Phyre 2 Results for Q46843

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Email | l.a.kelley@imperial.ac.uk
Description | Q46843
Date | Thu Jan 5 12:35:09 GMT 2012
Unique Job ID | 3229f96af4375195

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3ld9D_
Top template information
PDB header:transferase Chain: D: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of thymidylate kinase from ehrlichia chaffeensis at2 2.15a resolution
Confidence and coverage
Confidence: | 99.9% | Coverage: | 75%
177 residues ( 75% of your sequence) have been modelled with 99.9% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | N | Q | R | N | M | S | I | I | N | S | T | P | V | R | V | I | A | I | V | G | C | D | G | S | G | K | S | T | L | T | A | S | L | V | N | E | L | A | A | R | M | P | T | E | H | I | Y | L | G | Q | S | S | G | R | I | G | E | W | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? |  |  | ? |  | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | S | Q | L | P | V | I | G | A | P | F | G | R | Y | L | R | S | K | A | A | H | V | H | E | K | P | S | T | P | P | G | N | I | T | A | L | V | I | Y | L | L | S | C | W | R | A | Y | K | F | R | K | M | L | C | K | S | Q | Q | G | F | L
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? | ? |  | ? | ? | ? | ? | ? |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | L | I | T | D | R | Y | P | Q | V | E | V | P | G | F | R | F | D | G | P | Q | L | A | K | T | T | G | G | N | G | W | I | K | M | L | R | Q | R | E | L | K | L | Y | Q | W | M | A | S | Y | L | P | V | L | L | I | R | L | G | I | D | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  | ? | ? |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | .
Sequence |  | Q | T | A | F | A | R | K | P | D | H | Q | L | A | A | L | Q | E | K | I | A | V | T | P | Q | L | T | F | N | G | A | K | I | L | E | L | D | G | R | H | P | A | D | E | I | L | Q | A | S | L | R | A | I | H | A | A | L | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3ld9D_ |

### PDB 3ld9 chain D

Region: 14 - 234
Aligned: 177
Modelled: 192
Confidence: 99.9%
Identity: 15%
PDB header:transferase
Chain: D: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of thymidylate kinase from ehrlichia chaffeensis at2 2.15a resolution

Phyre2
2 |
| d1gsia_ |

### PDB 1gsi chain A

Region: 16 - 228
Aligned: 189
Modelled: 196
Confidence: 99.9%
Identity: 19%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2
3 |
| d4tmka_ |

### PDB 4tmk chain A

Region: 14 - 236
Aligned: 196
Modelled: 208
Confidence: 99.9%
Identity: 16%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2
4 |
| d1tmka_ |

### PDB 1tmk chain A

Region: 14 - 237
Aligned: 189
Modelled: 191
Confidence: 99.9%
Identity: 20%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2
5 |
| d1nn5a_ |

### PDB 1nn5 chain A

Region: 12 - 236
Aligned: 190
Modelled: 190
Confidence: 99.9%
Identity: 19%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2
6 |
| c2w0sB_ |

### PDB 2w0s chain B

Region: 14 - 236
Aligned: 185
Modelled: 186
Confidence: 99.9%
Identity: 20%
PDB header:transferase
Chain: B: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of vaccinia virus thymidylate kinase2 bound to brivudin-5'-monophosphate

Phyre2
7 |
| c3lv8A_ |

### PDB 3lv8 chain A

Region: 15 - 237
Aligned: 194
Modelled: 206
Confidence: 99.9%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:thymidylate kinase;
PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate kinase2 (tmk) from vibrio cholerae o1 biovar eltor str. n16961 in complex3 with tmp, thymidine-5'-diphosphate and adp

Phyre2
8 |
| c2plrB_ |

### PDB 2plr chain B

Region: 14 - 237
Aligned: 183
Modelled: 183
Confidence: 99.9%
Identity: 17%
PDB header:transferase
Chain: B: PDB Molecule:probable thymidylate kinase;
PDBTitle: crystal structure of dtmp kinase (st1543) from sulfolobus tokodaii2 strain7

Phyre2
9 |
| c2pbrB_ |

### PDB 2pbr chain B

Region: 16 - 236
Aligned: 188
Modelled: 200
Confidence: 99.9%
Identity: 19%
PDB header:transferase
Chain: B: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of thymidylate kinase (aq_969) from aquifex aeolicus2 vf5

