Phyre 2 Results for P61887

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P61887
Date | Thu Jan 5 12:07:25 GMT 2012
Unique Job ID | 328adb8f7f6504f8

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1mc3a_
Top template information
Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase
Confidence and coverage
Confidence: | 100.0% | Coverage: | 99%
290 residues ( 99% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | G | I | I | L | A | G | G | S | G | T | R | L | H | P | I | T | R | G | V | S | K | Q | L | L | P | I | Y | D | K | P | M | I | Y | Y | P | L | S | V | L | M | L | A | G | I | R | E | I | L | I | I | T | T | P | E | D | K | G | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | F | Q | R | L | L | G | D | G | S | E | F | G | I | Q | L | E | Y | A | E | Q | P | S | P | D | G | L | A | Q | A | F | I | I | G | E | T | F | L | N | G | E | P | S | C | L | V | L | G | D | N | I | F | F | G | Q | G | F | S | P | K | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | R | H | V | A | A | R | T | E | G | A | T | V | F | G | Y | Q | V | M | D | P | E | R | F | G | V | V | E | F | D | D | N | F | R | A | I | S | L | E | E | K | P | K | Q | P | K | S | N | W | A | V | T | G | L | Y | F | Y | D | S | K | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | V | E | Y | A | K | Q | V | K | P | S | E | R | G | E | L | E | I | T | S | I | N | Q | M | Y | L | E | A | G | N | L | T | V | E | L | L | G | R | G | F | A | W | L | D | T | G | T | H | D | S | L | I | E | A | S | T | F | V | Q | T | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  | ? | ? | ? |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | .
Sequence |  | E | K | R | Q | G | F | K | I | A | C | L | E | E | I | A | W | R | N | G | W | L | D | D | E | G | V | K | R | A | A | S | S | L | A | K | T | G | Y | G | Q | Y | L | L | E | L | L | R | A | R | P | R | Q | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? |  | ? | ? | ? | ? |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1mc3a_ |

### PDB 1mc3 chain A

Region: 1 - 290
Aligned: 290
Modelled: 289
Confidence: 100.0%
Identity: 98%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: glucose-1-phosphate thymidylyltransferase

Phyre2
2 |
| d1h5ra_ |

### PDB 1h5r chain A

Region: 2 - 288
Aligned: 287
Modelled: 287
Confidence: 100.0%
Identity: 66%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: glucose-1-phosphate thymidylyltransferase

Phyre2
3 |
| d1fxoa_ |

### PDB 1fxo chain A

Region: 1 - 289
Aligned: 289
Modelled: 289
Confidence: 100.0%
Identity: 65%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: glucose-1-phosphate thymidylyltransferase

Phyre2
4 |
| d1lvwa_ |

### PDB 1lvw chain A

Region: 1 - 289
Aligned: 289
Modelled: 289
Confidence: 100.0%
Identity: 63%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: glucose-1-phosphate thymidylyltransferase

Phyre2
5 |
| d1iina_ |

### PDB 1iin chain A

Region: 1 - 286
Aligned: 286
Modelled: 286
Confidence: 100.0%
Identity: 64%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: glucose-1-phosphate thymidylyltransferase

Phyre2
6 |
| c2pa4B_ |

### PDB 2pa4 chain B

Region: 1 - 243
Aligned: 241
Modelled: 243
Confidence: 100.0%
Identity: 25%
PDB header:transferase
Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of udp-glucose pyrophosphorylase from corynebacteria2 glutamicum in complex with magnesium and udp-glucose

Phyre2
7 |
| c2ux8G_ |

### PDB 2ux8 chain G

Region: 2 - 243
Aligned: 239
Modelled: 242
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: G: PDB Molecule:glucose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of sphingomonas elodea atcc 31461 glucose-2 1-phosphate uridylyltransferase in complex with glucose-3 1-phosphate.

