Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	F	P	G	K	R	K	S	K	H	Y	F	P	V	N	A	R	D	P	L	L	Q	Q	F	Q	P	E	N	E	T	S	A	A	W	V	V	G	I	D	Q	T	L	V	D	I	E	A	K	V	D	D	E	F	I	E	R	Y	G	L
Secondary structure
SS confidence
Disorder		?	?	?	?	?	?	?	?	?	?	?	?	?	?			?			?	?			?	?	?	?	?	?	?	?																											?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		S	A	G	H	S	L	V	I	E	D	D	V	A	E	A	L	Y	Q	E	L	K	Q	K	N	L	I	T	H	Q	F	A	G	G	T	I	G	N	T	M	H	N	Y	S	V	L	A	D	D	R	S	V	L	L	G	V	M	C	S	N	I
Secondary structure
SS confidence
Disorder				?	?					?												?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		E	I	G	S	Y	A	Y	R	Y	L	C	N	T	S	S	R	T	D	L	N	Y	L	Q	G	V	D	G	P	I	G	R	C	F	T	L	I	G	E	S	G	E	R	T	F	A	I	S	P	G	H	M	N	Q	L	R	A	E	S	I	P
Secondary structure
SS confidence
Disorder																									?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		E	D	V	I	A	G	A	S	A	L	V	L	T	S	Y	L	V	R	C	K	P	G	E	P	M	P	E	A	T	M	K	A	I	E	Y	A	K	K	Y	N	V	P	V	V	L	T	L	G	T	K	F	V	I	A	E	N	P	Q	W	W
Secondary structure
SS confidence
Disorder																		?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		Q	Q	F	L	K	D	H	V	S	I	L	A	M	N	E	D	E	A	E	A	L	T	G	E	S	D	P	L	L	A	S	D	K	A	L	D	W	V	D	L	V	L	C	T	A	G	P	I	G	L	Y	M	A	G	F	T	E	D	E	A
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		K	R	K	T	Q	H	P	L	L	P	G	A	I	A	E	F	N	Q	Y	E	F	S	R	A	M	R	H	K	D	C	Q	N	P	L	R	V	Y	S	H	I	A	P	Y	M	G	G	P	E	K	I	M	N	T	N	G	A	G	D	G	A
Secondary structure
SS confidence
Disorder																												?	?			?				?	?				?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence		L	A	A	L	L	H	D	I	T	A	N	S	Y	H	R	S	N	V	P	N	S	S	K	H	K	F	T	W	L	T	Y	S	S	L	A	Q	V	C	K	Y	A	N	R	V	S	Y	Q	V	L	N	Q	H	S	P	R	L	T	R	G	L
Secondary structure
SS confidence
Disorder																																																										?
Disorder confidence
		.	.	.	.	.	.	.	.	.	430	.	.	.	.
Sequence		P	E	R	E	D	S	L	E	E	S	Y	W	D	R
Secondary structure
SS confidence
Disorder			?								?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1bx4 chain A Region: 31 - 422 Aligned: 321 Modelled: 333 Confidence: 100.0% Identity: 22% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2xtb chain A Region: 31 - 414 Aligned: 313 Modelled: 325 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator Phyre2 PDB 3loo chain C Region: 32 - 410 Aligned: 301 Modelled: 309 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: C: PDB Molecule:anopheles gambiae adenosine kinase; PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate Phyre2 PDB 2abs chain A domain 1 Region: 35 - 417 Aligned: 316 Modelled: 329 Confidence: 100.0% Identity: 23% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 2abs chain A Region: 35 - 417 Aligned: 316 Modelled: 329 Confidence: 100.0% Identity: 23% PDB header:signaling protein,transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of t. gondii adenosine kinase complexed2 with amp-pcp Phyre2 PDB 2pkk chain A Region: 35 - 429 Aligned: 299 Modelled: 319 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine Phyre2 PDB 2qcv chain A Region: 35 - 429 Aligned: 299 Modelled: 302 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution Phyre2 PDB 3pl2 chain D Region: 32 - 425 Aligned: 297 Modelled: 309 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution Phyre2 PDB 2rbc chain A Region: 33 - 434 Aligned: 302 Modelled: 317 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens Phyre2 PDB 2dcn chain A domain 1 Region: 34 - 425 Aligned: 296 Modelled: 303 Confidence: 100.0% Identity: 18% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3iq0 chain B Region: 34 - 428 Aligned: 299 Modelled: 306 Confidence: 100.0% Identity: 18% PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli Phyre2 PDB 2var chain B Region: 35 - 425 Aligned: 295 Modelled: 302 Confidence: 100.0% Identity: 19% PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate Phyre2 PDB 3in1 chain A Region: 35 - 434 Aligned: 306 Modelled: 312 Confidence: 100.0% Identity: 21% PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli Phyre2 PDB 1v19 chain A Region: 34 - 425 Aligned: 291 Modelled: 303 Confidence: 100.0% Identity: 19% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 