NSLPV 84 Query: 74 NISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNA 133 IS +R+ + I VPR+G+++ ++ S A + + Sbjct: 85 AISNLRKVL----EPEKIKIVNVPRQGYQLE----VECMGSGESNSEQAEEATEQVVASK 136 Query: 134 GYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL 173 + + + NKI ++ FV +S W+ Sbjct: 137 PERNTSKRIETNTNKISVICAWLSLLYVMFVASYFSFSWV 176 >UniRef50_Q3JM80 Transcriptional regulatory component of sensory transduction system n=1 Tax=Burkholderia pseudomallei 1710b RepID=Q3JM80_BURP1 Length = 151 Score = 75.2 bits (183), Expect = 2e-12, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 2/107 (1%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++I ++I+F P+ KL + D + LT+ ++R LS+ +++ + +W Sbjct: 44 RFLIANSIDFDPKTGKLHIASSPDA-IPLTSLSARLLSIFCTFPGNIIDRDIIMEILWAS 102 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108 GM V NTL + IS +R V + I+T+ R G+ D+ Sbjct: 103 RGMIVTDNTLTKAISHLRIKLN-VANKDIKFISTLNRIGYIFVADVT 148 >UniRef50_A5L7Z6 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L7Z6_9GAMM Length = 294 Score = 75.2 bits (183), Expect = 2e-12, Method: Composition-based stats. Identities = 29/150 (19%), Positives = 59/150 (39%), Gaps = 7/150 (4%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 +IND + R ++++ N + L R L L V++ + F+ W G Sbjct: 8 VINDELHINLSDRSIMNIENK-TLIKLRPKPFRVLLYLHNHNGRCVSKDELFSECW--NG 64 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 V +L IS +R+ + +G + + TV + G+ + I N + Sbjct: 65 AIVSDQSLTNTISTLRKSLKTIG-IKKTKLTTVSKAGYLLE---KISNEELPEPHLPTET 120 Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHI 153 + I+ + +I GA + + ++ I Sbjct: 121 SLTSEIQEDDTIAAAIDGATSEVSVPVEVI 150 >UniRef50_A0KFN3 Transcriptional regulatory protein, C terminal n=2 Tax=Aeromonas RepID=A0KFN3_AERHH Length = 186 Score = 75.2 bits (183), Expect = 2e-12, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 8/170 (4%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 + I + I F + + + ++ L+ + L +L + V+ + +W Sbjct: 5 NYKIAEEIFF---SAAIFRLSKGEKDIKLSNKEAELLEMLCDEAGSVIPRSKLQDALWPN 61 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 + L + I +RR + G I T+PR G+ I ++ + Sbjct: 62 QDN--TDTNLNRQILSLRRKLESFGLM--DAIDTIPRVGYIFCAPIEAAGETEEAAPNEE 117 Query: 122 THNAPPAIKVNAGYKESIGG-AKNFNNKILKHIKSHLIMLSAFVIGAYSA 170 T A P+ A + + + F+ K + L+ L++ I Y+ Sbjct: 118 TQAANPSHAPQARRQYTRRKYDRYFSPKRILLFALLLVSLTSLAIVIYNY 167 >UniRef50_Q1Z6E8 Transcriptional activator of cad operon n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z6E8_PHOPR Length = 509 Score = 74.8 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 8/143 (5%) Query: 9 IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68 I F P+ ++ ++ L +R L+ +E +VV Q RVW+ V Sbjct: 15 IIFSPDKNQITI---NGEDIHLEPLQARLLTFFIEQQGNVVNAQQIADRVWDRSH--VSD 69 Query: 69 NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPA 128 N + Q IS++R + +S+I T+P++G+ + I + + + H+ A Sbjct: 70 NLVRQVISLLRSQLQD-KTRPYSIIKTIPKQGYLFN--IEVTKNYTPQTNINHSILATEN 126 Query: 129 IKVNAGYKESIGGAKNFNNKILK 151 + I + + K Sbjct: 127 SAEDNQLAIQIESRLQPESALQK 149 >UniRef50_A6D0K2 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D0K2_9VIBR Length = 233 Score = 74.8 bits (182), Expect = 3e-12, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 73/211 (34%), Gaps = 12/211 (5%) Query: 8 NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 NI P + L + L + L L A + +Q W G V Sbjct: 6 NITLNPNNGHLA--EDGLTIAKLNSSERLILEALCNAQGHPLTKQQLLDVGWP--GKIVV 61 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN------SSTDAH 121 N+L I IR VG + TVP GF++ ++ + + + SS A+ Sbjct: 62 ANSLNVAIRNIRTALDKVGLVM--CLETVPTIGFRLDPNVILITNDVPFVSVNVSSASAN 119 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 ++A + +E + + +++ + + A ++ + KP Sbjct: 120 DNDASSSELAAQPVEECPSPNDTVATPTRFELVKKVPLMALYAALLFCALVIFYVSSIKP 179 Query: 182 FFKDYKTVAEINGCHFNVTEDTIDGLKEFDK 212 YK F++ ++T+ L + + Sbjct: 180 SMHTYKRGNTTLVGSFSLPDNTVHALSKETE 210 >UniRef50_B1KFP5 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KFP5_SHEWM Length = 725 Score = 74.4 bits (181), Expect = 3e-12, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 8/180 (4%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 + + D + P ++S N + + A + L L+ + V++ VW Sbjct: 6 RYRLADKVV-DPAQCTILSDGN---LLKVELRAMQVLLCLINHAGEPVSRDMLLDEVW-- 59 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 G V N + + I I+R + I T+P+ G+ + I + V A Sbjct: 60 SGGEVSDNAINRIIGILRNQLGDNAKSPE-FIKTLPKVGYVLIAPITLVKEVTKHEKFAT 118 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 A ++V + + F K ++M + +S Y + +N + Sbjct: 119 EVIAGAELEVEESKR-LVFKRSLFATLYQHAGKMSILMAGLLSLLLFSVYQISHNESSES 177 >UniRef50_Q1ZPU0 Putative uncharacterized protein n=7 Tax=Photobacterium RepID=Q1ZPU0_PHOAS Length = 224 Score = 74.4 bits (181), Expect = 3e-12, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 9/137 (6%) Query: 11 FWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNT 70 F P+ + D L+ ++ L L++ +++++ W ++ V N+ Sbjct: 11 FEPQK---SAYSTPDTTTKLSASETKILQYLIDNNGEIISRDKLLEIGWPDK--VVVPNS 65 Query: 71 LYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIK 130 L I+ +R+ F+ T H +I T+ GF I + IQ+ + H Sbjct: 66 LNVAIANLRKAFK----TKHEIIITIKGAGFTIAKNTFIQHQIQPEIVSDSDHITTSQNT 121 Query: 131 VNAGYKESIGGAKNFNN 147 + KE NN Sbjct: 122 TASLNKEESVTTSLDNN 138 >UniRef50_B2VID6 Putative uncharacterized protein n=1 Tax=Erwinia tasmaniensis RepID=B2VID6_ERWT9 Length = 192 Score = 74.4 bits (181), Expect = 3e-12, Method: Composition-based stats. Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 8/115 (6%) Query: 8 NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 + F P+ R L D+ V L + L+LL +P+ V+++DF VW G V Sbjct: 14 DFIFNPKTRTL---QKNDIKVQLRKKQADVLNLLCTKYPEPVSREDFLAGVW--NGGYVT 68 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 T ++ Q I +R + DT +I T+P+ G++ ++ ++ + Sbjct: 69 TQSIAQVIRSLR---LDLDDTNKKIIVTIPKLGYRFTVRPLYEDSTADNKENEDN 120 >UniRef50_Q12S47 Transcriptional regulatory protein-like protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12S47_SHEDO Length = 762 Score = 74.4 bits (181), Expect = 4e-12, Method: Composition-based stats. Identities = 36/247 (14%), Positives = 79/247 (31%), Gaps = 28/247 (11%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + I ++ + + ++ A L+ L E VV+ VW + Sbjct: 5 YSIGGFFI-DLSRNQIT---QNNQSQIIAPKALAVLTYLAENQGKVVSHDALLENVW--Q 58 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI----NIQNHVINSST 118 G V NTL ++I+ +R+ G I T ++G+ + D+ NI++ +N++ Sbjct: 59 GTVVSPNTLQRSIAQLRKALGDDGKV-QVYIKTHAKQGYSLECDVRWHDNIESPPLNAAQ 117 Query: 119 D--------------AHTHNAPPAIKVNAGYKESIGGAK--NFNNKILKHIK-SHLIMLS 161 + A + + + + + + + N K K + Sbjct: 118 ENIVDTPTMSETNALAMSEDNTQSKAQHHSHDKDQSKSATTTDNAKPSKLTVMPLFTLFG 177 Query: 162 AFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221 ++ +L K F + + + + F F +Y + Sbjct: 178 IIILAYIGYQYLMPQPPSKLSFGELRLLTTTDNKEFASIYSPDGQYVVFHRYSAVFCRNN 237 Query: 222 INCKKHP 228 I K Sbjct: 238 IWAKNTK 244 >UniRef50_B2JV11 Transcriptional regulator, winged helix family n=2 Tax=Burkholderia RepID=B2JV11_BURP8 Length = 966 Score = 74.4 bits (181), Expect = 4e-12, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 7/134 (5%) Query: 20 SVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIR 79 V V + + A L+LL+ A D+V++ + VW V N L +IS +R Sbjct: 54 DVRLDGRKVPIGSRAFDILALLIAARGDLVSKDEIMRAVWPT--TVVEKNNLQVHISALR 111 Query: 80 RGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESI 139 R F IATVP RG+++ + H + DA + + + A + + Sbjct: 112 RAFGD----ERERIATVPGRGYRLIMQAELGAHAAP-TRDAASEREATGMSLPAVSEAAR 166 Query: 140 GGAKNFNNKILKHI 153 + ++ + I Sbjct: 167 PARRPLPARVPELI 180 >UniRef50_Q47YD8 Putative transcriptional regulator n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47YD8_COLP3 Length = 712 Score = 74.4 bits (181), Expect = 4e-12, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 7/179 (3%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++ ++I +++ LI +++L L + ++ + + VW Sbjct: 1 MRYLEFNHITIDTQNQLLIR---DGESIILAPKVYDLLIFFCKNPARIITKDELMDEVWT 57 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 G V N + + + +R+ + I TVPR+G+++ + N + + Sbjct: 58 --GTLVTENAISRTLVKVRKALGD-DPKSPQFIITVPRKGYRMVTEFN-GSDKCQYNEQN 113 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179 T + N S + NK K + S + +I A S Y+ N Sbjct: 114 TTEQTSTNKENNNTITTSFSSVNSTKNKKPKTLFSLFAISCTLLIVAVSFYFSIQQNIE 172 >UniRef50_D0FT15 Conserved uncharacterized protein n=1 Tax=Erwinia pyrifoliae RepID=D0FT15_ERWPY Length = 214 Score = 74.4 bits (181), Expect = 4e-12, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 64/188 (34%), Gaps = 24/188 (12%) Query: 8 NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 + F P+ R L + + + L + L LL +P+ V+Q+DF W G V Sbjct: 14 DFTFNPKARTLKNR---EKTIQLRKKQADVLILLCAKYPEPVSQKDFLAGAWG--GGYVT 68 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH------ 121 ++ Q I +R + ++I T+P+ G++ + + V+N + Sbjct: 69 PQSIAQVIRSLRLSLDDI---NKNIIVTIPKLGYQFTAKPSDEEPVMNDHLENMTSKSRM 125 Query: 122 ----------THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171 T + I E+ G K + ++ ++ + Sbjct: 126 GENRTAYETCTEDGEKIIYSGLTINEASGVKKTHTPRKNFKLRKAFFYSMVVMLAVLLLH 185 Query: 172 WLWNNNQP 179 + P Sbjct: 186 LFVAQSAP 193 >UniRef50_P23890 Transcriptional activator cadC n=99 Tax=Enterobacteriaceae RepID=CADC_ECOLI Length = 512 Score = 74.1 bits (180), Expect = 4e-12, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 12/175 (6%) Query: 17 KLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNIS 76 + + + L L + +V+++ + VW+ V + + Q+IS Sbjct: 16 SINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS--IVTNHVVTQSIS 73 Query: 77 IIRRGFRAVGDTTHSLIATVPRRGFKI---------HNDINIQNHVINSSTDAHTHNAPP 127 +R+ + + + IATVP+RG+K+ I +A P Sbjct: 74 ELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSP 133 Query: 128 AIKVNAGYKESIGGAKNFNNK-ILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 + +N + +K +LS + A A+ + P Sbjct: 134 SHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMS 188 >UniRef50_D1RR55 Transcriptional regulator, CadC n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RR55_SEROD Length = 301 Score = 74.1 bits (180), Expect = 5e-12, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 5/94 (5%) Query: 16 RKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNI 75 R L + + L + LSLL+ P++V++ + +W +G +T+ Q I Sbjct: 10 RNLDVLTPSREKFRLRWKEYQILSLLVARSPELVSRTEIIENIW--KGTYCSDSTINQTI 67 Query: 76 SIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI 109 IR+ +GD H+LI T+PR G+K+ N Sbjct: 68 KSIRQ---KIGDVEHTLIRTIPRLGYKVENKAAF 98 >UniRef50_B2JV05 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JV05_BURP8 Length = 658 Score = 73.3 bits (178), Expect = 7e-12, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 6/103 (5%) Query: 25 DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84 V + A L LL+EA +V+++ R+W E V N L ++S +R+ Sbjct: 20 GKPVRIGNRAFDMLELLIEAQGGLVSKEAILERIWPES--VVGDNNLQVHMSALRKLLGD 77 Query: 85 VGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPP 127 + LI T+P RG+++ I H +++ A P Sbjct: 78 ----SRDLIKTIPGRGYRLVRGAAIVRHADTAASYVERQTAAP 116 >UniRef50_Q2C4S0 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C4S0_9GAMM Length = 262 Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats. Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 14/220 (6%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 N+ F L N + VL ++ L +LL ++V ++ W + V Sbjct: 8 KNVTFCSNRAVL---SNGEKQQVLNFTEAKLLEILLSKANEIVLKETLKEFAW--QHTVV 62 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI-HNDIN-IQNHVINSSTDAHTHN 124 ++L ++I+ +RR A LI T+PR G+K +D+ + N + T + Sbjct: 63 TDSSLTKSIAKLRRAL-AFFFEDEELIITIPRVGYKFVSHDVEPVANVDTSIEESLITKD 121 Query: 125 APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFK 184 YKE ++ +K+L + LI S F + L + + Sbjct: 122 DLTGNVQLTDYKEKNKFKQSVCSKVLLTLSILLIAGSLF-----NFLRLIPTKNEQVIAE 176 Query: 185 DYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINC 224 Y A +G F+ T T G++ K + NC Sbjct: 177 GYHITALTSG-GFSHTVITRKGIELDPKLSFLLSQQKCNC 215 >UniRef50_B4SI58 Transcriptional regulator domain protein n=3 Tax=Stenotrophomonas RepID=B4SI58_STRM5 Length = 774 Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 3/151 (1%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 V A + LT A L +L+ VV +++ F VW + + L Q ++ +R+ Sbjct: 30 VEGARRPLRLTPKALGVLRVLMRQPGRVVTREELFAEVWPD--TLPTNDVLTQAVTQLRK 87 Query: 81 GFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN-SSTDAHTHNAPPAIKVNAGYKESI 139 F D + I T+ + G+++ + + + V DA P +A ++ Sbjct: 88 VFANDDDNGQAYIETIAKSGYRLLVPVLVLDDVAPVVEVDAVPEVMPALAGASAIPTATV 147 Query: 140 GGAKNFNNKILKHIKSHLIMLSAFVIGAYSA 170 A + + + + L +L ++ A Sbjct: 148 LPAPSRRSGWRQLRRQLLWVLGVLMLAALVV 178 >UniRef50_C5EUU3 Two-component response regulator n=5 Tax=Bacteria RepID=C5EUU3_9FIRM Length = 223 Score = 73.3 bits (178), Expect = 9e-12, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 5/84 (5%) Query: 24 ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83 + V L+ P + L +LL+ V ++ +VW+ G V NTL I +R Sbjct: 145 GNEEVTLSQPEYQVLLVLLQNKGRTVPREMLLEQVWDSNGNYVNNNTLTVTIKRLRGKLH 204 Query: 84 AVGDTTHSLIATVPRRGFKIHNDI 107 S + T+ G+++ + + Sbjct: 205 Q-----PSCLKTIRSFGYRMEDSV 223 >UniRef50_B1KK09 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KK09_SHEWM Length = 711 Score = 72.9 bits (177), Expect = 9e-12, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%) Query: 37 CLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATV 96 L LL++ + V++ +W V N++ Q I+ +R+ + T I TV Sbjct: 39 LLKLLIKHHGEAVSRNLIMDEIW--HDTIVSDNSVSQAITQLRKSLQD-DKGTPRFIRTV 95 Query: 97 PRRGFKIHNDINIQNHVIN 115 PR G+++ I + Sbjct: 96 PRVGYQLIATIEEVKEPES 114 >UniRef50_Q2SHD7 Probable transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SHD7_HAHCH Length = 487 Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 2/81 (2%) Query: 29 VLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDT 88 L+ + L L E V+++ +VW E V L I +R+ F + Sbjct: 31 QLSDKVCKVLLALAENPGRTVSRETLIQKVWNE-NEYVGEQALNTAIWQLRKAFNDSSEA 89 Query: 89 THSLIATVPRRGFKIHNDINI 109 I T+P++G+++ ++++ Sbjct: 90 PE-YIETIPKKGYRLLKEVSV 109 >UniRef50_A6U8S7 Transcriptional regulator, winged helix family n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6U8S7_SINMW Length = 922 Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 5/136 (3%) Query: 8 NIEFWPEHRKLISVHNADLNVVL--TTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65 F P + + V L A R L L+E +V+Q++ W G+ Sbjct: 5 RFTFGPFELDPLRLELRRDGVKLRVGAKACRLLLALVERPGHIVSQKELLAAAW--SGLN 62 Query: 66 VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125 V L +I +R+ V + + I TVPR G+ +++ + Sbjct: 63 VEDVNLRVHIVALRKALSGVANGAFN-ITTVPREGYVFAGPVSVSAAPAIEMPASPPARV 121 Query: 126 PPAIKVNAGYKESIGG 141 P + G +E++ Sbjct: 122 PRQLSTLFGRREALAN 137 >UniRef50_A5VGJ6 Transcriptional regulator, CadC n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VGJ6_SPHWW Length = 382 Score = 72.9 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 7/127 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 PE R+L+ + V L L+LL+ +V + F + VW++ + V Sbjct: 9 GQFVLDPEDRRLLR---DGVPVELNARYLDALALLVRNAGSLVGKDRFLSEVWKD--VPV 63 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126 L Q I ++R+ H I TVP+ G++ +++ + + DA H P Sbjct: 64 TDEALTQCIRLLRQRLGDDASRPH-FIETVPKHGYRFIAEVDWRESSAPAE-DAAPHTLP 121 Query: 127 PAIKVNA 133 P+ +A Sbjct: 122 PSAAPSA 128 >UniRef50_Q89V41 Bll1217 protein n=2 Tax=Bradyrhizobium japonicum RepID=Q89V41_BRAJA Length = 516 Score = 72.5 bits (176), Expect = 1e-11, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 7/107 (6%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + +N+ L + A + V L L L+ VV++ D +++W Sbjct: 1 MRFCFENNVL----DGDLRELTCAGVAVPLQPQVFDLLLYLVAQRARVVSKDDLISQIWS 56 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI 107 + V + L I+ R+ G T LI T+PR+GF+ ++ Sbjct: 57 DR--IVSDSALNSRINAARKALGDDGATQR-LIKTIPRKGFRFIGEV 100 >UniRef50_A8T8X6 Putative transcriptional regulator ToxR n=3 Tax=Vibrionales RepID=A8T8X6_9VIBR Length = 285 Score = 72.5 bits (176), Expect = 1e-11, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 73/203 (35%), Gaps = 17/203 (8%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 MY I NI P+H + + ++ + + +L E + +++ TR W Sbjct: 1 MYKI--KNILIHPDHPLVTDLTTSEEK-RIGYHDHLVILMLCENAGKITTKEELLTRAWP 57 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND-----------INI 109 G V +L Q+IS IR G T L TV + G+K+ +D + + Sbjct: 58 --GKHVSEGSLTQSISTIRNLIEDDGKTQKHL-KTVAKIGYKLESDAVSLQGKVDDGLEM 114 Query: 110 QNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYS 169 + + + T K + + K ++H+ M + Sbjct: 115 ETIPLVDAPAPDTETLESIKIEEQCSKVANPKVTIPDQNHFKFNRNHIYMAIGCFFVVVA 174 Query: 170 AYWLWNNNQPKPFFKDYKTVAEI 192 + + Q +P + + +A++ Sbjct: 175 VIFPFYLTQREPDYSGWLHLAKM 197 >UniRef50_B5R4U2 Possible transmembrane regulator n=37 Tax=Enterobacteriaceae RepID=B5R4U2_SALEP Length = 254 Score = 72.5 bits (176), Expect = 1e-11, Method: Composition-based stats. Identities = 42/263 (15%), Positives = 88/263 (33%), Gaps = 26/263 (9%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++++ + F L + + + ++ + L + + ++D VWE Sbjct: 16 FLLDKRVVFDSTKMTL---SHGNEIIRISEAETHLLLAF---WHGLYKKEDIIHLVWENR 69 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 G V ++ Y+ I+ +R F ++G I T PR G + I Sbjct: 70 GGCVSESSYYKLINQMRNDFSSIGLQPSD-IVTRPRVGVSLSVAI-------------EP 115 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 ++KV+ + + KI +H ++ + + Y + ++ Sbjct: 116 IKKITSLKVSDENVKGPSTREKIFYKIKRHSVFVVLTGAILLALLYGVFTIYKAPVRNSP 175 Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMI 242 + + E N T++ L E + L I + LY P M Sbjct: 176 DSFFTYLGEYNDYAIYKTKEDKVTLSEV-VFAFNSLKIKIYRQNGRHLY---YIREPNMN 231 Query: 243 VM-ACNKNYNQHEVANCLTLSYR 264 + C + V C+T+ R Sbjct: 232 IFLQCLNPV-EMAVPKCITVKER 253 >UniRef50_B7VJ79 Transcriptional regulator n=6 Tax=Vibrionaceae RepID=B7VJ79_VIBSL Length = 462 Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 26/173 (15%) Query: 9 IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68 I F+P+ +L+ + L +R LS ++ VV+ Q VW+ +V Sbjct: 15 ISFYPDKNQLVI---DSEEIHLEPLQARLLSYFIDKRGQVVSTQQIAADVWQR--TQVSD 69 Query: 69 NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPA 128 N + Q IS++R + + +I T+P++G+ I+ + T PP Sbjct: 70 NLVRQVISLLRSQLQD-KVRPYRIIQTIPKQGYLFD----IEIIQPSVETTPVVEIPPPE 124 Query: 129 IKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 IKV + K K+ ++ +A A W W + Sbjct: 125 IKVVSKPKN----------------KTIALITTAVFSIGLIATWAWQIDVSTN 161 >UniRef50_A3CKZ7 Two-component response transcriptional regulator (CheY-like receiver and winged-helix DNA-binding domains), putative n=7 Tax=Firmicutes RepID=A3CKZ7_STRSV Length = 226 Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%) Query: 24 ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83 + +V L+ L LLL + +++ F +VWEE NTL ++S +R+ Sbjct: 146 GEKSVRLSKKEYHILQLLLRHPKKIYTKEELFEQVWEE-SYLPGDNTLNTHLSNLRKKLA 204 Query: 84 AVGDTTHSLIATVPRRGFKIHND 106 + D T I TV G ++ D Sbjct: 205 QL-DPTEEYIETVWGLGVRLKED 226 >UniRef50_Q1Z6V5 Putative uncharacterized protein n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z6V5_PHOPR Length = 285 Score = 71.8 bits (174), Expect = 2e-11, Method: Composition-based stats. Identities = 33/250 (13%), Positives = 76/250 (30%), Gaps = 29/250 (11%) Query: 11 FWPEHRKLISVHNADLNVV---LTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 F L+ + + L+ + LS L++ +V + VWEE+ + Sbjct: 10 FNATKNTLVHNGGSSGEIKTFSLSPKEADVLSYLIDNASKLVTKDALVEHVWEEQ--ELN 67 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPP 127 ++ +S +R FR + LI T+ ++G+ ++ + + Sbjct: 68 EQSILNVMSKLRSIFRQFDEG--ELIKTIRKKGYVFEVSPEDVQYIRIELAKENPVLSES 125 Query: 128 AIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFF---- 183 I + +++ S L +L+ + Y + N + Sbjct: 126 EIAEAPQ--------PVYQYLFSRYLWSVLFILTIIFLVIGGYYQYLSKNNDYDAYEINQ 177 Query: 184 KDYKTVAEINGCHFNVTEDTIDG----------LKEFDKYKTRILDSGINCKKHPWLYFP 233 KD + +G V + G + +F +Y + + +Y Sbjct: 178 KDIIYINNPDGEFVKVIFSSRGGSLTKRQYKDVIDKFSQYYHAVQTLPPESITYKTVYVD 237 Query: 234 LAKSSPGMIV 243 + Sbjct: 238 VFHIHKTFFA 247 >UniRef50_Q1MK68 Putative adenylate cyclase n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MK68_RHIL3 Length = 522 Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 7/101 (6%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 I+ND + E L + L A L L++ +V++ + VW G Sbjct: 25 ILNDKVVVDLEGETL--RLENGDAIALRPQAFAVLRHLVQNANRLVSKAELLEAVWG--G 80 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104 V ++L Q I IRR GD ++++ATV RRG+++ Sbjct: 81 AAVTDDSLVQCIHEIRRAL---GDERYAVLATVSRRGYRLS 118 >UniRef50_B6EJP4 Putative uncharacterized protein n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EJP4_ALISL Length = 302 Score = 71.8 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 46/261 (17%), Positives = 92/261 (35%), Gaps = 33/261 (12%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M I N+ P R+L +NAD ++L +LLLE + + + + F WE Sbjct: 1 MQKITIVNLVLEPATRRLS--NNADDAIILRPLPYNVFTLLLEQKGNCIDRDELFDVCWE 58 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS--- 117 G V L IS +RR + + I TV + G+ + D + + Sbjct: 59 --GAIVTDQALTNVISGLRRNLIQL-EAEGIAIKTVSKVGYLLTVDETVVMQPVIEPKII 115 Query: 118 TDAHTHNAPPAIKVNAGYKE---------------SIGGAKNFNNKILKHIKSHL--IML 160 + P A+ V+ ++ + + +++ K L ++ Sbjct: 116 PPVIDNIEPKAVLVSPQAEDPLRVHDNVAISNDVQVLPTTEVGRSRVRLLTKPSLKSALI 175 Query: 161 SAFVIGAYSAYWLWNNNQPKPFF---KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRI 217 + + +A + P+F ++Y EI F + +T G + ++ + Sbjct: 176 AFCLCSLIAAVCWYEKASSVPYFLVKENYNH-FEIKNTDFYILNNT-RGKDNIEAIQSGL 233 Query: 218 LDSGI-NCKKHPWLYFPLAKS 237 + C +Y + S Sbjct: 234 ESLNLVECNAE--IYIRMYDS 252 >UniRef50_B7VRN4 Putative uncharacterized protein n=2 Tax=Vibrio splendidus RepID=B7VRN4_VIBSL Length = 265 Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 89/256 (34%), Gaps = 23/256 (8%) Query: 10 EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69 P R+ ++ N + L + + L L + V++ W G V Sbjct: 13 ILNPTLRRQLTNKNDGTSKKLHSTDCKILETLCKHKGRTVSKSALTNAAWP--GRVVSKA 70 Query: 70 TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAI 129 +L Q+I+ +R G ++I TVP+ G+ + D+ I ++ + + + P Sbjct: 71 SLTQSIAHLRIALGDNGR-EQNIIKTVPKHGYSLVEDLVEIEIPIINTQNNQSTDGPTTT 129 Query: 130 KV--NAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYK 187 + KE + K+F N + ++L + Y+ + + +DY Sbjct: 130 QELLKIEVKEQVFFLKHFQN--FTLLVLSCLLLLSISWLTQLIYYNSTTERIEWGQRDYL 187 Query: 188 TVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACN 247 G + T + D +K LY +P ++C Sbjct: 188 ------GVTYFFTNNQNG----EDHFKAFKGKYT---NNLRMLYLS---DNPETFYISCT 231 Query: 248 KNYNQHEVANCLTLSY 263 N+ + N + +S+ Sbjct: 232 YQLNRSHMRNTMNMSF 247 >UniRef50_B3PJR7 Putative Transcriptional regulator CadC n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJR7_CELJU Length = 499 Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 9/148 (6%) Query: 20 SVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIR 79 S+ + D V L L + ++ +V+ ++ +W +G V ++L IS +R Sbjct: 34 SLSSGDQRVELEHRLVALLLMFIDHPGEVLEKERILATIW--QGKVVNDDSLAVAISHLR 91 Query: 80 RGFRAVGDTTHS--LIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKE 137 + GD S I T+P G++ + + GY Sbjct: 92 KAL---GDNPRSPRYIKTIPGVGYQFIASAAPVEEAPATPAPVPEAAPLNPVIAERGYPH 148 Query: 138 SIGGAKNFNNKILKHIKSHLIMLSAFVI 165 + + + L++L+A+ Sbjct: 149 RR--FPRSPGLWIPILLACLVLLTAWYA 174 >UniRef50_A8AKG2 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=A8AKG2_CITK8 Length = 317 Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats. Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 24/192 (12%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 Y+ +N+ + P L L + L L++ + +++ T VWE Sbjct: 5 YYSVNNWLVDIPSGSILHL--TTGERKRLGEYQLKLLETLMQDAGKIFTREELTTLVWER 62 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND----INIQNHVINSS 117 + N+L I +R G +I T+P++G+ + D I + + Sbjct: 63 R--VIGNNSLPNAIHALRTALEDDG-KKQKIIKTIPKKGYLLEPDYCCFIEKEESEVRDP 119 Query: 118 TDAH---THNAPPAIK------------VNAGYKESIGGAKNFNNKILKHIKSHLIMLSA 162 + H NAP + V + + + +K + Sbjct: 120 EENHLPLEENAPSDLAGEYEVVDETSLPVAEQANDIVRVTPPATTRPVKKSIHWTTVFLL 179 Query: 163 FVIGAYSAYWLW 174 + A + Sbjct: 180 LALTAIGSILFT 191 >UniRef50_A3UTR1 Transcriptional regulator CadC n=1 Tax=Vibrio splendidus 12B01 RepID=A3UTR1_VIBSP Length = 652 Score = 71.4 bits (173), Expect = 3e-11, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 5/98 (5%) Query: 10 EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69 F P+ KLI D +V++ S+ L+ + V ++ + VW G + Sbjct: 14 LFIPDEDKLIM---NDEDVIIDNRLSKLLNFFCQNPKIVFSRDELINEVW--NGSILTDQ 68 Query: 70 TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI 107 + Q I +R+ +A + I TVP+RG+K+ D+ Sbjct: 69 VITQAIFELRKILKAAERHSMGHIITVPKRGYKLDVDV 106 >UniRef50_Q988M4 Mll6677 protein n=1 Tax=Mesorhizobium loti RepID=Q988M4_RHILO Length = 168 Score = 71.0 bits (172), Expect = 4e-11, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%) Query: 19 ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78 + D V L + A L LLE ++V++Q+ RVW + + V L +IS + Sbjct: 41 FLLLEGDKPVPLGSRALGILIALLERPGELVSKQELMARVWPD--VFVVPTNLTVHISAL 98 Query: 79 RRGFRAVGDTTHSLIATVPRRGFKIHNDI 107 RR R G + I +P RG++ + Sbjct: 99 RRVLRD-GRDGNRFIINIPGRGYQFVASV 126 >UniRef50_D2M1X4 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2M1X4_BACS4 Length = 225 Score = 71.0 bits (172), Expect = 4e-11, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 5/97 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 DN+ F E + + D ++LT SR L++L+ +VV++ +W++E V Sbjct: 133 DNLVFHIEKQVVFC---GDSEILLTKNESRILAVLIRNRGNVVSRTRLMKALWDDESF-V 188 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103 NTL N++ +R+ ++ + I TV G+++ Sbjct: 189 DENTLTVNVNRLRKKLASL-PSDDDFIKTVKGEGYRL 224 >UniRef50_A4YSP3 Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YSP3_BRASO Length = 1015 Score = 71.0 bits (172), Expect = 4e-11, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 50/116 (43%), Gaps = 5/116 (4%) Query: 7 DNIEFWP--EHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64 F P ++ + + ++L L L+E ++V +++ VW + + Sbjct: 4 KTFVFGPFQLDQQNALLRRSGERILLAPKPFGVLVHLVERAGELVTKEELLNAVWSD--V 61 Query: 65 RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 V ++L I+ +R + I TVPRRG++ + I +H+ + + D+ Sbjct: 62 HVSESSLSVTINALRTALDDNKQSPR-YIETVPRRGYRFIAAVEIAHHLADPARDS 116 >UniRef50_Q1IIR6 Transcriptional regulatory protein-like n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIR6_ACIBL Length = 469 Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 6/186 (3%) Query: 1 MYWIIN-DNIEFWPEHRKLISVH--NADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTR 57 M +I + + F P L + V L L LL+ ++V + + R Sbjct: 1 MTDLIGPNRLRFGPYEADLHTRELWKFGTRVKLVGQPFDILELLISRPGELVTRDELRER 60 Query: 58 VWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN--IQNHVIN 115 +W +E + L ++ +R D I T+PRRG++ + + ++ + Sbjct: 61 LWPKETFVDFNHGLNAAVNKLRDVLCDSADDPK-FIETLPRRGYRFISKVERGVEEPIPV 119 Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWN 175 + T T P A A + + S V+ A+ A+ + Sbjct: 120 AETSPPTPLVVPTPAELAPEPRYESPAITVERSLGRTKWSWGAAALLMVVIAFIAFLAIS 179 Query: 176 NNQPKP 181 +P Sbjct: 180 KISREP 185 >UniRef50_UPI00016A9165 transcriptional regulator, putative n=2 Tax=Burkholderia oklahomensis RepID=UPI00016A9165 Length = 190 Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 75/182 (41%), Gaps = 17/182 (9%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++I D + F H +S+ +A LT S L ++L ++A+ + VW + Sbjct: 15 RYLIEDRVMFDSYH---MSLSHAGRETELTANESALLEMVL---SGMIAKAEVIKHVWGD 68 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN-DINIQNHVINSSTDA 120 +G+ V ++ +Q + +R + +LI T+PR+G K + + + ++ A Sbjct: 69 KGVIVTDSSYHQLVRSLRTRLEE-HQLSGALIKTLPRQGLKFMGFAVRLADDRQSADAGA 127 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFN---------NKILKHIKSHLIMLSAFVIGAYSAY 171 H ++AG + + ++L+H + L+++ + Y Sbjct: 128 DAHVPVDHSALDAGVPFQLEPEPPLHATDRSPTGLQRLLRHGERILLLVITLWAAMLTWY 187 Query: 172 WL 173 + Sbjct: 188 LV 189 >UniRef50_Q2C5Y8 Putative uncharacterized protein n=2 Tax=Photobacterium RepID=Q2C5Y8_9GAMM Length = 292 Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 13/247 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 ++ + R L H+ T S LLL VA++ ++ W + V Sbjct: 13 GSVTYDSSTRTLT--HDNGQTEYFTPRVSDVFLLLLAHQGKCVAKEFLLSQCWGD--TIV 68 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN----IQNHVINSSTDAHT 122 L IS +R+ F I TV + G+ + ++ + Sbjct: 69 SEQALTNVISKLRKVFAK-HALEMITITTVSKSGYLLEVKMDDSCVVDEEKKQVKQQPER 127 Query: 123 HNAPPAIKVNAGYKESIGG-AKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 P++ + K + K+ + IL +++ +I A+ Y++ + P Sbjct: 128 KTIKPSLLSDDIIKVNENDITKSVESNILCRKSVSYLLIILIIITAFLIYYINSVINTTP 187 Query: 182 FFKD---YKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSS 238 +F D Y I E + + K C + + +F Sbjct: 188 YFIDTNYYIHEINIGSNKVYFNEVDDYDVDKELFIKGITKSLSSVCHSNIYAHFYYNTRI 247 Query: 239 PGMIVMA 245 + Sbjct: 248 ANNSSIV 254 >UniRef50_C3NSU2 Transcriptional activator of cad operon n=39 Tax=Vibrio RepID=C3NSU2_VIBCJ Length = 519 Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 11/152 (7%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + IND + + KL D V L L E +V +++ VW+ Sbjct: 6 FQINDWVLCI-DENKLYR---QDREVSAEPRLINLLHFLAEHAGEVFGREELIQHVWD-- 59 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQN-----HVINSS 117 G V + Q+I +R+ R + S + TVP+RG+K+ ++ + S Sbjct: 60 GAIVTDQVVTQSIFELRKLLRDGREENLSYVVTVPKRGYKLVANVQRLDGNPYVSRQEES 119 Query: 118 TDAHTHNAPPAIKVNAGYKESIGGAKNFNNKI 149 T + A V E + A + Sbjct: 120 TASDVCLADDIDDVEDAVPEIVFPAGPLTRAV 151 >UniRef50_Q7MF28 Putative uncharacterized protein VVA0492 n=1 Tax=Vibrio vulnificus YJ016 RepID=Q7MF28_VIBVY Length = 227 Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 16/167 (9%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + I D I + P + N L + L L+++FP+V+++ +W++ Sbjct: 11 YKIGD-IYYSPTSAVI---DNLGELSRLRAREANLLHELIKSFPEVLSRSSIEQTLWKDS 66 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ----NHVINSST 118 T+ Q + +R + V +LI T+P++G+ + ++ Sbjct: 67 --YATDATINQTVKALRFTLQDV---ERTLIRTIPKQGYSLAIAPVLEENYGTKPSPEPI 121 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVI 165 H P S + ++ + S L+ + F+ Sbjct: 122 KIHVSTPPDDSAAKKRAPISR---RYLVASVVIALSSFLLAANGFLA 165 >UniRef50_A5P8P2 Transcription activator ToxR n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P8P2_9SPHN Length = 342 Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 + V L + L LL +++++ F VW G+ V L Q I +RR Sbjct: 22 LLRGGEAVELGSRYFDALVLLATHPGELISKTRFMDDVW--RGIPVTDEALTQAIRTLRR 79 Query: 81 GFRAVGDTTHSLIATVPRRGFKIHNDIN 108 I TVP+ G++ +++ Sbjct: 80 ALGDEASAPR-YIETVPKHGYRFIAELD 106 >UniRef50_A5KUS7 DNA-binding transcriptional activator n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KUS7_9GAMM Length = 615 Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 8/141 (5%) Query: 10 EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69 F P+ KLI + N D V++ S+ L + V ++ + VW G + Sbjct: 14 LFIPDEDKLI-MDNED--VIIDNRLSKLLDFFCQNPNIVFSRDELINEVW--NGSILTDQ 68 Query: 70 TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---IQNHVINSSTDAHTHNAP 126 + Q I +R+ ++ + I TVP+RG+K ++ + I ++T + Sbjct: 69 VITQAIFELRKTLKSAERHSMGYIITVPKRGYKFDVEVKKTVLVPPPIVTNTVSLADTVS 128 Query: 127 PAIKVNAGYKESIGGAKNFNN 147 V+ + S + N + Sbjct: 129 YDETVSQEQEASPVSSPNSES 149 >UniRef50_A6F962 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6F962_9GAMM Length = 305 Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats. Identities = 47/275 (17%), Positives = 98/275 (35%), Gaps = 29/275 (10%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 +I PE R + + + + V + R L LL+ +++ + F W +G V Sbjct: 13 QHISIDPEMRAITCLL-SSITVNMRPLPFRVLMHLLKNQDKCISRDELFEECW--QGAVV 69 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTD------- 119 +L IS IR + + ++ I T+ ++G+ + +N + N + D Sbjct: 70 SEQSLTNTISYIRNKIKKL-ESNELKIKTISKKGYSLVITLNHELPENNHNGDLKDRAEE 128 Query: 120 ----------AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSH-LIMLSAFVIGAY 168 ++P + G+ + + N +K + + ++ + Sbjct: 129 SGETQELDKVIELDDSPGDSDKDNGFNRILSENEKINLPAVKGVYIRGMWFFVNLMLIST 188 Query: 169 SAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGIN-CKKH 227 + + NN+ F D K + +V DGL +++ + S +N C + Sbjct: 189 LIFLIAKNNKGNASFMDEKNYQRYELGNIDVYISDPDGLLVEGEFRKELDGSNLNSCDIN 248 Query: 228 PWLYF-----PLAKSSPGMIVMACNKNYNQHEVAN 257 +Y P K + M KN + N Sbjct: 249 K-VYIRVYSSPYNKDNIAMSAFIITKNSESQNIIN 282 >UniRef50_Q21GQ2 Transcriptional regulatory protein-like protein n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21GQ2_SACD2 Length = 425 Score = 70.6 bits (171), Expect = 5e-11, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 18/172 (10%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + ND +E + ++ A L V + + L+E +V++ + F ++W+ Sbjct: 1 MSFHFND-VEIDTKQYRITC---AGLTVSVEPKVFDIIVYLIENRNRLVSRDELFEKIWD 56 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 V TL +I R+ G+ H+ I TV RG++ ++++ Sbjct: 57 ARA--VSDTTLSNHIKSARKALGDDGEQQHT-IKTVRGRGYQFIAEVSVSALT------- 106 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYW 172 P ++ E ++ N K + LI V+ + Sbjct: 107 ----DEPIAASSSAPSERSAPVQSTNRFQPKATIAFLIFGCLCVLTLIGYLY 154 >UniRef50_A7MRS6 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC BAA-1116 RepID=A7MRS6_VIBHB Length = 253 Score = 70.2 bits (170), Expect = 6e-11, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 7/121 (5%) Query: 2 YWIINDNIEFWPEHRKLISVH-NADLNVV---LTTPASRCLSLLLEAFPDVVAQQDFFTR 57 ++I+D I F P + + N D+ +V + A L L+++ ++ ++ Sbjct: 4 KYLIDDCIVFEPLDSLIYTAKPNKDVKIVKYDIGDNAKDILLELIDSDG-CMSAEELLEA 62 Query: 58 VWEE-EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS 116 VW + + V ++ Q +S +R+ + V +I TVP+RG+ + + + + Sbjct: 63 VWRKKRNIEVDITSVRQAVSKLRKSLKLVA-PEVDVIKTVPKRGYVLDVHVELFKDDRSD 121 Query: 117 S 117 S Sbjct: 122 S 122 >UniRef50_C0Q6W1 Possible transmembrane regulator n=32 Tax=Enterobacteriaceae RepID=C0Q6W1_SALPC Length = 259 Score = 69.8 bits (169), Expect = 8e-11, Method: Composition-based stats. Identities = 37/267 (13%), Positives = 76/267 (28%), Gaps = 29/267 (10%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++I+ + E L A ++ ++ SLL+ + + + D VW Sbjct: 17 NYLIDKRVILDCERMTLSC---AGESITISESER---SLLIAFYEGLFKKDDLINYVWGR 70 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 +G+ V + Y+ I+ +R F +G S + T PR G + I + Sbjct: 71 KGVVVSDASYYKLINQLRGSFDKIGLKGAS-VVTRPRVGVLLSVSIEPLSDEAQDMPLPA 129 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 + I N+ +L F+I + Sbjct: 130 VAETELSTVEVRHDDTIIPPIPGAVNRKDWLYFCLAALLMFFMI-------YKVKGENID 182 Query: 182 FFKDYKTVAEINGCHFNVTEDT----IDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKS 237 +F +G F D ++ + + I + +Y Sbjct: 183 YF---TLNGSYDGYTFYSVGHDKTHLTDIVEAYSEMSNEIHK-----QNGKIIY---YIR 231 Query: 238 SPGMIVMACNKNYNQHEVANCLTLSYR 264 + N C+++ R Sbjct: 232 VSNTNIFVQCLNQLDIAEPKCISIKER 258 >UniRef50_A8SVV6 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SVV6_9FIRM Length = 228 Score = 69.8 bits (169), Expect = 9e-11, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%) Query: 24 ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83 +D + L+ R L LL++ V+ + ++W++ V NTL +I +R+ Sbjct: 147 SDEPIKLSVTEYRILELLIKNKGRVLTRDMIIQKIWDDNENYVDENTLNVHIRRLRQKIE 206 Query: 84 AVGDTTHSLIATVPRRGFKIHN 105 + TV G+ Sbjct: 207 K-DAGNPEYVITVFGIGYTFGE 227 >UniRef50_A4FNN5 Response regulator, two-component system n=12 Tax=Actinomycetales RepID=A4FNN5_SACEN Length = 237 Score = 69.8 bits (169), Expect = 9e-11, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query: 25 DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84 D + L L +L++ VV +++ VW E + TL +IS +RR Sbjct: 156 DHEIQLANKEFELLRVLMQHAGQVVTREEILEEVWPEPSRKGSK-TLDMHISWLRRKLGD 214 Query: 85 V-GDTTHSLIATVPRRGFKIHND 106 G IATV GF+ + D Sbjct: 215 SNGRFDDQRIATVRGVGFRFNAD 237 >UniRef50_Q1IIZ5 Transcriptional regulatory protein-like n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIZ5_ACIBL Length = 717 Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 5/133 (3%) Query: 36 RCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIAT 95 + L L +V++++ VW + V + L + IS IRR +I T Sbjct: 34 QVLVELAAHSDEVLSKEHLIHAVWSD--TFVSDDVLTRCISEIRRVLDDDARAPK-IIQT 90 Query: 96 VPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKS 155 +P+ G+++ + + ++ A + A+ + I + Sbjct: 91 IPKSGYRLIAPVVFDKAAPPKNGSSNGSTATVEAATVETPP--LKTAETPRKNLAPWIVA 148 Query: 156 HLIMLSAFVIGAY 168 ++ A V A Sbjct: 149 VGVLAIAVVYFAI 161 >UniRef50_A4SQG5 Transcriptional activator CadC n=2 Tax=Aeromonas RepID=A4SQG5_AERS4 Length = 511 Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 43/138 (31%), Gaps = 8/138 (5%) Query: 24 ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83 D V L L L V + VW+ G V + Q+I +R+ + Sbjct: 23 PDREVYLEPRLVNLLRFLACHTGTVFGRDALIKEVWD--GAEVTDQVVTQSIFELRKILK 80 Query: 84 AVGDTTHSLIATVPRRGFKIHNDI---NIQNHVINSSTDAHTHNAPPAIKVNAGYKES-- 138 I TVP+RG+K+ + + + ++ N + + Sbjct: 81 DGRFDATDYIVTVPKRGYKLVASVRPLQVVSLLMADEQPVPAVNPTLSDLSPPATADDDD 140 Query: 139 -IGGAKNFNNKILKHIKS 155 + A F L S Sbjct: 141 ALPNAAPFPAGPLTRAIS 158 >UniRef50_Q1IHU2 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IHU2_ACIBL