Phyre 2 Results for P37655

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P37655
Date | Thu Jan 5 11:56:28 GMT 2012
Unique Job ID | 320ed57b806ef376

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d2afhe1
Top template information
Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
Confidence and coverage
Confidence: | 100.0% | Coverage: | 93%
232 residues ( 93% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | A | V | L | G | L | Q | G | V | R | G | G | V | G | T | T | T | I | T | A | A | L | A | W | S | L | Q | M | L | G | E | N | V | L | V | V | D | A | C | P | D | N | L | L | R | L | S | F | N | V | D | F | T | H | R | Q | G | W | A | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | A | M | L | D | G | Q | D | W | R | D | A | G | L | R | Y | T | S | Q | L | D | L | L | P | F | G | Q | L | S | I | E | E | Q | E | N | P | Q | H | W | Q | T | R | L | S | D | I | C | S | G | L | Q | Q | L | K | A | S | G | R | Y | Q | W
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | I | L | I | D | L | P | R | D | A | S | Q | I | T | H | Q | L | L | S | L | C | D | H | S | L | A | I | V | N | V | D | A | N | C | H | I | R | L | H | Q | Q | A | L | P | D | G | A | H | I | L | I | N | D | F | R | I | G | S | Q | V | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | D | D | I | Y | Q | L | W | L | Q | S | Q | R | R | L | L | P | M | L | I | H | R | D | E | A | M | A | E | C | L | A | A | K | Q | P | V | G | E | Y | R | S | D | A | L | A | A | E | E | I | L | T | L | A | N | W | C | L | L | N | Y | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250
Sequence |  | G | L | K | T | P | V | G | S | A | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d2afhe1 |

### PDB 2afh chain E domain 1

Region: 1 - 238
Aligned: 232
Modelled: 238
Confidence: 100.0%
Identity: 14%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2
2 |
| d1cp2a_ |

### PDB 1cp2 chain A

Region: 1 - 241
Aligned: 237
Modelled: 241
Confidence: 100.0%
Identity: 15%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2
3 |
| c3endA_ |

### PDB 3end chain A

Region: 2 - 241
Aligned: 235
Modelled: 240
Confidence: 100.0%
Identity: 14%
PDB header:oxidoreductase
Chain: A: PDB Molecule:light-independent protochlorophyllide reductase
PDBTitle: crystal structure of the l protein of rhodobacter2 sphaeroides light-independent protochlorophyllide3 reductase (bchl) with mgadp bound: a homologue of the4 nitrogenase fe protein

Phyre2
4 |
| c2ozeA_ |

### PDB 2oze chain A

Region: 1 - 244
Aligned: 243
Modelled: 244
Confidence: 100.0%
Identity: 14%
PDB header:dna binding protein
Chain: A: PDB Molecule:orf delta';
PDBTitle: the crystal structure of delta protein of psm19035 from2 streptoccocus pyogenes

Phyre2
5 |
| c3kjgB_ |

### PDB 3kjg chain B

Region: 1 - 240
Aligned: 228
Modelled: 235
Confidence: 100.0%
Identity: 17%
PDB header:hydrolase, metal binding protein
Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase complex, accessory
PDBTitle: adp-bound state of cooc1

Phyre2
6 |
| d1hyqa_ |

### PDB 1hyq chain A

Region: 1 - 235
Aligned: 225
Modelled: 235
Confidence: 100.0%
Identity: 17%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2
7 |
| c1hyqA_ |

### PDB 1hyq chain A

Region: 1 - 235
Aligned: 225
Modelled: 235
Confidence: 100.0%
Identity: 17%
PDB header:cell cycle
Chain: A: PDB Molecule:cell division inhibitor (mind-1);
PDBTitle: mind bacterial cell division regulator from a. fulgidus

Phyre2
8 |
| c2bekB_ |

### PDB 2bek chain B

Region: 1 - 239
Aligned: 228
Modelled: 239
Confidence: 100.0%
Identity: 18%
PDB header:chromosome segregation
Chain: B: PDB Molecule:segregation protein;
PDBTitle: structure of the bacterial chromosome segregation protein2 soj

