BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (1148 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=B... 2358 0.0 UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=ce... 1550 0.0 UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 T... 1322 0.0 UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=She... 1271 0.0 UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Ga... 1153 0.0 UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=G... 1112 0.0 UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xa... 1095 0.0 UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=P... 1080 0.0 UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Bet... 1071 0.0 UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Bur... 1058 0.0 UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Be... 1042 0.0 UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Pr... 1007 0.0 UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Aci... 998 0.0 UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bac... 973 0.0 UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=bet... 972 0.0 UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Fr... 961 0.0 UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bac... 901 0.0 UniRef50_P57381 Transcription-repair-coupling factor n=4 Tax=Buc... 887 0.0 UniRef50_A5EV48 Transcription-repair coupling factor n=2 Tax=Car... 872 0.0 UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic... 848 0.0 UniRef50_Q89AK2 Transcription-repair-coupling factor n=3 Tax=Gam... 795 0.0 UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Del... 793 0.0 UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=ce... 791 0.0 UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Des... 783 0.0 UniRef50_B6ISZ9 Transcription-repair coupling factor n=96 Tax=Al... 766 0.0 UniRef50_D2LDK6 Transcription-repair coupling factor n=1 Tax=Rho... 761 0.0 UniRef50_Q0F085 Transcription-repair coupling factor n=1 Tax=Mar... 759 0.0 UniRef50_A5V6G5 Transcription-repair coupling factor n=2 Tax=Sph... 757 0.0 UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Hal... 754 0.0 UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Aci... 750 0.0 UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Fir... 741 0.0 UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chl... 741 0.0 UniRef50_B0U870 Transcription-repair coupling factor n=86 Tax=Al... 740 0.0 UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Ros... 730 0.0 UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moo... 728 0.0 UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 725 0.0 UniRef50_Q6ARL4 Related to transcription-repair coupling factor ... 724 0.0 UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=The... 716 0.0 UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Pep... 716 0.0 UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=B... 714 0.0 UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=del... 713 0.0 UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=The... 713 0.0 UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Des... 712 0.0 UniRef50_A9G788 Transcription-repair coupling factor n=3 Tax=Pro... 710 0.0 UniRef50_Q8D3A2 Mfd protein n=1 Tax=Wigglesworthia glossinidia e... 706 0.0 UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syn... 699 0.0 UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Her... 696 0.0 UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Sta... 694 0.0 UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71... 693 0.0 UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Fir... 693 0.0 UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Nat... 691 0.0 UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Det... 690 0.0 UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Des... 689 0.0 UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clo... 689 0.0 UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clo... 686 0.0 UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Des... 680 0.0 UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Des... 680 0.0 UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 678 0.0 UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lac... 676 0.0 UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clo... 675 0.0 UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Amm... 673 0.0 UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coproco... 670 0.0 UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myx... 669 0.0 UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clo... 669 0.0 UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=St... 668 0.0 UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Cl... 667 0.0 UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamil... 666 0.0 UniRef50_Q6MGN1 Transcription-repair coupling factor n=2 Tax=Pro... 665 0.0 UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Car... 659 0.0 UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Vei... 657 0.0 UniRef50_C5NXX8 Transcription-repair coupling factor n=1 Tax=Gem... 655 0.0 UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lac... 654 0.0 UniRef50_C6A8D1 Transcription-repair coupling factor n=17 Tax=Ac... 653 0.0 UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostri... 652 0.0 UniRef50_C6XGB7 Transcription-repair coupling factor n=1 Tax=Can... 651 0.0 UniRef50_B0VGK6 Putative transcription-repair coupling factor n=... 650 0.0 UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sph... 644 0.0 UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax... 643 0.0 UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Ba... 643 0.0 UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostri... 643 0.0 UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Ac... 642 0.0 UniRef50_B5YFB2 Transcription-repair coupling factor n=2 Tax=Dic... 642 0.0 UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Lep... 640 0.0 UniRef50_B8IZ90 Transcription-repair coupling factor n=3 Tax=Des... 640 0.0 UniRef50_A4A0Y1 Transcription-repair coupling factor n=1 Tax=Bla... 640 0.0 UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bac... 640 0.0 UniRef50_A6CB65 Transcription-repair coupling factor n=2 Tax=Pla... 640 0.0 UniRef50_C2KSG9 Possible transcription-repair coupling factor n=... 636 e-180 UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamil... 633 e-179 UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=La... 632 e-179 UniRef50_C6X2W6 Transcription-repair coupling factor n=17 Tax=Ba... 630 e-179 UniRef50_A6GBX4 Transcription-repair coupling factor n=1 Tax=Ple... 629 e-178 UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rot... 628 e-178 UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Cht... 625 e-177 UniRef50_Q72AT7 Transcription-repair coupling factor n=5 Tax=Des... 624 e-177 UniRef50_C0BHL1 Transcription-repair coupling factor n=1 Tax=Fla... 621 e-176 UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syn... 621 e-176 UniRef50_Q7UQN7 Transcription-repair coupling factor n=1 Tax=Rho... 620 e-176 UniRef50_UPI00016C571B transcription-repair coupling factor n=1 ... 619 e-175 UniRef50_D2RAQ2 Transcription-repair coupling factor n=6 Tax=Act... 616 e-174 UniRef50_C0GM56 Transcription-repair coupling factor n=1 Tax=Des... 616 e-174 UniRef50_Q1AXK2 Transcription-repair coupling factor n=1 Tax=Rub... 615 e-174 UniRef50_B8DPF5 Transcription-repair coupling factor n=6 Tax=Des... 612 e-173 UniRef50_B5YL15 Transcription-repair coupling factor n=1 Tax=The... 610 e-173 UniRef50_C8P217 Transcription-repair-coupling factor (ATP-depend... 610 e-172 UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamil... 610 e-172 UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotro... 608 e-172 UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Ana... 608 e-172 UniRef50_Q11PH6 Transcription-repair coupling factor n=5 Tax=Bac... 608 e-172 UniRef50_Q04H97 Transcription-repair coupling factor (Superfamil... 605 e-171 UniRef50_Q1RI82 Transcription-repair-coupling factor n=16 Tax=Ri... 605 e-171 UniRef50_B6AN99 Transcription-repair coupling factor n=2 Tax=Lep... 603 e-171 UniRef50_C9RNX3 Transcription-repair coupling factor n=1 Tax=Fib... 603 e-170 UniRef50_Q255X7 Transcription-repair coupling factor-superfamily... 602 e-170 UniRef50_Q0B0S4 Transcription-repair coupling factor-superfamily... 601 e-170 UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clo... 598 e-169 UniRef50_D1N873 Transcription-repair coupling factor n=1 Tax=Vic... 598 e-169 UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Ato... 598 e-169 UniRef50_A9NE83 Transcription-repair coupling factor (Superfamil... 597 e-169 UniRef50_Q2GHL2 Transcription-repair coupling factor n=5 Tax=can... 597 e-169 UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cy... 597 e-169 UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Aci... 597 e-168 UniRef50_C6HVP9 Transcription-repair coupling factor n=1 Tax=Lep... 596 e-168 UniRef50_C1SMC7 Transcription-repair coupling factor Mfd n=1 Tax... 594 e-168 UniRef50_C9KMW0 Transcription-repair coupling factor n=3 Tax=Vei... 593 e-168 UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Ta... 593 e-167 UniRef50_UPI0001C317DD transcription-repair coupling factor n=1 ... 592 e-167 UniRef50_B2S2U1 Transcription-repair coupling factor n=4 Tax=Tre... 591 e-167 UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Ori... 590 e-166 UniRef50_C7PET5 Transcription-repair coupling factor n=1 Tax=Chi... 590 e-166 UniRef50_O51568 Transcription-repair-coupling factor n=24 Tax=Bo... 589 e-166 UniRef50_D0LU01 Transcription-repair coupling factor n=1 Tax=Hal... 588 e-166 UniRef50_Q1Q1A4 Similar to transcription-repair coupling factor ... 588 e-166 UniRef50_D2MMW5 Transcription-repair coupling factor n=2 Tax=Ery... 588 e-166 UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bac... 587 e-166 UniRef50_B5JG36 Transcription-repair coupling factor n=1 Tax=Ver... 586 e-165 UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Aci... 586 e-165 UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostri... 586 e-165 UniRef50_C4LHL4 Transcription-repair coupling factor n=5 Tax=Bac... 586 e-165 UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Pep... 585 e-165 UniRef50_C9LF18 Transcription-repair coupling factor n=1 Tax=Pre... 582 e-164 UniRef50_Q5PBQ9 Transcription repair coupling factor n=7 Tax=Ana... 582 e-164 UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerof... 581 e-164 UniRef50_A1ZRM8 Transcription-repair coupling factor n=2 Tax=Bac... 580 e-163 UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostri... 579 e-163 UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax... 578 e-163 UniRef50_B1ZYU7 Transcription-repair coupling factor n=2 Tax=Opi... 578 e-163 UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttle... 577 e-163 UniRef50_D2R0K5 Transcription-repair coupling factor n=1 Tax=Pir... 577 e-162 UniRef50_C8PBN6 Transcription-repair-coupling factor n=1 Tax=Lac... 575 e-162 UniRef50_C5VMF4 Transcription-repair coupling factor n=2 Tax=Pre... 575 e-162 UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Co... 575 e-162 UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Bra... 574 e-162 UniRef50_D1R5W0 Putative uncharacterized protein n=1 Tax=Parachl... 573 e-161 UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostri... 572 e-161 UniRef50_Q6MB04 Probable transcription-repair coupling factor mf... 572 e-161 UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Vei... 570 e-160 UniRef50_Q2S6G5 Transcription-repair coupling factor n=2 Tax=Rho... 569 e-160 UniRef50_A6DFV9 Transcription-repair coupling factor, MFD (Super... 566 e-159 UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Rum... 565 e-159 UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostri... 563 e-158 UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superf... 560 e-157 UniRef50_A6L2L5 Transcription-repair coupling factor n=49 Tax=Ba... 558 e-157 UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Cor... 554 e-156 UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=... 553 e-155 UniRef50_C3WG56 Transcription-repair coupling factor n=6 Tax=Fus... 552 e-155 UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 ... 551 e-155 UniRef50_A6NQ58 Putative uncharacterized protein n=1 Tax=Bactero... 550 e-154 UniRef50_Q5SJW3 Transcription-repair coupling factor n=3 Tax=The... 550 e-154 UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclass... 547 e-154 UniRef50_C9LLX5 Transcription-repair coupling factor n=1 Tax=Dia... 544 e-153 UniRef50_C7H0W1 Transcription-repair coupling factor n=1 Tax=Eub... 544 e-153 UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cya... 543 e-152 UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Act... 542 e-152 UniRef50_B1H078 Transcription-repair coupling factor Mfd n=1 Tax... 540 e-151 UniRef50_A1BEU9 Transcription-repair coupling factor n=12 Tax=Ch... 539 e-151 UniRef50_C9MMN8 Transcription-repair coupling factor n=1 Tax=Pre... 536 e-150 UniRef50_A4E9V3 Putative uncharacterized protein n=3 Tax=Collins... 535 e-150 UniRef50_Q83N19 Transcription-repair coupling factor n=4 Tax=Bac... 533 e-149 UniRef50_D1PXI7 Transcription-repair coupling factor n=7 Tax=Bac... 533 e-149 UniRef50_UPI0001745840 transcription-repair coupling factor n=1 ... 529 e-148 UniRef50_C1A9L3 Transcription-repair coupling factor n=1 Tax=Gem... 523 e-146 UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Ana... 521 e-146 UniRef50_C0QQC7 Transcription-repair-coupling factor (Trcf) (ATP... 521 e-146 UniRef50_D1Y8J9 Transcription-repair-coupling factor n=2 Tax=Syn... 521 e-146 UniRef50_A2BWG1 Transcriptional-repair coupling factor n=11 Tax=... 520 e-145 UniRef50_C5CIP9 Transcription-repair coupling factor n=1 Tax=Kos... 518 e-145 UniRef50_C1XT24 Transcription-repair coupling factor (Superfamil... 516 e-144 UniRef50_C1TQS1 Transcription-repair coupling factor Mfd n=1 Tax... 514 e-144 UniRef50_B9KVH0 DEAD/DEAH box helicase domain protein n=2 Tax=Rh... 510 e-142 UniRef50_C7M0K8 Transcription-repair coupling factor n=1 Tax=Aci... 510 e-142 UniRef50_Q1J0Y7 Transcription factor CarD n=3 Tax=Deinococcus Re... 509 e-142 UniRef50_C7NE08 Transcription-repair coupling factor n=4 Tax=Fus... 509 e-142 UniRef50_B9K8D6 Transcription-repair coupling factor n=1 Tax=The... 506 e-141 UniRef50_B1LBI8 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 506 e-141 UniRef50_B2V9E1 DEAD/DEAH box helicase domain protein n=2 Tax=Su... 502 e-140 UniRef50_A8F4U5 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 500 e-139 UniRef50_Q8RH90 Transcription-repair coupling factor n=12 Tax=Fu... 500 e-139 UniRef50_A7HNV8 DEAD/DEAH box helicase domain protein n=3 Tax=Th... 498 e-139 UniRef50_B2KBP0 DEAD/DEAH box helicase domain protein n=1 Tax=El... 496 e-138 UniRef50_A9BHZ6 DEAD/DEAH box helicase domain protein n=1 Tax=Pe... 490 e-136 UniRef50_D1B5L3 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 482 e-134 UniRef50_C5F1R4 Transcription-repair coupling factor n=2 Tax=Hel... 467 e-129 UniRef50_C6B9D3 DEAD/DEAH box helicase domain protein n=1 Tax=Rh... 467 e-129 UniRef50_Q9ZJ57 Transcription-repair-coupling factor n=19 Tax=He... 466 e-129 UniRef50_D1B3F9 Transcription-repair coupling factor n=14 Tax=Ca... 466 e-129 UniRef50_C3XNZ2 Transcription-repair coupling factor n=1 Tax=Hel... 464 e-128 UniRef50_A8ERW1 Transcription-repair coupling factor n=13 Tax=Ep... 462 e-128 UniRef50_Q1YKV9 Putative transcription-repair coupling factor n=... 454 e-126 UniRef50_Q4HTG2 Transcription-repair coupling factor n=2 Tax=Cam... 450 e-124 UniRef50_A4YQE5 Putative transcription repair coupling factor n=... 447 e-123 UniRef50_D1AW65 DEAD/DEAH box helicase domain protein n=1 Tax=St... 441 e-122 UniRef50_C3XFZ1 Transcription-repair coupling factor n=2 Tax=Cam... 429 e-118 UniRef50_A9S9T2 Predicted protein n=1 Tax=Physcomitrella patens ... 425 e-117 UniRef50_C7CIQ8 DEAD/DEAH box helicase domain protein n=9 Tax=Al... 407 e-111 UniRef50_B7GBS8 Predicted protein n=2 Tax=Bacillariophyta RepID=... 398 e-109 UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaeroba... 396 e-108 UniRef50_A4RX81 Predicted protein n=4 Tax=Mamiellales RepID=A4RX... 390 e-106 UniRef50_Q2R377 CarD-like transcriptional regulator family prote... 390 e-106 UniRef50_Q89L81 Bll4667 protein n=2 Tax=Bradyrhizobium RepID=Q89... 385 e-105 UniRef50_B9GNF6 Predicted protein n=2 Tax=rosids RepID=B9GNF6_POPTR 378 e-103 UniRef50_B7F5N3 cDNA clone:J013044D20, full insert sequence n=6 ... 369 e-100 UniRef50_C0BPF2 Helicase domain protein (Fragment) n=2 Tax=Bacte... 362 6e-98 UniRef50_UPI0000D5484E transcription-repair coupling factor n=1 ... 332 6e-89 UniRef50_B5Y798 ATP-dependent DNA helicase RecG n=1 Tax=Coprothe... 294 1e-77 UniRef50_Q1D6X0 ATP-dependent DNA helicase RecG n=9 Tax=Bacteria... 293 3e-77 UniRef50_B5YEA4 ATP-dependent DNA helicase RecG n=1 Tax=Dictyogl... 282 5e-74 UniRef50_Q1PZ44 Similar to DNA helicase n=1 Tax=Candidatus Kuene... 282 6e-74 UniRef50_B5YJX3 ATP-dependent DNA helicase RecG n=1 Tax=Thermode... 280 3e-73 UniRef50_B8E2R9 ATP-dependent DNA helicase RecG n=1 Tax=Dictyogl... 280 3e-73 UniRef50_Q04GL6 ATP-dependent DNA helicase RecG n=3 Tax=Leuconos... 278 9e-73 UniRef50_B2KB03 ATP-dependent DNA helicase RecG n=1 Tax=Elusimic... 278 1e-72 UniRef50_Q6MKR1 ATP-dependent DNA helicase RecG n=1 Tax=Bdellovi... 277 2e-72 UniRef50_A5GF54 ATP-dependent DNA helicase RecG n=15 Tax=Bacteri... 275 8e-72 UniRef50_C9RAM3 ATP-dependent DNA helicase RecG n=2 Tax=Clostrid... 273 2e-71 UniRef50_B6YQA3 ATP-dependent DNA helicase RecG n=3 Tax=Bacteroi... 273 2e-71 UniRef50_B3EMY0 ATP-dependent DNA helicase RecG n=12 Tax=Chlorob... 272 6e-71 UniRef50_C8PD65 DNA helicase RecG n=2 Tax=Lactobacillus RepID=C8... 271 1e-70 UniRef50_B5Y8L2 Transcription-repair-coupling factor (Trcf) (ATP... 270 2e-70 UniRef50_C4FT75 Putative uncharacterized protein n=1 Tax=Catonel... 270 2e-70 UniRef50_C7NDD0 ATP-dependent DNA helicase RecG n=19 Tax=Bacteri... 270 3e-70 UniRef50_B1C9D0 Putative uncharacterized protein n=1 Tax=Anaerof... 270 3e-70 UniRef50_C0BP78 Transcription factor CarD n=1 Tax=Flavobacteria ... 269 4e-70 UniRef50_Q55681 ATP-dependent DNA helicase recG n=5 Tax=Cyanobac... 267 2e-69 UniRef50_C1TK34 ATP-dependent DNA helicase RecG n=1 Tax=Dethiosu... 266 3e-69 UniRef50_B9L2A2 ATP-dependent DNA helicase RecG n=1 Tax=Thermomi... 265 7e-69 UniRef50_D2MQ66 Putative ATP-dependent DNA helicase RecG n=1 Tax... 265 8e-69 UniRef50_B1L291 ATP-dependent DNA helicase RecG n=1 Tax=Clostrid... 265 9e-69 UniRef50_Q54900 ATP-dependent DNA helicase recG n=129 Tax=Bacill... 265 1e-68 UniRef50_Q7V1U9 ATP-dependent DNA helicase recG n=8 Tax=Prochlor... 265 1e-68 >UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=Bacteria RepID=MFD_ECOLI Length = 1148 Score = 2358 bits (6110), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1148/1148 (100%), Positives = 1148/1148 (100%) Query: 1 MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60 MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS Sbjct: 1 MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60 Query: 61 QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH Sbjct: 61 QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY Sbjct: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD Sbjct: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL 300 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL Sbjct: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL 300 Query: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 360 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD Sbjct: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 360 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD Sbjct: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 Query: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG Sbjct: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA Sbjct: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE Sbjct: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL Sbjct: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF Sbjct: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP Sbjct: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI Sbjct: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR Sbjct: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG Sbjct: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV Sbjct: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG Sbjct: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 Query: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1140 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR Sbjct: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1140 Query: 1141 ELEENAIA 1148 ELEENAIA Sbjct: 1141 ELEENAIA 1148 >UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=cellular organisms RepID=MFD_HAEIN Length = 1146 Score = 1550 bits (4012), Expect = 0.0, Method: Compositional matrix adjust. Identities = 732/1136 (64%), Positives = 926/1136 (81%), Gaps = 3/1136 (0%) Query: 9 LPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVM 68 +P + + ++LG + A A ++EI+E++ V++ PD ++A+RL +S+ + Q V Sbjct: 10 IPTQPNDHKILGNVLPGADALAISEISEQNQNLTVVVTPDTRSAVRLSRVLSELSSQDVC 69 Query: 69 NLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHAL 128 DWETLPYD+FSPHQ+IISSRLS L+ L ++G+ ++P++TLMQR+CP +L + L Sbjct: 70 LFPDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLMQRLCPPQYLQHNVL 129 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 ++KKG RL D +R QL++AGYR V+QV+EHGEYA RGALLDLFPMGS +P+RLDFFDDE Sbjct: 130 LIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPMGSAVPFRLDFFDDE 189 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF-EVKRDPEHIYQQ 247 IDS+R FDVD+QRTL+E+ +INLLPAHEFPTD IE FR+Q+R+TF E++RDPEHIYQQ Sbjct: 190 IDSIRTFDVDTQRTLDEISSINLLPAHEFPTDDKGIEFFRAQFRETFGEIRRDPEHIYQQ 249 Query: 248 VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRG 307 +SKGTL +GIEYWQPLFF+E + LF Y P TL V+ + +T ERF D R+E R Sbjct: 250 ISKGTLISGIEYWQPLFFAE-MATLFDYLPEQTLFVDMENNQTQGERFYQDAKQRYEQRK 308 Query: 308 VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQ 367 VDPMRPLL P+ LWL VDE+ LK++PR+ K E + + NL LP++ +Q+QQ Sbjct: 309 VDPMRPLLSPEKLWLNVDEVNRRLKSYPRITFKAEKVRSSVRQKNLPVAALPEVTIQSQQ 368 Query: 368 KAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMI 427 K PL LR+F+E F G V+FSVE+EGRRE L +LL+ +K+ P++I L++ + L++ Sbjct: 369 KEPLGQLRQFIEHFKGNVLFSVETEGRRETLLDLLSPLKLKPKQIQSLEQIENEKFSLLV 428 Query: 428 GAAEHGFV-DTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 + E GF+ + +A+I E++LLG+R+ +R +D R+TINPDTL+RNLAEL IGQPVVHL Sbjct: 429 SSLEQGFIIEQSLPVAIIGEANLLGKRIQQRSRDKRKTINPDTLVRNLAELKIGQPVVHL 488 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLG 546 +HGVGRY G+ TL+ GGI EYL+L YAN++KLYVPV+SLHLISRY GG++E+APLHKLG Sbjct: 489 DHGVGRYGGLVTLDTGGIKAEYLLLNYANESKLYVPVTSLHLISRYVGGSDESAPLHKLG 548 Query: 547 GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606 +AW+++RQKAAEK+RDVAAELLD+YAQR AK+GFAFK+DRE++Q F +FPFE T DQ Sbjct: 549 NEAWAKSRQKAAEKIRDVAAELLDVYAQREAKKGFAFKYDREEFQQFSATFPFEETYDQE 608 Query: 607 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 666 AINAV+SDMCQP AMDRLVCGDVGFGKTEVAMRAAFLAV NHKQVAVLVPTTLLAQQHY Sbjct: 609 MAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLLAQQHY 668 Query: 667 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 +NF+DRFAN PV +E++SRF++AKEQ QIL +AEGK+DILIGTHKL+QSDVKF DLGLL Sbjct: 669 ENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKFNDLGLL 728 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 I+DEEHRFGV KE+IK +RAN+DILTLTATPIPRTLNMAM+G+RDLSII+TPPARRL++ Sbjct: 729 IIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSI 788 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 KTFVR+ D +VVREAILREILRGGQVYYL+NDV +I+ AE+L LVPEAR+ +GHGQMR Sbjct: 789 KTFVRQNDDLVVREAILREILRGGQVYYLHNDVASIENTAEKLTALVPEARVIVGHGQMR 848 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 ERELERVM+DF+HQR+NVLVC+TIIETGID+PTANTIIIERADHFGLAQLHQLRGRVGRS Sbjct: 849 ERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRGRVGRS 908 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 HHQAYA+LLTP PK MT DA++RL+A+ +L++LGAGF LATHDLEIRGAGELLG EQSG Sbjct: 909 HHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGNEQSGQ 968 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026 +E+IGFSLYMELL+ AV ALK GREPSLE+LT QQ ++ELR+P+LLPDD++ DVN RLSF Sbjct: 969 IESIGFSLYMELLDAAVKALKEGREPSLEELTQQQADIELRVPALLPDDYLGDVNMRLSF 1028 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGV 1086 YKRIA+A+++ EL+E+KVELIDRFGLLPD + LL I LR + L + +++ +GG Sbjct: 1029 YKRIAAAESKAELDELKVELIDRFGLLPDATKNLLQITELRLLVEPLNVVRIDAGTQGGF 1088 Query: 1087 IEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 IEF+ K VNP I L+QK+P YR DGP + KF++DLS+ K R+E+V +R + Sbjct: 1089 IEFSAKAQVNPDKFIQLIQKEPIVYRFDGPFKFKFMKDLSDNKVRLEFVVDLLRTI 1144 >UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 Tax=Gammaproteobacteria RepID=B3PFQ1_CELJU Length = 1184 Score = 1322 bits (3422), Expect = 0.0, Method: Compositional matrix adjust. Identities = 638/1134 (56%), Positives = 850/1134 (74%), Gaps = 7/1134 (0%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT---DQM-V 67 + G ++ G L G+A A + A +AG ++IAPD +A+RL E+S FT +Q+ V Sbjct: 45 RLGNRQYWGNLHGSAQALAIVNAARNYAGLSLVIAPDTSSAIRLQTELSFFTGGDEQLPV 104 Query: 68 MNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHA 127 ++LADWETLPYDS SPHQDIIS RL TLY+LPT +RG+L+VP+ TL+QR+ P S+L G++ Sbjct: 105 LHLADWETLPYDSISPHQDIISERLRTLYRLPTTRRGILVVPITTLLQRLMPRSYLLGNS 164 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 L++ G++L D LR L+ AGY VD V EHGE+A RGALLD+FPMGS+LPYR+D FDD Sbjct: 165 LMLAVGEQLDIDQLRHNLERAGYHAVDTVYEHGEFAVRGALLDIFPMGSDLPYRIDLFDD 224 Query: 188 EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 247 E+++LR FD ++Q T+++VE I LLPA EFP +K I LF+ QW + F+V ++Q Sbjct: 225 EVETLRTFDPETQMTIDKVEKIQLLPAKEFPLNKPGINLFKQQWLERFDVNHKECPVFQD 284 Query: 248 VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRG 307 +S G P G+EY+ PLFF + LF Y P NTL+ G+ E SAE F + L R+E+R Sbjct: 285 ISAGISPPGVEYYLPLFF-DSCSNLFDYLPQNTLVYALGNFEKSAENFWLELLRRYESRR 343 Query: 308 VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQ 367 VDP+RPLLPP+ ++L +DEL+++LK + R + + L +A + N + P+L ++AQ Sbjct: 344 VDPLRPLLPPKDIYLSIDELYTQLKPYSRTFISNDILEERAGHYNFASCQPPNLPIRAQA 403 Query: 368 KAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKI--APQRIMRLDEASDRGRYL 425 + PL A+ FL + G V+F ES GRRE L ELL RI++ AP + +S + Sbjct: 404 EQPLAAIEAFLMEYHGRVLFCAESAGRRETLLELLGRIRVRPAPAESWQAFLSSKESIAI 463 Query: 426 MIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVH 485 I E G + LI ES L GER+ ++R+ + N + +++NL EL IG PVVH Sbjct: 464 TIAPLEQGLQQQQPDTVLIAESQLFGERIQQQRRRKQAQDNSELVVKNLTELKIGAPVVH 523 Query: 486 LEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKL 545 ++HGVGRY G+ T+ T E+L L YA+DAKLYVPV+SLHLISRY+G ++ APLHKL Sbjct: 524 IDHGVGRYRGLETITVDNQTNEFLTLEYADDAKLYVPVTSLHLISRYSGAEDDLAPLHKL 583 Query: 546 GGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQ 605 G ++W +A++KAAE++RD AAELL++YA+RAA++GFAF + Y F SFPFE TPDQ Sbjct: 584 GSESWQKAKRKAAEQIRDTAAELLEVYARRAARKGFAFPDPQTAYAAFSASFPFEETPDQ 643 Query: 606 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 665 +AI AV+ DM P MDRLVCGDVGFGKTEVAMRAAF+A KQVA+L PTTLLAQQH Sbjct: 644 QRAIEAVVKDMLSPKPMDRLVCGDVGFGKTEVAMRAAFVASHAGKQVAILAPTTLLAQQH 703 Query: 666 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 725 Y++ +DRFA WP+ IE++SRFR+ KE Q+L +AEGK+DI++GTHKLLQ D+KFK+LGL Sbjct: 704 YESLKDRFAEWPITIEVLSRFRTTKEVNQVLERLAEGKVDIIVGTHKLLQPDIKFKNLGL 763 Query: 726 LIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785 LI+DEEHRFGVR KE+IKA+RA +DILTLTATPIPRTLNM+M+G+RDLSIIATPPARRL+ Sbjct: 764 LIIDEEHRFGVRQKEQIKALRAEIDILTLTATPIPRTLNMSMAGIRDLSIIATPPARRLS 823 Query: 786 VKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQM 845 VKTFVR YD V++EAILREILRGGQVYYL+N+V+ I+K A L EL+PEARIA+GHGQM Sbjct: 824 VKTFVRTYDEAVIKEAILREILRGGQVYYLHNEVDTIEKVARELQELIPEARIAVGHGQM 883 Query: 846 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 905 RER+LERVM+DF+H+RFN++VCTTIIETGIDIP+ANTIII RAD FGLAQLHQLRGRVGR Sbjct: 884 RERDLERVMSDFYHKRFNIMVCTTIIETGIDIPSANTIIINRADKFGLAQLHQLRGRVGR 943 Query: 906 SHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 SHHQAYA+LLTP +AMT DA KRLEAI++ EDLGAGF LAT+D+EIRGAGELLGEEQSG Sbjct: 944 SHHQAYAYLLTPERRAMTDDAVKRLEAISAAEDLGAGFTLATYDMEIRGAGELLGEEQSG 1003 Query: 966 SMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLS 1025 ++TIGFSLYME+L+ AV A++ G++ +E + ++ LR+P+L+P D++PDV+ RL Sbjct: 1004 QIQTIGFSLYMEMLDRAVKAIRQGKQADIEQALKESIDINLRIPALIPSDYLPDVHLRLV 1063 Query: 1026 FYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGG 1085 YKR+A+A+ L +++VE+IDRFGLLPD + L + +++ A++LGI K+E N +GG Sbjct: 1064 MYKRLANAENAESLRDLQVEMIDRFGLLPDAVKNLFRVTQIKITAEQLGITKIEANSRGG 1123 Query: 1086 VIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFM 1139 IEF+ V+P ++ L+Q QP+ Y+L+G +LKF QDL + R++ + + + Sbjct: 1124 KIEFSGATGVDPLQIVKLVQSQPRVYKLEGANQLKFAQDLESTEKRLQTLSELL 1177 >UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=Shewanella RepID=Q12NL8_SHEDO Length = 1179 Score = 1271 bits (3290), Expect = 0.0, Method: Compositional matrix adjust. Identities = 651/1175 (55%), Positives = 849/1175 (72%), Gaps = 37/1175 (3%) Query: 7 YTLP-VKAGEQ-RLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD 64 +T P VK G+Q + L L G + + +A++ + G +++ D A+ L E+ Sbjct: 7 FTPPSVKKGQQTQRLVTLGGLSQSLSLAQLILANKGTSLIVTHDTPTAMLLETELHYLLA 66 Query: 65 QMVMNLA---DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 +NL D ETLPYDSFSPHQD+IS RL TL QL + +IVP+NTLM R+ P S Sbjct: 67 NHDVNLCLFPDRETLPYDSFSPHQDLISQRLETLAQLGNLGHNAVIVPINTLMVRLPPQS 126 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 +L + +V+KKG + +R L GY V+QV EHGE+A RG++LD+FP G + P R Sbjct: 127 YLSANVMVLKKGDTYALQTVRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPTGCQQPLR 186 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEV-KRD 240 ++ FDDEI+S+R FDV++QR+ V+AI +LPA EF TD AAIE FR ++R FEV ++ Sbjct: 187 IELFDDEIESIRHFDVETQRSEVAVDAIRMLPAKEFATDSAAIEGFRQRYRRRFEVISKE 246 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL 300 E +YQ VS+ +PAGIE + PLFF + LF Y P NT L+ GD++ + + Sbjct: 247 AESVYQLVSRNLMPAGIENYLPLFFDDT-ASLFDYLPENTQLITLGDIDKACANHLTEIH 305 Query: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQK--- 357 R+E+R VDP+RPLL P L+L ++LF+ K + R Q H P A G +K Sbjct: 306 HRYEDRRVDPLRPLLAPHELYLTQEQLFAAFKPYKRSQFFI-HTPGDAQLGEDGTKKDVA 364 Query: 358 ------------LPDLAVQAQQKAPLDALRKFLETFDG-PVVFSVESEGRREALGELLAR 404 LPD+ + K PL++L+ F + DG P++FS ESEGRREAL LL++ Sbjct: 365 KKDSALQANVAPLPDINANHKLKQPLESLQAFAQ--DGKPLLFSAESEGRREALLALLSK 422 Query: 405 IKIAPQRIMRLDEASDRG-------RYLMIGAAEHG--FVDTVRN-LALICESDLLGERV 454 I I P LDE D L++ G +D+ + L+LICE++L G ++ Sbjct: 423 IGIKPTLFKHLDEFLDASVPLKGPVHGLIVSPLSRGCTLLDSPKGELSLICETELFGHKI 482 Query: 455 AR-RRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTY 513 A+ RR+D ++ ++ D LI++LAEL +GQ +VHLEHGV Y G+ TL+ GG+ EYL L Y Sbjct: 483 AQQRRRDKQKQVSSDALIKDLAELKVGQAIVHLEHGVALYQGLETLDTGGLVAEYLKLEY 542 Query: 514 ANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYA 573 A KLYVPVSSLHLISRY +E+NA L+KLG + W++A++KA EK+RDVAAELLD+YA Sbjct: 543 AGGDKLYVPVSSLHLISRYNANSEDNAQLNKLGNETWAKAKKKAIEKIRDVAAELLDVYA 602 Query: 574 QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFG 633 +R ++ G A D ++Y F FP+E T DQ AI AVL+DM P +MDRLVCGDVGFG Sbjct: 603 RRQSRPGEALAIDADEYAQFAQGFPYEETVDQESAIIAVLNDMQAPTSMDRLVCGDVGFG 662 Query: 634 KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT 693 KTEVAMRAAF+AV+ KQV VLVPTTLLAQQHY+NF+DRFA+WPV IE++SRFRSAKEQ Sbjct: 663 KTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVEIEVMSRFRSAKEQE 722 Query: 694 QILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILT 753 Q+L ++EGK+DI+IGTHKLLQS+ KF DLGLLI+DEEHRFGVR KE+IKA+RANVDILT Sbjct: 723 QVLQSLSEGKVDIVIGTHKLLQSEAKFVDLGLLIIDEEHRFGVRQKEKIKALRANVDILT 782 Query: 754 LTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVY 813 LTATPIPRTLNMAMSGMRDLSIIATPPA+RLAVKTFVREY +REA+LREILRGGQVY Sbjct: 783 LTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYHQATIREALLREILRGGQVY 842 Query: 814 YLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 873 YL+N+VE I+K A+ L +L+PEAR+ GHGQMRER+LE+VM DF+HQRFNVLVCTTIIET Sbjct: 843 YLHNNVETIEKCAQDLRDLLPEARVVTGHGQMRERDLEKVMADFYHQRFNVLVCTTIIET 902 Query: 874 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAI 933 GID+P+ANTI+I+RAD FGLAQLHQLRGRVGRSHHQAYA+++TP K ++TDA+KRLEAI Sbjct: 903 GIDVPSANTIVIDRADKFGLAQLHQLRGRVGRSHHQAYAYMITPPIKLISTDARKRLEAI 962 Query: 934 ASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPS 993 +LE+LGAGF LAT DLEIRGAGELLG+EQSG + IGFSLYME+LE+AV ALK G+EPS Sbjct: 963 DALEELGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVSALKEGKEPS 1022 Query: 994 LEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLL 1053 L + + Q EV+LR+P+LLP+D++ DVN RLS YKRIA+ K+E L+E++VE IDRFGLL Sbjct: 1023 LAYMLNAQCEVDLRIPALLPEDYVSDVNMRLSMYKRIANCKSEAMLDELRVEFIDRFGLL 1082 Query: 1054 PDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRL 1113 P+P + LL+++ + QA KLG K+E + KGG IEF + + ++P ++IGLLQKQP YR+ Sbjct: 1083 PEPTKNLLELSLYKHQATKLGATKIEMHAKGGSIEFGDNHKIDPMFIIGLLQKQPNIYRM 1142 Query: 1114 DGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA 1148 +GP +L+F K R+E V + +L +++I Sbjct: 1143 EGPNKLRFAIPAESSKQRLELVATLLEQLAQHSIG 1177 >UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Gammaproteobacteria RepID=Q31GG0_THICR Length = 1159 Score = 1153 bits (2982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 576/1130 (50%), Positives = 781/1130 (69%), Gaps = 21/1130 (1%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF--TDQMVMNLADWETL 76 L ++ +A A + E A+ G VL+ +M A + + + F TD +++ +WETL Sbjct: 27 LNNISESALALI--EKAQNAPGLAVLLTENMAEANKYSELLRFFAETDYPILSFPEWETL 84 Query: 77 PYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 PYD FSPHQDIIS RL TLYQLP+ ++G+LI+PV+TL+Q+V PH F+ + +++ G+ + Sbjct: 85 PYDQFSPHQDIISQRLKTLYQLPSTKQGLLILPVSTLIQKVVPHQFIEKYTFLLQCGETV 144 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 DA QL+S+GY+ V QVMEHGE+A RG+++DL+PMGS PYRLD FDDEI+++R FD Sbjct: 145 DIDAFTRQLESSGYQRVSQVMEHGEFAVRGSIIDLYPMGSRTPYRLDLFDDEIETIRSFD 204 Query: 197 VDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAG 256 ++QR+++ +E I LLPA E+ I LFR +R F +Y+ V G G Sbjct: 205 PETQRSVDSIEQIELLPAKEYDLTPEGISLFRQNFRSHFGDDARNSQLYRSVKDGQTVDG 264 Query: 257 IEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLP 316 +EY+ LF S + F Y P++ L N GDL+ + D R++ +P P+L Sbjct: 265 LEYYLSLFHSN-IATFFDYLPSDCLFFNQGDLQAQIRQNWQDYQERYDIAQHNPDYPVLV 323 Query: 317 PQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRK 376 P L L +E FS LK + R+Q + PT A A LPDL +Q+ + PL L Sbjct: 324 PSELILSENETFSALKAFHRIQFSLQ--PTDKATATFKTYPLPDLTIQSNSEYPLAKLNA 381 Query: 377 FLETF----DGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEH 432 FL+ + +G +++ ES GRRE L +L++ PQ +L + D A + Sbjct: 382 FLDQYASEHNGRILYCAESTGRRETLLTILSK---HPQFKGKLPKQIDSWGEFKTSKAPY 438 Query: 433 GFV-----DTVR--NLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVH 485 + D+V + ++ ES + G+ V ++R+ R+ D I NL EL +GQP+VH Sbjct: 439 EIIVGPLEDSVYTDDFCILSESQIFGQTVIQKRRRKRKHSEFDNAISNLIELDLGQPIVH 498 Query: 486 LEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKL 545 +HGVGR+ G+ T+ G E+LM+ YA DAKLYVPV+SLHLISRY G + E APLHKL Sbjct: 499 FDHGVGRFLGLETMTIQGEEHEFLMIQYAGDAKLYVPVTSLHLISRYTGASAETAPLHKL 558 Query: 546 GGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQ 605 G D W +A++KAAEKVRDVAAELLDIYAQR A+ G+AF+ D E Y F FPFE TPDQ Sbjct: 559 GSDKWDKAKRKAAEKVRDVAAELLDIYAQREARPGYAFQTDEEAYARFRAGFPFEETPDQ 618 Query: 606 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 665 AI AVLSDM MDRL+CGDVGFGKTEVAMRAAF+A + KQVAVLVPTTLL+QQH Sbjct: 619 EAAIEAVLSDMKSDKPMDRLICGDVGFGKTEVAMRAAFVAAYSGKQVAVLVPTTLLSQQH 678 Query: 666 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 725 +NF++RFA+WP+RIE +SRF+SAKE QI+ V ++DI+IGTHK++Q+D++F +LGL Sbjct: 679 LENFKNRFADWPIRIEGLSRFQSAKETKQIVEAVKNNQVDIIIGTHKIIQNDMQFGNLGL 738 Query: 726 LIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785 +I+DEEHRFGVR KE++K +R VD++T+TATPIPRTLNMAM+ +RDLSIIAT PA+RLA Sbjct: 739 IIIDEEHRFGVRQKEQLKKLRTEVDVMTMTATPIPRTLNMAMNDLRDLSIIATAPAKRLA 798 Query: 786 VKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQM 845 V+TFV++++ VV+EA LREI RGGQ+Y L+N+V+ I++ AE + L+PEA++ HGQM Sbjct: 799 VQTFVQDWNPDVVKEACLREIRRGGQIYLLFNNVDKIEQMAEEIQALLPEAKVETAHGQM 858 Query: 846 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 905 ERELE+VM +F+H+RFN+LVCTTIIETGIDIPTANTI+I RAD FGLAQLHQLRGRVGR Sbjct: 859 HERELEQVMQNFYHRRFNILVCTTIIETGIDIPTANTILIHRADKFGLAQLHQLRGRVGR 918 Query: 906 SHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 SHH+AYA+L T MT DA+KRL AIA + LGAGF LA+HDLEIRGAGELLG+ QSG Sbjct: 919 SHHKAYAYLFTAGKALMTKDAEKRLTAIAKHDTLGAGFMLASHDLEIRGAGELLGDGQSG 978 Query: 966 SMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLS 1025 + IGF LY +LL+ AV ALK+G++P L+ EVEL MP+L+P+D++PD++TRL Sbjct: 979 QIHEIGFGLYSDLLDRAVRALKSGKQPELDAKLHTGAEVELGMPALIPEDYLPDIHTRLV 1038 Query: 1026 FYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGG 1085 FYKRIASA+ N L+E++VE+IDRFGLLPD + L + R++ L ++K+E +E Sbjct: 1039 FYKRIASAEDNNALQELEVEMIDRFGLLPDQVKNLFETTRVKLVIDALNLKKVEASEAMI 1098 Query: 1086 VIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWV 1135 I+F ++NP LI L+Q P++Y+L G LK+ + E K RI+ + Sbjct: 1099 RIQFGSNPNINPLELIKLIQNHPKNYQLKGQIELKYFDTMLEMKQRIQAI 1148 >UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=Gammaproteobacteria RepID=Q6FCF0_ACIAD Length = 1171 Score = 1112 bits (2876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 577/1141 (50%), Positives = 785/1141 (68%), Gaps = 16/1141 (1%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL 70 +KAGE+R +G L G++ A L EI ++H +V++ + Q+ +L E+ +F Sbjct: 30 LKAGEKRWIGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHLAQLESEL-EFYGVKPTIF 88 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVM 130 DWE LPYD SPHQDI+S RL+ L +P Q GVL++ +TL QRV P ++ G + Sbjct: 89 PDWEILPYDRLSPHQDIVSERLAILSNMP--QTGVLLISASTLAQRVAPIGWVLGEHFDI 146 Query: 131 KKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEID 190 + GQ+L + + +L AGY VD V +HGE+A RG+++D++ G E P R+D FDDEID Sbjct: 147 QVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQEQPIRIDLFDDEID 206 Query: 191 SLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEV---KRDPEHIYQQ 247 +L+ FD ++QRT E ++ +LPA EFP K +FR ++ + F K++P IYQ Sbjct: 207 TLKFFDPETQRTTENLKQFRILPAKEFPL-KEGRSIFRERYAEAFPTANPKKNP--IYQD 263 Query: 248 VSKGTLPAGIEYWQPLFFS----EPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARF 303 V G G+E++ PLFF E +Y P N +++ L+ S D + R+ Sbjct: 264 VLDGIASPGVEFYLPLFFEKGQMESQSYFTAYLPRNCIVITNDALDESLTSCWKDVVQRY 323 Query: 304 ENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAV 363 E+R + +P+L P+ L+L + + +LK +PR+ + +E + + NL + LAV Sbjct: 324 ESRRHNIDQPILSPEHLFLMPNMVLEQLKQFPRIHVSSEIIAERVGGINLPVSQPVKLAV 383 Query: 364 QAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR 423 +++ P + + K++ + PV+ ES GRRE+L + L + D + Sbjct: 384 DPKKEHPFEVVTKYINEVNHPVLLVAESAGRRESLKDALRPSLGDIPNVEGFDAFVKQQY 443 Query: 424 YLMIGAA--EHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQ 481 + I A + G V + LA+I E+ L RV +RR+ ++ ++ + LIR+L EL IG Sbjct: 444 AIAITNAPLDRGLVLS-SQLAVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLTELSIGA 502 Query: 482 PVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541 PVVH+++GVGRYAG+ TLE E+L L YA+ AK+YVPV++LHLISRY+GG + AP Sbjct: 503 PVVHIDYGVGRYAGLITLEIDDQDHEFLQLDYADAAKVYVPVTNLHLISRYSGGDPDLAP 562 Query: 542 LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFET 601 LHKLG DAWS+A++KA E++ DVAAELL I A+R +K GFAF+ D+ Y F F +E Sbjct: 563 LHKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDQSPYMQFSSGFAYEE 622 Query: 602 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLL 661 T DQA AI A L DM MDRLVCGDVGFGKTEVAMRAAFLAV N+KQVAVLVPTTLL Sbjct: 623 TLDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLL 682 Query: 662 AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 721 AQQHY++F+DRFA+WP+RIE++SRF S K + + ++ GK+DI++GTHKLLQ V+F Sbjct: 683 AQQHYESFKDRFADWPIRIEVLSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQETVQFH 742 Query: 722 DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781 DLGL+IVDEEHRFGVR KERIKAMRA+VD+LTLTATPIPRTLNMA SGMRDLSIIATPPA Sbjct: 743 DLGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPA 802 Query: 782 RRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 841 RRLAVKTFV+E+ VREAILRE+LRGGQVY+L+N+V++I++ AE + LVPEAR+A+ Sbjct: 803 RRLAVKTFVQEHTDDSVREAILRELLRGGQVYFLHNEVDSIERTAENIRNLVPEARVAVA 862 Query: 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901 HGQMRERELE+VM F+H+ +NVLVC+TIIETGID+P ANTII+ERAD GLAQLHQLRG Sbjct: 863 HGQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIMERADKLGLAQLHQLRG 922 Query: 902 RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961 RVGRSHHQAYA+LL P K + DA+KRL+AI LGAGF LAT DLEIRGAGELLGE Sbjct: 923 RVGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELLGE 982 Query: 962 EQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVN 1021 +QSGSM+ IG+SLYME+LE A A++ G+ P+ + S E+ L MP+L+PD+++ DV+ Sbjct: 983 QQSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDEYLGDVH 1042 Query: 1022 TRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGN 1081 RL FYKRI++ T+ +L+ I++ELIDRFG LP + L + +LR QA++LGI K++ N Sbjct: 1043 QRLLFYKRISNTDTQEKLDNIRMELIDRFGTLPVSVKQLFHVHQLRLQAEELGITKIDLN 1102 Query: 1082 EKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRE 1141 +GG IEF++ V +I L+QKQP +YR++G RLK L E RI++ + + Sbjct: 1103 SQGGYIEFSQDTPVQAISIIQLMQKQPTYYRMEGGQRLKVTVQLQEYDKRIQFAHALLSK 1162 Query: 1142 L 1142 L Sbjct: 1163 L 1163 >UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xanthomonadaceae RepID=B2I662_XYLF2 Length = 1195 Score = 1095 bits (2831), Expect = 0.0, Method: Compositional matrix adjust. Identities = 587/1195 (49%), Positives = 786/1195 (65%), Gaps = 58/1195 (4%) Query: 2 PEQYRYTLPVKAGEQRLL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNA----LRL 55 P + L +AG+ R ++ A A +A A+ H GP++L+ D +A + L Sbjct: 3 PSSFPSPLLPRAGQLRAFWRAPVSPTALAWHIACAAQAHRGPLLLVTHDNHSAHQIEVDL 62 Query: 56 HDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 ++ + V+ DWETLPYD FSP +I+S RL+TL++LP++ RG+++VPV TLMQ Sbjct: 63 QTLLAHCSGLPVIGFPDWETLPYDQFSPDPNIVSQRLATLHRLPSLARGIVVVPVQTLMQ 122 Query: 116 RVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175 ++ P S++ G + K GQRL DA + +L+ AGYR+V QVM+ G++ RG LLD++PMG Sbjct: 123 QLAPLSYIVGGSFDFKVGQRLILDAEKQRLERAGYRNVPQVMDPGDFTVRGGLLDVYPMG 182 Query: 176 SELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF 235 +++P R++ D+EIDS+R FD +SQR+L +V+ I++LP E P D A +E + R+ F Sbjct: 183 TDVPLRIELLDEEIDSIRTFDPESQRSLNQVDVIHMLPGREVPLDPAVLERVLVRLRERF 242 Query: 236 EVKRDPEHIYQQVSKGTLPAGIEYWQPLFF------SEPLPPLFSYFPANTLLVNTGDLE 289 ++ +YQ + G P+GIEY+ PLFF LF Y A+ L++ + Sbjct: 243 DLDTRRSALYQDLKAGLAPSGIEYYLPLFFESGRGGKHATATLFDYLSADLLVLTAPGVS 302 Query: 290 TSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL-KTEHLPTKA 348 +A+ F T+ R+E R D RPLLPPQ L+ D L L PR+++ EH Sbjct: 303 