1vm7 chain A Region: 36 - 425 Aligned: 281 Modelled: 302 Confidence: 100.0% Identity: 23% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 1rkd chain A Region: 33 - 434 Aligned: 296 Modelled: 317 Confidence: 100.0% Identity: 23% Fold: Ribokinase-like Superfamily: Ribokinase-like Family: Ribokinase-like Phyre2 PDB 3b1q chain D Region: 35 - 432 Aligned: 292 Modelled: 304 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine Phyre2 PDB 3kzh chain A Region: 33 - 429 Aligned: 292 Modelled: 308 Confidence: 100.0% Identity: 17% PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens Phyre2 PDB 3go6 chain B Region: 33 - 425 Aligned: 279 Modelled: 307 Confidence: 100.0% Identity: 20% PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp Phyre2 PDB 3lhx chain A Region: 36 - 421 Aligned: 287 Modelled: 291 Confidence: 100.0% Identity: 15% PDB header:transferase Chain: A: PDB Molecule:ketodeoxygluconokinase; PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri Phyre2 1 d1bx4a_ 2 c2xtbA_ 3 c3looC_ 4 d2absa1 5 c2absA_ 6 c2pkkA_ 7 c2qcvA_ 8 c3pl2D_ 9 c2rbcA_ 10 d2dcna1 11 c3iq0B_ 12 c2varB_ 13 c3in1A_ 14 d1v19a_ 15 d1vm7a_ 16 d1rkda_ 17 c3b1qD_ 18 c3kzhA_ 19 c3go6B_ 20 c3lhxA_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1bx4a_ 100.0 22 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 2 c2xtbA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of trypanosoma brucei rhodesiense2 adenosine kinase complexed with activator 3 c3looC_ 100.0 18 PDB header:transferase Chain: C: PDB Molecule:anopheles gambiae adenosine kinase; PDBTitle: crystal structure of anopheles gambiae adenosine kinase in complex2 with p1,p4-di(adenosine-5) tetraphosphate 4 d2absa1 100.0 23 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 5 c2absA_ 100.0 23 PDB header:signaling protein,transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of t. gondii adenosine kinase complexed2 with amp-pcp 6 c2pkkA_ 100.0 18 PDB header:transferase Chain: A: PDB Molecule:adenosine kinase; PDBTitle: crystal structure of m tuberculosis adenosine kinase complexed with 2-2 fluro adenosine 7 c2qcvA_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:putative 5-dehydro-2-deoxygluconokinase; PDBTitle: crystal structure of a putative 5-dehydro-2-deoxygluconokinase (iolc)2 from bacillus halodurans c-125 at 1.90 a resolution 8 c3pl2D_ 100.0 20 PDB header:transferase Chain: D: PDB Molecule:sugar kinase, ribokinase family; PDBTitle: crystal structure of a 5-keto-2-deoxygluconokinase (ncgl0155, cgl0158)2 from corynebacterium glutamicum atcc 13032 kitasato at 1.89 a3 resolution 9 c2rbcA_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:sugar kinase; PDBTitle: crystal structure of a putative ribokinase from agrobacterium2 tumefaciens 10 d2dcna1 100.0 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 11 c3iq0B_ 100.0 18 PDB header:transferase Chain: B: PDB Molecule:putative ribokinase ii; PDBTitle: crystal structure of a putative ribokinase ii in complex2 with atp and mg+2 from e.coli 12 c2varB_ 100.0 19 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate 13 c3in1A_ 100.0 21 PDB header:transferase Chain: A: PDB Molecule:uncharacterized sugar kinase ydjh; PDBTitle: crystal structure of a putative ribokinase in complex with2 adp from e.coli 14 d1v19a_ 100.0 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 15 d1vm7a_ 100.0 23 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 16 d1rkda_ 100.0 23 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 17 c3b1qD_ 100.0 15 PDB header:transferase Chain: D: PDB Molecule:ribokinase, putative; PDBTitle: structure of burkholderia thailandensis nucleoside kinase (bthnk) in2 complex with inosine 18 c3kzhA_ 100.0 17 PDB header:transferase Chain: A: PDB Molecule:probable sugar kinase; PDBTitle: crystal structure of a putative sugar kinase from2 clostridium perfringens 19 c3go6B_ 100.0 20 PDB header:transferase Chain: B: PDB Molecule:ribokinase rbsk; PDBTitle: crystal structure of m. tuberculosis ribokinase (rv2436) in2 complex with ribose and amp-pnp 20 c3lhxA_ 100.0 