BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (162 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P38392 Superinfection exclusion protein B n=14 Tax=Esch... 333 2e-90 UniRef50_P03762 Superinfection exclusion protein B n=24 Tax=root... 53 4e-06 UniRef50_C4U3B8 Putative uncharacterized protein n=1 Tax=Yersini... 47 2e-04 UniRef50_Q93E27 LygC n=2 Tax=Salmonella enterica subsp. enterica... 47 3e-04 UniRef50_C4TU60 Superinfection exclusion protein B n=1 Tax=Yersi... 45 0.001 UniRef50_D2TXH6 Superinfection exclusion protein B of phage n=1 ... 43 0.004 >UniRef50_P38392 Superinfection exclusion protein B n=14 Tax=Escherichia coli RepID=SIEB_ECOLI Length = 162 Score = 333 bits (853), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 162/162 (100%), Positives = 162/162 (100%) Query: 1 MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS 60 MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS Sbjct: 1 MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS 60 Query: 61 FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKK 120 FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKK Sbjct: 61 FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKK 120 Query: 121 LERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR 162 LERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR Sbjct: 121 LERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR 162 >UniRef50_P03762 Superinfection exclusion protein B n=24 Tax=root RepID=SIEB_LAMBD Length = 183 Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 40/150 (26%), Positives = 67/150 (44%), Gaps = 11/150 (7%) Query: 2 LDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFSF 61 +D L ++F+NEPLER MY I+I+ L L P + N IP ++ + VFA +F Sbjct: 5 MDPLVILGRVFSNEPLERTMYMIVIWVGLLLLSPDNWPEYVNERIGIPHVWHVFVFALAF 64 Query: 62 VVAISFSRLRAHIQKHYSLLPEQR-----------VLLRLSEKEIAVFKDFLKTGNLIIT 110 +AI+ RL A Y ++ V+ L+E++ V L G + Sbjct: 65 SLAINVHRLSAIASARYKRFKLRKRIKMQNDKVRSVIQNLTEEQSMVLCAALNEGRKYVV 124 Query: 111 SPCRNPVMKKLERKGIIQHQSDSANCSYYL 140 + + P + +L G++ N + L Sbjct: 125 TSKQFPYISELIELGVLNKTFSRWNGKHIL 154 >UniRef50_C4U3B8 Putative uncharacterized protein n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U3B8_YERKR Length = 175 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 39/141 (27%), Positives = 62/141 (43%), Gaps = 17/141 (12%) Query: 1 MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS 60 ML T L K F + E+ M T++I+ + L +P F NA IP+ QI FA + Sbjct: 1 MLSSLTILAKSFIEKSSEQFMVTVVIWSVILIFVPDNFRDLINAKIGIPYALQICSFAVA 60 Query: 61 FVVAISFSRLRAHIQKHYSLLPE--------------QRVLLRLSEKEIAVFKDFLKTGN 106 F + + L+ Q +LLP+ RV+ +L+++E + L N Sbjct: 61 FTITLI---LKYIFQIALALLPDVCDRHRASGKAKKINRVIDQLTDEERYLLSFCLAHSN 117 Query: 107 LIITSPCRNPVMKKLERKGII 127 + N V + L KGI+ Sbjct: 118 RQVIKKINNHVARSLVSKGIL 138 >UniRef50_Q93E27 LygC n=2 Tax=Salmonella enterica subsp. enterica serovar Enteritidis RepID=Q93E27_SALEN Length = 173 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 36/169 (21%), Positives = 73/169 (43%), Gaps = 21/169 (12%) Query: 8 LLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS------- 60 ++K + + + M T+ +F L + IP++ T A +++P+ QI FA + Sbjct: 8 IVKFLIGKSVGQFMLTVALFFLIIIFIPRDITELIEARSDLPYAVQIFSFAVAYLIVLIL 67 Query: 61 ------FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCR 114 FV A+ + R ++ + L LS +++ + + FLKT + + Sbjct: 68 KVTGYFFVSALPLCQRRGRAKRML------KTLNSLSTEQLFLLEPFLKTHSPTFRASWD 121 Query: 115 NPVMKKLERKGIIQHQSDSANCSYYL--VTEKYSHFMKLFWNSRSRRFN 161 NP L + GI++ + + + +Y M WN ++RF+ Sbjct: 122 NPDADALVKAGIVRPAGSCIDGVSVMFKIEPEYESLMLSTWNPCTKRFD 