Phyre 2 alignment of P38392 with d2j5pa1

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Job Description | P38392
Confidence | 6.63% | Date | Thu Jan 5 11:58:06 GMT 2012
Rank | 51 | Aligned Residues | 32
% Identity | 19% | Template | d2j5pa1
SCOP info | DNA/RNA-binding 3-helical bundle | "Winged helix" DNA-binding domain | FtsK C-terminal domain-like
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 99 | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . | 120 | . | . | . | . | . | . | . | . | . | 130
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | K | D | F | L | K | T | G | N | L | I | I | T | S | P | C | R | N | P | V | . | . | . | . | . | . | . | . | . | . | M | K | K | L | E | R | K | G | I | I | Q | H | Q
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | V | Q | F | V | T | E | K | R | K | A | S | I | S | G | V | Q | R | Q | F | R | I | G | Y | N | R | A | A | R | I | I | E | Q | M | E | A | Q | G | I | V | S | E | Q
Template Known Secondary structure |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | S | B |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 1273 | . | . | . | . | . | . | 1280 | . | . | . | . | . | . | . | . | . | 1290 | . | . | . | . | . | . | . | . | . | 1300 | . | . | . | . | . | . | . | . | . | 1310 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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