Length = 323 Score = 69.8 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 55/148 (37%), Gaps = 7/148 (4%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 + + L + L+LLL+ VV +++ ++W + ++L I+ +R Sbjct: 64 LRKNGAKLKLQEQPFQVLALLLDRAGQVVTREEIQQKLWPADTFVDFDHSLNTAINKLRD 123 Query: 81 GFRAVGDTTHSLIATVPRRGFKIHNDIN------IQNHVINSSTDAHTHNAPPAIKVNAG 134 I T+PRRG++ + I + S+T++ + + Sbjct: 124 VLGDTASNPR-FIETLPRRGYRFIAPVEWNEPSVIPSGAAPSATESKDPSRQTEPSIATI 182 Query: 135 YKESIGGAKNFNNKILKHIKSHLIMLSA 162 + + A + ++L + ++ Sbjct: 183 AEPELPQADHRITRLLFGGLQLMYLIFY 210 >UniRef50_C5B7S6 Transcriptional activator CadC n=2 Tax=Enterobacteriaceae RepID=C5B7S6_EDWI9 Length = 548 Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%) Query: 37 CLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATV 96 LS V+++ + VW+ V + + Q IS +R+ + I TV Sbjct: 36 MLSYFAHHPDMVLSRDELIDNVWKRN--IVTNHVVTQCISELRKYLKDGRPEAPEYIVTV 93 Query: 97 PRRGFKIHNDIN 108 P+RG+K+ + Sbjct: 94 PKRGYKLVESVI 105 >UniRef50_C9QI52 Cholera toxin transcriptional activator n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QI52_VIBOR Length = 229 Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 37/223 (16%), Positives = 78/223 (34%), Gaps = 14/223 (6%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++IND + S+ + + + L+ + V+++ + VW + Sbjct: 2 FLINDAHVLDENGSYIHSL-KSHIRHPIGVNELSLLNYMFANQGQVLSKHELMHEVWHKR 60 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 G+ V +++L +IS RRG D +I T G++ + + + Sbjct: 61 GIVVESSSLLHSISTCRRGLE---DKAGEVIRTERGIGYEFTGSVKKITSISEVTEPLEP 117 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 P IK E N ++ IK+ I++ A +G A + + + Sbjct: 118 VIETPPIKELETKVEV---TAQLNAGHIRVIKALGILILAIFVGYIGASHFYKSPLIIGY 174 Query: 183 ----FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221 +K + + G L +F+K + +G Sbjct: 175 KVTSYKQCSYMPQQQGEKVFYQN---PTLYQFEKLSLLVDSAG 214 >UniRef50_C7E4R8 Transcriptional regulator n=1 Tax=Pantoea stewartii subsp. stewartii DC283 RepID=C7E4R8_ERWST Length = 288 Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 10/126 (7%) Query: 11 FWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNT 70 F P L ++ D + L + L+LL E +P V+Q +F + VW+ G V + + Sbjct: 18 FIPA---LRTLQRDDTTLQLRKKQTDVLALLCEKYPSPVSQDEFLSEVWD--GCYVTSQS 72 Query: 71 LYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS--TDAHTHNAPPA 128 + Q I +R + D + +I T+P+ G+++ + + + D P A Sbjct: 73 IAQMIRSLRISLK---DESKKIIVTIPKLGYQLTAEPYWEASLSQPELLPDTLNERTPAA 129 Query: 129 IKVNAG 134 K+ Sbjct: 130 RKIELN 135 >UniRef50_Q1MMK4 Putative transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MMK4_RHIL3 Length = 954 Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 6/103 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + F P + L+ ++ + + + A L L+ VV++ + F W + V Sbjct: 15 GDCRFIPARQLLLHR---EVPIRVGSRAIDLLHALVRRPGIVVSKDELFRAAWPN--VFV 69 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI 109 + L NI+++RR V + + IATVP RG++ + + Sbjct: 70 DESNLKVNIAVLRRALAQV-EPDLTCIATVPGRGYRFVAPLRV 111 >UniRef50_Q2C702 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C702_9GAMM Length = 267 Score = 69.1 bits (167), Expect = 1e-10, Method: Composition-based stats. Identities = 49/253 (19%), Positives = 84/253 (33%), Gaps = 36/253 (14%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 N+ + P R+L S N N LT + L++LLEA + ++ F W E V Sbjct: 9 HNLTYDPVVRRLSS--NDGKNAFLTPKEACVLTILLEAKDQCINKEVLFCGCWGE--TIV 64 Query: 67 PTNTLYQNISIIRRGFRA-VGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125 +L IS +R+ ++ GD I+TV + G+ + Sbjct: 65 TEQSLTNIISKLRKILKSVCGDLI--TISTVIKEGYILE--------------------I 102 Query: 126 PPAIKVNAGYKESIGG---AKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 P K+ E++ K + + K ++I F + PF Sbjct: 103 LPETKIEDVSDENLVKEQCCKPATHTMSTDKKRYIICSIFFASFLMIISIYTYYARKSPF 162 Query: 183 FKD---YKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239 F D Y IN F + T + +C ++ + +P Sbjct: 163 FLDKQEYNITKNINKSRFYLQSMTKKRNASDPLFDALAATIPTDCNLDLFVRIYQSIDAP 222 Query: 240 ---GMIVMACNKN 249 GM + N + Sbjct: 223 EKEGMSIFLVNSD 235 >UniRef50_B8CUZ5 Transcriptional regulatory protein n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CUZ5_SHEPW Length = 662 Score = 69.1 bits (167), Expect = 1e-10, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 11/130 (8%) Query: 37 CLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATV 96 L L + V++Q F W ++ V + L + +S +RR F+ IAT+ Sbjct: 10 VLQYLASRPGETVSRQVLFEEFWPKQ--VVTEDALNRVMSSLRRLFKDNASNPE-YIATI 66 Query: 97 PRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSH 156 + G+K+ D+ + N + + A + I G +++ + + Sbjct: 67 RKVGYKLVADVTVLNALTTEQQATLQNEPALIQATVANEERQIIG-------VMRWLA-Y 118 Query: 157 LIMLSAFVIG 166 L++ S F+ G Sbjct: 119 LVIASVFIFG 128 >UniRef50_A3JJ41 Two component Transcriptional regulator, Winged helix family protein n=2 Tax=Marinobacter RepID=A3JJ41_9ALTE Length = 259 Score = 69.1 bits (167), Expect = 1e-10, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 5/99 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 NI F P ++ L+ +R LL+ A+P ++ + VW Sbjct: 157 GNIRFDPGTLEVALR---GSKTTLSGTPARLFELLVRAYPSFLSHEALTDAVWGAHHGET 213 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 N+L +I +R+ + + L+ T+ RG+ + Sbjct: 214 EGNSLRTHIYTLRKSLQV--GLGNGLVKTIHGRGYSLEA 250 >UniRef50_D0YXS7 Putative uncharacterized protein n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YXS7_LISDA Length = 262 Score = 69.1 bits (167), Expect = 1e-10, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 58/166 (34%), Gaps = 5/166 (3%) Query: 15 HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74 ++I V ++ + L E + +++ W +G V N+L Sbjct: 34 TNRIIKRRADSAEVKVSKSEILIFTYLAENKDKTIHRENLLKECW--QGKVVTNNSLTVA 91 Query: 75 ISIIRRGFRAVGDTTHSLIATVPRRGFKIH-NDINIQNHVINSSTDAHTHNAPPAIKVNA 133 I +R + + ++LI T P+ G+ I+ ++ + +D + A Sbjct: 92 IKNLRTALNEIDE--NNLIITEPKLGYAINGANLTHSVLSDLNDSDRNLEIQTLGKNPPA 149 Query: 134 GYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179 +E + H+ + L +L + IG ++ + Sbjct: 150 NKREIPKKNIDIILPSKNHMVTLLFLLITYFIGMQYFSFIDEKSIN 195 >UniRef50_Q1ZPR1 Transcriptional activator CadC n=1 Tax=Photobacterium angustum S14 RepID=Q1ZPR1_PHOAS Length = 481 Score = 69.1 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 74/209 (35%), Gaps = 25/209 (11%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 + IND + E+ S+ + +L ++ LS L + V + + VW+ Sbjct: 5 NFKINDCLLITTEN----SLKKSGKTYILEPRITKLLSFLAQNQGIVFTRDELIDEVWD- 59 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---IQNHVINSST 118 G V + Q+I +R+ + + + I T+P+RG+K+ D+ I + Sbjct: 60 -GAVVSDQVVTQSIFELRKILKKLDE--DHWIITIPKRGYKLDADVQQIYIDPNTGFKLE 116 Query: 119 DAHTHN--------------APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFV 164 + H+ N A P + + I A N + L + Sbjct: 117 EFHSSNEHTNDNSNLGTAFPAGPMTRAFSKPDNDIPPASVSNKISNLMLNHWLFDVGILS 176 Query: 165 IGAYSAYWLWNNNQPKPFFKDYKTVAEIN 193 + + + N KD K +IN Sbjct: 177 MLVLTLVFASWANNDNAPIKDLKNPRQIN 205 >UniRef50_C7RA75 Transcriptional regulator, CadC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RA75_KANKD Length = 741 Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 17/175 (9%) Query: 13 PEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLY 72 P+ LI L A L + VV++ + VW G V +++Y Sbjct: 14 PDRNSLIFQEEEHNIEPL---AMDVLVYFTQNPQKVVSRSELIEAVW--SGRVVGDHSVY 68 Query: 73 QNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI----------QNHVINSSTDAHT 122 + I+ +R+ D + I T+ ++G+++ D+++ V ++ + + Sbjct: 69 RIINKLRQILAR--DPSREYIKTIRKKGYQLVCDVSVSVSGLLKESFTEEVNDNEHERLS 126 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177 + + + G I LI+L V+G + + + Sbjct: 127 ESGLLSSDKSQHGVMVSKGKLTKRGLWRSSIFWGLILLIVSVVGFLTVKLYFYYS 181 >UniRef50_C9PL80 Putative uncharacterized protein n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PL80_VIBFU Length = 214 Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 7/147 (4%) Query: 13 PEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLY 72 PE + S +++ L LLE V ++ +W G+ V N+L Sbjct: 2 PEQFSIFSTD--GERYLISYNECVALCTLLEYQNTFVMRKTLLHAIWGNRGLLVDENSLN 59 Query: 73 QNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVN 132 Q IS +R+ I T+P+ G+KI + +T+ PP K + Sbjct: 60 QCISRLRKQINHSCLKQVVQIETLPKIGYKI-----VTETKRKHATNRPKKPRPPITKPH 114 Query: 133 AGYKESIGGAKNFNNKILKHIKSHLIM 159 Y++ + + + ++L + Sbjct: 115 HEYRKKLLLVSALSFSSMIGAVAYLTI 141 >UniRef50_B1KKU4 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KKU4_SHEWM Length = 711 Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 10/153 (6%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 + + L A L+ L + VV+Q + + VW V NTL + I+ +R+ Sbjct: 19 LTQKQQSQTLPPKALAVLTCLAKNKASVVSQDELLSHVWPNS--VVAPNTLQRCIAQLRK 76 Query: 81 GFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIG 140 G I T ++G+ + D++ Q + + + + Sbjct: 77 ALGDDGKVQR-YIKTHAKQGYSLEVDVHWQ-------QPEPNNANKDSSPLPTTLAVQVE 128 Query: 141 GAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL 173 + + +K + + S +I L V G + Sbjct: 129 DSPHQPSKTVSRLISAVIALLIIVFGVIGYQFF 161 >UniRef50_C9NXT9 Cholera toxin transcriptional activator n=2 Tax=Vibrio RepID=C9NXT9_9VIBR Length = 229 Score = 68.7 bits (166), Expect = 2e-10, Method: Composition-based stats. Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 8/219 (3%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 +IN++ E + S + + + L+ ++E + + + + VW + G Sbjct: 3 LINESHILDVEQGYIHSQGSNVRH-PIGINEIALLNYMIERTGETLTKHELMHEVWLKRG 61 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN-IQNHVINSSTDAHT 122 + V +++L IS RR D +I TV G++ ++ Q +A Sbjct: 62 IVVESSSLLHCISNCRRALE---DRAGEIIRTVRGTGYEFVGRVDAYQPANEVEQVEAVV 118 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 + + ++++ + ++++ I S+ L + + Sbjct: 119 PEVVEIPVPQEPKETLRSRLVKYRSQLVATGLFVIGAVASYSIIENSSSPLAYASFEQQE 178 Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221 F E NG + T L +F + + G Sbjct: 179 FASCWFTPENNGAKVHYQNST---LYDFGELTLLVDGQG 214 >UniRef50_A5L317 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L317_9GAMM Length = 295 Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 89/250 (35%), Gaps = 15/250 (6%) Query: 5 INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64 I D++ E R L H AD+ V + + L LL+ V++++ F W +G+ Sbjct: 7 ITDSVTIDIEIRTLTH-HPADITVSMRPLPFKVLLYLLKHQDRCVSREELFEECW--QGV 63 Query: 65 RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS-------S 117 V +L IS IR+ F+ + L T+ ++G+ + Q + Sbjct: 64 LVTDQSLTNTISYIRKVFKNLDTNELEL-KTISKQGYLLVISPKQQTLKVEEIKPFAEAE 122 Query: 118 TDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177 +A I + N K + L + + ++ AY+ + N Sbjct: 123 VQLELSDAGTGIDEEKIKPDLQQPVSNQKTKSKFPRQFTLNLCALWLGIILVAYYSIHYN 182 Query: 178 QPKPFF--KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLA 235 + + F KD V + + + + + I + ++ +Y + Sbjct: 183 KEQAPFLDKDNYQSYPFGSATLYVHDQSNTITEP--EMTSYINNLELSQCNVKSIYIRIT 240 Query: 236 KSSPGMIVMA 245 S+ +++ Sbjct: 241 NSAFRDNIIS 250 >UniRef50_C9B1W4 DNA binding response regulator n=4 Tax=Enterococcus RepID=C9B1W4_ENTCA Length = 230 Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 6/104 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + F+P L + L+ +R LSLLL+ +VA++ +W E + Sbjct: 133 GQVTFYPTENVL---KKQGEQLPLSPNEARILSLLLQHRGKIVAKETIIEMLWNSEEF-I 188 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ 110 NTL N++ +R+ + LI TV +G+ I + Sbjct: 189 DNNTLAVNMTRLRKKLSQI--ELSDLIQTVKNKGYLIEKEHAYD 230 >UniRef50_B1KAJ7 Transcriptional regulator, winged helix family n=3 Tax=Burkholderia cenocepacia RepID=B1KAJ7_BURCC Length = 493 Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 6/108 (5%) Query: 20 SVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIR 79 S+ + + + A L++LL A +V + + VW G V N L +IS +R Sbjct: 14 SLRRDGKAIHVGSRAFDVLAVLLSAAGRLVTKDELMAAVWP--GTVVEENNLQVHISALR 71 Query: 80 RGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPP 127 + LI TVP RG+++ ++ ++ + P Sbjct: 72 KLLG----PQRDLIVTVPGRGYQLTQKSAPSANLTPATPLRQGDSDIP 115 >UniRef50_A3QBG0 Transcriptional regulator, CadC n=1 Tax=Shewanella loihica PV-4 RepID=A3QBG0_SHELP Length = 696 Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 4/97 (4%) Query: 13 PEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVW-EEEGMRVPTNTL 71 KL+S+ +AD ++ L++ L L +++ +VV++Q +W EG V Sbjct: 12 ELDCKLMSLKHADSSIKLSSKVFELLMLFIDSPDNVVSRQQAIDTIWLGNEG--VGKKGF 69 Query: 72 YQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108 I ++R+ F+ +G + T+P+ G+++ + Sbjct: 70 TNGIWVLRKTFKDLG-VEEEVFNTLPKLGYQLTLTVQ 105 >UniRef50_A6ENM5 Two-component system response regulator n=1 Tax=unidentified eubacterium SCB49 RepID=A6ENM5_9BACT Length = 289 Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 7/98 (7%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + F+P+ KL+ A + L+ L++L+ +V ++ +VWE+ G+ V Sbjct: 196 GSFYFYPDQNKLV---KAATEINLSKKECELLTILVTNANQIVTREILEKQVWEDHGVVV 252 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104 + L IS +R+ ++ D I + G+K+ Sbjct: 253 GRS-LDTYISKLRKKLKSDDDLK---ITNIHGVGYKLE 286 >UniRef50_A6UHF5 Transcriptional regulator domain protein n=13 Tax=Proteobacteria RepID=A6UHF5_SINMW Length = 531 Score = 68.3 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 16/156 (10%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++ D + E R+L V + L L+ VV++ + VW Sbjct: 1 MQFMFADYVL-DRERRELTLR---GQVVSVGPQVFDLLLHLVGTRDRVVSKDELLQAVWG 56 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS--- 117 G V +T+ +I+ +R+ G L+ TV R+GF+ DI I + Sbjct: 57 --GRIVSESTITSHINAVRKAIGDTGG-EQRLVRTVARKGFRFVGDIRIADSAEARQPGG 113 Query: 118 ------TDAHTHNAPPAIKVNAGYKESIGGAKNFNN 147 T + PPA+ + ++ +N + Sbjct: 114 PGSAGHTSLGSKEPPPALALPDKPSITVLPFQNLSG 149 >UniRef50_C9Y6H6 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y6H6_9BURK Length = 526 Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 16/163 (9%) Query: 25 DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84 V++ A L +L++ ++V ++ F VW G+ V N L ++S +RR A Sbjct: 33 GQTVMVGARAFDVLCVLVDHAGELVTKKKLFDLVWP--GLVVEENNLQVHVSSLRRILGA 90 Query: 85 VGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGG--- 141 IATVP RG++ + + ++ + + + Sbjct: 91 ------DAIATVPGRGYRFTLRLAAVPSAVETAQASKGKGRASDQQAYRRTIAVLPFVNL 144 Query: 142 -----AKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179 + F++ + + I SHL ++ + ++ + + N + Sbjct: 145 NADPEQEYFSDGLAEDIISHLTKSPWLLVVSRNSSFAYRNTKE 187 >UniRef50_D1TLX7 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TLX7_9BURK Length = 476 Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 6/99 (6%) Query: 20 SVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIR 79 V ++ L + A L+ L A VV++ + VW G V + NIS +R Sbjct: 14 CVRRDGQDLRLGSRAFDLLATLASANGRVVSRSELMQTVWP--GTVVEDCNIDVNISALR 71 Query: 80 RGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118 + LI TV RRG+++ +IQ + +++ Sbjct: 72 KALGD----DRDLIVTVARRGYQLAPSRHIQPKLRTAAS 106 >UniRef50_B6EKJ8 Putative transcriptional regulator n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EKJ8_ALISL Length = 542 Score = 67.9 bits (164), Expect = 3e-10, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 6/114 (5%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + IND E++ ++ D V + L L + +V + + VW+ Sbjct: 6 FQINDWTLVIEENK----LYRQDREVSVEPRLVNLLRFLAQHSGEVFCRDELIQHVWD-- 59 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS 116 G V + Q+I +R+ R + TVP+RG+K+ D + N Sbjct: 60 GAFVTDQVVTQSIFELRKILRDGRLDNARYLVTVPKRGYKLVADTQLVNFEETE 113 >UniRef50_Q2BXY4 Putative uncharacterized protein n=2 Tax=Photobacterium RepID=Q2BXY4_9GAMM Length = 264 Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 24/193 (12%) Query: 12 WPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTL 71 R + + + + ++ + +LL + V ++ W +G V N+L Sbjct: 18 DYSRRTITRISDN-AVLKVSRSETHIFALLANTANNTVHREILLKECW--QGKIVTNNSL 74 Query: 72 YQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN--------------DIN--IQNHVIN 115 I +R F +G+ H++I T P+ G+ I DI+ I+ H I Sbjct: 75 TVAIKNLRTSFSKIGE--HNIITTEPKLGYSIRETSLADDGSHPPLLVDISKHIEAHEIA 132 Query: 116 SSTDAHTHNAPPAIKVNAGYKE---SIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYW 172 + H K K+ + N + I S + + FV Y + Sbjct: 133 EKLELQEHQESVIEKQEITGKKKKYILLNKSNTASLFDFLIVSFFFLATLFVCYQYLFFV 192 Query: 173 LWNNNQPKPFFKD 185 + P + Sbjct: 193 NTTDVDGIPVNYN 205 >UniRef50_D2T5X7 Uncharacterized protein yqeI n=2 Tax=Erwinia pyrifoliae RepID=D2T5X7_ERWPY Length = 268 Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 54/269 (20%), Positives = 98/269 (36%), Gaps = 18/269 (6%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 I D + R L H+ +V+L T A RCL+ L +A V++Q+ W G Sbjct: 6 TIGDLVRLDRRTRSLSRTHDG-KSVMLPTAACRCLAALAQAKEQVLSQEQLMDIGWRHAG 64 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 + V N++ I+ IRR + + V R G+++ I +TD Sbjct: 65 VEVTDNSVRVMITKIRRALVTLKVDERIQLIAVTRSGYRL-----IVRADRPGATDLSAA 119 Query: 124 NA-PPAIKVNAGYKESIGGAKNFNNKILKHIK---SHLIMLSAFVIGAYSAYWLWNNNQP 179 A ++ +++ + I + L++ S A + + L + P Sbjct: 120 KRGVQAARILPAAGGDALPVIAPRSRLQRRIAAGGAGLVLGSC--AVAVTGWLLTIDPVP 177 Query: 180 KPFFKDYKTVAEING---CHFNVTEDTIDGLKEFDKYKTRILDSG--INCKKHPWLYFPL 234 + + Y A + ++ Y L+ IN + +LY Sbjct: 178 VHYIRWYDGKAPPQSEVWVPEKAQPEKQQVIQTLQLYTQFALNKEGDINAEHARYLYITT 237 Query: 235 AKSSPGMIVMACNKNYNQHEVANCLTLSY 263 KSSP + ++AC NC + S+ Sbjct: 238 GKSSPHLGLIACVTPLR-DSENNCESYSF 265 >UniRef50_Q142F7 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Burkholderia xenovorans LB400 RepID=Q142F7_BURXL Length = 436 Score = 67.9 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 15/156 (9%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRC-------LSLLLEAFPDVVAQQDFFT 56 ++N EF ++ ++ V + A R L L++E+ V ++ Sbjct: 36 VLNTQEEFVSKNSCIVRFDWRHDRVSVGHIAVRVSGQEKDVLRLMVESAGRVCDREALMG 95 Query: 57 RVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS 116 VW E + + L Q + +R+ R +G H I T+PR G++ + + Sbjct: 96 VVWGERAIHMDELYLTQLVYRLRKSLRPLGLGDH--IVTMPRTGYRFEPE------GLQI 147 Query: 117 STDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKH 152 TD + PA A +E N + Sbjct: 148 DTDEPAPDETPAPVGAAVAEEPAPRRATLRNWFARL 183 Score = 52.9 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 3/83 (3%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 V +A V LT S L +E + + + +R+W +E V N L + +S +RR Sbjct: 209 VTHAGATVHLTGFESALLQAFVEQPDVTLERDELISRIWGDE-QDVDVNRLTRLVSRLRR 267 Query: 81 GFRAVGDTTHSLIATVPRRGFKI 103 + +G + +P G++ Sbjct: 268 SLQPLGLERQ--LVYIPCVGYRF 288 >UniRef50_Q6GZK0 Cad operon transcriptional activator (Fragment) n=9 Tax=Enterobacteriaceae RepID=Q6GZK0_ECOLX Length = 97 Score = 67.5 bits (163), Expect = 4e-10, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 17 KLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNIS 76 + + + L L + +V+++ + VW+ V + + Q+IS Sbjct: 16 SINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS--IVTNHVVTQSIS 73 Query: 77 IIRRGFRAVGDTTHSLIATVPRRG 100 +R+ + + + IATVP+RG Sbjct: 74 ELRKSLKDNDEDSPVYIATVPKRG 97 >UniRef50_A3W8K2 Putative uncharacterized protein n=1 Tax=Roseovarius sp. 217 RepID=A3W8K2_9RHOB Length = 393 Score = 67.5 bits (163), Expect = 4e-10, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%) Query: 30 LTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTT 89 L + R L +LL+ +V++ D VW + V ++L Q +S +RR G Sbjct: 11 LRPKSYRLLEVLLDRRGKLVSKDDLVREVWPN--VFVSDDSLAQCVSDVRRAL---GAEG 65 Query: 90 HSLIATVPRRGFKIHNDINI 109 L+ TVPRRG+ + ++ I Sbjct: 66 AGLLRTVPRRGYVLLDEDAI 85 >UniRef50_A1SYN7 Cholera toxin transcriptional activator-like protein n=2 Tax=Psychromonas RepID=A1SYN7_PSYIN Length = 282 Score = 67.5 bits (163), Expect = 5e-10, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 7/100 (7%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 LI + V L + L L + VV ++D VW G V Sbjct: 13 GEFLIDTSQNSLIHTN---RKVYLGPLRTSLLHFLCKNVNKVVTREDLAQHVW---GRLV 66 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 +T+ Q+IS +R+ + + I+T+P+RG+ D Sbjct: 67 TDHTINQHISQLRKSIGTLVLHGLN-ISTIPKRGYIARMD 105 >UniRef50_A5ED47 Transcriptional regulator n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5ED47_BRASB Length = 972 Score = 67.1 bits (162), Expect = 6e-10, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 10/103 (9%) Query: 5 INDNIEFWPEHRKL----ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 + + F ++ + V L A + +L+++ +V + + ++VW Sbjct: 25 LGGKVVFATGEWEIDLDRRELRARGGPVPLGGRAFEIMEVLIKSEGKLVTKDELLSQVWP 84 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103 G V NTL +IS +R+ ++ T+ RG+++ Sbjct: 85 --GATVEENTLQVHISALRKAL----GPDREMLKTISGRGYRL 121 >UniRef50_Q182M4 Two-component response regulator n=14 Tax=Clostridiales RepID=Q182M4_CLOD6 Length = 242 Score = 66.7 bits (161), Expect = 7e-10, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 46/104 (44%), Gaps = 4/104 (3%) Query: 2 YWII---NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRV 58 +I+ +D ++ E++ +I + + ++L+ ++ L L+E + ++ + Sbjct: 131 NYILLVCDDLFFYYIENKLIIRTDDKEEEIILSKTETKLLKYLMENSMQTLTKEQLLESL 190 Query: 59 WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFK 102 W+ G V NT+ NI +R+ + I TV G+ Sbjct: 191 WDSSGNFVDDNTIAVNIRRLRQKVEK-NPSEPKYIKTVRGVGYM 233 >UniRef50_A7B4Z9 Putative uncharacterized protein n=2 Tax=Ruminococcus RepID=A7B4Z9_RUMGN Length = 236 Score = 66.7 bits (161), Expect = 7e-10, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 N+ +P+ RK+ + + + LT L LL++ V +++ + +VW + G Sbjct: 144 KNLSLYPQSRKVEV---SGIELPLTMHEYDILYLLIQNPQKVYSREHLYEQVW-KGGYYG 199 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104 NT+ ++S +R+ + D S I TV GFK+ Sbjct: 200 EDNTVNVHVSNLRKKIQKA-DKEESYIKTVWGIGFKLE 236 >UniRef50_Q2T8V0 Transcriptional regulator, putative n=9 Tax=pseudomallei group RepID=Q2T8V0_BURTA Length = 255 Score = 66.7 bits (161), Expect = 7e-10, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 9/168 (5%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++I D + F L+++ + D LTT S L ++L+ + + +VW Sbjct: 3 KYLIEDLVTFD---AHLMTLTHLDQTTELTTNESELLQMVLDG---MATKAAVIQQVWGS 56 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 +G+ V ++ +Q + +R G + +LI T+PR+G K + + Sbjct: 57 KGLVVTDSSYHQLVRSVRSRLEEHG-ISGALIKTLPRQGLKFLGSAQALTDAPVPAAERG 115 Query: 122 THNAPPAIKVN--AGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGA 167 + A + + + ++ + A + G Sbjct: 116 LADLDEAADEASRGPLAQHEPPSAPPAGRARNWRRTLRFVERALLAGL 163 >UniRef50_Q39G50 Transcriptional regulator, winged helix family n=11 Tax=Burkholderia RepID=Q39G50_BURS3 Length = 877 Score = 66.7 bits (161), Expect = 8e-10, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 10/140 (7%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 + + + A L LL+EA +VV++ + RVW V N L I+ +R+ Sbjct: 16 IRLNGEPLRIGNRAFDVLELLIEAEGEVVSKDEIMRRVWA--HTVVEENNLQVQIATLRK 73 Query: 81 GFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIG 140 A I T RG+++ + +S A T P ++ +G Sbjct: 74 ALGA----DRGRIVTAAGRGYRLVA----VHDEDETSALAQTSRCPAEPRILFDPSMLVG 125 Query: 141 GAKNFNNKILKHIKSHLIML 160 + + +S ++ L Sbjct: 126 RQCMIEEILAELERSRVVTL 145 >UniRef50_Q987X1 Transcriptional regulator n=1 Tax=Mesorhizobium loti RepID=Q987X1_RHILO Length = 903 Score = 66.7 bits (161), Expect = 8e-10, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 6/122 (4%) Query: 6 NDNIEFWPEH--RKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 F P R+ ++ + L + A L +L+ +VV ++ VW + Sbjct: 3 GQIFRFGPFEMHREQRRLYRDGKLLQLGSRAFDILQILVMRAGEVVRHEELIAMVWPD-- 60 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 V N L N++ +RR G T+ LIA VP RG+ + Q + + D H + Sbjct: 61 TFVAENNLRVNMTALRRALGPEGSLTNGLIANVPGRGYSFTAPVAHQT--VEHAPDRHDN 118 Query: 124 NA 125 + Sbjct: 119 SE 120 >UniRef50_A6CVT0 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CVT0_9VIBR Length = 267 Score = 66.7 bits (161), Expect = 8e-10, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 64/214 (29%), Gaps = 14/214 (6%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + ++ ++R L +D V L+ L L+ + + T W Sbjct: 1 MNYHRRHDLVINLDNRMLTKTS-SDKVVTLSPSECLILKHLMNNGSQTLGRDYLLTHCWP 59 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH--NDINIQNHVINSST 118 G V ++L + IR V + + TV + G+ + ++Q + S Sbjct: 60 --GRVVTNSSLNVAVKNIRNALLEV--ESRCKVITVQKEGYCLVVPEQSDVQVVGFDGSR 115 Query: 119 DAHTHNAPPAIKVNAGYKESI-GGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177 + P VN + S +K + L L A + + L Sbjct: 116 STVNADQPKLDAVNPPIETSDTSPSKYHSLAKLSQFSYQFAPLGAGIAVSILVIVLLF-- 173 Query: 178 QPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFD 211 + ING +D D Sbjct: 174 ----RIGFFMERTAINGIDVYHDNAALDSQVMAD 203 >UniRef50_B2T985 Transcriptional regulator, winged helix family n=2 Tax=Burkholderia RepID=B2T985_BURPP Length = 504 Score = 66.7 bits (161), Expect = 9e-10, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 6/106 (5%) Query: 13 PEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLY 72 P R+L + V L + A L L++ VV ++ +R W + V + L Sbjct: 34 PTERRL---ERSGSVVQLGSRALDILIALIQHAGQVVDRRKLMSRAW--RNIVVDESNLR 88 Query: 73 QNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118 NI+ +R+ G+ + VP G+ + + SS+ Sbjct: 89 VNIAGLRKALGD-GEDGVRYVKNVPGIGYCFVGQLTRERIATESSS 133 >UniRef50_A4CDM5 Putative transcriptional regulator n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CDM5_9GAMM Length = 722 Score = 66.4 bits (160), Expect = 9e-10, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 31/201 (15%) Query: 10 EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69 F ++L + L + CL+ LL+A V + VW + N Sbjct: 10 IFDENKQELKYLD--GTTKRLPARLNNCLASLLKAQGQTVIYDELLEAVWGT--IYRDYN 65 Query: 70 TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI------QNHVINSSTDAHTH 123 T+ +S +R+ + + I TVP++G++ +I +N+ + + D+H Sbjct: 66 TIASVVSELRK-LINCRSSKVNYIVTVPKKGYRFSCYEHIQLVDSQENNALEQNIDSHNT 124 Query: 124 --------------------NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAF 163 +P IK + + + +F + S +++ Sbjct: 125 ELKDVATEIEPQLAPQNAIIESPQVIKSPSSINTVVNSSSSFTGRKKALTYSFALVILLI 184 Query: 164 VIGAYSAYWLWNNNQPKPFFK 184 V A ++++ Sbjct: 185 VCAAVLLRPYFSSDNLNIHSS 205 >UniRef50_Q67JF4 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67JF4_SYMTH Length = 236 Score = 66.4 bits (160), Expect = 9e-10, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 3/82 (3%) Query: 24 ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83 D V L+ R L L ++V ++ +W++ V NTL N++ +RR Sbjct: 154 GDRTVELSPKEFRLLWCLARRAGEIVGRETLLEELWDDTEF-VDDNTLTVNVTRVRRRLE 212 Query: 84 AVGDTTHSLIATVPRRGFKIHN 105 +G T +I T +G++++ Sbjct: 213 ELGLTG--VIETKRGQGYRLNA 232 >UniRef50_B8CQV8 Transcriptional regulatory protein n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CQV8_SHEPW Length = 452 Score = 66.4 bits (160), Expect = 9e-10, Method: Composition-based stats. Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 10/164 (6%) Query: 5 INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64 I + + + R L+ + + + L+ L L+ DVV+++ T W G Sbjct: 3 ITEFLIIDLDARDLVDLRTTERH-ALSLAELEVLKCLVSHVGDVVSKEQLNTAGWP--GR 59 Query: 65 RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHN 124 V ++L Q +S +R+ A D + +PR G+ + I + ++ + Sbjct: 60 VVAPSSLTQCMSSLRKKLVAQTDIE---LKNIPRYGYSL----CIVDEHDIATDETKAET 112 Query: 125 APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY 168 A++ +K N + I +++ A +I Sbjct: 113 VSTAVQPQTEEGHVAFKSKRLNINLASRIVWSTLVVLAGIIITL 156 >UniRef50_B6FSP5 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSP5_9CLOT Length = 226 Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 1/82 (1%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 V+ + + LT + L+L E ++ + + +W+E G V NTL I +R Sbjct: 143 VYKNNERIELTALEYKILALFFENKGRILTRGQILSGIWDESGNFVNNNTLTVYIKRLRE 202 Query: 81 GFRAVGDTTHSLIATVPRRGFK 102 +I TV G+K Sbjct: 203 KIEE-DPNAPKIIKTVRGMGYK 223 >UniRef50_C6LC42 DNA-binding response regulator RegX3 n=3 Tax=Clostridiales RepID=C6LC42_9FIRM Length = 224 Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 5/83 (6%) Query: 25 DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84 + L++ + L LL+E V ++ +VW+ G V NTL + +R Sbjct: 147 QEEIRLSSLEYQILLLLMENKGKTVTRKQLLEQVWDSGGNFVNDNTLTVAMKRLREKLHN 206 Query: 85 VGDTTHSLIATVPRRGFKIHNDI 107 S + T+ G+++ I Sbjct: 207 -----PSCLKTIRSFGYRMEESI 224 >UniRef50_B1KWY3 DNA-binding response regulator n=33 Tax=Firmicutes RepID=B1KWY3_CLOBM Length = 237 Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 4/102 (3%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 II+ +I K+ + ++LT + L +L+E +V+++ ++W+ +G Sbjct: 140 IISKDITIELLKAKVF---KGEEEILLTAGEYKLLLILVENKGNVLSRNILLEKIWDVDG 196 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 V NTL I +R I TV G++ Sbjct: 197 SFVDGNTLNVYIKRLREKIEK-DPKKPEYIETVRGIGYRWSE 237 >UniRef50_Q3KEV5 Putative transcriptional regulator n=2 Tax=Pseudomonas fluorescens RepID=Q3KEV5_PSEPF Length = 928 Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 9/118 (7%) Query: 6 NDNIEFWPEH----RKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 N I F P ++L V D + L A L +LL +VV++Q VW + Sbjct: 6 NQAIGFGPYRIHPGQRL--VLEGDQPLRLGRRAMDILLILLAHAGEVVSKQQLIAGVWPD 63 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTD 119 V L +++ +R+ G I TV +RG+ + +Q+ +T Sbjct: 64 S--VVEDINLRVHMAALRKALGD-GQAGQRYIVTVAQRGYSFVAPVVLQSIEQRPTTA 118 >UniRef50_UPI0001B9ECAC two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9ECAC Length = 317 Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 3/87 (3%) Query: 20 SVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIR 79 SV L+ ++ L L++ +V++ ++W+++ V NTL I+ +R Sbjct: 229 SVSLGPTQAELSHTEAKILDELMKKPEQIVSRDRLLEKIWDDQ-AFVDDNTLNVYITRVR 287 Query: 80 RGFRAVGDTTHSLIATVPRRGFKIHND 106 + A+G + TV RG+++ Sbjct: 288 KKLAALGI--EDGLQTVRGRGYRLVPS 312 >UniRef50_B8CQQ2 Transcriptional regulatory protein n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CQQ2_SHEPW Length = 711 Score = 66.4 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 23/177 (12%) Query: 7 DNIEFWPEHRKL---ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 P L S+ +A+ L L+ L FPDVV++++ +W + Sbjct: 11 GRCIVDPSDHSLRFLSSLESAEACTTLQPKFIEVLAYLASRFPDVVSREEIIEHIW-DGN 69 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 V + L I +R+ + D +I TV + G+++ + + + D Sbjct: 70 AYVGSKALTNAIWHLRQQLSPISD--EPIIETVRKSGYRLLIEPQYSSADLVDDVDVLQQ 127 Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 + + +S + + + VI + + ++Q K Sbjct: 128 LQ-----------------SRAESLTIALKRSWITVAAVSVISLITLAYHLYHDQIK 167 >UniRef50_C9XSJ2 Two-component response regulator n=15 Tax=Clostridiales RepID=C9XSJ2_CLODC Length = 228 Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 1/83 (1%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 V V L+ R L + + ++ + +W+ G V NTL I +R Sbjct: 140 VKKNGNEVFLSALEYRLLLVFISNPKSIITRVRLLDELWDAAGEFVNDNTLTVYIKRLRE 199 Query: 81 GFRAVGDTTHSLIATVPRRGFKI 103 ++ +I TV G+++ Sbjct: 200 KIED-DPSSPQIILTVRGTGYRL 221 >UniRef50_A4X1M5 Two component transcriptional regulator, winged helix family n=2 Tax=Salinispora RepID=A4X1M5_SALTO Length = 251 Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 2/90 (2%) Query: 25 DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84 V L R L + V+++ + VW+ +NTL +I +R+ A Sbjct: 161 GRPVSLPLKEFRLLYFFMTHADRTVSREQLLSAVWDGSTGE-SSNTLTVHIKRLRKRLEA 219 Query: 85 VGDTTHSLIATVPRRGFKIHNDINIQNHVI 114 G+ LI TV G++ ++ Sbjct: 220 EGE-PQPLIITVRGLGYRFTPPEQMEPSST 248 >UniRef50_C8W7R9 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=C8W7R9_ATOPD Length = 223 Score = 66.0 bits (159), Expect = 1e-09, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%) Query: 24 ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83 +V LT R LSLL++ VV++Q +W+ + V NTL NIS +R Sbjct: 146 NQKSVELTKNELRILSLLMQNAGTVVSRQRIQEELWQSDEF-VDDNTLTVNISHLRNTLA 204 Query: 84 AVGDTTHSLIATVPRRGFKIH 104 ++G + T G+ I Sbjct: 205 SIGV--EDFVMTRRGLGYVIE 223 >UniRef50_B5WFU1 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. H160 RepID=B5WFU1_9BURK Length = 558 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 6/113 (5%) Query: 13 PEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLY 72 P R+L + V L + A L +L++ VV ++ +R W + V + L Sbjct: 88 PAQRRL---ERSGSFVQLGSRALDILIVLIQHAGQVVDRRMLMSRAW--RNIVVDESNLR 142 Query: 73 QNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125 NI+ +R+ G+ + VP G+ + + V S + + Sbjct: 143 VNIAGLRKALGD-GEGRVRYVKNVPGIGYCFVGQLTRERIVAESGSQIAEPSP 194 >UniRef50_A5N5X6 Transcriptional regulator n=5 Tax=Clostridium RepID=A5N5X6_CLOK5 Length = 225 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 5/98 (5%) Query: 8 NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 ++ F P +L N V LT+ S+ L LL V+ + RVW + Sbjct: 132 SLTFDPLRGELQYKENK---VKLTSKESQLLELLARNKNQVLTKDQILDRVWGPDSDVEM 188 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 N + S +R+ R + + +I T+ G+ + Sbjct: 189 NNNIEVYFSYLRKKLRRLNC--NVIIETIRGIGYCLKE 224 >UniRef50_C5EI97 Response regulator receiver protein n=8 Tax=Bacteria RepID=C5EI97_9FIRM Length = 234 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 6/99 (6%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 NI + R+L V L+ + + L+ V+ + + +W + V Sbjct: 137 SNITMDTDRRELA---GPSGTVSLSRREAALMEYLMRNAGQVLPRGLILSYIWGPDS-EV 192 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 L I +RR +AVG I TV G+++ + Sbjct: 193 EDGNLDNYIYFLRRRLKAVGTAAQ--IKTVHGIGYRLED 229 >UniRef50_B1Y588 Transcriptional regulator domain protein n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y588_LEPCP Length = 543 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 11/105 (10%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 E P+ R+++ V L A L L+ VV + + +VW GM V Sbjct: 8 GEFEVRPDERRVLLRGEP---VPLGARAFDVLMCLIAQRERVVTKNELLEQVWP--GMVV 62 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQN 111 N L ++S +R+ F A +AT+P RG++ ++ Sbjct: 63 EENNLTVHVSALRKVFGAQA------VATIPGRGYRFVMALDETT 101 >UniRef50_A6FDL9 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6FDL9_9GAMM Length = 399 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 7/115 (6%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + I++++ F L S D L++ + LL VV+++ W Sbjct: 1 MTYKISNDVIFCKIKANLKS---PDSTQKLSSSEKEIIDLLCSKNGAVVSKEALKVIGWP 57 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN 115 G+ V +L Q I +R+ G +IATV +G+ + N + ++ Sbjct: 58 --GLEVTDQSLTQAIYSLRKKLALCG--ADDVIATVFNQGYTVKNAAVLSEDALS 108 >UniRef50_B2Q5H8 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q5H8_PROST Length = 142 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 7/111 (6%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 I+++++ + P R L + L+ S L LLL ++++ +WE+ G Sbjct: 14 ILSEHVVYDPLKRTLSR---GKKTINLSENESCLLKLLLNKTS---SKREIMYEIWEKRG 67 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI 114 V ++ Y+ + +R F+ + + +LI T+PR G + +H + Sbjct: 68 TIVTESSYYKLVRQLRLSFKKM-ELDENLIMTLPRVGILYTGTKSEASHAL 117 >UniRef50_A0KMK1 Transcriptional regulatory protein, C terminal n=1 Tax=Aeromonas hydrophila subsp. hydrophila ATCC 7966 RepID=A0KMK1_AERHH Length = 312 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 9/136 (6%) Query: 7 DNIEFWPEHRKLISVHNADLN-VVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65 + L H+ + V ++ +R L L + +++ W+ G Sbjct: 91 GRFVLDSKQLTLTRSHDGNPTSVRVSAAEARLLHFFLTHAGSLHSKETLLAIGWD--GRP 148 Query: 66 VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI----HNDINIQNHVINSSTDAH 121 V ++L I+ +RR ++I T+PR+G+ + I S ++ Sbjct: 149 VSASSLPVAIANLRRYLDT--PEQEAVIRTLPRQGYLLMLSPAAMQAIPTASTPSLSEPA 206 Query: 122 THNAPPAIKVNAGYKE 137 AP E Sbjct: 207 ADPAPLPEAGEPVATE 222 >UniRef50_A6TN88 Two component transcriptional regulator, winged helix family n=24 Tax=Firmicutes RepID=A6TN88_ALKMQ Length = 224 Score = 65.6 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 3/80 (3%) Query: 24 ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83 + LT + ++LL+ ++V + +W++E V NTL NI+ +RR Sbjct: 147 GKREIELTPNECKIVTLLIRNHGNIVTRTRLMKALWDDESF-VDDNTLTVNINRLRRKLE 205 Query: 84 AVGDTTHSLIATVPRRGFKI 103 +G + T+ G+++ Sbjct: 206 EIGL--EGYVKTIKGEGYRL 223 >UniRef50_Q5E341 DNA-binding transcriptional activator CadC n=9 Tax=Vibrionaceae RepID=Q5E341_VIBF1 Length = 541 Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 57/164 (34%), Gaps = 17/164 (10%) Query: 9 IEFWPEHRKLISVHNA----DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64 I F L+ N D V + L L + +V + + VW+ G Sbjct: 4 ICFQINDWTLVIEENKLYRQDREVSVEPRLINLLRFLAQHSGEVFCRDELIKHVWD--GA 61 Query: 65 RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND---INIQNHV-------- 113 V + Q+I +R+ R + TVP+RG+K+ + I +++ Sbjct: 62 FVTDQVVTQSIFELRKVLRDGRLDNTRYLVTVPKRGYKLVAETKQIRLEDTPYWKPCDTF 121 Query: 114 INSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHL 157 ++ D + ++ ++ +F L +++ Sbjct: 122 TSTEADENQNHNVELNTEEQEKEQDETAQLSFPAGPLTRAVTNI 165 >UniRef50_C0CI50 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CI50_9FIRM Length = 224 Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 4/96 (4%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + + ++L ++ V LT R L L+ V+ ++ VW+ V Sbjct: 129 GDFVYDYAKKELTI---QNVPVKLTATELRLLEYFLKNRGQVLTREQILENVWDSYENFV 185 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFK 102 TL N+ +R I T+ G+K Sbjct: 186 DERTLNVNVRRLREKIEK-DPKNPRYIVTMFGIGYK 220 >UniRef50_C6XRJ0 Transcriptional regulator, CadC n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XRJ0_HIRBI Length = 398 Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 5/129 (3%) Query: 15 HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74 R L ++ ++ L A LSLL+E + ++++ +W + +L + Sbjct: 19 DRDLGTITFEGDDLKLRPKAYEFLSLLVEGRGRLFSKEELLETLWP--HVFATEESLARV 76 Query: 75 ISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAG 134 +S R GD ++I T+P+RG++I + + + A A Sbjct: 77 VSTCRCAL---GDEEKTIIVTIPKRGYRIGLPVFTDKDDVAERQLSEVKYAQSGDISIAY 133 Query: 135 YKESIGGAK 143 +G + Sbjct: 134 QTSGLGPSD 142 >UniRef50_A4C7M7 TolB domain protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C7M7_9GAMM Length = 689 Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats. Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 24/169 (14%) Query: 12 WPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTL 71 P ++ N + L L L P++V ++ VW+ G V L Sbjct: 15 NPLENTVV---NQEQTNSLQPKFIEVLVFLASQHPNIVTREQIINAVWDGNG-YVGEKAL 70 Query: 72 YQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKV 131 I +R+ T I T+ + G+++ + Q + Sbjct: 71 TNAIWHLRKTLVD-KPTQQEYIETIRKTGYRLLYQPHYQE-------------------L 110 Query: 132 NAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 + ES+ + + +K + + M +IG + + + P Sbjct: 111 ESQLAESLLIKQWYAKWPIKWLSAIAFMGVFILIGLFVGLFSRPSVAPT 159 >UniRef50_Q5LZ35 Response regulator (Homolog to RR01Spn & Sth) n=122 Tax=Bacteria RepID=Q5LZ35_STRT1 Length = 226 Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 3/83 (3%) Query: 24 ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83 V LT + L +L + ++V+++D +W + NTL N++ +R+ Sbjct: 146 QGEVVSLTKNEFQILQVLFDHAGNIVSREDLMKELW-NSDFFIDDNTLSVNVARLRKKLE 204 Query: 84 AVGDTTHSLIATVPRRGFKIHND 106 AVG I T G+ + +D Sbjct: 205 AVGL--KDFIETKKGVGYGLRHD 225 >UniRef50_C9A7F3 DNA binding response regulator n=4 Tax=Enterococcus RepID=C9A7F3_ENTCA Length = 231 Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 6/98 (6%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + ++PE K++ ++ LT L+LL+ A P++V ++ +W++E V Sbjct: 134 GELIYYPEALKMVYREASEW---LTVREGELLTLLMSAHPEMVKRERILNLLWDDE-RFV 189 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104 NTL N+ +R+ A+G + I T+ +G+ + Sbjct: 190 DDNTLSVNVGRLRKKLAAMGI--NDPIQTIRGKGYALS 225 >UniRef50_B8KCT7 Transcriptional regulatory C terminal domain protein n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8KCT7_VIBPA Length = 212 Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 15/151 (9%) Query: 24 ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83 D + +T P S L LLEA +VV + + W + N+L I+ +R+ Sbjct: 33 NDKSFSITIPESYVLKRLLEAKGEVVDKNTLISEGWG-RPDIIGPNSLPVAITNLRKIL- 90 Query: 84 AVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAK 143 D + I VPR+G+++ S + + + + V++ + E+ + Sbjct: 91 ---DLSSVKIVNVPRKGYRLE---------FPSEGETLPNMSKTRVTVDSEWHENNIDHR 138 Query: 144 NFNNKILKHIKSHLIMLSAFVIGAYSAYWLW 174 +N ++ + +++ W+ Sbjct: 139 EVSNATF-LTALLCVVGAIYILMYMGFSWVT 168 >UniRef50_Q0ANH0 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Maricaulis maris MCS10 RepID=Q0ANH0_MARMM Length = 183 Score = 65.2 bits (157), Expect = 2e-09, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 9/98 (9%) Query: 24 ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83 L + L LL V + +F VWEE+G L Q IS +RR Sbjct: 32 KGETHRLEPRLAGVLHLLARRGISPVTRDEFLETVWEEDG---SDEALNQAISRLRRLLG 88 Query: 84 AVGDTTHSLIATVPRRGFKIHNDIN-IQNHVINSSTDA 120 SLI T+PR G+ + + + + T Sbjct: 89 DA-----SLIRTLPRIGYSLSAPVERAETLPNPAPTSP 121 >UniRef50_Q03AM3 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=7 Tax=Lactobacillus RepID=Q03AM3_LACC3 Length = 215 Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 1/84 (1%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 V + VVLT R L+ ++A+ +W+ V NTL I +R Sbjct: 132 VTKNETAVVLTAAEYRLLAYFFANPNQILARDQLLAALWDTREQFVADNTLTVTIKRLRE 191 Query: 81 GFRAVGDTTHSLIATVPRRGFKIH 104 +LI TV G+ I Sbjct: 192 KLED-DPAHTTLIRTVRGMGYFID 214 >UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=16 Tax=Firmicutes RepID=B7GFY6_ANOFW Length = 226 Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 15 HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74 +R ++ ++LT + L LLL+ V+ + R+W V T+ Sbjct: 140 NRTSHTLLKDGEQIILTPREFQLLDLLLQNRGRVLTRDIILDRIWG-YDADVSMKTIDAT 198 Query: 75 ISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104 + ++R+ +GD LI TV G+ I Sbjct: 199 VKLLRK---KIGDEQQQLIKTVRGVGYTIE 225 >UniRef50_A4CDV0 Putative transcriptional regulator n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4CDV0_9GAMM Length = 676 Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 4/123 (3%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + F +LI H++ L S+ L L + +V++++ +W V Sbjct: 24 GDFIFDLGQDELIH-HHSRAITKLEPQVSQLLHLFVTHPAEVLSKEYLQDTLWPN--TIV 80 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126 N+LYQ ++ IRR + I T+P++G+ + N D+ +N Sbjct: 81 EQNSLYQLLTKIRRLLNDSSRSPQ-YIKTLPKKGYCFIAPVTRYNPQAKPINDSVINNTN 139 Query: 127 PAI 129 + Sbjct: 140 VSE 142 >UniRef50_C9QI56 Cholera toxin transcriptional activator n=2 Tax=Vibrio RepID=C9QI56_VIBOR Length = 232 Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 6/156 (3%) Query: 5 INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64 IND L + L + L + E + + +W ++G+ Sbjct: 22 INDKYILNVLTGILEERKSGVKT-ALGSNEVALLQFMTEHSRTPLEKARLLDEIWFKKGV 80 Query: 65 RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI--QNHVINSSTDAHT 122 V ++L ++SI R+ D +I T+ G++ + D++ S TD Sbjct: 81 VVEESSLLHSVSICRKAL---DDRNGEIITTIRGVGYQFNGDVSSYQSPSTQPSLTDTQD 137 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLI 158 K N Y + + + I + + Sbjct: 138 VAPLTIKKANTRYLAAFSASALAAYFLYGAISTPWV 173 >UniRef50_Q9RFS1 Transmembrane regulatory protein ToxR (Fragment) n=1 Tax=Grimontia hollisae RepID=Q9RFS1_VIBHO Length = 193 Score = 64.8 bits (156), Expect = 3e-09, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 17/165 (10%) Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQN-------HV 113 E+G V ++L Q+IS +R+ + + + TVP+RG+++ + + N Sbjct: 1 EQGFEVDDSSLTQSISTLRKSLKDSTKSPM-FVKTVPKRGYQVVCSVEVYNEQEVELPEP 59 Query: 114 INSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILK----HIKSHLIMLSAFVIGAYS 169 S D P + + + K + L ++V + Sbjct: 60 AASVIDETAAKKEPELLSDNTAQTLPLPDAVAEQTEPKVSTNATAPAKMPLGSWVALVLT 119 Query: 170 AYW---LWNNNQPKPFFKDYKTVAEINGCHFN--VTEDTIDGLKE 209 + P P + ++ + I VT I + Sbjct: 120 LLVPLAFQIASNPNPKSEAFREILTIENVPVYIPVTNARISQWQP 164 >UniRef50_A2PNS6 Putative transcriptional regulator ToxR n=1 Tax=Vibrio cholerae MZO-3 RepID=A2PNS6_VIBCH Length = 253 Score = 64.4 bits (155), Expect = 3e-09, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 70/194 (36%), Gaps = 7/194 (3%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 + IND + +++I+ + ++ L L++ ++V++++ + W Sbjct: 4 KYGINDFVL-DEARQRIINSTDGSYG-KISPHEFLVLLELIKKSGEIVSKEELLQKGWPN 61 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH--NDINIQNHVINSSTD 119 V N+L Q I +R + +I T+ ++G+ I+ + + I + +++ Sbjct: 62 R--VVSENSLSQAIKNLRLLLKD-NSKEQRVIKTIAKKGYLINSMSVVQITDENYDNAIL 118 Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179 + + + + + K IK + S S + N Sbjct: 119 INKEHNKNRNIGMSILILLLITTIFNVFWVTKKIKDKFFLDSNIQYPTLSYHRQKINIYS 178 Query: 180 KPFFKDYKTVAEIN 193 + + Y +N Sbjct: 179 ENYNLSYALGERLN 192 >UniRef50_Q01QR8 Transcriptional regulator, CadC n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01QR8_SOLUE Length = 276 Score = 64.0 bits (154), Expect = 4e-09, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 4/97 (4%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 +F P R+L V L ++ L LLL + ++V + T +W + + Sbjct: 13 GAFDFDPLTRQLRREGTP---VRLQPQPAQVLGLLLASPGEIVTRDTLRTALWGTQTVVD 69 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103 L ++ IR D+ I T+P+RG++ Sbjct: 70 FDRGLNFCVAQIRLALGDSSDSPR-YIKTLPKRGYQF 105 >UniRef50_C4Z6V6 Two-component system, OmpR family, response regulator n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z6V6_EUBE2 Length = 233 Score = 64.0 bits (154), Expect = 4e-09, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%) Query: 19 ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78 SV +AD + ++ L +L+ +V + FF ++W+ G V NTL +S + Sbjct: 147 KSVTHADKQICVSPTEFHVLEILINNKGLIVRRDTFFQKMWDRYGTFVEDNTLTVTVSRL 206 Query: 79 RRGFRAVGDTTHSLIATVPRRGFK 102 + + + I T+ G++ Sbjct: 207 KTKLGNR-EDGRAYIETIRGIGYR 229 >UniRef50_Q1YYT7 Putative uncharacterized protein n=3 Tax=Photobacterium RepID=Q1YYT7_PHOPR Length = 431 Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 7/122 (5%) Query: 8 NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 +I + P L S AD L L+ L+E + V + + W + V Sbjct: 12 DICYVPSLGILKS---ADSTQKLNLSEQYILAYLIENYGRPVTKNELLKAGWPDR--IVT 66 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPP 127 +L+Q I +R + +I T+PR G+++ + + + ++ + A++ Sbjct: 67 EASLFQVIRALRVKLHE--EKKGDIIETLPRVGYQVRDFVREEVNLNTTVKLANSDKKKS 124 Query: 128 AI 129 + Sbjct: 125 PL 126 >UniRef50_B1T3M3 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T3M3_9BURK Length = 934 Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 6/148 (4%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + +P+ R+L D + A LSLL+ +VV+Q++F +VW G V Sbjct: 12 GSFRLYPDERRL---ERGDEIAEIGNRAFDILSLLVHRPGEVVSQKEFQEKVWP--GSVV 66 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126 L I+ +R+ ++H I ++ RG+ + ++ +A + Sbjct: 67 GDVNLRVQITALRKLLSEDAASSHG-IRSITGRGYCFVGPVTYTTLNNTAAAEALGDASN 125 Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIK 154 + + + K L I Sbjct: 126 DISNLIGRRTAIEDICRLLSTKGLVSIV 153 >UniRef50_C5AMC0 Transcriptional regulator, winged helix family protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5AMC0_BURGB Length = 956 Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 6/91 (6%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 + V L A L +L A +V + +W + V NTL ++S +RR Sbjct: 26 LRENGSAVRLGARAFAILEMLAAADGRLVTKDALLDAIWPD--TFVEENTLQVHLSALRR 83 Query: 81 GFRAVGDTTHSLIATVPRRGFKIHNDINIQN 111 I TVP RG+++ + Sbjct: 84 ALGD----QRDCIMTVPGRGYRLVRRAAAEP 110 >UniRef50_C6AVM9 Response regulator receiver protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AVM9_RHILS Length = 277 Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 13/161 (8%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 P R+L+ + A L +LL + +V++ + VW M V Sbjct: 38 GRFCAIPHSRQLLLDGRPHE---IGGRAFDLLMVLLRSNGRIVSKDEILNEVWP--SMVV 92 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH--- 123 L + +RR + G ++I T+ RRG+ + D + + + T T Sbjct: 93 EECNLRFQVKSLRRALGSQG----NMIKTIVRRGYMLIRDDVVPDDEVRFDTTRLTTISG 148 Query: 124 -NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAF 163 + P A+K A Y I ++ I ++S + +++F Sbjct: 149 IDTPAAVKAAAPYIALIEDDESVRRSISTLLRSVGLGVASF 189 >UniRef50_B2SNG2 Transcriptional regulatory protein, C terminal n=8 Tax=Xanthomonas RepID=B2SNG2_XANOP Length = 772 Score = 64.0 bits (154), Expect = 5e-09, Method: Composition-based stats. Identities = 17/118 (14%), Positives = 44/118 (37%), Gaps = 2/118 (1%) Query: 25 DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84 + + L + L L VV ++ VW + + + Q ++ +R+ F + Sbjct: 15 ERPLRLAPKSLAVLLALARQPGQVVTREQLLAEVWPD--TLPTNDVVTQAVTQLRKAFAS 72 Query: 85 VGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGA 142 G I T+ + G+++ + + H S+T + ++ ++ + Sbjct: 73 HGGQRSEHIETIAKTGYRLMAAVVWEAHAPGSTTLPQESPGVQSPELAQADDGAVPAS 130 >UniRef50_A6Q830 Two-component response regulator n=5 Tax=Epsilonproteobacteria RepID=A6Q830_SULNB Length = 223 Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 10/102 (9%) Query: 5 INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64 I++NI + ++ +LI +V L SR L L ++ +V+A + + +W + Sbjct: 131 IDENISYDSKNGELII---DGESVSLGNKESRLLKLFVKKEGEVLAHERIYEHLW-DYDE 186 Query: 65 RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 L I +R+ I ++ ++G+K Sbjct: 187 EPSDTALRTYIKNLRK------IIGKDRIVSIKKQGYKFTAK 222 >UniRef50_A3WEA4 Adenylate cyclase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WEA4_9SPHN Length = 775 Score = 63.7 bits (153), Expect = 6e-09, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 12/148 (8%) Query: 17 KLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNIS 76 L + D +L + L L ++++ D R W+ G V ++ + IS Sbjct: 37 SLRRITGPDGERMLEPKVMQVLIALSSPVGTILSRDDLIDRCWD--GRVVGDTSINRVIS 94 Query: 77 IIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYK 136 I+R G R V +++ VP+ G++I V+ + D P + Sbjct: 95 ILRTGLREVAG-DAAVVENVPKVGYRI---------VVREAPDDVLEKPAPDVIEQPTKP 144 Query: 137 ESIGGAKNFNNKILKHIKSHLIMLSAFV 164 + + N+ I + + + A V Sbjct: 145 KVAATRRLQANRRATIIIAGALAVLALV 172 >UniRef50_A4C973 Putative transcriptional regulator n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C973_9GAMM Length = 713 Score = 63.7 bits (153), Expect = 6e-09, Method: Composition-based stats. Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 6/155 (3%) Query: 19 ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78 + ++D+ L + + LS L + + + VW + V N +Y+ IS + Sbjct: 19 CLLTSSDIEKELDPLSYKLLSYFLACGNKITTRDELAEHVWGQR--YVDDNAIYRAISEL 76 Query: 79 RRGFRAVGDTTHSLIATVPRRGFKIHNDINI---QNHVINSSTDAHTHNAPPAIKVNAGY 135 R+ D T I T ++G+ ++ + + D + V A Sbjct: 77 RKHLHHP-DYTQPFIKTHHKKGYSFTARVSAHHQEPLLNEVINDLPANIELLEQSVLANE 135 Query: 136 KESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSA 170 E + K+ + + + L+ + G +++ Sbjct: 136 PELVAVKKSSMQRYVVAGFAFLLCIGVLAWGIFAS 170 >UniRef50_A8H9X2 Transcriptional regulator, CadC n=2 Tax=Shewanella RepID=A8H9X2_SHEPA Length = 413 Score = 63.7 bits (153), Expect = 7e-09, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 5/78 (6%) Query: 26 LNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAV 85 + L+ + L L+L+ ++ ++ W + V ++L Q IS++R+ Sbjct: 25 SRIELSFAETAVLQLMLKHQGTLITREALLEAGWHDR--VVSASSLQQCISVLRKKLANY 82 Query: 86 GDTTHSLIATVPRRGFKI 103 + + T+PR G+ + Sbjct: 83 PEVE---LKTIPRHGYVL 97 >UniRef50_A1TS46 Transcriptional regulator domain protein n=2 Tax=Acidovorax RepID=A1TS46_ACIAC Length = 531 Score = 63.7 bits (153), Expect = 7e-09, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 8/101 (7%) Query: 25 DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84 V L A L L+ +V + + F +VW GM V N L ++S +R+ Sbjct: 44 GCPVALGARAFDVLCTLVHRAGTLVTKSELFRQVWP--GMVVEENNLQVHVSALRK---- 97 Query: 85 VGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125 I T+P +G++ + + A +A Sbjct: 98 --LVGADRIVTIPGQGYRFVGRVAGPPEPGQEAARAPLPDA 136 >UniRef50_C8WHB5 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=C8WHB5_EGGLE Length = 223 Score = 63.3 bits (152), Expect = 7e-09, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 1/84 (1%) Query: 19 ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78 V A ++ LT R L L ++ +V ++ +W+ G V NTL + + Sbjct: 138 ACVRKAGRDLALTALEYRLLLLFAQSRGKLVTREHVRNAIWDSAGEYVSDNTLSVYVKRL 197 Query: 79 RRGFRAVGDTTHSLIATVPRRGFK 102 R LI TV G++ Sbjct: 198 RDKVED-DPAEPRLILTVRGLGYR 220 >UniRef50_C4U9W3 Transcriptional regulator n=1 Tax=Yersinia aldovae ATCC 35236 RepID=C4U9W3_YERAL Length = 265 Score = 63.3 bits (152), Expect = 8e-09, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 8/128 (6%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 +IIN + + L + +S+LLE +++++ T VW+ Sbjct: 31 YIINHWSI-DLTSGFITHQVTQEQK-RLGEYQLKLISVLLEHAGQILSREQLTTLVWKRR 88 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 + N+L I +R + +I T+P+ G+ + +I S +A Sbjct: 89 --VIGNNSLPNAIHTLRMALDD-KNKQQRIIQTIPKMGYLLDTSF---CELIEKSAEAEL 142 Query: 123 HNAPPAIK 130 + + Sbjct: 143 ESPTEPMT 150 >UniRef50_B1LHR8 Lateral flagellar transmembrane regulator LafZ n=7 Tax=Enterobacteriaceae RepID=B1LHR8_ECOSM Length = 297 Score = 63.3 bits (152), Expect = 8e-09, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 8/178 (4%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 II +N P LI + L L L + V+++ VW+ Sbjct: 20 IIINNWRMDPSLNALIHCETGETR-RLGEYHFILLETLAKNADVVLSRSYLCAEVWKNR- 77 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 V N+L I +R G ++I T+P++G+ + + + S+ A Sbjct: 78 -IVGGNSLPTAIHALRVAIDDDG-KQQNIIKTIPKKGYLCNKEYV----SLPESSPAEAL 131 Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 I+ A + S K K + + + IG+ Y + P Sbjct: 132 IITDQIQDTAPEEISSTTPPVPVRKKHKGLMGLALTAAVIFIGSTVGYSHLKSTPDAP 189 >UniRef50_A8UMD4 Two-component system response regulator n=2 Tax=Flavobacteriales RepID=A8UMD4_9FLAO Length = 298 Score = 63.3 bits (152), Expect = 8e-09, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 9/99 (9%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + F+PE KL+ + L+ L+L + ++ + + RVWE+ G+ V Sbjct: 206 GSFYFYPEQNKLV---KEAEEIALSKKECELLALFVANPNQIIKRDELTKRVWEDNGVFV 262 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIAT-VPRRGFKIH 104 + L IS +R+ RA S+ T V G+K+ Sbjct: 263 GRS-LDTYISKLRKKLRA----DSSIKLTNVHGVGYKLE 296 >UniRef50_C6IXU0 Transcriptional regulator domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXU0_9BACL Length = 265 Score = 63.3 bits (152), Expect = 8e-09, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 2/91 (2%) Query: 15 HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74 RK ++V+ + + LT L LLE V+++++ + VW +N + + Sbjct: 177 DRKKMTVYRGGIKIELTKTEFELLIKLLEHEGTVLSREELLSEVWGTT-FLGGSNVVDVH 235 Query: 75 ISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 I +R+ + + I TV G+++ + Sbjct: 236 IKSLRKKLGD-NASRPTYITTVRGVGYRLAD 265 >UniRef50_C7R8I4 Transcriptional regulator, CadC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R8I4_KANKD Length = 217 Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 5/98 (5%) Query: 12 WPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTL 71 P +L + L + L L E ++V + F VW G+ + + + Sbjct: 17 DPALNQLSI---DEKIFELEPKVMQVLVCLNEHAGELVTKDTLFEEVW--HGVSISDDAI 71 Query: 72 YQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI 109 Y +IS +R+ FR V + + T+ R+G+ ++N+ + Sbjct: 72 YCSISKLRKTFRQVAEHRSPELKTIARQGYMLYNNPSY 109 >UniRef50_UPI00016A77BF transcriptional regulator, putative n=1 Tax=Burkholderia oklahomensis EO147 RepID=UPI00016A77BF Length = 170 Score = 63.3 bits (152), Expect = 9e-09, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 18/168 (10%) Query: 19 ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78 +S++ D LT + LS+L++ V +Q +VW +G+ V + +Q I + Sbjct: 1 MSIYRKDNITRLTPNETELLSILMKG---TVRKQAVIEQVWGSKGLVVADGSYHQLIRTL 57 Query: 79 RRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHV--------INSSTDAHTHNAPPAIK 130 R D + I T+PR G K I + TD + Sbjct: 58 RVKLAEQ-DLASNTIKTLPRLGLKFVGTIEFLADFPAVDAVQYPTAQTDLPPNRNITDSS 116 Query: 131 VNAGYKESIGGAKNFNNKILK------HIKSHLIMLSAFVIGAYSAYW 172 V G ++ N K +K HI L+ML +F ++ Sbjct: 117 VTNVPPHEKYGYQSTNFKFIKKNVHRHHIFYLLVMLLSFSFIIFTYLI 164 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q46942 Uncharacterized protein yqeI n=36 Tax=Enterobact... 251 2e-65 UniRef50_B4SXG5 Transcriptional regulatory protein, C n=31 Tax=S... 221 3e-56 UniRef50_B7LP57 Putative regulatory protein n=2 Tax=Enterobacter... 213 6e-54 UniRef50_A6T554 Putative sensory transducer n=1 Tax=Klebsiella p... 206 9e-52 UniRef50_UPI0001826357 putative regulatory protein n=1 Tax=Enter... 186 9e-46 UniRef50_UPI0001C33D1D hypothetical protein CATC2_20487 n=1 Tax=... 168 2e-40 UniRef50_UPI000182700F transcriptional regulatory protein, C n=1... 167 3e-40 UniRef50_C6UPQ2 Predicted protein n=12 Tax=Escherichia coli O157... 161 2e-38 UniRef50_C1MAT2 Predicted protein n=2 Tax=Citrobacter RepID=C1MA... 161 2e-38 UniRef50_C4SC03 Transcriptional regulatory protein n=2 Tax=Yersi... 159 1e-37 UniRef50_B3INB4 Transcriptional regulatory protein, C n=2 Tax=En... 157 3e-37 UniRef50_C4UJG3 Transcriptional regulator n=1 Tax=Yersinia rucke... 157 5e-37 UniRef50_C4SUH9 Putative uncharacterized protein n=1 Tax=Yersini... 156 8e-37 UniRef50_B2VGK3 Putative transcriptional regulator n=1 Tax=Erwin... 151 3e-35 UniRef50_C4SF84 DNA-binding winged-HTH domains n=1 Tax=Yersinia ... 150 6e-35 UniRef50_A0KHX7 Transcriptional regulatory protein, C terminal n... 149 1e-34 UniRef50_C4T6D4 DNA-binding winged-HTH domains n=1 Tax=Yersinia ... 148 2e-34 UniRef50_C1MDX4 Putative uncharacterized protein n=1 Tax=Citroba... 148 2e-34 UniRef50_P15795 Cholera toxin transcriptional activator n=121 Ta... 148 2e-34 UniRef50_B5FBZ3 Toxin transcriptional activator ToxR n=3 Tax=Vib... 144 2e-33 UniRef50_C7BJK4 Putative membrane protein n=1 Tax=Photorhabdus a... 144 3e-33 UniRef50_Q2NSQ9 Putative uncharacterized protein n=1 Tax=Sodalis... 143 7e-33 UniRef50_D2YQP0 Transmembrane regulatory protein ToxR n=7 Tax=Vi... 140 4e-32 UniRef50_A8GBW4 Transcriptional regulator, CadC n=1 Tax=Serratia... 140 5e-32 UniRef50_B2D6Y9 ToxR n=2 Tax=Vibrio cholerae RepID=B2D6Y9_VIBCH 137 4e-31 UniRef50_A8GL29 Transcriptional regulator, CadC n=2 Tax=Serratia... 137 5e-31 UniRef50_A8GJD8 Transcriptional regulator, CadC n=1 Tax=Serratia... 136 7e-31 UniRef50_C4SV61 Putative uncharacterized protein n=1 Tax=Yersini... 135 2e-30 UniRef50_Q9RHQ9 Transmembrane regulatory protein ToxR n=2 Tax=Gr... 134 4e-30 UniRef50_C4T4W9 DNA-binding winged-HTH domains n=1 Tax=Yersinia ... 134 4e-30 UniRef50_C2LLY1 Regulatory protein n=9 Tax=Enterobacteriaceae Re... 133 8e-30 UniRef50_C9PH99 Putative uncharacterized protein n=1 Tax=Vibrio ... 132 2e-29 UniRef50_A8AP73 Putative uncharacterized protein n=1 Tax=Citroba... 131 2e-29 UniRef50_Q1Z5R8 Transcription activator ToxR n=4 Tax=Photobacter... 130 4e-29 UniRef50_B2VDV6 Putative transcriptional regulatory protein n=1 ... 130 4e-29 UniRef50_C4UHM9 Transcriptional regulatory protein, C n=1 Tax=Ye... 130 4e-29 UniRef50_D0XFV2 Putative uncharacterized protein n=1 Tax=Vibrio ... 129 8e-29 UniRef50_D2TQU5 Putative transcriptional regulator n=2 Tax=Enter... 128 2e-28 UniRef50_D0ZEM9 Putative uncharacterized protein n=1 Tax=Edwards... 127 4e-28 UniRef50_D2T558 Protein rcaC n=3 Tax=Erwinia RepID=D2T558_ERWPY 126 7e-28 UniRef50_A3USG7 Cholera toxin transcriptional activator n=1 Tax=... 125 1e-27 UniRef50_C4SZK7 Putative uncharacterized protein n=1 Tax=Yersini... 124 4e-27 UniRef50_D0YZ11 Transcriptional activator ToxR n=1 Tax=Photobact... 123 7e-27 UniRef50_C9QE85 Putative uncharacterized protein n=1 Tax=Vibrio ... 121 2e-26 UniRef50_A5L3N2 DNA-binding transcriptional activator n=2 Tax=Vi... 121 3e-26 UniRef50_A8GL31 Transcriptional regulator, CadC n=1 Tax=Serratia... 118 2e-25 UniRef50_A1JPG4 Possible reguatory protein n=5 Tax=Yersinia RepI... 117 6e-25 UniRef50_C4SAM2 Possible regulatory protein n=1 Tax=Yersinia mol... 116 6e-25 UniRef50_Q12IZ6 Transcriptional regulatory protein-like protein ... 116 9e-25 UniRef50_C9NME3 Putative transcriptional activator ToxR n=1 Tax=... 116 9e-25 UniRef50_D1RYQ0 Transcriptional regulator, CadC n=1 Tax=Serratia... 115 1e-24 UniRef50_Q5E5W5 Transcriptional regulatory protein n=2 Tax=Vibri... 114 2e-24 UniRef50_A6AKR5 Transcriptional regulatory protein, C n=3 Tax=Vi... 114 3e-24 UniRef50_D2T5X7 Uncharacterized protein yqeI n=2 Tax=Erwinia pyr... 114 3e-24 UniRef50_Q15PB9 Lysine decarboxylase transcriptional regulator, ... 114 4e-24 UniRef50_B2VGZ0 Transcriptional regulatory protein n=1 Tax=Erwin... 114 4e-24 UniRef50_D2TAS4 Cholera toxin transcriptional activator n=2 Tax=... 113 6e-24 UniRef50_Q12S47 Transcriptional regulatory protein-like protein ... 113 7e-24 UniRef50_B6XAC7 Putative uncharacterized protein n=2 Tax=Provide... 113 7e-24 UniRef50_Q1IIR6 Transcriptional regulatory protein-like n=1 Tax=... 112 1e-23 UniRef50_B4SI58 Transcriptional regulator domain protein n=3 Tax... 112 1e-23 UniRef50_A6XSQ7 ToxR2 n=9 Tax=Vibrio RepID=A6XSQ7_VIBCH 112 1e-23 UniRef50_A5L317 Putative uncharacterized protein n=1 Tax=Vibrion... 112 1e-23 UniRef50_B2VCE9 Probable transcriptional regulator n=1 Tax=Erwin... 112 2e-23 UniRef50_B4EUN0 Putative membrane protein n=2 Tax=Proteus mirabi... 111 2e-23 UniRef50_Q1YZ13 Transcriptional activator CadC n=1 Tax=Photobact... 111 2e-23 UniRef50_P23890 Transcriptional activator cadC n=99 Tax=Enteroba... 111 2e-23 UniRef50_Q21GQ2 Transcriptional regulatory protein-like protein ... 111 3e-23 UniRef50_Q47YD8 Putative transcriptional regulator n=1 Tax=Colwe... 110 5e-23 UniRef50_C1M6R9 Predicted protein n=2 Tax=Citrobacter RepID=C1M6... 110 5e-23 UniRef50_C9PHD6 Transcriptional activator ToxR n=1 Tax=Vibrio fu... 110 5e-23 UniRef50_D0YIE0 Transcriptional regulator, CadC n=6 Tax=Klebsiel... 110 6e-23 UniRef50_B1KKU4 Transcriptional regulator, CadC n=1 Tax=Shewanel... 110 6e-23 UniRef50_D0XI00 Putative uncharacterized protein n=1 Tax=Vibrio ... 110 6e-23 UniRef50_B3PJR7 Putative Transcriptional regulator CadC n=1 Tax=... 109 1e-22 UniRef50_B2VJM5 Probable transcriptional regulator n=1 Tax=Erwin... 108 2e-22 UniRef50_D0I6A9 Putative transcriptional activator ToxR n=1 Tax=... 108 3e-22 UniRef50_Q2S7R1 DNA-binding winged-HTH domains n=1 Tax=Hahella c... 108 3e-22 UniRef50_Q1IKQ5 Lysine decarboxylase transcriptional regulator, ... 107 3e-22 UniRef50_UPI00018266EF transcriptional regulator, CadC n=1 Tax=E... 107 3e-22 UniRef50_C9QI52 Cholera toxin transcriptional activator n=1 Tax=... 107 3e-22 UniRef50_B8CR40 Transcriptional activator CadC n=1 Tax=Shewanell... 107 4e-22 UniRef50_Q1Z6V5 Putative uncharacterized protein n=1 Tax=Photoba... 107 4e-22 UniRef50_C0Q6W1 Possible transmembrane regulator n=32 Tax=Entero... 107 4e-22 UniRef50_A4XNQ3 Transcriptional regulator, CadC n=1 Tax=Pseudomo... 107 5e-22 UniRef50_Q7VR33 Transcriptional regulatory protein, C terminal d... 107 5e-22 UniRef50_D2T7N3 Probable regulatory protein embR n=3 Tax=Erwinia... 107 6e-22 UniRef50_A6CVT0 Putative uncharacterized protein n=1 Tax=Vibrio ... 106 7e-22 UniRef50_Q1IHU2 Lysine decarboxylase transcriptional regulator, ... 106 8e-22 UniRef50_B7VRN4 Putative uncharacterized protein n=2 Tax=Vibrio ... 105 1e-21 UniRef50_B2Q575 Putative uncharacterized protein n=1 Tax=Provide... 105 1e-21 UniRef50_C3NSU2 Transcriptional activator of cad operon n=39 Tax... 105 2e-21 UniRef50_Q1IIZ5 Transcriptional regulatory protein-like n=1 Tax=... 105 2e-21 UniRef50_A4YSP3 Putative uncharacterized protein n=1 Tax=Bradyrh... 105 2e-21 UniRef50_D2A9T6 Transcriptional regulator, CadC n=3 Tax=Shigella... 105 2e-21 UniRef50_Q1ITK1 Lysine decarboxylase transcriptional regulator, ... 104 2e-21 UniRef50_B2JV11 Transcriptional regulator, winged helix family n... 104 3e-21 UniRef50_A4CYI6 Putative uncharacterized protein n=1 Tax=Synecho... 104 4e-21 UniRef50_UPI000197C3BF transcriptional regulator, CadC n=1 Tax=P... 104 4e-21 UniRef50_Q8D287 YqeI protein n=1 Tax=Wigglesworthia glossinidia ... 104 4e-21 UniRef50_A4X1M5 Two component transcriptional regulator, winged ... 104 4e-21 UniRef50_B9TBN5 Putative uncharacterized protein n=1 Tax=Ricinus... 103 5e-21 UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 T... 103 6e-21 UniRef50_B7RJ24 Putative regulatory protein, possibly two-compon... 103 6e-21 UniRef50_A6CY17 DNA-binding transcriptional activator n=2 Tax=Vi... 103 7e-21 UniRef50_Q89V41 Bll1217 protein n=2 Tax=Bradyrhizobium japonicum... 103 8e-21 UniRef50_B1KAJ7 Transcriptional regulator, winged helix family n... 103 8e-21 UniRef50_A5VGJ6 Transcriptional regulator, CadC n=1 Tax=Sphingom... 102 1e-20 UniRef50_A4SQG5 Transcriptional activator CadC n=2 Tax=Aeromonas... 102 1e-20 UniRef50_C9NXT9 Cholera toxin transcriptional activator n=2 Tax=... 102 1e-20 UniRef50_B2JV05 Transcriptional regulator, winged helix family n... 102 1e-20 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 102 1e-20 UniRef50_C9Y6H6 Putative uncharacterized protein n=1 Tax=Curviba... 102 1e-20 UniRef50_A4FNN5 Response regulator, two-component system n=12 Ta... 102 1e-20 UniRef50_Q67JF4 Two-component response regulator n=1 Tax=Symbiob... 102 1e-20 UniRef50_Q2SHD7 Probable transcriptional regulator n=1 Tax=Hahel... 102 1e-20 UniRef50_A1S359 Putative transcriptional regulator, CadC n=1 Tax... 102 2e-20 UniRef50_A6D0K2 Putative uncharacterized protein n=1 Tax=Vibrio ... 102 2e-20 UniRef50_Q1AZL3 Two component transcriptional regulator, winged ... 102 2e-20 UniRef50_B5R4U2 Possible transmembrane regulator n=37 Tax=Entero... 102 2e-20 UniRef50_C6IXU0 Transcriptional regulator domain-containing prot... 102 2e-20 UniRef50_Q12K29 Transcriptional regulatory protein-like protein ... 101 2e-20 UniRef50_Q1ZPR1 Transcriptional activator CadC n=1 Tax=Photobact... 101 2e-20 UniRef50_A6F962 Putative uncharacterized protein n=1 Tax=Moritel... 101 2e-20 UniRef50_D1TLX7 Transcriptional regulator, winged helix family n... 101 3e-20 UniRef50_C2HYC0 Transcriptional activator ToxR n=1 Tax=Vibrio ch... 101 3e-20 UniRef50_Q1ZVU4 Putative uncharacterized protein n=1 Tax=Photoba... 101 3e-20 UniRef50_C5EUU3 Two-component response regulator n=5 Tax=Bacteri... 101 3e-20 UniRef50_A8SVV6 Putative uncharacterized protein n=1 Tax=Coproco... 100 3e-20 UniRef50_A6UHF5 Transcriptional regulator domain protein n=13 Ta... 100 4e-20 UniRef50_Q988M4 Mll6677 protein n=1 Tax=Mesorhizobium loti RepID... 100 4e-20 UniRef50_B5CLM3 Putative uncharacterized protein n=1 Tax=Ruminoc... 100 4e-20 UniRef50_C5B7S6 Transcriptional activator CadC n=2 Tax=Enterobac... 100 4e-20 UniRef50_C0CI50 Putative uncharacterized protein n=1 Tax=Blautia... 100 5e-20 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 100 5e-20 UniRef50_Q3KEV5 Putative transcriptional regulator n=2 Tax=Pseud... 100 5e-20 UniRef50_C5AMC0 Transcriptional regulator, winged helix family p... 100 5e-20 UniRef50_Q2C5Y8 Putative uncharacterized protein n=2 Tax=Photoba... 100 5e-20 UniRef50_Q3AVF0 Response regulator receiver domain protein (CheY... 100 7e-20 UniRef50_A8T8X6 Putative transcriptional regulator ToxR n=3 Tax=... 100 7e-20 UniRef50_B6FMI5 Putative uncharacterized protein n=7 Tax=Clostri... 100 9e-20 UniRef50_Q182M4 Two-component response regulator n=14 Tax=Clostr... 100 9e-20 UniRef50_Q2T8V0 Transcriptional regulator, putative n=9 Tax=pseu... 100 9e-20 UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax... 99 1e-19 UniRef50_B6EJP4 Putative uncharacterized protein n=1 Tax=Aliivib... 99 1e-19 UniRef50_B1J1E8 Two component transcriptional regulator, LuxR fa... 99 1e-19 UniRef50_B6EKJ8 Putative transcriptional regulator n=1 Tax=Aliiv... 99 1e-19 UniRef50_D1VIP6 Two component transcriptional regulator, winged ... 99 1e-19 UniRef50_Q987X1 Transcriptional regulator n=1 Tax=Mesorhizobium ... 99 1e-19 UniRef50_B1M5U0 Transcriptional regulator domain protein n=3 Tax... 99 1e-19 UniRef50_B0G6G3 Putative uncharacterized protein n=2 Tax=Lachnos... 99 1e-19 UniRef50_A5L4K5 Putative uncharacterized protein n=1 Tax=Vibrion... 99 1e-19 UniRef50_A5P8P2 Transcription activator ToxR n=1 Tax=Erythrobact... 99 1e-19 UniRef50_D0X6S7 Putative uncharacterized protein n=1 Tax=Vibrio ... 99 1e-19 UniRef50_B1KWY3 DNA-binding response regulator n=33 Tax=Firmicut... 99 1e-19 UniRef50_Q2NVH3 Putative uncharacterized protein n=1 Tax=Sodalis... 99 1e-19 UniRef50_B1JQB0 Transcriptional regulator, CadC n=18 Tax=Yersini... 99 1e-19 UniRef50_Q03AM3 DNA-binding response regulator, OmpR family (Rec... 99 2e-19 UniRef50_C5ZZN9 Putative uncharacterized protein n=1 Tax=Escheri... 99 2e-19 UniRef50_Q5E341 DNA-binding transcriptional activator CadC n=9 T... 99 2e-19 UniRef50_A5KUS7 DNA-binding transcriptional activator n=1 Tax=Vi... 99 2e-19 UniRef50_B2T985 Transcriptional regulator, winged helix family n... 98 2e-19 UniRef50_A5ED47 Transcriptional regulator n=1 Tax=Bradyrhizobium... 98 2e-19 UniRef50_B1XXD9 Two component transcriptional regulator, winged ... 98 3e-19 UniRef50_Q12T20 Two component transcriptional regulator, winged ... 98 3e-19 UniRef50_C7RA75 Transcriptional regulator, CadC n=1 Tax=Kangiell... 98 3e-19 UniRef50_A3D2S0 Transcriptional regulator, CadC n=3 Tax=Shewanel... 98 3e-19 UniRef50_D2TJ93 Lateral flagellar transmembrane regulator n=1 Ta... 98 3e-19 UniRef50_Q2C702 Putative uncharacterized protein n=1 Tax=Photoba... 98 3e-19 UniRef50_B5WFU1 Transcriptional regulator, winged helix family n... 98 3e-19 UniRef50_C6LC42 DNA-binding response regulator RegX3 n=3 Tax=Clo... 98 3e-19 UniRef50_Q12RS3 Transcriptional regulatory protein-like protein ... 98 3e-19 UniRef50_Q0HTC3 Lysine decarboxylase transcriptional regulator, ... 98 4e-19 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 97 4e-19 UniRef50_B2SNG2 Transcriptional regulatory protein, C terminal n... 97 4e-19 UniRef50_Q6LJ01 Putative uncharacterized protein n=2 Tax=Photoba... 97 4e-19 UniRef50_C6D5Y8 Putative two component transcriptional regulator... 97 4e-19 UniRef50_B1T3M3 Transcriptional regulator, winged helix family n... 97 4e-19 UniRef50_B1KFP5 Transcriptional regulator, CadC n=1 Tax=Shewanel... 97 4e-19 UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC... 97 5e-19 UniRef50_A3EHX3 Putative transcriptional regulator ToxR n=6 Tax=... 97 5e-19 UniRef50_C6AVM9 Response regulator receiver protein n=1 Tax=Rhiz... 97 5e-19 UniRef50_A5N5X6 Transcriptional regulator n=5 Tax=Clostridium Re... 97 6e-19 UniRef50_B6FSP5 Putative uncharacterized protein n=1 Tax=Clostri... 97 6e-19 UniRef50_C7BJM7 Putative uncharacterized protein n=1 Tax=Photorh... 97 6e-19 UniRef50_B1YN09 Transcriptional regulator, winged helix family n... 97 6e-19 UniRef50_A6X2C4 Two component transcriptional regulator, winged ... 97 6e-19 UniRef50_C6D9U3 Transcriptional regulator, CadC n=5 Tax=Pectobac... 97 6e-19 UniRef50_C8WHB5 Two component transcriptional regulator, winged ... 97 7e-19 UniRef50_D1C5Q5 Two component transcriptional regulator, winged ... 97 7e-19 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 97 7e-19 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 97 7e-19 UniRef50_B5VUJ9 Two component transcriptional regulator, winged ... 97 7e-19 UniRef50_A7B4Z9 Putative uncharacterized protein n=2 Tax=Ruminoc... 97 7e-19 UniRef50_A4C7M7 TolB domain protein n=1 Tax=Pseudoalteromonas tu... 97 8e-19 UniRef50_C0A842 Response regulator receiver protein n=5 Tax=Bact... 96 9e-19 UniRef50_Q1MMK4 Putative transcriptional regulator n=1 Tax=Rhizo... 96 1e-18 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 96 1e-18 UniRef50_C7MMC5 Response regulator with CheY-like receiver domai... 96 1e-18 UniRef50_C6HXQ3 Two component transcriptional regulator, winged ... 96 1e-18 UniRef50_B8ESP8 Transcriptional regulator domain protein n=4 Tax... 96 1e-18 UniRef50_Q1MK68 Putative adenylate cyclase n=1 Tax=Rhizobium leg... 96 2e-18 UniRef50_B1KA17 Transcriptional regulator, winged helix family n... 96 2e-18 UniRef50_Q2C4S0 Putative uncharacterized protein n=1 Tax=Photoba... 96 2e-18 UniRef50_B9YAL6 Putative uncharacterized protein n=1 Tax=Holdema... 96 2e-18 Sequences not found previously or not previously below threshold: UniRef50_C6LEL9 DNA-binding response regulator RegX3 n=3 Tax=Clo... 103 6e-21 UniRef50_D1C280 Two component transcriptional regulator, winged ... 102 1e-20 UniRef50_Q89XL4 Transcriptional regulator n=1 Tax=Bradyrhizobium... 102 1e-20 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 102 2e-20 UniRef50_Q05943 Transcriptional regulatory protein glnR n=102 Ta... 101 2e-20 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 101 3e-20 UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro... 101 3e-20 UniRef50_Q1AYG8 Two component transcriptional regulator, winged ... 101 3e-20 UniRef50_D1C683 Two component transcriptional regulator, winged ... 100 4e-20 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 100 4e-20 UniRef50_C8WRL2 Two component transcriptional regulator, winged ... 100 6e-20 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 100 7e-20 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 100 9e-20 UniRef50_UPI00017890B9 putative two component transcriptional re... 99 1e-19 UniRef50_Q1IVX4 Two component transcriptional regulator, winged ... 99 1e-19 UniRef50_A5UT44 Two component transcriptional regulator, winged ... 99 2e-19 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 99 2e-19 UniRef50_B5EQN9 Two component transcriptional regulator, winged ... 99 2e-19 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 98 3e-19 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 98 3e-19 UniRef50_C4L1R5 Two component transcriptional regulator, winged ... 98 3e-19 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 98 3e-19 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 98 3e-19 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 98 3e-19 UniRef50_D0MGI0 Two component transcriptional regulator, winged ... 98 4e-19 UniRef50_A3ER20 Putative two component transcriptional regulator... 97 4e-19 UniRef50_C8WRL6 Two component transcriptional regulator, winged ... 97 4e-19 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 97 4e-19 UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteob... 97 5e-19 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 97 7e-19 UniRef50_C4L703 Two component transcriptional regulator, winged ... 97 7e-19 UniRef50_B1XM84 Two-component response regulator n=8 Tax=Cyanoba... 