16/01/2012 22:05:05 : INFO  : Run start: Mon Jan 16 22:05:03 GMT 2012
16/01/2012 22:05:11 : INFO  : Initialised job
16/01/2012 22:05:12 : INFO  : Renaming log file 'phyre2_20120116_220503.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/3229f96af4375195/phyre_20120116_220503.log'
16/01/2012 22:05:14 : INFO  : Initialised job:
Sequence
>batch____
MNQRNMSIINSTPVRVIAIVGCDGSGKSTLTASLVNELAARMPTEHIYLGQSSGRIGEWI
SQLPVIGAPFGRYLRSKAAHVHEKPSTPPGNITALVIYLLSCWRAYKFRKMLCKSQQGFL
LITDRYPQVEVPGFRFDGPQLAKTTGGNGWIKMLRQRELKLYQWMASYLPVLLIRLGIDE
QTAFARKPDHQLAALQEKIAVTPQLTFNGAKILELDGRHPADEILQASLRAIHAALS

16/01/2012 22:05:15 : INFO  : Checked sequence
16/01/2012 22:05:19 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 22:05:20 : INFO  : PSI-BLAST 3 iterations
16/01/2012 22:06:44 : INFO  : PSI-BLAST 5 iterations
16/01/2012 22:08:30 : INFO  : Finished PSI-BLAST
16/01/2012 22:08:32 : INFO  : Running Buildali to generate a3m file
16/01/2012 22:14:39 : INFO  : Converting to HMM
16/01/2012 22:14:41 : INFO  : Calibrating HMM
16/01/2012 22:14:54 : INFO  : Searching HMM database
16/01/2012 22:20:48 : INFO  : Finished buildali
16/01/2012 22:20:50 : INFO  : Predicting secondary structure
16/01/2012 22:20:58 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 22:21:00 : INFO  : Predicting Disordered regions
16/01/2012 22:21:04 : INFO  : Predicted Disorder (Disopred)
16/01/2012 22:21:05 : INFO  : Running memsat_svm check
16/01/2012 22:22:57 : INFO  : Globular protein
16/01/2012 22:22:58 : INFO  : Predicted Transmembrane (memsat_svm) ID '3229f96af4375195'
16/01/2012 22:23:00 : INFO  : Initialising fold library search
16/01/2012 22:23:03 : INFO  : Initialised search input
16/01/2012 22:23:05 : INFO  : Building Ensemble models
16/01/2012 22:23:09 : INFO  : Building hh.c3ld9D_.model.1.pdb
16/01/2012 22:23:25 : INFO  : Building hh.d1gsia_.model.2.pdb
16/01/2012 22:23:36 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/3229f96af4375195/hh.d1gsia_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/3229f96af4375195/d1gsia_.2.pdb
16/01/2012 22:23:42 : INFO  : Building hh.d4tmka_.model.3.pdb
16/01/2012 22:23:55 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/3229f96af4375195/hh.d4tmka_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/3229f96af4375195/d4tmka_.3.pdb
16/01/2012 22:24:00 : INFO  : Building hh.d1tmka_.model.4.pdb
16/01/2012 22:24:12 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/3229f96af4375195/hh.d1tmka_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/3229f96af4375195/d1tmka_.4.pdb
16/01/2012 22:24:17 : INFO  : Building hh.d1nn5a_.model.5.pdb
16/01/2012 22:24:29 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/3229f96af4375195/hh.d1nn5a_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/3229f96af4375195/d1nn5a_.5.pdb
16/01/2012 22:24:33 : INFO  : Building hh.c2w0sB_.model.6.pdb
16/01/2012 22:24:46 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/3229f96af4375195/hh.c2w0sB_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/3229f96af4375195/c2w0sB_.6.pdb
16/01/2012 22:24:51 : INFO  : Building hh.d1ls1a2.model.7.pdb
16/01/2012 22:25:03 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/3229f96af4375195/hh.d1ls1a2.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/3229f96af4375195/d1ls1a2.132.pdb
16/01/2012 22:25:08 : INFO  : Building c3ld9D_.1.pdb
16/01/2012 22:25:23 : INFO  : Building d1gsia_.2.pdb
16/01/2012 22:25:38 : INFO  : Building d4tmka_.3.pdb
16/01/2012 22:25:55 : INFO  : Building d1tmka_.4.pdb
16/01/2012 22:26:10 : INFO  : Building d1nn5a_.5.pdb
16/01/2012 22:26:24 : INFO  : Building c2w0sB_.6.pdb
16/01/2012 22:26:39 : INFO  : Building c3lv8A_.7.pdb
16/01/2012 22:26:54 : INFO  : Building c2plrB_.8.pdb
16/01/2012 22:27:08 : INFO  : Building c2pbrB_.9.pdb
16/01/2012 22:27:23 : INFO  : Building c2ccjA_.10.pdb
16/01/2012 22:27:38 : INFO  : Building c2wwiC_.11.pdb
16/01/2012 22:27:53 : INFO  : Building d2ocpa1.12.pdb
16/01/2012 22:28:11 : INFO  : Building c2z0hA_.13.pdb
16/01/2012 22:28:27 : INFO  : Building d1p5zb_.14.pdb
16/01/2012 22:28:42 : INFO  : Building c3tlxA_.15.pdb
16/01/2012 22:28:56 : INFO  : Building c2qroB_.16.pdb
16/01/2012 22:29:11 : INFO  : Building c2rh5B_.17.pdb
16/01/2012 22:29:26 : INFO  : Building c2xb4A_.18.pdb
16/01/2012 22:29:40 : INFO  : Building c3akyA_.19.pdb
16/01/2012 22:29:55 : INFO  : Building c2bwjC_.20.pdb
16/01/2012 22:31:55 : INFO  : Finished HH model building
16/01/2012 22:31:57 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 22:32:59 : INFO  : html domain output complete ID '3229f96af4375195'
16/01/2012 23:17:35 : INFO  : Run end  : Mon Jan 16 23:17:34 GMT 2012