Phyre2
9 |
| d1iona_ |

### PDB 1ion chain A

Region: 2 - 244
Aligned: 233
Modelled: 235
Confidence: 100.0%
Identity: 18%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2
10 |
| c3ez6B_ |

### PDB 3ez6 chain B

Region: 2 - 243
Aligned: 242
Modelled: 242
Confidence: 100.0%
Identity: 14%
PDB header:dna binding protein
Chain: B: PDB Molecule:plasmid partition protein a;
PDBTitle: structure of para-adp complex:tetragonal form

Phyre2
11 |
| c3q9lB_ |

### PDB 3q9l chain B

Region: 2 - 238
Aligned: 228
Modelled: 237
Confidence: 100.0%
Identity: 18%
PDB header:cell cycle, hydrolase
Chain: B: PDB Molecule:septum site-determining protein mind;
PDBTitle: the structure of the dimeric e.coli mind-atp complex

Phyre2
12 |
| d1g3qa_ |

### PDB 1g3q chain A

Region: 2 - 237
Aligned: 226
Modelled: 234
Confidence: 100.0%
Identity: 18%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nitrogenase iron protein-like

Phyre2
13 |
| c3ea0B_ |

### PDB 3ea0 chain B

Region: 1 - 235
Aligned: 223
Modelled: 235
Confidence: 100.0%
Identity: 18%
PDB header:hydrolase
Chain: B: PDB Molecule:atpase, para family;
PDBTitle: crystal structure of para family atpase from chlorobium tepidum tls

Phyre2
14 |
| c2xj9B_ |

### PDB 2xj9 chain B

Region: 2 - 241
Aligned: 223
Modelled: 223
Confidence: 100.0%
Identity: 18%
PDB header:replication
Chain: B: PDB Molecule:mipz;
PDBTitle: dimer structure of the bacterial cell division regulator mipz

Phyre2
15 |
| c2ph1A_ |

### PDB 2ph1 chain A

Region: 2 - 221
Aligned: 213
Modelled: 220
Confidence: 100.0%
Identity: 15%
PDB header:ligand binding protein
Chain: A: PDB Molecule:nucleotide-binding protein;
PDBTitle: crystal structure of nucleotide-binding protein af2382 from2 archaeoglobus fulgidus, northeast structural genomics target gr165

Phyre2
16 |
| c3cwqB_ |

### PDB 3cwq chain B

Region: 3 - 239
Aligned: 185
Modelled: 189
Confidence: 100.0%
Identity: 22%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:para family chromosome partitioning protein;
PDBTitle: crystal structure of chromosome partitioning protein (para) in complex2 with adp from synechocystis sp. northeast structural genomics3 consortium target sgr89

Phyre2
17 |
| c3pg5A_ |

### PDB 3pg5 chain A

Region: 1 - 162
Aligned: 162
Modelled: 161
Confidence: 100.0%
Identity: 18%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of protein dip2308 from corynebacterium diphtheriae,2 northeast structural genomics consortium target cdr78

Phyre2
18 |
| c3ezfA_ |

### PDB 3ezf chain A

Region: 2 - 209
Aligned: 206
Modelled: 208
Confidence: 100.0%
Identity: 11%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:para;
PDBTitle: partition protein

Phyre2
19 |
| c3k9gA_ |

### PDB 3k9g chain A

Region: 2 - 211
Aligned: 202
Modelled: 210
Confidence: 100.0%
Identity: 15%
PDB header:biosynthetic protein
Chain: A: PDB Molecule:pf-32 protein;
PDBTitle: crystal structure of a plasmid partition protein from borrelia2 burgdorferi at 2.25a resolution, iodide soak

