BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (269 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q46942 Uncharacterized protein yqeI n=36 Tax=Enterobact...   563   e-159
UniRef50_B7LP57 Putative regulatory protein n=2 Tax=Enterobacter...   270   3e-71
UniRef50_A6T554 Putative sensory transducer n=1 Tax=Klebsiella p...   240   3e-62
UniRef50_B4SXG5 Transcriptional regulatory protein, C n=31 Tax=S...   215   1e-54
UniRef50_C6UPQ2 Predicted protein n=12 Tax=Escherichia coli O157...   118   2e-25
UniRef50_UPI000182700F transcriptional regulatory protein, C n=1...   102   1e-20
UniRef50_UPI0001826357 putative regulatory protein n=1 Tax=Enter...   100   4e-20
UniRef50_C4SZK7 Putative uncharacterized protein n=1 Tax=Yersini...    89   1e-16
UniRef50_C4UHM9 Transcriptional regulatory protein, C n=1 Tax=Ye...    87   5e-16
UniRef50_C4SC03 Transcriptional regulatory protein n=2 Tax=Yersi...    83   9e-15
UniRef50_C4SUH9 Putative uncharacterized protein n=1 Tax=Yersini...    77   5e-13
UniRef50_B2VGK3 Putative transcriptional regulator n=1 Tax=Erwin...    72   2e-11
UniRef50_C4UJG3 Transcriptional regulator n=1 Tax=Yersinia rucke...    72   3e-11
UniRef50_Q7VR33 Transcriptional regulatory protein, C terminal d...    70   9e-11
UniRef50_Q2NSQ9 Putative uncharacterized protein n=1 Tax=Sodalis...    69   2e-10
UniRef50_B2VGZ0 Transcriptional regulatory protein n=1 Tax=Erwin...    68   3e-10
UniRef50_D0YIE0 Transcriptional regulator, CadC n=6 Tax=Klebsiel...    64   4e-09
UniRef50_A8GBW4 Transcriptional regulator, CadC n=1 Tax=Serratia...    61   4e-08
UniRef50_C4T4W9 DNA-binding winged-HTH domains n=1 Tax=Yersinia ...    61   4e-08
UniRef50_C4SV61 Putative uncharacterized protein n=1 Tax=Yersini...    60   6e-08
UniRef50_B2VCE9 Probable transcriptional regulator n=1 Tax=Erwin...    58   4e-07
UniRef50_C1MAT2 Predicted protein n=2 Tax=Citrobacter RepID=C1MA...    57   5e-07
UniRef50_Q1Z5R8 Transcription activator ToxR n=4 Tax=Photobacter...    56   2e-06
UniRef50_B1JQB0 Transcriptional regulator, CadC n=18 Tax=Yersini...    56   2e-06
UniRef50_C7BJK4 Putative membrane protein n=1 Tax=Photorhabdus a...    55   2e-06
UniRef50_D2TAS4 Cholera toxin transcriptional activator n=2 Tax=...    55   2e-06
UniRef50_UPI0001C33D1D hypothetical protein CATC2_20487 n=1 Tax=...    55   3e-06
UniRef50_C4SF84 DNA-binding winged-HTH domains n=1 Tax=Yersinia ...    55   3e-06
UniRef50_D2TQU5 Putative transcriptional regulator n=2 Tax=Enter...    55   4e-06
UniRef50_D2A9T6 Transcriptional regulator, CadC n=3 Tax=Shigella...    54   4e-06
UniRef50_B4TIC0 Putative uncharacterized protein n=33 Tax=Entero...    54   5e-06
UniRef50_B4EUN0 Putative membrane protein n=2 Tax=Proteus mirabi...    53   1e-05
UniRef50_D1P736 Putative transcriptional regulator with C-, effe...    53   1e-05
UniRef50_UPI00018266EF transcriptional regulator, CadC n=1 Tax=E...    52   1e-05
UniRef50_B5FBZ3 Toxin transcriptional activator ToxR n=3 Tax=Vib...    52   1e-05
UniRef50_P15795 Cholera toxin transcriptional activator n=121 Ta...    52   1e-05
UniRef50_A1JPG4 Possible reguatory protein n=5 Tax=Yersinia RepI...    52   2e-05
UniRef50_B2D6Y9 ToxR n=2 Tax=Vibrio cholerae RepID=B2D6Y9_VIBCH        52   2e-05
UniRef50_D2YQP0 Transmembrane regulatory protein ToxR n=7 Tax=Vi...    52   2e-05
UniRef50_B2Q575 Putative uncharacterized protein n=1 Tax=Provide...    52   2e-05
UniRef50_A7MIL4 Putative uncharacterized protein n=2 Tax=Cronoba...    52   2e-05
UniRef50_A8GJD8 Transcriptional regulator, CadC n=1 Tax=Serratia...    52   3e-05
UniRef50_C1MDX4 Putative uncharacterized protein n=1 Tax=Citroba...    51   4e-05
UniRef50_C4T6D4 DNA-binding winged-HTH domains n=1 Tax=Yersinia ...    51   4e-05
UniRef50_Q9RHQ9 Transmembrane regulatory protein ToxR n=2 Tax=Gr...    50   7e-05
UniRef50_A8GL29 Transcriptional regulator, CadC n=2 Tax=Serratia...    50   8e-05
UniRef50_Q8D287 YqeI protein n=1 Tax=Wigglesworthia glossinidia ...    50   1e-04
UniRef50_C4UIA8 Possible regulatory protein n=1 Tax=Yersinia ruc...    49   2e-04
UniRef50_D2A7F9 Membrane protein n=2 Tax=Shigella flexneri RepID...    49   2e-04
UniRef50_A8AP73 Putative uncharacterized protein n=1 Tax=Citroba...    49   2e-04
UniRef50_D1RR55 Transcriptional regulator, CadC n=1 Tax=Serratia...    48   3e-04
UniRef50_A6AKR5 Transcriptional regulatory protein, C n=3 Tax=Vi...    48   3e-04
UniRef50_A8GFV8 Transcriptional regulator, CadC n=1 Tax=Serratia...    48   3e-04
UniRef50_A8GL31 Transcriptional regulator, CadC n=1 Tax=Serratia...    48   4e-04
UniRef50_D0ZEM9 Putative uncharacterized protein n=1 Tax=Edwards...    47   5e-04
UniRef50_C4SAM2 Possible regulatory protein n=1 Tax=Yersinia mol...    47   7e-04
UniRef50_D0YZ11 Transcriptional activator ToxR n=1 Tax=Photobact...    47   7e-04
UniRef50_B1J1E8 Two component transcriptional regulator, LuxR fa...    47   8e-04
UniRef50_B5F706 Putative uncharacterized protein n=20 Tax=Salmon...    47   0.001
UniRef50_C5ZZN9 Putative uncharacterized protein n=1 Tax=Escheri...    46   0.002
UniRef50_A3UR88 Putative transcriptional activator ToxR n=3 Tax=...    45   0.003
UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax...    44   0.005
UniRef50_A9MR60 Putative uncharacterized protein n=11 Tax=Salmon...    44   0.005
UniRef50_B2VID6 Putative uncharacterized protein n=1 Tax=Erwinia...    44   0.005
UniRef50_B1HZ29 Sensory transduction protein n=3 Tax=Bacillaceae...    44   0.006
UniRef50_C2NAF5 Two-component response regulator n=2 Tax=Bacillu...    44   0.006
UniRef50_Q15PB9 Lysine decarboxylase transcriptional regulator, ...    44   0.008
UniRef50_B9TBN5 Putative uncharacterized protein n=1 Tax=Ricinus...    43   0.009
UniRef50_B3INB4 Transcriptional regulatory protein, C n=2 Tax=En...    43   0.011
UniRef50_C9PH99 Putative uncharacterized protein n=1 Tax=Vibrio ...    43   0.013
UniRef50_D1RYQ0 Transcriptional regulator, CadC n=1 Tax=Serratia...    42   0.015
UniRef50_C4K826 Putative regulatory membrane protein n=1 Tax=Can...    42   0.017
UniRef50_B6XAC7 Putative uncharacterized protein n=2 Tax=Provide...    42   0.030
UniRef50_Q2S7R1 DNA-binding winged-HTH domains n=1 Tax=Hahella c...    41   0.037

>UniRef50_Q46942 Uncharacterized protein yqeI n=36 Tax=Enterobacteriaceae
           RepID=YQEI_ECOLI
          Length = 269

 Score =  563 bits (1452), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 269/269 (100%), Positives = 269/269 (100%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE
Sbjct: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA
Sbjct: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
           HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK
Sbjct: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240
           PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG
Sbjct: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240

Query: 241 MIVMACNKNYNQHEVANCLTLSYREVNRD 269
           MIVMACNKNYNQHEVANCLTLSYREVNRD
Sbjct: 241 MIVMACNKNYNQHEVANCLTLSYREVNRD 269


>UniRef50_B7LP57 Putative regulatory protein n=2 Tax=Enterobacteriaceae
           RepID=B7LP57_ESCF3
          Length = 307

 Score =  270 bits (691), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 128/268 (47%), Positives = 176/268 (65%), Gaps = 7/268 (2%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           MYWIIN+ IEF P  +KLIS  N +LNVVLT+PASRCL LLLEA PDVV+QQ+ F +VWE
Sbjct: 40  MYWIINEFIEFRPASKKLISRRNPELNVVLTSPASRCLLLLLEASPDVVSQQELFKKVWE 99

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           +EGM VPTNTLYQNISI+RRG +AVG+T  +LIAT+PR+GFKI   + I    +  ++D 
Sbjct: 100 DEGMYVPTNTLYQNISIVRRGLKAVGETEQTLIATIPRKGFKIEQGVKI----VRMASDE 155

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNN---KILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177
                    +     +E +            ++  +    IML AF++GA   ++ W++ 
Sbjct: 156 LFPEEEQEEEQTGNAEELLLPVNEHQQPRISLMSRLSLVFIMLLAFIVGATGMHFYWHSG 215

Query: 178 QPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKS 237
           +  PFF DYK + + NGCHF V +D+ DG   F + KT I  +G++CKK+PW+Y PL+K+
Sbjct: 216 ETTPFFADYKLLEQENGCHFYVKDDSHDGDNNFARIKTLITRTGLDCKKYPWVYLPLSKT 275

Query: 238 SPGMIVMACNKNYNQHEVANCLTLSYRE 265
            PG+ V+ C K+Y  H V  C+TLS+RE
Sbjct: 276 DPGLAVLVCKKDYLVHSVPGCMTLSFRE 303


>UniRef50_A6T554 Putative sensory transducer n=1 Tax=Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578 RepID=A6T554_KLEP7
          Length = 274

 Score =  240 bits (613), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 120/281 (42%), Positives = 173/281 (61%), Gaps = 25/281 (8%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           MYWIIN NIEFWPE+++LIS+ N   +V LT PAS CL LLLEA P++V+QQ FF +VWE
Sbjct: 1   MYWIINKNIEFWPENKRLISLKNPAQSVTLTAPASHCLVLLLEATPELVSQQVFFKKVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ---------- 110
           +EG+ VP NTLYQNISI+RRG R VG+T +S++ TVPR+GF I+ ++N++          
Sbjct: 61  DEGILVPANTLYQNISIVRRGLRDVGETDNSIVVTVPRKGFHINPNVNVERMDKKPLNSE 120

Query: 111 --NHVINSSTDAHTHNAP---PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVI 165
             N +   S D      P   P   V    +++IG              + LIML + + 
Sbjct: 121 SYNDITIISQDDVAEKNPTTEPGDIVQTATRKNIGAKAT----------TFLIMLLSLLA 170

Query: 166 GAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCK 225
           G  S +++W+ +  KPFF  Y  V    GCHF   +D    + +F+ YK+ I  SG++CK
Sbjct: 171 GCLSFHYIWHFHDEKPFFSSYTLVENDRGCHFYTKDDNHAKVDKFNYYKSLIFKSGLDCK 230

Query: 226 KHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSYREV 266
           K+P++YF +++ SPG IV  C K+Y++   A C+TLS+R +
Sbjct: 231 KYPFVYFSMSQMSPGFIVFICRKSYSEKVSAGCVTLSFRGI 271


>UniRef50_B4SXG5 Transcriptional regulatory protein, C n=31 Tax=Salmonella enterica
           RepID=B4SXG5_SALNS
          Length = 254

 Score =  215 bits (548), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 109/267 (40%), Positives = 143/267 (53%), Gaps = 15/267 (5%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M WIINDNIEF PE  +L S+   DLN++LTTPASRCL LLLE  P VV+QQ FF +VWE
Sbjct: 1   MLWIINDNIEFNPEMNRLASLSRPDLNIILTTPASRCLRLLLENAPSVVSQQTFFQKVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E+GM V  NTLYQNISIIRRG R VG+   +LI TVPRRGF+I   ++I     + +   
Sbjct: 61  EDGMVVSANTLYQNISIIRRGLRTVGENEDTLIITVPRRGFQIEPGVSIMTIRKDFAQAI 120

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                 P                  + +  KH    L M   F +G       W     K
Sbjct: 121 EKKGETPP---------------RMSGRWFKHYVPVLWMTGTFAVGILLGTISWQTVPDK 165

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240
            F+  Y  V    GCHF    + I+    F  YK+ IL +G++C+K+PW+YFP +  +P 
Sbjct: 166 DFYDRYTLVETTQGCHFFSRNEDIESGSRFASYKSMILKTGMDCQKYPWVYFPSSSRTPA 225

Query: 241 MIVMACNKNYNQHEVANCLTLSYREVN 267
           +  + C + Y       C+TL +R V 
Sbjct: 226 VTALICQQPYKTRGDTGCVTLFFRGVT 252


>UniRef50_C6UPQ2 Predicted protein n=12 Tax=Escherichia coli O157:H7
           RepID=C6UPQ2_ECO5T
          Length = 270

 Score =  118 bits (296), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 133/276 (48%), Gaps = 20/276 (7%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIND + F     KL S+  ++  V+LT PA +CL LLL+    VV+   FF +VW 
Sbjct: 1   MIYIINDEVRFNSSSNKLTSLLTSE-EVILTYPAGKCLKLLLDNAYSVVSHNQFFEKVWS 59

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTT--HSLIATVPRRGFKIHNDINIQNHVINSST 118
           +    V TNTLYQNIS+IRR FR +   T  + +I TVPR+GFKI+ +I+I   V++++ 
Sbjct: 60  DSSADVATNTLYQNISMIRRSFREISSATIFNDVIRTVPRKGFKINEEISIT--VLDNN- 116

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFV---IGAYSAYWLWN 175
             H  N     + N  + E+I   KN   K +   K+ L+++  F    I   S+Y+   
Sbjct: 117 --HNENESVESEENGTHTENIN--KNHIAKGIFTTKNTLLIVCFFAAWGIVYISSYFFDM 172

Query: 176 NNQPKPF-------FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHP 228
             Q K         F +Y       GC +       + +        ++    INCK HP
Sbjct: 173 AFQSKSHTIKKIDAFSNYAQHPTQEGCSYFYDNKYFNSVDMLSPIIEKLQKMEINCKIHP 232

Query: 229 WLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSYR 264
           ++Y     S  G     C++  N     NC +L Y+
Sbjct: 233 YIYIATNDSMSGFYAFTCSQMLNSESPNNCNSLYYK 268


>UniRef50_UPI000182700F transcriptional regulatory protein, C n=1 Tax=Enterobacter
           cancerogenus ATCC 35316 RepID=UPI000182700F
          Length = 269

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 114/266 (42%), Gaps = 28/266 (10%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
           ++IIN+ +EF P    L  ++N D  VVL +PA RCL LL+E    +V QQDF   VW+ 
Sbjct: 4   HYIINNIVEFHPAASTLRDINNPDRVVVLNSPAGRCLLLLIERAGSIVTQQDFLDIVWQR 63

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
            GM V  NT YQNISI+R+G + +G     ++ T+PR G  + +D  I   VI       
Sbjct: 64  RGMLVSPNTYYQNISILRKGLKKIGFDVDPIV-TIPRIGLTLASDTQI---VIKEPATPA 119

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLW------- 174
              A P   V     +     +   N + +  +   +  + ++ G      +        
Sbjct: 120 PEMAVPETAVQQDTADLRLNEEPGENALPE--RDSRLARARWLAGMLMILLVLLMSVGII 177

Query: 175 --NNNQPKPFFKDYKTVAEINGCH------FNVTEDTIDGLKEFDKYKTRILDSGINCKK 226
             +N +   F +DY     I  CH           +    L   D++K         C  
Sbjct: 178 GHSNARENRFIEDYHFATTIGACHVWLAKGIQTQSERAKALAYVDQFKA-------ECAD 230

Query: 227 HPWLYFPLAKSSPGMIVMACNKNYNQ 252
           +PW+Y    +  P   V+ C+K+  +
Sbjct: 231 YPWIYISWYELLPRASVIRCDKSMKE 256


>UniRef50_UPI0001826357 putative regulatory protein n=1 Tax=Enterobacter cancerogenus ATCC
           35316 RepID=UPI0001826357
          Length = 265

 Score =  100 bits (250), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 126/267 (47%), Gaps = 16/267 (5%)

Query: 3   WIINDNIEFWPEHRKLISVHN-ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
           ++IND++ F P+ R+L       D  V+L  P S CL LLLE   +V+ Q+  F+ VWE+
Sbjct: 5   FLINDSVLFEPDKRRLCPRDGYPDRAVLLHGPVSECLLLLLEHNGEVLTQRYLFSAVWEK 64

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---IQNHVINSST 118
           +G  V TN LYQ I+ IR+  ++VG    +++ TVP+ GFK    +    ++  ++  +T
Sbjct: 65  QGAIVTTNALYQTIASIRKALKSVG-LAENIVQTVPKEGFKAVAALQSGTLEEFILPVAT 123

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178
            A     P   K              F++KI   I + L ++S FV+       L   + 
Sbjct: 124 -APKDGQPEEEKAYLPAPVVRPRKSLFSSKIAYGIAALLFLVSCFVL----YQQLKPGDA 178

Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSS 238
           P   F DY  +  + GC  +V     D ++  +K+ + +    + C     +Y  L    
Sbjct: 179 P---FADYHFIGNVEGC--DVYSSLHDKMQSQNKFTSLVKRYPVQCSAGGRVYITLNHYQ 233

Query: 239 PGMIVMACNKNYNQHEVANCLTLSYRE 265
            G  V+ C+K  +    A C ++ YRE
Sbjct: 234 QGTSVIVCDKQADLAG-AQCESILYRE 259


>UniRef50_C4SZK7 Putative uncharacterized protein n=1 Tax=Yersinia intermedia ATCC
           29909 RepID=C4SZK7_YERIN
          Length = 247

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 24/232 (10%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           IIN  + +   +  + +++  + +V L  P + CL +LL+ +P+V+ Q  FF + WE++G
Sbjct: 6   IINKIVAYDYNNAIIYNINKPEKSVSLYAPTNECLYILLDQYPNVIPQNYFFEQAWEKQG 65

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
           +    N  YQ+IS+IRR F  VG     +I T+PRRG  +  D+ I           H  
Sbjct: 66  LTTTNNNFYQHISMIRRAFEVVG-LNGDIILTLPRRGLSLSKDLEI----------THEE 114

Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP-KPF 182
                 K      E+   A   NN +L+   S  +++S  +I  +S   L+N   P +  
Sbjct: 115 KKRQDKKEEIVIDETSNNA-TINNSMLR--ASLWVVVSILIITLFSI-LLYNKKSPYEKS 170

Query: 183 FKDYKTVAEINGCH-FNVTED-TIDGLKEFDKYKTRILDSGINCKKHPWLYF 232
            ++Y  V +I  CH F+++E   +  +KE  K      +  INC K   LY+
Sbjct: 171 IENYNHVEDIELCHLFSLSEGYDVSNVKEIIK------NEKINCNKVKNLYY 216


>UniRef50_C4UHM9 Transcriptional regulatory protein, C n=1 Tax=Yersinia ruckeri ATCC
           29473 RepID=C4UHM9_YERRU
          Length = 300

 Score = 87.0 bits (214), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 128/271 (47%), Gaps = 48/271 (17%)

Query: 18  LISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISI 77
           L +++N    V LTTPA+ CL ++     +VV+Q+ FFT VWE  G  + +NT YQNISI
Sbjct: 20  LYNINNKSEMVFLTTPANHCLLIITNNRHEVVSQRTFFTEVWENHGAPINSNTFYQNISI 79

Query: 78  IRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNH--VINSSTDAHTHNAPPAIKV---- 131
           IRR F+ +G  T  +I TVPRRG +I ++I I +   +   + ++    A  + +V    
Sbjct: 80  IRRAFKQLG-LTEDVIVTVPRRGVRIGSNIEISSFPPISGQTPESMVLIAKESAEVSKQD 138

Query: 132 --NAGYKESIGGAKNF----------------------NNKILKHIKS---------HLI 158
             +  Y+E +   KNF                      N+  L+ +K+         H++
Sbjct: 139 NEDTQYQEDV---KNFTHNHSDNRIVEERGDFYYSGSNNSSFLRLVKTIPSIWDVNYHIV 195

Query: 159 MLSAFV-IGAYSAYWLWNNNQPKPFFKDYKTVAEINGCH-FNVTEDTIDGLKEFDKYKTR 216
           +   F+ I A+SA    +    K  F DYK+   +  C  F+     I+  K  +     
Sbjct: 196 IAFIFLAIMAFSASVFDSYFYSKSRFYDYKSSFLLEQCDVFSQISRDIEIRKSVEH---M 252

Query: 217 ILDSGINCKKHPWLYFPLAKSSPGMIVMACN 247
           I  + I+C++   +YF    + P + ++ C+
Sbjct: 253 IKINNISCQEPKRVYFSSFPALPRLSLIVCD 283


>UniRef50_C4SC03 Transcriptional regulatory protein n=2 Tax=Yersinia
           RepID=C4SC03_YERMO
          Length = 281

 Score = 83.2 bits (204), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 67/275 (24%), Positives = 117/275 (42%), Gaps = 23/275 (8%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           +IIN  + F  +  +L  +      + L  P SRCL LLL+    V++Q +F   VWE +
Sbjct: 8   FIINGKVCFLSDEHRLEPLGEQGSAISLNVPVSRCLLLLLQRKGSVISQSEFVYEVWESK 67

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
           G     NT +QNI ++R+  +  G    S+I TVP+ G +    +   N   + ST   T
Sbjct: 68  GQFANANTYFQNIHLLRKALKTSG-IEESIIKTVPKEGIRFTGTVTYLNESNSESTAELT 126

Query: 123 HN--------------APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY 168
            N              AP  I V    K     A  F+++ + +IK   ++    +    
Sbjct: 127 ENETRNIANEASADKQAPDVIDV----KMQPPFAPFFSSQKMLYIKIFFVLGLLSIFILL 182

Query: 169 SAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHP 228
              +  + N+   FF +Y+ + E+N C    +  +I  L    +Y   + +   +C+   
Sbjct: 183 LLNFHKDTNKNTDFFSNYQLIGEVNQCKVYASNTSI--LWPRSEYLDFVKNKNTSCQPGQ 240

Query: 229 WLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSY 263
             Y  +       ++  C+K+ +    A+CLT  Y
Sbjct: 241 VAYIAMNIFRTRALIHICDKSVSN--TASCLTKLY 273


>UniRef50_C4SUH9 Putative uncharacterized protein n=1 Tax=Yersinia frederiksenii
           ATCC 33641 RepID=C4SUH9_YERFR
          Length = 267

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 60/264 (22%), Positives = 119/264 (45%), Gaps = 21/264 (7%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + INDNI F+PE   ++S       + +  P ++ L   +     +++Q D ++  W + 
Sbjct: 5   YTINDNITFYPE-SGILSSSLGGARIKINVPTAQLLEAFVNRVGLIISQSDLYSIAWGDN 63

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
           G+ V  NTLYQNIS++R+  + +G +  + I TV  +GF     I     V     D   
Sbjct: 64  GVNVTPNTLYQNISLLRKALQDIGLSGEA-ITTVRGKGF-----IFTVTKVTECEIDIDP 117

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKH---IKSHLIMLSAFVIGAYSAYWLWNNNQP 179
            +    I       E+I   +     + K+   I + +++ ++ +I   + ++  + + P
Sbjct: 118 EDDEIII-------ENIVPQQQDEKLVTKNKYKIYNIVLLFASVLIFFGAVFYFIHKSIP 170

Query: 180 KPFF---KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAK 236
           K      K++  +++I+GC    T   +  L+  +K  T +    + C  +P++Y     
Sbjct: 171 KRIIDYPKNFTFLSKIDGCSI-FTSTELHNLESQEKVNTFLSGQSLECNNYPYIYLNYTI 229

Query: 237 SSPGMIVMACNKNYNQHEVANCLT 260
             P + V++C    N  +  NC T
Sbjct: 230 RHPTISVISCEFEVNYSKKNNCRT 253


>UniRef50_B2VGK3 Putative transcriptional regulator n=1 Tax=Erwinia tasmaniensis
           RepID=B2VGK3_ERWT9
          Length = 301

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/299 (24%), Positives = 121/299 (40%), Gaps = 47/299 (15%)

Query: 5   INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64
           +N+ + F P+ +++    N     V++  AS CL LL+E    +V  Q F+  VW   G 
Sbjct: 16  LNNFLIFEPDKKRITGRGNP---AVISASASLCLELLIENVGLLVTHQQFYDYVWRRFGT 72

Query: 65  RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS----STDA 120
              + TLYQNIS +RR     G     +I T+PR+GF +    ++Q   ++S    ST+ 
Sbjct: 73  EPASTTLYQNISALRRALNKAG-LQEDIIRTMPRKGFLLSPQTSVQRESLSSFTPVSTEP 131

Query: 121 HTHNAPPA--------------IKVNAGYKESIGGAKNFNNK----------ILKHIKSH 156
              N   A              ++     +ES  G KNF              LK  K+ 
Sbjct: 132 ERANTLSAGGNEMPDPSPTDERMRTAQNKQESDSGNKNFLYSALTECHFFPAFLKSKKTM 191

Query: 157 LIMLSAFVIGAYSAYW-----LWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFD 211
            +    F+   +S+++     L  N+    +  +YK      GC   +  +  DG    D
Sbjct: 192 AVTFMLFLALLFSSFFYIRAGLNYNDAVFVYSTNYK------GC---IIFNNADGWLGKD 242

Query: 212 KYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSY-REVNRD 269
           + K  + +  I C    ++Y    K +  +    C    + H   NC +  Y + +N D
Sbjct: 243 EVKKLVDEMKIKCSTTSYVYLTAFKHADSLSYFDCEHPLSGHVRTNCRSHYYVKNLNND 301


>UniRef50_C4UJG3 Transcriptional regulator n=1 Tax=Yersinia ruckeri ATCC 29473
           RepID=C4UJG3_YERRU
          Length = 262

 Score = 71.6 bits (174), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 111/260 (42%), Gaps = 22/260 (8%)

Query: 5   INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64
           IN+++ F+PE   + S    +  + +  P S+   + +      V+Q + +T  W E  +
Sbjct: 7   INNSVLFYPESGDIASSLTGN-TIKINMPTSQLFEVFITRMGVAVSQNELYTAAWGENSV 65

Query: 65  RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHN 124
            V  NTLYQNIS++R+  +  G  + SL  T+  +GF I    ++  H +    D     
Sbjct: 66  NVTPNTLYQNISLLRKALQDSGIPSESL-KTLRGKGF-IFTVASVVEHCVEDIQDVKDSE 123

Query: 125 APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP---KP 181
             P       Y +             K I  + ++L++ +I      +    N P     
Sbjct: 124 ITPEKSEPTHYGK-------------KTIAYYSMLLTSLIIVFLGVLFYDYKNIPWRVNN 170

Query: 182 FFKDYKTVAEINGCH-FNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240
           + KD+  +++INGC  FN TE     +    K    +      C+ +P++Y   ++    
Sbjct: 171 YPKDFVFISKINGCSIFNSTEG--KSIVNNQKINRLVKTLPAECESYPYVYISYSERHAT 228

Query: 241 MIVMACNKNYNQHEVANCLT 260
           + +++C  + N  E  +C T
Sbjct: 229 VSIISCRYDMNYTEQNDCKT 248


>UniRef50_Q7VR33 Transcriptional regulatory protein, C terminal domain n=2
           Tax=Candidatus Blochmannia RepID=Q7VR33_BLOFL
          Length = 212

 Score = 69.7 bits (169), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 97/204 (47%), Gaps = 25/204 (12%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLE----AFPDVVAQQDFFT 56
           M +II+ NI F      L S+H++  ++ L+T A R L  L++      P  V ++  FT
Sbjct: 1   MKYIIHSNIAFDTTEYILTSLHDSHASIKLSTSAGRILEELIKNRNTGLP--VTREHLFT 58

Query: 57  RVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS 116
            VW+  G+      L Q +S+IR+    +G  + S+I TVP+RG KI+N + I+      
Sbjct: 59  TVWKTHGLEPSNGNLNQQVSLIRKTLTLLGLNSSSII-TVPKRGLKINNQLIIE------ 111

Query: 117 STDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKS---HLIMLSAFVIGAYSA--Y 171
               H ++  P   VN   +  I       N ILK+  +   ++++L+A +I  +S    
Sbjct: 112 --AVHNNSPNPQSTVNP-IENQINNTPPLPNTILKNTITYVKYILILTAMLIIIFSIGFI 168

Query: 172 WLWNNNQPKPFFKDYKTVAEINGC 195
           +L+N       +       EIN C
Sbjct: 169 YLYNKTNNTKLY----CCKEINSC 188


>UniRef50_Q2NSQ9 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str.
           'morsitans' RepID=Q2NSQ9_SODGM
          Length = 270

 Score = 68.9 bits (167), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 134/282 (47%), Gaps = 45/282 (15%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLE--AFPDVVAQQDFFTRV 58
           M +IIN  + F      L  V +AD +V L+  A R L  L++     + V ++  F  V
Sbjct: 1   MKYIINSTVAFDTTEYLLTLVDDADTSVKLSNSAGRVLEELIQYRGTGEPVTREHLFASV 60

Query: 59  WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI--------Q 110
           W   G++     L Q +S+IR+G  ++G    S I T+P+RG K+++ + I        Q
Sbjct: 61  WSAHGLQPSNGNLNQQVSLIRKGLTSLG-LDASAIITIPKRGLKLNDQLVISTLEEDVFQ 119

Query: 111 NHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSA 170
              I +  +     APP + ++ G +++I GA      +L  I + L ++ A++      
Sbjct: 120 ATCIPAVNEFPMELAPP-VMLSRG-RKNINGALT----LLMVIVTLLTVIMAYI------ 167

Query: 171 YWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGIN----CKK 226
           Y+  ++NQ K +F      ++IN C    T   I GL++ D Y+ RI+++       CK 
Sbjct: 168 YYEDDDNQ-KLYFS-----SQINSCKV-YTFHPIPGLEKED-YRLRIVEAMKGNVEKCKN 219

Query: 227 HPWLYF-------PLAKSSPGM--IVMACNKNYNQHEVANCL 259
           +  + F       PL + +  +   +  C K+ + H ++NCL
Sbjct: 220 NYIVIFSKTLIPDPLIQDNINVRTFMAKCRKDEDDH-ISNCL 260


>UniRef50_B2VGZ0 Transcriptional regulatory protein n=1 Tax=Erwinia tasmaniensis
           RepID=B2VGZ0_ERWT9
          Length = 190

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 59/104 (56%), Gaps = 1/104 (0%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           MY+I+N  I+F+P+  +L  ++  D ++VL+ PASR L  L+     VV +      VWE
Sbjct: 7   MYFILNKTIKFYPDTNELAIINEQDNSIVLSKPASRLLLTLINHLNVVVTRDYLLKTVWE 66

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104
           + G     N LY  IS +R+ F ++ +   S++ TVP+ G ++ 
Sbjct: 67  DYGYTPSNNNLYMAISELRKSFSSL-NGGESILVTVPKVGLRLE 109


>UniRef50_D0YIE0 Transcriptional regulator, CadC n=6 Tax=Klebsiella
           RepID=D0YIE0_KLEVA
          Length = 224

 Score = 64.3 bits (155), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 28  VVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGD 87
           V L  P +RCL LLL+    V+++ +F   VWE  G+ V  NT YQNIS++R+     G 
Sbjct: 45  VSLNAPTARCLLLLLQNSGKVISRDEFLAAVWETRGVVVSQNTFYQNISLLRKSLLKAG- 103

Query: 88  TTHSLIATVPRRGFKIHND 106
            +  +I TV ++GF +  D
Sbjct: 104 LSADIIITVRQKGFSVAPD 122


>UniRef50_A8GBW4 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568
           RepID=A8GBW4_SERP5
          Length = 279

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 8/147 (5%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M + +ND+I F  +   L     +D  + ++ P+ R L LL+    + V ++  F +VW+
Sbjct: 1   MKYRLNDHIIFDVDTGTLSLTELSDDPISISNPSKRLLLLLITHHGEAVGREVIFKKVWD 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ--NHVINSST 118
           + GM    N L Q +S +RR  + +G     +IATVP+ GF +  +I ++  +   NS T
Sbjct: 61  DYGMVSGNNNLNQCVSKLRRVIKNLG-IEEEVIATVPKVGFMLRYEIIVEHCDGPENSFT 119

Query: 119 DAHTHNAP-----PAIKVNAGYKESIG 140
           D  T   P     P I  +AG   S+G
Sbjct: 120 DEETSVIPHASVQPEIASSAGKPGSVG 146


>UniRef50_C4T4W9 DNA-binding winged-HTH domains n=1 Tax=Yersinia intermedia ATCC
           29909 RepID=C4T4W9_YERIN
          Length = 290

 Score = 61.2 bits (147), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 1/102 (0%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++IN  I F P  +KL+ +++ D+ V+L+ PA+R L   ++     + +      +WE
Sbjct: 1   MKYLINYTIFFKPSEKKLMILNDEDIFVILSNPATRLLLEFIKHRNKAIDRITLLKDIWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFK 102
           + G     + L   +S +R+ F+A+G++   +I T+P+ GF+
Sbjct: 61  DYGFTASNSNLNTYVSELRKAFKALGESPQ-VILTIPKHGFQ 101


>UniRef50_C4SV61 Putative uncharacterized protein n=1 Tax=Yersinia frederiksenii
           ATCC 33641 RepID=C4SV61_YERFR
          Length = 258

 Score = 60.5 bits (145), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 54/247 (21%), Positives = 106/247 (42%), Gaps = 25/247 (10%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++IN ++ F+P    + S+   +  V L +P ++ L   +      ++Q + +   W E+
Sbjct: 9   YVINGDVIFYPGSGIVSSLLTGN-TVKLNSPTAQLLEAFVSRVGITISQSELYNIAWGEK 67

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS---STD 119
           G  V  NTLYQNIS++R+  + VG T  S + TV  +GF       I+N   N    +  
Sbjct: 68  GSSVTPNTLYQNISLLRKALKDVGVTGES-VTTVRGKGFIFTMATVIENMTDNEIVKNIS 126

Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179
              ++     K+   Y   +GG               +++L  F I +   Y++   +  
Sbjct: 127 LECNDNKTKKKMIIVYSIIMGGC-------------FILILLYFFIKSQPGYFVARKSDG 173

Query: 180 KPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239
             F      + E    +++ + D    + + D +    L S   C+ +P+LY  L++   
Sbjct: 174 FSF----SHINEKCFIYYDNSNDMNSIIPDIDVFLEGTLSS---CQVYPYLYISLSELHS 226

Query: 240 GMIVMAC 246
            + + +C
Sbjct: 227 TISLTSC 233


>UniRef50_B2VCE9 Probable transcriptional regulator n=1 Tax=Erwinia tasmaniensis
           RepID=B2VCE9_ERWT9
          Length = 134

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 1/108 (0%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN  I F      L S++N+   V L+ P +R L+ L+    +++ ++D   +VWE
Sbjct: 1   MNYIINKKIYFNSLKGLLNSMNNSVPMVQLSKPGARLLAELIIHSGEIMTREDLIKKVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108
           +  +    + L  +IS++R+ F  + D T  +I TVP+ GF++  +I+
Sbjct: 61  DHNLTPSGSNLSNHISLLRKAFLQL-DMTERIIITVPKVGFRLEAEID 107


>UniRef50_C1MAT2 Predicted protein n=2 Tax=Citrobacter RepID=C1MAT2_9ENTR
          Length = 261

 Score = 57.4 bits (137), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/262 (20%), Positives = 111/262 (42%), Gaps = 15/262 (5%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++I + I F P  + L  V + +  + L   AS CL LL++    VV+Q +     W + 
Sbjct: 9   YLIENRIIFTPATQCLARVDHPNQRIKLKHSASLCLLLLIQHRGQVVSQNELLEFGWGKN 68

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
             +V  N  YQ+I  +R+      +    LI T+PR+G  I  + +IQ   +  + + ++
Sbjct: 69  HRQVSFNAFYQSILSLRKS-LLQLELEQPLITTIPRKGLIIQEEFDIQ---VIETPEENS 124

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
            +A  ++  +A  +E +  A      ++   ++ ++ L+  +       W  +++    +
Sbjct: 125 ASAEESLAPDATIEEFL--ADTPRQPLITAAETVMLALTLIICVLILYPWQASDD----Y 178

Query: 183 FKDYKTVAEI-NGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGM 241
           F  Y T  +   GC +    D       F ++   I  +   C+ H ++Y      S  +
Sbjct: 179 FSGYITADKAPTGCQYYFNNDA----SNFTRHTAFIDKNPGLCQSHKFIYITTYPESKKL 234

Query: 242 IVMACNKNYNQHEVANCLTLSY 263
            V+ C       +   C ++ Y
Sbjct: 235 SVLVCRSPIKARQENACQSVYY 256


>UniRef50_Q1Z5R8 Transcription activator ToxR n=4 Tax=Photobacterium
           RepID=Q1Z5R8_PHOPR
          Length = 291

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 52/103 (50%), Gaps = 5/103 (4%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++I     F P    LI  H +D    L +  SR L LL+E    ++ +      VW E+
Sbjct: 8   YLIGQRFLFDPYDNSLIDQHESDELTRLGSNESRALGLLIEDPGAIITRNRLHDYVWREQ 67

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHS--LIATVPRRGFKI 103
           G  V  ++L Q IS +R+  +   D+T S   I TVP+RG+++
Sbjct: 68  GFEVDDSSLTQAISTLRKALK---DSTKSPDFIKTVPKRGYQM 107


>UniRef50_B1JQB0 Transcriptional regulator, CadC n=18 Tax=Yersinia
           RepID=B1JQB0_YERPY
          Length = 250

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 21/106 (19%)

Query: 4   IINDNIEFWPEHR------KLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTR 57
           +IND + F P+ R      K+  + N +         S  LSLL E +P+ ++++D   R
Sbjct: 5   VIND-VFFTPQKRTIDRNGKVTKIRNKE---------SELLSLLCEYYPEPISREDIEKR 54

Query: 58  VWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103
           +W  EG  V  NTL Q IS +R    A+ D  H L+ T+P++G++I
Sbjct: 55  LW--EGSYVTDNTLTQTISNLR---HALDDKKHELVVTIPKKGYRI 95


>UniRef50_C7BJK4 Putative membrane protein n=1 Tax=Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949 RepID=C7BJK4_PHOAA
          Length = 312

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 84/186 (45%), Gaps = 13/186 (6%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++IN  + F P+ + L   +N    V L+ PASR    L++   + + ++D    VWE
Sbjct: 26  MKYVINIIVVFDPKEKTLALFNNPLNTVKLSNPASRLFLELIKNNGETIPREDLLKNVWE 85

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI------------N 108
           + G     + L   IS IR+   A   T  ++I T+P+ GF++  DI            N
Sbjct: 86  DYGFTGSNSNLNSYISEIRKNL-ACLSTDLTVIKTIPKVGFRLEADIQVSLQESPEEENN 144

Query: 109 IQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY 168
               +I S +D ++ +     +V     E+    ++ NN + K +K+ + +   F+    
Sbjct: 145 ADTDIIISESDINSLHRKDRPRVEDLEGENRVLKEHRNNHVNKWLKARIFLGIVFIFLLL 204

Query: 169 SAYWLW 174
           S Y  +
Sbjct: 205 SFYVFY 210


>UniRef50_D2TAS4 Cholera toxin transcriptional activator n=2 Tax=Erwinia pyrifoliae
           RepID=D2TAS4_ERWPY
          Length = 146

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 60/110 (54%), Gaps = 1/110 (0%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN  + F   +  L    N+D  + L+ P +R L+ L+    +++ ++D   +VWE
Sbjct: 11  MNYIINHYLCFDSSNGLLKLTDNSDSTLQLSRPGTRLLTQLIIHAGEIMTREDLIKKVWE 70

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ 110
           +  +    + L  +IS++R+ F  +   T  +I T+P+ GF++   ++I+
Sbjct: 71  DHDLTPSGSNLSNHISLLRKAFSQLA-VTEIMITTIPKVGFRLDAVVSIE 119


>UniRef50_UPI0001C33D1D hypothetical protein CATC2_20487 n=1 Tax=Citrobacter youngae ATCC
           29220 RepID=UPI0001C33D1D
          Length = 257

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 103/266 (38%), Gaps = 20/266 (7%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++IN  +EF P+++ L++       + L  PAS C   L+    D+V+Q    T  W E 
Sbjct: 2   YLINQLVEFNPDNKSLVNRQTGR-TIQLQLPASLCFLYLITHASDIVSQNTLMTVGWGER 60

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
                 NT YQ I  +R     VG      + T+ RRG +++     +N  + + TD  +
Sbjct: 61  NNVTTANTFYQAILTLRNALADVG-LPRDTVKTISRRGLRLN-----ENTQVEAITDLQS 114

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL-WNNNQP-K 180
             +P ++       + I  A     +    I    I+ S  ++ A    WL W   +P  
Sbjct: 115 DVSPLSVIEERAPAKIIPTAPQQPTQ----IAWWNILFSVGIVIATLVIWLVWYQTRPVM 170

Query: 181 PFFKDYKTVAEI---NGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKS 237
           PF K      +I     C    + +  D    F+  +         C+ +  ++      
Sbjct: 171 PFSKFVSVSMQIPSRQNCKIYYSPNEYDQQGYFNLMQLH----PFLCENNKHVFLTGYLK 226

Query: 238 SPGMIVMACNKNYNQHEVANCLTLSY 263
           +  M+   C+K+      A C T  Y
Sbjct: 227 AERMVAFVCDKDARTDAHAFCTTHYY 252


>UniRef50_C4SF84 DNA-binding winged-HTH domains n=1 Tax=Yersinia mollaretii ATCC
           43969 RepID=C4SF84_YERMO
          Length = 276

 Score = 54.7 bits (130), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 114/270 (42%), Gaps = 29/270 (10%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN N+++      L    N    + LT   S  L LL++     +++    + +WE
Sbjct: 1   MEYIINGNVKYNSSDGTLFCPDNNIDMITLTRVTSELLLLLIKNNGAPLSRDTILSELWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---IQNHVINSS 117
           + G+   +N L   +S++R+     G T  +LI T+P+ GF    DI      NH+  + 
Sbjct: 61  KRGLTASSNNLNNYVSMLRKALAQCGYT--NLIVTIPKHGFLFEADITEMGEDNHLTRTD 118

Query: 118 ------TDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171
                 T  H  + P A  ++  +K S+ G   F  ++   I    ++   F    Y+ +
Sbjct: 119 PKSVELTQRHEVDPPLASAISDHHKTSLSGF--FKGRVAVLILFFAVLTLLFSPSIYNYF 176

Query: 172 WLWNNNQPKPFFKDYKTVA-EINGCHFNVTEDTIDGLKEFDKYKT--RILDSG-INCKKH 227
            L          +  +T+   I+ C   + +DT   L   +   T   I+++G + C   
Sbjct: 177 RL----------QSLRTLLFNIDQCRIYLMDDTTRRLDSSNTISTIKMIINTGNLKCDSP 226

Query: 228 PWLYF--PLAKSSPGMIVMACNKNYNQHEV 255
             +Y+     K S G ++M    +Y  +++
Sbjct: 227 ANVYYFADKKKDSSGHVIMTDMLSYCPYDI 256


>UniRef50_D2TQU5 Putative transcriptional regulator n=2 Tax=Enterobacteriaceae
           RepID=D2TQU5_CITRO
          Length = 242

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 2/111 (1%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M + I   I F  E   L+++   D  + L+  ++R L+ LL    D++++ + F  V++
Sbjct: 1   MRFDIEGFITFDTEDASLVNLLTGDC-IELSQTSTRLLAELLNHRGDILSRNEIFQSVFD 59

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQN 111
           + G R   + L Q IS +RR    +G     +I TVPR GFKI  D  + N
Sbjct: 60  KYGARASNSNLNQYISTLRRNLSDLG-VKKEIIVTVPRIGFKISEDAIVNN 109


>UniRef50_D2A9T6 Transcriptional regulator, CadC n=3 Tax=Shigella flexneri
           RepID=D2A9T6_SHIF2
          Length = 254

 Score = 54.3 bits (129), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
           ++IIND I F P    L +V+  D  +     A   L++LLE+    V +      V E 
Sbjct: 6   FFIINDAIIFDPNKCSLSNVNTQD-EINFPATAGCILAVLLESNGGAVDRNSIIDSVLER 64

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
               +  NTL Q IS++R+ F+ +G    ++I T+P+ GF I  +I I      S  D+H
Sbjct: 65  FSFDLSNNTLNQYISLLRKSFKNIG-VEENVILTIPKVGFYISENITISKQ---SYDDSH 120

Query: 122 TH 123
             
Sbjct: 121 LQ 122


>UniRef50_B4TIC0 Putative uncharacterized protein n=33 Tax=Enterobacteriaceae
           RepID=B4TIC0_SALHS
          Length = 147

 Score = 53.9 bits (128), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 66/128 (51%), Gaps = 10/128 (7%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLE-AFPDVVAQQDFFTRVWEE 61
           +IIN N  +     +L +V N+ + + +T   ++CLS ++E A  +++ +Q   T +W  
Sbjct: 4   YIINSNCIYNEGKYELRTVSNSQV-IKMTAMRAKCLSFIIENAHLEIIERQKITTALWGS 62

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
               V    L Q + +IRR  +A+G   + L  T+PR+G K+++DI I       +TD+ 
Sbjct: 63  RSHYVNDANLTQILYLIRRDLKALG--INDLFITIPRQGLKVNSDIAI------IATDSE 114

Query: 122 THNAPPAI 129
           T      I
Sbjct: 115 TKGRKKQI 122


>UniRef50_B4EUN0 Putative membrane protein n=2 Tax=Proteus mirabilis
           RepID=B4EUN0_PROMH
          Length = 274

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 61/108 (56%), Gaps = 3/108 (2%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++IND+I F+ +   L S        +L  P+S+ L  L+    ++V Q++ F   W ++
Sbjct: 2   YLINDDIIFYSDKNLLFSKKLNKEKKILA-PSSKMLIHLITV-NELVTQRELFRIGWGDK 59

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ 110
              +  +  YQNI ++R+ F  + D    ++ TVPR+G+ I+++I+I+
Sbjct: 60  EKFITNSAFYQNILLLRKAFNEL-DIDDEIVITVPRKGYIINHNISIE 106


>UniRef50_D1P736 Putative transcriptional regulator with C-, effector domain of the
           bipartite response regulator n=4 Tax=Providencia
           RepID=D1P736_9ENTR
          Length = 322

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/98 (37%), Positives = 50/98 (51%), Gaps = 5/98 (5%)

Query: 10  EFWPEHRKLISVHNADLN--VVLTTPASRCL-SLLLEAFPDVVAQQD-FFTRVWEEEGMR 65
           +F  E RK +     DL+  V L+ PA+R    +LL  F   +A +D   T VWEE G+ 
Sbjct: 12  KFIFEQRKCLIYLKGDLDQSVELSKPAARLFGEILLLNFKKGIATRDELLTNVWEEYGLV 71

Query: 66  VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103
              N L   IS IR+    VG      I TVP++GF+I
Sbjct: 72  GSNNNLNTYISEIRKKLEQVG-IDPKTIVTVPKKGFRI 108


>UniRef50_UPI00018266EF transcriptional regulator, CadC n=1 Tax=Enterobacter cancerogenus
           ATCC 35316 RepID=UPI00018266EF
          Length = 184

 Score = 52.4 bits (124), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 58/108 (53%), Gaps = 6/108 (5%)

Query: 25  DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84
           D + +LT  A+  + LL+    +VV ++ FF+ VW+  G++   N+L Q ISI+R+    
Sbjct: 26  DAHQILTGTANAVMKLLVRHHGNVVERELFFSEVWDARGVQGSNNSLNQYISILRKLLAG 85

Query: 85  VGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA---PPAI 129
                 +++ TVP++GF +  DI +Q   +    D H+      PPA+
Sbjct: 86  FVPEKPAIV-TVPKKGFMLSADIRVQP--MPDPADKHSDAPRCFPPAL 130


>UniRef50_B5FBZ3 Toxin transcriptional activator ToxR n=3 Tax=Vibrio fischeri
           RepID=B5FBZ3_VIBFM
          Length = 293

 Score = 52.4 bits (124), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 26/185 (14%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           II D   F P    LI   N D  + L    SR LSLL++    VV++ +    VW ++G
Sbjct: 9   IIGDRFLFDPNDNSLIDTLNDDEIIRLGGNESRVLSLLIQEPGKVVSRHELHEYVWRDQG 68

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTH--SLIATVPRRGFKI----------------HN 105
             V  ++L Q IS +R+  +   D T     + TVP+RG++                   
Sbjct: 69  FEVDDSSLTQAISTLRKMLQ---DPTKLPVYVKTVPKRGYQFISTAVAQVDPDQKIEAET 125

Query: 106 DINIQNHVINSS---TDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIK--SHLIML 160
           + N++N  +N S   T  H  +A  A  V      +I      N+    H+     ++++
Sbjct: 126 EHNVENTPLNDSLNNTSVHQDDAQEAQTVAPQQNATIHQPSTANSAPQAHLSLLGTIMLI 185

Query: 161 SAFVI 165
            AFV+
Sbjct: 186 IAFVL 190


>UniRef50_P15795 Cholera toxin transcriptional activator n=121
           Tax=Gammaproteobacteria RepID=TOXR_VIBCH
          Length = 294

 Score = 52.4 bits (124), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 67/130 (51%), Gaps = 6/130 (4%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           +I+ +   F P    LI   +++  + L +  SR L LL +   +V+++ D    VW E+
Sbjct: 20  FILAEKFTFDPLSNTLIDKEDSEEIIRLGSNESRILWLLAQRPNEVISRNDLHDFVWREQ 79

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHS--LIATVPRRGFKIHNDIN-IQNHVINSSTD 119
           G  V  ++L Q IS +R+  +   D+T S   + TVP+RG+++   +  ++  +   S  
Sbjct: 80  GFEVDDSSLTQAISTLRKMLK---DSTKSPQYVKTVPKRGYQLIARVETVEEEMARESEA 136

Query: 120 AHTHNAPPAI 129
           AH  + P ++
Sbjct: 137 AHDISQPESV 146


>UniRef50_A1JPG4 Possible reguatory protein n=5 Tax=Yersinia RepID=A1JPG4_YERE8
          Length = 219

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 10/99 (10%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVV-LTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           II  +I F P  R L    N   +V+ +    S  LSLL   +PDV++++D   ++W E 
Sbjct: 4   IIIGDIIFTPLKRTL----NKGGSVIKIRNKESEVLSLLCFHYPDVLSREDIEKKIWSES 59

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGF 101
              V  NTL Q IS +R    A+ D  H L+ T+P++G+
Sbjct: 60  --YVTDNTLTQTISNLR---HALNDKKHELVTTIPKKGY 93


>UniRef50_B2D6Y9 ToxR n=2 Tax=Vibrio cholerae RepID=B2D6Y9_VIBCH
          Length = 186

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 66/130 (50%), Gaps = 6/130 (4%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           +I+ +   F P    LI   +++  + L +  SR L LL +   +V+++ D    VW E+
Sbjct: 8   FILAEKFTFDPLSNTLIDKEDSEEIIRLGSNESRILWLLAQRPNEVISRNDLHDFVWREQ 67

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHS--LIATVPRRGFKIHNDIN-IQNHVINSSTD 119
           G  V  ++L Q IS +R+  +   D+T S   + TVP+RG+++   +  ++  +   S  
Sbjct: 68  GFEVDDSSLTQAISTLRKMLK---DSTKSPQYVKTVPKRGYQLIARVETVEEEMARESEA 124

Query: 120 AHTHNAPPAI 129
           AH  + P  +
Sbjct: 125 AHDISQPECV 134


>UniRef50_D2YQP0 Transmembrane regulatory protein ToxR n=7 Tax=Vibrio
           RepID=D2YQP0_VIBMI
          Length = 280

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 5/108 (4%)

Query: 18  LISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISI 77
           LI   N++  + L +  SR L LL +   +VV++ D    VW E+G  V  ++L Q IS 
Sbjct: 24  LIDKENSEEIIRLGSNESRILWLLAQRPNEVVSRNDLHDFVWREQGFEVDDSSLTQAIST 83

Query: 78  IRRGFRAVGDTTHS--LIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
           +R+  +   D+T S   + TVP+RG+++   +      I +  D  TH
Sbjct: 84  LRKMLK---DSTKSPQYVKTVPKRGYQLITRVETVEEEIQNDMDEVTH 128


>UniRef50_B2Q575 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2Q575_PROST
          Length = 329

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 3/106 (2%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLS--LLLEAFPDVVAQQDFFTRVWE 60
           ++IN+   F      +   +  D  V L+ PASR L+  ++L     +  +++   +VWE
Sbjct: 7   YLINNKFIFETGKNFIFIKNEVDKFVELSKPASRLLNEIIILNQKSKIATREELLIKVWE 66

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
           E G+    N L   IS IR+ F  +G    S I TVP++GF+   D
Sbjct: 67  EYGLVGSNNNLNTYISEIRKKFELIGIDPKS-IVTVPKKGFRFDCD 111


>UniRef50_A7MIL4 Putative uncharacterized protein n=2 Tax=Cronobacter
           RepID=A7MIL4_ENTS8
          Length = 148

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/106 (29%), Positives = 58/106 (54%), Gaps = 4/106 (3%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLE-AFPDVVAQQDFFTRVWEE 61
           ++IN N  F   + +L +  NA + + +T+  +RCLS ++E A   V+ +Q     +W  
Sbjct: 4   YLINHNCIFTEANNELKNTDNACV-IKMTSMRARCLSFIIENAKNGVIEKQQIAAFLWGN 62

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI 107
            G  +    L Q + ++RR  RA+G   + L  T+P+ G K+++D+
Sbjct: 63  RGQFISDANLTQVLYLLRRDLRALG--INDLFVTIPKLGIKVNDDV 106


>UniRef50_A8GJD8 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568
           RepID=A8GJD8_SERP5
          Length = 267

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 52/237 (21%), Positives = 95/237 (40%), Gaps = 15/237 (6%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN  +++      LI   N+   + LT  A+  L L +      + + D    +W 
Sbjct: 1   MEFIINRVLKYNSSDGTLICPDNSVDMITLTRVANELLFLFINNNHISLRRDDILNELWG 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND-INIQNHVINSSTD 119
           + G+   +N L   +S++RR     G     LI T+P+ GF    D + +  + ++  TD
Sbjct: 61  KRGLSASSNNLNNYVSMLRRALEQCG--FAGLITTIPKYGFIFEADVVVVATNALSEDTD 118

Query: 120 AHTHN-APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178
               N A  ++  N   K+     + F++  LK     ++++          Y+   +N+
Sbjct: 119 QTDENEALASLVFNNEEKKINPKVRYFSSVTLKTAFVFMVIIMMLFSSQIYDYFYLKSNR 178

Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFD---KYKTRILDSGINCKKHPWLYF 232
            + F         +  C F + +D I G  E D     K       INC     +Y+
Sbjct: 179 TEVF--------SMGKCTFYLIDDKIGGRVEEDVIHNMKVAAKKEKINCDVKSNVYY 227


>UniRef50_C1MDX4 Putative uncharacterized protein n=1 Tax=Citrobacter sp. 30_2
           RepID=C1MDX4_9ENTR
          Length = 251

 Score = 51.2 bits (121), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 2/109 (1%)

Query: 9   IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68
           +EF P+ + L++       + L  PAS C   L+    D+V+Q    T  W E      T
Sbjct: 2   VEFNPDSKSLVNRQTGRA-IQLQLPASLCFLYLITHASDIVSQNTLMTIGWGERNNVTTT 60

Query: 69  NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS 117
           NT YQ I  +R     VG      + T+ RRG +++ +  ++   +  S
Sbjct: 61  NTFYQAILTLRNALADVG-LPRDTVKTISRRGLRLNENTQVETITLQQS 108


>UniRef50_C4T6D4 DNA-binding winged-HTH domains n=1 Tax=Yersinia intermedia ATCC
           29909 RepID=C4T6D4_YERIN
          Length = 290

 Score = 50.8 bits (120), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +I+N  I F P  + L+ +++ +  V L+ PASR L   ++   + + +      VWE
Sbjct: 1   MKYILNLTIVFNPSEKILMELNDEERAVTLSNPASRLLLEFIKHQNEPIERDVLLKNVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFK 102
           + G     + L   +S +R+   A G+    +I T+P+ GF+
Sbjct: 61  DYGFTASNSNLNAYVSELRKALAAFGEDPQ-IITTIPKYGFQ 101


>UniRef50_Q9RHQ9 Transmembrane regulatory protein ToxR n=2 Tax=Grimontia hollisae
           RepID=Q9RHQ9_VIBHO
          Length = 292

 Score = 50.1 bits (118), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/112 (25%), Positives = 57/112 (50%), Gaps = 5/112 (4%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           +++ +   F P    LI ++  D  + L +   R L +L+E    +V +      VW ++
Sbjct: 8   YLLGERFVFSPSDSSLIDLYENDDLIRLGSNECRVLMVLIEEPHAIVTRNRIHDFVWRKQ 67

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHS--LIATVPRRGFKIHNDINIQNH 112
           G  V  ++L Q+IS +R+  +   D+T S   + TVP+RG+++   + + N 
Sbjct: 68  GFEVDDSSLTQSISTLRKSLK---DSTKSPMFVKTVPKRGYQVVCSVEVYNE 116


>UniRef50_A8GL29 Transcriptional regulator, CadC n=2 Tax=Serratia RepID=A8GL29_SERP5
          Length = 255

 Score = 50.1 bits (118), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 2/102 (1%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++IN  I++      L ++ +    ++L  PA R LS+ +     ++ ++     VWE
Sbjct: 1   MIFVINKTIKYNEYEGTLENIDDPGNTILLVKPACRLLSIFVRNNDMLIKRKQLLDEVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFK 102
           + G++   + L   IS +RR      +    LI T PR+GFK
Sbjct: 61  DYGLKATDSNLNNYISGLRRSLAKFDE--EELIITYPRQGFK 100


>UniRef50_Q8D287 YqeI protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of
           Glossina brevipalpis RepID=Q8D287_WIGBR
          Length = 267

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 62/121 (51%), Gaps = 3/121 (2%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDV--VAQQDFFTRV 58
           M +IIN  + F      L      + ++ L+  A R L  L++   +   ++++  F  +
Sbjct: 1   MKYIINSLVIFDTIEYNLSLFKKKNKHIKLSHSAGRVLEELIKFHKNSSPISREYLFKNI 60

Query: 59  WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118
           W   G++     L Q IS+IR+G + +G    S+I T+P++G K+++ + I+    N++ 
Sbjct: 61  WIIHGLQPSNGNLNQQISLIRKGLKHLG-LNSSVIVTIPKKGLKLNDKLKIKKLEKNNAK 119

Query: 119 D 119
           D
Sbjct: 120 D 120


>UniRef50_C4UIA8 Possible regulatory protein n=1 Tax=Yersinia ruckeri ATCC 29473
           RepID=C4UIA8_YERRU
          Length = 260

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 8   NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
           ++ F P+ R   S+    + V L    S  L+LL E +PD V++      +W +    V 
Sbjct: 46  DVSFIPKIR---SLELNGIEVKLRNKESEVLALLCECYPDPVSRDKIENSIWTDS--YVT 100

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGF 101
            NTL Q IS +R    A+ D  H LI T+P++G+
Sbjct: 101 DNTLTQTISNLR---NALNDKKHELIITIPKKGY 131


>UniRef50_D2A7F9 Membrane protein n=2 Tax=Shigella flexneri RepID=D2A7F9_SHIF2
          Length = 201

 Score = 48.5 bits (114), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 8/120 (6%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
            Y+ +   ++F+P  R++ +     +N  L+    R L LLL+   D   +Q     VW 
Sbjct: 6   FYFSLGQGVKFYPASRRITTSTGNVIN--LSENGYRFLLLLLQGESD---KQHIINEVWR 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E+   V  ++ Y  I ++R+     G  + SLI T+PR+G +      ++ HV  +  D+
Sbjct: 61  EQKGSVSDSSYYGQIYMLRKALDVAG-LSSSLIKTIPRKGVRYLG--KVEKHVCENERDS 117


>UniRef50_A8AP73 Putative uncharacterized protein n=1 Tax=Citrobacter koseri ATCC
           BAA-895 RepID=A8AP73_CITK8
          Length = 233

 Score = 48.5 bits (114), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 3/93 (3%)

Query: 28  VVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGD 87
           V L +PAS  L  L++    VV+Q    T  W E+      NT YQ I I+R     +G 
Sbjct: 5   VTLQSPASLILLYLIQHNNTVVSQNQLITAGWGEKNHVTSANTFYQTILILRNALSDIG- 63

Query: 88  TTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
               LI T+ RRG  I    NIQ   I +   A
Sbjct: 64  LPRDLIKTIARRGMMI--SANIQTDEITAKASA 94


>UniRef50_D1RR55 Transcriptional regulator, CadC n=1 Tax=Serratia odorifera 4Rx13
           RepID=D1RR55_SEROD
          Length = 301

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 36  RCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIAT 95
           + LSLL+   P++V++ +    +W+  G     +T+ Q I  IR+    +GD  H+LI T
Sbjct: 30  QILSLLVARSPELVSRTEIIENIWK--GTYCSDSTINQTIKSIRQ---KIGDVEHTLIRT 84

Query: 96  VPRRGFKIHN 105
           +PR G+K+ N
Sbjct: 85  IPRLGYKVEN 94


>UniRef50_A6AKR5 Transcriptional regulatory protein, C n=3 Tax=Vibrio
           RepID=A6AKR5_VIBHA
          Length = 250

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 3/88 (3%)

Query: 20  SVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIR 79
           ++ N +  + +    S+ L+LLLE  P+VV +QD     W  E   +   +L ++IS++R
Sbjct: 10  TLSNGEKTIKIGYRESQILTLLLERSPEVVKKQDIVQFAWGNE--YIGETSLAKSISVLR 67

Query: 80  RGFRAVGDTTHSLIATVPRRGFKIHNDI 107
           + F  +G    S I TVP+ G+++  D+
Sbjct: 68  QSFIKIG-IKDSPILTVPKVGYRLVEDV 94


>UniRef50_A8GFV8 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568
           RepID=A8GFV8_SERP5
          Length = 299

 Score = 48.1 bits (113), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 5/70 (7%)

Query: 36  RCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIAT 95
           + LSLL+   P++V++ +    +W+  G     +T+ Q I  IR+    +GD  H+LI T
Sbjct: 30  QILSLLVARSPELVSRTEIIENIWK--GTYCSDSTINQTIKSIRQ---KIGDAEHTLIRT 84

Query: 96  VPRRGFKIHN 105
           +PR G+K+ N
Sbjct: 85  IPRLGYKVEN 94


>UniRef50_A8GL31 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568
           RepID=A8GL31_SERP5
          Length = 256

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN  I F  +   +  + +    V+LT    R LSLL++    ++ ++   +  W+
Sbjct: 1   MKFIINKRIIFHEDKSTIELLDDTIEPVMLTATLCRVLSLLVKNNDLLLTREFILSSAWD 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGF 101
           E G     + L   IS+IR+ F + G++   +I TVPR+GF
Sbjct: 61  EYGKSSTHSNLNNYISMIRKIFNSFGES--DIIITVPRQGF 99


>UniRef50_D0ZEM9 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202
           RepID=D0ZEM9_EDWTE
          Length = 251

 Score = 47.4 bits (111), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 5   INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLL--EAFPDVVAQQDFFTRVWEEE 62
           +N+N+ +  +  +L +  + D  ++L   A+R L LL+  +  P  V +   F  VW++ 
Sbjct: 13  LNENVLYNEQEAELKATVDGD-AILLAPSANRLLHLLILNQGIP--VTRDTLFKLVWDDH 69

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI 109
           G+R     L Q IS++RR    VG      I T+P+ GF I   I I
Sbjct: 70  GLRSSNANLNQYISLLRRQLFDVG-LPKDTIVTIPKIGFMIDKTIAI 115


>UniRef50_C4SAM2 Possible regulatory protein n=1 Tax=Yersinia mollaretii ATCC 43969
           RepID=C4SAM2_YERMO
          Length = 243

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 78/177 (44%), Gaps = 18/177 (10%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M  II  NI F P  R   +++     V +    S  LSLL   +P  +++++    +W 
Sbjct: 25  MDEIIIGNIIFTPSKR---TINKGGAVVKIRNKESEVLSLLCHHYPSSLSREEIEREIWG 81

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E    V  NTL Q IS +R    A+ D    L+ T+P++G+ I    +  +   NS  D 
Sbjct: 82  ES--YVTDNTLTQTISNLR---HALDDKARELVTTIPKKGYCIGIKPDFTSS--NSLQDL 134

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177
                   + V       +  + +F+ KI++ I S        ++G + ++ L +N+
Sbjct: 135 ILTQDDSMVSVKPKSTSLVSKSLSFHYKIIRLIVS--------IVGFFISFELTSNS 183


>UniRef50_D0YZ11 Transcriptional activator ToxR n=1 Tax=Photobacterium damselae
           subsp. damselae CIP 102761 RepID=D0YZ11_LISDA
          Length = 299

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 7/96 (7%)

Query: 11  FWPEHRKLI-SVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69
           F P    LI +V N +L + L +  SR LSLL++    ++ +      VW E+G  V  +
Sbjct: 16  FDPYDNSLIDTVENNEL-IRLGSNESRALSLLIDEPGAIITRNRLHDYVWREQGFEVDDS 74

Query: 70  TLYQNISIIRRGFRAVGDTTHS--LIATVPRRGFKI 103
           +L Q IS +R+  +   D T S   + TVP+RG+++
Sbjct: 75  SLTQCISTLRKALK---DPTKSPEYVKTVPKRGYQM 107


>UniRef50_B1J1E8 Two component transcriptional regulator, LuxR family n=3
           Tax=Pseudomonas putida RepID=B1J1E8_PSEPW
          Length = 330

 Score = 46.6 bits (109), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 28  VVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGD 87
           V L   A   L+ L++A   VV + + F+ VW   G  V  N L   IS++R+ F A G 
Sbjct: 23  VPLGGRAFEVLATLIKAKGRVVGKDELFSEVWA--GTVVEDNNLQVQISLLRKAFGAPG- 79

Query: 88  TTHSLIATVPRRGFKIHNDI 107
               LI TVPRRG+++  D+
Sbjct: 80  ----LIQTVPRRGYRLAVDV 95


>UniRef50_B5F706 Putative uncharacterized protein n=20 Tax=Salmonella enterica
           subsp. enterica RepID=B5F706_SALA4
          Length = 149

 Score = 46.6 bits (109), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 5/131 (3%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLE-AFPDVVAQQDFFTRVWEE 61
           + IN+   +    R++IS+H+  + + +T   +RCLS L E A+  ++ ++     VW E
Sbjct: 4   YTINNEFIYNESLREIISLHDKKV-LKVTLMRARCLSYLFENAYKKLITREMISHAVWGE 62

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI-NSSTDA 120
               V    L Q + ++RR  + +G     L  T+PR+G KI     I    I   +   
Sbjct: 63  RSQFVSDANLTQLLYLLRRDLQQIG--LFELFVTLPRQGIKIDERFIIDAADIPPQAIQH 120

Query: 121 HTHNAPPAIKV 131
           HTH     I +
Sbjct: 121 HTHRCNKIISI 131


>UniRef50_C5ZZN9 Putative uncharacterized protein n=1 Tax=Escherichia coli Vir68
           RepID=C5ZZN9_ECOLX
          Length = 216

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/218 (22%), Positives = 89/218 (40%), Gaps = 30/218 (13%)

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
           M V  N LYQ+IS++R+     G T  ++I T PRRGF +  +I I    +  + D  + 
Sbjct: 1   MEVGPNALYQSISMLRKALSTCG-TPDNIILTAPRRGFSLSQEICISCDNLQEAMDEQSS 59

Query: 124 N-APPAIKVNAGYKESIG----GAKNFNNKIL---------KHIKSHLIMLSAFVIGAYS 169
           +    + K+N  + E++     GA    ++++         K  +   I  S F    Y 
Sbjct: 60  DWLNGSDKMNETHGENLMKEMWGAIPSESEMMEISSEYVRDKQCRKRKIDSSIFY---YI 116

Query: 170 AYWLWNNNQPKP----FFKD---YKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGI 222
              L   +   P    F  D   Y    E NGC+    + + D     +     +L +GI
Sbjct: 117 LILLTILSLIVPVYLVFLSDGEHYSKRFEFNGCYVYSRDASND-----NNTMDIVLKTGI 171

Query: 223 NCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLT 260
            C+   ++Y    +      ++ C K  +   + NC++
Sbjct: 172 KCEDRRYVYVTYFQGGDRESLIQCRKPLSTFSLPNCIS 209


>UniRef50_A3UR88 Putative transcriptional activator ToxR n=3 Tax=Vibrionales
           RepID=A3UR88_VIBSP
          Length = 280

 Score = 45.1 bits (105), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           ++N + ++ +    +R L LLL+  P++V +QD  +  W  E   +   +L + IS++R+
Sbjct: 11  IYNDERSIKIGYRETRVLELLLKKSPEIVRKQDIISFAWGSEF--IGDTSLAKCISLLRQ 68

Query: 81  GFRAVGDTTHSLIATVPRRGFKI 103
           GF  +G    + I TVP+ G+++
Sbjct: 69  GFVKLG-IKETPIVTVPKVGYRL 90


>UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q022A1_SOLUE
          Length = 605

 Score = 44.3 bits (103), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 28  VVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGD 87
           V L   A   L +L+E   +VVA+QD  + VW +    V  + L  NISI+RR      D
Sbjct: 2   VALEPKAVEVLLILVEKRGEVVARQDLMSAVWPD--TFVEESNLSSNISILRRQLGTPPD 59

Query: 88  TTHSLIATVPRRGFKIHNDINIQNHVINSST 118
                I T+P+RG++    +N     + ++T
Sbjct: 60  GG-DYIQTIPKRGYRFVAAVNQAGSELEAAT 89


>UniRef50_A9MR60 Putative uncharacterized protein n=11 Tax=Salmonella enterica
           RepID=A9MR60_SALAR
          Length = 149

 Score = 43.9 bits (102), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 7/133 (5%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLE-AFPDVVAQQDFFTRVWEE 61
           + IN++  +    R++IS+ +  + + +T   +RCLS L E A+  ++ ++     VW E
Sbjct: 4   YTINNDFIYNESLREIISLRDKKV-LKVTLMRARCLSYLFENAYKKLITREMISHAVWGE 62

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI---NSST 118
               V    L Q + ++RR    +G     L  T+PR+G KI     I +  I   N  +
Sbjct: 63  RSQFVSDANLTQLLYLLRRDLEQIG--LFKLFITLPRQGIKIDERFIINSADIPPQNIQS 120

Query: 119 DAHTHNAPPAIKV 131
             H +N   +I +
Sbjct: 121 RTHRYNKIISIGI 133


>UniRef50_B2VID6 Putative uncharacterized protein n=1 Tax=Erwinia tasmaniensis
           RepID=B2VID6_ERWT9
          Length = 192

 Score = 43.9 bits (102), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 8/92 (8%)

Query: 11  FWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNT 70
           F P+ R L      D+ V L    +  L+LL   +P+ V+++DF   VW   G  V T +
Sbjct: 17  FNPKTRTL---QKNDIKVQLRKKQADVLNLLCTKYPEPVSREDFLAGVW--NGGYVTTQS 71

Query: 71  LYQNISIIRRGFRAVGDTTHSLIATVPRRGFK 102
           + Q I  +R     + DT   +I T+P+ G++
Sbjct: 72  IAQVIRSLRLD---LDDTNKKIIVTIPKLGYR 100


>UniRef50_B1HZ29 Sensory transduction protein n=3 Tax=Bacillaceae RepID=B1HZ29_LYSSC
          Length = 199

 Score = 43.9 bits (102), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 5/73 (6%)

Query: 29  VLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDT 88
           +LT    +   LL EA+P+VVA+Q   + +W++E   V  NTL  NI  +RR   A+   
Sbjct: 123 LLTLKEMQLSKLLFEAYPNVVARQKLLSAIWDDETF-VEENTLSVNIGRLRRKLEAI--- 178

Query: 89  THSLIATVPRRGF 101
            HS +     RG 
Sbjct: 179 -HSQLEIKTIRGL 190


>UniRef50_C2NAF5 Two-component response regulator n=2 Tax=Bacillus cereus
           RepID=C2NAF5_BACCE
          Length = 257

 Score = 43.9 bits (102), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 3/75 (4%)

Query: 29  VLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDT 88
           +LT    +  ++  EA+P+VV +Q   T +W+EE   V  NTL  NI+ +R+   A+  T
Sbjct: 181 LLTIKEFQLCTMFFEAYPNVVTRQQLLTAIWDEEEF-VEENTLTVNIARLRKKLEAIHST 239

Query: 89  THSLIATVPRRGFKI 103
               I T+   G+++
Sbjct: 240 LE--IRTIRGIGYQL 252


>UniRef50_Q15PB9 Lysine decarboxylase transcriptional regulator, CadC n=1
           Tax=Pseudoalteromonas atlantica T6c RepID=Q15PB9_PSEA6
          Length = 756

 Score = 43.5 bits (101), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 38/154 (24%), Positives = 70/154 (45%), Gaps = 6/154 (3%)

Query: 29  VLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDT 88
            L   A   L+ L +   DVV+Q+D   +VW++    V  N+L + I+ +R+ F   G  
Sbjct: 27  TLPPKALAVLTYLAKHQGDVVSQEDLLNQVWKD--TVVSPNSLQRCIAQLRKAFGDDGK- 83

Query: 89  THSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHN-APPAIKVNAGYKESIGGAKNFNN 147
              LI T  ++G+ +   I  ++H   +  D+ T + +PP      G  + +     F+ 
Sbjct: 84  AQGLIKTHAKKGYSLEAAIRWEDHQKRNVGDSVTLDKSPPNQHAKLGTNKVVKAG--FSA 141

Query: 148 KILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
           K +  +    +++ A VI   S  W  + + P P
Sbjct: 142 KHIFVLSLFTVLVFALVISITSTLWPSSVHNPSP 175


>UniRef50_B9TBN5 Putative uncharacterized protein n=1 Tax=Ricinus communis
           RepID=B9TBN5_RICCO
          Length = 231

 Score = 43.1 bits (100), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 27  NVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVG 86
           +V L+  A R L+LL +A   +V ++  F + W   G+ V  N+L Q I  +R  F  +G
Sbjct: 96  SVALSPIAVRLLTLLADAPNTIVGRRQLFDQGWRRYGIEVCENSLNQVICALRTAFARLG 155

Query: 87  DTTHSLIATVPRRGFKI 103
               S I TVPR G+ +
Sbjct: 156 PEAPS-IRTVPRIGYSL 171


>UniRef50_B3INB4 Transcriptional regulatory protein, C n=2 Tax=Enterobacteriaceae
           RepID=B3INB4_ECOLX
          Length = 270

 Score = 43.1 bits (100), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)

Query: 27  NVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVG 86
           ++ L+ PA R L  L+     ++ + D   +VWE+ G+   + +L   IS IR+ FR +G
Sbjct: 27  SIKLSNPAGRLLYELIINNGKILDRDDLIKKVWEDHGLSGSSVSLNVAISEIRKAFRTLG 86

Query: 87  DTTHSLIATVPRRGFKI 103
                LI T+  +GF +
Sbjct: 87  -CAPLLIKTIRGKGFSL 102


>UniRef50_C9PH99 Putative uncharacterized protein n=1 Tax=Vibrio furnissii CIP
           102972 RepID=C9PH99_VIBFU
          Length = 262

 Score = 42.7 bits (99), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 11/117 (9%)

Query: 17  KLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNIS 76
           KL    +   ++ LT  A+R L LL +     + +       W++ G++   ++L Q IS
Sbjct: 19  KLSDAESDHESLTLTPTANRLLELLSKHHGTPMERDVLLMEGWDKFGLKGSYSSLNQYIS 78

Query: 77  IIRR---GFRAVGDTTHSLIATVPRRGFKIHNDINIQNH----VINSSTDAHTHNAP 126
            +R+    F  V D    +I T+P+ GF ++N+  I+N     +  S + A  H+AP
Sbjct: 79  QLRKTLHKFTGVDD----IILTIPKVGFMLNNEFPIKNMDPEPIAVSESTAKAHHAP 131


>UniRef50_D1RYQ0 Transcriptional regulator, CadC n=1 Tax=Serratia odorifera 4Rx13
           RepID=D1RYQ0_SEROD
          Length = 258

 Score = 42.4 bits (98), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 104/243 (42%), Gaps = 42/243 (17%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN  I F  +   +  + +    V+LT    R LSLL++    ++ ++   +  W+
Sbjct: 1   MKFIINKRIIFHEDKSSIELLDDTIEPVMLTATLCRVLSLLVKNNNLLLTREFLLSNGWD 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND-INIQNHVINSSTD 119
           E G     + L   IS+IR+ F + G++   +I TVPR+GF    D +N  +    SS  
Sbjct: 61  EYGKSSSHSNLNNYISMIRKIFNSFGES--EIIVTVPRQGFMFSADEVNTVDG--ESSLS 116

Query: 120 AHTHNAP-PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178
           + + + P PA    A  K    G  +             ++L+A  I   +AY  ++  Q
Sbjct: 117 SVSRDLPAPA----AAIKWKPAGLVS-------------LVLAAMAILMVAAYPFFDRYQ 159

Query: 179 PKPFFKDYKTVAEINGCHFNV---------TEDTIDGLKEFDKYKTRILDSGINCKKHPW 229
           P      +  + +I+ C   V         T+D      E +K K  I  +  NCK    
Sbjct: 160 P----VKHSEIGKIDHCSVEVLTTSHYVKHTDD------ELEKIKPLIETARFNCKVPAT 209

Query: 230 LYF 232
           +Y+
Sbjct: 210 IYY 212


>UniRef50_C4K826 Putative regulatory membrane protein n=1 Tax=Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)
           RepID=C4K826_HAMD5
          Length = 137

 Score = 42.4 bits (98), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 8/91 (8%)

Query: 11  FWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNT 70
           F P+ R    +      + +    S  L LL + +P+ +++++   ++W +    V  NT
Sbjct: 11  FIPKTR---VIKQEGREIKIRNKESELLFLLCKKYPNHISREEIEKQIWTQ--TYVTDNT 65

Query: 71  LYQNISIIRRGFRAVGDTTHSLIATVPRRGF 101
           L Q IS +R G   + D  H +I T+P++G+
Sbjct: 66  LTQTISNLRNG---LNDKKHEIIITIPKKGY 93


>UniRef50_B6XAC7 Putative uncharacterized protein n=2 Tax=Providencia
           RepID=B6XAC7_9ENTR
          Length = 272

 Score = 41.6 bits (96), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 60/254 (23%), Positives = 109/254 (42%), Gaps = 44/254 (17%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++IN+ I  +  H+ L+   N D  + LTT  +R L +L++   +V+ ++   +RVW+
Sbjct: 1   MKYLINNII--YDSHQGLLYRDNIDDAIKLTTTLNRLLLVLVQNNGEVLDRETLLSRVWD 58

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E       N L  +IS++RR   +  +    +I T+P+ G K   D  +Q+     +   
Sbjct: 59  EHNQVASDNNLNSSISVLRRHLSSFFE--EEIITTIPKVGIKF--DAKLQSLSTKLNQKP 114

Query: 121 HTHNAP---------PAIKVNAGYKESIGGAKN---FNNKILKHIKSHLIMLSAFVIGAY 168
           H    P         P+I  N+  K+S+   +     NN+         I L+  VI  +
Sbjct: 115 HQEEQPNILLKESEQPSIIENSPKKQSLSVKEKSYILNNR--------YIELTLVVIIIF 166

Query: 169 SAYWLWNNNQPKPFF----KDYKTVAEINGC------HFNVTEDTIDGLKEFDKYKTRIL 218
              +L+     K +F     +Y  V  I+ C       ++  + T     +     TR+ 
Sbjct: 167 CLLYLF-----KSYFFATRTEYPEVGRIDQCSIRYINSYHKPDMTTINFTDLQNQLTRL- 220

Query: 219 DSGINCKKHPWLYF 232
              I+CKK   L++
Sbjct: 221 --NIDCKKPATLFY 232


>UniRef50_Q2S7R1 DNA-binding winged-HTH domains n=1 Tax=Hahella chejuensis KCTC 2396
           RepID=Q2S7R1_HAHCH
          Length = 706

 Score = 41.2 bits (95), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 11/123 (8%)