Phyre2
8 |
| c2e3dB_ |

### PDB 2e3d chain B

Region: 2 - 243
Aligned: 230
Modelled: 242
Confidence: 100.0%
Identity: 25%
PDB header:transferase
Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase;
PDBTitle: crystal structure of e. coli glucose-1-phosphate2 uridylyltransferase

Phyre2
9 |
| c3hl3A_ |

### PDB 3hl3 chain A

Region: 1 - 243
Aligned: 239
Modelled: 243
Confidence: 100.0%
Identity: 46%
PDB header:transferase
Chain: A: PDB Molecule:glucose-1-phosphate thymidylyltransferase;
PDBTitle: 2.76 angstrom crystal structure of a putative glucose-1-phosphate2 thymidylyltransferase from bacillus anthracis in complex with a3 sucrose.

Phyre2
10 |
| c3pnnA_ |

### PDB 3pnn chain A

Region: 1 - 243
Aligned: 239
Modelled: 243
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:conserved domain protein;
PDBTitle: the crystal structure of a glycosyltransferase from porphyromonas2 gingivalis w83

Phyre2
11 |
| c3jukA_ |

### PDB 3juk chain A

Region: 1 - 243
Aligned: 238
Modelled: 242
Confidence: 100.0%
Identity: 26%
PDB header:transferase
Chain: A: PDB Molecule:udp-glucose pyrophosphorylase (galu);
PDBTitle: the crystal structure of udp-glucose pyrophosphorylase complexed with2 udp-glucose

Phyre2
12 |
| c2x5sB_ |

### PDB 2x5s chain B

Region: 1 - 234
Aligned: 229
Modelled: 234
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase;
PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state.

Phyre2
13 |
| c1yp3C_ |

### PDB 1yp3 chain C

Region: 1 - 237
Aligned: 233
Modelled: 237
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small
PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp

Phyre2
14 |
| c2cu2A_ |

### PDB 2cu2 chain A

Region: 1 - 234
Aligned: 226
Modelled: 234
Confidence: 100.0%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:putative mannose-1-phosphate guanylyl transferase;
PDBTitle: crystal structure of mannose-1-phosphate geranyltransferase from2 thermus thermophilus hb8

Phyre2
15 |
| d1yp2a2 |

### PDB 1yp2 chain A domain 2

Region: 3 - 237
Aligned: 231
Modelled: 235
Confidence: 100.0%
Identity: 20%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: glucose-1-phosphate thymidylyltransferase

Phyre2
16 |
| c3brkX_ |

### PDB 3brk chain X

Region: 1 - 237
Aligned: 233
Modelled: 234
Confidence: 100.0%
Identity: 23%
PDB header:transferase
Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase;
PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens

Phyre2
17 |
| c3d98A_ |

### PDB 3d98 chain A

Region: 1 - 244
Aligned: 240
Modelled: 244
Confidence: 100.0%
Identity: 17%
PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form

Phyre2
18 |
| d2cu2a2 |

### PDB 2cu2 chain A domain 2

Region: 1 - 233
Aligned: 225
Modelled: 233
Confidence: 100.0%
Identity: 20%
Fold: Nucleotide-diphospho-sugar transferases
Superfamily: Nucleotide-diphospho-sugar transferases
Family: mannose-1-phosphate guanylyl transferase

Phyre2
19 |
| c1hm8A_ |

### PDB 1hm8 chain A

Region: 3 - 237
Aligned: 224
Modelled: 235
Confidence: 100.0%
Identity: 21%
PDB header:transferase
Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase;
PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a