Phyre2
20 |
| c3fkqA_ |

### PDB 3fkq chain A

Region: 2 - 213
Aligned: 199
Modelled: 210
Confidence: 100.0%
Identity: 15%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:ntrc-like two-domain protein;
PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d2afhe1 |
|  | 100.0 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
2 | d1cp2a_ |
|  | 100.0 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
3 | c3endA_ |
|  | 100.0 | 14 | PDB header:oxidoreductase Chain: A: PDB Molecule:light-independent protochlorophyllide reductase PDBTitle: crystal structure of the l protein of rhodobacter2 sphaeroides light-independent protochlorophyllide3 reductase (bchl) with mgadp bound: a homologue of the4 nitrogenase fe protein
4 | c2ozeA_ |
|  | 100.0 | 14 | PDB header:dna binding protein Chain: A: PDB Molecule:orf delta'; PDBTitle: the crystal structure of delta protein of psm19035 from2 streptoccocus pyogenes
5 | c3kjgB_ |
|  | 100.0 | 17 | PDB header:hydrolase, metal binding protein Chain: B: PDB Molecule:co dehydrogenase/acetyl-coa synthase complex, accessory PDBTitle: adp-bound state of cooc1
6 | d1hyqa_ |
|  | 100.0 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
7 | c1hyqA_ |
|  | 100.0 | 17 | PDB header:cell cycle Chain: A: PDB Molecule:cell division inhibitor (mind-1); PDBTitle: mind bacterial cell division regulator from a. fulgidus
8 | c2bekB_ |
|  | 100.0 | 18 | PDB header:chromosome segregation Chain: B: PDB Molecule:segregation protein; PDBTitle: structure of the bacterial chromosome segregation protein2 soj
9 | d1iona_ |
|  | 100.0 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
10 | c3ez6B_ |
|  | 100.0 | 14 | PDB header:dna binding protein Chain: B: PDB Molecule:plasmid partition protein a; PDBTitle: structure of para-adp complex:tetragonal form
11 | c3q9lB_ |
|  | 100.0 | 18 | PDB header:cell cycle, hydrolase Chain: B: PDB Molecule:septum site-determining protein mind; PDBTitle: the structure of the dimeric e.coli mind-atp complex
12 | d1g3qa_ |
|  | 100.0 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
13 | c3ea0B_ |
|  | 100.0 | 18 | PDB header:hydrolase Chain: B: PDB Molecule:atpase, para family; PDBTitle: crystal structure of para family atpase from chlorobium tepidum tls
14 | c2xj9B_ |
|  | 100.0 | 18 | PDB header:replication Chain: B: PDB Molecule:mipz; PDBTitle: dimer structure of the bacterial cell division regulator mipz
15 | c2ph1A_ |
|  | 100.0 | 15 | PDB header:ligand binding protein Chain: A: PDB Molecule:nucleotide-binding protein; PDBTitle: crystal structure of nucleotide-binding protein af2382 from2 archaeoglobus fulgidus, northeast structural genomics target gr165
16 | c3cwqB_ |
|  | 100.0 | 22 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:para family chromosome partitioning protein; PDBTitle: crystal structure of chromosome partitioning protein (para) in complex2 with adp from synechocystis sp. northeast structural genomics3 consortium target sgr89
17 | c3pg5A_ |
|  | 100.0 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of protein dip2308 from corynebacterium diphtheriae,2 northeast structural genomics consortium target cdr78
18 | c3ezfA_ |
|  | 100.0 | 11 | PDB header:biosynthetic protein Chain: A: PDB Molecule:para; PDBTitle: partition protein
19 | c3k9gA_ |
|  | 100.0 | 15 | PDB header:biosynthetic protein Chain: A: PDB Molecule:pf-32 protein; PDBTitle: crystal structure of a plasmid partition protein from borrelia2 burgdorferi at 2.25a resolution, iodide soak
20 | c3fkqA_ |
|  | 100.0 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:ntrc-like two-domain protein; PDBTitle: crystal structure of ntrc-like two-domain protein (rer070207001320)2 from eubacterium rectale at 2.10 a resolution
21 | c2wooC_ |
| not modelled | 100.0 | 14 | PDB header:hydrolase Chain: C: PDB Molecule:atpase get3; PDBTitle: nucleotide-free form of s. pombe get3
