BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (162 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P38392 Superinfection exclusion protein B n=14 Tax=Esch...   203   2e-51
UniRef50_Q93E27 LygC n=2 Tax=Salmonella enterica subsp. enterica...   168   6e-41
UniRef50_P03762 Superinfection exclusion protein B n=24 Tax=root...   162   3e-39
UniRef50_C4U3B8 Putative uncharacterized protein n=1 Tax=Yersini...   132   4e-30
UniRef50_C4TU60 Superinfection exclusion protein B n=1 Tax=Yersi...   103   2e-21
UniRef50_D2TXH6 Superinfection exclusion protein B of phage n=1 ...    43   0.003

>UniRef50_P38392 Superinfection exclusion protein B n=14 Tax=Escherichia coli
           RepID=SIEB_ECOLI
          Length = 162

 Score =  203 bits (515), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 162/162 (100%), Positives = 162/162 (100%)

Query: 1   MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS 60
           MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS
Sbjct: 1   MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS 60

Query: 61  FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKK 120
           FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKK
Sbjct: 61  FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKK 120

Query: 121 LERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR 162
           LERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR
Sbjct: 121 LERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR 162


>UniRef50_Q93E27 LygC n=2 Tax=Salmonella enterica subsp. enterica serovar
           Enteritidis RepID=Q93E27_SALEN
          Length = 173

 Score =  168 bits (425), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 21/176 (11%)

Query: 1   MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS 60
           M +    ++K    + + + M T+ +F L +  IP++ T    A +++P+  QI  FA +
Sbjct: 1   MSETALVIVKFLIGKSVGQFMLTVALFFLIIIFIPRDITELIEARSDLPYAVQIFSFAVA 60

Query: 61  -------------FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNL 107
                        FV A+   + R   ++        + L  LS +++ + + FLKT + 
Sbjct: 61  YLIVLILKVTGYFFVSALPLCQRRGRAKRML------KTLNSLSTEQLFLLEPFLKTHSP 114

Query: 108 IITSPCRNPVMKKLERKGIIQHQSDSANCSYYL--VTEKYSHFMKLFWNSRSRRFN 161
              +   NP    L + GI++      +    +  +  +Y   M   WN  ++RF+
Sbjct: 115 TFRASWDNPDADALVKAGIVRPAGSCIDGVSVMFKIEPEYESLMLSTWNPCTKRFD 170


>UniRef50_P03762 Superinfection exclusion protein B n=24 Tax=root RepID=SIEB_LAMBD
          Length = 183

 Score =  162 bits (411), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 13/167 (7%)

Query: 2   LDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFSF 61
           +D    L ++F+NEPLER MY I+I+   L L P  +    N    IP ++ + VFA +F
Sbjct: 5   MDPLVILGRVFSNEPLERTMYMIVIWVGLLLLSPDNWPEYVNERIGIPHVWHVFVFALAF 64

Query: 62  VVAISFSRLRAHIQKHYSLLPEQR-----------VLLRLSEKEIAVFKDFLKTGNLIIT 110
            +AI+  RL A     Y     ++           V+  L+E++  V    L  G   + 
Sbjct: 65  SLAINVHRLSAIASARYKRFKLRKRIKMQNDKVRSVIQNLTEEQSMVLCAALNEGRKYVV 124

Query: 111 SPCRNPVMKKLERKGIIQHQSDSANCSYYL--VTEKYSHFMKLFWNS 155
           +  + P + +L   G++       N  + L  + + Y   +   ++ 
Sbjct: 125 TSKQFPYISELIELGVLNKTFSRWNGKHILFPIEDIYWTELVASYDP 171


>UniRef50_C4U3B8 Putative uncharacterized protein n=1 Tax=Yersinia kristensenii ATCC
           33638 RepID=C4U3B8_YERKR
          Length = 175

 Score =  132 bits (332), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 21/175 (12%)

Query: 1   MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS 60
           ML   T L K F  +  E+ M T++I+ + L  +P  F    NA   IP+  QI  FA +
Sbjct: 1   MLSSLTILAKSFIEKSSEQFMVTVVIWSVILIFVPDNFRDLINAKIGIPYALQICSFAVA 60

Query: 61  FVVAISFSRLRAHIQKHYSLLPE--------------QRVLLRLSEKEIAVFKDFLKTGN 106
           F + +    L+   Q   +LLP+               RV+ +L+++E  +    L   N
Sbjct: 61  FTITLI---LKYIFQIALALLPDVCDRHRASGKAKKINRVIDQLTDEERYLLSFCLAHSN 117

Query: 107 LIITSPCRNPVMKKLERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFN 161
             +     N V + L  KGI+   +     +  ++          +W    +R++
Sbjct: 118 RQVIKKINNHVARSLVSKGILFPPAFIPKGNSEIIF----TVSLDYWPYLQKRWD 168