Phyre2
20 |
| c2qkxA_ |

### PDB 2qkx chain A

Region: 1 - 241
Aligned: 237
Modelled: 241
Confidence: 100.0%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:bifunctional protein glmu;
PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |
57 |
58 |
59 |
60 |
61 |
62 |
63 |
64 |
65 |
66 |
67 |
68 |
69 |
70 |
71 |
72 |
73 |
74 |
75 |
76 |
77 |
78 |
79 |
80 |
81 |
82 |
83 |
84 |
85 |
86 |
87 |
88 |
89 |
90 |
91 |
92 |
93 |
94 |
95 |
96 |
97 |
98 |
99 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1mc3a_ |
|  | 100.0 | 98 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase
2 | d1h5ra_ |
|  | 100.0 | 66 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase
3 | d1fxoa_ |
|  | 100.0 | 65 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase
4 | d1lvwa_ |
|  | 100.0 | 63 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase
5 | d1iina_ |
|  | 100.0 | 64 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase
6 | c2pa4B_ |
|  | 100.0 | 25 | PDB header:transferase Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of udp-glucose pyrophosphorylase from corynebacteria2 glutamicum in complex with magnesium and udp-glucose
7 | c2ux8G_ |
|  | 100.0 | 22 | PDB header:transferase Chain: G: PDB Molecule:glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of sphingomonas elodea atcc 31461 glucose-2 1-phosphate uridylyltransferase in complex with glucose-3 1-phosphate.
8 | c2e3dB_ |
|  | 100.0 | 25 | PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of e. coli glucose-1-phosphate2 uridylyltransferase
9 | c3hl3A_ |
|  | 100.0 | 46 | PDB header:transferase Chain: A: PDB Molecule:glucose-1-phosphate thymidylyltransferase; PDBTitle: 2.76 angstrom crystal structure of a putative glucose-1-phosphate2 thymidylyltransferase from bacillus anthracis in complex with a3 sucrose.
10 | c3pnnA_ |
|  | 100.0 | 18 | PDB header:transferase Chain: A: PDB Molecule:conserved domain protein; PDBTitle: the crystal structure of a glycosyltransferase from porphyromonas2 gingivalis w83
11 | c3jukA_ |
|  | 100.0 | 26 | PDB header:transferase Chain: A: PDB Molecule:udp-glucose pyrophosphorylase (galu); PDBTitle: the crystal structure of udp-glucose pyrophosphorylase complexed with2 udp-glucose
12 | c2x5sB_ |
|  | 100.0 | 21 | PDB header:transferase Chain: B: PDB Molecule:mannose-1-phosphate guanylyltransferase; PDBTitle: crystal structure of t. maritima gdp-mannose2 pyrophosphorylase in apo state.
13 | c1yp3C_ |
|  | 100.0 | 22 | PDB header:transferase Chain: C: PDB Molecule:glucose-1-phosphate adenylyltransferase small PDBTitle: crystal structure of potato tuber adp-glucose2 pyrophosphorylase in complex with atp
14 | c2cu2A_ |
|  | 100.0 | 22 | PDB header:transferase Chain: A: PDB Molecule:putative mannose-1-phosphate guanylyl transferase; PDBTitle: crystal structure of mannose-1-phosphate geranyltransferase from2 thermus thermophilus hb8
15 | d1yp2a2 |
|  | 100.0 | 20 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:glucose-1-phosphate thymidylyltransferase
16 | c3brkX_ |
|  | 100.0 | 23 | PDB header:transferase Chain: X: PDB Molecule:glucose-1-phosphate adenylyltransferase; PDBTitle: crystal structure of adp-glucose pyrophosphorylase from2 agrobacterium tumefaciens
17 | c3d98A_ |
|  | 100.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: crystal structure of glmu from mycobacterium tuberculosis, ligand-free2 form
18 | d2cu2a2 |
|  | 100.0 | 20 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:mannose-1-phosphate guanylyl transferase
19 | c1hm8A_ |