22 | d1byia_ |
| not modelled | 99.9 | 12 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
23 | c2wojD_ |
| not modelled | 99.9 | 17 | PDB header:hydrolase Chain: D: PDB Molecule:atpase get3; PDBTitle: adp-alf4 complex of s. cerevisiae get3
24 | c3zq6D_ |
| not modelled | 99.9 | 17 | PDB header:hydrolase Chain: D: PDB Molecule:putative arsenical pump-driving atpase; PDBTitle: adp-alf4 complex of m. therm. trc40
25 | d1ihua1 |
| not modelled | 99.9 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
26 | c3ibgF_ |
| not modelled | 99.9 | 19 | PDB header:hydrolase Chain: F: PDB Molecule:atpase, subunit of the get complex; PDBTitle: crystal structure of aspergillus fumigatus get3 with bound2 adp
27 | c3ug7D_ |
| not modelled | 99.9 | 20 | PDB header:hydrolase Chain: D: PDB Molecule:arsenical pump-driving atpase; PDBTitle: crystal structure of get3 from methanocaldococcus jannaschii
28 | c3of5A_ |
| not modelled | 99.9 | 12 | PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of a dethiobiotin synthetase from francisella2 tularensis subsp. tularensis schu s4
29 | c3io3A_ |
| not modelled | 99.9 | 18 | PDB header:chaperone Chain: A: PDB Molecule:deha2d07832p; PDBTitle: get3 with adp from d. hansenii in closed form
30 | d1ihua2 |
| not modelled | 99.9 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
31 | c3la6P_ |
| not modelled | 99.9 | 19 | PDB header:transferase Chain: P: PDB Molecule:tyrosine-protein kinase wzc; PDBTitle: octameric kinase domain of the e. coli tyrosine kinase wzc with bound2 adp
32 | c3cioA_ |
| not modelled | 99.9 | 14 | PDB header:signaling protein, transferase Chain: A: PDB Molecule:tyrosine-protein kinase etk; PDBTitle: the kinase domain of escherichia coli tyrosine kinase etk
33 | c1ii0A_ |
| not modelled | 99.9 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:arsenical pump-driving atpase; PDBTitle: crystal structure of the escherichia coli arsenite-translocating2 atpase
34 | c2vedA_ |
| not modelled | 99.9 | 14 | PDB header:transferase Chain: A: PDB Molecule:membrane protein capa1, protein tyrosine kinase; PDBTitle: crystal structure of the chimerical mutant capabk55m2 protein
35 | c2qmoA_ |
| not modelled | 99.9 | 10 | PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of dethiobiotin synthetase (biod) from helicobacter2 pylori
36 | c3igfB_ |
| not modelled | 99.9 | 20 | PDB header:atp binding protein Chain: B: PDB Molecule:all4481 protein; PDBTitle: crystal structure of the all4481 protein from nostoc sp. pcc 7120,2 northeast structural genomics consortium target nsr300
37 | c3fmfA_ |
| not modelled | 99.8 | 14 | PDB header:ligase Chain: A: PDB Molecule:dethiobiotin synthetase; PDBTitle: crystal structure of mycobacterium tuberculosis dethiobiotin2 synthetase complexed with 7,8 diaminopelargonic acid carbamate
38 | c1zu4A_ |
| not modelled | 99.4 | 20 | PDB header:protein transport Chain: A: PDB Molecule:ftsy; PDBTitle: crystal structure of ftsy from mycoplasma mycoides- space2 group p21212
39 | c2qy9A_ |
| not modelled | 99.3 | 15 | PDB header:protein transport Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: structure of the ng+1 construct of the e. coli srp receptor2 ftsy
40 | c1vmaA_ |
| not modelled | 99.2 | 14 | PDB header:protein transport Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: crystal structure of cell division protein ftsy (tm0570) from2 thermotoga maritima at 1.60 a resolution
41 | c3b9qA_ |
| not modelled | 99.2 | 13 | PDB header:protein transport Chain: A: PDB Molecule:chloroplast srp receptor homolog, alpha subunit PDBTitle: the crystal structure of cpftsy from arabidopsis thaliana
42 | c2og2A_ |
| not modelled | 99.2 | 17 | PDB header:protein transport Chain: A: PDB Molecule:putative signal recognition particle receptor; PDBTitle: crystal structure of chloroplast ftsy from arabidopsis2 thaliana