Query: 37  CLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATV 96
            L+LL+     VV  ++FF +VW  EG  V  N L ++I  +R  F    D +   IAT 
Sbjct: 62  VLALLIRHHDRVVTTEEFFDQVW--EGRFVGENVLKRSIFELRHIFE---DKSRDYIATA 116

Query: 97  PRRGFKIHNDINI------QNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKIL 150
           P+RG+++   + +      +   +     A    AP  + V+     +I  A  ++   L
Sbjct: 117 PKRGYRLKAAVALVRPDPPEPETMTPPASAEAEQAPSDVTVSPAPVATIPTASWYSRLDL 176

Query: 151 KHI 153
           K +
Sbjct: 177 KRL 179


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q46942 Uncharacterized protein yqeI n=36 Tax=Enterobact...   336   5e-91
UniRef50_B7LP57 Putative regulatory protein n=2 Tax=Enterobacter...   277   4e-73
UniRef50_B4SXG5 Transcriptional regulatory protein, C n=31 Tax=S...   269   7e-71
UniRef50_A6T554 Putative sensory transducer n=1 Tax=Klebsiella p...   260   2e-68
UniRef50_UPI0001826357 putative regulatory protein n=1 Tax=Enter...   219   9e-56
UniRef50_UPI000182700F transcriptional regulatory protein, C n=1...   211   2e-53
UniRef50_UPI0001C33D1D hypothetical protein CATC2_20487 n=1 Tax=...   202   1e-50
UniRef50_C4SC03 Transcriptional regulatory protein n=2 Tax=Yersi...   194   3e-48
UniRef50_C1MAT2 Predicted protein n=2 Tax=Citrobacter RepID=C1MA...   193   6e-48
UniRef50_C6UPQ2 Predicted protein n=12 Tax=Escherichia coli O157...   190   3e-47
UniRef50_B2VGK3 Putative transcriptional regulator n=1 Tax=Erwin...   190   7e-47
UniRef50_C4UJG3 Transcriptional regulator n=1 Tax=Yersinia rucke...   186   9e-46
UniRef50_C4SUH9 Putative uncharacterized protein n=1 Tax=Yersini...   178   2e-43
UniRef50_C1MDX4 Putative uncharacterized protein n=1 Tax=Citroba...   175   1e-42
UniRef50_C4SF84 DNA-binding winged-HTH domains n=1 Tax=Yersinia ...   169   1e-40
UniRef50_C7BJK4 Putative membrane protein n=1 Tax=Photorhabdus a...   163   6e-39
UniRef50_A8GJD8 Transcriptional regulator, CadC n=1 Tax=Serratia...   161   2e-38
UniRef50_Q2NSQ9 Putative uncharacterized protein n=1 Tax=Sodalis...   158   2e-37
UniRef50_C4UHM9 Transcriptional regulatory protein, C n=1 Tax=Ye...   156   7e-37
UniRef50_C4SV61 Putative uncharacterized protein n=1 Tax=Yersini...   156   7e-37
UniRef50_C4SZK7 Putative uncharacterized protein n=1 Tax=Yersini...   154   2e-36
UniRef50_A8GBW4 Transcriptional regulator, CadC n=1 Tax=Serratia...   151   3e-35
UniRef50_C4T6D4 DNA-binding winged-HTH domains n=1 Tax=Yersinia ...   144   2e-33
UniRef50_B5FBZ3 Toxin transcriptional activator ToxR n=3 Tax=Vib...   141   3e-32
UniRef50_A8GL29 Transcriptional regulator, CadC n=2 Tax=Serratia...   139   7e-32
UniRef50_C4T4W9 DNA-binding winged-HTH domains n=1 Tax=Yersinia ...   132   1e-29
UniRef50_P15795 Cholera toxin transcriptional activator n=121 Ta...   130   5e-29
UniRef50_B2D6Y9 ToxR n=2 Tax=Vibrio cholerae RepID=B2D6Y9_VIBCH       129   1e-28
UniRef50_B2VCE9 Probable transcriptional regulator n=1 Tax=Erwin...   128   2e-28
UniRef50_D2TAS4 Cholera toxin transcriptional activator n=2 Tax=...   128   2e-28
UniRef50_C5ZZN9 Putative uncharacterized protein n=1 Tax=Escheri...   127   3e-28
UniRef50_Q7VR33 Transcriptional regulatory protein, C terminal d...   127   3e-28
UniRef50_B2VGZ0 Transcriptional regulatory protein n=1 Tax=Erwin...   127   3e-28
UniRef50_D2YQP0 Transmembrane regulatory protein ToxR n=7 Tax=Vi...   127   3e-28
UniRef50_D2TQU5 Putative transcriptional regulator n=2 Tax=Enter...   127   4e-28
UniRef50_Q1Z5R8 Transcription activator ToxR n=4 Tax=Photobacter...   126   1e-27
UniRef50_A8AP73 Putative uncharacterized protein n=1 Tax=Citroba...   124   4e-27
UniRef50_D0YIE0 Transcriptional regulator, CadC n=6 Tax=Klebsiel...   123   7e-27
UniRef50_Q8D287 YqeI protein n=1 Tax=Wigglesworthia glossinidia ...   121   3e-26
UniRef50_D0ZEM9 Putative uncharacterized protein n=1 Tax=Edwards...   121   3e-26
UniRef50_Q9RHQ9 Transmembrane regulatory protein ToxR n=2 Tax=Gr...   121   3e-26
UniRef50_A8GL31 Transcriptional regulator, CadC n=1 Tax=Serratia...   119   7e-26
UniRef50_B4EUN0 Putative membrane protein n=2 Tax=Proteus mirabi...   117   3e-25
UniRef50_UPI00018266EF transcriptional regulator, CadC n=1 Tax=E...   117   3e-25
UniRef50_D0YZ11 Transcriptional activator ToxR n=1 Tax=Photobact...   116   1e-24
UniRef50_C4SAM2 Possible regulatory protein n=1 Tax=Yersinia mol...   113   6e-24
UniRef50_D2A9T6 Transcriptional regulator, CadC n=3 Tax=Shigella...   112   1e-23
UniRef50_B2Q575 Putative uncharacterized protein n=1 Tax=Provide...   110   6e-23
UniRef50_A7MIL4 Putative uncharacterized protein n=2 Tax=Cronoba...   103   6e-21
UniRef50_A1JPG4 Possible reguatory protein n=5 Tax=Yersinia RepI...   101   2e-20
UniRef50_B5F706 Putative uncharacterized protein n=20 Tax=Salmon...   101   2e-20
UniRef50_B4TIC0 Putative uncharacterized protein n=33 Tax=Entero...   101   3e-20
UniRef50_A6AKR5 Transcriptional regulatory protein, C n=3 Tax=Vi...    99   1e-19
UniRef50_B1JQB0 Transcriptional regulator, CadC n=18 Tax=Yersini...    98   3e-19
UniRef50_D1P736 Putative transcriptional regulator with C-, effe...    94   4e-18
UniRef50_D2A7F9 Membrane protein n=2 Tax=Shigella flexneri RepID...    91   4e-17
UniRef50_C4UIA8 Possible regulatory protein n=1 Tax=Yersinia ruc...    86   1e-15
UniRef50_B1J1E8 Two component transcriptional regulator, LuxR fa...    85   3e-15
UniRef50_A8GFV8 Transcriptional regulator, CadC n=1 Tax=Serratia...    76   1e-12
UniRef50_D1RR55 Transcriptional regulator, CadC n=1 Tax=Serratia...    74   5e-12

Sequences not found previously or not previously below threshold:

UniRef50_B3INB4 Transcriptional regulatory protein, C n=2 Tax=En...   135   1e-30
UniRef50_D1RYQ0 Transcriptional regulator, CadC n=1 Tax=Serratia...   119   9e-26
UniRef50_C9PH99 Putative uncharacterized protein n=1 Tax=Vibrio ...   117   3e-25
UniRef50_A0KHX7 Transcriptional regulatory protein, C terminal n...   107   5e-22
UniRef50_B6XAC7 Putative uncharacterized protein n=2 Tax=Provide...   105   1e-21
UniRef50_D2T558 Protein rcaC n=3 Tax=Erwinia RepID=D2T558_ERWPY        99   1e-19
UniRef50_C2LLY1 Regulatory protein n=9 Tax=Enterobacteriaceae Re...    98   3e-19
UniRef50_UPI000197C3BF transcriptional regulator, CadC n=1 Tax=P...    97   5e-19
UniRef50_B2VJM5 Probable transcriptional regulator n=1 Tax=Erwin...    97   6e-19
UniRef50_D0XI00 Putative uncharacterized protein n=1 Tax=Vibrio ...    94   6e-18
UniRef50_A6XSQ7 ToxR2 n=9 Tax=Vibrio RepID=A6XSQ7_VIBCH                94   6e-18
UniRef50_A9MR60 Putative uncharacterized protein n=11 Tax=Salmon...    92   2e-17
UniRef50_C9PHD6 Transcriptional activator ToxR n=1 Tax=Vibrio fu...    92   2e-17
UniRef50_A4XNQ3 Transcriptional regulator, CadC n=1 Tax=Pseudomo...    92   2e-17
UniRef50_A3USG7 Cholera toxin transcriptional activator n=1 Tax=...    91   3e-17
UniRef50_C9NME3 Putative transcriptional activator ToxR n=1 Tax=...    91   3e-17
UniRef50_C4U6Y3 Putative uncharacterized protein n=1 Tax=Yersini...    89   1e-16
UniRef50_A5L3N2 DNA-binding transcriptional activator n=2 Tax=Vi...    89   1e-16
UniRef50_D0I6A9 Putative transcriptional activator ToxR n=1 Tax=...    88   4e-16
UniRef50_D0XFV2 Putative uncharacterized protein n=1 Tax=Vibrio ...    86   1e-15
UniRef50_A3UR88 Putative transcriptional activator ToxR n=3 Tax=...    85   2e-15
UniRef50_Q15PB9 Lysine decarboxylase transcriptional regulator, ...    85   3e-15
UniRef50_C1M6R9 Predicted protein n=2 Tax=Citrobacter RepID=C1M6...    85   3e-15
UniRef50_C2HYC0 Transcriptional activator ToxR n=1 Tax=Vibrio ch...    85   3e-15
UniRef50_Q7BQU1 Sea17 n=1 Tax=Serratia entomophila RepID=Q7BQU1_...    84   3e-15
UniRef50_A1JQP0 Membrane protein n=15 Tax=Enterobacteriaceae Rep...    84   4e-15
UniRef50_Q1YZ13 Transcriptional activator CadC n=1 Tax=Photobact...    84   4e-15
UniRef50_Q5E5W5 Transcriptional regulatory protein n=2 Tax=Vibri...    84   5e-15
UniRef50_B9TBN5 Putative uncharacterized protein n=1 Tax=Ricinus...    84   5e-15
UniRef50_A4CYI6 Putative uncharacterized protein n=1 Tax=Synecho...    84   6e-15
UniRef50_Q2NVH3 Putative uncharacterized protein n=1 Tax=Sodalis...    82   2e-14
UniRef50_Q1ZVU4 Putative uncharacterized protein n=1 Tax=Photoba...    82   2e-14
UniRef50_C6D9U3 Transcriptional regulator, CadC n=5 Tax=Pectobac...    82   3e-14
UniRef50_Q2S7R1 DNA-binding winged-HTH domains n=1 Tax=Hahella c...    81   4e-14
UniRef50_B2VDV6 Putative transcriptional regulatory protein n=1 ...    80   7e-14
UniRef50_B5FHC5 Putative transcriptional regulator n=14 Tax=Salm...    80   9e-14
UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax...    79   1e-13
UniRef50_C9QE85 Putative uncharacterized protein n=1 Tax=Vibrio ...    79   1e-13
UniRef50_Q12IZ6 Transcriptional regulatory protein-like protein ...    79   1e-13
UniRef50_B8CR40 Transcriptional activator CadC n=1 Tax=Shewanell...    78   2e-13
UniRef50_A4EHZ3 Integral membrane protein-like n=1 Tax=Roseobact...    78   3e-13
UniRef50_D2T7N3 Probable regulatory protein embR n=3 Tax=Erwinia...    78   3e-13
UniRef50_C7BJM7 Putative uncharacterized protein n=1 Tax=Photorh...    78   3e-13
UniRef50_A6CY17 DNA-binding transcriptional activator n=2 Tax=Vi...    78   3e-13
UniRef50_Q1IKQ5 Lysine decarboxylase transcriptional regulator, ...    77   7e-13
UniRef50_A1S359 Putative transcriptional regulator, CadC n=1 Tax...    76   1e-12
UniRef50_C4K826 Putative regulatory membrane protein n=1 Tax=Can...    76   1e-12
UniRef50_Q12K29 Transcriptional regulatory protein-like protein ...    76   1e-12
UniRef50_D0X6S7 Putative uncharacterized protein n=1 Tax=Vibrio ...    76   2e-12
UniRef50_Q3JM80 Transcriptional regulatory component of sensory ...    75   2e-12
UniRef50_A5L7Z6 Putative uncharacterized protein n=1 Tax=Vibrion...    75   2e-12
UniRef50_A0KFN3 Transcriptional regulatory protein, C terminal n...    75   2e-12
UniRef50_Q1Z6E8 Transcriptional activator of cad operon n=1 Tax=...    75   3e-12
UniRef50_A6D0K2 Putative uncharacterized protein n=1 Tax=Vibrio ...    75   3e-12
UniRef50_B1KFP5 Transcriptional regulator, CadC n=1 Tax=Shewanel...    74   3e-12
UniRef50_Q1ZPU0 Putative uncharacterized protein n=7 Tax=Photoba...    74   3e-12
UniRef50_B2VID6 Putative uncharacterized protein n=1 Tax=Erwinia...    74   3e-12
UniRef50_Q12S47 Transcriptional regulatory protein-like protein ...    74   4e-12
UniRef50_B2JV11 Transcriptional regulator, winged helix family n...    74   4e-12
UniRef50_Q47YD8 Putative transcriptional regulator n=1 Tax=Colwe...    74   4e-12
UniRef50_D0FT15 Conserved uncharacterized protein n=1 Tax=Erwini...    74   4e-12
UniRef50_P23890 Transcriptional activator cadC n=99 Tax=Enteroba...    74   4e-12
UniRef50_B2JV05 Transcriptional regulator, winged helix family n...    73   7e-12
UniRef50_Q2C4S0 Putative uncharacterized protein n=1 Tax=Photoba...    73   9e-12
UniRef50_B4SI58 Transcriptional regulator domain protein n=3 Tax...    73   9e-12
UniRef50_C5EUU3 Two-component response regulator n=5 Tax=Bacteri...    73   9e-12
UniRef50_B1KK09 Transcriptional regulator, CadC n=1 Tax=Shewanel...    73   9e-12
UniRef50_Q2SHD7 Probable transcriptional regulator n=1 Tax=Hahel...    73   1e-11
UniRef50_A6U8S7 Transcriptional regulator, winged helix family n...    73   1e-11
UniRef50_A5VGJ6 Transcriptional regulator, CadC n=1 Tax=Sphingom...    73   1e-11
UniRef50_Q89V41 Bll1217 protein n=2 Tax=Bradyrhizobium japonicum...    73   1e-11
UniRef50_A8T8X6 Putative transcriptional regulator ToxR n=3 Tax=...    73   1e-11
UniRef50_B5R4U2 Possible transmembrane regulator n=37 Tax=Entero...    73   1e-11
UniRef50_B7VJ79 Transcriptional regulator n=6 Tax=Vibrionaceae R...    72   2e-11
UniRef50_A3CKZ7 Two-component response transcriptional regulator...    72   2e-11
UniRef50_Q1Z6V5 Putative uncharacterized protein n=1 Tax=Photoba...    72   2e-11
UniRef50_Q1MK68 Putative adenylate cyclase n=1 Tax=Rhizobium leg...    72   3e-11
UniRef50_B6EJP4 Putative uncharacterized protein n=1 Tax=Aliivib...    72   3e-11
UniRef50_B7VRN4 Putative uncharacterized protein n=2 Tax=Vibrio ...    71   3e-11
UniRef50_B3PJR7 Putative Transcriptional regulator CadC n=1 Tax=...    71   3e-11
UniRef50_A8AKG2 Putative uncharacterized protein n=2 Tax=Enterob...    71   3e-11
UniRef50_A3UTR1 Transcriptional regulator CadC n=1 Tax=Vibrio sp...    71   3e-11
UniRef50_Q988M4 Mll6677 protein n=1 Tax=Mesorhizobium loti RepID...    71   4e-11
UniRef50_D2M1X4 Two component transcriptional regulator, winged ...    71   4e-11
UniRef50_A4YSP3 Putative uncharacterized protein n=1 Tax=Bradyrh...    71   4e-11
UniRef50_Q1IIR6 Transcriptional regulatory protein-like n=1 Tax=...    71   5e-11
UniRef50_UPI00016A9165 transcriptional regulator, putative n=2 T...    71   5e-11
UniRef50_Q2C5Y8 Putative uncharacterized protein n=2 Tax=Photoba...    71   5e-11
UniRef50_C3NSU2 Transcriptional activator of cad operon n=39 Tax...    71   5e-11
UniRef50_Q7MF28 Putative uncharacterized protein VVA0492 n=1 Tax...    71   5e-11
UniRef50_A5P8P2 Transcription activator ToxR n=1 Tax=Erythrobact...    71   5e-11
UniRef50_A5KUS7 DNA-binding transcriptional activator n=1 Tax=Vi...    71   5e-11
UniRef50_A6F962 Putative uncharacterized protein n=1 Tax=Moritel...    71   5e-11
UniRef50_Q21GQ2 Transcriptional regulatory protein-like protein ...    71   5e-11
UniRef50_A7MRS6 Putative uncharacterized protein n=1 Tax=Vibrio ...    70   6e-11
UniRef50_C0Q6W1 Possible transmembrane regulator n=32 Tax=Entero...    70   8e-11
UniRef50_A8SVV6 Putative uncharacterized protein n=1 Tax=Coproco...    70   9e-11
UniRef50_A4FNN5 Response regulator, two-component system n=12 Ta...    70   9e-11
UniRef50_Q1IIZ5 Transcriptional regulatory protein-like n=1 Tax=...    70   1e-10
UniRef50_A4SQG5 Transcriptional activator CadC n=2 Tax=Aeromonas...    70   1e-10
UniRef50_Q1IHU2 Lysine decarboxylase transcriptional regulator, ...    70   1e-10
UniRef50_C5B7S6 Transcriptional activator CadC n=2 Tax=Enterobac...    69   1e-10
UniRef50_C9QI52 Cholera toxin transcriptional activator n=1 Tax=...    69   1e-10
UniRef50_C7E4R8 Transcriptional regulator n=1 Tax=Pantoea stewar...    69   1e-10
UniRef50_Q1MMK4 Putative transcriptional regulator n=1 Tax=Rhizo...    69   1e-10
UniRef50_Q2C702 Putative uncharacterized protein n=1 Tax=Photoba...    69   1e-10
UniRef50_B8CUZ5 Transcriptional regulatory protein n=1 Tax=Shewa...    69   1e-10
UniRef50_A3JJ41 Two component Transcriptional regulator, Winged ...    69   1e-10
UniRef50_D0YXS7 Putative uncharacterized protein n=1 Tax=Photoba...    69   1e-10
UniRef50_Q1ZPR1 Transcriptional activator CadC n=1 Tax=Photobact...    69   2e-10
UniRef50_C7RA75 Transcriptional regulator, CadC n=1 Tax=Kangiell...    69   2e-10
UniRef50_C9PL80 Putative uncharacterized protein n=1 Tax=Vibrio ...    69   2e-10
UniRef50_B1KKU4 Transcriptional regulator, CadC n=1 Tax=Shewanel...    69   2e-10
UniRef50_C9NXT9 Cholera toxin transcriptional activator n=2 Tax=...    69   2e-10
UniRef50_A5L317 Putative uncharacterized protein n=1 Tax=Vibrion...    68   3e-10
UniRef50_C9B1W4 DNA binding response regulator n=4 Tax=Enterococ...    68   3e-10
UniRef50_B1KAJ7 Transcriptional regulator, winged helix family n...    68   3e-10
UniRef50_A3QBG0 Transcriptional regulator, CadC n=1 Tax=Shewanel...    68   3e-10
UniRef50_A6ENM5 Two-component system response regulator n=1 Tax=...    68   3e-10
UniRef50_A6UHF5 Transcriptional regulator domain protein n=13 Ta...    68   3e-10
UniRef50_C9Y6H6 Putative uncharacterized protein n=1 Tax=Curviba...    68   3e-10
UniRef50_D1TLX7 Transcriptional regulator, winged helix family n...    68   3e-10
UniRef50_B6EKJ8 Putative transcriptional regulator n=1 Tax=Aliiv...    68   3e-10
UniRef50_Q2BXY4 Putative uncharacterized protein n=2 Tax=Photoba...    68   4e-10
UniRef50_D2T5X7 Uncharacterized protein yqeI n=2 Tax=Erwinia pyr...    68   4e-10
UniRef50_Q142F7 Lysine decarboxylase transcriptional regulator, ...    68   4e-10
UniRef50_Q6GZK0 Cad operon transcriptional activator (Fragment) ...    68   4e-10
UniRef50_A3W8K2 Putative uncharacterized protein n=1 Tax=Roseova...    68   4e-10
UniRef50_A1SYN7 Cholera toxin transcriptional activator-like pro...    68   5e-10
UniRef50_A5ED47 Transcriptional regulator n=1 Tax=Bradyrhizobium...    67   6e-10
UniRef50_Q182M4 Two-component response regulator n=14 Tax=Clostr...    67   7e-10
UniRef50_A7B4Z9 Putative uncharacterized protein n=2 Tax=Ruminoc...    67   7e-10
UniRef50_Q2T8V0 Transcriptional regulator, putative n=9 Tax=pseu...    67   7e-10
UniRef50_Q39G50 Transcriptional regulator, winged helix family n...    67   8e-10
UniRef50_Q987X1 Transcriptional regulator n=1 Tax=Mesorhizobium ...    67   8e-10
UniRef50_A6CVT0 Putative uncharacterized protein n=1 Tax=Vibrio ...    67   8e-10
UniRef50_B2T985 Transcriptional regulator, winged helix family n...    67   9e-10
UniRef50_A4CDM5 Putative transcriptional regulator n=1 Tax=Pseud...    66   9e-10
UniRef50_Q67JF4 Two-component response regulator n=1 Tax=Symbiob...    66   9e-10
UniRef50_B8CQV8 Transcriptional regulatory protein n=1 Tax=Shewa...    66   9e-10
UniRef50_B6FSP5 Putative uncharacterized protein n=1 Tax=Clostri...    66   1e-09
UniRef50_C6LC42 DNA-binding response regulator RegX3 n=3 Tax=Clo...    66   1e-09
UniRef50_B1KWY3 DNA-binding response regulator n=33 Tax=Firmicut...    66   1e-09
UniRef50_Q3KEV5 Putative transcriptional regulator n=2 Tax=Pseud...    66   1e-09
UniRef50_UPI0001B9ECAC two component transcriptional regulator, ...    66   1e-09
UniRef50_B8CQQ2 Transcriptional regulatory protein n=1 Tax=Shewa...    66   1e-09
UniRef50_C9XSJ2 Two-component response regulator n=15 Tax=Clostr...    66   1e-09
UniRef50_A4X1M5 Two component transcriptional regulator, winged ...    66   1e-09
UniRef50_C8W7R9 Two component transcriptional regulator, winged ...    66   1e-09
UniRef50_B5WFU1 Transcriptional regulator, winged helix family n...    66   2e-09
UniRef50_A5N5X6 Transcriptional regulator n=5 Tax=Clostridium Re...    66   2e-09
UniRef50_C5EI97 Response regulator receiver protein n=8 Tax=Bact...    66   2e-09
UniRef50_B1Y588 Transcriptional regulator domain protein n=1 Tax...    66   2e-09
UniRef50_A6FDL9 Putative uncharacterized protein n=1 Tax=Moritel...    66   2e-09
UniRef50_B2Q5H8 Putative uncharacterized protein n=1 Tax=Provide...    66   2e-09
UniRef50_A0KMK1 Transcriptional regulatory protein, C terminal n...    66   2e-09
UniRef50_A6TN88 Two component transcriptional regulator, winged ...    66   2e-09
UniRef50_Q5E341 DNA-binding transcriptional activator CadC n=9 T...    65   2e-09
UniRef50_C0CI50 Putative uncharacterized protein n=1 Tax=Blautia...    65   2e-09
UniRef50_C6XRJ0 Transcriptional regulator, CadC n=1 Tax=Hirschia...    65   2e-09
UniRef50_A4C7M7 TolB domain protein n=1 Tax=Pseudoalteromonas tu...    65   2e-09
UniRef50_Q5LZ35 Response regulator (Homolog to RR01Spn & Sth) n=...    65   2e-09
UniRef50_C9A7F3 DNA binding response regulator n=4 Tax=Enterococ...    65   2e-09
UniRef50_B8KCT7 Transcriptional regulatory C terminal domain pro...    65   2e-09
UniRef50_Q0ANH0 Lysine decarboxylase transcriptional regulator, ...    65   2e-09
UniRef50_Q03AM3 DNA-binding response regulator, OmpR family (Rec...    65   3e-09
UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC...    65   3e-09
UniRef50_A4CDV0 Putative transcriptional regulator n=1 Tax=Pseud...    65   3e-09
UniRef50_C9QI56 Cholera toxin transcriptional activator n=2 Tax=...    65   3e-09
UniRef50_Q9RFS1 Transmembrane regulatory protein ToxR (Fragment)...    65   3e-09
UniRef50_A2PNS6 Putative transcriptional regulator ToxR n=1 Tax=...    64   3e-09
UniRef50_Q01QR8 Transcriptional regulator, CadC n=1 Tax=Candidat...    64   4e-09
UniRef50_C4Z6V6 Two-component system, OmpR family, response regu...    64   4e-09
UniRef50_Q1YYT7 Putative uncharacterized protein n=3 Tax=Photoba...    64   5e-09
UniRef50_B1T3M3 Transcriptional regulator, winged helix family n...    64   5e-09
UniRef50_C5AMC0 Transcriptional regulator, winged helix family p...    64   5e-09
UniRef50_C6AVM9 Response regulator receiver protein n=1 Tax=Rhiz...    64   5e-09
UniRef50_B2SNG2 Transcriptional regulatory protein, C terminal n...    64   5e-09
UniRef50_A6Q830 Two-component response regulator n=5 Tax=Epsilon...    64   6e-09
UniRef50_A3WEA4 Adenylate cyclase n=1 Tax=Erythrobacter sp. NAP1...    64   6e-09
UniRef50_A4C973 Putative transcriptional regulator n=1 Tax=Pseud...    64   6e-09
UniRef50_A8H9X2 Transcriptional regulator, CadC n=2 Tax=Shewanel...    64   7e-09
UniRef50_A1TS46 Transcriptional regulator domain protein n=2 Tax...    64   7e-09
UniRef50_C8WHB5 Two component transcriptional regulator, winged ...    63   7e-09
UniRef50_C4U9W3 Transcriptional regulator n=1 Tax=Yersinia aldov...    63   8e-09
UniRef50_B1LHR8 Lateral flagellar transmembrane regulator LafZ n...    63   8e-09
UniRef50_A8UMD4 Two-component system response regulator n=2 Tax=...    63   8e-09
UniRef50_C6IXU0 Transcriptional regulator domain-containing prot...    63   8e-09
UniRef50_C7R8I4 Transcriptional regulator, CadC n=1 Tax=Kangiell...    63   9e-09
UniRef50_UPI00016A77BF transcriptional regulator, putative n=1 T...    63   9e-09

>UniRef50_Q46942 Uncharacterized protein yqeI n=36 Tax=Enterobacteriaceae
           RepID=YQEI_ECOLI
          Length = 269

 Score =  336 bits (861), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 269/269 (100%), Positives = 269/269 (100%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE
Sbjct: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA
Sbjct: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
           HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK
Sbjct: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240
           PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG
Sbjct: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240

Query: 241 MIVMACNKNYNQHEVANCLTLSYREVNRD 269
           MIVMACNKNYNQHEVANCLTLSYREVNRD
Sbjct: 241 MIVMACNKNYNQHEVANCLTLSYREVNRD 269


>UniRef50_B7LP57 Putative regulatory protein n=2 Tax=Enterobacteriaceae
           RepID=B7LP57_ESCF3
          Length = 307

 Score =  277 bits (707), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 128/268 (47%), Positives = 176/268 (65%), Gaps = 7/268 (2%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           MYWIIN+ IEF P  +KLIS  N +LNVVLT+PASRCL LLLEA PDVV+QQ+ F +VWE
Sbjct: 40  MYWIINEFIEFRPASKKLISRRNPELNVVLTSPASRCLLLLLEASPDVVSQQELFKKVWE 99

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           +EGM VPTNTLYQNISI+RRG +AVG+T  +LIAT+PR+GFKI   + I    +  ++D 
Sbjct: 100 DEGMYVPTNTLYQNISIVRRGLKAVGETEQTLIATIPRKGFKIEQGVKI----VRMASDE 155

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNN---KILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177
                    +     +E +            ++  +    IML AF++GA   ++ W++ 
Sbjct: 156 LFPEEEQEEEQTGNAEELLLPVNEHQQPRISLMSRLSLVFIMLLAFIVGATGMHFYWHSG 215

Query: 178 QPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKS 237
           +  PFF DYK + + NGCHF V +D+ DG   F + KT I  +G++CKK+PW+Y PL+K+
Sbjct: 216 ETTPFFADYKLLEQENGCHFYVKDDSHDGDNNFARIKTLITRTGLDCKKYPWVYLPLSKT 275

Query: 238 SPGMIVMACNKNYNQHEVANCLTLSYRE 265
            PG+ V+ C K+Y  H V  C+TLS+RE
Sbjct: 276 DPGLAVLVCKKDYLVHSVPGCMTLSFRE 303


>UniRef50_B4SXG5 Transcriptional regulatory protein, C n=31 Tax=Salmonella enterica
           RepID=B4SXG5_SALNS
          Length = 254

 Score =  269 bits (687), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 109/268 (40%), Positives = 143/268 (53%), Gaps = 15/268 (5%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M WIINDNIEF PE  +L S+   DLN++LTTPASRCL LLLE  P VV+QQ FF +VWE
Sbjct: 1   MLWIINDNIEFNPEMNRLASLSRPDLNIILTTPASRCLRLLLENAPSVVSQQTFFQKVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E+GM V  NTLYQNISIIRRG R VG+   +LI TVPRRGF+I   ++I     + +   
Sbjct: 61  EDGMVVSANTLYQNISIIRRGLRTVGENEDTLIITVPRRGFQIEPGVSIMTIRKDFAQAI 120

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                 P                  + +  KH    L M   F +G       W     K
Sbjct: 121 EKKGETP---------------PRMSGRWFKHYVPVLWMTGTFAVGILLGTISWQTVPDK 165

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240
            F+  Y  V    GCHF    + I+    F  YK+ IL +G++C+K+PW+YFP +  +P 
Sbjct: 166 DFYDRYTLVETTQGCHFFSRNEDIESGSRFASYKSMILKTGMDCQKYPWVYFPSSSRTPA 225

Query: 241 MIVMACNKNYNQHEVANCLTLSYREVNR 268
           +  + C + Y       C+TL +R V  
Sbjct: 226 VTALICQQPYKTRGDTGCVTLFFRGVTH 253


>UniRef50_A6T554 Putative sensory transducer n=1 Tax=Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578 RepID=A6T554_KLEP7
          Length = 274

 Score =  260 bits (665), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 120/281 (42%), Positives = 173/281 (61%), Gaps = 25/281 (8%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           MYWIIN NIEFWPE+++LIS+ N   +V LT PAS CL LLLEA P++V+QQ FF +VWE
Sbjct: 1   MYWIINKNIEFWPENKRLISLKNPAQSVTLTAPASHCLVLLLEATPELVSQQVFFKKVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ---------- 110
           +EG+ VP NTLYQNISI+RRG R VG+T +S++ TVPR+GF I+ ++N++          
Sbjct: 61  DEGILVPANTLYQNISIVRRGLRDVGETDNSIVVTVPRKGFHINPNVNVERMDKKPLNSE 120

Query: 111 --NHVINSSTDAHTHNAP---PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVI 165
             N +   S D      P   P   V    +++IG              + LIML + + 
Sbjct: 121 SYNDITIISQDDVAEKNPTTEPGDIVQTATRKNIGAKAT----------TFLIMLLSLLA 170

Query: 166 GAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCK 225
           G  S +++W+ +  KPFF  Y  V    GCHF   +D    + +F+ YK+ I  SG++CK
Sbjct: 171 GCLSFHYIWHFHDEKPFFSSYTLVENDRGCHFYTKDDNHAKVDKFNYYKSLIFKSGLDCK 230

Query: 226 KHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSYREV 266
           K+P++YF +++ SPG IV  C K+Y++   A C+TLS+R +
Sbjct: 231 KYPFVYFSMSQMSPGFIVFICRKSYSEKVSAGCVTLSFRGI 271


>UniRef50_UPI0001826357 putative regulatory protein n=1 Tax=Enterobacter cancerogenus ATCC
           35316 RepID=UPI0001826357
          Length = 265

 Score =  219 bits (557), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 74/267 (27%), Positives = 123/267 (46%), Gaps = 16/267 (5%)

Query: 3   WIINDNIEFWPEHRKLISVHN-ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
           ++IND++ F P+ R+L       D  V+L  P S CL LLLE   +V+ Q+  F+ VWE+
Sbjct: 5   FLINDSVLFEPDKRRLCPRDGYPDRAVLLHGPVSECLLLLLEHNGEVLTQRYLFSAVWEK 64

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---IQNHVINSST 118
           +G  V TN LYQ I+ IR+  ++VG    +++ TVP+ GFK    +    ++  ++  +T
Sbjct: 65  QGAIVTTNALYQTIASIRKALKSVG-LAENIVQTVPKEGFKAVAALQSGTLEEFILPVAT 123

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178
                  P   K              F++KI   I + L ++S FV        L   + 
Sbjct: 124 AP-KDGQPEEEKAYLPAPVVRPRKSLFSSKIAYGIAALLFLVSCFV----LYQQLKPGDA 178

Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSS 238
           P   F DY  +  + GC    +    D ++  +K+ + +    + C     +Y  L    
Sbjct: 179 P---FADYHFIGNVEGCDVYSS--LHDKMQSQNKFTSLVKRYPVQCSAGGRVYITLNHYQ 233

Query: 239 PGMIVMACNKNYNQHEVANCLTLSYRE 265
            G  V+ C+K  +    A C ++ YRE
Sbjct: 234 QGTSVIVCDKQADLAG-AQCESILYRE 259


>UniRef50_UPI000182700F transcriptional regulatory protein, C n=1 Tax=Enterobacter
           cancerogenus ATCC 35316 RepID=UPI000182700F
          Length = 269

 Score =  211 bits (537), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 76/273 (27%), Positives = 118/273 (43%), Gaps = 18/273 (6%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
           ++IIN+ +EF P    L  ++N D  VVL +PA RCL LL+E    +V QQDF   VW+ 
Sbjct: 4   HYIINNIVEFHPAASTLRDINNPDRVVVLNSPAGRCLLLLIERAGSIVTQQDFLDIVWQR 63

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
            GM V  NT YQNISI+R+G + +G      I T+PR G  + +D  I   VI       
Sbjct: 64  RGMLVSPNTYYQNISILRKGLKKIGFDV-DPIVTIPRIGLTLASDTQI---VIKEPATPA 119

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLW------- 174
              A P   V     +     +   N + +  +   +  + ++ G      +        
Sbjct: 120 PEMAVPETAVQQDTADLRLNEEPGENALPE--RDSRLARARWLAGMLMILLVLLMSVGII 177

Query: 175 --NNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYF 232
             +N +   F +DY     I  CH  + +  I    E  K    +      C  +PW+Y 
Sbjct: 178 GHSNARENRFIEDYHFATTIGACHVWLAKG-IQTQSERAKALAYVDQFKAECADYPWIYI 236

Query: 233 PLAKSSPGMIVMACNKNYNQHEVANCLTLSYRE 265
              +  P   V+ C+K+    E   C++  + E
Sbjct: 237 SWYELLPRASVIRCDKSMK--EPNRCISDYFIE 267


>UniRef50_UPI0001C33D1D hypothetical protein CATC2_20487 n=1 Tax=Citrobacter youngae ATCC
           29220 RepID=UPI0001C33D1D
          Length = 257

 Score =  202 bits (514), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 103/266 (38%), Gaps = 20/266 (7%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++IN  +EF P+++ L++       + L  PAS C   L+    D+V+Q    T  W E 
Sbjct: 2   YLINQLVEFNPDNKSLVNRQTG-RTIQLQLPASLCFLYLITHASDIVSQNTLMTVGWGER 60

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
                 NT YQ I  +R     VG      + T+ RRG +++ +  ++     + TD  +
Sbjct: 61  NNVTTANTFYQAILTLRNALADVG-LPRDTVKTISRRGLRLNENTQVE-----AITDLQS 114

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL-WNNNQP-K 180
             +P ++       + I  A     +    I    I+ S  ++ A    WL W   +P  
Sbjct: 115 DVSPLSVIEERAPAKIIPTAPQQPTQ----IAWWNILFSVGIVIATLVIWLVWYQTRPVM 170

Query: 181 PFFKDYKTVAEI---NGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKS 237
           PF K      +I     C    + +  D    F+  +         C+ +  ++      
Sbjct: 171 PFSKFVSVSMQIPSRQNCKIYYSPNEYDQQGYFNLMQLH----PFLCENNKHVFLTGYLK 226

Query: 238 SPGMIVMACNKNYNQHEVANCLTLSY 263
           +  M+   C+K+      A C T  Y
Sbjct: 227 AERMVAFVCDKDARTDAHAFCTTHYY 252


>UniRef50_C4SC03 Transcriptional regulatory protein n=2 Tax=Yersinia
           RepID=C4SC03_YERMO
          Length = 281

 Score =  194 bits (492), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 64/272 (23%), Positives = 115/272 (42%), Gaps = 15/272 (5%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            +IIN  + F  +  +L  +      + L  P SRCL LLL+    V++Q +F   VWE 
Sbjct: 7   KFIINGKVCFLSDEHRLEPLGEQGSAISLNVPVSRCLLLLLQRKGSVISQSEFVYEVWES 66

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
           +G     NT +QNI ++R+  +  G    S+I TVP+ G +    +   N   + ST   
Sbjct: 67  KGQFANANTYFQNIHLLRKALKTSG-IEESIIKTVPKEGIRFTGTVTYLNESNSESTAEL 125

Query: 122 THNAPPAIKVNAGYKE----------SIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171
           T N    I   A   +              A  F+++ + +IK   ++    +       
Sbjct: 126 TENETRNIANEASADKQAPDVIDVKMQPPFAPFFSSQKMLYIKIFFVLGLLSIFILLLLN 185

Query: 172 WLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLY 231
           +  + N+   FF +Y+ + E+N C    +  +I  L    +Y   + +   +C+     Y
Sbjct: 186 FHKDTNKNTDFFSNYQLIGEVNQCKVYASNTSI--LWPRSEYLDFVKNKNTSCQPGQVAY 243

Query: 232 FPLAKSSPGMIVMACNKNYNQHEVANCLTLSY 263
             +       ++  C+K+ +    A+CLT  Y
Sbjct: 244 IAMNIFRTRALIHICDKSVSN--TASCLTKLY 273


>UniRef50_C1MAT2 Predicted protein n=2 Tax=Citrobacter RepID=C1MAT2_9ENTR
          Length = 261

 Score =  193 bits (490), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 112/262 (42%), Gaps = 15/262 (5%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++I + I F P  + L  V + +  + L   AS CL LL++    VV+Q +     W + 
Sbjct: 9   YLIENRIIFTPATQCLARVDHPNQRIKLKHSASLCLLLLIQHRGQVVSQNELLEFGWGKN 68

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
             +V  N  YQ+I  +R+    + +    LI T+PR+G  I  + +IQ   +  + + ++
Sbjct: 69  HRQVSFNAFYQSILSLRKSLLQL-ELEQPLITTIPRKGLIIQEEFDIQ---VIETPEENS 124

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
            +A  ++  +A  +E +  A      ++   ++ ++ L+  +       W  +++    +
Sbjct: 125 ASAEESLAPDATIEEFL--ADTPRQPLITAAETVMLALTLIICVLILYPWQASDD----Y 178

Query: 183 FKDYKTVAEI-NGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGM 241
           F  Y T  +   GC +    D       F ++   I  +   C+ H ++Y      S  +
Sbjct: 179 FSGYITADKAPTGCQYYFNNDA----SNFTRHTAFIDKNPGLCQSHKFIYITTYPESKKL 234

Query: 242 IVMACNKNYNQHEVANCLTLSY 263
            V+ C       +   C ++ Y
Sbjct: 235 SVLVCRSPIKARQENACQSVYY 256


>UniRef50_C6UPQ2 Predicted protein n=12 Tax=Escherichia coli O157:H7
           RepID=C6UPQ2_ECO5T
          Length = 270

 Score =  190 bits (483), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 88/276 (31%), Positives = 129/276 (46%), Gaps = 20/276 (7%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIND + F     KL S+  ++  V+LT PA +CL LLL+    VV+   FF +VW 
Sbjct: 1   MIYIINDEVRFNSSSNKLTSLLTSEE-VILTYPAGKCLKLLLDNAYSVVSHNQFFEKVWS 59

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTT--HSLIATVPRRGFKIHNDINIQNHVINSST 118
           +    V TNTLYQNIS+IRR FR +   T  + +I TVPR+GFKI+ +I+I     N   
Sbjct: 60  DSSADVATNTLYQNISMIRRSFREISSATIFNDVIRTVPRKGFKINEEISITVLDNN--- 116

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFV---IGAYSAYWLWN 175
             H  N     + N  + E+I   KN   K +   K+ L+++  F    I   S+Y+   
Sbjct: 117 --HNENESVESEENGTHTENIN--KNHIAKGIFTTKNTLLIVCFFAAWGIVYISSYFFDM 172

Query: 176 NNQPKPF-------FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHP 228
             Q K         F +Y       GC +       + +        ++    INCK HP
Sbjct: 173 AFQSKSHTIKKIDAFSNYAQHPTQEGCSYFYDNKYFNSVDMLSPIIEKLQKMEINCKIHP 232

Query: 229 WLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSYR 264
           ++Y     S  G     C++  N     NC +L Y+
Sbjct: 233 YIYIATNDSMSGFYAFTCSQMLNSESPNNCNSLYYK 268


>UniRef50_B2VGK3 Putative transcriptional regulator n=1 Tax=Erwinia tasmaniensis
           RepID=B2VGK3_ERWT9
          Length = 301

 Score =  190 bits (481), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 69/300 (23%), Positives = 117/300 (39%), Gaps = 47/300 (15%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
            +N+ + F P+ +++    N     V++  AS CL LL+E    +V  Q F+  VW   G
Sbjct: 15  TLNNFLIFEPDKKRITGRGNP---AVISASASLCLELLIENVGLLVTHQQFYDYVWRRFG 71

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
               + TLYQNIS +RR     G     +I T+PR+GF +    ++Q   ++S T   T 
Sbjct: 72  TEPASTTLYQNISALRRALNKAG-LQEDIIRTMPRKGFLLSPQTSVQRESLSSFTPVSTE 130

Query: 124 NA------------------PPAIKVNAGYKESIGGAKNFNNK----------ILKHIKS 155
                                  ++     +ES  G KNF              LK  K+
Sbjct: 131 PERANTLSAGGNEMPDPSPTDERMRTAQNKQESDSGNKNFLYSALTECHFFPAFLKSKKT 190

Query: 156 HLIMLSAFVIGAYSAYWL-----WNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEF 210
             +    F+   +S+++        N+    +  +YK      GC   +  +  DG    
Sbjct: 191 MAVTFMLFLALLFSSFFYIRAGLNYNDAVFVYSTNYK------GC---IIFNNADGWLGK 241

Query: 211 DKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSY-REVNRD 269
           D+ K  + +  I C    ++Y    K +  +    C    + H   NC +  Y + +N D
Sbjct: 242 DEVKKLVDEMKIKCSTTSYVYLTAFKHADSLSYFDCEHPLSGHVRTNCRSHYYVKNLNND 301


>UniRef50_C4UJG3 Transcriptional regulator n=1 Tax=Yersinia ruckeri ATCC 29473
           RepID=C4UJG3_YERRU
          Length = 262

 Score =  186 bits (471), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 109/264 (41%), Gaps = 20/264 (7%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + IN+++ F+PE   + S    +  + +  P S+   + +      V+Q + +T  W E 
Sbjct: 5   YNINNSVLFYPESGDIASSLTGN-TIKINMPTSQLFEVFITRMGVAVSQNELYTAAWGEN 63

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
            + V  NTLYQNIS++R+  +  G  + SL  T+  +GF I    ++  H +    D   
Sbjct: 64  SVNVTPNTLYQNISLLRKALQDSGIPSESL-KTLRGKGF-IFTVASVVEHCVEDIQDVKD 121

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP--- 179
               P       Y +             K I  + ++L++ +I      +    N P   
Sbjct: 122 SEITPEKSEPTHYGK-------------KTIAYYSMLLTSLIIVFLGVLFYDYKNIPWRV 168

Query: 180 KPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239
             + KD+  +++INGC           +    K    +      C+ +P++Y   ++   
Sbjct: 169 NNYPKDFVFISKINGCSIF-NSTEGKSIVNNQKINRLVKTLPAECESYPYVYISYSERHA 227

Query: 240 GMIVMACNKNYNQHEVANCLTLSY 263
            + +++C  + N  E  +C T  +
Sbjct: 228 TVSIISCRYDMNYTEQNDCKTEIF 251


>UniRef50_C4SUH9 Putative uncharacterized protein n=1 Tax=Yersinia frederiksenii
           ATCC 33641 RepID=C4SUH9_YERFR
          Length = 267

 Score =  178 bits (450), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 115/264 (43%), Gaps = 15/264 (5%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + INDNI F+PE   L S       + +  P ++ L   +     +++Q D ++  W + 
Sbjct: 5   YTINDNITFYPESGILSS-SLGGARIKINVPTAQLLEAFVNRVGLIISQSDLYSIAWGDN 63

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
           G+ V  NTLYQNIS++R+  + +G +  + I TV  +GF        +  +     D   
Sbjct: 64  GVNVTPNTLYQNISLLRKALQDIGLSGEA-ITTVRGKGFIFTVTKVTECEI---DIDPED 119

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP- 181
                   V     E +     +       I + +++ ++ +I   + ++  + + PK  
Sbjct: 120 DEIIIENIVPQQQDEKLVTKNKYK------IYNIVLLFASVLIFFGAVFYFIHKSIPKRI 173

Query: 182 --FFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239
             + K++  +++I+GC    T   +  L+  +K  T +    + C  +P++Y       P
Sbjct: 174 IDYPKNFTFLSKIDGCSIF-TSTELHNLESQEKVNTFLSGQSLECNNYPYIYLNYTIRHP 232

Query: 240 GMIVMACNKNYNQHEVANCLTLSY 263
            + V++C    N  +  NC T  +
Sbjct: 233 TISVISCEFEVNYSKKNNCRTEIF 256


>UniRef50_C1MDX4 Putative uncharacterized protein n=1 Tax=Citrobacter sp. 30_2
           RepID=C1MDX4_9ENTR
          Length = 251

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 97/260 (37%), Gaps = 20/260 (7%)

Query: 9   IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68
           +EF P+ + L++       + L  PAS C   L+    D+V+Q    T  W E      T
Sbjct: 2   VEFNPDSKSLVNRQTG-RAIQLQLPASLCFLYLITHASDIVSQNTLMTIGWGERNNVTTT 60

Query: 69  NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPA 128
           NT YQ I  +R     VG      + T+ RRG +++ +  ++   +       +  +PP 
Sbjct: 61  NTFYQAILTLRNALADVG-LPRDTVKTISRRGLRLNENTQVETITLQQ-----SEVSPPP 114

Query: 129 IKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL-WNNNQP-KPFFKDY 186
           +       + I        +I        ++ SA V+ A    WL W   +P  PF K  
Sbjct: 115 VIEEIPPAKIIPSTPQQTTQIP----WFEVLFSASVVIATLIIWLVWYQTRPVMPFSKFV 170

Query: 187 KTVAEI---NGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIV 243
           +   +      C    + +  D    F+  +         C+ +  ++      +  ++ 
Sbjct: 171 QASMQTPSRQNCKIYYSPNEHDQQGYFNLMQLH----PYLCENNKHVFLTGYSKAERIVA 226

Query: 244 MACNKNYNQHEVANCLTLSY 263
             C+K+      A C T  Y
Sbjct: 227 FVCDKDARVDANAFCTTHYY 246


>UniRef50_C4SF84 DNA-binding winged-HTH domains n=1 Tax=Yersinia mollaretii ATCC
           43969 RepID=C4SF84_YERMO
          Length = 276

 Score =  169 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/269 (20%), Positives = 105/269 (39%), Gaps = 27/269 (10%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN N+++      L    N    + LT   S  L LL++     +++    + +WE
Sbjct: 1   MEYIINGNVKYNSSDGTLFCPDNNIDMITLTRVTSELLLLLIKNNGAPLSRDTILSELWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN----- 115
           + G+   +N L   +S++R+     G T  +LI T+P+ GF    DI       +     
Sbjct: 61  KRGLTASSNNLNNYVSMLRKALAQCGYT--NLIVTIPKHGFLFEADITEMGEDNHLTRTD 118

Query: 116 ----SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171
                 T  H  + P A  ++  +K S+ G   F  ++   I    ++   F    Y+ +
Sbjct: 119 PKSVELTQRHEVDPPLASAISDHHKTSLSG--FFKGRVAVLILFFAVLTLLFSPSIYNYF 176

Query: 172 WLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFD---KYKTRILDSGINCKKHP 228
            L +             +  I+ C   + +DT   L   +     K  I    + C    
Sbjct: 177 RLQSLR---------TLLFNIDQCRIYLMDDTTRRLDSSNTISTIKMIINTGNLKCDSPA 227

Query: 229 WLYF--PLAKSSPGMIVMACNKNYNQHEV 255
            +Y+     K S G ++M    +Y  +++
Sbjct: 228 NVYYFADKKKDSSGHVIMTDMLSYCPYDI 256


>UniRef50_C7BJK4 Putative membrane protein n=1 Tax=Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949 RepID=C7BJK4_PHOAA
          Length = 312

 Score =  163 bits (412), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 101/243 (41%), Gaps = 16/243 (6%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++IN  + F P+ + L   +N    V L+ PASR    L++   + + ++D    VWE
Sbjct: 26  MKYVINIIVVFDPKEKTLALFNNPLNTVKLSNPASRLFLELIKNNGETIPREDLLKNVWE 85

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI----------- 109
           + G     + L   IS IR+   A   T  ++I T+P+ GF++  DI +           
Sbjct: 86  DYGFTGSNSNLNSYISEIRKNL-ACLSTDLTVIKTIPKVGFRLEADIQVSLQESPEEENN 144

Query: 110 -QNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY 168
               +I S +D ++ +     +V     E+    ++ NN + K +K+ + +   F+    
Sbjct: 145 ADTDIIISESDINSLHRKDRPRVEDLEGENRVLKEHRNNHVNKWLKARIFLGIVFIFLLL 204

Query: 169 SAYWLWNNNQPKPFFKD-YKTVAEINGCHFNVTEDT--IDGLKEFDKYKTRILDSGINCK 225
           S Y  + + +     ++ Y  + +   C     +           +  +  I +  I+C+
Sbjct: 205 SFYVFYLSKRTVEISQEHYSYLYKTGKCKVFSLDYKLGYSKATLREMAEQDISNEKIDCQ 264

Query: 226 KHP 228
              
Sbjct: 265 SVK 267


>UniRef50_A8GJD8 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568
           RepID=A8GJD8_SERP5
          Length = 267

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 95/237 (40%), Gaps = 15/237 (6%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN  +++      LI   N+   + LT  A+  L L +      + + D    +W 
Sbjct: 1   MEFIINRVLKYNSSDGTLICPDNSVDMITLTRVANELLFLFINNNHISLRRDDILNELWG 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ-NHVINSSTD 119
           + G+   +N L   +S++RR     G     LI T+P+ GF    D+ +   + ++  TD
Sbjct: 61  KRGLSASSNNLNNYVSMLRRALEQCGFAG--LITTIPKYGFIFEADVVVVATNALSEDTD 118

Query: 120 AHTHN-APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178
               N A  ++  N   K+     + F++  LK     ++++          Y+   +N+
Sbjct: 119 QTDENEALASLVFNNEEKKINPKVRYFSSVTLKTAFVFMVIIMMLFSSQIYDYFYLKSNR 178

Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFD---KYKTRILDSGINCKKHPWLYF 232
            + F         +  C F + +D I G  E D     K       INC     +Y+
Sbjct: 179 TEVF--------SMGKCTFYLIDDKIGGRVEEDVIHNMKVAAKKEKINCDVKSNVYY 227


>UniRef50_Q2NSQ9 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str.
           'morsitans' RepID=Q2NSQ9_SODGM
          Length = 270

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/279 (21%), Positives = 110/279 (39%), Gaps = 27/279 (9%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFP--DVVAQQDFFTRV 58
           M +IIN  + F      L  V +AD +V L+  A R L  L++     + V ++  F  V
Sbjct: 1   MKYIINSTVAFDTTEYLLTLVDDADTSVKLSNSAGRVLEELIQYRGTGEPVTREHLFASV 60

Query: 59  WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118
           W   G++     L Q +S+IR+G  ++G    S I T+P+RG K+++ + I     +   
Sbjct: 61  WSAHGLQPSNGNLNQQVSLIRKGLTSLG-LDASAIITIPKRGLKLNDQLVISTLEEDVFQ 119

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178
                         A       G KN N  +     + L+++   +    +  +  +++ 
Sbjct: 120 ATCIPAVNEFPMELAPPVMLSRGRKNINGAL-----TLLMVIVTLLTVIMAYIYYEDDDN 174

Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGIN---CKKHPWLYFPLA 235
            K +F      ++IN C    T   I GL++ D     +     N   CK +  + F   
Sbjct: 175 QKLYFS-----SQINSCKVY-TFHPIPGLEKEDYRLRIVEAMKGNVEKCKNNYIVIFSKT 228

Query: 236 KSSP---------GMIVMACNKNYNQHEVANCLTLSYRE 265
                           +  C K+ + H ++NCL   +  
Sbjct: 229 LIPDPLIQDNINVRTFMAKCRKDEDDH-ISNCLNFFFYN 266


>UniRef50_C4UHM9 Transcriptional regulatory protein, C n=1 Tax=Yersinia ruckeri ATCC
           29473 RepID=C4UHM9_YERRU
          Length = 300

 Score =  156 bits (394), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 126/298 (42%), Gaps = 43/298 (14%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           I N+ + +      L +++N    V LTTPA+ CL ++     +VV+Q+ FFT VWE  G
Sbjct: 6   IFNNKVVYDHAIAALYNINNKSEMVFLTTPANHCLLIITNNRHEVVSQRTFFTEVWENHG 65

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA--- 120
             + +NT YQNISIIRR F+ +G  T  +I TVPRRG +I ++I I +    S       
Sbjct: 66  APINSNTFYQNISIIRRAFKQLG-LTEDVIVTVPRRGVRIGSNIEISSFPPISGQTPESM 124

Query: 121 -----HTHNAPPAIKVNAGYKESIGGAKN-------------------FNNKILKHIKS- 155
                 +         +  Y+E +    +                    N+  L+ +K+ 
Sbjct: 125 VLIAKESAEVSKQDNEDTQYQEDVKNFTHNHSDNRIVEERGDFYYSGSNNSSFLRLVKTI 184

Query: 156 ---------HLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCH-FNVTEDTID 205
                     +I      I A+SA    +    K  F DYK+   +  C  F+     I+
Sbjct: 185 PSIWDVNYHIVIAFIFLAIMAFSASVFDSYFYSKSRFYDYKSSFLLEQCDVFSQISRDIE 244

Query: 206 GLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSY 263
             K  +     I  + I+C++   +YF    + P + ++ C+ +  +     C +  +
Sbjct: 245 IRKSVEH---MIKINNISCQEPKRVYFSSFPALPRLSLIVCDGDILKSG-TYCNSYYH 298


>UniRef50_C4SV61 Putative uncharacterized protein n=1 Tax=Yersinia frederiksenii
           ATCC 33641 RepID=C4SV61_YERFR
          Length = 258

 Score =  156 bits (394), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 110/264 (41%), Gaps = 25/264 (9%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++IN ++ F+P    + S+   +  V L +P ++ L   +      ++Q + +   W E+
Sbjct: 9   YVINGDVIFYPGSGIVSSLLTGN-TVKLNSPTAQLLEAFVSRVGITISQSELYNIAWGEK 67

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS---STD 119
           G  V  NTLYQNIS++R+  + VG T  S + TV  +GF       I+N   N    +  
Sbjct: 68  GSSVTPNTLYQNISLLRKALKDVGVTGES-VTTVRGKGFIFTMATVIENMTDNEIVKNIS 126

Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179
              ++     K+   Y   +GG               +++L  F I +   Y++   +  
Sbjct: 127 LECNDNKTKKKMIIVYSIIMGGC-------------FILILLYFFIKSQPGYFVARKSDG 173

Query: 180 KPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239
             F      + E    +++ + D    + + D +    L S   C+ +P+LY  L++   
Sbjct: 174 FSF----SHINEKCFIYYDNSNDMNSIIPDIDVFLEGTLSS---CQVYPYLYISLSELHS 226

Query: 240 GMIVMACNKNYNQHEVANCLTLSY 263
            + + +C      +    C T  +
Sbjct: 227 TISLTSCKNEIINNSKNVCKTELF 250


>UniRef50_C4SZK7 Putative uncharacterized protein n=1 Tax=Yersinia intermedia ATCC
           29909 RepID=C4SZK7_YERIN
          Length = 247

 Score =  154 bits (390), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 20/259 (7%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           IIN  + +   +  + +++  + +V L  P + CL +LL+ +P+V+ Q  FF + WE++G
Sbjct: 6   IINKIVAYDYNNAIIYNINKPEKSVSLYAPTNECLYILLDQYPNVIPQNYFFEQAWEKQG 65

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
           +    N  YQ+IS+IRR F  VG     +I T+PRRG  +  D+ I           H  
Sbjct: 66  LTTTNNNFYQHISMIRRAFEVVG-LNGDIILTLPRRGLSLSKDLEIT----------HEE 114

Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFF 183
                 K      E+   A   NN +L+   S  +++S  +I  +S       +  +   
Sbjct: 115 KKRQDKKEEIVIDETSNNA-TINNSMLR--ASLWVVVSILIITLFSILLYNKKSPYEKSI 171

Query: 184 KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIV 243
           ++Y  V +I  CH     +  D        K  I +  INC K   LY+          +
Sbjct: 172 ENYNHVEDIELCHLFSLSEGYD----VSNVKEIIKNEKINCNKVKNLYYTTYPIIKRESL 227

Query: 244 MACNKNYNQHEVANCLTLS 262
           + C+     +   NC++  
Sbjct: 228 IYCD--VLNNTPKNCISYL 244


>UniRef50_A8GBW4 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568
           RepID=A8GBW4_SERP5
          Length = 279

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 52/207 (25%), Positives = 96/207 (46%), Gaps = 14/207 (6%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M + +ND+I F  +   L     +D  + ++ P+ R L LL+    + V ++  F +VW+
Sbjct: 1   MKYRLNDHIIFDVDTGTLSLTELSDDPISISNPSKRLLLLLITHHGEAVGREVIFKKVWD 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ--NHVINSST 118
           + GM    N L Q +S +RR  + +G     +IATVP+ GF +  +I ++  +   NS T
Sbjct: 61  DYGMVSGNNNLNQCVSKLRRVIKNLG-IEEEVIATVPKVGFMLRYEIIVEHCDGPENSFT 119

Query: 119 DAHTHNAP-----PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL 173
           D  T   P     P I  +AG   S+G      ++    I S + +    ++ A S Y  
Sbjct: 120 DEETSVIPHASVQPEIASSAGKPGSVGTVYAGYSRRWWTIASIVALGVIMLVVAISCYLT 179

Query: 174 WNNNQPKPFFKDYKTVAEINGCHFNVT 200
            + ++ + +      + + N C   ++
Sbjct: 180 GSVSRQEIY------LGKANSCKVFMS 200


>UniRef50_C4T6D4 DNA-binding winged-HTH domains n=1 Tax=Yersinia intermedia ATCC
           29909 RepID=C4T6D4_YERIN
          Length = 290

 Score =  144 bits (364), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 96/284 (33%), Gaps = 25/284 (8%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +I+N  I F P  + L+ +++ +  V L+ PASR L   ++   + + +      VWE
Sbjct: 1   MKYILNLTIVFNPSEKILMELNDEERAVTLSNPASRLLLEFIKHQNEPIERDVLLKNVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI------ 114
           + G     + L   +S +R+   A G+    +I T+P+ GF+    I             
Sbjct: 61  DYGFTASNSNLNAYVSELRKALAAFGEDPQ-IITTIPKYGFQFTARIESVLSPTLPAPDN 119

Query: 115 --NSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIML--------SAFV 164
                 D        +  +                +++   + +L ML            
Sbjct: 120 GKEQDDDIAADTKEISTTIQPDTAPPHPPIAPLPQEVMAPGRKYLTMLRSKILLILVILS 179

Query: 165 IGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTRILDSGI 222
           + A +     N         +Y    EI+ C   + ++     G +  D  +  +    +
Sbjct: 180 VLATALKIYANWADVTIGKANYLLAGEIDQCQIFIQKNVAFPSGTETLDMARHDLRQRKV 239

Query: 223 NCKKHPW-LYFPL----AKSSPGMIVMACNKNYNQHEVANCLTL 261
           +C      +++       K +    +  C  +        C T+
Sbjct: 240 DCSVEKHSIFYTKGSDGYKINQLTFIGICAVDEQGR-YNECQTI 282


>UniRef50_B5FBZ3 Toxin transcriptional activator ToxR n=3 Tax=Vibrio fischeri
           RepID=B5FBZ3_VIBFM
          Length = 293

 Score =  141 bits (354), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 89/248 (35%), Gaps = 37/248 (14%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           II D   F P    LI   N D  + L    SR LSLL++    VV++ +    VW ++G
Sbjct: 9   IIGDRFLFDPNDNSLIDTLNDDEIIRLGGNESRVLSLLIQEPGKVVSRHELHEYVWRDQG 68

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI----------------HNDI 107
             V  ++L Q IS +R+  +         + TVP+RG++                   + 
Sbjct: 69  FEVDDSSLTQAISTLRKMLQDPTKLP-VYVKTVPKRGYQFISTAVAQVDPDQKIEAETEH 127

Query: 108 NIQNHVINSS---TDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIK--SHLIMLSA 162
           N++N  +N S   T  H  +A  A  V      +I      N+    H+     ++++ A
Sbjct: 128 NVENTPLNDSLNNTSVHQDDAQEAQTVAPQQNATIHQPSTANSAPQAHLSLLGTIMLIIA 187

Query: 163 FVIGAYSAYWLWNNNQPKPFFKDY---------------KTVAEINGCHFNVTEDTIDGL 207
           FV+   +       +       +Y               +    I  C         D L
Sbjct: 188 FVLPILAYVNHTPKSDAFVQVANYDNTPVFVPVNHPSIEQWKPLIEQCTNFYNSKHTDSL 247

Query: 208 KEFDKYKT 215
           K  +   T
Sbjct: 248 KPIEVIAT 255


>UniRef50_A8GL29 Transcriptional regulator, CadC n=2 Tax=Serratia RepID=A8GL29_SERP5
          Length = 255

 Score =  139 bits (351), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 93/265 (35%), Gaps = 12/265 (4%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++IN  I++      L ++ +    ++L  PA R LS+ +     ++ ++     VWE
Sbjct: 1   MIFVINKTIKYNEYEGTLENIDDPGNTILLVKPACRLLSIFVRNNDMLIKRKQLLDEVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           + G++   + L   IS +RR      +    LI T PR+GFK      I   ++    +A
Sbjct: 61  DYGLKATDSNLNNYISGLRRSLAKFDE--EELIITYPRQGFKF-----IAKKIVRQEANA 113

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                   +++         G K    +    +K   +   A +       +  +    +
Sbjct: 114 ILSETDSVVELEKKESIRPDGPKEGQRRAYSWLKKTALQKMAVITVILLLPFFLSMAYKQ 173

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240
               +   + +   C         +G++  +     ++ +  +C+    +Y+        
Sbjct: 174 IPISNITNLGQYKNCDIYSI--KYNGMQPKE--IEHVISNRYSCEDKANVYYYFNIKEKS 229

Query: 241 MIVMACNKNYNQ-HEVANCLTLSYR 264
           +   A    Y       +C     +
Sbjct: 230 VSSHASLIAYCPLDVTTSCEISYIK 254


>UniRef50_B3INB4 Transcriptional regulatory protein, C n=2 Tax=Enterobacteriaceae
           RepID=B3INB4_ECOLX
          Length = 270

 Score =  135 bits (340), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 106/272 (38%), Gaps = 9/272 (3%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++I   + +  +   ++     + ++ L+ PA R L  L+     ++ + D   +VWE
Sbjct: 1   MKYLIELTMLYEVDTGMIMINGEEESSIKLSNPAGRLLYELIINNGKILDRDDLIKKVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           + G+   + +L   IS IR+ FR +G     LI T+  +GF +   I          +  
Sbjct: 61  DHGLSGSSVSLNVAISEIRKAFRTLGCAPL-LIKTIRGKGFSLAAHIEHHTVRPPVVSTL 119

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
              +A  A    A  K++    +  +   L      L++++         +   +  +  
Sbjct: 120 SEQSASEAFDTLAHKKDADPPKQLISLHRLFISLCTLLLITVIGTAVLLLHQRDSYAESL 179

Query: 181 PFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTRILDSGINCK-KHPWLYFPLAKS 237
                Y  + +++ C   +  + +       F+  K  I    I+C+ +   +Y+   K 
Sbjct: 180 KDSDMY-LLGKVDRCTVYLINNNMYQPRQHHFNHVKEVIASQHIDCQHQVADVYYSRFKK 238

Query: 238 SP--GMIVMACNKNYNQHEVANCLTLSYREVN 267
           S      +  C +  +  +  NC++  YR + 
Sbjct: 239 SQIENYFLAICYQQDSIDDYKNCIS--YRRLT 268


>UniRef50_C4T4W9 DNA-binding winged-HTH domains n=1 Tax=Yersinia intermedia ATCC
           29909 RepID=C4T4W9_YERIN
          Length = 290

 Score =  132 bits (331), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 112/291 (38%), Gaps = 35/291 (12%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++IN  I F P  +KL+ +++ D+ V+L+ PA+R L   ++     + +      +WE
Sbjct: 1   MKYLINYTIFFKPSEKKLMILNDEDIFVILSNPATRLLLEFIKHRNKAIDRITLLKDIWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI-------QNHV 113
           + G     + L   +S +R+ F+A+G++   +I T+P+ GF+    +         +N  
Sbjct: 61  DYGFTASNSNLNTYVSELRKAFKALGESPQ-VILTIPKHGFQFVAHVESQMKDERQENDC 119

Query: 114 INSSTDA---------------HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLI 158
           +  + D                     P         KE+I    + N + ++     L+
Sbjct: 120 LIDTQDISDEKVKNLNFKREFNRDEKQPDIDVTPITGKENI----DSNAEKMEFSAKILL 175

Query: 159 MLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTR 216
           +L  F +   +    ++  +     K +    +I  C   V +++      +  +  K  
Sbjct: 176 ILVIFTVTITAFKIYYSCAEIIINKKSHVLAGKIGKCMLYVKKNSTYPPADQLINLVKND 235

Query: 217 ILDSGINCK--KHPWLYFPLAKSS---PGMIVMACNKNYNQHEVANCLTLS 262
           +    I+CK   +   Y              +  C K     +  +C T+S
Sbjct: 236 LQQDEIDCKNDNNEIFYLKGNNDHKFNQLTFIGICAKKE-GSDSTSCRTIS 285


>UniRef50_P15795 Cholera toxin transcriptional activator n=121
           Tax=Gammaproteobacteria RepID=TOXR_VIBCH
          Length = 294

 Score =  130 bits (326), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 89/224 (39%), Gaps = 5/224 (2%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            +I+ +   F P    LI   +++  + L +  SR L LL +   +V+++ D    VW E
Sbjct: 19  KFILAEKFTFDPLSNTLIDKEDSEEIIRLGSNESRILWLLAQRPNEVISRNDLHDFVWRE 78

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN-IQNHVINSSTDA 120
           +G  V  ++L Q IS +R+  +    +    + TVP+RG+++   +  ++  +   S  A
Sbjct: 79  QGFEVDDSSLTQAISTLRKMLKDSTKSPQ-YVKTVPKRGYQLIARVETVEEEMARESEAA 137

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLI---MLSAFVIGAYSAYWLWNNN 177
           H  + P ++   A        A   N     ++ ++     + +  +I       L    
Sbjct: 138 HDISQPESVNEYAESSSVPSSATVVNTPQPANVVTNKSAPNLGNRLLILIAVLLPLAVLL 197

Query: 178 QPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221
              P    +K +  ++G   N+  +  D        +  +    
Sbjct: 198 LTNPSQTSFKPLTVVDGVAVNMPNNHPDLSNWLPSIELCVKKYN 241


>UniRef50_B2D6Y9 ToxR n=2 Tax=Vibrio cholerae RepID=B2D6Y9_VIBCH
          Length = 186

 Score =  129 bits (323), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 35/155 (22%), Positives = 69/155 (44%), Gaps = 2/155 (1%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            +I+ +   F P    LI   +++  + L +  SR L LL +   +V+++ D    VW E
Sbjct: 7   KFILAEKFTFDPLSNTLIDKEDSEEIIRLGSNESRILWLLAQRPNEVISRNDLHDFVWRE 66

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN-IQNHVINSSTDA 120
           +G  V  ++L Q IS +R+  +    +    + TVP+RG+++   +  ++  +   S  A
Sbjct: 67  QGFEVDDSSLTQAISTLRKMLKDSTKSPQ-YVKTVPKRGYQLIARVETVEEEMARESEAA 125

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKS 155
           H  + P  +   A        A   N     ++ +
Sbjct: 126 HDISQPECVNEYAESSSVPSSATVVNTPQPANVVA 160


>UniRef50_B2VCE9 Probable transcriptional regulator n=1 Tax=Erwinia tasmaniensis
           RepID=B2VCE9_ERWT9
          Length = 134

 Score =  128 bits (321), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 61/108 (56%), Gaps = 1/108 (0%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN  I F      L S++N+   V L+ P +R L+ L+    +++ ++D   +VWE
Sbjct: 1   MNYIINKKIYFNSLKGLLNSMNNSVPMVQLSKPGARLLAELIIHSGEIMTREDLIKKVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108
           +  +    + L  +IS++R+ F  + D T  +I TVP+ GF++  +I+
Sbjct: 61  DHNLTPSGSNLSNHISLLRKAFLQL-DMTERIIITVPKVGFRLEAEID 107


>UniRef50_D2TAS4 Cholera toxin transcriptional activator n=2 Tax=Erwinia pyrifoliae
           RepID=D2TAS4_ERWPY
          Length = 146

 Score =  128 bits (321), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN  + F   +  L    N+D  + L+ P +R L+ L+    +++ ++D   +VWE
Sbjct: 11  MNYIINHYLCFDSSNGLLKLTDNSDSTLQLSRPGTRLLTQLIIHAGEIMTREDLIKKVWE 70

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS 117
           +  +    + L  +IS++R+ F  +   T  +I T+P+ GF++   ++I+      S
Sbjct: 71  DHDLTPSGSNLSNHISLLRKAFSQL-AVTEIMITTIPKVGFRLDAVVSIEKTAHRQS 126


>UniRef50_C5ZZN9 Putative uncharacterized protein n=1 Tax=Escherichia coli Vir68
           RepID=C5ZZN9_ECOLX
          Length = 216

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 47/217 (21%), Positives = 86/217 (39%), Gaps = 24/217 (11%)

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
           M V  N LYQ+IS++R+     G T  ++I T PRRGF +  +I I    +  + D  + 
Sbjct: 1   MEVGPNALYQSISMLRKALSTCG-TPDNIILTAPRRGFSLSQEICISCDNLQEAMDEQSS 59

Query: 124 N-APPAIKVNAGYKESIG----GAKNFNNKIL---------KHIKSHLIMLSAFVIGAYS 169
           +    + K+N  + E++     GA    ++++         K  +   I  S F      
Sbjct: 60  DWLNGSDKMNETHGENLMKEMWGAIPSESEMMEISSEYVRDKQCRKRKIDSSIFYYILIL 119

Query: 170 AYWLWNNNQPKPFF----KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCK 225
              L         F    + Y    E NGC+    + + D     +     +L +GI C+
Sbjct: 120 LTILSLIVPVYLVFLSDGEHYSKRFEFNGCYVYSRDASND-----NNTMDIVLKTGIKCE 174

Query: 226 KHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLS 262
              ++Y    +      ++ C K  +   + NC++  
Sbjct: 175 DRRYVYVTYFQGGDRESLIQCRKPLSTFSLPNCISYY 211


>UniRef50_Q7VR33 Transcriptional regulatory protein, C terminal domain n=2
           Tax=Candidatus Blochmannia RepID=Q7VR33_BLOFL
          Length = 212

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 54/204 (26%), Positives = 91/204 (44%), Gaps = 21/204 (10%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAF--PDVVAQQDFFTRV 58
           M +II+ NI F      L S+H++  ++ L+T A R L  L++       V ++  FT V
Sbjct: 1   MKYIIHSNIAFDTTEYILTSLHDSHASIKLSTSAGRILEELIKNRNTGLPVTREHLFTTV 60

Query: 59  WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118
           W+  G+      L Q +S+IR+    +G  + S+I TVP+RG KI+N + I+        
Sbjct: 61  WKTHGLEPSNGNLNQQVSLIRKTLTLLGLNSSSII-TVPKRGLKINNQLIIE-------- 111

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSH-----LIMLSAFVIGAYSAYWL 173
             H ++  P   VN   +  I       N ILK+  ++     ++     +I +    +L
Sbjct: 112 AVHNNSPNPQSTVNP-IENQINNTPPLPNTILKNTITYVKYILILTAMLIIIFSIGFIYL 170

Query: 174 WNNNQPKPFFKDYKTVAEINGCHF 197
           +N       +       EIN C  
Sbjct: 171 YNKTNNTKLY----CCKEINSCDI 190


>UniRef50_B2VGZ0 Transcriptional regulatory protein n=1 Tax=Erwinia tasmaniensis
           RepID=B2VGZ0_ERWT9
          Length = 190

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 82/182 (45%), Gaps = 1/182 (0%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           MY+I+N  I+F+P+  +L  ++  D ++VL+ PASR L  L+     VV +      VWE
Sbjct: 7   MYFILNKTIKFYPDTNELAIINEQDNSIVLSKPASRLLLTLINHLNVVVTRDYLLKTVWE 66

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           + G     N LY  IS +R+ F ++ +   S++ TVP+ G ++   ++      N+    
Sbjct: 67  DYGYTPSNNNLYMAISELRKSFSSL-NGGESILVTVPKVGLRLEALVDALEKGGNAEEKK 125

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
            T        +           K  +   LK      + +S  +I +  A +L+N  +  
Sbjct: 126 ETRTETEIEPLAEEKPGEEEEKKISSIYRLKSNTGVKVKISLALILSSLAIFLFNLEENV 185

Query: 181 PF 182
           P 
Sbjct: 186 PI 187


>UniRef50_D2YQP0 Transmembrane regulatory protein ToxR n=7 Tax=Vibrio
           RepID=D2YQP0_VIBMI
          Length = 280

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 6/196 (3%)

Query: 2   YWIINDNIEFWPE-HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
            +I+ +   F P     LI   N++  + L +  SR L LL +   +VV++ D    VW 
Sbjct: 7   KFILAERFTFDPLLSNSLIDKENSEEIIRLGSNESRILWLLAQRPNEVVSRNDLHDFVWR 66

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E+G  V  ++L Q IS +R+  +    +    + TVP+RG+++   +      I +  D 
Sbjct: 67  EQGFEVDDSSLTQAISTLRKMLKDSTKSPQ-YVKTVPKRGYQLITRVETVEEEIQNDMDE 125

Query: 121 HTHNAPPAIKVNAGYKESIG----GAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNN 176
            TH         +    S                K   S    L   +        ++  
Sbjct: 126 VTHQETGIDFSESTNSTSSSNLGQTTATPQKVTSKATNSWGTRLILLIAMLIPLAVVYLT 185

Query: 177 NQPKPFFKDYKTVAEI 192
           N  +  FK    V ++
Sbjct: 186 NPSESKFKPLTVVDDV 201


>UniRef50_D2TQU5 Putative transcriptional regulator n=2 Tax=Enterobacteriaceae
           RepID=D2TQU5_CITRO
          Length = 242

 Score =  127 bits (318), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/268 (20%), Positives = 96/268 (35%), Gaps = 27/268 (10%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M + I   I F  E   L+++   D  + L+  ++R L+ LL    D++++ + F  V++
Sbjct: 1   MRFDIEGFITFDTEDASLVNLLTGDC-IELSQTSTRLLAELLNHRGDILSRNEIFQSVFD 59

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           + G R   + L Q IS +RR    +G     +I TVPR GFKI  D  + N         
Sbjct: 60  KYGARASNSNLNQYISTLRRNLSDLG-VKKEIIVTVPRIGFKISEDAIVNND-------- 110

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                 P +               F++   + I     +  AF++               
Sbjct: 111 -REYRTPFLDEKDASLSLSAQTSPFHHLFTRIIA----LTIAFLLLMMKPGVYRPEADIH 165

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240
              K +  +          +   +D  + FD     +     +C K   LY    +   G
Sbjct: 166 KIVKGHCVIF------IPASLSLMDVKRSFD-----LTAQPFDCSKAKELYI-YRQQVQG 213

Query: 241 MIVMACNKNYNQHEVANCLTLSYREVNR 268
            +         + +   C++  YRE N 
Sbjct: 214 TLGNIMQLLLMECDNEGCVSFYYREKNN 241


>UniRef50_Q1Z5R8 Transcription activator ToxR n=4 Tax=Photobacterium
           RepID=Q1Z5R8_PHOPR
          Length = 291

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 35/150 (23%), Positives = 68/150 (45%), Gaps = 3/150 (2%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            ++I     F P    LI  H +D    L +  SR L LL+E    ++ +      VW E
Sbjct: 7   KYLIGQRFLFDPYDNSLIDQHESDELTRLGSNESRALGLLIEDPGAIITRNRLHDYVWRE 66

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS--TD 119
           +G  V  ++L Q IS +R+  +    +    I TVP+RG+++   +   +   +++  T 
Sbjct: 67  QGFEVDDSSLTQAISTLRKALKDSTKSP-DFIKTVPKRGYQMIAPVEEYSSEASNTEHTV 125

Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKI 149
           A T ++P +   N  +++ +  +      +
Sbjct: 126 AETPDSPDSADENNHHQDGVRHSATAIAHV 155


>UniRef50_A8AP73 Putative uncharacterized protein n=1 Tax=Citrobacter koseri ATCC
           BAA-895 RepID=A8AP73_CITK8
          Length = 233

 Score =  124 bits (310), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 42/240 (17%), Positives = 80/240 (33%), Gaps = 16/240 (6%)

Query: 25  DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84
              V L +PAS  L  L++    VV+Q    T  W E+      NT YQ I I+R     
Sbjct: 2   QKTVTLQSPASLILLYLIQHNNTVVSQNQLITAGWGEKNHVTSANTFYQTILILRNALSD 61

Query: 85  VGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKN 144
           +G     LI T+ RRG  I  +I        +S           ++     K      K 
Sbjct: 62  IG-LPRDLIKTIARRGMMISANIQTDEITAKASA---IEAPAQIVEPQMEPKGDTPIKKR 117

Query: 145 FNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTV--AEINGCHFNVTED 202
             ++        L+++   +  +           P+     Y+ +     + C      +
Sbjct: 118 HLSRPAALCGLALLVVMISIAASLFYM------SPESLLSSYEVLDSETFSSCTVLQKGN 171

Query: 203 TIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLS 262
            +        Y   +      C  + +++     S+  +  + C ++  ++    C+T  
Sbjct: 172 DV----LEKNYIRFMHKHREICDNNNYVFLSGMSSAKNITAIICPEDARENPSVKCITYY 227


>UniRef50_D0YIE0 Transcriptional regulator, CadC n=6 Tax=Klebsiella
           RepID=D0YIE0_KLEVA
          Length = 224

 Score =  123 bits (308), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 62/138 (44%), Gaps = 7/138 (5%)

Query: 5   INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64
           IN  + F     +L  +      V L  P +RCL LLL+    V+++ +F   VWE  G+
Sbjct: 22  INHEVIFNANMNELRPLSGDGECVSLNAPTARCLLLLLQNSGKVISRDEFLAAVWETRGV 81

Query: 65  RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI------QNHVINSST 118
            V  NT YQNIS++R+     G  +  +I TV ++GF +  D  I      +   +N +T
Sbjct: 82  VVSQNTFYQNISLLRKSLLKAG-LSADIIITVRQKGFSVAPDTLIIPLSDEECENMNRAT 140

Query: 119 DAHTHNAPPAIKVNAGYK 136
             H  N   A        
Sbjct: 141 LTHYQNNKVADVTAESKG 158


>UniRef50_Q8D287 YqeI protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of
           Glossina brevipalpis RepID=Q8D287_WIGBR
          Length = 267