NAADAFWGQTMQRYEQRRHDIERPLLPPQELYQSPDALRERLNRLPRIEVWSAEHAHIDK 362 Query: 349 ANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIA 408 A L Q LP V + + ALR FL + G V+ + S GRRE L ELLA + Sbjct: 363 AEV-LDEQPLP---VATKDVSVGQALRTFLADYAGRVLIAATSPGRREVLLELLATADLQ 418 Query: 409 PQRI-------MRLDEASDRGRY---------------------------------LMIG 428 P+ + + E SD G + + Sbjct: 419 PEVLPDFRSFFLSAAEVSDLGEANRDSGNGVSGSNDADAAAFHVIASQGGSLPTFAITVA 478 Query: 429 AAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEH 488 E GF +V +A++ E L ERV R+ R P+ +IR+L EL G P+VH +H Sbjct: 479 PLEDGFSLSVPPIAVLTERQLFPERVNPVRRSRRVGREPEAIIRDLGELSEGAPIVHEDH 538 Query: 489 GVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 548 GVGRY + T+ G+ GE++ + YA +LYVPV+ LHLISRY+G + E APLH LGG+ Sbjct: 539 GVGRYRKLITMNVSGMPGEFVEIEYAKGDRLYVPVAQLHLISRYSGASPETAPLHSLGGE 598 Query: 549 AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 608 WS+A++KAAEKVRDVAAELL+I A+R A+ G A + DR Y+ F FPFE TPDQ A Sbjct: 599 QWSKAKRKAAEKVRDVAAELLEIQARRQARAGLALRIDRTMYEPFAAGFPFEETPDQLAA 658 Query: 609 INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDN 668 I L D+ MDR+VCGDVGFGKTEVA+RAAF A KQVAVLVPTTLLA+QHY N Sbjct: 659 IETTLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHYRN 718 Query: 669 FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 728 FRDRFA++P+R+E++SRF+S KE L +V+EG +D+++GTH+LLQ DVKFKDLGL+IV Sbjct: 719 FRDRFADYPIRVEVLSRFKSTKEIKAELQKVSEGTMDVIVGTHRLLQPDVKFKDLGLVIV 778 Query: 729 DEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 788 DEE RFGVR KE +K++RANV +LTLTATPIPRTLNMAM+G+RDLSIIATPP RLAV+T Sbjct: 779 DEEQRFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAVQT 838 Query: 789 FVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 848 F+ +D+ ++ EA RE+ RGGQ+Y+L+NDVE+I + LA+LVPEARI I HGQM ER Sbjct: 839 FITPWDNALLHEAFQRELARGGQLYFLHNDVESIGRMQRDLAQLVPEARIGIAHGQMPER 898 Query: 849 ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908 ELERVM DF Q FNVL+ TTIIE+GIDIP ANTIII RAD FGLAQLHQLRGRVGRSHH Sbjct: 899 ELERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHH 958 Query: 909 QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSME 968 +AYA+L+ P ++MT DA+KRLEAIAS+++LGAGF LATHDLEIRGAGELLGE+QSG M Sbjct: 959 RAYAYLVVPDRRSMTADAEKRLEAIASMDELGAGFTLATHDLEIRGAGELLGEDQSGQMA 1018 Query: 969 TIGFSLYMELLENAVDALKAGREPSLEDLTSQQ-TEVELRMPSLLPDDFIPDVNTRLSFY 1027 +GFSLY ELLE AV ++K G+ P L+ ++ EV+L +P+L+P+D++PDV+TRL+ Y Sbjct: 1019 EVGFSLYTELLERAVRSIKQGKLPDLDAGQEERGAEVDLHIPTLIPEDYLPDVHTRLTLY 1078 Query: 1028 KRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVI 1087 KRI++A+ N L E+ VE+IDRFG+LP+ A+ L IA L+ QA LGI KLE E GG I Sbjct: 1079 KRISTARDSNALRELNVEMIDRFGVLPETAKHLFAIAELKLQATALGISKLELGENGGRI 1138 Query: 1088 EFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 F K ++P +I L+QKQ + Y ++GP++LK L E R R + L Sbjct: 1139 IFGAKPIIDPMAVIQLVQKQSKLYSMEGPSKLKLKLPLPEPADRFNAARGLLAAL 1193 >UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=Proteobacteria RepID=Q2SWT7_BURTA Length = 1217 Score = 1080 bits (2792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 574/1139 (50%), Positives = 756/1139 (66%), Gaps = 16/1139 (1%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNAL---RLHDEISQFT-DQM 66 VKAG++ G+A A ++A H V L+A NA+ RL E+ F D Sbjct: 75 VKAGQRFAFDGAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQELRYFAPDAR 134 Query: 67 VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGH 126 V L DWETLPYD+FSPHQD++S RL+TL+ L + +L+VP T + R+ P SFL + Sbjct: 135 VRVLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRMPPASFLAAY 194 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 +G+RL L+ QL AGY HV QV+ GEY RG+L+DLFPMGS LPYR+D FD Sbjct: 195 TFAFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPMGSPLPYRIDLFD 254 Query: 187 DEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQ 246 D++DS+R FD D+QR+L V + LLP EFP D+AA FRS+WR+TFE IY+ Sbjct: 255 DQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRWRETFEGDPSRAPIYK 314 Query: 247 QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENR 306 + G AGIEY+ PLFF E LF Y P N LV TGDL+ + +RF ADT R+ Sbjct: 315 DIGNGVPSAGIEYYLPLFFDE-TATLFHYLPENAQLVFTGDLDAAIKRFTADTKQRYAFL 373 Query: 307 GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQ 366 D RP+L PQ L+L D+ + K + R+ L + P+ A LP+LA+ Sbjct: 374 SHDRERPILEPQRLFLSDDDFYLLAKPFARIVLPAQ--PSGGWAA-----PLPNLALDRH 426 Query: 367 QKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLM 426 APL A +LET + V+F+VES GRRE + +L A + P + Sbjct: 427 ADAPLAAFAAYLETTNNRVLFTVESAGRRETIAQLFAEHHLRPAGSDSFAAWLETDERFA 486 Query: 427 IGAA--EHGFVDTVRNLALICESDLLGERVARRRQDSR-RTINPDTLIRNLAELHIGQPV 483 +G A GF A++ E++L G R + + + N D ++R+L+EL +G PV Sbjct: 487 LGVAPLASGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDLSELKVGDPV 546 Query: 484 VHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLH 543 VH +HG+GRY G+ +++ G E+L L YA D+KLYVPV+ LH+ISRY+G ++APLH Sbjct: 547 VHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAGDSKLYVPVAQLHVISRYSGADPDSAPLH 606 Query: 544 KLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTP 603 LG W RA+++AA+++RD AAELL++YA+RAA+EG AF D Y F DSF FE TP Sbjct: 607 ALGSGQWERAKRRAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYVKFADSFGFEETP 666 Query: 604 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQ 663 DQA AI AV+ DM MDRLVCGDVGFGKTEVA+RAAF+AV KQVA+L PTTLLA+ Sbjct: 667 DQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAE 726 Query: 664 QHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 723 QH F DRFA+WPV+I +SRF+S KE + ++ +G +DI+IGTHKLL SDV+FK L Sbjct: 727 QHTQTFIDRFADWPVKIVELSRFKSTKEVNAAIQQINDGSVDIVIGTHKLLSSDVQFKRL 786 Query: 724 GLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 783 GL+I+DEEHRFGVR KE +KA+RA VD+LTLTATPIPRTL MA+ G+RD S+IAT P +R Sbjct: 787 GLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKR 846 Query: 784 LAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHG 843 LA+KTFVR + V+REA+LRE+ RGGQVY+L+N+VE I+ L ELVPEARI I HG Sbjct: 847 LAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRRAMLEELVPEARIVIAHG 906 Query: 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903 QM ERELERVM DF QR NVL+CTTIIETGID+P+ANTII+ RAD FGLAQLHQLRGRV Sbjct: 907 QMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLAQLHQLRGRV 966 Query: 904 GRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQ 963 GRSHHQAYA+LL P+A+T AQ+RLEAI +E+LG+GF LA HDLEIRG GE+LG++Q Sbjct: 967 GRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQ 1026 Query: 964 SGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTR 1023 SG + IGF LY E+L +AV ALK G+EP L + TE+ L P++LP D+ DV R Sbjct: 1027 SGEIHEIGFQLYTEMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPADYCGDVQER 1086 Query: 1024 LSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 LS YKR+A+ + + ++ I+ ELIDRFG LP A L++ RLR A+ LGI K++ +E Sbjct: 1087 LSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLGIMKIDASEA 1146 Query: 1084 GGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 ++F ++P +I ++QK +H +L G +L+ + R+ V++ +R L Sbjct: 1147 AIGLQFVPNPPIDPMRIIDMVQKH-RHIKLAGQDKLRIETRTPDLAVRVSTVKETLRAL 1204 >UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Betaproteobacteria RepID=C6P0P2_9PROT Length = 1227 Score = 1071 bits (2769), Expect = 0.0, Method: Compositional matrix adjust. Identities = 566/1181 (47%), Positives = 764/1181 (64%), Gaps = 64/1181 (5%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDS 80 L G++ A +A+ A +H+ P+V+IA + A RL +EI F ++ V L DWETLPYD Sbjct: 52 LQGSSDALALAQYAVQHS-PLVIIAANALEAQRLVEEIPFFDPKLRVHLLPDWETLPYDH 110 Query: 81 FSPHQDIISSRLSTLYQL---------------PTMQRG-------------VLIVPVNT 112 FSPHQD+IS RL+TL+ + P RG V++VP+ T Sbjct: 111 FSPHQDLISERLATLHHIRSIGQQTARPSPQSSPASGRGSERENQSSTSACDVIVVPITT 170 Query: 113 LMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLF 172 + + P S+L + +KKG+RL DA R Q+ AGY HV QV+ GEY RG ++DLF Sbjct: 171 ALYPLPPVSYLAAYTFFLKKGERLDLDAFRQQMTLAGYNHVQQVLTPGEYCVRGGIIDLF 230 Query: 173 PMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWR 232 MGS LPYR+D FDDEI+++ FDVD+QRTL V I LLPA EFP D+ FR +R Sbjct: 231 AMGSVLPYRIDLFDDEIETIATFDVDTQRTLYPVPEIRLLPAREFPLDEKGQATFRQNFR 290 Query: 233 DTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSA 292 D FE IY+ VSKG PAGIEY+ PLFF + LF Y P L +++ + Sbjct: 291 DRFEGDPSKSRIYKDVSKGIAPAGIEYYLPLFFDQ-TATLFDYLPKIATLCLHHNVDEAI 349 Query: 293 ERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAA--- 349 F D +R+ DP PLL + L+L ++ F K + R+ + P+ A Sbjct: 350 TSFGKDAASRYNLLRGDPQHPLLETKELFLDGEQFFIRAKEFARIDVIAASAPSPLAPLP 409 Query: 350 -----------NANLGFQK------------LPDLAVQAQQKAPLDALRKFLETFDGPVV 386 +G ++ +P +AV + + P FL + G V+ Sbjct: 410 EGEGNLSSLSPGEGVGVREDSKNTTRCSTAAIPPIAVDRRAEVPTQKFADFLRAYAGRVL 469 Query: 387 FSVESEGRREALGELLARIKIAPQRIMRLDEAS---DRGRYLM-IGAAEHGFVDTVRNLA 442 ES GRRE + L + P + D AS + ++++ +G + GF LA Sbjct: 470 LLAESLGRREIMSGYLKEYGLTPA--VCEDYASFLAGQDKFMLGVGPVQIGFSLPDEQLA 527 Query: 443 LICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAG 502 ++ E++L + R + R N + ++R+L+EL G PVVH +HG+ RY G+ L+ G Sbjct: 528 IVTETELYAAQPRSRANRAARKSNVEGMLRDLSELKPGDPVVHEQHGIARYRGLVNLDLG 587 Query: 503 GITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVR 562 E+L+L YA + KLYVPVS LH+ISRY+GGA E APLHKLG AW +A+++A ++VR Sbjct: 588 EGENEFLLLEYAGEDKLYVPVSQLHVISRYSGGAAEAAPLHKLGSGAWDKAKRRAMQQVR 647 Query: 563 DVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAM 622 D AAELL+IYAQRA ++G AFK Y+ F F FE T DQA AI AVL D+ M Sbjct: 648 DTAAELLNIYAQRATRKGHAFKLTYHDYEAFAAGFGFEETADQAAAIEAVLLDLQSGKPM 707 Query: 623 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM 682 DRL+CGDVGFGKTEVA+RAAF+A KQVAVLVPTTLLA+QH+ NF RFA+WP+RI Sbjct: 708 DRLICGDVGFGKTEVALRAAFVAASEGKQVAVLVPTTLLAEQHFQNFSTRFADWPIRIAE 767 Query: 683 ISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERI 742 +SRFRSAKE TQ L ++A+GK+DI+IGTHKL+Q DVKF +LGL+I+DEEHRFGV+ KE++ Sbjct: 768 LSRFRSAKEVTQALKDLADGKLDIVIGTHKLIQKDVKFHNLGLVILDEEHRFGVQQKEKL 827 Query: 743 KAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAI 802 KA+RA VD+LTLTATPIPRTL M++ G+RD S+IAT P RRL++KTFV + V+REA+ Sbjct: 828 KALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPQRRLSIKTFVSGFSQGVIREAV 887 Query: 803 LREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRF 862 LRE+ RGGQVY+L+N+V+ I E+L L+PEARI + HGQM ER+LE VM DFHHQRF Sbjct: 888 LRELKRGGQVYFLHNEVDTIANMLEKLETLLPEARIRVAHGQMGERDLEAVMRDFHHQRF 947 Query: 863 NVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAM 922 NVL+C+TIIETGID+PTANTII+ RAD FGLAQLHQLRGRVGRSHHQAYA+LL + Sbjct: 948 NVLLCSTIIETGIDVPTANTIIMNRADRFGLAQLHQLRGRVGRSHHQAYAYLLVDSMDGL 1007 Query: 923 TTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENA 982 T A+KRLEAI ++E LG+GF LA HDLEIRGAGE+LGE QSG M+ IGFSLY ++L A Sbjct: 1008 TAQAKKRLEAIQAMEQLGSGFFLAMHDLEIRGAGEVLGESQSGEMQEIGFSLYNDMLAAA 1067 Query: 983 VDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEI 1042 + +LK G+EP + TE+ L P+LLP+D+ D++ RL YKR+A+ T+ +L+++ Sbjct: 1068 IASLKQGKEPDMTHPLGVTTEINLHTPALLPNDYCGDIHQRLIIYKRLANCDTQEDLDDM 1127 Query: 1043 KVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIG 1102 + ELIDRFGLLP+PA+TLLD RLR A+ LGI K++ + + VI+F ++P +I Sbjct: 1128 QQELIDRFGLLPEPAQTLLDSHRLRILAKPLGISKVDASSEAIVIQFVPNPPIDPMKVIT 1187 Query: 1103 LLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELE 1143 ++Q + +H ++ G +L+ + + R+ VR F EL+ Sbjct: 1188 MIQSK-RHIKMAGQDKLRIELKYGDLQQRVLAVRNFFGELK 1227 >UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Burkholderiales RepID=Q12A09_POLSJ Length = 1201 Score = 1058 bits (2735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 567/1188 (47%), Positives = 764/1188 (64%), Gaps = 57/1188 (4%) Query: 10 PVKAGEQRLLGELTGAACATLVAEIAERH--AGPVV-LIAPDMQNALRLHDEISQFTDQM 66 P+ +G++ L + G+A A L+A + +R AG + +I D A RL DE++ F + Sbjct: 5 PLVSGKRYTLPQPPGSADALLLARLGQREQAAGKLTAIITSDATTAQRLMDEMAFFAPDL 64 Query: 67 VMNL-ADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG----VLIVPVNTLMQRVCPHS 121 L DWETLPYD+FSPHQD+IS RL+TL+++ + V+IVP T + R+ P S Sbjct: 65 RYALFPDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVIVPATTALYRLAPPS 124 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 FL G+ K Q+L L+ QL AGY HV QV+ GEYA RG L+DLFPMGS +P+R Sbjct: 125 FLAGYTFEFKVKQKLDESRLKAQLTLAGYSHVTQVVGPGEYAVRGGLIDLFPMGSLVPFR 184 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP 241 +D FDDEIDS+R FD DSQR+L V + LLP EFP D A FR +WR+ + Sbjct: 185 VDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDDARAKFRKRWRELLDGDPTK 244 Query: 242 EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLA 301 IY+ + G +GIEY+ PLFF E +F Y ++ +V GDLE + +RF DT Sbjct: 245 SRIYKDMGNGVATSGIEYYLPLFFDE-TATVFDYLGSDATVVLHGDLEPAFQRFWQDTKD 303 Query: 302 RFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKT----------------EHLP 345 R+ P RP LPP+SL+L ++ ++ + ++ LK + LP Sbjct: 304 RYRLVRDAPDRPALPPESLFLGAEQFYARANGYAQLALKAGSPHPNPLPGGEGIKGDLLP 363 Query: 346 TKAANANLG-------------------FQKLPDLAVQAQQKAPLDALRKFLETFDGPVV 386 + + G F LP +AV + PL + + V+ Sbjct: 364 LQGGEESKGDLLPLPLGEGRGEGSPYTEFDSLPAMAVVRGAEDPLARFKGHVRNTAHRVL 423 Query: 387 FSVESEGRREALGELLARIKIAPQRIMRLD--EASDRGRYLMIGAAEHGFVDTVRNLALI 444 ES+GRRE+L + L ++P L + SD + A GF + I Sbjct: 424 VLAESDGRRESLLDFLRASNVSPPAFNSLQDFQTSDEKLGIATAALNTGFSWLEEGIDFI 483 Query: 445 CESDLLGERVARRRQDSRRTINPDT--LIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAG 502 E++L V RR++ ++ D LI++L+EL++G PVVH HG+GRY G+ L+ G Sbjct: 484 TETELFAAGVTTRRRNKKQEQVSDVEALIKDLSELNVGDPVVHSAHGIGRYRGLLNLDLG 543 Query: 503 GITG--------EYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRAR 554 E+L L YA+ A LYVPVS LHLISRY G + E APLH+LG W +A+ Sbjct: 544 QDKNPDGSPSLQEFLHLEYADKATLYVPVSQLHLISRYTGVSAEEAPLHRLGSGQWEKAK 603 Query: 555 QKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLS 614 +KAAE++RD AAELL+IYA+RAA+EG AF++ Y+ F + F FE T DQ AI+AV+ Sbjct: 604 RKAAEQIRDSAAELLNIYARRAAREGHAFRYSPGDYEAFANDFGFEETADQRAAIHAVIQ 663 Query: 615 DMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA 674 DM P MDRLVCGDVGFGKTEVA+RAAF+A+ KQVA+L PTTLLA+QHY DRFA Sbjct: 664 DMISPRPMDRLVCGDVGFGKTEVALRAAFIAITGGKQVALLAPTTLLAEQHYQTLVDRFA 723 Query: 675 NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRF 734 WPV++ +SRFRSA+E T + +A+G +DI++GTHKLL DVKF+ LGLLI+DEEHRF Sbjct: 724 KWPVKVAEMSRFRSAREITAAIKGLADGSVDIVVGTHKLLSQDVKFQRLGLLIIDEEHRF 783 Query: 735 GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYD 794 GVRHKE +KAMRA VD+LTLTATPIPRTL MA+ G+RDLS+IAT P RRLA+KTFVR + Sbjct: 784 GVRHKETMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRSEN 843 Query: 795 SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 854 + V+REA+LRE+ RGGQVY+L+N+VE IQ E+L E++PEARIA+ HGQM ERELERVM Sbjct: 844 NGVIREAVLRELKRGGQVYFLHNEVETIQNRREKLEEILPEARIAVAHGQMPERELERVM 903 Query: 855 NDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL 914 DF QR+N+L+C+TIIETGID+P+ANTI++ RAD FGLAQLHQLRGRVGRSHHQAYA+L Sbjct: 904 KDFVAQRYNLLLCSTIIETGIDVPSANTIVMSRADKFGLAQLHQLRGRVGRSHHQAYAYL 963 Query: 915 LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSL 974 + P + +T A +RLEAI +E+LG+GF LA HDLEIRG GE+LGE QSG+M +GF L Sbjct: 964 MVPDIEGLTKQASQRLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGESQSGNMLEVGFQL 1023 Query: 975 YMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK 1034 Y E+L AV +LKAGREP L S TE+ L P+LLP+D+ DV+ RLSFYK++A+AK Sbjct: 1024 YNEMLSEAVASLKAGREPDLLSPLSVTTEINLHAPALLPNDYCGDVHLRLSFYKKLATAK 1083 Query: 1035 TENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH 1094 ++++ + E++DRFG LP A+TL+D+ RLR A+ G+ K++ I F + Sbjct: 1084 NTDQIDALLEEIVDRFGKLPPQAQTLIDVHRLRVIARPYGVVKVDAAPGLINITFKKDPP 1143 Query: 1095 VNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 ++ ++ L+QK +H +L G +L+ + L K R + VR +R L Sbjct: 1144 IDSMAIMQLIQKN-RHIKLAGNDKLRIERALENPKDRAQMVRDVLRSL 1190 >UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Betaproteobacteria RepID=B1XUT3_POLNS Length = 1181 Score = 1042 bits (2694), Expect = 0.0, Method: Compositional matrix adjust. Identities = 555/1167 (47%), Positives = 752/1167 (64%), Gaps = 39/1167 (3%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGP---VVLIAPDMQNALRLHDEISQFTDQMVM 68 +AG + L G++ A L+A+ A R+ +V+ Q A RL +EI F Q+ Sbjct: 15 RAGRRFTFSGLIGSSDAALIAQTALRYRDKFSVMVIFCAQAQEAQRLLEEIPAFAPQLKT 74 Query: 69 NL-ADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHA 127 L DWE LPYD FSPHQD++S RL+TLY+L +++VPV T +QR+ P +FL H Sbjct: 75 RLLPDWEILPYDHFSPHQDLVSERLATLYELLNGSCNIVLVPVTTALQRLGPPNFLASHT 134 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 ++G +L+ AL+ QL AGY V VM GEY+ RG L DLFPMGS LPYRLD F D Sbjct: 135 FFFRQGDKLNEAALKLQLQQAGYDPVSAVMRPGEYSIRGGLFDLFPMGSNLPYRLDLFGD 194 Query: 188 EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 247 EI+ +R F+ D+QR+L V+ + LLP HEFP D + FR +WR+ FE IY+ Sbjct: 195 EIEQIRAFNPDTQRSLYPVKEVRLLPGHEFPFDDTSRTSFRGRWREVFEGDPSRCSIYKD 254 Query: 248 VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN---TLLVNTGDLETSAERFQADTLARFE 304 S G AGIE + PLFF E LF Y P + LV+ GD+E + + F DTL+R+E Sbjct: 255 ASLGIPSAGIESYLPLFFEEN-SSLFDYLPRSGDPVWLVSIGDVEETIKGFWKDTLSRYE 313 Query: 305 NRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQ 364 D RP+LPP+ L+L VDE FS K + R+ L+ E A N F +PD++V Sbjct: 314 FLKHDLDRPILPPKELFLDVDEFFSTSKPYARLSLENE-----AVEKN-EFFAVPDISVH 367 Query: 365 AQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELL------------ARIKIAPQRI 412 + P+ LR + + + V+ +S GR+E++ +L + + P+ Sbjct: 368 RRDADPISRLRNVVASENVRVLICSDSAGRKESIRQLFDESNSVASVDGKSLYSLKPEGF 427 Query: 413 MRLDE--ASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQ-DSRRTINPDT 469 + E S+ L+ +GF NL +I E++L +RR+ + + D Sbjct: 428 DSIAEFIKSESLFGLVTAPLFNGFSWPSENLIVITEAELFTTTTRQRRKGKANENADSDM 487 Query: 470 LIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGE-----YLMLTYANDAKLYVPVS 524 L ++L+EL IG PVVH EHG+GRY G+ L E +L L YA A LYVPV Sbjct: 488 LFKDLSELKIGDPVVHAEHGIGRYQGLVLLNLAPPKEEPSFEEFLHLQYAGQATLYVPVQ 547 Query: 525 SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 L +++RYAG ++APLH+LG W +A++KAA+++RD AAELL +YA RA ++G AF+ Sbjct: 548 QLQMVTRYAGSDPDSAPLHQLGSGQWGKAKRKAAQQIRDTAAELLGLYAARAIRKGHAFE 607 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 Y F +SF FE TPDQA AI AV+ DM MDRLVCGDVGFGKTEVA+RA+F+ Sbjct: 608 FSAHDYAAFAESFGFEETPDQANAIAAVIGDMTSGTPMDRLVCGDVGFGKTEVALRASFV 667 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 AV KQVA+L PTTLLA+QH ++DRFA+WPVRI +SRF++ KE LA +A+G+ Sbjct: 668 AVMGGKQVAILAPTTLLAEQHVATWKDRFADWPVRIVELSRFKTTKEINVALAAIAKGEA 727 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 DI+IGTHKLL + +F +LGL+I DEEHRFGVR K+ +KA+RA VDILTLTATPIPRTL Sbjct: 728 DIIIGTHKLLSKETQFANLGLVIADEEHRFGVRQKDALKALRAEVDILTLTATPIPRTLG 787 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 MAM G+R+ SIIAT P +RLA+KTFVR V+REA+LREI RGGQVY+L+N+VE IQ Sbjct: 788 MAMEGLREFSIIATAPQKRLAIKTFVRREGDDVIREAVLREIKRGGQVYFLHNEVETIQN 847 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 L EL+PEARI++ HGQM ERELE VM +F QR N+L+CTTIIETGID+PTANTII Sbjct: 848 RKHALQELIPEARISVAHGQMHERELESVMREFVTQRTNILLCTTIIETGIDVPTANTII 907 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 + RAD FGLAQLHQLRGRVGRSHH+AYA+LL P+ +A++ AQ RL AI ++E+LG+GF Sbjct: 908 MHRADKFGLAQLHQLRGRVGRSHHRAYAYLLVPNSEALSKQAQLRLNAIQAMEELGSGFY 967 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 LA HDLEIRGAGE+LG++QSG + IGF LY E+L AV +L++G+E L T+V Sbjct: 968 LAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTEMLNRAVKSLRSGKESDLLSPLQATTDV 1027 Query: 1005 ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA 1064 L +P+LLP+D+ PDV+ RLS YKR A +EL ++ EL+DRFG LPD AR+ + Sbjct: 1028 NLGVPALLPEDYCPDVHERLSLYKRFAGTHDFSELMGLREELVDRFGDLPDQARSFYETH 1087 Query: 1065 RLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFI-- 1122 RLR + GI+K++ I+F ++P +I L+Q +H +L+G +LK + Sbjct: 1088 RLRLEMAGFGIKKIDATPVSIQIQFIPNPPIDPMKIIQLIQSS-KHIQLNGQDKLKVLPQ 1146 Query: 1123 --QDLSERKTRIEWVRQFMRELEENAI 1147 ++ + R++ +RQ +R L E+A+ Sbjct: 1147 KDREFERLEQRLDAIRQVLRRLNESAV 1173 >UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Proteobacteria RepID=A5WFY6_PSYWF Length = 1271 Score = 1007 bits (2604), Expect = 0.0, Method: Compositional matrix adjust. Identities = 554/1226 (45%), Positives = 760/1226 (61%), Gaps = 95/1226 (7%) Query: 9 LPVKAGEQRLLGELTGAACATLVAEIAERHAGPV-----VLIAPDMQNALRLHDEISQFT 63 P+ ++R L AA + +A +++ V V++ D ++ E++ F Sbjct: 51 FPIDKAQKRWLYPAYAAAGSLWLASLSDCPVANVANRLKVVVTKDQNQLNQIETELA-FC 109 Query: 64 DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFL 123 DWETL YD SPHQDI+S R++ L +P ++G+L++ + TLMQR+ P S+L Sbjct: 110 GVDAYVFPDWETLTYDELSPHQDIVSERINLLTDMP--KQGILLISIQTLMQRMAPPSWL 167 Query: 124 HGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLD 183 G + G + R L +AGYR VD V E GE+A RG+++D+F MG P RLD Sbjct: 168 IGQHFDLSVGDIFDINQQREMLAAAGYRAVDNVFEPGEFAVRGSVIDIFAMGQPFPLRLD 227 Query: 184 FFDDEIDSLRVFDVDSQRTLEE----------------------VEAINLL--------- 212 FD+EI+++R F+ +QRTL VE+++LL Sbjct: 228 LFDNEIETIRFFNPQTQRTLSTQTLMDLVAGRADANSANQHDLTVESLSLLHKLPDVSKP 287 Query: 213 -------PAHEFPTDKAAIELFRSQWRDTF-EVKRDPEHIYQQVSKGTLPAGIEYWQPLF 264 PA EFP D+ E FR+ + F V +++ V G +G+EY+QPLF Sbjct: 288 ITQFQILPAKEFPLDEGK-ETFRNNFAAMFPNVSSRRFELHKDVMAGIASSGLEYYQPLF 346 Query: 265 FS----EPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSL 320 F LFSYFP +TL + + + + + R+E R D +P++ P L Sbjct: 347 FEIEDWSQNGHLFSYFPKDTLFIIDENTAEAQADYWSQIQRRYEERRHDIDKPIVEPTLL 406 Query: 321 WLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLP-----DLAVQAQQKAPLDALR 375 +L + L L +PRV L L A N G KLP +L V Q+ PL L Sbjct: 407 YLPSNSLNEMLNAYPRVILSQSDL-AAADNTQSGKVKLPALMPPELPVSHQKAEPLLELL 465 Query: 376 KFLET----------FDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY- 424 + P++ E+ GRRE L EL R K+ Q L + Y Sbjct: 466 NYASAGWDDNTTEAALARPILVVAETAGRREILLELF-RGKLNVQTFDSLQQFLGSELYQ 524 Query: 425 ------------------LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTIN 466 L I E G V ++L++I E+ L G +V + R+ + ++ Sbjct: 525 QSLIKNTASASNTKPTVGLTIAPIERGAV-IDQHLSIISETQLFGRQVLQTRRRRQSDVS 583 Query: 467 PDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSL 526 + L++++ EL G PVVH++ G+GRY G+ TL+ G E++ L YA+DA +YVPV++L Sbjct: 584 EEFLVKSVTELTEGSPVVHIDQGIGRYHGLITLDIGEGEQEFIHLKYADDASIYVPVANL 643 Query: 527 HLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 LISRY+GG APLHK+G W +A+QKA E++ DVAAELL++ A+R AKEG FK + Sbjct: 644 QLISRYSGGDPALAPLHKIGSGKWDKAKQKALEQIHDVAAELLNMQARRQAKEGIHFKVE 703 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 QY+LF F FE TPDQA AI+AV+ DM Q MDRL+CGDVGFGKTEVAMRAAF+AV Sbjct: 704 TAQYELFASQFAFEETPDQANAIDAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAV 763 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 ++ QVAVLVPTTLLA QH DNF+DRFA+WP+R+E +SRF K Q Q+L ++A GK+DI Sbjct: 764 NSGYQVAVLVPTTLLAGQHEDNFKDRFADWPIRVETLSRFGGKKYQDQVLEDLAAGKVDI 823 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 +IGTHKLLQ DVKF +LGL+IVDEEHRFGVRHKERIKA++++VD L++TATPIPRTLNMA Sbjct: 824 VIGTHKLLQKDVKFANLGLMIVDEEHRFGVRHKERIKAIQSDVDSLSMTATPIPRTLNMA 883 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 ++GMRD+SIIATPPARRL++KTFV + + +++EAILRE+LRGGQVY L+NDV +I++ A Sbjct: 884 LTGMRDMSIIATPPARRLSIKTFVMQKTNQLMKEAILRELLRGGQVYLLHNDVASIERMA 943 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 E + ELVPEAR+ + HGQM ER LE+VM F+H++FNVLVCTTIIETGID+P ANTIIIE Sbjct: 944 ENIRELVPEARVGVAHGQMNERGLEQVMQQFYHKKFNVLVCTTIIETGIDVPNANTIIIE 1003 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 RAD FGLAQLHQLRGRVGRSHHQAY +LL P K + DA+KRL AI LGAGF LA Sbjct: 1004 RADKFGLAQLHQLRGRVGRSHHQAYCYLLVPSVKGLKGDAKKRLTAIERANTLGAGFMLA 1063 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVEL 1006 + DLEIRGAGE+LG++QSG+M+ IGFSLYM++LE A A+KAG+EP L S +++ L Sbjct: 1064 SEDLEIRGAGEILGKQQSGNMQAIGFSLYMDMLERATKAIKAGKEPDLNTPLSLTSDINL 1123 Query: 1007 RMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARL 1066 +L+P+D++ DV RL FYKRI++A+ + L +I+ E+IDRFG LPD + L I +L Sbjct: 1124 HSSALIPEDYVNDVPQRLLFYKRISNAEDKEVLTDIRTEMIDRFGALPDQTKQLFAIHQL 1183 Query: 1067 RQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQ--D 1124 R A+ L I K++ ++EFA V +I L+Q YR++G + +++ Sbjct: 1184 RVLAEPLAIYKIDATSNSVILEFAPDTPVEALAIIQLIQSDGNRYRMNGASGIRYTNPDK 1243 Query: 1125 LSERKTRIEWVRQ----FMRELEENA 1146 L R+E VR+ F R +++ A Sbjct: 1244 LDTPAKRVEVVRELLNHFTRHVKDKA 1269 >UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Acidithiobacillus RepID=B7J4B9_ACIF2 Length = 1149 Score = 998 bits (2579), Expect = 0.0, Method: Compositional matrix adjust. Identities = 557/1149 (48%), Positives = 755/1149 (65%), Gaps = 29/1149 (2%) Query: 10 PVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN 69 P +AG R ++ GAA + L A++ + P++++ P+ ++ E F + Sbjct: 10 PPRAGAARAFSQIYGAADSWLAAQMTRQWQRPLLILLPNARDVEEWQREWRFFAPDLPAP 69 Query: 70 LA--DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHA 127 L D E LPYD +P D ++RL+TL LP RGV + P++ ++QR+ P SFL HA Sbjct: 70 LVFPDREILPYDRLAPPADATATRLATLATLPEW-RGVCLAPLSAVLQRLPPRSFLDQHA 128 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 V+ G LS + R +L AGYR+V +V E GE A RG ++DLFP GS LPYR++ FD Sbjct: 129 FVLAVGDHLSPEGFRQRLIDAGYRNVSEVSEAGELAWRGGIIDLFPSGSPLPYRIELFDR 188 Query: 188 EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 247 ++S+R FD ++QRTL++VE ++LLPA E P D AA++ FRS++R F IY+ Sbjct: 189 VVESIRAFDPETQRTLQKVEGVSLLPAREVPVDTAALQEFRSRFRARFSGDPQRAEIYRA 248 Query: 248 VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRG 307 S+G P G E++ PLFF E L +FP + ++ LE SA + D R+E R Sbjct: 249 ASRGQAPQGAEHYLPLFFPE-CSHLLMHFPVDGVVFLPPGLEASARHIRQDWQERYEERS 307 Query: 308 VDPMRPLLPPQSLWLRVDELFSELKNWPRV----QLKTEHLPTKAANANLGFQKLPDLAV 363 D + P+LPP L L E L+ RV + E LPT LPDL Sbjct: 308 HDTVHPILPPDELLLPPSEWEDVLRGRARVYGQQEGDAERLPTA---------PLPDL-- 356 Query: 364 QAQQKAPLDALRKFLETF--DGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE--AS 419 +APL +L FL G V+ + ES GR+EAL E L + + P R+ E A Sbjct: 357 HGSPEAPLASLDTFLRHLPTTGRVILAAESPGRQEALSERLGKSGLLPSRVHDWPEFLAG 416 Query: 420 DRGRYLMIGAAEHGFV---DTVRNLALICESDLLGERV-ARRRQDSRRTINPDTLIRNLA 475 + + E G + + + LAL+ E+ + G+RV A+RR + R + + L+R+L Sbjct: 417 TERIAITVAPLERGLLIKENGLVRLALVSEAQIFGDRVFAQRRSANARQRSIEGLVRDLG 476 Query: 476 ELHIGQPVVHLEHGVGRYAGMTT-LEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG 534 EL G V H E+G+GR+ GM T + G EY++L YAN +YVP L I+RY G Sbjct: 477 ELQPGDAVTHEEYGIGRFQGMATPFASQGDINEYVVLEYANGDLVYVPADHLDRIARYVG 536 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 L +LG + W + + KA +K D A+ELLDIYA+RAA+ G AF + Y F Sbjct: 537 NGATEPVLSRLGSNHWEKVKAKARQKAVDAASELLDIYARRAARTGRAFPEPDDAYWEFV 596 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 FPFE TPDQ QAI+AV++DM P MDRLVCGDVGFGKTEVA+RAAFLA + QVAV Sbjct: 597 SRFPFEETPDQQQAIDAVIADMTSPHPMDRLVCGDVGFGKTEVALRAAFLAAHSGAQVAV 656 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 LVPTTLLAQQHY+NFR+R A P+R+E++SRF++AK Q+L V+ G++DILIGTH+LL Sbjct: 657 LVPTTLLAQQHYENFRNRCAGLPLRVEVLSRFQNAKTHKQVLTAVSVGEVDILIGTHRLL 716 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 Q DV F DLGLLI+DEEHRFGVR KERIKA+RA VDILTLTATPIPRTLN++++G+RDLS Sbjct: 717 QKDVAFHDLGLLILDEEHRFGVRQKERIKALRAEVDILTLTATPIPRTLNLSLAGLRDLS 776 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 IIATPP RR V+TFV+ +D V EA RE+ RGGQVY+L+N+V +I++ A L L+P Sbjct: 777 IIATPPQRRQPVRTFVQIWDDATVIEACQRELHRGGQVYFLHNEVRDIERMAATLRRLLP 836 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 EAR+ + HGQM E ELE VM DF+HQRF++L+CTTIIE+GID P ANTI+I RAD FGLA Sbjct: 837 EARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTTIIESGIDNPHANTILINRADKFGLA 896 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QLHQLRGRVGRSH +AYA+L TP +AM+ DA++RL+AI SLEDLG GFALA+HDLEIRG Sbjct: 897 QLHQLRGRVGRSHQRAYAYLFTPDLRAMSDDARRRLDAIQSLEDLGVGFALASHDLEIRG 956 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP-SLEDLTSQQTEVELRMPSLLP 1013 AGELLGEEQSG M+ +GF+L+ME L++AV+A++AGR+P SLE+ + E+ L P+L+P Sbjct: 957 AGELLGEEQSGHMDEVGFTLFMEWLDDAVEAIRAGRDPRSLEEQRTSGPEIHLNTPALIP 1016 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKL 1073 DD++PDV+ RL YKR++ +++ + EI VE+IDRFG +P PARTLL RLR A + Sbjct: 1017 DDYLPDVHLRLQLYKRLSDVRSDTAIGEIMVEMIDRFGPIPAPARTLLCQTRLRLVAIQT 1076 Query: 1074 GIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIE 1133 GI +++ G ++FA +N V P +I L+Q+ Y+LDG RL+ +DL + + R + Sbjct: 1077 GIEQIDAGPAGARLQFAAENQVAPDKIIRLIQQPHSIYQLDGEHRLRIRRDLPDGEARCQ 1136 Query: 1134 WVRQFMREL 1142 + Q + +L Sbjct: 1137 ELLQLIDQL 1145 >UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bacteria RepID=A5CVJ9_VESOH Length = 1145 Score = 973 bits (2515), Expect = 0.0, Method: Compositional matrix adjust. Identities = 490/1153 (42%), Positives = 742/1153 (64%), Gaps = 19/1153 (1%) Query: 1 MPEQYRYTLPVKA---GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHD 57 MP Y Y+ VK G + G L G+A A + E A + +++IA D+ + + Sbjct: 2 MP--YLYSNKVKCFELGRKMYWGSLYGSADALALIEFANQQH-IILVIANDIVHFDNFYK 58 Query: 58 EISQF-TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQR 116 + + TD ++ +WE L YD FSPH DI SSRL TL +L +++RG++I + +L Sbjct: 59 SLKFYNTDLEILKFDNWEVLAYDYFSPHPDITSSRLKTLSKLKSLKRGIVITTLESLFSH 118 Query: 117 VCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176 +CP F ++L ++ +++ D +L GY+HV VMEHGE+ R +L+DL+PMG+ Sbjct: 119 LCPLEFSKKYSLNIRINDKINPDTFSEKLLKIGYKHVITVMEHGEFNMRNSLIDLYPMGT 178 Query: 177 ELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE 236 + YR++ F+ +++S+R F+ +QR+ ++ I LLPA EF TD +IE F++ ++ F Sbjct: 179 KTAYRINLFNQKVESIRAFNTSTQRSKTKIPEITLLPAREFATDNTSIEYFKTNYKKIFN 238 Query: 237 VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQ 296 D IY +VS+G LP GIE++ PLFF LF Y NT++ + + ++ Sbjct: 239 ---DNGFIYTEVSEGRLPGGIEFYLPLFF-HTTNTLFDYLADNTIIATSKEFSNLVDKTY 294 Query: 297 ADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQ 356 + RFEN R L Q ++L + LFSE+K ++ + T L K + N Sbjct: 295 NEIRERFENAKKSLDRAPLDIQRVFLSKELLFSEVKKKSQIIISTSKLENKKQHFNFNSS 354 Query: 357 KLPDLAVQAQQKAPLDALRKFLETF----DGPVVFSVESEGRREALGELLARIKIAPQRI 412 P + ++ Q PL F++ F + ++ ES R+ L +LL + + Sbjct: 355 LPPPVRIELQTNNPLSKFSTFVKRFTNKQNKKILIVCESLDRQNVLSDLLINHNLNTYSV 414 Query: 413 MRLDEASDRGRYLMIGAAE--HGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTL 470 E + + L I + HG + + N+A+I E DL G+ V ++++ + D Sbjct: 415 KSWHEFTTSSKSLNIIHEDLIHGLL--IHNIAIITEEDLFGQEVVQQQRRHTKHKYFDVA 472 Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 I++L E+ IG +VH +GVGRY G+ T + ++L+L YAN+AKL VP+ S +LIS Sbjct: 473 IKSLVEIKIGDAIVHENYGVGRYLGLKTKIFDKQSQDFLVLKYANNAKLMVPIISFNLIS 532 Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 RYAG + ++ PLHKLG + W++A++KA E + D+A ELL I A+R+++ GF+F + Y Sbjct: 533 RYAGISLKSTPLHKLGTNQWAKAKKKAGEALFDIAVELLKISAKRSSQTGFSFPKPNDDY 592 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 F +FPFE TPDQ + +N VL+DM MDRLVCGDVGFGKTE+AMRAAFLAV K Sbjct: 593 SSFVANFPFEETPDQIKTMNEVLADMQSQQPMDRLVCGDVGFGKTEIAMRAAFLAVKAGK 652 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 QVA+LVPTTLL+ QHY +F DRF N P +I +SRF++ KEQ I+ ++ +G IDI+IGT Sbjct: 653 QVAILVPTTLLSNQHYRSFIDRFTNDPTKIATLSRFQTPKEQKIIIEQLKQGTIDIIIGT 712 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 HK++Q+++K+K+L L+I+DEEHRFGV+ KE +K +R DILT+TATPIPRTLNMA+ + Sbjct: 713 HKIIQNNIKYKNLSLIIIDEEHRFGVKQKEALKKLRGQSDILTMTATPIPRTLNMALGSL 772 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 R+LSIIATPPA+R ++TFV+E+ + ++EAI REI RGGQV+ L+ND+ +I AE L Sbjct: 773 RELSIIATPPAKRSTIQTFVQEWHNDNIKEAITREIHRGGQVFILHNDINSIDNMAENLK 832 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 +++P+ +I I HG++ RELE++M+DF+H RF++LVCTTIIETGIDIP ANTIII A + Sbjct: 833 QIIPKLQIRIAHGKIPTRELEQIMSDFYHARFHILVCTTIIETGIDIPNANTIIINNAQN 892 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 FGLAQLHQLRGRVGRSHH+AYA+L+ +++ A+ RL+ I SL +LG+GF LA HDL Sbjct: 893 FGLAQLHQLRGRVGRSHHRAYAYLIVKSHLSLSKTAKDRLDVIKSLTELGSGFMLANHDL 952 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS 1010 EIRGAG+LLG+ QSG + IGF+LY +LL+ +DA+ +G++ +L D + + +++ +PS Sbjct: 953 EIRGAGDLLGDNQSGQISEIGFNLYHDLLKRTIDAVYSGKKINLNDPINHEVQIDSGLPS 1012 Query: 1011 LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQA 1070 ++P+ +I DV+ RL YKRIA+ + NEL+ +++E+IDRFGLLPD + LL +L+ + Sbjct: 1013 IIPETYIFDVHERLVLYKRIANCQNNNELKALQIEMIDRFGLLPDSTKNLLYNTKLKLFS 1072 Query: 1071 QKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKT 1130 Q +G+ K+ E +I F +KN ++P + L+QKQ + Y+L +L + + + Sbjct: 1073 QIIGVNKIILYEDKAIITFNKKNTIDPIKITNLIQKQAKKYQLKDQNQLIIKEQMPKNIR 1132 Query: 1131 RIEWVRQFMRELE 1143 RI+ + ++ L Sbjct: 1133 RIKLIEYLLKMLN 1145 >UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=beta proteobacterium KB13 RepID=B6BUC0_9PROT Length = 1120 Score = 972 bits (2513), Expect = 0.0, Method: Compositional matrix adjust. Identities = 485/1125 (43%), Positives = 717/1125 (63%), Gaps = 34/1125 (3%) Query: 27 CATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLA-DWETLPYDSFSPHQ 85 C+ L A+ P+V+ D A RL E+ F +V+++ DWETLPYDS SPH Sbjct: 23 CSELSAK-----NTPLVIFTKDSYVAARLQQEMLWFNQNLVVSMIPDWETLPYDSVSPHP 77 Query: 86 DIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 D+IS RL +L+ + +LI+P + + + P ++ ++ KGQ++ ++L+ L Sbjct: 78 DLISDRLKSLFLVTQKAFDILIIPATSALNHLPPKQYITQNSFFYSKGQKVDLESLKMVL 137 Query: 146 DSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEE 205 GY +V +V GE+A RG L+DLFPMGS +PYR+DFFD EI+S++ FDV++Q+++ Sbjct: 138 IENGYINVQKVFHPGEFAVRGGLIDLFPMGSTIPYRIDFFDTEIESIKTFDVETQKSIYP 197 Query: 206 VEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFF 265 I +LPA E P + +IE FR +R+ F IY +S AG+E++ PLF+ Sbjct: 198 TNKIEILPARECPLTELSIETFRKNYRERFSGDPSKSPIYTNISNKIPFAGMEWYLPLFY 257 Query: 266 SEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVD 325 E +F Y P +TL+ L +S + + D RF+ D RP+L P+ + + Sbjct: 258 QET-NTIFDYLPDDTLIDVPFKLSSSIDHYWLDAQTRFKMYAYDIERPILNPEEIMMDSV 316 Query: 326 ELFSELKNWPRVQLKT--EHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDG 383 + +L + + LP + G++ + D Q +K Sbjct: 317 KFHQDLNRFKNLNFDVIDNPLPKITIDYKDGYKNIADYINQCPKK--------------- 361 Query: 384 PVVFSVESEGRREALGELLARIKIAPQR---IMRLDEASDRGRYLMIGAAEHGFVDTVRN 440 ++ S ES GRRE + ++L ++ +R I LD D L+ + GF D Sbjct: 362 -IIISAESLGRRETIHKMLTECDLSLKRSESINILDPVIDH--LLIQSPLKEGFSDEY-- 416 Query: 441 LALICESDLLGERVARRRQDSR-RTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTL 499 + E DL + + + + + + N + +I++L+E+ +G PVVH HGVGRY G+ L Sbjct: 417 FEVFTEYDLFPDFIHQEKSKYKSKDYNAEVVIKDLSEISVGDPVVHENHGVGRYQGLVQL 476 Query: 500 EAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAE 559 + G E+L+LTY + KLYVPV+ L+ ISRY GG E+APLHKLG W + ++KA + Sbjct: 477 DMLGSINEFLLLTYEKEDKLYVPVTQLNSISRYTGGPIESAPLHKLGSGQWEKEKRKALK 536 Query: 560 KVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQP 619 +V D AAELL++YA R K+G K D +YQ F + FPFE TPDQ AI +V+ DM Sbjct: 537 QVYDTAAELLNLYALREKKKGLVSKIDFLEYQKFANEFPFEETPDQMLAIESVIKDMESA 596 Query: 620 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 MDRL+CGDVGFGKTEVAMRAAF+++ N++QV +LVPTTLLA QHY+NF DRF+++PV Sbjct: 597 RPMDRLICGDVGFGKTEVAMRAAFISIMNNRQVIILVPTTLLASQHYNNFVDRFSSFPVE 656 Query: 680 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK 739 IE ISRF+S K+Q ++L ++A GK+DI+IGTH+LLQ D+K ++GL+IVDEEHRFGVR K Sbjct: 657 IEEISRFKSNKQQNEVLEKLANGKVDIVIGTHRLLQKDIKIDNIGLIIVDEEHRFGVRQK 716 Query: 740 ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVR 799 E +K + N D L LTATPIPRTL+M++ G+RD SII+TPP +RL++KT V+ + +++ Sbjct: 717 EMLKKFKTNTDFLALTATPIPRTLSMSLEGLRDFSIISTPPQKRLSIKTMVKSFSEGIIK 776 Query: 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 EA+ RE RGGQ Y+L+NDV +I +E+L +++P+A++AI HGQM+E+ELERVM DFH Sbjct: 777 EALTREFNRGGQAYFLHNDVSSIYAISEKLTKIMPDAKVAIAHGQMKEKELERVMQDFHQ 836 Query: 860 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 QRFN+L+CTTIIETGIDIPT+NTIII AD FGL+QLHQLRGRVGRSHHQA+A+LL Sbjct: 837 QRFNLLLCTTIIETGIDIPTSNTIIINNADRFGLSQLHQLRGRVGRSHHQAFAYLLIDEN 896 Query: 920 KAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELL 979 +++T+ A+KRLEAI LEDLG+G+ LA HDLEIRGAGE+LG++QSG + IGFS+Y+++L Sbjct: 897 RSLTSKAKKRLEAIQYLEDLGSGYFLAMHDLEIRGAGEILGDQQSGEIHEIGFSMYLKML 956 Query: 980 ENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENEL 1039 AV LK + ++ ++ + P++L + + D N RL YKR++S ++ +L Sbjct: 957 NRAVTHLKNNETLDINADYNENNDINIHAPAILTNQYCGDPNERLVIYKRLSSCESLEDL 1016 Query: 1040 EEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAW 1099 + IK ELIDRFG+ P+ L I +R + L + K++ +K + F EKN+++P Sbjct: 1017 QMIKEELIDRFGVAPEQTENLFIIHHIRIITKDLDVTKIDAGKKTISLNFREKNNLDPLK 1076 Query: 1100 LIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 +I L+Q +H +LDGP ++ D + ++ ++ + E+++ Sbjct: 1077 IIDLVQTN-KHIKLDGPNKITLAGDFEDPFDKLNNIKSLVGEIKD 1120 >UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Francisella RepID=A0Q6R1_FRATN Length = 1141 Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust. Identities = 491/1140 (43%), Positives = 726/1140 (63%), Gaps = 39/1140 (3%) Query: 24 GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM----VMNLADWETLPYD 79 G+A + L E +++ +++ D Q A +++ E+ ++ + E LPYD Sbjct: 18 GSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNNSKVDILFFPNLEILPYD 77 Query: 80 SFSPHQDIISSRLSTLYQLPTM-QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 FS DIIS R LY++ Q ++I ++ ++++ P SF+ H+ ++K G L Sbjct: 78 RFSASIDIISRRQEILYKMTHQPQNTLIITSISNTLRKIAPASFIQEHSFILKTGDNLDI 137 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 + L AGY V+ V E GE++ RG+++D++P+GS++ +R+D FD+EIDS++ + + Sbjct: 138 TKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPIGSKVAFRIDLFDNEIDSIKELNTE 197 Query: 199 SQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIE 258 SQR+ ++++IN++P+HE + + K I + +GIE Sbjct: 198 SQRSGNQIQSINIMPSHELVYNNQNTTFALDKLNKLCGDKALNSTIATYIQNNEYFSGIE 257 Query: 259 YWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQ 318 ++ PLF+ + L L+ Y P +T + ++ S E F + R+ D RP+LP Q Sbjct: 258 FYLPLFY-DKLSSLYDYLPPSTNIHLVDNITNSIEAFSDEVKFRYNELKHDSDRPILPFQ 316 Query: 319 SLWL---RVDELFSELKN--W---PRVQ---LKTEHLPTKAANANLGFQKLPDLAVQAQQ 367 ++ + +++ + KN W P+ + LK +HL +AN L Sbjct: 317 EIFYSQQEIQDIYQQYKNIKWFQQPKSKSKILKVDHLEKISANYKLA------------- 363 Query: 368 KAPLDALRKFLE--TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR-- 423 P L++F++ FD V+FS +S GR E L E L ++ + Q +EA + Sbjct: 364 -NPFKDLQQFIDKSNFD-KVIFSTDSNGRAELLLEHLNKLNLNIQSCKNFNEAIEASTKF 421 Query: 424 YLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPV 483 L+I + G + + +ALI E+DL E + S+ +P +++L +L G V Sbjct: 422 CLIISPFQEGMI-IDKKIALITEADLFPEHSYNSTKVSQHDHHPTVDLKDLTDLKPGMHV 480 Query: 484 VHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLH 543 VH++HG+GRY G+ ++E G E+++L YANDAK+YVP++SL+LIS Y E L+ Sbjct: 481 VHIDHGIGRYEGLESIELNGKKDEFILLRYANDAKIYVPITSLNLISIYNSSLTEKIALN 540 Query: 544 KLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTP 603 KLG D W + ++K +K+ DVAA LL+IYA+R ++GF+ D E+Y FC FP+E TP Sbjct: 541 KLGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETP 600 Query: 604 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQ 663 DQ AIN V DM MDRL+CGDVGFGKTE+AMRAAFLA N KQVA+LVPTT+LAQ Sbjct: 601 DQLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQ 660 Query: 664 QHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 723 QHY++F+DRF N V IE+I+R ++ K Q Q+ ++ +G +DI+IGTHKL+ S + FK+L Sbjct: 661 QHYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNL 720 Query: 724 GLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 783 GLLI+DEEHRFGV KE++K+++A +DILT++ATPIPR+L+MA S +RDLSIIA+PPA+R Sbjct: 721 GLLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALRDLSIIASPPAKR 780 Query: 784 LAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHG 843 L+VKTFV+EYD+ ++REA+ RE +RGGQ++YLYN VE IQK E L EL P RIAI HG Sbjct: 781 LSVKTFVKEYDNNIIREAVSRETIRGGQIFYLYNKVETIQKKKEILQELFPRLRIAIAHG 840 Query: 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903 QM E+E+++VM DF H ++++L+CTTIIETGIDIP ANT+IIE A++ GLAQLHQLRGRV Sbjct: 841 QMSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRV 900 Query: 904 GRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQ 963 GRSHHQAYA++L P+ ++T DA KRLEAI++ E LG GF LA HDLEIRGAGE+LGEEQ Sbjct: 901 GRSHHQAYAYMLIPNEASITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQ 960 Query: 964 SGSMETIGFSLYMELLENAVDALKAGREPSLED-LTSQQTEVELRMPSLLPDDFIPDVNT 1022 SG+++ IG +LYM+LL+ + L+AG+E ++E+ + S EVEL +P+L+PD +I DVNT Sbjct: 961 SGNIDGIGLNLYMDLLDKTIANLRAGKELNIEEVINSTVCEVELNIPTLIPDYYIYDVNT 1020 Query: 1023 RLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNE 1082 RL+ YKRI+ A + +L IK+ELIDRFG LP LL +A ++ A LGI +++ Sbjct: 1021 RLNIYKRISKA-SHQDLVNIKIELIDRFGKLPLEVLYLLKVAHIKIDAIALGISQIKMFA 1079 Query: 1083 KGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 G I F+ LI L+Q Q +RL L + + RIE++ F++++ Sbjct: 1080 TSGKISFSNNTKFELQKLIKLIQSQHSDFRLTKEHDLIITKVTKTAEQRIEFIENFLKKI 1139 >UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bacteria RepID=A0L867_MAGSM Length = 1198 Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust. Identities = 508/1190 (42%), Positives = 722/1190 (60%), Gaps = 79/1190 (6%) Query: 18 LLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM---VMNLADWE 74 +L ELT A + L E+A PVVL+ +Q A + E+ F Q ++ WE Sbjct: 22 ILPELTTGASSWLAVELALTQPAPVVLVTGKVQRAESIARELLFFGAQRGVHILPFPAWE 81 Query: 75 TLPYDSFSPHQDIISSRLSTLYQLPTM--------------QRGVLIVPVNTLMQRVCPH 120 TLP++ SP+ ++ RL+TL +L + R V+I +MQR+ P Sbjct: 82 TLPFEPLSPYGPLVGDRLATLSRLIGLGKSGPISIGNELGDSRTVVITTPAAIMQRLMPK 141 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 + L + G +L+ R L +GY V QV E GEYA RG L+DLFP G + P Sbjct: 142 AVLARYGFAFSVGDQLNLPQFRELLTRSGYNPVSQVSEPGEYAARGGLIDLFPPGRDEPV 201 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R++ F DE++S+R+FD +QR+L+ + A+ +LP E + I FR+ +R+ F Sbjct: 202 RVELFGDEVESIRLFDPSNQRSLDPIPAVEVLPVREVILNADTISCFRTAYREVFGGYAA 261 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAER------ 294 + IY+++S+ G+E + PLF+ + L LF Y P TL + D+ E Sbjct: 262 EDLIYKEISQNRTYQGMEQYLPLFYPD-LDTLFDYLPKQTLFLMEPDVPNQIEERAREIE 320 Query: 295 ------FQADTLARFENRGVD--PMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPT 346 +QA + +G D MR + +L+L EL LK +P++ P Sbjct: 321 DQHRIAYQA---GQGNEKGYDGSSMR-CIARNTLYLDQRELTERLKPYPQLLQSATGKPA 376 Query: 347 KAANANLGFQKLP---------DLAVQAQQKAP---LDALRKFLETFDGP---VVFSVES 391 +L +P D + Q ++KA +D L + + + + F + Sbjct: 377 ----LDLDLHPIPPIQEGVQGADHSQQDEKKATATVMDRLCRQISLWQKEQRRIGFVSRT 432 Query: 392 EGRREALGELLARIKIA---PQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESD 448 G+RE + ELL K++ L +A R L++G GF R++ LI E + Sbjct: 433 IGQRERMRELLTDHKVSVVDGSSWSALLQADPRQPMLLLGDVSDGFEHPTRHVVLISEDN 492 Query: 449 LLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY 508 + G R R+ D LI + A+L+ G VVH++HGVGR+ G+ +LE G + ++ Sbjct: 493 VFG---VRIRRRQISRRYLDQLIASFADLNEGDAVVHVDHGVGRFGGLVSLEVGQLKNDF 549 Query: 509 LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAEL 568 L++ YA+ KLYVPV +L + +++ G E L KLGG W++ R KA +K+ ++A EL Sbjct: 550 LLIIYADGDKLYVPVENLDRVGKHSSG--EEVQLDKLGGKRWAKTRAKARKKILEMAEEL 607 Query: 569 LDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCG 628 + I AQR A +G + YQ F +FPFE T DQA+AI AVL DM P AMDRLVCG Sbjct: 608 VAIQAQREATQGVVYSGPDALYQEFASTFPFEETVDQAKAIEAVLEDMASPKAMDRLVCG 667 Query: 629 DVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRS 688 DVGFGKTEVA+RA F A + KQVA+LVPTT+LAQQHY+NF R A +P++++++SRFR+ Sbjct: 668 DVGFGKTEVALRATFRAAMDGKQVAILVPTTILAQQHYENFAKRLAGYPIKVDILSRFRT 727 Query: 689 AKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRAN 748 KEQ + V G ID+++GTH+LLQ+DVKFKDLGLL+VDEE RFGV HKERIK +RA Sbjct: 728 