15 PDB header:transferase Chain: A: PDB Molecule:ketodeoxygluconokinase; PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri 21 d2fv7a1 not modelled 100.0 23 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 22 c3ktnA_ not modelled 100.0 14 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of a putative 2-keto-3-deoxygluconate2 kinase from enterococcus faecalis 23 c2nwhA_ not modelled 100.0 15 PDB header:signaling protein,transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: carbohydrate kinase from agrobacterium tumefaciens 24 c2jg1C_ not modelled 100.0 17 PDB header:transferase Chain: C: PDB Molecule:tagatose-6-phosphate kinase; PDBTitle: structure of staphylococcus aureus d-tagatose-6-phosphate2 kinase with cofactor and substrate 25 c2c49A_ not modelled 100.0 17 PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family 26 c3cqdB_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:6-phosphofructokinase isozyme 2; PDBTitle: structure of the tetrameric inhibited form of2 phosphofructokinase-2 from escherichia coli 27 d2afba1 not modelled 100.0 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 28 d2f02a1 not modelled 100.0 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 29 d1tyya_ not modelled 100.0 20 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 30 c3kd6B_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase, pfkb family; PDBTitle: crystal structure of nucleoside kinase from chlorobium tepidum in2 complex with amp 31 d2abqa1 not modelled 100.0 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 32 c3julA_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:lin2199 protein; PDBTitle: crystal structure of listeria innocua d-tagatose-6-phosphate2 kinase bound with substrate 33 c3lkiA_ not modelled 100.0 15 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase with bound atp from2 xylella fastidiosa 34 c1tz6B_ not modelled 100.0 19 PDB header:transferase Chain: B: PDB Molecule:putative sugar kinase; PDBTitle: crystal structure of aminoimidazole riboside kinase from2 salmonella enterica complexed with aminoimidazole riboside3 and atp analog 35 c3gbuD_ not modelled 100.0 19 PDB header:transferase Chain: D: PDB Molecule:uncharacterized sugar kinase ph1459; PDBTitle: crystal structure of an uncharacterized sugar kinase ph1459 from2 pyrococcus horikoshii in complex with atp 36 c3i3yB_ not modelled 100.0 19 PDB header:transferase Chain: B: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of ribokinase in complex with d-ribose from2 klebsiella pneumoniae 37 c2jg5B_ not modelled 100.0 18 PDB header:transferase Chain: B: PDB Molecule:fructose 1-phosphate kinase; PDBTitle: crystal structure of a putative phosphofructokinase from2 staphylococcus aureus 38 c3b3lC_ not modelled 100.0 13 PDB header:transferase Chain: C: PDB Molecule:ketohexokinase; PDBTitle: crystal structures of alternatively-spliced isoforms of human2 ketohexokinase 39 c2qhpA_ not modelled 100.0 21 PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of fructokinase (np_810670.1) from bacteroides2 thetaiotaomicron vpi-5482 at 1.80 a resolution 40 c3bf5A_ not modelled 100.0 16 PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution 41 c3hj6B_ not modelled 100.0 19 PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: structure of halothermothrix orenii fructokinase (frk) 42 d2ajra1 not modelled 100.0 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 43 d1vk4a_ not modelled 100.0 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Ribokinase-like 44 c2ddmA_ not modelled 99.9 16 PDB header:transferase Chain: A: PDB Molecule:pyridoxine kinase; PDBTitle: crystal structure of pyridoxal kinase from the escherichia2 coli pdxk gene at 2.1 a resolution 45 c3mbjA_ not modelled 99.7 15 PDB header:transferase Chain: A: PDB Molecule:putative phosphomethylpyrimidine kinase; PDBTitle: crystal structure of a putative phosphomethylpyrimidine kinase2 (bt_4458) from bacteroides thetaiotaomicron vpi-5482 at 2.10 a3 resolution (rhombohedral form) 46 d1vi9a_ not modelled 99.6 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 