|  | 100.0 | 21 | PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine-1-phosphate uridyltransferase; PDBTitle: crystal structure of s.pneumoniae n-acetylglucosamine-1-phosphate2 uridyltransferase, glmu, bound to acetyl coenzyme a
20 | c2qkxA_ |
|  | 100.0 | 18 | PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: n-acetyl glucosamine 1-phosphate uridyltransferase from mycobacterium2 tuberculosis complex with n-acetyl glucosamine 1-phosphate
21 | c2oi6A_ |
| not modelled | 100.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: e. coli glmu- complex with udp-glcnac, coa and glcn-1-po4
22 | c2ggqA_ |
| not modelled | 100.0 | 31 | PDB header:transferase Chain: A: PDB Molecule:401aa long hypothetical glucose-1-phosphate PDBTitle: complex of hypothetical glucose-1-phosphate thymidylyltransferase from2 sulfolobus tokodaii
23 | c2v0hA_ |
| not modelled | 100.0 | 19 | PDB header:transferase Chain: A: PDB Molecule:bifunctional protein glmu; PDBTitle: characterization of substrate binding and catalysis of the2 potential antibacterial target n-acetylglucosamine-1-3 phosphate uridyltransferase (glmu)
24 | d2oi6a2 |
| not modelled | 100.0 | 18 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase
25 | d1tzfa_ |
| not modelled | 100.0 | 15 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase
26 | d1g97a2 |
| not modelled | 100.0 | 17 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase
27 | c1fwyA_ |
| not modelled | 100.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of n-acetylglucosamine 1-phosphate2 uridyltransferase bound to udp-glcnac
28 | d1jyka_ |
| not modelled | 100.0 | 22 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase
29 | d1vica_ |
| not modelled | 100.0 | 17 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase
30 | c1jylC_ |
| not modelled | 100.0 | 22 | PDB header:transferase Chain: C: PDB Molecule:ctp:phosphocholine cytidylytransferase; PDBTitle: catalytic mechanism of ctp:phosphocholine2 cytidylytransferase from streptococcus pneumoniae (licc)
31 | c3oamD_ |
| not modelled | 100.0 | 20 | PDB header:transferase Chain: D: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: crystal structure of cytidylyltransferase from vibrio cholerae
32 | c2xmhB_ |
| not modelled | 100.0 | 16 | PDB header:transferase Chain: B: PDB Molecule:ctp-inositol-1-phosphate cytidylyltransferase; PDBTitle: the x-ray structure of ctp:inositol-1-phosphate2 cytidylyltransferase from archaeoglobus fulgidus
33 | c2qh5B_ |
| not modelled | 100.0 | 15 | PDB header:isomerase Chain: B: PDB Molecule:mannose-6-phosphate isomerase; PDBTitle: crystal structure of mannose-6-phosphate isomerase from helicobacter2 pylori
34 | c3polA_ |
| not modelled | 100.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: 2.3 angstrom crystal structure of 3-deoxy-manno-octulosonate2 cytidylyltransferase (kdsb) from acinetobacter baumannii.
35 | c3tqdA_ |
| not modelled | 100.0 | 17 | PDB header:transferase Chain: A: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: structure of the 3-deoxy-d-manno-octulosonate cytidylyltransferase2 (kdsb) from coxiella burnetii
36 | d1vh1a_ |
| not modelled | 100.0 | 17 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase
37 | c2xwlB_ |
| not modelled | 100.0 | 15 | PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: crystal structure of ispd from mycobacterium smegmatis in complex2 with ctp and mg
38 | d1h7ea_ |
| not modelled | 100.0 | 16 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase
39 | c2y6pC_ |
| not modelled | 100.0 | 18 | PDB header:transferase Chain: C: PDB Molecule:3-deoxy-manno-octulosonate cytidylyltransferase; PDBTitle: evidence for a two-metal-ion-mechanism in the2 kdo-cytidylyltransferase kdsb
