Phyre 2 alignment of P38392 with c1htrP_

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Job Description | P38392
Confidence | 46.27% | Date | Thu Jan 5 11:58:06 GMT 2012
Rank | 1 | Aligned Residues | 27
% Identity | 26% | Template | c1htrP_
PDB info | PDB header:aspartyl protease | Chain: P: PDB Molecule:progastricsin (pro segment); | PDBTitle: crystal and molecular structures of human progastricsin at 1.622 angstroms resolution
Resolution | 1.62 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 89 | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | R | L | S | E | K | E | I | A | V | F | K | D | F | L | K | T | G | N | L | I | I | T | S | P | C | R | N
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | R | E | T | M | K | E | K | G | L | L | G | E | F | L | R | T | H | K | Y | D | P | A | W | K | Y | R | F
Template Known Secondary structure |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  | T | T |  |  |  |  | G | G | G | G | G |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 14 | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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