>UniRef50_C4TU60 Superinfection exclusion protein B n=1 Tax=Yersinia kristensenii
           ATCC 33638 RepID=C4TU60_YERKR
          Length = 178

 Score =  103 bits (256), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 5/96 (5%)

Query: 8   LLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFSFVVAISF 67
           + K+F +EP+ ++MY +I + L +  +P  FT +    + IP+  Q+ +FA +FV+  + 
Sbjct: 9   IAKIFGSEPVVKVMYVLIGWCLLILFMPARFTESIYEKSNIPFAGQLCLFALAFVIVDAV 68

Query: 68  SRLRAHIQKHY---SLLPEQRVLLRLSEKEIAVFKD 100
            R     +KH    +++ E+    +  + +IA+ +D
Sbjct: 69  QRGMNKWKKHQEKIAMIDEKN--KQAQQAKIAIIRD 102


>UniRef50_D2TXH6 Superinfection exclusion protein B of phage n=1 Tax=Arsenophonus
           nasoniae RepID=D2TXH6_9ENTR
          Length = 167

 Score = 43.2 bits (100), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 8/124 (6%)

Query: 11  LFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTE---IPWLFQIIVFAFSFVVAISF 67
                 L RL+Y +IIF L +++ P       N+ +      +    + F  S+V+A   
Sbjct: 10  FLQGITLNRLIYMLIIFVLLIFITPASIKDWINSSSPEIFSSYWLYFVFFLVSYVIAQLI 69

Query: 68  SRLRAHIQKHYSLLPE----QRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKKLER 123
           S L    ++ +  L E      +L  L+  EI + K  +++G  I+  P +N  +K L R
Sbjct: 70  SFLTVFTKRRFRNLIECPNRAAILNTLTHDEIDLLKHIVRSGE-IVELPTQNETVKGLIR 128

Query: 124 KGII 127
           KGII
Sbjct: 129 KGII 132


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P38392 Superinfection exclusion protein B n=14 Tax=Esch...   191   5e-48
UniRef50_P03762 Superinfection exclusion protein B n=24 Tax=root...   170   1e-41
UniRef50_Q93E27 LygC n=2 Tax=Salmonella enterica subsp. enterica...   166   3e-40
UniRef50_C4U3B8 Putative uncharacterized protein n=1 Tax=Yersini...   161   8e-39
UniRef50_C4TU60 Superinfection exclusion protein B n=1 Tax=Yersi...   102   3e-21

Sequences not found previously or not previously below threshold:

UniRef50_D2TXH6 Superinfection exclusion protein B of phage n=1 ...    43   0.004


CONVERGED!
>UniRef50_P38392 Superinfection exclusion protein B n=14 Tax=Escherichia coli
           RepID=SIEB_ECOLI
          Length = 162

 Score =  191 bits (486), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 162/162 (100%), Positives = 162/162 (100%)

Query: 1   MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS 60
           MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS
Sbjct: 1   MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS 60

Query: 61  FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKK 120
           FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKK
Sbjct: 61  FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKK 120

Query: 121 LERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR 162
           LERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR
Sbjct: 121 LERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR 162


>UniRef50_P03762 Superinfection exclusion protein B n=24 Tax=root RepID=SIEB_LAMBD
          Length = 183

 Score =  170 bits (430), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 13/167 (7%)

Query: 2   LDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFSF 61
           +D    L ++F+NEPLER MY I+I+   L L P  +    N    IP ++ + VFA +F
Sbjct: 5   MDPLVILGRVFSNEPLERTMYMIVIWVGLLLLSPDNWPEYVNERIGIPHVWHVFVFALAF 64

Query: 62  VVAISFSRLRAHIQKHYSLLPEQR-----------VLLRLSEKEIAVFKDFLKTGNLIIT 110
            +AI+  RL A     Y     ++           V+  L+E++  V    L  G   + 
Sbjct: 65  SLAINVHRLSAIASARYKRFKLRKRIKMQNDKVRSVIQNLTEEQSMVLCAALNEGRKYVV 124

Query: 111 SPCRNPVMKKLERKGIIQHQSDSANCSYYL--VTEKYSHFMKLFWNS 155
           +  + P + +L   G++       N  + L  + + Y   +   ++ 
Sbjct: 125 TSKQFPYISELIELGVLNKTFSRWNGKHILFPIEDIYWTELVASYDP 171


>UniRef50_Q93E27 LygC n=2 Tax=Salmonella enterica subsp. enterica serovar
           Enteritidis RepID=Q93E27_SALEN
          Length = 173

 Score =  166 bits (419), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 37/176 (21%), Positives = 75/176 (42%), Gaps = 21/176 (11%)