40 | d1i52a_ |
| not modelled | 100.0 | 11 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase
41 | d1vpaa_ |
| not modelled | 99.9 | 16 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase
42 | d1eyra_ |
| not modelled | 99.9 | 12 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase
43 | d1vh3a_ |
| not modelled | 99.9 | 17 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase
44 | d1qwja_ |
| not modelled | 99.9 | 14 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase
45 | c3f1cB_ |
| not modelled | 99.9 | 15 | PDB header:transferase Chain: B: PDB Molecule:putative 2-c-methyl-d-erythritol 4-phosphate PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from listeria monocytogenes
46 | d1w55a1 |
| not modelled | 99.9 | 17 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase
47 | d1e5ka_ |
| not modelled | 99.9 | 20 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Molybdenum cofactor biosynthesis protein MobA
48 | c3okrA_ |
| not modelled | 99.9 | 11 | PDB header:transferase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd)
49 | d2dpwa1 |
| not modelled | 99.9 | 17 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:TTHA0179-like
50 | c2vshB_ |
| not modelled | 99.9 | 15 | PDB header:transferase Chain: B: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate PDBTitle: synthesis of cdp-activated ribitol for teichoic acid2 precursors in streptococcus pneumoniae
51 | c2we9A_ |
| not modelled | 99.9 | 17 | PDB header:unknown function Chain: A: PDB Molecule:moba-related protein; PDBTitle: crystal structure of rv0371c from mycobacterium2 tuberculosis h37rv
52 | c2wawA_ |
| not modelled | 99.9 | 16 | PDB header:unknown function Chain: A: PDB Molecule:moba relate protein; PDBTitle: crystal structure of mycobacterium tuberculosis rv0371c2 homolog from mycobacterium sp. strain jc1
53 | c3ngwA_ |
| not modelled | 99.9 | 13 | PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis protein a PDBTitle: crystal structure of molybdopterin-guanine dinucleotide biosynthesis2 protein a from archaeoglobus fulgidus, northeast structural genomics3 consortium target gr189
54 | d1w77a1 |
| not modelled | 99.8 | 18 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase
55 | c1w57A_ |
| not modelled | 99.8 | 17 | PDB header:transferase Chain: A: PDB Molecule:ispd/ispf bifunctional enzyme; PDBTitle: structure of the bifunctional ispdf from campylobacter2 jejuni containing zn
56 | c2px7A_ |
| not modelled | 99.8 | 13 | PDB header:transferase Chain: A: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate PDBTitle: crystal structure of 2-c-methyl-d-erythritol 4-phosphate2 cytidylyltransferase from thermus thermophilus hb8
57 | c3rsbB_ |
| not modelled | 99.8 | 16 | PDB header:transferase Chain: B: PDB Molecule:adenosylcobinamide-phosphate guanylyltransferase; PDBTitle: structure of the archaeal gtp:adocbi-p guanylyltransferase (coby) from2 methanocaldococcus jannaschii
58 | d1vgwa_ |
| not modelled | 99.8 | 10 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Cytidylytransferase
59 | c3okrC_ |
| not modelled | 99.7 | 13 | PDB header:transferase Chain: C: PDB Molecule:2-c-methyl-d-erythritol 4-phosphate cytidylyltransferase; PDBTitle: structure of mtb apo 2-c-methyl-d-erythritol 4-phosphate2 cytidyltransferase (ispd)
60 | c2e8bA_ |
| not modelled | 99.6 | 16 | PDB header:biosynthetic protein Chain: A: PDB Molecule:probable molybdopterin-guanine dinucleotide biosynthesis PDBTitle: crystal structure of the putative protein (aq1419) from aquifex2 aeolicus vf5
61 | c3d5nB_ |