PKEQKATIEAVGHGTIDVIVGTHRLLQTDVKFKDLGLLVVDEEQRFGVSHKERIKNLRAT 787 Query: 749 VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILR 808 +DILTLTATPIPRTLNMAM+G+RD+SIIA+PPA RLA++T + YD VREAILRE+ R Sbjct: 788 LDILTLTATPIPRTLNMAMAGVRDISIIASPPADRLAIRTIITHYDKQQVREAILRELYR 847 Query: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868 GGQV+Y++N V++I++ A+ +AELVPEAR+ + HGQMRE +LE+VM +F+ Q FN+LVCT Sbjct: 848 GGQVFYVHNQVQDIERKAQEIAELVPEARVGVAHGQMRENQLEKVMMEFYRQTFNILVCT 907 Query: 869 TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQK 928 TI+E G+DIPTANTIII+RAD FGLAQLHQLRGRVGRS H+AYA++L PH + +T A+K Sbjct: 908 TIVENGVDIPTANTIIIDRADKFGLAQLHQLRGRVGRSKHRAYAYMLVPHLRRLTKHAEK 967 Query: 929 RLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKA 988 RLEA+ SL +LGAGF LATHDLEIRGAG +LG+EQSG ++ +GF LY ++L AV AL+ Sbjct: 968 RLEALESLGELGAGFMLATHDLEIRGAGNILGDEQSGQIKEVGFELYNQMLREAVVALQT 1027 Query: 989 --------------GREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK 1034 G+ P E + L + + +P++++ DV+ RL+ YKRIA K Sbjct: 1028 ARAQGRDLASTTPLGQAPVDEGPAPVVPSINLHLSTYIPEEYVEDVHQRLTLYKRIAELK 1087 Query: 1035 TENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH 1094 T EL+E+++EL DRFG LP LL + +++ KL I KL+ KGG +F E Sbjct: 1088 TYEELQEMRLELADRFGPLPATVDHLLSVMEIKRLCVKLRIIKLDAGPKGGTFQFDELFT 1147 Query: 1095 VNPAWLIGLLQKQPQHYRLDGPTRLKFIQD--LSERKTRIEWVRQFMREL 1142 V LI ++Q++ H RLD +R +++ SE K R++ VR+ + L Sbjct: 1148 VEIPRLIAMVQREVGHARLDQTSRTLILRNRPWSEDKQRLQEVREALTTL 1197 >UniRef50_P57381 Transcription-repair-coupling factor n=4 Tax=Buchnera aphidicola RepID=MFD_BUCAI Length = 812 Score = 887 bits (2292), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/794 (52%), Positives = 578/794 (72%), Gaps = 1/794 (0%) Query: 355 FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMR 414 +QKL DL + + L +L +F G ++FS+ E + + L R KI PQ I R Sbjct: 19 YQKLLDLFYNVNNQKKNNQLLSYLYSFSGKIIFSLTEEKSLKKILRFLMRHKIHPQYIKR 78 Query: 415 L-DEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRN 473 + D + + MI ++GF+D N+ +C DLL + + + + + N Sbjct: 79 IIDIKKEIDYFYMIEEIKNGFIDKKNNILFLCTKDLLPILIDDKYIGNIKKNTNNINKFN 138 Query: 474 LAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYA 533 L++L + PV+H+EHG+GRY G+TT+E I EYL+++YA KLYVPVS+LHL+S Y Sbjct: 139 LSQLILNHPVMHIEHGIGRYKGLTTIETASIQSEYLVISYAEGDKLYVPVSNLHLVSPYT 198 Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 G + ENAPLHKLGGD W++ + K ++ V D AA+LL IYA+R +K GFAFK + E+Y LF Sbjct: 199 GTSIENAPLHKLGGDDWNKEKHKISKTVYDHAAQLLHIYAKRESKTGFAFKKNIEKYDLF 258 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 C+ F+TT DQ + + VL DM +P+ MDRL+CGDVGFGKTE+AMRA+FLAV N KQVA Sbjct: 259 CNDCSFKTTSDQNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVA 318 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 +LVPTTLLAQQHY NF+ RF+NWPV I ++SRF++ KEQ I G+I+I+IGTHKL Sbjct: 319 ILVPTTLLAQQHYKNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTHKL 378 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 L ++++ LGLLI+DEEHRFGV HKE IK + +N+DILTLTATPIPRTLNMAM+G++DL Sbjct: 379 LFKNIEWCSLGLLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIKDL 438 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 SIIA PPA+RLA+KTF++EY +++R+ ILREI RGGQVYY+YN V+NI AERL+ L+ Sbjct: 439 SIIAKPPAQRLAIKTFIQEYSPILIRKTILREISRGGQVYYIYNKVQNIMNIAERLSILI 498 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 PEA I IGHGQM+ +L++VMN+F++ +FNVL+CTTIIE+G+DI ANTIIIE +DHFGL Sbjct: 499 PEASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHFGL 558 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 +QLHQLRGR+GRS++QAYA LL + +T+DA+KRLEAI+S+++ G GF+L+ DLEIR Sbjct: 559 SQLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLEIR 618 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLP 1013 G GE+LG+EQSG ++ IGFSLYM+LL+NA+D LK G+ S+E + E++L + SLLP Sbjct: 619 GVGEILGKEQSGHIKNIGFSLYMDLLKNAIDLLKNGKIFSVEKSLKKPLEIDLHVSSLLP 678 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKL 1073 +I D+NTRL FYK++A+A E ++EEIK ELID+FG LPD ++ L+ IA++R A K+ Sbjct: 679 SSYILDINTRLFFYKKLANAIHEKQIEEIKYELIDQFGKLPDFSKNLILIAKIRLIADKI 738 Query: 1074 GIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIE 1133 GI+ ++ N G+IEF + +N +L+ + QK+P+ ++++ TR+KFI L R++ Sbjct: 739 GIKYIKSNNNIGIIEFNDYGSINTEYLLKMFQKEPKIWKMETSTRIKFILHLKNDYLRLK 798 Query: 1134 WVRQFMRELEENAI 1147 W+ +R L + I Sbjct: 799 WIINLLRNLFKKNI 812 >UniRef50_A5EV48 Transcription-repair coupling factor n=2 Tax=Cardiobacteriaceae RepID=A5EV48_DICNV Length = 1117 Score = 872 bits (2253), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/1089 (43%), Positives = 678/1089 (62%), Gaps = 41/1089 (3%) Query: 43 VLIAPDMQNALRLHDEI-----SQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQ 97 +++APD A L+D + + Q + +DWETLPYD ++PH D++S R+ L + Sbjct: 31 LIVAPDAVWAQYLYDNLMFWLKNSAWQQTLYYFSDWETLPYDHYTPHPDLVSERIRVLAE 90 Query: 98 LPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVM 157 LPT+ +G++I + QR+CP + L + G +++ + +L AGY+ + Sbjct: 91 LPTLTQGIVITSTSAFRQRLCPQTHLDKFGIHCAVGDHIAQKTVINRLLQAGYQSTHFIS 150 Query: 158 EHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF 217 E GEYATRG ++DLFPM ++ P RL++ DDEIDS+R FD+ +Q TL++ + +++LPA E Sbjct: 151 EKGEYATRGNIVDLFPMAAQTPIRLEWLDDEIDSIRFFDLKTQLTLKKCQQLSILPAREL 210 Query: 218 PTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFP 277 A FR R F IYQ +S+G P G+EY+ PLFF E L YFP Sbjct: 211 DLSDAGRVCFRQSARQYFGEHIHQSGIYQSLSEGRTPQGLEYYLPLFFDET-AHLLDYFP 269 Query: 278 ANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRV 337 +NT + +L S + R++ LL P+ LW EL L P Sbjct: 270 SNTCYIPADELAVSLQNHDDYCHKRYQRLNHLRENSLLAPEQLWFSPQELQERLATLP-- 327 Query: 338 QLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGP--VVFSVESEGRR 395 H+P A L F D + QQ +LE F V S+G R Sbjct: 328 ----THMPKNRCTA-LPFS---DETPRGQQ---------WLEQFATAERAVLHFSSQGLR 370 Query: 396 EALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFV-DTVRNLALICESDLLGERV 454 E + L + PQ ++ + L I ++ F D + +LA E+D G Sbjct: 371 EYWFDRL--YQEYPQCLISDELPPKNYPALCISPLQYSFCADGITHLA---ETDRHGSHT 425 Query: 455 A-RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTY 513 RQ+ + + +I++L +L +G PVVH++HGVGRY G+ ++ E L++ Y Sbjct: 426 TPNYRQNKHK--DAGAIIQSLQDLTLGAPVVHIDHGVGRYRGLEMID----DDEMLVIEY 479 Query: 514 ANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYA 573 A A+L+V +S L LIS+Y+G A ENAPLH+LGG W A++KA + RD AAELL IYA Sbjct: 480 AKGARLFVAISDLDLISKYSGTASENAPLHELGGKVWQNAKKKAQQTARDTAAELLAIYA 539 Query: 574 QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFG 633 R A A D F F +ETTPDQ AI+AVL+D+ Q MDR+VCGDVGFG Sbjct: 540 AREAASAQALTFDPHMLADFAQQFEYETTPDQQAAIDAVLNDLQQAKPMDRIVCGDVGFG 599 Query: 634 KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT 693 KTEVAMRAA+ AV Q A++ PTTLLA QH NF DRF++ VRI ISRF++ EQ Sbjct: 600 KTEVAMRAAYAAVLAGYQCAIITPTTLLADQHVHNFLDRFSHIAVRIAAISRFKTPAEQR 659 Query: 694 QILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILT 753 I+ + +G IDI+IGTH+LLQ D+ F LGL+IVDEEHRFGV+HKE +K++RA+V++LT Sbjct: 660 AIVQSLRDGTIDIVIGTHRLLQKDIAFARLGLVIVDEEHRFGVKHKEALKSLRADVNLLT 719 Query: 754 LTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVY 813 LTATPIPRTLN+A+SG+RDLSIIAT PA R +++T + +YD +V+ EA RE+ RGGQ+Y Sbjct: 720 LTATPIPRTLNLALSGLRDLSIIATAPAGRQSIQTIISQYDPIVIEEACERELNRGGQIY 779 Query: 814 YLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 873 +L+NDV +I + A L+E +P+ARIA+ HGQ+RER LE++M DF+++ +++LV +TIIE+ Sbjct: 780 FLHNDVSSIDRIARALSEQLPQARIAVAHGQLRERALEKIMQDFYNRHYDLLVASTIIES 839 Query: 874 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAI 933 GIDIP ANTIII RAD GLAQLHQLRGRVGRSHHQAYA+L+TP + + DAQ+RL A Sbjct: 840 GIDIPNANTIIINRADKLGLAQLHQLRGRVGRSHHQAYAYLITPAWQTLNKDAQRRLSAF 899 Query: 934 ASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPS 993 L+ LGAGF LA+ DLEIRGAGE+LG+EQSG ++ IG S Y++LLE A ALK+G++ + Sbjct: 900 TELDSLGAGFLLASQDLEIRGAGEILGDEQSGQIQQIGMSYYLDLLERATAALKSGQDFN 959 Query: 994 LEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLL 1053 E++ + + ++++ +LLPD ++ D RL+ Y R+A AK+ E++++ +EL DRFG L Sbjct: 960 QEEI-AVRYQIDIGEAALLPDTYVFDPQIRLTLYHRLARAKSIAEIDDVMIELSDRFGSL 1018 Query: 1054 PDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRL 1113 P A+ L ARL AQ +GI K+ K ++F ++ LI LQ+ PQ Y++ Sbjct: 1019 PVLAQNLCHKARLHVYAQLIGIEKIRLQTKTIELQFLPTATIDANKLIEKLQRDPQCYKM 1078 Query: 1114 DGPTRLKFI 1122 PT ++ + Sbjct: 1079 TAPTSVRIL 1087 >UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T2A9_9ZZZZ Length = 1150 Score = 848 bits (2191), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1133 (38%), Positives = 695/1133 (61%), Gaps = 10/1133 (0%) Query: 20 GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ--MVMNLADWETLP 77 G+L G++ +AE + ++IAP++ +A L +EI+ F++ + L D E LP Sbjct: 23 GQLYGSSINLALAERIKNDLDFKIVIAPEINSAEILCNEINYFSETGLSIELLPDLEILP 82 Query: 78 YDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLS 137 YD SP +I+SR L+QL VL++ ++L+ ++ P + + + G+ S Sbjct: 83 YDVSSPSNQVIASRSEILFQLLKGNIDVLVLNASSLLWKLPPRKYFEKESFTLSVGELFS 142 Query: 138 RDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDV 197 + +L GY V V++ GE+ RG+L+DLF P R+DF D++ID +++FDV Sbjct: 143 MQQIGEKLRINGYERVSTVIKPGEFCIRGSLIDLFSPLYTNPIRIDFDDEKIDLIKLFDV 202 Query: 198 DSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGI 257 DSQ TL + ++ ++P+ +P A + F++ R+ F+ + +Y + G+ Sbjct: 203 DSQLTLNTINSVTIIPSEHYPKSSLAFDFFKTNMRNAFDGNQLEWPLYNFIETYAESHGV 262 Query: 258 EYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPP 317 + PLFF E + ++ Y T L GD++T + +Q RF N + +P L P Sbjct: 263 YNYLPLFF-ESMSSIWDYCKPGTELFCVGDIKTPIKDYQKLINQRF-NSQDNLSQPNLKP 320 Query: 318 QSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDAL-RK 376 L+ E +++ + L+ + + ++ F P + A + + +D + Sbjct: 321 SELFFSATEQINKINEMHPINLQHQKCWKSHDHNSINFDTRPLEPLTAFKTSSMDKIIHG 380 Query: 377 FLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR--GRYLMIGAAEHGF 434 LET ++ S S+ R + L IA +R+ +E +R G ++ + F Sbjct: 381 LLETSTNKILLSAGSKNRIAFIENQLREFSIASRRVSNWNEFLERRAGVFVTEKSISESF 440 Query: 435 VDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYA 494 + +A+I E +L G R + R+ S +P+++I++L +L +G VVH EHG+G+Y Sbjct: 441 ITAKSGIAVIGEIELFGRRSSTRKYRSPAGKDPESIIQDLKDLQVGSLVVHGEHGIGKYK 500 Query: 495 GMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRAR 554 G++ + + E+L + YA L+VPV+ + +SR+ G + + + L LG + W + Sbjct: 501 GLSVMMVDNVNSEFLTIEYALGDLLHVPVTLMDQVSRFIGQSSDESILSHLGSNQWKKLC 560 Query: 555 QKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLS 614 +K ++ DVAAELL+IYA RA G + +++ Y+ FCD F + T DQA+ I VL Sbjct: 561 KKTKKQAYDVAAELLEIYANRAIAVGKSHVANQKDYENFCDGFEYVLTQDQAKVIEDVLD 620 Query: 615 DMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA 674 DM +MDRLVCGDVGFGKTEVA+RAAF N QVA+LVPTT+LAQQH++ F +RF+ Sbjct: 621 DMAASKSMDRLVCGDVGFGKTEVALRAAFTCAINGYQVALLVPTTILAQQHFETFNERFS 680 Query: 675 NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRF 734 WP+ I ++SR +++K Q+ A + +GK DI+IGTH LL V +K+LGL+IVDEEHRF Sbjct: 681 EWPIAINILSRLQTSKNNNQVRAGIEKGKADIIIGTHALLSDKVVYKNLGLVIVDEEHRF 740 Query: 735 GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYD 794 GVRHKE++KA+R +VD L LTATPIPRTLNMA+ ++D+S+IATPP R+ VKT++ ++D Sbjct: 741 GVRHKEKLKALRKDVDYLALTATPIPRTLNMAIGELKDISMIATPPEGRIPVKTYISQWD 800 Query: 795 SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 854 ++ EA REI RGGQV +++N +++I+ AE + +++P + I HG+M+ER LERVM Sbjct: 801 KSLIHEACQREISRGGQVLFVHNRIDDIENMAETIRQIIPVGSLEIAHGRMKERSLERVM 860 Query: 855 NDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL 914 F++ F++L+ T+IIE+G+DIP ANTIII RAD FGLAQLHQLRGRVGRS Q+YA+L Sbjct: 861 MKFYNNEFDILLATSIIESGLDIPNANTIIINRADRFGLAQLHQLRGRVGRSERQSYAYL 920 Query: 915 LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSL 974 + P +T + ++RLEAI ++EDLG GF LATHDLEIRGAGE+LG+EQSG ++ IGFSL Sbjct: 921 MIPSKHTLTNEGRQRLEAIEAIEDLGVGFILATHDLEIRGAGEILGDEQSGQIQKIGFSL 980 Query: 975 YMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK 1034 Y ++L A+D+L+ G P ++ T+ +++ L +P+L+P++++PDVN RL+ YKRI+S K Sbjct: 981 YKDMLAQAIDSLRDG--PQMQS-TTISSDINLNIPALIPENYMPDVNLRLTMYKRISSTK 1037 Query: 1035 TENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH 1094 ++ E++ I+ ELIDRFG LP+ LL +A L+ QA LGI+K+ + + G F + Sbjct: 1038 SKIEIKHIESELIDRFGELPEQTTNLLLMAHLKNQANTLGIKKIRMDRRYGRFYFDQSTT 1097 Query: 1095 VNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAI 1147 + +I L++++P +++ L F D RI V + L +++ Sbjct: 1098 IEAQNIIDLIEREPDVFKMYPDQSLGFKGDFPLVLDRINQVNTILGYLVGDSV 1150 >UniRef50_Q89AK2 Transcription-repair-coupling factor n=3 Tax=Gammaproteobacteria RepID=MFD_BUCBP Length = 697 Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/665 (55%), Positives = 495/665 (74%) Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 I +L++L I QP+VH EHGVGRY G+TT+ I E +++ YA ++KLYVP++ L+LIS Sbjct: 24 ICDLSKLKINQPIVHFEHGVGRYQGLTTVTTRNIKTECVVINYAQNSKLYVPITYLYLIS 83 Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 RY G ++++ PLH+LG D W++ ++KA EK D AA LL+IY+ R +++GF+FK +Y Sbjct: 84 RYIGTSKKDIPLHRLGNDLWNKEKKKANEKAYDSAAILLNIYSHRISQKGFSFKKHHTKY 143 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 ++FC+ FPF TPDQ AIN+VLSDM + MDRLVCGDVGFGKTEVAMRA FLAV N K Sbjct: 144 KIFCERFPFTLTPDQDSAINSVLSDMYKSTPMDRLVCGDVGFGKTEVAMRATFLAVCNQK 203 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 QVA+LVPTTLLAQQH++NF RF W +IE++SRF+S + +I+ V G + +LIGT Sbjct: 204 QVAILVPTTLLAQQHFNNFTLRFKYWSTKIEILSRFQSETKCNEIINNVNIGNVHVLIGT 263 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 HK+L ++K+K+LGLLIVDEEHRFGV HKE+IK + N+D+LTLTATPIPRTLNMA G+ Sbjct: 264 HKILLKNLKWKNLGLLIVDEEHRFGVHHKEQIKLISNNIDVLTLTATPIPRTLNMAFVGI 323 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 RDLSIIATPP +RL VKTFVRE+ V+R+AILREILRGGQVYY+YN+V I++ L Sbjct: 324 RDLSIIATPPKQRLIVKTFVREFSYTVIRKAILREILRGGQVYYIYNNVNKIERKKIELK 383 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 +LVPEA I IGHGQ+R +LE +MNDF+H+RFNVLVC+TIIETGIDIP NTIIIE A++ Sbjct: 384 KLVPEANIRIGHGQLRSTDLESIMNDFYHKRFNVLVCSTIIETGIDIPNVNTIIIENANN 443 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 FGLAQLHQLRGRVGRS HQAYAWLL P K + +DA+KR++AI S+E G+ F LA DL Sbjct: 444 FGLAQLHQLRGRVGRSQHQAYAWLLVPSLKDIKSDAKKRIDAITSIESFGSCFELANRDL 503 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS 1010 EIRG GE+LG QSG + IGFSLYM+LL NAV +K G L D+ + ++EL + + Sbjct: 504 EIRGIGEILGNNQSGHITKIGFSLYMKLLMNAVRNIKNGYYKPLNDIINTYPKIELNVSN 563 Query: 1011 LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQA 1070 LLPD +I VN RL FY +IA++ +LE+I++ L FG LP+ L+ IA++R + Sbjct: 564 LLPDSYIKKVNHRLFFYNKIATSNNFLDLEKIRLTLCKNFGNLPNSGDYLIKIAKIRLIS 623 Query: 1071 QKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKT 1130 +K+G++K++ + KGG IEF E + +N L+ +K+ ++ D RL+F ++ Sbjct: 624 KKIGVKKIKSDVKGGYIEFFEDSKINIQNLLKEFKKEKNCWKFDTSNRLRFSKNFKNNSE 683 Query: 1131 RIEWV 1135 RI+W+ Sbjct: 684 RIDWI 688 >UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Deltaproteobacteria RepID=Q39PS2_GEOMG Length = 1158 Score = 793 bits (2047), Expect = 0.0, Method: Compositional matrix adjust. Identities = 474/1133 (41%), Positives = 677/1133 (59%), Gaps = 36/1133 (3%) Query: 9 LPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-- 66 L K G L G L G+A A L+A++ + P+++IAPD A + E+ F+ + Sbjct: 16 LAPKTGRVTLTG-LKGSAPAYLLAQLLKTAERPLLVIAPDADRAAEICTELRFFSGRPFD 74 Query: 67 VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGH 126 V++ W+ P++ SPH D+ RL+ L +L + ++ + L QRV P + L Sbjct: 75 VLSFPAWDVAPFEKGSPHADVTGQRLACLRRLMDRKTAAVVTTPDALRQRVLPRTMLDNA 134 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 +L G+ +RD +L + GY +V V + G +A RG ++D+FP G E P R++FF Sbjct: 135 SLYFLPGEESNRDEFLAKLVTLGYLNVPLVEDRGTFAVRGGIVDIFPPGFEQPVRIEFFG 194 Query: 187 DEIDSLRVFDVDSQRTLEEVEAINLLPAHEFP-TD---KAAIELFRSQWRDTFEVKRDPE 242 D ++++R FD SQR+L +E + LLP+ E TD K+A +++ D E+ Sbjct: 195 DFVETIRAFDPLSQRSLAPLEELLLLPSREMVLTDEVLKSASHHIKARC-DELEISPVAR 253 Query: 243 -HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF-PANTLLVNTGDLETSAERFQADTL 300 + +Q+ +G P G+E+ PLF L LF Y A ++++ L ERF + L Sbjct: 254 RELLEQLQQGLYPTGVEWLLPLFHPR-LETLFDYAGDAVRVVLDPEALAEEDERFDRE-L 311 Query: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLK----TEHLPTKAANANLGFQ 356 E++ + P +L E ++ V + T K A A L Q Sbjct: 312 VTAEDQARERGDLFASPAEFFLTASETAGSIEAGRLVTIPYLTVTGESDEKTALA-LDIQ 370 Query: 357 KLPDLAVQAQQKAPLDALRKFLETFDG------PVVFSVESEGRREALGELLARIKIA-- 408 + DL V + L+ + +G V+ + G+ + L ELL+ + Sbjct: 371 ENTDLKVDVSSDSE-RILKPLVTRLNGWLEERQRVIVACHQRGQAQRLYELLSHYPLPLN 429 Query: 409 -PQRIMRLDEASDRGRY-LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTIN 466 R + D G+ ++IG GF L +I E ++ G R RR R Sbjct: 430 ISDRPFPAERERDDGKVDVVIGDLSRGFRLPEEKLIVIAEEEIFGRRQKRRGVSELRK-- 487 Query: 467 PDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSL 526 ++ +LAEL G +VHL+HG+G Y G+ + G G++++L YA KLY+PV L Sbjct: 488 -KQIMTSLAELKPGDYMVHLDHGIGIYRGLQHISLSGCAGDFILLEYAGGDKLYLPVDRL 546 Query: 527 HLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 +L+ RY G + KLGG +W +A+ KA V+++A ELL IYA R EG AF Sbjct: 547 NLVQRYVGAEGLEPRVDKLGGTSWEKAKGKARAAVQEMAGELLQIYAARQLHEGHAFSPP 606 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 + Y+ F SF +E T DQ AI V+ DM MDRLVCGDVG+GKTEVAMR AF AV Sbjct: 607 DDLYREFEASFAYEETSDQMSAIMDVIGDMTSAKPMDRLVCGDVGYGKTEVAMRGAFKAV 666 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 + KQVAVLVPTT+LAQQH + F+ R +PV +EM+SRFR+ KEQ +IL +V +G ID+ Sbjct: 667 MDGKQVAVLVPTTVLAQQHLETFKARLGAYPVTVEMLSRFRTPKEQKEILEKVKKGAIDV 726 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 +IGTH+LLQSDV FKDLGLLIVDEE RFGV HKE++K +A VDILTLTATPIPRTL M+ Sbjct: 727 IIGTHRLLQSDVTFKDLGLLIVDEEQRFGVTHKEKLKKYKAVVDILTLTATPIPRTLYMS 786 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 M G+RDLSII TPP RLAVKTFV ++REA++RE+ RGGQ+++++N V++I A Sbjct: 787 MMGIRDLSIIDTPPVDRLAVKTFVARSSDDLIREAVMRELRRGGQIFFVHNRVQSIMNWA 846 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 E L +VPEA+IA+GHGQM E ELE+VM F H N+L+CTTIIE+G+DIP ANT+II+ Sbjct: 847 EHLRRIVPEAKIAVGHGQMDEGELEKVMLGFMHGETNLLLCTTIIESGLDIPNANTLIID 906 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 RAD FGLAQL+QLRGRVGRS +AYA+LL P A+++DA++RL+ I L +LGAGF LA Sbjct: 907 RADTFGLAQLYQLRGRVGRSKQRAYAYLLIPGEGAISSDARERLKIIQELTELGAGFRLA 966 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVEL 1006 THDLEIRGAG++LG +QSG++ +GF LY ELLE A+ LK E L + E+ L Sbjct: 967 THDLEIRGAGDILGAKQSGNIAAVGFDLYTELLEEAIQNLKGE-----ERLERVEPEINL 1021 Query: 1007 RMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARL 1066 R+P+ +P+D++ + N RL YK++ A++E E++E+ EL+DRFG LP A LL++ +L Sbjct: 1022 RIPAFVPEDYVREPNQRLIIYKKLTQAESEEEVDEVMAELVDRFGKLPLAATYLLEVMKL 1081 Query: 1067 RQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRL 1119 R ++ I E + + + F +K V P +IGL++ P+ Y+ RL Sbjct: 1082 RIHFKRFLITMAEFDGRRLCLSFHQKTPVPPDTIIGLIRSNPKRYQFSPDFRL 1134 >UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=cellular organisms RepID=A1KUB2_NEIMF Length = 1375 Score = 791 bits (2043), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/723 (55%), Positives = 530/723 (73%), Gaps = 7/723 (0%) Query: 428 GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTIN---PDTLIRNLAELHIGQPVV 484 G E V +A+I ESDL + VAR R +RR + D L+R+LAE++IG PVV Sbjct: 655 GWGEGKAVAAQSAIAVITESDLY-QYVARSRVHNRRKKHAAVSDGLLRDLAEINIGDPVV 713 Query: 485 HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544 H EHG+GRY G+ T++ GG T E ++L YA +A+LYVPVS LHLISRY+G A EN LHK Sbjct: 714 HEEHGIGRYMGLITMDLGGETNEMMLLEYAGEAQLYVPVSQLHLISRYSGQAHENVALHK 773 Query: 545 LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604 LG AW++A++KAAEK RD AAELL++YAQRAA+ G F+ + YQ F D F +E T D Sbjct: 774 LGSGAWNKAKRKAAEKARDTAAELLNLYAQRAAQSGHKFEINELDYQAFADGFGYEETED 833 Query: 605 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 664 QA AI AV+ D+ Q MDRLVCGDVGFGKTEVA+RAAF+AV KQVAVL PTTLL +Q Sbjct: 834 QAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQ 893 Query: 665 HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 724 H NF DRFA++PV++ +SRF ++K L +A+G +DI+IGTHKL+Q +++FK LG Sbjct: 894 HAQNFADRFADFPVKVASLSRFNNSKATKAALEGLADGTVDIVIGTHKLVQDNIRFKSLG 953 Query: 725 LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784 L+I+DEEHRFGVR KE++K +RANVDILT+TATPIPRTL+MA+ G+RD S+I T P+RRL Sbjct: 954 LVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRL 1013 Query: 785 AVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 844 AVKTFV+ + VREA+LRE+ RGGQV++L+N+V+ I+ ERL L+PEARI + HGQ Sbjct: 1014 AVKTFVKPFSEGSVREAVLRELKRGGQVFFLHNEVDTIENMRERLETLLPEARIGVAHGQ 1073 Query: 845 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 +RERELE+VM DF QRFNVL+C+TIIETGIDIP ANTIII RAD FGLAQLHQLRGRVG Sbjct: 1074 LRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVG 1133 Query: 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 964 RSHHQAYA+LLT P+ +T DA+KRL+AIA+ ++LGAGF LA DLEIRGAGE+LGE QS Sbjct: 1134 RSHHQAYAYLLT--PEYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQS 1191 Query: 965 GSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRL 1024 G M +GF+LY E+L+ AV LK GR+P L+ TE++L P+LLP+ + PD++ RL Sbjct: 1192 GEMIQVGFTLYTEMLKQAVRDLKKGRQPDLDAPLGITTEIKLHSPALLPESYCPDIHERL 1251 Query: 1025 SFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKG 1084 YKR+A +T ++ I EL+DRFGL P +TL++ LR A++LGI ++ + Sbjct: 1252 VLYKRLAVCETVQQINAIHEELVDRFGLPEQPVKTLIESHHLRLMAKELGIDAIDAAGEA 1311 Query: 1085 GVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 + F + N+V+P +I L+Q + YRL G +L+F ++ + RI V+ ++ L+ Sbjct: 1312 VTVTFGKNNNVDPTEIILLIQND-KKYRLAGADKLRFTAEMENIEVRINTVKNVLKTLQN 1370 Query: 1145 NAI 1147 + Sbjct: 1371 RCL 1373 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 158/357 (44%), Positives = 209/357 (58%), Gaps = 11/357 (3%) Query: 43 VLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM 101 V++ D + ALRL F + L DWETLPY+ FSPHQD++S RLS L+Q+ + Sbjct: 37 VVLTQDAEQALRLQTAWRFFRPHDTAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSG 96 Query: 102 QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGE 161 VL VPV T MQ++ P FL G +K GQ L L+T L AGY HV V+ GE Sbjct: 97 AADVLFVPVATAMQKLPPVPFLAGRTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGE 156 Query: 162 YATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDK 221 +A RG ++DLFPMGSE+PYR+D FDDEIDS++ FD D+QRT+ V I LLPAHEFPTD Sbjct: 157 FAVRGGIVDLFPMGSEMPYRIDLFDDEIDSIKTFDTDTQRTISPVSEIRLLPAHEFPTDS 216 Query: 222 AAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL 281 A ++FRS++R+ + + +Y+ VS G AG+EY+ PLFF L LF Y + L Sbjct: 217 EAQKIFRSRFREEVDGNPNDAAVYKAVSNGHFGAGVEYYLPLFFENELETLFDYIGEDAL 276 Query: 282 LVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKT 341 V+ GD+ A RF +D +R+ D P L PQ L+L D LKN+ +V Sbjct: 277 FVSLGDVHAEANRFWSDVKSRYAMAQGDETYPPLLPQHLYLSADVFAGRLKNYGQV---- 332 Query: 342 EHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREAL 398 LP + + LPDLAV Q PL AL+ F F+G ++ ES GRRE + Sbjct: 333 --LPDVSGKEH----ALPDLAVNRQSDEPLQALKDFQTAFEGRILLCAESLGRRETM 383 >UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Desulfuromonadales RepID=A1ALB0_PELPD Length = 1177 Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust. Identities = 453/1132 (40%), Positives = 668/1132 (59%), Gaps = 45/1132 (3%) Query: 18 LLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD--QMVMNLADWET 75 LL L G++ A ++A+I R ++++ PD A E++ F ++ W+ Sbjct: 28 LLPGLKGSSPACILADILARSTRTLLVLTPDQAAADEFLRELTFFASPSHAPLSFPAWDM 87 Query: 76 LPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 P+ + SPH DI +RL TL++L +++PV +QRV + + G+ Sbjct: 88 APFSATSPHPDISGARLDTLFRLQNGLARAVVMPVAAALQRVLGRGLFSESSCYLVSGEE 147 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 RD L +L GY +V V + G +A RG +LD+FP P R++FF D +++R F Sbjct: 148 FERDELLGRLVKMGYANVPLVEDRGTFAVRGGILDIFPPNLSAPVRIEFFGDTAETIRTF 207 Query: 196 DVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEH----IYQQVSKG 251 D +QR+L +E + LLP+ E + + + + P + I + + Sbjct: 208 DPLTQRSLHPLEELVLLPSREIILTDGVLADIAPRLKGCCDDLEIPANRRREILENLKSA 267 Query: 252 TLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPM 311 G+EY QPL L +F Y P +L + L+ A + T R G Sbjct: 268 VYFRGVEYLQPLLHPG-LETIFDYAPDASLAL----LDPQAIQEAITTFGRELEDGEATA 322 Query: 312 R----PLLPPQSLWLRVDELFSELKNWPRVQLKTEHL--PTKAANANLGFQKLPDLAVQA 365 R P P Q L+L ++L ++N R++L L P A + Q DL V Sbjct: 323 RQNGLPHSPRQELYLDGEQLRELMENRGRLELSGLLLEEPQGPAVITIPCQDNTDLRVTV 382 Query: 366 QQKA-----PLD-ALRKFLETFDGPVVFSVESEGRREALGELLARIKI-----------A 408 ++ PL +LR++L++ V+ + + E L ELL +I Sbjct: 383 SKETTQALTPLSRSLRQWLDS-GFRVLIACHQNAQAERLRELLTPYRIPCAISEASFAET 441 Query: 409 PQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPD 468 Q + D + D L+ G GF L LI E +L G+RV RRR S + Sbjct: 442 VQGEAQGDASPDGVVTLLQGDLSRGFRLLEARLVLIAEEELFGKRV-RRRGISE--VRKK 498 Query: 469 TLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHL 528 ++ +LAEL G +VH++HG+G Y G+ + G+ G++L+L Y KLY+PV L L Sbjct: 499 QILSSLAELKPGDHMVHVDHGIGLYRGLQHISVSGVGGDFLLLEYNGGDKLYLPVDRLAL 558 Query: 529 ISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDRE 588 + RY G + L KLGG +W +++ KA + + ++A ELL+IYA+R EGF+F E Sbjct: 559 VQRYVGPEGSSPSLDKLGGVSWEKSKGKARKAIEELAGELLEIYAKRQICEGFSFSPPDE 618 Query: 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 Y+ F SF +E TPDQ AIN VL+DM MDRLVCGDVG+GKTEVA+R AF A + Sbjct: 619 MYREFEASFAWEETPDQLSAINDVLADMQHSRPMDRLVCGDVGYGKTEVALRGAFKAALD 678 Query: 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 708 KQV VLVPTT+LAQQH++ F +R +PVR+E +SRFR+ KEQ IL + +G+IDI+I Sbjct: 679 GKQVGVLVPTTILAQQHFETFHERLKEYPVRVEALSRFRTPKEQKAILERLKKGEIDIVI 738 Query: 709 GTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMS 768 GTH+LLQ DV FKDLGLLI+DEE RFGV+ KER+KA RA VD++TLTATPIPRTL M+M Sbjct: 739 GTHRLLQKDVAFKDLGLLIIDEEQRFGVKDKERLKAFRAVVDVMTLTATPIPRTLYMSMM 798 Query: 769 GMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAER 828 G+RDLSII TPP RLAVKT V + +VREAI+RE+ RGGQV++++N V+ I K AE Sbjct: 799 GIRDLSIIDTPPVDRLAVKTIVARFSEELVREAIMRELRRGGQVFFVHNRVQTIAKRAEL 858 Query: 829 LAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 +A LVPEA+IA+GHGQM E+ELE+VM F H N+L+CTTIIE+G+DIP ANT+I++ A Sbjct: 859 IAALVPEAKIAVGHGQMGEQELEKVMLGFMHGETNLLICTTIIESGLDIPNANTLIVDHA 918 Query: 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATH 948 D FGL+QL+QLRGRVGRS + YA+LL P ++T+DA++RL+ + + +LGAGF +ATH Sbjct: 919 DRFGLSQLYQLRGRVGRSSQRGYAYLLIPGEGSLTSDARERLKILQDISELGAGFRIATH 978 Query: 949 DLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ-QTEVELR 1007 D+EIRGAG++LG QSG++ IGF LY ++LE + ++ E++ Q + E+ L+ Sbjct: 979 DMEIRGAGDMLGSRQSGTVIEIGFELYNQMLEETICRMRG------EEMIEQVEPEINLK 1032 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 +P+ +P+ ++ D RL YK++ A++E ++ +++ E+ DRFG P L + +LR Sbjct: 1033 VPAFIPETYVRDTGQRLVIYKKLTQAESEEDVLDVQNEVSDRFGKYPLATAYLFETMKLR 1092 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRL 1119 +KL +R+++ + K VI F + +P +I +++ +P+ YR RL Sbjct: 1093 IMLKKLLVRQIDYDGKDVVISFHPRTPASPDTIIAMMRNEPKRYRFTPDYRL 1144 >UniRef50_B6ISZ9 Transcription-repair coupling factor n=96 Tax=Alphaproteobacteria RepID=B6ISZ9_RHOCS Length = 1209 Score = 766 bits (1979), Expect = 0.0, Method: Compositional matrix adjust. Identities = 458/1132 (40%), Positives = 659/1132 (58%), Gaps = 41/1132 (3%) Query: 45 IAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDIISSRLSTLYQL---PT 100 +A D A RL + +S F + V+ W+ LPYD SP+ DI++ R+ L +L Sbjct: 45 VATDDARAARLAEAVSFFDPGIEVILFPAWDCLPYDRVSPNGDIVARRIDALTRLLEPAA 104 Query: 101 MQRGVLIVP-VNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEH 159 R +L+V VN + +V P + + G R++ L+ L + GY V E Sbjct: 105 KDRALLLVTTVNAALHKVPPRLAFRNASFRARVGDRINLPELQRFLANNGYTKAQTVREP 164 Query: 160 GEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT 219 GE+A RG ++DLFP G+ P RLD F D++D +R FD +Q T E+ + L P E Sbjct: 165 GEFAVRGGIVDLFPPGTAEPLRLDLFGDDLDGVRAFDPMTQLTTEKRDGFVLKPMSEVFL 224 Query: 220 DKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN 279 D+ +I FR+ +R+ F + +Y+ VS G AG+E+W PLF S L LF Y P Sbjct: 225 DEMSISRFRTGYRELFGAVTGDDPLYEAVSAGRKYAGMEHWLPLFHSG-LETLFDYMPDA 283 Query: 280 TLLVNTGDLETSAER-------FQAD-TLARFENRGVDPMRPLLPPQSLWLRVDELFSEL 331 + ++ E +R F+A TL E + +P+ +PP L + L Sbjct: 284 PVTLDPHVEEARDQRLEQVRDFFEARRTLQEAEKKSGNPVYRPVPPGMTVLDAEGWDLHL 343 Query: 332 KNWPRVQLKTEHLPTKAANANL---GFQKLPDLAVQAQQKAP--LDALRKFLETF--DGP 384 P QL +N +L G +K D A Q D LR+ + DG Sbjct: 344 AVRPVAQLTPFAAAEAGSNPDLTDAGGRKGRDFADARVQSGVNVYDVLREHVGALLADGR 403 Query: 385 -VVFSVESEGRREALGELLA-----RIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTV 438 VV + S G R+ L +L R+K A + ++ L++ A +HGF T Sbjct: 404 RVVVAGYSTGARDRLRSVLKEHGIERVK-AVESWAEVEGLPRTTTALVVLALDHGF--TA 460 Query: 439 RNLALICESDLLGERVARRR-QDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMT 497 LA+I E D+LG+R+ R + RR N I + L+ G VVH++HG+GRY G+ Sbjct: 461 PGLAVITEQDILGDRLVRAGGRKKRRAAN---FIAEASGLNPGDLVVHIDHGIGRYDGLE 517 Query: 498 TLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP-LHKLGGDAWSRARQK 556 TL+ GG + L L Y KLYVPV ++ ++SRY G+E++A L +LGG W + + Sbjct: 518 TLDVGGAPHDCLRLVYEGGDKLYVPVENIEVLSRY--GSEDSAGQLDRLGGAGWQSRKAR 575 Query: 557 AAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDM 616 ++++D+AA LL I A+RA + + FC FP+ T DQ AI VL D+ Sbjct: 576 VKKRLKDMAAALLRIAAERALRTAPPVAVPDGAWDEFCARFPYAETDDQLHAIEDVLGDL 635 Query: 617 CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANW 676 MDRLVCGDVGFGKTEVA+RAAFLAV N QVAV+VPTTLLA+QHY F RFA Sbjct: 636 SSGRPMDRLVCGDVGFGKTEVALRAAFLAVMNGMQVAVVVPTTLLARQHYRTFEQRFAGL 695 Query: 677 PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGV 736 PVR+ +SR +AKE Q A +A+G +DI++GTH LL V FK LG++IVDEE FGV Sbjct: 696 PVRLGQLSRLATAKETAQTKAGLADGTVDIVVGTHALLSKSVDFKRLGMVIVDEEQHFGV 755 Query: 737 RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSM 796 + KER+K +RA++ +LTLTATPIPRTL +A+SG+R+LS+IATPP RLAV+TFV YD + Sbjct: 756 KQKERLKELRADIHVLTLTATPIPRTLQLALSGVRELSLIATPPVDRLAVRTFVLPYDPV 815 Query: 797 VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND 856 V+REAILRE RGGQ +Y+ +E++++ +L ELVPE ++ + HGQM +LE VM Sbjct: 816 VIREAILREHYRGGQSFYVCPRIEDLERVRLQLEELVPEVKVVVAHGQMPASQLEEVMTA 875 Query: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 F +++VL+ T IIE+G+DIP+ANT+++ RAD FGLAQL+Q+RGRVGR+ + YA+L Sbjct: 876 FDEHKYDVLLATNIIESGLDIPSANTLVVHRADLFGLAQLYQVRGRVGRAKVRGYAYLTY 935 Query: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYM 976 ++ AQ+RL I +L+ LGAGF LA+HD++IRGAG LLGEEQSG + +G LY Sbjct: 936 QPRTVLSATAQQRLHVIETLDSLGAGFQLASHDMDIRGAGNLLGEEQSGHIREVGVELYQ 995 Query: 977 ELLENAVDALKAGR--EPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK 1034 ++LE AV ++GR E + ED S Q + L MP L+P+ ++PD+N RL+ Y+R++ Sbjct: 996 QMLEEAVADARSGRGAEQAAEDSWSPQ--INLGMPVLIPESYVPDLNVRLTLYRRVSDLT 1053 Query: 1035 TENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH 1094 E++ ELIDRFG LP+ LL + +++ ++ G+ L+ KG V+ F + Sbjct: 1054 DRQEIDAFAAELIDRFGPLPEEVDNLLRLVEIKRLCKEAGVANLDAGPKGAVVGFRNNSF 1113 Query: 1095 VNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENA 1146 NPA L+ +QKQ +L +L ++ ++R+ VRQ M L + A Sbjct: 1114 RNPARLVDFMQKQAGTAKLRPDHKLVLLRPWDSPESRMAGVRQLMLSLAQMA 1165 >UniRef50_D2LDK6 Transcription-repair coupling factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LDK6_RHOVA Length = 1249 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/1147 (38%), Positives = 661/1147 (57%), Gaps = 44/1147 (3%) Query: 28 ATLVAEIAERHAG------PVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDS 80 A L+A IA R V+ +A D Q L ++ F V++ W+ +PYD Sbjct: 40 AFLIAAIARRLPADTAFQQAVLHVARDDQRLAELKSQLEFFAPGADVLSFPAWDCVPYDR 99 Query: 81 FSPHQDIISSRLSTLYQLPTMQRG----VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 SP DI + R++TL +L + G +++ VN +QRV P + + A + G R+ Sbjct: 100 VSPDSDIEARRIATLARLAHAKGGKPAIIVLTTVNAALQRVPPLAAMKKSAARLAAGGRV 159 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 S + + +L+ +G+ VME GEYA RG +LDL+ G P RLDFF D ++++R FD Sbjct: 160 SMEQVIVRLEGSGFMRTGTVMEPGEYAVRGGILDLYVPGHARPARLDFFGDTLETIRTFD 219 Query: 197 VDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAG 256 +QRT + + LLP E P+ AA+++FR ++ + F + + +Y+ VS GT G Sbjct: 220 PVTQRTQATRDGVTLLPISEIPSGDAAVKMFRQRYVELFGPGKGDDALYEAVSAGTRYPG 279 Query: 257 IEYWQPLFFSEPLPPLFSYFP-ANTLLVNTGD------LETSAERFQADTLARFENR--G 307 +E+W PLF+ + + LF Y P A L + D LET A+ ++A E R G Sbjct: 280 VEHWLPLFY-DGMDSLFDYLPNAVVTLDHLADDAAARRLETIADHYEARREG-LEQRSFG 337 Query: 308 VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQ 367 P +PL P++L+L +E ++L + + P A + F+ + ++ Sbjct: 338 APPYKPL-KPEALYLAAEEWDAKLGERKVRRFEPFPQPDAKAVVQIDFKGKQGRSFALER 396 Query: 368 KAPLDALR-------KFLETFDGPVVFSVESEGRREALGELLA----RI-KIAPQRIMRL 415 D L + +++ V + + G RE LG +L+ RI K+A I + Sbjct: 397 SESSDKLIPAVADHIRVMQSLGKRAVIACWTNGARERLGNMLSTHISRIEKVA--NIAEV 454 Query: 416 DEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLA 475 +A + E G+ +LA+I E D+LG+R+ RRR+ + + D L+ + Sbjct: 455 RKADKSAVSFALLGIESGY--ETPDLAIIAEQDILGDRLIRRRKAKKAS---DVLV-EAS 508 Query: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGG 535 L G +VH +HG+GR+ G+ T++A G + + L YA KL++P+ ++ L++RY G Sbjct: 509 SLTPGDLMVHADHGIGRFIGLKTIDAAGAPHDCVELEYAGGDKLFLPIENMELLTRY-GS 567 Query: 536 AEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCD 595 E A L KLGG +W + K +++R +A EL+ + A R K + Y F Sbjct: 568 DEGTAQLDKLGGASWQGRKAKLKKRIRAMAEELIKVAALREMKPAPVLQVSDGAYNEFVT 627 Query: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655 FP+E T DQ +I AV D+ + MDRLVCGDVGFGKTEVA+RAAF+AV KQVAV+ Sbjct: 628 RFPYEETDDQLASIEAVADDLAKGRPMDRLVCGDVGFGKTEVALRAAFIAVMEGKQVAVV 687 Query: 656 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 715 VPTTLLA+QHY F +RF +PV++ SR + KE T + G++DI++GTH LL Sbjct: 688 VPTTLLARQHYQTFVNRFQGFPVKVAQASRLVTPKEMTLTREGLKAGQVDIVVGTHALLA 747 Query: 716 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 775 + FKDLGLLIVDEE FGV HKER+K +R V +LTLTATPIPRTL +A++G+R++S+ Sbjct: 748 KSIGFKDLGLLIVDEEQHFGVAHKERLKNLREEVHVLTLTATPIPRTLQLALTGVREMSV 807 Query: 776 IATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE 835 IATPP RLAV+TF+ +D + +REA+LRE RGGQ +Y+ + ++ + A L E VPE Sbjct: 808 IATPPVDRLAVRTFITPFDPVTLREALLRERYRGGQSFYVVPRISDLDEVATFLREQVPE 867 Query: 836 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 895 R HGQM +LE +M+ F+ + F+VL+ TTI+E+G+DIP ANT+I+ RAD FGLAQ Sbjct: 868 IRFMQAHGQMAPTQLEDIMSAFYDKEFDVLLSTTIVESGLDIPNANTLIVHRADMFGLAQ 927 Query: 896 LHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGA 955 L+QLRGRVGRS +AYA P +T A+KRL+ + SL+ LGAGF LA+HDL++RGA Sbjct: 928 LYQLRGRVGRSKTRAYAMFTIPPNGKITPQAEKRLKVLHSLDSLGAGFTLASHDLDLRGA 987 Query: 956 GELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDD 1015 G LLG+EQSG ++ +G+ LY +LE AV ALKA E+ + + +P L+P+ Sbjct: 988 GNLLGDEQSGHIKEVGYELYQSMLEEAVAALKANGGEEREEEEQWSPTINVGLPVLIPEV 1047 Query: 1016 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 ++PD+ RL Y+R++ +LE EL DRFG PD + LL + +++ +K GI Sbjct: 1048 YVPDLQVRLGLYRRLSGLHESADLENFAAELADRFGPPPDEVKHLLTVVQIKNYCRKAGI 1107 Query: 1076 RKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWV 1135 +++ KG VI F K NP L+ + + +L +L + ++ + R+ Sbjct: 1108 AQVDAGPKGAVITFRNKKFANPQGLVKFMYEHGVQVKLQIDQKLVYKEEWDDGVERLRGA 1167 Query: 1136 RQFMREL 1142 R +REL Sbjct: 1168 RALVREL 1174 >UniRef50_Q0F085 Transcription-repair coupling factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F085_9PROT Length = 1109 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/1115 (39%), Positives = 647/1115 (58%), Gaps = 52/1115 (4%) Query: 42 VVLIAPDMQNALRLHDEISQF---TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQL 98 V I PD+++ +L +E++ F Q + + WE LPYD SPH I+ R +TL +L Sbjct: 30 TVWICPDLRSYRQLAEEVAFFLRDQPQCLWRMPAWEVLPYDRVSPHHGIVGERFATLARL 89 Query: 99 ---PTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQ 155 P Q G+L+ + +QR+ P + H +K G L AL+++L AG D+ Sbjct: 90 LNTPAPQ-GLLLTALPAWLQRIAPPEVVAAHVWQIKPGDMLDIAALKSRLAEAGMSPADR 148 Query: 156 VMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAH 215 V+ GE+A RG L D++P E P R+D F D+I+S+R FD +SQR+ E + A +P Sbjct: 149 VLAQGEFAARGGLFDVWPATEETPLRIDMFGDDIESIRRFDPESQRSGESLSAFTSVPVR 208 Query: 216 EFPTDKAAIELFRSQWRDTF-EVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFS 274 E D+ E F + +R F +++ P + V G GIE PL + L Sbjct: 209 EVILDQRGRECFAAAFRTRFPHLRKHP--MLSSVQAGRPHPGIEALLPLAYDN-TARLSD 265 Query: 275 YFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW 334 Y P ++ + D++ F +FE P + PQ L+ VD Sbjct: 266 YLPDGAVIYSVRDIDVRRSAFAEQVRGQFEMVR-SSTEPSISPQELYA-VD--------- 314 Query: 335 PRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLE---TFDGPVVFSVES 391 ++ E L AA + + P L A +K PL ALR L + Sbjct: 315 --TAIRAESL--SAARPAIRIEPAPSLIDYADKKQPLHALRDALTKQLNHGWKIELIAHG 370 Query: 392 EGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLG 451 G++E + E A L + IG + GF + L+ +LLG Sbjct: 371 LGQQERMLEACAE----------LSDTFAGAISSCIGYLDTGFALPQQKRLLLTGRELLG 420 Query: 452 ERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLML 511 +R+ R+R+ ++ D + +LAEL G PVVH +HGVGRY G+ T++ G +++ + Sbjct: 421 QRLPRKRRSGPAILHAD-IFSSLAELKPGDPVVHEDHGVGRYHGLETIDEDGDLADFIKI 479 Query: 512 TYANDAKLYVPVSSLHLISRYAGGAEENAP-LHKLGGDAWSRARQKAAEKVRDVAAELLD 570 YA+ A ++VPV L + RY G E+AP L+KLG + W R R++ + +A EL+D Sbjct: 480 EYADKAHVFVPVEELARLHRYTG---EDAPALNKLGSEKWKRTRERVKRDLLAMAHELID 536 Query: 571 IYAQR--AAKEGFAFKHDR-EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 I A R A++ + + Y+ F FPFE T DQAQAI+AVL+D+ MDR++C Sbjct: 537 IEAARTSASRPPCLLQGPLLDAYEEFAARFPFEETDDQAQAIDAVLTDLALDKPMDRVIC 596 Query: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 GDVGFGKTEVAMRAAF+ ++ +QVAVL PTT+LA QHY +F +RF +++ MISR + Sbjct: 597 GDVGFGKTEVAMRAAFVVAESGRQVAVLAPTTVLANQHYASFAERFIGTDLKVAMISRLQ 656 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 KE QI +A G I I++GTH+LL +F DLG++IVDEE RFGV+HK+++K++ A Sbjct: 657 GKKEVEQICRGLAGGDIRIIVGTHRLLSDTFEFADLGMVIVDEEQRFGVKHKQKLKSLHA 716 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL 807 +VD+LTLTATPIPRTL+ MSG+R +SII+TPPA R A++T V +D + REAI RE+ Sbjct: 717 SVDLLTLTATPIPRTLHQTMSGLRSVSIISTPPAEREAIRTMVSSFDPHIAREAIRRELY 776 Query: 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 RGGQVYYL+N V++I++ RL E VPEA I I HGQM EL+R M F+ R ++LVC Sbjct: 777 RGGQVYYLHNHVQSIERITARLREDVPEAEIGIAHGQMTPAELDRQMLAFYEGRLHILVC 836 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 TTIIE+G+D+ ANT+I+ERAD GL+QLHQ+RGRVGRSH QAYA+L TP +AMT DA+ Sbjct: 837 TTIIESGLDVANANTLIVERADLLGLSQLHQIRGRVGRSHRQAYAYLFTPDARAMTADAR 896 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK 987 +RL+AIA +LGAGF LA D+EIRGAG LLG EQSG ++ IG +Y+++L +AV A Sbjct: 897 ERLQAIAEHSELGAGFLLARQDMEIRGAGNLLGAEQSGRIDEIGLDMYLDMLSDAV-AEA 955 Query: 988 AGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELI 1047 G+ P Q ++ L + ++LP D++P RL+ Y+RIA A ++++ + E+ Sbjct: 956 RGKMPK----PKQPLDMHLGVNAILPPDYMPQAGERLNLYRRIARADDDSQITLLFEEMT 1011 Query: 1048 DRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQ 1107 DRFG +PD A+ L+ AR+R +AQ L + + G + F + + P L +QK+ Sbjct: 1012 DRFGHMPDEAKYCLENARIRWRAQALHLSGIRAGSLGLRLSFTASSPIEPTSLFMRVQKE 1071 Query: 1108 PQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 PQ +RL L + ++ R++ F+ EL Sbjct: 1072 PQRFRLTPDGNLTLLHSSENQRERLKECIAFLDEL 1106 >UniRef50_A5V6G5 Transcription-repair coupling factor n=2 Tax=Sphingomonadaceae RepID=A5V6G5_SPHWW Length = 1195 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 465/1163 (39%), Positives = 657/1163 (56%), Gaps = 77/1163 (6%) Query: 39 AGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDIISSRLSTLYQ 97 G +V +A D Q L D F ++ V+ W+ LPYD SP S RL+TL+ Sbjct: 46 GGRLVFVAADDQAMQSLADAARFFAPELTVLTFPAWDCLPYDRASPALRATSERLATLHA 105 Query: 98 LPTMQRGVLIVP--VNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQ 155 L RG ++V VN + QRV + + G+R+ RD L L + GY D Sbjct: 106 LQGKPRGPVLVATTVNAVTQRVLTPFRIRQLVARLAPGERVDRDRLAAMLQANGYIRTDT 165 Query: 156 VMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAH 215 V E GEYA RG+L+DLFP G RLDFF DEI+S+R FD QRT+ V+ LLPA Sbjct: 166 VTEQGEYAVRGSLVDLFPAGEPHALRLDFFGDEIESVRQFDATDQRTIGPVDGFTLLPAS 225 Query: 216 EFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSY 275 E D+ I+ FR ++R+ F + IYQ VS G AG+++W PLF E L LF + Sbjct: 226 EALLDEETIKRFRGRYRERFGASATGDPIYQAVSDGRRLAGMDHWLPLF-EERLETLFDH 284 Query: 276 F-PANTLLVNTGDLETSAERFQA--DTLA-RFENRGVDP--MRPLLPPQSLWLRVDELFS 329 P + +L G ++ + RF+A D A R R DP RPL P L+L DE + Sbjct: 285 LAPEDLILREAGSIKAAEARFEAIADYHANRVRARTTDPGSYRPL-EPGELYLAADEWRT 343 Query: 330 ELKNWPRVQLKTEHL-PTKAANANLGFQKLPDLAVQAQQKAPL-DALRKFLETFDGP--- 384 + + P + L T P A +LG D A + Q + DA+ + +E Sbjct: 344 AIADRP-IHLVTPFAEPESARVLDLGVDGARDFAPERTQGVNIYDAVIEHVEALGKAGKR 402 Query: 385 VVFSVESEGRREALGELLARIKIAPQRIMRLDEASD---------------RGRYL---- 425 VV + S G RE LL A + R D D RG L Sbjct: 403 VVLASYSTGSRERFAGLL-----AEHGLDRGDLVDDWQSAITLPLPLAGGGRGVGLPRKE 457 Query: 426 ---------------------MIGAA----EHGFVDTVRNLALICESDLLGERVARRRQD 460 M+ A +HGF T ++AL+ E D+LG+R+ RR+ Sbjct: 458 NDGAQAGGPPPPPPASGRGGNMVALAVLPLDHGF--TSGDIALLTEQDMLGDRLVRRQ-- 513 Query: 461 SRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLY 520 +R + D + LA L G VVH++HG+GRY G+T++ + + LTYA KLY Sbjct: 514 -KRKKSADAFLAELATLSPGDLVVHMDHGIGRYEGLTSIPVAKAPHDCVALTYAGGDKLY 572 Query: 521 VPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEG 580 VPV ++ ++SRY G E L KLGG AW + + E++R++A EL+ A+RA + Sbjct: 573 VPVENIDVLSRY-GAENEGVQLDKLGGVAWQARKARMKERIREIAGELIKTAAERALRPA 631 Query: 581 FAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMR 640 A + D Y F D FP++ T DQ +AI V+ D+ MDRLVCGDVGFGKTEVA+R Sbjct: 632 EAIEPD-SGYNEFVDRFPYQETEDQDRAIADVIEDLAAGKPMDRLVCGDVGFGKTEVALR 690 Query: 641 AAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA 700 AAF+A QVA++ PTTLLA+QHY NF +RF PV I +SR SA E + +A Sbjct: 691 AAFVAALGGMQVALICPTTLLARQHYRNFVERFHGMPVNIGHLSRLVSAGEAKRTKDGLA 750 Query: 701 EGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIP 760 +G IDI+IGTH LL + FK LGL+IVDEE RFGV HKER+KA++ +V +LTLTATPIP Sbjct: 751 DGSIDIVIGTHALLAKGIAFKRLGLVIVDEEQRFGVTHKERLKALKTDVHMLTLTATPIP 810 Query: 761 RTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVE 820 RTL MAMSG+R+LS+I TPP RLAV+T+V +D +V+REA+LRE RGGQ + + ++ Sbjct: 811 RTLQMAMSGLRELSVIQTPPVDRLAVRTYVAPWDGVVIREALLREHYRGGQSFLVTPRIK 870 Query: 821 NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880 ++ + L + VPE + HGQM E+E M+ F+ ++F++LV TTIIE+G+DIP+A Sbjct: 871 DLPDIEDYLRKEVPEVSYVVAHGQMAAGEVEERMSAFYDKKFDILVSTTIIESGLDIPSA 930 Query: 881 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLG 940 NT+I+ RAD FGLAQL+QLRGRVGRS +AYA+L T + +T A+KRL + +++ LG Sbjct: 931 NTLIVNRADRFGLAQLYQLRGRVGRSKTRAYAYLTTGD-RGLTETAEKRLHILQNIDTLG 989 Query: 941 AGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAV-DALKAGREPSLEDLTS 999 AGF +A+HDL+IRGAG LLG+EQSG ++ +GF LY +LE A+ DA G + + S Sbjct: 990 AGFQIASHDLDIRGAGNLLGDEQSGHIKEVGFELYQSMLEEAILDAKAGGLADTKRESFS 1049 Query: 1000 QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPART 1059 Q V+ P L+P+D++PD++ R+ Y+R+ +T E+E ELIDRFG LP + Sbjct: 1050 PQINVD--APILIPEDYVPDLDLRMGLYRRMNEVETRAEIEAFAAELIDRFGKLPAATQN 1107 Query: 1060 LLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRL 1119 LL + ++ +K + K++ +G ++ F + + L+ + + RL ++L Sbjct: 1108 LLTVIEIKLNCRKACVAKIDTGPRGALVTFHNDDFPDLPGLLAYVDRLKDSARLRPDSKL 1167 Query: 1120 KFIQDLSERKTRIEWVRQFMREL 1142 ++ E R+ Q R L Sbjct: 1168 VITRNWPEPSHRLNGALQLSRGL 1190 >UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Halothermothrix orenii H 168 RepID=B8D013_HALOH Length = 1170 Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/1166 (37%), Positives = 679/1166 (58%), Gaps = 53/1166 (4%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLH-DEISQFTDQMVMN 69 + G+ + + G A + I ++ V+++ D + R + D I ++ V+ Sbjct: 20 INQGQNLFIEGMPGNRFAFITGNILQKIDKTVLMVTYDTVHLNRYYEDLIRMMPEEKVLL 79 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQR-GVLIVPVNTLMQRVCPHSFLHGHAL 128 + E LP++ P + R+ L + T ++ VL+ L++++ P S + Sbjct: 80 YPESEVLPHEQIVPDLAETAQRIRVLQSVITDKKPAVLLTTATALLRKMIPVSTFKKYIF 139 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 ++ GQ + + +L +GY V+ V GE++ RG ++D+FP+ P+R++ F DE Sbjct: 140 SLQVGQEIDLNKFTEKLRISGYNRVEMVENPGEFSIRGGIIDIFPLSVNKPFRIELFGDE 199 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAHEFPTD----KAAIELFRSQWRDTFEV------- 237 ID++R F+ +QR+ +E + + PA E K AI +S + DT Sbjct: 200 IDTIREFEPATQRSRRSLEKVFISPAREIIVSPRQIKKAIPAIKSDFNDTINTLYENNYK 259 Query: 238 --------KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLE 289 KRD E + + + P G E + P ++ E L L Y P ++++ E Sbjct: 260 EEGDYLREKRD-ESLEKLAERDDFP-GSEQFLPYYYPE-LHTLIDYLPDDSVIF-FDQAE 315 Query: 290 TSAERFQA--DTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTK 347 + +R + D L + ++ L +L + L +LK++ V T Sbjct: 316 KTWQRIKGFIDELQETQATLLEQGSVLPTYHKNFLSREALLDKLKDFNFVYSST------ 369 Query: 348 AANANLGFQK-LPDLAVQAQQKAPL--------DALRKFLETFDGPVVF-SVESEGRREA 397 + N L + K ++ + P + +R+ ++T G VF ++ S + Sbjct: 370 SINEELSWVKDFEKVSFTTRSVEPYHGKLDLFAERVRELVDT--GYRVFVTLNSSNKARR 427 Query: 398 LGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARR 457 + L ++A R +E S +M G+ GF+ NLAL E ++LG +R Sbjct: 428 VVNYLKENEMAVA--FRREEFSRERIIVMPGSLSEGFIIDDINLALFTEKEVLGNPQKKR 485 Query: 458 RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDA 517 RQ I I ++ EL +G VVH HG+G+Y G+ TL G +YL+L YA + Sbjct: 486 RQ--LNDIENGVKISSIDELQVGDYVVHENHGIGKYLGVKTLAVQGQHKDYLVLKYAGED 543 Query: 518 KLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAA 577 KLYVP +L+ +Y G + L+KLGG+ W + +QK E V+++A LL++YA+R Sbjct: 544 KLYVPTDQFNLVQKYIGADNKPPKLYKLGGNDWKKVKQKVKESVKEMAIGLLELYAERET 603 Query: 578 KEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV 637 +G++F D + F ++FP+E TPDQ +AI V +DM MDRL+CGDVG+GKTEV Sbjct: 604 IKGYSFSDDTVWQKEFEEAFPYEETPDQLKAIEEVKNDMESATPMDRLLCGDVGYGKTEV 663 Query: 638 AMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILA 697 A+RAAF AV + KQ AVLVPTT+LAQQHY+ F +R N+P+ IEMISRF++ EQ ++L Sbjct: 664 AIRAAFKAVMDGKQTAVLVPTTILAQQHYNTFSERMKNYPINIEMISRFKTPAEQREVLK 723 Query: 698 EVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTAT 757 ++A G++DI+IGTH+LL DV F DLGLLI+DEE RFGV HKE+IK ++ NVD+LT+TAT Sbjct: 724 KLAAGEVDIIIGTHRLLSRDVVFNDLGLLIIDEEQRFGVSHKEKIKDLKRNVDVLTMTAT 783 Query: 758 PIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYN 817 PIPRTL+MA+ G+RD+S+I TPP R ++T++RE++ ++R+A+ +E+ R GQVY+++N Sbjct: 784 PIPRTLHMALVGVRDMSVIETPPENRYPIRTYIREFNKELIRDAVRKELGREGQVYFVHN 843 Query: 818 DVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 877 VE+IQ+ A + +LVPE R+A+ HGQM E +LER+M DF++ +++VLVCTTIIETG+DI Sbjct: 844 RVEDIQEQATMIKKLVPECRVAVAHGQMNEHKLERLMLDFYNHQYDVLVCTTIIETGLDI 903 Query: 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 P NTII+ RAD GLAQL+QLRGRVGRS+ AYA+LL + + A+KRL AI Sbjct: 904 PNVNTIIVNRADQMGLAQLYQLRGRVGRSNRIAYAYLLYEKDRVLPEVAEKRLRAIKEFT 963 Query: 938 DLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDL 997 +LG+GF +A DLEIRGAG LLG EQ G + ++GFSLY +LLE AV+ LK G+E +D Sbjct: 964 NLGSGFKIAMRDLEIRGAGNLLGPEQHGHIASVGFSLYCKLLEGAVEELK-GKE---KDK 1019 Query: 998 TSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPA 1057 + E+EL + + LPD++I D ++ YK+I + K E+E++ ELIDRFG P+P Sbjct: 1020 GITRVEIELDIDAYLPDEYITDSRQKIDIYKKIMALKDFEEVEDMIDELIDRFGDPPEPV 1079 Query: 1058 RTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPT 1117 LL I++L+ +A KLGI K+ N+K F + ++++ ++ ++ + ++ Sbjct: 1080 LNLLGISKLKVKASKLGIDKISRNKKFVEFRFMKPDYLDGDKVVKFVKNHSRKVKIKSGK 1139 Query: 1118 RLKFIQDLSERKTRIEWVRQFMRELE 1143 R LS +T I+ + + + EL+ Sbjct: 1140 RPVIAYRLSPGRTTIKRLEKILSELK 1165 >UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F915_ACIC5 Length = 1189 Score = 750 bits (1936), Expect = 0.0, Method: Compositional matrix adjust. Identities = 441/1139 (38%), Positives = 662/1139 (58%), Gaps = 47/1139 (4%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPD------MQNALRLH 56 EQ + L + G +R+ G LT A + + +A PVVL+ D M ALR Sbjct: 20 EQAQRHLSLSRGRRRVSG-LTSTARSLYIPLLARAAKVPVVLLVADNKAADAMHLALRAG 78 Query: 57 DEIS-QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 E++ + V+ L + LP+++ SPH ++ R +TL+++ T ++I PV Sbjct: 79 CELTGAIAAERVLKLPAHDVLPFENMSPHPEVQEQRATTLWKIATGDAAIVIAPVEAAAM 138 Query: 116 RVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175 ++ P F G A V+++G+ + D L T L S GY VD V G+Y RG +LD++ Sbjct: 139 KLFPAPFYGGLAQVLRRGEEIDVDMLLTHLASVGYEQVDVVEMPGQYTRRGGILDVYSPE 198 Query: 176 SELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDK---AAIELFRSQWR 232 ++ P R++FF DEI+++R FD +SQR+ ++ LLP E P + AA+ S R Sbjct: 199 ADRPVRMEFFGDEIETMRKFDPESQRSQSPLDEARLLPLTETPVTERLLAAVHARLSGAR 258 Query: 233 DTFEVKRDPEHIYQQVSKGTLPA--GIEYWQPLFFSEPLPPLFSYFPANTLLVNT-GDLE 289 FE + E + + V+ G + G E++ + + L FP L V G ++ Sbjct: 259 --FETNDEGEMVAEMVAAGGVSVFPGWEFFAGVAGANK--TLLDLFPRCVLFVEEPGMIK 314 Query: 290 TSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL----KTEHLP 345 ER+ R + + L+ P+ ++LR + L ++ K+ P + + + L Sbjct: 315 NQVERWWNKVEQRHDRSSIGT---LIRPEDIYLRPELLEAQRKSHPGLDIDQLGAVDVLE 371 Query: 346 TKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARI 405 + F P L A ++ ++ ++ + ++ + ++G E L LL Sbjct: 372 DDETLGEIAFSSRPTLRFHGSIPAFVEQIKNLMQQ-ETRMLLAAPNQGEVERLATLLREY 430 Query: 406 KIA---PQRIMR------LDEASDRGRYL-----MIGAAEHGFVDTVRNLALICESDLLG 451 ++ R+M DEAS G L + G NL + +DL Sbjct: 431 ELPYRLGSRVMHTGSETMYDEASHLGGDLRTPIILRAPIATGVSLPDANLVVFGANDLND 490 Query: 452 ERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLML 511 E R +R++ I + +L +G VVH+EHG+ RY G+ + G T E+++L Sbjct: 491 EADVTARPAARKS-KTAAFISDFRDLAVGDYVVHVEHGIARYLGLKEIAQDGTTLEFMIL 549 Query: 512 TYANDAKLYVPVSSLHLISRYAGGAEENAP-LHKLGGDAWSRARQKAAEKVRDVAAELLD 570 +A +AKLYVP++ L LI +Y AP LH+LG W++ + + + ++D+A ELL Sbjct: 550 EFAEEAKLYVPLTRLDLIQKYRSTESGPAPVLHRLGTQQWAKTKARVKKAMQDMADELLK 609 Query: 571 IYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDV 630 +YAQR A +G A+ D E + F DSF + T DQ AI + DM MDRL+CGDV Sbjct: 610 LYAQRKAAQGHAYSADNEFQREFEDSFDYNETDDQLSAIADIKRDMESTTPMDRLLCGDV 669 Query: 631 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAK 690 G+GKTEVAMRAAF AV + KQVAVL PTT+L+ QHY+ F+ RF +P+ IEM+SRFR+AK Sbjct: 670 GYGKTEVAMRAAFKAVQDGKQVAVLTPTTVLSFQHYETFKKRFRQFPIHIEMLSRFRTAK 729 Query: 691 EQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVD 750 EQ I+ V G+IDILIGTH+LL D+KF D+GLLIVDEE RFGVRHKER+K +RA +D Sbjct: 730 EQKLIVERVEAGEIDILIGTHRLLSKDLKFHDIGLLIVDEEQRFGVRHKERLKQLRAQLD 789 Query: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGG 810 +LT++ATPIPRTL+M++ G+RD+S+I TPP R+A++T V ++D +VR A+ E+ RGG Sbjct: 790 VLTMSATPIPRTLHMSLVGLRDMSVIETPPKDRMAIQTIVAKFDEKLVRSAVEVELERGG 849 Query: 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 870 Q+Y+++N VE I + A ++ ELVP ARI +GHGQM E ELE+VM F + ++VLV T+I Sbjct: 850 QIYFVHNRVETIYEIAAKIQELVPHARITVGHGQMGEAELEKVMLAFMNHEYDVLVATSI 909 Query: 871 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRL 930 IE G+DIP ANTI+I RAD GL++L+QLRGRVGRS+ +AYA+L+ P + +T A++RL Sbjct: 910 IENGLDIPLANTILINRADRHGLSELYQLRGRVGRSNRRAYAYLMIPPEQELTEIARRRL 969 Query: 931 EAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGR 990 A+ DLGAGF +A DLE+RGAG +LG EQSG +E +GF LY +LE AV+ +K Sbjct: 970 AALKEFSDLGAGFKIAALDLELRGAGNMLGGEQSGHIEAVGFELYTTMLEEAVNKMKGQ- 1028 Query: 991 EPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRF 1050 E + T++ L +P + D +IP+ N RL YK IA A+ E + I+ EL+DR+ Sbjct: 1029 ----ETVERPVTQLSLGIPLRIDDSYIPEENQRLRMYKHIAGAQDERAIAGIRAELVDRY 1084 Query: 1051 GLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQ 1109 G LP R LLD A LR + +G+ +++ ++F EK ++P L+ L+ K + Sbjct: 1085 GALPTGVRHLLDAAELRIACEHMGVAQVDRKRDQIHLKFTEKASIDPGILMKLVSKNAK 1143 >UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Firmicutes RepID=B0TBA7_HELMI Length = 1247 Score = 741 bits (1913), Expect = 0.0, Method: Compositional matrix adjust. Identities = 424/1124 (37%), Positives = 665/1124 (59%), Gaps = 54/1124 (4%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNLADW 73 +Q + G L+ + L+A +A R P+ ++ +Q A R+ +++ D+ V++ Sbjct: 33 QQAVFG-LSASQRTALMATMARRLGHPLCVVTHSIQQARRIAEDLQVLLPDEEVLSFPAT 91 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKG 133 E +PY+ + ++++ RL L +L + ++ ++ LM+++ P + + L G Sbjct: 92 EVMPYEVLTSSHELLAQRLDVLSRLARREPVTVVTTIDALMKKLVPPAVMAEADLEFIVG 151 Query: 134 QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193 R+ ++ +L GY+ V G+Y+ RG +LD++P+ LP R++FFDDEIDS+R Sbjct: 152 CRMELSHIQERLHYLGYQRTPMVEAPGQYSLRGGILDVYPLTRSLPARIEFFDDEIDSIR 211 Query: 194 VFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP------------ 241 +FDV++QR+ E+ + PA E + R + R+ Sbjct: 212 LFDVETQRSKEKQDRYAAGPAREMLLAAETLAQGRRELEKEAATARERLLQSGCQEAAAR 271 Query: 242 -----EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAER 294 + +Q+ +G G+E +Q F+ + + LFSY T++ L+ SAE Sbjct: 272 LQAKIDSYLEQLDEGIWVEGLEQFQNFFYPDQVS-LFSYLHPETIVFWDEPTRLKESAEA 330 Query: 295 FQ---ADTLARFENRGVDPMRPLLPPQ-SLWLRVDELFSELKNWPRVQLKTEHLPTKAAN 350 + ++T G +LP Q +++ ++L EL + L L K Sbjct: 331 KEQEISETFVHLLEAG-----SVLPAQRNVYRHYNDLVEELAGHRVIHLAL--LAKKIER 383 Query: 351 ANLGFQKLPDLAVQAQQKAP----LDALRKFLETFDG---PVVFSVESEGRREALGELLA 403 + + A+ P LD L + L+ + V+ S RR+ + + L Sbjct: 384 VTVE----DTIQFNAKNMHPFLGKLDMLAEELKNYKKRRMAVLILAASTVRRDRICDALR 439 Query: 404 RIKIAPQRIMRLDEASDRGRYLM-IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR 462 + Q + +D G + +G E GF L LI + ++ G +R + R Sbjct: 440 DYGVEAQPVPGIDAELHPGTVAVGVGQLEAGFELVQARLVLITDLEIFGRE--KRPRKPR 497 Query: 463 RTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVP 522 ++ I + +L +G VVH+ HG+GRY G+ LE GG+ +YL++ YA + +LYVP Sbjct: 498 KSAREGQRIDSFVDLALGDYVVHVNHGIGRYMGVEKLEVGGVHKDYLVIRYAGEDRLYVP 557 Query: 523 VSSLHLISRYAGGAEENAP-LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGF 581 +HLI +Y G AE AP L++LGG+ W + +QK + VR++A +LL +YA R +K G+ Sbjct: 558 TDQVHLIQKYVG-AEGVAPKLYRLGGNEWHKVKQKVKDSVRELAGDLLKLYAARESKPGY 616 Query: 582 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 641 A+ D + F ++FP+E TPDQA++I V +DM + AMDRL+CGDVG+GKTEVA+RA Sbjct: 617 AYSADTPWQKEFEEAFPYEETPDQARSIAEVKTDMEKAKAMDRLLCGDVGYGKTEVAIRA 676 Query: 642 AFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE 701 AF AV + KQVA+LVPTT+LAQQHY+ FR+RF+ +PVR++++SRFRS KEQ L + Sbjct: 677 AFKAVQDGKQVAILVPTTILAQQHYNTFRERFSGYPVRVDVLSRFRSPKEQKASLEGLKS 736 Query: 702 GKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPR 761 G++DI+IGTH+L+ +DV FKDLGLLI+DEE RFGV HKE+IK ++ NVD+LTL+ATPIPR Sbjct: 737 GEVDIVIGTHRLVSNDVSFKDLGLLIIDEEQRFGVAHKEKIKHLKENVDVLTLSATPIPR 796 Query: 762 TLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVEN 821 TL+M++ G+RD+SII TPP R V+T+V EY+ ++REA+ RE+ RGGQVYY+ N +E+ Sbjct: 797 TLHMSLVGLRDMSIIETPPEDRYPVQTYVVEYNPELIREAVRRELNRGGQVYYVRNRIED 856 Query: 822 IQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 + + A L LVP+ARI +GHG+MRE +LE+VM DF +++LVCTTIIETG+DIP N Sbjct: 857 LDRIARDLGALVPDARIVVGHGKMREDQLEQVMLDFLEGEYDILVCTTIIETGLDIPNVN 916 Query: 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGA 941 T+I++ AD GL+QL+QLRGRVGRS+ AYA+ K +T A+KRL AI +LG+ Sbjct: 917 TLIVDGADLMGLSQLYQLRGRVGRSNRLAYAFFTYRKDKVLTEVAEKRLHAIREFTELGS 976 Query: 942 GFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQ 1001 GF +A DLEIRG G LLG EQ G M ++GF LY LLE A+ LK G +P + + Sbjct: 977 GFKIAMRDLEIRGVGNLLGPEQHGQMASVGFDLYCRLLEEAIQELK-GAKPE----EAPE 1031 Query: 1002 TEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLL 1061 T V++R+ + +PD ++ D +++ FYKR+ +A+T +++E ++ E+ DRFG P+P L+ Sbjct: 1032 TFVDIRVDAFIPDGYMADSLSKVQFYKRLLAARTVDQVEALEEEMEDRFGDPPEPVENLV 1091 Query: 1062 DIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQ 1105 ++R++ Q+ G+ ++ ++ I F V + L+Q Sbjct: 1092 SLSRIKAYGQQAGVSAVQQEKEELRIRFFPHAKVEAKAVSALVQ 1135 >UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chloroflexus RepID=A9WHG9_CHLAA Length = 1185 Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 452/1101 (41%), Positives = 638/1101 (57%), Gaps = 102/1101 (9%) Query: 41 PVVLIAPDMQNALRLHDEISQF--TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQL 98 P + I ++ALR D++ Q+ +DQ+ + + LPY+ SP +D+++ RL+ L L Sbjct: 64 PTLYITLSAESALRAADDLRQWLGSDQVWL-FPPADALPYEQMSPGRDVLARRLAVLRGL 122 Query: 99 PTMQ-RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVM 157 T GV++ V LMQ P S L + +++G ++S + L GY+ V V Sbjct: 123 QTGSFSGVIVTSVKALMQPTLPPSDLANATIRLQRGMQVSIEETVVTLLDNGYQRVAMVE 182 Query: 158 EHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF 217 E GE + RGA+LD++P G ELP R+++FDDEIDSLR FD +QR+ + +E ++ P HE Sbjct: 183 EPGELSRRGAILDVWPPGDELPLRIEWFDDEIDSLRRFDPATQRSEQRLERADIGPPHEI 242 Query: 218 P----------TDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSE 267 P D + R + RD + V R +Q++ G G ++ P F+ + Sbjct: 243 PFWRRDEALRRIDALDMSQLRREVRDEWAVAR------EQLAGGQRFEGRAFYAPFFYDQ 296 Query: 268 PLPPLFSYFPANTLLV---------NTGDLETSAERFQADTLARFENRGVDPMRPLLPPQ 318 L Y P +++ + +++ A ++ LA E LPP Sbjct: 297 -TATLLDYLPPQSMVALAEGHLLAQHADEIDVQAAGYRDQLLALGE----------LPP- 344 Query: 319 SLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD-LAVQAQQKAPL--DALR 375 + W + LK K +L + PD L + PL LR Sbjct: 345 -------DFPRPYLRWSELHLKES---AKLVVVDLSHNEYPDALPPLSFGVPPLYGGQLR 394 Query: 376 KFLETF-----DGPVVFSVESEGRR--EALGELLARIKIAPQRIMRLDEASDRGRYLMI- 427 + ++T G +V +V ++ R E +GE LA+ ++ GR++ I Sbjct: 395 RLIDTVVEQVRGGELVVAVTAQAARLQELVGERLAQETVS-------------GRFVPIH 441 Query: 428 GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLE 487 G E GF +L L+ +S++ G R R + RR L L G VVH+E Sbjct: 442 GGLEAGFTLADLHLTLLTDSEIFGVRQRRPLAERRRKTGTTDRAAFLRTLKPGDYVVHIE 501 Query: 488 HGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGG 547 HG+ + GM + EYL+L YA + K+YVPV + ++RY G + L +LG Sbjct: 502 HGIAIFDGMIRRTVSEVEREYLVLRYAGEDKIYVPVDQIDRVTRYIGAGDGPPTLTRLGT 561 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607 W R ++K V+D+A ELL +YAQR K G+AF D E + SFP+ T DQ + Sbjct: 562 QDWERTKRKVRAAVQDLAEELLRLYAQRQLKSGYAFSPDNEWQRELEASFPYLETDDQLR 621 Query: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667 AI V +DM +P MDRLVCGDVGFGKTEVA+RAAF AV + KQVA+LVPTT+LAQQH+D Sbjct: 622 AIAEVKADMEKPTPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAILVPTTVLAQQHFD 681 Query: 668 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727 FR R A +PV +EM+SRFRS KEQ I+ ++A GKIDI+IGTH+LL +DV F++LGL+I Sbjct: 682 TFRKRMAAFPVTVEMLSRFRSPKEQDAIIRDLARGKIDIIIGTHRLLSNDVVFRNLGLVI 741 Query: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787 +DEE RFGVRHKER+K MR VD+LTLTATPIPRTL+MA++G+RDLS+I TPP R+ +K Sbjct: 742 IDEEQRFGVRHKERLKLMRTEVDVLTLTATPIPRTLHMALAGIRDLSVIDTPPEDRIPIK 801 Query: 788 TFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 847 T+V D +++E I RE+ R GQVY ++N V++I AERL LVPEARIA+GHGQ+ E Sbjct: 802 TYVVPTDDHLIQEVIRRELEREGQVYVVHNRVQSIYHVAERLRRLVPEARIAVGHGQLAE 861 Query: 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 RELE+VM DF R++VLVCTTIIE+G+D+P ANTIII+ A ++GLAQL+QLRGRVGR Sbjct: 862 RELEQVMIDFFEGRYDVLVCTTIIESGLDVPNANTIIIDDATNYGLAQLYQLRGRVGRGA 921 Query: 908 HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSM 967 +AYA+LL + MT DA+ RLEAI +LGAGF +A DLEIRGAG LLG EQSG + Sbjct: 922 TRAYAYLLYNAARVMTNDARLRLEAIQEATELGAGFRIAMRDLEIRGAGNLLGAEQSGHI 981 Query: 968 ETIGFSLYMELLENAVDALK----------------------AGREPSLED--LTSQQTE 1003 +GF LY LLE AV LK + R P++ + L + Sbjct: 982 AAVGFDLYSRLLEQAVRKLKQDVDELAETATDSSVTPAVMAESLRAPNVSERVLVAPLVT 1041 Query: 1004 VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRF-GLLPDPARTLLD 1062 ++L + + LP D+I D RL+ Y+R+ A T +E+ ++ ELIDRF G LP+P L+ Sbjct: 1042 IDLPLTAYLPPDYISDETVRLAVYQRMVDATTLDEVRGLRQELIDRFGGPLPEPVLHLIL 1101 Query: 1063 IARLRQQAQKLGIRKL--EGN 1081 ++R A + G+ + EG+ Sbjct: 1102 WLQIRLLALQAGVASITTEGD 1122 >UniRef50_B0U870 Transcription-repair coupling factor n=86 Tax=Alphaproteobacteria RepID=B0U870_METS4 Length = 1203 Score = 740 bits (1910), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1129 (37%), Positives = 647/1129 (57%), Gaps = 52/1129 (4%) Query: 39 AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQL 98 AG + +AP+++ V+++ W+ PYD SP+ I + R++ L +L Sbjct: 92 AGALAFVAPEIE----------------VLSIPAWDCQPYDRVSPNPAIAAERMTALSRL 135 Query: 99 PTMQRG-----VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHV 153 + V++ VN L+QRV + G + D + L++ G+ Sbjct: 136 ARTRSSEERPRVVVTTVNALVQRVPARDRIAVETFSAAVGNAVDTDKIVAWLEANGFLRT 195 Query: 154 DQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLP 213 V + GEYA RG ++DL P G P RLDFF D ++S+R FD ++QRT+ ++ +++L+P Sbjct: 196 GTVRDTGEYAVRGGIIDLSPPGLPNPVRLDFFGDTLESIRSFDPETQRTIGQLRSLDLVP 255 Query: 214 AHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273 E I FR + F + +Y+ VS+G AG+E+W PLF+ L LF Sbjct: 256 MSEVQLTTETIRRFRQGYVAAFGAATRDDRLYEAVSEGRRAAGLEHWMPLFYDR-LDTLF 314 Query: 274 SYFPANTLLVNTGDLETSAERF---QADTLARFE-----NRGVDPMRPLLPPQSLWLRVD 325 Y L+ + + + ER Q AR E GV P +PL +L+L Sbjct: 315 DYLAGVPLVFDKDVDDAAGERLGQVQEYHDARCEALKAPQPGVAPYKPL-GSDALYLSPA 373 Query: 326 ELFSELKNWPRVQLKTEHLPTKAANANLGFQKLP--DLAVQAQQKAP--LDALRKFLETF 381 E ++ +L +P + + P + A + Q+ DA + + Sbjct: 374 EWAKRVEGARVARLTPFAVPESPGRPIVDCEAEPARNFAPERAQEGVNVFDAAVQHVRAL 433 Query: 382 DGP---VVFSVESEGRREALGELLARIKI-APQRIMRLDE--ASDRGRYLMIG--AAEHG 433 G V+ + SEG R+ L +L + P+ + RL + A RG+ + + E G Sbjct: 434 QGSGHHVILAAWSEGSRDRLCGVLTDHGLPKPKTVTRLSDTLALKRGQDVAVAVWGLEAG 493 Query: 434 FVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRY 493 F T+ LA++ E D+LG+R+ R ++ ++R P +I + L G VVH +HG+GR+ Sbjct: 494 F--TIERLAVVAEGDILGDRLVRPKRKAKR---PQDVILEVQALSPGDLVVHADHGIGRF 548 Query: 494 AGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRA 553 G+ T+ A G + L + Y N L +PV ++ L++RY G E + PL KLGG AW Sbjct: 549 TGLKTVTAAGAPHDCLEIQY-NGGLLLLPVENIELLTRY-GSEEADVPLDKLGGGAWQAR 606 Query: 554 RQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVL 613 + K ++ ++A L+ + A+R + Y F FP+E T DQ AI A L Sbjct: 607 KAKLKRRILEMAGALIKVAAERFLRPAPKLVPPDGTYGEFAARFPYEETEDQEAAIAATL 666 Query: 614 SDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRF 673 D+ MDRL+CGDVGFGKTEVA+RAAF+A + +QVAV+VPTTLLA+QHY F +RF Sbjct: 667 GDLTAGRPMDRLICGDVGFGKTEVALRAAFVAAISGRQVAVVVPTTLLARQHYRTFAERF 726 Query: 674 ANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHR 733 PV + SRF S+ E ++ +A+G +DI++GTH LL + F+DLGL+I+DEE Sbjct: 727 KGLPVNVAQASRFVSSAELKRVREGLADGTVDIVVGTHALLAKTIGFRDLGLIIIDEEQH 786 Query: 734 FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREY 793 FGV HKER+KA+RA V +LTL+ATPIPRTL +AM+G+R+LSIIATPP RLAV+TFV + Sbjct: 787 FGVAHKERLKALRAEVHVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLAVRTFVTPF 846 Query: 794 DSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERV 853 D ++VREA+LRE RGGQ +Y+ +E++ + L +PEA++ I HGQM +LE V Sbjct: 847 DPLLVREALLRERYRGGQAFYVVPRIEHLDEVKRFLDREMPEAKVGIAHGQMPAGQLEDV 906 Query: 854 MNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 913 M F+ +F++L+ TTI+E+G+DIPTANT+I+ RAD FGLAQL+QLRGRVGRS +AYA Sbjct: 907 MTAFYEGKFDILLSTTIVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSKARAYAL 966 Query: 914 LLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFS 973 TP KA+T A++RL+ + SL+ LGAGF LA+HDL+IRGAG LLG+EQSG ++ +G+ Sbjct: 967 FTTPEGKALTVQAERRLKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYE 1026 Query: 974 LYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASA 1033 LY ++LE+AV ALK G+ ++ S + L P +P++++ D++ RL Y+R+A+ Sbjct: 1027 LYQQMLEDAVAALKEGKAVPADEQWSPT--IALGAPVTMPEEYVSDLSVRLGLYRRLATL 1084 Query: 1034 KTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKN 1093 ++ ELE ELIDRFG LP LL I ++ ++ + K+E KG V F ++ Sbjct: 1085 DSDAELESFGAELIDRFGPLPPEVEQLLKIVTIKILCRETNVEKVEAGPKGIVFHFRDRA 1144 Query: 1094 HVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 NPA L + +Q ++ + FI++L R++ +R+L Sbjct: 1145 FANPARLAAYIAEQRSFAKVRPDMSVVFIRNLDTVAERLKETTAILRDL 1193 >UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Roseiflexus RepID=A5UZG2_ROSS1 Length = 1265 Score = 730 bits (1885), Expect = 0.0, Method: Compositional matrix adjust. Identities = 479/1180 (40%), Positives = 647/1180 (54%), Gaps = 96/1180 (8%) Query: 8 TLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF--TDQ 65 TL G + + GAA LVA + P++ + ALR H+++ Q+ TD+ Sbjct: 25 TLHAHRGARLHIAPTPGAARTPLVAAFTLQGVAPLLYLVGTTDAALRAHEDLRQWIGTDR 84 Query: 66 MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG-------VLIVPVNTLMQRVC 118 + + A + LPY+ S DI+++RL L++L G V++ PV LMQ Sbjct: 85 VFLFPAS-DALPYEHMSTGADILTARLRVLHRLAAFNAGDVDVAPFVIVAPVKALMQPSL 143 Query: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL 178 L ++ +++G + D L +L + GYR+ V E GE RG ++D+F G +L Sbjct: 144 TPDELRDASVRLERGMAYALDDLIERLIAMGYRYAPTVEEPGEVNRRGGIIDVFSPGDDL 203 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK 238 P R++FF DEIDSLR FD +QR+ ++ A + P HEFP + + L R + DT ++ Sbjct: 204 PLRIEFFGDEIDSLRRFDPLTQRSEAQIRAAIIGPPHEFPLWRRDVALERMRAIDTSMLR 263 Query: 239 RDPE----HIYQQVSKGTLPAGIEYWQPLFFSEPLPP--LFSYFPANTLLVNTGDLETSA 292 + + + G G + P F P P L + P +V + L + Sbjct: 264 HEALDEWLQAFDHIRNGERFEGRALFAPFFRDNPQAPGTLLHHLPPGAPVVLSEALLLAQ 323 Query: 293 ERFQADTLARFENRG-VDPMR-PLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAAN 350 + D A R +D P P+ +LR EL + + V L P Sbjct: 324 HATELDQQAETRRRQQIDAGELPAAFPRP-YLRWHELMALAEAHTLVNLSNNEHPFWDVL 382 Query: 351 ANLGFQKLPDLAVQAQQ--KAPL----------DALRKFL---------ETFDGPVVFSV 389 + P + Q APL D R L E F G + V Sbjct: 383 LSDPAPLPPSFSFGEQNGNPAPLTDTRNVHPSEDRFRVHLLPERLFAPAELFGGQIRRLV 442 Query: 390 ESEGRREALGELLARIKIAPQRIMRL------DEASD------RGRYLMIGAAEHGFVDT 437 + R GE + I R+ L +ASD G ++ G + GF Sbjct: 443 DDVVERLRAGERVVLITPQAARLQELVTEALQRDASDGVENVVSGLTVLHGTLDEGFRMP 502 Query: 438 VRNLALICESDLLGERVARRRQDSRRTINPDTLIRN--LAELHIGQPVVHLEHGVGRYAG 495 NL L ++++ G R R D RR + R L L G VVH+EHG+ Y G Sbjct: 503 ALNLTLYSDTEIFGWRQRRIIADRRRRHDRRAEDRAAFLRGLKPGDYVVHIEHGIAVYEG 562 Query: 496 MTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQ 555 + GGI +YL L YA +LYVPV + +SRY G + L +LG W RA++ Sbjct: 563 LIRRSVGGIERDYLNLRYAEGDRLYVPVDQIDRVSRYIGAGDVEPQLTRLGTQDWERAKR 622 Query: 556 KAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSD 615 KA V+D+A EL+ +YAQR EG AF D E + SFP+ TPDQ +AI V D Sbjct: 623 KARAAVQDLAEELITLYAQRQLAEGHAFSPDTEWQRELEASFPYVETPDQLKAIIDVKRD 682 Query: 616 MCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 M QP MDRLVCGDVGFGKTEVA+RAAF AV + KQVAVL PTT+L QQHYD F R A Sbjct: 683 MEQPQPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAVLAPTTVLVQQHYDTFSRRMAA 742 Query: 676 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFG 735 +PVRI+MISRFRSAKEQ++I+ +A G+IDI+IGTH+LL DV FKDLGLL++DEE RFG Sbjct: 743 FPVRIDMISRFRSAKEQSEIVQRLARGEIDIIIGTHRLLSKDVVFKDLGLLVIDEEQRFG 802 Query: 736 VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDS 795 VRHKERIK +R NVD+LTLTATPIPRTL+MA++G+RDLSII TPP R+ +KT+V YD Sbjct: 803 VRHKERIKQLRTNVDVLTLTATPIPRTLHMALAGIRDLSIIDTPPEDRIPIKTYVLPYDE 862 Query: 796 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMN 855 ++REAILRE+ RGGQVY+++N V++I A+RL LVPEARIA+GHGQ+ E +LERVM Sbjct: 863 RLIREAILRELDRGGQVYFVHNRVQSIYYVADRLRRLVPEARIAVGHGQLEEHQLERVML 922 Query: 856 DFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLL 915 DF R +VLVCTTIIE+G+D+P ANTIII+ A +FGLAQL+QLRGRVGRS +AYA+L Sbjct: 923 DFFTGRDDVLVCTTIIESGLDVPNANTIIIDDATNFGLAQLYQLRGRVGRSTQRAYAYLF 982 Query: 916 TPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLY 975 + T +AQ+RL AI +LGAGF +A DLEIRGAG LLG EQSG + +GF LY Sbjct: 983 YKSERPSTPEAQERLRAIQEATELGAGFRIAMRDLEIRGAGNLLGAEQSGHIAAVGFDLY 1042 Query: 976 MELLENAVDALK--------------------------------------AGREPSL--- 994 LLE AV LK R P++ Sbjct: 1043 SRLLEQAVRTLKQRLIATNFITGTDAMRTSPGAPAQPSDGQTPPPARSSVPSRRPAVRVD 1102 Query: 995 -EDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLL 1053 + L S ++L + + LP D+IPD RL+ Y+R+A A+T + +++ EL DRFG L Sbjct: 1103 EKVLISPLVTLDLPLDAYLPVDYIPDDRVRLAVYQRMAEAQTPEAVRDLRQELRDRFGEL 1162 Query: 1054 PDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKN 1093 P+PA LL R++ A G+ + + +I E N Sbjct: 1163 PEPADQLLIWLRIKALALAAGVTSVVTTDAEFIIRLPEGN 1202 >UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMB9_MOOTA Length = 1183 Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust. Identities = 438/1136 (38%), Positives = 645/1136 (56%), Gaps = 90/1136 (7%) Query: 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF-TDQMVMNLA 71 AGE +L G G L A + E + P++++ P + A RL +I F + + L Sbjct: 27 AGEVQLYGLPEGMKGLWLAAMLDEFN--PILVVTPGSEEAQRLAADIESFWPGEGIDYLP 84 Query: 72 DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 E LP + ++P ++ + RL L L + + +L+VPV L++++ P L ++ Sbjct: 85 PSELLPLEVYTPSPELAAQRLKVLTNLVSGRTRILVVPVEDLLRKLPPPDTLRHSLQSLE 144 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 GQ + R+AL +L GYR + V G+ A RG ++D+FP+G+E P RL+ F DEIDS Sbjct: 145 VGQIIDREALLQKLTGLGYRREEVVEAPGQLAVRGGIIDIFPLGAEEPVRLELFGDEIDS 204 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEF---PTDKAAIELFRSQWRDTF------------E 236 LR FD SQR++ ++ AI + PA E P +E ++++ T+ E Sbjct: 205 LRRFDPVSQRSVADLRAIVVGPAQEVLPPPDLGPGLETLKAEFSQTYATLRQRQPQAARE 264 Query: 237 VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAER 294 +K + + + G+ P G QP F+ LF YF LLV + L R Sbjct: 265 LKDRVQELIAMLEAGSWPGGSSQLQPFFYPRQ-ATLFEYFQRQPLLVLDDPARLLEEMRR 323 Query: 295 FQADTLARFENRGVDPMRPLLPPQS-----------LWLRVDELFSELKNWPRVQLKTEH 343 + L F + + LP Q LW R L+ L Sbjct: 324 REQQRLGIFTDMLAAGL--ALPSQGQAYLDSADLERLWQRYQRLYFSL------------ 369 Query: 344 LPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLA 403 LP + +N P + + AQ + F G + VE R G + Sbjct: 370 LPRRVPGSN----PRPAVGISAQT----------IPAFQGKLGLVVEELTRWRREGYRII 415 Query: 404 RIKIAPQRIMRL--------------DEASD---RGRYLMI-GAAEHGFVDTVRNLALIC 445 + P R++ L EA D RG +M+ G GF LA+I Sbjct: 416 LMVADPNRVVALRQALAEQGIEALTHPEARDTLGRGEVIMVSGRLRQGFTWPEMRLAIIG 475 Query: 446 ESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGIT 505 ++++ G RR +T + I + +L G VVH+ HG+GRY G+ L+ GG+ Sbjct: 476 DTEIYG---PIRRPRRVKTPREGSKISSFTDLKEGDYVVHVHHGIGRYLGLQQLDVGGVK 532 Query: 506 GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVA 565 +YL++ YA +LYVPV + L+ +Y GG L++LGG+ W++ + + E V+++A Sbjct: 533 KDYLLIQYAGKDRLYVPVDQVSLVQKYVGGEGHVPRLYRLGGNEWNKVKSRVQEAVQEMA 592 Query: 566 AELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRL 625 ELLD+YA+R A G AF D + F ++FP+ TPDQ +AI V +DM +P MDRL Sbjct: 593 QELLDLYARREAIPGHAFGPDTPWQREFEEAFPYTETPDQLRAIAEVKADMEKPRPMDRL 652 Query: 626 VCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISR 685 +CGDVG+GKTEVAMRAAF AV + QVAVLVPTT+LAQQHY+ F+ RFA +PV+I ++SR Sbjct: 653 LCGDVGYGKTEVAMRAAFKAVMDGMQVAVLVPTTILAQQHYETFKARFAPFPVKIAVLSR 712 Query: 686 FRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAM 745 F S +EQ ++ + G++DI+IGTH+LL SDV FK+LGL+I+DEE RFGV HKE++K + Sbjct: 713 FCSPREQKVVVEALKRGEVDIVIGTHRLLSSDVNFKNLGLVIIDEEQRFGVAHKEKLKQL 772 Query: 746 RANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILRE 805 R +VD+LT+TATPIPRTL+M+++G+RD+S+I TPP R V+T+V EY+ +VREAI RE Sbjct: 773 RYSVDVLTMTATPIPRTLHMSLAGVRDMSMIETPPEDRFPVQTYVVEYNPELVREAIRRE 832 Query: 806 ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 865 + RGGQV+ ++N V++I + A + +LVPEAR+ IGHGQM E ELE VM DF R++VL Sbjct: 833 LDRGGQVFIVHNRVQDIDRFAYHIQQLVPEARVGIGHGQMGEEELENVMLDFISGRYDVL 892 Query: 866 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTD 925 V TTI+E G+DI ANT+I++ +D+FGLAQL+QLRGRVGR++ AYA+ K + Sbjct: 893 VSTTIVENGLDIQNANTLIVDESDNFGLAQLYQLRGRVGRTNRLAYAYFTYRPDKVLGEI 952 Query: 926 AQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDA 985 A+KRL AI G+G+ +A DL+IRGAG LG EQ G M +GF LY +LLE AV Sbjct: 953 AEKRLAAIREFTAFGSGYKIALRDLQIRGAGNFLGPEQHGHMVAVGFDLYCQLLEEAVRK 1012 Query: 986 LKAGR-----EPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELE 1040 LK R P+L + Q T +EL + + L D++IP+ ++ Y R+ +A +E Sbjct: 1013 LKEQRGEGVPRPALAE--PQATPIELSVDTFLGDNYIPEATLKMELYHRLMNAGDLAAVE 1070 Query: 1041 EIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVN 1096 +I E+ DR+G P AR LL + R+R A+++G+ + N+K +E + H Sbjct: 1071 DIAAEMEDRYGPPPPEARNLLALTRVRILAREVGV--ISVNQKNREVELSFGQHTG 1124 >UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ97_DESAH Length = 1165 Score = 725 bits (1871), Expect = 0.0, Method: Compositional matrix adjust. Identities = 409/1106 (36%), Positives = 648/1106 (58%), Gaps = 38/1106 (3%) Query: 24 GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF---TDQMVMNLADWETLPYDS 80 G+ A + A++ + +V++ PD + A+ DE+ + + V+ + LP+ + Sbjct: 23 GSGSAYITAKLFASNDCSLVVVLPDRKRAMAFMDELEFYLPKGKRRVIYFPGYNILPFKA 82 Query: 81 FSPHQDIISSRLSTLYQLPTMQRGVLIVP-VNTLMQRVCPHSFLHGHALVMKKGQRLSRD 139 S H + S R++ LY+L + + LIV V+TL+ ++ P L A ++ + + RD Sbjct: 83 LSFHSETASKRIAALYKLLSRREHHLIVTHVDTLLLKMIPRKRLADAADLVINNEEIDRD 142 Query: 140 ALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDS 199 L +L++ GY V E G+Y+ RG +LD+F + P R++ F D ++SLR F + Sbjct: 143 LLVARLNAGGYIRTSLVEEPGDYSVRGGILDVFSPSATFPVRIELFGDYVESLRFFSPIT 202 Query: 200 QRTLEEVEAINLLPAHEFPTDKAAI-ELFRSQWRDTFEVKRDPEHIYQQVSK----GTLP 254 QR +++++ I ++PA+E D A + E+ + + DP I V K G P Sbjct: 203 QRGIKDIQEIEIVPANEAVIDPAELPEILGRLRKAGADAGVDPVVIRGHVDKIREEGRFP 262 Query: 255 AGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQADTLARFENRGVDPMR 312 G+E + + E L Y P + L + N D+E A F+ + + + R Sbjct: 263 -GMEGMLSIVYPE-LDSFMDYVPDHALFLLENPLDIEAGATAFEQKARQNYTS-ALAENR 319 Query: 313 PLLPPQSL---WLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKA 369 + P+SL W +V E K +L + T +A + L+ + + Sbjct: 320 LSVTPESLYIEWSQVKSRLFEKKPVCFKRLTMDRRETDSAAFSFDISDNTFLSSTLKGEG 379 Query: 370 PLDALRKFLETF------DGPVVFSV-ESEGRREALGELLARIKIAPQRIMRLDEASDR- 421 +AL + L + DG +V S + + L +L + P + +E ++ Sbjct: 380 KTEALFQPLADWFLDKKNDGSRAVAVCSSTTQSQRLVAILRPYGVEPTFLKGFEEVENQK 439 Query: 422 -GRYLMIGAAE----HGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAE 476 G Y + G A GFV + +AL+ ++ G A+RR+ + T + E Sbjct: 440 PGIYCIPGYASGNLTRGFVFPEQGIALVTNQEIFG---AKRRRSAGGTKRAKSQFITPEE 496 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 L G VVHLEHG+GRY G+ TL+ GI+G+++++++ +D +LY+PV + ++ +Y G Sbjct: 497 LKEGDIVVHLEHGLGRYEGLVTLKLEGISGDFILISFRDDDRLYLPVDRMEMVEKYIGVD 556 Query: 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596 + L K+GG W ++R KA ++V +A ELL +YA+R +GFAF + F S Sbjct: 557 GYSPILDKIGGKTWQKSRAKAKKEVEKMAGELLKLYAERRVAKGFAFSRPDHFFNDFEAS 616 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 FPFE TPDQ +AI+ VL DM MDRLVCGDVG+GKTEVA+RA F AV + KQVA++V Sbjct: 617 FPFEETPDQLKAIDDVLVDMESERPMDRLVCGDVGYGKTEVAIRATFKAVTDGKQVAIVV 676 Query: 657 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS 716 PTT+LA+QH FR+RF N+P+ +E +SRFR+ EQ +I+ ++ +GK+D++IGTH+LLQ Sbjct: 677 PTTILAEQHVHTFRERFGNYPITVESLSRFRTKGEQAKIVKDLEQGKLDVVIGTHRLLQK 736 Query: 717 DVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 776 D+ FK LGLL++DEE RFGV+HKE +K R++VD+L LTATPIPRTL+M+++GMRD+SII Sbjct: 737 DIAFKSLGLLVIDEEQRFGVKHKEALKKRRSSVDVLALTATPIPRTLHMSLTGMRDISII 796 Query: 777 ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 +TPP R + +++ EYD + AI +E+ RGGQ+++++N+++ I K AE L +LVPE Sbjct: 797 STPPVDRQPIVSYISEYDDAIAAGAIQKELERGGQIFFIHNNIKTIFKTAENLKKLVPEV 856 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 RIA+ HG++ E LE+ M F ++ ++LVCTTI+E+G+DIP+ANT+II RAD FGLAQ+ Sbjct: 857 RIAVAHGRLNEASLEKAMLQFINREIDMLVCTTIVESGLDIPSANTMIINRADMFGLAQI 916 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 +QLRGR+GR QAYA+L P +T DAQKRL A+ DLG+GF +A DL+IRGAG Sbjct: 917 YQLRGRIGRGEEQAYAYLFVPEEHRLTRDAQKRLAALMEHRDLGSGFQIAMKDLQIRGAG 976 Query: 957 ELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 LG QSG + +G+ ++++LL+ AV LK +P + L + E+ + + + + D++ Sbjct: 977 SALGGSQSGHVAAVGYDMFLKLLDEAVADLKG--QPLTDPL---EPEINVTLSTFISDEY 1031 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076 + + RL+ Y+R++ T E+ ++ EL+DRFG LP+ A +L LR K G++ Sbjct: 1032 VQSIEQRLTIYRRLSQMTTVKEVAAMQQELVDRFGKLPEEAGNMLLKIMLRVLCVKAGVK 1091 Query: 1077 KLEGNEKGGVIEFAEKNHVNPAWLIG 1102 KL+ + F+ + P L G Sbjct: 1092 KLDLTNTSLTLVFSAVHQRRPQALAG 1117 >UniRef50_Q6ARL4 Related to transcription-repair coupling factor n=2 Tax=Desulfobulbaceae RepID=Q6ARL4_DESPS Length = 1184 Score = 724 bits (1870), Expect = 0.0, Method: Compositional matrix adjust. Identities = 439/1149 (38%), Positives = 667/1149 (58%), Gaps = 60/1149 (5%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 L L G++ A L A++A+ + I PD + + F+++ +++ E PY Sbjct: 18 LSGLRGSSTALLAAQLAKNSS--CCCIVPDDHLIPIVVQNLQLFSEKTILSYPSHEIPPY 75 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIV-PVNTLMQRVCPHSFLHGHALVMKKGQRLS 137 + SP Q + ++RL++LYQ + +IV + L++RV P L ++ G+ Sbjct: 76 TALSPDQKVTATRLASLYQAANSEHPTIIVTSIEALLRRVIPKELLSARVELIMAGEDCD 135 Query: 138 RDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL--------PYRLDFFDDEI 189 RD L T L GY V G++A RG ++D++P L P RLDFF D + Sbjct: 136 RDGLITSLLLLGYDKVSLTKNVGDFAVRGGIIDIYPPAFALENGQLHEGPLRLDFFGDTV 195 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRS-----QWR-DTFEVKRD-PE 242 +SLR FD SQR+ ++E LLP +F D +A + + Q R D + + + Sbjct: 196 ESLRTFDPVSQRSTGKLEEAILLPTRDFIIDTSAKKSLQEIGTALQTRADKYSWNEELTQ 255 Query: 243 HIYQQVSKGTLPAGIEYWQPLFF-SEPLPPLFSYFPANTLLVNTGD------LETSAERF 295 + ++++ G AGIE + PLFF + L LF + +T +V + S +R Sbjct: 256 TMLEKINTGQGIAGIESFLPLFFPGKNLSSLFDFLTEDTTMVLMDSFAIQQSMRMSYQRI 315 Query: 296 QADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGF 355 + + L E +G P LPP+ ++L +E+ +L ++ +V+L + ++ NA Sbjct: 316 EQNYL---EVQGAGT--PALPPKEIFLSPEEIKEKLSSFRQVRLS--DIVSEQDNATSYN 368 Query: 356 QKLPDLAVQ--AQQKAPLDALRKFLETF-----DGP-VVFSVESEGRREALGELLAR--- 404 + L Q A+++A L +E +G +V SE + L E+L R Sbjct: 369 TQSHGLLKQEIARRRAKEGILVPLIERIRQWQEEGHRIVICCRSEKHTKNLAEMLERHHF 428 Query: 405 -IKIAPQRIMRLDEASDRGRYLMIGAAEH----GFVDTVRNLALICESDLLGE-RVARRR 458 I + P + L + R I +H GF + +I ES+L G+ R+ ++ Sbjct: 429 NISVVPSP-LSLPDLQKRAEQREILLCDHPLSEGFSLPEQGWDIISESELFGQMRLGSKK 487 Query: 459 QDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAK 518 S++ P EL+ G VVH +HG+G Y G+ + IT +++ + Y +D K Sbjct: 488 SKSKKWAEP----IEFTELNEGDIVVHRDHGLGIYRGLNAIRIQEITNDFMSIEYRDDDK 543 Query: 519 LYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAK 578 LYVPV L+L+SRY G ++ + KLG W +K E+V VA ELL+IYA+R K Sbjct: 544 LYVPVDRLNLVSRYQGISDREPRIDKLGSQNWRNTTKKVKEEVWKVAHELLEIYAKRELK 603 Query: 579 EGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVA 638 G AF + YQ +SFPF+ T Q AIN+VL D+ MDRLVCGDVG+GKTEVA Sbjct: 604 AGRAFAPPGQLYQELEESFPFDETAGQLAAINSVLDDLTDANPMDRLVCGDVGYGKTEVA 663 Query: 639 MRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAE 698 +R AF V++ Q A+LVPTT+LA+QH FR+R N+P+RIE ++RFR+AKEQ +I+ + Sbjct: 664 IRGAFKVVEDGAQAAILVPTTVLAEQHLKTFRERLQNFPLRIECLNRFRTAKEQREIVKD 723 Query: 699 VAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATP 758 +A GKIDI+IGTH+LL DV+FKDLGLLI+DEEHRFGV HKER++ MRA VDILTLTATP Sbjct: 724 LAAGKIDIVIGTHRLLSKDVQFKDLGLLIIDEEHRFGVAHKERLRKMRAEVDILTLTATP 783 Query: 759 IPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYND 818 IPRTL M++ +RDLS+I++PP +R VKTFV E D +V++EAI RE+ R GQ ++++N Sbjct: 784 IPRTLQMSLLSIRDLSVISSPPEQRRPVKTFVAEDDDLVIKEAISRELRRKGQTFFVHNR 843 Query: 819 VENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 V++I + A ++ +LVP+ARIA+ HGQM +ELE +M F ++ +VLV TTIIE+G+DIP Sbjct: 844 VKSIYQIANKIEKLVPDARIAVAHGQMDTKELENIMVSFVNKEVDVLVATTIIESGLDIP 903 Query: 879 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLED 938 +ANT+II RAD+ GLA+++QLRGRVGRS Q++A+LL P +++ D+++RL A+ + Sbjct: 904 SANTMIINRADNLGLAEMYQLRGRVGRSSTQSFAYLLVPSLDSISKDSRERLRALMECNE 963 Query: 939 LGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLED-- 996 LG GF LA +DL+IRG G LLG QSG++ IG+ LY++LL+ V LKA + E Sbjct: 964 LGGGFKLAMNDLQIRGGGNLLGISQSGNIAAIGYDLYLDLLQKTVADLKAQKLSQEEQGI 1023 Query: 997 LTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIAS-AKTENELEEIKVELIDRFGLLPD 1055 E+ L+ + +P ++I D++ R Y+RIA+ ++ + +I+ EL DR+G +P Sbjct: 1024 YDDLDPEINLQHSAFIPSNYITDIDQRYIVYRRIAAMSRGMADFADIRDELSDRYGRIPA 1083 Query: 1056 PARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDG 1115 TLL + ++++ +L + KLE V+ F + V P LI + + + Sbjct: 1084 ETETLLKMIEVKRELIELRVTKLERGRGNIVLTFQDDTPVQPVKLIAFIAESKATKKQAA 1143 Query: 1116 PTRLKFIQD 1124 P K QD Sbjct: 1144 P---KLTQD 1149 >UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBU7_THET1 Length = 1150 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/1078 (39%), Positives = 632/1078 (58%), Gaps = 48/1078 (4%) Query: 25 AACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF--TDQMVMNLADWETLPYDSF- 81 A ATL AE+ H +LI P + A + D +S + + V+ + LPY+ Sbjct: 42 ALWATLFAEM---HTD-TLLIVPRPEEAQNVADSLSTYLWDPKRVLLWPAHDDLPYERIA 97 Query: 82 SPHQDIISSRLSTLYQLPTMQRGVLIV--PVNTLMQRVCPHSFLHGHALVMKKGQRLSRD 139 SP QD RLS L ++ R L++ V ++++ + H +K G + Sbjct: 98 SPTQDSPFRRLSALERILRTDREPLLIVASVKSILEPTLARRYFEDHREFVKTGDAVDII 157 Query: 140 ALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDS 199 AL ++ GY V V E G+++ RG + D++ S+LP RL+ F DE++S+R+FD ++ Sbjct: 158 ALANRVAELGYSPVASVEEVGQFSRRGGIFDIWTPSSDLPIRLELFGDEVESIRLFDPET 217 Query: 200 QRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ----VSKGTLPA 255 QR+ E+E+ +++ +E P + L R Q D ++ + ++Q +S G LPA Sbjct: 218 QRSTREIESFSIISPYEIPVAEYESALERLQQIDLSNLRHEVTSSWKQSLEKLSAGDLPA 277 Query: 256 GIEYWQPLFFSEPLPPLFSYFPANTL----LVNTGDLETSAERFQADTLARFENRGVDPM 311 P +F L L Y T+ L + L S R + + + D Sbjct: 278 IHSIIAP-YFPSGLGNLLDYLSEGTIVFTDLPDRLALTASTLRSHIEGMRLEMEQSGDIP 336 Query: 312 RPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPL 371 LL P W +++ LK P+++ P +A NL F P +++ + Sbjct: 337 SNLLSPVFEWSYIED---RLKALPKIE------PVNSAEGNLKFYPAPQ--IRSSTIDIV 385 Query: 372 DALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMI-GAA 430 D LR +++ +G VF V R + + + LDE +G+ ++ G+ Sbjct: 386 DNLRSWID--EGRTVFIVTRHHER------IRHVAKEHNLPLALDEDVKQGQMFIVPGSI 437 Query: 431 EHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 + G++ NL ++ +++L G R RR + R+ P + LA+L G VVH++HGV Sbjct: 438 QDGWICDDINLVVLSDTELWGYREPRRARSPRKA--PQRVF--LADLQPGSYVVHVDHGV 493 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW 550 +Y G + G EYL+L YA +LYVPV + IS Y GG E L +LG W Sbjct: 494 AKYVGNVMRGSSGAEREYLVLEYAGGDRLYVPVDQIDRISPYIGGGE--PALSRLGTADW 551 Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 +R +++A + +A ELL +YA R +G +F D E ++ F +FP+ T DQ AI Sbjct: 552 ARTKRRAKKAADQLAKELLQLYAAREIAKGHSFSPDNELHKEFESAFPYVETDDQLAAIE 611 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 V +DM P MDRL+CGDVG+GKTEVA+RAAF AV + KQVAVLVPTT+LA QHY+ FR Sbjct: 612 DVKADMESPKPMDRLICGDVGYGKTEVALRAAFKAVADGKQVAVLVPTTVLALQHYETFR 671 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 RF + +R+EM+SR R+ KE+ Q+L ++ +G +DI+IGTH +LQ +V FKDLGL+IVDE Sbjct: 672 SRFNPFGIRVEMLSRLRTKKERDQVLEDLQKGNVDIVIGTHTILQKNVVFKDLGLVIVDE 731 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 E RFGV+HKE +K +R VD+LTLTATPIPRTL MA+SG+RD+S+I T P RL V T++ Sbjct: 732 EQRFGVKHKETLKQIRTQVDVLTLTATPIPRTLQMALSGVRDMSVIETAPEDRLPVYTYI 791 Query: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 + ++R++I+RE+ RGGQV+Y++N V++I K A +L E+VPEARI + HGQM E++L Sbjct: 792 VPKNDSIIRDSIIRELERGGQVFYVHNRVQDIYKVAHKLQEMVPEARITVAHGQMPEQQL 851 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 E+VM DF H ++VLVCTTIIE+G+DIP ANT+I++ A H GLAQL+QLRGRVGRS ++A Sbjct: 852 EQVMLDFMHHHYDVLVCTTIIESGLDIPNANTLIVDDATHMGLAQLYQLRGRVGRSSNRA 911 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 YA+L+ MT DAQKRLEAI+ LGAGF +A DLEIRGAG LG EQSG + I Sbjct: 912 YAYLMYRPDARMTEDAQKRLEAISEATQLGAGFRVAMKDLEIRGAGNFLGPEQSGHVYAI 971 Query: 971 GFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI 1030 G LY +++E AV L+ G+ S ++L +P+L+P+ ++ D +TR+ Y+R+ Sbjct: 972 GLELYTQMIERAVQELRTGQPIS----EPPAVTIDLPIPALIPEHYVSDRDTRIRLYRRL 1027 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088 AS T EL ++ E+ DRFG LP+ A L+ + L+ A K G+ + + +I+ Sbjct: 1028 ASTSTARELRSMESEMRDRFGPLPEEAINLIKLIDLKIVAAKAGVTAIRAADNEVIIK 1085 >UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Peptococcaceae RepID=B1I198_DESAP Length = 1176 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 442/1138 (38%), Positives = 631/1138 (55%), Gaps = 54/1138 (4%) Query: 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDE-ISQFTDQMVMNLADWE 74 Q +LG G LV R P+++I P + A L D+ ++ + + + WE Sbjct: 27 QHVLG--VGGGHQALVCAALARDPAPLLIITPGEREAAALADDLVTLLPGRGIFVFSAWE 84 Query: 75 TLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 LP + ++I R+ L L T V+I PV+ L + + P L V++ GQ Sbjct: 85 LLPVQVLAYSREIGVRRMRVLEALITGTNPVVIAPVDALARLLPPSGVLRERIFVLEGGQ 144 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 194 + ALR +L S GY V QV G+++ RG + DLFP + P R++FF DEI SLR Sbjct: 145 SWTMGALRGRLLSMGYEAVSQVDTAGQFSIRGGIADLFPYTARYPIRVEFFGDEIASLRT 204 Query: 195 FDVDSQRTLEEVEAINLLPAHEFPTD----KAAIELFRSQWR---DTFEVKRDPE----- 242 FD ++QR+ + + + PA E + +A IE ++R D E + D E Sbjct: 205 FDPETQRSRAATDRVTVAPATELVVEDDAWEAGIETLTREYREQLDRLEKQGDTEGARRL 264 Query: 243 -----HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGD-LETSAERF- 295 I + + GIE F+ + + PA + V D + AE F Sbjct: 265 REWVEEILPHLDARSHTPGIEDLLAYFYPQAATLMDYLGPAGVVAVTEPDRVAEVAESFA 324 Query: 296 --QADTLARFENRGVDPMRPLLPPQ-SLWLRVDELFSELKNWPRVQL----KTEHLPTKA 348 +A A +G LLP Q L+L ++LF+ L + V L + Sbjct: 325 QHRAHGYAVLLEQG-----RLLPGQFRLYLDREQLFAALAPFRTVYLSLFGRVGAFSRSD 379 Query: 349 ANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIA 408 ++LP + A L +R+ + VV V + R L L + +A Sbjct: 380 REIRFEVRELP--GNLGRTGAVLGEIRR-RQVAGQRVVLLVGTGERARRLLNSLRQSGLA 436 Query: 409 PQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPD 468 + L + + +G GF LA++ E ++ G+++ QD R Sbjct: 437 AFQAYELGQVQPGQVAVGVGRLNKGFEIAESQLAVLTEREIYGKQL----QDRREPYRLR 492 Query: 469 TLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHL 528 + L G VVH+ HG+GRY G+ LE G + EYL++ Y + KLYVP L L Sbjct: 493 RRTLDELNLAPGDFVVHVNHGIGRYHGIVLLEIGEVKREYLLINYLGEDKLYVPTDQLGL 552 Query: 529 ISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDRE 588 + +Y G E +LGG W+R++++ E VR++A ELL +YA R + G+ F D Sbjct: 553 VQKYIGAEGETPRCSRLGGSEWARSKKRVREAVREMAQELLKLYAARQSLPGYRFPADNP 612 Query: 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 + F +FPFE TPDQ +AI V DM +P MDRL+CGDVG+GKTEVAMRA F AV + Sbjct: 613 WQREFELAFPFEETPDQLKAIMQVKKDMERPRPMDRLLCGDVGYGKTEVAMRAVFKAVTD 672 Query: 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 708 KQ AVLVPTT+LAQQH FR+RF +PV IEM+SRFRS +EQ Q+LA++A GK+DI+I Sbjct: 673 GKQAAVLVPTTVLAQQHLQTFRERFNGYPVVIEMLSRFRSVREQKQVLADLAAGKVDIVI 732 Query: 709 GTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMS 768 GTH+L+Q DV+F DLGL++VDEE RFGV HKE++K NVD++TLTATPIPRTL M++ Sbjct: 733 GTHRLVQDDVQFADLGLIVVDEEQRFGVLHKEKLKLRHPNVDVITLTATPIPRTLYMSLV 792 Query: 769 GMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAER 828 G+RD S++ TPP R V+TFV E D +++REA+ RE+ RGGQVY+++N V + + A Sbjct: 793 GIRDTSLLETPPLDRFPVQTFVVEEDPVLIREAVGRELARGGQVYFVHNRVFELDRVAGW 852 Query: 829 LAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 L ELVPEARIA+ HGQMRE +LE+VM DF ++VLVCTTIIETG+DI NT++++ A Sbjct: 853 LQELVPEARIAVAHGQMREDQLEQVMLDFVAGAYDVLVCTTIIETGLDITNVNTLVVKEA 912 Query: 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATH 948 D GLAQL+QLRGRVGRS+ AYA+ + + A+KRL AI D G+GF LA Sbjct: 913 DQLGLAQLYQLRGRVGRSNRLAYAYFTFRRDRLLGEAAEKRLRAIRDFTDFGSGFRLAKR 972 Query: 949 DLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRM 1008 DLEIRGAG LLG EQ G++ +GF +Y LLE +V LK P +T VE+ + Sbjct: 973 DLEIRGAGNLLGTEQHGNISVVGFEMYCRLLEESVRELKGEAPPE-----EFETVVEVPV 1027 Query: 1009 PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQ 1068 + LPDD+IPD ++ FY +A + +++ + EL DRFG P P LL IAR+R Sbjct: 1028 TAFLPDDYIPDPEQKVQFYHLLARVQQVEDVDHVAEELRDRFGSPPAPVENLLAIARIRA 1087 Query: 1069 QAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLS 1126 A+ I+ + G + E + ++ + L+ + +HY P RL+F ++ S Sbjct: 1088 MAKGFRIKSINGQGRSCRFILGEAHPLDGSTLVAV----SEHY----PGRLRFKEEES 1137 >UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=Bacilli RepID=MFD_BACSU Length = 1177 Score = 714 bits (1843), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/1093 (37%), Positives = 640/1093 (58%), Gaps = 62/1093 (5%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWE 74 +++LL L+G+A + + +A P+ LI ++ A ++ D+++ L D Sbjct: 26 KEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSL-------LEDRS 78 Query: 75 TLPYDSFSPHQDIISS------------RLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSF 122 L Y P ++ISS RL + +L + +++ PV + + + P Sbjct: 79 VLLY----PVNELISSEIAVASPELRAQRLDVINRLTNGEAPIVVAPVAAIRRMLPPVEV 134 Query: 123 LHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRL 182 ++++ G + D L ++L GY D V GE++ RG ++D++P+ SE P R+ Sbjct: 135 WKSSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGIIDIYPLTSENPVRI 194 Query: 183 DFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF---PTDKA-AIELFRSQWRDTFE-V 237 + FD E+DS+R F+ D QR++E + +IN+ PA E P +KA A+E S + + + Sbjct: 195 ELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPEEKARAMEKIDSGLAASLKKL 254 Query: 238 KRDPE---------HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV----- 283 K D + H +++S+G + + F+ +P L Y P NTLL+ Sbjct: 255 KADKQKEILHANISHDKERLSEGQTDQELVKYLSYFYEKP-ASLLDYTPDNTLLILDEVS 313 Query: 284 NTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKN---WPRVQLK 340 ++E ++ +A+ + G +L L ++ +E K + + L+ Sbjct: 314 RIHEMEEQLQKEEAEFITNLLEEG-----KILHDIRLSFSFQKIVAEQKRPLLYYSLFLR 368 Query: 341 TEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGE 400 H + N+ +++ + Q + +F ++ + VVF ++ R + L Sbjct: 369 HVHHTSPQNIVNVSGRQMQ--SFHGQMNVLAGEMERFKKS-NFTVVFLGANKERTQKLSS 425 Query: 401 LLARIKIAPQRIMRLDEASDRGR-YLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQ 459 +LA I + +A +G+ Y+M G + GF + LA+I E +L RV ++ + Sbjct: 426 VLADYDIEAA-MTDSKKALVQGQVYIMEGELQSGFELPLMKLAVITEEELFKNRVKKKPR 484 Query: 460 DSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKL 519 + T N + I++ +EL IG VVH+ HG+G+Y G+ TLE GI +YL + Y KL Sbjct: 485 KQKLT-NAER-IKSYSELQIGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQGSDKL 542 Query: 520 YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 YVPV + + +Y G + L+KLGG W R ++K V+D+A +L+ +YA+R A + Sbjct: 543 YVPVEQIDQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREASK 602 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 G+AF D E + F +FP++ T DQ ++I+ + DM + MDRL+CGDVG+GKTEVA+ Sbjct: 603 GYAFSPDHEMQREFESAFPYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAI 662 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 RAAF A+ + KQVA+LVPTT+LAQQHY+ ++RF ++P+ I ++SRFR+ KE + + + Sbjct: 663 RAAFKAIGDGKQVALLVPTTILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIKGL 722 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 G +DI+IGTH+LL DV +KDLGLLI+DEE RFGV HKE+IK ++ANVD+LTLTATPI Sbjct: 723 KNGTVDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPI 782 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTL+M+M G+RDLS+I TPP R V+T+V EY+ +VREAI RE+ RGGQVY+LYN V Sbjct: 783 PRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRV 842 Query: 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 E+I++ A+ ++ LVP+A++A HG+M E ELE VM F +VLV TTIIETG+DIP Sbjct: 843 EDIERKADEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPN 902 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 NT+I+ AD GL+QL+QLRGRVGRS+ AYA+ K +T A+KRL+AI +L Sbjct: 903 VNTLIVFDADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTEL 962 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 G+GF +A DL IRGAG LLG +Q G ++++GF LY ++L+ A++ K G E Sbjct: 963 GSGFKIAMRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERK-GDTAKTEQF-- 1019 Query: 1000 QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPART 1059 +TE+++ + + +P+ +I D ++ YKR S T E E++ E+IDRFG P Sbjct: 1020 -ETEIDVELDAYIPETYIQDGKQKIDMYKRFRSVATIEEKNELQDEMIDRFGNYPKEVEY 1078 Query: 1060 LLDIARLRQQAQK 1072 L +A ++ A++ Sbjct: 1079 LFTVAEMKVYARQ 1091 >UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NPX2_9DELT Length = 1162 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/1126 (38%), Positives = 636/1126 (56%), Gaps = 58/1126 (5%) Query: 24 GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSP 83 G A A LV + A P++ + PD + A +L +++ F+D V++ D E PY + P Sbjct: 22 GGAVAWLVGRLGGL-ARPLLCVCPDDEQARQLATDLALFSDLPVVHYPDLEVAPYAALRP 80 Query: 84 HQDIISSRLSTLYQLPTMQRGVLIVPVN-TLMQRVCPHSFLHGHALVMKKGQRLSRDALR 142 ++RL+ L+ + ++V L R P L A ++ +G+ L Sbjct: 81 DPGSRAARLAALFAISDAASPFIMVAAGRALSARTLPPERLQALAELVIRGEECDAAELT 140 Query: 143 TQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRT 202 +L + GY V V E GEY+ RG ++D+FP G E P RLDFF D ++ +R FD SQR+ Sbjct: 141 GRLAAGGYERVALVQEVGEYSIRGGIIDIFPPGQEYPLRLDFFGDTVEEIRRFDPISQRS 200 Query: 203 LEEV-EAI------NLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLP- 254 + E+ EAI L PA + P +A +E R QW + + R P ++ + P Sbjct: 201 VGELAEAILLPASDCLYPAADSPAQQALLERHR-QWAASLQWDRQPSRQLEECLRQHRPF 259 Query: 255 AGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG------DLETSAERFQADTLARFENRGV 308 AG +++ PL L PL +Y PANTL++ +L ER ++ Sbjct: 260 AGDQFFLPLLEPAALSPL-AYLPANTLIIQVDHPRLLQNLALHRERIASNY-----QELT 313 Query: 309 DPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQK 368 +P LPP L+L ++L + ++ L AN FQ V +Q+ Sbjct: 314 ATAQPALPPDELFLSAEQLHGHFEQAAGARIFP--LAPGEANGQRVFQIEAGNHVLLKQQ 371 Query: 369 -----------APLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE 417 APL K V+ + + + ELLA + R+ + Sbjct: 372 LDLKRREEGLLAPLAQQIKQWRQQGERVLLACRTPRHAAKMAELLAGHGVTDGDHCRILK 431 Query: 418 ASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAEL 477 + + EH + E +L G+R R + ++ P T I + E+ Sbjct: 432 QPLSSGFDLPSEGEH----------WLSEGELFGDR--RLESAAAKSRAPATKIVSHDEI 479 Query: 478 HIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAE 537 + G PVVH HG+G Y G+ +E GIT +YL + Y KLY+PV L+ + +Y G A+ Sbjct: 480 NPGDPVVHRRHGIGIYRGLVPIELDGITNDYLEIHYRGADKLYIPVDQLNSVGKYKGLAD 539 Query: 538 ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSF 597 + L KLG ++W RQK + V VA +LL +YA+R EG F E Y +SF Sbjct: 540 QEPTLDKLGDNSWLATRQKVKKAVWQVARDLLKLYAKRQLAEGNRFSPPGEMYHELEESF 599 Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 P++ TP Q +AI V+ D+C MDRLVCGDVG+GKTEVA+RAAF V++ QVAVLVP Sbjct: 600 PYDETPGQLKAIGEVIDDLCSSKPMDRLVCGDVGYGKTEVAVRAAFKVVEDGGQVAVLVP 659 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 TT+LA+QH FR+R A +PVRI+ ++RFRS+ EQ +++A++A KIDI+IGTH+LL +D Sbjct: 660 TTVLAEQHAATFRERLAGFPVRIDSLNRFRSSAEQKRLVADLAAAKIDIVIGTHRLLSAD 719 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 VKF+ LGLLIVDEEHRFGV HKE+IK +R+ VD+LTLTATPIPRTL +++ G+RDLS+I+ Sbjct: 720 VKFRRLGLLIVDEEHRFGVSHKEKIKKLRSGVDVLTLTATPIPRTLQLSLLGVRDLSVIS 779 Query: 778 TPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEAR 837 +PP R AVKTF+ +D +V++EAI+RE+ R GQV+ ++N V +I + A R +LVP A+ Sbjct: 780 SPPRLRRAVKTFIARHDDLVIKEAIMRELGRDGQVFLVHNRVSSIHEVATRAQQLVPTAQ 839 Query: 838 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 897 +A+ HGQM R+LE +M F + NVLVCTTIIE+G+DIP ANTIII RAD GLA+++ Sbjct: 840 VAVAHGQMPARQLEEIMVRFVRREINVLVCTTIIESGLDIPDANTIIITRADRLGLAEIY 899 Query: 898 QLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGE 957 QLRGRVGRS QAYA+LL P + +A+ RL+A+ +LG GF LA DL+IRG G Sbjct: 900 QLRGRVGRSRQQAYAYLLVPALDDLAGEARHRLQALMDYNELGGGFKLALSDLQIRGGGN 959 Query: 958 LLGEEQSGSMETIGFSLYMELLENAVDALK----AGREPSLEDLTSQQT------EVELR 1007 +LGE QSG++ +G+ +Y++LL+ V LK G E S + T + E++L Sbjct: 960 ILGESQSGNIAAVGYDMYLDLLQKTVLDLKRRLREGEETSSDPETMAEVGEEFEPEIKLA 1019 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 + + +P ++ DVN R Y+RI +A+ + L +I+ E DRFG LP L +I L+ Sbjct: 1020 IAAHIPASYVDDVNQRYLCYRRITAAEDDATLADIRDEFADRFGPLPPETANLFEIISLK 1079 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRL 1113 + +L I K+E + FA V P L L+ + + RL Sbjct: 1080 NRLAELKISKIEQGPTALALFFAPSTPVPPERLTELVAQGKKGMRL 1125 >UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYW6_THERP Length = 1165 Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust. Identities = 449/1095 (41%), Positives = 641/1095 (58%), Gaps = 65/1095 (5%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL 70 + +G+ + EL AA ++A +A P+++I P +A L D + Q ++ + + Sbjct: 31 LASGQSLVAEELPVAARPAVLAALARILDRPLLVIVPRQAHADELADAVGQLLGEIPVEV 90 Query: 71 ADW---ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHA 127 W ETLPYD F+ + R L ++ G+ I P L+Q + P+ L G Sbjct: 91 --WQAPETLPYDVFAQDRASAVERSWFLQRMTEPSPGLFIAPARGLLQLLPPNESLRGCP 148 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 L ++ GQ+++ + L +GY V V + G ++ RG ++D++P G++L R++FF D Sbjct: 149 LTLRVGQKMALQTVLDYLVDSGYAPVPLVQQPGSFSRRGGIVDVWPPGNDLAVRIEFFGD 208 Query: 188 EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDK---AAIELFR---SQWRDTFEVKRDP 241 EIDS+R F+ +QR+++ + +I LLP E P + AA +L R S R EV+ + Sbjct: 209 EIDSIRRFEPTTQRSVDRLHSIMLLPLSEAPLPQLQAAATKLRRLDTSSLRP--EVREEW 266 Query: 242 EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN--TLLVNTGDLETSAERF--QA 297 E + QQ+ +G L E P F E L FP + ++V+ G + + ++ QA Sbjct: 267 ERLCQQIERGELVPLPELALPFVFPEA-SSLLDRFPRSFPVVVVDPGAVRLTIDQLTQQA 325 Query: 298 DTLARFEN------RGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAAN- 350 + L RG+ RP P +W + L+ P + L T A Sbjct: 326 EELRETSELSGELPRGLP--RPYHPDDRIW-------TSLRVHPILWLGTVEQGDSANGD 376 Query: 351 --ANLGFQK-LPDLAVQAQQKAPLDALRKFLETF---DGPVVFSVESEGRREALGELLAR 404 ++LGF +P +A + LD L L F D V E R L LL+ Sbjct: 377 IPSDLGFTTDIPAIAGR------LDTLPAVLAPFLAEDYAVTLVTEQADR---LAHLLSE 427 Query: 405 IKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRR- 463 + RGR + G +H L L+ + +L G R R + RR Sbjct: 428 SSQYAEAASIAASTIARGR--LPGGWKHREA----RLLLLTDRELFGLRRLPRPRGRRRF 481 Query: 464 TINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPV 523 + D L R L G VVH++HG+ RY G+ L G+ EYL+L YA + +LY+PV Sbjct: 482 EVTSDLLSR----LVPGAYVVHVDHGIARYGGLVHLTINGVHREYLLLEYAENDRLYLPV 537 Query: 524 SSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAF 583 L I+ Y + L +LG WSR +++ E VR++A ELL +YA R A G AF Sbjct: 538 DQLDRITLYES-LDGEPKLTRLGSPEWSRVKRRVREAVRELAFELLQLYAAREAAPGIAF 596 Query: 584 KHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 643 D + + +SFP+E TPDQ +AI V +DM +P MDRL+CGDVGFGKTEVA+RAAF Sbjct: 597 GPDTQWDRELEESFPYEETPDQWRAIQEVKADMERPRPMDRLLCGDVGFGKTEVALRAAF 656 Query: 644 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK 703 AV+N QVA+LVPTT+LA QHY+ FR+R A++PVRIEM+SR RS +EQ I+ + G Sbjct: 657 KAVNNGYQVAILVPTTVLALQHYNTFRERLASYPVRIEMLSRLRSKREQRAIIEGLRAGT 716 Query: 704 IDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTL 763 +DI+IGTH+LLQ DV FK LGL+I+DEEHRFGV HKE K +R NVD+LT+TATPIPRTL Sbjct: 717 VDIVIGTHRLLQRDVAFKRLGLVIIDEEHRFGVAHKEHFKRLRTNVDVLTMTATPIPRTL 776 Query: 764 NMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQ 823 +A+SG+RDLS+IATPP R V+TFV V+REAILREI RGGQVY ++N V +I Sbjct: 777 YLALSGVRDLSVIATPPVDRTPVRTFVTPARDSVIREAILREIARGGQVYVVHNRVHSIL 836 Query: 824 KAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 A+RL LVPEAR A+ HGQM E+ELER++ DF ++++VL+CT IIE+G+DIP+ NTI Sbjct: 837 DFAQRLRGLVPEARFAVAHGQMPEQELERIIVDFIERKYDVLICTAIIESGVDIPSVNTI 896 Query: 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGF 943 II++A GL QL+QLRGRVGRSH +AYA+LL + ++ +A+ RLEAI +LGAG Sbjct: 897 IIDQAQQLGLTQLYQLRGRVGRSHQRAYAYLLYDDRRPLSAEARARLEAIQEATELGAGL 956 Query: 944 ALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTE 1003 +A DLEIRGAG +LG EQSG + +G LY +LL AV L+ GR P E + Sbjct: 957 QIALRDLEIRGAGNILGPEQSGHIAAVGLELYTQLLARAVQELREGR-PIDE---APSVT 1012 Query: 1004 VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDI 1063 ++L + + +P ++ D R+ Y+R A +T+ +LE++ E+ DRFG LPDP + L+D+ Sbjct: 1013 IDLPIEATIPSEYCGDEAIRMRLYQRFAEIRTDEQLEDLVSEIRDRFGPLPDPVQRLVDL 1072 Query: 1064 ARLRQQAQKLGIRKL 1078 A+LR A +LG+ L Sbjct: 1073 AQLRLWANRLGLASL 1087 >UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W311_DESAS Length = 1197 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1145 (37%), Positives = 644/1145 (56%), Gaps = 80/1145 (6%) Query: 17 RLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNLADWET 75 +++ L+ A + ++A + + ++I Q A L +++ D VM Sbjct: 36 QVVSGLSSAQKSFVIAGLVQAMRQTALIITASDQEAAGLTEDLKNLLPDLKVMTFPARRL 95 Query: 76 LPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 LPY F+ ++I+ R+ L L + V+I PV LM+R+ P + L + GQR Sbjct: 96 LPYQVFAYSKEILRQRMEVLESLCRGENPVIIAPVEALMRRLGPCADFCSARLELNVGQR 155 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 + + L GY V+ V HG+++ RG +LD++P+ P R++FFDDE+DS+R+F Sbjct: 156 YELPQMVSCLHEHGYERVNLVESHGQFSVRGGILDIYPITGINPVRVEFFDDEVDSIRIF 215 Query: 196 DVDSQRTLEEVEAINLLPAHEFPTDKA----AIELFRSQW---RDTFEVKRDPE------ 242 + +QR+ E + + + P E + A + ++ R + K D E Sbjct: 216 NPGTQRSEENMSQMQIFPVREMVVRQGDWERAYQALSQEYQYRRRNLDKKSDSEVLDNLS 275 Query: 243 ---HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPA--------------NTLLVNT 285 + +S+ IE + P F+ E + L +Y A NT L+ Sbjct: 276 RCEEVLDNISQAKYFDSIEQYLPYFYDEDIT-LLNYIKAESLVLVDEPSRLQENTDLLQR 334 Query: 286 GDLETSAERFQADTLARFENRG----------VDPMRPL----LPPQ-SLWLRVDELFSE 330 ET +E +A + + +G + R + LP Q SLW + + Sbjct: 335 ERTETYSELMKAGRVLPGQFKGYTDWAGIHKQITGFRAIYFSFLPRQASLWRSCNTVNFP 394 Query: 331 LKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVE 390 +K K E L + + + + L + + A L L D + +E Sbjct: 395 VKTMQNFMGKVEMLAEEIRHYKMSRYGVVLLVKNSDRAAQL-----VLSLRD----YDLE 445 Query: 391 SEGRREALGEL--LARIKIAPQRIMRLDEASDRGRYLMIGAAEH---GFVDTVRNLALIC 445 + ++ L E L + P + DRGR ++ H GF LA+I Sbjct: 446 ALYLKKDLSEYPHLNVQEDMPDS--KTKYKVDRGRGQIVILPMHLSNGFELVSGKLAVIT 503 Query: 446 ESDLLGER----VARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEA 501 E+++ G R V R+R + + AEL G VVH+ HG+GRY G+ L Sbjct: 504 ETEIYGHRKKPSVQRQRVQDKMEL--------FAELKTGDYVVHVNHGIGRYDGVVQLTI 555 Query: 502 GGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKV 561 G + +YL++ YA + KLY+P + +I +Y G L +LGG WSR + K E V Sbjct: 556 GDVKRDYLLVKYAGEDKLYIPTDQVEMIQKYLGSEGGTPKLSRLGGAEWSRVKSKVKEAV 615 Query: 562 RDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621 +++A ELL +YA R A +G F D Q F +FP+E TPDQ +AI V +DM +P Sbjct: 616 KEMAQELLALYAAREAVQGHPFSKDTVWQQEFEAAFPYEETPDQLKAIEEVKADMERPRP 675 Query: 622 MDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIE 681 MDRL+CGDVG+GKTEVA+RAAF AV + KQVAVLVPTT+LAQQH++ F++RFA +PV I Sbjct: 676 MDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLVPTTILAQQHFNTFKERFAKYPVNIA 735 Query: 682 MISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKER 741 M+SRF +A+ Q QI+ E+ G++DI+IGTH+L+Q D+KFKDLGL++VDEE RFGV HKE+ Sbjct: 736 MLSRFITARRQRQIVQELLLGQVDIVIGTHRLVQDDIKFKDLGLVVVDEEQRFGVTHKEK 795 Query: 742 IKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREA 801 +K +R NVD+LTLTATPIPRTL+M++ G+RD S++ TPP R+ V+T+V E + ++VREA Sbjct: 796 LKQLRQNVDVLTLTATPIPRTLHMSIVGVRDTSLLETPPEDRIPVQTYVLEEEPVIVREA 855 Query: 802 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR 861 I RE+ RGGQVYY++N V ++ + A L LVP+A IAIGHGQM+E LE VM DF +++ Sbjct: 856 IRRELGRGGQVYYVHNRVADLDRVAGWLKGLVPDAAIAIGHGQMKEDRLENVMLDFMNKK 915 Query: 862 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA 921 F++L+CTTIIETG+DI NT+I++ AD+ GLAQL+QLRGRVGR++ AYA+ K Sbjct: 916 FDILLCTTIIETGLDIQNVNTLIVKDADYMGLAQLYQLRGRVGRTNRLAYAYCTFRGDKV 975 Query: 922 MTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLEN 981 M+ A+KRL A+ + G+G+ +A DLEIRGAG +LG EQ G + +GF LY LLE Sbjct: 976 MSELAEKRLSAVREFTEFGSGYKIAMRDLEIRGAGNILGPEQHGHIAAVGFDLYCRLLEE 1035 Query: 982 AVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEE 1041 AV K G E+ +T VEL + + +PD+++ D+N ++ YKR+A+ + L E Sbjct: 1036 AVLEAKGG-----ENAKPIETLVELPVTAYIPDEYVIDLNQKVELYKRMANIRDIKMLSE 1090 Query: 1042 IKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLI 1101 ++ ELIDRFG +P+P LL + R++ A L I+ + ++FA + + LI Sbjct: 1091 MEDELIDRFGDIPEPVLNLLAVTRIKALAVNLKIKNISRINGYYRLQFAASHDLTGEKLI 1150 Query: 1102 GLLQK 1106 + +K Sbjct: 1151 TVSEK 1155 >UniRef50_A9G788 Transcription-repair coupling factor n=3 Tax=Proteobacteria RepID=A9G788_SORC5 Length = 1271 Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/1089 (39%), Positives = 634/1089 (58%), Gaps = 54/1089 (4%) Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPT-MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKK 132 E PY +P + +RL+TL+ L + VL+ P+ L+++V + HA ++ Sbjct: 159 EASPYADVNPDRRGAQTRLATLFHLGMDLPWSVLVCPITALIRKVVSRDEITEHAELVIA 218 Query: 133 GQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 Q + RDAL +L ++GY V + G +A RGALLD++ +ELP R+DF+ D + S+ Sbjct: 219 EQEMDRDALSARLGASGYVRSPLVEDPGTFAVRGALLDVWAPSAELPVRIDFYGDIVASI 278 Query: 193 RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEH----IYQQV 248 + F+ D QRT+ +V+ + + PA E A +E R + R +V P + V Sbjct: 279 KTFNPDDQRTVADVKEVWIPPAREAILTPANVERARQRVRAACDVIDFPSTKARALVDDV 338 Query: 249 SKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL-LVNTGDLETSAERFQADTLARF-ENR 306 + G G E + P F L SY P + L L+ T+A R + L R +R Sbjct: 339 ASGRAFFGAEGYLPAFID--LASFTSYLPDDALILLEDPSSVTAAVR---NELGRAGADR 393 Query: 307 GVDPMRPLLPPQSL---------WLRVDELFS----------ELKN-WPRVQLKTEHLPT 346 P P S WL + + E +N R ++ E +P+ Sbjct: 394 SHKDREPHFPLASFYEDEAHVASWLGARAVLALHRTGVEGAAENRNSLERFEVVPEDVPS 453 Query: 347 KAANANLGFQKLPDLAVQAQQK-APLDALRKFLETFDGP---VVFSVESEGRREALGELL 402 A ++ A ++ K LD L + + + V+ + ++ + E L LL Sbjct: 454 LATRDQSDLERAIKTARASRGKHGALDPLVRRVVAWQEAGLRVLIAARAQTQVERLVALL 513 Query: 403 ----ARIK-----IAPQRIMRLDEASDRGRYLMI-GAAEHGFVDTVRNLALICESDLLGE 452 R+K P AS R L++ G+ G + LAL+ E ++ G Sbjct: 514 RHRDVRVKANLGPFDPAFFDGSSSASPRDTALVVTGSLARGVIAPAEGLALVTEEEIFGA 573 Query: 453 RVARRRQDS--RRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLM 510 R RR + T + +L L +G VVH+EHG+GRY G+ + G T + + Sbjct: 574 RAHRRAARAAASSTKPSQAFLEDLRNLGVGDHVVHVEHGIGRYLGLVHKQVGSTTVDLIA 633 Query: 511 LTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLD 570 + YA KLY+PV L+ I +++GG E L +LGG +++ + + + VR +A ELL Sbjct: 634 VEYAGGDKLYLPVYRLNQIQKFSGG-EGTPKLDRLGGQTFAKTKARVEKSVRKMADELLR 692 Query: 571 IYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDV 630 +YA+R A + Y+ F +FPF+ TPDQA+AI V +D+ MDRLVCGDV Sbjct: 693 LYAERRAATAEPVPPPDDDYRAFEATFPFDETPDQARAITEVTADLESGRPMDRLVCGDV 752 Query: 631 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAK 690 GFGKTEVA+RAAF A + +QVAVL PTT+LAQQHY +FR R A++P+ + ++SRF+S + Sbjct: 753 GFGKTEVAIRAAFRAANAGRQVAVLCPTTVLAQQHYLSFRSRMASYPIEVRVMSRFQSKQ 812 Query: 691 EQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVD 750 EQ ++ + +G +D++IGTH+LL DV FK LGLL+VDEE RFGV HKERIKA++ NVD Sbjct: 813 EQDEVSRGLRDGSVDVVIGTHRLLSKDVHFKRLGLLVVDEEQRFGVTHKERIKALKTNVD 872 Query: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGG 810 +LTL+ATPIPRTL MA+SG+RD+SII TPP R A++T V +D V+REA+LRE+ RGG Sbjct: 873 VLTLSATPIPRTLQMAVSGLRDMSIITTPPVDRRAIRTVVTRHDEAVLREAVLRELGRGG 932 Query: 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 870 QV+Y+YN VE + + A RLAELVP ARI + HGQM E+ LE+ M DF R++VL T I Sbjct: 933 QVFYVYNRVEGLYERAARLAELVPSARICVAHGQMSEQSLEQAMLDFVEGRYDVLCATAI 992 Query: 871 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRL 930 IE+G+DIP ANTI+I+RAD FGL+QL+QLRGRVGRS +AY +L+ P P AMT +A+ R+ Sbjct: 993 IESGLDIPRANTILIDRADMFGLSQLYQLRGRVGRSKERAYCYLIVPPPNAMTDEARARI 1052 Query: 931 EAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGR 990 EA+ +LG+GF +A+ DLE+RG+G+LLG EQSG++ +GF L+ ++L+ AV L+ Sbjct: 1053 EALERHTELGSGFQIASLDLELRGSGDLLGAEQSGTVAQVGFELFCQMLDEAVHELRG-- 1110 Query: 991 EPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRF 1050 EP + D+ TE+ +LLP+++I DV RLS YKR+A A + +++++ VE+ DRF Sbjct: 1111 EPVVHDV---DTELSFDADALLPEEYISDVGVRLSLYKRLAGAASTEDVQDLAVEMEDRF 1167 Query: 1051 GLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQH 1110 G P AR + + RL+ + ++L E + KG + E ++ A ++ L+Q + Sbjct: 1168 GPPPLEARRFVHLMRLKTELRRLKALACEASAKGVTLHLREDTPLDHAKVLKLVQPKASP 1227 Query: 1111 YRLDGPTRL 1119 YRL RL Sbjct: 1228 YRLSPDMRL 1236 >UniRef50_Q8D3A2 Mfd protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3A2_WIGBR Length = 685 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/666 (48%), Positives = 477/666 (71%), Gaps = 3/666 (0%) Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G ++H++HG+G+Y G +E GI EY+++ YA + LY+P +SLHLIS+Y ++ Sbjct: 21 GDFIIHIDHGIGKYIGTKFIETSGIKNEYMVIQYAENDILYLPFTSLHLISKYKKNNYDS 80 Query: 540 --APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSF 597 L KLG D W + +K +K+ D+A E+LD ++R +K+GF+F+ +Y+LFC+ Sbjct: 81 NLIILDKLGSDTWKKYSKKIIKKINDIAVEILDNASERLSKKGFSFELKFNKYKLFCNEC 140 Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 F+ T DQ +AI V+ DM + M+RL+CGDVGFGKTE+AMRAAF+A+ N KQV++L P Sbjct: 141 NFDLTQDQNKAILEVIDDMKKSSVMNRLICGDVGFGKTEIAMRAAFIAIQNKKQVSLLTP 200 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 TTLL+QQH+DNF+ RF WP++I ++SRF + KEQ +++ + G+IDILIGTH++LQ D Sbjct: 201 TTLLSQQHFDNFKLRFKKWPIKISILSRFLNKKEQNKVIKMILIGEIDILIGTHRILQKD 260 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 + +KDLGLLI+DEEHRFGV KE IK +R VD+L+LTATPIPRTLNMAM+G+RDLSII+ Sbjct: 261 IIWKDLGLLIIDEEHRFGVSQKECIKTVRTGVDVLSLTATPIPRTLNMAMNGLRDLSIIS 320 Query: 778 TPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEAR 837 TPP RL VKTF+ EY+ ++++AI E+ R GQ+YYL+N++ I + ++ L ++ P+ R Sbjct: 321 TPPKYRLPVKTFIYEYNKDIIKKAIKNELSRKGQIYYLHNNISTINETSKILKKIAPKVR 380 Query: 838 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 897 I I H +M + L++ M DF +F++LVCT+IIETGIDI ANTIIIE+A+ FGLAQL+ Sbjct: 381 IKISHSKMCKNLLKKTMQDFKENKFDMLVCTSIIETGIDIANANTIIIEKANQFGLAQLN 440 Query: 898 QLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGE 957 QLRGRVGRS QAYA+L T ++ +++KRLEAI+S+ LG+GF+L+ +DLEIRG+GE Sbjct: 441 QLRGRVGRSFRQAYAYLFTSKSNSLNENSKKRLEAISSINKLGSGFSLSINDLEIRGSGE 500 Query: 958 LLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFI 1017 LLG +QSG + +IG SLY +LL+ ++ +K+G+E SLE + TEV L +P+ +PD +I Sbjct: 501 LLGSKQSGKINSIGISLYNKLLKKSIKLIKSGKELSLETIKENFTEVNLNIPAFIPDSYI 560 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 PDV+ RL +YK+ S +T++E+ +K + +FG LP L++IA +RQ+A +GI+ Sbjct: 561 PDVSIRLFYYKKFFS-ETKSEINNLKNIITSKFGKLPKSVCYLIEIAYIRQKANFIGIKI 619 Query: 1078 LEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQ 1137 + N KGG +EF + N +N I LL+ P+ Y++ T+L+ + +I++++ Sbjct: 620 ININFKGGFVEFNKNNSINYESFIRLLKNYPKIYKIISQTKLRIKYLTKSHEEKIDYIKN 679 Query: 1138 FMRELE 1143 F+ ++ Sbjct: 680 FLNYIK 685 >UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LNZ8_SYNFM Length = 1189 Score = 699 bits (1803), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/1115 (37%), Positives = 648/1115 (58%), Gaps = 43/1115 (3%) Query: 14 GEQRLLGELTGA---ACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL 70 GE R L GA A A L+A P +L+ P + A + I+ F + Sbjct: 31 GESRESAVLRGAQKPAVAYLLARGMATLKRPFLLVTPTDREAESFAETIAFFAGNDLHRQ 90 Query: 71 ---AD---WETLPYDSFSPHQDI-----ISSRLSTLYQL-PTMQRGVLIVPVNTLMQRVC 118 AD W LP S Q + ++ R+ TL+ ++ V + LM+R+ Sbjct: 91 DVPADRRVW-CLPSRSGQKSQSLGKMATMARRMETLHAFRASIGSNVFVTSAVALMERLL 149 Query: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL 178 L H+ KG+ + + L L GY V V E+G+++ RG +LD++ Sbjct: 150 LPEVLLAHSDYRVKGETVELETLCATLVERGYYRVSLVEEYGDFSIRGGVLDVYAPLYRW 209 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFR-SQWRDTFEV 237 P RL+FF DE++S+R+F +QR++ +E LLPA E D +A E R + + D E Sbjct: 210 PLRLEFFGDELESIRLFHPSTQRSMGILEDAVLLPASEVILDVSARERAREAVYADVREG 269 Query: 238 KRDPE--HIY-QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSA-- 292 + P +++ ++ +G E +F+ E +++Y T++V + L+ Sbjct: 270 RLTPAAGNVWLDKLQEGHQFGAFESIMSVFY-EKTVTVWNYLDPATVVVWSDALQIRKIM 328 Query: 293 ERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKA-ANA 351 E F +R N P PP L + L ++ +++ ++ + + T+ A Sbjct: 329 EEFFLHA-SRDWNENHSPHEWRRPPSELLEIPERLIADGESFQQLIVNSLSGGTEPRAVF 387 Query: 352 NLGFQKLPDLAV----QAQQKAPLDALRKFLETF--DGPVVFSV----ESEGRREALGEL 401 ++G LA+ A+++ L+ L + + + +G + F V E GR L E Sbjct: 388 DMGTSGHEQLALSVRAHAEKERLLEPLARQFQRWREEGILSFLVCRQKEQAGRLSELLEG 447 Query: 402 LARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDS 461 + + +++G+ + GFV LA++ E ++ G+R RR S Sbjct: 448 HGTDTVLTLLPFGAESYEAPAVKVIVGSLDRGFVWPAERLAVVAEEEIFGKRTRRRSGKS 507 Query: 462 RRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYV 521 + + + +LHIG VVH++HG+G Y + L GI ++L+L Y + +LYV Sbjct: 508 VSGL----FLSSFQDLHIGDFVVHVDHGIGVYKELVHLAVRGIESDFLLLEYQDGDRLYV 563 Query: 522 PVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGF 581 PV L + +Y G + + KLGG +W A++KA E VA ELL +YA+R EGF Sbjct: 564 PVDKLQKVQKYLGLEGQQPKIDKLGGRSWETAKKKALESAERVAEELLSLYAKRQIGEGF 623 Query: 582 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 641 F +Q F +F +E TPDQ +AI+ VL DM MDRL+CGDVG+GKTEVA+RA Sbjct: 624 RFSPPDSYFQKFEATFSYEETPDQMRAIDDVLDDMASRRPMDRLICGDVGYGKTEVALRA 683 Query: 642 AFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE 701 AF AV + KQVA+LVPTT+LA+QHY +F +RF +PV +E +SRF++ +QT +L + Sbjct: 684 AFKAVMDGKQVAMLVPTTVLAEQHYQSFTERFEGFPVVVETLSRFKTPAQQTLVLKGLKN 743 Query: 702 GKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPR 761 G +D+++GTH+LLQSDV F+DLGLL++DEEHRFGV+HKER+K MR +VD+LTLTATPIPR Sbjct: 744 GTVDVVVGTHRLLQSDVAFRDLGLLVIDEEHRFGVKHKERMKEMRVSVDVLTLTATPIPR 803 Query: 762 TLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVEN 821 TL+MA++G+RDLS I TPP R A++TF+ +YD +REA+ RE+ R GQV++++N V++ Sbjct: 804 TLHMALAGIRDLSTIETPPQDRHAIETFICKYDEFTIREAVYRELRRSGQVFFVHNHVQS 863 Query: 822 IQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 I + A + L+PEA+IA+ HGQM+ER+LE+VM DF ++ +VLVCTTIIE+G+DIP AN Sbjct: 864 IYQTANAIGRLIPEAKIAVAHGQMKERDLEKVMLDFIRRKIDVLVCTTIIESGLDIPAAN 923 Query: 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGA 941 TIII RAD FGLAQ++QLRGRVGRS QA+A+LL P ++ DAQKRL A+ +LGA Sbjct: 924 TIIINRADKFGLAQIYQLRGRVGRSSEQAFAYLLIPGEHLISRDAQKRLRALLDFSELGA 983 Query: 942 GFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQ 1001 GF +A +DL+IRG G +LG QSG + +G+ LY+ELLE + +K G E E + Sbjct: 984 GFKIALNDLQIRGGGTILGSSQSGHIAAVGYELYLELLEKTIKEMK-GEERETESI---D 1039 Query: 1002 TEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLL 1061 E+ + + + LP+ FIPD + RL YKR+A+ ++++ E DR+G P+ AR L+ Sbjct: 1040 PEINVPLSAFLPETFIPDKDQRLIAYKRLATLAEPAAVDDLAGEWRDRYGPFPEGARNLV 1099 Query: 1062 DIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVN 1096 +A++R ++LG+ +L+ ++ + FA + V+ Sbjct: 1100 MLAKMRLLFKRLGVVRLDRDKDFFSLHFAPRVSVD 1134 >UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B116_HERA2 Length = 1207 Score = 696 bits (1797), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1094 (38%), Positives = 624/1094 (57%), Gaps = 74/1094 (6%) Query: 43 VLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ 102 +LIA A+R+H +++ + + VM +TLPY+ S I++ RL+ L +L + Sbjct: 60 LLIAATPDAAVRMHADLTAWLGENVMLFPPTDTLPYEHMSADIGIVAQRLAVLGRLHASE 119 Query: 103 RGVLIVPVNTLMQ-RVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGE 161 ++ V LMQ + P F L+ + Q R L S GYR + G+ Sbjct: 120 PICVVASVKALMQPTMTPEEFQFATRLLRQGDQHDPRKLL-AHWVSLGYRVGPTAEQPGD 178 Query: 162 YATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDK 221 + RG ++D+FP S+ P RL+F+DD+++SLR++D SQR+ + V I + PAHE P + Sbjct: 179 LSQRGGIIDIFPPTSDRPIRLEFWDDQLESLRIYDPISQRSDKRVRQIQISPAHEIPFWR 238 Query: 222 AAIELFRSQWRDTFEVKRDPEHIY----QQVSKGTLPAGIEYWQPLFFSEPLPP----LF 273 + R + ++R+ +H + + + G G ++ P FF P L+ Sbjct: 239 RTEAIKRIEQLQIASLRREVQHEWATAREHLETGQRFEGRAFYAP-FFRTPHEAAEAGLW 297 Query: 274 SYFPANTLLVNTGDLETSAERFQADTLA------RFENRGVDPMRPLLPPQSLWLRVDEL 327 + PA+ +++ + + E +A+ + + A + EN + P P P W + Sbjct: 298 QHLPASAIILLSEEHELNAQGIELQSHADLVRSTQIENNELPPDFPF--PLIAWTFIRR- 354 Query: 328 FSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQA-----QQKAPLDALRKFLETFD 382 ++ W + L + + A + N F + QA Q + LR+ L + Sbjct: 355 --SIQRWSCLNLSNQPI---ADDQNDSFVHEINTFSQAASYGGQTDRLFEDLRERLVGGE 409 Query: 383 GPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMI--GAAEHGFVDTVRN 440 V+ S ++ RE L I + +D+ + ++I G GF Sbjct: 410 RVVLISPQASRLRE-LASQHNLALIGEEDGPDVDDPPFQSGTIIIRHGNLSGGFSSDPLR 468 Query: 441 LALICESDLLG---ERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMT 497 L ++ +S++ G R R +RT + T L L +G VVH+EHG+ +Y G++ Sbjct: 469 LTILSDSEIFGWQQRRALSTRARKQRTESDRTAF--LQSLKVGDYVVHIEHGIAQYEGLS 526 Query: 498 TLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKA 557 +EA G E+L+L YA+ KLYVPV + +SRY G E L +LG W RA++K Sbjct: 527 RIEASGAEREFLVLRYASGDKLYVPVDQVDRVSRYIGAGEGKPTLTRLGTSDWERAKRKV 586 Query: 558 AEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMC 617 V ++A ELLD+YA R EGFA+ D + DSFP+ T DQ +AI V SDM Sbjct: 587 RADVEELATELLDLYAARQLVEGFAYSSDTSWQRELEDSFPYTETDDQLRAIEEVKSDME 646 Query: 618 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 MDRL+CGDVGFGKTEVA+RAAF AV + +QVAVLVPTT+LAQQH++ F R +P Sbjct: 647 NTRPMDRLICGDVGFGKTEVALRAAFKAVQDGRQVAVLVPTTVLAQQHFETFSRRMQMFP 706 Query: 678 VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVR 737 VRIEM+SRFRSA +Q I + +G+IDI++GTH++L SD+ FK LGL+I+DEE RFGV+ Sbjct: 707 VRIEMLSRFRSASQQKSITERIVKGEIDIVVGTHRILSSDIHFKQLGLVIIDEEQRFGVK 766 Query: 738 HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV 797 KER+K +R +D+LTLTATPIPRT++MA+SG+RDLS+I TPP R+ +KT+V+ Y+ M+ Sbjct: 767 DKERLKKLRHEIDVLTLTATPIPRTMHMALSGIRDLSVIDTPPDDRMPIKTYVQPYNEML 826 Query: 798 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 857 VR+AILRE+ R GQ Y+++N V++I A RL +LVPEARI +GHGQM E+ LE+V+ F Sbjct: 827 VRDAILRELGRNGQAYFVHNRVQSIYTVANRLQKLVPEARIGVGHGQMPEKALEKVILQF 886 Query: 858 HHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP 917 F+V VCTTIIE+GID+P+ANT+II+ A +GLAQL+QLRGRVGRS + YA++ Sbjct: 887 FEGLFDVFVCTTIIESGIDVPSANTMIIDDATTYGLAQLYQLRGRVGRSTQRGYAYMFYN 946 Query: 918 HPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYME 977 KAM +AQKRLEAI +LGAGF +A DLEIRG G LLG EQSG++ TIGF LY Sbjct: 947 PTKAMGEEAQKRLEAIQEATELGAGFRIAMRDLEIRGTGNLLGAEQSGNITTIGFDLYSR 1006 Query: 978 LLENAVDALKAGREPSLEDLTSQQ------------------------------------ 1001 LL AV+ ++ R+ + + +Q Sbjct: 1007 LLSQAVERVREERKRGQQQKSGEQKAQRARAVEALRRAAVVSARSSFSGDADDPVLPDAM 1066 Query: 1002 TEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLL 1061 ++L + + LP +++ D RL Y+ IA A++ ++ ++ EL DRFG +P+PA LL Sbjct: 1067 VSIDLPINAYLPQNYVDDEPLRLRVYQHIAEARSTRDIRMLRQELEDRFGPVPEPAARLL 1126 Query: 1062 DIARLRQQAQKLGI 1075 D+ ++ A + G+ Sbjct: 1127 DLLTIKVLALQAGV 1140 >UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Staphylococcus RepID=C4WBZ1_STAWA Length = 1169 Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/1093 (36%), Positives = 631/1093 (57%), Gaps = 56/1093 (5%) Query: 18 LLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN---LADWE 74 L+ L+ +A AT++AE ++L+ ++ A ++ +I Q+ + + D Sbjct: 28 LVTGLSPSAKATIIAEKYLADQKQMLLVTNNLYQADKIEADILQYVSGEEIYKYPVQDIM 87 Query: 75 TLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 T + + SP ++S R+ TL L ++G+ IVP+N L + + P H + + G Sbjct: 88 TEEFSTQSPQ--LMSERVRTLTALAHGEKGLFIVPLNGLKKWLTPVEMWRNHQMTLNVGD 145 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPM-GSELPYRLDFFDDEIDSLR 193 + D +L + GYR V GE++ RG ++D++P+ GS P R++ FD EIDS+R Sbjct: 146 DIDVDDFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIGS--PVRIELFDTEIDSIR 203 Query: 194 VFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE---------VKRDPEHI 244 FDV++QR+ + +E++++ A ++ I ++Q + +E V+ D + Sbjct: 204 DFDVETQRSNDNLESVDITTASDYIITDEVISHLQTQLKAAYEDTRPKIEKSVRNDLKET 263 Query: 245 YQQVSKGTLPAGIEYWQPLFFSEPL------------PPLFSYFPANTLL-VNTGDLETS 291 Y+ + ++ FF L + YF + ++ V+ + Sbjct: 264 YE---------SFKLFESTFFDHQLLRRLVAFMYDQPSTIIDYFANDVVIAVDEYNRIKE 314 Query: 292 AERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWP--RVQLKTEHLPTKAA 349 E + F + ++ + QS +++ D + L P L T +P + Sbjct: 315 TEETLTTEVDDFISNLIESGNGFI-GQS-FMQYDGFETLLDERPVAYFTLFTSSMPVELD 372 Query: 350 NANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAP 409 + + F P Q ++F+ D +V VE+E + E + +L + I Sbjct: 373 HI-IKFSCKPVQQFYGQYDIMRSEFQRFIHN-DYAIVVLVETETKVERIQSMLNEMHIPV 430 Query: 410 QRIMRLDEASDRGRYLMI-GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPD 468 + +D+AS G+ +++ G+ GF L +I E +L + ++R+ ++ N + Sbjct: 431 --VTHIDQASTSGQAVVVEGSLSEGFELPYMQLVVITERELFKTKQKKQRKRTKTMSNAE 488 Query: 469 TLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHL 528 I++ +L++G VVH+ HGVGRY G+ TLE G +Y+ L Y +L+VPV + Sbjct: 489 K-IKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGEQHRDYIKLQYKGTDQLFVPVDQMDQ 547 Query: 529 ISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDRE 588 + +Y +++ L+KLGG W + + K + V D+A EL+D+Y QR G+ F D E Sbjct: 548 VQKYVASEDKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKQREMSVGYQFGPDTE 607 Query: 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 + F FP+E TPDQ+++I + DM + MDRL+CGDVG+GKTEVA+RAAF AV Sbjct: 608 EQSTFELDFPYELTPDQSKSIEEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKAVME 667 Query: 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 708 KQVA LVPTT+LAQQHY+ +R ++PV I++ISRFRS KE + + G +DI++ Sbjct: 668 GKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLISRFRSTKEVKETKEGLKSGYVDIVV 727 Query: 709 GTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMS 768 GTHKLL D+ +KDLGLLIVDEE RFGVRHKERIK ++ NVD+LTLTATPIPRTL+M+M Sbjct: 728 GTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKNNVDVLTLTATPIPRTLHMSML 787 Query: 769 GMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAER 828 G+RDLS+I TPP R V+T+V E ++ ++EA+ RE+ R GQV+YLYN V++I + E+ Sbjct: 788 GVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKREQ 847 Query: 829 LAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 L L+P+A IA+ HGQM ER+LE M F + +++LV TTIIETG+D+P ANT+IIE A Sbjct: 848 LQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLIIEEA 907 Query: 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATH 948 D FGL+QL+QLRGRVGRS YA+ L P K + A++RL+AI +LG+GF +A Sbjct: 908 DRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKIAMR 967 Query: 949 DLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGRE--PSLEDLTSQQTEVEL 1006 DL IRGAG LLG++Q G ++++GF LY ++LE AV+ + +E P + D+ EVEL Sbjct: 968 DLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETPDVPDV-----EVEL 1022 Query: 1007 RMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARL 1066 + + LP ++I + ++ YK++ ++E +L +IK ELIDRF P LLDI + Sbjct: 1023 NLDAYLPAEYIQNEQAKIEIYKKLRKVESEEQLMDIKDELIDRFNDYPTEVERLLDIVEI 1082 Query: 1067 RQQAQKLGIRKLE 1079 + A GI K++ Sbjct: 1083 KTHALHAGITKIK 1095 >UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71 Tax=Streptococcaceae RepID=A2RH86_LACLM Length = 1180 Score = 693 bits (1789), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1107 (37%), Positives = 632/1107 (57%), Gaps = 71/1107 (6%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNLADW 73 E+ LL L+G A + ++A E A +++ +A L+DE+S ++ V Sbjct: 24 ERTLLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELYDELSTLLGEEKVFQFFSD 83 Query: 74 ETLPYDSFSPHQDIISSRLSTL-YQLPTMQRGVLIVPVNTLMQRV-CPHSFLHGHALVMK 131 + + + +D I+ RL L + L G L+VP L + P +FL + L++ Sbjct: 84 DNIYAEFALASKDRIAYRLEALNFLLDERATGFLVVPFLALRSYLPAPENFLENY-LLLT 142 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 G L L AGY +VM GE++ RG ++D++P+ +E P RL+FF DE+D+ Sbjct: 143 SGDEYDLSNLVNLLSKAGYEKTQRVMTPGEFSMRGDIVDIYPLDAENPVRLEFFGDEVDT 202 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEF-----PTDKAAIELFRSQWRDTFEVKRDPEHIYQ 246 +R FDV+SQR+L +E + + PA +F DK A L ++ + + + + Sbjct: 203 IRSFDVESQRSLTSLERLEIYPASDFILTDNEFDKGAKSL--TEMTNLLG-DQTSLSVSE 259 Query: 247 QVSKG---TLPAGIEYWQPL------------------FFSEPLPPLFSYFPANTLLV-- 283 Q G T P+ Y + + +F + L +YFP N + Sbjct: 260 QARNGSAMTDPSAKSYMEEVISAAQNHYYHKDLRKFAEYFYDKKTSLLNYFPKNVQIFID 319 Query: 284 ---NTGDLETSAERFQADTL--ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQ 338 ++ E AD + + RG + LL + ++++N+ Sbjct: 320 DFQKVNEMNNKLEMELADFILSEKAMERGFEGQTYLL----------DTMAKVRNYKPAT 369 Query: 339 LKTEHLPTKAANANLGFQKLPDLAVQAQQK--APLDALRKFLETF---DGPVVFSVESEG 393 + + NL F++L + + Q+ L+ +E F + VV +V SE Sbjct: 370 FFSNF---QKGLGNLRFEQLYNFKQHSMQQFFGQLELFYTEVERFIKQEFTVVLAVSSEK 426 Query: 394 RREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAA-EHGFVDTVRNLALICESDLLGE 452 R++L EL ++ Q + R E+ G+ +I +GF L ++ E ++ G+ Sbjct: 427 LRKSLHEL----DLSLQEVDR--ESIQVGKVNLIDLQLSNGFNFLDEKLVVMTEQEIFGK 480 Query: 453 RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLT 512 R+++ + I +++ EL +G VVH HG+G+Y G+ TLE GG+ +YL + Sbjct: 481 --MRKKKARKLNITNAERLKDYNELAVGDFVVHKNHGIGKYLGLQTLEVGGMHRDYLTIQ 538 Query: 513 YANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIY 572 Y N + VPV L L+S+Y G ++ ++KL W + +++V D++ +L+ +Y Sbjct: 539 YQNGDTISVPVDHLDLLSKYTAGEGKSPKINKLNDGRWRKTMSSVSKQVEDISDDLIKLY 598 Query: 573 AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632 A+R AK+GFAF D + F F + T DQ ++IN + DM MDRL+ GDVGF Sbjct: 599 AERQAKKGFAFSPDDASQEEFDSGFSYVETEDQIRSINEIKHDMELERPMDRLLVGDVGF 658 Query: 633 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ 692 GKTEVAMRAAF A+++ KQVAVLVPTT+LA+QH++NF +RF N+ V +E++SRF++ +Q Sbjct: 659 GKTEVAMRAAFKAINDGKQVAVLVPTTVLAEQHFNNFTERFINFGVNVEVLSRFQTKTQQ 718 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 T+ILA++ +G++D++IGTH+LL DV+F DLGL+I+DEE RFGV+HKER+K ++ VD+L Sbjct: 719 TEILAKLKKGRVDLIIGTHRLLSKDVEFFDLGLMIIDEEQRFGVKHKERLKELKTQVDVL 778 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 TLTATPIPRTL+M+M G+RDLS+I TPP R V+T+V E + VVR+AILREI RGGQV Sbjct: 779 TLTATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVMETNYGVVRDAILREISRGGQV 838 Query: 813 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 YY+YN V+ I++ +L EL+PEARI HGQM E +LE + F ++VLV TTIIE Sbjct: 839 YYVYNRVDTIEQKVSQLEELIPEARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIE 898 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 TG+DIP +NT+ IE AD GL+QL+QLRGRVGRS+ AYA+ + K ++ ++KRLEA Sbjct: 899 TGVDIPNSNTLFIENADMMGLSQLYQLRGRVGRSNRVAYAYFMYRPEKILSEVSEKRLEA 958 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP 992 I +LG+GF +A DL IRGAG LLG EQSG ++++GF LY +LLE A+ K G Sbjct: 959 IKGFTELGSGFKIAMRDLSIRGAGNLLGSEQSGFIDSVGFDLYSQLLEEAIHT-KLG--T 1015 Query: 993 SLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGL 1052 S + TS E+ L + + +P +I D ++ YKRI + EE++ EL+DRFG Sbjct: 1016 SKQKRTS-NVEISLELDAFIPAYYISDERQKIEIYKRIRQIDSREIYEELQEELVDRFGE 1074 Query: 1053 LPDPARTLLDIARLRQQAQKLGIRKLE 1079 PD LL+I L+ A + K+E Sbjct: 1075 YPDEVAYLLEIGLLKHFADNALVEKIE 1101 >UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Firmicutes RepID=C8NI79_9LACT Length = 1180 Score = 693 bits (1788), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1106 (36%), Positives = 643/1106 (58%), Gaps = 51/1106 (4%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWE 74 E +L+ L+G+ + E+ +V++ P + A + ++E+S++ D+ +++L E Sbjct: 25 ESQLVLGLSGSVKHLAESCAFEKLDKQLVIVTPTLLQATQTYEELSEWYDEDIVHLFPVE 84 Query: 75 -TLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKG 133 +L D D++S R+ TL L Q+G++IVP++ + + + P + ++ + G Sbjct: 85 ESLAADFSVVSPDVVSQRIRTLDFLSRGQKGIVIVPLSGIQKLLVPAALWKKSSIELAMG 144 Query: 134 QRL-SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 + S DA +L GYR + V GE+A RG+++D++P+ E P RLDFFD E+DS+ Sbjct: 145 SEIESMDAFVERLVELGYRRENMVATPGEFALRGSIVDIYPLDQEYPLRLDFFDTEVDSI 204 Query: 193 RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQ----WRDTFEVKRDPEH----- 243 R F+ ++QR+++ +E + +LPA + P K A+ +++ + + + PE Sbjct: 205 RAFNAETQRSMDVIEEVRILPATDLPLQKEAVWKAQTKIHALYDKDVKSSQSPERRDQVS 264 Query: 244 -----IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV---------NTGDLE 289 I Q+ G +P+ + Y+ + E L Y + L+ + LE Sbjct: 265 SIQQAIDAQLENGEIPSNLPYFLECIYPEK-TSLLDYVSKDAYLIIDDYARFIEKSKSLE 323 Query: 290 TSAERFQA---DTLARFENRG-VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLP 345 A ++ +T A V R LL L +F K R+ L H P Sbjct: 324 EEAGYWKTHHIETGAIASGLSLVQDGRKLLKESPLKRTYLAIFQ--KGLGRLSLDAIH-P 380 Query: 346 TKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARI 405 F ++P + V+A D +K T V+ V+ R + + + A Sbjct: 381 ITTRTMTQFFSQMPMVKVEA------DRWKKQGAT----VIVLVDDAKRAQKVEQTFADF 430 Query: 406 KIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTI 465 I + ++ + +M+G +GF A++ E +L ++ +R +++ Sbjct: 431 DI--KSVISNGTVLEGQLQIMVGKMHNGFELPEDKFAILTERELFN-KLTKRAPRNQKIS 487 Query: 466 NPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSS 525 N + L ++ EL +G VVH+ HGVG Y GM TLE GGI +Y+ + Y + L+VPVS Sbjct: 488 NAERL-KSYTELAVGDYVVHVNHGVGVYQGMETLEIGGIHQDYMSIHYQDGGNLFVPVSQ 546 Query: 526 LHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKH 585 + L+ +Y + L+KLGG W++ ++K A K+ D+A EL+++YA+R A++G+AF Sbjct: 547 IKLVQKYVSSDAKVPKLNKLGGTEWAKTKRKVAAKIEDIADELIELYAKRDAEKGYAFSR 606 Query: 586 DREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA 645 D + Q F +FP+ T DQ +++ + DM + MDRL+ GDVG+GKTEVAMRA F A Sbjct: 607 DTVEQQEFEQAFPYTETQDQLRSVAEIKEDMQKDKPMDRLLVGDVGYGKTEVAMRAVFKA 666 Query: 646 VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID 705 V + KQ AVLVPTT+LA+QHY+NF RF+++P +I ++SRFRS KEQ + + ++ +G +D Sbjct: 667 VMDGKQAAVLVPTTILAEQHYENFVQRFSDYPFKIGLLSRFRSKKEQEETIKKLRKGSVD 726 Query: 706 ILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNM 765 I+IGTH+LL DV+F DLGLLIVDEE RFGV+HKER+K +++ VD+LTLTATPIPRTL+M Sbjct: 727 IVIGTHRLLSKDVQFLDLGLLIVDEEQRFGVKHKERLKQLKSQVDVLTLTATPIPRTLHM 786 Query: 766 AMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKA 825 +M G+RDLS+I TPPA R V+TFV E + M +R+ I RE+ RGGQV+YLYN VE I+K Sbjct: 787 SMLGVRDLSVIETPPANRYPVQTFVMEQNPMTIRDGIEREMARGGQVFYLYNRVETIEKK 846 Query: 826 AERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 885 A+ L LVP R+ + HGQM E LE ++ F ++VLV TTIIETG+DIP NT+ I Sbjct: 847 ADELRVLVPGCRVGVIHGQMSETTLENILFQFIEGEYDVLVTTTIIETGVDIPNVNTLFI 906 Query: 886 ERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFAL 945 E AD+ GL+QL+QLRGRVGR++ AYA+L+ K +T ++KRL+A+ +LG+GF + Sbjct: 907 ENADYMGLSQLYQLRGRVGRTNRIAYAYLMYQPDKVLTEVSEKRLQAMRDFTELGSGFKI 966 Query: 946 ATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVE 1005 A DL IRGAG LLG++Q G ++++GF LY +LL AV K G+E ++ T E++ Sbjct: 967 AMRDLSIRGAGNLLGKQQHGFIDSVGFDLYSQLLSEAV-LKKQGKEVKSDEET---VEID 1022 Query: 1006 LRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIAR 1065 L++ + +P +I D ++ YKRI S + EE+ + IDRFG PD L ++ Sbjct: 1023 LQIDAYIPASYIQDERQKIEMYKRIRSIDSVEAYEELLDDFIDRFGDFPDEVSALAEVGL 1082 Query: 1066 LRQQAQKLGIRKLEGNEKGGVIEFAE 1091 ++ A ++ ++ + I A+ Sbjct: 1083 IKHYANEINAVSIKRKDNSVTITIAQ 1108 >UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3P0_NATTJ Length = 1196 Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/1099 (34%), Positives = 630/1099 (57%), Gaps = 38/1099 (3%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMNL 70 K ++++ ++G+ ++A + + P+ LI D A L+ ++ D + V Sbjct: 26 KRSTKQMVSGISGSEFPLILAGLFRAYGRPITLITYDNYRAESLYSDLVTLLDKEQVYIY 85 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVM 130 + + P++ +D+ + R L + + + V I + + +++ P + L + Sbjct: 86 PEHQVYPFELAWQSRDVNNERAQVLQAMLSKKSAVYIFSLKSAKEKLSPAQVVKQTFLNL 145 Query: 131 KKG-QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 + G ++LS + +L GY + V + G+++ RG ++D+FP+ SELP R++FFDDEI Sbjct: 146 