169 c1nijA_ Probab=94.42   E-value=0.16  Score=26.94  Aligned_columns=108  Identities=16%

Q ss_pred             EEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHCCCCCCCCCHHHHHCCCCCHHHHCCCC-CCCEEEE
Q ss_conf             999748878998999999999999889959999888988003773788763210135530657788840356-6981899
Q batch____         4 LGLQGVRGGVGTTTITAALAWSLQMLGENVLVVDACPDNLLRLSFNVDFTHRQGWARAMLDGQDWRDAGLRY-TSQLDLL   82 (250)
Q Consensus         4 Iav~s~KGGvGKTtla~nLA~~la~~g~~VlliD~D~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~l   82 (250)
                      |.+.++==|+||||+-.++...  .+|.++.+|=.|.                       +...++...... ...+.-+
T Consensus         5 v~iitGfLGaGKTTll~~ll~~--~~~~~~avi~Nef-----------------------g~~~iD~~ll~~~~~~v~~l   59 (317)
T c1nijA_           5 VTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIENEF-----------------------GEVSVDDQLIGDRATQIKTL   59 (317)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS--CCCCCEEEECSSC-----------------------CSCCEEEEEECTTSCEEEEE
T ss_pred             EEEECCCCCCCHHHHHHHHHHC--CCCCEEEEEEECC-----------------------CCCCHHHHHHHHCCCEEEEE
T ss_conf             8998089888988999999842--6997389997166-----------------------44420588984079729997


Q ss_pred             ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHHHHCC
Q ss_conf             56887754011123335577789999988751168989998589888988886774088
Q batch____        83 PFGQLSIEEQENPQHWQTRLSDICSGLQQLKASGRYQWILIDLPRDASQITHQLLSLCD  141 (250)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~~~~~~~~~~~~l~~ad  141 (250)
                      ..|...-............+.+.....     ...+|+|+|.+.+-.++.........+
T Consensus        60 ~~GCiCC~~~~~~~~~l~~l~~~~~~~-----~~~~d~i~IE~sG~a~p~~i~~~l~~~  113 (317)
T c1nijA_          60 TNGCICCSRSNELEDALLDLLDNLDKG-----NIQFDRLVIECTGMADPGPIIQTFFSH  113 (317)
T ss_dssp             TTSCEEECTTSCHHHHHHHHHHHHHHT-----SCCCSEEEEEEETTCCHHHHHHHHHHS
T ss_pred             CCCCEECCCHHHHHHHHHHHHHHHCCC-----CCCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf             799542132477899999999841255-----468668998088757989999886308