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 108/278 (38%), Gaps = 28/278 (10%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLE--AFPDVVAQQDFFTRV 58
           M +IIN  + F      L      + ++ L+  A R L  L++       ++++  F  +
Sbjct: 1   MKYIINSLVIFDTIEYNLSLFKKKNKHIKLSHSAGRVLEELIKFHKNSSPISREYLFKNI 60

Query: 59  WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118
           W   G++     L Q IS+IR+G + +G    S+I T+P++G K+++ + I+    N++ 
Sbjct: 61  WIIHGLQPSNGNLNQQISLIRKGLKHLG-LNSSVIVTIPKKGLKLNDKLKIKKLEKNNAK 119

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178
           D        + K    +  S    K      L       I  S F      ++   NN  
Sbjct: 120 DFIIDEISSSFKKRTLFNLSRINFKYKIIFSLISFIILFIFFSMFY-----SFKYKNNLN 174

Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFD---KYKTRILDSGINCKKHPWLYFPLA 235
            K +F D     ++N C    T   I  L++ +   K      ++   CKK+  +     
Sbjct: 175 QKLYFFD-----QVNSCKVY-TFHPISILEKKEYDIKVAAAFEENDYKCKKNYIVIISKF 228

Query: 236 ----------KSSPGMIVMACNKNYNQHEVANCLTLSY 263
                            +  C ++ N+  + NCL L +
Sbjct: 229 VVSDDNLMKEDKKTNTFIEKCFRDKNERIL-NCLNLFF 265


>UniRef50_D0ZEM9 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202
           RepID=D0ZEM9_EDWTE
          Length = 251

 Score =  121 bits (302), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 93/248 (37%), Gaps = 26/248 (10%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + +N+N+ +  +  +L +  + D  ++L   A+R L LL+      V +   F  VW++ 
Sbjct: 11  YRLNENVLYNEQEAELKATVDGDA-ILLAPSANRLLHLLILNQGIPVTRDTLFKLVWDDH 69

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
           G+R     L Q IS++RR    VG      I T+P+ GF I   I I             
Sbjct: 70  GLRSSNANLNQYISLLRRQLFDVG-LPKDTIVTIPKIGFMIDKTIAIT---------LIQ 119

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
            + P  +    G  ++         K+   I S  I    F++   + +++  N Q  P 
Sbjct: 120 ESPPLKLFPEKGKDKT-------KQKLNTTIIS--ICTGLFLLSFLAIFFVSKNEQQLPK 170

Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMI 242
           FK          C+     +T   L    + K        +C      +        G  
Sbjct: 171 FKFQPITNNTIECNIYSLSNTTTFLSNASELKRL-----KDCNASFDYFIYFNHEQKGRE 225

Query: 243 VMA-CNKN 249
           +++ C K+
Sbjct: 226 LISWCKKD 233


>UniRef50_Q9RHQ9 Transmembrane regulatory protein ToxR n=2 Tax=Grimontia hollisae
           RepID=Q9RHQ9_VIBHO
          Length = 292

 Score =  121 bits (302), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 38/224 (16%), Positives = 79/224 (35%), Gaps = 17/224 (7%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            +++ +   F P    LI ++  D  + L +   R L +L+E    +V +      VW +
Sbjct: 7   RYLLGERFVFSPSDSSLIDLYENDDLIRLGSNECRVLMVLIEEPHAIVTRNRIHDFVWRK 66

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQN-------HVI 114
           +G  V  ++L Q+IS +R+  +    +    + TVP+RG+++   + + N          
Sbjct: 67  QGFEVDDSSLTQSISTLRKSLKDSTKSPM-FVKTVPKRGYQVVCSVEVYNEQEVELPEPA 125

Query: 115 NSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILK----HIKSHLIMLSAFVIGAYSA 170
            S  D       P +  +   +              K          + L ++V    + 
Sbjct: 126 ASVIDETAAKTEPELLSDNTAQTLPLPDAVAEQTEPKVSTNATAPAKMPLGSWVALVLTL 185

Query: 171 YW---LWNNNQPKPFFKDYKTVAEINGCHFN--VTEDTIDGLKE 209
                    + P P  + ++ +  I        VT   I   + 
Sbjct: 186 LVPLAFQIASNPNPKSEAFREILTIENVPVYIPVTNARISQWQP 229


>UniRef50_A8GL31 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568
           RepID=A8GL31_SERP5
          Length = 256

 Score =  119 bits (299), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 80/235 (34%), Gaps = 26/235 (11%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN  I F  +   +  + +    V+LT    R LSLL++    ++ ++   +  W+
Sbjct: 1   MKFIINKRIIFHEDKSTIELLDDTIEPVMLTATLCRVLSLLVKNNDLLLTREFILSSAWD 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E G     + L   IS+IR+ F + G++   +I TVPR+GF       +      +   +
Sbjct: 61  EYGKSSTHSNLNNYISMIRKIFNSFGES--DIIITVPRQGFMFSAG-EVNTVDGETIQGS 117

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
            + ++  A+     +   +         I+                          N  K
Sbjct: 118 VSSDSLAAVVERKWHSAHLIALALMAAAIVMIAA---------------YPLFNKYNSAK 162

Query: 181 PFFKDYKTVAEINGCHFNVTEDTI---DGLKEFDKYKTRILDSGINCKKHPWLYF 232
                   +  +  C   V            E  K K  I     NC     +Y+
Sbjct: 163 -----MSEIGRVENCKVEVLTAAHYVKHADDELAKVKPLIEKLKFNCAVPATIYY 212


>UniRef50_D1RYQ0 Transcriptional regulator, CadC n=1 Tax=Serratia odorifera 4Rx13
           RepID=D1RYQ0_SEROD
          Length = 258

 Score =  119 bits (298), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 53/235 (22%), Positives = 94/235 (40%), Gaps = 26/235 (11%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN  I F  +   +  + +    V+LT    R LSLL++    ++ ++   +  W+
Sbjct: 1   MKFIINKRIIFHEDKSSIELLDDTIEPVMLTATLCRVLSLLVKNNNLLLTREFLLSNGWD 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E G     + L   IS+IR+ F + G++   +I TVPR+GF    D        +S +  
Sbjct: 61  EYGKSSSHSNLNNYISMIRKIFNSFGES--EIIVTVPRQGFMFSADEVNTVDGESSLSSV 118

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                 PA  +       +                  ++L+A  I   +AY  ++  QP 
Sbjct: 119 SRDLPAPAAAIKWKPAGLVS-----------------LVLAAMAILMVAAYPFFDRYQPV 161

Query: 181 PFFKDYKTVAEINGCHFNVTEDTI---DGLKEFDKYKTRILDSGINCKKHPWLYF 232
              +    + +I+ C   V   +        E +K K  I  +  NCK    +Y+
Sbjct: 162 KHSE----IGKIDHCSVEVLTTSHYVKHTDDELEKIKPLIETARFNCKVPATIYY 212


>UniRef50_B4EUN0 Putative membrane protein n=2 Tax=Proteus mirabilis
           RepID=B4EUN0_PROMH
          Length = 274

 Score =  117 bits (294), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/270 (17%), Positives = 104/270 (38%), Gaps = 13/270 (4%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++IND+I F+ +   L S        +L  P+S+ L  L+    ++V Q++ F   W ++
Sbjct: 2   YLINDDIIFYSDKNLLFSKKLNKEKKIL-APSSKMLIHLIT-VNELVTQRELFRIGWGDK 59

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
              +  +  YQNI ++R+ F  + D    ++ TVPR+G+ I+++I+I+    N+  D   
Sbjct: 60  EKFITNSAFYQNILLLRKAFNEL-DIDDEIVITVPRKGYIINHNISIEKLSDNNIQDIKL 118

Query: 123 HNAPPA-------IKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWN 175
            N            ++      +I    +  + I K   S        +I      +   
Sbjct: 119 INENKISDIPHIKKEIEEDINTNINNKDHSLSSIKKTSISLSKKKLFIIIFTLIVLFFVV 178

Query: 176 NNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKT-RILDSGINCKKHPWLYFPL 234
                        +   + C      +     +  ++ K   I +   +   + ++Y   
Sbjct: 179 IFTFNYLDSRKHKLYNYSNCGTYKKYNLFCNKEILNEEKENLIDNYISSYSDYNFIYITE 238

Query: 235 AKSSPGMIVMACNKNYNQ--HEVANCLTLS 262
           + S     ++ C K ++        C+++ 
Sbjct: 239 SDSYSRTSLILCKKKFSPINFLHNQCVSIY 268


>UniRef50_C9PH99 Putative uncharacterized protein n=1 Tax=Vibrio furnissii CIP
           102972 RepID=C9PH99_VIBFU
          Length = 262

 Score =  117 bits (294), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 90/271 (33%), Gaps = 29/271 (10%)

Query: 1   MYWIINDNIEFWPEHRKLISVH--NADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRV 58
           M  ++N  + +      L      +   ++ LT  A+R L LL +     + +       
Sbjct: 1   MKLLLNHTVIYNSSDGTLKLSDAESDHESLTLTPTANRLLELLSKHHGTPMERDVLLMEG 60

Query: 59  WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118
           W++ G++   ++L Q IS +R+           +I T+P+ GF ++N+  I+N       
Sbjct: 61  WDKFGLKGSYSSLNQYISQLRKTLHKFTGV-DDIILTIPKVGFMLNNEFPIKN------M 113

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178
           D        +        +     K +    L      +++    +I             
Sbjct: 114 DPEPIAVSESTAKAHHAPKKKVTFKKYLYPFLYTSLFGVLVTGTTII------------- 160

Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDK--YKTRILDSGINCKKHPWLYF---- 232
            K F++D   + +I  C         D    F     K  +    I+C K   ++F    
Sbjct: 161 SKKFYQDAYHIGKIEQCDVYNFRKRSDEGIAFQLSILKEEMQKLNIHCGKTEKVFFHSQN 220

Query: 233 PLAKSSPGMIVMACNKNYNQHEVANCLTLSY 263
            L     G +  +     +    A C    Y
Sbjct: 221 SLFYGHSGRLFFSKCFLVDGKFSA-CENYYY 250


>UniRef50_UPI00018266EF transcriptional regulator, CadC n=1 Tax=Enterobacter cancerogenus
           ATCC 35316 RepID=UPI00018266EF
          Length = 184

 Score =  117 bits (294), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 61/126 (48%), Gaps = 4/126 (3%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADL-NVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVW 59
           M +++ D + +  E      +   D  + +LT  A+  + LL+    +VV ++ FF+ VW
Sbjct: 1   MKYLLADVLVYNDEEGTFSHIDAPDDAHQILTGTANAVMKLLVRHHGNVVERELFFSEVW 60

Query: 60  EEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTD 119
           +  G++   N+L Q ISI+R+            I TVP++GF +  DI +Q   +    D
Sbjct: 61  DARGVQGSNNSLNQYISILRKLLAGF-VPEKPAIVTVPKKGFMLSADIRVQ--PMPDPAD 117

Query: 120 AHTHNA 125
            H+   
Sbjct: 118 KHSDAP 123


>UniRef50_D0YZ11 Transcriptional activator ToxR n=1 Tax=Photobacterium damselae
           subsp. damselae CIP 102761 RepID=D0YZ11_LISDA
          Length = 299

 Score =  116 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 29/140 (20%), Positives = 57/140 (40%), Gaps = 1/140 (0%)

Query: 5   INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64
           I     F P    LI     +  + L +  SR LSLL++    ++ +      VW E+G 
Sbjct: 10  IGQRFIFDPYDNSLIDTVENNELIRLGSNESRALSLLIDEPGAIITRNRLHDYVWREQGF 69

Query: 65  RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHN 124
            V  ++L Q IS +R+  +    +    + TVP+RG+++   +     +  + T      
Sbjct: 70  EVDDSSLTQCISTLRKALKDPTKSPE-YVKTVPKRGYQMIATVEKYVDMPLAITATEHAE 128

Query: 125 APPAIKVNAGYKESIGGAKN 144
              ++  +     ++  A  
Sbjct: 129 DLTSVPEHHYQDSALVTAPQ 148


>UniRef50_C4SAM2 Possible regulatory protein n=1 Tax=Yersinia mollaretii ATCC 43969
           RepID=C4SAM2_YERMO
          Length = 243

 Score =  113 bits (283), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 86/228 (37%), Gaps = 12/228 (5%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M  II  NI F P  R +   +     V +    S  LSLL   +P  +++++    +W 
Sbjct: 25  MDEIIIGNIIFTPSKRTI---NKGGAVVKIRNKESEVLSLLCHHYPSSLSREEIEREIWG 81

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E    V  NTL Q IS +R       D    L+ T+P++G+ I    +  +   NS  D 
Sbjct: 82  ES--YVTDNTLTQTISNLRHAL---DDKARELVTTIPKKGYCIGIKPDFTSS--NSLQDL 134

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                   + V       +  + +F+ KI++ I S +    +F + + S     N     
Sbjct: 135 ILTQDDSMVSVKPKSTSLVSKSLSFHYKIIRLIVSIVGFFISFELTSNSHQIKINEVTTL 194

Query: 181 PFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTRILDSGINCKK 226
           P       V + +       E  I      + +    +  +  + C+K
Sbjct: 195 PILVGLDQVLDKDFLSLYQKEPYIFLKKWSDGEYIICKYNNGELLCEK 242


>UniRef50_D2A9T6 Transcriptional regulator, CadC n=3 Tax=Shigella flexneri
           RepID=D2A9T6_SHIF2
          Length = 254

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/265 (19%), Positives = 97/265 (36%), Gaps = 31/265 (11%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
           ++IIND I F P    L +V+  D  +     A   L++LLE+    V +      V E 
Sbjct: 6   FFIINDAIIFDPNKCSLSNVNTQDE-INFPATAGCILAVLLESNGGAVDRNSIIDSVLER 64

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
               +  NTL Q IS++R+ F+ +G    ++I T+P+ GF I  +I I      S     
Sbjct: 65  FSFDLSNNTLNQYISLLRKSFKNIG-VEENVILTIPKVGFYISENITI------SKQSYD 117

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
             +    +      K SI   +   + ++  +   +  ++                +   
Sbjct: 118 DSHLQEDVVEKVERKRSIPLFRILISLVVVIVIIEMFAVA---------------FKDTY 162

Query: 182 FFKDYKTV--AEINGCHFNVTEDTIDGLKEFDKYKTR-ILDSGINCKKHPWLYFPLAKSS 238
              DY  V   +I+ C   ++E+  +      + +   I    + C       + +    
Sbjct: 163 SITDYPLVKSGKIDTCDLYLSENLNEIGIAKSQIEAAEISKKHLPCVPGANFIYDVNSMH 222

Query: 239 PGM-----IVMACNKNYNQHEVANC 258
             +      +  C K+ N    A C
Sbjct: 223 YLLGEGQRYLSRCIKSSNDETYAIC 247


>UniRef50_B2Q575 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2Q575_PROST
          Length = 329

 Score =  110 bits (274), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/309 (15%), Positives = 97/309 (31%), Gaps = 64/309 (20%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLL--EAFPDVVAQQDFFTRVW 59
            ++IN+   F      +   +  D  V L+ PASR L+ ++       +  +++   +VW
Sbjct: 6   DYLINNKFIFETGKNFIFIKNEVDKFVELSKPASRLLNEIIILNQKSKIATREELLIKVW 65

Query: 60  EEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI------------ 107
           EE G+    N L   IS IR+ F  +G    S I TVP++GF+   D             
Sbjct: 66  EEYGLVGSNNNLNTYISEIRKKFELIGIDPKS-IVTVPKKGFRFDCDALETITDENDTPY 124

Query: 108 ----------------------------NIQNHVINSSTDAHTHNAPPAIKVNAGYKESI 139
                                       +  +         H  +    I+ +       
Sbjct: 125 LPEEEIVVLNSSDVTLGLDDYEHSVTHSSQYSEKNAEEATTHFVDQKSIIEEHLHQPRQD 184

Query: 140 GGAKNFNNKI--------------LKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKD 185
                 ++ +               K+      +++  +      ++   N+        
Sbjct: 185 NSISELSSTVQEEPQLLKIQNKGKFKNNPILFALIAMSLFLFIFVFYYTTNSNASMEVNS 244

Query: 186 YKTVAEINGCHFNVTEDTIDG--LKEFDKYKTRILDSGINCKKHPWLYFPLAKSS----- 238
           Y TV+E + C   +  + I+       D    ++    +NC++   +      +S     
Sbjct: 245 YMTVSERDKCLIQIPINLIESSTKDSIDFVNKKLDKYNVNCQEPKRVILLSEPNSIQSVD 304

Query: 239 PGMIVMACN 247
             + +  C 
Sbjct: 305 KNISLSICK 313


>UniRef50_A0KHX7 Transcriptional regulatory protein, C terminal n=7
           Tax=Gammaproteobacteria RepID=A0KHX7_AERHH
          Length = 269

 Score =  107 bits (266), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 77/243 (31%), Gaps = 9/243 (3%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M + IN    +      L    + + +  L+  A+      L     +V++++   +VW+
Sbjct: 1   MRYHINARFIYDATDGSLTQRESVEPDSQLSITANALFYFFLRNTG-IVSREEVLKKVWD 59

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           + G+    + L Q +SI+R+ FR       ++I TV R   +++ ++ I+   I      
Sbjct: 60  DNGLTSSNSNLNQYLSILRKAFRH--YDIDNIIITVSRGYLQLNPEVIIE--PIEHVPAP 115

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                P    V A                        I     +  A         N  +
Sbjct: 116 SIEIVPSPSTVAAAEPAFDPAEWPLPLTPRSRGICWYIAGGCMLAFALMLLAFGLLNGRE 175

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLK---EFDKYKTRILDSGINCKKHPWLYFPLAKS 237
           P       +   + C    +++ +  +      + ++       I+CK      F     
Sbjct: 176 PRPVTLTGIPN-SQCELLASDEMLRSVSATTYGEHFEQVRQRLNISCKPGERFLFFYGDR 234

Query: 238 SPG 240
              
Sbjct: 235 LET 237


>UniRef50_B6XAC7 Putative uncharacterized protein n=2 Tax=Providencia
           RepID=B6XAC7_9ENTR
          Length = 272

 Score =  105 bits (262), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 86/236 (36%), Gaps = 8/236 (3%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++IN NI +      L    N D  + LTT  +R L +L++   +V+ ++   +RVW+
Sbjct: 1   MKYLIN-NIIYDSHQGLLY-RDNIDDAIKLTTTLNRLLLVLVQNNGEVLDRETLLSRVWD 58

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST-D 119
           E       N L  +IS++RR   +       +I T+P+ G K    +   +  +N     
Sbjct: 59  EHNQVASDNNLNSSISVLRRHLSSF--FEEEIITTIPKVGIKFDAKLQSLSTKLNQKPHQ 116

Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179
               N            E+    ++ + K   +I ++  +    V+           +  
Sbjct: 117 EEQPNILLKESEQPSIIENSPKKQSLSVKEKSYILNNRYIELTLVVIIIFCLLYLFKSYF 176

Query: 180 KPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTR---ILDSGINCKKHPWLYF 232
                +Y  V  I+ C                 +      +    I+CKK   L++
Sbjct: 177 FATRTEYPEVGRIDQCSIRYINSYHKPDMTTINFTDLQNQLTRLNIDCKKPATLFY 232


>UniRef50_A7MIL4 Putative uncharacterized protein n=2 Tax=Cronobacter
           RepID=A7MIL4_ENTS8
          Length = 148

 Score =  103 bits (257), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 58/109 (53%), Gaps = 4/109 (3%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEA-FPDVVAQQDFFTRVWEE 61
           ++IN N  F   + +L +  NA + + +T+  +RCLS ++E     V+ +Q     +W  
Sbjct: 4   YLINHNCIFTEANNELKNTDNACV-IKMTSMRARCLSFIIENAKNGVIEKQQIAAFLWGN 62

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ 110
            G  +    L Q + ++RR  RA+G   + L  T+P+ G K+++D+ + 
Sbjct: 63  RGQFISDANLTQVLYLLRRDLRALGI--NDLFVTIPKLGIKVNDDVPVD 109


>UniRef50_A1JPG4 Possible reguatory protein n=5 Tax=Yersinia RepID=A1JPG4_YERE8
          Length = 219

 Score =  101 bits (252), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M  II  +I F P  R L   +     + +    S  LSLL   +PDV++++D   ++W 
Sbjct: 1   MNDIIIGDIIFTPLKRTL---NKGGSVIKIRNKESEVLSLLCFHYPDVLSREDIEKKIWS 57

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E    V  NTL Q IS +R       D  H L+ T+P++G+ +    N  ++  +  +  
Sbjct: 58  ES--YVTDNTLTQTISNLRHALN---DKKHELVTTIPKKGYCLGVKPNFTDNDFSEISSV 112

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                  ++  N    ES+   K   +  +  +   + + ++F + +        N +  
Sbjct: 113 TQTEVLDSLAYNTT--ESLSKQKYLASGFIVFMMFCVCLATSFNVTSDYYQIKITNVKNL 170

Query: 181 PFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTRILDSGINCKK 226
           P   +   + + +       E  I     K  +    ++   GI C+K
Sbjct: 171 PLTINIDEIHDKDFLSSYNKEPYIFLKKQKNSEYTVCKLQHGGITCQK 218


>UniRef50_B5F706 Putative uncharacterized protein n=20 Tax=Salmonella enterica
           subsp. enterica RepID=B5F706_SALA4
          Length = 149

 Score =  101 bits (252), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 59/131 (45%), Gaps = 5/131 (3%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEA-FPDVVAQQDFFTRVWEE 61
           + IN+   +    R++IS+H+    + +T   +RCLS L E  +  ++ ++     VW E
Sbjct: 4   YTINNEFIYNESLREIISLHDK-KVLKVTLMRARCLSYLFENAYKKLITREMISHAVWGE 62

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI-NSSTDA 120
               V    L Q + ++RR  + +G     L  T+PR+G KI     I    I   +   
Sbjct: 63  RSQFVSDANLTQLLYLLRRDLQQIGLF--ELFVTLPRQGIKIDERFIIDAADIPPQAIQH 120

Query: 121 HTHNAPPAIKV 131
           HTH     I +
Sbjct: 121 HTHRCNKIISI 131


>UniRef50_B4TIC0 Putative uncharacterized protein n=33 Tax=Enterobacteriaceae
           RepID=B4TIC0_SALHS
          Length = 147

 Score =  101 bits (251), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 10/152 (6%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFP-DVVAQQDFFTRVWEE 61
           +IIN N  +     +L +V N+   + +T   ++CLS ++E    +++ +Q   T +W  
Sbjct: 4   YIINSNCIYNEGKYELRTVSNS-QVIKMTAMRAKCLSFIIENAHLEIIERQKITTALWGS 62

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
               V    L Q + +IRR  +A+G   + L  T+PR+G K+++DI I       +TD+ 
Sbjct: 63  RSHYVNDANLTQILYLIRRDLKALGI--NDLFITIPRQGLKVNSDIAI------IATDSE 114

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHI 153
           T      I        +   +    + +  HI
Sbjct: 115 TKGRKKQIVRQTIAALTTVFSVTLGSLMYLHI 146


>UniRef50_D2T558 Protein rcaC n=3 Tax=Erwinia RepID=D2T558_ERWPY
          Length = 249

 Score = 99.5 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 87/258 (33%), Gaps = 14/258 (5%)

Query: 8   NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
            + F PE+  L    N  +++ +T    RCL  L++     + ++      W + G+ V 
Sbjct: 2   RVYFEPENCILS---NDKMSIKITLQEGRCLDYLVKNEGKFIRREKLLEECWIKRGVTVS 58

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPP 127
            + + Q++  +RR F   G    S + T  R+G  +      Q   I   T   +HN   
Sbjct: 59  DSAVRQSLYRLRRAFEDAG-LPPSTLTTQARKGHIL------QEGSIILLTAHASHNCVD 111

Query: 128 AIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYK 187
                   K+            +  +       S FVI   +   L+   Q      +Y 
Sbjct: 112 IESSVPSMKKQGTYRHTHLYSTVTSLLPFAKFASLFVIFFLAG--LYTRQQIMITEVNYH 169

Query: 188 TVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACN 247
              E  G  +   ++         K    + +  +N     ++Y      +       CN
Sbjct: 170 QAEEKEGRFYFYRKNQAPYESAASKINYWLDNKLVNASDMKYVYLN-NSWAGNTSFYLCN 228

Query: 248 KNYNQHEVANCLTLSYRE 265
           +       ++C +++ + 
Sbjct: 229 EEIGSEG-SHCTSVTVKG 245


>UniRef50_A6AKR5 Transcriptional regulatory protein, C n=3 Tax=Vibrio
           RepID=A6AKR5_VIBHA
          Length = 250

 Score = 99.1 bits (245), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 98/251 (39%), Gaps = 24/251 (9%)

Query: 10  EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69
            + P    L    N +  + +    S+ L+LLLE  P+VV +QD     W  E   +   
Sbjct: 3   LYNPIKNTLS---NGEKTIKIGYRESQILTLLLERSPEVVKKQDIVQFAWGNE--YIGET 57

Query: 70  TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAI 129
           +L ++IS++R+ F  +G    S I TVP+ G+++  D+ +   ++       T NAP   
Sbjct: 58  SLAKSISVLRQSFIKIG-IKDSPILTVPKVGYRLVEDVLLNECLV-------TINAPREE 109

Query: 130 KVNAGYKESIGGAKNFNNKI-LKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKT 188
            V A  +E+   A     K   +++  +++ LS            ++++   P F     
Sbjct: 110 IVPAKPEETSQPAYAAKQKPGYRNLVCYVVSLSFLFAAVLMVASKYHSSYSHPQFSKLLN 169

Query: 189 VAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVM--AC 246
              +      ++  T   L    + +  + ++   C     +Y        G+  +    
Sbjct: 170 EHTVGSLEVYMSPSTSLSL----RVQELLAENQCQC----VVYIEENNGFSGLSWLNKKT 221

Query: 247 NKNYNQHEVAN 257
            K+ N     +
Sbjct: 222 RKSINVFYTPD 232


>UniRef50_C2LLY1 Regulatory protein n=9 Tax=Enterobacteriaceae RepID=C2LLY1_PROMI
          Length = 295

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 102/289 (35%), Gaps = 34/289 (11%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M + IN +I +      + S+   D++  L+  A+  L   ++    VV + +   RVW+
Sbjct: 10  MKYRINASIYYDATDGAI-SLEKGDVDTHLSITANALLFYFIQNPG-VVNRDEVLKRVWD 67

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN----- 115
           + G+    + L Q +S++R+ FR  G    ++I T+ +   + + DI+++    +     
Sbjct: 68  DNGLVSSNSNLNQYLSLLRKTFRHYGI--ENIIVTIAKGRLEFNPDISVELIDDSTLLPV 125

Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILK-------------HIKSHLIMLSA 162
           + T+ H   A  +   +           N ++++ K                    +   
Sbjct: 126 TQTNEHEGEANKSNIASPIETSLSSEPDNLDSELEKEPQLSVTSPQKPEICWYLASIGFL 185

Query: 163 FVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTR---ILD 219
           F           N +Q KP      T    N C     E  I+     +  +        
Sbjct: 186 FGAIFLVVIIFLNQHQSKPIT---LTPLTHNDCELLSNEAMINSSVSDNYIRNFDAVRKK 242

Query: 220 SGINCKKH-PWLYFPLAKSSP----GMIVMACNKNYNQHEVANCLTLSY 263
             + C K   +++F   K        + +  C KN +    + C    Y
Sbjct: 243 LNLQCVKGERFVFFYGDKLQTNGLGRVFLAHCAKNEDN-PFSYCDNYFY 290


>UniRef50_B1JQB0 Transcriptional regulator, CadC n=18 Tax=Yersinia
           RepID=B1JQB0_YERPY
          Length = 250

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M  I+ +++ F P+ R +           +    S  LSLL E +P+ ++++D   R+WE
Sbjct: 1   MNTIVINDVFFTPQKRTI---DRNGKVTKIRNKESELLSLLCEYYPEPISREDIEKRLWE 57

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI 109
             G  V  NTL Q IS +R       D  H L+ T+P++G++I     I
Sbjct: 58  --GSYVTDNTLTQTISNLRHAL---DDKKHELVVTIPKKGYRIGIKPEI 101


>UniRef50_UPI000197C3BF transcriptional regulator, CadC n=1 Tax=Providencia rettgeri DSM
           1131 RepID=UPI000197C3BF
          Length = 261

 Score = 97.2 bits (240), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 91/232 (39%), Gaps = 7/232 (3%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +I+N+ I++  +  ++  V      + LT   +    +L++     + +++   ++  
Sbjct: 1   MIYILNNIIKYNSDLGEIFRVDTELSVMKLTPVLNYIFIILIQNNKTTITREEILKKILN 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           +  ++V  NTL Q IS +R+          + I ++ ++G  I ++I I+  +   +   
Sbjct: 61  KYDLKVSINTLNQYISTLRKVLHQQ-LLVENAILSISKKGLVISSEIQIEESIAKFNNKI 119

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                PP    N   K  +   KN   K    I S  ++    ++  Y    +     P 
Sbjct: 120 EKSLVPPPTSSNKSNKSLLLSDKNHIIKKTLLIISVFLL----LVIIYLINQIHAIKFPY 175

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYF 232
              + YK ++ I  C     +D  +     D    + +D  + C+     Y+
Sbjct: 176 ASIQSYK-ISTIGDCPVYGFKDNYEK-NMSDTISKQAIDFNLTCEDSDVFYY 225


>UniRef50_B2VJM5 Probable transcriptional regulator n=1 Tax=Erwinia tasmaniensis
           RepID=B2VJM5_ERWT9
          Length = 218

 Score = 97.2 bits (240), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 67/216 (31%), Gaps = 21/216 (9%)

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
           M   + +LYQNIS +RR     G     +I T+PRRGF +     I        T+    
Sbjct: 1   MEPTSTSLYQNISNLRRALNKSG-LNEGIIRTMPRRGFLLSPLTEIVRETYTPDTETLPD 59

Query: 124 N----------------APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGA 167
                                +      + S         K +K + ++ I     +   
Sbjct: 60  LTTAGGVDRAEKEVFLPPTSEVSEKPTTRRSDTKTTASIEKKIKRMAAYGI-GLMLIFLL 118

Query: 168 YSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKH 227
             A    N  +       +      + C   V     D     ++    +    I+C+ H
Sbjct: 119 ILAPLYLNKAETLQNNSLFVPFMHSDRCSIFV---NRDSRLSSEEIHKFVSVLNISCQTH 175

Query: 228 PWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSY 263
            + Y    K++    V  C  +  + E A C +  Y
Sbjct: 176 RYFYITTYKNADRASVFMCQNSLLEKENAWCHSDYY 211


>UniRef50_D1P736 Putative transcriptional regulator with C-, effector domain of the
           bipartite response regulator n=4 Tax=Providencia
           RepID=D1P736_9ENTR
          Length = 322

 Score = 94.5 bits (233), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 5/141 (3%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCL--SLLLEAFPDVVAQQDFFTRVW 59
            + I++   F      +    + D +V L+ PA+R     LLL     +  + +  T VW
Sbjct: 6   DYTIDEKFIFEQRKCLIYLKGDLDQSVELSKPAARLFGEILLLNFKKGIATRDELLTNVW 65

Query: 60  EEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTD 119
           EE G+    N L   IS IR+    VG    + I TVP++GF+I + ++     I+   +
Sbjct: 66  EEYGLVGSNNNLNTYISEIRKKLEQVGIDPKT-IVTVPKKGFRIDSHLS--KFKIDDDAE 122

Query: 120 AHTHNAPPAIKVNAGYKESIG 140
             ++        ++ +   + 
Sbjct: 123 IISNEIITKDDYDSLHPSLVP 143


>UniRef50_D0XI00 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3
           RepID=D0XI00_VIBHA
          Length = 267

 Score = 93.7 bits (231), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 9/166 (5%)

Query: 6   NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65
           N  I + P    L    N++  V +    S+ L+LLLE  P VV ++D     W  E   
Sbjct: 17  NRMILYNPIKNTLS---NSNKTVKIGYRESQILTLLLEHSPAVVEKRDIVQFAWGNE--Y 71

Query: 66  VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125
           +   +L ++IS++R+ F  VG    S I TVP+ G+++   + +   ++           
Sbjct: 72  IGETSLAKSISVLRQTFTKVG-MKESPIVTVPKVGYRLVEGVLLNECLV---AATPPDEK 127

Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171
                V           +     +  +I S  I+ +A ++ A   +
Sbjct: 128 VQQKSVQQPTPPLPNKHETNYKNLACYIVSLGILFAASLVSASKFH 173


>UniRef50_A6XSQ7 ToxR2 n=9 Tax=Vibrio RepID=A6XSQ7_VIBCH
          Length = 183

 Score = 93.7 bits (231), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 71/176 (40%), Gaps = 12/176 (6%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            +++ + + F    R++++    D  + L    +  L LL E    V+ +++   +VW +
Sbjct: 4   NYLLGNQVIFDTLKREVLTT---DKIISLGGREASILKLLCENANTVITKEEINDKVWGK 60

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND------INIQNHVIN 115
             + V   +L + IS +R+  + +       I T+P+ G+ +  +      +  ++    
Sbjct: 61  --VFVSETSLTKAISNLRKSLQLIDGVMCE-IKTIPKEGYMLILEGESLGLMVTEDEPPL 117

Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171
                 + +        A ++     +K   N    +IK   ++L+ F     S++
Sbjct: 118 EVKRIESKDLAMIKAPAANHRFLPALSKTEENTHSGYIKPSWLLLAVFSSALISSF 173


>UniRef50_A9MR60 Putative uncharacterized protein n=11 Tax=Salmonella enterica
           RepID=A9MR60_SALAR
          Length = 149

 Score = 92.2 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 53/115 (46%), Gaps = 4/115 (3%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEA-FPDVVAQQDFFTRVWE 60
            + IN++  +    R++IS+ +    + +T   +RCLS L E  +  ++ ++     VW 
Sbjct: 3   KYTINNDFIYNESLREIISLRDK-KVLKVTLMRARCLSYLFENAYKKLITREMISHAVWG 61

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN 115
           E    V    L Q + ++RR    +G     L  T+PR+G KI     I +  I 
Sbjct: 62  ERSQFVSDANLTQLLYLLRRDLEQIGLFK--LFITLPRQGIKIDERFIINSADIP 114


>UniRef50_C9PHD6 Transcriptional activator ToxR n=1 Tax=Vibrio furnissii CIP 102972
           RepID=C9PHD6_VIBFU
          Length = 203

 Score = 91.8 bits (226), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 58/146 (39%), Gaps = 3/146 (2%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           +IN    F    + L   +  D  +++    SR L+LL      V++++D + +VW E G
Sbjct: 9   VINSRFLFDAVEKSLTDAY--DEKIIIGDNESRILTLLTSHPNAVLSREDIYQQVWVERG 66

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
            +V  ++L Q+IS++R+            I T  R G++    ++    VI         
Sbjct: 67  NKVDDSSLTQSISLLRKVLGDKATNPE-YIKTEARIGYRFIAPVDPVYSVIPLEELVEVT 125

Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKI 149
                   N     +    +  N++ 
Sbjct: 126 EQNVQPAANTRQTPAYPEQRYINSEF 151


>UniRef50_A4XNQ3 Transcriptional regulator, CadC n=1 Tax=Pseudomonas mendocina ymp
           RepID=A4XNQ3_PSEMY
          Length = 277

 Score = 91.8 bits (226), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 80/199 (40%), Gaps = 19/199 (9%)

Query: 11  FWPEHRKLISVHNA-DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69
           F+P   +L  V +  +  + L    SR L  L+    +VVA+++  +  W +    V   
Sbjct: 32  FYPALYQLTLVRSGIEEKIDLGYSGSRLLERLVREPGEVVAREELMSHAWADR--VVGQG 89

Query: 70  TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAI 129
           +L Q I  +R+      + +  +I T+PRRG+ ++    +    I+        +AP   
Sbjct: 90  SLNQQIYTLRQILGD--EKSREIIQTLPRRGYLLNPSYLVYPPSIDDIGAVQEADAP--- 144

Query: 130 KVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYW-LWNNNQPKPFFKDYKT 188
                     G   NF ++  +   S L++LSA  + A   +  L+  + P         
Sbjct: 145 ----------GTPPNFLHRHSRRRTSWLVLLSALGLMAVGLFVALYQFSLPARLHSSELN 194

Query: 189 VAEINGCHFNVTEDTIDGL 207
           + +I+  + +     +  L
Sbjct: 195 LGQISLLYVDQDAQRLQQL 213


>UniRef50_A3USG7 Cholera toxin transcriptional activator n=1 Tax=Vibrio splendidus
           12B01 RepID=A3USG7_VIBSP
          Length = 239

 Score = 91.4 bits (225), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 76/213 (35%), Gaps = 6/213 (2%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            +IIND+I+   E  ++           + +  S  L   +    +V+ +Q    +VW  
Sbjct: 4   EFIINDDIQVNLEESEIHHFKTG-RTYPIGSNESELLKFFISRPNEVITRQVLIEQVWVS 62

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
           +G+ V   +L Q ISI R+      D +  +I T   +G++    +        S   + 
Sbjct: 63  KGIYVEDGSLMQTISICRKALE---DKSGMIIVTERGKGYRFAGQVTQDKERALSKIQSQ 119

Query: 122 THNAPPAIKVNAGYKESIG-GAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                   + +          +        K   S L +++ FV+ A  +++L++     
Sbjct: 120 PKQETKQPENSKAIDSIATENSTTEKTAATKKTNSVLALIALFVVTAGLSHYLFSYLDRN 179

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKY 213
              +D      I  C     E T + L     Y
Sbjct: 180 SLGEDLVGQHFI-SCRIESDEFTFNELFNVTLY 211


>UniRef50_C9NME3 Putative transcriptional activator ToxR n=1 Tax=Vibrio
           coralliilyticus ATCC BAA-450 RepID=C9NME3_9VIBR
          Length = 255

 Score = 91.0 bits (224), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 77/235 (32%), Gaps = 17/235 (7%)

Query: 9   IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68
           I F     KL    N    + +    ++ L LLL+  P+VV + D     W  E   +  
Sbjct: 2   IIFHSVQNKL---SNTQRVIKIGYREAQVLDLLLKHSPEVVKKHDIVQHAWGSE--YIGE 56

Query: 69  NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPA 128
            +L ++IS +R+    +G    S I TVP+ G+++ +  +I+             N  P 
Sbjct: 57  TSLAKSISTLRQALLKLG-AKESPIVTVPKVGYRLVS-HSIEYAPAEPPPQIDKSNPAPN 114

Query: 129 IKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKT 188
           +  +A        +     +    +     +   F     +   + +  + +    D   
Sbjct: 115 LPTSAASSSQRVTSNLSLKECKSPLCYVAAIALLFASSILALSKV-HGWRWEDIPSDQHL 173

Query: 189 VA-EINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMI 242
               +         +T   L      +  +  +  +C     +Y    +    + 
Sbjct: 174 ARHTVGQLQVFTESETRLSLP----LRQLLSQNQCDC----VVYIEKNERFSELS 220


>UniRef50_D2A7F9 Membrane protein n=2 Tax=Shigella flexneri RepID=D2A7F9_SHIF2
          Length = 201

 Score = 91.0 bits (224), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 62/149 (41%), Gaps = 11/149 (7%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
            Y+ +   ++F+P  R++ +       + L+    R L LLL+   D   +Q     VW 
Sbjct: 6   FYFSLGQGVKFYPASRRITTSTGN--VINLSENGYRFLLLLLQGESD---KQHIINEVWR 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E+   V  ++ Y  I ++R+     G  + SLI T+PR+G +      ++ HV  +  D+
Sbjct: 61  EQKGSVSDSSYYGQIYMLRKALDVAG-LSSSLIKTIPRKGVRYLG--KVEKHVCENERDS 117

Query: 121 HTHNA---PPAIKVNAGYKESIGGAKNFN 146
              ++     +         +I    N  
Sbjct: 118 DEDSSSYTNDSEAREVNTDANIPENDNSQ 146


>UniRef50_C4U6Y3 Putative uncharacterized protein n=1 Tax=Yersinia aldovae ATCC
           35236 RepID=C4U6Y3_YERAL
          Length = 144

 Score = 89.5 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN+ + F  +   +    + ++ V L++ +SR LSLL+E     V++   +  VWE
Sbjct: 1   MKYIINNTVIFVEDDG-IYLKDSTEVEVKLSSLSSRILSLLIENKGKPVSRDMIYKLVWE 59

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           + G+     +L  NIS +R+  R  G      I T+P+ G  I   I I           
Sbjct: 60  DYGLAPSNTSLNNNISFLRKSLRDCGV--DDFIVTIPKIGISIEKSILIDTINNEEVITK 117

Query: 121 HT 122
            +
Sbjct: 118 KS 119


>UniRef50_A5L3N2 DNA-binding transcriptional activator n=2 Tax=Vibrionales
           RepID=A5L3N2_9GAMM
          Length = 492

 Score = 89.1 bits (219), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 60/172 (34%), Gaps = 5/172 (2%)

Query: 10  EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69
            F P   +++    A+  V +    ++ L  L         + +    VW   GM +   
Sbjct: 14  LFVPNEGQILF---AERTVTIDKRLTKLLEFLCLNPGQTHTRDELINNVW--SGMILSDQ 68

Query: 70  TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAI 129
            + Q +  +R+  +      +S I TVP+RG+K   D+       +   +     A P+ 
Sbjct: 69  VVTQAVFELRKVLKQNSQQHNSYIITVPKRGYKFEADVIQSKIETDQVAEPEPSTAQPSD 128

Query: 130 KVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
              +   + +                 + +L   ++   S Y L++ +   P
Sbjct: 129 PEQSPPADKLPQTDVSEKTKPNKRNLMIGLLLGAIVVMESGYILYSASSSTP 180


>UniRef50_D0I6A9 Putative transcriptional activator ToxR n=1 Tax=Grimontia hollisae
           CIP 101886 RepID=D0I6A9_VIBHO
          Length = 185

 Score = 87.5 bits (215), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 68/177 (38%), Gaps = 9/177 (5%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            +++ + + F    R++++    D  + L    +  L LL E    V+ +++   +VW +
Sbjct: 4   NYLLGNQVIFDTLKREVLTT---DKIISLGGREAAILKLLCENANMVITKEEINDKVWGK 60

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI---HNDINIQNHVINSST 118
             + V   +L + IS +R+  + +       I T+P+ G+ +     ++ +         
Sbjct: 61  --VFVSETSLTKAISNLRKSLQLIDGVMCE-IKTIPKEGYMLILEGENLGLMVTEDEPPL 117

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWN 175
           +     +     +      +   + N   +      S L+  S F +   SA  L +
Sbjct: 118 EVKRIESKDLAMIKPPSANNRMLSSNVIGQSQHPANSVLMKPSWFFMTILSAVLLSS 174


>UniRef50_D0XFV2 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3
           RepID=D0XFV2_VIBHA
          Length = 277

 Score = 86.0 bits (211), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 82/238 (34%), Gaps = 10/238 (4%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M+ I   N+   P  RKL +    D  V L     + L+LL+E     V ++  F   W+
Sbjct: 1   MHRIYFANLILDPTTRKLSNSDGDD--VPLRPLPYQVLNLLIEKQGVHVTREALFESCWD 58

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
             G  V    L   IS +R+    +       I TV + G+ +  + +++   I    + 
Sbjct: 59  --GSVVTDQALTNVISGLRKKLAQLNAQGVQ-IKTVSKIGYLLEVNADVK--PIKQKVEI 113

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                     V++  K +        +K        +     F I +   +  +  +   
Sbjct: 114 PELQTLEIDDVDSQVKAAPKQEAESRDKAFSVAPILMAAFLLFAIASVLYFRPFAPHPDF 173

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSS 238
               DY+    ++   F   +   D L      K+   +    C     +Y  +++S+
Sbjct: 174 LDDSDYQH-FSVSETDFYFYDQNHDELDLSALAKSLNDEVFPVC--PAIVYLRVSESA 228


>UniRef50_C4UIA8 Possible regulatory protein n=1 Tax=Yersinia ruckeri ATCC 29473
           RepID=C4UIA8_YERRU
          Length = 260

 Score = 86.0 bits (211), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 9/150 (6%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M  I   ++ F P   K+ S+    + V L    S  L+LL E +PD V++      +W 
Sbjct: 39  MEKIYIGDVSFIP---KIRSLELNGIEVKLRNKESEVLALLCECYPDPVSRDKIENSIWT 95

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           +    V  NTL Q IS +R       D  H LI T+P++G+ +  +        + +  +
Sbjct: 96  DS--YVTDNTLTQTISNLRNALN---DKKHELIITIPKKGYCLGFEPKFL-LCNDDNHSS 149

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKIL 150
            +         N   +  + G  +FN  ++
Sbjct: 150 LSEIKSVTNIENENAQVYLSGRFSFNYIVM 179


>UniRef50_A3UR88 Putative transcriptional activator ToxR n=3 Tax=Vibrionales
           RepID=A3UR88_VIBSP
          Length = 280

 Score = 85.2 bits (209), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 66/134 (49%), Gaps = 10/134 (7%)

Query: 9   IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68
           I F P   ++    N + ++ +    +R L LLL+  P++V +QD  +  W  E   +  
Sbjct: 2   IRFDPIKNRIY---NDERSIKIGYRETRVLELLLKKSPEIVRKQDIISFAWGSE--FIGD 56

Query: 69  NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFK-IHNDINIQNHVINSSTDAHTHNAPP 127
            +L + IS++R+GF  +G    + I TVP+ G++ I   + I++     +T   T   P 
Sbjct: 57  TSLAKCISLLRQGFVKLG-IKETPIVTVPKVGYRLIDGCVLIESQPQIGATTPLT---PV 112

Query: 128 AIKVNAGYKESIGG 141
           +  ++  +  S+G 
Sbjct: 113 SDHISLSHTSSLGN 126


>UniRef50_Q15PB9 Lysine decarboxylase transcriptional regulator, CadC n=1
           Tax=Pseudoalteromonas atlantica T6c RepID=Q15PB9_PSEA6
          Length = 756

 Score = 84.8 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 10/227 (4%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + I D     P ++    + + +    L   A   L+ L +   DVV+Q+D   +VW++ 
Sbjct: 5   YWIGDFFVNLPRNQ----ITHNEHTQTLPPKALAVLTYLAKHQGDVVSQEDLLNQVWKD- 59

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
              V  N+L + I+ +R+ F   G     LI T  ++G+ +   I  ++H   +  D+ T
Sbjct: 60  -TVVSPNSLQRCIAQLRKAFGDDG-KAQGLIKTHAKKGYSLEAAIRWEDHQKRNVGDSVT 117

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
            +  P    +A    +      F+ K +  +    +++ A VI   S   LW ++   P 
Sbjct: 118 LDKSP-PNQHAKLGTNKVVKAGFSAKHIFVLSLFTVLVFALVISITST--LWPSSVHNPS 174

Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPW 229
                 + +I         +         K+        + C  H W
Sbjct: 175 PASPLLIDDIRLLTSTDNRELASAYSPDGKFIVFQRFPEVMCTSHLW 221


>UniRef50_B1J1E8 Two component transcriptional regulator, LuxR family n=3
           Tax=Pseudomonas putida RepID=B1J1E8_PSEPW
          Length = 330

 Score = 84.8 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 7/86 (8%)

Query: 25  DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84
              V L   A   L+ L++A   VV + + F+ VW   G  V  N L   IS++R+ F A
Sbjct: 20  GKPVPLGGRAFEVLATLIKAKGRVVGKDELFSEVWA--GTVVEDNNLQVQISLLRKAFGA 77

Query: 85  VGDTTHSLIATVPRRGFKIHNDINIQ 110
            G     LI TVPRRG+++  D+ + 
Sbjct: 78  PG-----LIQTVPRRGYRLAVDVVLD 98


>UniRef50_C1M6R9 Predicted protein n=2 Tax=Citrobacter RepID=C1M6R9_9ENTR
          Length = 227

 Score = 84.8 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 81/241 (33%), Gaps = 28/241 (11%)

Query: 29  VLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDT 88
            L   A++ L  LL+   ++ ++ +    V++  G R     L Q+IS +R+   + G  
Sbjct: 3   TLNNVATQLLLYLLQNGKEISSRDEILRNVFQHNGARATDANLNQHISFLRKAITSTGH- 61

Query: 89  THSLIATVPRRGFKI-HNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNN 147
              LI T+PR GF++    INIQ                  ++ +      +  A     
Sbjct: 62  PAELIVTIPRIGFRMSDASINIQ-----------------QLEESQAPTRIVNVALTPRK 104

Query: 148 KILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGL 207
           K        +  L   +    +A+  W  N+            +   C  ++  + +   
Sbjct: 105 KKRNLWPVTITTLITGIAVLATAWLTWIPNEIAMTDAAILRTIDYEQCRVHILGNALTDT 164

Query: 208 KEFDKYKTRILDSGI--NCKKHPWLYFPLAKSSPGMI----VMACNKNYNQHEVANCLTL 261
               K        GI  NC     LY     S+  ++       C  N   +   +C++ 
Sbjct: 165 ITEKKALDIFKSVGINPNCSYPKDLYLNTWASNHNLVEWSFAAECGLNLGYY---HCISQ 221

Query: 262 S 262
            
Sbjct: 222 Y 222


>UniRef50_C2HYC0 Transcriptional activator ToxR n=1 Tax=Vibrio cholerae bv. albensis
           VL426 RepID=C2HYC0_VIBCH
          Length = 275

 Score = 84.8 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/211 (18%), Positives = 83/211 (39%), Gaps = 7/211 (3%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           + +I+  +++F      L   +       L+   +R L LL++    VV++       W 
Sbjct: 8   LIYILEGSVKFSVIDSTLTYGNKNHH---LSYTETRILELLIKNSGSVVSKIQLIEYSWT 64

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
             G  V   +L ++IS IR+ FR   +     I T+PR G+++    N+    ++ +++ 
Sbjct: 65  --GKVVAETSLAKSISNIRKVFREC-EFHDDAIQTIPRLGYRLSLRSNVYEEKMDETSNL 121

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                  AI  +   +  I  A ++     K I S+L+            Y   +++   
Sbjct: 122 IFLEETKAISDSLAPRAMIKYADSYLGINFKKIISYLVCFILLSASVTFLYETIHSSHSN 181

Query: 181 PFFKDYKTVA-EINGCHFNVTEDTIDGLKEF 210
               DY+ ++  I    + V ++    +   
Sbjct: 182 FIDADYEKISIHIENKKYIVIKNKNSNIPSR 212


>UniRef50_Q7BQU1 Sea17 n=1 Tax=Serratia entomophila RepID=Q7BQU1_9ENTR
          Length = 239

 Score = 84.5 bits (207), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 97/266 (36%), Gaps = 36/266 (13%)

Query: 5   INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64
           +ND + F    R L        ++ L+  ++R LS L+     ++ + D    VW++  +
Sbjct: 2   LNDLVHFNDNTRVLCR---GVQSIELSLSSARLLSRLIITPNKLIRRDDLLNDVWDKFNL 58

Query: 65  RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHN 124
               + L +NIS++R+ F  +     + I T+P++GF +   + + +  +       +  
Sbjct: 59  TPSDSNLNKNISLLRKAFTDL--RIENSIETMPKQGFMLVLTVKVLSGDL-------SEV 109

Query: 125 APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFK 184
              + KV           K F+ +    I +  IM  AF    + A +  +         
Sbjct: 110 PLSSEKVEG------STVKKFHRQWFIIIFALEIMYVAFFSYIFKAAYDNH--------- 154

Query: 185 DYKTVAEINGCHFNVT-EDTIDGLKEFDKYKTRILDSGINCKK-HPWLYFPLAKSS---- 238
           ++    ++  C   VT    I  ++ F K  +   +    C+  H  +Y   +K      
Sbjct: 155 NFSYFTQVGLCDVYVTQSAKIKSIETFIKSSSG-KNVMRRCENTHKIVYIDDSKLDVENL 213

Query: 239 -PGMIVMACNKNYNQHEVANCLTLSY 263
                V  C+          C    +
Sbjct: 214 KKETFVAVCDGT-KSSGRNECKNYVF 238


>UniRef50_A1JQP0 Membrane protein n=15 Tax=Enterobacteriaceae RepID=A1JQP0_YERE8
          Length = 199

 Score = 84.5 bits (207), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 72/179 (40%), Gaps = 14/179 (7%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + +   + F P  R L     +   V+LT    R L LLL     V  ++    +VW+E+
Sbjct: 8   FKLEGTVLFSPAQRCLNGPDGS--VVILTENNLRFLQLLLNG---VTEKEQIINQVWKEQ 62

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN-----IQNHVINSS 117
              V  ++ Y  + ++R+ F  VG    SLI T+PR+G +    ++      +     +S
Sbjct: 63  RGAVSESSYYGQLYMLRKAFLQVG-LKESLIHTIPRKGVRYTGSVSKIAVCKEPQEQQNS 121

Query: 118 TDAHTHNAPPAIKVNAGYK---ESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL 173
           TD     A P +          E+I   +         ++S+       ++  +S  WL
Sbjct: 122 TDMQQMPALPDVSQLTTLPLPIENIAPQEFPAQNKQSFLQSYRWKKLISLLAFFSFCWL 180


>UniRef50_Q1YZ13 Transcriptional activator CadC n=1 Tax=Photobacterium profundum
           3TCK RepID=Q1YZ13_PHOPR
          Length = 509

 Score = 84.5 bits (207), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 74/199 (37%), Gaps = 17/199 (8%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
           DN  F P   K I     + +VV+    S  L  L +      ++ +    VW   G  +
Sbjct: 9   DNWIFIPSENKCIL---DERSVVIDNRLSNLLLFLCQHPHQTFSRDELINEVW--NGSFL 63

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN-SSTDAHTHNA 125
               + Q+I  +R+  ++     H  I T+P+RG+K+  ++ IQ+  ++    +  T NA
Sbjct: 64  TDQVITQSIFELRKILKSNQRHPHGYIITIPKRGYKLDAEVEIQDDSLSTEDNNQDTENA 123

Query: 126 PPAIKVNAGYKESIGGAKNFNNKIL-----------KHIKSHLIMLSAFVIGAYSAYWLW 174
              +      KE++      ++              +  +  LI     ++ A  A   +
Sbjct: 124 HALLNTAHTNKEAVREVPQPSSAPSYQKEREAAHQRRSSRGKLIAFCCLLLVATLASLFY 183

Query: 175 NNNQPKPFFKDYKTVAEIN 193
               P+      +  + + 
Sbjct: 184 YVKTPESRATSTRKFSSLE 202


>UniRef50_Q5E5W5 Transcriptional regulatory protein n=2 Tax=Vibrio fischeri
           RepID=Q5E5W5_VIBF1
          Length = 285

 Score = 84.1 bits (206), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 47/243 (19%), Positives = 82/243 (33%), Gaps = 14/243 (5%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M+ II  N+   PE R L +       V+L         LLL+     V++   F   WE
Sbjct: 1   MHKIIIANLVLEPESRTLTNQF--GHKVMLRPLPYEVFRLLLDQQGKSVSRDQLFNVCWE 58

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
             GM V    L   IS +RR    +    +  I TV + G+ +  +  I      +    
Sbjct: 59  --GMVVTDQALTNVISNLRRNLVQL-KAENVTIKTVSKIGYLLAIEQPITIVENTNEIAP 115

Query: 121 HTHNAPPAIKVNAGYKE---SIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177
               + P+   N   K+   +   A     ++L       +    F++       ++   
Sbjct: 116 LKKQSEPSSVANKIKKKEAFNRKTADAILKQLLTKPSVKSVSCCFFLVAMIIVGVVYQRY 175

Query: 178 QPKPFF--KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGI-NCKKHPWLYFPL 234
              P F   +      +N   F +   T +     +K K+ I    +  C     +Y  +
Sbjct: 176 ISIPHFLVSNNYEHFSVNNTDFYLLNKTKEKTD-IEKIKSGIESLNLAECNA--NVYIRM 232

Query: 235 AKS 237
             S
Sbjct: 233 YDS 235


>UniRef50_B9TBN5 Putative uncharacterized protein n=1 Tax=Ricinus communis
           RepID=B9TBN5_RICCO
          Length = 231

 Score = 83.7 bits (205), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 2/122 (1%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
            +N          +L+    +  +V L+  A R L+LL +A   +V ++  F + W   G
Sbjct: 74  TLNGRWRLDELSNELVDPA-SGASVALSPIAVRLLTLLADAPNTIVGRRQLFDQGWRRYG 132

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
           + V  N+L Q I  +R  F  +G    S I TVPR G+ +   +  +     ++      
Sbjct: 133 IEVCENSLNQVICALRTAFARLGPEAPS-IRTVPRIGYSLVAQVAGRADRAPAAQVVAPD 191

Query: 124 NA 125
             
Sbjct: 192 RE 193


>UniRef50_A4CYI6 Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 7805
           RepID=A4CYI6_SYNPV
          Length = 209

 Score = 83.7 bits (205), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 72/211 (34%), Gaps = 15/211 (7%)

Query: 10  EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69
            F P+     +   ++    L+   ++ L  L++   ++V+++      W   G  V  N
Sbjct: 10  IFDPQK---ATYSTSEKTSRLSKSETKILQYLIDNCGEIVSRETLLQIGWP--GKFVVPN 64

Query: 70  TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST---DAHTHNAP 126
           +L  +I  +R+ F        ++I T+  +GF I +D  I++ +   +    D  + +  
Sbjct: 65  SLNVSIGNLRKAFGQ----DRAIIITIKDKGFTIKDDNFIRHPIEPEAIRECDPESDDVQ 120

Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDY 186
            +        +         +     I  + +++   + G       W +        D 
Sbjct: 121 YSASEEEEASDIEQEISPRQSLPTWKIVCYSLLILVILFGVALGLGSWKSPPCVTINSDL 180

Query: 187 KTVAEINGCHFNVTEDTIDGLKEFDKYKTRI 217
               +I    +       + L   D   T +
Sbjct: 181 TICGDI---KYLNINKLTENLPRNDATYTHV 208


>UniRef50_Q2NVH3 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str.
           'morsitans' RepID=Q2NVH3_SODGM
          Length = 251

 Score = 82.2 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 14/174 (8%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           +I     F+P+ R L           L    S  L+LL   +P+ V   +F   VW   G
Sbjct: 16  VITSCFTFYPKKRCLEL---EGTIHQLRKKESEVLALLCRKYPNPVHHSEFLDEVWG--G 70

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
             V ++++ Q I  +R+  +  G    ++I T+P+ G+++  +            D    
Sbjct: 71  GYVTSHSIAQVIRSLRKLLKKNG---KNIILTIPKLGYRLGIEPQYDEGNEVKIFDFSQE 127

Query: 124 NAPPAIKVN------AGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171
           NA  + + +        +  +        +  +      L++       +Y  Y
Sbjct: 128 NAGNSAEEDYFVSSGDRHPSTPPPRLYQTSGKVVKWFFRLLIFMLLFPASYGVY 181


>UniRef50_Q1ZVU4 Putative uncharacterized protein n=1 Tax=Photobacterium angustum
           S14 RepID=Q1ZVU4_PHOAS
          Length = 262

 Score = 82.2 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 84/223 (37%), Gaps = 12/223 (5%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            + IN  ++F  +   L    ++    +LT   SR L+LLLE   ++V++++  T  WE 
Sbjct: 7   NYQINH-VKFDSKKGLLS---DSCQQHLLTYTESRLLTLLLERQNEIVSKEELKTFAWE- 61

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
               V  ++L ++I+ IR+           +IATVPR G+++  +    +          
Sbjct: 62  -HTVVTDSSLTKSIAKIRQSLSTY-FPNDEIIATVPRVGYRLDLEKTSFSEDKLEHEVET 119

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
           +   P    V    ++       F        +  L++  A +  +    +    N  + 
Sbjct: 120 STVLPSENNVGYQAQKL-----PFKKSFFIIKRGLLVLSIALLAYSGFNLFRKLPNDYRK 174

Query: 182 FFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINC 224
           F  +  +  +I    F             +K K  + +   NC
Sbjct: 175 FLNNDYSAIDITNNGFTHRIIKPKSFIIPEKIKAILAEKKCNC 217


>UniRef50_C6D9U3 Transcriptional regulator, CadC n=5 Tax=Pectobacterium
           RepID=C6D9U3_PECCP
          Length = 261

 Score = 81.8 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/266 (17%), Positives = 89/266 (33%), Gaps = 15/266 (5%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++IN+ I F      L  +   +  + L+ P SR LSLL+E     +++        E
Sbjct: 1   MVYLINELIIFNEGEGTLTWIERENEAISLSFPISRLLSLLIENQRVTLSRDFLLKEALE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI-----QNHVIN 115
           +  +    N L   +S++R+  R         I T+P+ G   + +  +           
Sbjct: 61  KHALSPSINNLNNYLSLLRKVLREFDLADS--IVTIPKLGIVFNVESVVSYPEADRGGGE 118

Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWN 175
             T           KV     +        ++ I + IK+        +  A     L+ 
Sbjct: 119 KETSHQVVEENVEEKVEEDVYQEKKPFSIKHHAISEPIKTQQYTRCLLIWIAIVGVILFA 178

Query: 176 NNQPKPFFKDYKTVAEING-CHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPL 234
            +    F   +    +++G C      D++      D       ++     K   +    
Sbjct: 179 LDNANRFPYRHLVDVKMSGKCDLFYLYDSVGYPLPTDYENLCSENTLFFLSKK--IVISG 236

Query: 235 AKSSPGMIVMACNKNYNQHEVANCLT 260
                  IV++C KN +      C+T
Sbjct: 237 MLDKKSEIVISCKKNGS-----GCVT 257


>UniRef50_Q2S7R1 DNA-binding winged-HTH domains n=1 Tax=Hahella chejuensis KCTC 2396
           RepID=Q2S7R1_HAHCH
          Length = 706

 Score = 81.0 bits (198), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 38/173 (21%), Positives = 65/173 (37%), Gaps = 13/173 (7%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            + I     F P ++ +         V         L+LL+     VV  ++FF +VWE 
Sbjct: 29  EYNIAGVWLFNPRNQTIARADGLVHQVR--AKTCDVLALLIRHHDRVVTTEEFFDQVWE- 85

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQN------HVIN 115
            G  V  N L ++I  +R  F    D +   IAT P+RG+++   + +          + 
Sbjct: 86  -GRFVGENVLKRSIFELRHIFE---DKSRDYIATAPKRGYRLKAAVALVRPDPPEPETMT 141

Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY 168
               A    AP  + V+     +I  A  ++   LK +      L   + G  
Sbjct: 142 PPASAEAEQAPSDVTVSPAPVATIPTASWYSRLDLKRLAVGGFFLFLLIWGMT 194


>UniRef50_B2VDV6 Putative transcriptional regulatory protein n=1 Tax=Erwinia
           tasmaniensis RepID=B2VDV6_ERWT9
          Length = 266

 Score = 80.2 bits (196), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 96/267 (35%), Gaps = 13/267 (4%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           II DN+       +++S       V+L   A RC   L +A   V++Q+      W   G
Sbjct: 5   IIIDNLLMLDGRTRMLSRIPDGKGVMLPASACRCFIALAQAKEQVLSQEQLMDVGWRHSG 64

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
           + V  N++   I+ IRR   A+       +  V R G+++     I        T   T 
Sbjct: 65  VEVTDNSVRVMITKIRRALIALEVNDSVQLIAVTRSGYRL-----IVRTEQPDITRRTTS 119

Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFF 183
            + P + V+ G       A   +  + + + +    L      A +  WL         +
Sbjct: 120 ASNP-LHVSTGLVSRHVSAYRAHRFLRRRLAAGAAGLVLGSCLAAAVSWLLAIKPTPINY 178

Query: 184 KDYKTVAEINGCHF----NVTEDTIDGLKEFDKYKTRILDSG--INCKKHPWLYFPLAKS 237
             +               N++ D    ++    Y+   ++    IN +   +LY     +
Sbjct: 179 VRWHGAETPPQTEVWVPGNISPDKQRVVQTLQLYRQYAINKNGDINPEHARYLYITTGGA 238

Query: 238 SPGMIVMACNKNYNQHEVANCLTLSYR 264
           SP + ++AC          NC + S++
Sbjct: 239 SPDLGLIACVAPLR-DSENNCESYSFK 264


>UniRef50_B5FHC5 Putative transcriptional regulator n=14 Tax=Salmonella enterica
           RepID=B5FHC5_SALDC
          Length = 146

 Score = 79.8 bits (195), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 4/124 (3%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFP-DVVAQQDFFTRVWEE 61
           ++IN    +  +  +L ++      + +     +CL  +L     +++ ++     +W E
Sbjct: 4   YLINSTHTYNDKTNELKNIKTG-KMIKIAAMRIKCLEYMLNHAQQEIIYKKQLTNELWGE 62

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
               +    L Q + ++RR  +  G +     +TVPR G K+  +I I N   +    + 
Sbjct: 63  RSQFISDANLTQILYLLRRDLKGFGLSQ--FFSTVPRTGIKVDANIIISNENKSCLPSSL 120

Query: 122 THNA 125
              A
Sbjct: 121 KKEA 124


>UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q022A1_SOLUE
          Length = 605

 Score = 79.5 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 27  NVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVG 86
            V L   A   L +L+E   +VVA+QD  + VW +    V  + L  NISI+RR      
Sbjct: 1   MVALEPKAVEVLLILVEKRGEVVARQDLMSAVWPD--TFVEESNLSSNISILRRQLGTPP 58

Query: 87  DTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
           D     I T+P+RG++    +N     + ++T   + 
Sbjct: 59  DGG-DYIQTIPKRGYRFVAAVNQAGSELEAATAEVSE 94


>UniRef50_C9QE85 Putative uncharacterized protein n=1 Tax=Vibrio orientalis CIP
           102891 RepID=C9QE85_VIBOR
          Length = 280

 Score = 79.5 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 39/260 (15%), Positives = 86/260 (33%), Gaps = 10/260 (3%)

Query: 7   DNIEFWPEHRKLISVHNAD---LNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
             I+F     +  +   ++     V+L       L  LL       ++++ F + W   G
Sbjct: 2   KAIQFSSLKLECETRTLSNGFGNKVILRPLPYEVLVFLLL-KGAPASREELFEKCWG--G 58

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
             V    L   IS +RR F  +     + I T+ + G+ +  ++ +   +    T   T 
Sbjct: 59  AVVTDQALTNVISDLRRHFFVLNAKEIN-IQTISKVGYFLDVEVEVIEALEPVQTIEDTT 117

Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFF 183
           +      V   ++            I  + K+  +++ A +    + +         PF 
Sbjct: 118 DVELNPSVTPSHQSQEMANHAPKRDI--NFKASYLLVFALIAMIAATFIFEPFKPRSPFT 175

Query: 184 KDYKTVAEINGC-HFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMI 242
              + V  ++G   F + + T   + +    +     S  NC    ++    +   PG+I
Sbjct: 176 DLSQYVQLLDGSPTFYLMDGTNGSIDKAFLTEQLGKASLANCSADVYIRVFPSIYEPGVI 235

Query: 243 VMACNKNYNQHEVANCLTLS 262
            M           ++     
Sbjct: 236 AMTVRLKSKTSAHSHVFQHF 255


>UniRef50_Q12IZ6 Transcriptional regulatory protein-like protein n=2 Tax=Shewanella
           RepID=Q12IZ6_SHEDO
          Length = 580

 Score = 79.5 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 35/203 (17%), Positives = 72/203 (35%), Gaps = 5/203 (2%)

Query: 19  ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78
             V +  L V L   + R LS+L EA P +V+Q+    +VW +  + V   TL Q I ++
Sbjct: 31  TLVRDDKLEVRLPWLSYRLLSVLCEAAPGIVSQEQLLEKVWPD--VVVGDETLKQRIKLL 88

Query: 79  RRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKES 138
           RR       T    I  +  RG+++   + + + V  +   +        +       +S
Sbjct: 89  RRALNDDAHTP-IYIEAIRGRGYRLLPQVIVTSEVTPTRMTSLDLANDTHVMPED--GKS 145

Query: 139 IGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFN 198
                   +  L  +     +++ F+    +   L  N         +     + G  + 
Sbjct: 146 YPLFWKLTSLSLAALMLIFALVALFISSGDNLAKLDENAPSSLASPGFDVELYLKGLDYY 205

Query: 199 VTEDTIDGLKEFDKYKTRILDSG 221
                 D L   + + + +  + 
Sbjct: 206 HRYREADNLHAIELFTSALAINP 228


>UniRef50_B8CR40 Transcriptional activator CadC n=1 Tax=Shewanella piezotolerans WP3
           RepID=B8CR40_SHEPW
          Length = 512

 Score = 78.3 bits (191), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 69/191 (36%), Gaps = 19/191 (9%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + I DN  F P   +L+     +  +++    S  L  L +     +++ +    VW  +
Sbjct: 6   YRI-DNWFFVPHENRLVL---DEQEILIDNRLSNLLLFLCDNPRTTLSRDEIIDHVW--K 59

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHV--------- 113
           G  +    + Q I  +R+  +         I TVP+RG+K+  D+ + N V         
Sbjct: 60  GSILTDQVITQAIFELRKILKTNNQHLQGYIITVPKRGYKLDTDVEVVNEVKTAPTVLNA 119

Query: 114 ----INSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYS 169
               + S+ +  ++ A      +    E+        +       S L ++ A +  A  
Sbjct: 120 AHKIVESNAEQKSNFAAKEATKHKKATENEEPTTAVESAKSVRFSSSLAIVGALIAVAVL 179

Query: 170 AYWLWNNNQPK 180
             +    +  K
Sbjct: 180 VVFFNRADIGK 190


>UniRef50_A4EHZ3 Integral membrane protein-like n=1 Tax=Roseobacter sp. CCS2
           RepID=A4EHZ3_9RHOB
          Length = 675

 Score = 77.9 bits (190), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 55/142 (38%), Gaps = 8/142 (5%)

Query: 10  EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69
            F  +      +  A   V L   +++ LSLL++     V + D  + VW++  + V  +
Sbjct: 11  LFTYDTGLDCLLDEAGNQVSLRPQSAQVLSLLVDNIGQTVTKDDLISTVWQD--VSVTDD 68

Query: 70  TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAI 129
           +L Q I+ +RR     GDT   ++ T P+ G+++       +    +     +  A    
Sbjct: 69  SLTQCIADVRRAL---GDTDRRILKTRPKVGYQLSPTHQDTDQPETALMGGQSSGANAVS 125

Query: 130 K---VNAGYKESIGGAKNFNNK 148
               +   + +         N+
Sbjct: 126 ALVCIQPAHPKVQLALTTIKNE 147


>UniRef50_D2T7N3 Probable regulatory protein embR n=3 Tax=Erwinia RepID=D2T7N3_ERWPY
          Length = 299

 Score = 77.9 bits (190), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/177 (16%), Positives = 63/177 (35%), Gaps = 13/177 (7%)

Query: 4   IIND-NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           IIN  +++F      L+   + +    L     + L +L E     V++++    VWE  
Sbjct: 6   IINHWSVDF--ASGTLLHQSSGEQR-RLGEYQLKLLRVLAENAGKAVSREELNNLVWERR 62

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
              +  N+L   I  +R      G     +I T+P++G+ +  +       +   TD   
Sbjct: 63  --VIGNNSLPNAIHALRIALEDDG-KQQRIIRTMPKKGYILEAEFCEFITPLRPETDLAE 119

Query: 123 HNAPPA------IKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL 173
            ++P          V A +  +         +   H   + ++    V+      W+
Sbjct: 120 AHSPREPFGDAKPVVLAPHTPAAAPQPEHRQRPSVHPLWYWLVPLQVVVLITLLVWI 176


>UniRef50_C7BJM7 Putative uncharacterized protein n=1 Tax=Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949 RepID=C7BJM7_PHOAA
          Length = 178

 Score = 77.9 bits (190), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/176 (14%), Positives = 60/176 (34%), Gaps = 11/176 (6%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            ++I  N+ F      + S       + L +  +  L L  +   +V+ +      VW  
Sbjct: 3   DYVIGRNVFFNSLKCNISST---VQEITLGSREASLLELFCKNPNEVINKTQIHESVWGA 59

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH-----NDINIQNHVINS 116
             + V   +L + +S +R+      D T   I T+P+ G+        ++  I+ +++  
Sbjct: 60  --VIVNETSLTKAVSNLRKALSGFDDLTCE-IKTIPKEGYIFIIGEKLDNWCIKENLLPK 116

Query: 117 STDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYW 172
                       + V +             +K   ++   +I+ S F     +   
Sbjct: 117 EVSLSFSRQDKKMDVVSDELSLQNSISPAVSKSFLNLVYIVILSSLFSSVITTGLI 172


>UniRef50_A6CY17 DNA-binding transcriptional activator n=2 Tax=Vibrio shilonii AK1
           RepID=A6CY17_9VIBR
          Length = 529

 Score = 77.9 bits (190), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 56/140 (40%), Gaps = 8/140 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
           D+  F+P   K +       ++V+    S+    L E    V ++ +    VW   G  +
Sbjct: 11  DDWVFYPYEDKFVL---HGEDIVIDNRLSKLFHFLCENPDTVFSRDELINEVW--NGSIL 65

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN--IQN-HVINSSTDAHTH 123
               + Q I  +R+  +  G+  +  I TVP+RG+K+   +   I+    +  +TD+ + 
Sbjct: 66  TDQVITQAIFELRKILKQHGNHPYGYIVTVPKRGYKLDATVEKVIETPQPVIETTDSVSE 125

Query: 124 NAPPAIKVNAGYKESIGGAK 143
                   +A     I   +
Sbjct: 126 KIDVLRDESAPETTDIVLPE 145


>UniRef50_Q1IKQ5 Lysine decarboxylase transcriptional regulator, CadC n=1
           Tax=Candidatus Koribacter versatilis Ellin345
           RepID=Q1IKQ5_ACIBL
          Length = 945

 Score = 76.8 bits (187), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 24/141 (17%), Positives = 53/141 (37%), Gaps = 1/141 (0%)

Query: 20  SVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIR 79
           S+     +V L       L LLLE   ++V++++   R+W  +      + L   I  +R
Sbjct: 24  SLTKGGASVRLQDQPFEVLGLLLERPGEIVSREEIRQRLWSSDTFVEFDDGLNTAIKKLR 83

Query: 80  RGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESI 139
                        + TVPRRG++    +++ + V     ++ T +   A +  +    + 
Sbjct: 84  TALGDSALNPR-FVETVPRRGYRFIAPVSVLSPVATPEPESQTEDVVIASRERSQITITQ 142

Query: 140 GGAKNFNNKILKHIKSHLIML 160
                F + +   +    +  
Sbjct: 143 PHHPVFWSTVALGLAISFLAG 163


>UniRef50_A1S359 Putative transcriptional regulator, CadC n=1 Tax=Shewanella
           amazonensis SB2B RepID=A1S359_SHEAM
          Length = 729

 Score = 76.4 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 55/142 (38%), Gaps = 5/142 (3%)

Query: 15  HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74
            R +I+ + +D  + L     + L  LLE     V++ +    VW   G +V  N + + 
Sbjct: 17  ERCVIAKNGSDTKLELRVM--QVLVCLLERAGRPVSRDELIREVW--RGGQVSDNAINRI 72

Query: 75  ISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAG 134
           I+ +R         +  +I TVP+ G+ +  ++      + + +D    +  P       
Sbjct: 73  IAQLRSALGD-DARSQQVIQTVPKVGYLLIAEVEPLEGQVITPSDLTHSSEVPNAAAPVA 131

Query: 135 YKESIGGAKNFNNKILKHIKSH 156
             +     +  ++ +   IK  
Sbjct: 132 PIDIEDNQQRSSSTMSPDIKPV 153


>UniRef50_C4K826 Putative regulatory membrane protein n=1 Tax=Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)
           RepID=C4K826_HAMD5
          Length = 137

 Score = 76.0 bits (185), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 55/123 (44%), Gaps = 8/123 (6%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M  I   N  F P+ R +         + +    S  L LL + +P+ +++++   ++W 
Sbjct: 1   MKNIFIGNSLFIPKTRVI---KQEGREIKIRNKESELLFLLCKKYPNHISREEIEKQIWT 57

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           +    V  NTL Q IS +R G     D  H +I T+P++G+ ++ +    +       + 
Sbjct: 58  Q--TYVTDNTLTQTISNLRNGLN---DKKHEIIITIPKKGYCLNIEPKFIDDEKIKIENL 112

Query: 121 HTH 123
           ++ 
Sbjct: 113 NSD 115


>UniRef50_A8GFV8 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568
           RepID=A8GFV8_SERP5
          Length = 299

 Score = 76.0 bits (185), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 15/150 (10%)

Query: 16  RKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNI 75
           R L  +  +     L     + LSLL+   P++V++ +    +W  +G     +T+ Q I
Sbjct: 10  RNLDVLTPSREKFRLRWKEYQILSLLVARSPELVSRTEIIENIW--KGTYCSDSTINQTI 67

Query: 76  SIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN----------IQNHVINSSTDAHTHNA 125
             IR+    +GD  H+LI T+PR G+K+ N             + + + N  +DA+    
Sbjct: 68  KSIRQ---KIGDAEHTLIRTIPRLGYKVENKAVFHFISEEDEYVADEIWNIESDANKDIQ 124

Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKS 155
               + +    E I        +++  + S
Sbjct: 125 AELSESDNKDDEIITEEIERPEEVVAPVSS 154


>UniRef50_Q12K29 Transcriptional regulatory protein-like protein n=2
           Tax=Alteromonadales RepID=Q12K29_SHEDO
          Length = 604

 Score = 75.6 bits (184), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 26/195 (13%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +  N+  EF  E   L     + L + +    ++ L+LLLE    V+++ D  + VW+
Sbjct: 1   MNYRFNE-FEFDSESLLLT---KSGLTLAIRHNEAKVLALLLERADKVLSKDDILSHVWQ 56

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
                V    ++QNIS +R          +  I T P+RG++       Q   +  + D+
Sbjct: 57  NR--PVSEQAVFQNISHLRSIL------GNQAIKTFPKRGYQW------QLETVRVTPDS 102

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
            +   P    V   Y+     + N   + L    + ++M+S   + A+   W        
Sbjct: 103 QSSTIP----VRTQYQPLPVPSHNKRPRWLYFALASMLMVS---VLAFYLPWPDQQENTH 155

Query: 181 PFFK-DYKTVAEING 194
                 Y  + ++NG
Sbjct: 156 SRISIAYIPMTQLNG 170


>UniRef50_D0X6S7 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3
           RepID=D0X6S7_VIBHA
          Length = 222

 Score = 75.6 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 9/160 (5%)

Query: 14  EHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQ 73
           +      +  +     +TT  S  L  L+     VV++       W    +    N+L  
Sbjct: 26  QQHACELIVESGKRYNITTKESDVLKTLVTNLGKVVSKDALIRAAWGNPEIIGS-NSLPV 84

Query: 74  NISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNA 133
            IS +R+      +     I  VPR+G+++     ++      S       A   +  + 
Sbjct: 85  AISNLRKVL----EPEKIKIVNVPRQGYQLE----VECMGSGESNSEQAEEATEQVVASK 136

Query: 134 GYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL 173
             + +    +   NKI        ++   FV   +S  W+
Sbjct: 137 PERNTSKRIETNTNKISVICAWLSLLYVMFVASYFSFSWV 176


>UniRef50_Q3JM80 Transcriptional regulatory component of sensory transduction system
           n=1 Tax=Burkholderia pseudomallei 1710b
           RepID=Q3JM80_BURP1
          Length = 151

 Score = 75.2 bits (183), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 2/107 (1%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            ++I ++I+F P+  KL    + D  + LT+ ++R LS+      +++ +      +W  
Sbjct: 44  RFLIANSIDFDPKTGKLHIASSPDA-IPLTSLSARLLSIFCTFPGNIIDRDIIMEILWAS 102

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108
            GM V  NTL + IS +R     V +     I+T+ R G+    D+ 
Sbjct: 103 RGMIVTDNTLTKAISHLRIKLN-VANKDIKFISTLNRIGYIFVADVT 148


>UniRef50_A5L7Z6 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium
           SWAT-3 RepID=A5L7Z6_9GAMM
          Length = 294

 Score = 75.2 bits (183), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/150 (19%), Positives = 59/150 (39%), Gaps = 7/150 (4%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           +IND +      R ++++ N    + L     R L  L       V++ + F+  W   G
Sbjct: 8   VINDELHINLSDRSIMNIENK-TLIKLRPKPFRVLLYLHNHNGRCVSKDELFSECW--NG 64

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
             V   +L   IS +R+  + +G    + + TV + G+ +     I N  +         
Sbjct: 65  AIVSDQSLTNTISTLRKSLKTIG-IKKTKLTTVSKAGYLLE---KISNEELPEPHLPTET 120

Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHI 153
           +    I+ +     +I GA +  +  ++ I
Sbjct: 121 SLTSEIQEDDTIAAAIDGATSEVSVPVEVI 150


>UniRef50_A0KFN3 Transcriptional regulatory protein, C terminal n=2 Tax=Aeromonas
           RepID=A0KFN3_AERHH
          Length = 186

 Score = 75.2 bits (183), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 8/170 (4%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            + I + I F      +  +   + ++ L+   +  L +L +    V+ +      +W  
Sbjct: 5   NYKIAEEIFF---SAAIFRLSKGEKDIKLSNKEAELLEMLCDEAGSVIPRSKLQDALWPN 61

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
           +        L + I  +RR   + G      I T+PR G+     I        ++ +  
Sbjct: 62  QDN--TDTNLNRQILSLRRKLESFGLM--DAIDTIPRVGYIFCAPIEAAGETEEAAPNEE 117