43 | c3dm5A_ |
| not modelled | 99.2 | 15 | PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus.
44 | c2j7pA_ |
| not modelled | 99.1 | 17 | PDB header:signal recognition Chain: A: PDB Molecule:signal recognition particle protein; PDBTitle: gmppnp-stabilized ng domain complex of the srp gtpases ffh2 and ftsy
45 | c2yhsA_ |
| not modelled | 99.1 | 15 | PDB header:cell cycle Chain: A: PDB Molecule:cell division protein ftsy; PDBTitle: structure of the e. coli srp receptor ftsy
46 | c2cnwF_ |
| not modelled | 99.1 | 20 | PDB header:signal recognition Chain: F: PDB Molecule:cell division protein ftsy; PDBTitle: gdpalf4 complex of the srp gtpases ffh and ftsy
47 | c2iy3A_ |
| not modelled | 99.1 | 17 | PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
48 | c2j37W_ |
| not modelled | 99.0 | 19 | PDB header:ribosome Chain: W: PDB Molecule:signal recognition particle 54 kda protein PDBTitle: model of mammalian srp bound to 80s rncs
49 | c2v3cC_ |
| not modelled | 99.0 | 14 | PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii
50 | c1qzwC_ |
| not modelled | 98.9 | 14 | PDB header:signaling protein/rna Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the complete core of archaeal srp and2 implications for inter-domain communication
51 | c3dmdA_ |
| not modelled | 98.8 | 14 | PDB header:transport protein Chain: A: PDB Molecule:signal recognition particle receptor; PDBTitle: structures and conformations in solution of the signal recognition2 particle receptor from the archaeon pyrococcus furiosus
52 | c2j289_ |
| not modelled | 98.7 | 26 | PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs
53 | d1qzxa3 |
| not modelled | 98.4 | 24 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
54 | d1vmaa2 |
| not modelled | 98.3 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
55 | c2px0D_ |
| not modelled | 98.3 | 10 | PDB header:biosynthetic protein Chain: D: PDB Molecule:flagellar biosynthesis protein flhf; PDBTitle: crystal structure of flhf complexed with gmppnp/mg(2+)
56 | c2npiB_ |
| not modelled | 98.1 | 10 | PDB header:transcription Chain: B: PDB Molecule:protein clp1; PDBTitle: clp1-atp-pcf11 complex
57 | d1j8yf2 |
| not modelled | 97.9 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
58 | d2qy9a2 |
| not modelled | 97.9 | 22 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
59 | d1okkd2 |
| not modelled | 97.8 | 26 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
60 | d2qm8a1 |
| not modelled | 97.7 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
61 | c2recB_ |
| not modelled | 97.7 | 13 | PDB header:helicase PDB COMPND:
62 | d1ls1a2 |
| not modelled | 97.6 | 27 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
63 | d1xp8a1 |
| not modelled | 97.6 | 13 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
64 | c2h5eB_ |
| not modelled | 97.5 | 19 | PDB header:translation Chain: B: PDB Molecule:peptide chain release factor rf-3; PDBTitle: crystal structure of e.coli polypeptide release factor rf3
65 | d1ubea1 |
| not modelled | 97.5 | 12 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
66 | c1xp8A_ |
| not modelled | 97.5 | 13 | PDB header:dna binding protein Chain: A: PDB Molecule:reca protein; PDBTitle: "deinococcus radiodurans reca in complex with atp-gamma-s"
67 | c2zroA_ |
| not modelled | 97.4 | 22 | PDB header:hydrolase Chain: A: PDB Molecule:protein reca; PDBTitle: msreca adp form iv
68 | d1np6a_ |
| not modelled | 97.4 | 20 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
69 | c3hr8A_ |
| not modelled | 97.4 | 12 | PDB header:recombination Chain: A: PDB Molecule:protein reca; PDBTitle: crystal structure of thermotoga maritima reca
70 | c2f1rA_ |
| not modelled | 97.4 | 25 | PDB header:biosynthetic protein Chain: A: PDB Molecule:molybdopterin-guanine dinucleotide biosynthesis PDBTitle: crystal structure of molybdopterin-guanine biosynthesis2 protein b (mobb)