| not modelled | 99.0 | 23 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:q97w15_sulso; PDBTitle: crystal structure of the q97w15_sulso protein from2 sulfolobus solfataricus. nesg target ssr125.
62 | c3oc9A_ |
| not modelled | 99.0 | 20 | PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of putative udp-n-acetylglucosamine2 pyrophosphorylase from entamoeba histolytica
63 | d1vm8a_ |
| not modelled | 99.0 | 16 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase
64 | d1jv1a_ |
| not modelled | 99.0 | 16 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase
65 | d2icya2 |
| not modelled | 99.0 | 14 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:UDP-glucose pyrophosphorylase
66 | c2yqsA_ |
| not modelled | 98.8 | 19 | PDB header:transferase Chain: A: PDB Molecule:udp-n-acetylglucosamine pyrophosphorylase; PDBTitle: crystal structure of uridine-diphospho-n-acetylglucosamine2 pyrophosphorylase from candida albicans, in the product-binding form
67 | c2q4jB_ |
| not modelled | 98.7 | 15 | PDB header:transferase Chain: B: PDB Molecule:probable utp-glucose-1-phosphate uridylyltransferase 2; PDBTitle: ensemble refinement of the protein crystal structure of gene product2 from arabidopsis thaliana at3g03250, a putative udp-glucose3 pyrophosphorylase
68 | c2i5kB_ |
| not modelled | 98.7 | 19 | PDB header:transferase Chain: B: PDB Molecule:utp--glucose-1-phosphate uridylyltransferase; PDBTitle: crystal structure of ugp1p
69 | c3gueB_ |
| not modelled | 98.6 | 17 | PDB header:transferase Chain: B: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase 2; PDBTitle: crystal structure of udp-glucose phosphorylase from trypanosoma2 brucei, (tb10.389.0330)
70 | c2oefA_ |
| not modelled | 98.5 | 14 | PDB header:transferase Chain: A: PDB Molecule:utp-glucose-1-phosphate uridylyltransferase 2, PDBTitle: open and closed structures of the udp-glucose2 pyrophosphorylase from leishmania major
71 | c3ogzA_ |
| not modelled | 98.5 | 19 | PDB header:transferase Chain: A: PDB Molecule:udp-sugar pyrophosphorylase; PDBTitle: protein structure of usp from l. major in apo-form
72 | c2d7iA_ |
| not modelled | 97.3 | 15 | PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 10; PDBTitle: crsytal structure of pp-galnac-t10 with udp, galnac and mn2+
73 | c1xhbA_ |
| not modelled | 97.1 | 12 | PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 1; PDBTitle: the crystal structure of udp-galnac: polypeptide alpha-n-2 acetylgalactosaminyltransferase-t1
74 | d1xhba2 |
| not modelled | 96.7 | 11 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Polypeptide N-acetylgalactosaminyltransferase 1, N-terminal domain
75 | c2ffuA_ |
| not modelled | 96.6 | 13 | PDB header:transferase Chain: A: PDB Molecule:polypeptide n-acetylgalactosaminyltransferase 2; PDBTitle: crystal structure of human ppgalnact-2 complexed with udp2 and ea2
76 | d1omza_ |
| not modelled | 94.4 | 8 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Exostosin
77 | d2i5ea1 |
| not modelled | 93.9 | 16 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:MM2497-like
78 | c1omxB_ |
| not modelled | 93.8 | 8 | PDB header:transferase Chain: B: PDB Molecule:alpha-1,4-n-acetylhexosaminyltransferase extl2; PDBTitle: crystal structure of mouse alpha-1,4-n-2 acetylhexosaminyltransferase (extl2)
79 | c2z86D_ |
| not modelled | 93.0 | 10 | PDB header:transferase Chain: D: PDB Molecule:chondroitin synthase; PDBTitle: crystal structure of chondroitin polymerase from2 escherichia coli strain k4 (k4cp) complexed with udp-glcua3 and udp
80 | c3cgxA_ |