Phyre2
10 |
| c2ccjA_ |

### PDB 2ccj chain A

Region: 15 - 236
Aligned: 187
Modelled: 190
Confidence: 99.9%
Identity: 18%
PDB header:transferase
Chain: A: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of s. aureus thymidylate kinase complexed2 with thymidine monophosphate

Phyre2
11 |
| c2wwiC_ |

### PDB 2wwi chain C

Region: 10 - 236
Aligned: 192
Modelled: 192
Confidence: 99.9%
Identity: 16%
PDB header:transferase
Chain: C: PDB Molecule:thymidilate kinase, putative;
PDBTitle: plasmodium falciparum thymidylate kinase in complex with2 aztmp and adp

Phyre2
12 |
| d2ocpa1 |

### PDB 2ocp chain A domain 1

Region: 13 - 234
Aligned: 200
Modelled: 201
Confidence: 99.9%
Identity: 15%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2
13 |
| c2z0hA_ |

### PDB 2z0h chain A

Region: 16 - 235
Aligned: 181
Modelled: 182
Confidence: 99.8%
Identity: 23%
PDB header:transferase
Chain: A: PDB Molecule:thymidylate kinase;
PDBTitle: crystal structure of thymidylate kinase in complex with dtdp2 and adp from thermotoga maritima

Phyre2
14 |
| d1p5zb_ |

### PDB 1p5z chain B

Region: 14 - 237
Aligned: 201
Modelled: 219
Confidence: 99.8%
Identity: 16%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2
15 |
| c3tlxA_ |

### PDB 3tlx chain A

Region: 9 - 234
Aligned: 200
Modelled: 211
Confidence: 99.8%
Identity: 16%
PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase 2;
PDBTitle: crystal structure of pf10_0086, adenylate kinase from plasmodium2 falciparum

Phyre2
16 |
| c2qroB_ |

### PDB 2qro chain B

Region: 14 - 237
Aligned: 205
Modelled: 212
Confidence: 99.8%
Identity: 18%
PDB header:transferase
Chain: B: PDB Molecule:deoxycytidine kinase;
PDBTitle: human deoxycytidine kinase damp, udp, mg ion product complex

Phyre2
17 |
| c2rh5B_ |

### PDB 2rh5 chain B

Region: 16 - 232
Aligned: 188
Modelled: 199
Confidence: 99.8%
Identity: 14%
PDB header:transferase
Chain: B: PDB Molecule:adenylate kinase;
PDBTitle: structure of apo adenylate kinase from aquifex aeolicus

Phyre2
18 |
| c2xb4A_ |

### PDB 2xb4 chain A

Region: 17 - 233
Aligned: 167
Modelled: 178
Confidence: 99.8%
Identity: 22%
PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: crystal structures of zinc containing adenylate kinase from2 desulfovibrio gigas

Phyre2
19 |
| c3akyA_ |

### PDB 3aky chain A

Region: 12 - 233
Aligned: 196
Modelled: 197
Confidence: 99.8%
Identity: 12%
PDB header:adenylate kinase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: stability, activity and structure of adenylate kinase2 mutants

Phyre2
20 |
| c2bwjC_ |

### PDB 2bwj chain C

Region: 8 - 234
Aligned: 175
Modelled: 175
Confidence: 99.8%
Identity: 18%
PDB header:transferase
Chain: C: PDB Molecule:adenylate kinase 5;
PDBTitle: structure of adenylate kinase 5