71 | d1nksa_ |
| not modelled | 97.3 | 25 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
72 | d1xjca_ |
| not modelled | 97.3 | 21 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
73 | c1j8yF_ |
| not modelled | 97.3 | 27 | PDB header:signaling protein Chain: F: PDB Molecule:signal recognition 54 kda protein; PDBTitle: signal recognition particle conserved gtpase domain from a.2 ambivalens t112a mutant
74 | c3tr5C_ |
| not modelled | 97.2 | 22 | PDB header:translation Chain: C: PDB Molecule:peptide chain release factor 3; PDBTitle: structure of a peptide chain release factor 3 (prfc) from coxiella2 burnetii
75 | c3bgwD_ |
| not modelled | 97.2 | 17 | PDB header:replication Chain: D: PDB Molecule:dnab-like replicative helicase; PDBTitle: the structure of a dnab-like replicative helicase and its interactions2 with primase
76 | d1nija1 |
| not modelled | 97.1 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
77 | d1u94a1 |
| not modelled | 97.1 | 22 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
78 | d1g5ta_ |
| not modelled | 97.1 | 19 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
79 | c1xnjB_ |
| not modelled | 97.0 | 23 | PDB header:transferase Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate PDBTitle: aps complex of human paps synthetase 1
80 | d1mo6a1 |
| not modelled | 97.0 | 19 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
81 | c3nxsA_ |
| not modelled | 97.0 | 22 | PDB header:transport protein Chain: A: PDB Molecule:lao/ao transport system atpase; PDBTitle: crystal structure of lao/ao transport system from mycobacterium2 smegmatis bound to gdp
82 | c2q6tB_ |
| not modelled | 97.0 | 19 | PDB header:hydrolase Chain: B: PDB Molecule:dnab replication fork helicase; PDBTitle: crystal structure of the thermus aquaticus dnab monomer
83 | d1g64b_ |
| not modelled | 97.0 | 19 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
84 | c3cmvG_ |
| not modelled | 96.9 | 19 | PDB header:recombination Chain: G: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures
85 | c3bh0A_ |
| not modelled | 96.8 | 17 | PDB header:replication Chain: A: PDB Molecule:dnab-like replicative helicase; PDBTitle: atpase domain of g40p
86 | d1nlfa_ |
| not modelled | 96.8 | 22 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
87 | d1rz3a_ |
| not modelled | 96.8 | 31 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase
88 | c2wwwB_ |
| not modelled | 96.7 | 19 | PDB header:transport protein Chain: B: PDB Molecule:methylmalonic aciduria type a protein, PDBTitle: crystal structure of methylmalonic acidemia type a protein
89 | c2vyeA_ |
| not modelled | 96.7 | 25 | PDB header:hydrolase Chain: A: PDB Molecule:replicative dna helicase; PDBTitle: crystal structure of the dnac-ssdna complex
90 | c2w0mA_ |
| not modelled | 96.7 | 14 | PDB header:unknown function Chain: A: PDB Molecule:sso2452; PDBTitle: crystal structure of sso2452 from sulfolobus solfataricus2 p2
91 | c2ztsB_ |
| not modelled | 96.6 | 25 | PDB header:atp-binding protein Chain: B: PDB Molecule:putative uncharacterized protein ph0186; PDBTitle: crystal structure of kaic-like protein ph0186 from2 hyperthermophilic archaea pyrococcus horikoshii ot3
92 | d1tf7a2 |
| not modelled | 96.6 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
93 | c2dr3A_ |
| not modelled | 96.5 | 15 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0273 protein ph0284; PDBTitle: crystal structure of reca superfamily atpase ph0284 from pyrococcus2 horikoshii ot3
94 | d1odfa_ |
| not modelled | 96.5 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase
95 | c1fnnB_ |
| not modelled | 96.5 | 13 | PDB header:cell cycle Chain: B: PDB Molecule:cell division control protein 6; PDBTitle: crystal structure of cdc6p from pyrobaculum aerophilum