Query: 122 THNAPPAIKVNAGYKESIGG-AKNFNNKILKHIKSHLIMLSAFVIGAYSA 170
           T  A P+    A  + +     + F+ K +      L+ L++  I  Y+ 
Sbjct: 118 TQAANPSHAPQARRQYTRRKYDRYFSPKRILLFALLLVSLTSLAIVIYNY 167


>UniRef50_Q1Z6E8 Transcriptional activator of cad operon n=1 Tax=Photobacterium
           profundum 3TCK RepID=Q1Z6E8_PHOPR
          Length = 509

 Score = 74.8 bits (182), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 8/143 (5%)

Query: 9   IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68
           I F P+  ++        ++ L    +R L+  +E   +VV  Q    RVW+     V  
Sbjct: 15  IIFSPDKNQITI---NGEDIHLEPLQARLLTFFIEQQGNVVNAQQIADRVWDRSH--VSD 69

Query: 69  NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPA 128
           N + Q IS++R   +      +S+I T+P++G+  +  I +  +    +   H+  A   
Sbjct: 70  NLVRQVISLLRSQLQD-KTRPYSIIKTIPKQGYLFN--IEVTKNYTPQTNINHSILATEN 126

Query: 129 IKVNAGYKESIGGAKNFNNKILK 151
              +      I       + + K
Sbjct: 127 SAEDNQLAIQIESRLQPESALQK 149


>UniRef50_A6D0K2 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
           RepID=A6D0K2_9VIBR
          Length = 233

 Score = 74.8 bits (182), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 73/211 (34%), Gaps = 12/211 (5%)

Query: 8   NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
           NI   P +  L    +      L +     L  L  A    + +Q      W   G  V 
Sbjct: 6   NITLNPNNGHLA--EDGLTIAKLNSSERLILEALCNAQGHPLTKQQLLDVGWP--GKIVV 61

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN------SSTDAH 121
            N+L   I  IR     VG      + TVP  GF++  ++ +  + +       SS  A+
Sbjct: 62  ANSLNVAIRNIRTALDKVGLVM--CLETVPTIGFRLDPNVILITNDVPFVSVNVSSASAN 119

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
            ++A  +       +E               +   + +++ +    + A  ++  +  KP
Sbjct: 120 DNDASSSELAAQPVEECPSPNDTVATPTRFELVKKVPLMALYAALLFCALVIFYVSSIKP 179

Query: 182 FFKDYKTVAEINGCHFNVTEDTIDGLKEFDK 212
               YK         F++ ++T+  L +  +
Sbjct: 180 SMHTYKRGNTTLVGSFSLPDNTVHALSKETE 210


>UniRef50_B1KFP5 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC
           51908 RepID=B1KFP5_SHEWM
          Length = 725

 Score = 74.4 bits (181), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 63/180 (35%), Gaps = 8/180 (4%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            + + D +   P    ++S  N    + +   A + L  L+    + V++      VW  
Sbjct: 6   RYRLADKVV-DPAQCTILSDGN---LLKVELRAMQVLLCLINHAGEPVSRDMLLDEVW-- 59

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
            G  V  N + + I I+R        +    I T+P+ G+ +   I +   V      A 
Sbjct: 60  SGGEVSDNAINRIIGILRNQLGDNAKSPE-FIKTLPKVGYVLIAPITLVKEVTKHEKFAT 118

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
              A   ++V    +  +     F        K  ++M     +  +S Y + +N   + 
Sbjct: 119 EVIAGAELEVEESKR-LVFKRSLFATLYQHAGKMSILMAGLLSLLLFSVYQISHNESSES 177


>UniRef50_Q1ZPU0 Putative uncharacterized protein n=7 Tax=Photobacterium
           RepID=Q1ZPU0_PHOAS
          Length = 224

 Score = 74.4 bits (181), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 9/137 (6%)

Query: 11  FWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNT 70
           F P+     +    D    L+   ++ L  L++   +++++       W ++   V  N+
Sbjct: 11  FEPQK---SAYSTPDTTTKLSASETKILQYLIDNNGEIISRDKLLEIGWPDK--VVVPNS 65

Query: 71  LYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIK 130
           L   I+ +R+ F+    T H +I T+   GF I  +  IQ+ +         H       
Sbjct: 66  LNVAIANLRKAFK----TKHEIIITIKGAGFTIAKNTFIQHQIQPEIVSDSDHITTSQNT 121

Query: 131 VNAGYKESIGGAKNFNN 147
             +  KE        NN
Sbjct: 122 TASLNKEESVTTSLDNN 138


>UniRef50_B2VID6 Putative uncharacterized protein n=1 Tax=Erwinia tasmaniensis
           RepID=B2VID6_ERWT9
          Length = 192

 Score = 74.4 bits (181), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 8/115 (6%)

Query: 8   NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
           +  F P+ R L      D+ V L    +  L+LL   +P+ V+++DF   VW   G  V 
Sbjct: 14  DFIFNPKTRTL---QKNDIKVQLRKKQADVLNLLCTKYPEPVSREDFLAGVW--NGGYVT 68

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
           T ++ Q I  +R     + DT   +I T+P+ G++       ++   ++  +   
Sbjct: 69  TQSIAQVIRSLR---LDLDDTNKKIIVTIPKLGYRFTVRPLYEDSTADNKENEDN 120


>UniRef50_Q12S47 Transcriptional regulatory protein-like protein n=1 Tax=Shewanella
           denitrificans OS217 RepID=Q12S47_SHEDO
          Length = 762

 Score = 74.4 bits (181), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 79/247 (31%), Gaps = 28/247 (11%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + I           ++      + + ++   A   L+ L E    VV+       VW  +
Sbjct: 5   YSIGGFFI-DLSRNQIT---QNNQSQIIAPKALAVLTYLAENQGKVVSHDALLENVW--Q 58

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI----NIQNHVINSST 118
           G  V  NTL ++I+ +R+     G      I T  ++G+ +  D+    NI++  +N++ 
Sbjct: 59  GTVVSPNTLQRSIAQLRKALGDDGKV-QVYIKTHAKQGYSLECDVRWHDNIESPPLNAAQ 117

Query: 119 D--------------AHTHNAPPAIKVNAGYKESIGGAK--NFNNKILKHIK-SHLIMLS 161
           +              A + +   +   +  + +    +     N K  K        +  
Sbjct: 118 ENIVDTPTMSETNALAMSEDNTQSKAQHHSHDKDQSKSATTTDNAKPSKLTVMPLFTLFG 177

Query: 162 AFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221
             ++      +L      K  F + + +   +   F            F +Y      + 
Sbjct: 178 IIILAYIGYQYLMPQPPSKLSFGELRLLTTTDNKEFASIYSPDGQYVVFHRYSAVFCRNN 237

Query: 222 INCKKHP 228
           I  K   
Sbjct: 238 IWAKNTK 244


>UniRef50_B2JV11 Transcriptional regulator, winged helix family n=2 Tax=Burkholderia
           RepID=B2JV11_BURP8
          Length = 966

 Score = 74.4 bits (181), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 20  SVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIR 79
            V      V + + A   L+LL+ A  D+V++ +    VW      V  N L  +IS +R
Sbjct: 54  DVRLDGRKVPIGSRAFDILALLIAARGDLVSKDEIMRAVWPT--TVVEKNNLQVHISALR 111

Query: 80  RGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESI 139
           R F          IATVP RG+++     +  H    + DA +      + + A  + + 
Sbjct: 112 RAFGD----ERERIATVPGRGYRLIMQAELGAHAAP-TRDAASEREATGMSLPAVSEAAR 166

Query: 140 GGAKNFNNKILKHI 153
              +    ++ + I
Sbjct: 167 PARRPLPARVPELI 180


>UniRef50_Q47YD8 Putative transcriptional regulator n=1 Tax=Colwellia
           psychrerythraea 34H RepID=Q47YD8_COLP3
          Length = 712

 Score = 74.4 bits (181), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 7/179 (3%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++  ++I    +++ LI       +++L       L    +    ++ + +    VW 
Sbjct: 1   MRYLEFNHITIDTQNQLLIR---DGESIILAPKVYDLLIFFCKNPARIITKDELMDEVWT 57

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
             G  V  N + + +  +R+        +   I TVPR+G+++  + N  +     +   
Sbjct: 58  --GTLVTENAISRTLVKVRKALGD-DPKSPQFIITVPRKGYRMVTEFN-GSDKCQYNEQN 113

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179
            T       + N     S     +  NK  K + S   +    +I A S Y+    N  
Sbjct: 114 TTEQTSTNKENNNTITTSFSSVNSTKNKKPKTLFSLFAISCTLLIVAVSFYFSIQQNIE 172


>UniRef50_D0FT15 Conserved uncharacterized protein n=1 Tax=Erwinia pyrifoliae
           RepID=D0FT15_ERWPY
          Length = 214

 Score = 74.4 bits (181), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 64/188 (34%), Gaps = 24/188 (12%)

Query: 8   NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
           +  F P+ R L +    +  + L    +  L LL   +P+ V+Q+DF    W   G  V 
Sbjct: 14  DFTFNPKARTLKNR---EKTIQLRKKQADVLILLCAKYPEPVSQKDFLAGAWG--GGYVT 68

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH------ 121
             ++ Q I  +R     +     ++I T+P+ G++     + +  V+N   +        
Sbjct: 69  PQSIAQVIRSLRLSLDDI---NKNIIVTIPKLGYQFTAKPSDEEPVMNDHLENMTSKSRM 125

Query: 122 ----------THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171
                     T +    I       E+ G  K    +    ++         ++     +
Sbjct: 126 GENRTAYETCTEDGEKIIYSGLTINEASGVKKTHTPRKNFKLRKAFFYSMVVMLAVLLLH 185

Query: 172 WLWNNNQP 179
                + P
Sbjct: 186 LFVAQSAP 193


>UniRef50_P23890 Transcriptional activator cadC n=99 Tax=Enterobacteriaceae
           RepID=CADC_ECOLI
          Length = 512

 Score = 74.1 bits (180), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 58/175 (33%), Gaps = 12/175 (6%)

Query: 17  KLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNIS 76
            +  +      + L       L    +   +V+++ +    VW+     V  + + Q+IS
Sbjct: 16  SINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS--IVTNHVVTQSIS 73

Query: 77  IIRRGFRAVGDTTHSLIATVPRRGFKI---------HNDINIQNHVINSSTDAHTHNAPP 127
            +R+  +   + +   IATVP+RG+K+              I         +A      P
Sbjct: 74  ELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSP 133

Query: 128 AIKVNAGYKESIGGAKNFNNK-ILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
           +  +N     +        +K           +LS  +  A  A+   +   P  
Sbjct: 134 SHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMS 188


>UniRef50_D1RR55 Transcriptional regulator, CadC n=1 Tax=Serratia odorifera 4Rx13
           RepID=D1RR55_SEROD
          Length = 301

 Score = 74.1 bits (180), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 16  RKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNI 75
           R L  +  +     L     + LSLL+   P++V++ +    +W  +G     +T+ Q I
Sbjct: 10  RNLDVLTPSREKFRLRWKEYQILSLLVARSPELVSRTEIIENIW--KGTYCSDSTINQTI 67

Query: 76  SIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI 109
             IR+    +GD  H+LI T+PR G+K+ N    
Sbjct: 68  KSIRQ---KIGDVEHTLIRTIPRLGYKVENKAAF 98


>UniRef50_B2JV05 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia
           phymatum STM815 RepID=B2JV05_BURP8
          Length = 658

 Score = 73.3 bits (178), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 6/103 (5%)

Query: 25  DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84
              V +   A   L LL+EA   +V+++    R+W E    V  N L  ++S +R+    
Sbjct: 20  GKPVRIGNRAFDMLELLIEAQGGLVSKEAILERIWPES--VVGDNNLQVHMSALRKLLGD 77

Query: 85  VGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPP 127
               +  LI T+P RG+++     I  H   +++      A P
Sbjct: 78  ----SRDLIKTIPGRGYRLVRGAAIVRHADTAASYVERQTAAP 116


>UniRef50_Q2C4S0 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34
           RepID=Q2C4S0_9GAMM
          Length = 262

 Score = 73.3 bits (178), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 47/220 (21%), Positives = 83/220 (37%), Gaps = 14/220 (6%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            N+ F      L    N +   VL    ++ L +LL    ++V ++      W  +   V
Sbjct: 8   KNVTFCSNRAVL---SNGEKQQVLNFTEAKLLEILLSKANEIVLKETLKEFAW--QHTVV 62

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI-HNDIN-IQNHVINSSTDAHTHN 124
             ++L ++I+ +RR   A       LI T+PR G+K   +D+  + N   +      T +
Sbjct: 63  TDSSLTKSIAKLRRAL-AFFFEDEELIITIPRVGYKFVSHDVEPVANVDTSIEESLITKD 121

Query: 125 APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFK 184
                     YKE     ++  +K+L  +   LI  S F     +   L      +   +
Sbjct: 122 DLTGNVQLTDYKEKNKFKQSVCSKVLLTLSILLIAGSLF-----NFLRLIPTKNEQVIAE 176

Query: 185 DYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINC 224
            Y   A  +G  F+ T  T  G++   K    +     NC
Sbjct: 177 GYHITALTSG-GFSHTVITRKGIELDPKLSFLLSQQKCNC 215


>UniRef50_B4SI58 Transcriptional regulator domain protein n=3 Tax=Stenotrophomonas
           RepID=B4SI58_STRM5
          Length = 774

 Score = 73.3 bits (178), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 29/151 (19%), Positives = 60/151 (39%), Gaps = 3/151 (1%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           V  A   + LT  A   L +L+     VV +++ F  VW +       + L Q ++ +R+
Sbjct: 30  VEGARRPLRLTPKALGVLRVLMRQPGRVVTREELFAEVWPD--TLPTNDVLTQAVTQLRK 87

Query: 81  GFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN-SSTDAHTHNAPPAIKVNAGYKESI 139
            F    D   + I T+ + G+++   + + + V      DA     P     +A    ++
Sbjct: 88  VFANDDDNGQAYIETIAKSGYRLLVPVLVLDDVAPVVEVDAVPEVMPALAGASAIPTATV 147

Query: 140 GGAKNFNNKILKHIKSHLIMLSAFVIGAYSA 170
             A +  +   +  +  L +L   ++ A   
Sbjct: 148 LPAPSRRSGWRQLRRQLLWVLGVLMLAALVV 178


>UniRef50_C5EUU3 Two-component response regulator n=5 Tax=Bacteria
           RepID=C5EUU3_9FIRM
          Length = 223

 Score = 73.3 bits (178), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 5/84 (5%)

Query: 24  ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83
            +  V L+ P  + L +LL+     V ++    +VW+  G  V  NTL   I  +R    
Sbjct: 145 GNEEVTLSQPEYQVLLVLLQNKGRTVPREMLLEQVWDSNGNYVNNNTLTVTIKRLRGKLH 204

Query: 84  AVGDTTHSLIATVPRRGFKIHNDI 107
                  S + T+   G+++ + +
Sbjct: 205 Q-----PSCLKTIRSFGYRMEDSV 223


>UniRef50_B1KK09 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC
           51908 RepID=B1KK09_SHEWM
          Length = 711

 Score = 72.9 bits (177), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 37  CLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATV 96
            L LL++   + V++      +W      V  N++ Q I+ +R+  +     T   I TV
Sbjct: 39  LLKLLIKHHGEAVSRNLIMDEIW--HDTIVSDNSVSQAITQLRKSLQD-DKGTPRFIRTV 95

Query: 97  PRRGFKIHNDINIQNHVIN 115
           PR G+++   I       +
Sbjct: 96  PRVGYQLIATIEEVKEPES 114


>UniRef50_Q2SHD7 Probable transcriptional regulator n=1 Tax=Hahella chejuensis KCTC
           2396 RepID=Q2SHD7_HAHCH
          Length = 487

 Score = 72.9 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 29  VLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDT 88
            L+    + L  L E     V+++    +VW E    V    L   I  +R+ F    + 
Sbjct: 31  QLSDKVCKVLLALAENPGRTVSRETLIQKVWNE-NEYVGEQALNTAIWQLRKAFNDSSEA 89

Query: 89  THSLIATVPRRGFKIHNDINI 109
               I T+P++G+++  ++++
Sbjct: 90  PE-YIETIPKKGYRLLKEVSV 109


>UniRef50_A6U8S7 Transcriptional regulator, winged helix family n=1
           Tax=Sinorhizobium medicae WSM419 RepID=A6U8S7_SINMW
          Length = 922

 Score = 72.9 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 49/136 (36%), Gaps = 5/136 (3%)

Query: 8   NIEFWPEHRKLISVHNADLNVVL--TTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65
              F P     + +      V L     A R L  L+E    +V+Q++     W   G+ 
Sbjct: 5   RFTFGPFELDPLRLELRRDGVKLRVGAKACRLLLALVERPGHIVSQKELLAAAW--SGLN 62

Query: 66  VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125
           V    L  +I  +R+    V +   + I TVPR G+     +++          +     
Sbjct: 63  VEDVNLRVHIVALRKALSGVANGAFN-ITTVPREGYVFAGPVSVSAAPAIEMPASPPARV 121

Query: 126 PPAIKVNAGYKESIGG 141
           P  +    G +E++  
Sbjct: 122 PRQLSTLFGRREALAN 137


>UniRef50_A5VGJ6 Transcriptional regulator, CadC n=1 Tax=Sphingomonas wittichii RW1
           RepID=A5VGJ6_SPHWW
          Length = 382

 Score = 72.9 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 7/127 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
                 PE R+L+      + V L       L+LL+     +V +  F + VW++  + V
Sbjct: 9   GQFVLDPEDRRLLR---DGVPVELNARYLDALALLVRNAGSLVGKDRFLSEVWKD--VPV 63

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126
               L Q I ++R+         H  I TVP+ G++   +++ +     +  DA  H  P
Sbjct: 64  TDEALTQCIRLLRQRLGDDASRPH-FIETVPKHGYRFIAEVDWRESSAPAE-DAAPHTLP 121

Query: 127 PAIKVNA 133
           P+   +A
Sbjct: 122 PSAAPSA 128


>UniRef50_Q89V41 Bll1217 protein n=2 Tax=Bradyrhizobium japonicum RepID=Q89V41_BRAJA
          Length = 516

 Score = 72.5 bits (176), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 7/107 (6%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +   +N+        L  +  A + V L       L  L+     VV++ D  +++W 
Sbjct: 1   MRFCFENNVL----DGDLRELTCAGVAVPLQPQVFDLLLYLVAQRARVVSKDDLISQIWS 56

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI 107
           +    V  + L   I+  R+     G T   LI T+PR+GF+   ++
Sbjct: 57  DR--IVSDSALNSRINAARKALGDDGATQR-LIKTIPRKGFRFIGEV 100


>UniRef50_A8T8X6 Putative transcriptional regulator ToxR n=3 Tax=Vibrionales
           RepID=A8T8X6_9VIBR
          Length = 285

 Score = 72.5 bits (176), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 73/203 (35%), Gaps = 17/203 (8%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           MY I   NI   P+H  +  +  ++    +       + +L E    +  +++  TR W 
Sbjct: 1   MYKI--KNILIHPDHPLVTDLTTSEEK-RIGYHDHLVILMLCENAGKITTKEELLTRAWP 57

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND-----------INI 109
             G  V   +L Q+IS IR      G T   L  TV + G+K+ +D           + +
Sbjct: 58  --GKHVSEGSLTQSISTIRNLIEDDGKTQKHL-KTVAKIGYKLESDAVSLQGKVDDGLEM 114

Query: 110 QNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYS 169
           +   +  +    T             K +       +    K  ++H+ M         +
Sbjct: 115 ETIPLVDAPAPDTETLESIKIEEQCSKVANPKVTIPDQNHFKFNRNHIYMAIGCFFVVVA 174

Query: 170 AYWLWNNNQPKPFFKDYKTVAEI 192
             + +   Q +P +  +  +A++
Sbjct: 175 VIFPFYLTQREPDYSGWLHLAKM 197


>UniRef50_B5R4U2 Possible transmembrane regulator n=37 Tax=Enterobacteriaceae
           RepID=B5R4U2_SALEP
          Length = 254

 Score = 72.5 bits (176), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 88/263 (33%), Gaps = 26/263 (9%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++++  + F      L    + +  + ++   +  L      +  +  ++D    VWE  
Sbjct: 16  FLLDKRVVFDSTKMTL---SHGNEIIRISEAETHLLLAF---WHGLYKKEDIIHLVWENR 69

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
           G  V  ++ Y+ I+ +R  F ++G      I T PR G  +   I               
Sbjct: 70  GGCVSESSYYKLINQMRNDFSSIGLQPSD-IVTRPRVGVSLSVAI-------------EP 115

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
                ++KV+    +     +    KI +H    ++  +  +   Y  + ++        
Sbjct: 116 IKKITSLKVSDENVKGPSTREKIFYKIKRHSVFVVLTGAILLALLYGVFTIYKAPVRNSP 175

Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMI 242
              +  + E N      T++    L E   +    L   I  +    LY       P M 
Sbjct: 176 DSFFTYLGEYNDYAIYKTKEDKVTLSEV-VFAFNSLKIKIYRQNGRHLY---YIREPNMN 231

Query: 243 VM-ACNKNYNQHEVANCLTLSYR 264
           +   C     +  V  C+T+  R
Sbjct: 232 IFLQCLNPV-EMAVPKCITVKER 253


>UniRef50_B7VJ79 Transcriptional regulator n=6 Tax=Vibrionaceae RepID=B7VJ79_VIBSL
          Length = 462

 Score = 72.1 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 26/173 (15%)

Query: 9   IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68
           I F+P+  +L+        + L    +R LS  ++    VV+ Q     VW+    +V  
Sbjct: 15  ISFYPDKNQLVI---DSEEIHLEPLQARLLSYFIDKRGQVVSTQQIAADVWQR--TQVSD 69

Query: 69  NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPA 128
           N + Q IS++R   +      + +I T+P++G+       I+    +  T       PP 
Sbjct: 70  NLVRQVISLLRSQLQD-KVRPYRIIQTIPKQGYLFD----IEIIQPSVETTPVVEIPPPE 124

Query: 129 IKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
           IKV +  K                 K+  ++ +A       A W W  +    
Sbjct: 125 IKVVSKPKN----------------KTIALITTAVFSIGLIATWAWQIDVSTN 161


>UniRef50_A3CKZ7 Two-component response transcriptional regulator (CheY-like
           receiver and winged-helix DNA-binding domains), putative
           n=7 Tax=Firmicutes RepID=A3CKZ7_STRSV
          Length = 226

 Score = 72.1 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 2/83 (2%)

Query: 24  ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83
            + +V L+      L LLL     +  +++ F +VWEE       NTL  ++S +R+   
Sbjct: 146 GEKSVRLSKKEYHILQLLLRHPKKIYTKEELFEQVWEE-SYLPGDNTLNTHLSNLRKKLA 204

Query: 84  AVGDTTHSLIATVPRRGFKIHND 106
            + D T   I TV   G ++  D
Sbjct: 205 QL-DPTEEYIETVWGLGVRLKED 226


>UniRef50_Q1Z6V5 Putative uncharacterized protein n=1 Tax=Photobacterium profundum
           3TCK RepID=Q1Z6V5_PHOPR
          Length = 285

 Score = 71.8 bits (174), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 76/250 (30%), Gaps = 29/250 (11%)

Query: 11  FWPEHRKLISVHNADLNVV---LTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
           F      L+    +   +    L+   +  LS L++    +V +      VWEE+   + 
Sbjct: 10  FNATKNTLVHNGGSSGEIKTFSLSPKEADVLSYLIDNASKLVTKDALVEHVWEEQ--ELN 67

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPP 127
             ++   +S +R  FR   +    LI T+ ++G+          ++       +   +  
Sbjct: 68  EQSILNVMSKLRSIFRQFDEG--ELIKTIRKKGYVFEVSPEDVQYIRIELAKENPVLSES 125

Query: 128 AIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFF---- 183
            I               +     +++ S L +L+   +     Y   + N     +    
Sbjct: 126 EIAEAPQ--------PVYQYLFSRYLWSVLFILTIIFLVIGGYYQYLSKNNDYDAYEINQ 177

Query: 184 KDYKTVAEINGCHFNVTEDTIDG----------LKEFDKYKTRILDSGINCKKHPWLYFP 233
           KD   +   +G    V   +  G          + +F +Y   +         +  +Y  
Sbjct: 178 KDIIYINNPDGEFVKVIFSSRGGSLTKRQYKDVIDKFSQYYHAVQTLPPESITYKTVYVD 237

Query: 234 LAKSSPGMIV 243
           +         
Sbjct: 238 VFHIHKTFFA 247


>UniRef50_Q1MK68 Putative adenylate cyclase n=1 Tax=Rhizobium leguminosarum bv.
           viciae 3841 RepID=Q1MK68_RHIL3
          Length = 522

 Score = 71.8 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 46/101 (45%), Gaps = 7/101 (6%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           I+ND +    E   L         + L   A   L  L++    +V++ +    VW   G
Sbjct: 25  ILNDKVVVDLEGETL--RLENGDAIALRPQAFAVLRHLVQNANRLVSKAELLEAVWG--G 80

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104
             V  ++L Q I  IRR     GD  ++++ATV RRG+++ 
Sbjct: 81  AAVTDDSLVQCIHEIRRAL---GDERYAVLATVSRRGYRLS 118


>UniRef50_B6EJP4 Putative uncharacterized protein n=1 Tax=Aliivibrio salmonicida
           LFI1238 RepID=B6EJP4_ALISL
          Length = 302

 Score = 71.8 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 92/261 (35%), Gaps = 33/261 (12%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M  I   N+   P  R+L   +NAD  ++L        +LLLE   + + + + F   WE
Sbjct: 1   MQKITIVNLVLEPATRRLS--NNADDAIILRPLPYNVFTLLLEQKGNCIDRDELFDVCWE 58

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS--- 117
             G  V    L   IS +RR    + +     I TV + G+ +  D  +    +      
Sbjct: 59  --GAIVTDQALTNVISGLRRNLIQL-EAEGIAIKTVSKVGYLLTVDETVVMQPVIEPKII 115

Query: 118 TDAHTHNAPPAIKVNAGYKE---------------SIGGAKNFNNKILKHIKSHL--IML 160
                +  P A+ V+   ++                +   +   +++    K  L   ++
Sbjct: 116 PPVIDNIEPKAVLVSPQAEDPLRVHDNVAISNDVQVLPTTEVGRSRVRLLTKPSLKSALI 175

Query: 161 SAFVIGAYSAYWLWNNNQPKPFF---KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRI 217
           +  +    +A   +      P+F   ++Y    EI    F +  +T  G    +  ++ +
Sbjct: 176 AFCLCSLIAAVCWYEKASSVPYFLVKENYNH-FEIKNTDFYILNNT-RGKDNIEAIQSGL 233

Query: 218 LDSGI-NCKKHPWLYFPLAKS 237
               +  C     +Y  +  S
Sbjct: 234 ESLNLVECNAE--IYIRMYDS 252


>UniRef50_B7VRN4 Putative uncharacterized protein n=2 Tax=Vibrio splendidus
           RepID=B7VRN4_VIBSL
          Length = 265

 Score = 71.4 bits (173), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 89/256 (34%), Gaps = 23/256 (8%)

Query: 10  EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69
              P  R+ ++  N   +  L +   + L  L +     V++       W   G  V   
Sbjct: 13  ILNPTLRRQLTNKNDGTSKKLHSTDCKILETLCKHKGRTVSKSALTNAAWP--GRVVSKA 70

Query: 70  TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAI 129
           +L Q+I+ +R      G    ++I TVP+ G+ +  D+      I ++ +  + + P   
Sbjct: 71  SLTQSIAHLRIALGDNGR-EQNIIKTVPKHGYSLVEDLVEIEIPIINTQNNQSTDGPTTT 129

Query: 130 KV--NAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYK 187
           +       KE +   K+F N     +    ++L +        Y+     + +   +DY 
Sbjct: 130 QELLKIEVKEQVFFLKHFQN--FTLLVLSCLLLLSISWLTQLIYYNSTTERIEWGQRDYL 187

Query: 188 TVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACN 247
                 G  +  T +        D +K               LY      +P    ++C 
Sbjct: 188 ------GVTYFFTNNQNG----EDHFKAFKGKYT---NNLRMLYLS---DNPETFYISCT 231

Query: 248 KNYNQHEVANCLTLSY 263
              N+  + N + +S+
Sbjct: 232 YQLNRSHMRNTMNMSF 247


>UniRef50_B3PJR7 Putative Transcriptional regulator CadC n=1 Tax=Cellvibrio
           japonicus Ueda107 RepID=B3PJR7_CELJU
          Length = 499

 Score = 71.4 bits (173), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 9/148 (6%)

Query: 20  SVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIR 79
           S+ + D  V L       L + ++   +V+ ++     +W  +G  V  ++L   IS +R
Sbjct: 34  SLSSGDQRVELEHRLVALLLMFIDHPGEVLEKERILATIW--QGKVVNDDSLAVAISHLR 91

Query: 80  RGFRAVGDTTHS--LIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKE 137
           +     GD   S   I T+P  G++             +            +    GY  
Sbjct: 92  KAL---GDNPRSPRYIKTIPGVGYQFIASAAPVEEAPATPAPVPEAAPLNPVIAERGYPH 148

Query: 138 SIGGAKNFNNKILKHIKSHLIMLSAFVI 165
                       +  + + L++L+A+  
Sbjct: 149 RR--FPRSPGLWIPILLACLVLLTAWYA 174


>UniRef50_A8AKG2 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae
           RepID=A8AKG2_CITK8
          Length = 317

 Score = 71.4 bits (173), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 24/192 (12%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
           Y+ +N+ +   P    L           L     + L  L++    +  +++  T VWE 
Sbjct: 5   YYSVNNWLVDIPSGSILHL--TTGERKRLGEYQLKLLETLMQDAGKIFTREELTTLVWER 62

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND----INIQNHVINSS 117
               +  N+L   I  +R      G     +I T+P++G+ +  D    I  +   +   
Sbjct: 63  R--VIGNNSLPNAIHALRTALEDDG-KKQKIIKTIPKKGYLLEPDYCCFIEKEESEVRDP 119

Query: 118 TDAH---THNAPPAIK------------VNAGYKESIGGAKNFNNKILKHIKSHLIMLSA 162
            + H     NAP  +             V     + +        + +K       +   
Sbjct: 120 EENHLPLEENAPSDLAGEYEVVDETSLPVAEQANDIVRVTPPATTRPVKKSIHWTTVFLL 179

Query: 163 FVIGAYSAYWLW 174
             + A  +    
Sbjct: 180 LALTAIGSILFT 191


>UniRef50_A3UTR1 Transcriptional regulator CadC n=1 Tax=Vibrio splendidus 12B01
           RepID=A3UTR1_VIBSP
          Length = 652

 Score = 71.4 bits (173), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 5/98 (5%)

Query: 10  EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69
            F P+  KLI     D +V++    S+ L+   +    V ++ +    VW   G  +   
Sbjct: 14  LFIPDEDKLIM---NDEDVIIDNRLSKLLNFFCQNPKIVFSRDELINEVW--NGSILTDQ 68

Query: 70  TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI 107
            + Q I  +R+  +A    +   I TVP+RG+K+  D+
Sbjct: 69  VITQAIFELRKILKAAERHSMGHIITVPKRGYKLDVDV 106


>UniRef50_Q988M4 Mll6677 protein n=1 Tax=Mesorhizobium loti RepID=Q988M4_RHILO
          Length = 168

 Score = 71.0 bits (172), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 3/89 (3%)

Query: 19  ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78
             +   D  V L + A   L  LLE   ++V++Q+   RVW +  + V    L  +IS +
Sbjct: 41  FLLLEGDKPVPLGSRALGILIALLERPGELVSKQELMARVWPD--VFVVPTNLTVHISAL 98

Query: 79  RRGFRAVGDTTHSLIATVPRRGFKIHNDI 107
           RR  R  G   +  I  +P RG++    +
Sbjct: 99  RRVLRD-GRDGNRFIINIPGRGYQFVASV 126


>UniRef50_D2M1X4 Two component transcriptional regulator, winged helix family n=1
           Tax=Bacillus cellulosilyticus DSM 2522
           RepID=D2M1X4_BACS4
          Length = 225

 Score = 71.0 bits (172), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 49/97 (50%), Gaps = 5/97 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
           DN+ F  E + +      D  ++LT   SR L++L+    +VV++      +W++E   V
Sbjct: 133 DNLVFHIEKQVVFC---GDSEILLTKNESRILAVLIRNRGNVVSRTRLMKALWDDESF-V 188

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103
             NTL  N++ +R+   ++  +    I TV   G+++
Sbjct: 189 DENTLTVNVNRLRKKLASL-PSDDDFIKTVKGEGYRL 224


>UniRef50_A4YSP3 Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS278
           RepID=A4YSP3_BRASO
          Length = 1015

 Score = 71.0 bits (172), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 50/116 (43%), Gaps = 5/116 (4%)

Query: 7   DNIEFWP--EHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64
               F P    ++   +  +   ++L       L  L+E   ++V +++    VW +  +
Sbjct: 4   KTFVFGPFQLDQQNALLRRSGERILLAPKPFGVLVHLVERAGELVTKEELLNAVWSD--V 61

Query: 65  RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
            V  ++L   I+ +R        +    I TVPRRG++    + I +H+ + + D+
Sbjct: 62  HVSESSLSVTINALRTALDDNKQSPR-YIETVPRRGYRFIAAVEIAHHLADPARDS 116


>UniRef50_Q1IIR6 Transcriptional regulatory protein-like n=1 Tax=Candidatus
           Koribacter versatilis Ellin345 RepID=Q1IIR6_ACIBL
          Length = 469

 Score = 70.6 bits (171), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 6/186 (3%)

Query: 1   MYWIIN-DNIEFWPEHRKLISVH--NADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTR 57
           M  +I  + + F P    L +         V L       L LL+    ++V + +   R
Sbjct: 1   MTDLIGPNRLRFGPYEADLHTRELWKFGTRVKLVGQPFDILELLISRPGELVTRDELRER 60

Query: 58  VWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN--IQNHVIN 115
           +W +E      + L   ++ +R       D     I T+PRRG++  + +   ++  +  
Sbjct: 61  LWPKETFVDFNHGLNAAVNKLRDVLCDSADDPK-FIETLPRRGYRFISKVERGVEEPIPV 119

Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWN 175
           + T   T    P     A        A      + +   S        V+ A+ A+   +
Sbjct: 120 AETSPPTPLVVPTPAELAPEPRYESPAITVERSLGRTKWSWGAAALLMVVIAFIAFLAIS 179

Query: 176 NNQPKP 181
               +P
Sbjct: 180 KISREP 185


>UniRef50_UPI00016A9165 transcriptional regulator, putative n=2 Tax=Burkholderia
           oklahomensis RepID=UPI00016A9165
          Length = 190

 Score = 70.6 bits (171), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 75/182 (41%), Gaps = 17/182 (9%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            ++I D + F   H   +S+ +A     LT   S  L ++L     ++A+ +    VW +
Sbjct: 15  RYLIEDRVMFDSYH---MSLSHAGRETELTANESALLEMVL---SGMIAKAEVIKHVWGD 68

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN-DINIQNHVINSSTDA 120
           +G+ V  ++ +Q +  +R         + +LI T+PR+G K     + + +   ++   A
Sbjct: 69  KGVIVTDSSYHQLVRSLRTRLEE-HQLSGALIKTLPRQGLKFMGFAVRLADDRQSADAGA 127

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFN---------NKILKHIKSHLIMLSAFVIGAYSAY 171
             H       ++AG    +      +          ++L+H +  L+++        + Y
Sbjct: 128 DAHVPVDHSALDAGVPFQLEPEPPLHATDRSPTGLQRLLRHGERILLLVITLWAAMLTWY 187

Query: 172 WL 173
            +
Sbjct: 188 LV 189


>UniRef50_Q2C5Y8 Putative uncharacterized protein n=2 Tax=Photobacterium
           RepID=Q2C5Y8_9GAMM
          Length = 292

 Score = 70.6 bits (171), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 13/247 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            ++ +    R L   H+       T   S    LLL      VA++   ++ W +    V
Sbjct: 13  GSVTYDSSTRTLT--HDNGQTEYFTPRVSDVFLLLLAHQGKCVAKEFLLSQCWGD--TIV 68

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN----IQNHVINSSTDAHT 122
               L   IS +R+ F          I TV + G+ +   ++    +             
Sbjct: 69  SEQALTNVISKLRKVFAK-HALEMITITTVSKSGYLLEVKMDDSCVVDEEKKQVKQQPER 127

Query: 123 HNAPPAIKVNAGYKESIGG-AKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
               P++  +   K +     K+  + IL       +++   +I A+  Y++ +     P
Sbjct: 128 KTIKPSLLSDDIIKVNENDITKSVESNILCRKSVSYLLIILIIITAFLIYYINSVINTTP 187

Query: 182 FFKD---YKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSS 238
           +F D   Y     I        E     + +    K         C  + + +F      
Sbjct: 188 YFIDTNYYIHEINIGSNKVYFNEVDDYDVDKELFIKGITKSLSSVCHSNIYAHFYYNTRI 247

Query: 239 PGMIVMA 245
                + 
Sbjct: 248 ANNSSIV 254


>UniRef50_C3NSU2 Transcriptional activator of cad operon n=39 Tax=Vibrio
           RepID=C3NSU2_VIBCJ
          Length = 519

 Score = 70.6 bits (171), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 11/152 (7%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + IND +    +  KL      D  V         L  L E   +V  +++    VW+  
Sbjct: 6   FQINDWVLCI-DENKLYR---QDREVSAEPRLINLLHFLAEHAGEVFGREELIQHVWD-- 59

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQN-----HVINSS 117
           G  V    + Q+I  +R+  R   +   S + TVP+RG+K+  ++   +          S
Sbjct: 60  GAIVTDQVVTQSIFELRKLLRDGREENLSYVVTVPKRGYKLVANVQRLDGNPYVSRQEES 119

Query: 118 TDAHTHNAPPAIKVNAGYKESIGGAKNFNNKI 149
           T +    A     V     E +  A      +
Sbjct: 120 TASDVCLADDIDDVEDAVPEIVFPAGPLTRAV 151


>UniRef50_Q7MF28 Putative uncharacterized protein VVA0492 n=1 Tax=Vibrio vulnificus
           YJ016 RepID=Q7MF28_VIBVY
          Length = 227

 Score = 70.6 bits (171), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 60/167 (35%), Gaps = 16/167 (9%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + I D I + P    +    N      L    +  L  L+++FP+V+++      +W++ 
Sbjct: 11  YKIGD-IYYSPTSAVI---DNLGELSRLRAREANLLHELIKSFPEVLSRSSIEQTLWKDS 66

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ----NHVINSST 118
                  T+ Q +  +R   + V     +LI T+P++G+ +     ++            
Sbjct: 67  --YATDATINQTVKALRFTLQDV---ERTLIRTIPKQGYSLAIAPVLEENYGTKPSPEPI 121

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVI 165
             H    P           S    +     ++  + S L+  + F+ 
Sbjct: 122 KIHVSTPPDDSAAKKRAPISR---RYLVASVVIALSSFLLAANGFLA 165


>UniRef50_A5P8P2 Transcription activator ToxR n=1 Tax=Erythrobacter sp. SD-21
           RepID=A5P8P2_9SPHN
          Length = 342

 Score = 70.6 bits (171), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           +      V L +     L LL     +++++  F   VW   G+ V    L Q I  +RR
Sbjct: 22  LLRGGEAVELGSRYFDALVLLATHPGELISKTRFMDDVW--RGIPVTDEALTQAIRTLRR 79

Query: 81  GFRAVGDTTHSLIATVPRRGFKIHNDIN 108
                       I TVP+ G++   +++
Sbjct: 80  ALGDEASAPR-YIETVPKHGYRFIAELD 106


>UniRef50_A5KUS7 DNA-binding transcriptional activator n=1 Tax=Vibrionales bacterium
           SWAT-3 RepID=A5KUS7_9GAMM
          Length = 615

 Score = 70.6 bits (171), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 57/141 (40%), Gaps = 8/141 (5%)

Query: 10  EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69
            F P+  KLI + N D  V++    S+ L    +    V ++ +    VW   G  +   
Sbjct: 14  LFIPDEDKLI-MDNED--VIIDNRLSKLLDFFCQNPNIVFSRDELINEVW--NGSILTDQ 68

Query: 70  TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---IQNHVINSSTDAHTHNAP 126
            + Q I  +R+  ++    +   I TVP+RG+K   ++    +    I ++T +      
Sbjct: 69  VITQAIFELRKTLKSAERHSMGYIITVPKRGYKFDVEVKKTVLVPPPIVTNTVSLADTVS 128

Query: 127 PAIKVNAGYKESIGGAKNFNN 147
               V+   + S   + N  +
Sbjct: 129 YDETVSQEQEASPVSSPNSES 149


>UniRef50_A6F962 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36
           RepID=A6F962_9GAMM
          Length = 305

 Score = 70.6 bits (171), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 98/275 (35%), Gaps = 29/275 (10%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +I   PE R +  +  + + V +     R L  LL+     +++ + F   W  +G  V
Sbjct: 13  QHISIDPEMRAITCLL-SSITVNMRPLPFRVLMHLLKNQDKCISRDELFEECW--QGAVV 69

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTD------- 119
              +L   IS IR   + + ++    I T+ ++G+ +   +N +    N + D       
Sbjct: 70  SEQSLTNTISYIRNKIKKL-ESNELKIKTISKKGYSLVITLNHELPENNHNGDLKDRAEE 128

Query: 120 ----------AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSH-LIMLSAFVIGAY 168
                         ++P     + G+   +   +  N   +K +    +      ++ + 
Sbjct: 129 SGETQELDKVIELDDSPGDSDKDNGFNRILSENEKINLPAVKGVYIRGMWFFVNLMLIST 188

Query: 169 SAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGIN-CKKH 227
             + +  NN+    F D K        + +V     DGL    +++  +  S +N C  +
Sbjct: 189 LIFLIAKNNKGNASFMDEKNYQRYELGNIDVYISDPDGLLVEGEFRKELDGSNLNSCDIN 248

Query: 228 PWLYF-----PLAKSSPGMIVMACNKNYNQHEVAN 257
             +Y      P  K +  M      KN     + N
Sbjct: 249 K-VYIRVYSSPYNKDNIAMSAFIITKNSESQNIIN 282


>UniRef50_Q21GQ2 Transcriptional regulatory protein-like protein n=1
           Tax=Saccharophagus degradans 2-40 RepID=Q21GQ2_SACD2
          Length = 425

 Score = 70.6 bits (171), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/172 (18%), Positives = 63/172 (36%), Gaps = 18/172 (10%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +  ND +E   +  ++     A L V +       +  L+E    +V++ + F ++W+
Sbjct: 1   MSFHFND-VEIDTKQYRITC---AGLTVSVEPKVFDIIVYLIENRNRLVSRDELFEKIWD 56

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
                V   TL  +I   R+     G+  H+ I TV  RG++   ++++           
Sbjct: 57  ARA--VSDTTLSNHIKSARKALGDDGEQQHT-IKTVRGRGYQFIAEVSVSALT------- 106

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYW 172
                 P    ++   E     ++ N    K   + LI     V+      +
Sbjct: 107 ----DEPIAASSSAPSERSAPVQSTNRFQPKATIAFLIFGCLCVLTLIGYLY 154


>UniRef50_A7MRS6 Putative uncharacterized protein n=1 Tax=Vibrio harveyi ATCC
           BAA-1116 RepID=A7MRS6_VIBHB
          Length = 253

 Score = 70.2 bits (170), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 55/121 (45%), Gaps = 7/121 (5%)

Query: 2   YWIINDNIEFWPEHRKLISVH-NADLNVV---LTTPASRCLSLLLEAFPDVVAQQDFFTR 57
            ++I+D I F P    + +   N D+ +V   +   A   L  L+++    ++ ++    
Sbjct: 4   KYLIDDCIVFEPLDSLIYTAKPNKDVKIVKYDIGDNAKDILLELIDSDG-CMSAEELLEA 62

Query: 58  VWEE-EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS 116
           VW +   + V   ++ Q +S +R+  + V      +I TVP+RG+ +   + +     + 
Sbjct: 63  VWRKKRNIEVDITSVRQAVSKLRKSLKLVA-PEVDVIKTVPKRGYVLDVHVELFKDDRSD 121

Query: 117 S 117
           S
Sbjct: 122 S 122


>UniRef50_C0Q6W1 Possible transmembrane regulator n=32 Tax=Enterobacteriaceae
           RepID=C0Q6W1_SALPC
          Length = 259

 Score = 69.8 bits (169), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 76/267 (28%), Gaps = 29/267 (10%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            ++I+  +    E   L     A  ++ ++       SLL+  +  +  + D    VW  
Sbjct: 17  NYLIDKRVILDCERMTLSC---AGESITISESER---SLLIAFYEGLFKKDDLINYVWGR 70

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
           +G+ V   + Y+ I+ +R  F  +G    S + T PR G  +   I   +          
Sbjct: 71  KGVVVSDASYYKLINQLRGSFDKIGLKGAS-VVTRPRVGVLLSVSIEPLSDEAQDMPLPA 129

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
                 +          I       N+          +L  F+I            +   
Sbjct: 130 VAETELSTVEVRHDDTIIPPIPGAVNRKDWLYFCLAALLMFFMI-------YKVKGENID 182

Query: 182 FFKDYKTVAEINGCHFNVTEDT----IDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKS 237
           +F         +G  F           D ++ + +    I       +    +Y      
Sbjct: 183 YF---TLNGSYDGYTFYSVGHDKTHLTDIVEAYSEMSNEIHK-----QNGKIIY---YIR 231

Query: 238 SPGMIVMACNKNYNQHEVANCLTLSYR 264
                +     N        C+++  R
Sbjct: 232 VSNTNIFVQCLNQLDIAEPKCISIKER 258


>UniRef50_A8SVV6 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC
           27759 RepID=A8SVV6_9FIRM
          Length = 228

 Score = 69.8 bits (169), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 24  ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83
           +D  + L+    R L LL++    V+ +     ++W++    V  NTL  +I  +R+   
Sbjct: 147 SDEPIKLSVTEYRILELLIKNKGRVLTRDMIIQKIWDDNENYVDENTLNVHIRRLRQKIE 206

Query: 84  AVGDTTHSLIATVPRRGFKIHN 105
                    + TV   G+    
Sbjct: 207 K-DAGNPEYVITVFGIGYTFGE 227


>UniRef50_A4FNN5 Response regulator, two-component system n=12 Tax=Actinomycetales
           RepID=A4FNN5_SACEN
          Length = 237

 Score = 69.8 bits (169), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 2/83 (2%)

Query: 25  DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84
           D  + L       L +L++    VV +++    VW E   +    TL  +IS +RR    
Sbjct: 156 DHEIQLANKEFELLRVLMQHAGQVVTREEILEEVWPEPSRKGSK-TLDMHISWLRRKLGD 214

Query: 85  V-GDTTHSLIATVPRRGFKIHND 106
             G      IATV   GF+ + D
Sbjct: 215 SNGRFDDQRIATVRGVGFRFNAD 237


>UniRef50_Q1IIZ5 Transcriptional regulatory protein-like n=1 Tax=Candidatus
           Koribacter versatilis Ellin345 RepID=Q1IIZ5_ACIBL
          Length = 717

 Score = 69.8 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/133 (16%), Positives = 47/133 (35%), Gaps = 5/133 (3%)

Query: 36  RCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIAT 95
           + L  L     +V++++     VW +    V  + L + IS IRR           +I T
Sbjct: 34  QVLVELAAHSDEVLSKEHLIHAVWSD--TFVSDDVLTRCISEIRRVLDDDARAPK-IIQT 90

Query: 96  VPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKS 155
           +P+ G+++   +         +  ++   A             +  A+     +   I +
Sbjct: 91  IPKSGYRLIAPVVFDKAAPPKNGSSNGSTATVEAATVETPP--LKTAETPRKNLAPWIVA 148

Query: 156 HLIMLSAFVIGAY 168
             ++  A V  A 
Sbjct: 149 VGVLAIAVVYFAI 161


>UniRef50_A4SQG5 Transcriptional activator CadC n=2 Tax=Aeromonas RepID=A4SQG5_AERS4
          Length = 511

 Score = 69.8 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 43/138 (31%), Gaps = 8/138 (5%)

Query: 24  ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83
            D  V L       L  L      V  +      VW+  G  V    + Q+I  +R+  +
Sbjct: 23  PDREVYLEPRLVNLLRFLACHTGTVFGRDALIKEVWD--GAEVTDQVVTQSIFELRKILK 80

Query: 84  AVGDTTHSLIATVPRRGFKIHNDI---NIQNHVINSSTDAHTHNAPPAIKVNAGYKES-- 138
                    I TVP+RG+K+   +    + + ++         N   +        +   
Sbjct: 81  DGRFDATDYIVTVPKRGYKLVASVRPLQVVSLLMADEQPVPAVNPTLSDLSPPATADDDD 140

Query: 139 -IGGAKNFNNKILKHIKS 155
            +  A  F    L    S
Sbjct: 141 ALPNAAPFPAGPLTRAIS 158


>UniRef50_Q1IHU2 Lysine decarboxylase transcriptional regulator, CadC n=1
           Tax=Candidatus Koribacter versatilis Ellin345
           RepID=Q1IHU2_ACIBL
          Length = 323

 Score = 69.8 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 55/148 (37%), Gaps = 7/148 (4%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           +      + L     + L+LLL+    VV +++   ++W  +      ++L   I+ +R 
Sbjct: 64  LRKNGAKLKLQEQPFQVLALLLDRAGQVVTREEIQQKLWPADTFVDFDHSLNTAINKLRD 123

Query: 81  GFRAVGDTTHSLIATVPRRGFKIHNDIN------IQNHVINSSTDAHTHNAPPAIKVNAG 134
                       I T+PRRG++    +       I +    S+T++   +      +   
Sbjct: 124 VLGDTASNPR-FIETLPRRGYRFIAPVEWNEPSVIPSGAAPSATESKDPSRQTEPSIATI 182

Query: 135 YKESIGGAKNFNNKILKHIKSHLIMLSA 162
            +  +  A +   ++L      + ++  
Sbjct: 183 AEPELPQADHRITRLLFGGLQLMYLIFY 210


>UniRef50_C5B7S6 Transcriptional activator CadC n=2 Tax=Enterobacteriaceae
           RepID=C5B7S6_EDWI9
          Length = 548

 Score = 69.4 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 37  CLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATV 96
            LS        V+++ +    VW+     V  + + Q IS +R+  +         I TV
Sbjct: 36  MLSYFAHHPDMVLSRDELIDNVWKRN--IVTNHVVTQCISELRKYLKDGRPEAPEYIVTV 93

Query: 97  PRRGFKIHNDIN 108
           P+RG+K+   + 
Sbjct: 94  PKRGYKLVESVI 105


>UniRef50_C9QI52 Cholera toxin transcriptional activator n=1 Tax=Vibrio orientalis
           CIP 102891 RepID=C9QI52_VIBOR
          Length = 229

 Score = 69.4 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 37/223 (16%), Positives = 78/223 (34%), Gaps = 14/223 (6%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++IND          + S+  + +   +       L+ +      V+++ +    VW + 
Sbjct: 2   FLINDAHVLDENGSYIHSL-KSHIRHPIGVNELSLLNYMFANQGQVLSKHELMHEVWHKR 60

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
           G+ V +++L  +IS  RRG     D    +I T    G++    +     +   +     
Sbjct: 61  GIVVESSSLLHSISTCRRGLE---DKAGEVIRTERGIGYEFTGSVKKITSISEVTEPLEP 117

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
               P IK      E        N   ++ IK+  I++ A  +G   A   + +     +
Sbjct: 118 VIETPPIKELETKVEV---TAQLNAGHIRVIKALGILILAIFVGYIGASHFYKSPLIIGY 174

Query: 183 ----FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221
               +K    + +  G            L +F+K    +  +G
Sbjct: 175 KVTSYKQCSYMPQQQGEKVFYQN---PTLYQFEKLSLLVDSAG 214


>UniRef50_C7E4R8 Transcriptional regulator n=1 Tax=Pantoea stewartii subsp.
           stewartii DC283 RepID=C7E4R8_ERWST
          Length = 288

 Score = 69.4 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/126 (23%), Positives = 55/126 (43%), Gaps = 10/126 (7%)

Query: 11  FWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNT 70
           F P    L ++   D  + L    +  L+LL E +P  V+Q +F + VW+  G  V + +
Sbjct: 18  FIPA---LRTLQRDDTTLQLRKKQTDVLALLCEKYPSPVSQDEFLSEVWD--GCYVTSQS 72

Query: 71  LYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS--TDAHTHNAPPA 128
           + Q I  +R   +   D +  +I T+P+ G+++  +   +  +       D      P A
Sbjct: 73  IAQMIRSLRISLK---DESKKIIVTIPKLGYQLTAEPYWEASLSQPELLPDTLNERTPAA 129

Query: 129 IKVNAG 134
            K+   
Sbjct: 130 RKIELN 135


>UniRef50_Q1MMK4 Putative transcriptional regulator n=1 Tax=Rhizobium leguminosarum
           bv. viciae 3841 RepID=Q1MMK4_RHIL3
          Length = 954

 Score = 69.4 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 47/103 (45%), Gaps = 6/103 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +  F P  + L+     ++ + + + A   L  L+     VV++ + F   W    + V
Sbjct: 15  GDCRFIPARQLLLHR---EVPIRVGSRAIDLLHALVRRPGIVVSKDELFRAAWPN--VFV 69

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI 109
             + L  NI+++RR    V +   + IATVP RG++    + +
Sbjct: 70  DESNLKVNIAVLRRALAQV-EPDLTCIATVPGRGYRFVAPLRV 111


>UniRef50_Q2C702 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34
           RepID=Q2C702_9GAMM
          Length = 267

 Score = 69.1 bits (167), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 49/253 (19%), Positives = 84/253 (33%), Gaps = 36/253 (14%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            N+ + P  R+L S  N   N  LT   +  L++LLEA    + ++  F   W E    V
Sbjct: 9   HNLTYDPVVRRLSS--NDGKNAFLTPKEACVLTILLEAKDQCINKEVLFCGCWGE--TIV 64

Query: 67  PTNTLYQNISIIRRGFRA-VGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125
              +L   IS +R+  ++  GD     I+TV + G+ +                      
Sbjct: 65  TEQSLTNIISKLRKILKSVCGDLI--TISTVIKEGYILE--------------------I 102

Query: 126 PPAIKVNAGYKESIGG---AKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
            P  K+     E++      K   + +    K ++I    F              +  PF
Sbjct: 103 LPETKIEDVSDENLVKEQCCKPATHTMSTDKKRYIICSIFFASFLMIISIYTYYARKSPF 162

Query: 183 FKD---YKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239
           F D   Y     IN   F +   T         +         +C    ++    +  +P
Sbjct: 163 FLDKQEYNITKNINKSRFYLQSMTKKRNASDPLFDALAATIPTDCNLDLFVRIYQSIDAP 222

Query: 240 ---GMIVMACNKN 249
              GM +   N +
Sbjct: 223 EKEGMSIFLVNSD 235


>UniRef50_B8CUZ5 Transcriptional regulatory protein n=1 Tax=Shewanella piezotolerans
           WP3 RepID=B8CUZ5_SHEPW
          Length = 662

 Score = 69.1 bits (167), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 53/130 (40%), Gaps = 11/130 (8%)

Query: 37  CLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATV 96
            L  L     + V++Q  F   W ++   V  + L + +S +RR F+         IAT+
Sbjct: 10  VLQYLASRPGETVSRQVLFEEFWPKQ--VVTEDALNRVMSSLRRLFKDNASNPE-YIATI 66

Query: 97  PRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSH 156
            + G+K+  D+ + N +         +         A  +  I G       +++ +  +
Sbjct: 67  RKVGYKLVADVTVLNALTTEQQATLQNEPALIQATVANEERQIIG-------VMRWLA-Y 118

Query: 157 LIMLSAFVIG 166
           L++ S F+ G
Sbjct: 119 LVIASVFIFG 128


>UniRef50_A3JJ41 Two component Transcriptional regulator, Winged helix family
           protein n=2 Tax=Marinobacter RepID=A3JJ41_9ALTE
          Length = 259

 Score = 69.1 bits (167), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            NI F P   ++           L+   +R   LL+ A+P  ++ +     VW       
Sbjct: 157 GNIRFDPGTLEVALR---GSKTTLSGTPARLFELLVRAYPSFLSHEALTDAVWGAHHGET 213

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
             N+L  +I  +R+  +      + L+ T+  RG+ +  
Sbjct: 214 EGNSLRTHIYTLRKSLQV--GLGNGLVKTIHGRGYSLEA 250


>UniRef50_D0YXS7 Putative uncharacterized protein n=1 Tax=Photobacterium damselae
           subsp. damselae CIP 102761 RepID=D0YXS7_LISDA
          Length = 262

 Score = 69.1 bits (167), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/166 (15%), Positives = 58/166 (34%), Gaps = 5/166 (3%)

Query: 15  HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74
             ++I        V ++       + L E     + +++     W  +G  V  N+L   
Sbjct: 34  TNRIIKRRADSAEVKVSKSEILIFTYLAENKDKTIHRENLLKECW--QGKVVTNNSLTVA 91

Query: 75  ISIIRRGFRAVGDTTHSLIATVPRRGFKIH-NDINIQNHVINSSTDAHTHNAPPAIKVNA 133
           I  +R     + +  ++LI T P+ G+ I+  ++        + +D +           A
Sbjct: 92  IKNLRTALNEIDE--NNLIITEPKLGYAINGANLTHSVLSDLNDSDRNLEIQTLGKNPPA 149

Query: 134 GYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179
             +E      +       H+ + L +L  + IG     ++   +  
Sbjct: 150 NKREIPKKNIDIILPSKNHMVTLLFLLITYFIGMQYFSFIDEKSIN 195


>UniRef50_Q1ZPR1 Transcriptional activator CadC n=1 Tax=Photobacterium angustum S14
           RepID=Q1ZPR1_PHOAS
          Length = 481

 Score = 69.1 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 74/209 (35%), Gaps = 25/209 (11%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            + IND +    E+    S+  +    +L    ++ LS L +    V  + +    VW+ 
Sbjct: 5   NFKINDCLLITTEN----SLKKSGKTYILEPRITKLLSFLAQNQGIVFTRDELIDEVWD- 59

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---IQNHVINSST 118
            G  V    + Q+I  +R+  + + +     I T+P+RG+K+  D+    I  +      
Sbjct: 60  -GAVVSDQVVTQSIFELRKILKKLDE--DHWIITIPKRGYKLDADVQQIYIDPNTGFKLE 116

Query: 119 DAHTHN--------------APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFV 164
           + H+ N              A P  +  +     I  A   N      +   L  +    
Sbjct: 117 EFHSSNEHTNDNSNLGTAFPAGPMTRAFSKPDNDIPPASVSNKISNLMLNHWLFDVGILS 176

Query: 165 IGAYSAYWLWNNNQPKPFFKDYKTVAEIN 193
           +   +  +    N      KD K   +IN
Sbjct: 177 MLVLTLVFASWANNDNAPIKDLKNPRQIN 205


>UniRef50_C7RA75 Transcriptional regulator, CadC n=1 Tax=Kangiella koreensis DSM
           16069 RepID=C7RA75_KANKD
          Length = 741

 Score = 68.7 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 62/175 (35%), Gaps = 17/175 (9%)

Query: 13  PEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLY 72
           P+   LI          L   A   L    +    VV++ +    VW   G  V  +++Y
Sbjct: 14  PDRNSLIFQEEEHNIEPL---AMDVLVYFTQNPQKVVSRSELIEAVW--SGRVVGDHSVY 68

Query: 73  QNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI----------QNHVINSSTDAHT 122
           + I+ +R+      D +   I T+ ++G+++  D+++             V ++  +  +
Sbjct: 69  RIINKLRQILAR--DPSREYIKTIRKKGYQLVCDVSVSVSGLLKESFTEEVNDNEHERLS 126

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177
            +   +   +        G           I   LI+L   V+G  +    +  +
Sbjct: 127 ESGLLSSDKSQHGVMVSKGKLTKRGLWRSSIFWGLILLIVSVVGFLTVKLYFYYS 181


>UniRef50_C9PL80 Putative uncharacterized protein n=1 Tax=Vibrio furnissii CIP
           102972 RepID=C9PL80_VIBFU
          Length = 214

 Score = 68.7 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 7/147 (4%)

Query: 13  PEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLY 72
           PE   + S        +++      L  LLE     V ++     +W   G+ V  N+L 
Sbjct: 2   PEQFSIFSTD--GERYLISYNECVALCTLLEYQNTFVMRKTLLHAIWGNRGLLVDENSLN 59

Query: 73  QNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVN 132
           Q IS +R+            I T+P+ G+KI     +       +T+      PP  K +
Sbjct: 60  QCISRLRKQINHSCLKQVVQIETLPKIGYKI-----VTETKRKHATNRPKKPRPPITKPH 114

Query: 133 AGYKESIGGAKNFNNKILKHIKSHLIM 159
             Y++ +      +   +    ++L +
Sbjct: 115 HEYRKKLLLVSALSFSSMIGAVAYLTI 141


>UniRef50_B1KKU4 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC
           51908 RepID=B1KKU4_SHEWM
          Length = 711

 Score = 68.7 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 10/153 (6%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           +     +  L   A   L+ L +    VV+Q +  + VW      V  NTL + I+ +R+
Sbjct: 19  LTQKQQSQTLPPKALAVLTCLAKNKASVVSQDELLSHVWPNS--VVAPNTLQRCIAQLRK 76

Query: 81  GFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIG 140
                G      I T  ++G+ +  D++ Q            +    +  +       + 
Sbjct: 77  ALGDDGKVQR-YIKTHAKQGYSLEVDVHWQ-------QPEPNNANKDSSPLPTTLAVQVE 128

Query: 141 GAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL 173
            + +  +K +  + S +I L   V G     + 
Sbjct: 129 DSPHQPSKTVSRLISAVIALLIIVFGVIGYQFF 161


>UniRef50_C9NXT9 Cholera toxin transcriptional activator n=2 Tax=Vibrio
           RepID=C9NXT9_9VIBR
          Length = 229

 Score = 68.7 bits (166), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 76/219 (34%), Gaps = 8/219 (3%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           +IN++     E   + S  +   +  +       L+ ++E   + + + +    VW + G
Sbjct: 3   LINESHILDVEQGYIHSQGSNVRH-PIGINEIALLNYMIERTGETLTKHELMHEVWLKRG 61

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN-IQNHVINSSTDAHT 122
           + V +++L   IS  RR      D    +I TV   G++    ++  Q        +A  
Sbjct: 62  IVVESSSLLHCISNCRRALE---DRAGEIIRTVRGTGYEFVGRVDAYQPANEVEQVEAVV 118

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
                        +        + ++++      +  ++++ I   S+  L   +  +  
Sbjct: 119 PEVVEIPVPQEPKETLRSRLVKYRSQLVATGLFVIGAVASYSIIENSSSPLAYASFEQQE 178

Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221
           F       E NG   +    T   L +F +    +   G
Sbjct: 179 FASCWFTPENNGAKVHYQNST---LYDFGELTLLVDGQG 214


>UniRef50_A5L317 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium
           SWAT-3 RepID=A5L317_9GAMM
          Length = 295

 Score = 68.3 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 89/250 (35%), Gaps = 15/250 (6%)

Query: 5   INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64
           I D++    E R L   H AD+ V +     + L  LL+     V++++ F   W  +G+
Sbjct: 7   ITDSVTIDIEIRTLTH-HPADITVSMRPLPFKVLLYLLKHQDRCVSREELFEECW--QGV 63

Query: 65  RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS-------S 117
            V   +L   IS IR+ F+ +      L  T+ ++G+ +      Q   +          
Sbjct: 64  LVTDQSLTNTISYIRKVFKNLDTNELEL-KTISKQGYLLVISPKQQTLKVEEIKPFAEAE 122

Query: 118 TDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177
                 +A   I       +      N   K     +  L + + ++     AY+  + N
Sbjct: 123 VQLELSDAGTGIDEEKIKPDLQQPVSNQKTKSKFPRQFTLNLCALWLGIILVAYYSIHYN 182

Query: 178 QPKPFF--KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLA 235
           + +  F  KD             V + +    +   +  + I +  ++      +Y  + 
Sbjct: 183 KEQAPFLDKDNYQSYPFGSATLYVHDQSNTITEP--EMTSYINNLELSQCNVKSIYIRIT 240

Query: 236 KSSPGMIVMA 245
            S+    +++
Sbjct: 241 NSAFRDNIIS 250


>UniRef50_C9B1W4 DNA binding response regulator n=4 Tax=Enterococcus
           RepID=C9B1W4_ENTCA
          Length = 230

 Score = 68.3 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 6/104 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
             + F+P    L         + L+   +R LSLLL+    +VA++     +W  E   +
Sbjct: 133 GQVTFYPTENVL---KKQGEQLPLSPNEARILSLLLQHRGKIVAKETIIEMLWNSEEF-I 188

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ 110
             NTL  N++ +R+    +      LI TV  +G+ I  +    
Sbjct: 189 DNNTLAVNMTRLRKKLSQI--ELSDLIQTVKNKGYLIEKEHAYD 230


>UniRef50_B1KAJ7 Transcriptional regulator, winged helix family n=3 Tax=Burkholderia
           cenocepacia RepID=B1KAJ7_BURCC
          Length = 493

 Score = 68.3 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 20  SVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIR 79
           S+      + + + A   L++LL A   +V + +    VW   G  V  N L  +IS +R
Sbjct: 14  SLRRDGKAIHVGSRAFDVLAVLLSAAGRLVTKDELMAAVWP--GTVVEENNLQVHISALR 71

Query: 80  RGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPP 127
           +           LI TVP RG+++        ++  ++      +  P
Sbjct: 72  KLLG----PQRDLIVTVPGRGYQLTQKSAPSANLTPATPLRQGDSDIP 115


>UniRef50_A3QBG0 Transcriptional regulator, CadC n=1 Tax=Shewanella loihica PV-4
           RepID=A3QBG0_SHELP
          Length = 696

 Score = 68.3 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 48/97 (49%), Gaps = 4/97 (4%)

Query: 13  PEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVW-EEEGMRVPTNTL 71
               KL+S+ +AD ++ L++     L L +++  +VV++Q     +W   EG  V     
Sbjct: 12  ELDCKLMSLKHADSSIKLSSKVFELLMLFIDSPDNVVSRQQAIDTIWLGNEG--VGKKGF 69

Query: 72  YQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108
              I ++R+ F+ +G     +  T+P+ G+++   + 
Sbjct: 70  TNGIWVLRKTFKDLG-VEEEVFNTLPKLGYQLTLTVQ 105


>UniRef50_A6ENM5 Two-component system response regulator n=1 Tax=unidentified
           eubacterium SCB49 RepID=A6ENM5_9BACT
          Length = 289

 Score = 68.3 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 45/98 (45%), Gaps = 7/98 (7%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +  F+P+  KL+    A   + L+      L++L+     +V ++    +VWE+ G+ V
Sbjct: 196 GSFYFYPDQNKLV---KAATEINLSKKECELLTILVTNANQIVTREILEKQVWEDHGVVV 252

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104
             + L   IS +R+  ++  D     I  +   G+K+ 
Sbjct: 253 GRS-LDTYISKLRKKLKSDDDLK---ITNIHGVGYKLE 286


>UniRef50_A6UHF5 Transcriptional regulator domain protein n=13 Tax=Proteobacteria
           RepID=A6UHF5_SINMW
          Length = 531

 Score = 68.3 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/156 (20%), Positives = 58/156 (37%), Gaps = 16/156 (10%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++  D +    E R+L         V +       L  L+     VV++ +    VW 
Sbjct: 1   MQFMFADYVL-DRERRELTLR---GQVVSVGPQVFDLLLHLVGTRDRVVSKDELLQAVWG 56

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS--- 117
             G  V  +T+  +I+ +R+     G     L+ TV R+GF+   DI I +         
Sbjct: 57  --GRIVSESTITSHINAVRKAIGDTGG-EQRLVRTVARKGFRFVGDIRIADSAEARQPGG 113

Query: 118 ------TDAHTHNAPPAIKVNAGYKESIGGAKNFNN 147
                 T   +   PPA+ +      ++   +N + 
Sbjct: 114 PGSAGHTSLGSKEPPPALALPDKPSITVLPFQNLSG 149


>UniRef50_C9Y6H6 Putative uncharacterized protein n=1 Tax=Curvibacter putative
           symbiont of Hydra magnipapillata RepID=C9Y6H6_9BURK
          Length = 526

 Score = 67.9 bits (164), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 16/163 (9%)

Query: 25  DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84
              V++   A   L +L++   ++V ++  F  VW   G+ V  N L  ++S +RR   A
Sbjct: 33  GQTVMVGARAFDVLCVLVDHAGELVTKKKLFDLVWP--GLVVEENNLQVHVSSLRRILGA 90

Query: 85  VGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGG--- 141
                   IATVP RG++    +      + ++  +         +        +     
Sbjct: 91  ------DAIATVPGRGYRFTLRLAAVPSAVETAQASKGKGRASDQQAYRRTIAVLPFVNL 144

Query: 142 -----AKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179
                 + F++ + + I SHL      ++ + ++ + + N + 
Sbjct: 145 NADPEQEYFSDGLAEDIISHLTKSPWLLVVSRNSSFAYRNTKE 187


>UniRef50_D1TLX7 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia
           sp. CCGE1002 RepID=D1TLX7_9BURK
          Length = 476

 Score = 67.9 bits (164), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 6/99 (6%)

Query: 20  SVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIR 79
            V     ++ L + A   L+ L  A   VV++ +    VW   G  V    +  NIS +R
Sbjct: 14  CVRRDGQDLRLGSRAFDLLATLASANGRVVSRSELMQTVWP--GTVVEDCNIDVNISALR 71

Query: 80  RGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118
           +           LI TV RRG+++    +IQ  +  +++
Sbjct: 72  KALGD----DRDLIVTVARRGYQLAPSRHIQPKLRTAAS 106


>UniRef50_B6EKJ8 Putative transcriptional regulator n=1 Tax=Aliivibrio salmonicida
           LFI1238 RepID=B6EKJ8_ALISL
          Length = 542

 Score = 67.9 bits (164), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + IND      E++    ++  D  V +       L  L +   +V  + +    VW+  
Sbjct: 6   FQINDWTLVIEENK----LYRQDREVSVEPRLVNLLRFLAQHSGEVFCRDELIQHVWD-- 59

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS 116
           G  V    + Q+I  +R+  R         + TVP+RG+K+  D  + N     
Sbjct: 60  GAFVTDQVVTQSIFELRKILRDGRLDNARYLVTVPKRGYKLVADTQLVNFEETE 113


>UniRef50_Q2BXY4 Putative uncharacterized protein n=2 Tax=Photobacterium
           RepID=Q2BXY4_9GAMM
          Length = 264

 Score = 67.9 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 34/193 (17%), Positives = 65/193 (33%), Gaps = 24/193 (12%)

Query: 12  WPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTL 71
               R +  + +    + ++   +   +LL     + V ++      W  +G  V  N+L
Sbjct: 18  DYSRRTITRISDN-AVLKVSRSETHIFALLANTANNTVHREILLKECW--QGKIVTNNSL 74

Query: 72  YQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN--------------DIN--IQNHVIN 115
              I  +R  F  +G+  H++I T P+ G+ I                DI+  I+ H I 
Sbjct: 75  TVAIKNLRTSFSKIGE--HNIITTEPKLGYSIRETSLADDGSHPPLLVDISKHIEAHEIA 132

Query: 116 SSTDAHTHNAPPAIKVNAGYKE---SIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYW 172
              +   H      K     K+    +    N  +     I S   + + FV   Y  + 
Sbjct: 133 EKLELQEHQESVIEKQEITGKKKKYILLNKSNTASLFDFLIVSFFFLATLFVCYQYLFFV 192

Query: 173 LWNNNQPKPFFKD 185
              +    P   +
Sbjct: 193 NTTDVDGIPVNYN 205


>UniRef50_D2T5X7 Uncharacterized protein yqeI n=2 Tax=Erwinia pyrifoliae
           RepID=D2T5X7_ERWPY
          Length = 268

 Score = 67.9 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/269 (20%), Positives = 98/269 (36%), Gaps = 18/269 (6%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
            I D +      R L   H+   +V+L T A RCL+ L +A   V++Q+      W   G
Sbjct: 6   TIGDLVRLDRRTRSLSRTHDG-KSVMLPTAACRCLAALAQAKEQVLSQEQLMDIGWRHAG 64

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
           + V  N++   I+ IRR    +       +  V R G+++     I       +TD    
Sbjct: 65  VEVTDNSVRVMITKIRRALVTLKVDERIQLIAVTRSGYRL-----IVRADRPGATDLSAA 119

Query: 124 NA-PPAIKVNAGYKESIGGAKNFNNKILKHIK---SHLIMLSAFVIGAYSAYWLWNNNQP 179
                A ++               +++ + I    + L++ S     A + + L  +  P
Sbjct: 120 KRGVQAARILPAAGGDALPVIAPRSRLQRRIAAGGAGLVLGSC--AVAVTGWLLTIDPVP 177

Query: 180 KPFFKDYKTVAEING---CHFNVTEDTIDGLKEFDKYKTRILDSG--INCKKHPWLYFPL 234
             + + Y   A              +    ++    Y    L+    IN +   +LY   
Sbjct: 178 VHYIRWYDGKAPPQSEVWVPEKAQPEKQQVIQTLQLYTQFALNKEGDINAEHARYLYITT 237

Query: 235 AKSSPGMIVMACNKNYNQHEVANCLTLSY 263
            KSSP + ++AC          NC + S+
Sbjct: 238 GKSSPHLGLIACVTPLR-DSENNCESYSF 265


>UniRef50_Q142F7 Lysine decarboxylase transcriptional regulator, CadC n=1
           Tax=Burkholderia xenovorans LB400 RepID=Q142F7_BURXL
          Length = 436

 Score = 67.9 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 57/156 (36%), Gaps = 15/156 (9%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRC-------LSLLLEAFPDVVAQQDFFT 56
           ++N   EF  ++  ++        V +   A R        L L++E+   V  ++    
Sbjct: 36  VLNTQEEFVSKNSCIVRFDWRHDRVSVGHIAVRVSGQEKDVLRLMVESAGRVCDREALMG 95

Query: 57  RVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS 116
            VW E  + +    L Q +  +R+  R +G   H  I T+PR G++   +       +  
Sbjct: 96  VVWGERAIHMDELYLTQLVYRLRKSLRPLGLGDH--IVTMPRTGYRFEPE------GLQI 147

Query: 117 STDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKH 152
            TD    +  PA    A  +E         N   + 
Sbjct: 148 DTDEPAPDETPAPVGAAVAEEPAPRRATLRNWFARL 183



 Score = 52.9 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           V +A   V LT   S  L   +E     + + +  +R+W +E   V  N L + +S +RR
Sbjct: 209 VTHAGATVHLTGFESALLQAFVEQPDVTLERDELISRIWGDE-QDVDVNRLTRLVSRLRR 267

Query: 81  GFRAVGDTTHSLIATVPRRGFKI 103
             + +G      +  +P  G++ 
Sbjct: 268 SLQPLGLERQ--LVYIPCVGYRF 288


>UniRef50_Q6GZK0 Cad operon transcriptional activator (Fragment) n=9
           Tax=Enterobacteriaceae RepID=Q6GZK0_ECOLX
          Length = 97

 Score = 67.5 bits (163), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 17  KLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNIS 76
            +  +      + L       L    +   +V+++ +    VW+     V  + + Q+IS
Sbjct: 16  SINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS--IVTNHVVTQSIS 73

Query: 77  IIRRGFRAVGDTTHSLIATVPRRG 100
            +R+  +   + +   IATVP+RG
Sbjct: 74  ELRKSLKDNDEDSPVYIATVPKRG 97


>UniRef50_A3W8K2 Putative uncharacterized protein n=1 Tax=Roseovarius sp. 217
           RepID=A3W8K2_9RHOB
          Length = 393

 Score = 67.5 bits (163), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 5/80 (6%)

Query: 30  LTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDTT 89
           L   + R L +LL+    +V++ D    VW    + V  ++L Q +S +RR     G   
Sbjct: 11  LRPKSYRLLEVLLDRRGKLVSKDDLVREVWPN--VFVSDDSLAQCVSDVRRAL---GAEG 65

Query: 90  HSLIATVPRRGFKIHNDINI 109
             L+ TVPRRG+ + ++  I
Sbjct: 66  AGLLRTVPRRGYVLLDEDAI 85


>UniRef50_A1SYN7 Cholera toxin transcriptional activator-like protein n=2
           Tax=Psychromonas RepID=A1SYN7_PSYIN
          Length = 282

 Score = 67.5 bits (163), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
                      LI  +     V L    +  L  L +    VV ++D    VW   G  V
Sbjct: 13  GEFLIDTSQNSLIHTN---RKVYLGPLRTSLLHFLCKNVNKVVTREDLAQHVW---GRLV 66

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
             +T+ Q+IS +R+    +     + I+T+P+RG+    D
Sbjct: 67  TDHTINQHISQLRKSIGTLVLHGLN-ISTIPKRGYIARMD 105


>UniRef50_A5ED47 Transcriptional regulator n=1 Tax=Bradyrhizobium sp. BTAi1
           RepID=A5ED47_BRASB
          Length = 972

 Score = 67.1 bits (162), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 43/103 (41%), Gaps = 10/103 (9%)

Query: 5   INDNIEFWPEHRKL----ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           +   + F     ++      +      V L   A   + +L+++   +V + +  ++VW 
Sbjct: 25  LGGKVVFATGEWEIDLDRRELRARGGPVPLGGRAFEIMEVLIKSEGKLVTKDELLSQVWP 84

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103
             G  V  NTL  +IS +R+           ++ T+  RG+++
Sbjct: 85  --GATVEENTLQVHISALRKAL----GPDREMLKTISGRGYRL 121


>UniRef50_Q182M4 Two-component response regulator n=14 Tax=Clostridiales
           RepID=Q182M4_CLOD6
          Length = 242

 Score = 66.7 bits (161), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 2   YWII---NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRV 58
            +I+   +D   ++ E++ +I   + +  ++L+   ++ L  L+E     + ++     +
Sbjct: 131 NYILLVCDDLFFYYIENKLIIRTDDKEEEIILSKTETKLLKYLMENSMQTLTKEQLLESL 190

Query: 59  WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFK 102
           W+  G  V  NT+  NI  +R+       +    I TV   G+ 
Sbjct: 191 WDSSGNFVDDNTIAVNIRRLRQKVEK-NPSEPKYIKTVRGVGYM 233


>UniRef50_A7B4Z9 Putative uncharacterized protein n=2 Tax=Ruminococcus
           RepID=A7B4Z9_RUMGN
          Length = 236

 Score = 66.7 bits (161), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            N+  +P+ RK+     + + + LT      L LL++    V +++  + +VW + G   
Sbjct: 144 KNLSLYPQSRKVEV---SGIELPLTMHEYDILYLLIQNPQKVYSREHLYEQVW-KGGYYG 199

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104
             NT+  ++S +R+  +   D   S I TV   GFK+ 
Sbjct: 200 EDNTVNVHVSNLRKKIQKA-DKEESYIKTVWGIGFKLE 236


>UniRef50_Q2T8V0 Transcriptional regulator, putative n=9 Tax=pseudomallei group
           RepID=Q2T8V0_BURTA
          Length = 255

 Score = 66.7 bits (161), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/168 (16%), Positives = 62/168 (36%), Gaps = 9/168 (5%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            ++I D + F      L+++ + D    LTT  S  L ++L+    +  +     +VW  
Sbjct: 3   KYLIEDLVTFD---AHLMTLTHLDQTTELTTNESELLQMVLDG---MATKAAVIQQVWGS 56

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
           +G+ V  ++ +Q +  +R      G  + +LI T+PR+G K              + +  
Sbjct: 57  KGLVVTDSSYHQLVRSVRSRLEEHG-ISGALIKTLPRQGLKFLGSAQALTDAPVPAAERG 115

Query: 122 THNAPPAIKVN--AGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGA 167
             +   A          +    +     +     ++   +  A + G 
Sbjct: 116 LADLDEAADEASRGPLAQHEPPSAPPAGRARNWRRTLRFVERALLAGL 163


>UniRef50_Q39G50 Transcriptional regulator, winged helix family n=11
           Tax=Burkholderia RepID=Q39G50_BURS3
          Length = 877

 Score = 66.7 bits (161), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 52/140 (37%), Gaps = 10/140 (7%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           +      + +   A   L LL+EA  +VV++ +   RVW      V  N L   I+ +R+
Sbjct: 16  IRLNGEPLRIGNRAFDVLELLIEAEGEVVSKDEIMRRVWA--HTVVEENNLQVQIATLRK 73

Query: 81  GFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIG 140
              A        I T   RG+++       +    +S  A T   P   ++       +G
Sbjct: 74  ALGA----DRGRIVTAAGRGYRLVA----VHDEDETSALAQTSRCPAEPRILFDPSMLVG 125

Query: 141 GAKNFNNKILKHIKSHLIML 160
                   + +  +S ++ L
Sbjct: 126 RQCMIEEILAELERSRVVTL 145


>UniRef50_Q987X1 Transcriptional regulator n=1 Tax=Mesorhizobium loti
           RepID=Q987X1_RHILO
          Length = 903

 Score = 66.7 bits (161), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 6/122 (4%)

