Phyre 2 Results for P38392

Email | l.a.kelley@imperial.ac.uk
Description | P38392
Date | Thu Jan 5 11:58:06 GMT 2012
Unique Job ID | 32ae6d22fe9febba

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c1htrP_ |
|  | 46.3 | 26 | PDB header:aspartyl protease Chain: P: PDB Molecule:progastricsin (pro segment); PDBTitle: crystal and molecular structures of human progastricsin at 1.622 angstroms resolution
2 | c2wa1A_ |
|  | 38.9 | 14 | PDB header:transferase Chain: A: PDB Molecule:non-structural protein 5; PDBTitle: structure of the methyltransferase domain from modoc virus,2 a flavivirus with no known vector (nkv)
3 | d2d1ha1 |
|  | 35.5 | 16 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:TrmB-like
4 | c1hsjA_ |
|  | 32.3 | 14 | PDB header:transcription/sugar binding protein Chain: A: PDB Molecule:fusion protein consisting of staphylococcus PDBTitle: sarr mbp fusion structure
5 | d2frha1 |
|  | 31.5 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
6 | d2etha1 |
|  | 24.4 | 19 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
7 | d1stza1 |
|  | 22.7 | 27 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Heat-inducible transcription repressor HrcA, N-terminal domain
8 | d1sfxa_ |
|  | 22.5 | 13 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:TrmB-like
9 | d1jhfa1 |
|  | 20.8 | 23 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:LexA repressor, N-terminal DNA-binding domain
10 | c2px2B_ |
|  | 20.5 | 15 | PDB header:transferase Chain: B: PDB Molecule:genome polyprotein [contains: capsid protein c PDBTitle: crystal structure of the murray valley encephalitis virus2 ns5 2'-o methyltransferase domain in complex with sah3 (monoclinic form 1)
11 | d1u61a_ |
|  | 20.3 | 19 | Fold:RNase III domain-like Superfamily:RNase III domain-like Family:RNase III catalytic domain-like
12 | c3ctaA_ |
|  | 19.5 | 19 | PDB header:transferase Chain: A: PDB Molecule:riboflavin kinase; PDBTitle: crystal structure of riboflavin kinase from thermoplasma2 acidophilum
13 | d1lnwa_ |
|  | 18.1 | 14 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
14 | c1stzB_ |
|  | 16.8 | 29 | PDB header:transcription Chain: B: PDB Molecule:heat-inducible transcription repressor hrca homolog; PDBTitle: crystal structure of a hypothetical protein at 2.2 a resolution
15 | c2colA_ |
|  | 16.1 | 17 | PDB header:lyase/metal binding protein Chain: A: PDB Molecule:bifunctional hemolysin-adenylate cyclase; PDBTitle: crystal structure analysis of cyaa/c-cam with pyrophosphate
16 | d1s58a_ |
|  | 15.7 | 33 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP
17 | d1ub9a_ |
|  | 15.6 | 19 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
18 | c1ykuB_ |
|  | 14.8 | 16 | PDB header:unknown function Chain: B: PDB Molecule:hypothetical protein pxo2-61; PDBTitle: crystal structure of a sensor domain homolog
19 | d1t3la2 |
|  | 14.1 | 29 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
20 | d1p4xa2 |
|  | 12.7 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
21 | d2fbha1 |
| not modelled | 12.7 | 20 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
22 | c1z1cA_ |
| not modelled | 12.3 | 24 | PDB header:virus/dna Chain: A: PDB Molecule:coat protein vp2; PDBTitle: structural determinants of tissue tropism and in vivo2 pathogenicity for the parvovirus minute virus of mice
23 | d1nava_ |
| not modelled | 12.3 | 11 | Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain
24 | c3da5A_ |
| not modelled | 11.5 | 42 | PDB header:rna binding protein Chain: A: PDB Molecule:argonaute; PDBTitle: crystal structure of piwi/argonaute/zwille(paz) domain from2 thermococcus thioreducens
25 | c3h8dE_ |
| not modelled | 11.3 | 42 | PDB header:motor protein/signaling protein Chain: E: PDB Molecule:disabled homolog 2; PDBTitle: crystal structure of myosin vi in complex with dab2 peptide
26 | c3u5gK_ |
| not modelled | 11.0 | 21 | PDB header:ribosome Chain: K: PDB Molecule:40s ribosomal protein s10-a; PDBTitle: the structure of the eukaryotic ribosome at 3.0 a resolution
27 | d1mvma_ |
| not modelled | 10.8 | 24 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP
28 | d1k3va_ |
| not modelled | 10.7 | 33 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP
29 | c1k3vA_ |
| not modelled | 10.7 | 33 | PDB header:virus Chain: A: PDB Molecule:capsid protein vp2; PDBTitle: porcine parvovirus capsid
30 | c3cjnA_ |
| not modelled | 10.5 | 15 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: crystal structure of transcriptional regulator, marr family, from2 silicibacter pomeroyi
31 | d2gmga1 |
| not modelled | 10.5 | 24 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:PF0610-like
32 | c3nttA_ |
| not modelled | 10.3 | 18 | PDB header:virus Chain: A: PDB Molecule:capsid protein; PDBTitle: structural insights of adeno-associated virus 5. a gene therapy vector2 for cystic fibrosis
33 | d1hsja1 |
| not modelled | 10.2 | 9 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:MarR-like transcriptional regulators
34 | d1k8ta_ |
| not modelled | 10.0 | 13 | Fold:Adenylylcyclase toxin (the edema factor) Superfamily:Adenylylcyclase toxin (the edema factor) Family:Adenylylcyclase toxin (the edema factor)
35 | c3dkxA_ |
| not modelled | 9.9 | 18 | PDB header:replication Chain: A: PDB Molecule:replication protein repb; PDBTitle: crystal structure of the replication initiator protein2 encoded on plasmid pmv158 (repb), trigonal form, to 2.7 ang3 resolution
36 | c2xzm7_ |
| not modelled | 9.8 | 14 | PDB header:ribosome Chain: 7: PDB Molecule:plectin/s10 domain containing protein; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1
37 | d1c8da_ |
| not modelled | 9.6 | 22 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP
38 | c3kieF_ |
| not modelled | 9.6 | 12 | PDB header:virus Chain: F: PDB Molecule:capsid protein vp1; PDBTitle: crystal structure of adeno-associated virus serotype 3b
39 | d1lp3a_ |
| not modelled | 9.6 | 12 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:ssDNA viruses Family:Parvoviridae-like VP
40 | c2j8pA_ |
| not modelled | 9.1 | 19 | PDB header:nuclear protein Chain: A: PDB Molecule:cleavage stimulation factor 64 kda subunit; PDBTitle: nmr structure of c-terminal domain of human cstf-64
41 | c2g8gA_ |
| not modelled | 9.0 | 12 | PDB header:virus Chain: A: PDB Molecule:capsid; PDBTitle: structurally mapping the diverse phenotype of adeno-2 associated virus serotype 4
42 | c4a5mH_ |
| not modelled | 8.7 | 22 | PDB header:transcription Chain: H: PDB Molecule:uncharacterized hth-type transcriptional regulator yybr; PDBTitle: redox regulator hypr in its oxidized form
43 | c3bjaA_ |
| not modelled | 8.5 | 16 | PDB header:transcription regulator Chain: A: PDB Molecule:transcriptional regulator, marr family, putative; PDBTitle: crystal structure of putative marr-like transcription regulator2 (np_978771.1) from bacillus cereus atcc 10987 at 2.38 a resolution
44 | c2jtvA_ |
| not modelled | 7.9 | 18 | PDB header:structural genomics Chain: A: PDB Molecule:protein of unknown function; PDBTitle: solution structure of protein rpa3401, northeast structural genomics2 consortium target rpt7, ontario center for structural proteomics3 target rp3384
45 | c3pmdA_ |
| not modelled | 7.3 | 16 | PDB header:lipid binding protein Chain: A: PDB Molecule:conserved domain protein; PDBTitle: crystal structure of the sporulation inhibitor pxo1-118 from bacillus2 anthracis
46 | c1xfzA_ |
| not modelled | 7.2 | 13 | PDB header:lyase/metal binding protein Chain: A: PDB Molecule:calmodulin-sensitive adenylate cyclase; PDBTitle: crystal structure of anthrax edema factor (ef) in complex2 with calmodulin in the presence of 1 millimolar3 exogenously added calcium chloride
47 | c1xfuE_ |
| not modelled | 7.2 | 13 | PDB header:lyase/metal binding protein Chain: E: PDB Molecule:calmodulin-sensitive adenylate cyclase; PDBTitle: crystal structure of anthrax edema factor (ef) truncation2 mutant, ef-delta 64 in complex with calmodulin
48 | c2gslE_ |
| not modelled | 7.2 | 15 | PDB header:structural genomics, unknown function Chain: E: PDB Molecule:hypothetical protein; PDBTitle: x-ray crystal structure of protein fn1578 from fusobacterium2 nucleatum. northeast structural genomics consortium target nr1.
