Phyre 2 alignment of Q46942 with d1sfxa_

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Job Description | Q46942
Confidence | 20.97% | Date | Thu Jan 5 12:36:01 GMT 2012
Rank | 87 | Aligned Residues | 44
% Identity | 14% | Template | d1sfxa_
SCOP info | DNA/RNA-binding 3-helical bundle | "Winged helix" DNA-binding domain | TrmB-like
Resolution | 1.55

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | L | T | T | P | A | S | R | C | L | S | L | L | L | E | A | F | P | D | V | V | A | Q | Q | D | F | F | T | R | V | W | E | E | E | G | M | R | V | P | T | N | T | L | Y | Q | N | I | S | I | I | R | R | G
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | F | K | P | S | D | V | R | I | Y | S | L | L | L | E | R | G | G | . | . | X | R | V | S | E | I | A | R | E | L | D | . | . | . | . | . | . | L | S | A | R | F | V | R | D | R | L | K | V | L | L | K | R
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | B |  |  |  |  |  |  |  |  |  | T | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 17 | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . |  |  | . | . | . | . | . | . | 40 | . | . | . | . |  |  |  |  |  |  | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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