Query: 6   NDNIEFWPEH--RKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
                F P    R+   ++     + L + A   L +L+    +VV  ++    VW +  
Sbjct: 3   GQIFRFGPFEMHREQRRLYRDGKLLQLGSRAFDILQILVMRAGEVVRHEELIAMVWPD-- 60

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
             V  N L  N++ +RR     G  T+ LIA VP RG+     +  Q   +  + D H +
Sbjct: 61  TFVAENNLRVNMTALRRALGPEGSLTNGLIANVPGRGYSFTAPVAHQT--VEHAPDRHDN 118

Query: 124 NA 125
           + 
Sbjct: 119 SE 120


>UniRef50_A6CVT0 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
           RepID=A6CVT0_9VIBR
          Length = 267

 Score = 66.7 bits (161), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 64/214 (29%), Gaps = 14/214 (6%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +    ++    ++R L     +D  V L+      L  L+      + +    T  W 
Sbjct: 1   MNYHRRHDLVINLDNRMLTKTS-SDKVVTLSPSECLILKHLMNNGSQTLGRDYLLTHCWP 59

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH--NDINIQNHVINSST 118
             G  V  ++L   +  IR     V   +   + TV + G+ +      ++Q    + S 
Sbjct: 60  --GRVVTNSSLNVAVKNIRNALLEV--ESRCKVITVQKEGYCLVVPEQSDVQVVGFDGSR 115

Query: 119 DAHTHNAPPAIKVNAGYKESI-GGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177
                + P    VN   + S    +K  +   L         L A +  +     L    
Sbjct: 116 STVNADQPKLDAVNPPIETSDTSPSKYHSLAKLSQFSYQFAPLGAGIAVSILVIVLLF-- 173

Query: 178 QPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFD 211
                   +     ING         +D     D
Sbjct: 174 ----RIGFFMERTAINGIDVYHDNAALDSQVMAD 203


>UniRef50_B2T985 Transcriptional regulator, winged helix family n=2 Tax=Burkholderia
           RepID=B2T985_BURPP
          Length = 504

 Score = 66.7 bits (161), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 6/106 (5%)

Query: 13  PEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLY 72
           P  R+L     +   V L + A   L  L++    VV ++   +R W    + V  + L 
Sbjct: 34  PTERRL---ERSGSVVQLGSRALDILIALIQHAGQVVDRRKLMSRAW--RNIVVDESNLR 88

Query: 73  QNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118
            NI+ +R+     G+     +  VP  G+     +  +     SS+
Sbjct: 89  VNIAGLRKALGD-GEDGVRYVKNVPGIGYCFVGQLTRERIATESSS 133


>UniRef50_A4CDM5 Putative transcriptional regulator n=1 Tax=Pseudoalteromonas
           tunicata D2 RepID=A4CDM5_9GAMM
          Length = 722

 Score = 66.4 bits (160), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 31/201 (15%), Positives = 68/201 (33%), Gaps = 31/201 (15%)

Query: 10  EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69
            F    ++L  +        L    + CL+ LL+A    V   +    VW    +    N
Sbjct: 10  IFDENKQELKYLD--GTTKRLPARLNNCLASLLKAQGQTVIYDELLEAVWGT--IYRDYN 65

Query: 70  TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI------QNHVINSSTDAHTH 123
           T+   +S +R+       +  + I TVP++G++     +I      +N+ +  + D+H  
Sbjct: 66  TIASVVSELRK-LINCRSSKVNYIVTVPKKGYRFSCYEHIQLVDSQENNALEQNIDSHNT 124

Query: 124 --------------------NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAF 163
                                +P  IK  +     +  + +F  +      S  +++   
Sbjct: 125 ELKDVATEIEPQLAPQNAIIESPQVIKSPSSINTVVNSSSSFTGRKKALTYSFALVILLI 184

Query: 164 VIGAYSAYWLWNNNQPKPFFK 184
           V  A      ++++       
Sbjct: 185 VCAAVLLRPYFSSDNLNIHSS 205


>UniRef50_Q67JF4 Two-component response regulator n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67JF4_SYMTH
          Length = 236

 Score = 66.4 bits (160), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 3/82 (3%)

Query: 24  ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83
            D  V L+    R L  L     ++V ++     +W++    V  NTL  N++ +RR   
Sbjct: 154 GDRTVELSPKEFRLLWCLARRAGEIVGRETLLEELWDDTEF-VDDNTLTVNVTRVRRRLE 212

Query: 84  AVGDTTHSLIATVPRRGFKIHN 105
            +G T   +I T   +G++++ 
Sbjct: 213 ELGLTG--VIETKRGQGYRLNA 232


>UniRef50_B8CQV8 Transcriptional regulatory protein n=1 Tax=Shewanella piezotolerans
           WP3 RepID=B8CQV8_SHEPW
          Length = 452

 Score = 66.4 bits (160), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/164 (17%), Positives = 62/164 (37%), Gaps = 10/164 (6%)

Query: 5   INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64
           I + +    + R L+ +   + +  L+      L  L+    DVV+++   T  W   G 
Sbjct: 3   ITEFLIIDLDARDLVDLRTTERH-ALSLAELEVLKCLVSHVGDVVSKEQLNTAGWP--GR 59

Query: 65  RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHN 124
            V  ++L Q +S +R+   A  D     +  +PR G+ +     I +    ++ +     
Sbjct: 60  VVAPSSLTQCMSSLRKKLVAQTDIE---LKNIPRYGYSL----CIVDEHDIATDETKAET 112

Query: 125 APPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY 168
              A++           +K  N  +   I    +++ A +I   
Sbjct: 113 VSTAVQPQTEEGHVAFKSKRLNINLASRIVWSTLVVLAGIIITL 156


>UniRef50_B6FSP5 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM
           1787 RepID=B6FSP5_9CLOT
          Length = 226

 Score = 66.4 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           V+  +  + LT    + L+L  E    ++ +    + +W+E G  V  NTL   I  +R 
Sbjct: 143 VYKNNERIELTALEYKILALFFENKGRILTRGQILSGIWDESGNFVNNNTLTVYIKRLRE 202

Query: 81  GFRAVGDTTHSLIATVPRRGFK 102
                      +I TV   G+K
Sbjct: 203 KIEE-DPNAPKIIKTVRGMGYK 223


>UniRef50_C6LC42 DNA-binding response regulator RegX3 n=3 Tax=Clostridiales
           RepID=C6LC42_9FIRM
          Length = 224

 Score = 66.4 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 5/83 (6%)

Query: 25  DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84
              + L++   + L LL+E     V ++    +VW+  G  V  NTL   +  +R     
Sbjct: 147 QEEIRLSSLEYQILLLLMENKGKTVTRKQLLEQVWDSGGNFVNDNTLTVAMKRLREKLHN 206

Query: 85  VGDTTHSLIATVPRRGFKIHNDI 107
                 S + T+   G+++   I
Sbjct: 207 -----PSCLKTIRSFGYRMEESI 224


>UniRef50_B1KWY3 DNA-binding response regulator n=33 Tax=Firmicutes
           RepID=B1KWY3_CLOBM
          Length = 237

 Score = 66.4 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 4/102 (3%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           II+ +I       K+      +  ++LT    + L +L+E   +V+++     ++W+ +G
Sbjct: 140 IISKDITIELLKAKVF---KGEEEILLTAGEYKLLLILVENKGNVLSRNILLEKIWDVDG 196

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
             V  NTL   I  +R             I TV   G++   
Sbjct: 197 SFVDGNTLNVYIKRLREKIEK-DPKKPEYIETVRGIGYRWSE 237


>UniRef50_Q3KEV5 Putative transcriptional regulator n=2 Tax=Pseudomonas fluorescens
           RepID=Q3KEV5_PSEPF
          Length = 928

 Score = 66.4 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 9/118 (7%)

Query: 6   NDNIEFWPEH----RKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
           N  I F P      ++L  V   D  + L   A   L +LL    +VV++Q     VW +
Sbjct: 6   NQAIGFGPYRIHPGQRL--VLEGDQPLRLGRRAMDILLILLAHAGEVVSKQQLIAGVWPD 63

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTD 119
               V    L  +++ +R+     G      I TV +RG+     + +Q+     +T 
Sbjct: 64  S--VVEDINLRVHMAALRKALGD-GQAGQRYIVTVAQRGYSFVAPVVLQSIEQRPTTA 118


>UniRef50_UPI0001B9ECAC two component transcriptional regulator, winged helix family n=1
           Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9ECAC
          Length = 317

 Score = 66.4 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 3/87 (3%)

Query: 20  SVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIR 79
           SV        L+   ++ L  L++    +V++     ++W+++   V  NTL   I+ +R
Sbjct: 229 SVSLGPTQAELSHTEAKILDELMKKPEQIVSRDRLLEKIWDDQ-AFVDDNTLNVYITRVR 287

Query: 80  RGFRAVGDTTHSLIATVPRRGFKIHND 106
           +   A+G      + TV  RG+++   
Sbjct: 288 KKLAALGI--EDGLQTVRGRGYRLVPS 312


>UniRef50_B8CQQ2 Transcriptional regulatory protein n=1 Tax=Shewanella piezotolerans
           WP3 RepID=B8CQQ2_SHEPW
          Length = 711

 Score = 66.4 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 60/177 (33%), Gaps = 23/177 (12%)

Query: 7   DNIEFWPEHRKL---ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
                 P    L    S+ +A+    L       L+ L   FPDVV++++    +W +  
Sbjct: 11  GRCIVDPSDHSLRFLSSLESAEACTTLQPKFIEVLAYLASRFPDVVSREEIIEHIW-DGN 69

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
             V +  L   I  +R+    + D    +I TV + G+++  +    +  +    D    
Sbjct: 70  AYVGSKALTNAIWHLRQQLSPISD--EPIIETVRKSGYRLLIEPQYSSADLVDDVDVLQQ 127

Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                                  +  +   +S + + +  VI   +  +   ++Q K
Sbjct: 128 LQ-----------------SRAESLTIALKRSWITVAAVSVISLITLAYHLYHDQIK 167


>UniRef50_C9XSJ2 Two-component response regulator n=15 Tax=Clostridiales
           RepID=C9XSJ2_CLODC
          Length = 228

 Score = 66.0 bits (159), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           V      V L+    R L + +     ++ +      +W+  G  V  NTL   I  +R 
Sbjct: 140 VKKNGNEVFLSALEYRLLLVFISNPKSIITRVRLLDELWDAAGEFVNDNTLTVYIKRLRE 199

Query: 81  GFRAVGDTTHSLIATVPRRGFKI 103
                  ++  +I TV   G+++
Sbjct: 200 KIED-DPSSPQIILTVRGTGYRL 221


>UniRef50_A4X1M5 Two component transcriptional regulator, winged helix family n=2
           Tax=Salinispora RepID=A4X1M5_SALTO
          Length = 251

 Score = 66.0 bits (159), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 2/90 (2%)

Query: 25  DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84
              V L     R L   +      V+++   + VW+       +NTL  +I  +R+   A
Sbjct: 161 GRPVSLPLKEFRLLYFFMTHADRTVSREQLLSAVWDGSTGE-SSNTLTVHIKRLRKRLEA 219

Query: 85  VGDTTHSLIATVPRRGFKIHNDINIQNHVI 114
            G+    LI TV   G++      ++    
Sbjct: 220 EGE-PQPLIITVRGLGYRFTPPEQMEPSST 248


>UniRef50_C8W7R9 Two component transcriptional regulator, winged helix family n=6
           Tax=Bacteria RepID=C8W7R9_ATOPD
          Length = 223

 Score = 66.0 bits (159), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 3/81 (3%)

Query: 24  ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83
              +V LT    R LSLL++    VV++Q     +W+ +   V  NTL  NIS +R    
Sbjct: 146 NQKSVELTKNELRILSLLMQNAGTVVSRQRIQEELWQSDEF-VDDNTLTVNISHLRNTLA 204

Query: 84  AVGDTTHSLIATVPRRGFKIH 104
           ++G      + T    G+ I 
Sbjct: 205 SIGV--EDFVMTRRGLGYVIE 223


>UniRef50_B5WFU1 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia
           sp. H160 RepID=B5WFU1_9BURK
          Length = 558

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 44/113 (38%), Gaps = 6/113 (5%)

Query: 13  PEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLY 72
           P  R+L     +   V L + A   L +L++    VV ++   +R W    + V  + L 
Sbjct: 88  PAQRRL---ERSGSFVQLGSRALDILIVLIQHAGQVVDRRMLMSRAW--RNIVVDESNLR 142

Query: 73  QNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125
            NI+ +R+     G+     +  VP  G+     +  +  V  S +     + 
Sbjct: 143 VNIAGLRKALGD-GEGRVRYVKNVPGIGYCFVGQLTRERIVAESGSQIAEPSP 194


>UniRef50_A5N5X6 Transcriptional regulator n=5 Tax=Clostridium RepID=A5N5X6_CLOK5
          Length = 225

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 5/98 (5%)

Query: 8   NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
           ++ F P   +L    N    V LT+  S+ L LL      V+ +     RVW  +     
Sbjct: 132 SLTFDPLRGELQYKENK---VKLTSKESQLLELLARNKNQVLTKDQILDRVWGPDSDVEM 188

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
            N +    S +R+  R +    + +I T+   G+ +  
Sbjct: 189 NNNIEVYFSYLRKKLRRLNC--NVIIETIRGIGYCLKE 224


>UniRef50_C5EI97 Response regulator receiver protein n=8 Tax=Bacteria
           RepID=C5EI97_9FIRM
          Length = 234

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            NI    + R+L         V L+   +  +  L+     V+ +    + +W  +   V
Sbjct: 137 SNITMDTDRRELA---GPSGTVSLSRREAALMEYLMRNAGQVLPRGLILSYIWGPDS-EV 192

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
               L   I  +RR  +AVG      I TV   G+++ +
Sbjct: 193 EDGNLDNYIYFLRRRLKAVGTAAQ--IKTVHGIGYRLED 229


>UniRef50_B1Y588 Transcriptional regulator domain protein n=1 Tax=Leptothrix
           cholodnii SP-6 RepID=B1Y588_LEPCP
          Length = 543

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 11/105 (10%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
              E  P+ R+++        V L   A   L  L+     VV + +   +VW   GM V
Sbjct: 8   GEFEVRPDERRVLLRGEP---VPLGARAFDVLMCLIAQRERVVTKNELLEQVWP--GMVV 62

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQN 111
             N L  ++S +R+ F A        +AT+P RG++    ++   
Sbjct: 63  EENNLTVHVSALRKVFGAQA------VATIPGRGYRFVMALDETT 101


>UniRef50_A6FDL9 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36
           RepID=A6FDL9_9GAMM
          Length = 399

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M + I++++ F      L S    D    L++     + LL      VV+++      W 
Sbjct: 1   MTYKISNDVIFCKIKANLKS---PDSTQKLSSSEKEIIDLLCSKNGAVVSKEALKVIGWP 57

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN 115
             G+ V   +L Q I  +R+     G     +IATV  +G+ + N   +    ++
Sbjct: 58  --GLEVTDQSLTQAIYSLRKKLALCG--ADDVIATVFNQGYTVKNAAVLSEDALS 108


>UniRef50_B2Q5H8 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2Q5H8_PROST
          Length = 142

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 51/111 (45%), Gaps = 7/111 (6%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           I+++++ + P  R L         + L+   S  L LLL       ++++    +WE+ G
Sbjct: 14  ILSEHVVYDPLKRTLSR---GKKTINLSENESCLLKLLLNKTS---SKREIMYEIWEKRG 67

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI 114
             V  ++ Y+ +  +R  F+ + +   +LI T+PR G       +  +H +
Sbjct: 68  TIVTESSYYKLVRQLRLSFKKM-ELDENLIMTLPRVGILYTGTKSEASHAL 117


>UniRef50_A0KMK1 Transcriptional regulatory protein, C terminal n=1 Tax=Aeromonas
           hydrophila subsp. hydrophila ATCC 7966
           RepID=A0KMK1_AERHH
          Length = 312

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 9/136 (6%)

Query: 7   DNIEFWPEHRKLISVHNADLN-VVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65
                  +   L   H+ +   V ++   +R L   L     + +++      W+  G  
Sbjct: 91  GRFVLDSKQLTLTRSHDGNPTSVRVSAAEARLLHFFLTHAGSLHSKETLLAIGWD--GRP 148

Query: 66  VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI----HNDINIQNHVINSSTDAH 121
           V  ++L   I+ +RR          ++I T+PR+G+ +         I      S ++  
Sbjct: 149 VSASSLPVAIANLRRYLDT--PEQEAVIRTLPRQGYLLMLSPAAMQAIPTASTPSLSEPA 206

Query: 122 THNAPPAIKVNAGYKE 137
              AP          E
Sbjct: 207 ADPAPLPEAGEPVATE 222


>UniRef50_A6TN88 Two component transcriptional regulator, winged helix family n=24
           Tax=Firmicutes RepID=A6TN88_ALKMQ
          Length = 224

 Score = 65.6 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 24  ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83
               + LT    + ++LL+    ++V +      +W++E   V  NTL  NI+ +RR   
Sbjct: 147 GKREIELTPNECKIVTLLIRNHGNIVTRTRLMKALWDDESF-VDDNTLTVNINRLRRKLE 205

Query: 84  AVGDTTHSLIATVPRRGFKI 103
            +G      + T+   G+++
Sbjct: 206 EIGL--EGYVKTIKGEGYRL 223


>UniRef50_Q5E341 DNA-binding transcriptional activator CadC n=9 Tax=Vibrionaceae
           RepID=Q5E341_VIBF1
          Length = 541

 Score = 65.2 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 57/164 (34%), Gaps = 17/164 (10%)

Query: 9   IEFWPEHRKLISVHNA----DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64
           I F      L+   N     D  V +       L  L +   +V  + +    VW+  G 
Sbjct: 4   ICFQINDWTLVIEENKLYRQDREVSVEPRLINLLRFLAQHSGEVFCRDELIKHVWD--GA 61

Query: 65  RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND---INIQNHV-------- 113
            V    + Q+I  +R+  R         + TVP+RG+K+  +   I +++          
Sbjct: 62  FVTDQVVTQSIFELRKVLRDGRLDNTRYLVTVPKRGYKLVAETKQIRLEDTPYWKPCDTF 121

Query: 114 INSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHL 157
            ++  D + ++           ++      +F    L    +++
Sbjct: 122 TSTEADENQNHNVELNTEEQEKEQDETAQLSFPAGPLTRAVTNI 165


>UniRef50_C0CI50 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica
           DSM 10507 RepID=C0CI50_9FIRM
          Length = 224

 Score = 65.2 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +  +    ++L      ++ V LT    R L   L+    V+ ++     VW+     V
Sbjct: 129 GDFVYDYAKKELTI---QNVPVKLTATELRLLEYFLKNRGQVLTREQILENVWDSYENFV 185

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFK 102
              TL  N+  +R             I T+   G+K
Sbjct: 186 DERTLNVNVRRLREKIEK-DPKNPRYIVTMFGIGYK 220


>UniRef50_C6XRJ0 Transcriptional regulator, CadC n=1 Tax=Hirschia baltica ATCC 49814
           RepID=C6XRJ0_HIRBI
          Length = 398

 Score = 65.2 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 50/129 (38%), Gaps = 5/129 (3%)

Query: 15  HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74
            R L ++     ++ L   A   LSLL+E    + ++++    +W    +     +L + 
Sbjct: 19  DRDLGTITFEGDDLKLRPKAYEFLSLLVEGRGRLFSKEELLETLWP--HVFATEESLARV 76

Query: 75  ISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAG 134
           +S  R      GD   ++I T+P+RG++I   +      +     +    A       A 
Sbjct: 77  VSTCRCAL---GDEEKTIIVTIPKRGYRIGLPVFTDKDDVAERQLSEVKYAQSGDISIAY 133

Query: 135 YKESIGGAK 143
               +G + 
Sbjct: 134 QTSGLGPSD 142


>UniRef50_A4C7M7 TolB domain protein n=1 Tax=Pseudoalteromonas tunicata D2
           RepID=A4C7M7_9GAMM
          Length = 689

 Score = 65.2 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 54/169 (31%), Gaps = 24/169 (14%)

Query: 12  WPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTL 71
            P    ++   N +    L       L  L    P++V ++     VW+  G  V    L
Sbjct: 15  NPLENTVV---NQEQTNSLQPKFIEVLVFLASQHPNIVTREQIINAVWDGNG-YVGEKAL 70

Query: 72  YQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKV 131
              I  +R+       T    I T+ + G+++    + Q                    +
Sbjct: 71  TNAIWHLRKTLVD-KPTQQEYIETIRKTGYRLLYQPHYQE-------------------L 110

Query: 132 NAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
            +   ES+   + +    +K + +   M    +IG +   +   +  P 
Sbjct: 111 ESQLAESLLIKQWYAKWPIKWLSAIAFMGVFILIGLFVGLFSRPSVAPT 159


>UniRef50_Q5LZ35 Response regulator (Homolog to RR01Spn & Sth) n=122 Tax=Bacteria
           RepID=Q5LZ35_STRT1
          Length = 226

 Score = 65.2 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 24  ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83
               V LT    + L +L +   ++V+++D    +W      +  NTL  N++ +R+   
Sbjct: 146 QGEVVSLTKNEFQILQVLFDHAGNIVSREDLMKELW-NSDFFIDDNTLSVNVARLRKKLE 204

Query: 84  AVGDTTHSLIATVPRRGFKIHND 106
           AVG      I T    G+ + +D
Sbjct: 205 AVGL--KDFIETKKGVGYGLRHD 225


>UniRef50_C9A7F3 DNA binding response regulator n=4 Tax=Enterococcus
           RepID=C9A7F3_ENTCA
          Length = 231

 Score = 65.2 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 6/98 (6%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
             + ++PE  K++    ++    LT      L+LL+ A P++V ++     +W++E   V
Sbjct: 134 GELIYYPEALKMVYREASEW---LTVREGELLTLLMSAHPEMVKRERILNLLWDDE-RFV 189

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104
             NTL  N+  +R+   A+G   +  I T+  +G+ + 
Sbjct: 190 DDNTLSVNVGRLRKKLAAMGI--NDPIQTIRGKGYALS 225


>UniRef50_B8KCT7 Transcriptional regulatory C terminal domain protein n=1 Tax=Vibrio
           parahaemolyticus 16 RepID=B8KCT7_VIBPA
          Length = 212

 Score = 65.2 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 59/151 (39%), Gaps = 15/151 (9%)

Query: 24  ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83
            D +  +T P S  L  LLEA  +VV +    +  W      +  N+L   I+ +R+   
Sbjct: 33  NDKSFSITIPESYVLKRLLEAKGEVVDKNTLISEGWG-RPDIIGPNSLPVAITNLRKIL- 90

Query: 84  AVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAK 143
              D +   I  VPR+G+++            S  +   + +   + V++ + E+    +
Sbjct: 91  ---DLSSVKIVNVPRKGYRLE---------FPSEGETLPNMSKTRVTVDSEWHENNIDHR 138

Query: 144 NFNNKILKHIKSHLIMLSAFVIGAYSAYWLW 174
             +N          ++ + +++      W+ 
Sbjct: 139 EVSNATF-LTALLCVVGAIYILMYMGFSWVT 168


>UniRef50_Q0ANH0 Lysine decarboxylase transcriptional regulator, CadC n=1
           Tax=Maricaulis maris MCS10 RepID=Q0ANH0_MARMM
          Length = 183

 Score = 65.2 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 24  ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83
                 L    +  L LL       V + +F   VWEE+G       L Q IS +RR   
Sbjct: 32  KGETHRLEPRLAGVLHLLARRGISPVTRDEFLETVWEEDG---SDEALNQAISRLRRLLG 88

Query: 84  AVGDTTHSLIATVPRRGFKIHNDIN-IQNHVINSSTDA 120
                  SLI T+PR G+ +   +   +     + T  
Sbjct: 89  DA-----SLIRTLPRIGYSLSAPVERAETLPNPAPTSP 121


>UniRef50_Q03AM3 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=7
           Tax=Lactobacillus RepID=Q03AM3_LACC3
          Length = 215

 Score = 64.8 bits (156), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           V   +  VVLT    R L+        ++A+      +W+     V  NTL   I  +R 
Sbjct: 132 VTKNETAVVLTAAEYRLLAYFFANPNQILARDQLLAALWDTREQFVADNTLTVTIKRLRE 191

Query: 81  GFRAVGDTTHSLIATVPRRGFKIH 104
                     +LI TV   G+ I 
Sbjct: 192 KLED-DPAHTTLIRTVRGMGYFID 214


>UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=16
           Tax=Firmicutes RepID=B7GFY6_ANOFW
          Length = 226

 Score = 64.8 bits (156), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 15  HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74
           +R   ++      ++LT    + L LLL+    V+ +     R+W      V   T+   
Sbjct: 140 NRTSHTLLKDGEQIILTPREFQLLDLLLQNRGRVLTRDIILDRIWG-YDADVSMKTIDAT 198

Query: 75  ISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104
           + ++R+    +GD    LI TV   G+ I 
Sbjct: 199 VKLLRK---KIGDEQQQLIKTVRGVGYTIE 225


>UniRef50_A4CDV0 Putative transcriptional regulator n=1 Tax=Pseudoalteromonas
           tunicata D2 RepID=A4CDV0_9GAMM
          Length = 676

 Score = 64.8 bits (156), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 4/123 (3%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +  F     +LI  H++     L    S+ L L +    +V++++     +W      V
Sbjct: 24  GDFIFDLGQDELIH-HHSRAITKLEPQVSQLLHLFVTHPAEVLSKEYLQDTLWPN--TIV 80

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126
             N+LYQ ++ IRR       +    I T+P++G+     +   N       D+  +N  
Sbjct: 81  EQNSLYQLLTKIRRLLNDSSRSPQ-YIKTLPKKGYCFIAPVTRYNPQAKPINDSVINNTN 139

Query: 127 PAI 129
            + 
Sbjct: 140 VSE 142


>UniRef50_C9QI56 Cholera toxin transcriptional activator n=2 Tax=Vibrio
           RepID=C9QI56_VIBOR
          Length = 232

 Score = 64.8 bits (156), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 52/156 (33%), Gaps = 6/156 (3%)

Query: 5   INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64
           IND          L    +      L +     L  + E     + +      +W ++G+
Sbjct: 22  INDKYILNVLTGILEERKSGVKT-ALGSNEVALLQFMTEHSRTPLEKARLLDEIWFKKGV 80

Query: 65  RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI--QNHVINSSTDAHT 122
            V  ++L  ++SI R+      D    +I T+   G++ + D++         S TD   
Sbjct: 81  VVEESSLLHSVSICRKAL---DDRNGEIITTIRGVGYQFNGDVSSYQSPSTQPSLTDTQD 137

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLI 158
                  K N  Y  +   +      +   I +  +
Sbjct: 138 VAPLTIKKANTRYLAAFSASALAAYFLYGAISTPWV 173


>UniRef50_Q9RFS1 Transmembrane regulatory protein ToxR (Fragment) n=1 Tax=Grimontia
           hollisae RepID=Q9RFS1_VIBHO
          Length = 193

 Score = 64.8 bits (156), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 54/165 (32%), Gaps = 17/165 (10%)

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQN-------HV 113
           E+G  V  ++L Q+IS +R+  +    +    + TVP+RG+++   + + N         
Sbjct: 1   EQGFEVDDSSLTQSISTLRKSLKDSTKSPM-FVKTVPKRGYQVVCSVEVYNEQEVELPEP 59

Query: 114 INSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILK----HIKSHLIMLSAFVIGAYS 169
             S  D       P +  +   +              K          + L ++V    +
Sbjct: 60  AASVIDETAAKKEPELLSDNTAQTLPLPDAVAEQTEPKVSTNATAPAKMPLGSWVALVLT 119

Query: 170 AYW---LWNNNQPKPFFKDYKTVAEINGCHFN--VTEDTIDGLKE 209
                     + P P  + ++ +  I        VT   I   + 
Sbjct: 120 LLVPLAFQIASNPNPKSEAFREILTIENVPVYIPVTNARISQWQP 164


>UniRef50_A2PNS6 Putative transcriptional regulator ToxR n=1 Tax=Vibrio cholerae
           MZO-3 RepID=A2PNS6_VIBCH
          Length = 253

 Score = 64.4 bits (155), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 27/194 (13%), Positives = 70/194 (36%), Gaps = 7/194 (3%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            + IND +      +++I+  +      ++      L  L++   ++V++++   + W  
Sbjct: 4   KYGINDFVL-DEARQRIINSTDGSYG-KISPHEFLVLLELIKKSGEIVSKEELLQKGWPN 61

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH--NDINIQNHVINSSTD 119
               V  N+L Q I  +R   +        +I T+ ++G+ I+  + + I +   +++  
Sbjct: 62  R--VVSENSLSQAIKNLRLLLKD-NSKEQRVIKTIAKKGYLINSMSVVQITDENYDNAIL 118

Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179
            +  +        +     +         + K IK    + S       S +    N   
Sbjct: 119 INKEHNKNRNIGMSILILLLITTIFNVFWVTKKIKDKFFLDSNIQYPTLSYHRQKINIYS 178

Query: 180 KPFFKDYKTVAEIN 193
           + +   Y     +N
Sbjct: 179 ENYNLSYALGERLN 192


>UniRef50_Q01QR8 Transcriptional regulator, CadC n=1 Tax=Candidatus Solibacter
           usitatus Ellin6076 RepID=Q01QR8_SOLUE
          Length = 276

 Score = 64.0 bits (154), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
              +F P  R+L         V L    ++ L LLL +  ++V +    T +W  + +  
Sbjct: 13  GAFDFDPLTRQLRREGTP---VRLQPQPAQVLGLLLASPGEIVTRDTLRTALWGTQTVVD 69

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103
               L   ++ IR       D+    I T+P+RG++ 
Sbjct: 70  FDRGLNFCVAQIRLALGDSSDSPR-YIKTLPKRGYQF 105


>UniRef50_C4Z6V6 Two-component system, OmpR family, response regulator n=1
           Tax=Eubacterium eligens ATCC 27750 RepID=C4Z6V6_EUBE2
          Length = 233

 Score = 64.0 bits (154), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 1/84 (1%)

Query: 19  ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78
            SV +AD  + ++      L +L+     +V +  FF ++W+  G  V  NTL   +S +
Sbjct: 147 KSVTHADKQICVSPTEFHVLEILINNKGLIVRRDTFFQKMWDRYGTFVEDNTLTVTVSRL 206

Query: 79  RRGFRAVGDTTHSLIATVPRRGFK 102
           +       +   + I T+   G++
Sbjct: 207 KTKLGNR-EDGRAYIETIRGIGYR 229


>UniRef50_Q1YYT7 Putative uncharacterized protein n=3 Tax=Photobacterium
           RepID=Q1YYT7_PHOPR
          Length = 431

 Score = 64.0 bits (154), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 8   NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
           +I + P    L S   AD    L       L+ L+E +   V + +     W +    V 
Sbjct: 12  DICYVPSLGILKS---ADSTQKLNLSEQYILAYLIENYGRPVTKNELLKAGWPDR--IVT 66

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPP 127
             +L+Q I  +R       +    +I T+PR G+++ + +  + ++  +   A++     
Sbjct: 67  EASLFQVIRALRVKLHE--EKKGDIIETLPRVGYQVRDFVREEVNLNTTVKLANSDKKKS 124

Query: 128 AI 129
            +
Sbjct: 125 PL 126


>UniRef50_B1T3M3 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia
           ambifaria MEX-5 RepID=B1T3M3_9BURK
          Length = 934

 Score = 64.0 bits (154), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 6/148 (4%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +   +P+ R+L      D    +   A   LSLL+    +VV+Q++F  +VW   G  V
Sbjct: 12  GSFRLYPDERRL---ERGDEIAEIGNRAFDILSLLVHRPGEVVSQKEFQEKVWP--GSVV 66

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126
               L   I+ +R+       ++H  I ++  RG+     +        ++ +A    + 
Sbjct: 67  GDVNLRVQITALRKLLSEDAASSHG-IRSITGRGYCFVGPVTYTTLNNTAAAEALGDASN 125

Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIK 154
               +           +  + K L  I 
Sbjct: 126 DISNLIGRRTAIEDICRLLSTKGLVSIV 153


>UniRef50_C5AMC0 Transcriptional regulator, winged helix family protein n=1
           Tax=Burkholderia glumae BGR1 RepID=C5AMC0_BURGB
          Length = 956

 Score = 64.0 bits (154), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 6/91 (6%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           +      V L   A   L +L  A   +V +      +W +    V  NTL  ++S +RR
Sbjct: 26  LRENGSAVRLGARAFAILEMLAAADGRLVTKDALLDAIWPD--TFVEENTLQVHLSALRR 83

Query: 81  GFRAVGDTTHSLIATVPRRGFKIHNDINIQN 111
                       I TVP RG+++      + 
Sbjct: 84  ALGD----QRDCIMTVPGRGYRLVRRAAAEP 110


>UniRef50_C6AVM9 Response regulator receiver protein n=1 Tax=Rhizobium leguminosarum
           bv. trifolii WSM1325 RepID=C6AVM9_RHILS
          Length = 277

 Score = 64.0 bits (154), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 13/161 (8%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
                 P  R+L+          +   A   L +LL +   +V++ +    VW    M V
Sbjct: 38  GRFCAIPHSRQLLLDGRPHE---IGGRAFDLLMVLLRSNGRIVSKDEILNEVWP--SMVV 92

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH--- 123
               L   +  +RR   + G    ++I T+ RRG+ +  D  + +  +   T   T    
Sbjct: 93  EECNLRFQVKSLRRALGSQG----NMIKTIVRRGYMLIRDDVVPDDEVRFDTTRLTTISG 148

Query: 124 -NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAF 163
            + P A+K  A Y   I   ++    I   ++S  + +++F
Sbjct: 149 IDTPAAVKAAAPYIALIEDDESVRRSISTLLRSVGLGVASF 189


>UniRef50_B2SNG2 Transcriptional regulatory protein, C terminal n=8 Tax=Xanthomonas
           RepID=B2SNG2_XANOP
          Length = 772

 Score = 64.0 bits (154), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/118 (14%), Positives = 44/118 (37%), Gaps = 2/118 (1%)

Query: 25  DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84
           +  + L   +   L  L      VV ++     VW +       + + Q ++ +R+ F +
Sbjct: 15  ERPLRLAPKSLAVLLALARQPGQVVTREQLLAEVWPD--TLPTNDVVTQAVTQLRKAFAS 72

Query: 85  VGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGA 142
            G      I T+ + G+++   +  + H   S+T         + ++      ++  +
Sbjct: 73  HGGQRSEHIETIAKTGYRLMAAVVWEAHAPGSTTLPQESPGVQSPELAQADDGAVPAS 130


>UniRef50_A6Q830 Two-component response regulator n=5 Tax=Epsilonproteobacteria
           RepID=A6Q830_SULNB
          Length = 223

 Score = 64.0 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 42/102 (41%), Gaps = 10/102 (9%)

Query: 5   INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64
           I++NI +  ++ +LI       +V L    SR L L ++   +V+A +  +  +W +   
Sbjct: 131 IDENISYDSKNGELII---DGESVSLGNKESRLLKLFVKKEGEVLAHERIYEHLW-DYDE 186

Query: 65  RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
                 L   I  +R+            I ++ ++G+K    
Sbjct: 187 EPSDTALRTYIKNLRK------IIGKDRIVSIKKQGYKFTAK 222


>UniRef50_A3WEA4 Adenylate cyclase n=1 Tax=Erythrobacter sp. NAP1 RepID=A3WEA4_9SPHN
          Length = 775

 Score = 63.7 bits (153), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 12/148 (8%)

Query: 17  KLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNIS 76
            L  +   D   +L     + L  L      ++++ D   R W+  G  V   ++ + IS
Sbjct: 37  SLRRITGPDGERMLEPKVMQVLIALSSPVGTILSRDDLIDRCWD--GRVVGDTSINRVIS 94

Query: 77  IIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYK 136
           I+R G R V     +++  VP+ G++I         V+  + D       P +       
Sbjct: 95  ILRTGLREVAG-DAAVVENVPKVGYRI---------VVREAPDDVLEKPAPDVIEQPTKP 144

Query: 137 ESIGGAKNFNNKILKHIKSHLIMLSAFV 164
           +     +   N+    I +  + + A V
Sbjct: 145 KVAATRRLQANRRATIIIAGALAVLALV 172


>UniRef50_A4C973 Putative transcriptional regulator n=1 Tax=Pseudoalteromonas
           tunicata D2 RepID=A4C973_9GAMM
          Length = 713

 Score = 63.7 bits (153), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/155 (16%), Positives = 57/155 (36%), Gaps = 6/155 (3%)

Query: 19  ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78
             + ++D+   L   + + LS  L     +  + +    VW +    V  N +Y+ IS +
Sbjct: 19  CLLTSSDIEKELDPLSYKLLSYFLACGNKITTRDELAEHVWGQR--YVDDNAIYRAISEL 76

Query: 79  RRGFRAVGDTTHSLIATVPRRGFKIHNDINI---QNHVINSSTDAHTHNAPPAIKVNAGY 135
           R+      D T   I T  ++G+     ++    +  +     D   +       V A  
Sbjct: 77  RKHLHHP-DYTQPFIKTHHKKGYSFTARVSAHHQEPLLNEVINDLPANIELLEQSVLANE 135

Query: 136 KESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSA 170
            E +   K+   + +    + L+ +     G +++
Sbjct: 136 PELVAVKKSSMQRYVVAGFAFLLCIGVLAWGIFAS 170


>UniRef50_A8H9X2 Transcriptional regulator, CadC n=2 Tax=Shewanella
           RepID=A8H9X2_SHEPA
          Length = 413

 Score = 63.7 bits (153), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 26  LNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAV 85
             + L+   +  L L+L+    ++ ++      W +    V  ++L Q IS++R+     
Sbjct: 25  SRIELSFAETAVLQLMLKHQGTLITREALLEAGWHDR--VVSASSLQQCISVLRKKLANY 82

Query: 86  GDTTHSLIATVPRRGFKI 103
            +     + T+PR G+ +
Sbjct: 83  PEVE---LKTIPRHGYVL 97


>UniRef50_A1TS46 Transcriptional regulator domain protein n=2 Tax=Acidovorax
           RepID=A1TS46_ACIAC
          Length = 531

 Score = 63.7 bits (153), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 25  DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84
              V L   A   L  L+     +V + + F +VW   GM V  N L  ++S +R+    
Sbjct: 44  GCPVALGARAFDVLCTLVHRAGTLVTKSELFRQVWP--GMVVEENNLQVHVSALRK---- 97

Query: 85  VGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125
                   I T+P +G++    +         +  A   +A
Sbjct: 98  --LVGADRIVTIPGQGYRFVGRVAGPPEPGQEAARAPLPDA 136


>UniRef50_C8WHB5 Two component transcriptional regulator, winged helix family n=5
           Tax=Bacteria RepID=C8WHB5_EGGLE
          Length = 223

 Score = 63.3 bits (152), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 19  ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78
             V  A  ++ LT    R L L  ++   +V ++     +W+  G  V  NTL   +  +
Sbjct: 138 ACVRKAGRDLALTALEYRLLLLFAQSRGKLVTREHVRNAIWDSAGEYVSDNTLSVYVKRL 197

Query: 79  RRGFRAVGDTTHSLIATVPRRGFK 102
           R            LI TV   G++
Sbjct: 198 RDKVED-DPAEPRLILTVRGLGYR 220


>UniRef50_C4U9W3 Transcriptional regulator n=1 Tax=Yersinia aldovae ATCC 35236
           RepID=C4U9W3_YERAL
          Length = 265

 Score = 63.3 bits (152), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           +IIN           +      +    L     + +S+LLE    +++++   T VW+  
Sbjct: 31  YIINHWSI-DLTSGFITHQVTQEQK-RLGEYQLKLISVLLEHAGQILSREQLTTLVWKRR 88

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
              +  N+L   I  +R       +    +I T+P+ G+ +         +I  S +A  
Sbjct: 89  --VIGNNSLPNAIHTLRMALDD-KNKQQRIIQTIPKMGYLLDTSF---CELIEKSAEAEL 142

Query: 123 HNAPPAIK 130
            +    + 
Sbjct: 143 ESPTEPMT 150


>UniRef50_B1LHR8 Lateral flagellar transmembrane regulator LafZ n=7
           Tax=Enterobacteriaceae RepID=B1LHR8_ECOSM
          Length = 297

 Score = 63.3 bits (152), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 33/178 (18%), Positives = 59/178 (33%), Gaps = 8/178 (4%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           II +N    P    LI     +    L       L  L +    V+++      VW+   
Sbjct: 20  IIINNWRMDPSLNALIHCETGETR-RLGEYHFILLETLAKNADVVLSRSYLCAEVWKNR- 77

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
             V  N+L   I  +R      G    ++I T+P++G+  + +       +  S+ A   
Sbjct: 78  -IVGGNSLPTAIHALRVAIDDDG-KQQNIIKTIPKKGYLCNKEYV----SLPESSPAEAL 131

Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
                I+  A  + S         K  K +    +  +   IG+   Y    +    P
Sbjct: 132 IITDQIQDTAPEEISSTTPPVPVRKKHKGLMGLALTAAVIFIGSTVGYSHLKSTPDAP 189


>UniRef50_A8UMD4 Two-component system response regulator n=2 Tax=Flavobacteriales
           RepID=A8UMD4_9FLAO
          Length = 298

 Score = 63.3 bits (152), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 9/99 (9%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +  F+PE  KL+        + L+      L+L +     ++ + +   RVWE+ G+ V
Sbjct: 206 GSFYFYPEQNKLV---KEAEEIALSKKECELLALFVANPNQIIKRDELTKRVWEDNGVFV 262

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIAT-VPRRGFKIH 104
             + L   IS +R+  RA      S+  T V   G+K+ 
Sbjct: 263 GRS-LDTYISKLRKKLRA----DSSIKLTNVHGVGYKLE 296


>UniRef50_C6IXU0 Transcriptional regulator domain-containing protein n=1
           Tax=Paenibacillus sp. oral taxon 786 str. D14
           RepID=C6IXU0_9BACL
          Length = 265

 Score = 63.3 bits (152), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 2/91 (2%)

Query: 15  HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74
            RK ++V+   + + LT      L  LLE    V+++++  + VW        +N +  +
Sbjct: 177 DRKKMTVYRGGIKIELTKTEFELLIKLLEHEGTVLSREELLSEVWGTT-FLGGSNVVDVH 235

Query: 75  ISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
           I  +R+       +  + I TV   G+++ +
Sbjct: 236 IKSLRKKLGD-NASRPTYITTVRGVGYRLAD 265


>UniRef50_C7R8I4 Transcriptional regulator, CadC n=1 Tax=Kangiella koreensis DSM
           16069 RepID=C7R8I4_KANKD
          Length = 217

 Score = 63.3 bits (152), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 44/98 (44%), Gaps = 5/98 (5%)

Query: 12  WPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTL 71
            P   +L      +    L     + L  L E   ++V +   F  VW   G+ +  + +
Sbjct: 17  DPALNQLSI---DEKIFELEPKVMQVLVCLNEHAGELVTKDTLFEEVW--HGVSISDDAI 71

Query: 72  YQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI 109
           Y +IS +R+ FR V +     + T+ R+G+ ++N+ + 
Sbjct: 72  YCSISKLRKTFRQVAEHRSPELKTIARQGYMLYNNPSY 109


>UniRef50_UPI00016A77BF transcriptional regulator, putative n=1 Tax=Burkholderia
           oklahomensis EO147 RepID=UPI00016A77BF
          Length = 170

 Score = 63.3 bits (152), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 18/168 (10%)

Query: 19  ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78
           +S++  D    LT   +  LS+L++     V +Q    +VW  +G+ V   + +Q I  +
Sbjct: 1   MSIYRKDNITRLTPNETELLSILMKG---TVRKQAVIEQVWGSKGLVVADGSYHQLIRTL 57

Query: 79  RRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHV--------INSSTDAHTHNAPPAIK 130
           R       D   + I T+PR G K    I                + TD   +       
Sbjct: 58  RVKLAEQ-DLASNTIKTLPRLGLKFVGTIEFLADFPAVDAVQYPTAQTDLPPNRNITDSS 116

Query: 131 VNAGYKESIGGAKNFNNKILK------HIKSHLIMLSAFVIGAYSAYW 172
           V         G ++ N K +K      HI   L+ML +F    ++   
Sbjct: 117 VTNVPPHEKYGYQSTNFKFIKKNVHRHHIFYLLVMLLSFSFIIFTYLI 164


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q46942 Uncharacterized protein yqeI n=36 Tax=Enterobact...   251   2e-65
UniRef50_B4SXG5 Transcriptional regulatory protein, C n=31 Tax=S...   221   3e-56
UniRef50_B7LP57 Putative regulatory protein n=2 Tax=Enterobacter...   213   6e-54
UniRef50_A6T554 Putative sensory transducer n=1 Tax=Klebsiella p...   206   9e-52
UniRef50_UPI0001826357 putative regulatory protein n=1 Tax=Enter...   186   9e-46
UniRef50_UPI0001C33D1D hypothetical protein CATC2_20487 n=1 Tax=...   168   2e-40
UniRef50_UPI000182700F transcriptional regulatory protein, C n=1...   167   3e-40
UniRef50_C6UPQ2 Predicted protein n=12 Tax=Escherichia coli O157...   161   2e-38
UniRef50_C1MAT2 Predicted protein n=2 Tax=Citrobacter RepID=C1MA...   161   2e-38
UniRef50_C4SC03 Transcriptional regulatory protein n=2 Tax=Yersi...   159   1e-37
UniRef50_B3INB4 Transcriptional regulatory protein, C n=2 Tax=En...   157   3e-37
UniRef50_C4UJG3 Transcriptional regulator n=1 Tax=Yersinia rucke...   157   5e-37
UniRef50_C4SUH9 Putative uncharacterized protein n=1 Tax=Yersini...   156   8e-37
UniRef50_B2VGK3 Putative transcriptional regulator n=1 Tax=Erwin...   151   3e-35
UniRef50_C4SF84 DNA-binding winged-HTH domains n=1 Tax=Yersinia ...   150   6e-35
UniRef50_A0KHX7 Transcriptional regulatory protein, C terminal n...   149   1e-34
UniRef50_C4T6D4 DNA-binding winged-HTH domains n=1 Tax=Yersinia ...   148   2e-34
UniRef50_C1MDX4 Putative uncharacterized protein n=1 Tax=Citroba...   148   2e-34
UniRef50_P15795 Cholera toxin transcriptional activator n=121 Ta...   148   2e-34
UniRef50_B5FBZ3 Toxin transcriptional activator ToxR n=3 Tax=Vib...   144   2e-33
UniRef50_C7BJK4 Putative membrane protein n=1 Tax=Photorhabdus a...   144   3e-33
UniRef50_Q2NSQ9 Putative uncharacterized protein n=1 Tax=Sodalis...   143   7e-33
UniRef50_D2YQP0 Transmembrane regulatory protein ToxR n=7 Tax=Vi...   140   4e-32
UniRef50_A8GBW4 Transcriptional regulator, CadC n=1 Tax=Serratia...   140   5e-32
UniRef50_B2D6Y9 ToxR n=2 Tax=Vibrio cholerae RepID=B2D6Y9_VIBCH       137   4e-31
UniRef50_A8GL29 Transcriptional regulator, CadC n=2 Tax=Serratia...   137   5e-31
UniRef50_A8GJD8 Transcriptional regulator, CadC n=1 Tax=Serratia...   136   7e-31
UniRef50_C4SV61 Putative uncharacterized protein n=1 Tax=Yersini...   135   2e-30
UniRef50_Q9RHQ9 Transmembrane regulatory protein ToxR n=2 Tax=Gr...   134   4e-30
UniRef50_C4T4W9 DNA-binding winged-HTH domains n=1 Tax=Yersinia ...   134   4e-30
UniRef50_C2LLY1 Regulatory protein n=9 Tax=Enterobacteriaceae Re...   133   8e-30
UniRef50_C9PH99 Putative uncharacterized protein n=1 Tax=Vibrio ...   132   2e-29
UniRef50_A8AP73 Putative uncharacterized protein n=1 Tax=Citroba...   131   2e-29
UniRef50_Q1Z5R8 Transcription activator ToxR n=4 Tax=Photobacter...   130   4e-29
UniRef50_B2VDV6 Putative transcriptional regulatory protein n=1 ...   130   4e-29
UniRef50_C4UHM9 Transcriptional regulatory protein, C n=1 Tax=Ye...   130   4e-29
UniRef50_D0XFV2 Putative uncharacterized protein n=1 Tax=Vibrio ...   129   8e-29
UniRef50_D2TQU5 Putative transcriptional regulator n=2 Tax=Enter...   128   2e-28
UniRef50_D0ZEM9 Putative uncharacterized protein n=1 Tax=Edwards...   127   4e-28
UniRef50_D2T558 Protein rcaC n=3 Tax=Erwinia RepID=D2T558_ERWPY       126   7e-28
UniRef50_A3USG7 Cholera toxin transcriptional activator n=1 Tax=...   125   1e-27
UniRef50_C4SZK7 Putative uncharacterized protein n=1 Tax=Yersini...   124   4e-27
UniRef50_D0YZ11 Transcriptional activator ToxR n=1 Tax=Photobact...   123   7e-27
UniRef50_C9QE85 Putative uncharacterized protein n=1 Tax=Vibrio ...   121   2e-26
UniRef50_A5L3N2 DNA-binding transcriptional activator n=2 Tax=Vi...   121   3e-26
UniRef50_A8GL31 Transcriptional regulator, CadC n=1 Tax=Serratia...   118   2e-25
UniRef50_A1JPG4 Possible reguatory protein n=5 Tax=Yersinia RepI...   117   6e-25
UniRef50_C4SAM2 Possible regulatory protein n=1 Tax=Yersinia mol...   116   6e-25
UniRef50_Q12IZ6 Transcriptional regulatory protein-like protein ...   116   9e-25
UniRef50_C9NME3 Putative transcriptional activator ToxR n=1 Tax=...   116   9e-25
UniRef50_D1RYQ0 Transcriptional regulator, CadC n=1 Tax=Serratia...   115   1e-24
UniRef50_Q5E5W5 Transcriptional regulatory protein n=2 Tax=Vibri...   114   2e-24
UniRef50_A6AKR5 Transcriptional regulatory protein, C n=3 Tax=Vi...   114   3e-24
UniRef50_D2T5X7 Uncharacterized protein yqeI n=2 Tax=Erwinia pyr...   114   3e-24
UniRef50_Q15PB9 Lysine decarboxylase transcriptional regulator, ...   114   4e-24
UniRef50_B2VGZ0 Transcriptional regulatory protein n=1 Tax=Erwin...   114   4e-24
UniRef50_D2TAS4 Cholera toxin transcriptional activator n=2 Tax=...   113   6e-24
UniRef50_Q12S47 Transcriptional regulatory protein-like protein ...   113   7e-24
UniRef50_B6XAC7 Putative uncharacterized protein n=2 Tax=Provide...   113   7e-24
UniRef50_Q1IIR6 Transcriptional regulatory protein-like n=1 Tax=...   112   1e-23
UniRef50_B4SI58 Transcriptional regulator domain protein n=3 Tax...   112   1e-23
UniRef50_A6XSQ7 ToxR2 n=9 Tax=Vibrio RepID=A6XSQ7_VIBCH               112   1e-23
UniRef50_A5L317 Putative uncharacterized protein n=1 Tax=Vibrion...   112   1e-23
UniRef50_B2VCE9 Probable transcriptional regulator n=1 Tax=Erwin...   112   2e-23
UniRef50_B4EUN0 Putative membrane protein n=2 Tax=Proteus mirabi...   111   2e-23
UniRef50_Q1YZ13 Transcriptional activator CadC n=1 Tax=Photobact...   111   2e-23
UniRef50_P23890 Transcriptional activator cadC n=99 Tax=Enteroba...   111   2e-23
UniRef50_Q21GQ2 Transcriptional regulatory protein-like protein ...   111   3e-23
UniRef50_Q47YD8 Putative transcriptional regulator n=1 Tax=Colwe...   110   5e-23
UniRef50_C1M6R9 Predicted protein n=2 Tax=Citrobacter RepID=C1M6...   110   5e-23
UniRef50_C9PHD6 Transcriptional activator ToxR n=1 Tax=Vibrio fu...   110   5e-23
UniRef50_D0YIE0 Transcriptional regulator, CadC n=6 Tax=Klebsiel...   110   6e-23
UniRef50_B1KKU4 Transcriptional regulator, CadC n=1 Tax=Shewanel...   110   6e-23
UniRef50_D0XI00 Putative uncharacterized protein n=1 Tax=Vibrio ...   110   6e-23
UniRef50_B3PJR7 Putative Transcriptional regulator CadC n=1 Tax=...   109   1e-22
UniRef50_B2VJM5 Probable transcriptional regulator n=1 Tax=Erwin...   108   2e-22
UniRef50_D0I6A9 Putative transcriptional activator ToxR n=1 Tax=...   108   3e-22
UniRef50_Q2S7R1 DNA-binding winged-HTH domains n=1 Tax=Hahella c...   108   3e-22
UniRef50_Q1IKQ5 Lysine decarboxylase transcriptional regulator, ...   107   3e-22
UniRef50_UPI00018266EF transcriptional regulator, CadC n=1 Tax=E...   107   3e-22
UniRef50_C9QI52 Cholera toxin transcriptional activator n=1 Tax=...   107   3e-22
UniRef50_B8CR40 Transcriptional activator CadC n=1 Tax=Shewanell...   107   4e-22
UniRef50_Q1Z6V5 Putative uncharacterized protein n=1 Tax=Photoba...   107   4e-22
UniRef50_C0Q6W1 Possible transmembrane regulator n=32 Tax=Entero...   107   4e-22
UniRef50_A4XNQ3 Transcriptional regulator, CadC n=1 Tax=Pseudomo...   107   5e-22
UniRef50_Q7VR33 Transcriptional regulatory protein, C terminal d...   107   5e-22
UniRef50_D2T7N3 Probable regulatory protein embR n=3 Tax=Erwinia...   107   6e-22
UniRef50_A6CVT0 Putative uncharacterized protein n=1 Tax=Vibrio ...   106   7e-22
UniRef50_Q1IHU2 Lysine decarboxylase transcriptional regulator, ...   106   8e-22
UniRef50_B7VRN4 Putative uncharacterized protein n=2 Tax=Vibrio ...   105   1e-21
UniRef50_B2Q575 Putative uncharacterized protein n=1 Tax=Provide...   105   1e-21
UniRef50_C3NSU2 Transcriptional activator of cad operon n=39 Tax...   105   2e-21
UniRef50_Q1IIZ5 Transcriptional regulatory protein-like n=1 Tax=...   105   2e-21
UniRef50_A4YSP3 Putative uncharacterized protein n=1 Tax=Bradyrh...   105   2e-21
UniRef50_D2A9T6 Transcriptional regulator, CadC n=3 Tax=Shigella...   105   2e-21
UniRef50_Q1ITK1 Lysine decarboxylase transcriptional regulator, ...   104   2e-21
UniRef50_B2JV11 Transcriptional regulator, winged helix family n...   104   3e-21
UniRef50_A4CYI6 Putative uncharacterized protein n=1 Tax=Synecho...   104   4e-21
UniRef50_UPI000197C3BF transcriptional regulator, CadC n=1 Tax=P...   104   4e-21
UniRef50_Q8D287 YqeI protein n=1 Tax=Wigglesworthia glossinidia ...   104   4e-21
UniRef50_A4X1M5 Two component transcriptional regulator, winged ...   104   4e-21
UniRef50_B9TBN5 Putative uncharacterized protein n=1 Tax=Ricinus...   103   5e-21
UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 T...   103   6e-21
UniRef50_B7RJ24 Putative regulatory protein, possibly two-compon...   103   6e-21
UniRef50_A6CY17 DNA-binding transcriptional activator n=2 Tax=Vi...   103   7e-21
UniRef50_Q89V41 Bll1217 protein n=2 Tax=Bradyrhizobium japonicum...   103   8e-21
UniRef50_B1KAJ7 Transcriptional regulator, winged helix family n...   103   8e-21
UniRef50_A5VGJ6 Transcriptional regulator, CadC n=1 Tax=Sphingom...   102   1e-20
UniRef50_A4SQG5 Transcriptional activator CadC n=2 Tax=Aeromonas...   102   1e-20
UniRef50_C9NXT9 Cholera toxin transcriptional activator n=2 Tax=...   102   1e-20
UniRef50_B2JV05 Transcriptional regulator, winged helix family n...   102   1e-20
UniRef50_Q0ASG1 Two component transcriptional regulator, winged ...   102   1e-20
UniRef50_C9Y6H6 Putative uncharacterized protein n=1 Tax=Curviba...   102   1e-20
UniRef50_A4FNN5 Response regulator, two-component system n=12 Ta...   102   1e-20
UniRef50_Q67JF4 Two-component response regulator n=1 Tax=Symbiob...   102   1e-20
UniRef50_Q2SHD7 Probable transcriptional regulator n=1 Tax=Hahel...   102   1e-20
UniRef50_A1S359 Putative transcriptional regulator, CadC n=1 Tax...   102   2e-20
UniRef50_A6D0K2 Putative uncharacterized protein n=1 Tax=Vibrio ...   102   2e-20
UniRef50_Q1AZL3 Two component transcriptional regulator, winged ...   102   2e-20
UniRef50_B5R4U2 Possible transmembrane regulator n=37 Tax=Entero...   102   2e-20
UniRef50_C6IXU0 Transcriptional regulator domain-containing prot...   102   2e-20
UniRef50_Q12K29 Transcriptional regulatory protein-like protein ...   101   2e-20
UniRef50_Q1ZPR1 Transcriptional activator CadC n=1 Tax=Photobact...   101   2e-20
UniRef50_A6F962 Putative uncharacterized protein n=1 Tax=Moritel...   101   2e-20
UniRef50_D1TLX7 Transcriptional regulator, winged helix family n...   101   3e-20
UniRef50_C2HYC0 Transcriptional activator ToxR n=1 Tax=Vibrio ch...   101   3e-20
UniRef50_Q1ZVU4 Putative uncharacterized protein n=1 Tax=Photoba...   101   3e-20
UniRef50_C5EUU3 Two-component response regulator n=5 Tax=Bacteri...   101   3e-20
UniRef50_A8SVV6 Putative uncharacterized protein n=1 Tax=Coproco...   100   3e-20
UniRef50_A6UHF5 Transcriptional regulator domain protein n=13 Ta...   100   4e-20
UniRef50_Q988M4 Mll6677 protein n=1 Tax=Mesorhizobium loti RepID...   100   4e-20
UniRef50_B5CLM3 Putative uncharacterized protein n=1 Tax=Ruminoc...   100   4e-20
UniRef50_C5B7S6 Transcriptional activator CadC n=2 Tax=Enterobac...   100   4e-20
UniRef50_C0CI50 Putative uncharacterized protein n=1 Tax=Blautia...   100   5e-20
UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro...   100   5e-20
UniRef50_Q3KEV5 Putative transcriptional regulator n=2 Tax=Pseud...   100   5e-20
UniRef50_C5AMC0 Transcriptional regulator, winged helix family p...   100   5e-20
UniRef50_Q2C5Y8 Putative uncharacterized protein n=2 Tax=Photoba...   100   5e-20
UniRef50_Q3AVF0 Response regulator receiver domain protein (CheY...   100   7e-20
UniRef50_A8T8X6 Putative transcriptional regulator ToxR n=3 Tax=...   100   7e-20
UniRef50_B6FMI5 Putative uncharacterized protein n=7 Tax=Clostri...   100   9e-20
UniRef50_Q182M4 Two-component response regulator n=14 Tax=Clostr...   100   9e-20
UniRef50_Q2T8V0 Transcriptional regulator, putative n=9 Tax=pseu...   100   9e-20
UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax...    99   1e-19
UniRef50_B6EJP4 Putative uncharacterized protein n=1 Tax=Aliivib...    99   1e-19
UniRef50_B1J1E8 Two component transcriptional regulator, LuxR fa...    99   1e-19
UniRef50_B6EKJ8 Putative transcriptional regulator n=1 Tax=Aliiv...    99   1e-19
UniRef50_D1VIP6 Two component transcriptional regulator, winged ...    99   1e-19
UniRef50_Q987X1 Transcriptional regulator n=1 Tax=Mesorhizobium ...    99   1e-19
UniRef50_B1M5U0 Transcriptional regulator domain protein n=3 Tax...    99   1e-19
UniRef50_B0G6G3 Putative uncharacterized protein n=2 Tax=Lachnos...    99   1e-19
UniRef50_A5L4K5 Putative uncharacterized protein n=1 Tax=Vibrion...    99   1e-19
UniRef50_A5P8P2 Transcription activator ToxR n=1 Tax=Erythrobact...    99   1e-19
UniRef50_D0X6S7 Putative uncharacterized protein n=1 Tax=Vibrio ...    99   1e-19
UniRef50_B1KWY3 DNA-binding response regulator n=33 Tax=Firmicut...    99   1e-19
UniRef50_Q2NVH3 Putative uncharacterized protein n=1 Tax=Sodalis...    99   1e-19
UniRef50_B1JQB0 Transcriptional regulator, CadC n=18 Tax=Yersini...    99   1e-19
UniRef50_Q03AM3 DNA-binding response regulator, OmpR family (Rec...    99   2e-19
UniRef50_C5ZZN9 Putative uncharacterized protein n=1 Tax=Escheri...    99   2e-19
UniRef50_Q5E341 DNA-binding transcriptional activator CadC n=9 T...    99   2e-19
UniRef50_A5KUS7 DNA-binding transcriptional activator n=1 Tax=Vi...    99   2e-19
UniRef50_B2T985 Transcriptional regulator, winged helix family n...    98   2e-19
UniRef50_A5ED47 Transcriptional regulator n=1 Tax=Bradyrhizobium...    98   2e-19
UniRef50_B1XXD9 Two component transcriptional regulator, winged ...    98   3e-19
UniRef50_Q12T20 Two component transcriptional regulator, winged ...    98   3e-19
UniRef50_C7RA75 Transcriptional regulator, CadC n=1 Tax=Kangiell...    98   3e-19
UniRef50_A3D2S0 Transcriptional regulator, CadC n=3 Tax=Shewanel...    98   3e-19
UniRef50_D2TJ93 Lateral flagellar transmembrane regulator n=1 Ta...    98   3e-19
UniRef50_Q2C702 Putative uncharacterized protein n=1 Tax=Photoba...    98   3e-19
UniRef50_B5WFU1 Transcriptional regulator, winged helix family n...    98   3e-19
UniRef50_C6LC42 DNA-binding response regulator RegX3 n=3 Tax=Clo...    98   3e-19
UniRef50_Q12RS3 Transcriptional regulatory protein-like protein ...    98   3e-19
UniRef50_Q0HTC3 Lysine decarboxylase transcriptional regulator, ...    98   4e-19
UniRef50_C6CZ95 Two component transcriptional regulator, winged ...    97   4e-19
UniRef50_B2SNG2 Transcriptional regulatory protein, C terminal n...    97   4e-19
UniRef50_Q6LJ01 Putative uncharacterized protein n=2 Tax=Photoba...    97   4e-19
UniRef50_C6D5Y8 Putative two component transcriptional regulator...    97   4e-19
UniRef50_B1T3M3 Transcriptional regulator, winged helix family n...    97   4e-19
UniRef50_B1KFP5 Transcriptional regulator, CadC n=1 Tax=Shewanel...    97   4e-19
UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC...    97   5e-19
UniRef50_A3EHX3 Putative transcriptional regulator ToxR n=6 Tax=...    97   5e-19
UniRef50_C6AVM9 Response regulator receiver protein n=1 Tax=Rhiz...    97   5e-19
UniRef50_A5N5X6 Transcriptional regulator n=5 Tax=Clostridium Re...    97   6e-19
UniRef50_B6FSP5 Putative uncharacterized protein n=1 Tax=Clostri...    97   6e-19
UniRef50_C7BJM7 Putative uncharacterized protein n=1 Tax=Photorh...    97   6e-19
UniRef50_B1YN09 Transcriptional regulator, winged helix family n...    97   6e-19
UniRef50_A6X2C4 Two component transcriptional regulator, winged ...    97   6e-19
UniRef50_C6D9U3 Transcriptional regulator, CadC n=5 Tax=Pectobac...    97   6e-19
UniRef50_C8WHB5 Two component transcriptional regulator, winged ...    97   7e-19
UniRef50_D1C5Q5 Two component transcriptional regulator, winged ...    97   7e-19
UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5              97   7e-19
UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=...    97   7e-19
UniRef50_B5VUJ9 Two component transcriptional regulator, winged ...    97   7e-19
UniRef50_A7B4Z9 Putative uncharacterized protein n=2 Tax=Ruminoc...    97   7e-19
UniRef50_A4C7M7 TolB domain protein n=1 Tax=Pseudoalteromonas tu...    97   8e-19
UniRef50_C0A842 Response regulator receiver protein n=5 Tax=Bact...    96   9e-19
UniRef50_Q1MMK4 Putative transcriptional regulator n=1 Tax=Rhizo...    96   1e-18
UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac...    96   1e-18
UniRef50_C7MMC5 Response regulator with CheY-like receiver domai...    96   1e-18
UniRef50_C6HXQ3 Two component transcriptional regulator, winged ...    96   1e-18
UniRef50_B8ESP8 Transcriptional regulator domain protein n=4 Tax...    96   1e-18
UniRef50_Q1MK68 Putative adenylate cyclase n=1 Tax=Rhizobium leg...    96   2e-18
UniRef50_B1KA17 Transcriptional regulator, winged helix family n...    96   2e-18
UniRef50_Q2C4S0 Putative uncharacterized protein n=1 Tax=Photoba...    96   2e-18
UniRef50_B9YAL6 Putative uncharacterized protein n=1 Tax=Holdema...    96   2e-18

Sequences not found previously or not previously below threshold:

UniRef50_C6LEL9 DNA-binding response regulator RegX3 n=3 Tax=Clo...   103   6e-21
UniRef50_D1C280 Two component transcriptional regulator, winged ...   102   1e-20
UniRef50_Q89XL4 Transcriptional regulator n=1 Tax=Bradyrhizobium...   102   1e-20
UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r...   102   2e-20
UniRef50_Q05943 Transcriptional regulatory protein glnR n=102 Ta...   101   2e-20
UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria...   101   3e-20
UniRef50_Q52990 Phosphate regulon transcriptional regulatory pro...   101   3e-20
UniRef50_Q1AYG8 Two component transcriptional regulator, winged ...   101   3e-20
UniRef50_D1C683 Two component transcriptional regulator, winged ...   100   4e-20
UniRef50_B8G7R1 Two component transcriptional regulator, winged ...   100   4e-20
UniRef50_C8WRL2 Two component transcriptional regulator, winged ...   100   6e-20
UniRef50_P45606 Phosphate regulon transcriptional regulatory pro...   100   7e-20
UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep...   100   9e-20
UniRef50_UPI00017890B9 putative two component transcriptional re...    99   1e-19
UniRef50_Q1IVX4 Two component transcriptional regulator, winged ...    99   1e-19
UniRef50_A5UT44 Two component transcriptional regulator, winged ...    99   2e-19
UniRef50_C8VW64 Two component transcriptional regulator, winged ...    99   2e-19
UniRef50_B5EQN9 Two component transcriptional regulator, winged ...    99   2e-19
UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=...    98   3e-19
UniRef50_B8FSL6 Two component transcriptional regulator, winged ...    98   3e-19
UniRef50_C4L1R5 Two component transcriptional regulator, winged ...    98   3e-19
UniRef50_C6D6P8 Two component transcriptional regulator, winged ...    98   3e-19
UniRef50_Q1IMA9 Two component transcriptional regulator, winged ...    98   3e-19
UniRef50_Q2BDN1 Two component transcriptional regulator, winged ...    98   3e-19
UniRef50_D0MGI0 Two component transcriptional regulator, winged ...    98   4e-19
UniRef50_A3ER20 Putative two component transcriptional regulator...    97   4e-19
UniRef50_C8WRL6 Two component transcriptional regulator, winged ...    97   4e-19
UniRef50_A1HRL8 Two component transcriptional regulator, winged ...    97   4e-19
UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteob...    97   5e-19
UniRef50_A9AWM9 Two component transcriptional regulator, winged ...    97   7e-19
UniRef50_C4L703 Two component transcriptional regulator, winged ...    97   7e-19
UniRef50_B1XM84 Two-component response regulator n=8 Tax=Cyanoba...    97   8e-19
UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu...    97   8e-19
UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri...    96   9e-19
UniRef50_B7GTW3 Response regulator receiver protein n=6 Tax=Bifi...    96   9e-19
UniRef50_B5JD22 Response regulator receiver domain protein n=1 T...    96   1e-18
UniRef50_A8F5W8 Two component transcriptional regulator, winged ...    96   1e-18
UniRef50_D0MIF5 Two component transcriptional regulator, winged ...    96   1e-18
UniRef50_B9L1T3 Phosphate regulatory protein n=1 Tax=Thermomicro...    96   1e-18
UniRef50_O34903 Uncharacterized transcriptional regulatory prote...    96   1e-18
UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F...    96   1e-18
UniRef50_B8FQS3 Two component transcriptional regulator, winged ...    96   2e-18
UniRef50_A9AYH1 Two component transcriptional regulator, winged ...    96   2e-18
UniRef50_Q1AZ24 Two component transcriptional regulator, winged ...    96   2e-18
UniRef50_A5UQY1 Two component transcriptional regulator, winged ...    95   2e-18

>UniRef50_Q46942 Uncharacterized protein yqeI n=36 Tax=Enterobacteriaceae
           RepID=YQEI_ECOLI
          Length = 269

 Score =  251 bits (640), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 269/269 (100%), Positives = 269/269 (100%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE
Sbjct: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA
Sbjct: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
           HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK
Sbjct: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240
           PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG
Sbjct: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240

Query: 241 MIVMACNKNYNQHEVANCLTLSYREVNRD 269
           MIVMACNKNYNQHEVANCLTLSYREVNRD
Sbjct: 241 MIVMACNKNYNQHEVANCLTLSYREVNRD 269


>UniRef50_B4SXG5 Transcriptional regulatory protein, C n=31 Tax=Salmonella enterica
           RepID=B4SXG5_SALNS
          Length = 254

 Score =  221 bits (562), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 109/268 (40%), Positives = 143/268 (53%), Gaps = 15/268 (5%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M WIINDNIEF PE  +L S+   DLN++LTTPASRCL LLLE  P VV+QQ FF +VWE
Sbjct: 1   MLWIINDNIEFNPEMNRLASLSRPDLNIILTTPASRCLRLLLENAPSVVSQQTFFQKVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E+GM V  NTLYQNISIIRRG R VG+   +LI TVPRRGF+I   ++I     + +   
Sbjct: 61  EDGMVVSANTLYQNISIIRRGLRTVGENEDTLIITVPRRGFQIEPGVSIMTIRKDFAQAI 120

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                 P                  + +  KH    L M   F +G       W     K
Sbjct: 121 EKKGETP---------------PRMSGRWFKHYVPVLWMTGTFAVGILLGTISWQTVPDK 165

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240
            F+  Y  V    GCHF    + I+    F  YK+ IL +G++C+K+PW+YFP +  +P 
Sbjct: 166 DFYDRYTLVETTQGCHFFSRNEDIESGSRFASYKSMILKTGMDCQKYPWVYFPSSSRTPA 225

Query: 241 MIVMACNKNYNQHEVANCLTLSYREVNR 268
           +  + C + Y       C+TL +R V  
Sbjct: 226 VTALICQQPYKTRGDTGCVTLFFRGVTH 253


>UniRef50_B7LP57 Putative regulatory protein n=2 Tax=Enterobacteriaceae
           RepID=B7LP57_ESCF3
          Length = 307

 Score =  213 bits (542), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 126/265 (47%), Positives = 171/265 (64%), Gaps = 1/265 (0%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           MYWIIN+ IEF P  +KLIS  N +LNVVLT+PASRCL LLLEA PDVV+QQ+ F +VWE
Sbjct: 40  MYWIINEFIEFRPASKKLISRRNPELNVVLTSPASRCLLLLLEASPDVVSQQELFKKVWE 99

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           +EGM VPTNTLYQNISI+RRG +AVG+T  +LIAT+PR+GFKI   + I     +     
Sbjct: 100 DEGMYVPTNTLYQNISIVRRGLKAVGETEQTLIATIPRKGFKIEQGVKIVRMASDEL-FP 158

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                             +   +     ++  +    IML AF++GA   ++ W++ +  
Sbjct: 159 EEEQEEEQTGNAEELLLPVNEHQQPRISLMSRLSLVFIMLLAFIVGATGMHFYWHSGETT 218

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240
           PFF DYK + + NGCHF V +D+ DG   F + KT I  +G++CKK+PW+Y PL+K+ PG
Sbjct: 219 PFFADYKLLEQENGCHFYVKDDSHDGDNNFARIKTLITRTGLDCKKYPWVYLPLSKTDPG 278

Query: 241 MIVMACNKNYNQHEVANCLTLSYRE 265
           + V+ C K+Y  H V  C+TLS+RE
Sbjct: 279 LAVLVCKKDYLVHSVPGCMTLSFRE 303


>UniRef50_A6T554 Putative sensory transducer n=1 Tax=Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578 RepID=A6T554_KLEP7
          Length = 274

 Score =  206 bits (523), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 115/274 (41%), Positives = 168/274 (61%), Gaps = 5/274 (1%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           MYWIIN NIEFWPE+++LIS+ N   +V LT PAS CL LLLEA P++V+QQ FF +VWE
Sbjct: 1   MYWIINKNIEFWPENKRLISLKNPAQSVTLTAPASHCLVLLLEATPELVSQQVFFKKVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           +EG+ VP NTLYQNISI+RRG R VG+T +S++ TVPR+GF I+ ++N++          
Sbjct: 61  DEGILVPANTLYQNISIVRRGLRDVGETDNSIVVTVPRKGFHINPNVNVERMDKKPLNSE 120

Query: 121 HTHNAP--PAIKVNAGYKESIGG---AKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWN 175
             ++        V      +  G          I     + LIML + + G  S +++W+
Sbjct: 121 SYNDITIISQDDVAEKNPTTEPGDIVQTATRKNIGAKATTFLIMLLSLLAGCLSFHYIWH 180

Query: 176 NNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLA 235
            +  KPFF  Y  V    GCHF   +D    + +F+ YK+ I  SG++CKK+P++YF ++
Sbjct: 181 FHDEKPFFSSYTLVENDRGCHFYTKDDNHAKVDKFNYYKSLIFKSGLDCKKYPFVYFSMS 240

Query: 236 KSSPGMIVMACNKNYNQHEVANCLTLSYREVNRD 269
           + SPG IV  C K+Y++   A C+TLS+R +  +
Sbjct: 241 QMSPGFIVFICRKSYSEKVSAGCVTLSFRGIVYE 274


>UniRef50_UPI0001826357 putative regulatory protein n=1 Tax=Enterobacter cancerogenus ATCC
           35316 RepID=UPI0001826357
          Length = 265

 Score =  186 bits (471), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 73/266 (27%), Positives = 117/266 (43%), Gaps = 14/266 (5%)

Query: 3   WIINDNIEFWPEHRKLISVHN-ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
           ++IND++ F P+ R+L       D  V+L  P S CL LLLE   +V+ Q+  F+ VWE+
Sbjct: 5   FLINDSVLFEPDKRRLCPRDGYPDRAVLLHGPVSECLLLLLEHNGEVLTQRYLFSAVWEK 64

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN--IQNHVINSSTD 119
           +G  V TN LYQ I+ IR+  ++VG    +++ TVP+ GFK    +        I     
Sbjct: 65  QGAIVTTNALYQTIASIRKALKSVGLA-ENIVQTVPKEGFKAVAALQSGTLEEFILPVAT 123

Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179
           A     P   K              F++KI   I + L ++S FV+              
Sbjct: 124 APKDGQPEEEKAYLPAPVVRPRKSLFSSKIAYGIAALLFLVSCFVL-------YQQLKPG 176

Query: 180 KPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239
              F DY  +  + GC    +    D ++  +K+ + +    + C     +Y  L     
Sbjct: 177 DAPFADYHFIGNVEGCDVYSS--LHDKMQSQNKFTSLVKRYPVQCSAGGRVYITLNHYQQ 234

Query: 240 GMIVMACNKNYNQHEVANCLTLSYRE 265
           G  V+ C+K  +    A C ++ YRE
Sbjct: 235 GTSVIVCDKQADLAG-AQCESILYRE 259


>UniRef50_UPI0001C33D1D hypothetical protein CATC2_20487 n=1 Tax=Citrobacter youngae ATCC
           29220 RepID=UPI0001C33D1D
          Length = 257

 Score =  168 bits (425), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/266 (20%), Positives = 101/266 (37%), Gaps = 20/266 (7%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++IN  +EF P+++ L++       + L  PAS C   L+    D+V+Q    T  W E 
Sbjct: 2   YLINQLVEFNPDNKSLVNRQT-GRTIQLQLPASLCFLYLITHASDIVSQNTLMTVGWGER 60

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
                 NT YQ I  +R     VG      + T+ RRG +++ +  ++     + TD  +
Sbjct: 61  NNVTTANTFYQAILTLRNALADVG-LPRDTVKTISRRGLRLNENTQVE-----AITDLQS 114

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL-WNNNQPKP 181
             +P ++       + I  A     +    I    I+ S  ++ A    WL W   +P  
Sbjct: 115 DVSPLSVIEERAPAKIIPTAPQQPTQ----IAWWNILFSVGIVIATLVIWLVWYQTRPVM 170

Query: 182 FFKDY----KTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKS 237
            F  +      +     C    + +  D    F+  +         C+ +  ++      
Sbjct: 171 PFSKFVSVSMQIPSRQNCKIYYSPNEYDQQGYFNLMQLH----PFLCENNKHVFLTGYLK 226

Query: 238 SPGMIVMACNKNYNQHEVANCLTLSY 263
           +  M+   C+K+      A C T  Y
Sbjct: 227 AERMVAFVCDKDARTDAHAFCTTHYY 252


>UniRef50_UPI000182700F transcriptional regulatory protein, C n=1 Tax=Enterobacter
           cancerogenus ATCC 35316 RepID=UPI000182700F
          Length = 269

 Score =  167 bits (424), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 73/271 (26%), Positives = 116/271 (42%), Gaps = 14/271 (5%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
           ++IIN+ +EF P    L  ++N D  VVL +PA RCL LL+E    +V QQDF   VW+ 
Sbjct: 4   HYIINNIVEFHPAASTLRDINNPDRVVVLNSPAGRCLLLLIERAGSIVTQQDFLDIVWQR 63

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
            GM V  NT YQNISI+R+G + +G      I T+PR G  + +D  I    I       
Sbjct: 64  RGMLVSPNTYYQNISILRKGLKKIGFDVDP-IVTIPRIGLTLASDTQIV---IKEPATPA 119

Query: 122 THNAPPAIKVNAGYKESIGGAKNFN-------NKILKHIKSHLIMLSAFVIGAYSAYWLW 174
              A P   V     +     +          +++ +      +++   V+         
Sbjct: 120 PEMAVPETAVQQDTADLRLNEEPGENALPERDSRLARARWLAGMLMILLVLLMSVGIIGH 179

Query: 175 NNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPL 234
           +N +   F +DY     I  CH  + +  I    E  K    +      C  +PW+Y   
Sbjct: 180 SNARENRFIEDYHFATTIGACHVWLAKG-IQTQSERAKALAYVDQFKAECADYPWIYISW 238

Query: 235 AKSSPGMIVMACNKNYNQHEVANCLTLSYRE 265
            +  P   V+ C+K+  +     C++  + E
Sbjct: 239 YELLPRASVIRCDKSMKE--PNRCISDYFIE 267


>UniRef50_C6UPQ2 Predicted protein n=12 Tax=Escherichia coli O157:H7
           RepID=C6UPQ2_ECO5T
          Length = 270

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 82/275 (29%), Positives = 122/275 (44%), Gaps = 16/275 (5%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIND + F     KL S+  ++  + LT PA +CL LLL+    VV+   FF +VW 
Sbjct: 1   MIYIINDEVRFNSSSNKLTSLLTSEEVI-LTYPAGKCLKLLLDNAYSVVSHNQFFEKVWS 59

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTT--HSLIATVPRRGFKIHNDINIQNHVINSST 118
           +    V TNTLYQNIS+IRR FR +   T  + +I TVPR+GFKI+ +I+I     N   
Sbjct: 60  DSSADVATNTLYQNISMIRRSFREISSATIFNDVIRTVPRKGFKINEEISITVLDNN--- 116

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLI-MLSAFVIGAYSAYWLWNNN 177
             H  N     + N  + E+I                 ++   +A+ I   S+Y+     
Sbjct: 117 --HNENESVESEENGTHTENINKNHIAKGIFTTKNTLLIVCFFAAWGIVYISSYFFDMAF 174

Query: 178 QPKPF-------FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWL 230
           Q K         F +Y       GC +       + +        ++    INCK HP++
Sbjct: 175 QSKSHTIKKIDAFSNYAQHPTQEGCSYFYDNKYFNSVDMLSPIIEKLQKMEINCKIHPYI 234

Query: 231 YFPLAKSSPGMIVMACNKNYNQHEVANCLTLSYRE 265
           Y     S  G     C++  N     NC +L Y+ 
Sbjct: 235 YIATNDSMSGFYAFTCSQMLNSESPNNCNSLYYKA 269


>UniRef50_C1MAT2 Predicted protein n=2 Tax=Citrobacter RepID=C1MAT2_9ENTR
          Length = 261