EVGNEKLSPTMIAEKLTGLGYENTSMVEQKGQFSHRGGIIDVFPVASELPVRIEFFDDEI 205 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPT-DKAAIELFRSQWRDTFEVKRD-------- 240 +S+R FD+ +QR+L+E ++ + P + D + +Q FE+++ Sbjct: 206 ESIRAFDLATQRSLKEYNSLVVGPGSQLVIGDNTNLSQALNQLTREFELQKGKLMKDGIT 265 Query: 241 --PEHIYQQVSK--GTLPAGIEY-----WQPLFFSEPLPPLFSYFPANTLL-VNTGDLET 290 E + +++++ +L GI + F+ + + + P N+L V+ + Sbjct: 266 DRSEELEERINRDLSSLENGISLPHFHRYLSYFYPKNYGTIIDFLPTNSLFWVDEPNRIK 325 Query: 291 SAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSEL---KNWPRVQLKTEHLPTK 347 ++ F + + ++ + L +L+ ++++ S + L+ Sbjct: 326 ESDEFYNNEITELAESLIEEGKILPGESNLFYSIEDVLSGNPFDTIYSANFLRQNPFENV 385 Query: 348 AANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKI 407 + N+ + + Q L +++++ ++FS E R L E L + +I Sbjct: 386 SQATNMSVKSMNQFY--GQWDFFLKEMKQWMNNNYRIILFSPTPESAR-TLYENLKKEEI 442 Query: 408 APQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR-RTIN 466 + + + ++ + +G + GF+ LA+I DL G + + R R ++ + Sbjct: 443 GATIVEKGNTKTENQVVIAVGDLKSGFILQESKLAVITYGDLWGHQKKKIRSRKRDKSED 502 Query: 467 PDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSL 526 + + EL + VVH +HG+G+Y G+ TLE GG+ +YL + YA + LYVP + Sbjct: 503 KAVKVSDYRELQVEDYVVHEKHGIGKYMGIKTLEVGGLYKDYLHIKYAGNDSLYVPTEQI 562 Query: 527 HLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 I +Y G + L+ LG W + +Q+ V+++A +LL +YA+R++++G+AF D Sbjct: 563 DEIQKYVGKEGKPPKLYSLGSSEWQKVKQRVKSSVKELAEDLLKLYAERSSRKGYAFSQD 622 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 + F D FP+E TPDQ +AI+ + D+ MDRL+CGDVG+GKTEVAMRAAF AV Sbjct: 623 TPWQKEFEDYFPYELTPDQKKAISEIKEDLESEQPMDRLLCGDVGYGKTEVAMRAAFKAV 682 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 KQV VLVPTT+LAQQH+ F++RFA +PV I +ISRF S K++ + E+ EG +I Sbjct: 683 MEGKQVCVLVPTTILAQQHFQTFKERFAPYPVDIRVISRFSSQKDEKLVKEEMKEGNAEI 742 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 +IGTHKLL VKF+DLGLLI+DEE RFGV+HKE+IK ++ N+D+LT+TATPIPRTL+M+ Sbjct: 743 IIGTHKLLNKSVKFRDLGLLIIDEEQRFGVQHKEKIKMLKKNLDVLTMTATPIPRTLHMS 802 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 + G+RDLS+I TPP R V+T+V E+ ++REA+ REI R GQVY ++N V+ I K A Sbjct: 803 LVGVRDLSVIETPPEGRFPVQTYVMEHSPQLIREAVNREISREGQVYVVHNRVKGINKVA 862 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 + +A+ VP+A++ + HGQM E++LERVM DF+ +++VLV T+I+E G+DI NTIII Sbjct: 863 KEVADWVPDAKVGVAHGQMPEKQLERVMLDFYEGKYDVLVSTSIVEAGLDIQNVNTIIIY 922 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 AD GL+Q +QLRGRVGRS+ AYA+L K +T +A+KRL+AI +LG+GF LA Sbjct: 923 NADRMGLSQPYQLRGRVGRSNRMAYAYLTYQKDKVLTQEAEKRLKAIKEFTELGSGFKLA 982 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ------ 1000 DLEIRGAG +LG EQ G + +GF +Y ++L++A+ + + E Q Sbjct: 983 LRDLEIRGAGNILGPEQHGHIMAVGFDMYTKMLKDAIKEISQESQTQEETTKIQDDKTEV 1042 Query: 1001 ----QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDP 1056 + +VEL + + LP +I D +++ YK+ S + +E +++ EL DRFG LP Sbjct: 1043 EKPEEVKVELNINAYLPTTYISDHEQKITIYKKARSINSYSEANDLETELKDRFGSLPQE 1102 Query: 1057 ARTLLDIARLRQQAQKLGI 1075 + LLDI RL+ A++ GI Sbjct: 1103 VKNLLDITRLKVLARETGI 1121 >UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIY9_9FIRM Length = 1177 Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust. Identities = 420/1152 (36%), Positives = 640/1152 (55%), Gaps = 69/1152 (5%) Query: 9 LPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLH-DEISQFTDQMV 67 L VK+ Q + G L +A L+A + PV+++ PD +A R++ D +S F D+ V Sbjct: 22 LKVKSRYQLVYG-LDESARTMLMAALRLHTDRPVLIVTPDQTHAGRIYEDMLSVFKDEDV 80 Query: 68 MNLADWETLPYDS-FSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGH 126 E L Y + FS D + R++ + +L V++ V+ ++ ++ P + Sbjct: 81 YLFPGKELLYYSNLFSESGDAAAQRIAAMKRLARGDNIVVVATVSAMVTKMPPFAPWQEA 140 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 ++ + D L +L GY V+ V G+ + RG ++D++P G PYR++FF Sbjct: 141 CFTLRPDDDIPIDELLGKLVDGGYERVEMVDVQGQVSVRGGIVDIYPAGEPYPYRIEFFG 200 Query: 187 DEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT---------------DKAAIELFRSQW 231 + +DS+R FD +SQR+ E V+ + L PA E D E Sbjct: 201 ETVDSIRRFDPESQRSRERVDLLELTPARELVVTAAERKNALSALAKEDAKLSEQLAKGV 260 Query: 232 RDTFEVK---RDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTG 286 R E K R EH+ + + P +Y L+F + + YFP NTLL Sbjct: 261 RTEAEGKLQERLAEHMEKIREEVYFPGMEQYL--LYFYDQAAKITDYFPDNTLLFIDEPQ 318 Query: 287 DLETSAERFQ---ADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEH 343 E +AE+ + + +G P R S + L ++L + ++H Sbjct: 319 RCENTAEQLVREIGEMQSTLFAQGDLPARSADMVWSYKSLLANLLTQLVAFSLFAHSSDH 378 Query: 344 LPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFD-------------GPVVFSVE 390 P + + +L + +P KFL +D VV Sbjct: 379 HPYRRS-VSLSAKPVP----------------KFLGQWDLFGEEVGQWRRQGYRVVILTS 421 Query: 391 SEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLL 450 S R + E+LA I + + + R L+ G+ E GFV L L+ E D+L Sbjct: 422 SRQRSTGIVEVLAEKNIPAHYTLSEPDLAQRSVTLLHGSLESGFVLPEIKLVLLTEQDIL 481 Query: 451 GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLM 510 ++ +RR + + + + EL +G VVH +HG+G+Y G+ TL+ GG +YL Sbjct: 482 PQKKKKRRIKGKEGVR----VGDYQELQVGDFVVHEQHGIGQYLGLRTLDVGGTQRDYLY 537 Query: 511 LTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLD 570 + Y+ + KLY+P+ + ++ +Y G + + LGG WSR + + V+++A ELL Sbjct: 538 IQYSGNDKLYIPIEQIDVVRKYIGVEGKKPKMSALGGGEWSRVKARVQASVQELAKELLA 597 Query: 571 IYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDV 630 +YA R + G AF D + F +FP+E TPDQ QAI V DM + DRL+CGDV Sbjct: 598 LYAARETEPGHAFSPDHSWQKDFEAAFPYEETPDQLQAIAEVKQDMEKSTVTDRLLCGDV 657 Query: 631 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAK 690 G+GKTEVA+R AF AV + KQ A LVPTT+LAQQHY NF +R +PV + ++SRF+S Sbjct: 658 GYGKTEVALRGAFKAVMDDKQAAFLVPTTVLAQQHYHNFVERLEGFPVNVGILSRFQSPA 717 Query: 691 EQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVD 750 EQ + + + EG ID+++GTH++L D++F+DLG L+VDEE RFGVRHKERIK ++ N+D Sbjct: 718 EQKETIKGLKEGTIDLVVGTHRILSKDIRFRDLGFLVVDEEQRFGVRHKERIKMLKKNLD 777 Query: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGG 810 +LT+TATPIPRTL+M++ G+RD+S+I TPP R ++T+V EY ++REA++RE+ RGG Sbjct: 778 VLTMTATPIPRTLHMSLVGVRDMSVIETPPEDRYPIQTYVLEYSDALIREAVMRELNRGG 837 Query: 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 870 QVY+++N V++I + A +L EL+PE R+A+ HGQM E LE+VM F ++VL+ TTI Sbjct: 838 QVYFVHNRVQSINRWAAKLQELMPEVRLAVAHGQMPEDRLEKVMMGFLEGEYDVLLSTTI 897 Query: 871 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRL 930 +E G+DIP NTIII+ AD FGLAQL+QLRGRVGRS+ AYA+L K +T A+KRL Sbjct: 898 VEAGLDIPNVNTIIIQDADKFGLAQLYQLRGRVGRSNRIAYAYLTYQKDKVLTEVAEKRL 957 Query: 931 EAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGR 990 +AI +LG+GF +A DLEIRGAG +LG EQ G M +GF LY++LLE+A+ K Sbjct: 958 QAIKEFTELGSGFKIAMRDLEIRGAGNILGPEQHGFMMAVGFDLYVKLLEDAIRTYKGQE 1017 Query: 991 EPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRF 1050 E T Q+ +E++ + LP +I D ++ FY+++A+ ++ ++ E K EL DR+ Sbjct: 1018 ED-----TRQEPRIEIQADAYLPASYISDARQKIVFYQKVAAVESVEQVLEAKEELCDRY 1072 Query: 1051 GLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQH 1110 G LP A LL++A ++ A++L + + EKG + K+ L+ L KQ + Sbjct: 1073 GPLPAAAENLLNVAHVKLLARELYVSSV-SEEKGEIQIRFTKDFTLSGDLLLKLSKQFKG 1131 Query: 1111 YRLDGPTRLKFI 1122 RL T +FI Sbjct: 1132 -RLTAGTGKQFI 1142 >UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE5_DESAA Length = 1179 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/1164 (34%), Positives = 644/1164 (55%), Gaps = 48/1164 (4%) Query: 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM------- 66 G LG L ++ A +A++ V+++AP + A L ++ F + Sbjct: 24 GPVECLG-LERSSQAYFIAQLFREKKRTVLVLAPTKKEAKTLCADLDFFLQDLKQPESAL 82 Query: 67 -----VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLM-QRVCPH 120 ++ + LP+ S H + ++R+S L ++ ++V M R+ P Sbjct: 83 PGQGWILEFPAYHILPFKGISYHTETAANRISALSRMANSPDPAIVVTTPQAMASRLIPK 142 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 S L+ ++ G+ L RDA +L S GY V E G++ RG+++D++ P Sbjct: 143 SALNSFGELIMAGEELDRDAFVEKLVSGGYVKNLIVEEPGDFCVRGSIVDVYGPPYSQPL 202 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R++FF DE+DS+R F +QRT++++E +LPA E K ++ + R+ + Sbjct: 203 RIEFFGDEVDSIRFFSPSTQRTIKKMEEAVILPATEAVVSKDRLQSVIHRVREKAVLADM 262 Query: 241 PEHIYQQVSKGTLPA-----GIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAE-- 293 P ++V +L A GIE + PL + LF Y PA+TL + S E Sbjct: 263 PVTKIREVVD-SLKATQQFPGIEGFVPLLYENGGDSLFDYLPADTLCTVLDPVAASQEYE 321 Query: 294 RFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELK-----NWPRVQLKT-EHLPTK 347 ++ D FE + R +PP L ++ L +P + + + Sbjct: 322 KYLEDVEENFETAQAE-NRLSIPPAMTHLPAEDFRKRLNRARPLTFPTLAVTGPQEEEAG 380 Query: 348 AANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDG-------PVVFSVESEGRREALGE 400 A L + +L + D L K L + +V + S+ + E L Sbjct: 381 KARMQLHVETNTELVQNLKASKERDQLLKPLADWVNDKRDQGYSIVMACGSKMQAERLES 440 Query: 401 LLARIKIAPQRIMR-LDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQ 459 LL + R + S R + +++G+ GFV +LA++ E+++ G + RR+ Sbjct: 441 LLTPYGVGLSRNQNWMTRPSARCQ-VVLGSLSSGFVWPAESLAVVTETEIFGPKHRRRKI 499 Query: 460 DSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKL 519 +++R P T + +LA+L G VVH++HG+ +Y G+ ++ GG+ ++L+L Y + KL Sbjct: 500 ETQR---PRTELLDLAQLSQGDFVVHVDHGIAQYGGLVKMDLGGVANDFLLLEYRDGDKL 556 Query: 520 YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 Y+PV +LI +Y E L KLGG AW + + + + V +A ELL +YA R K+ Sbjct: 557 YLPVDKSNLIQKYRTMGETAPALEKLGGKAWEKVKSRVKKSVEKIAGELLKLYAVRKVKQ 616 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 G+AF + F +F +E TPDQA+AIN VL+DM MDRL+CGDVG+GKTEVA+ Sbjct: 617 GYAFSPTDSYFAEFEANFEYEETPDQAKAINDVLADMENRRPMDRLICGDVGYGKTEVAL 676 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 RA+F AV + KQ A + PTT+L++QHY F R+ +PV+I ++RFR A E+ +IL + Sbjct: 677 RASFKAVSDSKQTAFVTPTTILSEQHYRTFLKRYEGYPVKIACLNRFRKAAEKKEILKGL 736 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 G IDI+IGTH +LQ V+FKDL L+I+DEE RFGV+HKE +K +RA VD+L LTATPI Sbjct: 737 ENGDIDIVIGTHSVLQKSVQFKDLRLVIIDEEQRFGVKHKETLKKIRATVDVLALTATPI 796 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTL+M+M G+RD+++I TPP +R + T+V ++D ++ EAI E+ R GQV++++N V Sbjct: 797 PRTLHMSMVGIRDITVINTPPEQRRPITTYVSKFDEVIAAEAIRAELARKGQVFFVHNRV 856 Query: 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 ++I A RL LVPEAR+ + HGQM E LE+VM F + ++LVCT IIE+G+DIP Sbjct: 857 QSIDAMAGRLKRLVPEARVGVAHGQMSETMLEKVMIKFVNHEIDLLVCTAIIESGLDIPA 916 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 ANTI+I RAD FGLAQ++QLRGRVGR QAYA+L P +T DAQ+RL+ + DL Sbjct: 917 ANTILINRADMFGLAQIYQLRGRVGRGDDQAYAYLFIPDESVLTRDAQRRLKVLMEHSDL 976 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKA-GREPSLEDLT 998 GAGFA+A DL+IRG G +LG QSG + +G+ +Y++L+E A+ LK G P L+ Sbjct: 977 GAGFAIAMSDLQIRGGGTILGSAQSGQIAAVGYEMYLQLMETAIGQLKGEGSAPPLD--- 1033 Query: 999 SQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPAR 1058 E+ + + +P+ +IPDV+ RL Y+R++ + +++ E+ DRFG +P Sbjct: 1034 ---PEINVDFSAFIPEWYIPDVDQRLLAYRRLSRMEKVSDVGAFSKEMQDRFGKVPQETN 1090 Query: 1059 TLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTR 1118 L + + G++K++ K + + ++ N L+ ++++ +RL+ Sbjct: 1091 QLFFKIMFKILCRDAGVKKMDMAGKNLHLVISPEHQRNRDELLYMIKENFPRFRLNTEGV 1150 Query: 1119 LKFIQDLSERKTRIEWVRQFMREL 1142 LK D K R V+ ++E+ Sbjct: 1151 LKVALDTEAVKGRAVAVKNVLKEI 1174 >UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clostridiales RepID=C5EM54_9FIRM Length = 1186 Score = 689 bits (1777), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1102 (37%), Positives = 623/1102 (56%), Gaps = 89/1102 (8%) Query: 30 LVAEIAERHAGPVVLIAP-DMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDII 88 L+ E+ E A P L+ D A ++D+ FT Q+ + A + L + S H +++ Sbjct: 33 LMYELGEGAAFPWKLVVTYDDTRAKEIYDDFRNFTKQVWLYPA--KDLLFYSADIHGNLM 90 Query: 89 S-SRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDS 147 + R++ L L Q GV++ ++ LM + P +L A+ ++ GQ + + R +L + Sbjct: 91 TRQRIAVLRHLMEDQGGVVVTTMDGLMDHLLPLQYLKEQAITVESGQVIDLNVWRQRLTA 150 Query: 148 AGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVE 207 GY + QV G+++ RG ++D+FP+ E+P R++ +DDE+DS+R FD++SQR++E+++ Sbjct: 151 MGYERMAQVDGMGQFSIRGGIIDIFPLTEEVPLRIELWDDEVDSIRTFDLESQRSVEQLD 210 Query: 208 AINLLPAHEFPTDKAAIELFRSQWRD---TFEVKRDPEHIYQQVSK-------------- 250 A+ + PA E DK +E + R T+E +H ++ + Sbjct: 211 AVTIYPAAEVVLDKKQLEAGTDRLRKEAKTYEKALREQHKTEEAHRIHSIIEELADGLRE 270 Query: 251 ----GTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGD-------LETSAERFQADT 299 G L A I Y+ P S YFP +V + ET F+ Sbjct: 271 GWKLGGLDAYIRYFCPDTVS-----FLEYFPKGESVVYLDEPARLREKGETVELEFRESM 325 Query: 300 LARFENRGVDPMRPLLPPQS-LWLRVDELFSELKNWPRVQLK--TEHLPTKAANANLG-- 354 + R E +G LLP Q+ L V+E+ + ++ V L + LP N Sbjct: 326 VHRLE-KGY-----LLPGQTELLYPVEEVMARVQRPLTVMLTGLDQKLPGMKVNHKFSID 379 Query: 355 ------FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELL------ 402 +Q ++ ++ + + R L + + S+ R L Sbjct: 380 VKNVNSYQNSFEILIKDLTRWKKEGYRVILLSASRTRASRLASDLREYGLRAYCPDGAEP 439 Query: 403 ------------ARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLL 450 A K+ P IM + G+ GF + I E D+ Sbjct: 440 EMETGDGREAKDAHPKVKPGEIM-----------VTYGSLHRGFEYPLLKFVYITEGDMF 488 Query: 451 GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLM 510 G V ++++ ++T I++ +EL +G VVH EHG+G Y G+ +E + +Y+ Sbjct: 489 G--VEKKKKRRKKTNYQGKAIQSFSELSVGDYVVHEEHGLGIYKGIEKVERDKVIKDYIK 546 Query: 511 LTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLD 570 + Y + LY+P + L I +YAG + L+KLGG W + + + V+++A +L+ Sbjct: 547 IEYGDGGNLYLPATRLESIQKYAGADAKKPKLNKLGGTEWGKTKTRVKGAVQEIAKDLVK 606 Query: 571 IYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDV 630 +YA R K GF + HD + F + FP++ T DQ AI+AV +DM MDRL+CGDV Sbjct: 607 LYAARQEKAGFQYGHDTVWQREFEELFPYDETDDQMDAIDAVKTDMESRRIMDRLICGDV 666 Query: 631 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAK 690 G+GKTEVA+RAAF AV + KQV LVPTT+LAQQHY+ F R ++PVR++M+SRF + Sbjct: 667 GYGKTEVALRAAFKAVQDSKQVVYLVPTTILAQQHYNTFVQRMKDFPVRVDMLSRFCTPA 726 Query: 691 EQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVD 750 Q + L ++ +G +DI+IGTH++L D++FKDLGLLI+DEE RFGV HKE+IK ++ NVD Sbjct: 727 RQKRTLEDLRKGMVDIVIGTHRVLSKDMQFKDLGLLIIDEEQRFGVAHKEKIKQLKENVD 786 Query: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGG 810 +LTLTATPIPRTL+M+++G+RD+S++ PP R ++T+V EY+ +VREAI RE+ R G Sbjct: 787 VLTLTATPIPRTLHMSLAGIRDMSVLEEPPVDRTPIQTYVMEYNEEMVREAINRELARNG 846 Query: 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 870 QVYY+YN V +I + A R+ LVPEA + HGQMRE ELER+M DF + +VLV TTI Sbjct: 847 QVYYVYNRVTDIDEVANRIQALVPEAVVTFAHGQMREHELERIMADFINGEIDVLVSTTI 906 Query: 871 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRL 930 IETG+DIP ANT+II AD GL+QL+QLRGRVGRS+ +YA+L+ K + +A+KRL Sbjct: 907 IETGLDIPNANTMIIHDADRMGLSQLYQLRGRVGRSNRTSYAFLMYRRDKLLKEEAEKRL 966 Query: 931 EAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGR 990 +AI +LG+G +A DLEIRGAG +LG EQ G ME +G+ LY ++L AV ALK G Sbjct: 967 QAIREFTELGSGIKIAMRDLEIRGAGNVLGAEQHGHMEAVGYDLYCKMLNEAVLALK-GE 1025 Query: 991 EPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRF 1050 +P D S +T VE + + +P +I + +L YKRI++ +TE+E +++ EL+DRF Sbjct: 1026 KP---DEDSYETVVECDIDAYIPSSYIKNEYQKLDIYKRISAIETEDEYMDMQDELMDRF 1082 Query: 1051 GLLPDPARTLLDIARLRQQAQK 1072 G +P LL IA LR A + Sbjct: 1083 GDIPRSVDNLLMIAGLRALAHQ 1104 >UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clostridia RepID=A3DIQ2_CLOTH Length = 1178 Score = 686 bits (1770), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1114 (35%), Positives = 613/1114 (55%), Gaps = 90/1114 (8%) Query: 43 VLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ 102 + IA + A ++ +++S F + + E + +D + D I R++ LY++ Sbjct: 60 IYIAYNEMQARKMFEDVSFFFGKDAVFFPSKEIMLHDVEAKSYDSIYERINALYRIVNDD 119 Query: 103 RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEY 162 G ++ L Q++ + + G R+ +L S GY V V ++ Sbjct: 120 YGFIVTSAEALCQKLIDRKLFKESIVNVALGDRIDLGLFTQKLVSIGYERVTTVEGKSQF 179 Query: 163 ATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHE--FP-- 218 A RG ++D+FP+ ++ R++ FDDE+DS+R FD +QR++E +EA+ +LPA E +P Sbjct: 180 AVRGGIVDIFPVNADTAVRIELFDDEVDSVRSFDTMTQRSVENLEAVTILPARELIYPPG 239 Query: 219 ---------TDKAAIELFRSQWRDT------FEVKRDPEHIYQQVSKGTLPAGIEYWQPL 263 + I++ + + ++ E K + + ++ S+ AG++ + P Sbjct: 240 LRDSIMEKILNDLKIQIKKMEGKNNKSGIQKLEAKINSD--IERFSQEYYFAGMDRYIPY 297 Query: 264 FFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENR-------GVDPMRPLLP 316 +P + Y + L+ D RFE R + + + Sbjct: 298 IIEKP-SAVIDYIDSEILVF-------------VDEPKRFEQRIENLITESNEMCKSFME 343 Query: 317 PQSLWLRVDELFSELKN-WPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALR 375 L ++F + W +V K L F LP + Q++ + + Sbjct: 344 NGQLLAGSFDIFFDCNYLWDKV---------KKCKNTLYFTTLP--SDDGQEEKRENIVS 392 Query: 376 KFLETFDGP-----------------VVFSVESEGRREALGELLARIKIA------PQRI 412 K L ++ G VV ++ R E L E L I P R Sbjct: 393 KLLNSYQGHLEILEEDISHWKKNRARVVILSGTKSRGEMLAETLRTKDIEAVYLEEPHRD 452 Query: 413 MRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIR 472 ++ E + G GF ++ +L G+ RR S + I Sbjct: 453 IQPGEVV-----ITHGVLNRGFEYPGIGFVVVSGKELFGQEKKTRRHKSAKG----KKIS 503 Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 +L++G VVH HG+G+Y G+ L + +YL + Y++ LYVP + L LI +Y Sbjct: 504 VFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKKDYLKIQYSDGDYLYVPTNQLDLIQKY 563 Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 G + L KLGG W++ R + E ++++A EL+++YAQR EG AF D + Sbjct: 564 IGSEGKTPKLSKLGGTDWAKTRARTKESLKELAQELINLYAQREMAEGHAFGKDTVWQKQ 623 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F D FP++ T DQ + I + DM P MDRL+CGDVG+GKTEVAMRA F AV + KQV Sbjct: 624 FEDLFPYQETEDQLRCIEEIKRDMESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMDGKQV 683 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 A LVPTT+LAQQHY+ F++R ++P+ +E++SRFR+ EQ +IL +V G +D+LIGTH+ Sbjct: 684 AYLVPTTVLAQQHYNTFKERMKDFPITVEVLSRFRTQAEQKRILKDVKAGMVDVLIGTHR 743 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 LLQ DV FKDLGLL++DEE RFGV HKE+IK M+ N+D+LTLTATPIPRTL+M++ G+RD Sbjct: 744 LLQKDVCFKDLGLLVIDEEQRFGVTHKEKIKRMKTNIDVLTLTATPIPRTLHMSLVGIRD 803 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 832 +S I PP R V+T+V EY+ VVR+AI RE+ RGGQV+YLYN V I + A + +L Sbjct: 804 ISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRAINQKAAEIQKL 863 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 VPEAR+AI HGQM E ELE +M F + +++LVCTTIIE+G+D+P NTII+E AD G Sbjct: 864 VPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVEDADKMG 923 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 LAQL+QLRGRVGRS+ AYA++ K ++ A+KRL+AI + G+GF +A DL++ Sbjct: 924 LAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAMRDLQL 983 Query: 953 RGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLL 1012 RGAG LLG +Q G ++++G+ +Y +LL AV+ L+ G + ED ++ +++ + + + Sbjct: 984 RGAGNLLGPQQHGHIDSVGYDMYCKLLAEAVNELR-GIPVTKED---EEISIDVNVSAYI 1039 Query: 1013 PDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 +D+I D N ++ YK+IAS E ++ + + EL+DR+G +P P + LL IA ++ A+ Sbjct: 1040 DNDYIGDENQKIDMYKKIASINDEQDVIDAEDELMDRYGEIPQPVKNLLQIAYIKSLAKA 1099 Query: 1073 LGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQK 1106 G ++ + +++E ++N L L+ K Sbjct: 1100 CGFSSVQEKNDTVIFQYSESKNINFEVLGKLMDK 1133 >UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A0K9_DESOH Length = 1174 Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/1105 (37%), Positives = 607/1105 (54%), Gaps = 50/1105 (4%) Query: 9 LPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF----TD 64 L AGE G GA A +V+ I + PV+++ + A R ++ F Sbjct: 17 LETGAGEVVCAGVGKGAD-AFMVSRIGQTLNVPVLVVTASAREAQRFTEDARFFQPADAR 75 Query: 65 QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLP-TMQRGVLIVPVNTLMQRVCPHSFL 123 V + +PY + H + R+ LY + + VL++ V+ L+Q+ P L Sbjct: 76 AEVALFPSYTVMPYRPVAYHNRTAAERIQLLYGMSEGLAPAVLVLAVDALLQKTIPPGDL 135 Query: 124 HGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLD 183 A + +G+ L AL +L + GY V E G+++ RG ++DLF E P R+D Sbjct: 136 CEFAQTVSEGESLDPTALAEKLVAGGYTRTAIVEEPGDFSIRGGIVDLFSPFHEAPARID 195 Query: 184 FFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDK-------AAIELFRSQWRDTFE 236 F D ++S+ F +QR I LLPA E K AA++ ++ Sbjct: 196 LFGDTVESIHFFSPVTQRRGRPTSGITLLPARETVLAKDRIGRLIAAVKKRSAELNLPVS 255 Query: 237 VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAER 294 V RD I ++ +GT G+E PL + P LF Y P TLLV + G + AE Sbjct: 256 VSRD---IIDRMEQGTDTEGMESLMPLVYETP-ATLFDYLPGKTLLVMVDPGMIAEKAEN 311 Query: 295 FQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAA----- 349 +E + R +PP +L+L + E P + LP A Sbjct: 312 HGRLATELYET-AREEGRWCVPPDALYLDWQAVQKEAFKKPLLSFPV--LPVSATPEDGD 368 Query: 350 ------NANLGFQKLPDLAVQAQQK---APLDALRKFLETFDGPVVFSVESEGRREALGE 400 A + L ++ Q + L L ++E G SV + G R + Sbjct: 369 NTPVVETAGVTDNSAVTLMLRTQPRDTDTVLTPLLSWIEENRGLGCVSVIACGGRAQVDR 428 Query: 401 LLARIKIAPQRIMRLDEASDRGR-----YLMIGAAEHGFVDTVRNLALICESDLLGERVA 455 + + LD S GR L+ G GF LA+I ++++ G Sbjct: 429 MAYFLTSHRVPHESLDAFSSMGRGSDTVCLVSGQLSAGFRFAAEGLAVITDTEIFGR--V 486 Query: 456 RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAN 515 R R + + D + +L L G VVH++HG+GRY G+ + GI ++L+L+Y + Sbjct: 487 RHRSSAGKKGARDVYL-DLETLKQGDLVVHVDHGIGRYEGIRKVTVEGIANDFLLLSYRD 545 Query: 516 DAKLYVPVSSLHLISRYAGGAEENAPL-HKLGGDAWSRARQKAAEKVRDVAAELLDIYAQ 574 +LY+ V + + +Y G + APL K+G W R + KA ++ +A ELLD+YA+ Sbjct: 546 GDRLYLSVDRMDMARKYVGADDAEAPLLDKMGAKTWGRVKAKARKEAEKIAKELLDLYAR 605 Query: 575 RAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGK 634 R ++G F + + F F FE T DQ + IN VLSDM MDRLVCGDVG+GK Sbjct: 606 RRVQQGHGFHPPGQWFSDFEAGFDFEETDDQLKVINEVLSDMASSTPMDRLVCGDVGYGK 665 Query: 635 TEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQ 694 TEVAMR++F+ V + QVAVLVPTT+LA+QH+ F RFA +P I +SRF++ Q Q Sbjct: 666 TEVAMRSSFMCVCDGFQVAVLVPTTVLAEQHFATFSRRFAGYPFNIACLSRFKTPARQKQ 725 Query: 695 ILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTL 754 I+A++ EG++DI+IGTH+LL DV FK LGL+I+DEE RFGV+HKE +K MR VD+L+L Sbjct: 726 IVADLKEGRVDIVIGTHRLLSKDVAFKQLGLVILDEEQRFGVKHKETLKKMRTTVDVLSL 785 Query: 755 TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYY 814 TATPIPRTL+M++SGMRD+S+I TPP R A+KT++ E+D ++R AI +E+ RGGQ+Y+ Sbjct: 786 TATPIPRTLHMSLSGMRDISVITTPPEHRKAIKTYISEFDDAIIRTAIRKELERGGQIYF 845 Query: 815 LYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874 ++N++ I A+ L +LVPE R+ I HG++ + LE M F ++ ++LVCT IIE+G Sbjct: 846 VHNNIHKIAFIADHLKKLVPEVRLGIVHGRLDQNTLETCMMQFVNREIDMLVCTRIIESG 905 Query: 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIA 934 IDIP+ANTI I RAD FGLAQ++QLRGRVGRS QAYA+L P A+ DA+KRL+ + Sbjct: 906 IDIPSANTIFINRADMFGLAQIYQLRGRVGRSDEQAYAYLFIPRESALGKDARKRLKVLM 965 Query: 935 SLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSL 994 DLG+GF +A +DL+IRG G LG QSG + +G+ ++++L+E AV LK EP Sbjct: 966 EHSDLGSGFQIAMNDLKIRGGGAALGVSQSGHITAVGYDMFLQLMEQAVAELKG--EPVT 1023 Query: 995 EDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLP 1054 E L E+ + + S L + +I D++ R++ Y+R++ E+ +K EL DRFG LP Sbjct: 1024 ETLNP---EINIPVSSFLSEAYISDIDQRMAIYRRLSRVTETREITAVKTELEDRFGPLP 1080 Query: 1055 DPARTLLDIARLRQQAQKLGIRKLE 1079 A LL L+ A +G+++L+ Sbjct: 1081 AEAENLLLKIMLKTMAAGMGVKRLD 1105 >UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Desulfitobacterium hafniense RepID=B8FZB7_DESHD Length = 1197 Score = 680 bits (1754), Expect = 0.0, Method: Compositional matrix adjust. Identities = 404/1116 (36%), Positives = 627/1116 (56%), Gaps = 36/1116 (3%) Query: 17 RLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETL 76 +++ LTG+ A++ ++ +++ + ++D S + V+ E L Sbjct: 47 QMIYNLTGSQKPAFAAQLIQKGKPGLIITYSEELAQKWVNDLRSWLPGEDVLYFPSSEWL 106 Query: 77 PYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 P++ ++ R+ L +L + ++VP + QR + L +K+G Sbjct: 107 PFEVLGKSRETTIERIRVLNRLAQDNQCTVVVPALAVNQRSFSRRRWQEYILELKEGTSY 166 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 L +L +AGY +D V G++A RG ++D+ P+ E P R++FFDDE+DS+RVFD Sbjct: 167 DLKDLAQKLSTAGYERLDVVDGKGQFAIRGGIMDIAPLDGE-PLRVEFFDDEVDSIRVFD 225 Query: 197 VDSQRTLEEVEAINLLPAHEF---PTD-------------KAAIELFRSQWRDTFE-VKR 239 +++Q++ E ++++ + PA E P + K A L RS D E V + Sbjct: 226 LETQKSTETLKSVKIPPALEVVIRPEELEKLGWEVRAQARKQAGRLNRSGRSDVAEQVMK 285 Query: 240 DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAE-RFQAD 298 + I +++ G + I + L EPL P FS + ++ L + FQ Sbjct: 286 QAQRIEERLKTGRVDESIYPYLSLL-EEPLEPFFSLLSQDHYVILDEPLRLKEQLEFQQK 344 Query: 299 TLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKT--EHLPTKAANANLGFQ 356 + + P+ ++ ++ + P V + T +P A Sbjct: 345 ERLEEYTQALAKGEEFYSPEDQFVSYEQFLRYGEKHPFVLISTLPREIPGVAPKRIFNLN 404 Query: 357 KLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD 416 P + +D + + ++ +F + E L L R +A + + + Sbjct: 405 ARPLTGFMGKTGILVDEIEHWQKSGHIVNLFVGDEEHAERMLQGLRDRGALAKKHELH-E 463 Query: 417 EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNL-- 474 + G Y+ + + GF + L ++ E+++ R+ +R P+ + L Sbjct: 464 PVQEGGVYVYSSSLDQGFELPLSKLIVLSEAEIYKRE---RKAAVKRKKAPEKTGQRLQF 520 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG 534 A+L G VVH+ HG+G++ G+ + GG+ +Y + YA KLYVP+ L+ + +Y G Sbjct: 521 ADLKPGDFVVHVHHGIGQFMGIERIAVGGVEKDYFSVKYAGQDKLYVPLDQLNFLQKYLG 580 Query: 535 GAEENAP-LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 E P L+KLGG W + + KA ++++A +L+ +YAQR A +G+AF D Q F Sbjct: 581 SDAETLPKLYKLGGSEWKKVKAKAKSAIKEMAFDLVKLYAQREATKGYAFSPDNVWQQEF 640 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 + FP++ TPDQ Q I V DM + MDRL+CGDVG+GKTEVA+RAAF AV + KQVA Sbjct: 641 EEKFPYQETPDQMQCIVEVKQDMMRQRPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVA 700 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 VLVPTT+LAQQH++ F++RF +PV I+M+SRFRSAKEQ IL + EG IDI++GTHKL Sbjct: 701 VLVPTTILAQQHFNTFQERFMGYPVSIQMLSRFRSAKEQKLILQGLKEGSIDIVVGTHKL 760 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 + +KFKDLGLLIVDEE RFGV HKE++K ++ANVD+LTL+ATPIPRTL+M++ G+RDL Sbjct: 761 VSDSIKFKDLGLLIVDEEQRFGVAHKEKLKTLKANVDVLTLSATPIPRTLHMSLVGVRDL 820 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 SII TPP R V+T+V E+ VVREAI REI RGGQV++++N VE++++ L++LV Sbjct: 821 SIIETPPEDRFPVQTYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDMEQVVHFLSQLV 880 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 PEAR I HGQM E+ELE+ M F +VLVCTTIIETG+D+P NT+II+ AD GL Sbjct: 881 PEARYGIAHGQMSEKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTLIIDEADRLGL 940 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 QL+QLRGRVGRS+ +AY++ L K +T A+KRL AI + G+G +A DLEIR Sbjct: 941 GQLYQLRGRVGRSNRRAYSYFLYKPQKVLTEVAEKRLAAIREFTEFGSGLKIAMRDLEIR 1000 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGR-EPSLEDLTSQQTEVELRMPSLL 1012 GAG L+G +Q G + +GF LY ++L+ AV LK + E +E T +E+++ + L Sbjct: 1001 GAGNLIGAQQHGHLAALGFELYSQMLKEAVQELKGEQVEEKIE------TSIEVQVDAYL 1054 Query: 1013 PDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 PD +I + + + Y+R+ + E +L + ELIDRFG P LL I R++ A Sbjct: 1055 PDIYIGERQLKAALYQRMVAIDNEEDLSMMIDELIDRFGTPPREVENLLKIVRIKWMASG 1114 Query: 1073 LGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQP 1108 + I +++ ++ V FA ++ L+ + + P Sbjct: 1115 MKIEQIQQLKQQMVFRFAADPGISGEMLMTMATQSP 1150 >UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 Length = 1173 Score = 678 bits (1749), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/1108 (34%), Positives = 633/1108 (57%), Gaps = 39/1108 (3%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSF 81 L+ ++ + L+ + + P ++I A +L++++ + Q V E + Y+ Sbjct: 35 LSESSRSYLIYAVYNQQDKPFLIITHSDVEARKLYEDLCFYLPQ-VYYFPTKEVVFYNID 93 Query: 82 SPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDAL 141 + D+ RL + ++ + ++I V +L P + + G ++ + Sbjct: 94 AISGDLRWERLKVIREMLNPGKKIIITCVESLASVYVPVELYKNYIFKISVGDKVDFKNI 153 Query: 142 RTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR 201 +L GY ++ V G+++ RG ++D++ S+ PYR++ F DE++S+R F+++SQR Sbjct: 154 SEKLIQCGYERMEMVERRGQFSIRGGIMDIYSPISQEPYRVELFGDEVESIRNFNLESQR 213 Query: 202 TLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF-----EVKRDPEHIYQQVSKGTLPAG 256 ++E++ I + A E D+ IE+ +S+ ++ ++K + + + K Sbjct: 214 SIEKMNNIEIFAAKEIIFDRERIEIGKSKIKEDLASIIEKLKENKNNEGMEKIKTITNKN 273 Query: 257 IEYWQPLFFSEPLPPLFSYFP---------ANTLLVNTGDLETSAERFQADTLARFEN-R 306 +E Q + E + YF A V D++ + + + EN + Sbjct: 274 LETLQETWTFESIDSFLPYFYEHTSSFLDYAKNYFVIVDDIKRCSGKLDSVYFEFLENYK 333 Query: 307 GVDPMRPLLPPQS-LWLRVDELFSELKNWPRVQL-----KTEHLPTKAANANLGFQKLPD 360 +LP QS + L EL E + + L T+ LP K + F ++ Sbjct: 334 NFLERGNVLPGQSKMLLDRSELIDEFNHREIIILDAIAKSTKILPPKLI---VNFTQITL 390 Query: 361 LAVQAQQKAPLDALR-KFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEAS 419 Q + + ++ ++ K ++F ++ + G R L + L I ++E Sbjct: 391 NNYQGKLELLIEEIKHKKSKSFKILILSGTRARGER--LVDTLRDNGIESSYRDVVNEIK 448 Query: 420 DRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHI 479 + G GF +++I + ++ G+ A+R+ + + I++ EL Sbjct: 449 PGEVVITFGNQLKGFEYPEIKISVISDKEVFGK--AKRKNIRKTNKKGTSKIKSFTELKP 506 Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G +VH+ HG+G Y G+ LE G +YL L Y + KLYVPV L ++ +Y G +N Sbjct: 507 GDFIVHVNHGIGVYKGIKQLELQGHKKDYLELVYECEDKLYVPVEQLDMVQKYIGSEGKN 566 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599 ++KLG WS+ ++KA + + ++A +L+ +YA R+ +G+ + D + F D FP+ Sbjct: 567 PKINKLGSSEWSKVKKKAKKSIEEMAEDLIKLYAIRSTLKGYKYSKDTIWQKQFEDEFPY 626 Query: 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 659 E TPDQ I + DM MDRL+CGDVG+GKTEVA+RAAF AV + KQVA LVPTT Sbjct: 627 EETPDQLSTIQDIKMDMESDKVMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTT 686 Query: 660 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVK 719 +LAQQHY+NF RF+++PV+I+MISRF++A +Q + V G +D+LIGTH++LQ DV+ Sbjct: 687 ILAQQHYNNFIQRFSDFPVKIDMISRFKTAAQQKATIKAVKIGDVDVLIGTHRILQKDVQ 746 Query: 720 FKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 FKDLGLLI+DEE RFGV HKE+IK +R NVD+LTL+ATPIPRTL+M++ G+RD+S+I TP Sbjct: 747 FKDLGLLIIDEEQRFGVSHKEKIKQIRKNVDVLTLSATPIPRTLHMSLVGVRDISVIETP 806 Query: 780 PARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 839 P R ++T+V EY+ ++R+A+LRE+ RGGQVY++YN VENI++ A +A+L+PE ++A Sbjct: 807 PDERYPIQTYVVEYNDQLIRDAVLRELSRGGQVYFVYNRVENIKEMASYIAKLIPEGKVA 866 Query: 840 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899 + HGQM+ERELE ++ DF ++++LV TTIIETG+DI NT++I AD GL+QL+QL Sbjct: 867 VAHGQMQERELEGIIMDFMQNKYDILVSTTIIETGMDIQNVNTMVIYDADKMGLSQLYQL 926 Query: 900 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959 RGRVGR++ AY +L K + A+KRL+ I +LG+GF +A DLEIRGAG ++ Sbjct: 927 RGRVGRTNRIAYCYLSYRKDKVLKEVAEKRLKVIKEFTELGSGFKIALKDLEIRGAGNMM 986 Query: 960 GEEQSGSMETIGFSLYMELLENAVDALKA--GREPSLEDLTSQQTEVELRMPSLLPDDFI 1017 G Q G M +G+ LY +LE+++ +K +EP +T VEL++ + +PD++I Sbjct: 987 GSSQHGHMAAVGYDLYCRMLEDSIKLIKGEIDKEPV-------ETTVELKVDAYIPDNYI 1039 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 + ++ YK+IA+ + ++ +IK EL DRF +P L+DIA +R ++LGI Sbjct: 1040 ENEVQKIEVYKKIAAISSYEDMLDIKEELEDRFYDIPPSVYNLMDIAYIRSIGKELGIES 1099 Query: 1078 LEGNEKGGVIEFAEKNHVNPAWLIGLLQ 1105 ++ ++ V F ++ V+ L L++ Sbjct: 1100 IKESKNEVVFTFQNEDRVDKNVLKALVK 1127 >UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lactobacillaceae RepID=C8P4L0_9LACO Length = 1185 Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/1154 (34%), Positives = 645/1154 (55%), Gaps = 45/1154 (3%) Query: 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMNLAD 72 G ++L+ ++G+A L+A + E+ PV+ + + L D+++ V Sbjct: 30 GTRQLVTGISGSARTLLLAGLVEQSQQPVLAVVDSLSQVEELADDLANLLPPDRVYQFPV 89 Query: 73 WETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKK 132 E L + + + R+ L L + + V++ V L + V F L + Sbjct: 90 EEVLAAEVATSSPNYRLQRVQALDALDSQRPAVVVTSVAGLRRNVFAPEFFAQATLKVAV 149 Query: 133 GQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 G L + R QL + GY+ V+ G++A RG+++D++ + ++ P R+D FD E+DSL Sbjct: 150 GGELDPERARQQLSAMGYQLQKMVLRPGDFAIRGSIIDVYALNTDNPVRIDLFDTEVDSL 209 Query: 193 RVFDVDSQRTLEEVEAINLLPAHEF---PTDKAAIELFRSQWRDTF--EVKRDPEHIYQQ 247 R FD +Q+++ E + +LPA + P + + ++ Q D E++ I QQ Sbjct: 210 RYFDASTQKSVGNAEEVEILPATDLILPPAEFSRVQAAVKQQFDQLKAELQDGDADILQQ 269 Query: 248 VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRG 307 V+ P + +E L +P L+ D + D +R ++R Sbjct: 270 VNNRFTPLLTALQERRLPNEMLEFGDLVYPTRHSLL---DYLAADGALYLDDYSRLKDRA 326 Query: 308 VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPT------------KAANANLGF 355 L WL + +L + P + + L K NL F Sbjct: 327 ----GKLADEDQGWLEEKVKYHQLVSVPSLSNEFAKLVKADQHAQLFGALFKKGAGNLRF 382 Query: 356 QKLPDLAVQAQQK--APLDALRKFLETFDG---PVVFSVESEGRREALGELLARIKIAPQ 410 +L ++ + Q+ + L+ L+ + ++ + RR+ + L I P Sbjct: 383 SQLVEITSRPMQRFFGQMPLLKTELQRWTDQGQTIIIMADGNERRQQIARTLTDFGI-PV 441 Query: 411 RIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTL 470 D+ L+ + +GF L +I E +L ++V +RR +++ N + Sbjct: 442 IETAADQLQVNTVQLVAASLNNGFEMPAAGLVVITEGELF-KQVKKRRHRAQKLANAER- 499 Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 I++ +L G VVH+ HG+G ++G+ T+E G+ +Y+++ Y N+A+++VPV+ L+L+ Sbjct: 500 IKSYTDLKPGDYVVHVNHGIGIFSGIKTMEVDGVHQDYMIINYRNNAQIFVPVTQLNLVQ 559 Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 +Y + +++LGG+ W++ +++ A KV D+A EL+D+YA+R A +G+AF D Sbjct: 560 KYVSAESKTPRINRLGGNEWAKTKRRVASKVEDIADELVDLYAKREAAKGYAFPADDYLQ 619 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 F +FP+ T DQ ++I V DM +P MDRL+ GDVG+GKTEVAMRA F AV K Sbjct: 620 AQFDANFPYTETRDQLRSIKEVKRDMEKPRPMDRLLVGDVGYGKTEVAMRAIFKAVTGGK 679 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 QVA LVPTT+LAQQH+D RFA +PV+I ++SRF++ +E + A +A G IDI++GT Sbjct: 680 QVAFLVPTTVLAQQHFDTLSKRFAGFPVKIALMSRFKTNQELKETDAGLAAGSIDIVVGT 739 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H++L DV+F+DLGL+IVDEE RFGV+HKER+K ++ NVD+LTLTATPIPRTLNM+M G+ Sbjct: 740 HRILSKDVQFRDLGLVIVDEEQRFGVKHKERLKELKNNVDVLTLTATPIPRTLNMSMLGV 799 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 RDLS++ TPPA R ++T+V E + +R+ I RE+ RGGQVYYL+N V +I++ +L Sbjct: 800 RDLSVLETPPAGRFPIQTYVMEQNGGAIRDGITRELNRGGQVYYLHNRVSDIEETVMKLQ 859 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 LVP+ARI HG+M E ELE V+ DF ++VLV T+IIETG+DIP NT+ +E ADH Sbjct: 860 ALVPDARIGYIHGKMGENELETVLYDFIQGNYDVLVTTSIIETGVDIPNVNTLFVENADH 919 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 GLAQL+Q+RGR+GRS+ AYA+ + K +T +KRL AI +LG+GF +A DL Sbjct: 920 LGLAQLYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTELGSGFKIAMRDL 979 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS 1010 IRGAG +LG++Q G ++++G+ LY +L AV A K G++ + EVEL + + Sbjct: 980 AIRGAGNILGKQQHGFIDSVGYDLYSSMLNEAV-ARKQGKKRA----ARADAEVELGVEA 1034 Query: 1011 LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQA 1070 LPD ++ D ++ YK I A+T++EL EI+ +L+DRFG P LL I++L+Q A Sbjct: 1035 YLPDSYVNDQRQKIELYKAIRQAQTDDELLEIQGDLLDRFGDYPAAVGNLLLISKLKQHA 1094 Query: 1071 QKLGIRKLEGNEKGGVIEF--AEKNHVNPAWLIGLLQKQPQHYRL---DGPTRLKFIQDL 1125 + I +++ +I F A + V +I LL K L +G ++ + + Sbjct: 1095 DEAMIEQIKRQRDSILITFTPAGSHLVKAPQIIKLLAKTKFKATLGEHEGQLTVRLV--I 1152 Query: 1126 SERKTRIEWVRQFM 1139 + T+ +W+ Q + Sbjct: 1153 QPKMTQTDWLNQLL 1166 >UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clostridiales RepID=C4ZBV9_EUBR3 Length = 1177 Score = 675 bits (1742), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1123 (36%), Positives = 623/1123 (55%), Gaps = 58/1123 (5%) Query: 38 HAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQ 97 H +++ Q A L+DE S F D+ V+ + L Y S + + R+ L Sbjct: 48 HRKNKLIVTFGEQKAKELYDEYS-FFDKEVVYYPSKDVLFYQSDIRGNLLTAERIRALKA 106 Query: 98 LPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVM 157 + +R L+ + LM + P + + L +++GQ L ++ L GY QV Sbjct: 107 IREQERVTLVTTFDALMNTMAPIEKMWENVLTLEQGQLLDLKEIQAALIRMGYEKEYQVQ 166 Query: 158 EHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF 217 G+++ RG +LD+FP+ E P R++ + DEID++R FD +SQ+++E ++ +++ PA E Sbjct: 167 TMGQFSVRGGILDVFPLTEENPIRIELWGDEIDTIRYFDCESQKSIENIDRVSIYPAAEL 226 Query: 218 ---------PTDKAAIELFRSQWRDTFEVKRDPEH--------IYQQVSKGTLPAGIEYW 260 DK E R + ++K + H + ++ + ++ AG++ + Sbjct: 227 VLSDEEKAGGIDKLKAEAKRVSDKLRKQMKTEEAHRVTVMADELTEEWGELSMYAGMDAF 286 Query: 261 QPLFFSEPLPPLFSYFPANTLLV------NTGDLETSAERFQADTLARFENRGVDPMRPL 314 FF E + L + P+++L+ T + + F R M + Sbjct: 287 LSYFFDERVGILDYFNPSDSLIFFDELTRCTEQGKLTETEFSESMKQRL------AMGYI 340 Query: 315 LPPQSLWLRVD-ELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAP--- 370 LP Q L + E+ ++L + + L L KA G +L + Q +P Sbjct: 341 LPGQMNGLFTEKEIVAKLGKYSCIALAA--LDNKAN----GLHQLGSYGIHCQSVSPYNN 394 Query: 371 -LDALRKFLETFDGP---VVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLM 426 + L K L+ + V+ S R + L E + I D G+ ++ Sbjct: 395 SFELLIKDLKRYKKNGYRVILLSGSRTRAKRLSEDITDQGITCFYTENYDHELFEGQIMV 454 Query: 427 I-GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVH 485 G GF + A+I ESD+ G A++++ R I++ +L +G VVH Sbjct: 455 CYGKVRRGFEYPILKFAVITESDIFG---AQQKKKKRHRTYEGEKIQSFTDLSVGDYVVH 511 Query: 486 LEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKL 545 HG+G Y G+ LE +Y+ + Y + LY+ + L +I +YAG L+KL Sbjct: 512 ENHGLGIYRGIEKLEVDKKVKDYIKIEYQGGSNLYILATQLDMIQKYAGKDARKPKLNKL 571 Query: 546 GGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQ 605 GG W+R + + V+ +A +L+ +YAQR + G+AF D + F + FPF+ T DQ Sbjct: 572 GGQEWTRTKNRVRGAVKQIAGDLVKLYAQREQQNGYAFGEDTVWQREFEELFPFDETEDQ 631 Query: 606 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 665 AI A +DM MDRL+CGDVG+GKTEVA+RAAF AV + KQVA L PTT+LAQQ Sbjct: 632 ILAIEATKTDMQSHKIMDRLICGDVGYGKTEVAIRAAFKAVQDSKQVAYLAPTTILAQQI 691 Query: 666 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 725 YD F R ++PV ++++ RFRSA EQ + + ++ +G++DI+IGTH++L DV+FKDLGL Sbjct: 692 YDTFSQRMKDFPVNVDLMCRFRSAAEQKKTIEKLKKGEVDIIIGTHRILSKDVQFKDLGL 751 Query: 726 LIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785 L++DEE RFGV HKE+IK M+ NVD+LTLTATPIPRTL+M++ G+RD+S++ PP R+ Sbjct: 752 LVIDEEQRFGVTHKEKIKQMKVNVDVLTLTATPIPRTLHMSLIGIRDMSVLEEPPMDRVP 811 Query: 786 VKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQM 845 ++T+V EY+ +VREAI RE+ R GQVYY+YN V +I +L ELVP+A +A HGQM Sbjct: 812 IQTYVMEYNDELVREAINRELARNGQVYYVYNKVRDIADITAKLQELVPDATVAFAHGQM 871 Query: 846 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 905 +E ELER+M F + +VLV TTIIETG+DI NT+II AD+ GL+QL+QLRGRVGR Sbjct: 872 KETELERIMYRFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGLSQLYQLRGRVGR 931 Query: 906 SHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 S+ AYA+L+ K + A+KRL AI DLG+GF +A DLEIRGAG LLG EQSG Sbjct: 932 SNRTAYAFLMYRRNKMLKEVAEKRLAAIKEYSDLGSGFKIAMRDLEIRGAGNLLGAEQSG 991 Query: 966 SMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ-QTEVELRMPSLLPDDFIPDVNTRL 1024 ME +G+ LY ++L AV K +ED++ + T V++ + +P +I + +L Sbjct: 992 HMEAVGYDLYCKMLSEAVKEAKG-----IEDISDKFDTTVDIVTDAYIPAGYIANEFQKL 1046 Query: 1025 SFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKG 1084 YKRIA +TE E +E+ ELIDRFG P +LL +ARL+ A + I +++ + G Sbjct: 1047 DIYKRIAGIETEEEKDEMLEELIDRFGEPPKSVLSLLRVARLKALAHAVYITEIK--QTG 1104 Query: 1085 GVIEFA--EKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDL 1125 +I+ E+ +NP + L+ + + + F DL Sbjct: 1105 SLIKLTMFERARINPEKIPELIARYKSSLKFNMAENPYFTFDL 1147 >UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Ammonifex degensii KC4 RepID=C9RA21_AMMDK Length = 1123 Score = 673 bits (1737), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1117 (37%), Positives = 610/1117 (54%), Gaps = 57/1117 (5%) Query: 11 VKAGEQRLLGELTGAACATLVA-EIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN 69 ++AG+ + + L+G A + L+A E AG ++I PD + AL L E+ + V Sbjct: 21 LQAGKPQAVYGLSGTALSFLLAATFREWPAG--MVIVPDEETALTLAAELKLLWGEEVFV 78 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 E P + RL +L L Q GV++ L+Q + P H Sbjct: 79 FLPREIFGLGPSLPSAFVPRQRLLSLAALARRQ-GVVVATAPALLQGLAPPENFSPHCWE 137 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 + KG+ LS + L +L GY V V G++A RG ++D FP S LP R++F DEI Sbjct: 138 LWKGEELSPEELGQRLVETGYVRVSAVEVPGQFARRGGIVDFFPPSSPLPVRVEFDGDEI 197 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVS 249 + FD SQR+ +EA+ + PA E P E+ W F + + Y +V Sbjct: 198 ARIATFDPASQRSQTRLEAVKVEPAVEVPNPCTGREILPESW---FLSQGEDSFPYPEV- 253 Query: 250 KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVD 309 P F + L +Y P L + E R ++ Sbjct: 254 ----------LLPCLFPRVVS-LLAYLPPGA------PLALVEAQAAEKAAREAEERQME 296 Query: 310 PMRPLLPPQSL-------WLRVDELFSELKNWPRVQLKTEHLPTKAANA-NLGFQKLPDL 361 R ++ + L +L E+ EL +P +L+ LP K L + P Sbjct: 297 ICREMIAKKKLPEESRKAFLSWSEVAKELSLYPH-RLRLSFLPEKNGEVLGLAVRTAPSF 355 Query: 362 AVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR 421 + Q A + +++F+ + V+ V+ E R + + E L I P+ +++ Sbjct: 356 LGKFAQLA--EEIQEFMRHYR--VILLVDKEERVKGVVEGLKEYGIIPRLT---PDSAPV 408 Query: 422 GRYLMI--GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHI 479 G ++ G GF+ L+ +++ G R+ + + P ++ E Sbjct: 409 GTVTVVKGGNLREGFIFPEAQFVLLTPAEIFG------RRQATFSPTPTPVVEEEREFKP 462 Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G+ VVH EHG+G Y G+ L G+T EY ++ YA + +LY+P L ++ RY GG Sbjct: 463 GEYVVHPEHGIGIYRGLVQLSVEGVTREYALIQYAGEDRLYLPADQLGVLERYVGGEGAK 522 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599 L +LGG W R R + + DVA ELL +YA R +G AF D + F +FP+ Sbjct: 523 PRLSRLGGGEWKRVRARVKQAATDVARELLRLYAMRETAKGHAFSPDTPWQREFEAAFPY 582 Query: 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 659 E TPDQ +AI V +DM +P MDRL+CGDVGFGKTE+A+RAAF AV + KQVAVLVPTT Sbjct: 583 EETPDQLRAIADVKADMEKPRPMDRLICGDVGFGKTEIALRAAFKAVMDGKQVAVLVPTT 642 Query: 660 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVK 719 +LAQQHY F RFA +P+R+ + RF++ EQ +++ + G IDI+IGTH+LLQ+DV+ Sbjct: 643 ILAQQHYRTFSSRFAPYPIRVAWLCRFQTPAEQREVIKGLKAGTIDIVIGTHRLLQNDVQ 702 Query: 720 FKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 F+DLGL+I+DEE RFGV KE++K +R VD+LTLTATPIPRTL M++ G+RD S + TP Sbjct: 703 FRDLGLVIIDEEQRFGVLQKEKLKLLRKEVDVLTLTATPIPRTLYMSLVGLRDTSCLTTP 762 Query: 780 PARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 839 P RL V+T+V E D ++REAI RE+ RGGQVY++YN V I + A + LVPEAR+A Sbjct: 763 PPDRLPVETYVVEEDPAIIREAIRRELARGGQVYFVYNRVAGIVEVANWVKHLVPEARVA 822 Query: 840 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899 HGQM E LER+M DF +++VLV TTI+E G+DI NT+I++ AD GL+QL+QL Sbjct: 823 YAHGQMPEAALERIMLDFIDHKYDVLVATTIVENGLDIGNVNTLIVKDADQLGLSQLYQL 882 Query: 900 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959 RGRVGR++ AYA+ L K + A+ RL AI LGAGF +A DLEIRGAG LL Sbjct: 883 RGRVGRTNRLAYAYFLYRRDKIINEAAKARLRAIKDFTSLGAGFKVAKRDLEIRGAGNLL 942 Query: 960 GEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPD 1019 G EQ G ++ +G LY LL+ A+ LK E + +EL + + +PDD++P Sbjct: 943 GTEQHGHIQAVGLELYCRLLQEAIKELKGE-----EVVPPVDPVIELTVSAYIPDDYVP- 996 Query: 1020 VNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLE 1079 + +L Y+ ++ A+T E+E + DR+G P P R LL +ARLR QA++L + KL Sbjct: 997 FDQKLEIYQELSRAETPEEVEGLAEGYRDRYGPFPPPFRNLLAVARLRAQAKRLRL-KLI 1055 Query: 1080 GNEKGGV-IEFAEKNHVNPAWLIGLLQKQPQHYRLDG 1115 G + G + FA + ++PA L+ + K ++ +G Sbjct: 1056 GRQGGFYRLVFAPGHQLSPAKLVAVADKWGARFKQEG 1092 >UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SUU5_9FIRM Length = 1186 Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1119 (34%), Positives = 634/1119 (56%), Gaps = 78/1119 (6%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSF 81 + G L+ +++ + +VL D + A +L+ ++ ++ + M A + + + S Sbjct: 35 MEGTDRVFLMNAVSDESSVKLVLTYSD-KRAEQLYSDLRFYSRDVYMYPA--KDILFFSA 91 Query: 82 SPHQDIIS-SRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDA 140 H + I+ R+ L +L + + ++ V+ L ++ S+++ + + + QRL D Sbjct: 92 DVHGNAITRKRMDVLRRLVSGEPCTIVATVDALFDKIPALSYMNKYIINICTAQRLDVDD 151 Query: 141 LRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ 200 LR +L + GY VD V E G++A RG ++D++P+ E PYR+D +DDE+D+++ FD +SQ Sbjct: 152 LRQKLSALGYDKVDNVEEPGQFAVRGGIIDIYPLTEECPYRIDMWDDEVDTIKTFDAESQ 