Query: 1   MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS 60
           M +    ++K    + + + M T+ +F L +  IP++ T    A +++P+  QI  FA +
Sbjct: 1   MSETALVIVKFLIGKSVGQFMLTVALFFLIIIFIPRDITELIEARSDLPYAVQIFSFAVA 60

Query: 61  -------------FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNL 107
                        FV A+   + R   ++        + L  LS +++ + + FLKT + 
Sbjct: 61  YLIVLILKVTGYFFVSALPLCQRRGRAKRML------KTLNSLSTEQLFLLEPFLKTHSP 114

Query: 108 IITSPCRNPVMKKLERKGIIQHQSDSANCSYYL--VTEKYSHFMKLFWNSRSRRFN 161
              +   NP    L + GI++      +    +  +  +Y   M   WN  ++RF+
Sbjct: 115 TFRASWDNPDADALVKAGIVRPAGSCIDGVSVMFKIEPEYESLMLSTWNPCTKRFD 170


>UniRef50_C4U3B8 Putative uncharacterized protein n=1 Tax=Yersinia kristensenii ATCC
           33638 RepID=C4U3B8_YERKR
          Length = 175

 Score =  161 bits (407), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 21/175 (12%)

Query: 1   MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS 60
           ML   T L K F  +  E+ M T++I+ + L  +P  F    NA   IP+  QI  FA +
Sbjct: 1   MLSSLTILAKSFIEKSSEQFMVTVVIWSVILIFVPDNFRDLINAKIGIPYALQICSFAVA 60

Query: 61  FVVAISFSRLRAHIQKHYSLLPE--------------QRVLLRLSEKEIAVFKDFLKTGN 106
           F + +    L+   Q   +LLP+               RV+ +L+++E  +    L   N
Sbjct: 61  FTITLI---LKYIFQIALALLPDVCDRHRASGKAKKINRVIDQLTDEERYLLSFCLAHSN 117

Query: 107 LIITSPCRNPVMKKLERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFN 161
             +     N V + L  KGI+   +     +  ++          +W    +R++
Sbjct: 118 RQVIKKINNHVARSLVSKGILFPPAFIPKGNSEIIF----TVSLDYWPYLQKRWD 168


>UniRef50_C4TU60 Superinfection exclusion protein B n=1 Tax=Yersinia kristensenii
           ATCC 33638 RepID=C4TU60_YERKR
          Length = 178

 Score =  102 bits (255), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 53/96 (55%), Gaps = 5/96 (5%)

Query: 8   LLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFSFVVAISF 67
           + K+F +EP+ ++MY +I + L +  +P  FT +    + IP+  Q+ +FA +FV+  + 
Sbjct: 9   IAKIFGSEPVVKVMYVLIGWCLLILFMPARFTESIYEKSNIPFAGQLCLFALAFVIVDAV 68

Query: 68  SRLRAHIQKHY---SLLPEQRVLLRLSEKEIAVFKD 100
            R     +KH    +++ E+    +  + +IA+ +D
Sbjct: 69  QRGMNKWKKHQEKIAMIDEKN--KQAQQAKIAIIRD 102


>UniRef50_D2TXH6 Superinfection exclusion protein B of phage n=1 Tax=Arsenophonus
           nasoniae RepID=D2TXH6_9ENTR
          Length = 167

 Score = 42.8 bits (99), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/124 (27%), Positives = 57/124 (45%), Gaps = 8/124 (6%)

Query: 11  LFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTE---IPWLFQIIVFAFSFVVAISF 67
                 L RL+Y +IIF L +++ P       N+ +      +    + F  S+V+A   
Sbjct: 10  FLQGITLNRLIYMLIIFVLLIFITPASIKDWINSSSPEIFSSYWLYFVFFLVSYVIAQLI 69

Query: 68  SRLRAHIQKHYSLLPE----QRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKKLER 123
           S L    ++ +  L E      +L  L+  EI + K  +++G  I+  P +N  +K L R
Sbjct: 70  SFLTVFTKRRFRNLIECPNRAAILNTLTHDEIDLLKHIVRSGE-IVELPTQNETVKGLIR 128

Query: 124 KGII 127
           KGII
Sbjct: 129 KGII 132


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.317    0.127    0.309 

Lambda     K      H
   0.267   0.0390    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 380,681,958
Number of Sequences: 3077464
Number of extensions: 8748747
Number of successful extensions: 47027
Number of sequences better than 1.0e-01: 6
Number of HSP's better than  0.1 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 47005
Number of HSP's gapped (non-prelim): 14
length of query: 162
length of database: 1,040,396,356
effective HSP length: 118
effective length of query: 44
effective length of database: 677,255,604
effective search space: 29799246576
effective search space used: 29799246576
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.3 bits)
S2: 87 (38.2 bits)