Phyre2
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| d1ls1a2 |

### PDB 1ls1 chain A domain 2

Region: 3 - 47
Aligned: 43
Modelled: 43
Confidence: 98.1%
Identity: 21%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3ld9D_ |
|  | 99.9 | 15 | PDB header:transferase Chain: D: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of thymidylate kinase from ehrlichia chaffeensis at2 2.15a resolution
2 | d1gsia_ |
|  | 99.9 | 19 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
3 | d4tmka_ |
|  | 99.9 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
4 | d1tmka_ |
|  | 99.9 | 20 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
5 | d1nn5a_ |
|  | 99.9 | 19 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
6 | c2w0sB_ |
|  | 99.9 | 20 | PDB header:transferase Chain: B: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of vaccinia virus thymidylate kinase2 bound to brivudin-5'-monophosphate
7 | c3lv8A_ |
|  | 99.9 | 16 | PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate kinase2 (tmk) from vibrio cholerae o1 biovar eltor str. n16961 in complex3 with tmp, thymidine-5'-diphosphate and adp
8 | c2plrB_ |
|  | 99.9 | 17 | PDB header:transferase Chain: B: PDB Molecule:probable thymidylate kinase; PDBTitle: crystal structure of dtmp kinase (st1543) from sulfolobus tokodaii2 strain7
9 | c2pbrB_ |
|  | 99.9 | 19 | PDB header:transferase Chain: B: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of thymidylate kinase (aq_969) from aquifex aeolicus2 vf5
10 | c2ccjA_ |
|  | 99.9 | 18 | PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of s. aureus thymidylate kinase complexed2 with thymidine monophosphate
11 | c2wwiC_ |
|  | 99.9 | 16 | PDB header:transferase Chain: C: PDB Molecule:thymidilate kinase, putative; PDBTitle: plasmodium falciparum thymidylate kinase in complex with2 aztmp and adp
12 | d2ocpa1 |
|  | 99.9 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
13 | c2z0hA_ |
|  | 99.8 | 23 | PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of thymidylate kinase in complex with dtdp2 and adp from thermotoga maritima
14 | d1p5zb_ |
|  | 99.8 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
15 | c3tlxA_ |
|  | 99.8 | 16 | PDB header:transferase Chain: A: PDB Molecule:adenylate kinase 2; PDBTitle: crystal structure of pf10_0086, adenylate kinase from plasmodium2 falciparum
16 | c2qroB_ |
|  | 99.8 | 18 | PDB header:transferase Chain: B: PDB Molecule:deoxycytidine kinase; PDBTitle: human deoxycytidine kinase damp, udp, mg ion product complex
17 | c2rh5B_ |
|  | 99.8 | 14 | PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: structure of apo adenylate kinase from aquifex aeolicus
18 | c2xb4A_ |
|  | 99.8 | 22 | PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structures of zinc containing adenylate kinase from2 desulfovibrio gigas
19 | c3akyA_ |
|  | 99.8 | 12 | PDB header:adenylate kinase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: stability, activity and structure of adenylate kinase2 mutants
20 | c2bwjC_ |
|  | 99.8 | 18 | PDB header:transferase Chain: C: PDB Molecule:adenylate kinase 5; PDBTitle: structure of adenylate kinase 5
21 | d1akya1 |
| not modelled | 99.8 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
22 | c1s3gA_ |
| not modelled | 99.8 | 16 | PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of adenylate kinase from bacillus2 globisporus
23 | d3adka_ |
| not modelled | 99.8 | 20 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
24 | c2eu8B_ |
| not modelled | 99.8 | 16 | PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of a thermostable mutant of bacillus2 subtilis adenylate kinase (q199r)
25 | d1qf9a_ |
| not modelled | 99.8 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
26 | c2ak2A_ |
| not modelled | 99.8 | 14 | PDB header:phosphotransferase Chain: A: PDB Molecule:adenylate kinase isoenzyme-2; PDBTitle: adenylate kinase isoenzyme-2
27 | d1ak2a1 |
| not modelled | 99.8 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
28 | d1p3ja1 |
| not modelled | 99.7 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
29 | d1teva_ |
| not modelled | 99.7 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
30 | d1ukza_ |
| not modelled | 99.7 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
31 | c2ql6H_ |
| not modelled | 99.7 | 17 | PDB header:signaling protein,transferase Chain: H: PDB Molecule:nicotinamide riboside kinase 1; PDBTitle: human nicotinamide riboside kinase (nrk1)
32 | c1zakB_ |
| not modelled | 99.7 | 12 | PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: adenylate kinase from maize in complex with the inhibitor2 p1,p5-bis(adenosine-5'-)pentaphosphate (ap5a)