49 | d2i9ca1 |
| not modelled | 6.9 | 8 | Fold:alpha-alpha superhelix Superfamily:ARM repeat Family:RPA1889-like
50 | d1bh9b_ |
| not modelled | 6.6 | 33 | Fold:Histone-fold Superfamily:Histone-fold Family:TBP-associated factors, TAFs
51 | d2j5pa1 |
| not modelled | 6.6 | 19 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:FtsK C-terminal domain-like
52 | c2oqgA_ |
| not modelled | 6.5 | 8 | PDB header:transcription Chain: A: PDB Molecule:possible transcriptional regulator, arsr family protein; PDBTitle: arsr-like transcriptional regulator from rhodococcus sp. rha1
53 | d1okra_ |
| not modelled | 6.3 | 17 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Penicillinase repressor
54 | c3obhA_ |
| not modelled | 6.2 | 36 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: x-ray crystal structure of protein sp_0782 (7-79) from streptococcus2 pneumoniae. northeast structural genomics consortium target spr104
55 | d1dmga_ |
| not modelled | 6.2 | 13 | Fold:Ribosomal protein L4 Superfamily:Ribosomal protein L4 Family:Ribosomal protein L4
56 | c2qenA_ |
| not modelled | 6.2 | 14 | PDB header:unknown function Chain: A: PDB Molecule:walker-type atpase; PDBTitle: the walker-type atpase paby2304 of pyrococcus abyssi
57 | d2b50a1 |
| not modelled | 6.1 | 12 | Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain
58 | c3f6oB_ |
| not modelled | 6.1 | 10 | PDB header:transcription regulator Chain: B: PDB Molecule:probable transcriptional regulator, arsr family PDBTitle: crystal structure of arsr family transcriptional regulator,2 rha00566
59 | c2w9yA_ |
| not modelled | 5.9 | 14 | PDB header:lipid transport Chain: A: PDB Molecule:fatty acid/retinol binding protein protein 7, PDBTitle: the structure of the lipid binding protein ce-far-7 from2 caenorhabditis elegans
60 | d1y88a1 |
| not modelled | 5.9 | 23 | Fold:SAM domain-like Superfamily:Rad51 N-terminal domain-like Family:Hypothetical protein AF1548, C-terminal domain
61 | c1fpvA_ |
| not modelled | 5.9 | 22 | PDB header:virus Chain: A: PDB Molecule:feline panleukopenia virus (strain b) viral PDBTitle: structure determination of feline panleukopenia virus empty2 particles
62 | c2b1wA_ |
| not modelled | 5.8 | 17 | PDB header:apoptosis Chain: A: PDB Molecule:caspase recruitment domain protein 4; PDBTitle: solution structure of the nod1 caspase activating and recruitment2 domain
63 | c3g3zA_ |
| not modelled | 5.8 | 20 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, marr family; PDBTitle: the structure of nmb1585, a marr family regulator from neisseria2 meningitidis
64 | d1q3ma_ |
| not modelled | 5.8 | 44 | Fold:GLA-domain Superfamily:GLA-domain Family:GLA-domain
65 | d1q8ha_ |
| not modelled | 5.7 | 44 | Fold:GLA-domain Superfamily:GLA-domain Family:GLA-domain
66 | c1q8hA_ |
| not modelled | 5.7 | 44 | PDB header:metal binding protein Chain: A: PDB Molecule:osteocalcin; PDBTitle: crystal structure of porcine osteocalcin
67 | d2olua1 |
| not modelled | 5.7 | 16 | Fold:Lysozyme-like Superfamily:Lysozyme-like Family:PBP transglycosylase domain-like
68 | d1un2a_ |
| not modelled | 5.6 | 16 | Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:DsbA-like
69 | d1pq9a_ |
| not modelled | 5.4 | 11 | Fold:Nuclear receptor ligand-binding domain Superfamily:Nuclear receptor ligand-binding domain Family:Nuclear receptor ligand-binding domain
70 | c3elkA_ |
| not modelled | 5.3 | 15 | PDB header:transcription regulator Chain: A: PDB Molecule:putative transcriptional regulator ta0346; PDBTitle: crystal structure of putative transcriptional regulator ta0346 from2 thermoplasma acidophilum
71 | c2nyxB_ |
| not modelled | 5.3 | 10 | PDB header:transcription Chain: B: PDB Molecule:probable transcriptional regulatory protein, rv1404; PDBTitle: crystal structure of rv1404 from mycobacterium tuberculosis