17/01/2012 07:05:46 : INFO  : Run start: Tue Jan 17 07:05:46 GMT 2012
17/01/2012 07:05:46 : INFO  : Initialised job
17/01/2012 07:05:46 : INFO  : Renaming log file 'phyre2_20120117_070546.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/32ae6d22fe9febba/phyre_20120117_070546.log'
17/01/2012 07:05:46 : INFO  : Initialised job:
Sequence
>batch____
MLDVFTPLLKLFANEPLERLMYTIIIFGLTLWLIPKEFTVAFNAYTEIPWLFQIIVFAFS
FVVAISFSRLRAHIQKHYSLLPEQRVLLRLSEKEIAVFKDFLKTGNLIITSPCRNPVMKK
LERKGIIQHQSDSANCSYYLVTEKYSHFMKLFWNSRSRRFNR

17/01/2012 07:05:46 : INFO  : Checked sequence
17/01/2012 07:05:46 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 07:05:46 : INFO  : PSI-BLAST 3 iterations
17/01/2012 07:06:25 : INFO  : PSI-BLAST 5 iterations
17/01/2012 07:06:58 : INFO  : Finished PSI-BLAST
17/01/2012 07:06:58 : INFO  : Running Buildali to generate a3m file
17/01/2012 07:07:59 : INFO  : Converting to HMM
17/01/2012 07:07:59 : INFO  : Calibrating HMM
17/01/2012 07:08:03 : INFO  : Searching HMM database
17/01/2012 07:11:10 : INFO  : Finished buildali
17/01/2012 07:11:10 : INFO  : Predicting secondary structure
17/01/2012 07:11:10 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 07:11:10 : INFO  : Predicting Disordered regions
17/01/2012 07:11:10 : INFO  : Predicted Disorder (Disopred)
17/01/2012 07:11:10 : INFO  : Running memsat_svm check
17/01/2012 07:12:26 : INFO  : Running memsat_svm full
17/01/2012 07:17:00 : INFO  : Predicted Transmembrane (memsat_svm) ID '32ae6d22fe9febba'
17/01/2012 07:17:00 : INFO  : Initialising fold library search
17/01/2012 07:17:00 : INFO  : Initialised search input
17/01/2012 07:17:00 : INFO  : Building Ensemble models
17/01/2012 07:17:00 : INFO  : Building hh.c1htrP_.model.1.pdb
17/01/2012 07:17:00 : INFO  : Building c1htrP_.1.pdb
17/01/2012 07:17:00 : INFO  : Building c2wa1A_.2.pdb
17/01/2012 07:17:01 : INFO  : Building d2d1ha1.3.pdb
17/01/2012 07:17:01 : INFO  : Building c1hsjA_.4.pdb
17/01/2012 07:17:01 : INFO  : Building d2frha1.5.pdb
17/01/2012 07:17:02 : INFO  : Building d2etha1.6.pdb
17/01/2012 07:17:02 : INFO  : Building d1stza1.7.pdb
17/01/2012 07:17:02 : INFO  : Building d1sfxa_.8.pdb
17/01/2012 07:17:02 : INFO  : Building d1jhfa1.9.pdb
17/01/2012 07:17:03 : INFO  : Building c2px2B_.10.pdb
17/01/2012 07:17:03 : INFO  : Building d1u61a_.11.pdb
17/01/2012 07:17:03 : INFO  : Building c3ctaA_.12.pdb
17/01/2012 07:17:03 : INFO  : Building d1lnwa_.13.pdb
17/01/2012 07:17:04 : INFO  : Building c1stzB_.14.pdb
17/01/2012 07:17:04 : INFO  : Building c2colA_.15.pdb
17/01/2012 07:17:04 : INFO  : Building d1s58a_.16.pdb
17/01/2012 07:17:05 : INFO  : Building d1ub9a_.17.pdb
17/01/2012 07:17:05 : INFO  : Building c1ykuB_.18.pdb
17/01/2012 07:17:05 : INFO  : Building d1t3la2.19.pdb
17/01/2012 07:17:06 : INFO  : Building d1p4xa2.20.pdb
17/01/2012 07:17:06 : INFO  : Finished HH model building
17/01/2012 07:17:06 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 07:17:10 : INFO  : html domain output complete ID '32ae6d22fe9febba'
17/01/2012 07:17:42 : WARN  : Failed to run assembler on model
17/01/2012 07:17:42 : WARN  : Failed to add sidechains, using backbone only
17/01/2012 07:24:33 : INFO  : Run end  : Tue Jan 17 07:24:33 GMT 2012