47 d1lhpa_ not modelled 99.6 22 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:PfkB-like kinase 48 c3ibqA_ not modelled 99.6 15 PDB header:transferase Chain: A: PDB Molecule:pyridoxal kinase; PDBTitle: crystal structure of pyridoxal kinase from lactobacillus2 plantarum in complex with atp 49 d1ub0a_ not modelled 99.5 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 50 c2i5bC_ not modelled 99.5 20 PDB header:transferase Chain: C: PDB Molecule:phosphomethylpyrimidine kinase; PDBTitle: the crystal structure of an adp complex of bacillus2 subtilis pyridoxal kinase provides evidence for the3 parralel emergence of enzyme activity during evolution 51 c3dzvB_ not modelled 99.5 16 PDB header:transferase Chain: B: PDB Molecule:4-methyl-5-(beta-hydroxyethyl)thiazole kinase; PDBTitle: crystal structure of 4-methyl-5-(beta-hydroxyethyl)thiazole2 kinase (np_816404.1) from enterococcus faecalis v583 at3 2.57 a resolution 52 d1jxha_ not modelled 99.4 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 53 d1v8aa_ not modelled 99.2 18 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 54 c3rm5B_ not modelled 99.2 16 PDB header:transferase Chain: B: PDB Molecule:hydroxymethylpyrimidine/phosphomethylpyrimidine kinase PDBTitle: structure of trifunctional thi20 from yeast 55 d1gc5a_ not modelled 98.9 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 56 c3drwA_ not modelled 98.9 13 PDB header:transferase Chain: A: PDB Molecule:adp-specific phosphofructokinase; PDBTitle: crystal structure of a phosphofructokinase from pyrococcus2 horikoshii ot3 with amp 57 d1u2xa_ not modelled 98.8 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 58 d1l2la_ not modelled 98.8 9 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 59 d1ekqa_ not modelled 98.8 17 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:Thiamin biosynthesis kinases 60 c3nm3D_ not modelled 98.7 15 PDB header:transferase Chain: D: PDB Molecule:thiamine biosynthetic bifunctional enzyme; PDBTitle: the crystal structure of candida glabrata thi6, a bifunctional enzyme2 involved in thiamin biosyhthesis of eukaryotes 61 d1kyha_ not modelled 98.6 19 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 62 d1ua4a_ not modelled 98.5 15 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:ADP-specific Phosphofructokinase/Glucokinase 63 d2ax3a1 not modelled 98.0 14 Fold:Ribokinase-like Superfamily:Ribokinase-like Family:YjeF C-terminal domain-like 64 c2r3bA_ not modelled 97.9 10 PDB header:transferase Chain: A: PDB Molecule:yjef-related protein; PDBTitle: crystal structure of a ribokinase-like superfamily protein (ef1790)2 from enterococcus faecalis v583 at 1.80 a resolution 65 c2ax3A_ not modelled 97.4 12 PDB header:transferase Chain: A: PDB Molecule:hypothetical protein tm0922; PDBTitle: crystal structure of a putative carbohydrate kinase (tm0922) from2 thermotoga maritima msb8 at 2.25 a resolution 66 c3bgkA_ not modelled 96.0 15 PDB header:unknown function Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: the crystal structure of hypothetic protein smu.573 from2 streptococcus mutans 67 c3k5wA_ not modelled 95.9 17 PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori 68 d1xw8a_ not modelled 51.4 9 Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:LamB/YcsF-like 69 d1q6oa_ not modelled 40.7 13 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Decarboxylase 70 c3npgD_ not modelled 39.8 7 PDB header:unknown function Chain: D: PDB Molecule:uncharacterized duf364 family protein; PDBTitle: crystal structure of a protein with unknown function from duf3642 family (ph1506) from pyrococcus horikoshii at 2.70 a resolution 71 c3p6lA_ not modelled 35.7 10 PDB header:isomerase Chain: A: PDB Molecule:sugar phosphate isomerase/epimerase; PDBTitle: crystal structure of a sugar phosphate isomerase/epimerase (bdi_1903)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution 72 c3ndnC_ not modelled 33.0 14 PDB header:lyase Chain: C: PDB Molecule:o-succinylhomoserine sulfhydrylase; PDBTitle: crystal structure of o-succinylhomoserine