33 | d1s3ga1 |
| not modelled | 99.7 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
34 | c3cm0A_ |
| not modelled | 99.7 | 18 | PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of adenylate kinase from thermus2 thermophilus hb8
35 | d2ak3a1 |
| not modelled | 99.7 | 19 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
36 | d1zina1 |
| not modelled | 99.7 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
37 | d1zaka1 |
| not modelled | 99.7 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
38 | d1nksa_ |
| not modelled | 99.7 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
39 | c2ar7A_ |
| not modelled | 99.7 | 19 | PDB header:transferase Chain: A: PDB Molecule:adenylate kinase 4; PDBTitle: crystal structure of human adenylate kinase 4, ak4
40 | c2jatA_ |
| not modelled | 99.7 | 16 | PDB header:transferase Chain: A: PDB Molecule:deoxyguanosine kinase; PDBTitle: structure of deoxyadenosine kinase from m.mycoides with2 products dcmp and a flexible dcdp bound
41 | d1knqa_ |
| not modelled | 99.7 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Gluconate kinase
42 | c3be4A_ |
| not modelled | 99.7 | 9 | PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of cryptosporidium parvum adenylate kinase cgd5_3360
43 | c1ankA_ |
| not modelled | 99.7 | 11 | PDB header:transferase(phosphotransferase) Chain: A: PDB Molecule:adenylate kinase; PDBTitle: the closed conformation of a highly flexible protein: the2 structure of e. coli adenylate kinase with bound amp and3 amppnp
44 | d1e4va1 |
| not modelled | 99.7 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
45 | d1khta_ |
| not modelled | 99.6 | 12 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
46 | c2ak3B_ |
| not modelled | 99.6 | 15 | PDB header:transferase (phosphotransferase) Chain: B: PDB Molecule:adenylate kinase isoenzyme-3; PDBTitle: the three-dimensional structure of the complex between2 mitochondrial matrix adenylate kinase and its substrate3 amp at 1.85 angstroms resolution
47 | d1q3ta_ |
| not modelled | 99.6 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
48 | d2cdna1 |
| not modelled | 99.6 | 21 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
49 | c3t61A_ |
| not modelled | 99.6 | 15 | PDB header:transferase Chain: A: PDB Molecule:gluconokinase; PDBTitle: crystal structure of a gluconokinase from sinorhizobium meliloti 1021
50 | d1p6xa_ |
| not modelled | 99.6 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
51 | d2vp4a1 |
| not modelled | 99.6 | 12 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
52 | c2vp4D_ |
| not modelled | 99.6 | 16 | PDB header:transferase Chain: D: PDB Molecule:deoxynucleoside kinase; PDBTitle: structural studies of nucleoside analog and feedback2 inhibitor binding to drosophila melanogaster3 multisubstrate deoxyribonucleoside kinase
53 | d1ki9a_ |
| not modelled | 99.6 | 9 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
54 | c1lw7A_ |
| not modelled | 99.6 | 13 | PDB header:transferase Chain: A: PDB Molecule:transcriptional regulator nadr; PDBTitle: nadr protein from haemophilus influenzae
55 | c3akcA_ |
| not modelled | 99.6 | 17 | PDB header:transferase Chain: A: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of cmp kinase in complex with cdp and adp from2 thermus thermophilus hb8
56 | d1ckea_ |
| not modelled | 99.6 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
57 | c3gmtB_ |
| not modelled | 99.6 | 15 | PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of adenylate kinase from burkholderia pseudomallei
58 | d1m7ga_ |
| not modelled | 99.5 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Adenosine-5'phosphosulfate kinase (APS kinase)
59 | c2h92C_ |
| not modelled | 99.5 | 13 | PDB header:transferase Chain: C: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of staphylococcus aureus cytidine2 monophosphate kinase in complex with cytidine-5'-3 monophosphate
60 | d1lw7a2 |
| not modelled | 99.5 | 12 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
61 | d1e2ka_ |
| not modelled | 99.5 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
62 | c2yvuA_ |
| not modelled | 99.5 | 17 | PDB header:transferase Chain: A: PDB Molecule:probable adenylyl-sulfate kinase; PDBTitle: crystal structure of ape1195
63 | d1e6ca_ |
| not modelled | 99.5 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK)
64 | c2gksB_ |
| not modelled | 99.5 | 15 | PDB header:transferase Chain: B: PDB Molecule:bifunctional sat/aps kinase; PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile
65 | c2rhmD_ |
