Job Description P0AE70 Confidence 50.53% Date Thu Jan 5 11:22:39 GMT 2012 Rank 8 Aligned Residues 85 % Identity 19% Template c2l89A_ PDB info PDB header:protein binding Chain: A: PDB Molecule:pwwp domain-containing protein 1; PDBTitle: solution structure of pdp1 pwwp domain reveals its unique binding2 sites for methylated h4k20 and dna Resolution UNK

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		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.			.	.	.	.
Predicted Secondary structure																																																																												.	.
Query SS confidence																																																																												.	.
Query Sequence		D	M	G	D	L	I	W	V	D	F	D	P	T	K	G	S	E	Q	A	G	H	R	P	A	V	V	L	S	P	F	M	Y	N	N	K	T	G	M	C	L	C	V	P	C	T	T	Q	S	K	G	Y	P	F	E	V	V	L	S	G	Q	E	R	D	G	V	A	L	A	D	Q	V	K	S	I	.	.	A	W	R	A
Query Conservation																																																																												.	.
Alig confidence															.	.	.	.	.	.																		.	.	.	.	.	.	.																																.	.
Template Conservation															.	.	.	.	.	.																		.	.	.	.	.	.	.
Template Sequence		N	F	G	D	R	I	L	V	K	A	P	G	Y	.	.	.	.	.	.	P	W	W	P	A	L	L	L	R	R	K	E	T	K	D	S	L	.	.	.	.	.	.	.	N	T	N	S	S	F	N	V	L	Y	K	V	L	F	F	P	D	F	N	F	A	W	V	K	R	N	S	V	K	P	L	L	D	S	E	I	A
Template Known Secondary structure			T	T								S	S	S	.	.	.	.	.	.															S	S	S	.	.	.	.	.	.	.		S	S	S											T	T	T	T							G	G	G
Template Predicted Secondary structure															.	.	.	.	.	.																		.	.	.	.	.	.	.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.							.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80								.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	A	T	K	K	G	T	V	A	P	E	E	L	Q	L	I	K	A	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	F	L	G	S	S	K	R	K	S	K	E	L	I	E	A	Y	E	A	S
Template Known Secondary structure							S	S	S
Template Predicted Secondary structure
Template SS confidence
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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