sulfhydrylase from2 mycobacterium tuberculosis covalently bound to pyridoxal-5-phosphate 73 d2h1qa1 not modelled 27.2 12 Fold:PLP-dependent transferase-like Superfamily:Dhaf3308-like Family:Dhaf3308-like 74 c3iraA_ not modelled 26.7 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved protein; PDBTitle: the crystal structure of one domain of the conserved protein from2 methanosarcina mazei go1 75 d1c4ka2 not modelled 21.2 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Ornithine decarboxylase major domain 76 d1t15a2 not modelled 17.9 9 Fold:BRCT domain Superfamily:BRCT domain Family:BRCT domain 77 c2fjaC_ not modelled 17.2 23 PDB header:oxidoreductase Chain: C: PDB Molecule:adenylylsulfate reductase, subunit a; PDBTitle: adenosine 5'-phosphosulfate reductase in complex with2 substrate 78 c3n0lA_ not modelled 15.3 12 PDB header:transferase Chain: A: PDB Molecule:serine hydroxymethyltransferase; PDBTitle: crystal structure of serine hydroxymethyltransferase from2 campylobacter jejuni 79 d1ucra_ not modelled 14.3 56 Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Dissimilatory sulfite reductase DsvD 80 c2d6fA_ not modelled 14.0 22 PDB header:ligase/rna Chain: A: PDB Molecule:glutamyl-trna(gln) amidotransferase subunit d; PDBTitle: crystal structure of glu-trna(gln) amidotransferase in the2 complex with trna(gln) 81 d1tqxa_ not modelled 13.8 15 Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:D-ribulose-5-phosphate 3-epimerase 82 d2ctza1 not modelled 13.6 15 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Cystathionine synthase-like 83 d1wbha1 not modelled 13.6 15 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 84 d1v0wa1 not modelled 13.6 12 Fold:Phospholipase D/nuclease Superfamily:Phospholipase D/nuclease Family:Phospholipase D 85 d2q02a1 not modelled 13.3 12 Fold:TIM beta/alpha-barrel Superfamily:Xylose isomerase-like Family:IolI-like 86 d1a3xa2 not modelled 13.2 11 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate kinase 87 c2e85B_ not modelled 11.8 0 PDB header:hydrolase Chain: B: PDB Molecule:hydrogenase 3 maturation protease; PDBTitle: crystal structure of the hydrogenase 3 maturation protease 88 d1sgva1 not modelled 11.8 35 Fold:PUA domain-like Superfamily:PUA domain-like Family:PUA domain 89 c2jwlB_ not modelled 11.3 13 PDB header:membrane protein Chain: B: PDB Molecule:protein tolr; PDBTitle: solution structure of periplasmic domain of tolr from h.2 influenzae with saxs data 90 d1vmia_ not modelled 10.8 16 Fold:Isocitrate/Isopropylmalate dehydrogenase-like Superfamily:Isocitrate/Isopropylmalate dehydrogenase-like Family:Phosphotransacetylase 91 c1vmiA_ not modelled 10.8 16 PDB header:transferase Chain: A: PDB Molecule:putative phosphate acetyltransferase; PDBTitle: crystal structure of putative phosphate acetyltransferase2 (np_416953.1) from escherichia coli k12 at 2.32 a resolution 92 c3exsB_ not modelled 10.6 12 PDB header:lyase Chain: B: PDB Molecule:rmpd (hexulose-6-phosphate synthase); PDBTitle: crystal structure of kgpdc from streptococcus mutans in2 complex with d-r5p 93 c2zdsB_ not modelled 10.6 11 PDB header:dna binding protein Chain: B: PDB Molecule:putative dna-binding protein; PDBTitle: crystal structure of sco6571 from streptomyces coelicolor2 a3(2) 94 d1cfza_ not modelled 10.5 33 Fold:Phosphorylase/hydrolase-like Superfamily:HybD-like Family:Hydrogenase maturating endopeptidase HybD 95 d1t4ba1 not modelled 10.3 7 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain 96 d2d6fa2 not modelled 10.3 22 Fold:Glutaminase/Asparaginase Superfamily:Glutaminase/Asparaginase Family:Glutaminase/Asparaginase 97 c3pu6A_ not modelled 10.1 8 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: the crystal structure of an uncharacterized protein from wolinella2 succinogenes 98 d1mxsa_ not modelled 9.8 17 Fold:TIM beta/alpha-barrel Superfamily:Aldolase Family:Class I aldolase 99 c2xsbA_ not modelled 9.8 13 PDB header:hydrolase Chain: A: PDB Molecule:hyaluronoglucosaminidase; PDBTitle: ogoga pugnac complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0