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 101/262 (38%), Gaps = 15/262 (5%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++I + I F P  + L  V + +  + L   AS CL LL++    VV+Q +     W + 
Sbjct: 9   YLIENRIIFTPATQCLARVDHPNQRIKLKHSASLCLLLLIQHRGQVVSQNELLEFGWGKN 68

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
             +V  N  YQ+I  +R+      +    LI T+PR+G  I  + +IQ            
Sbjct: 69  HRQVSFNAFYQSILSLRKS-LLQLELEQPLITTIPRKGLIIQEEFDIQVIETPEE----- 122

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
           ++A     +          A      ++   ++ ++ L+  +       W  +++    +
Sbjct: 123 NSASAEESLAPDATIEEFLADTPRQPLITAAETVMLALTLIICVLILYPWQASDD----Y 178

Query: 183 FKDYKTVAE-INGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGM 241
           F  Y T  +   GC +    D       F ++   I  +   C+ H ++Y      S  +
Sbjct: 179 FSGYITADKAPTGCQYYFNNDA----SNFTRHTAFIDKNPGLCQSHKFIYITTYPESKKL 234

Query: 242 IVMACNKNYNQHEVANCLTLSY 263
            V+ C       +   C ++ Y
Sbjct: 235 SVLVCRSPIKARQENACQSVYY 256


>UniRef50_C4SC03 Transcriptional regulatory protein n=2 Tax=Yersinia
           RepID=C4SC03_YERMO
          Length = 281

 Score =  159 bits (401), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/272 (23%), Positives = 115/272 (42%), Gaps = 15/272 (5%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            +IIN  + F  +  +L  +      + L  P SRCL LLL+    V++Q +F   VWE 
Sbjct: 7   KFIINGKVCFLSDEHRLEPLGEQGSAISLNVPVSRCLLLLLQRKGSVISQSEFVYEVWES 66

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
           +G     NT +QNI ++R+  +  G    S+I TVP+ G +    +   N   + ST   
Sbjct: 67  KGQFANANTYFQNIHLLRKALKTSGI-EESIIKTVPKEGIRFTGTVTYLNESNSESTAEL 125

Query: 122 THNAPPAIKVNAGYKE----------SIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171
           T N    I   A   +              A  F+++ + +IK   ++    +       
Sbjct: 126 TENETRNIANEASADKQAPDVIDVKMQPPFAPFFSSQKMLYIKIFFVLGLLSIFILLLLN 185

Query: 172 WLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLY 231
           +  + N+   FF +Y+ + E+N C    +  +I  L    +Y   + +   +C+     Y
Sbjct: 186 FHKDTNKNTDFFSNYQLIGEVNQCKVYASNTSI--LWPRSEYLDFVKNKNTSCQPGQVAY 243

Query: 232 FPLAKSSPGMIVMACNKNYNQHEVANCLTLSY 263
             +       ++  C+K+ +    A+CLT  Y
Sbjct: 244 IAMNIFRTRALIHICDKSVSN--TASCLTKLY 273


>UniRef50_B3INB4 Transcriptional regulatory protein, C n=2 Tax=Enterobacteriaceae
           RepID=B3INB4_ECOLX
          Length = 270

 Score =  157 bits (398), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 105/272 (38%), Gaps = 9/272 (3%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++I   + +  +   ++     + ++ L+ PA R L  L+     ++ + D   +VWE
Sbjct: 1   MKYLIELTMLYEVDTGMIMINGEEESSIKLSNPAGRLLYELIINNGKILDRDDLIKKVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           + G+   + +L   IS IR+ FR +G     LI T+  +GF +   I          +  
Sbjct: 61  DHGLSGSSVSLNVAISEIRKAFRTLGCAPL-LIKTIRGKGFSLAAHIEHHTVRPPVVSTL 119

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
              +A  A    A  K++    +  +   L      L++++         +   +  +  
Sbjct: 120 SEQSASEAFDTLAHKKDADPPKQLISLHRLFISLCTLLLITVIGTAVLLLHQRDSYAESL 179

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDG--LKEFDKYKTRILDSGINCKK-HPWLYFPLAKS 237
               D   + +++ C   +  + +       F+  K  I    I+C+     +Y+   K 
Sbjct: 180 K-DSDMYLLGKVDRCTVYLINNNMYQPRQHHFNHVKEVIASQHIDCQHQVADVYYSRFKK 238

Query: 238 SP--GMIVMACNKNYNQHEVANCLTLSYREVN 267
           S      +  C +  +  +  NC++  YR + 
Sbjct: 239 SQIENYFLAICYQQDSIDDYKNCIS--YRRLT 268


>UniRef50_C4UJG3 Transcriptional regulator n=1 Tax=Yersinia ruckeri ATCC 29473
           RepID=C4UJG3_YERRU
          Length = 262

 Score =  157 bits (396), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 54/266 (20%), Positives = 107/266 (40%), Gaps = 20/266 (7%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + IN+++ F+PE   + S       + +  P S+   + +      V+Q + +T  W E 
Sbjct: 5   YNINNSVLFYPESGDIASSLT-GNTIKINMPTSQLFEVFITRMGVAVSQNELYTAAWGEN 63

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
            + V  NTLYQNIS++R+  +  G  + SL  T+  +GF      ++  H +    D   
Sbjct: 64  SVNVTPNTLYQNISLLRKALQDSGIPSESL-KTLRGKGFIFTV-ASVVEHCVEDIQDVKD 121

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP--- 179
               P       Y +             K I  + ++L++ +I      +    N P   
Sbjct: 122 SEITPEKSEPTHYGK-------------KTIAYYSMLLTSLIIVFLGVLFYDYKNIPWRV 168

Query: 180 KPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239
             + KD+  +++INGC           +    K    +      C+ +P++Y   ++   
Sbjct: 169 NNYPKDFVFISKINGCSIF-NSTEGKSIVNNQKINRLVKTLPAECESYPYVYISYSERHA 227

Query: 240 GMIVMACNKNYNQHEVANCLTLSYRE 265
            + +++C  + N  E  +C T  +  
Sbjct: 228 TVSIISCRYDMNYTEQNDCKTEIFIN 253


>UniRef50_C4SUH9 Putative uncharacterized protein n=1 Tax=Yersinia frederiksenii
           ATCC 33641 RepID=C4SUH9_YERFR
          Length = 267

 Score =  156 bits (394), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 56/264 (21%), Positives = 113/264 (42%), Gaps = 15/264 (5%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + INDNI F+PE   L S       + +  P ++ L   +     +++Q D ++  W + 
Sbjct: 5   YTINDNITFYPESGILSS-SLGGARIKINVPTAQLLEAFVNRVGLIISQSDLYSIAWGDN 63

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
           G+ V  NTLYQNIS++R+  + +G +  + I TV  +GF        +  +     D   
Sbjct: 64  GVNVTPNTLYQNISLLRKALQDIGLSGEA-ITTVRGKGFIFTVTKVTECEIDIDPEDDEI 122

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP- 181
                  +                 K    I + +++ ++ +I   + ++  + + PK  
Sbjct: 123 IIENIVPQQQDEK---------LVTKNKYKIYNIVLLFASVLIFFGAVFYFIHKSIPKRI 173

Query: 182 --FFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239
             + K++  +++I+GC    T   +  L+  +K  T +    + C  +P++Y       P
Sbjct: 174 IDYPKNFTFLSKIDGCSIF-TSTELHNLESQEKVNTFLSGQSLECNNYPYIYLNYTIRHP 232

Query: 240 GMIVMACNKNYNQHEVANCLTLSY 263
            + V++C    N  +  NC T  +
Sbjct: 233 TISVISCEFEVNYSKKNNCRTEIF 256


>UniRef50_B2VGK3 Putative transcriptional regulator n=1 Tax=Erwinia tasmaniensis
           RepID=B2VGK3_ERWT9
          Length = 301

 Score =  151 bits (380), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 109/297 (36%), Gaps = 37/297 (12%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
              +N+ + F P+ +++          V++  AS CL LL+E    +V  Q F+  VW  
Sbjct: 13  KITLNNFLIFEPDKKRITGR---GNPAVISASASLCLELLIENVGLLVTHQQFYDYVWRR 69

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTD-- 119
            G    + TLYQNIS +RR     G     +I T+PR+GF +    ++Q   ++S T   
Sbjct: 70  FGTEPASTTLYQNISALRRALNKAG-LQEDIIRTMPRKGFLLSPQTSVQRESLSSFTPVS 128

Query: 120 ----------------AHTHNAPPAIKVNAGYKESIGGAKNFNNK----------ILKHI 153
                                    ++     +ES  G KNF              LK  
Sbjct: 129 TEPERANTLSAGGNEMPDPSPTDERMRTAQNKQESDSGNKNFLYSALTECHFFPAFLKSK 188

Query: 154 KSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKY 213
           K+  +    F+   +S+++             +       GC      +  DG    D+ 
Sbjct: 189 KTMAVTFMLFLALLFSSFFYIRAGL-NYNDAVFVYSTNYKGCIIF---NNADGWLGKDEV 244

Query: 214 KTRILDSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSY-REVNRD 269
           K  + +  I C    ++Y    K +  +    C    + H   NC +  Y + +N D
Sbjct: 245 KKLVDEMKIKCSTTSYVYLTAFKHADSLSYFDCEHPLSGHVRTNCRSHYYVKNLNND 301


>UniRef50_C4SF84 DNA-binding winged-HTH domains n=1 Tax=Yersinia mollaretii ATCC
           43969 RepID=C4SF84_YERMO
          Length = 276

 Score =  150 bits (378), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 96/269 (35%), Gaps = 12/269 (4%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN N+++      L    N    + LT   S  L LL++     +++    + +WE
Sbjct: 1   MEYIINGNVKYNSSDGTLFCPDNNIDMITLTRVTSELLLLLIKNNGAPLSRDTILSELWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN-SSTD 119
           + G+   +N L   +S++R+     G T  +LI T+P+ GF    DI       + + TD
Sbjct: 61  KRGLTASSNNLNNYVSMLRKALAQCGYT--NLIVTIPKHGFLFEADITEMGEDNHLTRTD 118

Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179
             +       +V+     +I      +   L       + +        +  +  +    
Sbjct: 119 PKSVELTQRHEVDPPLASAISD---HHKTSLSGFFKGRVAVLILFFAVLTLLFSPSIYNY 175

Query: 180 KPFFKDYKTVAEINGCHFNVTEDTI---DGLKEFDKYKTRILDSGINCKKHPWLYF--PL 234
                    +  I+ C   + +DT    D        K  I    + C     +Y+    
Sbjct: 176 FRLQSLRTLLFNIDQCRIYLMDDTTRRLDSSNTISTIKMIINTGNLKCDSPANVYYFADK 235

Query: 235 AKSSPGMIVMACNKNYNQHE-VANCLTLS 262
            K S G ++M    +Y  ++    C    
Sbjct: 236 KKDSSGHVIMTDMLSYCPYDIHVPCENYY 264


>UniRef50_A0KHX7 Transcriptional regulatory protein, C terminal n=7
           Tax=Gammaproteobacteria RepID=A0KHX7_AERHH
          Length = 269

 Score =  149 bits (375), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 85/272 (31%), Gaps = 15/272 (5%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M + IN    +      L    + + +  L+  A+      L     +V++++   +VW+
Sbjct: 1   MRYHINARFIYDATDGSLTQRESVEPDSQLSITANALFYFFLRNTG-IVSREEVLKKVWD 59

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           + G+    + L Q +SI+R+ FR       ++I TV R   +++ ++ I+   I      
Sbjct: 60  DNGLTSSNSNLNQYLSILRKAFRHYDI--DNIIITVSRGYLQLNPEVIIE--PIEHVPAP 115

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                P    V A                        I     +  A         N  +
Sbjct: 116 SIEIVPSPSTVAAAEPAFDPAEWPLPLTPRSRGICWYIAGGCMLAFALMLLAFGLLNGRE 175

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEF---DKYKTRILDSGINCKKHPWLYFPLAKS 237
           P       +   + C    +++ +  +      + ++       I+CK      F     
Sbjct: 176 PRPVTLTGIPN-SQCELLASDEMLRSVSATTYGEHFEQVRQRLNISCKPGERFLFFYGDR 234

Query: 238 SP-----GMIVMACNKNYNQHEVANCLTLSYR 264
                   + +  C  + +    + C    Y 
Sbjct: 235 LETNGLGRVFLAHCAMHEDN-PFSYCDNYFYY 265


>UniRef50_C4T6D4 DNA-binding winged-HTH domains n=1 Tax=Yersinia intermedia ATCC
           29909 RepID=C4T6D4_YERIN
          Length = 290

 Score =  148 bits (374), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 95/284 (33%), Gaps = 25/284 (8%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +I+N  I F P  + L+ +++ +  V L+ PASR L   ++   + + +      VWE
Sbjct: 1   MKYILNLTIVFNPSEKILMELNDEERAVTLSNPASRLLLEFIKHQNEPIERDVLLKNVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           + G     + L   +S +R+   A G+    +I T+P+ GF+    I         + D 
Sbjct: 61  DYGFTASNSNLNAYVSELRKALAAFGEDPQ-IITTIPKYGFQFTARIESVLSPTLPAPDN 119

Query: 121 HTHNAPP--------AIKVNAGYKESIGGAKNFNNKILKHIKSHLIML--------SAFV 164
                          +  +                +++   + +L ML            
Sbjct: 120 GKEQDDDIAADTKEISTTIQPDTAPPHPPIAPLPQEVMAPGRKYLTMLRSKILLILVILS 179

Query: 165 IGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTRILDSGI 222
           + A +     N         +Y    EI+ C   + ++     G +  D  +  +    +
Sbjct: 180 VLATALKIYANWADVTIGKANYLLAGEIDQCQIFIQKNVAFPSGTETLDMARHDLRQRKV 239

Query: 223 NCKKHPWLYFPL-----AKSSPGMIVMACNKNYNQHEVANCLTL 261
           +C       F        K +    +  C  +        C T+
Sbjct: 240 DCSVEKHSIFYTKGSDGYKINQLTFIGICAVDEQGR-YNECQTI 282


>UniRef50_C1MDX4 Putative uncharacterized protein n=1 Tax=Citrobacter sp. 30_2
           RepID=C1MDX4_9ENTR
          Length = 251

 Score =  148 bits (373), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/260 (20%), Positives = 94/260 (36%), Gaps = 20/260 (7%)

Query: 9   IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68
           +EF P+ + L++       + L  PAS C   L+    D+V+Q    T  W E      T
Sbjct: 2   VEFNPDSKSLVNRQT-GRAIQLQLPASLCFLYLITHASDIVSQNTLMTIGWGERNNVTTT 60

Query: 69  NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPA 128
           NT YQ I  +R     VG      + T+ RRG +++ +  ++   +       +  +PP 
Sbjct: 61  NTFYQAILTLRNALADVG-LPRDTVKTISRRGLRLNENTQVETITLQ-----QSEVSPPP 114

Query: 129 IKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL-WNNNQPKPFFKDY- 186
           +       + I        +    I    ++ SA V+ A    WL W   +P   F  + 
Sbjct: 115 VIEEIPPAKIIPSTPQQTTQ----IPWFEVLFSASVVIATLIIWLVWYQTRPVMPFSKFV 170

Query: 187 ---KTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIV 243
                      C    + +  D    F+  +         C+ +  ++      +  ++ 
Sbjct: 171 QASMQTPSRQNCKIYYSPNEHDQQGYFNLMQLH----PYLCENNKHVFLTGYSKAERIVA 226

Query: 244 MACNKNYNQHEVANCLTLSY 263
             C+K+      A C T  Y
Sbjct: 227 FVCDKDARVDANAFCTTHYY 246


>UniRef50_P15795 Cholera toxin transcriptional activator n=121
           Tax=Gammaproteobacteria RepID=TOXR_VIBCH
          Length = 294

 Score =  148 bits (373), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 42/224 (18%), Positives = 88/224 (39%), Gaps = 5/224 (2%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            +I+ +   F P    LI   +++  + L +  SR L LL +   +V+++ D    VW E
Sbjct: 19  KFILAEKFTFDPLSNTLIDKEDSEEIIRLGSNESRILWLLAQRPNEVISRNDLHDFVWRE 78

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN-IQNHVINSSTDA 120
           +G  V  ++L Q IS +R+  +    +    + TVP+RG+++   +  ++  +   S  A
Sbjct: 79  QGFEVDDSSLTQAISTLRKMLKDSTKSPQ-YVKTVPKRGYQLIARVETVEEEMARESEAA 137

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSA---FVIGAYSAYWLWNNN 177
           H  + P ++   A        A   N     ++ ++    +     +I       L    
Sbjct: 138 HDISQPESVNEYAESSSVPSSATVVNTPQPANVVTNKSAPNLGNRLLILIAVLLPLAVLL 197

Query: 178 QPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221
              P    +K +  ++G   N+  +  D        +  +    
Sbjct: 198 LTNPSQTSFKPLTVVDGVAVNMPNNHPDLSNWLPSIELCVKKYN 241


>UniRef50_B5FBZ3 Toxin transcriptional activator ToxR n=3 Tax=Vibrio fischeri
           RepID=B5FBZ3_VIBFM
          Length = 293

 Score =  144 bits (364), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 83/248 (33%), Gaps = 37/248 (14%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
             II D   F P    LI   N D  + L    SR LSLL++    VV++ +    VW +
Sbjct: 7   KIIIGDRFLFDPNDNSLIDTLNDDEIIRLGGNESRVLSLLIQEPGKVVSRHELHEYVWRD 66

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN------ 115
           +G  V  ++L Q IS +R+  +         + TVP+RG++  +    Q           
Sbjct: 67  QGFEVDDSSLTQAISTLRKMLQDPTKLP-VYVKTVPKRGYQFISTAVAQVDPDQKIEAET 125

Query: 116 -------------SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSH--LIML 160
                        ++T  H  +A  A  V      +I      N+    H+     ++++
Sbjct: 126 EHNVENTPLNDSLNNTSVHQDDAQEAQTVAPQQNATIHQPSTANSAPQAHLSLLGTIMLI 185

Query: 161 SAFVIGAYSAYWLWNNNQPKPFFKDYKTV---------------AEINGCHFNVTEDTID 205
            AFV+   +       +       +Y                    I  C         D
Sbjct: 186 IAFVLPILAYVNHTPKSDAFVQVANYDNTPVFVPVNHPSIEQWKPLIEQCTNFYNSKHTD 245

Query: 206 GLKEFDKY 213
            LK  +  
Sbjct: 246 SLKPIEVI 253


>UniRef50_C7BJK4 Putative membrane protein n=1 Tax=Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949 RepID=C7BJK4_PHOAA
          Length = 312

 Score =  144 bits (363), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 113/281 (40%), Gaps = 22/281 (7%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++IN  + F P+ + L   +N    V L+ PASR    L++   + + ++D    VWE
Sbjct: 26  MKYVINIIVVFDPKEKTLALFNNPLNTVKLSNPASRLFLELIKNNGETIPREDLLKNVWE 85

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI----------- 109
           + G     + L   IS IR+    +  T  ++I T+P+ GF++  DI +           
Sbjct: 86  DYGFTGSNSNLNSYISEIRKNLACL-STDLTVIKTIPKVGFRLEADIQVSLQESPEEENN 144

Query: 110 -QNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY 168
               +I S +D ++ +     +V     E+    ++ NN + K +K+ + +   F+    
Sbjct: 145 ADTDIIISESDINSLHRKDRPRVEDLEGENRVLKEHRNNHVNKWLKARIFLGIVFIFLLL 204

Query: 169 SAYWLWNNNQP-KPFFKDYKTVAEINGCHFNVTEDT--IDGLKEFDKYKTRILDSGINCK 225
           S Y  + + +  +   + Y  + +   C     +           +  +  I +  I+C+
Sbjct: 205 SFYVFYLSKRTVEISQEHYSYLYKTGKCKVFSLDYKLGYSKATLREMAEQDISNEKIDCQ 264

Query: 226 KHPWLYF-----PLAKSSPGMIVMACNKNYNQHEVANCLTL 261
                 F     P    +    +  C+   +     +CL++
Sbjct: 265 SVKQSIFHRRIMPENNIAKTYFIGVCSIAPSGK-YNHCLSI 304


>UniRef50_Q2NSQ9 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str.
           'morsitans' RepID=Q2NSQ9_SODGM
          Length = 270

 Score =  143 bits (360), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 111/279 (39%), Gaps = 27/279 (9%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFP--DVVAQQDFFTRV 58
           M +IIN  + F      L  V +AD +V L+  A R L  L++     + V ++  F  V
Sbjct: 1   MKYIINSTVAFDTTEYLLTLVDDADTSVKLSNSAGRVLEELIQYRGTGEPVTREHLFASV 60

Query: 59  WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118
           W   G++     L Q +S+IR+G  ++G    ++I T+P+RG K+++ + I     +   
Sbjct: 61  WSAHGLQPSNGNLNQQVSLIRKGLTSLGLDASAII-TIPKRGLKLNDQLVISTLEEDVFQ 119

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178
                         A       G KN N  +     + L+++   +    +  +  +++ 
Sbjct: 120 ATCIPAVNEFPMELAPPVMLSRGRKNINGAL-----TLLMVIVTLLTVIMAYIYYEDDDN 174

Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGIN---CKKHPWLYFPLA 235
            K +F       +IN C    T   I GL++ D     +     N   CK +  + F   
Sbjct: 175 QKLYFSS-----QINSCKVY-TFHPIPGLEKEDYRLRIVEAMKGNVEKCKNNYIVIFSKT 228

Query: 236 ---------KSSPGMIVMACNKNYNQHEVANCLTLSYRE 265
                      +    +  C K+ + H ++NCL   +  
Sbjct: 229 LIPDPLIQDNINVRTFMAKCRKDEDDH-ISNCLNFFFYN 266


>UniRef50_D2YQP0 Transmembrane regulatory protein ToxR n=7 Tax=Vibrio
           RepID=D2YQP0_VIBMI
          Length = 280

 Score =  140 bits (353), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 79/225 (35%), Gaps = 9/225 (4%)

Query: 2   YWIINDNIEFWPE-HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
            +I+ +   F P     LI   N++  + L +  SR L LL +   +VV++ D    VW 
Sbjct: 7   KFILAERFTFDPLLSNSLIDKENSEEIIRLGSNESRILWLLAQRPNEVVSRNDLHDFVWR 66

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E+G  V  ++L Q IS +R+  +    +    + TVP+RG+++   +      I +  D 
Sbjct: 67  EQGFEVDDSSLTQAISTLRKMLKDSTKSPQ-YVKTVPKRGYQLITRVETVEEEIQNDMDE 125

Query: 121 HTHNAPPAIKVNAGYKESIG----GAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNN 176
            TH         +    S                K   S    L   +        ++  
Sbjct: 126 VTHQETGIDFSESTNSTSSSNLGQTTATPQKVTSKATNSWGTRLILLIAMLIPLAVVYLT 185

Query: 177 NQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221
           N  +  FK       ++    N+  +  D        +  +    
Sbjct: 186 NPSESKFKPLTV---VDDVAVNMPINHPDLSNWLPSIELCVKKYN 227


>UniRef50_A8GBW4 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568
           RepID=A8GBW4_SERP5
          Length = 279

 Score =  140 bits (352), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 14/207 (6%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M + +ND+I F  +   L     +D  + ++ P+ R L LL+    + V ++  F +VW+
Sbjct: 1   MKYRLNDHIIFDVDTGTLSLTELSDDPISISNPSKRLLLLLITHHGEAVGREVIFKKVWD 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS--T 118
           + GM    N L Q +S +RR  + +G     +IATVP+ GF +  +I +++     +  T
Sbjct: 61  DYGMVSGNNNLNQCVSKLRRVIKNLGI-EEEVIATVPKVGFMLRYEIIVEHCDGPENSFT 119

Query: 119 DAHTHNAP-----PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL 173
           D  T   P     P I  +AG   S+G      ++    I S + +    ++ A S Y  
Sbjct: 120 DEETSVIPHASVQPEIASSAGKPGSVGTVYAGYSRRWWTIASIVALGVIMLVVAISCYLT 179

Query: 174 WNNNQPKPFFKDYKTVAEINGCHFNVT 200
            + ++ + +      + + N C   ++
Sbjct: 180 GSVSRQEIY------LGKANSCKVFMS 200


>UniRef50_B2D6Y9 ToxR n=2 Tax=Vibrio cholerae RepID=B2D6Y9_VIBCH
          Length = 186

 Score =  137 bits (345), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 64/149 (42%), Gaps = 1/149 (0%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            +I+ +   F P    LI   +++  + L +  SR L LL +   +V+++ D    VW E
Sbjct: 7   KFILAEKFTFDPLSNTLIDKEDSEEIIRLGSNESRILWLLAQRPNEVISRNDLHDFVWRE 66

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
           +G  V  ++L Q IS +R+  +    +    + TVP+RG+++   +      +   ++A 
Sbjct: 67  QGFEVDDSSLTQAISTLRKMLKDSTKSPQ-YVKTVPKRGYQLIARVETVEEEMARESEAA 125

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKIL 150
              + P          S+  +    N   
Sbjct: 126 HDISQPECVNEYAESSSVPSSATVVNTPQ 154


>UniRef50_A8GL29 Transcriptional regulator, CadC n=2 Tax=Serratia RepID=A8GL29_SERP5
          Length = 255

 Score =  137 bits (344), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 41/265 (15%), Positives = 89/265 (33%), Gaps = 12/265 (4%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++IN  I++      L ++ +    ++L  PA R LS+ +     ++ ++     VWE
Sbjct: 1   MIFVINKTIKYNEYEGTLENIDDPGNTILLVKPACRLLSIFVRNNDMLIKRKQLLDEVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           + G++   + L   IS +RR           LI T PR+GFK      I   ++    +A
Sbjct: 61  DYGLKATDSNLNNYISGLRRSLAKFD--EEELIITYPRQGFKF-----IAKKIVRQEANA 113

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                   +++         G K    +    +K   +   A +       +  +    +
Sbjct: 114 ILSETDSVVELEKKESIRPDGPKEGQRRAYSWLKKTALQKMAVITVILLLPFFLSMAYKQ 173

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240
               +   + +   C     +          K    ++ +  +C+    +Y+        
Sbjct: 174 IPISNITNLGQYKNCDIYSIKYN----GMQPKEIEHVISNRYSCEDKANVYYYFNIKEKS 229

Query: 241 MIVMACNKNYNQ-HEVANCLTLSYR 264
           +   A    Y       +C     +
Sbjct: 230 VSSHASLIAYCPLDVTTSCEISYIK 254


>UniRef50_A8GJD8 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568
           RepID=A8GJD8_SERP5
          Length = 267

 Score =  136 bits (343), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 101/274 (36%), Gaps = 22/274 (8%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN  +++      LI   N+   + LT  A+  L L +      + + D    +W 
Sbjct: 1   MEFIINRVLKYNSSDGTLICPDNSVDMITLTRVANELLFLFINNNHISLRRDDILNELWG 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ--NHVINSST 118
           + G+   +N L   +S++RR     G     LI T+P+ GF    D+ +   N +   + 
Sbjct: 61  KRGLSASSNNLNNYVSMLRRALEQCGFAG--LITTIPKYGFIFEADVVVVATNALSEDTD 118

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178
               + A  ++  N   K+     + F++  LK     ++++          Y+   +N+
Sbjct: 119 QTDENEALASLVFNNEEKKINPKVRYFSSVTLKTAFVFMVIIMMLFSSQIYDYFYLKSNR 178

Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKY---KTRILDSGINCKKHPWLYF--- 232
            + F         +  C F + +D I G  E D     K       INC     +Y+   
Sbjct: 179 TEVFS--------MGKCTFYLIDDKIGGRVEEDVIHNMKVAAKKEKINCDVKSNVYYVSE 230

Query: 233 ----PLAKSSPGMIVMACNKNYNQHEVANCLTLS 262
                L K      +M C            +++ 
Sbjct: 231 ALLDSLGKKYVSRSLMYCPYGNKLPCENYHISIY 264


>UniRef50_C4SV61 Putative uncharacterized protein n=1 Tax=Yersinia frederiksenii
           ATCC 33641 RepID=C4SV61_YERFR
          Length = 258

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 98/262 (37%), Gaps = 19/262 (7%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++IN ++ F+P    + S+      V L +P ++ L   +      ++Q + +   W E+
Sbjct: 9   YVINGDVIFYPGSGIVSSLLT-GNTVKLNSPTAQLLEAFVSRVGITISQSELYNIAWGEK 67

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
           G  V  NTLYQNIS++R+  + VG T  S + TV  +GF       I+N   N      +
Sbjct: 68  GSSVTPNTLYQNISLLRKALKDVGVTGES-VTTVRGKGFIFTMATVIENMTDNEIVKNIS 126

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
                                    K    I   +IM   F++     +           
Sbjct: 127 LECNDNKT-----------------KKKMIIVYSIIMGGCFILILLYFFIKSQPGYFVAR 169

Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMI 242
             D  + + IN   F   +++ D           +  +  +C+ +P+LY  L++    + 
Sbjct: 170 KSDGFSFSHINEKCFIYYDNSNDMNSIIPDIDVFLEGTLSSCQVYPYLYISLSELHSTIS 229

Query: 243 VMACNKNYNQHEVANCLTLSYR 264
           + +C      +    C T  + 
Sbjct: 230 LTSCKNEIINNSKNVCKTELFY 251


>UniRef50_Q9RHQ9 Transmembrane regulatory protein ToxR n=2 Tax=Grimontia hollisae
           RepID=Q9RHQ9_VIBHO
          Length = 292

 Score =  134 bits (336), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 81/233 (34%), Gaps = 15/233 (6%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            +++ +   F P    LI ++  D  + L +   R L +L+E    +V +      VW +
Sbjct: 7   RYLLGERFVFSPSDSSLIDLYENDDLIRLGSNECRVLMVLIEEPHAIVTRNRIHDFVWRK 66

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA- 120
           +G  V  ++L Q+IS +R+  +    +    + TVP+RG+++   + + N       +  
Sbjct: 67  QGFEVDDSSLTQSISTLRKSLKDSTKSPM-FVKTVPKRGYQVVCSVEVYNEQEVELPEPA 125

Query: 121 -----HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLS--------AFVIGA 167
                 T        ++    +++        +    + ++    +        A V+  
Sbjct: 126 ASVIDETAAKTEPELLSDNTAQTLPLPDAVAEQTEPKVSTNATAPAKMPLGSWVALVLTL 185

Query: 168 YSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDS 220
                    + P P  + ++ +  I      +        +     +  +   
Sbjct: 186 LVPLAFQIASNPNPKSEAFREILTIENVPVYIPVTNARISQWQPMVQRCVEKY 238


>UniRef50_C4T4W9 DNA-binding winged-HTH domains n=1 Tax=Yersinia intermedia ATCC
           29909 RepID=C4T4W9_YERIN
          Length = 290

 Score =  134 bits (336), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 108/287 (37%), Gaps = 27/287 (9%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++IN  I F P  +KL+ +++ D+ V+L+ PA+R L   ++     + +      +WE
Sbjct: 1   MKYLINYTIFFKPSEKKLMILNDEDIFVILSNPATRLLLEFIKHRNKAIDRITLLKDIWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           + G     + L   +S +R+ F+A+G++   +I T+P+ GF+    +  Q        D 
Sbjct: 61  DYGFTASNSNLNTYVSELRKAFKALGESPQ-VILTIPKHGFQFVAHVESQMKDERQENDC 119

Query: 121 HTHNA----------------PPAIKVNAGYKESIGGAKNFNN--KILKHIKSHLIMLSA 162
                                    K        I G +N ++  + ++     L++L  
Sbjct: 120 LIDTQDISDEKVKNLNFKREFNRDEKQPDIDVTPITGKENIDSNAEKMEFSAKILLILVI 179

Query: 163 FVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTRILDS 220
           F +   +    ++  +     K +    +I  C   V +++      +  +  K  +   
Sbjct: 180 FTVTITAFKIYYSCAEIIINKKSHVLAGKIGKCMLYVKKNSTYPPADQLINLVKNDLQQD 239

Query: 221 GINCK--KHPWLYFPLAKSSP---GMIVMACNKNYNQHEVANCLTLS 262
            I+CK   +   Y              +  C K        +C T+S
Sbjct: 240 EIDCKNDNNEIFYLKGNNDHKFNQLTFIGICAKKEGSDS-TSCRTIS 285


>UniRef50_C2LLY1 Regulatory protein n=9 Tax=Enterobacteriaceae RepID=C2LLY1_PROMI
          Length = 295

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 49/290 (16%), Positives = 98/290 (33%), Gaps = 34/290 (11%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M + IN +I +      + S+   D++  L+  A+  L   ++    VV + +   RVW+
Sbjct: 10  MKYRINASIYYDATDGAI-SLEKGDVDTHLSITANALLFYFIQNPG-VVNRDEVLKRVWD 67

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN----- 115
           + G+    + L Q +S++R+ FR  G    ++I T+ +   + + DI+++    +     
Sbjct: 68  DNGLVSSNSNLNQYLSLLRKTFRHYGI--ENIIVTIAKGRLEFNPDISVELIDDSTLLPV 125

Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILK-------------HIKSHLIMLSA 162
           + T+ H   A  +   +           N ++++ K                    +   
Sbjct: 126 TQTNEHEGEANKSNIASPIETSLSSEPDNLDSELEKEPQLSVTSPQKPEICWYLASIGFL 185

Query: 163 FVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTR---ILD 219
           F           N +Q KP      T    N C     E  I+     +  +        
Sbjct: 186 FGAIFLVVIIFLNQHQSKPIT---LTPLTHNDCELLSNEAMINSSVSDNYIRNFDAVRKK 242

Query: 220 SGINCKKHPWLYFPLAKSSP-----GMIVMACNKNYNQHEVANCLTLSYR 264
             + C K     F             + +  C KN +    + C    Y 
Sbjct: 243 LNLQCVKGERFVFFYGDKLQTNGLGRVFLAHCAKNEDN-PFSYCDNYFYY 291


>UniRef50_C9PH99 Putative uncharacterized protein n=1 Tax=Vibrio furnissii CIP
           102972 RepID=C9PH99_VIBFU
          Length = 262

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/273 (16%), Positives = 94/273 (34%), Gaps = 29/273 (10%)

Query: 1   MYWIINDNIEFWPEHRKL--ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRV 58
           M  ++N  + +      L      +   ++ LT  A+R L LL +     + +       
Sbjct: 1   MKLLLNHTVIYNSSDGTLKLSDAESDHESLTLTPTANRLLELLSKHHGTPMERDVLLMEG 60

Query: 59  WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118
           W++ G++   ++L Q IS +R+           +I T+P+ GF ++N+  I+N       
Sbjct: 61  WDKFGLKGSYSSLNQYISQLRKTLHKFTGV-DDIILTIPKVGFMLNNEFPIKNMDPEPIA 119

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178
            + +       K +   K+ +   K     +   +   L+  +  +              
Sbjct: 120 VSEST-----AKAHHAPKKKVTFKKYLYPFLYTSLFGVLVTGTTII-------------- 160

Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDK--YKTRILDSGINCKKHPWLYF---- 232
            K F++D   + +I  C         D    F     K  +    I+C K   ++F    
Sbjct: 161 SKKFYQDAYHIGKIEQCDVYNFRKRSDEGIAFQLSILKEEMQKLNIHCGKTEKVFFHSQN 220

Query: 233 PLAKSSPGMIVMACNKNYNQHEVANCLTLSYRE 265
            L     G +  +     +    A C    Y +
Sbjct: 221 SLFYGHSGRLFFSKCFLVDGKFSA-CENYYYYQ 252


>UniRef50_A8AP73 Putative uncharacterized protein n=1 Tax=Citrobacter koseri ATCC
           BAA-895 RepID=A8AP73_CITK8
          Length = 233

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 41/237 (17%), Positives = 77/237 (32%), Gaps = 12/237 (5%)

Query: 26  LNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAV 85
             V L +PAS  L  L++    VV+Q    T  W E+      NT YQ I I+R     +
Sbjct: 3   KTVTLQSPASLILLYLIQHNNTVVSQNQLITAGWGEKNHVTSANTFYQTILILRNALSDI 62

Query: 86  GDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNF 145
           G     LI T+ RRG  I  +I        +S                       G    
Sbjct: 63  G-LPRDLIKTIARRGMMISANIQTDEITAKASAIEAPAQIVEPQMEPK-------GDTPI 114

Query: 146 NNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTID 205
             + L    +   +    V+ + +A   + + +      +       + C      + + 
Sbjct: 115 KKRHLSRPAALCGLALLVVMISIAASLFYMSPESLLSSYEVLDSETFSSCTVLQKGNDV- 173

Query: 206 GLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLS 262
                  Y   +      C  + +++     S+  +  + C ++  ++    C+T  
Sbjct: 174 ---LEKNYIRFMHKHREICDNNNYVFLSGMSSAKNITAIICPEDARENPSVKCITYY 227


>UniRef50_Q1Z5R8 Transcription activator ToxR n=4 Tax=Photobacterium
           RepID=Q1Z5R8_PHOPR
          Length = 291

 Score =  130 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 3/151 (1%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            ++I     F P    LI  H +D    L +  SR L LL+E    ++ +      VW E
Sbjct: 7   KYLIGQRFLFDPYDNSLIDQHESDELTRLGSNESRALGLLIEDPGAIITRNRLHDYVWRE 66

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS--TD 119
           +G  V  ++L Q IS +R+  +    +    I TVP+RG+++   +   +   +++  T 
Sbjct: 67  QGFEVDDSSLTQAISTLRKALKDSTKSP-DFIKTVPKRGYQMIAPVEEYSSEASNTEHTV 125

Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKIL 150
           A T ++P +   N  +++ +  +      + 
Sbjct: 126 AETPDSPDSADENNHHQDGVRHSATAIAHVS 156


>UniRef50_B2VDV6 Putative transcriptional regulatory protein n=1 Tax=Erwinia
           tasmaniensis RepID=B2VDV6_ERWT9
          Length = 266

 Score =  130 bits (327), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 95/267 (35%), Gaps = 13/267 (4%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           II DN+       +++S       V+L   A RC   L +A   V++Q+      W   G
Sbjct: 5   IIIDNLLMLDGRTRMLSRIPDGKGVMLPASACRCFIALAQAKEQVLSQEQLMDVGWRHSG 64

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
           + V  N++   I+ IRR   A+       +  V R G+++     I        T   T 
Sbjct: 65  VEVTDNSVRVMITKIRRALIALEVNDSVQLIAVTRSGYRL-----IVRTEQPDITRRTTS 119

Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFF 183
            + P + V+ G       A   +  + + + +    L      A +  WL         +
Sbjct: 120 ASNP-LHVSTGLVSRHVSAYRAHRFLRRRLAAGAAGLVLGSCLAAAVSWLLAIKPTPINY 178

Query: 184 KDYKTVAEINGCHFNV----TEDTIDGLKEFDKYKTRILDSG--INCKKHPWLYFPLAKS 237
             +            V    + D    ++    Y+   ++    IN +   +LY     +
Sbjct: 179 VRWHGAETPPQTEVWVPGNISPDKQRVVQTLQLYRQYAINKNGDINPEHARYLYITTGGA 238

Query: 238 SPGMIVMACNKNYNQHEVANCLTLSYR 264
           SP + ++AC          NC + S++
Sbjct: 239 SPDLGLIACVAPLR-DSENNCESYSFK 264


>UniRef50_C4UHM9 Transcriptional regulatory protein, C n=1 Tax=Yersinia ruckeri ATCC
           29473 RepID=C4UHM9_YERRU
          Length = 300

 Score =  130 bits (327), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 71/299 (23%), Positives = 123/299 (41%), Gaps = 41/299 (13%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
             I N+ + +      L +++N    V LTTPA+ CL ++     +VV+Q+ FFT VWE 
Sbjct: 4   KIIFNNKVVYDHAIAALYNINNKSEMVFLTTPANHCLLIITNNRHEVVSQRTFFTEVWEN 63

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA- 120
            G  + +NT YQNISIIRR F+ +G T   +I TVPRRG +I ++I I +    S     
Sbjct: 64  HGAPINSNTFYQNISIIRRAFKQLGLT-EDVIVTVPRRGVRIGSNIEISSFPPISGQTPE 122

Query: 121 -------HTHNAPPAIKVNAGYKESIGGAKN-------------------FNNKILKHIK 154
                   +         +  Y+E +    +                    N+  L+ +K
Sbjct: 123 SMVLIAKESAEVSKQDNEDTQYQEDVKNFTHNHSDNRIVEERGDFYYSGSNNSSFLRLVK 182

Query: 155 S----------HLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTI 204
           +           +I      I A+SA    +    K  F DYK+   +  C         
Sbjct: 183 TIPSIWDVNYHIVIAFIFLAIMAFSASVFDSYFYSKSRFYDYKSSFLLEQCDVFSQISRD 242

Query: 205 DGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSY 263
             ++     +  I  + I+C++   +YF    + P + ++ C+ +  +     C +  +
Sbjct: 243 --IEIRKSVEHMIKINNISCQEPKRVYFSSFPALPRLSLIVCDGDILKSG-TYCNSYYH 298


>UniRef50_D0XFV2 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3
           RepID=D0XFV2_VIBHA
          Length = 277

 Score =  129 bits (325), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 81/245 (33%), Gaps = 10/245 (4%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M+ I   N+   P  RKL +    D  V L     + L+LL+E     V ++  F   W+
Sbjct: 1   MHRIYFANLILDPTTRKLSNSDGDD--VPLRPLPYQVLNLLIEKQGVHVTREALFESCWD 58

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
             G  V    L   IS +R+    +       I TV + G+ +  ++N     I    + 
Sbjct: 59  --GSVVTDQALTNVISGLRKKLAQLNAQGVQ-IKTVSKIGYLL--EVNADVKPIKQKVEI 113

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                     V++  K +        +K        +     F I +   +  +  +   
Sbjct: 114 PELQTLEIDDVDSQVKAAPKQEAESRDKAFSVAPILMAAFLLFAIASVLYFRPFAPHPDF 173

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240
               DY+    ++   F   +   D L      K+   +    C     +Y  +++S+  
Sbjct: 174 LDDSDYQH-FSVSETDFYFYDQNHDELDLSALAKSLNDEVFPVC--PAIVYLRVSESAYK 230

Query: 241 MIVMA 245
                
Sbjct: 231 EGAHI 235


>UniRef50_D2TQU5 Putative transcriptional regulator n=2 Tax=Enterobacteriaceae
           RepID=D2TQU5_CITRO
          Length = 242

 Score =  128 bits (321), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 95/268 (35%), Gaps = 27/268 (10%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M + I   I F  E   L+++   D  + L+  ++R L+ LL    D++++ + F  V++
Sbjct: 1   MRFDIEGFITFDTEDASLVNLLTGDC-IELSQTSTRLLAELLNHRGDILSRNEIFQSVFD 59

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           + G R   + L Q IS +RR    +G     +I TVPR GFKI  D  + N     +   
Sbjct: 60  KYGARASNSNLNQYISTLRRNLSDLGVK-KEIIVTVPRIGFKISEDAIVNNDREYRTPFL 118

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
              +A  ++                 +         + +  AF++               
Sbjct: 119 DEKDASLSLSAQT-------------SPFHHLFTRIIALTIAFLLLMMKPGVYRPEADIH 165

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240
              K +  +          +   +D  + FD           +C K   LY    +   G
Sbjct: 166 KIVKGHCVIF------IPASLSLMDVKRSFDLTAQ-----PFDCSKAKELYIYR-QQVQG 213

Query: 241 MIVMACNKNYNQHEVANCLTLSYREVNR 268
            +         + +   C++  YRE N 
Sbjct: 214 TLGNIMQLLLMECDNEGCVSFYYREKNN 241


>UniRef50_D0ZEM9 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202
           RepID=D0ZEM9_EDWTE
          Length = 251

 Score =  127 bits (319), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 92/262 (35%), Gaps = 27/262 (10%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + +N+N+ +  +  +L +  + D  ++L   A+R L LL+      V +   F  VW++ 
Sbjct: 11  YRLNENVLYNEQEAELKATVDGDA-ILLAPSANRLLHLLILNQGIPVTRDTLFKLVWDDH 69

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
           G+R     L Q IS++RR    VG      I T+P+ GF I   I I             
Sbjct: 70  GLRSSNANLNQYISLLRRQLFDVG-LPKDTIVTIPKIGFMIDKTIAIT------------ 116

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
                 +   +   +          K   +     I    F++   + +++  N Q  P 
Sbjct: 117 ------LIQESPPLKLFPEKGKDKTKQKLNTTIISICTGLFLLSFLAIFFVSKNEQQLPK 170

Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMI 242
           FK          C+     +T   L    + K        +C      +        G  
Sbjct: 171 FKFQPITNNTIECNIYSLSNTTTFLSNASELKRLK-----DCNASFDYFIYFNHEQKGRE 225

Query: 243 VMA-CNKN-YNQHEVANCLTLS 262
           +++ C K+  N +    C   S
Sbjct: 226 LISWCKKDPENSNAFIYCKNES 247


>UniRef50_D2T558 Protein rcaC n=3 Tax=Erwinia RepID=D2T558_ERWPY
          Length = 249

 Score =  126 bits (316), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 87/258 (33%), Gaps = 14/258 (5%)

Query: 8   NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
            + F PE+  L    N  +++ +T    RCL  L++     + ++      W + G+ V 
Sbjct: 2   RVYFEPENCIL---SNDKMSIKITLQEGRCLDYLVKNEGKFIRREKLLEECWIKRGVTVS 58

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPP 127
            + + Q++  +RR F   G    +L  T  R+G  +      Q   I   T   +HN   
Sbjct: 59  DSAVRQSLYRLRRAFEDAGLPPSTL-TTQARKGHIL------QEGSIILLTAHASHNCVD 111

Query: 128 AIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYK 187
                   K+            +  +       S FVI   +   L+   Q      +Y 
Sbjct: 112 IESSVPSMKKQGTYRHTHLYSTVTSLLPFAKFASLFVIFFLAG--LYTRQQIMITEVNYH 169

Query: 188 TVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVMACN 247
              E  G  +   ++         K    + +  +N     ++Y      +       CN
Sbjct: 170 QAEEKEGRFYFYRKNQAPYESAASKINYWLDNKLVNASDMKYVYLN-NSWAGNTSFYLCN 228

Query: 248 KNYNQHEVANCLTLSYRE 265
           +       ++C +++ + 
Sbjct: 229 EEIGSEG-SHCTSVTVKG 245


>UniRef50_A3USG7 Cholera toxin transcriptional activator n=1 Tax=Vibrio splendidus
           12B01 RepID=A3USG7_VIBSP
          Length = 239

 Score =  125 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 78/223 (34%), Gaps = 6/223 (2%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            +IIND+I+   E  ++           + +  S  L   +    +V+ +Q    +VW  
Sbjct: 4   EFIINDDIQVNLEESEIHHFKT-GRTYPIGSNESELLKFFISRPNEVITRQVLIEQVWVS 62

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
           +G+ V   +L Q ISI R+        +  +I T   +G++    +        S   + 
Sbjct: 63  KGIYVEDGSLMQTISICRKALED---KSGMIIVTERGKGYRFAGQVTQDKERALSKIQSQ 119

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNK-ILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                   + +                   K   S L +++ FV+ A  +++L++     
Sbjct: 120 PKQETKQPENSKAIDSIATENSTTEKTAATKKTNSVLALIALFVVTAGLSHYLFSYLDRN 179

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGIN 223
              +D      I  C     E T + L     Y+ +     I+
Sbjct: 180 SLGEDLVGQHFI-SCRIESDEFTFNELFNVTLYEYKGRKIIID 221


>UniRef50_C4SZK7 Putative uncharacterized protein n=1 Tax=Yersinia intermedia ATCC
           29909 RepID=C4SZK7_YERIN
          Length = 247

 Score =  124 bits (310), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 20/259 (7%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           IIN  + +   +  + +++  + +V L  P + CL +LL+ +P+V+ Q  FF + WE++G
Sbjct: 6   IINKIVAYDYNNAIIYNINKPEKSVSLYAPTNECLYILLDQYPNVIPQNYFFEQAWEKQG 65

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
           +    N  YQ+IS+IRR F  VG     +I T+PRRG  +  D+ I           H  
Sbjct: 66  LTTTNNNFYQHISMIRRAFEVVGLNG-DIILTLPRRGLSLSKDLEI----------THEE 114

Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFF 183
                 K      E+   A   N+ +     S  +++S  +I  +S       +  +   
Sbjct: 115 KKRQDKKEEIVIDETSNNATINNSMLR---ASLWVVVSILIITLFSILLYNKKSPYEKSI 171

Query: 184 KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIV 243
           ++Y  V +I  CH     +  D        K  I +  INC K   LY+          +
Sbjct: 172 ENYNHVEDIELCHLFSLSEGYD----VSNVKEIIKNEKINCNKVKNLYYTTYPIIKRESL 227

Query: 244 MACNKNYNQHEVANCLTLS 262
           + C  +   +   NC++  
Sbjct: 228 IYC--DVLNNTPKNCISYL 244


>UniRef50_D0YZ11 Transcriptional activator ToxR n=1 Tax=Photobacterium damselae
           subsp. damselae CIP 102761 RepID=D0YZ11_LISDA
          Length = 299

 Score =  123 bits (308), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 1/145 (0%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
              I     F P    LI     +  + L +  SR LSLL++    ++ +      VW E
Sbjct: 7   KHCIGQRFIFDPYDNSLIDTVENNELIRLGSNESRALSLLIDEPGAIITRNRLHDYVWRE 66

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
           +G  V  ++L Q IS +R+  +    +    + TVP+RG+++   +     +  + T   
Sbjct: 67  QGFEVDDSSLTQCISTLRKALKDPTKSPE-YVKTVPKRGYQMIATVEKYVDMPLAITATE 125

Query: 122 THNAPPAIKVNAGYKESIGGAKNFN 146
                 ++  +     ++  A    
Sbjct: 126 HAEDLTSVPEHHYQDSALVTAPQSA 150


>UniRef50_C9QE85 Putative uncharacterized protein n=1 Tax=Vibrio orientalis CIP
           102891 RepID=C9QE85_VIBOR
          Length = 280

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 89/263 (33%), Gaps = 9/263 (3%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M  I   +++   E R L   +     V+L       L  LL       ++++ F + W 
Sbjct: 1   MKAIQFSSLKLECETRTLS--NGFGNKVILRPLPYEVLVFLLL-KGAPASREELFEKCWG 57

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
             G  V    L   IS +RR F  +     + I T+ + G+ +  ++ +   +    T  
Sbjct: 58  --GAVVTDQALTNVISDLRRHFFVLNAKEIN-IQTISKVGYFLDVEVEVIEALEPVQTIE 114

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
            T +      V   ++       N   K   + K+  +++ A +    + +         
Sbjct: 115 DTTDVELNPSVTPSHQSQEM--ANHAPKRDINFKASYLLVFALIAMIAATFIFEPFKPRS 172

Query: 181 PFFKDYKTVAEINGC-HFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSP 239
           PF    + V  ++G   F + + T   + +    +     S  NC    ++    +   P
Sbjct: 173 PFTDLSQYVQLLDGSPTFYLMDGTNGSIDKAFLTEQLGKASLANCSADVYIRVFPSIYEP 232

Query: 240 GMIVMACNKNYNQHEVANCLTLS 262
           G+I M           ++     
Sbjct: 233 GVIAMTVRLKSKTSAHSHVFQHF 255


>UniRef50_A5L3N2 DNA-binding transcriptional activator n=2 Tax=Vibrionales
           RepID=A5L3N2_9GAMM
          Length = 492

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 61/175 (34%), Gaps = 5/175 (2%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
           D   F P   +++    A+  V +    ++ L  L         + +    VW   GM +
Sbjct: 11  DEWLFVPNEGQILF---AERTVTIDKRLTKLLEFLCLNPGQTHTRDELINNVW--SGMIL 65

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126
               + Q +  +R+  +      +S I TVP+RG+K   D+       +   +     A 
Sbjct: 66  SDQVVTQAVFELRKVLKQNSQQHNSYIITVPKRGYKFEADVIQSKIETDQVAEPEPSTAQ 125

Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
           P+    +   + +                 + +L   ++   S Y L++ +   P
Sbjct: 126 PSDPEQSPPADKLPQTDVSEKTKPNKRNLMIGLLLGAIVVMESGYILYSASSSTP 180


>UniRef50_A8GL31 Transcriptional regulator, CadC n=1 Tax=Serratia proteamaculans 568
           RepID=A8GL31_SERP5
          Length = 256

 Score =  118 bits (295), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 89/272 (32%), Gaps = 34/272 (12%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN  I F  +   +  + +    V+LT    R LSLL++    ++ ++   +  W+
Sbjct: 1   MKFIINKRIIFHEDKSTIELLDDTIEPVMLTATLCRVLSLLVKNNDLLLTREFILSSAWD 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E G     + L   IS+IR+ F + G++   +I TVPR+GF       +      +   +
Sbjct: 61  EYGKSSTHSNLNNYISMIRKIFNSFGES--DIIITVPRQGFMFSAG-EVNTVDGETIQGS 117

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
            + ++  A+     +   +         I+      L                      K
Sbjct: 118 VSSDSLAAVVERKWHSAHLIALALMAAAIVMIAAYPLF--------------------NK 157

Query: 181 PFFKDYKTVAEINGCHFNVTEDTI---DGLKEFDKYKTRILDSGINCKKHPWLYFPLAKS 237
                   +  +  C   V            E  K K  I     NC     +Y+  +K 
Sbjct: 158 YNSAKMSEIGRVENCKVEVLTAAHYVKHADDELAKVKPLIEKLKFNCAVPATIYYFNSKM 217

Query: 238 SPGM--------IVMACNKNYNQHEVANCLTL 261
                        +  C  +  +   A C  +
Sbjct: 218 LVSHTGMNNAVSFLSYCPTSSVRGVEAQCENV 249


>UniRef50_A1JPG4 Possible reguatory protein n=5 Tax=Yersinia RepID=A1JPG4_YERE8
          Length = 219

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 47/228 (20%), Positives = 90/228 (39%), Gaps = 12/228 (5%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M  II  +I F P  R L   +     + +    S  LSLL   +PDV++++D   ++W 
Sbjct: 1   MNDIIIGDIIFTPLKRTL---NKGGSVIKIRNKESEVLSLLCFHYPDVLSREDIEKKIWS 57

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E    V  NTL Q IS +R          H L+ T+P++G+ +    N  ++  +  +  
Sbjct: 58  ES--YVTDNTLTQTISNLRHALND---KKHELVTTIPKKGYCLGVKPNFTDNDFSEISSV 112

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                  ++  N    ES+   K   +  +  +   + + ++F + +        N +  
Sbjct: 113 TQTEVLDSLAYNT--TESLSKQKYLASGFIVFMMFCVCLATSFNVTSDYYQIKITNVKNL 170

Query: 181 PFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTRILDSGINCKK 226
           P   +   + + +       E  I     K  +    ++   GI C+K
Sbjct: 171 PLTINIDEIHDKDFLSSYNKEPYIFLKKQKNSEYTVCKLQHGGITCQK 218


>UniRef50_C4SAM2 Possible regulatory protein n=1 Tax=Yersinia mollaretii ATCC 43969
           RepID=C4SAM2_YERMO
          Length = 243

 Score =  116 bits (291), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 48/228 (21%), Positives = 85/228 (37%), Gaps = 12/228 (5%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M  II  NI F P  R +   +     V +    S  LSLL   +P  +++++    +W 
Sbjct: 25  MDEIIIGNIIFTPSKRTI---NKGGAVVKIRNKESEVLSLLCHHYPSSLSREEIEREIWG 81

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E    V  NTL Q IS +R            L+ T+P++G+ I    +  +   NS  D 
Sbjct: 82  ES--YVTDNTLTQTISNLRHALDD---KARELVTTIPKKGYCIGIKPDFTSS--NSLQDL 134

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                   + V       +  + +F+ KI++ I S +    +F + + S     N     
Sbjct: 135 ILTQDDSMVSVKPKSTSLVSKSLSFHYKIIRLIVSIVGFFISFELTSNSHQIKINEVTTL 194

Query: 181 PFFKDYKTVAEINGCHFNVTEDTI--DGLKEFDKYKTRILDSGINCKK 226
           P       V + +       E  I      + +    +  +  + C+K
Sbjct: 195 PILVGLDQVLDKDFLSLYQKEPYIFLKKWSDGEYIICKYNNGELLCEK 242


>UniRef50_Q12IZ6 Transcriptional regulatory protein-like protein n=2 Tax=Shewanella
           RepID=Q12IZ6_SHEDO
          Length = 580

 Score =  116 bits (290), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 40/220 (18%), Positives = 78/220 (35%), Gaps = 8/220 (3%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            +  ND +        L  V +  L V L   + R LS+L EA P +V+Q+    +VW +
Sbjct: 17  RYQFND-LTLNTRLGTL--VRDDKLEVRLPWLSYRLLSVLCEAAPGIVSQEQLLEKVWPD 73

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
             + V   TL Q I ++RR       T    I  +  RG+++   + + + V    T   
Sbjct: 74  --VVVGDETLKQRIKLLRRALNDDAHTP-IYIEAIRGRGYRLLPQVIVTSEVTP--TRMT 128

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
           + +      V     +S        +  L  +     +++ F+    +   L  N     
Sbjct: 129 SLDLANDTHVMPEDGKSYPLFWKLTSLSLAALMLIFALVALFISSGDNLAKLDENAPSSL 188

Query: 182 FFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221
               +     + G  +       D L   + + + +  + 
Sbjct: 189 ASPGFDVELYLKGLDYYHRYREADNLHAIELFTSALAINP 228


>UniRef50_C9NME3 Putative transcriptional activator ToxR n=1 Tax=Vibrio
           coralliilyticus ATCC BAA-450 RepID=C9NME3_9VIBR
          Length = 255

 Score =  116 bits (290), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 81/237 (34%), Gaps = 17/237 (7%)

Query: 9   IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68
           I F     KL +       + +    ++ L LLL+  P+VV + D     W  E   +  
Sbjct: 2   IIFHSVQNKLSNTQ---RVIKIGYREAQVLDLLLKHSPEVVKKHDIVQHAWGSE--YIGE 56

Query: 69  NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPA 128
            +L ++IS +R+    +G      I TVP+ G+++ +  +I+             N  P 
Sbjct: 57  TSLAKSISTLRQALLKLGAKESP-IVTVPKVGYRLVSH-SIEYAPAEPPPQIDKSNPAPN 114

Query: 129 IKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKT 188
           +  +A        + N + K  K    ++  ++     +  A    +  + +    D   
Sbjct: 115 LPTSAASSSQRVTS-NLSLKECKSPLCYVAAIALLFASSILALSKVHGWRWEDIPSDQHL 173

Query: 189 V-AEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVM 244
               +         +T   L      +  +  +  +C     +Y    +    +  +
Sbjct: 174 ARHTVGQLQVFTESETRLSLP----LRQLLSQNQCDC----VVYIEKNERFSELSWL 222


>UniRef50_D1RYQ0 Transcriptional regulator, CadC n=1 Tax=Serratia odorifera 4Rx13
           RepID=D1RYQ0_SEROD
          Length = 258

 Score =  115 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 101/271 (37%), Gaps = 34/271 (12%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN  I F  +   +  + +    V+LT    R LSLL++    ++ ++   +  W+
Sbjct: 1   MKFIINKRIIFHEDKSSIELLDDTIEPVMLTATLCRVLSLLVKNNNLLLTREFLLSNGWD 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           E G     + L   IS+IR+ F + G++   +I TVPR+GF    D        +S +  
Sbjct: 61  EYGKSSSHSNLNNYISMIRKIFNSFGES--EIIVTVPRQGFMFSADEVNTVDGESSLSSV 118

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                 PA  +       +                  ++L+A  I   +AY  ++  QP 
Sbjct: 119 SRDLPAPAAAIKWKPAGLVS-----------------LVLAAMAILMVAAYPFFDRYQPV 161

Query: 181 PFFKDYKTVAEINGCHFNVTEDTI---DGLKEFDKYKTRILDSGINCKKHPWLYFPLAKS 237
                +  + +I+ C   V   +        E +K K  I  +  NCK    +Y+   K 
Sbjct: 162 K----HSEIGKIDHCSVEVLTTSHYVKHTDDELEKIKPLIETARFNCKVPATIYYFNTKM 217

Query: 238 SPGM--------IVMACNKNYNQHEVANCLT 260
                        +  C  +  +   A C  
Sbjct: 218 LVSRAGMNNDISFLSYCPASRLKGVEAQCEN 248


>UniRef50_Q5E5W5 Transcriptional regulatory protein n=2 Tax=Vibrio fischeri
           RepID=Q5E5W5_VIBF1
          Length = 285

 Score =  114 bits (286), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 83/242 (34%), Gaps = 12/242 (4%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M+ II  N+   PE R L +       V+L         LLL+     V++   F   WE
Sbjct: 1   MHKIIIANLVLEPESRTLTNQF--GHKVMLRPLPYEVFRLLLDQQGKSVSRDQLFNVCWE 58

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
             GM V    L   IS +RR    +    +  I TV + G+ +  +  I      +    
Sbjct: 59  --GMVVTDQALTNVISNLRRNLVQL-KAENVTIKTVSKIGYLLAIEQPITIVENTNEIAP 115

Query: 121 HTHNAPPAIKVNAGYKE---SIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177
               + P+   N   K+   +   A     ++L       +    F++       ++   
Sbjct: 116 LKKQSEPSSVANKIKKKEAFNRKTADAILKQLLTKPSVKSVSCCFFLVAMIIVGVVYQRY 175

Query: 178 QPKPFF--KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLA 235
              P F   +      +N   F +   T +     +K K+ I    +  + +  +Y  + 
Sbjct: 176 ISIPHFLVSNNYEHFSVNNTDFYLLNKTKEKTD-IEKIKSGIESLNL-AECNANVYIRMY 233

Query: 236 KS 237
            S
Sbjct: 234 DS 235


>UniRef50_A6AKR5 Transcriptional regulatory protein, C n=3 Tax=Vibrio
           RepID=A6AKR5_VIBHA
          Length = 250

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 93/236 (39%), Gaps = 22/236 (9%)

Query: 10  EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69
            + P    L    N +  + +    S+ L+LLLE  P+VV +QD     W  E   +   
Sbjct: 3   LYNPIKNTL---SNGEKTIKIGYRESQILTLLLERSPEVVKKQDIVQFAWGNE--YIGET 57

Query: 70  TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAI 129
           +L ++IS++R+ F  +G      I TVP+ G+++  D+ +   ++       T NAP   
Sbjct: 58  SLAKSISVLRQSFIKIGIKDSP-ILTVPKVGYRLVEDVLLNECLV-------TINAPREE 109

Query: 130 KVNAGYKESIGGAKNFNNKI-LKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKT 188
            V A  +E+   A     K   +++  +++ LS            ++++   P F     
Sbjct: 110 IVPAKPEETSQPAYAAKQKPGYRNLVCYVVSLSFLFAAVLMVASKYHSSYSHPQFSKLLN 169

Query: 189 VAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVM 244
              +      ++  T   L    + +  + ++   C     +Y        G+  +
Sbjct: 170 EHTVGSLEVYMSPSTSLSL----RVQELLAENQCQC----VVYIEENNGFSGLSWL 217


>UniRef50_D2T5X7 Uncharacterized protein yqeI n=2 Tax=Erwinia pyrifoliae
           RepID=D2T5X7_ERWPY
          Length = 268

 Score =  114 bits (285), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 91/269 (33%), Gaps = 14/269 (5%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
              I D +      R L S  +   +V+L T A RCL+ L +A   V++Q+      W  
Sbjct: 4   NITIGDLVRLDRRTRSL-SRTHDGKSVMLPTAACRCLAALAQAKEQVLSQEQLMDIGWRH 62

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
            G+ V  N++   I+ IRR    +       +  V R G+++     I       +TD  
Sbjct: 63  AGVEVTDNSVRVMITKIRRALVTLKVDERIQLIAVTRSGYRL-----IVRADRPGATDLS 117

Query: 122 THNA-PPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                  A ++               +++ + I +    L           WL   +   
Sbjct: 118 AAKRGVQAARILPAAGGDALPVIAPRSRLQRRIAAGGAGLVLGSCAVAVTGWLLTIDPVP 177

Query: 181 PFFKDYKTVAEINGCHFNV----TEDTIDGLKEFDKYKTRILDSG--INCKKHPWLYFPL 234
             +  +            V      +    ++    Y    L+    IN +   +LY   
Sbjct: 178 VHYIRWYDGKAPPQSEVWVPEKAQPEKQQVIQTLQLYTQFALNKEGDINAEHARYLYITT 237

Query: 235 AKSSPGMIVMACNKNYNQHEVANCLTLSY 263
            KSSP + ++AC          NC + S+
Sbjct: 238 GKSSPHLGLIACVTPLR-DSENNCESYSF 265


>UniRef50_Q15PB9 Lysine decarboxylase transcriptional regulator, CadC n=1
           Tax=Pseudoalteromonas atlantica T6c RepID=Q15PB9_PSEA6
          Length = 756

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 87/227 (38%), Gaps = 10/227 (4%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + I D     P ++    + + +    L   A   L+ L +   DVV+Q+D   +VW++ 
Sbjct: 5   YWIGDFFVNLPRNQ----ITHNEHTQTLPPKALAVLTYLAKHQGDVVSQEDLLNQVWKD- 59

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
              V  N+L + I+ +R+ F   G     LI T  ++G+ +   I  ++H   +  D+ T
Sbjct: 60  -TVVSPNSLQRCIAQLRKAFGDDG-KAQGLIKTHAKKGYSLEAAIRWEDHQKRNVGDSVT 117

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
            +  P    +A    +      F+ K +  +    +++ A VI   S   LW ++   P 
Sbjct: 118 LDKSP-PNQHAKLGTNKVVKAGFSAKHIFVLSLFTVLVFALVISITST--LWPSSVHNPS 174

Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPW 229
                 + +I         +         K+        + C  H W
Sbjct: 175 PASPLLIDDIRLLTSTDNRELASAYSPDGKFIVFQRFPEVMCTSHLW 221


>UniRef50_B2VGZ0 Transcriptional regulatory protein n=1 Tax=Erwinia tasmaniensis
           RepID=B2VGZ0_ERWT9
          Length = 190

 Score =  114 bits (284), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 46/182 (25%), Positives = 81/182 (44%), Gaps = 1/182 (0%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           MY+I+N  I+F+P+  +L  ++  D ++VL+ PASR L  L+     VV +      VWE
Sbjct: 7   MYFILNKTIKFYPDTNELAIINEQDNSIVLSKPASRLLLTLINHLNVVVTRDYLLKTVWE 66

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           + G     N LY  IS +R+ F ++     S++ TVP+ G ++   ++      N+    
Sbjct: 67  DYGYTPSNNNLYMAISELRKSFSSLN-GGESILVTVPKVGLRLEALVDALEKGGNAEEKK 125

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
            T        +           K  +   LK      + +S  +I +  A +L+N  +  
Sbjct: 126 ETRTETEIEPLAEEKPGEEEEKKISSIYRLKSNTGVKVKISLALILSSLAIFLFNLEENV 185

Query: 181 PF 182
           P 
Sbjct: 186 PI 187


>UniRef50_D2TAS4 Cholera toxin transcriptional activator n=2 Tax=Erwinia pyrifoliae
           RepID=D2TAS4_ERWPY
          Length = 146

 Score =  113 bits (283), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 61/117 (52%), Gaps = 1/117 (0%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN  + F   +  L    N+D  + L+ P +R L+ L+    +++ ++D   +VWE
Sbjct: 11  MNYIINHYLCFDSSNGLLKLTDNSDSTLQLSRPGTRLLTQLIIHAGEIMTREDLIKKVWE 70

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS 117
           +  +    + L  +IS++R+ F  +  T   +I T+P+ GF++   ++I+      S
Sbjct: 71  DHDLTPSGSNLSNHISLLRKAFSQLAVT-EIMITTIPKVGFRLDAVVSIEKTAHRQS 126


>UniRef50_Q12S47 Transcriptional regulatory protein-like protein n=1 Tax=Shewanella
           denitrificans OS217 RepID=Q12S47_SHEDO
          Length = 762

 Score =  113 bits (282), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 76/248 (30%), Gaps = 28/248 (11%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + I           ++      + + ++   A   L+ L E    VV+       VW  +
Sbjct: 5   YSIGGFFI-DLSRNQIT---QNNQSQIIAPKALAVLTYLAENQGKVVSHDALLENVW--Q 58

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI----NIQNHVINSST 118
           G  V  NTL ++I+ +R+     G      I T  ++G+ +  D+    NI++  +N++ 
Sbjct: 59  GTVVSPNTLQRSIAQLRKALGDDGKV-QVYIKTHAKQGYSLECDVRWHDNIESPPLNAAQ 117

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILK-----------------HIKSHLIMLS 161
           +        +        E    +K  ++   K                  +     +  
Sbjct: 118 ENIVDTPTMSETNALAMSEDNTQSKAQHHSHDKDQSKSATTTDNAKPSKLTVMPLFTLFG 177

Query: 162 AFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221
             ++      +L      K  F + + +   +   F            F +Y      + 
Sbjct: 178 IIILAYIGYQYLMPQPPSKLSFGELRLLTTTDNKEFASIYSPDGQYVVFHRYSAVFCRNN 237

Query: 222 INCKKHPW 229
           I  K    
Sbjct: 238 IWAKNTKT 245


>UniRef50_B6XAC7 Putative uncharacterized protein n=2 Tax=Providencia
           RepID=B6XAC7_9ENTR
          Length = 272

 Score =  113 bits (282), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 46/276 (16%), Positives = 92/276 (33%), Gaps = 16/276 (5%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++IN NI +      L   +  D  + LTT  +R L +L++   +V+ ++   +RVW+
Sbjct: 1   MKYLIN-NIIYDSHQGLLYRDNIDDA-IKLTTTLNRLLLVLVQNNGEVLDRETLLSRVWD 58

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST-D 119
           E       N L  +IS++RR   +       +I T+P+ G K    +   +  +N     
Sbjct: 59  EHNQVASDNNLNSSISVLRRHLSSF--FEEEIITTIPKVGIKFDAKLQSLSTKLNQKPHQ 116

Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179
               N            E+    ++ + K   +I ++  +    V+           +  
Sbjct: 117 EEQPNILLKESEQPSIIENSPKKQSLSVKEKSYILNNRYIELTLVVIIIFCLLYLFKSYF 176

Query: 180 KPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTR---ILDSGINCKKHPWLYFP--- 233
                +Y  V  I+ C                 +      +    I+CKK   L++    
Sbjct: 177 FATRTEYPEVGRIDQCSIRYINSYHKPDMTTINFTDLQNQLTRLNIDCKKPATLFYYNVG 236

Query: 234 -----LAKSSPGMIVMACNKNYNQHEVANCLTLSYR 264
                       + +  C          +C     +
Sbjct: 237 IVTNDKNLYDNFLFLSYCPTTPKDSATVSCENFYVK 272


>UniRef50_Q1IIR6 Transcriptional regulatory protein-like n=1 Tax=Candidatus
           Koribacter versatilis Ellin345 RepID=Q1IIR6_ACIBL
          Length = 469

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 33/190 (17%), Positives = 65/190 (34%), Gaps = 6/190 (3%)

Query: 1   MYWIIN-DNIEFWPEHRKLISVH--NADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTR 57
           M  +I  + + F P    L +         V L       L LL+    ++V + +   R
Sbjct: 1   MTDLIGPNRLRFGPYEADLHTRELWKFGTRVKLVGQPFDILELLISRPGELVTRDELRER 60

Query: 58  VWEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN--IQNHVIN 115
           +W +E      + L   ++ +R       D     I T+PRRG++  + +   ++  +  
Sbjct: 61  LWPKETFVDFNHGLNAAVNKLRDVLCDSADDPK-FIETLPRRGYRFISKVERGVEEPIPV 119

Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWN 175
           + T   T    P     A        A      + +   S        V+ A+ A+   +
Sbjct: 120 AETSPPTPLVVPTPAELAPEPRYESPAITVERSLGRTKWSWGAAALLMVVIAFIAFLAIS 179

Query: 176 NNQPKPFFKD 185
               +P   +
Sbjct: 180 KISREPSESE 189


>UniRef50_B4SI58 Transcriptional regulator domain protein n=3 Tax=Stenotrophomonas
           RepID=B4SI58_STRM5
          Length = 774

 Score =  112 bits (280), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 30/165 (18%), Positives = 64/165 (38%), Gaps = 4/165 (2%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +       R++  V  A   + LT  A   L +L+     VV +++ F  VW +     
Sbjct: 17  GDCVITLSSREVE-VEGARRPLRLTPKALGVLRVLMRQPGRVVTREELFAEVWPD--TLP 73

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN-SSTDAHTHNA 125
             + L Q ++ +R+ F    D   + I T+ + G+++   + + + V      DA     
Sbjct: 74  TNDVLTQAVTQLRKVFANDDDNGQAYIETIAKSGYRLLVPVLVLDDVAPVVEVDAVPEVM 133

Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSA 170
           P     +A    ++  A +  +   +  +  L +L   ++ A   
Sbjct: 134 PALAGASAIPTATVLPAPSRRSGWRQLRRQLLWVLGVLMLAALVV 178


>UniRef50_A6XSQ7 ToxR2 n=9 Tax=Vibrio RepID=A6XSQ7_VIBCH
          Length = 183

 Score =  112 bits (280), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 71/176 (40%), Gaps = 12/176 (6%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            +++ + + F    R++++    D  + L    +  L LL E    V+ +++   +VW +
Sbjct: 4   NYLLGNQVIFDTLKREVLTT---DKIISLGGREASILKLLCENANTVITKEEINDKVWGK 60

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND------INIQNHVIN 115
             + V   +L + IS +R+  + +       I T+P+ G+ +  +      +  ++    
Sbjct: 61  --VFVSETSLTKAISNLRKSLQLIDGVMCE-IKTIPKEGYMLILEGESLGLMVTEDEPPL 117

Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171
                 + +        A ++     +K   N    +IK   ++L+ F     S++
Sbjct: 118 EVKRIESKDLAMIKAPAANHRFLPALSKTEENTHSGYIKPSWLLLAVFSSALISSF 173


>UniRef50_A5L317 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium
           SWAT-3 RepID=A5L317_9GAMM
          Length = 295

 Score =  112 bits (280), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 89/250 (35%), Gaps = 15/250 (6%)

Query: 5   INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64
           I D++    E R L   H AD+ V +     + L  LL+     V++++ F   W  +G+
Sbjct: 7   ITDSVTIDIEIRTLTH-HPADITVSMRPLPFKVLLYLLKHQDRCVSREELFEECW--QGV 63

Query: 65  RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS-------S 117
            V   +L   IS IR+ F+ +      L  T+ ++G+ +      Q   +          
Sbjct: 64  LVTDQSLTNTISYIRKVFKNLDTNELEL-KTISKQGYLLVISPKQQTLKVEEIKPFAEAE 122

Query: 118 TDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177
                 +A   I       +      N   K     +  L + + ++     AY+  + N
Sbjct: 123 VQLELSDAGTGIDEEKIKPDLQQPVSNQKTKSKFPRQFTLNLCALWLGIILVAYYSIHYN 182

Query: 178 QPKPFF--KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLA 235
           + +  F  KD             V + +    +   +  + I +  ++      +Y  + 
Sbjct: 183 KEQAPFLDKDNYQSYPFGSATLYVHDQSNTITEP--EMTSYINNLELSQCNVKSIYIRIT 240

Query: 236 KSSPGMIVMA 245
            S+    +++
Sbjct: 241 NSAFRDNIIS 250


>UniRef50_B2VCE9 Probable transcriptional regulator n=1 Tax=Erwinia tasmaniensis
           RepID=B2VCE9_ERWT9
          Length = 134

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 1/109 (0%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +IIN  I F      L S++N+   V L+ P +R L+ L+    +++ ++D   +VWE
Sbjct: 1   MNYIINKKIYFNSLKGLLNSMNNSVPMVQLSKPGARLLAELIIHSGEIMTREDLIKKVWE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI 109
           +  +    + L  +IS++R+ F  + D T  +I TVP+ GF++  +I+ 
Sbjct: 61  DHNLTPSGSNLSNHISLLRKAFLQL-DMTERIIITVPKVGFRLEAEIDT 108


>UniRef50_B4EUN0 Putative membrane protein n=2 Tax=Proteus mirabilis
           RepID=B4EUN0_PROMH
          Length = 274

 Score =  111 bits (278), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 102/270 (37%), Gaps = 13/270 (4%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++IND+I F+ +   L S        +L    S+ L  L+    ++V Q++ F   W ++
Sbjct: 2   YLINDDIIFYSDKNLLFSKKLNKEKKILAPS-SKMLIHLIT-VNELVTQRELFRIGWGDK 59

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
              +  +  YQNI ++R+ F  +      +I TVPR+G+ I+++I+I+    N+  D   
Sbjct: 60  EKFITNSAFYQNILLLRKAFNELDIDDEIVI-TVPRKGYIINHNISIEKLSDNNIQDIKL 118

Query: 123 HNAPPAIKVNAGYKE-------SIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWN 175
            N      +    KE       +I    +  + I K   S        +I      +   
Sbjct: 119 INENKISDIPHIKKEIEEDINTNINNKDHSLSSIKKTSISLSKKKLFIIIFTLIVLFFVV 178

Query: 176 NNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKT-RILDSGINCKKHPWLYFPL 234
                        +   + C      +     +  ++ K   I +   +   + ++Y   
Sbjct: 179 IFTFNYLDSRKHKLYNYSNCGTYKKYNLFCNKEILNEEKENLIDNYISSYSDYNFIYITE 238

Query: 235 AKSSPGMIVMACNKNYN--QHEVANCLTLS 262
           + S     ++ C K ++        C+++ 
Sbjct: 239 SDSYSRTSLILCKKKFSPINFLHNQCVSIY 268


>UniRef50_Q1YZ13 Transcriptional activator CadC n=1 Tax=Photobacterium profundum
           3TCK RepID=Q1YZ13_PHOPR
          Length = 509

 Score =  111 bits (278), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/228 (15%), Positives = 77/228 (33%), Gaps = 22/228 (9%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            + I DN  F P   K I     + +VV+    S  L  L +      ++ +    VW  
Sbjct: 5   RYKI-DNWIFIPSENKCIL---DERSVVIDNRLSNLLLFLCQHPHQTFSRDELINEVW-- 58

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
            G  +    + Q+I  +R+  ++     H  I T+P+RG+K+  ++ IQ+  +++  +  
Sbjct: 59  NGSFLTDQVITQSIFELRKILKSNQRHPHGYIITIPKRGYKLDAEVEIQDDSLSTEDNNQ 118

Query: 122 THNAPPAI------------KVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYS 169
                 A+            +V           +       +  +  LI     ++ A  
Sbjct: 119 DTENAHALLNTAHTNKEAVREVPQPSSAPSYQKEREAAHQRRSSRGKLIAFCCLLLVATL 178

Query: 170 AYWLWNNNQPKPFFKDYKTVAEIN----GCHFNVTEDTIDGLKEFDKY 213
           A   +    P+      +  + +          +  +T D      + 
Sbjct: 179 ASLFYYVKTPESRATSTRKFSSLEPSVINVSIKIDSNTTDPKTTRIEI 226


>UniRef50_P23890 Transcriptional activator cadC n=99 Tax=Enterobacteriaceae
           RepID=CADC_ECOLI
          Length = 512

 Score =  111 bits (278), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 30/206 (14%), Positives = 68/206 (33%), Gaps = 12/206 (5%)

Query: 17  KLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNIS 76
            +  +      + L       L    +   +V+++ +    VW+     V  + + Q+IS
Sbjct: 16  SINQISRNGRQLTLEPRLIDLLVFFAQHSGEVLSRDELIDNVWKRS--IVTNHVVTQSIS 73

Query: 77  IIRRGFRAVGDTTHSLIATVPRRGFKIHNDI---------NIQNHVINSSTDAHTHNAPP 127
            +R+  +   + +   IATVP+RG+K+   +          I         +A      P
Sbjct: 74  ELRKSLKDNDEDSPVYIATVPKRGYKLMVPVIWYSEEEGEEIMLSSPPPIPEAVPATDSP 133

Query: 128 AIKVNAGYKESIGGAKNFNNK-ILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDY 186
           +  +N     +        +K           +LS  +  A  A+   +   P    +  
Sbjct: 134 SHSLNIQNTATPPEQSPVKSKRFTTFWVWFFFLLSLGICVALVAFSSLDTRLPMSKSRIL 193

Query: 187 KTVAEINGCHFNVTEDTIDGLKEFDK 212
               +I+    N + ++     +   
Sbjct: 194 LNPRDIDINMVNKSCNSWSSPYQLSY 219


>UniRef50_Q21GQ2 Transcriptional regulatory protein-like protein n=1
           Tax=Saccharophagus degradans 2-40 RepID=Q21GQ2_SACD2
          Length = 425

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 70/207 (33%), Gaps = 19/207 (9%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +  ND +E   +  ++     A L V +       +  L+E    +V++ + F ++W+
Sbjct: 1   MSFHFND-VEIDTKQYRITC---AGLTVSVEPKVFDIIVYLIENRNRLVSRDELFEKIWD 56

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
                V   TL  +I   R+     G+     I TV  RG++   ++++           
Sbjct: 57  ARA--VSDTTLSNHIKSARKALGDDGE-QQHTIKTVRGRGYQFIAEVSVSALTDE----- 108

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                 P    ++   E     ++ N    K   + LI     V+      +  +    +
Sbjct: 109 ------PIAASSSAPSERSAPVQSTNRFQPKATIAFLIFGCLCVLTLIGYLYNLSRT-IE 161