97 8e-19 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 97 8e-19 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 96 9e-19 UniRef50_B7GTW3 Response regulator receiver protein n=6 Tax=Bifi... 96 9e-19 UniRef50_B5JD22 Response regulator receiver domain protein n=1 T... 96 1e-18 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 96 1e-18 UniRef50_D0MIF5 Two component transcriptional regulator, winged ... 96 1e-18 UniRef50_B9L1T3 Phosphate regulatory protein n=1 Tax=Thermomicro... 96 1e-18 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 96 1e-18 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 96 1e-18 UniRef50_B8FQS3 Two component transcriptional regulator, winged ... 96 2e-18 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 96 2e-18 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 96 2e-18 UniRef50_A5UQY1 Two component transcriptional regulator, winged ... 95 2e-18 >UniRef50_Q46942 Uncharacterized protein yqeI n=36 Tax=Enterobacteriaceae RepID=YQEI_ECOLI Length = 269 Score = 251 bits (640), Expect = 2e-65, Method: Composition-based stats. Identities = 269/269 (100%), Positives = 269/269 (100%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE Sbjct: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA Sbjct: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK Sbjct: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG Sbjct: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 Query: 241 MIVMACNKNYNQHEVANCLTLSYREVNRD 269 MIVMACNKNYNQHEVANCLTLSYREVNRD Sbjct: 241 MIVMACNKNYNQHEVANCLTLSYREVNRD 269 >UniRef50_B4SXG5 Transcriptional regulatory protein, C n=31 Tax=Salmonella enterica RepID=B4SXG5_SALNS Length = 254 Score = 221 bits (562), Expect = 3e-56, Method: Composition-based stats. Identities = 109/268 (40%), Positives = 143/268 (53%), Gaps = 15/268 (5%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M WIINDNIEF PE +L S+ DLN++LTTPASRCL LLLE P VV+QQ FF +VWE Sbjct: 1 MLWIINDNIEFNPEMNRLASLSRPDLNIILTTPASRCLRLLLENAPSVVSQQTFFQKVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E+GM V NTLYQNISIIRRG R VG+ +LI TVPRRGF+I ++I + + Sbjct: 61 EDGMVVSANTLYQNISIIRRGLRTVGENEDTLIITVPRRGFQIEPGVSIMTIRKDFAQAI 120 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 P + + KH L M F +G W K Sbjct: 121 EKKGETP---------------PRMSGRWFKHYVPVLWMTGTFAVGILLGTISWQTVPDK 165 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 F+ Y V GCHF + I+ F YK+ IL +G++C+K+PW+YFP + +P Sbjct: 166 DFYDRYTLVETTQGCHFFSRNEDIESGSRFASYKSMILKTGMDCQKYPWVYFPSSSRTPA 225 Query: 241 MIVMACNKNYNQHEVANCLTLSYREVNR 268 + + C + Y C+TL +R V Sbjct: 226 VTALICQQPYKTRGDTGCVTLFFRGVTH 253 >UniRef50_B7LP57 Putative regulatory protein n=2 Tax=Enterobacteriaceae RepID=B7LP57_ESCF3 Length = 307 Score = 213 bits (542), Expect = 6e-54, Method: Composition-based stats. Identities = 126/265 (47%), Positives = 171/265 (64%), Gaps = 1/265 (0%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 MYWIIN+ IEF P +KLIS N +LNVVLT+PASRCL LLLEA PDVV+QQ+ F +VWE Sbjct: 40 MYWIINEFIEFRPASKKLISRRNPELNVVLTSPASRCLLLLLEASPDVVSQQELFKKVWE 99 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 +EGM VPTNTLYQNISI+RRG +AVG+T +LIAT+PR+GFKI + I + Sbjct: 100 DEGMYVPTNTLYQNISIVRRGLKAVGETEQTLIATIPRKGFKIEQGVKIVRMASDEL-FP 158 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 + + ++ + IML AF++GA ++ W++ + Sbjct: 159 EEEQEEEQTGNAEELLLPVNEHQQPRISLMSRLSLVFIMLLAFIVGATGMHFYWHSGETT 218 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 PFF DYK + + NGCHF V +D+ DG F + KT I +G++CKK+PW+Y PL+K+ PG Sbjct: 219 PFFADYKLLEQENGCHFYVKDDSHDGDNNFARIKTLITRTGLDCKKYPWVYLPLSKTDPG 278 Query: 241 MIVMACNKNYNQHEVANCLTLSYRE 265 + V+ C K+Y H V C+TLS+RE Sbjct: 279 LAVLVCKKDYLVHSVPGCMTLSFRE 303 >UniRef50_A6T554 Putative sensory transducer n=1 Tax=Klebsiella pneumoniae subsp. pneumoniae MGH 78578 RepID=A6T554_KLEP7 Length = 274 Score = 206 bits (523), Expect = 9e-52, Method: Composition-based stats. Identities = 115/274 (41%), Positives = 168/274 (61%), Gaps = 5/274 (1%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 MYWIIN NIEFWPE+++LIS+ N +V LT PAS CL LLLEA P++V+QQ FF +VWE Sbjct: 1 MYWIINKNIEFWPENKRLISLKNPAQSVTLTAPASHCLVLLLEATPELVSQQVFFKKVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 +EG+ VP NTLYQNISI+RRG R VG+T +S++ TVPR+GF I+ ++N++ Sbjct: 61 DEGILVPANTLYQNISIVRRGLRDVGETDNSIVVTVPRKGFHINPNVNVERMDKKPLNSE 120 Query: 121 HTHNAP--PAIKVNAGYKESIGG---AKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWN 175 ++ V + G I + LIML + + G S +++W+ Sbjct: 121 SYNDITIISQDDVAEKNPTTEPGDIVQTATRKNIGAKATTFLIMLLSLLAGCLSFHYIWH 180 Query: 176 NNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLA 235 + KPFF Y V GCHF +D + +F+ YK+ I SG++CKK+P++YF ++ Sbjct: 181 FHDEKPFFSSYTLVENDRGCHFYTKDDNHAKVDKFNYYKSLIFKSGLDCKKYPFVYFSMS 240 Query: 236 KSSPGMIVMACNKNYNQHEVANCLTLSYREVNRD 269 + SPG IV C K+Y++ A C+TLS+R + + Sbjct: 241 QMSPGFIVFICRKSYSEKVSAGCVTLSFRGIVYE 274 >UniRef50_UPI0001826357 putative regulatory protein n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI0001826357 Length = 265 Score = 186 bits (471), Expect = 9e-46, Method: Composition-based stats. Identities = 73/266 (27%), Positives = 117/266 (43%), Gaps = 14/266 (5%) Query: 3 WIINDNIEFWPEHRKLISVHN-ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++IND++ F P+ R+L D V+L P S CL LLLE +V+ Q+ F+ VWE+ Sbjct: 5 FLINDSVLFEPDKRRLCPRDGYPDRAVLLHGPVSECLLLLLEHNGEVLTQRYLFSAVWEK 64 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN--IQNHVINSSTD 119 +G V TN LYQ I+ IR+ ++VG +++ TVP+ GFK + I Sbjct: 65 QGAIVTTNALYQTIASIRKALKSVGLA-ENIVQTVPKEGFKAVAALQSGTLEEFILPVAT 123 Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179 A P K F++KI I + L ++S FV+ Sbjct: 124 APKDGQPEEEKAYLPAPVVRPRKSLFSSKIAYGIAALLFLVSCFVL-------YQQLKPG 176 Query: 180 KPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239 F DY + + GC + D ++ +K+ + + + C +Y L Sbjct: 177 DAPFADYHFIGNVEGCDVYSS--LHDKMQSQNKFTSLVKRYPVQCSAGGRVYITLNHYQQ 234 Query: 240 GMIVMACNKNYNQHEVANCLTLSYRE 265 G V+ C+K + A C ++ YRE Sbjct: 235 GTSVIVCDKQADLAG-AQCESILYRE 259 >UniRef50_UPI0001C33D1D hypothetical protein CATC2_20487 n=1 Tax=Citrobacter youngae ATCC 29220 RepID=UPI0001C33D1D Length = 257 Score = 168 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 101/266 (37%), Gaps = 20/266 (7%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++IN +EF P+++ L++ + L PAS C L+ D+V+Q T W E Sbjct: 2 YLINQLVEFNPDNKSLVNRQT-GRTIQLQLPASLCFLYLITHASDIVSQNTLMTVGWGER 60 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 NT YQ I +R VG + T+ RRG +++ + ++ + TD + Sbjct: 61 NNVTTANTFYQAILTLRNALADVG-LPRDTVKTISRRGLRLNENTQVE-----AITDLQS 114 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL-WNNNQPKP 181 +P ++ + I A + I I+ S ++ A WL W +P Sbjct: 115 DVSPLSVIEERAPAKIIPTAPQQPTQ----IAWWNILFSVGIVIATLVIWLVWYQTRPVM 170 Query: 182 FFKDY----KTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKS 237 F + + C + + D F+ + C+ + ++ Sbjct: 171 PFSKFVSVSMQIPSRQNCKIYYSPNEYDQQGYFNLMQLH----PFLCENNKHVFLTGYLK 226 Query: 238 SPGMIVMACNKNYNQHEVANCLTLSY 263 + M+ C+K+ A C T Y Sbjct: 227 AERMVAFVCDKDARTDAHAFCTTHYY 252 >UniRef50_UPI000182700F transcriptional regulatory protein, C n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI000182700F Length = 269 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 73/271 (26%), Positives = 116/271 (42%), Gaps = 14/271 (5%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++IIN+ +EF P L ++N D VVL +PA RCL LL+E +V QQDF VW+ Sbjct: 4 HYIINNIVEFHPAASTLRDINNPDRVVVLNSPAGRCLLLLIERAGSIVTQQDFLDIVWQR 63 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 GM V NT YQNISI+R+G + +G I T+PR G + +D I I Sbjct: 64 RGMLVSPNTYYQNISILRKGLKKIGFDVDP-IVTIPRIGLTLASDTQIV---IKEPATPA 119 Query: 122 THNAPPAIKVNAGYKESIGGAKNFN-------NKILKHIKSHLIMLSAFVIGAYSAYWLW 174 A P V + + +++ + +++ V+ Sbjct: 120 PEMAVPETAVQQDTADLRLNEEPGENALPERDSRLARARWLAGMLMILLVLLMSVGIIGH 179 Query: 175 NNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPL 234 +N + F +DY I CH + + I E K + C +PW+Y Sbjct: 180 SNARENRFIEDYHFATTIGACHVWLAKG-IQTQSERAKALAYVDQFKAECADYPWIYISW 238 Query: 235 AKSSPGMIVMACNKNYNQHEVANCLTLSYRE 265 + P V+ C+K+ + C++ + E Sbjct: 239 YELLPRASVIRCDKSMKE--PNRCISDYFIE 267 >UniRef50_C6UPQ2 Predicted protein n=12 Tax=Escherichia coli O157:H7 RepID=C6UPQ2_ECO5T Length = 270 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 82/275 (29%), Positives = 122/275 (44%), Gaps = 16/275 (5%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIND + F KL S+ ++ + LT PA +CL LLL+ VV+ FF +VW Sbjct: 1 MIYIINDEVRFNSSSNKLTSLLTSEEVI-LTYPAGKCLKLLLDNAYSVVSHNQFFEKVWS 59 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTT--HSLIATVPRRGFKIHNDINIQNHVINSST 118 + V TNTLYQNIS+IRR FR + T + +I TVPR+GFKI+ +I+I N Sbjct: 60 DSSADVATNTLYQNISMIRRSFREISSATIFNDVIRTVPRKGFKINEEISITVLDNN--- 116 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLI-MLSAFVIGAYSAYWLWNNN 177 H N + N + E+I ++ +A+ I S+Y+ Sbjct: 117 --HNENESVESEENGTHTENINKNHIAKGIFTTKNTLLIVCFFAAWGIVYISSYFFDMAF 174 Query: 178 QPKPF-------FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWL 230 Q K F +Y GC + + + ++ INCK HP++ Sbjct: 175 QSKSHTIKKIDAFSNYAQHPTQEGCSYFYDNKYFNSVDMLSPIIEKLQKMEINCKIHPYI 234 Query: 231 YFPLAKSSPGMIVMACNKNYNQHEVANCLTLSYRE 265 Y S G C++ N NC +L Y+ Sbjct: 235 YIATNDSMSGFYAFTCSQMLNSESPNNCNSLYYKA 269 >UniRef50_C1MAT2 Predicted protein n=2 Tax=Citrobacter RepID=C1MAT2_9ENTR Length = 261 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 101/262 (38%), Gaps = 15/262 (5%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++I + I F P + L V + + + L AS CL LL++ VV+Q + W + Sbjct: 9 YLIENRIIFTPATQCLARVDHPNQRIKLKHSASLCLLLLIQHRGQVVSQNELLEFGWGKN 68 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 +V N YQ+I +R+ + LI T+PR+G I + +IQ Sbjct: 69 HRQVSFNAFYQSILSLRKS-LLQLELEQPLITTIPRKGLIIQEEFDIQVIETPEE----- 122 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 ++A + A ++ ++ ++ L+ + W +++ + Sbjct: 123 NSASAEESLAPDATIEEFLADTPRQPLITAAETVMLALTLIICVLILYPWQASDD----Y 178 Query: 183 FKDYKTVAE-INGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGM 241 F Y T + GC + D F ++ I + C+ H ++Y S + Sbjct: 179 FSGYITADKAPTGCQYYFNNDA----SNFTRHTAFIDKNPGLCQSHKFIYITTYPESKKL 234 Query: 242 IVMACNKNYNQHEVANCLTLSY 263 V+ C + C ++ Y Sbjct: 235 SVLVCRSPIKARQENACQSVYY 256 >UniRef50_C4SC03 Transcriptional regulatory protein n=2 Tax=Yersinia RepID=C4SC03_YERMO Length = 281 Score = 159 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 64/272 (23%), Positives = 115/272 (42%), Gaps = 15/272 (5%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 +IIN + F + +L + + L P SRCL LLL+ V++Q +F VWE Sbjct: 7 KFIINGKVCFLSDEHRLEPLGEQGSAISLNVPVSRCLLLLLQRKGSVISQSEFVYEVWES 66 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 +G NT +QNI ++R+ + G S+I TVP+ G + + N + ST Sbjct: 67 KGQFANANTYFQNIHLLRKALKTSGI-EESIIKTVPKEGIRFTGTVTYLNESNSESTAEL 125 Query: 122 THNAPPAIKVNAGYKE----------SIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171 T N I A + A F+++ + +IK ++ + Sbjct: 126 TENETRNIANEASADKQAPDVIDVKMQPPFAPFFSSQKMLYIKIFFVLGLLSIFILLLLN 185 Query: 172 WLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLY 231 + + N+ FF +Y+ + E+N C + +I L +Y + + +C+ Y Sbjct: 186 FHKDTNKNTDFFSNYQLIGEVNQCKVYASNTSI--LWPRSEYLDFVKNKNTSCQPGQVAY 243 Query: 232 FPLAKSSPGMIVMACNKNYNQHEVANCLTLSY 263 + ++ C+K+ + A+CLT Y Sbjct: 244 IAMNIFRTRALIHICDKSVSN--TASCLTKLY 273 >UniRef50_B3INB4 Transcriptional regulatory protein, C n=2 Tax=Enterobacteriaceae RepID=B3INB4_ECOLX Length = 270 Score = 157 bits (398), Expect = 3e-37, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 105/272 (38%), Gaps = 9/272 (3%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++I + + + ++ + ++ L+ PA R L L+ ++ + D +VWE Sbjct: 1 MKYLIELTMLYEVDTGMIMINGEEESSIKLSNPAGRLLYELIINNGKILDRDDLIKKVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + G+ + +L IS IR+ FR +G LI T+ +GF + I + Sbjct: 61 DHGLSGSSVSLNVAISEIRKAFRTLGCAPL-LIKTIRGKGFSLAAHIEHHTVRPPVVSTL 119 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 +A A A K++ + + L L++++ + + + Sbjct: 120 SEQSASEAFDTLAHKKDADPPKQLISLHRLFISLCTLLLITVIGTAVLLLHQRDSYAESL 179 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDG--LKEFDKYKTRILDSGINCKK-HPWLYFPLAKS 237 D + +++ C + + + F+ K I I+C+ +Y+ K Sbjct: 180 K-DSDMYLLGKVDRCTVYLINNNMYQPRQHHFNHVKEVIASQHIDCQHQVADVYYSRFKK 238 Query: 238 SP--GMIVMACNKNYNQHEVANCLTLSYREVN 267 S + C + + + NC++ YR + Sbjct: 239 SQIENYFLAICYQQDSIDDYKNCIS--YRRLT 268 >UniRef50_C4UJG3 Transcriptional regulator n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UJG3_YERRU Length = 262 Score = 157 bits (396), Expect = 5e-37, Method: Composition-based stats. Identities = 54/266 (20%), Positives = 107/266 (40%), Gaps = 20/266 (7%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + IN+++ F+PE + S + + P S+ + + V+Q + +T W E Sbjct: 5 YNINNSVLFYPESGDIASSLT-GNTIKINMPTSQLFEVFITRMGVAVSQNELYTAAWGEN 63 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 + V NTLYQNIS++R+ + G + SL T+ +GF ++ H + D Sbjct: 64 SVNVTPNTLYQNISLLRKALQDSGIPSESL-KTLRGKGFIFTV-ASVVEHCVEDIQDVKD 121 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP--- 179 P Y + K I + ++L++ +I + N P Sbjct: 122 SEITPEKSEPTHYGK-------------KTIAYYSMLLTSLIIVFLGVLFYDYKNIPWRV 168 Query: 180 KPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239 + KD+ +++INGC + K + C+ +P++Y ++ Sbjct: 169 NNYPKDFVFISKINGCSIF-NSTEGKSIVNNQKINRLVKTLPAECESYPYVYISYSERHA 227 Query: 240 GMIVMACNKNYNQHEVANCLTLSYRE 265 + +++C + N E +C T + Sbjct: 228 TVSIISCRYDMNYTEQNDCKTEIFIN 253 >UniRef50_C4SUH9 Putative uncharacterized protein n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SUH9_YERFR Length = 267 Score = 156 bits (394), Expect = 8e-37, Method: Composition-based stats. Identities = 56/264 (21%), Positives = 113/264 (42%), Gaps = 15/264 (5%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + INDNI F+PE L S + + P ++ L + +++Q D ++ W + Sbjct: 5 YTINDNITFYPESGILSS-SLGGARIKINVPTAQLLEAFVNRVGLIISQSDLYSIAWGDN 63 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 G+ V NTLYQNIS++R+ + +G + + I TV +GF + + D Sbjct: 64 GVNVTPNTLYQNISLLRKALQDIGLSGEA-ITTVRGKGFIFTVTKVTECEIDIDPEDDEI 122 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP- 181 + K I + +++ ++ +I + ++ + + PK Sbjct: 123 IIENIVPQQQDEK---------LVTKNKYKIYNIVLLFASVLIFFGAVFYFIHKSIPKRI 173 Query: 182 --FFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239 + K++ +++I+GC T + L+ +K T + + C +P++Y P Sbjct: 174 IDYPKNFTFLSKIDGCSIF-TSTELHNLESQEKVNTFLSGQSLECNNYPYIYLNYTIRHP 232 Query: 240 GMIVMACNKNYNQHEVANCLTLSY 263 + V++C N + NC T + Sbjct: 233 TISVISCEFEVNYSKKNNCRTEIF 256 >UniRef50_B2VGK3 Putative transcriptional regulator n=1 Tax=Erwinia tasmaniensis RepID=B2VGK3_ERWT9 Length = 301 Score = 151 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 64/297 (21%), Positives = 109/297 (36%), Gaps = 37/297 (12%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 +N+ + F P+ +++ V++ AS CL LL+E +V Q F+ VW Sbjct: 13 KITLNNFLIFEPDKKRITGR---GNPAVISASASLCLELLIENVGLLVTHQQFYDYVWRR 69 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTD-- 119 G + TLYQNIS +RR G +I T+PR+GF + ++Q ++S T Sbjct: 70 FGTEPASTTLYQNISALRRALNKAG-LQEDIIRTMPRKGFLLSPQTSVQRESLSSFTPVS 128 Query: 120 ----------------AHTHNAPPAIKVNAGYKESIGGAKNFNNK----------ILKHI 153 ++ +ES G KNF LK Sbjct: 129 TEPERANTLSAGGNEMPDPSPTDERMRTAQNKQESDSGNKNFLYSALTECHFFPAFLKSK 188 Query: 154 KSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKY 213 K+ + F+ +S+++ + GC + DG D+ Sbjct: 189 KTMAVTFMLFLALLFSSFFYIRAGL-NYNDAVFVYSTNYKGCIIF---NNADGWLGKDEV 244 Query: 214 KTRILDSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSY-REVNRD 269 K + + I C ++Y K + + C + H NC + Y + +N D Sbjct: 245 KKLVDEMKIKCSTTSYVYLTAFKHADSLSYFDCEHPLSGHVRTNCRSHYYVKNLNND 301 >UniRef50_C4SF84 DNA-binding winged-HTH domains n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4SF84_YERMO Length = 276 Score = 150 bits (378), Expect = 6e-35, Method: Composition-based stats. Identities = 50/269 (18%), Positives = 96/269 (35%), Gaps = 12/269 (4%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN N+++ L N + LT S L LL++ +++ + +WE Sbjct: 1 MEYIINGNVKYNSSDGTLFCPDNNIDMITLTRVTSELLLLLIKNNGAPLSRDTILSELWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN-SSTD 119 + G+ +N L +S++R+ G T +LI T+P+ GF DI + + TD Sbjct: 61 KRGLTASSNNLNNYVSMLRKALAQCGYT--NLIVTIPKHGFLFEADITEMGEDNHLTRTD 118 Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179 + +V+ +I + L + + + + + Sbjct: 119 PKSVELTQRHEVDPPLASAISD---HHKTSLSGFFKGRVAVLILFFAVLTLLFSPSIYNY 175 Query: 180 KPFFKDYKTVAEINGCHFNVTEDTI---DGLKEFDKYKTRILDSGINCKKHPWLYF--PL 234 + I+ C + +DT D K I + C +Y+ Sbjct: 176 FRLQSLRTLLFNIDQCRIYLMDDTTRRLDSSNTISTIKMIINTGNLKCDSPANVYYFADK 235 Query: 235 AKSSPGMIVMACNKNYNQHE-VANCLTLS 262 K S G ++M +Y ++ C Sbjct: 236 KKDSSGHVIMTDMLSYCPYDIHVPCENYY 264 >UniRef50_A0KHX7 Transcriptional regulatory protein, C terminal n=7 Tax=Gammaproteobacteria RepID=A0KHX7_AERHH Length = 269 Score = 149 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 85/272 (31%), Gaps = 15/272 (5%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + IN + L + + + L+ A+ L +V++++ +VW+ Sbjct: 1 MRYHINARFIYDATDGSLTQRESVEPDSQLSITANALFYFFLRNTG-IVSREEVLKKVWD 59 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + G+ + L Q +SI+R+ FR ++I TV R +++ ++ I+ I Sbjct: 60 DNGLTSSNSNLNQYLSILRKAFRHYDI--DNIIITVSRGYLQLNPEVIIE--PIEHVPAP 115 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 P V A I + A N + Sbjct: 116 SIEIVPSPSTVAAAEPAFDPAEWPLPLTPRSRGICWYIAGGCMLAFALMLLAFGLLNGRE 175 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEF---DKYKTRILDSGINCKKHPWLYFPLAKS 237 P + + C +++ + + + ++ I+CK F Sbjct: 176 PRPVTLTGIPN-SQCELLASDEMLRSVSATTYGEHFEQVRQRLNISCKPGERFLFFYGDR 234 Query: 238 SP-----GMIVMACNKNYNQHEVANCLTLSYR 264 + + C + + + C Y Sbjct: 235 LETNGLGRVFLAHCAMHEDN-PFSYCDNYFYY 265 >UniRef50_C4T6D4 DNA-binding winged-HTH domains n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4T6D4_YERIN Length = 290 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 47/284 (16%), Positives = 95/284 (33%), Gaps = 25/284 (8%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +I+N I F P + L+ +++ + V L+ PASR L ++ + + + VWE Sbjct: 1 MKYILNLTIVFNPSEKILMELNDEERAVTLSNPASRLLLEFIKHQNEPIERDVLLKNVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + G + L +S +R+ A G+ +I T+P+ GF+ I + D Sbjct: 61 DYGFTASNSNLNAYVSELRKALAAFGEDPQ-IITTIPKYGFQFTARIESVLSPTLPAPDN 119 Query: 121 HTHNAPP--------AIKVNAGYKESIGGAKNFNNKILKHIKSHLIML--------SAFV 164 + + +++ + +L ML Sbjct: 120 GKEQDDDIAADTKEISTTIQPDTAPPHPPIAPLPQEVMAPGRKYLTMLRSKILLILVILS 179 Query: 165 IGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTRILDSGI 222 + A + N +Y EI+ C + ++ G + D + + + Sbjct: 180 VLATALKIYANWADVTIGKANYLLAGEIDQCQIFIQKNVAFPSGTETLDMARHDLRQRKV 239 Query: 223 NCKKHPWLYFPL-----AKSSPGMIVMACNKNYNQHEVANCLTL 261 +C F K + + C + C T+ Sbjct: 240 DCSVEKHSIFYTKGSDGYKINQLTFIGICAVDEQGR-YNECQTI 282 >UniRef50_C1MDX4 Putative uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MDX4_9ENTR Length = 251 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 52/260 (20%), Positives = 94/260 (36%), Gaps = 20/260 (7%) Query: 9 IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68 +EF P+ + L++ + L PAS C L+ D+V+Q T W E T Sbjct: 2 VEFNPDSKSLVNRQT-GRAIQLQLPASLCFLYLITHASDIVSQNTLMTIGWGERNNVTTT 60 Query: 69 NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPA 128 NT YQ I +R VG + T+ RRG +++ + ++ + + +PP Sbjct: 61 NTFYQAILTLRNALADVG-LPRDTVKTISRRGLRLNENTQVETITLQ-----QSEVSPPP 114 Query: 129 IKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL-WNNNQPKPFFKDY- 186 + + I + I ++ SA V+ A WL W +P F + Sbjct: 115 VIEEIPPAKIIPSTPQQTTQ----IPWFEVLFSASVVIATLIIWLVWYQTRPVMPFSKFV 170 Query: 187 ---KTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIV 243 C + + D F+ + C+ + ++ + ++ Sbjct: 171 QASMQTPSRQNCKIYYSPNEHDQQGYFNLMQLH----PYLCENNKHVFLTGYSKAERIVA 226 Query: 244 MACNKNYNQHEVANCLTLSY 263 C+K+ A C T Y Sbjct: 227 FVCDKDARVDANAFCTTHYY 246 >UniRef50_P15795 Cholera toxin transcriptional activator n=121 Tax=Gammaproteobacteria RepID=TOXR_VIBCH Length = 294 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 5/224 (2%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 +I+ + F P LI +++ + L + SR L LL + +V+++ D VW E Sbjct: 19 KFILAEKFTFDPLSNTLIDKEDSEEIIRLGSNESRILWLLAQRPNEVISRNDLHDFVWRE 78 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN-IQNHVINSSTDA 120 +G V ++L Q IS +R+ + + + TVP+RG+++ + ++ + S A Sbjct: 79 QGFEVDDSSLTQAISTLRKMLKDSTKSPQ-YVKTVPKRGYQLIARVETVEEEMARESEAA 137 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSA---FVIGAYSAYWLWNNN 177 H + P ++ A A N ++ ++ + +I L Sbjct: 138 HDISQPESVNEYAESSSVPSSATVVNTPQPANVVTNKSAPNLGNRLLILIAVLLPLAVLL 197 Query: 178 QPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221 P +K + ++G N+ + D + + Sbjct: 198 LTNPSQTSFKPLTVVDGVAVNMPNNHPDLSNWLPSIELCVKKYN 241 >UniRef50_B5FBZ3 Toxin transcriptional activator ToxR n=3 Tax=Vibrio fischeri RepID=B5FBZ3_VIBFM Length = 293 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 83/248 (33%), Gaps = 37/248 (14%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 II D F P LI N D + L SR LSLL++ VV++ + VW + Sbjct: 7 KIIIGDRFLFDPNDNSLIDTLNDDEIIRLGGNESRVLSLLIQEPGKVVSRHELHEYVWRD 66 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN------ 115 +G V ++L Q IS +R+ + + TVP+RG++ + Q Sbjct: 67 QGFEVDDSSLTQAISTLRKMLQDPTKLP-VYVKTVPKRGYQFISTAVAQVDPDQKIEAET 125 Query: 116 -------------SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSH--LIML 160 ++T H +A A V +I N+ H+ ++++ Sbjct: 126 EHNVENTPLNDSLNNTSVHQDDAQEAQTVAPQQNATIHQPSTANSAPQAHLSLLGTIMLI 185 Query: 161 SAFVIGAYSAYWLWNNNQPKPFFKDYKTV---------------AEINGCHFNVTEDTID 205 AFV+ + + +Y I C D Sbjct: 186 IAFVLPILAYVNHTPKSDAFVQVANYDNTPVFVPVNHPSIEQWKPLIEQCTNFYNSKHTD 245 Query: 206 GLKEFDKY 213 LK + Sbjct: 246 SLKPIEVI 253 >UniRef50_C7BJK4 Putative membrane protein n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BJK4_PHOAA Length = 312 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 54/281 (19%), Positives = 113/281 (40%), Gaps = 22/281 (7%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++IN + F P+ + L +N V L+ PASR L++ + + ++D VWE Sbjct: 26 MKYVINIIVVFDPKEKTLALFNNPLNTVKLSNPASRLFLELIKNNGETIPREDLLKNVWE 85 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI----------- 109 + G + L IS IR+ + T ++I T+P+ GF++ DI + Sbjct: 86 DYGFTGSNSNLNSYISEIRKNLACL-STDLTVIKTIPKVGFRLEADIQVSLQESPEEENN 144 Query: 110 -QNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY 168 +I S +D ++ + +V E+ ++ NN + K +K+ + + F+ Sbjct: 145 ADTDIIISESDINSLHRKDRPRVEDLEGENRVLKEHRNNHVNKWLKARIFLGIVFIFLLL 204 Query: 169 SAYWLWNNNQP-KPFFKDYKTVAEINGCHFNVTEDT--IDGLKEFDKYKTRILDSGINCK 225 S Y + + + + + Y + + C + + + I + I+C+ Sbjct: 205 SFYVFYLSKRTVEISQEHYSYLYKTGKCKVFSLDYKLGYSKATLREMAEQDISNEKIDCQ 264 Query: 226 KHPWLYF-----PLAKSSPGMIVMACNKNYNQHEVANCLTL 261 F P + + C+ + +CL++ Sbjct: 265 SVKQSIFHRRIMPENNIAKTYFIGVCSIAPSGK-YNHCLSI 304 >UniRef50_Q2NSQ9 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NSQ9_SODGM Length = 270 Score = 143 bits (360), Expect = 7e-33, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 111/279 (39%), Gaps = 27/279 (9%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFP--DVVAQQDFFTRV 58 M +IIN + F L V +AD +V L+ A R L L++ + V ++ F V Sbjct: 1 MKYIINSTVAFDTTEYLLTLVDDADTSVKLSNSAGRVLEELIQYRGTGEPVTREHLFASV 60 Query: 59 WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118 W G++ L Q +S+IR+G ++G ++I T+P+RG K+++ + I + Sbjct: 61 WSAHGLQPSNGNLNQQVSLIRKGLTSLGLDASAII-TIPKRGLKLNDQLVISTLEEDVFQ 119 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178 A G KN N + + L+++ + + + +++ Sbjct: 120 ATCIPAVNEFPMELAPPVMLSRGRKNINGAL-----TLLMVIVTLLTVIMAYIYYEDDDN 174 Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGIN---CKKHPWLYFPLA 235 K +F +IN C T I GL++ D + N CK + + F Sbjct: 175 QKLYFSS-----QINSCKVY-TFHPIPGLEKEDYRLRIVEAMKGNVEKCKNNYIVIFSKT 228 Query: 236 ---------KSSPGMIVMACNKNYNQHEVANCLTLSYRE 265 + + C K+ + H ++NCL + Sbjct: 229 LIPDPLIQDNINVRTFMAKCRKDEDDH-ISNCLNFFFYN 266 >UniRef50_D2YQP0 Transmembrane regulatory protein ToxR n=7 Tax=Vibrio RepID=D2YQP0_VIBMI Length = 280 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 79/225 (35%), Gaps = 9/225 (4%) Query: 2 YWIINDNIEFWPE-HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 +I+ + F P LI N++ + L + SR L LL + +VV++ D VW Sbjct: 7 KFILAERFTFDPLLSNSLIDKENSEEIIRLGSNESRILWLLAQRPNEVVSRNDLHDFVWR 66 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E+G V ++L Q IS +R+ + + + TVP+RG+++ + I + D Sbjct: 67 EQGFEVDDSSLTQAISTLRKMLKDSTKSPQ-YVKTVPKRGYQLITRVETVEEEIQNDMDE 125 Query: 121 HTHNAPPAIKVNAGYKESIG----GAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNN 176 TH + S K S L + ++ Sbjct: 126 VTHQETGIDFSESTNSTSSSNLGQTTATPQKVTSKATNSWGTRLILLIAMLIPLAVVYLT 185 Query: 177 NQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221 N + FK ++ N+ + D + + Sbjct: 186 NPSESKFKPLTV---VDDVAVNMPINHPDLSNWLPSIELCVKKYN 227 >UniRef50_A8GBW4 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568 RepID=A8GBW4_SERP5 Length = 279 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 14/207 (6%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + +ND+I F + L +D + ++ P+ R L LL+ + V ++ F +VW+ Sbjct: 1 MKYRLNDHIIFDVDTGTLSLTELSDDPISISNPSKRLLLLLITHHGEAVGREVIFKKVWD 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS--T 118 + GM N L Q +S +RR + +G +IATVP+ GF + +I +++ + T Sbjct: 61 DYGMVSGNNNLNQCVSKLRRVIKNLGI-EEEVIATVPKVGFMLRYEIIVEHCDGPENSFT 119 Query: 119 DAHTHNAP-----PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL 173 D T P P I +AG S+G ++ I S + + ++ A S Y Sbjct: 120 DEETSVIPHASVQPEIASSAGKPGSVGTVYAGYSRRWWTIASIVALGVIMLVVAISCYLT 179 Query: 174 WNNNQPKPFFKDYKTVAEINGCHFNVT 200 + ++ + + + + N C ++ Sbjct: 180 GSVSRQEIY------LGKANSCKVFMS 200 >UniRef50_B2D6Y9 ToxR n=2 Tax=Vibrio cholerae RepID=B2D6Y9_VIBCH Length = 186 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 1/149 (0%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 +I+ + F P LI +++ + L + SR L LL + +V+++ D VW E Sbjct: 7 KFILAEKFTFDPLSNTLIDKEDSEEIIRLGSNESRILWLLAQRPNEVISRNDLHDFVWRE 66 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 +G V ++L Q IS +R+ + + + TVP+RG+++ + + ++A Sbjct: 67 QGFEVDDSSLTQAISTLRKMLKDSTKSPQ-YVKTVPKRGYQLIARVETVEEEMARESEAA 125 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKIL 150 + P S+ + N Sbjct: 126 HDISQPECVNEYAESSSVPSSATVVNTPQ 154 >UniRef50_A8GL29 Transcriptional regulator, CadC n=2 Tax=Serratia RepID=A8GL29_SERP5 Length = 255 Score = 137 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 89/265 (33%), Gaps = 12/265 (4%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++IN I++ L ++ + ++L PA R LS+ + ++ ++ VWE Sbjct: 1 MIFVINKTIKYNEYEGTLENIDDPGNTILLVKPACRLLSIFVRNNDMLIKRKQLLDEVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + G++ + L IS +RR LI T PR+GFK I ++ +A Sbjct: 61 DYGLKATDSNLNNYISGLRRSLAKFD--EEELIITYPRQGFKF-----IAKKIVRQEANA 113 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 +++ G K + +K + A + + + + Sbjct: 114 ILSETDSVVELEKKESIRPDGPKEGQRRAYSWLKKTALQKMAVITVILLLPFFLSMAYKQ 173 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 + + + C + K ++ + +C+ +Y+ Sbjct: 174 IPISNITNLGQYKNCDIYSIKYN----GMQPKEIEHVISNRYSCEDKANVYYYFNIKEKS 229 Query: 241 MIVMACNKNYNQ-HEVANCLTLSYR 264 + A Y +C + Sbjct: 230 VSSHASLIAYCPLDVTTSCEISYIK 254 >UniRef50_A8GJD8 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568 RepID=A8GJD8_SERP5 Length = 267 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 54/274 (19%), Positives = 101/274 (36%), Gaps = 22/274 (8%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN +++ LI N+ + LT A+ L L + + + D +W Sbjct: 1 MEFIINRVLKYNSSDGTLICPDNSVDMITLTRVANELLFLFINNNHISLRRDDILNELWG 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ--NHVINSST 118 + G+ +N L +S++RR G LI T+P+ GF D+ + N + + Sbjct: 61 KRGLSASSNNLNNYVSMLRRALEQCGFAG--LITTIPKYGFIFEADVVVVATNALSEDTD 118 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178 + A ++ N K+ + F++ LK ++++ Y+ +N+ Sbjct: 119 QTDENEALASLVFNNEEKKINPKVRYFSSVTLKTAFVFMVIIMMLFSSQIYDYFYLKSNR 178 Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKY---KTRILDSGINCKKHPWLYF--- 232 + F + C F + +D I G E D K INC +Y+ Sbjct: 179 TEVFS--------MGKCTFYLIDDKIGGRVEEDVIHNMKVAAKKEKINCDVKSNVYYVSE 230 Query: 233 ----PLAKSSPGMIVMACNKNYNQHEVANCLTLS 262 L K +M C +++ Sbjct: 231 ALLDSLGKKYVSRSLMYCPYGNKLPCENYHISIY 264 >UniRef50_C4SV61 Putative uncharacterized protein n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SV61_YERFR Length = 258 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 52/262 (19%), Positives = 98/262 (37%), Gaps = 19/262 (7%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++IN ++ F+P + S+ V L +P ++ L + ++Q + + W E+ Sbjct: 9 YVINGDVIFYPGSGIVSSLLT-GNTVKLNSPTAQLLEAFVSRVGITISQSELYNIAWGEK 67 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 G V NTLYQNIS++R+ + VG T S + TV +GF I+N N + Sbjct: 68 GSSVTPNTLYQNISLLRKALKDVGVTGES-VTTVRGKGFIFTMATVIENMTDNEIVKNIS 126 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 K I +IM F++ + Sbjct: 127 LECNDNKT-----------------KKKMIIVYSIIMGGCFILILLYFFIKSQPGYFVAR 169 Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMI 242 D + + IN F +++ D + + +C+ +P+LY L++ + Sbjct: 170 KSDGFSFSHINEKCFIYYDNSNDMNSIIPDIDVFLEGTLSSCQVYPYLYISLSELHSTIS 229 Query: 243 VMACNKNYNQHEVANCLTLSYR 264 + +C + C T + Sbjct: 230 LTSCKNEIINNSKNVCKTELFY 251 >UniRef50_Q9RHQ9 Transmembrane regulatory protein ToxR n=2 Tax=Grimontia hollisae RepID=Q9RHQ9_VIBHO Length = 292 Score = 134 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 81/233 (34%), Gaps = 15/233 (6%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 +++ + F P LI ++ D + L + R L +L+E +V + VW + Sbjct: 7 RYLLGERFVFSPSDSSLIDLYENDDLIRLGSNECRVLMVLIEEPHAIVTRNRIHDFVWRK 66 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA- 120 +G V ++L Q+IS +R+ + + + TVP+RG+++ + + N + Sbjct: 67 QGFEVDDSSLTQSISTLRKSLKDSTKSPM-FVKTVPKRGYQVVCSVEVYNEQEVELPEPA 125 Query: 121 -----HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLS--------AFVIGA 167 T ++ +++ + + ++ + A V+ Sbjct: 126 ASVIDETAAKTEPELLSDNTAQTLPLPDAVAEQTEPKVSTNATAPAKMPLGSWVALVLTL 185 Query: 168 YSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDS 220 + P P + ++ + I + + + + Sbjct: 186 LVPLAFQIASNPNPKSEAFREILTIENVPVYIPVTNARISQWQPMVQRCVEKY 238 >UniRef50_C4T4W9 DNA-binding winged-HTH domains n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4T4W9_YERIN Length = 290 Score = 134 bits (336), Expect = 4e-30, Method: Composition-based stats. Identities = 52/287 (18%), Positives = 108/287 (37%), Gaps = 27/287 (9%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++IN I F P +KL+ +++ D+ V+L+ PA+R L ++ + + +WE Sbjct: 1 MKYLINYTIFFKPSEKKLMILNDEDIFVILSNPATRLLLEFIKHRNKAIDRITLLKDIWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + G + L +S +R+ F+A+G++ +I T+P+ GF+ + Q D Sbjct: 61 DYGFTASNSNLNTYVSELRKAFKALGESPQ-VILTIPKHGFQFVAHVESQMKDERQENDC 119 Query: 121 HTHNA----------------PPAIKVNAGYKESIGGAKNFNN--KILKHIKSHLIMLSA 162 K I G +N ++ + ++ L++L Sbjct: 120 LIDTQDISDEKVKNLNFKREFNRDEKQPDIDVTPITGKENIDSNAEKMEFSAKILLILVI 179 Query: 163 FVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTRILDS 220 F + + ++ + K + +I C V +++ + + K + Sbjct: 180 FTVTITAFKIYYSCAEIIINKKSHVLAGKIGKCMLYVKKNSTYPPADQLINLVKNDLQQD 239 Query: 221 GINCK--KHPWLYFPLAKSSP---GMIVMACNKNYNQHEVANCLTLS 262 I+CK + Y + C K +C T+S Sbjct: 240 EIDCKNDNNEIFYLKGNNDHKFNQLTFIGICAKKEGSDS-TSCRTIS 285 >UniRef50_C2LLY1 Regulatory protein n=9 Tax=Enterobacteriaceae RepID=C2LLY1_PROMI Length = 295 Score = 133 bits (334), Expect = 8e-30, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 98/290 (33%), Gaps = 34/290 (11%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + IN +I + + S+ D++ L+ A+ L ++ VV + + RVW+ Sbjct: 10 MKYRINASIYYDATDGAI-SLEKGDVDTHLSITANALLFYFIQNPG-VVNRDEVLKRVWD 67 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN----- 115 + G+ + L Q +S++R+ FR G ++I T+ + + + DI+++ + Sbjct: 68 DNGLVSSNSNLNQYLSLLRKTFRHYGI--ENIIVTIAKGRLEFNPDISVELIDDSTLLPV 125 Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILK-------------HIKSHLIMLSA 162 + T+ H A + + N ++++ K + Sbjct: 126 TQTNEHEGEANKSNIASPIETSLSSEPDNLDSELEKEPQLSVTSPQKPEICWYLASIGFL 185 Query: 163 FVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTR---ILD 219 F N +Q KP T N C E I+ + + Sbjct: 186 FGAIFLVVIIFLNQHQSKPIT---LTPLTHNDCELLSNEAMINSSVSDNYIRNFDAVRKK 242 Query: 220 SGINCKKHPWLYFPLAKSSP-----GMIVMACNKNYNQHEVANCLTLSYR 264 + C K F + + C KN + + C Y Sbjct: 243 LNLQCVKGERFVFFYGDKLQTNGLGRVFLAHCAKNEDN-PFSYCDNYFYY 291 >UniRef50_C9PH99 Putative uncharacterized protein n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PH99_VIBFU Length = 262 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 46/273 (16%), Positives = 94/273 (34%), Gaps = 29/273 (10%) Query: 1 MYWIINDNIEFWPEHRKL--ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRV 58 M ++N + + L + ++ LT A+R L LL + + + Sbjct: 1 MKLLLNHTVIYNSSDGTLKLSDAESDHESLTLTPTANRLLELLSKHHGTPMERDVLLMEG 60 Query: 59 WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118 W++ G++ ++L Q IS +R+ +I T+P+ GF ++N+ I+N Sbjct: 61 WDKFGLKGSYSSLNQYISQLRKTLHKFTGV-DDIILTIPKVGFMLNNEFPIKNMDPEPIA 119 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178 + + K + K+ + K + + L+ + + Sbjct: 120 VSEST-----AKAHHAPKKKVTFKKYLYPFLYTSLFGVLVTGTTII-------------- 160 Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDK--YKTRILDSGINCKKHPWLYF---- 232 K F++D + +I C D F K + I+C K ++F Sbjct: 161 SKKFYQDAYHIGKIEQCDVYNFRKRSDEGIAFQLSILKEEMQKLNIHCGKTEKVFFHSQN 220 Query: 233 PLAKSSPGMIVMACNKNYNQHEVANCLTLSYRE 265 L G + + + A C Y + Sbjct: 221 SLFYGHSGRLFFSKCFLVDGKFSA-CENYYYYQ 252 >UniRef50_A8AP73 Putative uncharacterized protein n=1 Tax=Citrobacter koseri ATCC BAA-895 RepID=A8AP73_CITK8 Length = 233 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 77/237 (32%), Gaps = 12/237 (5%) Query: 26 LNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAV 85 V L +PAS L L++ VV+Q T W E+ NT YQ I I+R + Sbjct: 3 KTVTLQSPASLILLYLIQHNNTVVSQNQLITAGWGEKNHVTSANTFYQTILILRNALSDI 62 Query: 86 GDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNF 145 G LI T+ RRG I +I +S G Sbjct: 63 G-LPRDLIKTIARRGMMISANIQTDEITAKASAIEAPAQIVEPQMEPK-------GDTPI 114 Query: 146 NNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTID 205 + L + + V+ + +A + + + + + C + + Sbjct: 115 KKRHLSRPAALCGLALLVVMISIAASLFYMSPESLLSSYEVLDSETFSSCTVLQKGNDV- 173 Query: 206 GLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLS 262 Y + C + +++ S+ + + C ++ ++ C+T Sbjct: 174 ---LEKNYIRFMHKHREICDNNNYVFLSGMSSAKNITAIICPEDARENPSVKCITYY 227 >UniRef50_Q1Z5R8 Transcription activator ToxR n=4 Tax=Photobacterium RepID=Q1Z5R8_PHOPR Length = 291 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 3/151 (1%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++I F P LI H +D L + SR L LL+E ++ + VW E Sbjct: 7 KYLIGQRFLFDPYDNSLIDQHESDELTRLGSNESRALGLLIEDPGAIITRNRLHDYVWRE 66 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS--TD 119 +G V ++L Q IS +R+ + + I TVP+RG+++ + + +++ T Sbjct: 67 QGFEVDDSSLTQAISTLRKALKDSTKSP-DFIKTVPKRGYQMIAPVEEYSSEASNTEHTV 125 Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKIL 150 A T ++P + N +++ + + + Sbjct: 126 AETPDSPDSADENNHHQDGVRHSATAIAHVS 156 >UniRef50_B2VDV6 Putative transcriptional regulatory protein n=1 Tax=Erwinia tasmaniensis RepID=B2VDV6_ERWT9 Length = 266 Score = 130 bits (327), Expect = 4e-29, Method: Composition-based stats. Identities = 51/267 (19%), Positives = 95/267 (35%), Gaps = 13/267 (4%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 II DN+ +++S V+L A RC L +A V++Q+ W G Sbjct: 5 IIIDNLLMLDGRTRMLSRIPDGKGVMLPASACRCFIALAQAKEQVLSQEQLMDVGWRHSG 64 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 + V N++ I+ IRR A+ + V R G+++ I T T Sbjct: 65 VEVTDNSVRVMITKIRRALIALEVNDSVQLIAVTRSGYRL-----IVRTEQPDITRRTTS 119 Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFF 183 + P + V+ G A + + + + + L A + WL + Sbjct: 120 ASNP-LHVSTGLVSRHVSAYRAHRFLRRRLAAGAAGLVLGSCLAAAVSWLLAIKPTPINY 178 Query: 184 KDYKTVAEINGCHFNV----TEDTIDGLKEFDKYKTRILDSG--INCKKHPWLYFPLAKS 237 + V + D ++ Y+ ++ IN + +LY + Sbjct: 179 VRWHGAETPPQTEVWVPGNISPDKQRVVQTLQLYRQYAINKNGDINPEHARYLYITTGGA 238 Query: 238 SPGMIVMACNKNYNQHEVANCLTLSYR 264 SP + ++AC NC + S++ Sbjct: 239 SPDLGLIACVAPLR-DSENNCESYSFK 264 >UniRef50_C4UHM9 Transcriptional regulatory protein, C n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UHM9_YERRU Length = 300 Score = 130 bits (327), Expect = 4e-29, Method: Composition-based stats. Identities = 71/299 (23%), Positives = 123/299 (41%), Gaps = 41/299 (13%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 I N+ + + L +++N V LTTPA+ CL ++ +VV+Q+ FFT VWE Sbjct: 4 KIIFNNKVVYDHAIAALYNINNKSEMVFLTTPANHCLLIITNNRHEVVSQRTFFTEVWEN 63 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA- 120 G + +NT YQNISIIRR F+ +G T +I TVPRRG +I ++I I + S Sbjct: 64 HGAPINSNTFYQNISIIRRAFKQLGLT-EDVIVTVPRRGVRIGSNIEISSFPPISGQTPE 122 Query: 121 -------HTHNAPPAIKVNAGYKESIGGAKN-------------------FNNKILKHIK 154 + + Y+E + + N+ L+ +K Sbjct: 123 SMVLIAKESAEVSKQDNEDTQYQEDVKNFTHNHSDNRIVEERGDFYYSGSNNSSFLRLVK 182 Query: 155 S----------HLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTI 204 + +I I A+SA + K F DYK+ + C Sbjct: 183 TIPSIWDVNYHIVIAFIFLAIMAFSASVFDSYFYSKSRFYDYKSSFLLEQCDVFSQISRD 242 Query: 205 DGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSY 263 ++ + I + I+C++ +YF + P + ++ C+ + + C + + Sbjct: 243 --IEIRKSVEHMIKINNISCQEPKRVYFSSFPALPRLSLIVCDGDILKSG-TYCNSYYH 298 >UniRef50_D0XFV2 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XFV2_VIBHA Length = 277 Score = 129 bits (325), Expect = 8e-29, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 81/245 (33%), Gaps = 10/245 (4%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M+ I N+ P RKL + D V L + L+LL+E V ++ F W+ Sbjct: 1 MHRIYFANLILDPTTRKLSNSDGDD--VPLRPLPYQVLNLLIEKQGVHVTREALFESCWD 58 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 G V L IS +R+ + I TV + G+ + ++N I + Sbjct: 59 --GSVVTDQALTNVISGLRKKLAQLNAQGVQ-IKTVSKIGYLL--EVNADVKPIKQKVEI 113 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 V++ K + +K + F I + + + + Sbjct: 114 PELQTLEIDDVDSQVKAAPKQEAESRDKAFSVAPILMAAFLLFAIASVLYFRPFAPHPDF 173 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 DY+ ++ F + D L K+ + C +Y +++S+ Sbjct: 174 LDDSDYQH-FSVSETDFYFYDQNHDELDLSALAKSLNDEVFPVC--PAIVYLRVSESAYK 230 Query: 241 MIVMA 245 Sbjct: 231 EGAHI 235 >UniRef50_D2TQU5 Putative transcriptional regulator n=2 Tax=Enterobacteriaceae RepID=D2TQU5_CITRO Length = 242 Score = 128 bits (321), Expect = 2e-28, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 95/268 (35%), Gaps = 27/268 (10%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + I I F E L+++ D + L+ ++R L+ LL D++++ + F V++ Sbjct: 1 MRFDIEGFITFDTEDASLVNLLTGDC-IELSQTSTRLLAELLNHRGDILSRNEIFQSVFD 59 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + G R + L Q IS +RR +G +I TVPR GFKI D + N + Sbjct: 60 KYGARASNSNLNQYISTLRRNLSDLGVK-KEIIVTVPRIGFKISEDAIVNNDREYRTPFL 118 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 +A ++ + + + AF++ Sbjct: 119 DEKDASLSLSAQT-------------SPFHHLFTRIIALTIAFLLLMMKPGVYRPEADIH 165 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 K + + + +D + FD +C K LY + G Sbjct: 166 KIVKGHCVIF------IPASLSLMDVKRSFDLTAQ-----PFDCSKAKELYIYR-QQVQG 213 Query: 241 MIVMACNKNYNQHEVANCLTLSYREVNR 268 + + + C++ YRE N Sbjct: 214 TLGNIMQLLLMECDNEGCVSFYYREKNN 241 >UniRef50_D0ZEM9 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEM9_EDWTE Length = 251 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 51/262 (19%), Positives = 92/262 (35%), Gaps = 27/262 (10%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + +N+N+ + + +L + + D ++L A+R L LL+ V + F VW++ Sbjct: 11 YRLNENVLYNEQEAELKATVDGDA-ILLAPSANRLLHLLILNQGIPVTRDTLFKLVWDDH 69 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 G+R L Q IS++RR VG I T+P+ GF I I I Sbjct: 70 GLRSSNANLNQYISLLRRQLFDVG-LPKDTIVTIPKIGFMIDKTIAIT------------ 116 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 + + + K + I F++ + +++ N Q P Sbjct: 117 ------LIQESPPLKLFPEKGKDKTKQKLNTTIISICTGLFLLSFLAIFFVSKNEQQLPK 170 Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMI 242 FK C+ +T L + K +C + G Sbjct: 171 FKFQPITNNTIECNIYSLSNTTTFLSNASELKRLK-----DCNASFDYFIYFNHEQKGRE 225 Query: 243 VMA-CNKN-YNQHEVANCLTLS 262 +++ C K+ N + C S Sbjct: 226 LISWCKKDPENSNAFIYCKNES 247 >UniRef50_D2T558 Protein rcaC n=3 Tax=Erwinia RepID=D2T558_ERWPY Length = 249 Score = 126 bits (316), Expect = 7e-28, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 87/258 (33%), Gaps = 14/258 (5%) Query: 8 NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 + F PE+ L N +++ +T RCL L++ + ++ W + G+ V Sbjct: 2 RVYFEPENCIL---SNDKMSIKITLQEGRCLDYLVKNEGKFIRREKLLEECWIKRGVTVS 58 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPP 127 + + Q++ +RR F G +L T R+G + Q I T +HN Sbjct: 59 DSAVRQSLYRLRRAFEDAGLPPSTL-TTQARKGHIL------QEGSIILLTAHASHNCVD 111 Query: 128 AIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYK 187 K+ + + S FVI + L+ Q +Y Sbjct: 112 IESSVPSMKKQGTYRHTHLYSTVTSLLPFAKFASLFVIFFLAG--LYTRQQIMITEVNYH 169 Query: 188 TVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACN 247 E G + ++ K + + +N ++Y + CN Sbjct: 170 QAEEKEGRFYFYRKNQAPYESAASKINYWLDNKLVNASDMKYVYLN-NSWAGNTSFYLCN 228 Query: 248 KNYNQHEVANCLTLSYRE 265 + ++C +++ + Sbjct: 229 EEIGSEG-SHCTSVTVKG 245 >UniRef50_A3USG7 Cholera toxin transcriptional activator n=1 Tax=Vibrio splendidus 12B01 RepID=A3USG7_VIBSP Length = 239 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 78/223 (34%), Gaps = 6/223 (2%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 +IIND+I+ E ++ + + S L + +V+ +Q +VW Sbjct: 4 EFIINDDIQVNLEESEIHHFKT-GRTYPIGSNESELLKFFISRPNEVITRQVLIEQVWVS 62 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 +G+ V +L Q ISI R+ + +I T +G++ + S + Sbjct: 63 KGIYVEDGSLMQTISICRKALED---KSGMIIVTERGKGYRFAGQVTQDKERALSKIQSQ 119 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNK-ILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 + + K S L +++ FV+ A +++L++ Sbjct: 120 PKQETKQPENSKAIDSIATENSTTEKTAATKKTNSVLALIALFVVTAGLSHYLFSYLDRN 179 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGIN 223 +D I C E T + L Y+ + I+ Sbjct: 180 SLGEDLVGQHFI-SCRIESDEFTFNELFNVTLYEYKGRKIIID 221 >UniRef50_C4SZK7 Putative uncharacterized protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4SZK7_YERIN Length = 247 Score = 124 bits (310), Expect = 4e-27, Method: Composition-based stats. Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 20/259 (7%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 IIN + + + + +++ + +V L P + CL +LL+ +P+V+ Q FF + WE++G Sbjct: 6 IINKIVAYDYNNAIIYNINKPEKSVSLYAPTNECLYILLDQYPNVIPQNYFFEQAWEKQG 65 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 + N YQ+IS+IRR F VG +I T+PRRG + D+ I H Sbjct: 66 LTTTNNNFYQHISMIRRAFEVVGLNG-DIILTLPRRGLSLSKDLEI----------THEE 114 Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFF 183 K E+ A N+ + S +++S +I +S + + Sbjct: 115 KKRQDKKEEIVIDETSNNATINNSMLR---ASLWVVVSILIITLFSILLYNKKSPYEKSI 171 Query: 184 KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIV 243 ++Y V +I CH + D K I + INC K LY+ + Sbjct: 172 ENYNHVEDIELCHLFSLSEGYD----VSNVKEIIKNEKINCNKVKNLYYTTYPIIKRESL 227 Query: 244 MACNKNYNQHEVANCLTLS 262 + C + + NC++ Sbjct: 228 IYC--DVLNNTPKNCISYL 244 >UniRef50_D0YZ11 Transcriptional activator ToxR n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0YZ11_LISDA Length = 299 Score = 123 bits (308), Expect = 7e-27, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 1/145 (0%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 I F P LI + + L + SR LSLL++ ++ + VW E Sbjct: 7 KHCIGQRFIFDPYDNSLIDTVENNELIRLGSNESRALSLLIDEPGAIITRNRLHDYVWRE 66 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 +G V ++L Q IS +R+ + + + TVP+RG+++ + + + T Sbjct: 67 QGFEVDDSSLTQCISTLRKALKDPTKSPE-YVKTVPKRGYQMIATVEKYVDMPLAITATE 125 Query: 122 THNAPPAIKVNAGYKESIGGAKNFN 146 ++ + ++ A Sbjct: 126 HAEDLTSVPEHHYQDSALVTAPQSA 150 >UniRef50_C9QE85 Putative uncharacterized protein n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QE85_VIBOR Length = 280 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 43/263 (16%), Positives = 89/263 (33%), Gaps = 9/263 (3%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M I +++ E R L + V+L L LL ++++ F + W Sbjct: 1 MKAIQFSSLKLECETRTLS--NGFGNKVILRPLPYEVLVFLLL-KGAPASREELFEKCWG 57 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 G V L IS +RR F + + I T+ + G+ + ++ + + T Sbjct: 58 --GAVVTDQALTNVISDLRRHFFVLNAKEIN-IQTISKVGYFLDVEVEVIEALEPVQTIE 114 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 T + V ++ N K + K+ +++ A + + + Sbjct: 115 DTTDVELNPSVTPSHQSQEM--ANHAPKRDINFKASYLLVFALIAMIAATFIFEPFKPRS 172 Query: 181 PFFKDYKTVAEINGC-HFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239 PF + V ++G F + + T + + + S NC ++ + P Sbjct: 173 PFTDLSQYVQLLDGSPTFYLMDGTNGSIDKAFLTEQLGKASLANCSADVYIRVFPSIYEP 232 Query: 240 GMIVMACNKNYNQHEVANCLTLS 262 G+I M ++ Sbjct: 233 GVIAMTVRLKSKTSAHSHVFQHF 255 >UniRef50_A5L3N2 DNA-binding transcriptional activator n=2 Tax=Vibrionales RepID=A5L3N2_9GAMM Length = 492 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 5/175 (2%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 D F P +++ A+ V + ++ L L + + VW GM + Sbjct: 11 DEWLFVPNEGQILF---AERTVTIDKRLTKLLEFLCLNPGQTHTRDELINNVW--SGMIL 65 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126 + Q + +R+ + +S I TVP+RG+K D+ + + A Sbjct: 66 SDQVVTQAVFELRKVLKQNSQQHNSYIITVPKRGYKFEADVIQSKIETDQVAEPEPSTAQ 125 Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 P+ + + + + +L ++ S Y L++ + P Sbjct: 126 PSDPEQSPPADKLPQTDVSEKTKPNKRNLMIGLLLGAIVVMESGYILYSASSSTP 180 >UniRef50_A8GL31 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568 RepID=A8GL31_SERP5 Length = 256 Score = 118 bits (295), Expect = 2e-25, Method: Composition-based stats. Identities = 48/272 (17%), Positives = 89/272 (32%), Gaps = 34/272 (12%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN I F + + + + V+LT R LSLL++ ++ ++ + W+ Sbjct: 1 MKFIINKRIIFHEDKSTIELLDDTIEPVMLTATLCRVLSLLVKNNDLLLTREFILSSAWD 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E G + L IS+IR+ F + G++ +I TVPR+GF + + + Sbjct: 61 EYGKSSTHSNLNNYISMIRKIFNSFGES--DIIITVPRQGFMFSAG-EVNTVDGETIQGS 117 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 + ++ A+ + + I+ L K Sbjct: 118 VSSDSLAAVVERKWHSAHLIALALMAAAIVMIAAYPLF--------------------NK 157 Query: 181 PFFKDYKTVAEINGCHFNVTEDTI---DGLKEFDKYKTRILDSGINCKKHPWLYFPLAKS 237 + + C V E K K I NC +Y+ +K Sbjct: 158 YNSAKMSEIGRVENCKVEVLTAAHYVKHADDELAKVKPLIEKLKFNCAVPATIYYFNSKM 217 Query: 238 SPGM--------IVMACNKNYNQHEVANCLTL 261 + C + + A C + Sbjct: 218 LVSHTGMNNAVSFLSYCPTSSVRGVEAQCENV 249 >UniRef50_A1JPG4 Possible reguatory protein n=5 Tax=Yersinia RepID=A1JPG4_YERE8 Length = 219 Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 12/228 (5%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M II +I F P R L + + + S LSLL +PDV++++D ++W Sbjct: 1 MNDIIIGDIIFTPLKRTL---NKGGSVIKIRNKESEVLSLLCFHYPDVLSREDIEKKIWS 57 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E V NTL Q IS +R H L+ T+P++G+ + N ++ + + Sbjct: 58 ES--YVTDNTLTQTISNLRHALND---KKHELVTTIPKKGYCLGVKPNFTDNDFSEISSV 112 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 ++ N ES+ K + + + + + ++F + + N + Sbjct: 113 TQTEVLDSLAYNT--TESLSKQKYLASGFIVFMMFCVCLATSFNVTSDYYQIKITNVKNL 170 Query: 181 PFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTRILDSGINCKK 226 P + + + + E I K + ++ GI C+K Sbjct: 171 PLTINIDEIHDKDFLSSYNKEPYIFLKKQKNSEYTVCKLQHGGITCQK 218 >UniRef50_C4SAM2 Possible regulatory protein n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4SAM2_YERMO Length = 243 Score = 116 bits (291), Expect = 6e-25, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 85/228 (37%), Gaps = 12/228 (5%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M II NI F P R + + V + S LSLL +P +++++ +W Sbjct: 25 MDEIIIGNIIFTPSKRTI---NKGGAVVKIRNKESEVLSLLCHHYPSSLSREEIEREIWG 81 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E V NTL Q IS +R L+ T+P++G+ I + + NS D Sbjct: 82 ES--YVTDNTLTQTISNLRHALDD---KARELVTTIPKKGYCIGIKPDFTSS--NSLQDL 134 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 + V + + +F+ KI++ I S + +F + + S N Sbjct: 135 ILTQDDSMVSVKPKSTSLVSKSLSFHYKIIRLIVSIVGFFISFELTSNSHQIKINEVTTL 194 Query: 181 PFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTRILDSGINCKK 226 P V + + E I + + + + + C+K Sbjct: 195 PILVGLDQVLDKDFLSLYQKEPYIFLKKWSDGEYIICKYNNGELLCEK 242 >UniRef50_Q12IZ6 Transcriptional regulatory protein-like protein n=2 Tax=Shewanella RepID=Q12IZ6_SHEDO Length = 580 Score = 116 bits (290), Expect = 9e-25, Method: Composition-based stats. Identities = 40/220 (18%), Positives = 78/220 (35%), Gaps = 8/220 (3%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 + ND + L V + L V L + R LS+L EA P +V+Q+ +VW + Sbjct: 17 RYQFND-LTLNTRLGTL--VRDDKLEVRLPWLSYRLLSVLCEAAPGIVSQEQLLEKVWPD 73 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 + V TL Q I ++RR T I + RG+++ + + + V T Sbjct: 74 --VVVGDETLKQRIKLLRRALNDDAHTP-IYIEAIRGRGYRLLPQVIVTSEVTP--TRMT 128 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 + + V +S + L + +++ F+ + L N Sbjct: 129 SLDLANDTHVMPEDGKSYPLFWKLTSLSLAALMLIFALVALFISSGDNLAKLDENAPSSL 188 Query: 182 FFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221 + + G + D L + + + + + Sbjct: 189 ASPGFDVELYLKGLDYYHRYREADNLHAIELFTSALAINP 228 >UniRef50_C9NME3 Putative transcriptional activator ToxR n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NME3_9VIBR Length = 255 Score = 116 bits (290), Expect = 9e-25, Method: Composition-based stats. Identities = 37/237 (15%), Positives = 81/237 (34%), Gaps = 17/237 (7%) Query: 9 IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68 I F KL + + + ++ L LLL+ P+VV + D W E + Sbjct: 2 IIFHSVQNKLSNTQ---RVIKIGYREAQVLDLLLKHSPEVVKKHDIVQHAWGSE--YIGE 56 Query: 69 NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPA 128 +L ++IS +R+ +G I TVP+ G+++ + +I+ N P Sbjct: 57 TSLAKSISTLRQALLKLGAKESP-IVTVPKVGYRLVSH-SIEYAPAEPPPQIDKSNPAPN 114 Query: 129 IKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKT 188 + +A + N + K K ++ ++ + A + + + D Sbjct: 115 LPTSAASSSQRVTS-NLSLKECKSPLCYVAAIALLFASSILALSKVHGWRWEDIPSDQHL 173 Query: 189 V-AEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVM 244 + +T L + + + +C +Y + + + Sbjct: 174 ARHTVGQLQVFTESETRLSLP----LRQLLSQNQCDC----VVYIEKNERFSELSWL 222 >UniRef50_D1RYQ0 Transcriptional regulator, CadC n=1 Tax=Serratia odorifera 4Rx13 RepID=D1RYQ0_SEROD Length = 258 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 57/271 (21%), Positives = 101/271 (37%), Gaps = 34/271 (12%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN I F + + + + V+LT R LSLL++ ++ ++ + W+ Sbjct: 1 MKFIINKRIIFHEDKSSIELLDDTIEPVMLTATLCRVLSLLVKNNNLLLTREFLLSNGWD 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 E G + L IS+IR+ F + G++ +I TVPR+GF D +S + Sbjct: 61 EYGKSSSHSNLNNYISMIRKIFNSFGES--EIIVTVPRQGFMFSADEVNTVDGESSLSSV 118 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 PA + + ++L+A I +AY ++ QP Sbjct: 119 SRDLPAPAAAIKWKPAGLVS-----------------LVLAAMAILMVAAYPFFDRYQPV 161 Query: 181 PFFKDYKTVAEINGCHFNVTEDTI---DGLKEFDKYKTRILDSGINCKKHPWLYFPLAKS 237 + + +I+ C V + E +K K I + NCK +Y+ K Sbjct: 162 K----HSEIGKIDHCSVEVLTTSHYVKHTDDELEKIKPLIETARFNCKVPATIYYFNTKM 217 Query: 238 SPGM--------IVMACNKNYNQHEVANCLT 260 + C + + A C Sbjct: 218 LVSRAGMNNDISFLSYCPASRLKGVEAQCEN 248 >UniRef50_Q5E5W5 Transcriptional regulatory protein n=2 Tax=Vibrio fischeri RepID=Q5E5W5_VIBF1 Length = 285 Score = 114 bits (286), Expect = 2e-24, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 83/242 (34%), Gaps = 12/242 (4%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M+ II N+ PE R L + V+L LLL+ V++ F WE Sbjct: 1 MHKIIIANLVLEPESRTLTNQF--GHKVMLRPLPYEVFRLLLDQQGKSVSRDQLFNVCWE 58 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 GM V L IS +RR + + I TV + G+ + + I + Sbjct: 59 --GMVVTDQALTNVISNLRRNLVQL-KAENVTIKTVSKIGYLLAIEQPITIVENTNEIAP 115 Query: 121 HTHNAPPAIKVNAGYKE---SIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177 + P+ N K+ + A ++L + F++ ++ Sbjct: 116 LKKQSEPSSVANKIKKKEAFNRKTADAILKQLLTKPSVKSVSCCFFLVAMIIVGVVYQRY 175 Query: 178 QPKPFF--KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLA 235 P F + +N F + T + +K K+ I + + + +Y + Sbjct: 176 ISIPHFLVSNNYEHFSVNNTDFYLLNKTKEKTD-IEKIKSGIESLNL-AECNANVYIRMY 233 Query: 236 KS 237 S Sbjct: 234 DS 235 >UniRef50_A6AKR5 Transcriptional regulatory protein, C n=3 Tax=Vibrio RepID=A6AKR5_VIBHA Length = 250 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 93/236 (39%), Gaps = 22/236 (9%) Query: 10 EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69 + P L N + + + S+ L+LLLE P+VV +QD W E + Sbjct: 3 LYNPIKNTL---SNGEKTIKIGYRESQILTLLLERSPEVVKKQDIVQFAWGNE--YIGET 57 Query: 70 TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAI 129 +L ++IS++R+ F +G I TVP+ G+++ D+ + ++ T NAP Sbjct: 58 SLAKSISVLRQSFIKIGIKDSP-ILTVPKVGYRLVEDVLLNECLV-------TINAPREE 109 Query: 130 KVNAGYKESIGGAKNFNNKI-LKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKT 188 V A +E+ A K +++ +++ LS ++++ P F Sbjct: 110 IVPAKPEETSQPAYAAKQKPGYRNLVCYVVSLSFLFAAVLMVASKYHSSYSHPQFSKLLN 169 Query: 189 VAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVM 244 + ++ T L + + + ++ C +Y G+ + Sbjct: 170 EHTVGSLEVYMSPSTSLSL----RVQELLAENQCQC----VVYIEENNGFSGLSWL 217 >UniRef50_D2T5X7 Uncharacterized protein yqeI n=2 Tax=Erwinia pyrifoliae RepID=D2T5X7_ERWPY Length = 268 Score = 114 bits (285), Expect = 3e-24, Method: Composition-based stats. Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 14/269 (5%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 I D + R L S + +V+L T A RCL+ L +A V++Q+ W Sbjct: 4 NITIGDLVRLDRRTRSL-SRTHDGKSVMLPTAACRCLAALAQAKEQVLSQEQLMDIGWRH 62 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 G+ V N++ I+ IRR + + V R G+++ I +TD Sbjct: 63 AGVEVTDNSVRVMITKIRRALVTLKVDERIQLIAVTRSGYRL-----IVRADRPGATDLS 117 Query: 122 THNA-PPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 A ++ +++ + I + L WL + Sbjct: 118 AAKRGVQAARILPAAGGDALPVIAPRSRLQRRIAAGGAGLVLGSCAVAVTGWLLTIDPVP 177 Query: 181 PFFKDYKTVAEINGCHFNV----TEDTIDGLKEFDKYKTRILDSG--INCKKHPWLYFPL 234 + + V + ++ Y L+ IN + +LY Sbjct: 178 VHYIRWYDGKAPPQSEVWVPEKAQPEKQQVIQTLQLYTQFALNKEGDINAEHARYLYITT 237 Query: 235 AKSSPGMIVMACNKNYNQHEVANCLTLSY 263 KSSP + ++AC NC + S+ Sbjct: 238 GKSSPHLGLIACVTPLR-DSENNCESYSF 265 >UniRef50_Q15PB9 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15PB9_PSEA6 Length = 756 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 10/227 (4%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + I D P ++ + + + L A L+ L + DVV+Q+D +VW++ Sbjct: 5 YWIGDFFVNLPRNQ----ITHNEHTQTLPPKALAVLTYLAKHQGDVVSQEDLLNQVWKD- 59 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 V N+L + I+ +R+ F G LI T ++G+ + I ++H + D+ T Sbjct: 60 -TVVSPNSLQRCIAQLRKAFGDDG-KAQGLIKTHAKKGYSLEAAIRWEDHQKRNVGDSVT 117 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 + P +A + F+ K + + +++ A VI S LW ++ P Sbjct: 118 LDKSP-PNQHAKLGTNKVVKAGFSAKHIFVLSLFTVLVFALVISITST--LWPSSVHNPS 174 Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPW 229 + +I + K+ + C H W Sbjct: 175 PASPLLIDDIRLLTSTDNRELASAYSPDGKFIVFQRFPEVMCTSHLW 221 >UniRef50_B2VGZ0 Transcriptional regulatory protein n=1 Tax=Erwinia tasmaniensis RepID=B2VGZ0_ERWT9 Length = 190 Score = 114 bits (284), Expect = 4e-24, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 1/182 (0%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 MY+I+N I+F+P+ +L ++ D ++VL+ PASR L L+ VV + VWE Sbjct: 7 MYFILNKTIKFYPDTNELAIINEQDNSIVLSKPASRLLLTLINHLNVVVTRDYLLKTVWE 66 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + G N LY IS +R+ F ++ S++ TVP+ G ++ ++ N+ Sbjct: 67 DYGYTPSNNNLYMAISELRKSFSSLN-GGESILVTVPKVGLRLEALVDALEKGGNAEEKK 125 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 T + K + LK + +S +I + A +L+N + Sbjct: 126 ETRTETEIEPLAEEKPGEEEEKKISSIYRLKSNTGVKVKISLALILSSLAIFLFNLEENV 185 Query: 181 PF 182 P Sbjct: 186 PI 187 >UniRef50_D2TAS4 Cholera toxin transcriptional activator n=2 Tax=Erwinia pyrifoliae RepID=D2TAS4_ERWPY Length = 146 Score = 113 bits (283), Expect = 6e-24, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 1/117 (0%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN + F + L N+D + L+ P +R L+ L+ +++ ++D +VWE Sbjct: 11 MNYIINHYLCFDSSNGLLKLTDNSDSTLQLSRPGTRLLTQLIIHAGEIMTREDLIKKVWE 70 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS 117 + + + L +IS++R+ F + T +I T+P+ GF++ ++I+ S Sbjct: 71 DHDLTPSGSNLSNHISLLRKAFSQLAVT-EIMITTIPKVGFRLDAVVSIEKTAHRQS 126 >UniRef50_Q12S47 Transcriptional regulatory protein-like protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12S47_SHEDO Length = 762 Score = 113 bits (282), Expect = 7e-24, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 76/248 (30%), Gaps = 28/248 (11%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + I ++ + + ++ A L+ L E VV+ VW + Sbjct: 5 YSIGGFFI-DLSRNQIT---QNNQSQIIAPKALAVLTYLAENQGKVVSHDALLENVW--Q 58 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI----NIQNHVINSST 118 G V NTL ++I+ +R+ G I T ++G+ + D+ NI++ +N++ Sbjct: 59 GTVVSPNTLQRSIAQLRKALGDDGKV-QVYIKTHAKQGYSLECDVRWHDNIESPPLNAAQ 117 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILK-----------------HIKSHLIMLS 161 + + E +K ++ K + + Sbjct: 118 ENIVDTPTMSETNALAMSEDNTQSKAQHHSHDKDQSKSATTTDNAKPSKLTVMPLFTLFG 177 Query: 162 AFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221 ++ +L K F + + + + F F +Y + Sbjct: 178 IIILAYIGYQYLMPQPPSKLSFGELRLLTTTDNKEFASIYSPDGQYVVFHRYSAVFCRNN 237 Query: 222 INCKKHPW 229 I K Sbjct: 238 IWAKNTKT 245 >UniRef50_B6XAC7 Putative uncharacterized protein n=2 Tax=Providencia RepID=B6XAC7_9ENTR Length = 272 Score = 113 bits (282), Expect = 7e-24, Method: Composition-based stats. Identities = 46/276 (16%), Positives = 92/276 (33%), Gaps = 16/276 (5%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++IN NI + L + D + LTT +R L +L++ +V+ ++ +RVW+ Sbjct: 1 MKYLIN-NIIYDSHQGLLYRDNIDDA-IKLTTTLNRLLLVLVQNNGEVLDRETLLSRVWD 58 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST-D 119 E N L +IS++RR + +I T+P+ G K + + +N Sbjct: 59 EHNQVASDNNLNSSISVLRRHLSSF--FEEEIITTIPKVGIKFDAKLQSLSTKLNQKPHQ 116 Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179 N E+ ++ + K +I ++ + V+ + Sbjct: 117 EEQPNILLKESEQPSIIENSPKKQSLSVKEKSYILNNRYIELTLVVIIIFCLLYLFKSYF 176 Query: 180 KPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTR---ILDSGINCKKHPWLYFP--- 233 +Y V I+ C + + I+CKK L++ Sbjct: 177 FATRTEYPEVGRIDQCSIRYINSYHKPDMTTINFTDLQNQLTRLNIDCKKPATLFYYNVG 236 Query: 234 -----LAKSSPGMIVMACNKNYNQHEVANCLTLSYR 264 + + C +C + Sbjct: 237 IVTNDKNLYDNFLFLSYCPTTPKDSATVSCENFYVK 272 >UniRef50_Q1IIR6 Transcriptional regulatory protein-like n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIR6_ACIBL Length = 469 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 6/190 (3%) Query: 1 MYWIIN-DNIEFWPEHRKLISVH--NADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTR 57 M +I + + F P L + V L L LL+ ++V + + R Sbjct: 1 MTDLIGPNRLRFGPYEADLHTRELWKFGTRVKLVGQPFDILELLISRPGELVTRDELRER 60 Query: 58 VWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN--IQNHVIN 115 +W +E + L ++ +R D I T+PRRG++ + + ++ + Sbjct: 61 LWPKETFVDFNHGLNAAVNKLRDVLCDSADDPK-FIETLPRRGYRFISKVERGVEEPIPV 119 Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWN 175 + T T P A A + + S V+ A+ A+ + Sbjct: 120 AETSPPTPLVVPTPAELAPEPRYESPAITVERSLGRTKWSWGAAALLMVVIAFIAFLAIS 179 Query: 176 NNQPKPFFKD 185 +P + Sbjct: 180 KISREPSESE 189 >UniRef50_B4SI58 Transcriptional regulator domain protein n=3 Tax=Stenotrophomonas RepID=B4SI58_STRM5 Length = 774 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 4/165 (2%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + R++ V A + LT A L +L+ VV +++ F VW + Sbjct: 17 GDCVITLSSREVE-VEGARRPLRLTPKALGVLRVLMRQPGRVVTREELFAEVWPD--TLP 73 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN-SSTDAHTHNA 125 + L Q ++ +R+ F D + I T+ + G+++ + + + V DA Sbjct: 74 TNDVLTQAVTQLRKVFANDDDNGQAYIETIAKSGYRLLVPVLVLDDVAPVVEVDAVPEVM 133 Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSA 170 P +A ++ A + + + + L +L ++ A Sbjct: 134 PALAGASAIPTATVLPAPSRRSGWRQLRRQLLWVLGVLMLAALVV 178 >UniRef50_A6XSQ7 ToxR2 n=9 Tax=Vibrio RepID=A6XSQ7_VIBCH Length = 183 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 71/176 (40%), Gaps = 12/176 (6%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 +++ + + F R++++ D + L + L LL E V+ +++ +VW + Sbjct: 4 NYLLGNQVIFDTLKREVLTT---DKIISLGGREASILKLLCENANTVITKEEINDKVWGK 60 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND------INIQNHVIN 115 + V +L + IS +R+ + + I T+P+ G+ + + + ++ Sbjct: 61 --VFVSETSLTKAISNLRKSLQLIDGVMCE-IKTIPKEGYMLILEGESLGLMVTEDEPPL 117 Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171 + + A ++ +K N +IK ++L+ F S++ Sbjct: 118 EVKRIESKDLAMIKAPAANHRFLPALSKTEENTHSGYIKPSWLLLAVFSSALISSF 173 >UniRef50_A5L317 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L317_9GAMM Length = 295 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 42/250 (16%), Positives = 89/250 (35%), Gaps = 15/250 (6%) Query: 5 INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64 I D++ E R L H AD+ V + + L LL+ V++++ F W +G+ Sbjct: 7 ITDSVTIDIEIRTLTH-HPADITVSMRPLPFKVLLYLLKHQDRCVSREELFEECW--QGV 63 Query: 65 RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS-------S 117 V +L IS IR+ F+ + L T+ ++G+ + Q + Sbjct: 64 LVTDQSLTNTISYIRKVFKNLDTNELEL-KTISKQGYLLVISPKQQTLKVEEIKPFAEAE 122 Query: 118 TDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177 +A I + N K + L + + ++ AY+ + N Sbjct: 123 VQLELSDAGTGIDEEKIKPDLQQPVSNQKTKSKFPRQFTLNLCALWLGIILVAYYSIHYN 182 Query: 178 QPKPFF--KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLA 235 + + F KD V + + + + + I + ++ +Y + Sbjct: 183 KEQAPFLDKDNYQSYPFGSATLYVHDQSNTITEP--EMTSYINNLELSQCNVKSIYIRIT 240 Query: 236 KSSPGMIVMA 245 S+ +++ Sbjct: 241 NSAFRDNIIS 250 >UniRef50_B2VCE9 Probable transcriptional regulator n=1 Tax=Erwinia tasmaniensis RepID=B2VCE9_ERWT9 Length = 134 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 1/109 (0%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +IIN I F L S++N+ V L+ P +R L+ L+ +++ ++D +VWE Sbjct: 1 MNYIINKKIYFNSLKGLLNSMNNSVPMVQLSKPGARLLAELIIHSGEIMTREDLIKKVWE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI 109 + + + L +IS++R+ F + D T +I TVP+ GF++ +I+ Sbjct: 61 DHNLTPSGSNLSNHISLLRKAFLQL-DMTERIIITVPKVGFRLEAEIDT 108 >UniRef50_B4EUN0 Putative membrane protein n=2 Tax=Proteus mirabilis RepID=B4EUN0_PROMH Length = 274 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 102/270 (37%), Gaps = 13/270 (4%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++IND+I F+ + L S +L S+ L L+ ++V Q++ F W ++ Sbjct: 2 YLINDDIIFYSDKNLLFSKKLNKEKKILAPS-SKMLIHLIT-VNELVTQRELFRIGWGDK 59 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 + + YQNI ++R+ F + +I TVPR+G+ I+++I+I+ N+ D Sbjct: 60 EKFITNSAFYQNILLLRKAFNELDIDDEIVI-TVPRKGYIINHNISIEKLSDNNIQDIKL 118 Query: 123 HNAPPAIKVNAGYKE-------SIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWN 175 N + KE +I + + I K S +I + Sbjct: 119 INENKISDIPHIKKEIEEDINTNINNKDHSLSSIKKTSISLSKKKLFIIIFTLIVLFFVV 178 Query: 176 NNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKT-RILDSGINCKKHPWLYFPL 234 + + C + + ++ K I + + + ++Y Sbjct: 179 IFTFNYLDSRKHKLYNYSNCGTYKKYNLFCNKEILNEEKENLIDNYISSYSDYNFIYITE 238 Query: 235 AKSSPGMIVMACNKNYN--QHEVANCLTLS 262 + S ++ C K ++ C+++ Sbjct: 239 SDSYSRTSLILCKKKFSPINFLHNQCVSIY 268 >UniRef50_Q1YZ13 Transcriptional activator CadC n=1 Tax=Photobacterium profundum 3TCK RepID=Q1YZ13_PHOPR Length = 509 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 77/228 (33%), Gaps = 22/228 (9%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 + I DN F P K I + +VV+ S L L + ++ + VW Sbjct: 5 RYKI-DNWIFIPSENKCIL---DERSVVIDNRLSNLLLFLCQHPHQTFSRDELINEVW-- 58 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 G + + Q+I +R+ ++ H I T+P+RG+K+ ++ IQ+ +++ + Sbjct: 59 NGSFLTDQVITQSIFELRKILKSNQRHPHGYIITIPKRGYKLDAEVEIQDDSLSTEDNNQ 118 Query: 122 THNAPPAI------------KVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYS 169 A+ +V + + + LI ++ A Sbjct: 119 DTENAHALLNTAHTNKEAVREVPQPSSAPSYQKEREAAHQRRSSRGKLIAFCCLLLVATL 178 Query: 170 AYWLWNNNQPKPFFKDYKTVAEIN----GCHFNVTEDTIDGLKEFDKY 213 A + P+ + + + + +T D + Sbjct: 179 ASLFYYVKTPESRATSTRKFSSLEPSVINVSIKIDSNTTDPKTTRIEI 226 >UniRef50_P23890 Transcriptional activator cadC n=99 Tax=Enterobacteriaceae RepID=CADC_ECOLI Length = 512 Score = 111 bits (278), Expect = 2e-23, Method: Composition-based stats. Identities = 30/206 (14%), Positives = 68/206 (33%), Gaps = 12/206 (5%) Query: 17 KLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNIS 76 + + + L L + +V+++ + VW+ V + + Q+IS Sbjct: 16 SINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS--IVTNHVVTQSIS 73 Query: 77 IIRRGFRAVGDTTHSLIATVPRRGFKIHNDI---------NIQNHVINSSTDAHTHNAPP 127 +R+ + + + IATVP+RG+K+ + I +A P Sbjct: 74 ELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSP 133 Query: 128 AIKVNAGYKESIGGAKNFNNK-ILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDY 186 + +N + +K +LS + A A+ + P + Sbjct: 134 SHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKSRIL 193 Query: 187 KTVAEINGCHFNVTEDTIDGLKEFDK 212 +I+ N + ++ + Sbjct: 194 LNPRDIDINMVNKSCNSWSSPYQLSY 219 >UniRef50_Q21GQ2 Transcriptional regulatory protein-like protein n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21GQ2_SACD2 Length = 425 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 70/207 (33%), Gaps = 19/207 (9%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + ND +E + ++ A L V + + L+E +V++ + F ++W+ Sbjct: 1 MSFHFND-VEIDTKQYRITC---AGLTVSVEPKVFDIIVYLIENRNRLVSRDELFEKIWD 56 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 V TL +I R+ G+ I TV RG++ ++++ Sbjct: 57 ARA--VSDTTLSNHIKSARKALGDDGE-QQHTIKTVRGRGYQFIAEVSVSALTDE----- 108 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 P ++ E ++ N K + LI V+ + + + Sbjct: 109 ------PIAASSSAPSERSAPVQSTNRFQPKATIAFLIFGCLCVLTLIGYLYNLSRT-IE 161 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGL 207 P + + + TI + Sbjct: 162 PQQPNLSPLNPTLSPPLHAQNTTIPYI 188 >UniRef50_Q47YD8 Putative transcriptional regulator n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47YD8_COLP3 Length = 712 Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 69/191 (36%), Gaps = 7/191 (3%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++ ++I +++ LI +++L L + ++ + + VW Sbjct: 1 MRYLEFNHITIDTQNQLLIR---DGESIILAPKVYDLLIFFCKNPARIITKDELMDEVW- 56 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 G V N + + + +R+ + I TVPR+G+++ + N + + + Sbjct: 57 -TGTLVTENAISRTLVKVRKALGD-DPKSPQFIITVPRKGYRMVTEFNGSDKCQYNEQN- 113 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 T + N S + NK K + S + +I A S Y+ N Sbjct: 114 TTEQTSTNKENNNTITTSFSSVNSTKNKKPKTLFSLFAISCTLLIVAVSFYFSIQQNIEI 173 Query: 181 PFFKDYKTVAE 191 K K + Sbjct: 174 IATKQLKPLTR 184 >UniRef50_C1M6R9 Predicted protein n=2 Tax=Citrobacter RepID=C1M6R9_9ENTR Length = 227 Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats. Identities = 39/240 (16%), Positives = 77/240 (32%), Gaps = 26/240 (10%) Query: 29 VLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDT 88 L A++ L LL+ ++ ++ + V++ G R L Q+IS +R+ + G Sbjct: 3 TLNNVATQLLLYLLQNGKEISSRDEILRNVFQHNGARATDANLNQHISFLRKAITSTG-H 61 Query: 89 THSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNK 148 LI T+PR GF++ + ++ + + A K Sbjct: 62 PAELIVTIPRIGFRM----------------SDASINIQQLEESQAPTRIVNVALTPRKK 105 Query: 149 ILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLK 208 + L + +A+ W N+ + C ++ + + Sbjct: 106 KRNLWPVTITTLITGIAVLATAWLTWIPNEIAMTDAAILRTIDYEQCRVHILGNALTDTI 165 Query: 209 EFDKYKTRILDSGI--NCKKHPWLYFPLAKSSPGM----IVMACNKNYNQHEVANCLTLS 262 K GI NC LY S+ + C N + +C++ Sbjct: 166 TEKKALDIFKSVGINPNCSYPKDLYLNTWASNHNLVEWSFAAECGLNLGYY---HCISQY 222 >UniRef50_C9PHD6 Transcriptional activator ToxR n=1 Tax=Vibrio furnissii CIP 102972 RepID=C9PHD6_VIBFU Length = 203 Score = 110 bits (275), Expect = 5e-23, Method: Composition-based stats. Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 3/149 (2%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 +IN F + L + D +++ SR L+LL V++++D + +VW E Sbjct: 7 KVVINSRFLFDAVEKSLTDAY--DEKIIIGDNESRILTLLTSHPNAVLSREDIYQQVWVE 64 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 G +V ++L Q+IS++R+ I T R G++ ++ VI Sbjct: 65 RGNKVDDSSLTQSISLLRKVLGDKATNPE-YIKTEARIGYRFIAPVDPVYSVIPLEELVE 123 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKIL 150 N + + N++ Sbjct: 124 VTEQNVQPAANTRQTPAYPEQRYINSEFR 152 >UniRef50_D0YIE0 Transcriptional regulator, CadC n=6 Tax=Klebsiella RepID=D0YIE0_KLEVA Length = 224 Score = 110 bits (274), Expect = 6e-23, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 1/113 (0%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 +IN + F +L + V L P +RCL LLL+ V+++ +F VWE G Sbjct: 21 MINHEVIFNANMNELRPLSGDGECVSLNAPTARCLLLLLQNSGKVISRDEFLAAVWETRG 80 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS 116 + V NT YQNIS++R+ G + +I TV ++GF + D I Sbjct: 81 VVVSQNTFYQNISLLRKSLLKAGLSA-DIIITVRQKGFSVAPDTLIIPLSDEE 132 >UniRef50_B1KKU4 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KKU4_SHEWM Length = 711 Score = 110 bits (274), Expect = 6e-23, Method: Composition-based stats. Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 13/220 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + +L + L A L+ L + VV+Q + + VW V Sbjct: 8 GDFFVDLSRNQLT---QKQQSQTLPPKALAVLTCLAKNKASVVSQDELLSHVWPNS--VV 62 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126 NTL + I+ +R+ G I T ++G+ + D++ Q N++ Sbjct: 63 APNTLQRCIAQLRKALGDDGKVQR-YIKTHAKQGYSLEVDVHWQQPEPNNA-------NK 114 Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDY 186 + + + + + +K + + S +I L V G + K Sbjct: 115 DSSPLPTTLAVQVEDSPHQPSKTVSRLISAVIALLIIVFGVIGYQFFPLTASTPLVVKSM 174 Query: 187 KTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKK 226 + + + F +Y + S + K Sbjct: 175 QPLTSTDNRELASIYSPDGEYVIFMRYPEVLCTSHLWAKN 214 >UniRef50_D0XI00 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XI00_VIBHA Length = 267 Score = 110 bits (274), Expect = 6e-23, Method: Composition-based stats. Identities = 38/239 (15%), Positives = 84/239 (35%), Gaps = 21/239 (8%) Query: 6 NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65 N I + P L N++ V + S+ L+LLLE P VV ++D W E Sbjct: 17 NRMILYNPIKNTL---SNSNKTVKIGYRESQILTLLLEHSPAVVEKRDIVQFAWGNE--Y 71 Query: 66 VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125 + +L ++IS++R+ F VG I TVP+ G+++ + + ++ Sbjct: 72 IGETSLAKSISVLRQTFTKVGMKESP-IVTVPKVGYRLVEGVLLNECLV-------AATP 123 Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKD 185 P ++ N + K++ +++ L + + +++ P Sbjct: 124 PDEKVQQKSVQQPTPPLPNKHETNYKNLACYIVSLGILFAASLVSASKFHSKYSHPQRNK 183 Query: 186 YKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVM 244 + +T + + + +C +Y + + + Sbjct: 184 ALNEHTVGTLEVYTDPNT----QLSTHLEQLLAQHQCHC----VVYIEENEQFSELSWL 234 >UniRef50_B3PJR7 Putative Transcriptional regulator CadC n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJR7_CELJU Length = 499 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 56/186 (30%), Gaps = 15/186 (8%) Query: 6 NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65 D+ L S D V L L + ++ +V+ ++ +W +G Sbjct: 23 IDSWRLCVHSNSLSS---GDQRVELEHRLVALLLMFIDHPGEVLEKERILATIW--QGKV 77 Query: 66 VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125 V ++L IS +R+ + I T+P G++ +++ Sbjct: 78 VNDDSLAVAISHLRKALGD-NPRSPRYIKTIPGVGYQFIA---------SAAPVEEAPAT 127 Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKD 185 P + A I + + + + +L A ++ + Y + Sbjct: 128 PAPVPEAAPLNPVIAERGYPHRRFPRSPGLWIPILLACLVLLTAWYARDEKKPVSSPDEL 187 Query: 186 YKTVAE 191 Sbjct: 188 LVLAGT 193 >UniRef50_B2VJM5 Probable transcriptional regulator n=1 Tax=Erwinia tasmaniensis RepID=B2VJM5_ERWT9 Length = 218 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 67/218 (30%), Gaps = 21/218 (9%) Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 M + +LYQNIS +RR G +I T+PRRGF + I T+ Sbjct: 1 MEPTSTSLYQNISNLRRALNKSGLN-EGIIRTMPRRGFLLSPLTEIVRETYTPDTETLPD 59 Query: 124 ----------------NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGA 167 + + S K +K + ++ I + Sbjct: 60 LTTAGGVDRAEKEVFLPPTSEVSEKPTTRRSDTKTTASIEKKIKRMAAYGI-GLMLIFLL 118 Query: 168 YSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKH 227 A N + + + C V D ++ + I+C+ H Sbjct: 119 ILAPLYLNKAETLQNNSLFVPFMHSDRCSIFV---NRDSRLSSEEIHKFVSVLNISCQTH 175 Query: 228 PWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSYRE 265 + Y K++ V C + + E A C + Y Sbjct: 176 RYFYITTYKNADRASVFMCQNSLLEKENAWCHSDYYIG 213 >UniRef50_D0I6A9 Putative transcriptional activator ToxR n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I6A9_VIBHO Length = 185 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 68/181 (37%), Gaps = 9/181 (4%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 +++ + + F R++++ D + L + L LL E V+ +++ +VW + Sbjct: 4 NYLLGNQVIFDTLKREVLTT---DKIISLGGREAAILKLLCENANMVITKEEINDKVWGK 60 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH---NDINIQNHVINSST 118 + V +L + IS +R+ + + I T+P+ G+ + ++ + Sbjct: 61 --VFVSETSLTKAISNLRKSLQLIDGVMCE-IKTIPKEGYMLILEGENLGLMVTEDEPPL 117 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178 + + + + + N + S L+ S F + SA L + Sbjct: 118 EVKRIESKDLAMIKPPSANNRMLSSNVIGQSQHPANSVLMKPSWFFMTILSAVLLSSITS 177 Query: 179 P 179 Sbjct: 178 S 178 >UniRef50_Q2S7R1 DNA-binding winged-HTH domains n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S7R1_HAHCH Length = 706 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 13/173 (7%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 + I F P ++ + L + L+LL+ VV ++FF +VWE Sbjct: 29 EYNIAGVWLFNPRNQTIARA--DGLVHQVRAKTCDVLALLIRHHDRVVTTEEFFDQVWE- 85 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHV------IN 115 G V N L ++I +R F + IAT P+RG+++ + + + Sbjct: 86 -GRFVGENVLKRSIFELRHIFED---KSRDYIATAPKRGYRLKAAVALVRPDPPEPETMT 141 Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY 168 A AP + V+ +I A ++ LK + L + G Sbjct: 142 PPASAEAEQAPSDVTVSPAPVATIPTASWYSRLDLKRLAVGGFFLFLLIWGMT 194 >UniRef50_Q1IKQ5 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IKQ5_ACIBL Length = 945 Score = 107 bits (268), Expect = 3e-22, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 1/145 (0%) Query: 19 ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78 S+ +V L L LLLE ++V++++ R+W + + L I + Sbjct: 23 RSLTKGGASVRLQDQPFEVLGLLLERPGEIVSREEIRQRLWSSDTFVEFDDGLNTAIKKL 82 Query: 79 RRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKES 138 R + TVPRRG++ +++ + V ++ T + A + + + Sbjct: 83 RTALGDSALNPR-FVETVPRRGYRFIAPVSVLSPVATPEPESQTEDVVIASRERSQITIT 141 Query: 139 IGGAKNFNNKILKHIKSHLIMLSAF 163 F + + + + + Sbjct: 142 QPHHPVFWSTVALGLAISFLAGGWY 166 >UniRef50_UPI00018266EF transcriptional regulator, CadC n=1 Tax=Enterobacter cancerogenus ATCC 35316 RepID=UPI00018266EF Length = 184 Score = 107 bits (268), Expect = 3e-22, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 4/126 (3%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVV-LTTPASRCLSLLLEAFPDVVAQQDFFTRVW 59 M +++ D + + E + D LT A+ + LL+ +VV ++ FF+ VW Sbjct: 1 MKYLLADVLVYNDEEGTFSHIDAPDDAHQILTGTANAVMKLLVRHHGNVVERELFFSEVW 60 Query: 60 EEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTD 119 + G++ N+L Q ISI+R+ I TVP++GF + DI +Q + D Sbjct: 61 DARGVQGSNNSLNQYISILRKLLAGF-VPEKPAIVTVPKKGFMLSADIRVQ--PMPDPAD 117 Query: 120 AHTHNA 125 H+ Sbjct: 118 KHSDAP 123 >UniRef50_C9QI52 Cholera toxin transcriptional activator n=1 Tax=Vibrio orientalis CIP 102891 RepID=C9QI52_VIBOR Length = 229 Score = 107 bits (268), Expect = 3e-22, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 73/215 (33%), Gaps = 11/215 (5%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++IND + S+ + + + L+ + V+++ + VW + Sbjct: 2 FLINDAHVLDENGSYIHSL-KSHIRHPIGVNELSLLNYMFANQGQVLSKHELMHEVWHKR 60 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 G+ V +++L +IS RRG +I T G++ + + + Sbjct: 61 GIVVESSSLLHSISTCRRGLED---KAGEVIRTERGIGYEFTGSVKKITSISEVTEPLEP 117 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 P IK E N ++ IK+ I++ A +G A + + + Sbjct: 118 VIETPPIKELETKVEV---TAQLNAGHIRVIKALGILILAIFVGYIGASHFYKSPLIIGY 174 Query: 183 ----FKDYKTVAEINGCHFNVTEDTIDGLKEFDKY 213 +K + + G T+ ++ Sbjct: 175 KVTSYKQCSYMPQQQGEKVFYQNPTLYQFEKLSLL 209 >UniRef50_B8CR40 Transcriptional activator CadC n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CR40_SHEPW Length = 512 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 74/204 (36%), Gaps = 19/204 (9%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + I DN F P +L+ + +++ S L L + +++ + VW + Sbjct: 6 YRI-DNWFFVPHENRLVL---DEQEILIDNRLSNLLLFLCDNPRTTLSRDEIIDHVW--K 59 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNH---------- 112 G + + Q I +R+ + I TVP+RG+K+ D+ + N Sbjct: 60 GSILTDQVITQAIFELRKILKTNNQHLQGYIITVPKRGYKLDTDVEVVNEVKTAPTVLNA 119 Query: 113 ---VINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYS 169 ++ S+ + ++ A + E+ + S L ++ A + A Sbjct: 120 AHKIVESNAEQKSNFAAKEATKHKKATENEEPTTAVESAKSVRFSSSLAIVGALIAVAVL 179 Query: 170 AYWLWNNNQPKPFFKDYKTVAEIN 193 + + K ++ A++ Sbjct: 180 VVFFNRADIGKQPSVEHVVYADLE 203 >UniRef50_Q1Z6V5 Putative uncharacterized protein n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z6V5_PHOPR Length = 285 Score = 107 bits (267), Expect = 4e-22, Method: Composition-based stats. Identities = 33/254 (12%), Positives = 77/254 (30%), Gaps = 29/254 (11%) Query: 9 IEFWPEHRKLISVHNADLNVV---LTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65 +F L+ + + L+ + LS L++ +V + VWEE+ + Sbjct: 8 WQFNATKNTLVHNGGSSGEIKTFSLSPKEADVLSYLIDNASKLVTKDALVEHVWEEQEL- 66 Query: 66 VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125 ++ +S +R FR + LI T+ ++G+ ++ + + Sbjct: 67 -NEQSILNVMSKLRSIFRQFDE--GELIKTIRKKGYVFEVSPEDVQYIRIELAKENPVLS 123 Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP----KP 181 I + +++ S L +L+ + Y + N + Sbjct: 124 ESEIAEA--------PQPVYQYLFSRYLWSVLFILTIIFLVIGGYYQYLSKNNDYDAYEI 175 Query: 182 FFKDYKTVAEINGCHFNVTEDTI----------DGLKEFDKYKTRILDSGINCKKHPWLY 231 KD + +G V + D + +F +Y + + +Y Sbjct: 176 NQKDIIYINNPDGEFVKVIFSSRGGSLTKRQYKDVIDKFSQYYHAVQTLPPESITYKTVY 235 Query: 232 FPLAKSSPGMIVMA 245 + Sbjct: 236 VDVFHIHKTFFASI 249 >UniRef50_C0Q6W1 Possible transmembrane regulator n=32 Tax=Enterobacteriaceae RepID=C0Q6W1_SALPC Length = 259 Score = 107 bits (267), Expect = 4e-22, Method: Composition-based stats. Identities = 36/263 (13%), Positives = 75/263 (28%), Gaps = 21/263 (7%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++I+ + E L A ++ ++ L E + + D VW Sbjct: 17 NYLIDKRVILDCERMTLSC---AGESITISESERSLLIAFYE---GLFKKDDLINYVWGR 70 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 +G+ V + Y+ I+ +R F +G S + T PR G + I + Sbjct: 71 KGVVVSDASYYKLINQLRGSFDKIGLKGAS-VVTRPRVGVLLSVSIEPLSDEAQDMPLPA 129 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 + I N+ +L F+I + Sbjct: 130 VAETELSTVEVRHDDTIIPPIPGAVNRKDWLYFCLAALLMFFMI-------YKVKGENID 182 Query: 182 FFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGM 241 +F +G F L + + + + + I+ + +Y Sbjct: 183 YF---TLNGSYDGYTFYSVGHDKTHLTDIVEAYSEMSN-EIHKQNGKIIY---YIRVSNT 235 Query: 242 IVMACNKNYNQHEVANCLTLSYR 264 + N C+++ R Sbjct: 236 NIFVQCLNQLDIAEPKCISIKER 258 >UniRef50_A4XNQ3 Transcriptional regulator, CadC n=1 Tax=Pseudomonas mendocina ymp RepID=A4XNQ3_PSEMY Length = 277 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 80/199 (40%), Gaps = 19/199 (9%) Query: 11 FWPEHRKLISVHNA-DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69 F+P +L V + + + L SR L L+ +VVA+++ + W + V Sbjct: 32 FYPALYQLTLVRSGIEEKIDLGYSGSRLLERLVREPGEVVAREELMSHAWADR--VVGQG 89 Query: 70 TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAI 129 +L Q I +R+ + + +I T+PRRG+ ++ + I+ +AP Sbjct: 90 SLNQQIYTLRQILGD--EKSREIIQTLPRRGYLLNPSYLVYPPSIDDIGAVQEADAP--- 144 Query: 130 KVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYW-LWNNNQPKPFFKDYKT 188 G NF ++ + S L++LSA + A + L+ + P Sbjct: 145 ----------GTPPNFLHRHSRRRTSWLVLLSALGLMAVGLFVALYQFSLPARLHSSELN 194 Query: 189 VAEINGCHFNVTEDTIDGL 207 + +I+ + + + L Sbjct: 195 LGQISLLYVDQDAQRLQQL 213 >UniRef50_Q7VR33 Transcriptional regulatory protein, C terminal domain n=2 Tax=Candidatus Blochmannia RepID=Q7VR33_BLOFL Length = 212 Score = 107 bits (266), Expect = 5e-22, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 8/199 (4%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPD--VVAQQDFFTRV 58 M +II+ NI F L S+H++ ++ L+T A R L L++ V ++ FT V Sbjct: 1 MKYIIHSNIAFDTTEYILTSLHDSHASIKLSTSAGRILEELIKNRNTGLPVTREHLFTTV 60 Query: 59 WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118 W+ G+ L Q +S+IR+ +G + S+I TVP+RG KI+N + I+ NS Sbjct: 61 WKTHGLEPSNGNLNQQVSLIRKTLTLLGLNSSSII-TVPKRGLKINNQLIIEAVHNNSPN 119 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178 T N + + + ++K LI+ + +I + N Sbjct: 120 PQSTVNP-----IENQINNTPPLPNTILKNTITYVKYILILTAMLIIIFSIGFIYLYNKT 174 Query: 179 PKPFFKDYKTVAEINGCHF 197 K + + C F Sbjct: 175 NNTKLYCCKEINSCDICDF 193 >UniRef50_D2T7N3 Probable regulatory protein embR n=3 Tax=Erwinia RepID=D2T7N3_ERWPY Length = 299 Score = 107 bits (266), Expect = 6e-22, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 59/176 (33%), Gaps = 10/176 (5%) Query: 5 INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64 I ++ L+ + + L + L +L E V++++ VWE Sbjct: 6 IINHWSVDFASGTLLHQSSGEQR-RLGEYQLKLLRVLAENAGKAVSREELNNLVWERR-- 62 Query: 65 RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHN 124 + N+L I +R G +I T+P++G+ + + + TD + Sbjct: 63 VIGNNSLPNAIHALRIALEDDG-KQQRIIRTMPKKGYILEAEFCEFITPLRPETDLAEAH 121 Query: 125 APPA------IKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLW 174 +P V A + + + H + ++ V+ W+ Sbjct: 122 SPREPFGDAKPVVLAPHTPAAAPQPEHRQRPSVHPLWYWLVPLQVVVLITLLVWIL 177 >UniRef50_A6CVT0 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CVT0_9VIBR Length = 267 Score = 106 bits (265), Expect = 7e-22, Method: Composition-based stats. Identities = 34/249 (13%), Positives = 63/249 (25%), Gaps = 22/249 (8%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + ++ ++R L ++D V L+ L L+ + + T W Sbjct: 1 MNYHRRHDLVINLDNRMLT-KTSSDKVVTLSPSECLILKHLMNNGSQTLGRDYLLTHCWP 59 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI---NSS 117 G V ++L + IR V + TV + G+ + V+ S Sbjct: 60 --GRVVTNSSLNVAVKNIRNALLEVESRCK--VITVQKEGYCLVVPEQSDVQVVGFDGSR 115 Query: 118 TDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177 + + +K + L L A + + L Sbjct: 116 STVNADQPKLDAVNPPIETSDTSPSKYHSLAKLSQFSYQFAPLGAGIAVSILVIVLLFR- 174 Query: 178 QPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKT--------RILDSGINCKKHPW 229 + ING +D D + GI C Sbjct: 175 -----IGFFMERTAINGIDVYHDNAALDSQVMADLSSLASPGVEAIYMHRIGIECFDIQV 229 Query: 230 LYFPLAKSS 238 + Sbjct: 230 VLLDSNGWQ 238 >UniRef50_Q1IHU2 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IHU2_ACIBL Length = 323 Score = 106 bits (264), Expect = 8e-22, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 55/169 (32%), Gaps = 2/169 (1%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 + + L + L+LLL+ VV +++ ++W + ++L I+ +R Sbjct: 64 LRKNGAKLKLQEQPFQVLALLLDRAGQVVTREEIQQKLWPADTFVDFDHSLNTAINKLRD 123 Query: 81 GFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIG 140 I T+PRRG++ + + S A + + Sbjct: 124 VLGDTASNPR-FIETLPRRGYRFIAPVEWNEPSVIPSGAAPSATESKDPSRQTEPSIATI 182 Query: 141 GAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTV 189 + + L + + A LW ++ +D+ V Sbjct: 183 AEPELPQADHRITR-LLFGGLQLMYLIFYACGLWRLDEIGDIAEDHFHV 230 >UniRef50_B7VRN4 Putative uncharacterized protein n=2 Tax=Vibrio splendidus RepID=B7VRN4_VIBSL Length = 265 Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 39/263 (14%), Positives = 88/263 (33%), Gaps = 19/263 (7%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++ P R+ ++ N + L + + L L + V++ W Sbjct: 4 MTKKSSNIWILNPTLRRQLTNKNDGTSKKLHSTDCKILETLCKHKGRTVSKSALTNAAWP 63 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 G V +L Q+I+ +R G ++I TVP+ G+ + D+ I ++ + Sbjct: 64 --GRVVSKASLTQSIAHLRIALGDNG-REQNIIKTVPKHGYSLVEDLVEIEIPIINTQNN 120 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 + + P + + + + + ++L + Y+ + + Sbjct: 121 QSTDGPTTTQELLKIEVKEQVFFLKHFQNFTLLVLSCLLLLSISWLTQLIYYNSTTERIE 180 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240 +DY G + T + D +K LY +P Sbjct: 181 WGQRDYL------GVTYFFTNNQNG----EDHFKAFKGKYT---NNLRMLYLS---DNPE 224 Query: 241 MIVMACNKNYNQHEVANCLTLSY 263 ++C N+ + N + +S+ Sbjct: 225 TFYISCTYQLNRSHMRNTMNMSF 247 >UniRef50_B2Q575 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC 25827 RepID=B2Q575_PROST Length = 329 Score = 105 bits (262), Expect = 1e-21, Method: Composition-based stats. Identities = 48/323 (14%), Positives = 101/323 (31%), Gaps = 67/323 (20%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCL--SLLLEAFPDVVAQQDFFTRVW 59 ++IN+ F + + D V L+ PASR L ++L + +++ +VW Sbjct: 6 DYLINNKFIFETGKNFIFIKNEVDKFVELSKPASRLLNEIIILNQKSKIATREELLIKVW 65 Query: 60 EEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI------------ 107 EE G+ N L IS IR+ F +G S I TVP++GF+ D Sbjct: 66 EEYGLVGSNNNLNTYISEIRKKFELIGIDPKS-IVTVPKKGFRFDCDALETITDENDTPY 124 Query: 108 ----------------------------NIQNHVINSSTDAHTHNAPPAIKVNAGYKESI 139 + + H + I+ + Sbjct: 125 LPEEEIVVLNSSDVTLGLDDYEHSVTHSSQYSEKNAEEATTHFVDQKSIIEEHLHQPRQD 184 Query: 140 GGAKNFNNK--------------ILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKD 185 ++ K+ +++ + ++ N+ Sbjct: 185 NSISELSSTVQEEPQLLKIQNKGKFKNNPILFALIAMSLFLFIFVFYYTTNSNASMEVNS 244 Query: 186 YKTVAEINGCHFNVTEDTIDG--LKEFDKYKTRILDSGINCKKHPWLYF-----PLAKSS 238 Y TV+E + C + + I+ D ++ +NC++ + + Sbjct: 245 YMTVSERDKCLIQIPINLIESSTKDSIDFVNKKLDKYNVNCQEPKRVILLSEPNSIQSVD 304 Query: 239 PGMIVMACNKNYNQHEVANCLTL 261 + + C + +C+++ Sbjct: 305 KNISLSICKEK---KAQYDCVSI 324 >UniRef50_C3NSU2 Transcriptional activator of cad operon n=39 Tax=Vibrio RepID=C3NSU2_VIBCJ Length = 519 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 11/152 (7%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + IND + + KL D V L L E +V +++ VW+ Sbjct: 6 FQINDWV-LCIDENKLYR---QDREVSAEPRLINLLHFLAEHAGEVFGREELIQHVWD-- 59 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQN-----HVINSS 117 G V + Q+I +R+ R + S + TVP+RG+K+ ++ + S Sbjct: 60 GAIVTDQVVTQSIFELRKLLRDGREENLSYVVTVPKRGYKLVANVQRLDGNPYVSRQEES 119 Query: 118 TDAHTHNAPPAIKVNAGYKESIGGAKNFNNKI 149 T + A V E + A + Sbjct: 120 TASDVCLADDIDDVEDAVPEIVFPAGPLTRAV 151 >UniRef50_Q1IIZ5 Transcriptional regulatory protein-like n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IIZ5_ACIBL Length = 717 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 11/170 (6%) Query: 1 MY--WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRV 58 M + I D ++ V + + L + L L +V++++ V Sbjct: 1 MKGSFHIADW----EVEPQINQVRRQNHSFHLEPKVMQVLVELAAHSDEVLSKEHLIHAV 56 Query: 59 WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118 W V + L + IS IRR +I T+P+ G+++ + + Sbjct: 57 W--SDTFVSDDVLTRCISEIRRVLDDDARAPK-IIQTIPKSGYRLIAPVVFDKAAPPKNG 113 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY 168 ++ A + A+ + I + ++ A V A Sbjct: 114 SSNGSTATVEAATVETPP--LKTAETPRKNLAPWIVAVGVLAIAVVYFAI 161 >UniRef50_A4YSP3 Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YSP3_BRASO Length = 1015 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 5/116 (4%) Query: 7 DNIEFWP--EHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64 F P ++ + + ++L L L+E ++V +++ VW + Sbjct: 4 KTFVFGPFQLDQQNALLRRSGERILLAPKPFGVLVHLVERAGELVTKEELLNAVW--SDV 61 Query: 65 RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 V ++L I+ +R + I TVPRRG++ + I +H+ + + D+ Sbjct: 62 HVSESSLSVTINALRTALDDNKQSPR-YIETVPRRGYRFIAAVEIAHHLADPARDS 116 >UniRef50_D2A9T6 Transcriptional regulator, CadC n=3 Tax=Shigella flexneri RepID=D2A9T6_SHIF2 Length = 254 Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 51/264 (19%), Positives = 95/264 (35%), Gaps = 31/264 (11%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 +IIND I F P L +V+ D + A L++LLE+ V + V E Sbjct: 7 FIINDAIIFDPNKCSLSNVNTQDE-INFPATAGCILAVLLESNGGAVDRNSIIDSVLERF 65 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 + NTL Q IS++R+ F+ +G ++I T+P+ GF I +I I Sbjct: 66 SFDLSNNTLNQYISLLRKSFKNIG-VEENVILTIPKVGFYISENITISK------QSYDD 118 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 + + K SI + + ++ + + ++ + Sbjct: 119 SHLQEDVVEKVERKRSIPLFRILISLVVVIVIIEMFAVAF---------------KDTYS 163 Query: 183 FKDYKTV--AEINGCHFNVTEDTIDGLKEFDKYKTR-ILDSGINCKKHPWLYFPLAKSSP 239 DY V +I+ C ++E+ + + + I + C + + Sbjct: 164 ITDYPLVKSGKIDTCDLYLSENLNEIGIAKSQIEAAEISKKHLPCVPGANFIYDVNSMHY 223 Query: 240 GM-----IVMACNKNYNQHEVANC 258 + + C K+ N A C Sbjct: 224 LLGEGQRYLSRCIKSSNDETYAIC 247 >UniRef50_Q1ITK1 Lysine decarboxylase transcriptional regulator, CadC n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ITK1_ACIBL Length = 724 Score = 104 bits (260), Expect = 2e-21, Method: Composition-based stats. Identities = 28/180 (15%), Positives = 66/180 (36%), Gaps = 10/180 (5%) Query: 9 IEFWP--EHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + F P +R+ ++ + + LS+LLE+ ++V ++D TR+W + Sbjct: 11 VRFGPYCANRQTGELYKFGTRLKIQDRPFEILSILLESPGELVTREDLRTRLWPDGTFVD 70 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ-------NHVINSSTD 119 N + + +R D I TV RG++ + + + + Sbjct: 71 FDNNISTAVHKLRSVLSDSADAPR-YIETVGGRGYRFIGTVESDVPADSELAASVQAPAN 129 Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179 ++ A V+ K+ + + + + L++ + ++G +A P Sbjct: 130 KPETDSTSARVVSVIVKKPVALTTAPASVETRSRRWWLLIPALVLLGLIAAAAWIYFTPP 189 >UniRef50_B2JV11 Transcriptional regulator, winged helix family n=2 Tax=Burkholderia RepID=B2JV11_BURP8 Length = 966 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 10/153 (6%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M I IE +HR V V + + A L+LL+ A D+V++ + VW Sbjct: 38 MTTIRIGQIEVSLDHR---DVRLDGRKVPIGSRAFDILALLIAARGDLVSKDEIMRAVWP 94 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 V N L +IS +RR F IATVP RG+++ + H + DA Sbjct: 95 T--TVVEKNNLQVHISALRRAFGD----ERERIATVPGRGYRLIMQAELGAHAAPT-RDA 147 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHI 153 + + + A + + + ++ + I Sbjct: 148 ASEREATGMSLPAVSEAARPARRPLPARVPELI 180 >UniRef50_A4CYI6 Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 7805 RepID=A4CYI6_SYNPV Length = 209 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 30/211 (14%), Positives = 71/211 (33%), Gaps = 15/211 (7%) Query: 10 EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69 F P+ ++ L+ ++ L L++ ++V+++ W G V N Sbjct: 10 IFDPQKAT---YSTSEKTSRLSKSETKILQYLIDNCGEIVSRETLLQIGWP--GKFVVPN 64 Query: 70 TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST---DAHTHNAP 126 +L +I +R+ F ++I T+ +GF I +D I++ + + D + + Sbjct: 65 SLNVSIGNLRKAFGQ----DRAIIITIKDKGFTIKDDNFIRHPIEPEAIRECDPESDDVQ 120 Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDY 186 + + + I + +++ + G W + D Sbjct: 121 YSASEEEEASDIEQEISPRQSLPTWKIVCYSLLILVILFGVALGLGSWKSPPCVTINSDL 180 Query: 187 KTVAEINGCHFNVTEDTIDGLKEFDKYKTRI 217 +I + + L D T + Sbjct: 181 TICGDI---KYLNINKLTENLPRNDATYTHV 208 >UniRef50_UPI000197C3BF transcriptional regulator, CadC n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C3BF Length = 261 Score = 104 bits (258), Expect = 4e-21, Method: Composition-based stats. Identities = 41/253 (16%), Positives = 95/253 (37%), Gaps = 11/253 (4%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +I+N+ I++ + ++ V + LT + +L++ + +++ ++ Sbjct: 1 MIYILNNIIKYNSDLGEIFRVDTELSVMKLTPVLNYIFIILIQNNKTTITREEILKKILN 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 + ++V NTL Q IS +R+ + I ++ ++G I ++I I+ + + Sbjct: 61 KYDLKVSINTLNQYISTLRKVLHQQ-LLVENAILSISKKGLVISSEIQIEESIAKFNNKI 119 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 PP N K + KN K I S ++L + + + Sbjct: 120 EKSLVPPPTSSNKSNKSLLLSDKNHIIKKTLLIISVFLLLVIIYLINQIHAIKFPYASIQ 179 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAK---- 236 + ++ I C +D + D + +D + C+ Y+ Sbjct: 180 SY-----KISTIGDCPVYGFKDNYEK-NMSDTISKQAIDFNLTCEDSDVFYYYNNIQNLG 233 Query: 237 SSPGMIVMACNKN 249 + +++ C KN Sbjct: 234 KNKHSLLVKCKKN 246 >UniRef50_Q8D287 YqeI protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D287_WIGBR Length = 267 Score = 104 bits (258), Expect = 4e-21, Method: Composition-based stats. Identities = 52/277 (18%), Positives = 106/277 (38%), Gaps = 26/277 (9%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLE--AFPDVVAQQDFFTRV 58 M +IIN + F L + ++ L+ A R L L++ ++++ F + Sbjct: 1 MKYIINSLVIFDTIEYNLSLFKKKNKHIKLSHSAGRVLEELIKFHKNSSPISREYLFKNI 60 Query: 59 WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118 W G++ L Q IS+IR+G + +G S+I T+P++G K+++ + I+ N++ Sbjct: 61 WIIHGLQPSNGNLNQQISLIRKGLKHLGLN-SSVIVTIPKKGLKLNDKLKIKKLEKNNAK 119 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178 D + K K ++ N K ++ + ++ NN Sbjct: 120 DFIIDEISSSFK-----KRTLFNLSRINFKYKIIFSLISFIILFIFFSMFYSFKYKNNLN 174 Query: 179 PKPFFKDYKTVAEINGCHFN--VTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLA- 235 K +F D ++N C ++ + K ++ CKK+ + Sbjct: 175 QKLYFFD-----QVNSCKVYTFHPISILEKKEYDIKVAAAFEENDYKCKKNYIVIISKFV 229 Query: 236 ---------KSSPGMIVMACNKNYNQHEVANCLTLSY 263 + C ++ N+ + NCL L + Sbjct: 230 VSDDNLMKEDKKTNTFIEKCFRDKNERIL-NCLNLFF 265 >UniRef50_A4X1M5 Two component transcriptional regulator, winged helix family n=2 Tax=Salinispora RepID=A4X1M5_SALTO Length = 251 Score = 104 bits (258), Expect = 4e-21, Method: Composition-based stats. Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 5/110 (4%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + P ++ V L R L + V+++ + VW+ Sbjct: 146 GGLRMEPATYEVTLH---GRPVSLPLKEFRLLYFFMTHADRTVSREQLLSAVWDGSTGE- 201 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS 116 +NTL +I +R+ A G+ LI TV G++ ++ Sbjct: 202 SSNTLTVHIKRLRKRLEAEGE-PQPLIITVRGLGYRFTPPEQMEPSSTTP 250 >UniRef50_B9TBN5 Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TBN5_RICCO Length = 231 Score = 103 bits (257), Expect = 5e-21, Method: Composition-based stats. Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 2/130 (1%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 +N +L+ + +V L+ A R L+LL +A +V ++ F + W G Sbjct: 74 TLNGRWRLDELSNELVDPA-SGASVALSPIAVRLLTLLADAPNTIVGRRQLFDQGWRRYG 132 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 + V N+L Q I +R F +G S I TVPR G+ + + + ++ Sbjct: 133 IEVCENSLNQVICALRTAFARLGPEAPS-IRTVPRIGYSLVAQVAGRADRAPAAQVVAPD 191 Query: 124 NAPPAIKVNA 133 + Sbjct: 192 REASCETGDP 201 >UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 Tax=Bacteria RepID=Q3DDJ6_STRAG Length = 225 Score = 103 bits (257), Expect = 6e-21, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 8/102 (7%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 II N+E P + V + LT L L V +Q+ +VW E+ Sbjct: 129 IIIGNLEIDPTN---YWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKVWGEQ- 184 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 T T+ +I +R G LIATV G+++ Sbjct: 185 FLGETRTVDVHIGTLRTKLGEDGY----LIATVRGVGYRLEE 222 >UniRef50_B7RJ24 Putative regulatory protein, possibly two-component response regulator n=1 Tax=Roseobacter sp. GAI101 RepID=B7RJ24_9RHOB Length = 521 Score = 103 bits (257), Expect = 6e-21, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 45/157 (28%), Gaps = 7/157 (4%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + D+ + L+ + + A + L+LL+ +V + + VW+ Sbjct: 1 MRYRF-DHFTLDIDRGILL---EGGRDAPIEPRAFKLLALLVTHHDRIVTKDEIVENVWD 56 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 G V + I R+ G + T+ RG + + + Sbjct: 57 --GRIVSDAAIATVIKTTRKVLSDDG-VGQKYLRTIRGRGVRFVGTLMPSLAAEARKPET 113 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHL 157 P + + ++ I + Sbjct: 114 DQAQPAPVQTASRPTIAILPFQMVGYSETFSAIADAI 150 >UniRef50_C6LEL9 DNA-binding response regulator RegX3 n=3 Tax=Clostridiales RepID=C6LEL9_9FIRM Length = 234 Score = 103 bits (257), Expect = 6e-21, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 4/110 (3%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 W+I+ +I + K + D + L+ + L LE V+ ++ RVW+ Sbjct: 127 WLISGDIRLQEKEMK---AYLKDRELDLSLTEFKLLKYFLENKNQVLLKEQILARVWDSG 183 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNH 112 G V NTL NI +R I TV G+ + Q Sbjct: 184 GSFVEENTLMVNIRRLRTKVEEDASHPR-YIKTVHGMGYLWEDRPAEQVD 232 >UniRef50_A6CY17 DNA-binding transcriptional activator n=2 Tax=Vibrio shilonii AK1 RepID=A6CY17_9VIBR Length = 529 Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats. Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 8/146 (5%) Query: 6 NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65 D+ F+P K + ++V+ S+ L E V ++ + VW G Sbjct: 10 IDDWVFYPYEDKFVLH---GEDIVIDNRLSKLFHFLCENPDTVFSRDELINEVW--NGSI 64 Query: 66 VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---IQNHVINSSTDAHT 122 + + Q I +R+ + G+ + I TVP+RG+K+ + + +TD+ + Sbjct: 65 LTDQVITQAIFELRKILKQHGNHPYGYIVTVPKRGYKLDATVEKVIETPQPVIETTDSVS 124 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNK 148 +A I + + Sbjct: 125 EKIDVLRDESAPETTDIVLPEAGAST 150 >UniRef50_Q89V41 Bll1217 protein n=2 Tax=Bradyrhizobium japonicum RepID=Q89V41_BRAJA Length = 516 Score = 103 bits (256), Expect = 8e-21, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 13/181 (7%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + +N+ L + A + V L L L+ VV++ D +++W Sbjct: 1 MRFCFENNVL----DGDLRELTCAGVAVPLQPQVFDLLLYLVAQRARVVSKDDLISQIWS 56 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI------ 114 + V + L I+ R+ G T LI T+PR+GF+ ++ V Sbjct: 57 DR--IVSDSALNSRINAARKALGDDGATQR-LIKTIPRKGFRFIGEVREDVAVTLAPAEP 113 Query: 115 NSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLW 174 ++ + P + F + I + I + L F++ A ++ +++ Sbjct: 114 AAAPARTVADRPAIAVLAFENMSGDPEQDYFGDGISEDILTALSKQRWFMVIARNSSFIY 173 Query: 175 N 175 Sbjct: 174 K 174 >UniRef50_B1KAJ7 Transcriptional regulator, winged helix family n=3 Tax=Burkholderia cenocepacia RepID=B1KAJ7_BURCC Length = 493 Score = 103 bits (256), Expect = 8e-21, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 9/121 (7%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 +E R L + + + A L++LL A +V + + VW G V Sbjct: 4 GTLEVDLSTRSL---RRDGKAIHVGSRAFDVLAVLLSAAGRLVTKDELMAAVWP--GTVV 58 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126 N L +IS +R+ LI TVP RG+++ ++ ++ + Sbjct: 59 EENNLQVHISALRKLLG----PQRDLIVTVPGRGYQLTQKSAPSANLTPATPLRQGDSDI 114 Query: 127 P 127 P Sbjct: 115 P 115 >UniRef50_A5VGJ6 Transcriptional regulator, CadC n=1 Tax=Sphingomonas wittichii RW1 RepID=A5VGJ6_SPHWW Length = 382 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 7/127 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 PE R+L+ + V L L+LL+ +V + F + VW++ + V Sbjct: 9 GQFVLDPEDRRLLR---DGVPVELNARYLDALALLVRNAGSLVGKDRFLSEVWKD--VPV 63 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126 L Q I ++R+ H I TVP+ G++ +++ + + DA H P Sbjct: 64 TDEALTQCIRLLRQRLGDDASRPH-FIETVPKHGYRFIAEVDWRESSAPAE-DAAPHTLP 121 Query: 127 PAIKVNA 133 P+ +A Sbjct: 122 PSAAPSA 128 >UniRef50_A4SQG5 Transcriptional activator CadC n=2 Tax=Aeromonas RepID=A4SQG5_AERS4 Length = 511 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 55/200 (27%), Gaps = 25/200 (12%) Query: 6 NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65 + + L D V L L L V + VW+ G Sbjct: 8 IHDWTLRVDDNMLCR---PDREVYLEPRLVNLLRFLACHTGTVFGRDALIKEVWD--GAE 62 Query: 66 VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---------IQNHVINS 116 V + Q+I +R+ + I TVP+RG+K+ + + + Sbjct: 63 VTDQVVTQSIFELRKILKDGRFDATDYIVTVPKRGYKLVASVRPLQVVSLLMADEQPVPA 122 Query: 117 STDAHTHNAPPAIKVNAGYKESIGGAKNFN-----------NKILKHIKSHLIMLSAFVI 165 + +PPA + + + + S I ++ ++ Sbjct: 123 VNPTLSDLSPPATADDDDALPNAAPFPAGPLTRAISAHAKDARSRWKMVSFDIFVAVILV 182 Query: 166 GAYSAYWLWNNNQPKPFFKD 185 S + + D Sbjct: 183 AIVSMLSYQHASPQVHTMLD 202 >UniRef50_C9NXT9 Cholera toxin transcriptional activator n=2 Tax=Vibrio RepID=C9NXT9_9VIBR Length = 229 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 76/219 (34%), Gaps = 8/219 (3%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 +IN++ E + S +++ + L+ ++E + + + + VW + G Sbjct: 3 LINESHILDVEQGYIHS-QGSNVRHPIGINEIALLNYMIERTGETLTKHELMHEVWLKRG 61 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN-IQNHVINSSTDAHT 122 + V +++L IS RR +I TV G++ ++ Q +A Sbjct: 62 IVVESSSLLHCISNCRRALEDRA---GEIIRTVRGTGYEFVGRVDAYQPANEVEQVEAVV 118 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 + + ++++ + ++++ I S+ L + + Sbjct: 119 PEVVEIPVPQEPKETLRSRLVKYRSQLVATGLFVIGAVASYSIIENSSSPLAYASFEQQE 178 Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221 F E NG + T L +F + + G Sbjct: 179 FASCWFTPENNGAKVHYQNST---LYDFGELTLLVDGQG 214 >UniRef50_B2JV05 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia phymatum STM815 RepID=B2JV05_BURP8 Length = 658 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 8/121 (6%) Query: 9 IEFWPEHRKLISVHN--ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 I P L V + A L LL+EA +V+++ R+W E V Sbjct: 2 IRIGPLDIDLACREARVDGKPVRIGNRAFDMLELLIEAQGGLVSKEAILERIWPES--VV 59 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126 N L ++S +R+ + LI T+P RG+++ I H +++ A Sbjct: 60 GDNNLQVHMSALRKLLGD----SRDLIKTIPGRGYRLVRGAAIVRHADTAASYVERQTAA 115 Query: 127 P 127 P Sbjct: 116 P 116 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 6/103 (5%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 I +I R V AD + L R L L++ V +++ VW Sbjct: 132 IEAGDITMD---RVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWG-SD 187 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 + V T+ ++ +R+ I TV G+ + Sbjct: 188 VYVEARTVDVHVGRLRKALN--NKEERDPIRTVRSAGYAFDVN 228 >UniRef50_C9Y6H6 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y6H6_9BURK Length = 526 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 69/184 (37%), Gaps = 19/184 (10%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 N R+L+ V++ A L +L++ ++V ++ F VW G+ V Sbjct: 18 GNFVLQRHERRLLC---DGQTVMVGARAFDVLCVLVDHAGELVTKKKLFDLVWP--GLVV 72 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126 N L ++S +RR A IATVP RG++ + + ++ + Sbjct: 73 EENNLQVHVSSLRRILGA------DAIATVPGRGYRFTLRLAAVPSAVETAQASKGKGRA 126 Query: 127 PAIKVNAGYKESI--------GGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178 + + + F++ + + I SHL ++ + ++ + + N + Sbjct: 127 SDQQAYRRTIAVLPFVNLNADPEQEYFSDGLAEDIISHLTKSPWLLVVSRNSSFAYRNTK 186 Query: 179 PKPF 182 Sbjct: 187 ESNQ 190 >UniRef50_A4FNN5 Response regulator, two-component system n=12 Tax=Actinomycetales RepID=A4FNN5_SACEN Length = 237 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 2/89 (2%) Query: 19 ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78 V D + L L +L++ VV +++ VW E + TL +IS + Sbjct: 150 RRVLVDDHEIQLANKEFELLRVLMQHAGQVVTREEILEEVWPEPSRKGSK-TLDMHISWL 208 Query: 79 RRGFRA-VGDTTHSLIATVPRRGFKIHND 106 RR G IATV GF+ + D Sbjct: 209 RRKLGDSNGRFDDQRIATVRGVGFRFNAD 237 >UniRef50_Q67JF4 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67JF4_SYMTH Length = 236 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 3/91 (3%) Query: 15 HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74 R V D V L+ R L L ++V ++ +W++ V NTL N Sbjct: 145 DRATNRVSCGDRTVELSPKEFRLLWCLARRAGEIVGRETLLEELWDDTE-FVDDNTLTVN 203 Query: 75 ISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 ++ +RR +G T +I T +G++++ Sbjct: 204 VTRVRRRLEELGLTG--VIETKRGQGYRLNA 232 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 5/99 (5%) Query: 6 NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65 + ++ P R++ S V LT L LL V ++ RVW E+ + Sbjct: 140 HGDLTIDPLSREVTSR---GQPVHLTAKEFDLLHLLAANPGRVFSRDYLLHRVWGEDYVG 196 Query: 66 VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104 V T+ +I +R+ G I T+ G+K Sbjct: 197 V-DRTVDTHILRLRKKLGGPGSPAER-IVTLWGVGYKYE 233 >UniRef50_Q2SHD7 Probable transcriptional regulator n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SHD7_HAHCH Length = 487 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 47/151 (31%), Gaps = 5/151 (3%) Query: 6 NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65 E +L L+ + L L E V+++ +VW E Sbjct: 11 IGEWRINVETNRLYREAAEHQ---LSDKVCKVLLALAENPGRTVSRETLIQKVW-NENEY 66 Query: 66 VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125 V L I +R+ F + I T+P++G+++ ++++ + Sbjct: 67 VGEQALNTAIWQLRKAFNDSSEAPE-YIETIPKKGYRLLKEVSVIPYAPRQDITPPPSAE 125 Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKSH 156 P + A + + + + Sbjct: 126 PAPAPTPEPETSTPDNAPEPPPEPITEVTPY 156 >UniRef50_Q89XL4 Transcriptional regulator n=1 Tax=Bradyrhizobium japonicum RepID=Q89XL4_BRAJA Length = 989 Score = 102 bits (254), Expect = 1e-20, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 P R+ V + L+ A L L+ +VV++ + W G V Sbjct: 53 GPFRLDPSQRR---VERDGSPLQLSGRAFDILLALVRQAGNVVSKTELMATTWP--GAAV 107 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126 N+L +I+ +R+ G+ ++TV +G+ ++ + T+ + Sbjct: 108 EENSLRVHIAALRKALGD-GNDGVRYLSTVSGQGYCFVAAVSRPEQRQPAPTNPTYVHNL 166 Query: 127 PA 128 PA Sbjct: 167 PA 168 >UniRef50_A1S359 Putative transcriptional regulator, CadC n=1 Tax=Shewanella amazonensis SB2B RepID=A1S359_SHEAM Length = 729 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 3/136 (2%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 + + L + L LLE V++ + VW G +V N + + I+ +R Sbjct: 21 IAKNGSDTKLELRVMQVLVCLLERAGRPVSRDELIREVW--RGGQVSDNAINRIIAQLRS 78 Query: 81 GFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIG 140 + +I TVP+ G+ + ++ + + +D + P + Sbjct: 79 ALGD-DARSQQVIQTVPKVGYLLIAEVEPLEGQVITPSDLTHSSEVPNAAAPVAPIDIED 137 Query: 141 GAKNFNNKILKHIKSH 156 + ++ + IK Sbjct: 138 NQQRSSSTMSPDIKPV 153 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 2/79 (2%) Query: 25 DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84 D + LT L LL+ ++ + R+W T T+ +I +R + Sbjct: 154 DKTIALTPKEYELLKLLVTNPGRAFSRDELLERIWG-YEYYGDTRTVDVHIRHLRAKLKD 212 Query: 85 VGDTTHSLIATVPRRGFKI 103 T I TV G++ Sbjct: 213 -DPTVSDAIETVRGVGYRF 230 >UniRef50_A6D0K2 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1 RepID=A6D0K2_9VIBR Length = 233 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 37/211 (17%), Positives = 73/211 (34%), Gaps = 12/211 (5%) Query: 8 NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 NI P + L + L + L L A + +Q W G V Sbjct: 6 NITLNPNNGHLA--EDGLTIAKLNSSERLILEALCNAQGHPLTKQQLLDVGWP--GKIVV 61 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN------SSTDAH 121 N+L I IR VG + TVP GF++ ++ + + + SS A+ Sbjct: 62 ANSLNVAIRNIRTALDKVGLVM--CLETVPTIGFRLDPNVILITNDVPFVSVNVSSASAN 119 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 ++A + +E + + +++ + + A ++ + KP Sbjct: 120 DNDASSSELAAQPVEECPSPNDTVATPTRFELVKKVPLMALYAALLFCALVIFYVSSIKP 179 Query: 182 FFKDYKTVAEINGCHFNVTEDTIDGLKEFDK 212 YK F++ ++T+ L + + Sbjct: 180 SMHTYKRGNTTLVGSFSLPDNTVHALSKETE 210 >UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=Q1AZL3_RUBXD Length = 227 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 6/100 (6%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 +++ R+ V A V L++ L L+ V+++Q + VW + Sbjct: 130 GDLKLDLLSRR---VWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVW-DYAFDP 185 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 +N + + +RR G+ SLI TV G++ Sbjct: 186 GSNVVDVYVRYLRRKLDRPGE--PSLITTVRGAGYRFDPP 223 >UniRef50_B5R4U2 Possible transmembrane regulator n=37 Tax=Enterobacteriaceae RepID=B5R4U2_SALEP Length = 254 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 88/262 (33%), Gaps = 24/262 (9%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++++ + F L + + + ++ + L + ++D VWE Sbjct: 16 FLLDKRVVFDSTKMTL---SHGNEIIRISEAETHLLLAFW---HGLYKKEDIIHLVWENR 69 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 G V ++ Y+ I+ +R F ++G I T PR G + I + Sbjct: 70 GGCVSESSYYKLINQMRNDFSSIGLQPSD-IVTRPRVGVSLSVAIEPIKKIT-------- 120 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 ++KV+ + + KI +H ++ + + Y + ++ Sbjct: 121 -----SLKVSDENVKGPSTREKIFYKIKRHSVFVVLTGAILLALLYGVFTIYKAPVRNSP 175 Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMI 242 + + E N T++ L E + L I + LY P M Sbjct: 176 DSFFTYLGEYNDYAIYKTKEDKVTLSEV-VFAFNSLKIKIYRQNGRHLY---YIREPNMN 231 Query: 243 VMACNKNYNQHEVANCLTLSYR 264 + N + V C+T+ R Sbjct: 232 IFLQCLNPVEMAVPKCITVKER 253 >UniRef50_C6IXU0 Transcriptional regulator domain-containing protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IXU0_9BACL Length = 265 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 2/89 (2%) Query: 15 HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74 RK ++V+ + + LT L LLE V+++++ + VW +N + + Sbjct: 177 DRKKMTVYRGGIKIELTKTEFELLIKLLEHEGTVLSREELLSEVWGTT-FLGGSNVVDVH 235 Query: 75 ISIIRRGFRAVGDTTHSLIATVPRRGFKI 103 I +R+ + I TV G+++ Sbjct: 236 IKSLRKKLGDNASRP-TYITTVRGVGYRL 263 >UniRef50_Q12K29 Transcriptional regulatory protein-like protein n=2 Tax=Alteromonadales RepID=Q12K29_SHEDO Length = 604 Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 72/197 (36%), Gaps = 26/197 (13%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + N+ EF E L + L + + ++ L+LLLE V+++ D + VW+ Sbjct: 1 MNYRFNE-FEFDSESLLLT---KSGLTLAIRHNEAKVLALLLERADKVLSKDDILSHVWQ 56 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 V ++QNIS +R + I T P+RG++ Q + + D+ Sbjct: 57 NRP--VSEQAVFQNISHLRSILG------NQAIKTFPKRGYQW------QLETVRVTPDS 102 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 + P + +NK + + L + + A+ W Sbjct: 103 QSSTIPVRTQYQPLP-------VPSHNKRPRWLYFALASMLMVSVLAFYLPWPDQQENTH 155 Query: 181 PFFK-DYKTVAEINGCH 196 Y + ++NG Sbjct: 156 SRISIAYIPMTQLNGTE 172 >UniRef50_Q05943 Transcriptional regulatory protein glnR n=102 Tax=Bacteria RepID=GLNR_STRCO Length = 267 Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 37/140 (26%), Gaps = 7/140 (5%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 I N ++ S + LT L L + V + VW Sbjct: 127 IRNGDLSVDEAT---YSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWG-YD 182 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 T T+ ++ +R G SLI TV G++ + + ++ Sbjct: 183 YFGGTRTVDVHVRRLRAKL---GPEHESLIGTVRNVGYRFVTPEKPEKGEKSDKSEKAER 239 Query: 124 NAPPAIKVNAGYKESIGGAK 143 G + Sbjct: 240 AEKAERAETPGKAAAETNEA 259 >UniRef50_Q1ZPR1 Transcriptional activator CadC n=1 Tax=Photobacterium angustum S14 RepID=Q1ZPR1_PHOAS Length = 481 Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats. Identities = 43/258 (16%), Positives = 80/258 (31%), Gaps = 31/258 (12%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 + IND + E+ S+ + +L ++ LS L + V + + VW+ Sbjct: 5 NFKINDCLLITTEN----SLKKSGKTYILEPRITKLLSFLAQNQGIVFTRDELIDEVWD- 59 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---IQNHVINSST 118 G V + Q+I +R+ + + I T+P+RG+K+ D+ I + Sbjct: 60 -GAVVSDQVVTQSIFELRKILKKLD--EDHWIITIPKRGYKLDADVQQIYIDPNTGFKLE 116 Query: 119 DAHTHNAPPAIKVN--------------AGYKESIGGAKNFNNKILKHIKSHLIMLSAFV 164 + H+ N N + I A N + L + Sbjct: 117 EFHSSNEHTNDNSNLGTAFPAGPMTRAFSKPDNDIPPASVSNKISNLMLNHWLFDVGILS 176 Query: 165 IGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFD----KYKTRILDS 220 + + + N KD K +IN + + K + Y Sbjct: 177 MLVLTLVFASWANNDNAPIKDLKNPRQINIEITSSSNQLYSIAKMIESTLFSYTDYTSSL 236 Query: 221 GINCKKHPW--LYFPLAK 236 N + LY Sbjct: 237 HPNSEAGKTLSLYISDNN 254 >UniRef50_A6F962 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36 RepID=A6F962_9GAMM Length = 305 Score = 101 bits (252), Expect = 2e-20, Method: Composition-based stats. Identities = 45/274 (16%), Positives = 96/274 (35%), Gaps = 27/274 (9%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 +I PE R + + ++ + V + R L LL+ +++ + F W +G V Sbjct: 13 QHISIDPEMRAITCLLSS-ITVNMRPLPFRVLMHLLKNQDKCISRDELFEECW--QGAVV 69 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTD------- 119 +L IS IR + + ++ I T+ ++G+ + +N + N + D Sbjct: 70 SEQSLTNTISYIRNKIKKL-ESNELKIKTISKKGYSLVITLNHELPENNHNGDLKDRAEE 128 Query: 120 ----------AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSH-LIMLSAFVIGAY 168 ++P + G+ + + N +K + + ++ + Sbjct: 129 SGETQELDKVIELDDSPGDSDKDNGFNRILSENEKINLPAVKGVYIRGMWFFVNLMLIST 188 Query: 169 SAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHP 228 + + NN+ F D K + +V DGL +++ + S +N Sbjct: 189 LIFLIAKNNKGNASFMDEKNYQRYELGNIDVYISDPDGLLVEGEFRKELDGSNLNSCDIN 248 Query: 229 WLYFP-----LAKSSPGMIVMACNKNYNQHEVAN 257 +Y K + M KN + N Sbjct: 249 KVYIRVYSSPYNKDNIAMSAFIITKNSESQNIIN 282 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 6/96 (6%) Query: 8 NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 ++ P R+ V + V LT L L+E V+ +Q VW Sbjct: 139 DLILDPVTRE---VTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWG-CDFTGD 194 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103 +N + I +R G LI TV G+ + Sbjct: 195 SNIIEVYIRYLRLKIE--GPGEKRLIQTVRGVGYVL 228 >UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193 Tax=cellular organisms RepID=PHOB_RHIME Length = 227 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 +IE R+ VH V L R L L+ + V ++ VW + V Sbjct: 135 GDIELD---RETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVWG-HDIYV 190 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104 T+ ++ +R+ +I TV G+ + Sbjct: 191 DERTVDVHVGRLRKALN--FSNMPDVIRTVRGAGYSLE 226 >UniRef50_Q1AYG8 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AYG8_RUBXD Length = 229 Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 5/98 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 ++E PE I V V+L+ + L L + V + +VW E + Sbjct: 133 GDLEIDPEQ---IRVTKGGREVMLSPREFKLLYTLARSPGRVFPRGTLLRQVWGE-DEYI 188 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104 T+ + +R + LI TV G+++ Sbjct: 189 DERTVNVYVQRLRNKLGD-DPSDPKLIETVRGFGYRLV 225 >UniRef50_D1TLX7 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. CCGE1002 RepID=D1TLX7_9BURK Length = 476 Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 12/121 (9%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M IE R V ++ L + A L+ L A VV++ + VW Sbjct: 1 MK---IGRIELDMNAR---CVRRDGQDLRLGSRAFDLLATLASANGRVVSRSELMQTVWP 54 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 G V + NIS +R+ LI TV RRG+++ +IQ + +++ Sbjct: 55 --GTVVEDCNIDVNISALRKALGD----DRDLIVTVARRGYQLAPSRHIQPKLRTAASPR 108 Query: 121 H 121 Sbjct: 109 P 109 >UniRef50_C2HYC0 Transcriptional activator ToxR n=1 Tax=Vibrio cholerae bv. albensis VL426 RepID=C2HYC0_VIBCH Length = 275 Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 82/209 (39%), Gaps = 7/209 (3%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 +I+ +++F L + L+ +R L LL++ VV++ W Sbjct: 10 YILEGSVKFSVIDSTLTYGNKNH---HLSYTETRILELLIKNSGSVVSKIQLIEYSW--T 64 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 G V +L ++IS IR+ FR + I T+PR G+++ N+ ++ +++ Sbjct: 65 GKVVAETSLAKSISNIRKVFREC-EFHDDAIQTIPRLGYRLSLRSNVYEEKMDETSNLIF 123 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 AI + + I A ++ K I S+L+ Y +++ Sbjct: 124 LEETKAISDSLAPRAMIKYADSYLGINFKKIISYLVCFILLSASVTFLYETIHSSHSNFI 183 Query: 183 FKDYKTVA-EINGCHFNVTEDTIDGLKEF 210 DY+ ++ I + V ++ + Sbjct: 184 DADYEKISIHIENKKYIVIKNKNSNIPSR 212 >UniRef50_Q1ZVU4 Putative uncharacterized protein n=1 Tax=Photobacterium angustum S14 RepID=Q1ZVU4_PHOAS Length = 262 Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats. Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 16/243 (6%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 + IN ++F + L ++ +LT SR L+LLLE ++V++++ T WE Sbjct: 7 NYQINH-VKFDSKKGLL---SDSCQQHLLTYTESRLLTLLLERQNEIVSKEELKTFAWE- 61 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 V ++L ++I+ IR+ +IATVPR G+++ + + Sbjct: 62 -HTVVTDSSLTKSIAKIRQSLSTYFPNDE-IIATVPRVGYRLDLEKTSFSEDKLEHEVET 119 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 + P V ++ F + L++ A + + + N + Sbjct: 120 STVLPSENNVGYQAQKL-----PFKKSFFIIKRGLLVLSIALLAYSGFNLFRKLPNDYRK 174 Query: 182 FFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGM 241 F + + +I F +K K + + NC Sbjct: 175 FLNNDYSAIDITNNGFTHRIIKPKSFIIPEKIKAILAEKKCNC----IFMIDKVGDHYNF 230 Query: 242 IVM 244 Sbjct: 231 SYF 233 >UniRef50_C5EUU3 Two-component response regulator n=5 Tax=Bacteria RepID=C5EUU3_9FIRM Length = 223 Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++ D I ++ + V L+ P + L +LL+ V ++ +VW+ Sbjct: 127 YLTCDGITLDTSGMRVFC---GNEEVTLSQPEYQVLLVLLQNKGRTVPREMLLEQVWDSN 183 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI 107 G V NTL I +R S + T+ G+++ + + Sbjct: 184 GNYVNNNTLTVTIKRLRGKLHQ-----PSCLKTIRSFGYRMEDSV 223 >UniRef50_A8SVV6 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SVV6_9FIRM Length = 228 Score = 100 bits (250), Expect = 3e-20, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 1/88 (1%) Query: 19 ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78 + V+ +D + L+ R L LL++ V+ + ++W++ V NTL +I + Sbjct: 142 MQVYISDEPIKLSVTEYRILELLIKNKGRVLTRDMIIQKIWDDNENYVDENTLNVHIRRL 201 Query: 79 RRGFRAVGDTTHSLIATVPRRGFKIHND 106 R+ + TV G+ Sbjct: 202 RQKIEKDAGNPE-YVITVFGIGYTFGET 228 >UniRef50_A6UHF5 Transcriptional regulator domain protein n=13 Tax=Proteobacteria RepID=A6UHF5_SINMW Length = 531 Score = 100 bits (250), Expect = 4e-20, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 25/193 (12%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++ D + E R+L V + L L+ VV++ + VW Sbjct: 1 MQFMFADYV-LDRERRELTLR---GQVVSVGPQVFDLLLHLVGTRDRVVSKDELLQAVWG 56 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS--- 117 G V +T+ +I+ +R+ G L+ TV R+GF+ DI I + Sbjct: 57 --GRIVSESTITSHINAVRKAIGDTG-GEQRLVRTVARKGFRFVGDIRIADSAEARQPGG 113 Query: 118 ------TDAHTHNAPPAIKVNAGYKESIGG---------AKNFNNKILKHIKSHLIMLSA 162 T + PPA+ + ++ F + +++ I + L + Sbjct: 114 PGSAGHTSLGSKEPPPALALPDKPSITVLPFQNLSGDADQDYFADGVVEDIITALSRIRW 173 Query: 163 FVIGAYSAYWLWN 175 + A ++ + + Sbjct: 174 LFVIARNSSFTYK 186 >UniRef50_Q988M4 Mll6677 protein n=1 Tax=Mesorhizobium loti RepID=Q988M4_RHILO Length = 168 Score = 100 bits (250), Expect = 4e-20, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 3/119 (2%) Query: 19 ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78 + D V L + A L LLE ++V++Q+ RVW + + V L +IS + Sbjct: 41 FLLLEGDKPVPLGSRALGILIALLERPGELVSKQELMARVWPD--VFVVPTNLTVHISAL 98 Query: 79 RRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKE 137 RR R G + I +P RG++ ++ S ++ Sbjct: 99 RRVLRD-GRDGNRFIINIPGRGYQFVASVHTPLQRKASLETMRPIVPALEERLQIQAPS 156 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 100 bits (250), Expect = 4e-20, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 7/100 (7%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + + + V V LT L L E V ++ F R+W E G Sbjct: 136 GRLVIDVQAHE---VRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLFQRLWGEFG--- 189 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 +T+ +I +R I TV G++ + Sbjct: 190 DRHTVTVHIGRLREKIEE-DPANPRYIVTVWGVGYRFDGE 228 >UniRef50_B5CLM3 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CLM3_9FIRM Length = 226 Score = 100 bits (250), Expect = 4e-20, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 2/83 (2%) Query: 24 ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83 + + LT + L L++ V+ +++ VW +G V N++ + +R+ Sbjct: 146 GENEISLTAKEYQLLEYLMKNQGQVLTKENILEHVWGIDGQYVVDNSVSVLVGRLRKKIE 205 Query: 84 AVGDTTHSLIATVPRRGFKIHND 106 A G+ I V G+++ + Sbjct: 206 AAGERP--YIQNVFGLGYRMEEE 226 >UniRef50_C5B7S6 Transcriptional activator CadC n=2 Tax=Enterobacteriaceae RepID=C5B7S6_EDWI9 Length = 548 Score = 100 bits (250), Expect = 4e-20, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 4/130 (3%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 + +VL LS V+++ + VW+ V + + Q IS +R+ Sbjct: 20 ITREGRVLVLEPRLIDMLSYFAHHPDMVLSRDELIDNVWKRN--IVTNHVVTQCISELRK 77 Query: 81 GFRAVGDTTHSLIATVPRRGFKIHNDINI--QNHVINSSTDAHTHNAPPAIKVNAGYKES 138 + I TVP+RG+K+ + + + P S Sbjct: 78 YLKDGRPEAPEYIVTVPKRGYKLVESVIWCGEESLEQLVAAVLPAETPSFPAAAEAVTPS 137 Query: 139 IGGAKNFNNK 148 + F + Sbjct: 138 GSASPAFAAE 147 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 100 bits (250), Expect = 4e-20, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 9/108 (8%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + ++E P+ R+ A + LT L L V++++D +VW Sbjct: 130 MRFT---HVEIDPDARE---ARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWG 183 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108 + +S +RR A+ T +LI T G++ + Sbjct: 184 A-DFYGTDRVVDVYVSQVRRKIEAL--TGENLIRTARGVGYRFVDTPV 228 >UniRef50_C0CI50 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CI50_9FIRM Length = 224 Score = 100 bits (249), Expect = 5e-20, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 4/99 (4%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + + ++L ++ V LT R L L+ V+ ++ VW+ V Sbjct: 129 GDFVYDYAKKELTI---QNVPVKLTATELRLLEYFLKNRGQVLTREQILENVWDSYENFV 185 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 TL N+ +R I T+ G+K Sbjct: 186 DERTLNVNVRRLREKIEK-DPKNPRYIVTMFGIGYKWKE 223 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 100 bits (249), Expect = 5e-20, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 6/103 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + + P ++ +D+ V + R L L V + VW + V Sbjct: 136 EGLCLDPISHRVTI---SDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLDHVWGGN-VYV 191 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI 109 T+ +I +R+ G I TV G++ N + + Sbjct: 192 EERTVDVHIRRLRKALSLEG--HDRFIQTVRGAGYRFSNKVAL 232 >UniRef50_Q3KEV5 Putative transcriptional regulator n=2 Tax=Pseudomonas fluorescens RepID=Q3KEV5_PSEPF Length = 928 Score = 100 bits (249), Expect = 5e-20, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 6/118 (5%) Query: 10 EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69 P R V D + L A L +LL +VV++Q VW + V Sbjct: 15 RIHPGQR---LVLEGDQPLRLGRRAMDILLILLAHAGEVVSKQQLIAGVWPDS--VVEDI 69 Query: 70 TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPP 127 L +++ +R+ G I TV +RG+ + +Q+ +T + P Sbjct: 70 NLRVHMAALRKALGD-GQAGQRYIVTVAQRGYSFVAPVVLQSIEQRPTTANLGRHNLP 126 >UniRef50_C5AMC0 Transcriptional regulator, winged helix family protein n=1 Tax=Burkholderia glumae BGR1 RepID=C5AMC0_BURGB Length = 956 Score = 100 bits (249), Expect = 5e-20, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 9/122 (7%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 E R+L V L A L +L A +V + +W + V Sbjct: 15 GRFEIDLVGREL---RENGSAVRLGARAFAILEMLAAADGRLVTKDALLDAIWPD--TFV 69 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126 NTL ++S +RR I TVP RG+++ + + Sbjct: 70 EENTLQVHLSALRRALGD----QRDCIMTVPGRGYRLVRRAAAEPPRGAQPAARLPRHPD 125 Query: 127 PA 128 Sbjct: 126 VI 127 >UniRef50_Q2C5Y8 Putative uncharacterized protein n=2 Tax=Photobacterium RepID=Q2C5Y8_9GAMM Length = 292 Score = 100 bits (249), Expect = 5e-20, Method: Composition-based stats. Identities = 39/272 (14%), Positives = 81/272 (29%), Gaps = 15/272 (5%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + I ++ + R L H+ T S LLL VA++ ++ W + Sbjct: 10 YRI-GSVTYDSSTRTLT--HDNGQTEYFTPRVSDVFLLLLAHQGKCVAKEFLLSQCWGD- 65 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN----IQNHVINSST 118 V L IS +R+ F I TV + G+ + ++ + Sbjct: 66 -TIVSEQALTNVISKLRKVFAKHA-LEMITITTVSKSGYLLEVKMDDSCVVDEEKKQVKQ 123 Query: 119 DAHTHNAPPAIKVNAGYKESIGG-AKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177 P++ + K + K+ + IL +++ +I A+ Y++ + Sbjct: 124 QPERKTIKPSLLSDDIIKVNENDITKSVESNILCRKSVSYLLIILIIITAFLIYYINSVI 183 Query: 178 QPKPFFKD---YKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPL 234 P+F D Y I E + + K C + + +F Sbjct: 184 NTTPYFIDTNYYIHEINIGSNKVYFNEVDDYDVDKELFIKGITKSLSSVCHSNIYAHFYY 243 Query: 235 AKSSPGMIVMACNK-NYNQHEVANCLTLSYRE 265 + + ++ Sbjct: 244 NTRIANNSSIVVFIMPSDGRAFNFRMSKYTYG 275 >UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD Length = 231 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 6/104 (5%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 I R V + LT + L L + V++++ RVW + Sbjct: 128 IEAGPFRLDLNTRT---VTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVWGPDA 184 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI 107 + N + + +R+ S I TV G+ H D Sbjct: 185 DVIG-NAVENYVHFLRKKIDEPDL--PSYITTVRGVGYMFHPDP 225 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 100 bits (248), Expect = 7e-20, Method: Composition-based stats. Identities = 13/96 (13%), Positives = 35/96 (36%), Gaps = 6/96 (6%) Query: 9 IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68 + P ++++ + + + + L + V +++ VW + V Sbjct: 137 LSLDPTSHRVMT---GEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTN-VYVED 192 Query: 69 NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104 T+ +I +R+ G ++ TV G++ Sbjct: 193 RTVDVHIRRLRKALEPGG--HDRMVQTVRGTGYRFS 226 >UniRef50_Q3AVF0 Response regulator receiver domain protein (CheY-like) n=2 Tax=Synechococcus RepID=Q3AVF0_SYNS9 Length = 227 Score = 100 bits (248), Expect = 7e-20, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%) Query: 6 NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65 ND++ P R+ V + LTT L LL+ V+++ +VW++E Sbjct: 129 NDDLCLDPSTRE---VWRGGRALDLTTREFMLLLTLLQHQGRVLSRDQLLQQVWQDE-RA 184 Query: 66 VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 N + + +R+ A G+ L+ TV RG+ + Sbjct: 185 SSGNVVEVYVRYLRQKLEAEGE--GRLLHTVRGRGYCLGPS 223 >UniRef50_A8T8X6 Putative transcriptional regulator ToxR n=3 Tax=Vibrionales RepID=A8T8X6_9VIBR Length = 285 Score = 99.8 bits (247), Expect = 7e-20, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 75/213 (35%), Gaps = 21/213 (9%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + I NI P+H + + ++ + + +L E + +++ TR W Sbjct: 2 YKI-KNILIHPDHPLVTDLTTSEEK-RIGYHDHLVILMLCENAGKITTKEELLTRAWP-- 57 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND-----------INIQN 111 G V +L Q+IS IR G T L TV + G+K+ +D + ++ Sbjct: 58 GKHVSEGSLTQSISTIRNLIEDDGKTQKHL-KTVAKIGYKLESDAVSLQGKVDDGLEMET 116 Query: 112 HVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171 + + T K + + K ++H+ M + Sbjct: 117 IPLVDAPAPDTETLESIKIEEQCSKVANPKVTIPDQNHFKFNRNHIYMAIGCFFVVVAVI 176 Query: 172 WLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTI 204 + + Q +P + + +A++ +E+ Sbjct: 177 FPFYLTQREPDYSGWLHLAKM-----YSSENMT 204 >UniRef50_B6FMI5 Putative uncharacterized protein n=7 Tax=Clostridiales RepID=B6FMI5_9CLOT Length = 243 Score = 99.8 bits (247), Expect = 9e-20, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 4/100 (4%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + +P+ +++ + + LT + L L+ V+ +++ +W +G V Sbjct: 146 GELTLYPDRKQVFT---GKTEISLTAKEYQLLEYLMRNQGQVLTKENILETIWGVDGQFV 202 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 NT+ I+ +RR G+ I V G++I Sbjct: 203 VDNTVSVTINRLRRKIEPDGER-QGYIQNVFGLGYRIGEK 241 >UniRef50_Q182M4 Two-component response regulator n=14 Tax=Clostridiales RepID=Q182M4_CLOD6 Length = 242 Score = 99.8 bits (247), Expect = 9e-20, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 4/105 (3%) Query: 2 YWII---NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRV 58 +I+ +D ++ E++ +I + + ++L+ ++ L L+E + ++ + Sbjct: 131 NYILLVCDDLFFYYIENKLIIRTDDKEEEIILSKTETKLLKYLMENSMQTLTKEQLLESL 190 Query: 59 WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103 W+ G V NT+ NI +R+ + I TV G+ Sbjct: 191 WDSSGNFVDDNTIAVNIRRLRQKVEK-NPSEPKYIKTVRGVGYMW 234 >UniRef50_Q2T8V0 Transcriptional regulator, putative n=9 Tax=pseudomallei group RepID=Q2T8V0_BURTA Length = 255 Score = 99.8 bits (247), Expect = 9e-20, Method: Composition-based stats. Identities = 39/271 (14%), Positives = 78/271 (28%), Gaps = 25/271 (9%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 ++I D + F L + D LTT S L ++L+ + + +VW Sbjct: 3 KYLIEDLVTFDAHLMTLTHL---DQTTELTTNESELLQMVLD---GMATKAAVIQQVWGS 56 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 +G+ V ++ +Q + +R G + +LI T+PR+G K + + Sbjct: 57 KGLVVTDSSYHQLVRSVRSRLEEHGISG-ALIKTLPRQGLKFLGSAQALTDAPVPAAERG 115 Query: 122 THNAPPAIKVNA--GYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY--SAYWLWNNN 177 + A + + + + ++ + A + G W Sbjct: 116 LADLDEAADEASRGPLAQHEPPSAPPAGRARNWRRTLRFVERALLAGLVVWVGLVTWKMI 175 Query: 178 QPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLY-FPLAK 236 F I T + + G+ +Y Sbjct: 176 SINDRFPWLTGHFGI---------HTHAHVSPRSAGLKLLASIGVRPGPGERVYEISRNG 226 Query: 237 SSPGMIVMACNKNYNQHEVANCLTLSYREVN 267 + C C T S R++ Sbjct: 227 D---RWLAICAG-ARHSSDERCTTYSTRDLT 253 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 99.8 bits (247), Expect = 9e-20, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 5/102 (4%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 D + P R++ V LT L L+ A V ++ +VW Sbjct: 136 DELTVDPIGREITV---DGAPVRLTALEFDLLHALVRAPGRVFSRAQLLEQVWG-NDFYG 191 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108 + +I +R H LIATV G+K Sbjct: 192 DERVVDVHIRNLRAELGDDATDPH-LIATVRGVGYKFIGRPR 232 >UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q022A1_SOLUE Length = 605 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 3/103 (2%) Query: 28 VVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGD 87 V L A L +L+E +VVA+QD + VW + V + L NISI+RR Sbjct: 2 VALEPKAVEVLLILVEKRGEVVARQDLMSAVWPD--TFVEESNLSSNISILRRQLGTP-P 58 Query: 88 TTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIK 130 I T+P+RG++ +N + ++T + Sbjct: 59 DGGDYIQTIPKRGYRFVAAVNQAGSELEAATAEVSEIVSAEAT 101 >UniRef50_B6EJP4 Putative uncharacterized protein n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EJP4_ALISL Length = 302 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 92/260 (35%), Gaps = 31/260 (11%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M I N+ P R+L +NAD ++L +LLLE + + + + F WE Sbjct: 1 MQKITIVNLVLEPATRRLS--NNADDAIILRPLPYNVFTLLLEQKGNCIDRDELFDVCWE 58 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS--- 117 G V L IS +RR + + I TV + G+ + D + + Sbjct: 59 --GAIVTDQALTNVISGLRRNLIQL-EAEGIAIKTVSKVGYLLTVDETVVMQPVIEPKII 115 Query: 118 TDAHTHNAPPAIKVNAGYKE---------------SIGGAKNFNNKILKHIKSHL--IML 160 + P A+ V+ ++ + + +++ K L ++ Sbjct: 116 PPVIDNIEPKAVLVSPQAEDPLRVHDNVAISNDVQVLPTTEVGRSRVRLLTKPSLKSALI 175 Query: 161 SAFVIGAYSAYWLWNNNQPKPFF--KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRIL 218 + + +A + P+F K+ EI F + +T G + ++ + Sbjct: 176 AFCLCSLIAAVCWYEKASSVPYFLVKENYNHFEIKNTDFYILNNT-RGKDNIEAIQSGLE 234 Query: 219 DSGI-NCKKHPWLYFPLAKS 237 + C + +Y + S Sbjct: 235 SLNLVEC--NAEIYIRMYDS 252 >UniRef50_B1J1E8 Two component transcriptional regulator, LuxR family n=3 Tax=Pseudomonas putida RepID=B1J1E8_PSEPW Length = 330 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 9/133 (6%) Query: 24 ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83 V L A L+ L++A VV + + F+ VW G V N L IS++R+ F Sbjct: 19 DGKPVPLGGRAFEVLATLIKAKGRVVGKDELFSEVW--AGTVVEDNNLQVQISLLRKAFG 76 Query: 84 AVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKV--NAGYKESIGG 141 A G LI TVPRRG+++ D+ + A + + +A + Sbjct: 77 APG-----LIQTVPRRGYRLAVDVVLDLPCTALGRSPLKDAAEALVPLGDSASVPVLVVD 131 Query: 142 AKNFNNKILKHIK 154 K L + Sbjct: 132 DDPSVRKALARLF 144 >UniRef50_B6EKJ8 Putative transcriptional regulator n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EKJ8_ALISL Length = 542 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 6/114 (5%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + IND E++ ++ D V + L L + +V + + VW+ Sbjct: 6 FQINDWTLVIEENK----LYRQDREVSVEPRLVNLLRFLAQHSGEVFCRDELIQHVWD-- 59 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS 116 G V + Q+I +R+ R + TVP+RG+K+ D + N Sbjct: 60 GAFVTDQVVTQSIFELRKILRDGRLDNARYLVTVPKRGYKLVADTQLVNFEETE 113 >UniRef50_D1VIP6 Two component transcriptional regulator, winged helix family n=1 Tax=Frankia sp. EuI1c RepID=D1VIP6_9ACTO Length = 248 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 7/100 (7%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + + R++ + L+ + L LL V++ VW + G Sbjct: 156 GALRLDEDARRVTV---GGRTIALSPTEYKLLRFLLRNAGRAVSRAQILDHVW-DYGFDG 211 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 + + IS +R+ V +LI TV G+++ + Sbjct: 212 ESTVVETFISSLRKK---VDTAPPTLIHTVRGVGYRLSEE 248 >UniRef50_UPI00017890B9 putative two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017890B9 Length = 272 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 5/103 (4%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M +I ++ + + H + LT L LLL++ V ++D ++W Sbjct: 173 MRGLIYKDLSIDRDKMTI---HRGSTPIHLTKTEYHLLMLLLDSEGAVCTREDLMCKIW- 228 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103 + +N + +I +R+ IATV G+++ Sbjct: 229 DTDFMGGSNVVDVHIKSLRKKLNDNAGAPR-YIATVRGVGYRL 270 >UniRef50_Q987X1 Transcriptional regulator n=1 Tax=Mesorhizobium loti RepID=Q987X1_RHILO Length = 903 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 6/119 (5%) Query: 9 IEFWPEH--RKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 F P R+ ++ + L + A L +L+ +VV ++ VW + V Sbjct: 6 FRFGPFEMHREQRRLYRDGKLLQLGSRAFDILQILVMRAGEVVRHEELIAMVWPD--TFV 63 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125 N L N++ +RR G T+ LIA VP RG+ + Q + + D H ++ Sbjct: 64 AENNLRVNMTALRRALGPEGSLTNGLIANVPGRGYSFTAPVAHQT--VEHAPDRHDNSE 120 >UniRef50_B1M5U0 Transcriptional regulator domain protein n=3 Tax=Rhizobiales RepID=B1M5U0_METRJ Length = 525 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 18/186 (9%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M + R+L + + L +L+E VV++ D VW Sbjct: 1 MIYRF-GPFTLDSARREL---SRDGAEIAVEPQVFDLLRVLIERRDRVVSRDDLLEAVW- 55 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 G V TL I+ R G T I T+PR+G + + ++ Sbjct: 56 -NGRIVSEATLGSRINAARTAIGDTG-TGQRWIRTLPRKGVRFVGAVREAASEVSPGIAP 113 Query: 121 HTHNAP----------PAIKVNAGYK-ESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYS 169 P PA+ V + F + + + I + L +S + A + Sbjct: 114 EDAAEPGVTWRAGPRLPAVAVLPFTNMSADPEQDYFADGMTEEIITALSRVSGLFVIARN 173 Query: 170 AYWLWN 175 + + + Sbjct: 174 STFTYR 179 >UniRef50_B0G6G3 Putative uncharacterized protein n=2 Tax=Lachnospiraceae RepID=B0G6G3_9FIRM Length = 224 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 6/94 (6%) Query: 15 HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74 H K + V+ D V L+ L L E +V+++ VW+ +G V NT+ N Sbjct: 135 HMKTMQVYKGDEPVTLSKKEFSLLLYLWENAGQIVSKESILEHVWDIDGQFVDDNTVTVN 194 Query: 75 ISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108 IS ++ IA V G+ +N Sbjct: 195 ISRLKNKLGT------EEIANVRGLGYIWTGKVN 222 >UniRef50_A5L4K5 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5L4K5_9GAMM Length = 294 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 33/263 (12%), Positives = 72/263 (27%), Gaps = 36/263 (13%) Query: 8 NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 ++ + R LI+ V L+ L L++ + ++ T W G V Sbjct: 10 DLVIELDDRTLINPSLN-KVVTLSPSECLLLKYLMDNCSQTLGREFLLTHCWP--GRIVT 66 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN---------DINIQNHVINSST 118 ++L I +R + VG + TV + G+ DI ++ ++++ + Sbjct: 67 NSSLNVAIKNVRSALKEVGSDCK--VITVQKEGYCFVAPENSVETDSDIALERNIVSENL 124 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHL--------------IMLSAFV 164 P + ++ + + +K+ + S F+ Sbjct: 125 AEQGKGIPQSASLSEQDSSTCSESTVLESKLASDLNEVADAQVLSENTQAKGKQASSNFI 184 Query: 165 IGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKT--------R 216 + + A ING ++ D Sbjct: 185 PLISGLAVSLFIVIILSYLGLFMERASINGIDVYHDNIELEQELVEDLTSLAKPGVEAIY 244 Query: 217 ILDSGINCKKHPWLYFPLAKSSP 239 + GI C + Sbjct: 245 LHRMGIECGGMQVVVLDENGWQD 267 >UniRef50_A5P8P2 Transcription activator ToxR n=1 Tax=Erythrobacter sp. SD-21 RepID=A5P8P2_9SPHN Length = 342 Score = 99.0 bits (245), Expect = 1e-19, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 6/102 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + R+L+ V L + L LL +++++ F VW G+ V Sbjct: 11 GDFTLDLHGRRLLR---GGEAVELGSRYFDALVLLATHPGELISKTRFMDDVW--RGIPV 65 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108 L Q I +RR I TVP+ G++ +++ Sbjct: 66 TDEALTQAIRTLRRALGDEASAPR-YIETVPKHGYRFIAELD 106 >UniRef50_D0X6S7 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0X6S7_VIBHA Length = 222 Score = 99.0 bits (245), Expect = 1e-19, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 54/167 (32%), Gaps = 9/167 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + + + + +TT S L L+ VV++ W + Sbjct: 19 GSCLLKVQQHACELIVESGKRYNITTKESDVLKTLVTNLGKVVSKDALIRAAWGNPEIIG 78 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126 N+L IS +R+ I VPR+G+++ ++ S A Sbjct: 79 S-NSLPVAISNLRKVLE----PEKIKIVNVPRQGYQLE----VECMGSGESNSEQAEEAT 129 Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL 173 + + + + + NKI ++ FV +S W+ Sbjct: 130 EQVVASKPERNTSKRIETNTNKISVICAWLSLLYVMFVASYFSFSWV 176 >UniRef50_B1KWY3 DNA-binding response regulator n=33 Tax=Firmicutes RepID=B1KWY3_CLOBM Length = 237 Score = 99.0 bits (245), Expect = 1e-19, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 4/104 (3%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 II+ +I K+ + ++LT + L +L+E +V+++ ++W+ Sbjct: 138 NKIISKDITIELLKAKVF---KGEEEILLTAGEYKLLLILVENKGNVLSRNILLEKIWDV 194 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 +G V NTL I +R I TV G++ Sbjct: 195 DGSFVDGNTLNVYIKRLREKIEK-DPKKPEYIETVRGIGYRWSE 237 >UniRef50_Q2NVH3 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NVH3_SODGM Length = 251 Score = 99.0 bits (245), Expect = 1e-19, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 14/174 (8%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 +I F+P+ R L L S L+LL +P+ V +F VW G Sbjct: 16 VITSCFTFYPKKRCLEL---EGTIHQLRKKESEVLALLCRKYPNPVHHSEFLDEVWG--G 70 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 V ++++ Q I +R+ + G ++I T+P+ G+++ + D Sbjct: 71 GYVTSHSIAQVIRSLRKLLKKNG---KNIILTIPKLGYRLGIEPQYDEGNEVKIFDFSQE 127 Query: 124 NAPPAIKVN------AGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171 NA + + + + + + + L++ +Y Y Sbjct: 128 NAGNSAEEDYFVSSGDRHPSTPPPRLYQTSGKVVKWFFRLLIFMLLFPASYGVY 181 >UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IVX4_DEIGD Length = 225 Score = 99.0 bits (245), Expect = 1e-19, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 7/99 (7%) Query: 8 NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 ++ + R++ V L+ L LL V ++ + +VW E Sbjct: 134 DLVMNLDGREIFR---GGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVWPEY--TGG 188 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 +N + I +RR G LI TV G+ + + Sbjct: 189 SNVVDVYIGYLRRKLEEGG--ERRLIHTVRGVGYVLREE 225 >UniRef50_B1JQB0 Transcriptional regulator, CadC n=18 Tax=Yersinia RepID=B1JQB0_YERPY Length = 250 Score = 99.0 bits (245), Expect = 1e-19, Method: Composition-based stats. Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 8/109 (7%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M I+ +++ F P+ R + + S LSLL E +P+ ++++D R+WE Sbjct: 1 MNTIVINDVFFTPQKRTI---DRNGKVTKIRNKESELLSLLCEYYPEPISREDIEKRLWE 57 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI 109 G V NTL Q IS +R H L+ T+P++G++I I Sbjct: 58 --GSYVTDNTLTQTISNLRHALDD---KKHELVVTIPKKGYRIGIKPEI 101 >UniRef50_A5UT44 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=A5UT44_ROSS1 Length = 261 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 5/110 (4%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 I ++ P R++ V LT L LL V ++++ RVW Sbjct: 143 IEIGALQIDPRRREVYV---NHHPVELTPKEFELLHLLASHPGRVFSREELLERVWG-YS 198 Query: 64 MRVPTNTLYQNISIIRRGFRAVGD-TTHSLIATVPRRGFKIHNDINIQNH 112 T T+ +++ +R G+ + +++I+T G+K+ + ++ Sbjct: 199 YMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLESPALLEAE 248 >UniRef50_Q03AM3 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=7 Tax=Lactobacillus RepID=Q03AM3_LACC3 Length = 215 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 1/85 (1%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 V + VVLT R L+ ++A+ +W+ V NTL I +R Sbjct: 132 VTKNETAVVLTAAEYRLLAYFFANPNQILARDQLLAALWDTREQFVADNTLTVTIKRLRE 191 Query: 81 GFRAVGDTTHSLIATVPRRGFKIHN 105 +LI TV G+ I Sbjct: 192 KLED-DPAHTTLIRTVRGMGYFIDG 215 >UniRef50_C5ZZN9 Putative uncharacterized protein n=1 Tax=Escherichia coli Vir68 RepID=C5ZZN9_ECOLX Length = 216 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 80/217 (36%), Gaps = 24/217 (11%) Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 M V N LYQ+IS++R+ G T ++I T PRRGF + +I I + + D + Sbjct: 1 MEVGPNALYQSISMLRKALSTCG-TPDNIILTAPRRGFSLSQEICISCDNLQEAMDEQSS 59 Query: 124 N-APPAIKVNAGYKESIGGA-------------KNFNNKILKHIKSHLIMLSAFVIGAYS 169 + + K+N + E++ + K + I S F Sbjct: 60 DWLNGSDKMNETHGENLMKEMWGAIPSESEMMEISSEYVRDKQCRKRKIDSSIFYYILIL 119 Query: 170 AYWLWNNNQPKPFFKD----YKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCK 225 L F Y E NGC+ + + D + +L +GI C+ Sbjct: 120 LTILSLIVPVYLVFLSDGEHYSKRFEFNGCYVYSRDASND-----NNTMDIVLKTGIKCE 174 Query: 226 KHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLS 262 ++Y + ++ C K + + NC++ Sbjct: 175 DRRYVYVTYFQGGDRESLIQCRKPLSTFSLPNCISYY 211 >UniRef50_Q5E341 DNA-binding transcriptional activator CadC n=9 Tax=Vibrionaceae RepID=Q5E341_VIBF1 Length = 541 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 17/166 (10%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + IND E++ ++ D V + L L + +V + + VW+ Sbjct: 6 FQINDWTLVIEENK----LYRQDREVSVEPRLINLLRFLAQHSGEVFCRDELIKHVWD-- 59 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHV--------- 113 G V + Q+I +R+ R + TVP+RG+K+ + Sbjct: 60 GAFVTDQVVTQSIFELRKVLRDGRLDNTRYLVTVPKRGYKLVAETKQIRLEDTPYWKPCD 119 Query: 114 --INSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHL 157 ++ D + ++ ++ +F L +++ Sbjct: 120 TFTSTEADENQNHNVELNTEEQEKEQDETAQLSFPAGPLTRAVTNI 165 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 5/100 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 N+ R + + V LT L L+ V + ++W + Sbjct: 134 GNLTLDYTKRTVAV---NNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKIW-DSSFYG 189 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 NT+ +I +R + I TV G+K + Sbjct: 190 DDNTVTVHIRRLREKV-ETDPSNPEYIKTVWGMGYKFEYE 228 >UniRef50_B5EQN9 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B5EQN9_ACIF5 Length = 243 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 3/84 (3%) Query: 19 ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78 V+ ++ V L R L L + V ++ ++W + V T+ +I + Sbjct: 149 HRVYADEVQVHLGPTEFRLLRLFVTNPERVFSRDMLLDQIWGRQS-FVEERTVDVHIRRL 207 Query: 79 RRGFRAVGDTTHSLIATVPRRGFK 102 RRG G +I TV G++ Sbjct: 208 RRGLEHHGYAQ--IIETVRGEGYR 229 >UniRef50_A5KUS7 DNA-binding transcriptional activator n=1 Tax=Vibrionales bacterium SWAT-3 RepID=A5KUS7_9GAMM Length = 615 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 8/144 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 D F P+ KLI + +V++ S+ L + V ++ + VW G + Sbjct: 11 DVWLFIPDEDKLIM---DNEDVIIDNRLSKLLDFFCQNPNIVFSRDELINEVW--NGSIL 65 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---IQNHVINSSTDAHTH 123 + Q I +R+ ++ + I TVP+RG+K ++ + I ++T + Sbjct: 66 TDQVITQAIFELRKTLKSAERHSMGYIITVPKRGYKFDVEVKKTVLVPPPIVTNTVSLAD 125 Query: 124 NAPPAIKVNAGYKESIGGAKNFNN 147 V+ + S + N + Sbjct: 126 TVSYDETVSQEQEASPVSSPNSES 149 >UniRef50_B2T985 Transcriptional regulator, winged helix family n=2 Tax=Burkholderia RepID=B2T985_BURPP Length = 504 Score = 98.3 bits (243), Expect = 2e-19, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 6/112 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 +P R+L + V L + A L L++ VV ++ +R W + V Sbjct: 28 GPFTLFPTERRL---ERSGSVVQLGSRALDILIALIQHAGQVVDRRKLMSRAW--RNIVV 82 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118 + L NI+ +R+ G+ + VP G+ + + SS+ Sbjct: 83 DESNLRVNIAGLRKALGD-GEDGVRYVKNVPGIGYCFVGQLTRERIATESSS 133 >UniRef50_A5ED47 Transcriptional regulator n=1 Tax=Bradyrhizobium sp. BTAi1 RepID=A5ED47_BRASB Length = 972 Score = 98.3 bits (243), Expect = 2e-19, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 12/159 (7%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 E + R+L + V L A + +L+++ +V + + ++VW G V Sbjct: 34 GEWEIDLDRRELRAR---GGPVPLGGRAFEIMEVLIKSEGKLVTKDELLSQVWP--GATV 88 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA---HTH 123 NTL +IS +R+ ++ T+ RG+++ + T H Sbjct: 89 EENTLQVHISALRKALG----PDREMLKTISGRGYRLLGTWAPRASGAVLRTSPVHFHAV 144 Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSA 162 + + G + + ++ ++ Sbjct: 145 SGATFQTNLPEATSELIGRDAAGQHLRNLLSTYRVVTLT 183 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 5/108 (4%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + PE RK+ V LT+ L L ++ + VW Sbjct: 143 GKVVVEPEKRKVTV---EGEAVDLTSKEFELLLLFARHPGRAFSRDELLDEVWG-YQYSG 198 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI 114 ++T+ +I+ +R + + TV G++ + + Sbjct: 199 YSHTVNTHINRLRNKIE-PDPSEPRYVKTVWGVGYRFAEREELAARDV 245 >UniRef50_B1XXD9 Two component transcriptional regulator, winged helix family n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XXD9_LEPCP Length = 263 Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 4/99 (4%) Query: 7 DNIEFWPEHRKLISVHNAD-LNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65 +E P+ R++ H + + L + L L+ V+++ VW E+G Sbjct: 153 GPLEIDPDQRRVTLRHAGGLVELDLAPTEIKLLGCLMAHPDRVLSRDQLLALVWGEDGTT 212 Query: 66 VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104 T+ QNI +RR F A G LI TV G+++ Sbjct: 213 -DPRTVDQNIRRLRRCFEAAG--AGELIRTVRGLGYRLT 248 >UniRef50_Q12T20 Two component transcriptional regulator, winged helix family n=11 Tax=Gammaproteobacteria RepID=Q12T20_SHEDO Length = 225 Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 3/84 (3%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 V A+ ++L + L L+E V+++ F VW + TN + +I+ +RR Sbjct: 142 VTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW-DYHFDPRTNVIDVHIAKLRR 200 Query: 81 GFRAVGDTTHSLIATVPRRGFKIH 104 F +G +I TV G+++ Sbjct: 201 KFEEIGF--PEMIETVRGAGYRLS 222 >UniRef50_C7RA75 Transcriptional regulator, CadC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RA75_KANKD Length = 741 Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 65/181 (35%), Gaps = 17/181 (9%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + +P+ LI + + A L + VV++ + VW G V Sbjct: 8 GSWLVFPDRNSLIF---QEEEHNIEPLAMDVLVYFTQNPQKVVSRSELIEAVW--SGRVV 62 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ----------NHVINS 116 +++Y+ I+ +R+ D + I T+ ++G+++ D+++ V ++ Sbjct: 63 GDHSVYRIINKLRQILAR--DPSREYIKTIRKKGYQLVCDVSVSVSGLLKESFTEEVNDN 120 Query: 117 STDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNN 176 + + + + + G I LI+L V+G + + Sbjct: 121 EHERLSESGLLSSDKSQHGVMVSKGKLTKRGLWRSSIFWGLILLIVSVVGFLTVKLYFYY 180 Query: 177 N 177 + Sbjct: 181 S 181 >UniRef50_A3D2S0 Transcriptional regulator, CadC n=3 Tax=Shewanella RepID=A3D2S0_SHEB5 Length = 1067 Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 9/164 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + P L+ L A L L + +VV+ + + W G+ Sbjct: 13 GEWQINPSANSLLL---GKQVKQLEPKAMDVLLFLCQRAGEVVSSDEIVSHCWP--GVDT 67 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN--IQNHVINSSTDAHTHN 124 N L++ I+ +RR I T+ +RG++ ++ I + + Sbjct: 68 GDNPLHKIINQLRRALDDSATDP-IYIETIRKRGYRTLAEVRFPIGHEATACPQSWQGGS 126 Query: 125 A-PPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGA 167 P +A Y E G + +L I +I AF + Sbjct: 127 PFPGLQAYSANYAEVFFGRSEQISTLLNRISQQIIYGRAFCLVL 170 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 5/100 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 ++ KL+ + V LT L + +E + +++ +W E Sbjct: 137 GSLHLDTAANKLL---KNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIWGE-DYFG 192 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 T TL +I +R + I T+ G++ + Sbjct: 193 DTKTLDVHIRRLREKIED-NPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_C4L1R5 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L1R5_EXISA Length = 230 Score = 98.3 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 5/97 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 +N+ + R+ ++ + LT L+ + V+ + + VW E V Sbjct: 139 ENVTLDLQTRQ---CRKDEMLIRLTPKEFDILAYFMRHPNQVLTVEQIYEAVWGEAAFEV 195 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103 NT+ +I+ IR ++I TV G+++ Sbjct: 196 -DNTVMVHITKIREKLEDTPRKP-TIIKTVWGVGYRL 230 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 97.9 bits (242), Expect = 3e-19, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 4/102 (3%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 I+ + E R + ++ + LT L LL V + + F +VW E Sbjct: 141 IVAGGLTIDQEQRNVTLYND---RIDLTPKEFDILYLLASHPKKVFSAEHIFQQVWGEAY 197 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 NT+ +I +R+ I TV G+ Sbjct: 198 YESGGNTVMVHIRTLRKKLGE-DKQHQQWIKTVWGVGYAFQG 238 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 97.9 bits (242), Expect = 3e-19, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 26/100 (26%), Gaps = 5/100 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 +I L V T R L L V + VW E V Sbjct: 135 GDIVIDNGAMTLTVR---GNLVTTTATEFRLLEYLARHPGRVFTRDQLLDAVWRETH-YV 190 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 ++ + IR + + TV G++ Sbjct: 191 TPRSVDVYVRRIREKIEENPEDPR-YLKTVRGAGYRFEVP 229 >UniRef50_D2TJ93 Lateral flagellar transmembrane regulator n=1 Tax=Citrobacter rodentium ICC168 RepID=D2TJ93_CITRO Length = 325 Score = 97.9 bits (242), Expect = 3e-19, Method: Composition-based stats. Identities = 28/241 (11%), Positives = 62/241 (25%), Gaps = 33/241 (13%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 I+ +N LI + L L L + V+++ VW+ Sbjct: 12 IVVNNWRMDSSLNALIHCETGETR-RLGEYHFILLETLAKNADSVLSRSYLMAEVWKNR- 69 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH------------------- 104 V N+L I +R G +I T+P++G+ + Sbjct: 70 -IVGGNSLPTAIHALRVAIDDDG-KQQEIIKTIPKKGYLFNKDYLTIEYSSEAAEHVVLS 127 Query: 105 -----NDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIM 159 ++ + +T A A + + + I Sbjct: 128 ENKNKENLTTTDFTAAEATAPWPLTADEAADQQLPSTAVVPPPAEPSRRRNTLFIGAGIA 187 Query: 160 LSAFVIGAYSAYWLWNNNQPKPFF-----KDYKTVAEINGCHFNVTEDTIDGLKEFDKYK 214 + A + + Y+ P + + + H + ++ Sbjct: 188 VIALFLLSLIYYFQAPTTPVSPDSPRLVKETFDHADNMEIYHLYTSTTNKKSTSLLAQHI 247 Query: 215 T 215 + Sbjct: 248 S 248 >UniRef50_Q2C702 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C702_9GAMM Length = 267 Score = 97.9 bits (242), Expect = 3e-19, Method: Composition-based stats. Identities = 44/254 (17%), Positives = 86/254 (33%), Gaps = 24/254 (9%) Query: 1 MYWII--NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRV 58 M I N+ + P R+L S N N LT + L++LLEA + ++ F Sbjct: 1 MDKKIYQIHNLTYDPVVRRLSS--NDGKNAFLTPKEACVLTILLEAKDQCINKEVLFCGC 58 Query: 59 WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118 W E V +L IS +R+ ++V I+TV + G+ + + ++ Sbjct: 59 WGE--TIVTEQSLTNIISKLRKILKSV-CGDLITISTVIKEGYILEILPETKIEDVSD-- 113 Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178 N ++ A + + K I ++F++ + + Sbjct: 114 ------------ENLVKEQCCKPATHTMSTDKKRYIICSIFFASFLMIISIYTYYARKSP 161 Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSS 238 ++Y IN F + T + +C ++ + + Sbjct: 162 FFLDKQEYNITKNINKSRFYLQSMTKKRNASDPLFDALAATIPTDCNLDLFVRIYQSIDA 221 Query: 239 P---GMIVMACNKN 249 P GM + N + Sbjct: 222 PEKEGMSIFLVNSD 235 >UniRef50_B5WFU1 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia sp. H160 RepID=B5WFU1_9BURK Length = 558 Score = 97.9 bits (242), Expect = 3e-19, Method: Composition-based stats. Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 6/156 (3%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 +P R+L + V L + A L +L++ VV ++ +R W + V Sbjct: 82 GPFTLFPAQRRL---ERSGSFVQLGSRALDILIVLIQHAGQVVDRRMLMSRAW--RNIVV 136 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126 + L NI+ +R+ G+ + VP G+ + + V S + + Sbjct: 137 DESNLRVNIAGLRKALGD-GEGRVRYVKNVPGIGYCFVGQLTRERIVAESGSQIAEPSPC 195 Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSA 162 G + ++ H ++ Sbjct: 196 VHSADFGPGAACPQGRDEVLRTLASDLRRHRLISIV 231 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 97.9 bits (242), Expect = 3e-19, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 5/102 (4%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 +I + R V + L + L L E V + + F +W + Sbjct: 137 LIFGELAID---RDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHLFDSIWGK-D 192 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 T+ +IS +R+ I TV G+K + Sbjct: 193 SFGDIRTVMVHISNLRKKIEQ-DPARPEYIITVRGMGYKFNG 233 >UniRef50_C6LC42 DNA-binding response regulator RegX3 n=3 Tax=Clostridiales RepID=C6LC42_9FIRM Length = 224 Score = 97.9 bits (242), Expect = 3e-19, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%) Query: 26 LNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAV 85 + L++ + L LL+E V ++ +VW+ G V NTL + +R Sbjct: 148 EEIRLSSLEYQILLLLMENKGKTVTRKQLLEQVWDSGGNFVNDNTLTVAMKRLREKLH-- 205 Query: 86 GDTTHSLIATVPRRGFKIHNDI 107 S + T+ G+++ I Sbjct: 206 ---NPSCLKTIRSFGYRMEESI 224 >UniRef50_Q12RS3 Transcriptional regulatory protein-like protein n=1 Tax=Shewanella denitrificans OS217 RepID=Q12RS3_SHEDO Length = 678 Score = 97.9 bits (242), Expect = 3e-19, Method: Composition-based stats. Identities = 29/206 (14%), Positives = 63/206 (30%), Gaps = 24/206 (11%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++ DNIE L+++ + + L L + +++ + VWE Sbjct: 1 MIFVF-DNIEINTA---LVTITRNRQALEIEPKLFSLLVYLCQNPNRAISRDELINTVWE 56 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 V + + I +R+ I TV + G+++ + Sbjct: 57 NR--FVSEAAINRAIGQLRKHIEDDTSHPK-YIRTVSKVGYRLDAVVQ------------ 101 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180 + P A K+ +N + K I +++S ++ Sbjct: 102 ---HIPQAQFQWEAKKQLSNNKRNISPK--AVIFVFFVLISIILVLFTVPQLDTPQLSTS 156 Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDG 206 + + + FN DT + Sbjct: 157 VSIDNISPITTSSNISFNPHFDTANN 182 >UniRef50_D0MGI0 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MGI0_RHOM4 Length = 243 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 8/101 (7%) Query: 6 NDNIEFWPEHRKLISVHNAD-LNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64 ++E + + V L L L V +Q+ VW + Sbjct: 150 IHDLEIDRDRYLVYREGPEGRETVRLPRKEFELLYFLAAHPGKVFTRQELLDEVWG-RDV 208 Query: 65 RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 V T+ +I IR I TV G+K Sbjct: 209 YVVDRTVDVHIRKIREKLG------SHYIETVKGVGYKFRE 243 >UniRef50_Q0HTC3 Lysine decarboxylase transcriptional regulator, CadC n=3 Tax=Alteromonadales RepID=Q0HTC3_SHESR Length = 1075 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 9/164 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + P L+ L A L L + +VV+ + + W G+ Sbjct: 9 GEWQVNPSANSLLL---GKQVKQLEPKAMDVLLFLCQNAGEVVSSDEIVSHCWP--GVDT 63 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH---TH 123 N L++ I+ +RR T I T+ +RG++ ++ S+T Sbjct: 64 GDNPLHKIINQLRRALGDSA-TESRYIETIRKRGYRTLAEVRFPVGHEASATPQTWQGGS 122 Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGA 167 P +A Y + G + +L I + AF + Sbjct: 123 PFPGLQAYSANYADVFFGRSEQISTLLNRISQQIQFGRAFCLIL 166 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 97.5 bits (241), Expect = 4e-19, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 2/83 (2%) Query: 24 ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83 + LT L L + V+++Q VW + T + +IS +R Sbjct: 150 DGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHGVW-DYHFLGDTRIVDVHISHLRDKIE 208 Query: 84 AVGDTTHSLIATVPRRGFKIHND 106 T I TV G+K+H Sbjct: 209 QNARTPE-YIMTVRNVGYKLHAP 230 >UniRef50_A3ER20 Putative two component transcriptional regulator, winged helix family n=2 Tax=Leptospirillum sp. Group II RepID=A3ER20_9BACT Length = 259 Score = 97.5 bits (241), Expect = 4e-19, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 5/97 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 ++ + + LT R L L+ V+ +++ +W E V Sbjct: 149 GDLVVDTYRYE---TRIDGREIRLTPIEFRILVYLVSHEDVVIRREELMKVLWGES-WEV 204 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103 + L +I +RR D+ I T+ G++ Sbjct: 205 DEHNLNVHIWALRRKLGEKSDSPR-FIETLRGTGYRF 240 >UniRef50_B2SNG2 Transcriptional regulatory protein, C terminal n=8 Tax=Xanthomonas RepID=B2SNG2_XANOP Length = 772 Score = 97.5 bits (241), Expect = 4e-19, Method: Composition-based stats. Identities = 18/123 (14%), Positives = 46/123 (37%), Gaps = 2/123 (1%) Query: 23 NADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGF 82 A+ + L + L L VV ++ VW + + + Q ++ +R+ F Sbjct: 13 GAERPLRLAPKSLAVLLALARQPGQVVTREQLLAEVWPD--TLPTNDVVTQAVTQLRKAF 70 Query: 83 RAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGA 142 + G I T+ + G+++ + + H S+T + ++ ++ + Sbjct: 71 ASHGGQRSEHIETIAKTGYRLMAAVVWEAHAPGSTTLPQESPGVQSPELAQADDGAVPAS 130 Query: 143 KNF 145 + Sbjct: 131 VSV 133 >UniRef50_C8WRL6 Two component transcriptional regulator, winged helix family n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRL6_ALIAD Length = 221 Score = 97.5 bits (241), Expect = 4e-19, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 8/107 (7%) Query: 3 WIINDN-IEFWPEHRKL--ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVW 59 + +N F L V V LT L LL ++Q+ RVW Sbjct: 118 YEVNGAPFRFGEATVHLDAHRVVYRGQEVDLTAREYDLLLYLLRNVNRTCSRQELLERVW 177 Query: 60 EEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 + TN + I +R+ D I TV +G+++ + Sbjct: 178 GFQ-APGDTNVVDVYIGYLRQKL----DPERRYIKTVRGQGYRLEVE 219 >UniRef50_Q6LJ01 Putative uncharacterized protein n=2 Tax=Photobacterium profundum RepID=Q6LJ01_PHOPR Length = 433 Score = 97.5 bits (241), Expect = 4e-19, Method: Composition-based stats. Identities = 43/268 (16%), Positives = 91/268 (33%), Gaps = 44/268 (16%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 + F ++L + + L L L++ VV ++ + W Sbjct: 8 KVTLGKGFTFDCSTKEL---KENERFIRLNRAEREILCYLIQHANSVVKKKQLLSVGWTR 64 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 + + T +L+Q I +R + D +I PR G++I Sbjct: 65 K--EITTTSLFQTIRNLRIKLKE--DEIGQIIEMAPRLGYQI------------------ 102 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 KV+ S+ + K K+ + ++ L I + + + ++ + K Sbjct: 103 --------KVDPFSTSSVQNTIESSKKTHKNKRYKIVSLCLLFIVCFFSLFFFSQH-SKK 153 Query: 182 FFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGM 241 + + ++N + ++ D D KT + + I+ + F +AK+ Sbjct: 154 YLHEIAYDDDMN-TFIYLAKEMDDLEFLRDYTKTFV--TPIDIENKL---FFIAKAGKYY 207 Query: 242 IVMACNKNYNQHEVANCLTLSYREVNRD 269 V C+K E C + + V D Sbjct: 208 SVAFCDK----TEQNTCKLTTTKAVTFD 231 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 97.5 bits (241), Expect = 4e-19, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 5/100 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + R L A V LT + L L L V ++ +V ++ Sbjct: 134 GDAVLDQNSRSLTI---AGTPVELTPTEYKLLELFLAHPGQVFSRLQLIEKV-QDYAFEG 189 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 T+ +I +R+ A I T+ G+K+ + Sbjct: 190 YERTVDSHIKNLRKKLGAS-PDEPHYIKTIYGVGYKLVGE 228 >UniRef50_C6D5Y8 Putative two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D5Y8_PAESJ Length = 255 Score = 97.5 bits (241), Expect = 4e-19, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 2/84 (2%) Query: 23 NADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGF 82 + LT L + L + V+ ++ F VW + +N + +I +RR Sbjct: 171 RGGERIELTKTEYDLLLMFLTSDGAVLTREAMFDAVWGSQ-YFGGSNVVDVHIKTLRRKL 229 Query: 83 RAVGDTTHSLIATVPRRGFKIHND 106 + H IATV G+++ + Sbjct: 230 KDSAVAPH-YIATVRGVGYRLVEE 252 >UniRef50_B1T3M3 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia ambifaria MEX-5 RepID=B1T3M3_9BURK Length = 934 Score = 97.5 bits (241), Expect = 4e-19, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 6/148 (4%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + +P+ R+L D + A LSLL+ +VV+Q++F +VW G V Sbjct: 12 GSFRLYPDERRL---ERGDEIAEIGNRAFDILSLLVHRPGEVVSQKEFQEKVWP--GSVV 66 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126 L I+ +R+ ++H I ++ RG+ + ++ +A + Sbjct: 67 GDVNLRVQITALRKLLSEDAASSHG-IRSITGRGYCFVGPVTYTTLNNTAAAEALGDASN 125 Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIK 154 + + + K L I Sbjct: 126 DISNLIGRRTAIEDICRLLSTKGLVSIV 153 >UniRef50_B1KFP5 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC 51908 RepID=B1KFP5_SHEWM Length = 725 Score = 97.5 bits (241), Expect = 4e-19, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 62/180 (34%), Gaps = 8/180 (4%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 + + D + P ++S + + A + L L+ + V++ VW Sbjct: 6 RYRLADKVV-DPAQCTILS---DGNLLKVELRAMQVLLCLINHAGEPVSRDMLLDEVW-- 59 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121 G V N + + I I+R + I T+P+ G+ + I + V A Sbjct: 60 SGGEVSDNAINRIIGILRNQLGDNAKSPE-FIKTLPKVGYVLIAPITLVKEVTKHEKFAT 118 Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181 A ++V K + F K ++M + +S Y + +N + Sbjct: 119 EVIAGAELEVE-ESKRLVFKRSLFATLYQHAGKMSILMAGLLSLLLFSVYQISHNESSES 177 >UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=16 Tax=Firmicutes RepID=B7GFY6_ANOFW Length = 226 Score = 97.1 bits (240), Expect = 5e-19, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 4/90 (4%) Query: 15 HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74 +R ++ ++LT + L LLL+ V+ + R+W V T+ Sbjct: 140 NRTSHTLLKDGEQIILTPREFQLLDLLLQNRGRVLTRDIILDRIWG-YDADVSMKTIDAT 198 Query: 75 ISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104 + ++R+ GD LI TV G+ I Sbjct: 199 VKLLRKKI---GDEQQQLIKTVRGVGYTIE 225 >UniRef50_A3EHX3 Putative transcriptional regulator ToxR n=6 Tax=Vibrio RepID=A3EHX3_VIBCH Length = 255 Score = 97.1 bits (240), Expect = 5e-19, Method: Composition-based stats. Identities = 37/264 (14%), Positives = 77/264 (29%), Gaps = 20/264 (7%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 + I+ I ++ + + L T L L E ++ ++ + W Sbjct: 2 YKIDQKIL--SSDSPFLTDSLSREQIKLGTHEHLVLLALCEQAGKLIDKETLIKKGWP-- 57 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122 G V ++L Q + IR G + I T+ ++G+ I + T Sbjct: 58 GKFVTDSSLTQAVRNIRAYLNDDGKSQKH-IKTIAKKGYLIESKFV---------TLIQD 107 Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182 + + K+ G K K S L+ L + Y Y + K Sbjct: 108 FDKNQISNLQQETKKESFGKKESFGKKYILFLSILVQLLFIIYSIYKIYPITTVAIDKEI 167 Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMI 242 + + + + + + + + LY L K + Sbjct: 168 YPILSY--QQDYIYIYSDDFQYSEQLGVELIHSLSAERI----SPERLYIMLNKETVSYS 221 Query: 243 VMACNKNYNQHEVANCLTLSYREV 266 + N + T Y+++ Sbjct: 222 FIEKNGKSKNRIIFTAGTKDYKKI 245 >UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteobacteria RepID=Q1NLC6_9DELT Length = 298 Score = 97.1 bits (240), Expect = 5e-19, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 N+E ++ V V LT + L+ L+E +V +++ R+W + + Sbjct: 204 GNLEIDLRNQT---VKVDGQEVYLTAKEFQLLACLMENRNHLVTREEIRKRLWRDSKIYS 260 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 + + +I +R+ H I TVP RG++ Sbjct: 261 WSRVIDVHIQHLRQKVEETPSQPHH-IVTVPGRGYRFME 298 >UniRef50_C6AVM9 Response regulator receiver protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AVM9_RHILS Length = 277 Score = 97.1 bits (240), Expect = 5e-19, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 13/161 (8%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 P R+L+ + A L +LL + +V++ + VW M V Sbjct: 38 GRFCAIPHSRQLLL---DGRPHEIGGRAFDLLMVLLRSNGRIVSKDEILNEVWP--SMVV 92 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH--- 123 L + +RR + G ++I T+ RRG+ + D + + + T T Sbjct: 93 EECNLRFQVKSLRRALGSQG----NMIKTIVRRGYMLIRDDVVPDDEVRFDTTRLTTISG 148 Query: 124 -NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAF 163 + P A+K A Y I ++ I ++S + +++F Sbjct: 149 IDTPAAVKAAAPYIALIEDDESVRRSISTLLRSVGLGVASF 189 >UniRef50_A5N5X6 Transcriptional regulator n=5 Tax=Clostridium RepID=A5N5X6_CLOK5 Length = 225 Score = 97.1 bits (240), Expect = 6e-19, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 5/98 (5%) Query: 8 NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 ++ F P +L + V LT+ S+ L LL V+ + RVW + Sbjct: 132 SLTFDPLRGELQY---KENKVKLTSKESQLLELLARNKNQVLTKDQILDRVWGPDSDVEM 188 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 N + S +R+ R + +I T+ G+ + Sbjct: 189 NNNIEVYFSYLRKKLRRLNCN--VIIETIRGIGYCLKE 224 >UniRef50_B6FSP5 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FSP5_9CLOT Length = 226 Score = 97.1 bits (240), Expect = 6e-19, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 1/82 (1%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 V+ + + LT + L+L E ++ + + +W+E G V NTL I +R Sbjct: 143 VYKNNERIELTALEYKILALFFENKGRILTRGQILSGIWDESGNFVNNNTLTVYIKRLRE 202 Query: 81 GFRAVGDTTHSLIATVPRRGFK 102 +I TV G+K Sbjct: 203 KIEE-DPNAPKIIKTVRGMGYK 223 >UniRef50_C7BJM7 Putative uncharacterized protein n=1 Tax=Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949 RepID=C7BJM7_PHOAA Length = 178 Score = 97.1 bits (240), Expect = 6e-19, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 62/180 (34%), Gaps = 12/180 (6%) Query: 1 MY-WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVW 59 M ++I N+ F + S + L + + L L + +V+ + VW Sbjct: 1 MKDYVIGRNVFFNSLKCNISSTV---QEITLGSREASLLELFCKNPNEVINKTQIHESVW 57 Query: 60 EEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH-----NDINIQNHVI 114 + V +L + +S +R+ D T I T+P+ G+ ++ I+ +++ Sbjct: 58 GA--VIVNETSLTKAVSNLRKALSGFDDLTCE-IKTIPKEGYIFIIGEKLDNWCIKENLL 114 Query: 115 NSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLW 174 + V + +K ++ +I+ S F + + Sbjct: 115 PKEVSLSFSRQDKKMDVVSDELSLQNSISPAVSKSFLNLVYIVILSSLFSSVITTGLITF 174 >UniRef50_B1YN09 Transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=B1YN09_BURA4 Length = 481 Score = 97.1 bits (240), Expect = 6e-19, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 9/146 (6%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 E R L A V L + A LS+++ A +V++ + VW G+ V Sbjct: 27 GEFELNLGMRALY---KAGREVPLGSRAFDILSVIVLASGRIVSKDELMDTVWP--GVFV 81 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126 N ++ ++S +R+ LI TVP RG++ + Sbjct: 82 EENNIHVHLSAVRKALGDH----RQLIDTVPGRGYRFKVFDGMSAEPGRDVPTERHAPLF 137 Query: 127 PAIKVNAGYKESIGGAKNFNNKILKH 152 + + G + + Sbjct: 138 RNADTMTPPRHRLPGRRTLLGRATAL 163 >UniRef50_A6X2C4 Two component transcriptional regulator, winged helix family n=59 Tax=cellular organisms RepID=A6X2C4_OCHA4 Length = 255 Score = 97.1 bits (240), Expect = 6e-19, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 3/93 (3%) Query: 13 PEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLY 72 R + D+++ L R L L+ VV + VW + TN + Sbjct: 154 ELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW-DYHFDPQTNVID 212 Query: 73 QNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 +IS +R D L+ TV G+ + Sbjct: 213 VHISRLRSKIEKGFDGP--LLHTVRGAGYMLKA 243 >UniRef50_C6D9U3 Transcriptional regulator, CadC n=5 Tax=Pectobacterium RepID=C6D9U3_PECCP Length = 261 Score = 96.7 bits (239), Expect = 6e-19, Method: Composition-based stats. Identities = 45/267 (16%), Positives = 88/267 (32%), Gaps = 15/267 (5%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++IN+ I F L + + + L+ P SR LSLL+E +++ E Sbjct: 1 MVYLINELIIFNEGEGTLTWIERENEAISLSFPISRLLSLLIENQRVTLSRDFLLKEALE 60 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI-----N 115 + + N L +S++R+ R I T+P+ G + + + Sbjct: 61 KHALSPSINNLNNYLSLLRKVLREFDLADS--IVTIPKLGIVFNVESVVSYPEADRGGGE 118 Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWN 175 T KV + ++ I + IK+ + A L+ Sbjct: 119 KETSHQVVEENVEEKVEEDVYQEKKPFSIKHHAISEPIKTQQYTRCLLIWIAIVGVILFA 178 Query: 176 NNQPKPFFKDYKTVAEING-CHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPL 234 + F + +++G C D++ D ++ + Sbjct: 179 LDNANRFPYRHLVDVKMSGKCDLFYLYDSVGYPLPTDYENLCSENTLFFLS--KKIVISG 236 Query: 235 AKSSPGMIVMACNKNYNQHEVANCLTL 261 IV++C KN + C+T Sbjct: 237 MLDKKSEIVISCKKNGS-----GCVTY 258 >UniRef50_C8WHB5 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=C8WHB5_EGGLE Length = 223 Score = 96.7 bits (239), Expect = 7e-19, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 4/96 (4%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 ++E V A ++ LT R L L ++ +V ++ +W+ G V Sbjct: 129 GDVEIDAGT---ACVRKAGRDLALTALEYRLLLLFAQSRGKLVTREHVRNAIWDSAGEYV 185 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFK 102 NTL + +R LI TV G++ Sbjct: 186 SDNTLSVYVKRLRDKVED-DPAEPRLILTVRGLGYR 220 >UniRef50_D1C5Q5 Two component transcriptional regulator, winged helix family n=52 Tax=Bacteria RepID=D1C5Q5_SPHTD Length = 244 Score = 96.7 bits (239), Expect = 7e-19, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 6/109 (5%) Query: 8 NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 ++ R + D + LTT L L + V+ + RVW Sbjct: 142 DLTLDTTSR---FAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVIMERVWG-YDFPGE 197 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS 116 +N L +S +RR A G+ L+ TV G+ + + +S Sbjct: 198 SNVLEVYVSNLRRHLEAGGE--PRLLQTVRGAGYALRLPTEERAGSQSS 244 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 96.7 bits (239), Expect = 7e-19, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 2/81 (2%) Query: 25 DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84 D+ + L L+ L V ++ +VW V T+ +I +R Sbjct: 153 DVQLTLRPKEFDLLAYLASHPGQVFTREVLLGQVWG-YDEYVDARTVDVHIRRLRSKLSE 211 Query: 85 VGDTTHSLIATVPRRGFKIHN 105 + D +LI T G++ Sbjct: 212 I-DAESNLIQTEWGIGYRFIE 231 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 96.7 bits (239), Expect = 7e-19, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 4/96 (4%) Query: 9 IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68 + + + + + LT L +L VV+ ++ F VW ++ Sbjct: 140 LILDMDTHECTL---NEKKISLTPKEFSILWVLCSNRGRVVSSEELFHEVWGDKYFTNSN 196 Query: 69 NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104 NT+ +I +R + I TV G+KI Sbjct: 197 NTVMVHIRHLREKMHGSAEHPK-YIKTVWGVGYKIE 231 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 96.7 bits (239), Expect = 7e-19, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 2/86 (2%) Query: 19 ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78 V+ + LT L+ L +++++ FT+VW E NT+ +I + Sbjct: 145 TEVYVNGERLELTAKEVGLLACFLRNPNRILSKETLFTQVWGES-FFGSDNTVMVHIRRL 203 Query: 79 RRGFRAVGDTTHSLIATVPRRGFKIH 104 R + + I TV G+++ Sbjct: 204 REKV-EPNPSEPTYIKTVKGLGYRLT 228 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 96.7 bits (239), Expect = 7e-19, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 5/102 (4%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 D F P++ +LI V + + L E V+++ + +VW Sbjct: 137 DYFTFSPQNAELIV---GGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEKVWG-YPSYG 192 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108 NT+ +I +R + I TV G++ + Sbjct: 193 DNNTVMVHIRKLREKIER-DPSNPEYIVTVRGLGYRFIPNPE 233 >UniRef50_B5VUJ9 Two component transcriptional regulator, winged helix family n=1 Tax=Arthrospira maxima CS-328 RepID=B5VUJ9_SPIMA Length = 419 Score = 96.7 bits (239), Expect = 7e-19, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 5/147 (3%) Query: 11 FWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNT 70 P ++ + + + L L L + ++ R+W + T Sbjct: 150 LNPASGQITCC---GQILKVNRKEYQILELFLRHPRQMFSRDKIGDRLWTLDDELPTDAT 206 Query: 71 LYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIK 130 + +I IRR G +LI T RG+ + NI+ +D Sbjct: 207 INSHIRSIRRKLEQAGIN--NLIQTHYGRGYCLDPVYNIETQSAKGLSDPPKEMLDSMAA 264 Query: 131 VNAGYKESIGGAKNFNNKILKHIKSHL 157 + + KHI++ L Sbjct: 265 NIWQELMVANARLHGEIEHRKHIEARL 291 >UniRef50_A7B4Z9 Putative uncharacterized protein n=2 Tax=Ruminococcus RepID=A7B4Z9_RUMGN Length = 236 Score = 96.7 bits (239), Expect = 7e-19, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 5/98 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 N+ +P+ RK V + + + LT L LL++ V +++ + +VW + G Sbjct: 144 KNLSLYPQSRK---VEVSGIELPLTMHEYDILYLLIQNPQKVYSREHLYEQVW-KGGYYG 199 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104 NT+ ++S +R+ + D S I TV GFK+ Sbjct: 200 EDNTVNVHVSNLRKKIQKA-DKEESYIKTVWGIGFKLE 236 >UniRef50_A4C7M7 TolB domain protein n=1 Tax=Pseudoalteromonas tunicata D2 RepID=A4C7M7_9GAMM Length = 689 Score = 96.7 bits (239), Expect = 8e-19, Method: Composition-based stats. Identities = 29/254 (11%), Positives = 71/254 (27%), Gaps = 47/254 (18%) Query: 6 NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65 + + P ++ N + L L L P++V ++ VW+ G Sbjct: 9 IGSYQINPLENTVV---NQEQTNSLQPKFIEVLVFLASQHPNIVTREQIINAVWDGNG-Y 64 Query: 66 VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125 V L I +R+ T I T+ + G+++ + Q Sbjct: 65 VGEKALTNAIWHLRKTLVD-KPTQQEYIETIRKTGYRLLYQPHYQE-------------- 109 Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP---- 181 + + ES+ + + +K + + M +IG + + + P Sbjct: 110 -----LESQLAESLLIKQWYAKWPIKWLSAIAFMGVFILIGLFVGLFSRPSVAPTYGDPE 164 Query: 182 ------------------FFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKT-RILDSGI 222 + + + + + + + + + I Sbjct: 165 LLTQYPGRELFPAMSEDGRYLLFSWRKMDRDTDLYLKDLSQPSVPPKNITNSEFVESRPI 224 Query: 223 NCKKHPWLYFPLAK 236 + +Y+ K Sbjct: 225 WSSDNQTIYYYRKK 238 >UniRef50_B1XM84 Two-component response regulator n=8 Tax=Cyanobacteria RepID=B1XM84_SYNP2 Length = 241 Score = 96.7 bits (239), Expect = 8e-19, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 7/108 (6%) Query: 4 IINDNIEFWPEHRKLISV----HNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVW 59 + ++ R++ ++ + LT L L+ V+ ++ VW Sbjct: 137 LFFGDLILDLNTRQVWRSPGQSSDSPRPIELTVKEFELLKYLMSHPQQVLTREQILENVW 196 Query: 60 EEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI 107 E + +N + I +R A G LI TV G+ + D Sbjct: 197 GNE-FQGESNVIEVYIRYLRLKIEAKG--QKRLIQTVRGVGYVLKKDP 241 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 96.7 bits (239), Expect = 8e-19, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 6/98 (6%) Query: 8 NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 ++E + R++ + + LT L L V +++ + VW +G Sbjct: 133 DVEIDIKGRRVFAR---GEQISLTAKEFELLLFLANHPGRVFTKEELYAAVWNGDGF--D 187 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 + T+ ++ +R + G I TV G+K Sbjct: 188 SRTVTVHVKNVRHKLKD-GTKHPKYIETVWGVGYKFIG 224 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 96.3 bits (238), Expect = 9e-19, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 5/101 (4%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 ++ P R+ A + LT L LL V +Q+ VW Sbjct: 134 GDLVLHPRQRR---AEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDLVWG-YDFAG 189 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI 107 T+ ++ IR + + T G+ + + Sbjct: 190 DERTVDVHVRRIREKLEE-DPSRPRYLRTKWGVGYYLEAEP 229 >UniRef50_C0A842 Response regulator receiver protein n=5 Tax=Bacteria RepID=C0A842_9BACT Length = 263 Score = 96.3 bits (238), Expect = 9e-19, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 1/115 (0%) Query: 15 HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM-RVPTNTLYQ 73 + + V A + LT LS L + V++ +W E N + Sbjct: 143 NLETRLVTRAGRTIDLTPREFDLLSYLSLHQGEAVSRDQLAREIWRENNRATPIDNVIDV 202 Query: 74 NISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPA 128 +I+ +RR L+ T+ G+ + + + S +A P Sbjct: 203 HIARLRRKIDEASPGAEKLLHTLRGLGYMLRSSASSAVSSSASPRAPSETSANPE 257 >UniRef50_B7GTW3 Response regulator receiver protein n=6 Tax=Bifidobacteriaceae RepID=B7GTW3_BIFLI Length = 266 Score = 96.3 bits (238), Expect = 9e-19, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 7/100 (7%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 ++ + L L L++ V + VW Sbjct: 141 GDLIVDTNGYT---ASLHGRPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWG-YDYYG 196 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 T T+ +I +R G LI TV G++ Sbjct: 197 GTRTVDVHIRRLRAKL---GGEYEHLIGTVRNVGYRFDPP 233 >UniRef50_Q1MMK4 Putative transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MMK4_RHIL3 Length = 954 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 9/155 (5%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + F P + L+ ++ + + + A L L+ VV++ + F W + V Sbjct: 15 GDCRFIPARQLLLHR---EVPIRVGSRAIDLLHALVRRPGIVVSKDELFRAAWPN--VFV 69 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126 + L NI+++RR V + + IATVP RG++ + + ++ + Sbjct: 70 DESNLKVNIAVLRRALAQV-EPDLTCIATVPGRGYRFVAPLRVLGVADEAA---LSDAVR 125 Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLS 161 IG + + ++ L+ + Sbjct: 126 GISGELPAPPALIGRDEAMADLAGALAETRLLTIV 160 >UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JD22_9BACT Length = 239 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 6/100 (6%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 ++ R+ V V LTT L L+ + V+ + VW Sbjct: 146 GDLVVNLSTRE---VRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG-YDFDP 201 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 TN + + +R+ A D LI TV G+++ + Sbjct: 202 STNVVDVCVQRLRKKVDAGHDV--HLIETVRGAGYRMRKE 239 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 5/105 (4%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 I+ +E E + V D V LT L L E V ++ ++W Sbjct: 160 KKIVAKGLEIDVERYE---VKVHDQKVSLTPLEFELLRFLAENEGKVFSRDVLLDKLWG- 215 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 T T+ +I +R + I TV +G+K + Sbjct: 216 YDYYGDTRTVDVHIRRLRTKIEE-DPSNPKYIITVRGKGYKFRDP 259 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 7/98 (7%) Query: 8 NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67 ++ + L H D + LT R LSL + V +Q F W EE Sbjct: 154 DLTLDLDACVL---HRGDEPLDLTPVEFRMLSLFMSHPGRVFTKQQIFEEGWGEE-YVAS 209 Query: 68 TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 N + IS +R + IATV G+++ Sbjct: 210 GNNVMVGISKLRAKLSD---DPGAYIATVRGLGYRMEA 244 >UniRef50_D0MIF5 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIF5_RHOM4 Length = 231 Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 3/93 (3%) Query: 21 VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80 V + + L L L +V+++ +VW + V NT+ +S +R+ Sbjct: 142 VRVGEYVLPLRPKEYDLLRFLARHPGEVLSRTRIAEQVWGDP-FYVSDNTIDVTVSGLRQ 200 Query: 81 GFRAVGDTTHSLIATVPRRGFKIHNDINIQNHV 113 I TV G+ + + + Sbjct: 201 KLSEATPALQ--IETVRGVGYALRLEPSATETP 231 >UniRef50_C7MMC5 Response regulator with CheY-like receiver domain protein and winged-helix DNA-binding domain protein n=2 Tax=Bacteria RepID=C7MMC5_CRYCD Length = 271 Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 3/136 (2%) Query: 13 PEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLY 72 + V A LT R LSLL+ +V ++ +W + NTL Sbjct: 139 SLDAECCRVSFAGKQADLTKNELRILSLLMRNAGKIVPRERIQEELW-NSDEFIDDNTLT 197 Query: 73 QNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVN 132 N+S +R +G I T G+ + + S+ + +A Sbjct: 198 VNVSHLRHTLSTIG--ADDFIRTKRGIGYSFEVAPSESSKSSYSTELSQLSHADETGCQA 255 Query: 133 AGYKESIGGAKNFNNK 148 YK G + + Sbjct: 256 MDYKSPQSGCSHLDAS 271 >UniRef50_B9L1T3 Phosphate regulatory protein n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1T3_THERP Length = 253 Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 7/106 (6%) Query: 9 IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68 + F EHR + V L L+ L+E V +Q+ VW ++ V Sbjct: 151 VIFRDEHRVVYR----GREVHLAPREFALLTALVERAGRVCTRQELLDLVWGQD--VVDL 204 Query: 69 NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI 114 + +I IR +LI TV G++ ++ + Sbjct: 205 RNVDVHIHRIREALG-GEPDGSNLIRTVHGIGYRFVPELAAMDETN 249 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 6/101 (5%) Query: 3 WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62 ++ D++ + R+ V D V LT L +L+ V+ ++ + VW Sbjct: 132 FLTYDDLRVNEKTRE---VRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSVWG-F 187 Query: 63 GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103 TN + I IR+ LI T+ G+ I Sbjct: 188 DYIGDTNVVDVYIRYIRKKLDY--PYEKQLIHTIRGVGYAI 226 >UniRef50_C6HXQ3 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HXQ3_9BACT Length = 269 Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 5/102 (4%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + + +++ + + +T R L L+ V +++ + +W E V Sbjct: 173 GELIVDTDRHEVV---WQEKRIQVTPLEFRILVHLVRDPGKVYPREELMSLLWGEH-WEV 228 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108 + L +I +R+ + + I TV G++I ++ Sbjct: 229 EDHNLSVHIHGLRKKLARP-EDDRTPIETVRGVGYRIRETLS 269 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 5/107 (4%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 + F P+ +LI V + + L + V+++ + +VW Sbjct: 140 ERFIFHPDFAELIV---DGETVSCSAQLLQLLQYFCDHPNRVLSKDQIYEKVWGVPS-YG 195 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHV 113 +NT+ +I +R ++ I T+ G+K + + Sbjct: 196 DSNTVMVHIRKLREKIEK-DPSSPEYIVTIRGLGYKFVPNPARKESE 241 >UniRef50_B8ESP8 Transcriptional regulator domain protein n=4 Tax=Rhizobiales RepID=B8ESP8_METSB Length = 522 Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 9/150 (6%) Query: 1 MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60 M ++ D E +L + + + L L+E+ V +++ RVW Sbjct: 1 MIYLFED-FELDTARVEL---RTNGVAIAIEPQVFALLCFLVESRDRVATKEEIVARVW- 55 Query: 61 EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120 G + + + I RR G LI T+ GF+ D+ + I S Sbjct: 56 -NGRVISDSAIASRIKSARRALGDDGGAQR-LIRTIHGIGFRFVADVRLAATRIESIA-- 111 Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKIL 150 T P + + S ++L Sbjct: 112 PTAETAPDTDRSQAVETSRPSIAVLPFRLL 141 >UniRef50_Q1MK68 Putative adenylate cyclase n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1MK68_RHIL3 Length = 522 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 17/169 (10%) Query: 4 IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63 I+ND + E L + L A L L++ +V++ + VW G Sbjct: 25 ILNDKVVVDLEGETLRL--ENGDAIALRPQAFAVLRHLVQNANRLVSKAELLEAVWG--G 80 Query: 64 MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123 V ++L Q I IRR GD ++++ATV RRG+++ + +D Sbjct: 81 AAVTDDSLVQCIHEIRRAL---GDERYAVLATVSRRGYRLSLE----------RSDESAL 127 Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYW 172 P + F + +++ I ++L + + A ++ + Sbjct: 128 GGPSIAVLPFATMSGGEPNDYFADGLVEDIITNLSKIPGLFVIARNSSF 176 >UniRef50_B1KA17 Transcriptional regulator, winged helix family n=8 Tax=Burkholderia RepID=B1KA17_BURCC Length = 973 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 9/152 (5%) Query: 6 NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65 + E R + ++ + A L +L A VV++ D VW G+ Sbjct: 4 IGTLSVDFEQRDI---RRHGASLRIGARALDILEVLHRASGSVVSKDDIMDAVWP--GLI 58 Query: 66 VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125 V N L +++ +R+ A + LI TVP RG+ + + ++ + Sbjct: 59 VEENRLQVHVATLRKALGA----SRDLIKTVPGRGYLLVASASPGPDLVPAGEAPAVAVP 114 Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKSHL 157 P + S+ + + I L Sbjct: 115 PAVAALPDACALSLLPPLVGRDAEIAQIVDML 146 >UniRef50_B8FQS3 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8FQS3_DESHD Length = 226 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 8/99 (8%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 I P V V L L LL+E +V ++ R+W Sbjct: 134 GGISLDPYRGT---VSVDGRVVELAPKEYALLKLLMENAGKIVTRETLLARIWG-YDFSG 189 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 + +I +R+ + I TV + G+++ Sbjct: 190 NDRVVDNHIKKLRQTLGKGAEQ----IKTVVKSGYRLEE 224 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 8/100 (8%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 ++ P L V + LT L LLL ++ +W + Sbjct: 144 GDLVLDPH---LHIVALRQQELDLTPTEFAILDLLLRNPGRAFSRNYLLDTIWG-QSYVG 199 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 ++ + +R+ GD I TV G+++ + Sbjct: 200 GDRSVDNAMLRLRKKLADFGDA----IETVWGLGYRLQAE 235 >UniRef50_Q2C4S0 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34 RepID=Q2C4S0_9GAMM Length = 262 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 53/265 (20%), Positives = 95/265 (35%), Gaps = 22/265 (8%) Query: 2 YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61 + I N+ F L N + VL ++ L +LL ++V ++ W Sbjct: 4 NYKI-KNVTFCSNRAVL---SNGEKQQVLNFTEAKLLEILLSKANEIVLKETLKEFAW-- 57 Query: 62 EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN--IQNHVINSSTD 119 + V ++L ++I+ +RR A LI T+PR G+K + + N + Sbjct: 58 QHTVVTDSSLTKSIAKLRRAL-AFFFEDEELIITIPRVGYKFVSHDVEPVANVDTSIEES 116 Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179 T + YKE ++ +K+L + LI S F + L Sbjct: 117 LITKDDLTGNVQLTDYKEKNKFKQSVCSKVLLTLSILLIAGSLF-----NFLRLIPTKNE 171 Query: 180 KPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINC-------KKHPWLYF 232 + + Y A +G F+ T T G++ K + NC H + + Sbjct: 172 QVIAEGYHITALTSG-GFSHTVITRKGIELDPKLSFLLSQQKCNCLFFVDKISDHFNISY 230 Query: 233 PLAKSSPGMIVMACNKNYNQHEVAN 257 K++ G + KN + N Sbjct: 231 FDPKNAKGRSFILDEKNLVEKLRVN 255 >UniRef50_B9YAL6 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YAL6_9FIRM Length = 269 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 6/96 (6%) Query: 10 EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69 F L LT + L LLLE VV+++ ++W V N Sbjct: 180 VFNLADASL---SKDGRQCELTKNEFKILQLLLENKNKVVSREKIMLKLW-NNDCFVDEN 235 Query: 70 TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 TL N++ +RR +G I T G+++H Sbjct: 236 TLTVNVNRLRRKMEQLGI--DDCIETRKGLGYQLHA 269 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 5/97 (5%) Query: 9 IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68 +E R++ + V LT L+LL V +++ +W E Sbjct: 142 LEIDLLRRRVTAR---GEQVELTAREFEVLALLASNPGRVYSREQIMDHLWGGE-FFGEP 197 Query: 69 NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105 + +I +R+ I TV G++ Sbjct: 198 RSADVHIQHLRQKIE-PDPKNPRYIQTVRGMGYRFAE 233 >UniRef50_A5UQY1 Two component transcriptional regulator, winged helix family n=6 Tax=Chloroflexi (class) RepID=A5UQY1_ROSS1 Length = 227 Score = 95.2 bits (235), Expect = 2e-18, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 6/100 (6%) Query: 7 DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66 ++ H + LT L L+ +++Q VW V Sbjct: 132 GDLVLDLRHHT---ARRGTRPLDLTPTEWNLLEYLMRNAGQALSRQQILDHVW-SYDHDV 187 Query: 67 PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106 + I+ +RR A G+ I TV G+++ Sbjct: 188 QPQMVDVYIAYLRRKLNASGE--RDPIVTVRGVGYRLEAS 225 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.130 0.356 Lambda K H 0.267 0.0400 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,376,982,360 Number of Sequences: 3077464 Number of extensions: 54268993 Number of successful extensions: 179347 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2876 Number of HSP's successfully gapped in prelim test: 2671 Number of HSP's that attempted gapping in prelim test: 170216 Number of HSP's gapped (non-prelim): 5664 length of query: 269 length of database: 1,040,396,356 effective HSP length: 126 effective length of query: 143 effective length of database: 652,635,892 effective search space: 93326932556 effective search space used: 93326932556 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.5 bits) S2: 92 (40.1 bits)