| not modelled | 99.5 | 16 | PDB header:unknown function Chain: D: PDB Molecule:putative kinase; PDBTitle: crystal structure of a putative kinase (caur_3907) from chloroflexus2 aurantiacus j-10-fl at 1.70 a resolution
66 | c3nwjB_ |
| not modelled | 99.5 | 17 | PDB header:transferase Chain: B: PDB Molecule:atsk2; PDBTitle: crystal structure of shikimate kinase from arabidopsis thaliana2 (atsk2)
67 | c1ueiB_ |
| not modelled | 99.4 | 15 | PDB header:transferase Chain: B: PDB Molecule:uridine-cytidine kinase 2; PDBTitle: crystal structure of human uridine-cytidine kinase 22 complexed with a feedback-inhibitor, utp
68 | d1m8pa3 |
| not modelled | 99.4 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ATP sulfurylase C-terminal domain
69 | c1qhiA_ |
| not modelled | 99.4 | 17 | PDB header:transferase Chain: A: PDB Molecule:protein (thymidine kinase); PDBTitle: herpes simplex virus type-i thymidine kinase complexed with2 a novel non-substrate inhibitor, 9-(4-hydroxybutyl)-n2-3 phenylguanine
70 | c2pt5D_ |
| not modelled | 99.4 | 14 | PDB header:transferase Chain: D: PDB Molecule:shikimate kinase; PDBTitle: crystal structure of shikimate kinase (aq_2177) from aquifex aeolicus2 vf5
71 | d2bdta1 |
| not modelled | 99.4 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Atu3015-like
72 | c1m8pB_ |
| not modelled | 99.4 | 14 | PDB header:transferase Chain: B: PDB Molecule:sulfate adenylyltransferase; PDBTitle: crystal structure of p. chrysogenum atp sulfurylase in the t-state
73 | d1uj2a_ |
| not modelled | 99.4 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase
74 | d1vhta_ |
| not modelled | 99.3 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
75 | c1zuiA_ |
| not modelled | 99.3 | 19 | PDB header:transferase Chain: A: PDB Molecule:shikimate kinase; PDBTitle: structural basis for shikimate-binding specificity of helicobacter2 pylori shikimate kinase
76 | c2f6rA_ |
| not modelled | 99.3 | 15 | PDB header:transferase Chain: A: PDB Molecule:bifunctional coenzyme a synthase; PDBTitle: crystal structure of bifunctional coenzyme a synthase (coa synthase):2 (18044849) from mus musculus at 1.70 a resolution
77 | d1m7gb_ |
| not modelled | 99.3 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Adenosine-5'phosphosulfate kinase (APS kinase)
78 | d1zp6a1 |
| not modelled | 99.3 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Atu3015-like
79 | c3r8cB_ |
| not modelled | 99.3 | 13 | PDB header:transferase Chain: B: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of cytidylate kinase (cmk) from mycobacterium2 abscessus
80 | c2vliB_ |
| not modelled | 99.2 | 15 | PDB header:transferase Chain: B: PDB Molecule:antibiotic resistance protein; PDBTitle: structure of deinococcus radiodurans tunicamycin resistance2 protein
81 | c2grjH_ |
| not modelled | 99.2 | 15 | PDB header:transferase Chain: H: PDB Molecule:dephospho-coa kinase; PDBTitle: crystal structure of dephospho-coa kinase (ec 2.7.1.24)2 (dephosphocoenzyme a kinase) (tm1387) from thermotoga maritima at3 2.60 a resolution
82 | d1uf9a_ |
| not modelled | 99.2 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
83 | d1bifa1 |
| not modelled | 99.2 | 13 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
84 | d1y63a_ |
| not modelled | 99.2 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
85 | d1jjva_ |
| not modelled | 99.2 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
86 | d1rkba_ |
| not modelled | 99.2 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
87 | c3h0kA_ |
| not modelled | 99.2 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0200 protein sso1041; PDBTitle: crystal structure of an adenylated kinase related protein from2 sulfolobus solfataricus to 3.25a
88 | c2if2C_ |
| not modelled | 99.2 | 17 | PDB header:transferase Chain: C: PDB Molecule:dephospho-coa kinase; PDBTitle: crystal structure of the putative dephospho-coa kinase from aquifex2 aeolicus, northeast structural genomics target qr72.
89 | c3trfB_ |
| not modelled | 99.2 | 19 | PDB header:transferase Chain: B: PDB Molecule:shikimate kinase; PDBTitle: structure of a shikimate kinase (arok) from coxiella burnetii
90 | d1qhxa_ |
| not modelled | 99.2 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Chloramphenicol phosphotransferase
91 | d1viaa_ |
| not modelled | 99.2 | 20 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK)
92 | d1k6ma1 |
| not modelled | 99.1 | 13 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
93 | d2iyva1 |
| not modelled | 99.1 | 20 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK)
94 | c3asyB_ |