| not modelled | 90.4 | 14 | PDB header:transferase Chain: A: PDB Molecule:putative nucleotide-diphospho-sugar transferase; PDBTitle: crystal structure of putative nucleotide-diphospho-sugar transferase2 (yp_389115.1) from desulfovibrio desulfuricans g20 at 1.90 a3 resolution
81 | c3f1yC_ |
| not modelled | 89.4 | 17 | PDB header:transferase Chain: C: PDB Molecule:mannosyl-3-phosphoglycerate synthase; PDBTitle: mannosyl-3-phosphoglycerate synthase from rubrobacter xylanophilus
82 | c3ckvA_ |
| not modelled | 88.8 | 14 | PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: crystal structure of a mycobacterial protein
83 | c2qgiA_ |
| not modelled | 87.1 | 6 | PDB header:transferase Chain: A: PDB Molecule:atp synthase subunits region orf 6; PDBTitle: the udp complex structure of the sixth gene product of the f1-atpase2 operon of rhodobacter blasticus
84 | c3bcvA_ |
| not modelled | 82.4 | 16 | PDB header:transferase Chain: A: PDB Molecule:putative glycosyltransferase protein; PDBTitle: crystal structure of a putative glycosyltransferase from bacteroides2 fragilis
85 | d1qg8a_ |
| not modelled | 79.5 | 13 | Fold:Nucleotide-diphospho-sugar transferases Superfamily:Nucleotide-diphospho-sugar transferases Family:Spore coat polysaccharide biosynthesis protein SpsA
86 | d1oxza_ |
| not modelled | 46.5 | 11 | Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain
87 | c1oxzA_ |
| not modelled | 46.5 | 11 | PDB header:membrane protein Chain: A: PDB Molecule:adp-ribosylation factor binding protein gga1; PDBTitle: crystal structure of the human gga1 gat domain
88 | c1nafA_ |
| not modelled | 38.8 | 11 | PDB header:signaling protein, membrane protein Chain: A: PDB Molecule:adp-ribosylation factor binding protein gga1; PDBTitle: crystal structure of the human gga1 gat domain
89 | d1v7za_ |
| not modelled | 34.6 | 13 | Fold:Creatininase Superfamily:Creatininase Family:Creatininase
90 | d1j2jb_ |
| not modelled | 33.9 | 9 | Fold:Spectrin repeat-like Superfamily:GAT-like domain Family:GAT domain
91 | c3lubE_ |
| not modelled | 27.1 | 26 | PDB header:hydrolase Chain: E: PDB Molecule:putative creatinine amidohydrolase; PDBTitle: crystal structure of putative creatinine amidohydrolase2 (yp_211512.1) from bacteroides fragilis nctc 9343 at 2.11 a3 resolution
92 | c3uowB_ |
| not modelled | 22.1 | 25 | PDB header:ligase Chain: B: PDB Molecule:gmp synthetase; PDBTitle: crystal structure of pf10_0123, a gmp synthetase from plasmodium2 falciparum
93 | c3orsD_ |
| not modelled | 19.6 | 19 | PDB header:isomerase,biosynthetic protein Chain: D: PDB Molecule:n5-carboxyaminoimidazole ribonucleotide mutase; PDBTitle: crystal structure of n5-carboxyaminoimidazole ribonucleotide mutase2 from staphylococcus aureus
94 | c3no4A_ |
| not modelled | 18.8 | 12 | PDB header:hydrolase Chain: A: PDB Molecule:creatinine amidohydrolase; PDBTitle: crystal structure of a creatinine amidohydrolase (npun_f1913) from2 nostoc punctiforme pcc 73102 at 2.00 a resolution
95 | d1nksa_ |
| not modelled | 17.9 | 42 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
96 | d1nh9a_ |
| not modelled | 13.7 | 36 | Fold:IF3-like Superfamily:AlbA-like Family:DNA-binding protein AlbA
97 | d3bofa2 |
| not modelled | 13.1 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Homocysteine S-methyltransferase Family:Homocysteine S-methyltransferase
98 | d1rrma_ |
| not modelled | 12.8 | 13 | Fold:Dehydroquinate synthase-like Superfamily:Dehydroquinate synthase-like Family:Iron-containing alcohol dehydrogenase
99 | d2hk6a1 |
| not modelled | 12.1 | 22 | Fold:Chelatase-like Superfamily:Chelatase Family:Ferrochelatase

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0