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGL 207
           P   +   +        +    TI  +
Sbjct: 162 PQQPNLSPLNPTLSPPLHAQNTTIPYI 188


>UniRef50_Q47YD8 Putative transcriptional regulator n=1 Tax=Colwellia
           psychrerythraea 34H RepID=Q47YD8_COLP3
          Length = 712

 Score =  110 bits (275), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 33/191 (17%), Positives = 69/191 (36%), Gaps = 7/191 (3%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++  ++I    +++ LI       +++L       L    +    ++ + +    VW 
Sbjct: 1   MRYLEFNHITIDTQNQLLIR---DGESIILAPKVYDLLIFFCKNPARIITKDELMDEVW- 56

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
             G  V  N + + +  +R+        +   I TVPR+G+++  + N  +    +  + 
Sbjct: 57  -TGTLVTENAISRTLVKVRKALGD-DPKSPQFIITVPRKGYRMVTEFNGSDKCQYNEQN- 113

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
            T       + N     S     +  NK  K + S   +    +I A S Y+    N   
Sbjct: 114 TTEQTSTNKENNNTITTSFSSVNSTKNKKPKTLFSLFAISCTLLIVAVSFYFSIQQNIEI 173

Query: 181 PFFKDYKTVAE 191
              K  K +  
Sbjct: 174 IATKQLKPLTR 184


>UniRef50_C1M6R9 Predicted protein n=2 Tax=Citrobacter RepID=C1M6R9_9ENTR
          Length = 227

 Score =  110 bits (275), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 77/240 (32%), Gaps = 26/240 (10%)

Query: 29  VLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGDT 88
            L   A++ L  LL+   ++ ++ +    V++  G R     L Q+IS +R+   + G  
Sbjct: 3   TLNNVATQLLLYLLQNGKEISSRDEILRNVFQHNGARATDANLNQHISFLRKAITSTG-H 61

Query: 89  THSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNK 148
              LI T+PR GF++                +        ++ +      +  A     K
Sbjct: 62  PAELIVTIPRIGFRM----------------SDASINIQQLEESQAPTRIVNVALTPRKK 105

Query: 149 ILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLK 208
                   +  L   +    +A+  W  N+            +   C  ++  + +    
Sbjct: 106 KRNLWPVTITTLITGIAVLATAWLTWIPNEIAMTDAAILRTIDYEQCRVHILGNALTDTI 165

Query: 209 EFDKYKTRILDSGI--NCKKHPWLYFPLAKSSPGM----IVMACNKNYNQHEVANCLTLS 262
              K        GI  NC     LY     S+  +        C  N   +   +C++  
Sbjct: 166 TEKKALDIFKSVGINPNCSYPKDLYLNTWASNHNLVEWSFAAECGLNLGYY---HCISQY 222


>UniRef50_C9PHD6 Transcriptional activator ToxR n=1 Tax=Vibrio furnissii CIP 102972
           RepID=C9PHD6_VIBFU
          Length = 203

 Score =  110 bits (275), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 30/149 (20%), Positives = 58/149 (38%), Gaps = 3/149 (2%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
             +IN    F    + L   +  D  +++    SR L+LL      V++++D + +VW E
Sbjct: 7   KVVINSRFLFDAVEKSLTDAY--DEKIIIGDNESRILTLLTSHPNAVLSREDIYQQVWVE 64

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
            G +V  ++L Q+IS++R+            I T  R G++    ++    VI       
Sbjct: 65  RGNKVDDSSLTQSISLLRKVLGDKATNPE-YIKTEARIGYRFIAPVDPVYSVIPLEELVE 123

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKIL 150
                     N     +    +  N++  
Sbjct: 124 VTEQNVQPAANTRQTPAYPEQRYINSEFR 152


>UniRef50_D0YIE0 Transcriptional regulator, CadC n=6 Tax=Klebsiella
           RepID=D0YIE0_KLEVA
          Length = 224

 Score =  110 bits (274), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           +IN  + F     +L  +      V L  P +RCL LLL+    V+++ +F   VWE  G
Sbjct: 21  MINHEVIFNANMNELRPLSGDGECVSLNAPTARCLLLLLQNSGKVISRDEFLAAVWETRG 80

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS 116
           + V  NT YQNIS++R+     G +   +I TV ++GF +  D  I       
Sbjct: 81  VVVSQNTFYQNISLLRKSLLKAGLSA-DIIITVRQKGFSVAPDTLIIPLSDEE 132


>UniRef50_B1KKU4 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC
           51908 RepID=B1KKU4_SHEWM
          Length = 711

 Score =  110 bits (274), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 13/220 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +        +L        +  L   A   L+ L +    VV+Q +  + VW      V
Sbjct: 8   GDFFVDLSRNQLT---QKQQSQTLPPKALAVLTCLAKNKASVVSQDELLSHVWPNS--VV 62

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126
             NTL + I+ +R+     G      I T  ++G+ +  D++ Q    N++         
Sbjct: 63  APNTLQRCIAQLRKALGDDGKVQR-YIKTHAKQGYSLEVDVHWQQPEPNNA-------NK 114

Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDY 186
            +  +       +  + +  +K +  + S +I L   V G     +           K  
Sbjct: 115 DSSPLPTTLAVQVEDSPHQPSKTVSRLISAVIALLIIVFGVIGYQFFPLTASTPLVVKSM 174

Query: 187 KTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKK 226
           + +   +                F +Y   +  S +  K 
Sbjct: 175 QPLTSTDNRELASIYSPDGEYVIFMRYPEVLCTSHLWAKN 214


>UniRef50_D0XI00 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3
           RepID=D0XI00_VIBHA
          Length = 267

 Score =  110 bits (274), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 38/239 (15%), Positives = 84/239 (35%), Gaps = 21/239 (8%)

Query: 6   NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65
           N  I + P    L    N++  V +    S+ L+LLLE  P VV ++D     W  E   
Sbjct: 17  NRMILYNPIKNTL---SNSNKTVKIGYRESQILTLLLEHSPAVVEKRDIVQFAWGNE--Y 71

Query: 66  VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125
           +   +L ++IS++R+ F  VG      I TVP+ G+++   + +   ++           
Sbjct: 72  IGETSLAKSISVLRQTFTKVGMKESP-IVTVPKVGYRLVEGVLLNECLV-------AATP 123

Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKD 185
           P         ++      N +    K++  +++ L      +  +   +++    P    
Sbjct: 124 PDEKVQQKSVQQPTPPLPNKHETNYKNLACYIVSLGILFAASLVSASKFHSKYSHPQRNK 183

Query: 186 YKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMIVM 244
                 +         +T    +     +  +     +C     +Y    +    +  +
Sbjct: 184 ALNEHTVGTLEVYTDPNT----QLSTHLEQLLAQHQCHC----VVYIEENEQFSELSWL 234


>UniRef50_B3PJR7 Putative Transcriptional regulator CadC n=1 Tax=Cellvibrio
           japonicus Ueda107 RepID=B3PJR7_CELJU
          Length = 499

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 56/186 (30%), Gaps = 15/186 (8%)

Query: 6   NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65
            D+         L S    D  V L       L + ++   +V+ ++     +W  +G  
Sbjct: 23  IDSWRLCVHSNSLSS---GDQRVELEHRLVALLLMFIDHPGEVLEKERILATIW--QGKV 77

Query: 66  VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125
           V  ++L   IS +R+        +   I T+P  G++            +++        
Sbjct: 78  VNDDSLAVAISHLRKALGD-NPRSPRYIKTIPGVGYQFIA---------SAAPVEEAPAT 127

Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKD 185
           P  +   A     I      + +  +     + +L A ++   + Y            + 
Sbjct: 128 PAPVPEAAPLNPVIAERGYPHRRFPRSPGLWIPILLACLVLLTAWYARDEKKPVSSPDEL 187

Query: 186 YKTVAE 191
                 
Sbjct: 188 LVLAGT 193


>UniRef50_B2VJM5 Probable transcriptional regulator n=1 Tax=Erwinia tasmaniensis
           RepID=B2VJM5_ERWT9
          Length = 218

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/218 (17%), Positives = 67/218 (30%), Gaps = 21/218 (9%)

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
           M   + +LYQNIS +RR     G     +I T+PRRGF +     I        T+    
Sbjct: 1   MEPTSTSLYQNISNLRRALNKSGLN-EGIIRTMPRRGFLLSPLTEIVRETYTPDTETLPD 59

Query: 124 ----------------NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGA 167
                                +      + S         K +K + ++ I     +   
Sbjct: 60  LTTAGGVDRAEKEVFLPPTSEVSEKPTTRRSDTKTTASIEKKIKRMAAYGI-GLMLIFLL 118

Query: 168 YSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKH 227
             A    N  +       +      + C   V     D     ++    +    I+C+ H
Sbjct: 119 ILAPLYLNKAETLQNNSLFVPFMHSDRCSIFV---NRDSRLSSEEIHKFVSVLNISCQTH 175

Query: 228 PWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLSYRE 265
            + Y    K++    V  C  +  + E A C +  Y  
Sbjct: 176 RYFYITTYKNADRASVFMCQNSLLEKENAWCHSDYYIG 213


>UniRef50_D0I6A9 Putative transcriptional activator ToxR n=1 Tax=Grimontia hollisae
           CIP 101886 RepID=D0I6A9_VIBHO
          Length = 185

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 68/181 (37%), Gaps = 9/181 (4%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            +++ + + F    R++++    D  + L    +  L LL E    V+ +++   +VW +
Sbjct: 4   NYLLGNQVIFDTLKREVLTT---DKIISLGGREAAILKLLCENANMVITKEEINDKVWGK 60

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH---NDINIQNHVINSST 118
             + V   +L + IS +R+  + +       I T+P+ G+ +     ++ +         
Sbjct: 61  --VFVSETSLTKAISNLRKSLQLIDGVMCE-IKTIPKEGYMLILEGENLGLMVTEDEPPL 117

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178
           +     +     +      +   + N   +      S L+  S F +   SA  L +   
Sbjct: 118 EVKRIESKDLAMIKPPSANNRMLSSNVIGQSQHPANSVLMKPSWFFMTILSAVLLSSITS 177

Query: 179 P 179
            
Sbjct: 178 S 178


>UniRef50_Q2S7R1 DNA-binding winged-HTH domains n=1 Tax=Hahella chejuensis KCTC 2396
           RepID=Q2S7R1_HAHCH
          Length = 706

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 13/173 (7%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            + I     F P ++ +       L   +       L+LL+     VV  ++FF +VWE 
Sbjct: 29  EYNIAGVWLFNPRNQTIARA--DGLVHQVRAKTCDVLALLIRHHDRVVTTEEFFDQVWE- 85

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHV------IN 115
            G  V  N L ++I  +R  F      +   IAT P+RG+++   + +          + 
Sbjct: 86  -GRFVGENVLKRSIFELRHIFED---KSRDYIATAPKRGYRLKAAVALVRPDPPEPETMT 141

Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY 168
               A    AP  + V+     +I  A  ++   LK +      L   + G  
Sbjct: 142 PPASAEAEQAPSDVTVSPAPVATIPTASWYSRLDLKRLAVGGFFLFLLIWGMT 194


>UniRef50_Q1IKQ5 Lysine decarboxylase transcriptional regulator, CadC n=1
           Tax=Candidatus Koribacter versatilis Ellin345
           RepID=Q1IKQ5_ACIBL
          Length = 945

 Score =  107 bits (268), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 1/145 (0%)

Query: 19  ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78
            S+     +V L       L LLLE   ++V++++   R+W  +      + L   I  +
Sbjct: 23  RSLTKGGASVRLQDQPFEVLGLLLERPGEIVSREEIRQRLWSSDTFVEFDDGLNTAIKKL 82

Query: 79  RRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKES 138
           R             + TVPRRG++    +++ + V     ++ T +   A +  +    +
Sbjct: 83  RTALGDSALNPR-FVETVPRRGYRFIAPVSVLSPVATPEPESQTEDVVIASRERSQITIT 141

Query: 139 IGGAKNFNNKILKHIKSHLIMLSAF 163
                 F + +   +    +    +
Sbjct: 142 QPHHPVFWSTVALGLAISFLAGGWY 166


>UniRef50_UPI00018266EF transcriptional regulator, CadC n=1 Tax=Enterobacter cancerogenus
           ATCC 35316 RepID=UPI00018266EF
          Length = 184

 Score =  107 bits (268), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 4/126 (3%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVV-LTTPASRCLSLLLEAFPDVVAQQDFFTRVW 59
           M +++ D + +  E      +   D     LT  A+  + LL+    +VV ++ FF+ VW
Sbjct: 1   MKYLLADVLVYNDEEGTFSHIDAPDDAHQILTGTANAVMKLLVRHHGNVVERELFFSEVW 60

Query: 60  EEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTD 119
           +  G++   N+L Q ISI+R+            I TVP++GF +  DI +Q   +    D
Sbjct: 61  DARGVQGSNNSLNQYISILRKLLAGF-VPEKPAIVTVPKKGFMLSADIRVQ--PMPDPAD 117

Query: 120 AHTHNA 125
            H+   
Sbjct: 118 KHSDAP 123


>UniRef50_C9QI52 Cholera toxin transcriptional activator n=1 Tax=Vibrio orientalis
           CIP 102891 RepID=C9QI52_VIBOR
          Length = 229

 Score =  107 bits (268), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 73/215 (33%), Gaps = 11/215 (5%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++IND          + S+  + +   +       L+ +      V+++ +    VW + 
Sbjct: 2   FLINDAHVLDENGSYIHSL-KSHIRHPIGVNELSLLNYMFANQGQVLSKHELMHEVWHKR 60

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
           G+ V +++L  +IS  RRG          +I T    G++    +     +   +     
Sbjct: 61  GIVVESSSLLHSISTCRRGLED---KAGEVIRTERGIGYEFTGSVKKITSISEVTEPLEP 117

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
               P IK      E        N   ++ IK+  I++ A  +G   A   + +     +
Sbjct: 118 VIETPPIKELETKVEV---TAQLNAGHIRVIKALGILILAIFVGYIGASHFYKSPLIIGY 174

Query: 183 ----FKDYKTVAEINGCHFNVTEDTIDGLKEFDKY 213
               +K    + +  G        T+   ++    
Sbjct: 175 KVTSYKQCSYMPQQQGEKVFYQNPTLYQFEKLSLL 209


>UniRef50_B8CR40 Transcriptional activator CadC n=1 Tax=Shewanella piezotolerans WP3
           RepID=B8CR40_SHEPW
          Length = 512

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/204 (16%), Positives = 74/204 (36%), Gaps = 19/204 (9%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + I DN  F P   +L+     +  +++    S  L  L +     +++ +    VW  +
Sbjct: 6   YRI-DNWFFVPHENRLVL---DEQEILIDNRLSNLLLFLCDNPRTTLSRDEIIDHVW--K 59

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNH---------- 112
           G  +    + Q I  +R+  +         I TVP+RG+K+  D+ + N           
Sbjct: 60  GSILTDQVITQAIFELRKILKTNNQHLQGYIITVPKRGYKLDTDVEVVNEVKTAPTVLNA 119

Query: 113 ---VINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYS 169
              ++ S+ +  ++ A      +    E+        +       S L ++ A +  A  
Sbjct: 120 AHKIVESNAEQKSNFAAKEATKHKKATENEEPTTAVESAKSVRFSSSLAIVGALIAVAVL 179

Query: 170 AYWLWNNNQPKPFFKDYKTVAEIN 193
             +    +  K    ++   A++ 
Sbjct: 180 VVFFNRADIGKQPSVEHVVYADLE 203


>UniRef50_Q1Z6V5 Putative uncharacterized protein n=1 Tax=Photobacterium profundum
           3TCK RepID=Q1Z6V5_PHOPR
          Length = 285

 Score =  107 bits (267), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 33/254 (12%), Positives = 77/254 (30%), Gaps = 29/254 (11%)

Query: 9   IEFWPEHRKLISVHNADLNVV---LTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65
            +F      L+    +   +    L+   +  LS L++    +V +      VWEE+ + 
Sbjct: 8   WQFNATKNTLVHNGGSSGEIKTFSLSPKEADVLSYLIDNASKLVTKDALVEHVWEEQEL- 66

Query: 66  VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125
               ++   +S +R  FR   +    LI T+ ++G+          ++       +   +
Sbjct: 67  -NEQSILNVMSKLRSIFRQFDE--GELIKTIRKKGYVFEVSPEDVQYIRIELAKENPVLS 123

Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP----KP 181
              I               +     +++ S L +L+   +     Y   + N      + 
Sbjct: 124 ESEIAEA--------PQPVYQYLFSRYLWSVLFILTIIFLVIGGYYQYLSKNNDYDAYEI 175

Query: 182 FFKDYKTVAEINGCHFNVTEDTI----------DGLKEFDKYKTRILDSGINCKKHPWLY 231
             KD   +   +G    V   +           D + +F +Y   +         +  +Y
Sbjct: 176 NQKDIIYINNPDGEFVKVIFSSRGGSLTKRQYKDVIDKFSQYYHAVQTLPPESITYKTVY 235

Query: 232 FPLAKSSPGMIVMA 245
             +           
Sbjct: 236 VDVFHIHKTFFASI 249


>UniRef50_C0Q6W1 Possible transmembrane regulator n=32 Tax=Enterobacteriaceae
           RepID=C0Q6W1_SALPC
          Length = 259

 Score =  107 bits (267), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/263 (13%), Positives = 75/263 (28%), Gaps = 21/263 (7%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            ++I+  +    E   L     A  ++ ++      L    E    +  + D    VW  
Sbjct: 17  NYLIDKRVILDCERMTLSC---AGESITISESERSLLIAFYE---GLFKKDDLINYVWGR 70

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
           +G+ V   + Y+ I+ +R  F  +G    S + T PR G  +   I   +          
Sbjct: 71  KGVVVSDASYYKLINQLRGSFDKIGLKGAS-VVTRPRVGVLLSVSIEPLSDEAQDMPLPA 129

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
                 +          I       N+          +L  F+I            +   
Sbjct: 130 VAETELSTVEVRHDDTIIPPIPGAVNRKDWLYFCLAALLMFFMI-------YKVKGENID 182

Query: 182 FFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGM 241
           +F         +G  F         L +  +  + + +  I+ +    +Y          
Sbjct: 183 YF---TLNGSYDGYTFYSVGHDKTHLTDIVEAYSEMSN-EIHKQNGKIIY---YIRVSNT 235

Query: 242 IVMACNKNYNQHEVANCLTLSYR 264
            +     N        C+++  R
Sbjct: 236 NIFVQCLNQLDIAEPKCISIKER 258


>UniRef50_A4XNQ3 Transcriptional regulator, CadC n=1 Tax=Pseudomonas mendocina ymp
           RepID=A4XNQ3_PSEMY
          Length = 277

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 40/199 (20%), Positives = 80/199 (40%), Gaps = 19/199 (9%)

Query: 11  FWPEHRKLISVHNA-DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69
           F+P   +L  V +  +  + L    SR L  L+    +VVA+++  +  W +    V   
Sbjct: 32  FYPALYQLTLVRSGIEEKIDLGYSGSRLLERLVREPGEVVAREELMSHAWADR--VVGQG 89

Query: 70  TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAI 129
           +L Q I  +R+      + +  +I T+PRRG+ ++    +    I+        +AP   
Sbjct: 90  SLNQQIYTLRQILGD--EKSREIIQTLPRRGYLLNPSYLVYPPSIDDIGAVQEADAP--- 144

Query: 130 KVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYW-LWNNNQPKPFFKDYKT 188
                     G   NF ++  +   S L++LSA  + A   +  L+  + P         
Sbjct: 145 ----------GTPPNFLHRHSRRRTSWLVLLSALGLMAVGLFVALYQFSLPARLHSSELN 194

Query: 189 VAEINGCHFNVTEDTIDGL 207
           + +I+  + +     +  L
Sbjct: 195 LGQISLLYVDQDAQRLQQL 213


>UniRef50_Q7VR33 Transcriptional regulatory protein, C terminal domain n=2
           Tax=Candidatus Blochmannia RepID=Q7VR33_BLOFL
          Length = 212

 Score =  107 bits (266), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/199 (25%), Positives = 85/199 (42%), Gaps = 8/199 (4%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPD--VVAQQDFFTRV 58
           M +II+ NI F      L S+H++  ++ L+T A R L  L++       V ++  FT V
Sbjct: 1   MKYIIHSNIAFDTTEYILTSLHDSHASIKLSTSAGRILEELIKNRNTGLPVTREHLFTTV 60

Query: 59  WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118
           W+  G+      L Q +S+IR+    +G  + S+I TVP+RG KI+N + I+    NS  
Sbjct: 61  WKTHGLEPSNGNLNQQVSLIRKTLTLLGLNSSSII-TVPKRGLKINNQLIIEAVHNNSPN 119

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178
              T N      +      +           + ++K  LI+ +  +I     +    N  
Sbjct: 120 PQSTVNP-----IENQINNTPPLPNTILKNTITYVKYILILTAMLIIIFSIGFIYLYNKT 174

Query: 179 PKPFFKDYKTVAEINGCHF 197
                   K +   + C F
Sbjct: 175 NNTKLYCCKEINSCDICDF 193


>UniRef50_D2T7N3 Probable regulatory protein embR n=3 Tax=Erwinia RepID=D2T7N3_ERWPY
          Length = 299

 Score =  107 bits (266), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 27/176 (15%), Positives = 59/176 (33%), Gaps = 10/176 (5%)

Query: 5   INDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64
           I ++         L+   + +    L     + L +L E     V++++    VWE    
Sbjct: 6   IINHWSVDFASGTLLHQSSGEQR-RLGEYQLKLLRVLAENAGKAVSREELNNLVWERR-- 62

Query: 65  RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHN 124
            +  N+L   I  +R      G     +I T+P++G+ +  +       +   TD    +
Sbjct: 63  VIGNNSLPNAIHALRIALEDDG-KQQRIIRTMPKKGYILEAEFCEFITPLRPETDLAEAH 121

Query: 125 APPA------IKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLW 174
           +P          V A +  +         +   H   + ++    V+      W+ 
Sbjct: 122 SPREPFGDAKPVVLAPHTPAAAPQPEHRQRPSVHPLWYWLVPLQVVVLITLLVWIL 177


>UniRef50_A6CVT0 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
           RepID=A6CVT0_9VIBR
          Length = 267

 Score =  106 bits (265), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 34/249 (13%), Positives = 63/249 (25%), Gaps = 22/249 (8%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +    ++    ++R L    ++D  V L+      L  L+      + +    T  W 
Sbjct: 1   MNYHRRHDLVINLDNRMLT-KTSSDKVVTLSPSECLILKHLMNNGSQTLGRDYLLTHCWP 59

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI---NSS 117
             G  V  ++L   +  IR     V       + TV + G+ +         V+    S 
Sbjct: 60  --GRVVTNSSLNVAVKNIRNALLEVESRCK--VITVQKEGYCLVVPEQSDVQVVGFDGSR 115

Query: 118 TDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177
           +  +                    +K  +   L         L A +  +     L    
Sbjct: 116 STVNADQPKLDAVNPPIETSDTSPSKYHSLAKLSQFSYQFAPLGAGIAVSILVIVLLFR- 174

Query: 178 QPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKT--------RILDSGINCKKHPW 229
                   +     ING         +D     D             +   GI C     
Sbjct: 175 -----IGFFMERTAINGIDVYHDNAALDSQVMADLSSLASPGVEAIYMHRIGIECFDIQV 229

Query: 230 LYFPLAKSS 238
           +        
Sbjct: 230 VLLDSNGWQ 238


>UniRef50_Q1IHU2 Lysine decarboxylase transcriptional regulator, CadC n=1
           Tax=Candidatus Koribacter versatilis Ellin345
           RepID=Q1IHU2_ACIBL
          Length = 323

 Score =  106 bits (264), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 55/169 (32%), Gaps = 2/169 (1%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           +      + L     + L+LLL+    VV +++   ++W  +      ++L   I+ +R 
Sbjct: 64  LRKNGAKLKLQEQPFQVLALLLDRAGQVVTREEIQQKLWPADTFVDFDHSLNTAINKLRD 123

Query: 81  GFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIG 140
                       I T+PRRG++    +      +  S  A +               +  
Sbjct: 124 VLGDTASNPR-FIETLPRRGYRFIAPVEWNEPSVIPSGAAPSATESKDPSRQTEPSIATI 182

Query: 141 GAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDYKTV 189
                     +  +  L      +   + A  LW  ++     +D+  V
Sbjct: 183 AEPELPQADHRITR-LLFGGLQLMYLIFYACGLWRLDEIGDIAEDHFHV 230


>UniRef50_B7VRN4 Putative uncharacterized protein n=2 Tax=Vibrio splendidus
           RepID=B7VRN4_VIBSL
          Length = 265

 Score =  105 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 88/263 (33%), Gaps = 19/263 (7%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M    ++     P  R+ ++  N   +  L +   + L  L +     V++       W 
Sbjct: 4   MTKKSSNIWILNPTLRRQLTNKNDGTSKKLHSTDCKILETLCKHKGRTVSKSALTNAAWP 63

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
             G  V   +L Q+I+ +R      G    ++I TVP+ G+ +  D+      I ++ + 
Sbjct: 64  --GRVVSKASLTQSIAHLRIALGDNG-REQNIIKTVPKHGYSLVEDLVEIEIPIINTQNN 120

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
            + + P   +     +         + +    +    ++L +        Y+     + +
Sbjct: 121 QSTDGPTTTQELLKIEVKEQVFFLKHFQNFTLLVLSCLLLLSISWLTQLIYYNSTTERIE 180

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPG 240
              +DY       G  +  T +        D +K               LY      +P 
Sbjct: 181 WGQRDYL------GVTYFFTNNQNG----EDHFKAFKGKYT---NNLRMLYLS---DNPE 224

Query: 241 MIVMACNKNYNQHEVANCLTLSY 263
              ++C    N+  + N + +S+
Sbjct: 225 TFYISCTYQLNRSHMRNTMNMSF 247


>UniRef50_B2Q575 Putative uncharacterized protein n=1 Tax=Providencia stuartii ATCC
           25827 RepID=B2Q575_PROST
          Length = 329

 Score =  105 bits (262), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 101/323 (31%), Gaps = 67/323 (20%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCL--SLLLEAFPDVVAQQDFFTRVW 59
            ++IN+   F      +   +  D  V L+ PASR L   ++L     +  +++   +VW
Sbjct: 6   DYLINNKFIFETGKNFIFIKNEVDKFVELSKPASRLLNEIIILNQKSKIATREELLIKVW 65

Query: 60  EEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI------------ 107
           EE G+    N L   IS IR+ F  +G    S I TVP++GF+   D             
Sbjct: 66  EEYGLVGSNNNLNTYISEIRKKFELIGIDPKS-IVTVPKKGFRFDCDALETITDENDTPY 124

Query: 108 ----------------------------NIQNHVINSSTDAHTHNAPPAIKVNAGYKESI 139
                                       +  +         H  +    I+ +       
Sbjct: 125 LPEEEIVVLNSSDVTLGLDDYEHSVTHSSQYSEKNAEEATTHFVDQKSIIEEHLHQPRQD 184

Query: 140 GGAKNFNNK--------------ILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKD 185
                 ++                 K+      +++  +      ++   N+        
Sbjct: 185 NSISELSSTVQEEPQLLKIQNKGKFKNNPILFALIAMSLFLFIFVFYYTTNSNASMEVNS 244

Query: 186 YKTVAEINGCHFNVTEDTIDG--LKEFDKYKTRILDSGINCKKHPWLYF-----PLAKSS 238
           Y TV+E + C   +  + I+       D    ++    +NC++   +        +    
Sbjct: 245 YMTVSERDKCLIQIPINLIESSTKDSIDFVNKKLDKYNVNCQEPKRVILLSEPNSIQSVD 304

Query: 239 PGMIVMACNKNYNQHEVANCLTL 261
             + +  C +        +C+++
Sbjct: 305 KNISLSICKEK---KAQYDCVSI 324


>UniRef50_C3NSU2 Transcriptional activator of cad operon n=39 Tax=Vibrio
           RepID=C3NSU2_VIBCJ
          Length = 519

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 32/152 (21%), Positives = 55/152 (36%), Gaps = 11/152 (7%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + IND +    +  KL      D  V         L  L E   +V  +++    VW+  
Sbjct: 6   FQINDWV-LCIDENKLYR---QDREVSAEPRLINLLHFLAEHAGEVFGREELIQHVWD-- 59

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQN-----HVINSS 117
           G  V    + Q+I  +R+  R   +   S + TVP+RG+K+  ++   +          S
Sbjct: 60  GAIVTDQVVTQSIFELRKLLRDGREENLSYVVTVPKRGYKLVANVQRLDGNPYVSRQEES 119

Query: 118 TDAHTHNAPPAIKVNAGYKESIGGAKNFNNKI 149
           T +    A     V     E +  A      +
Sbjct: 120 TASDVCLADDIDDVEDAVPEIVFPAGPLTRAV 151


>UniRef50_Q1IIZ5 Transcriptional regulatory protein-like n=1 Tax=Candidatus
           Koribacter versatilis Ellin345 RepID=Q1IIZ5_ACIBL
          Length = 717

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 27/170 (15%), Positives = 56/170 (32%), Gaps = 11/170 (6%)

Query: 1   MY--WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRV 58
           M   + I D         ++  V   + +  L     + L  L     +V++++     V
Sbjct: 1   MKGSFHIADW----EVEPQINQVRRQNHSFHLEPKVMQVLVELAAHSDEVLSKEHLIHAV 56

Query: 59  WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118
           W      V  + L + IS IRR           +I T+P+ G+++   +         + 
Sbjct: 57  W--SDTFVSDDVLTRCISEIRRVLDDDARAPK-IIQTIPKSGYRLIAPVVFDKAAPPKNG 113

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY 168
            ++   A             +  A+     +   I +  ++  A V  A 
Sbjct: 114 SSNGSTATVEAATVETPP--LKTAETPRKNLAPWIVAVGVLAIAVVYFAI 161


>UniRef50_A4YSP3 Putative uncharacterized protein n=1 Tax=Bradyrhizobium sp. ORS278
           RepID=A4YSP3_BRASO
          Length = 1015

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 5/116 (4%)

Query: 7   DNIEFWP--EHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64
               F P    ++   +  +   ++L       L  L+E   ++V +++    VW    +
Sbjct: 4   KTFVFGPFQLDQQNALLRRSGERILLAPKPFGVLVHLVERAGELVTKEELLNAVW--SDV 61

Query: 65  RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
            V  ++L   I+ +R        +    I TVPRRG++    + I +H+ + + D+
Sbjct: 62  HVSESSLSVTINALRTALDDNKQSPR-YIETVPRRGYRFIAAVEIAHHLADPARDS 116


>UniRef50_D2A9T6 Transcriptional regulator, CadC n=3 Tax=Shigella flexneri
           RepID=D2A9T6_SHIF2
          Length = 254

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 95/264 (35%), Gaps = 31/264 (11%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           +IIND I F P    L +V+  D  +     A   L++LLE+    V +      V E  
Sbjct: 7   FIINDAIIFDPNKCSLSNVNTQDE-INFPATAGCILAVLLESNGGAVDRNSIIDSVLERF 65

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
              +  NTL Q IS++R+ F+ +G    ++I T+P+ GF I  +I I             
Sbjct: 66  SFDLSNNTLNQYISLLRKSFKNIG-VEENVILTIPKVGFYISENITISK------QSYDD 118

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
            +    +      K SI   +   + ++  +   +  ++                +    
Sbjct: 119 SHLQEDVVEKVERKRSIPLFRILISLVVVIVIIEMFAVAF---------------KDTYS 163

Query: 183 FKDYKTV--AEINGCHFNVTEDTIDGLKEFDKYKTR-ILDSGINCKKHPWLYFPLAKSSP 239
             DY  V   +I+ C   ++E+  +      + +   I    + C       + +     
Sbjct: 164 ITDYPLVKSGKIDTCDLYLSENLNEIGIAKSQIEAAEISKKHLPCVPGANFIYDVNSMHY 223

Query: 240 GM-----IVMACNKNYNQHEVANC 258
            +      +  C K+ N    A C
Sbjct: 224 LLGEGQRYLSRCIKSSNDETYAIC 247


>UniRef50_Q1ITK1 Lysine decarboxylase transcriptional regulator, CadC n=1
           Tax=Candidatus Koribacter versatilis Ellin345
           RepID=Q1ITK1_ACIBL
          Length = 724

 Score =  104 bits (260), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 66/180 (36%), Gaps = 10/180 (5%)

Query: 9   IEFWP--EHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
           + F P   +R+   ++     + +       LS+LLE+  ++V ++D  TR+W +     
Sbjct: 11  VRFGPYCANRQTGELYKFGTRLKIQDRPFEILSILLESPGELVTREDLRTRLWPDGTFVD 70

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ-------NHVINSSTD 119
             N +   +  +R       D     I TV  RG++    +             + +  +
Sbjct: 71  FDNNISTAVHKLRSVLSDSADAPR-YIETVGGRGYRFIGTVESDVPADSELAASVQAPAN 129

Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179
               ++  A  V+   K+ +       +   +  +  L++ +  ++G  +A        P
Sbjct: 130 KPETDSTSARVVSVIVKKPVALTTAPASVETRSRRWWLLIPALVLLGLIAAAAWIYFTPP 189


>UniRef50_B2JV11 Transcriptional regulator, winged helix family n=2 Tax=Burkholderia
           RepID=B2JV11_BURP8
          Length = 966

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 10/153 (6%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M  I    IE   +HR    V      V + + A   L+LL+ A  D+V++ +    VW 
Sbjct: 38  MTTIRIGQIEVSLDHR---DVRLDGRKVPIGSRAFDILALLIAARGDLVSKDEIMRAVWP 94

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
                V  N L  +IS +RR F          IATVP RG+++     +  H   +  DA
Sbjct: 95  T--TVVEKNNLQVHISALRRAFGD----ERERIATVPGRGYRLIMQAELGAHAAPT-RDA 147

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHI 153
            +      + + A  + +    +    ++ + I
Sbjct: 148 ASEREATGMSLPAVSEAARPARRPLPARVPELI 180


>UniRef50_A4CYI6 Putative uncharacterized protein n=1 Tax=Synechococcus sp. WH 7805
           RepID=A4CYI6_SYNPV
          Length = 209

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 71/211 (33%), Gaps = 15/211 (7%)

Query: 10  EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69
            F P+         ++    L+   ++ L  L++   ++V+++      W   G  V  N
Sbjct: 10  IFDPQKAT---YSTSEKTSRLSKSETKILQYLIDNCGEIVSRETLLQIGWP--GKFVVPN 64

Query: 70  TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST---DAHTHNAP 126
           +L  +I  +R+ F        ++I T+  +GF I +D  I++ +   +    D  + +  
Sbjct: 65  SLNVSIGNLRKAFGQ----DRAIIITIKDKGFTIKDDNFIRHPIEPEAIRECDPESDDVQ 120

Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPFFKDY 186
            +        +         +     I  + +++   + G       W +        D 
Sbjct: 121 YSASEEEEASDIEQEISPRQSLPTWKIVCYSLLILVILFGVALGLGSWKSPPCVTINSDL 180

Query: 187 KTVAEINGCHFNVTEDTIDGLKEFDKYKTRI 217
               +I    +       + L   D   T +
Sbjct: 181 TICGDI---KYLNINKLTENLPRNDATYTHV 208


>UniRef50_UPI000197C3BF transcriptional regulator, CadC n=1 Tax=Providencia rettgeri DSM
           1131 RepID=UPI000197C3BF
          Length = 261

 Score =  104 bits (258), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 41/253 (16%), Positives = 95/253 (37%), Gaps = 11/253 (4%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +I+N+ I++  +  ++  V      + LT   +    +L++     + +++   ++  
Sbjct: 1   MIYILNNIIKYNSDLGEIFRVDTELSVMKLTPVLNYIFIILIQNNKTTITREEILKKILN 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
           +  ++V  NTL Q IS +R+          + I ++ ++G  I ++I I+  +   +   
Sbjct: 61  KYDLKVSINTLNQYISTLRKVLHQQ-LLVENAILSISKKGLVISSEIQIEESIAKFNNKI 119

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
                PP    N   K  +   KN   K    I S  ++L    +        +     +
Sbjct: 120 EKSLVPPPTSSNKSNKSLLLSDKNHIIKKTLLIISVFLLLVIIYLINQIHAIKFPYASIQ 179

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAK---- 236
            +      ++ I  C     +D  +     D    + +D  + C+     Y+        
Sbjct: 180 SY-----KISTIGDCPVYGFKDNYEK-NMSDTISKQAIDFNLTCEDSDVFYYYNNIQNLG 233

Query: 237 SSPGMIVMACNKN 249
            +   +++ C KN
Sbjct: 234 KNKHSLLVKCKKN 246


>UniRef50_Q8D287 YqeI protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of
           Glossina brevipalpis RepID=Q8D287_WIGBR
          Length = 267

 Score =  104 bits (258), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/277 (18%), Positives = 106/277 (38%), Gaps = 26/277 (9%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLE--AFPDVVAQQDFFTRV 58
           M +IIN  + F      L      + ++ L+  A R L  L++       ++++  F  +
Sbjct: 1   MKYIINSLVIFDTIEYNLSLFKKKNKHIKLSHSAGRVLEELIKFHKNSSPISREYLFKNI 60

Query: 59  WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118
           W   G++     L Q IS+IR+G + +G    S+I T+P++G K+++ + I+    N++ 
Sbjct: 61  WIIHGLQPSNGNLNQQISLIRKGLKHLGLN-SSVIVTIPKKGLKLNDKLKIKKLEKNNAK 119

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178
           D        + K     K ++      N K          ++       + ++   NN  
Sbjct: 120 DFIIDEISSSFK-----KRTLFNLSRINFKYKIIFSLISFIILFIFFSMFYSFKYKNNLN 174

Query: 179 PKPFFKDYKTVAEINGCHFN--VTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLA- 235
            K +F D     ++N C          ++  +   K      ++   CKK+  +      
Sbjct: 175 QKLYFFD-----QVNSCKVYTFHPISILEKKEYDIKVAAAFEENDYKCKKNYIVIISKFV 229

Query: 236 ---------KSSPGMIVMACNKNYNQHEVANCLTLSY 263
                           +  C ++ N+  + NCL L +
Sbjct: 230 VSDDNLMKEDKKTNTFIEKCFRDKNERIL-NCLNLFF 265


>UniRef50_A4X1M5 Two component transcriptional regulator, winged helix family n=2
           Tax=Salinispora RepID=A4X1M5_SALTO
          Length = 251

 Score =  104 bits (258), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
             +   P   ++         V L     R L   +      V+++   + VW+      
Sbjct: 146 GGLRMEPATYEVTLH---GRPVSLPLKEFRLLYFFMTHADRTVSREQLLSAVWDGSTGE- 201

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS 116
            +NTL  +I  +R+   A G+    LI TV   G++      ++      
Sbjct: 202 SSNTLTVHIKRLRKRLEAEGE-PQPLIITVRGLGYRFTPPEQMEPSSTTP 250


>UniRef50_B9TBN5 Putative uncharacterized protein n=1 Tax=Ricinus communis
           RepID=B9TBN5_RICCO
          Length = 231

 Score =  103 bits (257), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 29/130 (22%), Positives = 52/130 (40%), Gaps = 2/130 (1%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
            +N          +L+    +  +V L+  A R L+LL +A   +V ++  F + W   G
Sbjct: 74  TLNGRWRLDELSNELVDPA-SGASVALSPIAVRLLTLLADAPNTIVGRRQLFDQGWRRYG 132

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
           + V  N+L Q I  +R  F  +G    S I TVPR G+ +   +  +     ++      
Sbjct: 133 IEVCENSLNQVICALRTAFARLGPEAPS-IRTVPRIGYSLVAQVAGRADRAPAAQVVAPD 191

Query: 124 NAPPAIKVNA 133
                   + 
Sbjct: 192 REASCETGDP 201


>UniRef50_Q3DDJ6 Phosphate regulon response regulator PhoB n=11 Tax=Bacteria
           RepID=Q3DDJ6_STRAG
          Length = 225

 Score =  103 bits (257), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 8/102 (7%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           II  N+E  P +     V      + LT      L L       V  +Q+   +VW E+ 
Sbjct: 129 IIIGNLEIDPTN---YWVKRGTEKIHLTLKEFELLVLFFRNPNRVFTRQELLDKVWGEQ- 184

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
               T T+  +I  +R      G     LIATV   G+++  
Sbjct: 185 FLGETRTVDVHIGTLRTKLGEDGY----LIATVRGVGYRLEE 222


>UniRef50_B7RJ24 Putative regulatory protein, possibly two-component response
           regulator n=1 Tax=Roseobacter sp. GAI101
           RepID=B7RJ24_9RHOB
          Length = 521

 Score =  103 bits (257), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 45/157 (28%), Gaps = 7/157 (4%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +   D+     +   L+       +  +   A + L+LL+     +V + +    VW+
Sbjct: 1   MRYRF-DHFTLDIDRGILL---EGGRDAPIEPRAFKLLALLVTHHDRIVTKDEIVENVWD 56

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
             G  V    +   I   R+     G      + T+  RG +    +           + 
Sbjct: 57  --GRIVSDAAIATVIKTTRKVLSDDG-VGQKYLRTIRGRGVRFVGTLMPSLAAEARKPET 113

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHL 157
                 P    +      +       ++    I   +
Sbjct: 114 DQAQPAPVQTASRPTIAILPFQMVGYSETFSAIADAI 150


>UniRef50_C6LEL9 DNA-binding response regulator RegX3 n=3 Tax=Clostridiales
           RepID=C6LEL9_9FIRM
          Length = 234

 Score =  103 bits (257), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 41/110 (37%), Gaps = 4/110 (3%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           W+I+ +I    +  K    +  D  + L+    + L   LE    V+ ++    RVW+  
Sbjct: 127 WLISGDIRLQEKEMK---AYLKDRELDLSLTEFKLLKYFLENKNQVLLKEQILARVWDSG 183

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNH 112
           G  V  NTL  NI  +R             I TV   G+   +    Q  
Sbjct: 184 GSFVEENTLMVNIRRLRTKVEEDASHPR-YIKTVHGMGYLWEDRPAEQVD 232


>UniRef50_A6CY17 DNA-binding transcriptional activator n=2 Tax=Vibrio shilonii AK1
           RepID=A6CY17_9VIBR
          Length = 529

 Score =  103 bits (257), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 55/146 (37%), Gaps = 8/146 (5%)

Query: 6   NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65
            D+  F+P   K +       ++V+    S+    L E    V ++ +    VW   G  
Sbjct: 10  IDDWVFYPYEDKFVLH---GEDIVIDNRLSKLFHFLCENPDTVFSRDELINEVW--NGSI 64

Query: 66  VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---IQNHVINSSTDAHT 122
           +    + Q I  +R+  +  G+  +  I TVP+RG+K+   +         +  +TD+ +
Sbjct: 65  LTDQVITQAIFELRKILKQHGNHPYGYIVTVPKRGYKLDATVEKVIETPQPVIETTDSVS 124

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNK 148
                    +A     I   +   + 
Sbjct: 125 EKIDVLRDESAPETTDIVLPEAGAST 150


>UniRef50_Q89V41 Bll1217 protein n=2 Tax=Bradyrhizobium japonicum RepID=Q89V41_BRAJA
          Length = 516

 Score =  103 bits (256), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 67/181 (37%), Gaps = 13/181 (7%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +   +N+        L  +  A + V L       L  L+     VV++ D  +++W 
Sbjct: 1   MRFCFENNVL----DGDLRELTCAGVAVPLQPQVFDLLLYLVAQRARVVSKDDLISQIWS 56

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI------ 114
           +    V  + L   I+  R+     G T   LI T+PR+GF+   ++     V       
Sbjct: 57  DR--IVSDSALNSRINAARKALGDDGATQR-LIKTIPRKGFRFIGEVREDVAVTLAPAEP 113

Query: 115 NSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLW 174
            ++      + P    +             F + I + I + L     F++ A ++ +++
Sbjct: 114 AAAPARTVADRPAIAVLAFENMSGDPEQDYFGDGISEDILTALSKQRWFMVIARNSSFIY 173

Query: 175 N 175
            
Sbjct: 174 K 174


>UniRef50_B1KAJ7 Transcriptional regulator, winged helix family n=3 Tax=Burkholderia
           cenocepacia RepID=B1KAJ7_BURCC
          Length = 493

 Score =  103 bits (256), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 46/121 (38%), Gaps = 9/121 (7%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
             +E     R L         + + + A   L++LL A   +V + +    VW   G  V
Sbjct: 4   GTLEVDLSTRSL---RRDGKAIHVGSRAFDVLAVLLSAAGRLVTKDELMAAVWP--GTVV 58

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126
             N L  +IS +R+           LI TVP RG+++        ++  ++      +  
Sbjct: 59  EENNLQVHISALRKLLG----PQRDLIVTVPGRGYQLTQKSAPSANLTPATPLRQGDSDI 114

Query: 127 P 127
           P
Sbjct: 115 P 115


>UniRef50_A5VGJ6 Transcriptional regulator, CadC n=1 Tax=Sphingomonas wittichii RW1
           RepID=A5VGJ6_SPHWW
          Length = 382

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 30/127 (23%), Positives = 54/127 (42%), Gaps = 7/127 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
                 PE R+L+      + V L       L+LL+     +V +  F + VW++  + V
Sbjct: 9   GQFVLDPEDRRLLR---DGVPVELNARYLDALALLVRNAGSLVGKDRFLSEVWKD--VPV 63

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126
               L Q I ++R+         H  I TVP+ G++   +++ +     +  DA  H  P
Sbjct: 64  TDEALTQCIRLLRQRLGDDASRPH-FIETVPKHGYRFIAEVDWRESSAPAE-DAAPHTLP 121

Query: 127 PAIKVNA 133
           P+   +A
Sbjct: 122 PSAAPSA 128


>UniRef50_A4SQG5 Transcriptional activator CadC n=2 Tax=Aeromonas RepID=A4SQG5_AERS4
          Length = 511

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 28/200 (14%), Positives = 55/200 (27%), Gaps = 25/200 (12%)

Query: 6   NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65
             +     +   L      D  V L       L  L      V  +      VW+  G  
Sbjct: 8   IHDWTLRVDDNMLCR---PDREVYLEPRLVNLLRFLACHTGTVFGRDALIKEVWD--GAE 62

Query: 66  VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---------IQNHVINS 116
           V    + Q+I  +R+  +         I TVP+RG+K+   +               + +
Sbjct: 63  VTDQVVTQSIFELRKILKDGRFDATDYIVTVPKRGYKLVASVRPLQVVSLLMADEQPVPA 122

Query: 117 STDAHTHNAPPAIKVNAGYKESIGGAKNFN-----------NKILKHIKSHLIMLSAFVI 165
                +  +PPA   +     +                    +    + S  I ++  ++
Sbjct: 123 VNPTLSDLSPPATADDDDALPNAAPFPAGPLTRAISAHAKDARSRWKMVSFDIFVAVILV 182

Query: 166 GAYSAYWLWNNNQPKPFFKD 185
              S     + +       D
Sbjct: 183 AIVSMLSYQHASPQVHTMLD 202


>UniRef50_C9NXT9 Cholera toxin transcriptional activator n=2 Tax=Vibrio
           RepID=C9NXT9_9VIBR
          Length = 229

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 76/219 (34%), Gaps = 8/219 (3%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           +IN++     E   + S   +++   +       L+ ++E   + + + +    VW + G
Sbjct: 3   LINESHILDVEQGYIHS-QGSNVRHPIGINEIALLNYMIERTGETLTKHELMHEVWLKRG 61

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN-IQNHVINSSTDAHT 122
           + V +++L   IS  RR           +I TV   G++    ++  Q        +A  
Sbjct: 62  IVVESSSLLHCISNCRRALEDRA---GEIIRTVRGTGYEFVGRVDAYQPANEVEQVEAVV 118

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
                        +        + ++++      +  ++++ I   S+  L   +  +  
Sbjct: 119 PEVVEIPVPQEPKETLRSRLVKYRSQLVATGLFVIGAVASYSIIENSSSPLAYASFEQQE 178

Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSG 221
           F       E NG   +    T   L +F +    +   G
Sbjct: 179 FASCWFTPENNGAKVHYQNST---LYDFGELTLLVDGQG 214


>UniRef50_B2JV05 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia
           phymatum STM815 RepID=B2JV05_BURP8
          Length = 658

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 8/121 (6%)

Query: 9   IEFWPEHRKLISVHN--ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
           I   P    L           V +   A   L LL+EA   +V+++    R+W E    V
Sbjct: 2   IRIGPLDIDLACREARVDGKPVRIGNRAFDMLELLIEAQGGLVSKEAILERIWPES--VV 59

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126
             N L  ++S +R+        +  LI T+P RG+++     I  H   +++      A 
Sbjct: 60  GDNNLQVHMSALRKLLGD----SRDLIKTIPGRGYRLVRGAAIVRHADTAASYVERQTAA 115

Query: 127 P 127
           P
Sbjct: 116 P 116


>UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15
           Tax=Proteobacteria RepID=Q0ASG1_MARMM
          Length = 229

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           I   +I      R    V  AD  + L     R L  L++    V +++     VW    
Sbjct: 132 IEAGDITMD---RVAHRVKRADREIHLGPTEFRLLDYLMQHPGRVFSREQLLDAVWG-SD 187

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
           + V   T+  ++  +R+            I TV   G+    +
Sbjct: 188 VYVEARTVDVHVGRLRKALN--NKEERDPIRTVRSAGYAFDVN 228


>UniRef50_C9Y6H6 Putative uncharacterized protein n=1 Tax=Curvibacter putative
           symbiont of Hydra magnipapillata RepID=C9Y6H6_9BURK
          Length = 526

 Score =  102 bits (254), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 69/184 (37%), Gaps = 19/184 (10%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            N       R+L+        V++   A   L +L++   ++V ++  F  VW   G+ V
Sbjct: 18  GNFVLQRHERRLLC---DGQTVMVGARAFDVLCVLVDHAGELVTKKKLFDLVWP--GLVV 72

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126
             N L  ++S +RR   A        IATVP RG++    +      + ++  +      
Sbjct: 73  EENNLQVHVSSLRRILGA------DAIATVPGRGYRFTLRLAAVPSAVETAQASKGKGRA 126

Query: 127 PAIKVNAGYKESI--------GGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178
              +        +           + F++ + + I SHL      ++ + ++ + + N +
Sbjct: 127 SDQQAYRRTIAVLPFVNLNADPEQEYFSDGLAEDIISHLTKSPWLLVVSRNSSFAYRNTK 186

Query: 179 PKPF 182
               
Sbjct: 187 ESNQ 190


>UniRef50_A4FNN5 Response regulator, two-component system n=12 Tax=Actinomycetales
           RepID=A4FNN5_SACEN
          Length = 237

 Score =  102 bits (254), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 19  ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78
             V   D  + L       L +L++    VV +++    VW E   +    TL  +IS +
Sbjct: 150 RRVLVDDHEIQLANKEFELLRVLMQHAGQVVTREEILEEVWPEPSRKGSK-TLDMHISWL 208

Query: 79  RRGFRA-VGDTTHSLIATVPRRGFKIHND 106
           RR      G      IATV   GF+ + D
Sbjct: 209 RRKLGDSNGRFDDQRIATVRGVGFRFNAD 237


>UniRef50_Q67JF4 Two-component response regulator n=1 Tax=Symbiobacterium
           thermophilum RepID=Q67JF4_SYMTH
          Length = 236

 Score =  102 bits (254), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 15  HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74
            R    V   D  V L+    R L  L     ++V ++     +W++    V  NTL  N
Sbjct: 145 DRATNRVSCGDRTVELSPKEFRLLWCLARRAGEIVGRETLLEELWDDTE-FVDDNTLTVN 203

Query: 75  ISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
           ++ +RR    +G T   +I T   +G++++ 
Sbjct: 204 VTRVRRRLEELGLTG--VIETKRGQGYRLNA 232


>UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1
           Tax=Sphaerobacter thermophilus DSM 20745
           RepID=D1C280_SPHTD
          Length = 240

 Score =  102 bits (254), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 5/99 (5%)

Query: 6   NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65
           + ++   P  R++ S       V LT      L LL      V ++     RVW E+ + 
Sbjct: 140 HGDLTIDPLSREVTSR---GQPVHLTAKEFDLLHLLAANPGRVFSRDYLLHRVWGEDYVG 196

Query: 66  VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104
           V   T+  +I  +R+     G      I T+   G+K  
Sbjct: 197 V-DRTVDTHILRLRKKLGGPGSPAER-IVTLWGVGYKYE 233


>UniRef50_Q2SHD7 Probable transcriptional regulator n=1 Tax=Hahella chejuensis KCTC
           2396 RepID=Q2SHD7_HAHCH
          Length = 487

 Score =  102 bits (254), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 47/151 (31%), Gaps = 5/151 (3%)

Query: 6   NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65
                   E  +L           L+    + L  L E     V+++    +VW  E   
Sbjct: 11  IGEWRINVETNRLYREAAEHQ---LSDKVCKVLLALAENPGRTVSRETLIQKVW-NENEY 66

Query: 66  VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125
           V    L   I  +R+ F    +     I T+P++G+++  ++++  +             
Sbjct: 67  VGEQALNTAIWQLRKAFNDSSEAPE-YIETIPKKGYRLLKEVSVIPYAPRQDITPPPSAE 125

Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKSH 156
           P           +   A     + +  +  +
Sbjct: 126 PAPAPTPEPETSTPDNAPEPPPEPITEVTPY 156


>UniRef50_Q89XL4 Transcriptional regulator n=1 Tax=Bradyrhizobium japonicum
           RepID=Q89XL4_BRAJA
          Length = 989

 Score =  102 bits (254), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
                 P  R+   V      + L+  A   L  L+    +VV++ +     W   G  V
Sbjct: 53  GPFRLDPSQRR---VERDGSPLQLSGRAFDILLALVRQAGNVVSKTELMATTWP--GAAV 107

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126
             N+L  +I+ +R+     G+     ++TV  +G+     ++       + T+    +  
Sbjct: 108 EENSLRVHIAALRKALGD-GNDGVRYLSTVSGQGYCFVAAVSRPEQRQPAPTNPTYVHNL 166

Query: 127 PA 128
           PA
Sbjct: 167 PA 168


>UniRef50_A1S359 Putative transcriptional regulator, CadC n=1 Tax=Shewanella
           amazonensis SB2B RepID=A1S359_SHEAM
          Length = 729

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 3/136 (2%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           +     +  L     + L  LLE     V++ +    VW   G +V  N + + I+ +R 
Sbjct: 21  IAKNGSDTKLELRVMQVLVCLLERAGRPVSRDELIREVW--RGGQVSDNAINRIIAQLRS 78

Query: 81  GFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIG 140
                   +  +I TVP+ G+ +  ++      + + +D    +  P         +   
Sbjct: 79  ALGD-DARSQQVIQTVPKVGYLLIAEVEPLEGQVITPSDLTHSSEVPNAAAPVAPIDIED 137

Query: 141 GAKNFNNKILKHIKSH 156
             +  ++ +   IK  
Sbjct: 138 NQQRSSSTMSPDIKPV 153


>UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein
           PhoP n=1 Tax=Mitsuokella multacida DSM 20544
           RepID=C9KKD5_9FIRM
          Length = 235

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 25  DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84
           D  + LT      L LL+       ++ +   R+W        T T+  +I  +R   + 
Sbjct: 154 DKTIALTPKEYELLKLLVTNPGRAFSRDELLERIWG-YEYYGDTRTVDVHIRHLRAKLKD 212

Query: 85  VGDTTHSLIATVPRRGFKI 103
              T    I TV   G++ 
Sbjct: 213 -DPTVSDAIETVRGVGYRF 230


>UniRef50_A6D0K2 Putative uncharacterized protein n=1 Tax=Vibrio shilonii AK1
           RepID=A6D0K2_9VIBR
          Length = 233

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/211 (17%), Positives = 73/211 (34%), Gaps = 12/211 (5%)

Query: 8   NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
           NI   P +  L    +      L +     L  L  A    + +Q      W   G  V 
Sbjct: 6   NITLNPNNGHLA--EDGLTIAKLNSSERLILEALCNAQGHPLTKQQLLDVGWP--GKIVV 61

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVIN------SSTDAH 121
            N+L   I  IR     VG      + TVP  GF++  ++ +  + +       SS  A+
Sbjct: 62  ANSLNVAIRNIRTALDKVGLVM--CLETVPTIGFRLDPNVILITNDVPFVSVNVSSASAN 119

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
            ++A  +       +E               +   + +++ +    + A  ++  +  KP
Sbjct: 120 DNDASSSELAAQPVEECPSPNDTVATPTRFELVKKVPLMALYAALLFCALVIFYVSSIKP 179

Query: 182 FFKDYKTVAEINGCHFNVTEDTIDGLKEFDK 212
               YK         F++ ++T+  L +  +
Sbjct: 180 SMHTYKRGNTTLVGSFSLPDNTVHALSKETE 210


>UniRef50_Q1AZL3 Two component transcriptional regulator, winged helix family n=24
           Tax=Bacteria RepID=Q1AZL3_RUBXD
          Length = 227

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 6/100 (6%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +++     R+   V  A   V L++     L  L+     V+++Q   + VW +     
Sbjct: 130 GDLKLDLLSRR---VWRAGRQVELSSREFALLEYLMRHPRQVLSRQQILSAVW-DYAFDP 185

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
            +N +   +  +RR     G+   SLI TV   G++    
Sbjct: 186 GSNVVDVYVRYLRRKLDRPGE--PSLITTVRGAGYRFDPP 223


>UniRef50_B5R4U2 Possible transmembrane regulator n=37 Tax=Enterobacteriaceae
           RepID=B5R4U2_SALEP
          Length = 254

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 88/262 (33%), Gaps = 24/262 (9%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++++  + F      L    + +  + ++   +  L         +  ++D    VWE  
Sbjct: 16  FLLDKRVVFDSTKMTL---SHGNEIIRISEAETHLLLAFW---HGLYKKEDIIHLVWENR 69

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
           G  V  ++ Y+ I+ +R  F ++G      I T PR G  +   I     +         
Sbjct: 70  GGCVSESSYYKLINQMRNDFSSIGLQPSD-IVTRPRVGVSLSVAIEPIKKIT-------- 120

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
                ++KV+    +     +    KI +H    ++  +  +   Y  + ++        
Sbjct: 121 -----SLKVSDENVKGPSTREKIFYKIKRHSVFVVLTGAILLALLYGVFTIYKAPVRNSP 175

Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMI 242
              +  + E N      T++    L E   +    L   I  +    LY       P M 
Sbjct: 176 DSFFTYLGEYNDYAIYKTKEDKVTLSEV-VFAFNSLKIKIYRQNGRHLY---YIREPNMN 231

Query: 243 VMACNKNYNQHEVANCLTLSYR 264
           +     N  +  V  C+T+  R
Sbjct: 232 IFLQCLNPVEMAVPKCITVKER 253


>UniRef50_C6IXU0 Transcriptional regulator domain-containing protein n=1
           Tax=Paenibacillus sp. oral taxon 786 str. D14
           RepID=C6IXU0_9BACL
          Length = 265

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 2/89 (2%)

Query: 15  HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74
            RK ++V+   + + LT      L  LLE    V+++++  + VW        +N +  +
Sbjct: 177 DRKKMTVYRGGIKIELTKTEFELLIKLLEHEGTVLSREELLSEVWGTT-FLGGSNVVDVH 235

Query: 75  ISIIRRGFRAVGDTTHSLIATVPRRGFKI 103
           I  +R+          + I TV   G+++
Sbjct: 236 IKSLRKKLGDNASRP-TYITTVRGVGYRL 263


>UniRef50_Q12K29 Transcriptional regulatory protein-like protein n=2
           Tax=Alteromonadales RepID=Q12K29_SHEDO
          Length = 604

 Score =  101 bits (252), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/197 (19%), Positives = 72/197 (36%), Gaps = 26/197 (13%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +  N+  EF  E   L     + L + +    ++ L+LLLE    V+++ D  + VW+
Sbjct: 1   MNYRFNE-FEFDSESLLLT---KSGLTLAIRHNEAKVLALLLERADKVLSKDDILSHVWQ 56

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
                V    ++QNIS +R          +  I T P+RG++       Q   +  + D+
Sbjct: 57  NRP--VSEQAVFQNISHLRSILG------NQAIKTFPKRGYQW------QLETVRVTPDS 102

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
            +   P   +               +NK  + +   L  +    + A+   W        
Sbjct: 103 QSSTIPVRTQYQPLP-------VPSHNKRPRWLYFALASMLMVSVLAFYLPWPDQQENTH 155

Query: 181 PFFK-DYKTVAEINGCH 196
                 Y  + ++NG  
Sbjct: 156 SRISIAYIPMTQLNGTE 172


>UniRef50_Q05943 Transcriptional regulatory protein glnR n=102 Tax=Bacteria
           RepID=GLNR_STRCO
          Length = 267

 Score =  101 bits (252), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 21/140 (15%), Positives = 37/140 (26%), Gaps = 7/140 (5%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           I N ++          S       + LT      L  L +    V  +      VW    
Sbjct: 127 IRNGDLSVDEAT---YSAKLKGRVLDLTFKEFELLKYLAQHPGRVFTRAQLLQEVWG-YD 182

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
               T T+  ++  +R      G    SLI TV   G++       +    +  ++    
Sbjct: 183 YFGGTRTVDVHVRRLRAKL---GPEHESLIGTVRNVGYRFVTPEKPEKGEKSDKSEKAER 239

Query: 124 NAPPAIKVNAGYKESIGGAK 143
                     G   +     
Sbjct: 240 AEKAERAETPGKAAAETNEA 259


>UniRef50_Q1ZPR1 Transcriptional activator CadC n=1 Tax=Photobacterium angustum S14
           RepID=Q1ZPR1_PHOAS
          Length = 481

 Score =  101 bits (252), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/258 (16%), Positives = 80/258 (31%), Gaps = 31/258 (12%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            + IND +    E+    S+  +    +L    ++ LS L +    V  + +    VW+ 
Sbjct: 5   NFKINDCLLITTEN----SLKKSGKTYILEPRITKLLSFLAQNQGIVFTRDELIDEVWD- 59

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---IQNHVINSST 118
            G  V    + Q+I  +R+  + +       I T+P+RG+K+  D+    I  +      
Sbjct: 60  -GAVVSDQVVTQSIFELRKILKKLD--EDHWIITIPKRGYKLDADVQQIYIDPNTGFKLE 116

Query: 119 DAHTHNAPPAIKVN--------------AGYKESIGGAKNFNNKILKHIKSHLIMLSAFV 164
           + H+ N       N              +     I  A   N      +   L  +    
Sbjct: 117 EFHSSNEHTNDNSNLGTAFPAGPMTRAFSKPDNDIPPASVSNKISNLMLNHWLFDVGILS 176

Query: 165 IGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFD----KYKTRILDS 220
           +   +  +    N      KD K   +IN    + +       K  +     Y       
Sbjct: 177 MLVLTLVFASWANNDNAPIKDLKNPRQINIEITSSSNQLYSIAKMIESTLFSYTDYTSSL 236

Query: 221 GINCKKHPW--LYFPLAK 236
             N +      LY     
Sbjct: 237 HPNSEAGKTLSLYISDNN 254


>UniRef50_A6F962 Putative uncharacterized protein n=1 Tax=Moritella sp. PE36
           RepID=A6F962_9GAMM
          Length = 305

 Score =  101 bits (252), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 96/274 (35%), Gaps = 27/274 (9%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +I   PE R +  + ++ + V +     R L  LL+     +++ + F   W  +G  V
Sbjct: 13  QHISIDPEMRAITCLLSS-ITVNMRPLPFRVLMHLLKNQDKCISRDELFEECW--QGAVV 69

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTD------- 119
              +L   IS IR   + + ++    I T+ ++G+ +   +N +    N + D       
Sbjct: 70  SEQSLTNTISYIRNKIKKL-ESNELKIKTISKKGYSLVITLNHELPENNHNGDLKDRAEE 128

Query: 120 ----------AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSH-LIMLSAFVIGAY 168
                         ++P     + G+   +   +  N   +K +    +      ++ + 
Sbjct: 129 SGETQELDKVIELDDSPGDSDKDNGFNRILSENEKINLPAVKGVYIRGMWFFVNLMLIST 188

Query: 169 SAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHP 228
             + +  NN+    F D K        + +V     DGL    +++  +  S +N     
Sbjct: 189 LIFLIAKNNKGNASFMDEKNYQRYELGNIDVYISDPDGLLVEGEFRKELDGSNLNSCDIN 248

Query: 229 WLYFP-----LAKSSPGMIVMACNKNYNQHEVAN 257
            +Y         K +  M      KN     + N
Sbjct: 249 KVYIRVYSSPYNKDNIAMSAFIITKNSESQNIIN 282


>UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB
          Length = 230

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 6/96 (6%)

Query: 8   NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
           ++   P  R+   V   +  V LT      L  L+E    V+ +Q     VW        
Sbjct: 139 DLILDPVTRE---VTRGERQVELTAKEYDLLRYLMEHPRQVLTRQQILEHVWG-CDFTGD 194

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103
           +N +   I  +R      G     LI TV   G+ +
Sbjct: 195 SNIIEVYIRYLRLKIE--GPGEKRLIQTVRGVGYVL 228


>UniRef50_Q52990 Phosphate regulon transcriptional regulatory protein phoB n=193
           Tax=cellular organisms RepID=PHOB_RHIME
          Length = 227

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +IE     R+   VH     V L     R L  L+ +   V ++      VW    + V
Sbjct: 135 GDIELD---RETHRVHRRSREVRLGPTEFRLLEFLMSSPGRVFSRSQLLDGVWG-HDIYV 190

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104
              T+  ++  +R+           +I TV   G+ + 
Sbjct: 191 DERTVDVHVGRLRKALN--FSNMPDVIRTVRGAGYSLE 226


>UniRef50_Q1AYG8 Two component transcriptional regulator, winged helix family n=1
           Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AYG8_RUBXD
          Length = 229

 Score =  101 bits (251), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 5/98 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            ++E  PE    I V      V+L+    + L  L  +   V  +     +VW E    +
Sbjct: 133 GDLEIDPEQ---IRVTKGGREVMLSPREFKLLYTLARSPGRVFPRGTLLRQVWGE-DEYI 188

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104
              T+   +  +R        +   LI TV   G+++ 
Sbjct: 189 DERTVNVYVQRLRNKLGD-DPSDPKLIETVRGFGYRLV 225


>UniRef50_D1TLX7 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia
           sp. CCGE1002 RepID=D1TLX7_9BURK
          Length = 476

 Score =  101 bits (251), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 12/121 (9%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M       IE     R    V     ++ L + A   L+ L  A   VV++ +    VW 
Sbjct: 1   MK---IGRIELDMNAR---CVRRDGQDLRLGSRAFDLLATLASANGRVVSRSELMQTVWP 54

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
             G  V    +  NIS +R+           LI TV RRG+++    +IQ  +  +++  
Sbjct: 55  --GTVVEDCNIDVNISALRKALGD----DRDLIVTVARRGYQLAPSRHIQPKLRTAASPR 108

Query: 121 H 121
            
Sbjct: 109 P 109


>UniRef50_C2HYC0 Transcriptional activator ToxR n=1 Tax=Vibrio cholerae bv. albensis
           VL426 RepID=C2HYC0_VIBCH
          Length = 275

 Score =  101 bits (251), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/209 (18%), Positives = 82/209 (39%), Gaps = 7/209 (3%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           +I+  +++F      L   +       L+   +R L LL++    VV++       W   
Sbjct: 10  YILEGSVKFSVIDSTLTYGNKNH---HLSYTETRILELLIKNSGSVVSKIQLIEYSW--T 64

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
           G  V   +L ++IS IR+ FR   +     I T+PR G+++    N+    ++ +++   
Sbjct: 65  GKVVAETSLAKSISNIRKVFREC-EFHDDAIQTIPRLGYRLSLRSNVYEEKMDETSNLIF 123

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
                AI  +   +  I  A ++     K I S+L+            Y   +++     
Sbjct: 124 LEETKAISDSLAPRAMIKYADSYLGINFKKIISYLVCFILLSASVTFLYETIHSSHSNFI 183

Query: 183 FKDYKTVA-EINGCHFNVTEDTIDGLKEF 210
             DY+ ++  I    + V ++    +   
Sbjct: 184 DADYEKISIHIENKKYIVIKNKNSNIPSR 212


>UniRef50_Q1ZVU4 Putative uncharacterized protein n=1 Tax=Photobacterium angustum
           S14 RepID=Q1ZVU4_PHOAS
          Length = 262

 Score =  101 bits (251), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 84/243 (34%), Gaps = 16/243 (6%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            + IN  ++F  +   L    ++    +LT   SR L+LLLE   ++V++++  T  WE 
Sbjct: 7   NYQINH-VKFDSKKGLL---SDSCQQHLLTYTESRLLTLLLERQNEIVSKEELKTFAWE- 61

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
               V  ++L ++I+ IR+           +IATVPR G+++  +    +          
Sbjct: 62  -HTVVTDSSLTKSIAKIRQSLSTYFPNDE-IIATVPRVGYRLDLEKTSFSEDKLEHEVET 119

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
           +   P    V    ++       F        +  L++  A +  +    +    N  + 
Sbjct: 120 STVLPSENNVGYQAQKL-----PFKKSFFIIKRGLLVLSIALLAYSGFNLFRKLPNDYRK 174

Query: 182 FFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGM 241
           F  +  +  +I    F             +K K  + +   NC                 
Sbjct: 175 FLNNDYSAIDITNNGFTHRIIKPKSFIIPEKIKAILAEKKCNC----IFMIDKVGDHYNF 230

Query: 242 IVM 244
              
Sbjct: 231 SYF 233


>UniRef50_C5EUU3 Two-component response regulator n=5 Tax=Bacteria
           RepID=C5EUU3_9FIRM
          Length = 223

 Score =  101 bits (251), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 42/105 (40%), Gaps = 8/105 (7%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++  D I       ++      +  V L+ P  + L +LL+     V ++    +VW+  
Sbjct: 127 YLTCDGITLDTSGMRVFC---GNEEVTLSQPEYQVLLVLLQNKGRTVPREMLLEQVWDSN 183

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI 107
           G  V  NTL   I  +R           S + T+   G+++ + +
Sbjct: 184 GNYVNNNTLTVTIKRLRGKLHQ-----PSCLKTIRSFGYRMEDSV 223


>UniRef50_A8SVV6 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC
           27759 RepID=A8SVV6_9FIRM
          Length = 228

 Score =  100 bits (250), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 19  ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78
           + V+ +D  + L+    R L LL++    V+ +     ++W++    V  NTL  +I  +
Sbjct: 142 MQVYISDEPIKLSVTEYRILELLIKNKGRVLTRDMIIQKIWDDNENYVDENTLNVHIRRL 201

Query: 79  RRGFRAVGDTTHSLIATVPRRGFKIHND 106
           R+            + TV   G+     
Sbjct: 202 RQKIEKDAGNPE-YVITVFGIGYTFGET 228


>UniRef50_A6UHF5 Transcriptional regulator domain protein n=13 Tax=Proteobacteria
           RepID=A6UHF5_SINMW
          Length = 531

 Score =  100 bits (250), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 35/193 (18%), Positives = 70/193 (36%), Gaps = 25/193 (12%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++  D +    E R+L         V +       L  L+     VV++ +    VW 
Sbjct: 1   MQFMFADYV-LDRERRELTLR---GQVVSVGPQVFDLLLHLVGTRDRVVSKDELLQAVWG 56

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS--- 117
             G  V  +T+  +I+ +R+     G     L+ TV R+GF+   DI I +         
Sbjct: 57  --GRIVSESTITSHINAVRKAIGDTG-GEQRLVRTVARKGFRFVGDIRIADSAEARQPGG 113

Query: 118 ------TDAHTHNAPPAIKVNAGYKESIGG---------AKNFNNKILKHIKSHLIMLSA 162
                 T   +   PPA+ +      ++              F + +++ I + L  +  
Sbjct: 114 PGSAGHTSLGSKEPPPALALPDKPSITVLPFQNLSGDADQDYFADGVVEDIITALSRIRW 173

Query: 163 FVIGAYSAYWLWN 175
             + A ++ + + 
Sbjct: 174 LFVIARNSSFTYK 186


>UniRef50_Q988M4 Mll6677 protein n=1 Tax=Mesorhizobium loti RepID=Q988M4_RHILO
          Length = 168

 Score =  100 bits (250), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 3/119 (2%)

Query: 19  ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78
             +   D  V L + A   L  LLE   ++V++Q+   RVW +  + V    L  +IS +
Sbjct: 41  FLLLEGDKPVPLGSRALGILIALLERPGELVSKQELMARVWPD--VFVVPTNLTVHISAL 98

Query: 79  RRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKE 137
           RR  R  G   +  I  +P RG++    ++       S             ++      
Sbjct: 99  RRVLRD-GRDGNRFIINIPGRGYQFVASVHTPLQRKASLETMRPIVPALEERLQIQAPS 156


>UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1
           Tax=Sphaerobacter thermophilus DSM 20745
           RepID=D1C683_SPHTD
          Length = 231

 Score =  100 bits (250), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 7/100 (7%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
             +    +  +   V      V LT      L L  E    V  ++  F R+W E G   
Sbjct: 136 GRLVIDVQAHE---VRVDGKPVQLTAREFELLQLFAEHPRQVFTREQLFQRLWGEFG--- 189

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
             +T+  +I  +R             I TV   G++   +
Sbjct: 190 DRHTVTVHIGRLREKIEE-DPANPRYIVTVWGVGYRFDGE 228


>UniRef50_B5CLM3 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC
           29176 RepID=B5CLM3_9FIRM
          Length = 226

 Score =  100 bits (250), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 24  ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83
            +  + LT    + L  L++    V+ +++    VW  +G  V  N++   +  +R+   
Sbjct: 146 GENEISLTAKEYQLLEYLMKNQGQVLTKENILEHVWGIDGQYVVDNSVSVLVGRLRKKIE 205

Query: 84  AVGDTTHSLIATVPRRGFKIHND 106
           A G+     I  V   G+++  +
Sbjct: 206 AAGERP--YIQNVFGLGYRMEEE 226


>UniRef50_C5B7S6 Transcriptional activator CadC n=2 Tax=Enterobacteriaceae
           RepID=C5B7S6_EDWI9
          Length = 548

 Score =  100 bits (250), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 22/130 (16%), Positives = 42/130 (32%), Gaps = 4/130 (3%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           +      +VL       LS        V+++ +    VW+     V  + + Q IS +R+
Sbjct: 20  ITREGRVLVLEPRLIDMLSYFAHHPDMVLSRDELIDNVWKRN--IVTNHVVTQCISELRK 77

Query: 81  GFRAVGDTTHSLIATVPRRGFKIHNDINI--QNHVINSSTDAHTHNAPPAIKVNAGYKES 138
             +         I TVP+RG+K+   +    +  +            P           S
Sbjct: 78  YLKDGRPEAPEYIVTVPKRGYKLVESVIWCGEESLEQLVAAVLPAETPSFPAAAEAVTPS 137

Query: 139 IGGAKNFNNK 148
              +  F  +
Sbjct: 138 GSASPAFAAE 147


>UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3
           Tax=Chloroflexus RepID=B8G7R1_CHLAD
          Length = 234

 Score =  100 bits (250), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 41/108 (37%), Gaps = 9/108 (8%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +    ++E  P+ R+      A   + LT      L  L      V++++D   +VW 
Sbjct: 130 MRFT---HVEIDPDARE---ARAAGQLLELTPTEFDLLIALARNHNRVLSREDLIEKVWG 183

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108
                     +   +S +RR   A+  T  +LI T    G++  +   
Sbjct: 184 A-DFYGTDRVVDVYVSQVRRKIEAL--TGENLIRTARGVGYRFVDTPV 228


>UniRef50_C0CI50 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica
           DSM 10507 RepID=C0CI50_9FIRM
          Length = 224

 Score =  100 bits (249), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 4/99 (4%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +  +    ++L      ++ V LT    R L   L+    V+ ++     VW+     V
Sbjct: 129 GDFVYDYAKKELTI---QNVPVKLTATELRLLEYFLKNRGQVLTREQILENVWDSYENFV 185

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
              TL  N+  +R             I T+   G+K   
Sbjct: 186 DERTLNVNVRRLREKIEK-DPKNPRYIVTMFGIGYKWKE 223


>UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3
           Tax=Gammaproteobacteria RepID=Q21DY6_SACD2
          Length = 234

 Score =  100 bits (249), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 6/103 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
           + +   P   ++     +D+ V +     R L   L     V  +      VW    + V
Sbjct: 136 EGLCLDPISHRVTI---SDMPVQMGPTEYRLLEFFLTHQERVYTRNQLLDHVWGGN-VYV 191

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI 109
              T+  +I  +R+     G      I TV   G++  N + +
Sbjct: 192 EERTVDVHIRRLRKALSLEG--HDRFIQTVRGAGYRFSNKVAL 232


>UniRef50_Q3KEV5 Putative transcriptional regulator n=2 Tax=Pseudomonas fluorescens
           RepID=Q3KEV5_PSEPF
          Length = 928

 Score =  100 bits (249), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 6/118 (5%)

Query: 10  EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69
              P  R    V   D  + L   A   L +LL    +VV++Q     VW +    V   
Sbjct: 15  RIHPGQR---LVLEGDQPLRLGRRAMDILLILLAHAGEVVSKQQLIAGVWPDS--VVEDI 69

Query: 70  TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPP 127
            L  +++ +R+     G      I TV +RG+     + +Q+     +T     +  P
Sbjct: 70  NLRVHMAALRKALGD-GQAGQRYIVTVAQRGYSFVAPVVLQSIEQRPTTANLGRHNLP 126


>UniRef50_C5AMC0 Transcriptional regulator, winged helix family protein n=1
           Tax=Burkholderia glumae BGR1 RepID=C5AMC0_BURGB
          Length = 956

 Score =  100 bits (249), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 38/122 (31%), Gaps = 9/122 (7%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
              E     R+L         V L   A   L +L  A   +V +      +W +    V
Sbjct: 15  GRFEIDLVGREL---RENGSAVRLGARAFAILEMLAAADGRLVTKDALLDAIWPD--TFV 69

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126
             NTL  ++S +RR            I TVP RG+++      +             +  
Sbjct: 70  EENTLQVHLSALRRALGD----QRDCIMTVPGRGYRLVRRAAAEPPRGAQPAARLPRHPD 125

Query: 127 PA 128
             
Sbjct: 126 VI 127


>UniRef50_Q2C5Y8 Putative uncharacterized protein n=2 Tax=Photobacterium
           RepID=Q2C5Y8_9GAMM
          Length = 292

 Score =  100 bits (249), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 81/272 (29%), Gaps = 15/272 (5%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + I  ++ +    R L   H+       T   S    LLL      VA++   ++ W + 
Sbjct: 10  YRI-GSVTYDSSTRTLT--HDNGQTEYFTPRVSDVFLLLLAHQGKCVAKEFLLSQCWGD- 65

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN----IQNHVINSST 118
              V    L   IS +R+ F          I TV + G+ +   ++    +         
Sbjct: 66  -TIVSEQALTNVISKLRKVFAKHA-LEMITITTVSKSGYLLEVKMDDSCVVDEEKKQVKQ 123

Query: 119 DAHTHNAPPAIKVNAGYKESIGG-AKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNN 177
                   P++  +   K +     K+  + IL       +++   +I A+  Y++ +  
Sbjct: 124 QPERKTIKPSLLSDDIIKVNENDITKSVESNILCRKSVSYLLIILIIITAFLIYYINSVI 183

Query: 178 QPKPFFKD---YKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPL 234
              P+F D   Y     I        E     + +    K         C  + + +F  
Sbjct: 184 NTTPYFIDTNYYIHEINIGSNKVYFNEVDDYDVDKELFIKGITKSLSSVCHSNIYAHFYY 243

Query: 235 AKSSPGMIVMACNK-NYNQHEVANCLTLSYRE 265
                    +       +       ++     
Sbjct: 244 NTRIANNSSIVVFIMPSDGRAFNFRMSKYTYG 275


>UniRef50_C8WRL2 Two component transcriptional regulator, winged helix family n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WRL2_ALIAD
          Length = 231

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 6/104 (5%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           I           R    V      + LT    + L L +     V++++    RVW  + 
Sbjct: 128 IEAGPFRLDLNTRT---VTRNGEPLALTAKEFQLLELFMRNPNKVLSKEVILDRVWGPDA 184

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI 107
             +  N +   +  +R+          S I TV   G+  H D 
Sbjct: 185 DVIG-NAVENYVHFLRKKIDEPDL--PSYITTVRGVGYMFHPDP 225


>UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201
           Tax=Proteobacteria RepID=PHOB_SHIDY
          Length = 229

 Score =  100 bits (248), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 13/96 (13%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 9   IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68
           +   P   ++++    +  + +     + L   +     V +++     VW    + V  
Sbjct: 137 LSLDPTSHRVMT---GEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTN-VYVED 192

Query: 69  NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104
            T+  +I  +R+     G     ++ TV   G++  
Sbjct: 193 RTVDVHIRRLRKALEPGG--HDRMVQTVRGTGYRFS 226


>UniRef50_Q3AVF0 Response regulator receiver domain protein (CheY-like) n=2
           Tax=Synechococcus RepID=Q3AVF0_SYNS9
          Length = 227

 Score =  100 bits (248), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 6/101 (5%)

Query: 6   NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65
           ND++   P  R+   V      + LTT     L  LL+    V+++     +VW++E   
Sbjct: 129 NDDLCLDPSTRE---VWRGGRALDLTTREFMLLLTLLQHQGRVLSRDQLLQQVWQDE-RA 184