96 | c3a4mB_ |
| not modelled | 96.5 | 26 | PDB header:transferase Chain: B: PDB Molecule:l-seryl-trna(sec) kinase; PDBTitle: crystal structure of archaeal o-phosphoseryl-trna(sec)2 kinase
97 | d1k6ma1 |
| not modelled | 96.3 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
98 | d2cdna1 |
| not modelled | 96.3 | 46 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
99 | c3c8uA_ |
| not modelled | 96.3 | 27 | PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of putative fructose transport system kinase2 (yp_612366.1) from silicibacter sp. tm1040 at 1.95 a resolution
100 | c2gksB_ |
| not modelled | 96.3 | 27 | PDB header:transferase Chain: B: PDB Molecule:bifunctional sat/aps kinase; PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile
101 | d1x6va3 |
| not modelled | 96.3 | 26 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Adenosine-5'phosphosulfate kinase (APS kinase)
102 | d1ki9a_ |
| not modelled | 96.3 | 31 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
103 | d1yrba1 |
| not modelled | 96.2 | 22 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
104 | c3cr8C_ |
| not modelled | 96.1 | 27 | PDB header:transferase Chain: C: PDB Molecule:sulfate adenylyltranferase, adenylylsulfate PDBTitle: hexameric aps kinase from thiobacillus denitrificans
105 | c3tqcB_ |
| not modelled | 96.1 | 25 | PDB header:transferase Chain: B: PDB Molecule:pantothenate kinase; PDBTitle: structure of the pantothenate kinase (coaa) from coxiella burnetii
106 | d1bifa1 |
| not modelled | 96.0 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
107 | d1sq5a_ |
| not modelled | 96.0 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase
108 | c3asyB_ |
| not modelled | 96.0 | 31 | PDB header:transferase Chain: B: PDB Molecule:uridine kinase; PDBTitle: ligand-free structure of uridine kinase from thermus thermophilus hb8
109 | d1e4va1 |
| not modelled | 95.9 | 21 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
110 | d1tf7a1 |
| not modelled | 95.9 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RecA protein-like (ATPase-domain)
111 | d2p67a1 |
| not modelled | 95.9 | 23 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like
112 | c2ywfA_ |
| not modelled | 95.9 | 19 | PDB header:translation Chain: A: PDB Molecule:gtp-binding protein lepa; PDBTitle: crystal structure of gmppnp-bound lepa from aquifex aeolicus
113 | c2gesA_ |
| not modelled | 95.9 | 22 | PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase; PDBTitle: pantothenate kinase from mycobacterium tuberculosis (mtpank) in2 complex with a coenzyme a derivative, form-i (rt)
114 | d1fjha_ |
| not modelled | 95.8 | 25 | Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Tyrosine-dependent oxidoreductases
115 | c2grjH_ |
| not modelled | 95.8 | 24 | PDB header:transferase Chain: H: PDB Molecule:dephospho-coa kinase; PDBTitle: crystal structure of dephospho-coa kinase (ec 2.7.1.24)2 (dephosphocoenzyme a kinase) (tm1387) from thermotoga maritima at3 2.60 a resolution
116 | c3lv8A_ |
| not modelled | 95.7 | 18 | PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate kinase2 (tmk) from vibrio cholerae o1 biovar eltor str. n16961 in complex3 with tmp, thymidine-5'-diphosphate and adp
117 | d1khta_ |
| not modelled | 95.7 | 29 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
118 | c2pbrB_ |
| not modelled | 95.7 | 26 | PDB header:transferase Chain: B: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of thymidylate kinase (aq_969) from aquifex aeolicus2 vf5
119 | d1akya1 |
| not modelled | 95.7 | 25 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
120 | c2yvuA_ |
| not modelled | 95.6 | 35 | PDB header:transferase Chain: A: PDB Molecule:probable adenylyl-sulfate kinase; PDBTitle: crystal structure of ape1195

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0