| not modelled | 99.1 | 18 | PDB header:transferase Chain: B: PDB Molecule:uridine kinase; PDBTitle: ligand-free structure of uridine kinase from thermus thermophilus hb8
95 | c3tr0A_ |
| not modelled | 99.1 | 14 | PDB header:transferase Chain: A: PDB Molecule:guanylate kinase; PDBTitle: structure of guanylate kinase (gmk) from coxiella burnetii
96 | c1znyA_ |
| not modelled | 99.1 | 10 | PDB header:transferase Chain: A: PDB Molecule:guanylate kinase; PDBTitle: crystal structure of mycobacterium tuberculosis guanylate kinase in2 complex with gdp
97 | d1znwa1 |
| not modelled | 99.1 | 10 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
98 | d1kaga_ |
| not modelled | 99.1 | 19 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK)
99 | c3czpA_ |
| not modelled | 99.0 | 18 | PDB header:transferase Chain: A: PDB Molecule:putative polyphosphate kinase 2; PDBTitle: crystal structure of putative polyphosphate kinase 2 from pseudomonas2 aeruginosa pa01
100 | d1x6va3 |
| not modelled | 99.0 | 19 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Adenosine-5'phosphosulfate kinase (APS kinase)
101 | c1bifA_ |
| not modelled | 99.0 | 13 | PDB header:bifunctional enzyme Chain: A: PDB Molecule:6-phosphofructo-2-kinase/ fructose-2,6-bisphosphatase; PDBTitle: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase bifunctional2 enzyme complexed with atp-g-s and phosphate
102 | c3hdtB_ |
| not modelled | 99.0 | 14 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative kinase; PDBTitle: crystal structure of putative kinase from clostridium symbiosum atcc2 14940
103 | c3ch4B_ |
| not modelled | 99.0 | 15 | PDB header:transferase Chain: B: PDB Molecule:phosphomevalonate kinase; PDBTitle: the crystal structure of human phosphomavelonate kinase at2 1.8 a resolution
104 | d1gkya_ |
| not modelled | 99.0 | 13 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
105 | c1k6mA_ |
| not modelled | 99.0 | 12 | PDB header:transferase, hydrolase Chain: A: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6- PDBTitle: crystal structure of human liver 6-phosphofructo-2-2 kinase/fructose-2,6-bisphosphatase
106 | d1rz3a_ |
| not modelled | 99.0 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase
107 | c1xnjB_ |
| not modelled | 99.0 | 18 | PDB header:transferase Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate PDBTitle: aps complex of human paps synthetase 1
108 | c3cr8C_ |
| not modelled | 98.9 | 20 | PDB header:transferase Chain: C: PDB Molecule:sulfate adenylyltranferase, adenylylsulfate PDBTitle: hexameric aps kinase from thiobacillus denitrificans
109 | c2ia5C_ |
| not modelled | 98.9 | 14 | PDB header:transferase Chain: C: PDB Molecule:polynucleotide kinase; PDBTitle: t4 polynucleotide kinase/phosphatase with bound sulfate and2 magnesium.
110 | c3czqA_ |
| not modelled | 98.9 | 14 | PDB header:transferase Chain: A: PDB Molecule:putative polyphosphate kinase 2; PDBTitle: crystal structure of putative polyphosphate kinase 2 from2 sinorhizobium meliloti
111 | c2qorA_ |
| not modelled | 98.9 | 10 | PDB header:transferase Chain: A: PDB Molecule:guanylate kinase; PDBTitle: crystal structure of plasmodium vivax guanylate kinase
112 | c3rhfB_ |
| not modelled | 98.8 | 14 | PDB header:transferase Chain: B: PDB Molecule:putative polyphosphate kinase 2 family protein; PDBTitle: crystal structure of polyphosphate kinase 2 from arthrobacter2 aurescens tc1
113 | d1ly1a_ |
| not modelled | 98.8 | 13 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
114 | c1ly1A_ |
| not modelled | 98.8 | 13 | PDB header:transferase Chain: A: PDB Molecule:polynucleotide kinase; PDBTitle: structure and mechanism of t4 polynucleotide kinase
115 | c3fdiA_ |
| not modelled | 98.8 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein from eubacterium2 ventriosum atcc 27560.
116 | c3c8uA_ |
| not modelled | 98.8 | 19 | PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of putative fructose transport system kinase2 (yp_612366.1) from silicibacter sp. tm1040 at 1.95 a resolution
117 | d1s96a_ |
| not modelled | 98.7 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
118 | d1lvga_ |
| not modelled | 98.7 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
119 | c2i1vB_ |
| not modelled | 98.7 | 18 | PDB header:transferase, hydrolase Chain: B: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6- PDBTitle: crystal structure of pfkfb3 in complex with adp and2 fructose-2,6-bisphosphate
120 | c1z6gA_ |
| not modelled | 98.7 | 11 | PDB header:transferase Chain: A: PDB Molecule:guanylate kinase; PDBTitle: crystal structure of guanylate kinase from plasmodium falciparum

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0