Query: 66  VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
              N +   +  +R+   A G+    L+ TV  RG+ +   
Sbjct: 185 SSGNVVEVYVRYLRQKLEAEGE--GRLLHTVRGRGYCLGPS 223


>UniRef50_A8T8X6 Putative transcriptional regulator ToxR n=3 Tax=Vibrionales
           RepID=A8T8X6_9VIBR
          Length = 285

 Score = 99.8 bits (247), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 75/213 (35%), Gaps = 21/213 (9%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + I  NI   P+H  +  +  ++    +       + +L E    +  +++  TR W   
Sbjct: 2   YKI-KNILIHPDHPLVTDLTTSEEK-RIGYHDHLVILMLCENAGKITTKEELLTRAWP-- 57

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND-----------INIQN 111
           G  V   +L Q+IS IR      G T   L  TV + G+K+ +D           + ++ 
Sbjct: 58  GKHVSEGSLTQSISTIRNLIEDDGKTQKHL-KTVAKIGYKLESDAVSLQGKVDDGLEMET 116

Query: 112 HVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171
             +  +    T             K +       +    K  ++H+ M         +  
Sbjct: 117 IPLVDAPAPDTETLESIKIEEQCSKVANPKVTIPDQNHFKFNRNHIYMAIGCFFVVVAVI 176

Query: 172 WLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTI 204
           + +   Q +P +  +  +A++       +E+  
Sbjct: 177 FPFYLTQREPDYSGWLHLAKM-----YSSENMT 204


>UniRef50_B6FMI5 Putative uncharacterized protein n=7 Tax=Clostridiales
           RepID=B6FMI5_9CLOT
          Length = 243

 Score = 99.8 bits (247), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
             +  +P+ +++ +       + LT    + L  L+     V+ +++    +W  +G  V
Sbjct: 146 GELTLYPDRKQVFT---GKTEISLTAKEYQLLEYLMRNQGQVLTKENILETIWGVDGQFV 202

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
             NT+   I+ +RR     G+     I  V   G++I   
Sbjct: 203 VDNTVSVTINRLRRKIEPDGER-QGYIQNVFGLGYRIGEK 241


>UniRef50_Q182M4 Two-component response regulator n=14 Tax=Clostridiales
           RepID=Q182M4_CLOD6
          Length = 242

 Score = 99.8 bits (247), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 46/105 (43%), Gaps = 4/105 (3%)

Query: 2   YWII---NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRV 58
            +I+   +D   ++ E++ +I   + +  ++L+   ++ L  L+E     + ++     +
Sbjct: 131 NYILLVCDDLFFYYIENKLIIRTDDKEEEIILSKTETKLLKYLMENSMQTLTKEQLLESL 190

Query: 59  WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103
           W+  G  V  NT+  NI  +R+       +    I TV   G+  
Sbjct: 191 WDSSGNFVDDNTIAVNIRRLRQKVEK-NPSEPKYIKTVRGVGYMW 234


>UniRef50_Q2T8V0 Transcriptional regulator, putative n=9 Tax=pseudomallei group
           RepID=Q2T8V0_BURTA
          Length = 255

 Score = 99.8 bits (247), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 78/271 (28%), Gaps = 25/271 (9%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            ++I D + F      L  +   D    LTT  S  L ++L+    +  +     +VW  
Sbjct: 3   KYLIEDLVTFDAHLMTLTHL---DQTTELTTNESELLQMVLD---GMATKAAVIQQVWGS 56

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
           +G+ V  ++ +Q +  +R      G +  +LI T+PR+G K              + +  
Sbjct: 57  KGLVVTDSSYHQLVRSVRSRLEEHGISG-ALIKTLPRQGLKFLGSAQALTDAPVPAAERG 115

Query: 122 THNAPPAIKVNA--GYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAY--SAYWLWNNN 177
             +   A    +     +    +     +     ++   +  A + G         W   
Sbjct: 116 LADLDEAADEASRGPLAQHEPPSAPPAGRARNWRRTLRFVERALLAGLVVWVGLVTWKMI 175

Query: 178 QPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLY-FPLAK 236
                F        I          T   +         +   G+       +Y      
Sbjct: 176 SINDRFPWLTGHFGI---------HTHAHVSPRSAGLKLLASIGVRPGPGERVYEISRNG 226

Query: 237 SSPGMIVMACNKNYNQHEVANCLTLSYREVN 267
                 +  C           C T S R++ 
Sbjct: 227 D---RWLAICAG-ARHSSDERCTTYSTRDLT 253


>UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ
          Length = 232

 Score = 99.8 bits (247), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 5/102 (4%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
           D +   P  R++         V LT      L  L+ A   V ++     +VW       
Sbjct: 136 DELTVDPIGREITV---DGAPVRLTALEFDLLHALVRAPGRVFSRAQLLEQVWG-NDFYG 191

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108
               +  +I  +R          H LIATV   G+K      
Sbjct: 192 DERVVDVHIRNLRAELGDDATDPH-LIATVRGVGYKFIGRPR 232


>UniRef50_Q022A1 Transcriptional regulator domain protein n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q022A1_SOLUE
          Length = 605

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 3/103 (2%)

Query: 28  VVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAVGD 87
           V L   A   L +L+E   +VVA+QD  + VW +    V  + L  NISI+RR       
Sbjct: 2   VALEPKAVEVLLILVEKRGEVVARQDLMSAVWPD--TFVEESNLSSNISILRRQLGTP-P 58

Query: 88  TTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIK 130
                I T+P+RG++    +N     + ++T   +        
Sbjct: 59  DGGDYIQTIPKRGYRFVAAVNQAGSELEAATAEVSEIVSAEAT 101


>UniRef50_B6EJP4 Putative uncharacterized protein n=1 Tax=Aliivibrio salmonicida
           LFI1238 RepID=B6EJP4_ALISL
          Length = 302

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/260 (17%), Positives = 92/260 (35%), Gaps = 31/260 (11%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M  I   N+   P  R+L   +NAD  ++L        +LLLE   + + + + F   WE
Sbjct: 1   MQKITIVNLVLEPATRRLS--NNADDAIILRPLPYNVFTLLLEQKGNCIDRDELFDVCWE 58

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSS--- 117
             G  V    L   IS +RR    + +     I TV + G+ +  D  +    +      
Sbjct: 59  --GAIVTDQALTNVISGLRRNLIQL-EAEGIAIKTVSKVGYLLTVDETVVMQPVIEPKII 115

Query: 118 TDAHTHNAPPAIKVNAGYKE---------------SIGGAKNFNNKILKHIKSHL--IML 160
                +  P A+ V+   ++                +   +   +++    K  L   ++
Sbjct: 116 PPVIDNIEPKAVLVSPQAEDPLRVHDNVAISNDVQVLPTTEVGRSRVRLLTKPSLKSALI 175

Query: 161 SAFVIGAYSAYWLWNNNQPKPFF--KDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRIL 218
           +  +    +A   +      P+F  K+     EI    F +  +T  G    +  ++ + 
Sbjct: 176 AFCLCSLIAAVCWYEKASSVPYFLVKENYNHFEIKNTDFYILNNT-RGKDNIEAIQSGLE 234

Query: 219 DSGI-NCKKHPWLYFPLAKS 237
              +  C  +  +Y  +  S
Sbjct: 235 SLNLVEC--NAEIYIRMYDS 252


>UniRef50_B1J1E8 Two component transcriptional regulator, LuxR family n=3
           Tax=Pseudomonas putida RepID=B1J1E8_PSEPW
          Length = 330

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 34/133 (25%), Positives = 53/133 (39%), Gaps = 9/133 (6%)

Query: 24  ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83
               V L   A   L+ L++A   VV + + F+ VW   G  V  N L   IS++R+ F 
Sbjct: 19  DGKPVPLGGRAFEVLATLIKAKGRVVGKDELFSEVW--AGTVVEDNNLQVQISLLRKAFG 76

Query: 84  AVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKV--NAGYKESIGG 141
           A G     LI TVPRRG+++  D+ +               A   + +  +A     +  
Sbjct: 77  APG-----LIQTVPRRGYRLAVDVVLDLPCTALGRSPLKDAAEALVPLGDSASVPVLVVD 131

Query: 142 AKNFNNKILKHIK 154
                 K L  + 
Sbjct: 132 DDPSVRKALARLF 144


>UniRef50_B6EKJ8 Putative transcriptional regulator n=1 Tax=Aliivibrio salmonicida
           LFI1238 RepID=B6EKJ8_ALISL
          Length = 542

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 45/114 (39%), Gaps = 6/114 (5%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + IND      E++    ++  D  V +       L  L +   +V  + +    VW+  
Sbjct: 6   FQINDWTLVIEENK----LYRQDREVSVEPRLVNLLRFLAQHSGEVFCRDELIQHVWD-- 59

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS 116
           G  V    + Q+I  +R+  R         + TVP+RG+K+  D  + N     
Sbjct: 60  GAFVTDQVVTQSIFELRKILRDGRLDNARYLVTVPKRGYKLVADTQLVNFEETE 113


>UniRef50_D1VIP6 Two component transcriptional regulator, winged helix family n=1
           Tax=Frankia sp. EuI1c RepID=D1VIP6_9ACTO
          Length = 248

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
             +    + R++         + L+    + L  LL      V++      VW + G   
Sbjct: 156 GALRLDEDARRVTV---GGRTIALSPTEYKLLRFLLRNAGRAVSRAQILDHVW-DYGFDG 211

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
            +  +   IS +R+    V     +LI TV   G+++  +
Sbjct: 212 ESTVVETFISSLRKK---VDTAPPTLIHTVRGVGYRLSEE 248


>UniRef50_UPI00017890B9 putative two component transcriptional regulator, winged helix
           family n=1 Tax=Geobacillus sp. Y412MC10
           RepID=UPI00017890B9
          Length = 272

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 5/103 (4%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M  +I  ++    +   +   H     + LT      L LLL++   V  ++D   ++W 
Sbjct: 173 MRGLIYKDLSIDRDKMTI---HRGSTPIHLTKTEYHLLMLLLDSEGAVCTREDLMCKIW- 228

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103
           +      +N +  +I  +R+            IATV   G+++
Sbjct: 229 DTDFMGGSNVVDVHIKSLRKKLNDNAGAPR-YIATVRGVGYRL 270


>UniRef50_Q987X1 Transcriptional regulator n=1 Tax=Mesorhizobium loti
           RepID=Q987X1_RHILO
          Length = 903

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 50/119 (42%), Gaps = 6/119 (5%)

Query: 9   IEFWPEH--RKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
             F P    R+   ++     + L + A   L +L+    +VV  ++    VW +    V
Sbjct: 6   FRFGPFEMHREQRRLYRDGKLLQLGSRAFDILQILVMRAGEVVRHEELIAMVWPD--TFV 63

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125
             N L  N++ +RR     G  T+ LIA VP RG+     +  Q   +  + D H ++ 
Sbjct: 64  AENNLRVNMTALRRALGPEGSLTNGLIANVPGRGYSFTAPVAHQT--VEHAPDRHDNSE 120


>UniRef50_B1M5U0 Transcriptional regulator domain protein n=3 Tax=Rhizobiales
           RepID=B1M5U0_METRJ
          Length = 525

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 18/186 (9%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M +            R+L         + +       L +L+E    VV++ D    VW 
Sbjct: 1   MIYRF-GPFTLDSARREL---SRDGAEIAVEPQVFDLLRVLIERRDRVVSRDDLLEAVW- 55

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
             G  V   TL   I+  R      G T    I T+PR+G +    +      ++     
Sbjct: 56  -NGRIVSEATLGSRINAARTAIGDTG-TGQRWIRTLPRKGVRFVGAVREAASEVSPGIAP 113

Query: 121 HTHNAP----------PAIKVNAGYK-ESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYS 169
                P          PA+ V       +      F + + + I + L  +S   + A +
Sbjct: 114 EDAAEPGVTWRAGPRLPAVAVLPFTNMSADPEQDYFADGMTEEIITALSRVSGLFVIARN 173

Query: 170 AYWLWN 175
           + + + 
Sbjct: 174 STFTYR 179


>UniRef50_B0G6G3 Putative uncharacterized protein n=2 Tax=Lachnospiraceae
           RepID=B0G6G3_9FIRM
          Length = 224

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 15  HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74
           H K + V+  D  V L+      L  L E    +V+++     VW+ +G  V  NT+  N
Sbjct: 135 HMKTMQVYKGDEPVTLSKKEFSLLLYLWENAGQIVSKESILEHVWDIDGQFVDDNTVTVN 194

Query: 75  ISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108
           IS ++             IA V   G+     +N
Sbjct: 195 ISRLKNKLGT------EEIANVRGLGYIWTGKVN 222


>UniRef50_A5L4K5 Putative uncharacterized protein n=1 Tax=Vibrionales bacterium
           SWAT-3 RepID=A5L4K5_9GAMM
          Length = 294

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 72/263 (27%), Gaps = 36/263 (13%)

Query: 8   NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
           ++    + R LI+       V L+      L  L++     + ++   T  W   G  V 
Sbjct: 10  DLVIELDDRTLINPSLN-KVVTLSPSECLLLKYLMDNCSQTLGREFLLTHCWP--GRIVT 66

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN---------DINIQNHVINSST 118
            ++L   I  +R   + VG      + TV + G+             DI ++ ++++ + 
Sbjct: 67  NSSLNVAIKNVRSALKEVGSDCK--VITVQKEGYCFVAPENSVETDSDIALERNIVSENL 124

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHL--------------IMLSAFV 164
                  P +  ++     +   +    +K+   +                     S F+
Sbjct: 125 AEQGKGIPQSASLSEQDSSTCSESTVLESKLASDLNEVADAQVLSENTQAKGKQASSNFI 184

Query: 165 IGAYSAYWLWNNNQPKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKT--------R 216
                            +   +   A ING         ++     D             
Sbjct: 185 PLISGLAVSLFIVIILSYLGLFMERASINGIDVYHDNIELEQELVEDLTSLAKPGVEAIY 244

Query: 217 ILDSGINCKKHPWLYFPLAKSSP 239
           +   GI C     +         
Sbjct: 245 LHRMGIECGGMQVVVLDENGWQD 267


>UniRef50_A5P8P2 Transcription activator ToxR n=1 Tax=Erythrobacter sp. SD-21
           RepID=A5P8P2_9SPHN
          Length = 342

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 6/102 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +       R+L+        V L +     L LL     +++++  F   VW   G+ V
Sbjct: 11  GDFTLDLHGRRLLR---GGEAVELGSRYFDALVLLATHPGELISKTRFMDDVW--RGIPV 65

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108
               L Q I  +RR            I TVP+ G++   +++
Sbjct: 66  TDEALTQAIRTLRRALGDEASAPR-YIETVPKHGYRFIAELD 106


>UniRef50_D0X6S7 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3
           RepID=D0X6S7_VIBHA
          Length = 222

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 54/167 (32%), Gaps = 9/167 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +     +      +  +     +TT  S  L  L+     VV++       W    +  
Sbjct: 19  GSCLLKVQQHACELIVESGKRYNITTKESDVLKTLVTNLGKVVSKDALIRAAWGNPEIIG 78

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126
             N+L   IS +R+            I  VPR+G+++     ++      S       A 
Sbjct: 79  S-NSLPVAISNLRKVLE----PEKIKIVNVPRQGYQLE----VECMGSGESNSEQAEEAT 129

Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWL 173
             +  +   + +    +   NKI        ++   FV   +S  W+
Sbjct: 130 EQVVASKPERNTSKRIETNTNKISVICAWLSLLYVMFVASYFSFSWV 176


>UniRef50_B1KWY3 DNA-binding response regulator n=33 Tax=Firmicutes
           RepID=B1KWY3_CLOBM
          Length = 237

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 4/104 (3%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
             II+ +I       K+      +  ++LT    + L +L+E   +V+++     ++W+ 
Sbjct: 138 NKIISKDITIELLKAKVF---KGEEEILLTAGEYKLLLILVENKGNVLSRNILLEKIWDV 194

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
           +G  V  NTL   I  +R             I TV   G++   
Sbjct: 195 DGSFVDGNTLNVYIKRLREKIEK-DPKKPEYIETVRGIGYRWSE 237


>UniRef50_Q2NVH3 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str.
           'morsitans' RepID=Q2NVH3_SODGM
          Length = 251

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 14/174 (8%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           +I     F+P+ R L           L    S  L+LL   +P+ V   +F   VW   G
Sbjct: 16  VITSCFTFYPKKRCLEL---EGTIHQLRKKESEVLALLCRKYPNPVHHSEFLDEVWG--G 70

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
             V ++++ Q I  +R+  +  G    ++I T+P+ G+++  +            D    
Sbjct: 71  GYVTSHSIAQVIRSLRKLLKKNG---KNIILTIPKLGYRLGIEPQYDEGNEVKIFDFSQE 127

Query: 124 NAPPAIKVN------AGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAY 171
           NA  + + +        +  +        +  +      L++       +Y  Y
Sbjct: 128 NAGNSAEEDYFVSSGDRHPSTPPPRLYQTSGKVVKWFFRLLIFMLLFPASYGVY 181


>UniRef50_Q1IVX4 Two component transcriptional regulator, winged helix family n=5
           Tax=Bacteria RepID=Q1IVX4_DEIGD
          Length = 225

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 8   NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
           ++    + R++         V L+      L LL      V ++ +   +VW E      
Sbjct: 134 DLVMNLDGREIFR---GGRRVELSAKEFELLELLARNPGKVFSRFEIEEKVWPEY--TGG 188

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
           +N +   I  +RR     G     LI TV   G+ +  +
Sbjct: 189 SNVVDVYIGYLRRKLEEGG--ERRLIHTVRGVGYVLREE 225


>UniRef50_B1JQB0 Transcriptional regulator, CadC n=18 Tax=Yersinia
           RepID=B1JQB0_YERPY
          Length = 250

 Score = 99.0 bits (245), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 8/109 (7%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M  I+ +++ F P+ R +           +    S  LSLL E +P+ ++++D   R+WE
Sbjct: 1   MNTIVINDVFFTPQKRTI---DRNGKVTKIRNKESELLSLLCEYYPEPISREDIEKRLWE 57

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINI 109
             G  V  NTL Q IS +R          H L+ T+P++G++I     I
Sbjct: 58  --GSYVTDNTLTQTISNLRHALDD---KKHELVVTIPKKGYRIGIKPEI 101


>UniRef50_A5UT44 Two component transcriptional regulator, winged helix family n=2
           Tax=Bacteria RepID=A5UT44_ROSS1
          Length = 261

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 5/110 (4%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           I    ++  P  R++         V LT      L LL      V ++++   RVW    
Sbjct: 143 IEIGALQIDPRRREVYV---NHHPVELTPKEFELLHLLASHPGRVFSREELLERVWG-YS 198

Query: 64  MRVPTNTLYQNISIIRRGFRAVGD-TTHSLIATVPRRGFKIHNDINIQNH 112
               T T+  +++ +R      G+ + +++I+T    G+K+ +   ++  
Sbjct: 199 YMGNTRTVDVHVNRLRHKLELAGEGSCNNMISTEWGAGYKLESPALLEAE 248


>UniRef50_Q03AM3 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=7
           Tax=Lactobacillus RepID=Q03AM3_LACC3
          Length = 215

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           V   +  VVLT    R L+        ++A+      +W+     V  NTL   I  +R 
Sbjct: 132 VTKNETAVVLTAAEYRLLAYFFANPNQILARDQLLAALWDTREQFVADNTLTVTIKRLRE 191

Query: 81  GFRAVGDTTHSLIATVPRRGFKIHN 105
                     +LI TV   G+ I  
Sbjct: 192 KLED-DPAHTTLIRTVRGMGYFIDG 215


>UniRef50_C5ZZN9 Putative uncharacterized protein n=1 Tax=Escherichia coli Vir68
           RepID=C5ZZN9_ECOLX
          Length = 216

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/217 (20%), Positives = 80/217 (36%), Gaps = 24/217 (11%)

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
           M V  N LYQ+IS++R+     G T  ++I T PRRGF +  +I I    +  + D  + 
Sbjct: 1   MEVGPNALYQSISMLRKALSTCG-TPDNIILTAPRRGFSLSQEICISCDNLQEAMDEQSS 59

Query: 124 N-APPAIKVNAGYKESIGGA-------------KNFNNKILKHIKSHLIMLSAFVIGAYS 169
           +    + K+N  + E++                 +      K  +   I  S F      
Sbjct: 60  DWLNGSDKMNETHGENLMKEMWGAIPSESEMMEISSEYVRDKQCRKRKIDSSIFYYILIL 119

Query: 170 AYWLWNNNQPKPFFKD----YKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCK 225
              L         F      Y    E NGC+    + + D     +     +L +GI C+
Sbjct: 120 LTILSLIVPVYLVFLSDGEHYSKRFEFNGCYVYSRDASND-----NNTMDIVLKTGIKCE 174

Query: 226 KHPWLYFPLAKSSPGMIVMACNKNYNQHEVANCLTLS 262
              ++Y    +      ++ C K  +   + NC++  
Sbjct: 175 DRRYVYVTYFQGGDRESLIQCRKPLSTFSLPNCISYY 211


>UniRef50_Q5E341 DNA-binding transcriptional activator CadC n=9 Tax=Vibrionaceae
           RepID=Q5E341_VIBF1
          Length = 541

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 26/166 (15%), Positives = 57/166 (34%), Gaps = 17/166 (10%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + IND      E++    ++  D  V +       L  L +   +V  + +    VW+  
Sbjct: 6   FQINDWTLVIEENK----LYRQDREVSVEPRLINLLRFLAQHSGEVFCRDELIKHVWD-- 59

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHV--------- 113
           G  V    + Q+I  +R+  R         + TVP+RG+K+  +                
Sbjct: 60  GAFVTDQVVTQSIFELRKVLRDGRLDNTRYLVTVPKRGYKLVAETKQIRLEDTPYWKPCD 119

Query: 114 --INSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHL 157
              ++  D + ++           ++      +F    L    +++
Sbjct: 120 TFTSTEADENQNHNVELNTEEQEKEQDETAQLSFPAGPLTRAVTNI 165


>UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4
           Tax=Clostridia RepID=C8VW64_DESAS
          Length = 229

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 5/100 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            N+      R +      +  V LT      L L+      V  +     ++W +     
Sbjct: 134 GNLTLDYTKRTVAV---NNSKVELTPKQFELLWLMASNPNRVFTKAHLLDKIW-DSSFYG 189

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
             NT+  +I  +R        +    I TV   G+K   +
Sbjct: 190 DDNTVTVHIRRLREKV-ETDPSNPEYIKTVWGMGYKFEYE 228


>UniRef50_B5EQN9 Two component transcriptional regulator, winged helix family n=3
           Tax=Proteobacteria RepID=B5EQN9_ACIF5
          Length = 243

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 3/84 (3%)

Query: 19  ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78
             V+  ++ V L     R L L +     V ++     ++W  +   V   T+  +I  +
Sbjct: 149 HRVYADEVQVHLGPTEFRLLRLFVTNPERVFSRDMLLDQIWGRQS-FVEERTVDVHIRRL 207

Query: 79  RRGFRAVGDTTHSLIATVPRRGFK 102
           RRG    G     +I TV   G++
Sbjct: 208 RRGLEHHGYAQ--IIETVRGEGYR 229


>UniRef50_A5KUS7 DNA-binding transcriptional activator n=1 Tax=Vibrionales bacterium
           SWAT-3 RepID=A5KUS7_9GAMM
          Length = 615

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 57/144 (39%), Gaps = 8/144 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
           D   F P+  KLI     + +V++    S+ L    +    V ++ +    VW   G  +
Sbjct: 11  DVWLFIPDEDKLIM---DNEDVIIDNRLSKLLDFFCQNPNIVFSRDELINEVW--NGSIL 65

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN---IQNHVINSSTDAHTH 123
               + Q I  +R+  ++    +   I TVP+RG+K   ++    +    I ++T +   
Sbjct: 66  TDQVITQAIFELRKTLKSAERHSMGYIITVPKRGYKFDVEVKKTVLVPPPIVTNTVSLAD 125

Query: 124 NAPPAIKVNAGYKESIGGAKNFNN 147
                  V+   + S   + N  +
Sbjct: 126 TVSYDETVSQEQEASPVSSPNSES 149


>UniRef50_B2T985 Transcriptional regulator, winged helix family n=2 Tax=Burkholderia
           RepID=B2T985_BURPP
          Length = 504

 Score = 98.3 bits (243), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 6/112 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
                +P  R+L     +   V L + A   L  L++    VV ++   +R W    + V
Sbjct: 28  GPFTLFPTERRL---ERSGSVVQLGSRALDILIALIQHAGQVVDRRKLMSRAW--RNIVV 82

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118
             + L  NI+ +R+     G+     +  VP  G+     +  +     SS+
Sbjct: 83  DESNLRVNIAGLRKALGD-GEDGVRYVKNVPGIGYCFVGQLTRERIATESSS 133


>UniRef50_A5ED47 Transcriptional regulator n=1 Tax=Bradyrhizobium sp. BTAi1
           RepID=A5ED47_BRASB
          Length = 972

 Score = 98.3 bits (243), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 24/159 (15%), Positives = 55/159 (34%), Gaps = 12/159 (7%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
              E   + R+L +       V L   A   + +L+++   +V + +  ++VW   G  V
Sbjct: 34  GEWEIDLDRRELRAR---GGPVPLGGRAFEIMEVLIKSEGKLVTKDELLSQVWP--GATV 88

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA---HTH 123
             NTL  +IS +R+           ++ T+  RG+++      +       T     H  
Sbjct: 89  EENTLQVHISALRKALG----PDREMLKTISGRGYRLLGTWAPRASGAVLRTSPVHFHAV 144

Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSA 162
           +              + G       +   + ++ ++   
Sbjct: 145 SGATFQTNLPEATSELIGRDAAGQHLRNLLSTYRVVTLT 183


>UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD
          Length = 245

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 5/108 (4%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
             +   PE RK+         V LT+     L L         ++ +    VW       
Sbjct: 143 GKVVVEPEKRKVTV---EGEAVDLTSKEFELLLLFARHPGRAFSRDELLDEVWG-YQYSG 198

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI 114
            ++T+  +I+ +R        +    + TV   G++      +    +
Sbjct: 199 YSHTVNTHINRLRNKIE-PDPSEPRYVKTVWGVGYRFAEREELAARDV 245


>UniRef50_B1XXD9 Two component transcriptional regulator, winged helix family n=1
           Tax=Leptothrix cholodnii SP-6 RepID=B1XXD9_LEPCP
          Length = 263

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 43/99 (43%), Gaps = 4/99 (4%)

Query: 7   DNIEFWPEHRKLISVHNAD-LNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65
             +E  P+ R++   H    + + L     + L  L+     V+++      VW E+G  
Sbjct: 153 GPLEIDPDQRRVTLRHAGGLVELDLAPTEIKLLGCLMAHPDRVLSRDQLLALVWGEDGTT 212

Query: 66  VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104
               T+ QNI  +RR F A G     LI TV   G+++ 
Sbjct: 213 -DPRTVDQNIRRLRRCFEAAG--AGELIRTVRGLGYRLT 248


>UniRef50_Q12T20 Two component transcriptional regulator, winged helix family n=11
           Tax=Gammaproteobacteria RepID=Q12T20_SHEDO
          Length = 225

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           V  A+  ++L     + L  L+E    V+++   F  VW +      TN +  +I+ +RR
Sbjct: 142 VTLAEHELMLQPKEFQLLKYLMEHPNKVISRTLLFEAVW-DYHFDPRTNVIDVHIAKLRR 200

Query: 81  GFRAVGDTTHSLIATVPRRGFKIH 104
            F  +G     +I TV   G+++ 
Sbjct: 201 KFEEIGF--PEMIETVRGAGYRLS 222


>UniRef50_C7RA75 Transcriptional regulator, CadC n=1 Tax=Kangiella koreensis DSM
           16069 RepID=C7RA75_KANKD
          Length = 741

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 65/181 (35%), Gaps = 17/181 (9%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +   +P+   LI     +    +   A   L    +    VV++ +    VW   G  V
Sbjct: 8   GSWLVFPDRNSLIF---QEEEHNIEPLAMDVLVYFTQNPQKVVSRSELIEAVW--SGRVV 62

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQ----------NHVINS 116
             +++Y+ I+ +R+      D +   I T+ ++G+++  D+++             V ++
Sbjct: 63  GDHSVYRIINKLRQILAR--DPSREYIKTIRKKGYQLVCDVSVSVSGLLKESFTEEVNDN 120

Query: 117 STDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNN 176
             +  + +   +   +        G           I   LI+L   V+G  +    +  
Sbjct: 121 EHERLSESGLLSSDKSQHGVMVSKGKLTKRGLWRSSIFWGLILLIVSVVGFLTVKLYFYY 180

Query: 177 N 177
           +
Sbjct: 181 S 181


>UniRef50_A3D2S0 Transcriptional regulator, CadC n=3 Tax=Shewanella
           RepID=A3D2S0_SHEB5
          Length = 1067

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 9/164 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
              +  P    L+          L   A   L  L +   +VV+  +  +  W   G+  
Sbjct: 13  GEWQINPSANSLLL---GKQVKQLEPKAMDVLLFLCQRAGEVVSSDEIVSHCWP--GVDT 67

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN--IQNHVINSSTDAHTHN 124
             N L++ I+ +RR            I T+ +RG++   ++   I +            +
Sbjct: 68  GDNPLHKIINQLRRALDDSATDP-IYIETIRKRGYRTLAEVRFPIGHEATACPQSWQGGS 126

Query: 125 A-PPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGA 167
             P     +A Y E   G     + +L  I   +I   AF +  
Sbjct: 127 PFPGLQAYSANYAEVFFGRSEQISTLLNRISQQIIYGRAFCLVL 170


>UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14
           Tax=Bacteria RepID=B8FSL6_DESHD
          Length = 237

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 5/100 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            ++       KL+     +  V LT      L + +E     + +++    +W E     
Sbjct: 137 GSLHLDTAANKLL---KNNQEVELTPTEYSLLKMFMENPGKALRREEMLNGIWGE-DYFG 192

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
            T TL  +I  +R        +    I T+   G++   +
Sbjct: 193 DTKTLDVHIRRLREKIED-NPSDPRYIKTIWGSGYRWQPE 231


>UniRef50_C4L1R5 Two component transcriptional regulator, winged helix family n=1
           Tax=Exiguobacterium sp. AT1b RepID=C4L1R5_EXISA
          Length = 230

 Score = 98.3 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 5/97 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
           +N+    + R+       ++ + LT      L+  +     V+  +  +  VW E    V
Sbjct: 139 ENVTLDLQTRQ---CRKDEMLIRLTPKEFDILAYFMRHPNQVLTVEQIYEAVWGEAAFEV 195

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103
             NT+  +I+ IR           ++I TV   G+++
Sbjct: 196 -DNTVMVHITKIREKLEDTPRKP-TIIKTVWGVGYRL 230


>UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17
           Tax=Firmicutes RepID=C6D6P8_PAESJ
          Length = 238

 Score = 97.9 bits (242), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           I+   +    E R +   ++    + LT      L LL      V + +  F +VW E  
Sbjct: 141 IVAGGLTIDQEQRNVTLYND---RIDLTPKEFDILYLLASHPKKVFSAEHIFQQVWGEAY 197

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
                NT+  +I  +R+            I TV   G+    
Sbjct: 198 YESGGNTVMVHIRTLRKKLGE-DKQHQQWIKTVWGVGYAFQG 238


>UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2
           Tax=Acidobacteria RepID=Q1IMA9_ACIBL
          Length = 230

 Score = 97.9 bits (242), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 26/100 (26%), Gaps = 5/100 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +I        L         V  T    R L  L      V  +      VW E    V
Sbjct: 135 GDIVIDNGAMTLTVR---GNLVTTTATEFRLLEYLARHPGRVFTRDQLLDAVWRETH-YV 190

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
              ++   +  IR       +     + TV   G++    
Sbjct: 191 TPRSVDVYVRRIREKIEENPEDPR-YLKTVRGAGYRFEVP 229


>UniRef50_D2TJ93 Lateral flagellar transmembrane regulator n=1 Tax=Citrobacter
           rodentium ICC168 RepID=D2TJ93_CITRO
          Length = 325

 Score = 97.9 bits (242), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 28/241 (11%), Positives = 62/241 (25%), Gaps = 33/241 (13%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           I+ +N         LI     +    L       L  L +    V+++      VW+   
Sbjct: 12  IVVNNWRMDSSLNALIHCETGETR-RLGEYHFILLETLAKNADSVLSRSYLMAEVWKNR- 69

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH------------------- 104
             V  N+L   I  +R      G     +I T+P++G+  +                   
Sbjct: 70  -IVGGNSLPTAIHALRVAIDDDG-KQQEIIKTIPKKGYLFNKDYLTIEYSSEAAEHVVLS 127

Query: 105 -----NDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIM 159
                 ++   +     +T      A  A          +      + +         I 
Sbjct: 128 ENKNKENLTTTDFTAAEATAPWPLTADEAADQQLPSTAVVPPPAEPSRRRNTLFIGAGIA 187

Query: 160 LSAFVIGAYSAYWLWNNNQPKPFF-----KDYKTVAEINGCHFNVTEDTIDGLKEFDKYK 214
           + A  + +   Y+        P       + +     +   H   +           ++ 
Sbjct: 188 VIALFLLSLIYYFQAPTTPVSPDSPRLVKETFDHADNMEIYHLYTSTTNKKSTSLLAQHI 247

Query: 215 T 215
           +
Sbjct: 248 S 248


>UniRef50_Q2C702 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34
           RepID=Q2C702_9GAMM
          Length = 267

 Score = 97.9 bits (242), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/254 (17%), Positives = 86/254 (33%), Gaps = 24/254 (9%)

Query: 1   MYWII--NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRV 58
           M   I    N+ + P  R+L S  N   N  LT   +  L++LLEA    + ++  F   
Sbjct: 1   MDKKIYQIHNLTYDPVVRRLSS--NDGKNAFLTPKEACVLTILLEAKDQCINKEVLFCGC 58

Query: 59  WEEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSST 118
           W E    V   +L   IS +R+  ++V       I+TV + G+ +      +   ++   
Sbjct: 59  WGE--TIVTEQSLTNIISKLRKILKSV-CGDLITISTVIKEGYILEILPETKIEDVSD-- 113

Query: 119 DAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQ 178
                        N   ++    A +  +   K      I  ++F++      +    + 
Sbjct: 114 ------------ENLVKEQCCKPATHTMSTDKKRYIICSIFFASFLMIISIYTYYARKSP 161

Query: 179 PKPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSS 238
                ++Y     IN   F +   T         +         +C    ++    +  +
Sbjct: 162 FFLDKQEYNITKNINKSRFYLQSMTKKRNASDPLFDALAATIPTDCNLDLFVRIYQSIDA 221

Query: 239 P---GMIVMACNKN 249
           P   GM +   N +
Sbjct: 222 PEKEGMSIFLVNSD 235


>UniRef50_B5WFU1 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia
           sp. H160 RepID=B5WFU1_9BURK
          Length = 558

 Score = 97.9 bits (242), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 52/156 (33%), Gaps = 6/156 (3%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
                +P  R+L     +   V L + A   L +L++    VV ++   +R W    + V
Sbjct: 82  GPFTLFPAQRRL---ERSGSFVQLGSRALDILIVLIQHAGQVVDRRMLMSRAW--RNIVV 136

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126
             + L  NI+ +R+     G+     +  VP  G+     +  +  V  S +     +  
Sbjct: 137 DESNLRVNIAGLRKALGD-GEGRVRYVKNVPGIGYCFVGQLTRERIVAESGSQIAEPSPC 195

Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSA 162
                         G       +   ++ H ++   
Sbjct: 196 VHSADFGPGAACPQGRDEVLRTLASDLRRHRLISIV 231


>UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family
           protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI
          Length = 234

 Score = 97.9 bits (242), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 33/102 (32%), Gaps = 5/102 (4%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           +I   +      R    V      + L     + L  L E    V + +  F  +W +  
Sbjct: 137 LIFGELAID---RDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSAEHLFDSIWGK-D 192

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
                 T+  +IS +R+            I TV   G+K + 
Sbjct: 193 SFGDIRTVMVHISNLRKKIEQ-DPARPEYIITVRGMGYKFNG 233


>UniRef50_C6LC42 DNA-binding response regulator RegX3 n=3 Tax=Clostridiales
           RepID=C6LC42_9FIRM
          Length = 224

 Score = 97.9 bits (242), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 5/82 (6%)

Query: 26  LNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRAV 85
             + L++   + L LL+E     V ++    +VW+  G  V  NTL   +  +R      
Sbjct: 148 EEIRLSSLEYQILLLLMENKGKTVTRKQLLEQVWDSGGNFVNDNTLTVAMKRLREKLH-- 205

Query: 86  GDTTHSLIATVPRRGFKIHNDI 107
                S + T+   G+++   I
Sbjct: 206 ---NPSCLKTIRSFGYRMEESI 224


>UniRef50_Q12RS3 Transcriptional regulatory protein-like protein n=1 Tax=Shewanella
           denitrificans OS217 RepID=Q12RS3_SHEDO
          Length = 678

 Score = 97.9 bits (242), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 29/206 (14%), Positives = 63/206 (30%), Gaps = 24/206 (11%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++  DNIE       L+++      + +       L  L +     +++ +    VWE
Sbjct: 1   MIFVF-DNIEINTA---LVTITRNRQALEIEPKLFSLLVYLCQNPNRAISRDELINTVWE 56

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
                V    + + I  +R+            I TV + G+++   +             
Sbjct: 57  NR--FVSEAAINRAIGQLRKHIEDDTSHPK-YIRTVSKVGYRLDAVVQ------------ 101

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPK 180
              + P A       K+     +N + K    I    +++S  ++               
Sbjct: 102 ---HIPQAQFQWEAKKQLSNNKRNISPK--AVIFVFFVLISIILVLFTVPQLDTPQLSTS 156

Query: 181 PFFKDYKTVAEINGCHFNVTEDTIDG 206
               +   +   +   FN   DT + 
Sbjct: 157 VSIDNISPITTSSNISFNPHFDTANN 182


>UniRef50_D0MGI0 Two component transcriptional regulator, winged helix family n=1
           Tax=Rhodothermus marinus DSM 4252 RepID=D0MGI0_RHOM4
          Length = 243

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 8/101 (7%)

Query: 6   NDNIEFWPEHRKLISVHNAD-LNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM 64
             ++E   +   +          V L       L  L      V  +Q+    VW    +
Sbjct: 150 IHDLEIDRDRYLVYREGPEGRETVRLPRKEFELLYFLAAHPGKVFTRQELLDEVWG-RDV 208

Query: 65  RVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
            V   T+  +I  IR             I TV   G+K   
Sbjct: 209 YVVDRTVDVHIRKIREKLG------SHYIETVKGVGYKFRE 243


>UniRef50_Q0HTC3 Lysine decarboxylase transcriptional regulator, CadC n=3
           Tax=Alteromonadales RepID=Q0HTC3_SHESR
          Length = 1075

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 9/164 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
              +  P    L+          L   A   L  L +   +VV+  +  +  W   G+  
Sbjct: 9   GEWQVNPSANSLLL---GKQVKQLEPKAMDVLLFLCQNAGEVVSSDEIVSHCWP--GVDT 63

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH---TH 123
             N L++ I+ +RR       T    I T+ +RG++   ++        S+T        
Sbjct: 64  GDNPLHKIINQLRRALGDSA-TESRYIETIRKRGYRTLAEVRFPVGHEASATPQTWQGGS 122

Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGA 167
             P     +A Y +   G     + +L  I   +    AF +  
Sbjct: 123 PFPGLQAYSANYADVFFGRSEQISTLLNRISQQIQFGRAFCLIL 166


>UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1
           Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ
          Length = 238

 Score = 97.5 bits (241), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 24  ADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFR 83
               + LT      L  L +    V+++Q     VW +      T  +  +IS +R    
Sbjct: 150 DGRTIELTPKEFELLLFLCKHRGKVLSRQQLLHGVW-DYHFLGDTRIVDVHISHLRDKIE 208

Query: 84  AVGDTTHSLIATVPRRGFKIHND 106
               T    I TV   G+K+H  
Sbjct: 209 QNARTPE-YIMTVRNVGYKLHAP 230


>UniRef50_A3ER20 Putative two component transcriptional regulator, winged helix
           family n=2 Tax=Leptospirillum sp. Group II
           RepID=A3ER20_9BACT
          Length = 259

 Score = 97.5 bits (241), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 5/97 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            ++       +          + LT    R L  L+     V+ +++    +W E    V
Sbjct: 149 GDLVVDTYRYE---TRIDGREIRLTPIEFRILVYLVSHEDVVIRREELMKVLWGES-WEV 204

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103
             + L  +I  +RR      D+    I T+   G++ 
Sbjct: 205 DEHNLNVHIWALRRKLGEKSDSPR-FIETLRGTGYRF 240


>UniRef50_B2SNG2 Transcriptional regulatory protein, C terminal n=8 Tax=Xanthomonas
           RepID=B2SNG2_XANOP
          Length = 772

 Score = 97.5 bits (241), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 18/123 (14%), Positives = 46/123 (37%), Gaps = 2/123 (1%)

Query: 23  NADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGF 82
            A+  + L   +   L  L      VV ++     VW +       + + Q ++ +R+ F
Sbjct: 13  GAERPLRLAPKSLAVLLALARQPGQVVTREQLLAEVWPD--TLPTNDVVTQAVTQLRKAF 70

Query: 83  RAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVNAGYKESIGGA 142
            + G      I T+ + G+++   +  + H   S+T         + ++      ++  +
Sbjct: 71  ASHGGQRSEHIETIAKTGYRLMAAVVWEAHAPGSTTLPQESPGVQSPELAQADDGAVPAS 130

Query: 143 KNF 145
            + 
Sbjct: 131 VSV 133


>UniRef50_C8WRL6 Two component transcriptional regulator, winged helix family n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WRL6_ALIAD
          Length = 221

 Score = 97.5 bits (241), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 8/107 (7%)

Query: 3   WIINDN-IEFWPEHRKL--ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVW 59
           + +N     F      L    V      V LT      L  LL       ++Q+   RVW
Sbjct: 118 YEVNGAPFRFGEATVHLDAHRVVYRGQEVDLTAREYDLLLYLLRNVNRTCSRQELLERVW 177

Query: 60  EEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
             +     TN +   I  +R+      D     I TV  +G+++  +
Sbjct: 178 GFQ-APGDTNVVDVYIGYLRQKL----DPERRYIKTVRGQGYRLEVE 219


>UniRef50_Q6LJ01 Putative uncharacterized protein n=2 Tax=Photobacterium profundum
           RepID=Q6LJ01_PHOPR
          Length = 433

 Score = 97.5 bits (241), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 91/268 (33%), Gaps = 44/268 (16%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
              +     F    ++L      +  + L       L  L++    VV ++   +  W  
Sbjct: 8   KVTLGKGFTFDCSTKEL---KENERFIRLNRAEREILCYLIQHANSVVKKKQLLSVGWTR 64

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
           +   + T +L+Q I  +R   +   D    +I   PR G++I                  
Sbjct: 65  K--EITTTSLFQTIRNLRIKLKE--DEIGQIIEMAPRLGYQI------------------ 102

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
                   KV+     S+      + K  K+ +  ++ L    I  + + + ++ +  K 
Sbjct: 103 --------KVDPFSTSSVQNTIESSKKTHKNKRYKIVSLCLLFIVCFFSLFFFSQH-SKK 153

Query: 182 FFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGM 241
           +  +     ++N     + ++  D     D  KT +  + I+ +      F +AK+    
Sbjct: 154 YLHEIAYDDDMN-TFIYLAKEMDDLEFLRDYTKTFV--TPIDIENKL---FFIAKAGKYY 207

Query: 242 IVMACNKNYNQHEVANCLTLSYREVNRD 269
            V  C+K     E   C   + + V  D
Sbjct: 208 SVAFCDK----TEQNTCKLTTTKAVTFD 231


>UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2
           Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM
          Length = 231

 Score = 97.5 bits (241), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 34/100 (34%), Gaps = 5/100 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +       R L     A   V LT    + L L L     V ++     +V ++     
Sbjct: 134 GDAVLDQNSRSLTI---AGTPVELTPTEYKLLELFLAHPGQVFSRLQLIEKV-QDYAFEG 189

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
              T+  +I  +R+   A        I T+   G+K+  +
Sbjct: 190 YERTVDSHIKNLRKKLGAS-PDEPHYIKTIYGVGYKLVGE 228


>UniRef50_C6D5Y8 Putative two component transcriptional regulator, winged helix
           family n=1 Tax=Paenibacillus sp. JDR-2
           RepID=C6D5Y8_PAESJ
          Length = 255

 Score = 97.5 bits (241), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 23  NADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGF 82
                + LT      L + L +   V+ ++  F  VW  +     +N +  +I  +RR  
Sbjct: 171 RGGERIELTKTEYDLLLMFLTSDGAVLTREAMFDAVWGSQ-YFGGSNVVDVHIKTLRRKL 229

Query: 83  RAVGDTTHSLIATVPRRGFKIHND 106
           +      H  IATV   G+++  +
Sbjct: 230 KDSAVAPH-YIATVRGVGYRLVEE 252


>UniRef50_B1T3M3 Transcriptional regulator, winged helix family n=1 Tax=Burkholderia
           ambifaria MEX-5 RepID=B1T3M3_9BURK
          Length = 934

 Score = 97.5 bits (241), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 6/148 (4%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +   +P+ R+L      D    +   A   LSLL+    +VV+Q++F  +VW   G  V
Sbjct: 12  GSFRLYPDERRL---ERGDEIAEIGNRAFDILSLLVHRPGEVVSQKEFQEKVWP--GSVV 66

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126
               L   I+ +R+       ++H  I ++  RG+     +        ++ +A    + 
Sbjct: 67  GDVNLRVQITALRKLLSEDAASSHG-IRSITGRGYCFVGPVTYTTLNNTAAAEALGDASN 125

Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIK 154
               +           +  + K L  I 
Sbjct: 126 DISNLIGRRTAIEDICRLLSTKGLVSIV 153


>UniRef50_B1KFP5 Transcriptional regulator, CadC n=1 Tax=Shewanella woodyi ATCC
           51908 RepID=B1KFP5_SHEWM
          Length = 725

 Score = 97.5 bits (241), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 31/180 (17%), Positives = 62/180 (34%), Gaps = 8/180 (4%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            + + D +   P    ++S       + +   A + L  L+    + V++      VW  
Sbjct: 6   RYRLADKVV-DPAQCTILS---DGNLLKVELRAMQVLLCLINHAGEPVSRDMLLDEVW-- 59

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAH 121
            G  V  N + + I I+R        +    I T+P+ G+ +   I +   V      A 
Sbjct: 60  SGGEVSDNAINRIIGILRNQLGDNAKSPE-FIKTLPKVGYVLIAPITLVKEVTKHEKFAT 118

Query: 122 THNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP 181
              A   ++V    K  +     F        K  ++M     +  +S Y + +N   + 
Sbjct: 119 EVIAGAELEVE-ESKRLVFKRSLFATLYQHAGKMSILMAGLLSLLLFSVYQISHNESSES 177


>UniRef50_B7GFY6 DNA-binding response regulator, OmpR family (REC-wHTH domains) n=16
           Tax=Firmicutes RepID=B7GFY6_ANOFW
          Length = 226

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 15  HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQN 74
           +R   ++      ++LT    + L LLL+    V+ +     R+W      V   T+   
Sbjct: 140 NRTSHTLLKDGEQIILTPREFQLLDLLLQNRGRVLTRDIILDRIWG-YDADVSMKTIDAT 198

Query: 75  ISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104
           + ++R+     GD    LI TV   G+ I 
Sbjct: 199 VKLLRKKI---GDEQQQLIKTVRGVGYTIE 225


>UniRef50_A3EHX3 Putative transcriptional regulator ToxR n=6 Tax=Vibrio
           RepID=A3EHX3_VIBCH
          Length = 255

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 77/264 (29%), Gaps = 20/264 (7%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           + I+  I         ++   +   + L T     L  L E    ++ ++    + W   
Sbjct: 2   YKIDQKIL--SSDSPFLTDSLSREQIKLGTHEHLVLLALCEQAGKLIDKETLIKKGWP-- 57

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHT 122
           G  V  ++L Q +  IR      G +    I T+ ++G+ I +            T    
Sbjct: 58  GKFVTDSSLTQAVRNIRAYLNDDGKSQKH-IKTIAKKGYLIESKFV---------TLIQD 107

Query: 123 HNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKPF 182
            +      +    K+   G K    K      S L+ L   +   Y  Y +      K  
Sbjct: 108 FDKNQISNLQQETKKESFGKKESFGKKYILFLSILVQLLFIIYSIYKIYPITTVAIDKEI 167

Query: 183 FKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPLAKSSPGMI 242
           +       + +  +    +         +   +   +          LY  L K +    
Sbjct: 168 YPILSY--QQDYIYIYSDDFQYSEQLGVELIHSLSAERI----SPERLYIMLNKETVSYS 221

Query: 243 VMACNKNYNQHEVANCLTLSYREV 266
            +  N       +    T  Y+++
Sbjct: 222 FIEKNGKSKNRIIFTAGTKDYKKI 245


>UniRef50_Q1NLC6 Response regulator receiver n=3 Tax=Deltaproteobacteria
           RepID=Q1NLC6_9DELT
          Length = 298

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            N+E    ++    V      V LT    + L+ L+E    +V +++   R+W +  +  
Sbjct: 204 GNLEIDLRNQT---VKVDGQEVYLTAKEFQLLACLMENRNHLVTREEIRKRLWRDSKIYS 260

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
            +  +  +I  +R+         H  I TVP RG++   
Sbjct: 261 WSRVIDVHIQHLRQKVEETPSQPHH-IVTVPGRGYRFME 298


>UniRef50_C6AVM9 Response regulator receiver protein n=1 Tax=Rhizobium leguminosarum
           bv. trifolii WSM1325 RepID=C6AVM9_RHILS
          Length = 277

 Score = 97.1 bits (240), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 63/161 (39%), Gaps = 13/161 (8%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
                 P  R+L+          +   A   L +LL +   +V++ +    VW    M V
Sbjct: 38  GRFCAIPHSRQLLL---DGRPHEIGGRAFDLLMVLLRSNGRIVSKDEILNEVWP--SMVV 92

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH--- 123
               L   +  +RR   + G    ++I T+ RRG+ +  D  + +  +   T   T    
Sbjct: 93  EECNLRFQVKSLRRALGSQG----NMIKTIVRRGYMLIRDDVVPDDEVRFDTTRLTTISG 148

Query: 124 -NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAF 163
            + P A+K  A Y   I   ++    I   ++S  + +++F
Sbjct: 149 IDTPAAVKAAAPYIALIEDDESVRRSISTLLRSVGLGVASF 189


>UniRef50_A5N5X6 Transcriptional regulator n=5 Tax=Clostridium RepID=A5N5X6_CLOK5
          Length = 225

 Score = 97.1 bits (240), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 5/98 (5%)

Query: 8   NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
           ++ F P   +L      +  V LT+  S+ L LL      V+ +     RVW  +     
Sbjct: 132 SLTFDPLRGELQY---KENKVKLTSKESQLLELLARNKNQVLTKDQILDRVWGPDSDVEM 188

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
            N +    S +R+  R +      +I T+   G+ +  
Sbjct: 189 NNNIEVYFSYLRKKLRRLNCN--VIIETIRGIGYCLKE 224


>UniRef50_B6FSP5 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM
           1787 RepID=B6FSP5_9CLOT
          Length = 226

 Score = 97.1 bits (240), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 1/82 (1%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           V+  +  + LT    + L+L  E    ++ +    + +W+E G  V  NTL   I  +R 
Sbjct: 143 VYKNNERIELTALEYKILALFFENKGRILTRGQILSGIWDESGNFVNNNTLTVYIKRLRE 202

Query: 81  GFRAVGDTTHSLIATVPRRGFK 102
                      +I TV   G+K
Sbjct: 203 KIEE-DPNAPKIIKTVRGMGYK 223


>UniRef50_C7BJM7 Putative uncharacterized protein n=1 Tax=Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949 RepID=C7BJM7_PHOAA
          Length = 178

 Score = 97.1 bits (240), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 62/180 (34%), Gaps = 12/180 (6%)

Query: 1   MY-WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVW 59
           M  ++I  N+ F      + S       + L +  +  L L  +   +V+ +      VW
Sbjct: 1   MKDYVIGRNVFFNSLKCNISSTV---QEITLGSREASLLELFCKNPNEVINKTQIHESVW 57

Query: 60  EEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH-----NDINIQNHVI 114
               + V   +L + +S +R+      D T   I T+P+ G+        ++  I+ +++
Sbjct: 58  GA--VIVNETSLTKAVSNLRKALSGFDDLTCE-IKTIPKEGYIFIIGEKLDNWCIKENLL 114

Query: 115 NSSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLW 174
                         + V +             +K   ++   +I+ S F     +    +
Sbjct: 115 PKEVSLSFSRQDKKMDVVSDELSLQNSISPAVSKSFLNLVYIVILSSLFSSVITTGLITF 174


>UniRef50_B1YN09 Transcriptional regulator, winged helix family n=3 Tax=Burkholderia
           RepID=B1YN09_BURA4
          Length = 481

 Score = 97.1 bits (240), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 9/146 (6%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
              E     R L     A   V L + A   LS+++ A   +V++ +    VW   G+ V
Sbjct: 27  GEFELNLGMRALY---KAGREVPLGSRAFDILSVIVLASGRIVSKDELMDTVWP--GVFV 81

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126
             N ++ ++S +R+           LI TVP RG++      +                 
Sbjct: 82  EENNIHVHLSAVRKALGDH----RQLIDTVPGRGYRFKVFDGMSAEPGRDVPTERHAPLF 137

Query: 127 PAIKVNAGYKESIGGAKNFNNKILKH 152
                    +  + G +    +    
Sbjct: 138 RNADTMTPPRHRLPGRRTLLGRATAL 163


>UniRef50_A6X2C4 Two component transcriptional regulator, winged helix family n=59
           Tax=cellular organisms RepID=A6X2C4_OCHA4
          Length = 255

 Score = 97.1 bits (240), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 13  PEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLY 72
              R   +    D+++ L     R L  L+     VV +      VW +      TN + 
Sbjct: 154 ELDRLAHTARRQDVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW-DYHFDPQTNVID 212

Query: 73  QNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
            +IS +R       D    L+ TV   G+ +  
Sbjct: 213 VHISRLRSKIEKGFDGP--LLHTVRGAGYMLKA 243


>UniRef50_C6D9U3 Transcriptional regulator, CadC n=5 Tax=Pectobacterium
           RepID=C6D9U3_PECCP
          Length = 261

 Score = 96.7 bits (239), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/267 (16%), Positives = 88/267 (32%), Gaps = 15/267 (5%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++IN+ I F      L  +   +  + L+ P SR LSLL+E     +++        E
Sbjct: 1   MVYLINELIIFNEGEGTLTWIERENEAISLSFPISRLLSLLIENQRVTLSRDFLLKEALE 60

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI-----N 115
           +  +    N L   +S++R+  R         I T+P+ G   + +  +           
Sbjct: 61  KHALSPSINNLNNYLSLLRKVLREFDLADS--IVTIPKLGIVFNVESVVSYPEADRGGGE 118

Query: 116 SSTDAHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWN 175
             T           KV     +        ++ I + IK+        +  A     L+ 
Sbjct: 119 KETSHQVVEENVEEKVEEDVYQEKKPFSIKHHAISEPIKTQQYTRCLLIWIAIVGVILFA 178

Query: 176 NNQPKPFFKDYKTVAEING-CHFNVTEDTIDGLKEFDKYKTRILDSGINCKKHPWLYFPL 234
            +    F   +    +++G C      D++      D       ++         +    
Sbjct: 179 LDNANRFPYRHLVDVKMSGKCDLFYLYDSVGYPLPTDYENLCSENTLFFLS--KKIVISG 236

Query: 235 AKSSPGMIVMACNKNYNQHEVANCLTL 261
                  IV++C KN +      C+T 
Sbjct: 237 MLDKKSEIVISCKKNGS-----GCVTY 258


>UniRef50_C8WHB5 Two component transcriptional regulator, winged helix family n=5
           Tax=Bacteria RepID=C8WHB5_EGGLE
          Length = 223

 Score = 96.7 bits (239), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 4/96 (4%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            ++E          V  A  ++ LT    R L L  ++   +V ++     +W+  G  V
Sbjct: 129 GDVEIDAGT---ACVRKAGRDLALTALEYRLLLLFAQSRGKLVTREHVRNAIWDSAGEYV 185

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFK 102
             NTL   +  +R            LI TV   G++
Sbjct: 186 SDNTLSVYVKRLRDKVED-DPAEPRLILTVRGLGYR 220


>UniRef50_D1C5Q5 Two component transcriptional regulator, winged helix family n=52
           Tax=Bacteria RepID=D1C5Q5_SPHTD
          Length = 244

 Score = 96.7 bits (239), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 8   NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
           ++      R     +  D  + LTT     L L +     V+ +     RVW        
Sbjct: 142 DLTLDTTSR---FAYRGDRRIELTTREYELLLLFMRHPNQVLTRDVIMERVWG-YDFPGE 197

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINS 116
           +N L   +S +RR   A G+    L+ TV   G+ +      +    +S
Sbjct: 198 SNVLEVYVSNLRRHLEAGGE--PRLLQTVRGAGYALRLPTEERAGSQSS 244


>UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1
           Tax=Herpetosiphon aurantiacus ATCC 23779
           RepID=A9AWM9_HERA2
          Length = 232

 Score = 96.7 bits (239), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 2/81 (2%)

Query: 25  DLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRRGFRA 84
           D+ + L       L+ L      V  ++    +VW      V   T+  +I  +R     
Sbjct: 153 DVQLTLRPKEFDLLAYLASHPGQVFTREVLLGQVWG-YDEYVDARTVDVHIRRLRSKLSE 211

Query: 85  VGDTTHSLIATVPRRGFKIHN 105
           + D   +LI T    G++   
Sbjct: 212 I-DAESNLIQTEWGIGYRFIE 231


>UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5
          Length = 232

 Score = 96.7 bits (239), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 9   IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68
           +    +  +       +  + LT      L +L      VV+ ++ F  VW ++      
Sbjct: 140 LILDMDTHECTL---NEKKISLTPKEFSILWVLCSNRGRVVSSEELFHEVWGDKYFTNSN 196

Query: 69  NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104
           NT+  +I  +R       +     I TV   G+KI 
Sbjct: 197 NTVMVHIRHLREKMHGSAEHPK-YIKTVWGVGYKIE 231


>UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2
           Tax=Bacillales RepID=C4L703_EXISA
          Length = 229

 Score = 96.7 bits (239), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 19  ISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISII 78
             V+     + LT      L+  L     +++++  FT+VW E       NT+  +I  +
Sbjct: 145 TEVYVNGERLELTAKEVGLLACFLRNPNRILSKETLFTQVWGES-FFGSDNTVMVHIRRL 203

Query: 79  RRGFRAVGDTTHSLIATVPRRGFKIH 104
           R        +  + I TV   G+++ 
Sbjct: 204 REKV-EPNPSEPTYIKTVKGLGYRLT 228


>UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus
           RepID=YVRH_BACSU
          Length = 237

 Score = 96.7 bits (239), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 5/102 (4%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
           D   F P++ +LI        V  +    + L    E    V+++   + +VW       
Sbjct: 137 DYFTFSPQNAELIV---GGEAVACSAQLLQLLQYFCEHPNVVLSKDQIYEKVWG-YPSYG 192

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108
             NT+  +I  +R        +    I TV   G++   +  
Sbjct: 193 DNNTVMVHIRKLREKIER-DPSNPEYIVTVRGLGYRFIPNPE 233


>UniRef50_B5VUJ9 Two component transcriptional regulator, winged helix family n=1
           Tax=Arthrospira maxima CS-328 RepID=B5VUJ9_SPIMA
          Length = 419

 Score = 96.7 bits (239), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 45/147 (30%), Gaps = 5/147 (3%)

Query: 11  FWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNT 70
             P   ++         + +     + L L L     + ++     R+W  +       T
Sbjct: 150 LNPASGQITCC---GQILKVNRKEYQILELFLRHPRQMFSRDKIGDRLWTLDDELPTDAT 206

Query: 71  LYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIK 130
           +  +I  IRR     G    +LI T   RG+ +    NI+       +D           
Sbjct: 207 INSHIRSIRRKLEQAGIN--NLIQTHYGRGYCLDPVYNIETQSAKGLSDPPKEMLDSMAA 264

Query: 131 VNAGYKESIGGAKNFNNKILKHIKSHL 157
                        +   +  KHI++ L
Sbjct: 265 NIWQELMVANARLHGEIEHRKHIEARL 291


>UniRef50_A7B4Z9 Putative uncharacterized protein n=2 Tax=Ruminococcus
           RepID=A7B4Z9_RUMGN
          Length = 236

 Score = 96.7 bits (239), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 5/98 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            N+  +P+ RK   V  + + + LT      L LL++    V +++  + +VW + G   
Sbjct: 144 KNLSLYPQSRK---VEVSGIELPLTMHEYDILYLLIQNPQKVYSREHLYEQVW-KGGYYG 199

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIH 104
             NT+  ++S +R+  +   D   S I TV   GFK+ 
Sbjct: 200 EDNTVNVHVSNLRKKIQKA-DKEESYIKTVWGIGFKLE 236


>UniRef50_A4C7M7 TolB domain protein n=1 Tax=Pseudoalteromonas tunicata D2
           RepID=A4C7M7_9GAMM
          Length = 689

 Score = 96.7 bits (239), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 29/254 (11%), Positives = 71/254 (27%), Gaps = 47/254 (18%)

Query: 6   NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65
             + +  P    ++   N +    L       L  L    P++V ++     VW+  G  
Sbjct: 9   IGSYQINPLENTVV---NQEQTNSLQPKFIEVLVFLASQHPNIVTREQIINAVWDGNG-Y 64

Query: 66  VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125
           V    L   I  +R+       T    I T+ + G+++    + Q               
Sbjct: 65  VGEKALTNAIWHLRKTLVD-KPTQQEYIETIRKTGYRLLYQPHYQE-------------- 109

Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQPKP---- 181
                + +   ES+   + +    +K + +   M    +IG +   +   +  P      
Sbjct: 110 -----LESQLAESLLIKQWYAKWPIKWLSAIAFMGVFILIGLFVGLFSRPSVAPTYGDPE 164

Query: 182 ------------------FFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKT-RILDSGI 222
                              +  +            + + +   +   +   +  +    I
Sbjct: 165 LLTQYPGRELFPAMSEDGRYLLFSWRKMDRDTDLYLKDLSQPSVPPKNITNSEFVESRPI 224

Query: 223 NCKKHPWLYFPLAK 236
               +  +Y+   K
Sbjct: 225 WSSDNQTIYYYRKK 238


>UniRef50_B1XM84 Two-component response regulator n=8 Tax=Cyanobacteria
           RepID=B1XM84_SYNP2
          Length = 241

 Score = 96.7 bits (239), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 4   IINDNIEFWPEHRKLISV----HNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVW 59
           +   ++      R++        ++   + LT      L  L+     V+ ++     VW
Sbjct: 137 LFFGDLILDLNTRQVWRSPGQSSDSPRPIELTVKEFELLKYLMSHPQQVLTREQILENVW 196

Query: 60  EEEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI 107
             E  +  +N +   I  +R    A G     LI TV   G+ +  D 
Sbjct: 197 GNE-FQGESNVIEVYIRYLRLKIEAKG--QKRLIQTVRGVGYVLKKDP 241


>UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16
           RepID=Q5WGW1_BACSK
          Length = 228

 Score = 96.7 bits (239), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 8   NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
           ++E   + R++ +       + LT      L  L      V  +++ +  VW  +G    
Sbjct: 133 DVEIDIKGRRVFAR---GEQISLTAKEFELLLFLANHPGRVFTKEELYAAVWNGDGF--D 187

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
           + T+  ++  +R   +  G      I TV   G+K   
Sbjct: 188 SRTVTVHVKNVRHKLKD-GTKHPKYIETVWGVGYKFIG 224


>UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales
           RepID=Q67MV1_SYMTH
          Length = 229

 Score = 96.3 bits (238), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 5/101 (4%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            ++   P  R+      A   + LT      L LL      V  +Q+    VW       
Sbjct: 134 GDLVLHPRQRR---AEVAGRPLELTAREYDLLELLARHPGVVYTRQELLDLVWG-YDFAG 189

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDI 107
              T+  ++  IR        +    + T    G+ +  + 
Sbjct: 190 DERTVDVHVRRIREKLEE-DPSRPRYLRTKWGVGYYLEAEP 229


>UniRef50_C0A842 Response regulator receiver protein n=5 Tax=Bacteria
           RepID=C0A842_9BACT
          Length = 263

 Score = 96.3 bits (238), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 1/115 (0%)

Query: 15  HRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGM-RVPTNTLYQ 73
           + +   V  A   + LT      LS L     + V++      +W E        N +  
Sbjct: 143 NLETRLVTRAGRTIDLTPREFDLLSYLSLHQGEAVSRDQLAREIWRENNRATPIDNVIDV 202

Query: 74  NISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPA 128
           +I+ +RR           L+ T+   G+ + +  +       S       +A P 
Sbjct: 203 HIARLRRKIDEASPGAEKLLHTLRGLGYMLRSSASSAVSSSASPRAPSETSANPE 257


>UniRef50_B7GTW3 Response regulator receiver protein n=6 Tax=Bifidobacteriaceae
           RepID=B7GTW3_BIFLI
          Length = 266

 Score = 96.3 bits (238), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 7/100 (7%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            ++                  + L       L  L++    V  +      VW       
Sbjct: 141 GDLIVDTNGYT---ASLHGRPIDLAYKEFELLKYLVQHPGRVFTRAQLLQEVWG-YDYYG 196

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
            T T+  +I  +R      G     LI TV   G++    
Sbjct: 197 GTRTVDVHIRRLRAKL---GGEYEHLIGTVRNVGYRFDPP 233


>UniRef50_Q1MMK4 Putative transcriptional regulator n=1 Tax=Rhizobium leguminosarum
           bv. viciae 3841 RepID=Q1MMK4_RHIL3
          Length = 954

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 27/155 (17%), Positives = 59/155 (38%), Gaps = 9/155 (5%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            +  F P  + L+     ++ + + + A   L  L+     VV++ + F   W    + V
Sbjct: 15  GDCRFIPARQLLLHR---EVPIRVGSRAIDLLHALVRRPGIVVSKDELFRAAWPN--VFV 69

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAP 126
             + L  NI+++RR    V +   + IATVP RG++    + +      ++    +    
Sbjct: 70  DESNLKVNIAVLRRALAQV-EPDLTCIATVPGRGYRFVAPLRVLGVADEAA---LSDAVR 125

Query: 127 PAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLS 161
                       IG  +   +      ++ L+ + 
Sbjct: 126 GISGELPAPPALIGRDEAMADLAGALAETRLLTIV 160


>UniRef50_B5JD22 Response regulator receiver domain protein n=1 Tax=Verrucomicrobiae
           bacterium DG1235 RepID=B5JD22_9BACT
          Length = 239

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 6/100 (6%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            ++      R+   V      V LTT     L  L+ +   V+ +      VW       
Sbjct: 146 GDLVVNLSTRE---VRRDGELVELTTREFNLLEYLMRSPGRVLTRTQILEHVWG-YDFDP 201

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
            TN +   +  +R+   A  D    LI TV   G+++  +
Sbjct: 202 STNVVDVCVQRLRKKVDAGHDV--HLIETVRGAGYRMRKE 239


>UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24
           Tax=Bacteria RepID=A8F5W8_THELT
          Length = 263

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 5/105 (4%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
             I+   +E   E  +   V   D  V LT      L  L E    V ++     ++W  
Sbjct: 160 KKIVAKGLEIDVERYE---VKVHDQKVSLTPLEFELLRFLAENEGKVFSRDVLLDKLWG- 215

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
                 T T+  +I  +R        +    I TV  +G+K  + 
Sbjct: 216 YDYYGDTRTVDVHIRRLRTKIEE-DPSNPKYIITVRGKGYKFRDP 259


>UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC
           700122 RepID=D0WIB8_9ACTN
          Length = 244

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 8   NIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVP 67
           ++    +   L   H  D  + LT    R LSL +     V  +Q  F   W EE     
Sbjct: 154 DLTLDLDACVL---HRGDEPLDLTPVEFRMLSLFMSHPGRVFTKQQIFEEGWGEE-YVAS 209

Query: 68  TNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
            N +   IS +R           + IATV   G+++  
Sbjct: 210 GNNVMVGISKLRAKLSD---DPGAYIATVRGLGYRMEA 244


>UniRef50_D0MIF5 Two component transcriptional regulator, winged helix family n=1
           Tax=Rhodothermus marinus DSM 4252 RepID=D0MIF5_RHOM4
          Length = 231

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 3/93 (3%)

Query: 21  VHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLYQNISIIRR 80
           V   +  + L       L  L     +V+++     +VW +    V  NT+   +S +R+
Sbjct: 142 VRVGEYVLPLRPKEYDLLRFLARHPGEVLSRTRIAEQVWGDP-FYVSDNTIDVTVSGLRQ 200

Query: 81  GFRAVGDTTHSLIATVPRRGFKIHNDINIQNHV 113
                       I TV   G+ +  + +     
Sbjct: 201 KLSEATPALQ--IETVRGVGYALRLEPSATETP 231


>UniRef50_C7MMC5 Response regulator with CheY-like receiver domain protein and
           winged-helix DNA-binding domain protein n=2 Tax=Bacteria
           RepID=C7MMC5_CRYCD
          Length = 271

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 3/136 (2%)

Query: 13  PEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTNTLY 72
               +   V  A     LT    R LSLL+     +V ++     +W      +  NTL 
Sbjct: 139 SLDAECCRVSFAGKQADLTKNELRILSLLMRNAGKIVPRERIQEELW-NSDEFIDDNTLT 197

Query: 73  QNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNAPPAIKVN 132
            N+S +R     +G      I T    G+      +  +    S+  +   +A       
Sbjct: 198 VNVSHLRHTLSTIG--ADDFIRTKRGIGYSFEVAPSESSKSSYSTELSQLSHADETGCQA 255

Query: 133 AGYKESIGGAKNFNNK 148
             YK    G  + +  
Sbjct: 256 MDYKSPQSGCSHLDAS 271


>UniRef50_B9L1T3 Phosphate regulatory protein n=1 Tax=Thermomicrobium roseum DSM
           5159 RepID=B9L1T3_THERP
          Length = 253

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 9   IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68
           + F  EHR +         V L       L+ L+E    V  +Q+    VW ++   V  
Sbjct: 151 VIFRDEHRVVYR----GREVHLAPREFALLTALVERAGRVCTRQELLDLVWGQD--VVDL 204

Query: 69  NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVI 114
             +  +I  IR           +LI TV   G++   ++   +   
Sbjct: 205 RNVDVHIHRIREALG-GEPDGSNLIRTVHGIGYRFVPELAAMDETN 249


>UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5
           Tax=Bacillales RepID=YKOG_BACSU
          Length = 228

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 38/101 (37%), Gaps = 6/101 (5%)

Query: 3   WIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEE 62
           ++  D++    + R+   V   D  V LT      L  +L+    V+ ++   + VW   
Sbjct: 132 FLTYDDLRVNEKTRE---VRRGDKEVELTPREFDLLVYMLKHPQQVLTREQILSSVWG-F 187

Query: 63  GMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKI 103
                TN +   I  IR+           LI T+   G+ I
Sbjct: 188 DYIGDTNVVDVYIRYIRKKLDY--PYEKQLIHTIRGVGYAI 226


>UniRef50_C6HXQ3 Two component transcriptional regulator, winged helix family n=1
           Tax=Leptospirillum ferrodiazotrophum RepID=C6HXQ3_9BACT
          Length = 269

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 16/102 (15%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
             +    +  +++     +  + +T    R L  L+     V  +++  + +W E    V
Sbjct: 173 GELIVDTDRHEVV---WQEKRIQVTPLEFRILVHLVRDPGKVYPREELMSLLWGEH-WEV 228

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN 108
             + L  +I  +R+      +   + I TV   G++I   ++
Sbjct: 229 EDHNLSVHIHGLRKKLARP-EDDRTPIETVRGVGYRIRETLS 269


>UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes
           RepID=Q65F19_BACLD
          Length = 242

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 5/107 (4%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
           +   F P+  +LI        V  +    + L    +    V+++   + +VW       
Sbjct: 140 ERFIFHPDFAELIV---DGETVSCSAQLLQLLQYFCDHPNRVLSKDQIYEKVWGVPS-YG 195

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHV 113
            +NT+  +I  +R        ++   I T+   G+K   +   +   
Sbjct: 196 DSNTVMVHIRKLREKIEK-DPSSPEYIVTIRGLGYKFVPNPARKESE 241


>UniRef50_B8ESP8 Transcriptional regulator domain protein n=4 Tax=Rhizobiales
           RepID=B8ESP8_METSB
          Length = 522

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 28/150 (18%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 1   MYWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWE 60
           M ++  D  E      +L       + + +       L  L+E+   V  +++   RVW 
Sbjct: 1   MIYLFED-FELDTARVEL---RTNGVAIAIEPQVFALLCFLVESRDRVATKEEIVARVW- 55

Query: 61  EEGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDA 120
             G  +  + +   I   RR     G     LI T+   GF+   D+ +    I S    
Sbjct: 56  -NGRVISDSAIASRIKSARRALGDDGGAQR-LIRTIHGIGFRFVADVRLAATRIESIA-- 111

Query: 121 HTHNAPPAIKVNAGYKESIGGAKNFNNKIL 150
            T    P    +   + S         ++L
Sbjct: 112 PTAETAPDTDRSQAVETSRPSIAVLPFRLL 141


>UniRef50_Q1MK68 Putative adenylate cyclase n=1 Tax=Rhizobium leguminosarum bv.
           viciae 3841 RepID=Q1MK68_RHIL3
          Length = 522

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 34/169 (20%), Positives = 66/169 (39%), Gaps = 17/169 (10%)

Query: 4   IINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEG 63
           I+ND +    E   L         + L   A   L  L++    +V++ +    VW   G
Sbjct: 25  ILNDKVVVDLEGETLRL--ENGDAIALRPQAFAVLRHLVQNANRLVSKAELLEAVWG--G 80

Query: 64  MRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTH 123
             V  ++L Q I  IRR     GD  ++++ATV RRG+++  +           +D    
Sbjct: 81  AAVTDDSLVQCIHEIRRAL---GDERYAVLATVSRRGYRLSLE----------RSDESAL 127

Query: 124 NAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYW 172
             P    +             F + +++ I ++L  +    + A ++ +
Sbjct: 128 GGPSIAVLPFATMSGGEPNDYFADGLVEDIITNLSKIPGLFVIARNSSF 176


>UniRef50_B1KA17 Transcriptional regulator, winged helix family n=8 Tax=Burkholderia
           RepID=B1KA17_BURCC
          Length = 973

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 28/152 (18%), Positives = 53/152 (34%), Gaps = 9/152 (5%)

Query: 6   NDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMR 65
              +    E R +        ++ +   A   L +L  A   VV++ D    VW   G+ 
Sbjct: 4   IGTLSVDFEQRDI---RRHGASLRIGARALDILEVLHRASGSVVSKDDIMDAVWP--GLI 58

Query: 66  VPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDINIQNHVINSSTDAHTHNA 125
           V  N L  +++ +R+   A    +  LI TVP RG+ +    +    ++ +         
Sbjct: 59  VEENRLQVHVATLRKALGA----SRDLIKTVPGRGYLLVASASPGPDLVPAGEAPAVAVP 114

Query: 126 PPAIKVNAGYKESIGGAKNFNNKILKHIKSHL 157
           P    +      S+       +  +  I   L
Sbjct: 115 PAVAALPDACALSLLPPLVGRDAEIAQIVDML 146


>UniRef50_B8FQS3 Two component transcriptional regulator, winged helix family n=3
           Tax=Clostridiales RepID=B8FQS3_DESHD
          Length = 226

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 32/99 (32%), Gaps = 8/99 (8%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
             I   P       V      V L       L LL+E    +V ++    R+W       
Sbjct: 134 GGISLDPYRGT---VSVDGRVVELAPKEYALLKLLMENAGKIVTRETLLARIWG-YDFSG 189

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
               +  +I  +R+      +     I TV + G+++  
Sbjct: 190 NDRVVDNHIKKLRQTLGKGAEQ----IKTVVKSGYRLEE 224


>UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2
           Tax=Chloroflexi RepID=A9AYH1_HERA2
          Length = 238

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 8/100 (8%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            ++   P    L  V      + LT      L LLL       ++      +W  +    
Sbjct: 144 GDLVLDPH---LHIVALRQQELDLTPTEFAILDLLLRNPGRAFSRNYLLDTIWG-QSYVG 199

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
              ++   +  +R+     GD     I TV   G+++  +
Sbjct: 200 GDRSVDNAMLRLRKKLADFGDA----IETVWGLGYRLQAE 235


>UniRef50_Q2C4S0 Putative uncharacterized protein n=1 Tax=Photobacterium sp. SKA34
           RepID=Q2C4S0_9GAMM
          Length = 262

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 95/265 (35%), Gaps = 22/265 (8%)

Query: 2   YWIINDNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEE 61
            + I  N+ F      L    N +   VL    ++ L +LL    ++V ++      W  
Sbjct: 4   NYKI-KNVTFCSNRAVL---SNGEKQQVLNFTEAKLLEILLSKANEIVLKETLKEFAW-- 57

Query: 62  EGMRVPTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHNDIN--IQNHVINSSTD 119
           +   V  ++L ++I+ +RR   A       LI T+PR G+K  +     + N   +    
Sbjct: 58  QHTVVTDSSLTKSIAKLRRAL-AFFFEDEELIITIPRVGYKFVSHDVEPVANVDTSIEES 116

Query: 120 AHTHNAPPAIKVNAGYKESIGGAKNFNNKILKHIKSHLIMLSAFVIGAYSAYWLWNNNQP 179
             T +          YKE     ++  +K+L  +   LI  S F     +   L      
Sbjct: 117 LITKDDLTGNVQLTDYKEKNKFKQSVCSKVLLTLSILLIAGSLF-----NFLRLIPTKNE 171

Query: 180 KPFFKDYKTVAEINGCHFNVTEDTIDGLKEFDKYKTRILDSGINC-------KKHPWLYF 232
           +   + Y   A  +G  F+ T  T  G++   K    +     NC         H  + +
Sbjct: 172 QVIAEGYHITALTSG-GFSHTVITRKGIELDPKLSFLLSQQKCNCLFFVDKISDHFNISY 230

Query: 233 PLAKSSPGMIVMACNKNYNQHEVAN 257
              K++ G   +   KN  +    N
Sbjct: 231 FDPKNAKGRSFILDEKNLVEKLRVN 255


>UniRef50_B9YAL6 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM
           12042 RepID=B9YAL6_9FIRM
          Length = 269

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 10  EFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPTN 69
            F      L           LT    + L LLLE    VV+++    ++W      V  N
Sbjct: 180 VFNLADASL---SKDGRQCELTKNEFKILQLLLENKNKVVSREKIMLKLW-NNDCFVDEN 235

Query: 70  TLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
           TL  N++ +RR    +G      I T    G+++H 
Sbjct: 236 TLTVNVNRLRRKMEQLGI--DDCIETRKGLGYQLHA 269


>UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1
           Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD
          Length = 234

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 5/97 (5%)

Query: 9   IEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRVPT 68
           +E     R++ +       V LT      L+LL      V +++     +W  E      
Sbjct: 142 LEIDLLRRRVTAR---GEQVELTAREFEVLALLASNPGRVYSREQIMDHLWGGE-FFGEP 197

Query: 69  NTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHN 105
            +   +I  +R+            I TV   G++   
Sbjct: 198 RSADVHIQHLRQKIE-PDPKNPRYIQTVRGMGYRFAE 233


>UniRef50_A5UQY1 Two component transcriptional regulator, winged helix family n=6
           Tax=Chloroflexi (class) RepID=A5UQY1_ROSS1
          Length = 227

 Score = 95.2 bits (235), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 32/100 (32%), Gaps = 6/100 (6%)

Query: 7   DNIEFWPEHRKLISVHNADLNVVLTTPASRCLSLLLEAFPDVVAQQDFFTRVWEEEGMRV 66
            ++     H            + LT      L  L+      +++Q     VW      V
Sbjct: 132 GDLVLDLRHHT---ARRGTRPLDLTPTEWNLLEYLMRNAGQALSRQQILDHVW-SYDHDV 187

Query: 67  PTNTLYQNISIIRRGFRAVGDTTHSLIATVPRRGFKIHND 106
               +   I+ +RR   A G+     I TV   G+++   
Sbjct: 188 QPQMVDVYIAYLRRKLNASGE--RDPIVTVRGVGYRLEAS 225


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.314    0.130    0.356 

Lambda     K      H
   0.267   0.0400    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,376,982,360
Number of Sequences: 3077464
Number of extensions: 54268993
Number of successful extensions: 179347
Number of sequences better than 1.0e-01: 250
Number of HSP's better than  0.1 without gapping: 2876
Number of HSP's successfully gapped in prelim test: 2671
Number of HSP's that attempted gapping in prelim test: 170216
Number of HSP's gapped (non-prelim): 5664
length of query: 269
length of database: 1,040,396,356
effective HSP length: 126
effective length of query: 143
effective length of database: 652,635,892
effective search space: 93326932556
effective search space used: 93326932556
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 92 (40.1 bits)