170 >UniRef50_C4TU60 Superinfection exclusion protein B n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TU60_YERKR Length = 178 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 5/96 (5%) Query: 8 LLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFSFVVAISF 67 + K+F +EP+ ++MY +I + L + +P FT + + IP+ Q+ +FA +FV+ + Sbjct: 9 IAKIFGSEPVVKVMYVLIGWCLLILFMPARFTESIYEKSNIPFAGQLCLFALAFVIVDAV 68 Query: 68 SRLRAHIQKHY---SLLPEQRVLLRLSEKEIAVFKD 100 R +KH +++ E+ + + +IA+ +D Sbjct: 69 QRGMNKWKKHQEKIAMIDEKN--KQAQQAKIAIIRD 102 >UniRef50_D2TXH6 Superinfection exclusion protein B of phage n=1 Tax=Arsenophonus nasoniae RepID=D2TXH6_9ENTR Length = 167 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/121 (31%), Positives = 62/121 (51%), Gaps = 10/121 (8%) Query: 17 LERLMYTIIIFGLTLWLIPKEFTVAFNAYT-EI---PWLFQIIVFAFSFVVAISFSRLRA 72 L RL+Y +IIF L +++ P N+ + EI WL+ + F S+V+A S L Sbjct: 16 LNRLIYMLIIFVLLIFITPASIKDWINSSSPEIFSSYWLY-FVFFLVSYVIAQLISFLTV 74 Query: 73 HIQKHYSLLPE----QRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKKLERKGIIQ 128 ++ + L E +L L+ EI + K +++G I+ P +N +K L RKGII Sbjct: 75 FTKRRFRNLIECPNRAAILNTLTHDEIDLLKHIVRSGE-IVELPTQNETVKGLIRKGIIA 133 Query: 129 H 129 + Sbjct: 134 Y 134 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P38392 Superinfection exclusion protein B n=14 Tax=Esch... 203 2e-51 UniRef50_Q93E27 LygC n=2 Tax=Salmonella enterica subsp. enterica... 168 6e-41 UniRef50_P03762 Superinfection exclusion protein B n=24 Tax=root... 162 3e-39 UniRef50_C4U3B8 Putative uncharacterized protein n=1 Tax=Yersini... 132 4e-30 UniRef50_C4TU60 Superinfection exclusion protein B n=1 Tax=Yersi... 103 2e-21 Sequences not found previously or not previously below threshold: UniRef50_D2TXH6 Superinfection exclusion protein B of phage n=1 ... 43 0.003 CONVERGED! >UniRef50_P38392 Superinfection exclusion protein B n=14 Tax=Escherichia coli RepID=SIEB_ECOLI Length = 162 Score = 203 bits (515), Expect = 2e-51, Method: Composition-based stats. Identities = 162/162 (100%), Positives = 162/162 (100%) Query: 1 MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS 60 MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS Sbjct: 1 MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS 60 Query: 61 FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKK 120 FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKK Sbjct: 61 FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKK 120 Query: 121 LERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR 162 LERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR Sbjct: 121 LERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR 162 >UniRef50_Q93E27 LygC n=2 Tax=Salmonella enterica subsp. enterica serovar Enteritidis RepID=Q93E27_SALEN Length = 173 Score = 168 bits (425), Expect = 6e-41, Method: Composition-based stats. Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 21/176 (11%) Query: 1 MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS 60 M + ++K + + + M T+ +F L + IP++ T A +++P+ QI FA + Sbjct: 1 MSETALVIVKFLIGKSVGQFMLTVALFFLIIIFIPRDITELIEARSDLPYAVQIFSFAVA 60 Query: 61 -------------FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNL 107 FV A+ + R ++ + L LS +++ + + FLKT + Sbjct: 61 YLIVLILKVTGYFFVSALPLCQRRGRAKRML------KTLNSLSTEQLFLLEPFLKTHSP 114 Query: 108 IITSPCRNPVMKKLERKGIIQHQSDSANCSYYL--VTEKYSHFMKLFWNSRSRRFN 161 + NP L + GI++ + + + +Y M WN ++RF+ Sbjct: 115 TFRASWDNPDADALVKAGIVRPAGSCIDGVSVMFKIEPEYESLMLSTWNPCTKRFD 170 >UniRef50_P03762 Superinfection exclusion protein B n=24 Tax=root RepID=SIEB_LAMBD Length = 183 Score = 162 bits (411), Expect = 3e-39, Method: Composition-based stats. Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 13/167 (7%) Query: 2 LDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFSF 61 +D L ++F+NEPLER MY I+I+ L L P + N IP ++ + VFA +F Sbjct: 5 MDPLVILGRVFSNEPLERTMYMIVIWVGLLLLSPDNWPEYVNERIGIPHVWHVFVFALAF 64 Query: 62 VVAISFSRLRAHIQKHYSLLPEQR-----------VLLRLSEKEIAVFKDFLKTGNLIIT 110 +AI+ RL A Y ++ V+ L+E++ V L G + Sbjct: 65 SLAINVHRLSAIASARYKRFKLRKRIKMQNDKVRSVIQNLTEEQSMVLCAALNEGRKYVV 124 Query: 111 SPCRNPVMKKLERKGIIQHQSDSANCSYYL--VTEKYSHFMKLFWNS 155 + + P + +L G++ N + L + + Y + ++ Sbjct: 125 TSKQFPYISELIELGVLNKTFSRWNGKHILFPIEDIYWTELVASYDP 171 >UniRef50_C4U3B8 Putative uncharacterized protein n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U3B8_YERKR Length = 175 Score = 132 bits (332), Expect = 4e-30, Method: Composition-based stats. Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 21/175 (12%) Query: 1 MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS 60 ML T L K F + E+ M T++I+ + L +P F NA IP+ QI FA + Sbjct: 1 MLSSLTILAKSFIEKSSEQFMVTVVIWSVILIFVPDNFRDLINAKIGIPYALQICSFAVA 60 Query: 61 FVVAISFSRLRAHIQKHYSLLPE--------------QRVLLRLSEKEIAVFKDFLKTGN 106 F + + L+ Q +LLP+ RV+ +L+++E + L N Sbjct: 61 FTITLI---LKYIFQIALALLPDVCDRHRASGKAKKINRVIDQLTDEERYLLSFCLAHSN 117 Query: 107 LIITSPCRNPVMKKLERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFN 161 + N V + L KGI+ + + ++ +W +R++ Sbjct: 118 RQVIKKINNHVARSLVSKGILFPPAFIPKGNSEIIF----TVSLDYWPYLQKRWD 168 >UniRef50_C4TU60 Superinfection exclusion protein B n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4TU60_YERKR Length = 178 Score = 103 bits (256), Expect = 2e-21, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 5/96 (5%) Query: 8 LLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFSFVVAISF 67 + K+F +EP+ ++MY +I + L + +P FT + + IP+ Q+ +FA +FV+ + Sbjct: 9 IAKIFGSEPVVKVMYVLIGWCLLILFMPARFTESIYEKSNIPFAGQLCLFALAFVIVDAV 68 Query: 68 SRLRAHIQKHY---SLLPEQRVLLRLSEKEIAVFKD 100 R +KH +++ E+ + + +IA+ +D Sbjct: 69 QRGMNKWKKHQEKIAMIDEKN--KQAQQAKIAIIRD 102 >UniRef50_D2TXH6 Superinfection exclusion protein B of phage n=1 Tax=Arsenophonus nasoniae RepID=D2TXH6_9ENTR Length = 167 Score = 43.2 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 8/124 (6%) Query: 11 LFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTE---IPWLFQIIVFAFSFVVAISF 67 L RL+Y +IIF L +++ P N+ + + + F S+V+A Sbjct: 10 FLQGITLNRLIYMLIIFVLLIFITPASIKDWINSSSPEIFSSYWLYFVFFLVSYVIAQLI 69 Query: 68 SRLRAHIQKHYSLLPE----QRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKKLER 123 S L ++ + L E +L L+ EI + K +++G I+ P +N +K L R Sbjct: 70 SFLTVFTKRRFRNLIECPNRAAILNTLTHDEIDLLKHIVRSGE-IVELPTQNETVKGLIR 128 Query: 124 KGII 127 KGII Sbjct: 129 KGII 132 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.318 0.130 0.326 Lambda K H 0.267 0.0398 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 511,688,011 Number of Sequences: 3077464 Number of extensions: 16214938 Number of successful extensions: 59833 Number of sequences better than 1.0e-01: 8 Number of HSP's better than 0.1 without gapping: 9 Number of HSP's successfully gapped in prelim test: 5 Number of HSP's that attempted gapping in prelim test: 59817 Number of HSP's gapped (non-prelim): 14 length of query: 162 length of database: 1,040,396,356 effective HSP length: 118 effective length of query: 44 effective length of database: 677,255,604 effective search space: 29799246576 effective search space used: 29799246576 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.3 bits) S2: 87 (38.2 bits)