211 Query: 201 RTLEEVEAINLLPAHEFPTDK-----------AAIELFRSQWRDTFE------VKRDPEH 243 R++E V++I + PA E + A ++ + + +++F +KR+ Sbjct: 212 RSIETVDSIVIYPAGEIVLSQDRINRGIRKIEAELKPYAQKLKESFHTEAYARIKREVAE 271 Query: 244 IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV-----NTGDLETSAER-FQA 297 + +Q+++ + G++ + F+S+ + L P ++ ++ D + E F++ Sbjct: 272 LKEQLTEFSAVYGVDSYVDYFYSDTVS-LIDCLPDDSYVLIDETRKVSDRAATDETGFRS 330 Query: 298 DTLARFENRGVDPMRPLLPPQ-SLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQ 356 + R E V LP Q ++ D++ + K + V GF Sbjct: 331 SMVHRLEGGYV------LPGQMNVMYSYDDVIDKAKKYNVV----------------GFD 368 Query: 357 KLP--DLAVQAQQKAPLDA--LRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRI 412 D + K ++ + + +FD +V + S + + ++ + +R+ Sbjct: 369 AFDGRDDRISYAHKTEIECHEVHSYRNSFD-TLVADIRSWKKNKNSVLFVSPSSVGAKRM 427 Query: 413 M-RLDEASDRGRYL--------------MIGAAEHGFVDTVRNLALICESDLLGERVARR 457 + L +A YL M G GF+ +L ++ E D+ R + Sbjct: 428 VDNLMDADIICHYLSDADKVLTPREIAAMAGRLRSGFMIPAMHLVVVSEGDVFSSRSSSG 487 Query: 458 RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDA 517 ++ ++ +I++ +++ +G VVH ++G+G Y G+ +E G +YL++ YA Sbjct: 488 KRTQKKLPYSGEIIKSFSDVSVGDYVVHEKYGIGVYKGIEKIEVDGALKDYLVIEYAEGG 547 Query: 518 KLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAA 577 KLYV S I +Y +++LGG+ W + R + V +VA L+ +YA+R + Sbjct: 548 KLYVLASETDRIQKYRSKEGRPPKINRLGGNEWQKVRNRVKGHVDEVAEHLVKLYAERQS 607 Query: 578 KEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV 637 KEG A+ D E + F ++FP++ T DQ +AI V +DM MDRLVCGDVGFGKTEV Sbjct: 608 KEGHAYSPDSEWQKEFEETFPYKETDDQLRAIADVKADMESSRIMDRLVCGDVGFGKTEV 667 Query: 638 AMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILA 697 A+RAAF AV + +QVA LVPTT+LA+QHY+ F +R ++PV I ++ RF + KE L Sbjct: 668 AIRAAFKAVGDSRQVAYLVPTTILAEQHYETFTERMKDYPVVIRLLCRFCTQKEIKNTLR 727 Query: 698 EVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTAT 757 E+ EGK+DI+IGTH+LL DV+FK+LGLLI+DEE RFGV HKE+IK M+ NVD+LTLTAT Sbjct: 728 ELKEGKVDIVIGTHRLLSKDVEFKNLGLLIIDEEQRFGVNHKEKIKEMKTNVDVLTLTAT 787 Query: 758 PIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYN 817 PIPRTL+M++ G+RD+S++ P R ++T+V EYD + REAI RE+ R GQVYY+YN Sbjct: 788 PIPRTLHMSLVGIRDMSLLEEAPVDRRPIQTYVMEYDKELAREAIARELARQGQVYYVYN 847 Query: 818 DVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 877 V +I++ + +LVP A + HGQM R LE +M F+ + +VLVCTTIIETG+DI Sbjct: 848 RVNDIEQFTAEVQKLVPNANVEFAHGQMDGRTLEDIMYRFNKKEIDVLVCTTIIETGLDI 907 Query: 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 P ANTIII A++FGLAQL+QLRGRVGRS A+A++ K ++ A+KRL AI Sbjct: 908 PNANTIIIHDANNFGLAQLYQLRGRVGRSDRSAFAFMFYRRNKVISEVAEKRLRAIKEYT 967 Query: 938 DLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDL 997 DLG+G ++ DL IRGAG +LGE QSG+ E +G+ LY ++L DA++ R ++ Sbjct: 968 DLGSGVKISKADLNIRGAGSVLGESQSGNYEVVGYDLYCKMLN---DAVRERRGDTV--F 1022 Query: 998 TSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPA 1057 +TE+++ + S +P+ ++ + +L KRI+ K E+E +I ELIDRFG +PD Sbjct: 1023 HDYETEIDIPIDSFIPETYVKNDFIKLELCKRISLIKNEDEYNDIIDELIDRFGDIPDET 1082 Query: 1058 RTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVN 1096 LLD A LR +A I ++ + G++ F+ N N Sbjct: 1083 MNLLDAALLRARAYVCYITRIW--YRDGLLRFSMYNKAN 1119 >UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myxococcaceae RepID=MFD_MYXXA Length = 1201 Score = 669 bits (1727), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/690 (48%), Positives = 473/690 (68%), Gaps = 8/690 (1%) Query: 424 YLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPV 483 +L G HGFVD LA++ + ++ G R RR + S++ D +L G + Sbjct: 482 HLFTGEVSHGFVDGPGGLAVLADEEIFGARARRRPKRSKKL---DAFGSGFGDLKEGDLI 538 Query: 484 VHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLH 543 VH + G+GRYAG+T +E G+ G++L+L YA K+Y+PV + LI +++GG L Sbjct: 539 VHTDFGIGRYAGLTKMEVNGVPGDFLVLEYAGRDKIYLPVGRMRLIQKFSGGDPTQVQLD 598 Query: 544 KLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTP 603 KLG +W + +++ E++ +AAELL I A R A G AF + F F FE TP Sbjct: 599 KLGTTSWEKTKKRVKEQLLKMAAELLQIAAARKAHPGHAFSAPDRYFAQFEADFEFEETP 658 Query: 604 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQ 663 DQA+AI VL+DM +P MDRLVCGDVG+GKTEVAMRAAF A + KQVAVLVPTT+LAQ Sbjct: 659 DQAKAIEDVLADMQKPEPMDRLVCGDVGYGKTEVAMRAAFKAALDRKQVAVLVPTTVLAQ 718 Query: 664 QHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 723 QH+ +F+ RFA++PV +E+IS + A E +IL EGK+DILIGTHKLL +V FK+L Sbjct: 719 QHFLSFKKRFADYPVTVEVISGLKKAPEVREILKRAKEGKVDILIGTHKLLGGEVAFKEL 778 Query: 724 GLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 783 GL+IVDEE RFGV+ KE +K R+ +D+LTLTATPIPRTL+M+MSG+RD+SIIATPP R Sbjct: 779 GLMIVDEEQRFGVKQKESLKKWRSQIDVLTLTATPIPRTLHMSMSGVRDMSIIATPPQDR 838 Query: 784 LAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHG 843 A++TFV +Y+ VV+EAI RE+ RGGQV++++N VE++ +L LVP+ I + HG Sbjct: 839 RAIRTFVMKYEDTVVKEAIEREVARGGQVFFVHNRVESLPSIETQLRALVPQVSIGVAHG 898 Query: 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903 QM E +LE+VM F +++ VL+CT+IIE+GIDI +ANT+I+ RAD FGLAQL+QLRGRV Sbjct: 899 QMGEGQLEKVMLAFTEKKYQVLLCTSIIESGIDISSANTMIVNRADQFGLAQLYQLRGRV 958 Query: 904 GRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQ 963 GRS +AYA+LL P +A+T DAQ+RLE + + +LGAGF++A+HDLEIRGAG LLG++Q Sbjct: 959 GRSKERAYAYLLVPSRRAVTKDAQRRLEVLQNFTELGAGFSIASHDLEIRGAGNLLGDKQ 1018 Query: 964 SGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTR 1023 SG++ IGF +Y +LLE AV ++ G+ P ++ + +V L MP+L+PDD++ DV+ R Sbjct: 1019 SGAIAEIGFDMYAQLLEEAVAEMQ-GQPPKVQ----IEPDVTLPMPALIPDDYVSDVHQR 1073 Query: 1024 LSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 L FYKR + A +E+ +++ EL+DR+G PD L ++ L+ + L +R LE Sbjct: 1074 LVFYKRFSQASHPDEVTDLRAELVDRYGEAPDEVDHLSELTLLKIDMRDLRLRGLEVGTT 1133 Query: 1084 GGVIEFAEKNHVNPAWLIGLLQKQPQHYRL 1113 V+ ++ + GL+Q+ YRL Sbjct: 1134 RLVVTLGADALLDGPKVAGLVQRSKGVYRL 1163 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 112/214 (52%), Gaps = 8/214 (3%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM---- 66 ++AG++ L GAA ++A + P+V +A D + A L ++S F Sbjct: 38 LRAGQRVRTQGLKGAARGHVLARLHGALRAPLVCVAVDEEAADALAADLSFFLGGQGSLL 97 Query: 67 ---VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQR-GVLIVPVNTLMQRVCPHSF 122 V+ L E LPYD SP ++ RL L+ L R L++ V L ++V P + Sbjct: 98 APRVLRLPADEVLPYDEVSPDAAAVTERLGALFHLGQGTRFPALVLSVRALHRKVLPLAV 157 Query: 123 LHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRL 182 + A + GQ RD+L +L GY++ V + G ++ RG LLD+F + P RL Sbjct: 158 MRALAARVAVGQDFDRDSLARRLVRMGYQNSPLVEDVGTFSVRGDLLDVFSPLYDKPVRL 217 Query: 183 DFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHE 216 +FF D I+S+R FD SQRT++ ++ ++L+PA E Sbjct: 218 EFFGDTIESIRAFDPQSQRTVDALKEVDLVPARE 251 >UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clostridia RepID=A4XIS4_CALS8 Length = 1143 Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/1099 (35%), Positives = 623/1099 (56%), Gaps = 53/1099 (4%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 LGE+ A LV I ++ V+ I + D++++ L + E Sbjct: 30 LGEM---GKALLVHAICQKFNKKVLFITHQKSKS-EWEKRFKNLFDKVIV-LQERENPLI 84 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 +SF+ +D R ++ VLI+ L+++ F +L++++ + L Sbjct: 85 NSFAKSKDSEIQRAEEFVRIFEEGFDVLILSPQNLLEKYSDFKF---ESLILEENKELGF 141 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 + T L GY V V + G+++ +G ++D++P+ S+ P R++FF D ID++R FDV+ Sbjct: 142 EEFLTTLTRYGYERVKVVEKKGQFSQKGGIVDIYPIFSKYPVRIEFFGDTIDTIRYFDVE 201 Query: 199 SQRTLEEVEAINLLPAHEFP--------TDKAAIELFRSQWRDTFEVKRDPEHIYQQVSK 250 +Q++ E V + + A E+ K + + Q + + +++ E ++ V Sbjct: 202 TQKSFERVCYVKIYKACEWDLSIDFSDGIKKIVADFKKLQNKLKGDARKNLEESFKDVID 261 Query: 251 GTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQA-DTLARFENRGVD 309 G I+ P ++ + +F F ++++ E Q +L FE + D Sbjct: 262 GA-ELKIDRLYPYYY-QNFRSIFDIFGDCFVIID--------EYTQVYGSLKTFEEQTED 311 Query: 310 PMRPLLPP-------QSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLA 362 + LL + +V ++ +L + +Q + + F L ++ Sbjct: 312 LYKDLLEKGYVLTKMAGCYFKVYDILEKLSSSIILQTFAQSIKEIQVKDIFSFNNLREIP 371 Query: 363 VQAQQKAPLDALRKFLETFDGPV-VFSVESEGRREALGELLARIKIAPQRIMRLDEA-SD 420 QK L K+ ++ + VF+ G +L +L + ++ + + DE +D Sbjct: 372 SYNGQKELLIEDIKYYQSKGYLINVFA----GSETSLEDLKSELEKSRIEFNKADEVLTD 427 Query: 421 R-GRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHI 479 R G YL+ + E G ++NL +C S E+ + R +T + +L Sbjct: 428 RQGVYLLPRSVEKGI--EIQNLKWVCLSFFNVEKKKGKDVKKRPKSKKETFY-TIEDLKY 484 Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G VVH +G+G++ G + G+T EYL L YAN++ LYVP ++L +I +Y G + Sbjct: 485 GSYVVHRTYGIGKFLGFEKITVEGVTKEYLKLEYANNSYLYVPTTNLDVIEKYIGTDDSE 544 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599 L KLG W + +QK + + VA +++++YA+R K+GF F D + F + FP+ Sbjct: 545 PKLSKLGTLEWQKQKQKVRKSLEVVAKDIVELYAKRQLKKGFKFSPDTIWQKEFEEKFPY 604 Query: 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 659 T Q QAI + DM MDR++CGDVG+GKTEVAMRAAF AV + KQVAVLVPTT Sbjct: 605 TETEGQLQAIEEIKKDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTT 664 Query: 660 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVK 719 +LAQQHY F R ++P+ IE++SR +S +Q +IL + +G IDI+IGTH+LL +DVK Sbjct: 665 ILAQQHYMTFVQRMKDFPITIEVLSRLKSESQQKKILKALKDGTIDIIIGTHRLLSNDVK 724 Query: 720 FKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 FKDLGLLI+DEEH+FGV HKE+IK ++ NVD+LTLTATPIPRTLNMA+ G+RDLSII P Sbjct: 725 FKDLGLLIIDEEHKFGVEHKEKIKKLKENVDVLTLTATPIPRTLNMALLGIRDLSIIEDP 784 Query: 780 PARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE-ARI 838 P R V+TFV EY+ V++EAIL+E+ RGGQV+YLYN V++I++ RL L+ E +I Sbjct: 785 PEDRFPVQTFVMEYNEKVIKEAILKEVSRGGQVFYLYNRVKDIEEVVNRLQALLGEDIKI 844 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 A HGQM ER+LE V+ DF + +++VLVCTTIIE+G+D+P NT+I+E AD GLAQL+Q Sbjct: 845 AYAHGQMDERQLEEVLIDFINGKYDVLVCTTIIESGVDMPNVNTLIVEDADRLGLAQLYQ 904 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 LRGRVGRS+ AYA+ K ++ +A KRL AI +LG+GF +A DLEIRGAG + Sbjct: 905 LRGRVGRSNKLAYAYFTFRKDKVLSEEAAKRLSAIKEFTELGSGFKIAMRDLEIRGAGSI 964 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGR-EPSLEDLTSQQTEVELRMPSLLPDDFI 1017 +G+ Q G + +G+ +Y+ LL + LK +P +E ++++R+ + + ++I Sbjct: 965 VGKLQHGHINAVGYDMYIRLLSEEIRRLKGEEIQPEIE------PQIDIRVNAYISSEYI 1018 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 D R++ YK+I+S T+ +++EI ELIDRFG +P L+ IA ++ ++LGI Sbjct: 1019 DDDKERINMYKKISSIDTKEDVQEIYDELIDRFGDIPKEVDNLIKIAYIKFLCKRLGILS 1078 Query: 1078 LEGNEKGGV-IEFAEKNHV 1095 + N+ V ++F + ++ Sbjct: 1079 ISQNDSEKVKLQFVAQENI 1097 >UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=Staphylococcus RepID=MFD_STAS1 Length = 1170 Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/1120 (35%), Positives = 636/1120 (56%), Gaps = 37/1120 (3%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN- 69 V E L+ L+GAA AT++AE ++++ ++ A +L ++ QF + + Sbjct: 21 VFGKENVLVTGLSGAAKATIIAEKYLNSEQQLLVVTNNLYQADKLESDLLQFVEDSEIYK 80 Query: 70 --LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHA 127 + D T + + SP +S R+ TL L +RG+ IVP+N L + + P H Sbjct: 81 YPMQDIMTEEFSTQSPQ--FMSERVRTLTALAQEERGLFIVPLNGLKKWLTPVDMWKSHQ 138 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 L + G + D +L + GYR V GE++ RG ++D++P+ + P R++FFD Sbjct: 139 LTLNVGDDIDIDEFLNKLVNMGYRRESVVSHIGEFSLRGGIVDIYPLIGK-PVRIEFFDT 197 Query: 188 EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 247 E+DS+R FDV+SQR+ +E +++ A ++ + ++ + + + +E D ++ Sbjct: 198 EVDSIRDFDVESQRSEGNIEHVDITTASDYIITEDVLKHTKHKLKQAYE---DTRPKIEK 254 Query: 248 VSKGTLPAGIEYWQPL---------------FFSEPLPPLFSYFPANTLL-VNTGDLETS 291 + L E +Q F E + YF + ++ V+ + Sbjct: 255 SVRNELKETYESFQLFEAEMFDHQVLRRLVAFMYEQPATIMDYFKEDAIIAVDEYNRIKE 314 Query: 292 AERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW--PRVQLKTEHLPTKAA 349 E + F ++ + + QS +L+ + + LK + L T +P + Sbjct: 315 TETTLVTEIDEFMQNLIESGKGFID-QS-FLQYEGFENLLKPFAVTYFTLFTATMPVQL- 371 Query: 350 NANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAP 409 N + F P Q ++F++ D +V E+E ++E + +L + I P Sbjct: 372 NEIIKFSCKPVQQFYGQYDIMRSEFQRFIQN-DYTIVVLAETETKKERIQSMLNEMHI-P 429 Query: 410 QRIMRLDEASDRGRYLMI-GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPD 468 I ++ G ++ G+ GF L ++ E +L + ++ + + N + Sbjct: 430 TFIDTPSRRNEGGSAIITEGSLSEGFELPYMQLVVVTERELFKSKQKKKPKQHKTLTNAE 489 Query: 469 TLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHL 528 I++ +L +G VVH+ HGVGRY G+ TLE GG+ +Y+ L Y +L+VPV + Sbjct: 490 K-IKSYQDLKVGDYVVHVHHGVGRYLGVETLEVGGVHKDYIKLQYKGTDQLFVPVDQMDQ 548 Query: 529 ISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDRE 588 + +Y +++ L+KLGG W + + K + V D+A EL+++Y R G+ F D Sbjct: 549 VQKYVASEDKSPKLNKLGGTEWKKTKAKVQQSVEDMADELIELYKAREMSVGYKFGPDTA 608 Query: 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 + F FP+E TPDQ+++I + DM MDRL+CGDVG+GKTEVA+RAAF AV Sbjct: 609 EQNDFEIDFPYELTPDQSKSIEEIKQDMEIERPMDRLLCGDVGYGKTEVAVRAAFKAVME 668 Query: 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 708 KQVA LVPTT+LAQQHY+ +R ++P+ +++ISRFR+ KE + + G +DI++ Sbjct: 669 GKQVAFLVPTTILAQQHYETLIERMQDFPIEVQLISRFRTTKEVKETKEGLKSGFVDIVV 728 Query: 709 GTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMS 768 GTHKLL D+++KDLGLLIVDEE RFGVRHKERIK+++ NVD+LTLTATPIPRTL+M+M Sbjct: 729 GTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKSLKNNVDVLTLTATPIPRTLHMSML 788 Query: 769 GMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAER 828 G+RDLS+I TPP R V+T+V E ++ ++EA+ RE+ R GQV+YLYN V++I + E+ Sbjct: 789 GVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKREQ 848 Query: 829 LAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 L L+P+A I + HGQM ER+LE M F + ++++V TTIIETG+D+P ANT+IIE A Sbjct: 849 LQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVPNANTLIIEDA 908 Query: 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATH 948 D FGL+QL+QLRGRVGRS YA+ L P K ++ A+ RL+AI +LG+GF +A Sbjct: 909 DRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTELGSGFKIAMR 968 Query: 949 DLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRM 1008 DL IRGAG LLG++Q G ++++GF LY ++LE AV+ K G + +D + + E+EL + Sbjct: 969 DLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNE-KRGIKAEKQD--APEIEIELNI 1025 Query: 1009 PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQ 1068 + LP ++IP+ +++ YK++ ++E +L ++K ELIDRF P LL++ ++ Sbjct: 1026 DAYLPAEYIPNEQSKIEIYKKLRKIESETQLMDVKDELIDRFNDYPIEVERLLEMMEIKV 1085 Query: 1069 QAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQP 1108 A G+ ++ K + +EK + Q QP Sbjct: 1086 HALHAGVTLIKDVGKQVEVYLSEKGTTDINGETLFKQTQP 1125 >UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Clostridia RepID=A8MK41_ALKOO Length = 1174 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 382/1107 (34%), Positives = 617/1107 (55%), Gaps = 65/1107 (5%) Query: 34 IAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLS 93 I + G V ++ + A ++++++ + + L E + Y+ + ++ R+ Sbjct: 47 IQDEIKGQVCIVTYNEMEARQIYEDLKFYAGDRAIFLPSKEIMFYNMEATSRNAQEERMK 106 Query: 94 TLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHV 153 + + +++ ++T ++ + P S + + + G + + + L GY Sbjct: 107 AIETILEGSDCIVVTAIDTFLRLMPPPSAYTKNQISFQVGDTVDLEKVIENLVMQGYERE 166 Query: 154 DQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLP 213 D V E G+++ RG ++D+FP +E+P R++ F DEIDS+R F +QR+L+++EA+ + Sbjct: 167 DIVEERGQFSIRGDIIDIFPSSAEMPVRVELFGDEIDSIRNFQPATQRSLDKIEAVKVYA 226 Query: 214 AHEFPTDKAAIELFRSQWRDTFE-------------VKRDPEHIYQQVSKGTLPAGIEYW 260 A E + +E + ++ +K E + +++ G+E Sbjct: 227 AKETTIESFDVEAVILKLNQDYKNISKKLNQAAKENLKNSLEELSEKLRSLGNFRGVEKL 286 Query: 261 QPLFFSEPLPPLFSYFPANTLLV----------NTGDLETSAERFQADTLARFENRGVDP 310 P + E L YF N L + + G +E E F+ RG Sbjct: 287 LPYIY-EKTTCLLHYFKDNALFILDEPSRLREKSEGYIEEFKESFKI-----LVERG--- 337 Query: 311 MRPLLPPQS-LWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKA 369 + P Q L L E+ LK V L LP + P + Sbjct: 338 --EVFPGQGKLILSYGEVIDRLKEKRIVTLSL--LPK-------AIKDFPPKEIINFDTR 386 Query: 370 PLDALRKFLETFDGPVVFSVESEGRREALG-----------ELLARIKIAPQRIMRLDEA 418 P+ + LE G + ++ +G + AL E L +I + ++ + Sbjct: 387 PMASFHGKLELL-GKEIQRLQYKGYKIALIPGTKERCLKLLEFLREKEIPAEYLVGEKQD 445 Query: 419 SDRGRYLMI-GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAEL 477 G +++ G GF A+I + ++ G +R+ + + +P I++ +L Sbjct: 446 LVTGEVVILSGNLRRGFEYVKNKFAVITDYEIYGVHKQQRKTNKTKDASP---IKSFIDL 502 Query: 478 HIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAE 537 +G VVH HG+G+Y G+ L+ G+ +YL + Y+ + LYVP + LI +Y G + Sbjct: 503 KVGDYVVHEGHGIGKYIGIEELKVEGVKKDYLKIRYSGEGFLYVPTDQMDLIQKYIGSDD 562 Query: 538 ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSF 597 L+KLGG W++ + K + + D+A EL+ +YA+R +G AF D + + F + F Sbjct: 563 APPKLNKLGGSEWAKTKTKVKKAIEDMAGELIKLYAEREKTKGHAFSPDSDWQKQFEELF 622 Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 P+E TPDQ + I V DM + AMDRL+CGDVG+GKTEVA+RAAF AV + KQVA LVP Sbjct: 623 PYEETPDQLRCIEEVKQDMEKERAMDRLLCGDVGYGKTEVAIRAAFKAVGDSKQVAFLVP 682 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 TT+LAQQHY+ F+ RF+++P+ +EM+SRF++A Q +I+ + G +DI+IGTH+LL D Sbjct: 683 TTILAQQHYNTFKQRFSDFPITVEMLSRFKNATAQKKIIENIRTGNVDIVIGTHRLLSKD 742 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 +++KDLGLLIVDEE RFGV+HKE +K ++ ++D+LTLTATPIPRTL+M+M G+RD+S+I Sbjct: 743 IEYKDLGLLIVDEEQRFGVKHKEALKKLKKSIDVLTLTATPIPRTLHMSMIGIRDMSVIE 802 Query: 778 TPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEAR 837 PP R V+T+V Y +V +AI RE+ RGGQVYY+YN V+ I + A L ELVP+ R Sbjct: 803 DPPEERFPVQTYVLGYSESMVVDAISRELARGGQVYYVYNRVQGIHQVANNLKELVPQGR 862 Query: 838 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 897 +A+ HGQM ERELE++M ++ + +++LV TTIIETG+DI NTIII+ AD GL+QL+ Sbjct: 863 VAVAHGQMSERELEKIMLEYMNGEYDILVSTTIIETGMDISNVNTIIIQDADKLGLSQLY 922 Query: 898 QLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGE 957 QLRGRVGRS+ Q YA+L+ K ++ A+KRL+AI + G+GF +A DLEIRGAG Sbjct: 923 QLRGRVGRSYRQGYAYLMYEKDKILSEVAEKRLKAIKEFTEFGSGFKIAMRDLEIRGAGN 982 Query: 958 LLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFI 1017 LLG EQ G M IG+ LY++LLE V ++ ED T +EL + + + + +I Sbjct: 983 LLGGEQHGHMAAIGYDLYVKLLEETVGEMRGEYTEKFEDTT-----IELNVNAYISEKYI 1037 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 + + ++ YK+IAS + + ++ ++ E+ DRFG +P AR LL I+ ++ A+ L + Sbjct: 1038 GNPSHKIEIYKKIASIRNKEDMYRVEEEIEDRFGDIPLSARNLLLISYIKSLAKGLKVTA 1097 Query: 1078 LEGNEKGGVIEFAEKNHVNPAWLIGLL 1104 + +K I+F + + + P + +L Sbjct: 1098 ITQKDKEIRIQFKDGSMLKPEGIGNVL 1124 >UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamily II helicase) n=5 Tax=Dehalococcoides RepID=D2BIN1_DEHSV Length = 1154 Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1075 (38%), Positives = 601/1075 (55%), Gaps = 65/1075 (6%) Query: 31 VAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISS 90 +A + R P+++I + A L ++I+ +T + L D LPY Q +S Sbjct: 47 LASVYRRLKCPMLVITSQPERARELLEQIAAYTGEEPGFLPDPSLLPY------QRAVSD 100 Query: 91 RLSTLYQL-------PTMQRG---VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDA 140 R S+L ++ ++ G +++ V L+QR + + G + Sbjct: 101 RNSSLEKMRLAGILGGYIRSGDSRIIVTAVPALLQRYVSPEIFKQSFIQVWAGLEIEPQD 160 Query: 141 LRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ 200 L ++ GYR V G Y+ RG +LD+FP + P RL+FF + ++SLR FD SQ Sbjct: 161 LISRFQQLGYRQESIVEIPGTYSHRGGILDIFPHTEDNPVRLEFFGNTLESLRNFDPKSQ 220 Query: 201 RTLEEVEAINLLPAHEF-----PTDKAAIELFRSQWRDTF--EVKRDPEHIYQQVSKGTL 253 R+ + V + + PA E T K D E R +++G Sbjct: 221 RSGKAVNELTISPASELFHLGQLTRKDINNRLDILLTDNLNPEFSRTLSADINHLNEGLK 280 Query: 254 PAGIEYWQPLFFSEPLPPLFSYFPANTLLV---------NTGDLETSAERFQADTLARFE 304 P E++ PLF + + Y P++ L+V L+ AE ++D L+ E Sbjct: 281 PEYPEFFAPLFNTSSI---LDYLPSDALVVLDEPASIEQAAFHLDKEAEELRSDRLSHGE 337 Query: 305 NRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQ--LKTEHLPTKAANANLGFQKLPDLA 362 V P RP NW + LKT+ A+ D A Sbjct: 338 LPSVYP-RPYF-----------------NWAEISAMLKTKKRLIMASFGRESESLKLDFA 379 Query: 363 VQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLA-RIKIAPQRIMRLDEASDR 421 L L + L G V + L ELL R +A + L Sbjct: 380 SPDNYVGRLSGLYEKLPELKGHTGRVVIVSHQAARLAELLKERSILAVVQTDVLTPPPPA 439 Query: 422 GRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQ 481 L+ G G+ NL ++ +++L G V +RR S+R P + ++ G+ Sbjct: 440 SLSLVQGILGSGW-SLSDNLHILTDAELFG-FVKQRRLPSKR---PSARKGVVLDIKPGE 494 Query: 482 PVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541 VVH++HGV ++G++ + G+ EYL+L YA KLYVP + ++R+ G +E Sbjct: 495 FVVHIDHGVALFSGVSHMNRDGMDKEYLILQYAGGDKLYVPTDQMDRVNRFIGSGDEPPS 554 Query: 542 LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFET 601 LH+LG W RA++KA+E + A ELLDIYA+R G+AF D Q SFP+ Sbjct: 555 LHRLGTQEWQRAKEKASESAEETARELLDIYAKRELANGYAFSADTVWQQEMEASFPYVE 614 Query: 602 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLL 661 TPDQ +A+ + DM + MDRL+ GDVG+GKTEVA+RAAF AV + KQVAVLVPTT+L Sbjct: 615 TPDQLKALCDIKEDMEKTRPMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVAVLVPTTVL 674 Query: 662 AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 721 AQQHY FR+R A +PV++E++SRFRS EQ +++ + +G++DI IGTH+LLQ+D+KFK Sbjct: 675 AQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENMEKGEVDICIGTHRLLQADIKFK 734 Query: 722 DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781 DLGL+I+DEE RFGV HKE K +RA VD+LTL+ATPIPRTL+M+M G+RD+S+I TPP Sbjct: 735 DLGLVIIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGVRDMSVIETPPG 794 Query: 782 RRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 841 RL +KT V +D ++REAILRE+ R GQV+++ N V I AER+ +LVPEARI IG Sbjct: 795 ERLPIKTVVAAFDERLIREAILREMERNGQVFFVSNRVMGINLLAERIQKLVPEARIGIG 854 Query: 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901 HGQM E +L VM DF +VLVCTTIIE+G+D+P ANT+II RAD FGL QL+QLRG Sbjct: 855 HGQMAEDKLAAVMADFVRYELDVLVCTTIIESGVDVPNANTLIINRADRFGLTQLYQLRG 914 Query: 902 RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961 RVGRS AYA+ L K ++ DA+KRL+ I +LGAG+ +A DLEIRGAG LLG Sbjct: 915 RVGRSSQLAYAYFLYDKEKHLSGDAEKRLKTIYEAAELGAGYGIAMKDLEIRGAGTLLGV 974 Query: 962 EQSGSMETIGFSLYMELLENAVDALK-AGREPSLEDLTSQQT---EVELRMPSLLPDDFI 1017 +QSG + ++GF+LY ++L AV LK AG S E++ Q +++L + + +P+ +I Sbjct: 975 KQSGYINSVGFNLYTQMLSEAVAGLKAAGSGLSKEEIRIQNMPAPKLDLPLDAFIPEYYI 1034 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 D++ RLS Y+++++ + + E + EL DRFG++P LL RLR A+K Sbjct: 1035 QDLDLRLSIYQQLSTLASLAGVLEKEKELTDRFGVMPKELENLLYSFRLRLLAKK 1089 >UniRef50_Q6MGN1 Transcription-repair coupling factor n=2 Tax=Proteobacteria RepID=Q6MGN1_BDEBA Length = 1172 Score = 665 bits (1716), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/1095 (35%), Positives = 612/1095 (55%), Gaps = 72/1095 (6%) Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG-VLIVPVNTLMQRVCPHSFLHGHAL 128 L ++ PY P+ +++ R+ L + + + G + I V+ LMQ+ P L H+ Sbjct: 82 LPAFDVSPYSGLYPNTQVVADRVRFLAKAQSAKAGEIFISSVDALMQKTLPVKILKDHSK 141 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 ++ G L + L S GY V + G++A RG ++D++P P R+D F D+ Sbjct: 142 TVRAGDELPEN-LSDYFSSLGYTAAPMVEDKGQFAVRGGIVDIYPPTENQPVRMDLFGDQ 200 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR-----DPEH 243 ++SLR F V QR+ +E+++ L PA E E + R + E ++ E Sbjct: 201 VESLRHFSVADQRSSDEIQSFVLTPAREVLYRDETHERLLQRVRASLEGRKVDKAEAEET 260 Query: 244 IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPA--NTLLVNTGDLETSAERFQADTLA 301 + V K P GIE+ P F+ E P +FP N ++ ++ A+ A+ A Sbjct: 261 LRSLVLKNAFP-GIEFLLPYFYGELATPA-DHFPGALNLWFLDPVEISRCADEMWAELKA 318 Query: 302 RFENRGVDPMRPLLPPQSLWLRVDEL----------FSELKNW-------PRVQLKTEHL 344 +RP L + +++ + L FS L+ + RV+ +T Sbjct: 319 DHRTSDAHVIRPEL--EDIYVNFEALAYPLNSRQVYFSSLEYFDEENSDDSRVEYRTAMT 376 Query: 345 P--TKAANANLGFQKLPDLAVQAQQ--KAPLDALRKFLETFDGPVVF-SVESEGRREALG 399 T A AN AV +Q +A + L ++ + +G +F S +++ + L Sbjct: 377 QDFTNLALAN---------AVGTEQWLQAATNKLHRWRD--EGYRIFVSTKNQSHIDRLS 425 Query: 400 ELLARIKIAPQRIMRLDEASDRGRY---LMIGAAEHGFVDTV-RNLA-----------LI 444 + ++++ R +SD R+ L E V V R LA + Sbjct: 426 LVFEKLELKAVRT-----SSDEYRWDSWLQEQDREQNIVHIVPRYLAESLRLEEEKIIFL 480 Query: 445 CESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGI 504 + D G++ + + + +L G VVH +HG+G+Y G+ + G+ Sbjct: 481 RDEDFYGKKQRAKESSGAQDFQKQAKRLSFGDLKPGDLVVHTKHGIGQYEGLKIMNISGV 540 Query: 505 TGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDV 564 EY+ + Y + KLY+PV + + +++G + L KLGG AW + + K VRD+ Sbjct: 541 ESEYIQVGYKDKDKLYLPVYRVGQLQKFSGAG--TSILDKLGGTAWEKTKAKVKSHVRDI 598 Query: 565 AAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDR 624 AA+LL +YA+RA AF ++ +F + FP+E T DQ +AIN + D+ MDR Sbjct: 599 AADLLTLYAKRAEMHRPAFVIKEDEVLMFENGFPYEETDDQLRAINDIRKDLKSTKPMDR 658 Query: 625 LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMIS 684 LVCGDVGFGKTEVAMRAAF A+ KQVAVL PTT+L QH++ F+ RF WPV I +++ Sbjct: 659 LVCGDVGFGKTEVAMRAAFFAIQARKQVAVLAPTTVLTFQHFETFKKRFEGWPVDIRVLN 718 Query: 685 RFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKA 744 RF + E + L ++ +GK+D+++GTHKLL S + +KDLGLLI+DEE +FGV HKE+IK Sbjct: 719 RFVTPAEVKKTLQDLKDGKVDLIVGTHKLLGSSIAYKDLGLLIIDEEQKFGVTHKEKIKK 778 Query: 745 MRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILR 804 ++ +VD LTL+ATPIPRTLNMA+ G+RDLS+I T P RL +TFV ++D +R+AI Sbjct: 779 IKTSVDTLTLSATPIPRTLNMALVGIRDLSLINTAPVDRLPTRTFVTKFDPETIRKAITA 838 Query: 805 EILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNV 864 EI RGGQVY+++N +E+I + + ++VPEARI + HGQM E ELE+ M F H +V Sbjct: 839 EISRGGQVYFIHNRIESIYGLVDEIRQIVPEARIRVAHGQMEEHELEKAMLAFFHHEIDV 898 Query: 865 LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTT 924 LVCT I+E+G+D+P ANT+ I+ A FGL+QL+QLRGRVGRS +AY +L+ P + Sbjct: 899 LVCTAIVESGMDVPRANTMFIDTAHLFGLSQLYQLRGRVGRSKTRAYCYLMMPRNHKLDK 958 Query: 925 DAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVD 984 + Q+RL+ I LG+G +A +DLE+RG+G +LGEEQSG + ++G+ +YM+LL + Sbjct: 959 EQQERLKIIQENTALGSGIKIAQYDLELRGSGNILGEEQSGHVNSVGYEMYMDLLN---E 1015 Query: 985 ALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKV 1044 AL + S+ED+ E+ L++P+L+PD +I D+ RL +YK +A + +L+ I+ Sbjct: 1016 ALAEAKGESVEDM-DLDPELNLKIPALIPDAYIKDIRIRLGYYKALADITSNEDLDRIEE 1074 Query: 1045 ELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLL 1104 EL D+FG +P+ L+ + +R+Q ++LG+R + K + F EK ++P +I L Sbjct: 1075 ELRDQFGPIPEQTVNLMGLMLIRRQCKELGVRDISAGLKSISLIFTEKTKLSPEKVIQLA 1134 Query: 1105 QKQPQHYRLDGPTRL 1119 ++ + Y L RL Sbjct: 1135 IRESKKYSLTPDNRL 1149 >UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFL2_CARHZ Length = 1160 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/1096 (36%), Positives = 612/1096 (55%), Gaps = 78/1096 (7%) Query: 24 GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYD-SFS 82 G A L+A +A+ P+++I + Q A + +++ F E +D + Sbjct: 35 GTARTFLMATVAKALNRPLLVITENEQVAREIAEDLEFFLGDKTSRFFYREGFLFDLTVR 94 Query: 83 PHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALR 142 ++ +SR+ L +L ++ +V L ++ P ++ G + + L Sbjct: 95 EGGELKASRIELLKRLSRGEKPHTVVNYEALTRKYPPLQSFARWKRELRVGDVVELEELI 154 Query: 143 TQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRT 202 L GY VDQV G+++ RG ++D++ G E+P+R +FF DEIDSLR DV+SQR+ Sbjct: 155 RYLSQIGYERVDQVEAPGQFSQRGGIVDVYVPG-EVPFRAEFFGDEIDSLRALDVESQRS 213 Query: 203 LEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSK---GTLP-AGIE 258 + + + PA ++ L + + + ++++ + + QQ + G L G E Sbjct: 214 QANLNEVVIYPAEVAVAEEDL--LLEVKQKISADIEQQVKKLIQQNKREAAGRLKEKGAE 271 Query: 259 YWQPLFFSEPLPPLFSYFPANTLLVNT---------------GDLETSAERFQADTLARF 303 L SE + L YF + L++ G+ S E+ + ++ Sbjct: 272 VLNILGKSEVIEKLLPYFWSGVSLLDYFGDEYLVFLDEPGRFGEQINSLEKLRRESFTEA 331 Query: 304 ENRGVDPMRPLLPPQS-LWLRVDELFSELKNWPRVQLKTEHLPTKAANA------NLGFQ 356 + G LP Q+ ++ ++L + L+ R+ + T LP N + Sbjct: 332 LSGGYT-----LPKQAEVFYEEEQLMALLRG--RIAVITSLLPKTPRFIGDYDPHNFAGR 384 Query: 357 KLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLAR-----------I 405 K P+ ++K + ++ FL + E ELL R + Sbjct: 385 KPPNYL--GKEKLFFEDIKNFLANNYRIFILRGREEAAVALKNELLKRNFPASFVEKFEV 442 Query: 406 KIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTI 465 +IAP+ I + +G GF + L + + +L G V R + Sbjct: 443 EIAPREIK-----------IGLGVLNSGFEFPQQKLLVYTDVELAGRAVKAR-------V 484 Query: 466 NPDTLIRNLAE-LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVS 524 L E G VVH HG+G+Y G+ +E GG +YL++ Y + +LYVP Sbjct: 485 TKAVLGERAEEPFSPGDYVVHPVHGIGKYLGIKPVEVGGNVKDYLVIAYQGEDRLYVPPE 544 Query: 525 SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 + + +Y G E L +LGG W R + + VR++A LL++YA+R AK GFAF Sbjct: 545 QVGNLQKYVGVDGEPPKLSRLGGSDWQRVKNRVKAAVREMAEGLLELYAKRMAKPGFAFS 604 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 D + F + FP+E TPDQ +AI V DM +P MDRL+CGDVG+GKTEVA+RAAF Sbjct: 605 PDTVWQKEFEERFPYEETPDQLKAIEEVKRDMEKPKVMDRLLCGDVGYGKTEVALRAAFK 664 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 AV + KQVAVL PTTLLAQQHY+ F++RF+ +PV I ++SRF++A+EQ +I+ E+ GK+ Sbjct: 665 AVMDGKQVAVLTPTTLLAQQHYNTFKERFSGYPVEIRLLSRFQTAREQKEIIKELKRGKV 724 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 DI+IGTH+LLQ DV+F DLGL+IVDEE RFGV KER+K + VD+LTLTATPIPRTL+ Sbjct: 725 DIVIGTHRLLQDDVQFYDLGLMIVDEEQRFGVAQKERLKILTETVDVLTLTATPIPRTLH 784 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 MA+ G+RDLS++ TPP R V+T+V E D ++R+AI RE+ RGGQV++++N V +I + Sbjct: 785 MALMGIRDLSVLNTPPENRFPVQTYVLEEDPFIIRDAIRRELGRGGQVFFVHNRVSDIDE 844 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 A + LVPEA++A+ HGQM+E +LERVM +F +++VLV TTIIETGID+P NT+I Sbjct: 845 VAAWVQSLVPEAKVAVAHGQMKEEQLERVMLEFISGKYDVLVSTTIIETGIDLPNVNTLI 904 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 I+ AD FGLAQL+QLRGRVGRS+ AYA+L+ K + A+KRL AI + G+G Sbjct: 905 IKNADRFGLAQLYQLRGRVGRSNRIAYAYLMYEKDKVLREAAEKRLAAIKEFTEFGSGLK 964 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTE- 1003 LA DLEIRGAG LLG EQ G + +GF +YM+LL+ V LK +TS++ E Sbjct: 965 LAMRDLEIRGAGNLLGPEQHGHIAAVGFDMYMKLLQETVAELKG-------QVTSEEVEP 1017 Query: 1004 -VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLD 1062 +EL + + +P+ +IPD ++ Y+R++ + +LE++ ELIDRFG +P L+ Sbjct: 1018 QLELNLTAYIPESYIPDEKQKIEMYRRLSRTRNLEDLEDVVDELIDRFGEIPPEVENLIR 1077 Query: 1063 IARLRQQAQKLGIRKL 1078 + +++ A KL ++ + Sbjct: 1078 LIKIKIVASKLKVKGI 1093 >UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Veillonellaceae RepID=A1HRU9_9FIRM Length = 1109 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/725 (46%), Positives = 473/725 (65%), Gaps = 13/725 (1%) Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 + +G GF LA++ E D+ G R+++ R I +L +G VV Sbjct: 379 ITVGVLAGGFELPHAKLAVLTEKDIFG----RQKKGIRPRAAKGQQITYFRDLKVGDYVV 434 Query: 485 HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544 H+ HG+G+YAG+ TLE GG+ +Y ++ YA + K+YVP +HL+ +Y G E LH+ Sbjct: 435 HVNHGIGKYAGVETLEVGGVHRDYFLIRYAGEDKIYVPTDQVHLLQKYIGAEGEVPRLHR 494 Query: 545 LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604 +GG W +A +A V D+A EL+ +YA R GFAF+ D + F ++FP+E TPD Sbjct: 495 MGGTEWQKATSRAKAAVADLAKELIALYAARQVTPGFAFEPDTPWQKEFEEAFPYEETPD 554 Query: 605 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 664 Q QAI+ + DM P MDRL+CGDVGFGKTEVA+RAAF AV + KQVAVLVPTT+LAQQ Sbjct: 555 QLQAISEIKRDMEAPRPMDRLLCGDVGFGKTEVAIRAAFKAVMSGKQVAVLVPTTVLAQQ 614 Query: 665 HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 724 HY F RFA + +++ISRFRS KEQ LA+V G++D+LIGTH+LL DV+FKDLG Sbjct: 615 HYQTFSSRFAGFGPVVDVISRFRSPKEQKATLAKVRAGQVDVLIGTHRLLNPDVQFKDLG 674 Query: 725 LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784 LLIVDEE RFGV KE++K R N+D+LTL+ATPIPRTL+M++ G RD+SII TPP R Sbjct: 675 LLIVDEEQRFGVAQKEKLKKWRTNIDVLTLSATPIPRTLHMSLVGARDMSIIETPPEERY 734 Query: 785 AVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 844 V+T+V EY VVR+AI RE+ RGGQVY++YN V+ I K RL+E++P+ARI + HGQ Sbjct: 735 PVQTYVVEYHEEVVRDAIRRELRRGGQVYFVYNRVQTIDKMHSRLSEILPDARIGVAHGQ 794 Query: 845 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 M E LERVM DF+ +++LVCT+IIE+G+D+P ANTII+ AD FGLAQL+Q+RGRVG Sbjct: 795 MSEDRLERVMLDFYEGNYDILVCTSIIESGLDVPNANTIIVYDADKFGLAQLYQMRGRVG 854 Query: 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 964 R+H AYA+ K +T A+KRL+AI +LGAGF +A DLEIRGAG +LG +Q Sbjct: 855 RTHRMAYAYFTYQRDKVLTEVAEKRLQAIKEFAELGAGFKIAMRDLEIRGAGNILGPQQH 914 Query: 965 GSMETIGFSLYMELLENAVDALKAGR--EPSLEDLTSQQTEVELRMPSLLPDDFIPDVNT 1022 G + ++GF +Y LL+ AV L+ G+ +P E + +E + + L D+I D Sbjct: 915 GHILSVGFEMYCRLLDEAVQELRTGKVVQPPPEPV------LEFNVDAYLSGDYISDAMH 968 Query: 1023 RLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNE 1082 ++ Y+RIA+ +TE + E+ ELIDRFG P P + L +AR++ A+ LGIR + Sbjct: 969 KIEVYQRIAAIRTEEHISELVDELIDRFGEPPQPVQNLFMVARIKNYARVLGIRSIFQRR 1028 Query: 1083 KGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLD-GPTRLKFIQDLSERKTRIEWVRQFMRE 1141 I+F ++ ++ ++ L P + GP + ++ ++ + ++W+ + +R Sbjct: 1029 DHVEIQFTDRPNIGLDDIMALKSTYPGRVSIQPGPPQTLRLKTVNLTEPVLDWLVKVLRP 1088 Query: 1142 LEENA 1146 L E+A Sbjct: 1089 LSESA 1093 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 97/205 (47%), Gaps = 1/205 (0%) Query: 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLA 71 A + L+ LTG + L+A + +I ++ +L +++ V+ L Sbjct: 24 ANKASLIYGLTGTQKSVLLAAAYHKKPRATFIITVSGESLSQLKSDLATLLPAAPVLELP 83 Query: 72 DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 + + + + ++ + RL +L + +++ +MQ+ P L + + Sbjct: 84 ALDFVTFSVTAKSLELTAQRLDIYSRLLGGEPVIVLATAEAIMQKAPPKEELVNSRVSLA 143 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 G + + L L GY VDQV G+++ RG ++D+FP+ P RL+ F DEIDS Sbjct: 144 AGGIVQLEKLLATLVRFGYERVDQVDNVGQFSARGGIIDIFPLNRPYPLRLELFGDEIDS 203 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHE 216 LR FD +QR++ ++ +++P E Sbjct: 204 LREFDPATQRSIGALDKADIMPIIE 228 >UniRef50_C5NXX8 Transcription-repair coupling factor n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXX8_9BACL Length = 1183 Score = 655 bits (1689), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/1020 (36%), Positives = 595/1020 (58%), Gaps = 69/1020 (6%) Query: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL 178 P F ++ + + +S D L+ +L + GYR V+ V GE++ RG+++D+F SE Sbjct: 122 PSDF-KNNSFEINEDTVISFDELQRKLVNMGYRRVESVDVVGEFSKRGSIVDIFSPLSEK 180 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF--PTDKAAIELFRSQWR-DTF 235 P RLDFFDDE+DS+R+FD +QR+L+ +++ + P +F +++ I + R + D Sbjct: 181 PIRLDFFDDELDSMRIFDEITQRSLDRIDSAVIYPTSDFFLTSEEKDIVVERVLAKLDDK 240 Query: 236 EVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERF 295 ++++D YQ++S L +E ++ + L S+ +N + NT + A+ Sbjct: 241 KIQKDEN--YQEIS-TYLKEKVEIYRA---TGDFSDLESF--SNLIYENTYSI---ADYL 289 Query: 296 QADTLARFEN-----RGVDPMRP--LLPPQSL---WLRVDEL----FSELKNWP--RVQL 339 DT+ ++N ++ +R L Q + ++ D + F +++N + L Sbjct: 290 NDDTIVFYDNYHKILEKIEGLREYFLTSLQEMNRSYIYQDVIDNIAFEKIQNLDIRKYYL 349 Query: 340 KTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALG 399 T L K N + DLA + ++ +R+ + T + V+ S+ ++ +++ + Sbjct: 350 STLKLNDKIIEKNYNLD-IIDLAYYSSEEYLAKEIREKI-TDNYKVIISLNTQKQKDYVE 407 Query: 400 ELLARIKIAPQRIMRLDEAS---DRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVAR 456 ++L + E D +Y + G D + L+ +L E + Sbjct: 408 KVLFDNYFYDDIYYGVKEGKIFIDLNKYHL-----KGLEDRKNKIFLLTPRELFTEEERK 462 Query: 457 RRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAND 516 +R+ + N + IRN EL+IG +VH+ HG+G Y G+ +E GG+ ++L + Y Sbjct: 463 KRRVKFKYTNSEK-IRNYQELNIGDYIVHVSHGIGLYEGIENVEVGGVFKDFLKIVYDGG 521 Query: 517 AKLYVPVSSLHLISRYAGGAEENAP-LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR 575 +YV +++++ I +Y + P L+KLG W + + + +++ D++ +L+ +Y +R Sbjct: 522 DIIYVDINNMNYIQKYTASTDNRKPALNKLGTKNWQKTKSRVRKEIEDISEDLIKLYIKR 581 Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 G+A+ D F F F T DQ +A + DM + MDRL+CGDVGFGKT Sbjct: 582 ELSSGYAYSIDGSLQAEFEADFSFTPTEDQVKATEEIKRDMEKERPMDRLLCGDVGFGKT 641 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 EVAMR AF AV ++KQVAVLVPTTLLA+QHYDNF +RFAN+P+ IE++SRF+SAK+ T+I Sbjct: 642 EVAMRVAFKAVTDNKQVAVLVPTTLLAEQHYDNFVNRFANFPINIEVVSRFKSAKDITEI 701 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 ++ EGKIDI++GTHKLL K+KDLGLLI+DEE RFGV+HKE+IK ++ VD+LTL+ Sbjct: 702 CKKLEEGKIDIIVGTHKLLNDKFKYKDLGLLIIDEEQRFGVKHKEKIKHLKNTVDVLTLS 761 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYL 815 ATPIPRTL+M++ G+RDLS+I TPP R ++TFV + MV++EA++ E+ RGGQV+Y+ Sbjct: 762 ATPIPRTLHMSLIGIRDLSVIETPPRERQPIQTFVTAQNKMVIKEAVMNEVNRGGQVFYV 821 Query: 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 YN VE I + L L+P+ IA HG+M +RELE +M D +++++L+ TTIIETGI Sbjct: 822 YNRVETIDEKYLELKRLLPDINIAYAHGRMSQRELENIMTDVIDRKYDMLISTTIIETGI 881 Query: 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 DI NT+I+E AD FGL+QL+QLRGRVGRS +AYA+L+ K++T +++KRL AI + Sbjct: 882 DISNVNTLIVEDADRFGLSQLYQLRGRVGRSSREAYAYLMYEPFKSLTENSEKRLSAIKN 941 Query: 936 LEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLE 995 LG+GF +A DL IRGAG++LG Q G ++++G++LY ++LE + A K EP LE Sbjct: 942 FTSLGSGFKIAMQDLSIRGAGDVLGGRQHGFIDSVGYTLYSQMLEQEIQAKKGILEPLLE 1001 Query: 996 --------------------------DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKR 1029 ++ + E++L + + +P ++I ++ FYKR Sbjct: 1002 QDRTQDVSYYENIIKEAAPSIKKDIFEVETDDLEIKLNVDAFIPKEYISSDADKIDFYKR 1061 Query: 1030 IASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEF 1089 + + ++ E+E I +LIDRF + L+DI L+ A+ + ++ VI F Sbjct: 1062 LNNVVSDEEIESIVEDLIDRFSDFGEEVNNLIDICYLKVMAKNTMVTSIKELANKVVITF 1121 >UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lactobacillus delbrueckii subsp. bulgaricus RepID=Q1GBP3_LACDA Length = 1158 Score = 654 bits (1686), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1070 (37%), Positives = 607/1070 (56%), Gaps = 51/1070 (4%) Query: 22 LTG---AACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF--TDQMVMNLADWETL 76 LTG A A L+ + P++LI + A H+++S+ D + + + D L Sbjct: 28 LTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERHNDLSRLLADDDLELFVLDG-NL 86 Query: 77 PYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 + D +SSR+ L L + + GV+I L + + G + Sbjct: 87 ATQTAVSSPDELSSRIQCLNLLLSGRPGVVIATPQGLQYPLSAPALFKKGQKHFAVGDEI 146 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 + L L+ AGY + V++ GE+A RG ++DL+P+ E P RL+FF DEID+++ FD Sbjct: 147 ALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRESPLRLEFFGDEIDTIKTFD 206 Query: 197 VDSQRTLEEVEAINLLPA--HEFPT---DKAAIELFRSQWRDTFEVKRDPEHIYQQVSKG 251 + SQR+LEE+ + A H F D+A EL + E E + ++ G Sbjct: 207 LTSQRSLEELPEATVPAASDHVFTAEDLDRAGRELAGDLPK---EAAASLEIAQEALANG 263 Query: 252 TLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQA------DTLA-RFE 304 LP + S+ L Y PA LL+ D + AE + D LA + Sbjct: 264 QLPDDCNRYLDYLLSKSFS-LLDYLPAKGLLL-FNDWQLIAESVKNMGAINDDYLASQIA 321 Query: 305 NRGVDPMRPLLPPQSLWLRVD---ELFSELKNWPRVQLK-TEHLPTKAANANLGFQKLPD 360 ++ + + L L+ D L+ L +L+ +HL + F ++ Sbjct: 322 SKMMTSRQKLRLDFDAVLKADCHHRLYVSLMAHSMGRLRFGQHLAWDSREPQQFFSQMEL 381 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEAS- 419 L K LD+ K +T VV V S RR+A E R + L EA Sbjct: 382 L------KTELDSYAKKGQT----VVLQVSS--RRQA--EEFNRSCHDYDIYLPLAEADG 427 Query: 420 -DRGR-YLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAEL 477 GR L+IG GFV +L + E +L + +R + +T+ +R+ EL Sbjct: 428 LKEGRAQLVIGGYASGFVLPDSDLVYLTEKELFNQN--KRSKKRIKTLENAQRLRSYTEL 485 Query: 478 HIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAE 537 G VVH+ HG+GR+ G+ TLE G +Y+ +TY +L+VP L L+ +Y Sbjct: 486 KPGDYVVHVNHGIGRFEGIQTLETDGKKRDYITITYQKGDQLFVPDDQLSLVQKYVASEG 545 Query: 538 ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSF 597 + ++KLGG W++ +++ A +V D+A +L+++YA+R A++GFAF D F +F Sbjct: 546 KQPHINKLGGSEWAKTKKRVAARVEDIADDLIELYAKREAEKGFAFSPDGSDQAAFEAAF 605 Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 P+E TPDQ +A + +DM + MDRL+ GDVGFGKTEVAMRAAF A+ + KQVA LVP Sbjct: 606 PYEPTPDQLRATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVP 665 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 TT+LAQQHY +DRF +PV I SRF+ E +I+A + +G ID+++GTH++L D Sbjct: 666 TTILAQQHYQTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKD 725 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 V+ KDLGLLI+DEE RFGV HKE++K ++ N+D+LTLTATPIPRTL+M+M G+RDLS++ Sbjct: 726 VQLKDLGLLIIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVME 785 Query: 778 TPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEAR 837 TPP R ++T+V E V+EA RE+ RGGQV+YL+N V +I++ RL +L+PEAR Sbjct: 786 TPPQNRYPIQTYVLEQLPGTVKEACQREMQRGGQVFYLHNRVGDIEETVARLEQLLPEAR 845 Query: 838 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 897 IA HGQM E +LE +++ F + F++LV TTIIETGID+P NT+IIE ADH+GL+QL+ Sbjct: 846 IAYAHGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLY 905 Query: 898 QLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGE 957 QLRGR+GRS AYA+ L K +T +KRL+AI +LGAGF +A DL IRGAG Sbjct: 906 QLRGRIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLSIRGAGN 965 Query: 958 LLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFI 1017 +LG +Q G ++++G+ LY ++L +A+ + G++P + EV+L + + +P+D+I Sbjct: 966 MLGAQQHGFIDSVGYDLYSQMLADAIKE-RQGKKP----VKKSNAEVDLGLEAYIPEDYI 1020 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 D ++ FYK+I + E+I+ EL+DRFG P LL++A L+ Sbjct: 1021 ADQEQKIEFYKKIKGIGSLQNREDIEDELLDRFGDYPAAVENLLNVASLK 1070 >UniRef50_C6A8D1 Transcription-repair coupling factor n=17 Tax=Actinobacteridae RepID=C6A8D1_BIFLB Length = 1194 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 417/1117 (37%), Positives = 617/1117 (55%), Gaps = 92/1117 (8%) Query: 11 VKAGEQRLLGELTGAACA---TLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD--- 64 V AGE L GA L A A+R PVV++ P + A L ++ + D Sbjct: 48 VDAGEDADPSILVGAPNGIRPALAAASADRK--PVVIVVPSGREAEDLVGDLRSWYDGDP 105 Query: 65 QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG--------VLIVPVNTLMQR 116 V L WETLP++ SP D +++R+ T Y+L Q +L++PV +L+Q Sbjct: 106 NEVAQLMAWETLPHERLSPRADTVANRMETFYRLCHPQSDSEMFGPIRILVMPVRSLIQP 165 Query: 117 VCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176 V LV +G+ ++ + L Y VD VM+ GE+A RG ++D+F Sbjct: 166 VVA-GIGDVKPLVFAQGEEITLEDAVQGLVRNSYTRVDLVMDRGEFAVRGGIIDVFVPTE 224 Query: 177 ELPYRLDFFDDEIDSLRVFDVDSQRTL-EEVEAINLLPAHEFPTDKAAIELFRSQWRDTF 235 P R++FF DEID++R F QRT E + ++ P E E R + + Sbjct: 225 PHPVRIEFFGDEIDTIRRFHSSDQRTYGEPIRSVWATPCREL----QLTEGIRERAQSLI 280 Query: 236 EVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV---------NTG 286 + + + + ++ G+E P + L P+ S P + +++ Sbjct: 281 GQIPNADDLLESIANAIPQEGMESLIPALVDD-LEPVSSMLPRDCIVMLFDPERLRRAVD 339 Query: 287 DLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKN-----WPRVQLKT 341 DL +A F A T G P+ + +L +DE+ +L W Sbjct: 340 DLMKTANEFLA-TSWHVAASGHGAGAPISFEAANFLDLDEVVGQLTYSNHELWKVSGFTV 398 Query: 342 EH-LPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGE 400 + LP + Q L +A+ D L + + D VV + ++G L Sbjct: 399 DQSLPGHVQIDAVAPQDLHGSGEKAE-----DHLGELIRK-DYAVVITAAAQGTLSRLKR 452 Query: 401 LLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGE-------R 453 +L I + +R A+ GF+D AL+ E DL G + Sbjct: 453 MLNEIGVVHFDTIR-------------SQAQDGFIDHASKTALLTERDLTGRTSVAAGVK 499 Query: 454 VARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGG----ITGEYL 509 AR+R R++I+ L EL G VVH +HG+GR+ M G T EYL Sbjct: 500 TARKR---RKSID-------LMELKPGDFVVHEQHGIGRFIEMRQRTTGSGKNQATREYL 549 Query: 510 MLTYANDA------KLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRD 563 ++ YA KL++P L +S+Y G E L+KLGG W++ + KA + V + Sbjct: 550 VIEYAPSKRNAPPDKLFIPTDQLDQVSKYIGA--EIPKLNKLGGSDWAQTKAKAKKHVHE 607 Query: 564 VAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMD 623 +A L+ +Y+ R +GFAF D + D+FP++ T DQ I+ V +DM +P+ MD Sbjct: 608 IAQNLIRLYSARQRAKGFAFSKDTPWQKELEDAFPYQETADQLTTIDDVKADMEKPIPMD 667 Query: 624 RLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMI 683 RL+CGDVGFGKTE+A+RAAF AV + KQVAVLVPTTLL QQH F +RF +PV + + Sbjct: 668 RLICGDVGFGKTEIAIRAAFKAVQDSKQVAVLVPTTLLVQQHLQTFTERFEGFPVNVRAM 727 Query: 684 SRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIK 743 SRF+S KE + + +A+G +D++IGTHKLL +KFKDLGL+I+DEE RFGV KE +K Sbjct: 728 SRFQSTKEINETIKGLADGTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEAKETLK 787 Query: 744 AMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAIL 803 A+R NVD+L+L+ATPIPRTL MA++G+R++S +ATPP RL V T+V Y+ V AI Sbjct: 788 AVRTNVDVLSLSATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAIR 847 Query: 804 REILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN 863 RE+LRGGQV+Y++N VE I++ A+RL +LVPEARI I HG+M ++L++++ DF H+ + Sbjct: 848 RELLRGGQVFYIHNRVEGIEEKAKRLQDLVPEARIGIAHGKMGRKQLDQIIRDFWHRDID 907 Query: 864 VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMT 923 VL+CTTI+ETG+DI ANT+I++RAD FGL+QLHQLRGRVGR +AYA+ L K MT Sbjct: 908 VLLCTTIVETGLDISNANTLIVDRADRFGLSQLHQLRGRVGRGRDRAYAYFLYDPSKPMT 967 Query: 924 TDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAV 983 + +RL IA LG+GF +A DLE+RG G LLG+EQSG +E +GF LY+ ++ A+ Sbjct: 968 EQSHERLVTIAQNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAI 1027 Query: 984 DALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIK 1043 + K +P E ++L + + +P D+I RL Y+++A A++E +L E++ Sbjct: 1028 EDYK---DP--ERTEPVAVTIDLPIEASIPVDYIGSDKLRLEVYRKLAGARSEKDLNELR 1082 Query: 1044 VELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 EL DR+G P +L D+ARLR++A+ LGI ++ G Sbjct: 1083 DELTDRYGKPPKVFESLFDVARLREKARALGISEIIG 1119 >UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E926_9CLOT Length = 1152 Score = 652 bits (1683), Expect = 0.0, Method: Compositional matrix adjust. Identities = 408/1099 (37%), Positives = 611/1099 (55%), Gaps = 56/1099 (5%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD---QMVMNLADWETLPY 78 L+ A + ++E P++++ D NA +L D+ +Q V D+ P Sbjct: 33 LSSVHKAHFLYRLSESSDLPLLVLTDDEANAKKLSDDYNQMAGGELSAVYPAKDFTFRPI 92 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 ++ S + I RL+ L ++ Q V+ + +Q P S L ++ GQ L Sbjct: 93 ETVSREYEYI--RLNVLSRIVNRQVKVVFAGICAAVQYTLPPSRLLEATHTIRAGQELPV 150 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 L L AGY QV +Y+ RG ++D FP P R++F+ DEID++ F++D Sbjct: 151 GELVGMLAGAGYTRRAQVDGSAQYSVRGGIVDFFPTSGSEPVRVEFWGDEIDTISFFELD 210 Query: 199 SQRTLEEVEAINLLPAHE--FPTDKAAIE--------LFRSQWRDTFEVKRDPEHIYQQV 248 SQR VE I + PA E F + + E L S D ++K + +++ Sbjct: 211 SQRRTTPVEEIEISPATEIIFSSPEQLREGINGLIRSLGSSPQADAAKLKLSND--IKRI 268 Query: 249 SKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNT-GDLETSAERFQADTLARFENRG 307 G + I+ + PL + P LF YF + L V+ DL+ SA ++ F+ + Sbjct: 269 DGGLDLSNIDKYIPLAYDRP-ATLFDYFESPLLFVSEWSDLKESARAYE------FQYQ- 320 Query: 308 VDPMRPLLPPQSLWLRVDELFSELKNWPR--VQLKTEHLPTKA-ANANLGFQKLPDLAVQ 364 + ++ LL L +D + Q KT T A AN +L ++L + V Sbjct: 321 -EDLKILLEEGELCKGLDSFVKPFASVSEQIAQGKTVFFDTFAHANHDLRLKEL--ITVN 377 Query: 365 AQQKAPLDALRKFL-------ETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE 417 A Q + K L V+ ++ + L L + I ++ E Sbjct: 378 AMQTSSWSGDLKLLCEDLADLRAQSYSVIIMTGTQKAADVLAHDLEKEGIPSATVVPTGE 437 Query: 418 ASDRGRYLMIGAAEHGFVDTVRNLALICESDL--LGERVARRRQDSRRTINPDTLIRNLA 475 + Y++ G GF +ALI + + L +R +RR+ IR+L+ Sbjct: 438 LTPGVVYVLAGMLSSGFEYPAAKVALITHARIQNLSKRKVKRRKGEE--------IRSLS 489 Query: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGG 535 ++++G VVH+ HG+G + G+ L G++ +Y+ + Y LYVPV+ L ++S+Y G Sbjct: 490 DINVGDFVVHVSHGIGVFEGIANLNLQGVSKDYIKIKYKGSDVLYVPVTQLDMVSKYIGP 549 Query: 536 AEENAP-LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 E A L++L D W++ R + + V ++A EL+ +YA+RA +G+AF D E + F Sbjct: 550 KENGAVRLNRLNSDEWNKTRSRVKKAVAEMADELIRLYAERAKTKGYAFSKDNEWQREFE 609 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 D F +E T DQ + I + +DM M+RL+CGDVGFGKTEVA+RAAF V + KQ A+ Sbjct: 610 DHFEYEETEDQLRCIEEIKADMESDRPMERLLCGDVGFGKTEVALRAAFKCVLDSKQCAI 669 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 L PTT+LA QHY R N+PV IE++SRFR+ KEQ Q+L ++ G++DI+IGTH+L+ Sbjct: 670 LCPTTILAWQHYQTALARIGNFPVNIELLSRFRTPKEQKQVLQKLRTGQVDIIIGTHRLV 729 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 Q DV F DLGL I+DEE RFGV HKER K M VD+LTL+ATPIPRTLNMAMSG+RD+S Sbjct: 730 QKDVAFSDLGLAIIDEEQRFGVTHKERFKEMFRGVDVLTLSATPIPRTLNMAMSGIRDMS 789 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 +I P R ++T+V E+D V+ +AI RE+ R GQVYY++N VE+IQ A ++++LVP Sbjct: 790 VIEQAPQDRHPIQTYVIEHDYGVIADAIKRELRRDGQVYYIHNRVESIQSCAAQISKLVP 849 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 +ARI I HG+M E EL R+ ++LVCTTIIETG+D+ NT+IIE AD+ GL+ Sbjct: 850 DARIGIAHGKMGENELSRIWQQLMEHEIDILVCTTIIETGVDVSNCNTLIIEDADNMGLS 909 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QL+QLRGRVGRS +A A+ K +T A KRL AI G+GF +A DLEIRG Sbjct: 910 QLYQLRGRVGRSKRRASAYFTFRRGKVLTEIASKRLSAIREFTKFGSGFRIALRDLEIRG 969 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPD 1014 AG +LGE Q G ME +G+ +Y+ LL +AV + + P+ ++ ++L M + +P+ Sbjct: 970 AGSILGERQHGHMEAVGYDMYLRLLSDAVSEKQGVKPPT----KVEECLIDLPMEAHIPE 1025 Query: 1015 DFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 D+I ++ RL Y++IAS ++ + E+ ELIDRFG P + L+DIA LR A KLG Sbjct: 1026 DYIENLAQRLDIYRKIASLESHEQSLELIDELIDRFGDPPKSVQGLIDIALLRAAAAKLG 1085 Query: 1075 IRKLEGNEKGGVIEFAEKN 1093 ++ ++KG V+ F KN Sbjct: 1086 FTEI--SQKGVVMLFFPKN 1102 >UniRef50_C6XGB7 Transcription-repair coupling factor n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XGB7_LIBAP Length = 1187 Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/1112 (34%), Positives = 617/1112 (55%), Gaps = 47/1112 (4%) Query: 30 LVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNLADWETLPYDSFSPHQDII 88 ++AEIA R +V I D + + L ++ D V+ W+ LPYD SP ++ Sbjct: 31 ILAEIA-RLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAWDCLPYDRVSPSPYVV 89 Query: 89 SSRLSTLYQLPTMQRG----VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQ 144 + RLS + L + +++ V+ +M R + + L ++ ++ + + Sbjct: 90 TRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLSIQSKDQIDMAKVIEK 149 Query: 145 LDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLE 204 L++ G++ V+ V + GEYA RG +LD++ + P RLDFF + IDSLR+FD +QRT+ Sbjct: 150 LETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKYPVRLDFFGNTIDSLRLFDSSTQRTIR 209 Query: 205 EVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLF 264 E+ + E I FR + F + +Y +S+G G+E+W P F Sbjct: 210 EISIFEINTLSEVMLTSQNISRFRENYLANFGTTTQEDPLYVAISQGRRYPGMEHWLP-F 268 Query: 265 FSEPLPPLFSYFPANTLLVNTGDLETSAER-------FQADTLARFENRGVDPMRPLLPP 317 F + + +F Y ++ + ET+ +R ++A + + +P+ P Sbjct: 269 FYQSMETIFPYLSEFCIITDPLVKETARKRSQLIQDYYEARLQYSSDKKQYSVYKPI-AP 327 Query: 318 QSLWLRVDELFSELKNWPRV-------QLKTEHLPTKAANANLGFQKLPDLAVQAQQKAP 370 + L+L + + ++ ++ Q +T H NA G +P + + + Sbjct: 328 EKLYLNYQQFDALIQTTHKLVQMTAFNQQETAHNRVVHLNAFPGKSWVPSAVQKIESQDN 387 Query: 371 LDA---LRKFLETFDG------PVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR 421 ++ KFL + S S+G + L L+ ++I +++ ++ Sbjct: 388 WESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGF--KKIKKINTLTEI 445 Query: 422 GRYL------MIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLA 475 L +I GF +++ L+ E+DLLG+++ARR ++ ++ + + + Sbjct: 446 NSLLKEEIAAVILPINQGF--ETKHMILVTETDLLGKKIARRVV-RKKNVHAQSFFDS-S 501 Query: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGG 535 + G +VH EHG+GR+ + ++E G + L L YA++AKL+VPV ++ LISRY+ Sbjct: 502 NIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVPVENIDLISRYSTE 561 Query: 536 AEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCD 595 L KLGG AW + +++ D+A +L+DI A+RA ++ Y F Sbjct: 562 IT-TVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPLMVSQDLYSQFIK 620 Query: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655 FP T DQ +AI+AV+ D+ MDRL+CGDVGFGKTE+A+RAAF+AV N QVAV+ Sbjct: 621 RFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAFIAVMNGLQVAVI 680 Query: 656 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 715 PTTLL +QH+ F +RF + VRI ISRF KE + EG++DI+IGTH LL Sbjct: 681 APTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQVDIVIGTHALLN 740 Query: 716 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 775 + F +LGL+I+DEE FGV+HKE +K V +LTL+ATPIPRTL +A++G+R+LS+ Sbjct: 741 PKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTLQLAITGVRELSL 800 Query: 776 IATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE 835 I+ PP R+A +T + +D +VVRE ++RE RGGQ +Y+ + +++K L VPE Sbjct: 801 ISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLEKCYTFLQSEVPE 860 Query: 836 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 895 +IA+ HGQM + LE MN F+ +++VL+ T+I+E+G+D+P ANT+I++RAD FGLAQ Sbjct: 861 LKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTMIVQRADMFGLAQ 920 Query: 896 LHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGA 955 L+QLRGRVGRS ++A L P + +T AQKRL + SL LGAGF LA++DL+IRG Sbjct: 921 LYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGFQLASYDLDIRGT 980 Query: 956 GELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDD 1015 G LLGEEQSG + IGF LY ++LE V ++K ++ D + Q V + ++P+ Sbjct: 981 GNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLVESDWSPQ---VLIEASVMIPES 1037 Query: 1016 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 ++ D+N RLS Y+R+ + ++ K E++DRFG LP LL + L+ + I Sbjct: 1038 YVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVIHLLKVVFLKLLCRIANI 1097 Query: 1076 RKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQ 1107 K++ KG +I+F K NP L+ + +Q Sbjct: 1098 DKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQ 1129 >UniRef50_B0VGK6 Putative transcription-repair coupling factor n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGK6_9BACT Length = 1127 Score = 650 bits (1677), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/1141 (36%), Positives = 613/1141 (53%), Gaps = 71/1141 (6%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNLADWETLPYDS 80 L +A A L + + ++L++ D A + D++ + L D+E LPY+ Sbjct: 34 LNQSARALLAVHLWKHTGKNIILVSQDDIIAEDIWDDLCVLIGKENAHYLPDYEILPYEE 93 Query: 81 FSPHQDIISSRLST-LYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRD 139 SPH I ++R+ T L L + + + L + + FL H L +K+G D Sbjct: 94 RSPHYSIRATRMETFLATLNNDKSAIYSLSARALGRYLPAQKFLSRHILHLKQGMECEPD 153 Query: 140 ALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDS 199 L L GY QV + + A RG ++D+F P RL+F+ DEI +RVF V + Sbjct: 154 TLLHNLYDMGYEIQYQVSKVFQAAKRGGIIDIFSPPLTNPVRLEFWGDEIIGMRVFSVTT 213 Query: 200 QRTLEE-VEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIE 258 QR+LE+ + + +LPA E I ++ GIE Sbjct: 214 QRSLEQYLTELTILPARELSLSDVD----------------SGSPIIAKIRNQGFFEGIE 257 Query: 259 YWQPLFFSEPLPPLFSYFPA-NTLLV--NTGDLETSAERFQADTLARFENRGVDPMRPLL 315 + L +E L YF N +LV N L+ E L ++ + + Sbjct: 258 NYYALLCNE-LQTFADYFEKDNRILVWNNFYYLQEEYETLFEQALTTWQKEAKIQGQGRV 316 Query: 316 PPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALR 375 P R +++F++ ++ K+E L + L F L +AP + Sbjct: 317 P------RPEQMFADWDVLTELKEKSEKLYLSQSEFELSFPTL-------NMRAPFASQP 363 Query: 376 KFLETFDGPVVFSVESEGRREALGE-LLARIKIAPQRIMRLDEASDRGRYL--------- 425 F E L E L +R K Q I+ D S R Sbjct: 364 NF--------------ESDLGLLAETLFSRNKEGWQNILLFDNQSQAKRMQQSIGKIPFT 409 Query: 426 -MIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 G GF +L L + ++ R RR R P I N +L G VV Sbjct: 410 EFFGVLHEGFSLEDCHLNLWTDHEIFN-RYKSRRYTPRYA--PGETIVNYEDLKPGDYVV 466 Query: 485 HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544 H++HG+G + G+ + G E L+L YAND ++YVP L L+++Y L+K Sbjct: 467 HIDHGIGVFEGLKIIRLDGSDVECLVLRYANDDRVYVPTYQLSLVTKYVAEESTKPVLNK 526 Query: 545 LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604 LG W+ ++KAA+++ +AA+++ +YA+R+++ G A + D E + DSF +E TPD Sbjct: 527 LGSSKWNNTKRKAAQQIELIAADIVKLYAERSSRLGIAHQPDTEWQKELEDSFIYEDTPD 586 Query: 605 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 664 Q++A + DM P M+RL+CGDVGFGKTEVA+RAAF AV + QVAVL PTTLL +Q Sbjct: 587 QSKATKEIKEDMELPAPMERLLCGDVGFGKTEVAIRAAFKAVCSGYQVAVLAPTTLLVEQ 646 Query: 665 HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 724 HY FR+R A +PV+I M SRFR + L + G IDI IGTH+LL DV+FK LG Sbjct: 647 HYRVFRERLAQYPVKIVMFSRFRKNTAMKKDLLGLKSGSIDIAIGTHRLLSKDVQFKKLG 706 Query: 725 LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784 LLI+DEEHRFGVRHKE+++A+++NVD L ++ATPIPRTLNMA+S ++++S++ T P RL Sbjct: 707 LLIIDEEHRFGVRHKEKLRALQSNVDTLYMSATPIPRTLNMALSKLKEISLMQTSPKERL 766 Query: 785 AVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 844 V+T + D V+++AI REI RGGQV++++N V+ I+ A L +P+ R +GH Q Sbjct: 767 PVRTIITPRDMEVIKDAIRREIDRGGQVFFIHNRVQTIETVATELRNAMPKVRFIVGHAQ 826 Query: 845 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 M E++LERVM DF + + VL+ TTIIE GIDIP ANTI+I+ A+ FGLAQL+Q+RGRVG Sbjct: 827 MPEQQLERVMADFWAKEYQVLISTTIIENGIDIPNANTILIDNAETFGLAQLYQMRGRVG 886 Query: 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 964 RS+ +AYA+LL K TT A+KRLEA+ + LGAGF +A DLE+RGAG +LG +QS Sbjct: 887 RSNRRAYAYLLI--SKGTTTVARKRLEALTQYDYLGAGFQVALRDLELRGAGTILGTKQS 944 Query: 965 GSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR--MPSLLPDDFIPDVNT 1022 G ++ IGF+ Y +L NA+ A++ G L + S T ++R + P D+I D Sbjct: 945 GIIQAIGFNYYNRILANAIQAVEKGETIKLFNDESPDTRRKVRTEIDLYFPPDYIDDDEE 1004 Query: 1023 RLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNE 1082 RL YKR++ +T ++ ++VEL+DRFG LP+ A LL+ +L Q A+KL ++ + Sbjct: 1005 RLRIYKRLSELETLEDINNLEVELLDRFGPLPEQASWLLNYFQLSQLAKKLSLKDCQVKH 1064 Query: 1083 KGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 ++EF K + L+ K Q R + LK I DL + +++QF + Sbjct: 1065 DSFIMEFDAKKLPSQEQLLHFTTKIKQPLRFEAGKNLKVIIDLDPEAS---YLQQFETAI 1121 Query: 1143 E 1143 E Sbjct: 1122 E 1122 >UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4G9_SPHTD Length = 1173 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/621 (52%), Positives = 432/621 (69%), Gaps = 5/621 (0%) Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 GQ VVH+EHG+ RY G+ TLE G+ EYL+L YA + +LY+PV + I+ Y G E Sbjct: 509 GQYVVHVEHGIARYGGLVTLEVSGVEREYLLLEYAANDRLYLPVDQIDRITPYEGAGIEP 568 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599 L +LG W+R +Q+ VR++A ELL +YA R A EG AF D + + +SFP+ Sbjct: 569 K-LTRLGSPEWARVKQRVRRAVREMAFELLQLYAAREATEGVAFGPDTDWDRELEESFPY 627 Query: 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 659 TP Q QAI V +DM +P MDRLVCGDVG+GKTEVA+RAAF AV+N QVA+LVPTT Sbjct: 628 VETPGQLQAIREVKADMEKPRPMDRLVCGDVGYGKTEVALRAAFKAVNNGYQVAILVPTT 687 Query: 660 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVK 719 +LA QHY FR R A +PVRIEM+SR RS KEQTQIL ++ G+ID++IGTH+LLQ DV+ Sbjct: 688 ILALQHYHTFRSRLAPFPVRIEMLSRLRSRKEQTQILQQLERGEIDVIIGTHRLLQRDVR 747 Query: 720 FKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 FK LGL+I+DEE RFGV HKE K +R NVD+LT+TATPIPRTL MA+SG+RDLS+I TP Sbjct: 748 FKKLGLVIIDEEQRFGVAHKEHFKRLRTNVDVLTMTATPIPRTLYMALSGIRDLSVITTP 807 Query: 780 PARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 839 P R ++TFV + ++REAILREI RGGQVY+++N V++I ERL +LVPEAR Sbjct: 808 PQERTPIRTFVTASNDSLIREAILREISRGGQVYFVHNRVQSIYHVLERLEKLVPEARFG 867 Query: 840 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899 +GHGQM E ELE++M F F+VLVCTTIIE+G+DIP NTIII+RA GL QL+QL Sbjct: 868 VGHGQMDEDELEQLMLAFMQHEFDVLVCTTIIESGVDIPNVNTIIIDRAHQLGLTQLYQL 927 Query: 900 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959 RGRVGRSHH+AYA++L ++ +A RLEAI +LGAGF +A DLEIRGAG +L Sbjct: 928 RGRVGRSHHRAYAYVLYDANVPLSAEAVARLEAIQEATELGAGFQIALRDLEIRGAGNVL 987 Query: 960 GEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPD 1019 G EQSG + +G LY +L AV+ +K GR +E+ + V+L + + +P+ ++ D Sbjct: 988 GPEQSGHVAAVGLDLYTRMLATAVEEIKQGR--PIEE--PEAVTVDLPIEATIPESYVGD 1043 Query: 1020 VNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLE 1079 R+ Y+R+A+ +T EL +++ E+IDRFG +PDP L+D+ARLR +A LGI + Sbjct: 1044 EGVRIDLYRRLAAVRTYAELRDLQEEMIDRFGPMPDPLLRLVDLARLRIRANGLGITSMV 1103 Query: 1080 GNEKGGVIEFAEKNHVNPAWL 1100 E I + +N A L Sbjct: 1104 EREGEVYIRPVLGSRLNQAQL 1124 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 69/243 (28%), Positives = 117/243 (48%), Gaps = 7/243 (2%) Query: 20 GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF--TDQMVMNLADWETLP 77 G T A A L A IAE + PV+++ + +A + ++++ D+ ETLP Sbjct: 36 GPPTSARLAILAALIAE-VSHPVLIVTDRLDSAEEVTAGLAEYLPDDRDPTLWPVSETLP 94 Query: 78 YDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLS 137 Y+ + + + R+ L +L + ++ P L Q + P + + + + G+RL Sbjct: 95 YELLPVDRSVSALRVELLARLARREPVPIVAPARALTQLLSPPADVSAQSWHLAVGERLR 154 Query: 138 RDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDV 197 DA L AGY V V G+ RG ++D+FP + R++ F DEIDSLR+ D Sbjct: 155 SDAFVASLLDAGYEMVPVVQAPGQVGRRGGIIDVFPPVGDHALRIELFGDEIDSLRLIDP 214 Query: 198 DSQRTLEEVEAINLLPAHEFPTDK--AAIELFRSQWRDTF--EVKRDPEHIYQQVSKGTL 253 ++QR++ VE ++LP E + AA+ R T EV + E Q++ +G + Sbjct: 215 NTQRSVRRVEHYDILPPLEVSLAQRDAALSALRQMDTTTLRPEVAEEWERSLQRLERGQV 274 Query: 254 PAG 256 G Sbjct: 275 TVG 277 >UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BD8D Length = 1150 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/1049 (35%), Positives = 592/1049 (56%), Gaps = 42/1049 (4%) Query: 28 ATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDI 87 A L+A + +++I + A L+ +++ +Q+V AD E+L +S + ++ Sbjct: 36 AYLIAGSFWHNPRKILIIKNNQYEAFNLYKTLTELVNQVVYFPAD-ESLRVESVAYSYEL 94 Query: 88 ISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDS 147 + R++ LY + + + + ++++ + + P + +KKG + L+ L Sbjct: 95 LGERINALYAMTQDKPMICVCHMHSMTRYITPVDLFKKSIISLKKGDTIDPLELKKMLQF 154 Query: 148 AGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVE 207 GY++ +V Y+ RG +LD++ + + P R++FFDDEI+ + +D DSQR ++E Sbjct: 155 IGYKNTQRVDSPFYYSRRGEVLDVYTIQYDHPVRIEFFDDEIEEISFYDKDSQRRTNKIE 214 Query: 208 AINLLPAHEFPTDK---AAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLF 264 +I++LPA + + + +E +D VK D + +Q T IE + Sbjct: 215 SIDILPATDMMYEDDGLSQVEASIQTLKDKMTVKDDFKDELEQ----TYALDIESLKAHD 270 Query: 265 FSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWL-- 322 ++ + FP +++ T A LA + + + L+ Sbjct: 271 YNPRIYQYLGLFPETATIMDYARDYTIITASLASILASY--------KTYMEENYLYYHE 322 Query: 323 --RVDELFSELK--NWPRVQLKTEHLPT---KAANANLGFQKLPDLAVQAQQKAPLDALR 375 + ++ LK N P+ LK +++ + + + F P + A +K + L+ Sbjct: 323 LEEIGQMIRGLKLINNPQTILKRQNVDFVRFRENDQQIMFMTQPVMISMANEKIFISQLK 382 Query: 376 KFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR---GRYLMIGAAEH 432 L T++ V+ V+ + + + L L I L A+++ G L +G Sbjct: 383 DLL-TYN-RVMIGVDEKRQIDVLVNLFTDHAIP----FTLTSATNKIYDGVNLFLGHLPC 436 Query: 433 GFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGR 492 G L+ +L + +++ R T I + EL +G VVH +G+G+ Sbjct: 437 GMNFVEEKTVLLTSQELFKVQETKKKYIKYRDA---TKISDYNELKVGDYVVHDTNGIGQ 493 Query: 493 YAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSR 552 Y G+ TL G+ +YL + Y + LYVPV LI +Y+ + +H LG W++ Sbjct: 494 YMGIETLVVDGVHKDYLHIAYKGNDILYVPVEQFQLIRKYSSRDGKPPRIHALGSPKWAK 553 Query: 553 ARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAV 612 + + +KV +A +L+++YA+R + GFAF+ D + F F +E TPDQAQA+ + Sbjct: 554 EKARVRQKVDGLADDLINLYAERMRQPGFAFEPDGDLQLEFESEFGYELTPDQAQAVEEI 613 Query: 613 LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDR 672 DM P MDRL+CGDVGFGKTEVA+RA F A+ + KQ A L PTT+L+ QHY + R Sbjct: 614 KKDMETPRPMDRLLCGDVGFGKTEVALRACFKAIVSKKQCAFLCPTTILSSQHYRTMQKR 673 Query: 673 FANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH 732 F +PV I +++RF + KE+ QIL+++ EG ID+L+GTH++L DV+FKDLGLL +DEE Sbjct: 674 FEKFPVNIALLNRFTTTKEKKQILSDLKEGNIDLLVGTHRILSKDVEFKDLGLLCIDEEQ 733 Query: 733 RFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE 792 RFGVR KE+IK +R +D+LTLTATPIPRTL M++ G+R LS I TPP RL V+T+V E Sbjct: 734 RFGVRQKEKIKNLRKTIDVLTLTATPIPRTLQMSIMGIRGLSQIETPPLNRLPVQTYVSE 793 Query: 793 YDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 852 ++++ I RE+ R GQV+YL+N ENI + A L L+P ARI +GHGQM + ELE Sbjct: 794 KSWALIKQVIERELSRNGQVFYLHNRTENIYEIASTLQTLLPHARIGVGHGQMDKTELED 853 Query: 853 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 VM DF +++++LVCTTIIETGIDIP ANTIIIE AD FGLAQL+Q++GRVGRS AYA Sbjct: 854 VMTDFVEKKYDILVCTTIIETGIDIPNANTIIIENADKFGLAQLYQIKGRVGRSARIAYA 913 Query: 913 WLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF 972 +LL +AMT +AQKRL AI LG+G+ +A DL IRG+G++LG EQ+G ++ +GF Sbjct: 914 YLLYTKDRAMTEEAQKRLTAIKEFTQLGSGYKIAMRDLSIRGSGDILGGEQAGFIDQVGF 973 Query: 973 SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIAS 1032 +YM++L++A+D K G+ + + S+ V+ +P+D++ +L Y+R+ Sbjct: 974 DMYMKILQDAIDE-KQGKIKEDDTVPSRNISVD----GYIPEDYVESDMEKLELYQRVYK 1028 Query: 1033 AKTENELEEIKVELIDRFGLLPDPARTLL 1061 A L+ ++ EL D +G+LP R ++ Sbjct: 1029 ANDLEALKRVEQELTDLYGVLPSQVRNIV 1057 >UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Bacteria RepID=A9KR33_CLOPH Length = 1179 Score = 643 bits (1659), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/1021 (36%), Positives = 579/1021 (56%), Gaps = 45/1021 (4%) Query: 87 IISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLD 146 I+ R+ L L + ++ ++ M ++ P +L + +K+ + + L +L Sbjct: 96 IVRERMRILKNLLERKPMTVVATIDGGMDKLLPLDYLSDKIICIKEDSTIEIECLSEKLI 155 Query: 147 SAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEV 206 GY QV GE+A RG ++D++P+ E PYR++ + DE+DS+R FDV SQR++E V Sbjct: 156 HLGYERQGQVENPGEFAIRGGIIDIYPLTEEAPYRIELWGDEVDSIRTFDVGSQRSIERV 215 Query: 207 EAINLLPAHEFPTDKAAIEL-----------FRSQWRDTFEVKRDPEHIYQQVSKGTLPA 255 + PA E + A++ + + R + + + I+Q V + Sbjct: 216 STAVIYPASEIILEPEALKNGLHKLNIEQKEYVGKLRGELKTE-EAARIHQIVEE--FKE 272 Query: 256 GIEYWQPL--------FFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRG 307 +E Q FF + F YF ++ ++ + AE+ +A F Sbjct: 273 NLECLQGSLNLDSYIRFFYDKTCSFFDYFANDSSIIFADEPNRLAEKGEA-VFTEFSESM 331 Query: 308 VDPMRP--LLPPQ-SLWLRVDELFSELKNWPRVQLKT-EHLPTKAANANLGFQKLPDLAV 363 V + +LP Q + EL + L V + T +H + L +K D+ V Sbjct: 332 VGRIEKGYILPSQMDVIYDYKELLANLSRRNSVLISTMDHKVMQ-----LAAKKKVDITV 386 Query: 364 QAQQ--KAPLDALRKFLETFDGP---VVFSVESEGRREALGELLARIKIAPQRIMRLDEA 418 ++ + L K L+ + V+ S R L + L ++ +D Sbjct: 387 KSVNPYNNNFEILIKDLQNWKRNGYRVILLSGSRTRAARLAQDLRDNELPAIYSEDVDRI 446 Query: 419 SDRGR-YLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAEL 477 +G +M G+ GF + L +I ESD+ G A +++ ++ I++ +L Sbjct: 447 PVKGEIVVMHGSVHRGFEYPLIKLVIISESDIFG---AEKKKKKKKPSYEGKQIQSFTDL 503 Query: 478 HIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAE 537 +IG VVH HG+G Y G+ +E ++ +Y+ L Y LY+ + L +I +YAG Sbjct: 504 NIGDYVVHENHGLGIYRGIEKIEVDKVSKDYIKLEYGGGGVLYILATGLDVIQKYAGADA 563 Query: 538 ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSF 597 L+KL W + K V+++A EL+++YA R AK G +F D + F + F Sbjct: 564 RKPKLNKLNSVEWKNTKAKVKGAVKEIAKELVELYATRQAKAGHSFCEDTVWQREFEEMF 623 Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 P+E T DQ +AI+ DM MDRL+CGDVG+GKTE+A+RAAF A+ + KQV LVP Sbjct: 624 PYEETDDQLRAIDDTKRDMESKKIMDRLICGDVGYGKTEIAIRAAFKAISDGKQVVFLVP 683 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 TT+LAQQHY+ F R N+P+ ++M+ RF++ +Q + L + +G++DILIGTH++L D Sbjct: 684 TTILAQQHYNTFSQRMMNFPISVDMLCRFKTPAQQKKTLENLKKGQLDILIGTHRVLSKD 743 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 ++FK+LGLLI+DEE RFGV HKE+IK M+ ++D+LTLTATPIPRTL+M++ G+RD+S++ Sbjct: 744 IQFKNLGLLIIDEEQRFGVTHKEKIKQMKGDIDVLTLTATPIPRTLHMSLVGIRDMSVLE 803 Query: 778 TPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEAR 837 PP RL ++TFV E++ ++REAI RE+ RGGQVYY++N V + + +A LVP+A Sbjct: 804 EPPVDRLPIQTFVLEHNDEIIREAINRELARGGQVYYVHNRVNGLDEITNTIARLVPDAN 863 Query: 838 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 897 +A HGQM E +LE++M +F + +VLV TTIIETG+DI NT+II+ AD GL+QL+ Sbjct: 864 VAFAHGQMHEHQLEKIMFEFINGEIDVLVSTTIIETGLDISNVNTMIIDNADQLGLSQLY 923 Query: 898 QLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGE 957 QLRGRVGRS+ ++A+L+ K + A+KRL+AI +LG+GF +A DLEIRGAG Sbjct: 924 QLRGRVGRSNRTSFAFLMYKRDKLLKEVAEKRLQAIKEFTELGSGFKIAMRDLEIRGAGN 983 Query: 958 LLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFI 1017 LLG +QSG ME +G+ LY ++L +AV LK E S ED + T +++ M + +P +I Sbjct: 984 LLGAQQSGHMEAVGYDLYCKMLNDAVKGLKG--EISDED--TFDTSIDMDMDAFIPSTYI 1039 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 + +L YKRIA + E E +++ E++DRFG +P LL+IA L+ A ++ + Sbjct: 1040 KNEMQKLDMYKRIAGIENEEEFMDMQEEMLDRFGDIPTSVNNLLNIALLKSMAHQVYVSN 1099 Query: 1078 L 1078 L Sbjct: 1100 L 1100 >UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5KKI8_9FIRM Length = 1115 Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/1020 (38%), Positives = 568/1020 (55%), Gaps = 77/1020 (7%) Query: 141 LRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ 200 L L + GY Q+ G++A RG ++D+FP+ E+P R++ + DEIDS+R+FD SQ Sbjct: 153 LEQDLTALGYERESQIEAPGQFAVRGGIIDVFPLAEEMPVRIELWGDEIDSIRMFDAKSQ 212 Query: 201 RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYW 260 R++E + I + PA E Sbjct: 213 RSIENISEITIYPASE-------------------------------------------- 228 Query: 261 QPLFFSEPLPPLFSYFPANTLLVNTGD---LETSAERFQADTLARFENRGVDPMRPLLPP 317 F + L YFP N L+ + L+ +AE +A+ +NR M+ Sbjct: 229 -NCFGNNGLVSFLKYFPENETLLFYDEPHRLQETAETVEAEYTESLKNRADAGMKEEGEE 287 Query: 318 QSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAP------- 370 + + ++ SE+ + + L T L +K F+ VQA+ P Sbjct: 288 ELRVFQTKDIISEMNRYSGIGLTT--LESKCGL----FKVRSVYTVQAKGVNPYNNSFEL 341 Query: 371 LDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLM-IGA 429 L K L+ VV S R + L E L ++ + G + G Sbjct: 342 LTRDLKRLKRNGYRVVLLSGSRTRAKRLAEDLRDYDLSSFYSEDMQREVKPGEIMAAYGY 401 Query: 430 AEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHG 489 A G+ + +I ESD+ G + ++++ I++ AEL G VVH HG Sbjct: 402 ASEGYEYPMLKFVVISESDIFGRKKKKKKRKKYEG----QRIQDFAELKPGDYVVHENHG 457 Query: 490 VGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDA 549 +G Y G+ +E I +Y+ + YA LY+PV+ + LI +YAG + L+KLG Sbjct: 458 IGVYKGIEKIEVEKIVKDYMKIVYAEGGVLYIPVAQMDLIQKYAGADAKKPRLNKLGTIQ 517 Query: 550 WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAI 609 W + + + + V+ VA +L+++YA R EGF + D + F + FPFE T DQ QAI Sbjct: 518 WGKTKSQVKKAVQIVAKDLVELYAVRQQSEGFVYGPDTVWQKEFEEMFPFEETDDQLQAI 577 Query: 610 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 669 DM MDRL+CGDVG+GKTE+A+RAAF AV KQV LVPTT+LAQQHY+ F Sbjct: 578 EDTKHDMESKKIMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVVCLVPTTILAQQHYNTF 637 Query: 670 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 729 R +PVRI+++ RFRSA EQ + + + +G +DIL+GTH++L DV FKDLGLLI+D Sbjct: 638 VQRLKEFPVRIDLLCRFRSAAEQKKTIEDTKKGFVDILVGTHRVLSKDVVFKDLGLLIID 697 Query: 730 EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF 789 EE RFGV HKE+IK ++ N+D+LTLTATPIPRTL+M++ G+RD+S++ P R+ ++T+ Sbjct: 698 EEQRFGVTHKEKIKKLKENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPNERMPIQTY 757 Query: 790 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERE 849 V EY+ +VREAI RE+ R GQVYY+YN V +I A R+ LVP+A +A HGQM+ERE Sbjct: 758 VMEYNDEMVREAITRELARDGQVYYVYNRVNDIADVAGRIQSLVPDANVAFAHGQMKERE 817 Query: 850 LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 909 LE +M DF + +VLV TTIIETG+DIP ANT+II+ AD FGL+QL+QLRGRVGRS+ Sbjct: 818 LEDIMYDFINGDIDVLVSTTIIETGLDIPNANTMIIQDADRFGLSQLYQLRGRVGRSNRM 877 Query: 910 AYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMET 969 AYA+LL K + A+KRL AI DLG+G +A DLEIRGAG LLGE QSG ME Sbjct: 878 AYAFLLYQRDKLLKEVAEKRLSAIREFTDLGSGIKIAMRDLEIRGAGNLLGEAQSGHMEA 937 Query: 970 IGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKR 1029 +G+ LY ++L AV LK G P E T T ++L + + +P+ +I + +L YKR Sbjct: 938 VGYDLYCKMLNEAVRQLKGG--PEAETFT---TLIDLNVDAYIPEYYIKNEYQKLDIYKR 992 Query: 1030 IASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEF 1089 IA+ ++E ELE++ ELIDRFG +P + LL IA L+ A + + +E +KG I F Sbjct: 993 IAAIESEEELEDMTEELIDRFGDIPKKVQQLLVIASLKSLAHSVYVTAIE--QKGEEIRF 1050 Query: 1090 A--EKNHVNPAWLIGLLQ--KQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEEN 1145 EK ++P+ + L K +R + P + + +K+ E V +R + E+ Sbjct: 1051 TMYEKAKIDPSGIPKFLDSYKNDLIFRAEEPPYFLYCRKGRNKKSNTENVLDTVRRILED 1110 >UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Actinobacteria (class) RepID=A9WU24_RENSM Length = 1278 Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/1117 (37%), Positives = 610/1117 (54%), Gaps = 87/1117 (7%) Query: 28 ATLVAEIAE---------RHAGPVVLI------APDMQNALRLHDEISQFTDQMVMNLAD 72 A L+AE+AE HAG V+ + + D+ ALR + + V + Sbjct: 115 APLLAEVAEGLAAAQANGDHAGVVLAVTATSRESEDLVAALRAY-----LPEDAVADFPS 169 Query: 73 WETLPYDSFSPHQDIISSRLSTLYQLPTMQRG------VLIVPVNTLMQRVCPHSFLHGH 126 WETLP++ SP D + RLS L +L G +++ PV ++Q + Sbjct: 170 WETLPHELLSPRSDTVGRRLSVLRRLKHGGMGTTGPLRIVVAPVRAVVQPIV-QGLADLE 228 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 + + GQR D + +L A Y VD V GE+A RG ++D+FP P R++FF Sbjct: 229 PVELSIGQRAPFDQVIRRLADAAYARVDMVTHRGEFAVRGGIIDVFPPTDPHPVRIEFFG 288 Query: 187 DEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTD------KAAIELFRSQWRDTFEVKRD 240 DE++S+R F V QRTL + P F ++ ++ +D+F Sbjct: 289 DELESMRWFAVADQRTLTSISGTIEHPKALFAPPCRELLITPEVQSKAAKLKDSFPAA-- 346 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV---------NTGDLETS 291 + ++++ G G+E P+ + + P+ + FP ++ V DLE + Sbjct: 347 -AAMLEKIAGGIAVEGMESLTPVLV-DSMVPVVAEFPPGSIAVVLEPERVRGRAHDLEAT 404 Query: 292 AERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANA 351 E F + + G PL Q+L F+ L L+ + Sbjct: 405 NEEFLEAAWSTASDGGA---APLDVSQTL---ASASFASLAQTRGAALRAGVSWWSVSAL 458 Query: 352 NLGFQKLPDLAV-----------QAQQKAPLDALRKFLETFDGP----VVFSVESEGRRE 396 + + P+L V Q L+ + + DG VV + + G + Sbjct: 459 GIDDETAPELDVLSVPAREPRGYQGNVAEMLEFIGSRVRGNDGGGQWRVVVATDGPGPAQ 518 Query: 397 ALGELLARIKIAPQRIMRLDEASDRGRY-LMIGAAEHGFVDTVRNLALICESDLLGERVA 455 L EL I R+ LDE G + A HGFV + L+ E+DLLG A Sbjct: 519 RLAELFHDADIPTARVDSLDEQPQLGIIEVTTAAVGHGFVLDGLKIGLLTEADLLGRSSA 578 Query: 456 RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITG--EYLMLTY 513 +D R+ + + +L G VVH +HG+GR+ + + G G EYL+L Y Sbjct: 579 SGTKDMRKMPSKRRNAVDPLQLRGGDFVVHEQHGIGRFLELIQRKVAGTDGSREYLVLEY 638 Query: 514 ANDAK------LYVPVSSLHLISRYAGGAEENAP-LHKLGGDAWSRARQKAAEKVRDVAA 566 A + L+VP L I+ Y GG +AP L K+GG W+ + KA + V+++A Sbjct: 639 APSKRGAPGDRLFVPTDQLDQITAYVGG---DAPALSKMGGSDWASTKNKARKAVKEIAG 695 Query: 567 ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLV 626 EL+ +Y+ R A GF+F D + ++FP+ TPDQ IN V +DM + + MDRLV Sbjct: 696 ELIRLYSARMASRGFSFSADTPWQRELEEAFPYVETPDQLTTINEVKADMEREIPMDRLV 755 Query: 627 CGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRF 686 GDVG+GKTE+A+RAAF AV + KQVAVLVPTTLLAQQHY+ F +RF+ +PVR++ +SRF Sbjct: 756 SGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHYETFSERFSGFPVRVKPLSRF 815 Query: 687 RSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMR 746 +S KE + VA G ID++IGTH+LL D FKDLGL+IVDEE RFGV HKE++K MR Sbjct: 816 QSGKEAKETAEGVANGSIDVVIGTHRLLSKDFAFKDLGLVIVDEEQRFGVEHKEQLKKMR 875 Query: 747 ANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREI 806 NVD+L ++ATPIPRTL M+++G+R+ S +ATPP R V T+V Y AI RE+ Sbjct: 876 NNVDVLAMSATPIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGPYTDKQASAAIRREL 935 Query: 807 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLV 866 +R GQV++++N V +I++ A + +LVPEARIA+ HGQM E LE+++ DF +RF+VLV Sbjct: 936 MREGQVFFVHNRVSSIERIAAHVQQLVPEARIAVAHGQMSESRLEQIIVDFWEKRFDVLV 995 Query: 867 CTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDA 926 CTTIIETG+DI ANT+I++ AD +GL+QLHQLRGRVGR +AYA+ L P K + A Sbjct: 996 CTTIIETGLDISNANTLIVDGADKYGLSQLHQLRGRVGRGRERAYAYFLYPAEKPLGEVA 1055 Query: 927 QKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDAL 986 +RL+A+A+ +LGAG LA DLEIRGAG LLG EQSG + +GF LY+ L+ AV Sbjct: 1056 LERLKAVAAHNELGAGMQLALKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRLVGEAVADY 1115 Query: 987 KAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVEL 1046 + E D+ ++EL + + LP D++P RL Y+++A+A + ++E+ EL Sbjct: 1116 RGETEDKAADM-----KIELPVNAHLPHDYVPGERLRLEAYRKLAAAASNAAIDEVLEEL 1170 Query: 1047 IDRFGLLPDPARTLLDIARLRQQAQKLGIR--KLEGN 1081 +DR+G P L+ + R R A+++G+ ++GN Sbjct: 1171 VDRYGEPPAAVVNLIAVDRFRVAAREVGLTDVAVQGN 1207 >UniRef50_B5YFB2 Transcription-repair coupling factor n=2 Tax=Dictyoglomus RepID=B5YFB2_DICT6 Length = 1070 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/1013 (35%), Positives = 574/1013 (56%), Gaps = 81/1013 (7%) Query: 76 LPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 LPY+ + RL + + ++ + +L+ + P + L +K G+ Sbjct: 93 LPYERPLRSPQVQGKRLKAISDIIYNNSFSIVASLKSLIYPLIPKENIEKRILKIKVGEE 152 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 ++R+ + L Y+ QV + GEY+ RG +LD+FP E P R++FF DEI S+R F Sbjct: 153 ITREKIEKFLAENLYQRTPQVEKIGEYSIRGGILDIFPPLYENPIRIEFFGDEISSIRFF 212 Query: 196 DVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPA 255 +++ +R+++ + + L P E DK +++ +K Y Sbjct: 213 NLEDKRSIKTTKEVILTPISELIEDKN---------EESYFLKNKEIKTY---------- 253 Query: 256 GIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSA--ERFQADTLARFENRGVDPMRP 313 LFSY P +T+LV + A E++ LA FE R P Sbjct: 254 ----------------LFSYLPKDTILVFENHKASLALLEKWTGKGLANFEKRRTKENLP 297 Query: 314 LLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDA 373 + L+L D EL+N+ K + L + +L F + + + Sbjct: 298 ----EGLYL-TD---YELQNFIS---KYQVLDLNSTEPDLVFTIYSPPSYRGTNEFFEKN 346 Query: 374 LRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHG 433 ++ FLE +FS Q I+R + +YL G Sbjct: 347 IKSFLENGWEVHIFS-------------------EHQDIIRTRLKNLNVKYLTEEKVREG 387 Query: 434 FVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRY 493 F+ + +I + ++ G++ R+ + + P ++L L G VVH+ +G+G + Sbjct: 388 FLWENEKVLVITDYEIFGKKRKRKPIRYEKGLKP----KDLYLLKDGDYVVHVNYGIGIF 443 Query: 494 AGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRA 553 G+ L+ + E++ + YAN++ LYVP+ +HLI RY + E + +L W Sbjct: 444 RGLKKLKIDDVEKEFIYIEYANNSFLYVPLEEMHLIQRYVSSSPEPPQISRLESHQWEET 503 Query: 554 RQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVL 613 ++K E +++A ELL +YAQR EGFAF D + SFP+ T DQ +A+ + Sbjct: 504 KRKVKESAKEIAEELLKVYAQRELTEGFAFSPDSPLQEELEASFPYVETEDQIKALKEIK 563 Query: 614 SDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRF 673 DM M+R++ GDVGFGKTE+A+RA+F AV + KQVA+LVPTT+LA QH+ FR+R Sbjct: 564 RDMESKKPMERVLIGDVGFGKTELALRASFKAVLDGKQVAILVPTTILAYQHWKVFRERL 623 Query: 674 ANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHR 733 +PV +E++SR + EQ +I+ + +G+IDI+IGTH++LQ DV+FKDLGL+IVDEEHR Sbjct: 624 EVFPVNVEILSRLKPKSEQKRIIERIRKGEIDIIIGTHRILQKDVEFKDLGLIIVDEEHR 683 Query: 734 FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREY 793 FGV KE K +VDIL L+ATPIPRTL+M +SG+R S++ TPP RL ++TFV EY Sbjct: 684 FGVLQKESFKKKYPHVDILYLSATPIPRTLSMVLSGIRQFSVLETPPENRLPIQTFVVEY 743 Query: 794 DSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERV 853 + +++E I RE+ RGGQVYY+ ND+E ++K E L +LVPEA +I HG+M + EL V Sbjct: 744 NPEIIQEGIRRELERGGQVYYVCNDIERLEKIKEELTKLVPEATYSIAHGKMDDEELTEV 803 Query: 854 MNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 913 M++F+ + +VL+ TTIIE+GID+P ANT+ +E A+H GLAQL+QLRGR+GRS+ QAYA+ Sbjct: 804 MSNFYDGKIDVLIATTIIESGIDVPNANTLFVENAEHMGLAQLYQLRGRIGRSYKQAYAY 863 Query: 914 LLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFS 973 L K ++ D+ KRLEA+ LG+G LA DLEIRGAG++LG+EQ G + ++GF Sbjct: 864 FLHAPLKKLSLDSIKRLEALKEFSSLGSGLRLALRDLEIRGAGKILGKEQHGHINSVGFY 923 Query: 974 LYMELLENAVDALKAGREPSLEDLTSQQTEVELRM----PSLLPDDFIPDVNTRLSFYKR 1029 LY++LLE A++ LK + S++ +V R+ P+++P+ +I + R+ +Y++ Sbjct: 924 LYLQLLEEAINELKNSQG------KSEKNKVNCRITHPFPAIIPEYYISQSSDRIYYYQK 977 Query: 1030 IASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNE 1082 +A + N++++I+ EL D +G +P+P L +++++ A+K+GI K+E +E Sbjct: 978 LAHLEDINDIDKIRKELEDIYGPIPEPVENLFILSQIKFFAEKIGIEKIEISE 1030 >UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Leptospira RepID=Q04S99_LEPBJ Length = 1176 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/1071 (35%), Positives = 611/1071 (57%), Gaps = 49/1071 (4%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDS 80 +T + + L + + ++ +V+++ + A L E F ++ L E LPY+ Sbjct: 62 VTEGSHSILASSLFQKLNRTIVVVSENNTAAEFLFREALSFISASDLVYLPGQEVLPYEY 121 Query: 81 FSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDA 140 ++ R+ + ++ ++ V ++ + P + G A+ ++KG+ + ++ Sbjct: 122 LRYPSEMKRERIKAIGKILNGGPSLIFTSVAGFLKTLPPVQTMQGRAITLEKGKEIDLES 181 Query: 141 LRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ 200 L QL GY+ D GE++ +G +LD++ S+ P R+D F +EI+S+R FD D+Q Sbjct: 182 LLIQLIDLGYKRTDVCETFGEFSLKGGILDIYSSYSQEPVRIDLFGEEIESIRTFDPDTQ 241 Query: 201 RTLEEVEAINLLPAHEF---PTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGI 257 R++ ++ LLP E+ K + + + + PE Y + +P Sbjct: 242 RSMVDLNRAVLLPVDEYILSDEQKKEYQNILKYYSSSLHIPEIPEAGYGIYYEELVPLVR 301 Query: 258 EYWQPL-FFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLP 316 E L +FSEP P+ + N+ VN L + + L+ FE R + + P Sbjct: 302 ENHGILSYFSEP--PILLFPSPNS--VNQRIL-----HLEREYLSLFEKRSQEVL--CAP 350 Query: 317 PQSLWLRVDE--LFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDAL 374 P L +E + SEL V L P ++ ++ P A + + + + + Sbjct: 351 PDKLLSFGEEFRVLSELVGLSFVGLP----PRNGSDLVSCLKEAP--AFKGKIREVREKI 404 Query: 375 RKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR------GR----- 423 + +V + E + + L L + + I+ L+E + G+ Sbjct: 405 SELRAEGGWKIVLTSSFEAQTKRLQGLFEK-----EGIVLLNEGATEPIPFHLGKHKSDA 459 Query: 424 YLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPV 483 +L++ +GF+ + + ++ E+D+ G R+ + ++ +++ +L G PV Sbjct: 460 FLVLSELRNGFIFENQKILILSENDIFGREYKRKTRFKKQN---SKALQSFIDLKEGDPV 516 Query: 484 VHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLH 543 VH+ HGVGR+ + AGG ++L L YA L+VP+ + LI RY GG E + L Sbjct: 517 VHIHHGVGRFLKIERTNAGGKERDFLKLEYAGGDSLFVPLDQISLIQRYIGGTE-SPRLD 575 Query: 544 KLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTP 603 LG + W + + + + V +A +L+ +Y+ R +G+AF D + F F +E TP Sbjct: 576 SLGKNTWKKTKDRVQKAVETLAEDLVQMYSNRLKLQGYAFPPDTIYQEEFEAEFEYEETP 635 Query: 604 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQ 663 DQ +AI AV D+ + MDRLVCGDVG+GKTEVA+RAAF +Q+ +L PTT+LA Sbjct: 636 DQIEAIEAVKKDLESSVPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIMMLAPTTILAL 695 Query: 664 QHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 723 QHY+ F++RF N+P+R+E++SRF+++ E +IL++ + GKID++IGTH +L S +K K+L Sbjct: 696 QHYNTFKNRFRNYPLRVELVSRFKTSAEIREILSDFSLGKIDMIIGTHAILSSKLKPKNL 755 Query: 724 GLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 783 GLLI+DEE RFGV HKE IK + VD+LTLTATPIPRTL+MA++G+R+LSIIATPP R Sbjct: 756 GLLIIDEEQRFGVNHKEAIKRFKNLVDVLTLTATPIPRTLHMALTGIRELSIIATPPKNR 815 Query: 784 LAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHG 843 +V+T+V E D ++ EAI EI R GQV+YLYN VE I++ + L E+VPE I I HG Sbjct: 816 QSVETYVLEEDEDLIAEAIRNEIQRDGQVFYLYNRVETIEQETKYLGEIVPEVSIGILHG 875 Query: 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903 QM E E+E + DF+++++++LV TTIIE+GID+P NT+ ++RAD FGL+QL+Q+RGRV Sbjct: 876 QMTEDEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFGLSQLYQIRGRV 935 Query: 904 GRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQ 963 GRS +A+A+LL P + +T A+KRL I ++LG+GF +A DLEIRGAG LLG+EQ Sbjct: 936 GRSDRKAFAYLLLPKDRVVTEQAEKRLNTIYEYQELGSGFKVAMRDLEIRGAGNLLGKEQ 995 Query: 964 SGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTR 1023 SG + +GF LY+ +LE A+ +K G E +E TS V L +P+ +I D + Sbjct: 996 SGDIMEVGFDLYVRMLEEAIARIK-GEEVVVEVRTS----VTLNTNFFIPETYISDTRQK 1050 Query: 1024 LSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 + FYK+ A+ E++E+ E+++RFG P+ ART + + ++R A LG Sbjct: 1051 IEFYKKFEGARDLQEIDEVYREMVERFGDPPEDARTFILLEKIRTLASNLG 1101 >UniRef50_B8IZ90 Transcription-repair coupling factor n=3 Tax=Desulfovibrio RepID=B8IZ90_DESDA Length = 1179 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 416/1141 (36%), Positives = 611/1141 (53%), Gaps = 65/1141 (5%) Query: 1 MPEQY--------RYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNA 52 +PE+Y ++ + + E ++ E +G A +A A VVL+A D + Sbjct: 14 VPEKYAVWNIFMSNFSTVLASKEGQVYIERSGMATRCRLAAEAFTQGRTVVLVARDREEY 73 Query: 53 LRLHDEISQFTDQMVMNLAD-------WE----TLPYDSFSPHQDIISSRLSTLYQLPTM 101 ++ FT ++ +LAD W TLP S + S+RL+ LY L Sbjct: 74 NSARALLTLFTPEL--SLADKSVSEPQWNSPCLTLPPLSQWQDRASWSARLAALYGLAQG 131 Query: 102 QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGE 161 + ++ V +L+ R P F L ++KG + + L Q GY V V GE Sbjct: 132 RPRCIVCSVESLLLRHIPLDFFAARNLDLRKGSDYAPELLLDQAVEWGYERVPMVTRPGE 191 Query: 162 YATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDK 221 A RG +LD+FP G P RL+FF D +D +RVFD +SQR+L+ + + LLPA D Sbjct: 192 MARRGDILDIFPTGHVKPVRLEFFGDTLDEMRVFDAESQRSLQGCDELVLLPASPLALDA 251 Query: 222 AAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF-SYFPANT 280 ++ R + F R E+ K G+ + P LF + P ++ Sbjct: 252 KSLAAARERCDRMFAEGRISENECYSFKKSLDGGGLGLLPGSVLASP--SLFEDWLPKDS 309 Query: 281 LLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRV--- 337 L + G+ SA+ + D + R PL P SL LR + + RV Sbjct: 310 LWLLPGE-SDSADALR-DGRLNLKERLEAADAPLPQPASLALRKSSQPAPWNTFQRVYAE 367 Query: 338 ------QLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGP---VVFS 388 + + LP + ++ + LP Q P L L+ + +V S Sbjct: 368 PLVMGVEERGLDLPERPLHSFIDLFPLP-----GAQDRPWQHLAAGLKEWKSSRRQIVLS 422 Query: 389 VESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESD 448 S R +L + I P +R RG + ++ G + V + L+ D Sbjct: 423 FSSGRSRAKFLKLAEQDGIVPA--LRY-APEQRGLFALVSPFRSG-AELVWDDVLVLGED 478 Query: 449 LLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY 508 +L + + + S R + + +L G +VH ++G+GR+AG+ L+ ++ Sbjct: 479 ILYPKAEKTPRVSSRVFKG---LDSFDDLKPGDLLVHRDYGIGRFAGLHHLDLNAAANDF 535 Query: 509 LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAEL 568 L++ Y+ KLYVP L LI R+ G L +LGG AW ++KA + + +AA+L Sbjct: 536 LLVEYSGRDKLYVPADRLGLIQRFKGTEGVEPALDRLGGAAWVAGKEKARKAIEKIAADL 595 Query: 569 LDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCG 628 +++YA R +GF + E Y F +F FE TPDQA+AI VL DM +P MDRLVCG Sbjct: 596 VEMYAYRKVTKGFRYDPPGELYHEFEATFGFEETPDQAKAIQDVLDDMDRPRPMDRLVCG 655 Query: 629 DVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRS 688 DVGFGKTEVA+RAAF A +QVA+L PTT+LA+QHY FR R A +PV + ++SRF Sbjct: 656 DVGFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHYQTFRARLAGFPVNVGLLSRFVP 715 Query: 689 AKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRAN 748 Q ++L A G+IDILIGTH++L SDVK +L LL++DEE RFGVRHKE++KA++ N Sbjct: 716 RPRQKEVLKAAAAGQIDILIGTHRILSSDVKLPNLTLLVLDEEQRFGVRHKEKLKALKKN 775 Query: 749 VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILR 808 VD+LTLTATPIPRTL ++MSG+R+LSII T P R V + V D V+R+ + REI R Sbjct: 776 VDVLTLTATPIPRTLQLSMSGIRELSIIETAPQDRKPVASAVLRKDDNVLRKVLEREIER 835 Query: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868 GQV+++YN V+ +++ AE + LVP+AR+ + HGQM E ELE M+ F H +VLVCT Sbjct: 836 EGQVFWVYNRVQGLERVAEYVRGLVPDARVGMAHGQMSEAELEDTMHKFWHGELDVLVCT 895 Query: 869 TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQK 928 +I+E+G+D P ANT+++++A FGL QL+QLRGRVGRS QAYA+ + P + +T A++ Sbjct: 896 SIVESGLDFPRANTLVVDQAQMFGLGQLYQLRGRVGRSDRQAYAFFVVPDAERLTAVAEE 955 Query: 929 RLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKA 988 RL I ++ LGAGF +A DL +RGAG +LGE QSG M +G LY+E+LE AV LK Sbjct: 956 RLRIILDMDYLGAGFQVAMEDLRLRGAGNILGEVQSGHMCRVGLDLYLEMLEEAVGRLKG 1015 Query: 989 GREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELID 1048 + E L S +TE+ L +P+ +P +I D RL YK + SA+ EEI + + D Sbjct: 1016 ----TPESLVS-ETELTLGLPAHIPASYIDDGRERLRCYKALTSAQGGAAREEIALSIRD 1070 Query: 1049 RFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQP 1108 RFG P+ L + +Q +L ++K + + HV W G QP Sbjct: 1071 RFGPFPEELANFLAVLDFKQFLTELQVQKAD----------VHREHVRLTWPDGQTAVQP 1120 Query: 1109 Q 1109 + Sbjct: 1121 E 1121 >UniRef50_A4A0Y1 Transcription-repair coupling factor n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A0Y1_9PLAN Length = 1077 Score = 640 bits (1652), Expect = 0.0, Method: Compositional matrix adjust. Identities = 389/1089 (35%), Positives = 611/1089 (56%), Gaps = 93/1089 (8%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL 70 + AG + + + G+ACA + A I AGP++++ P + + + D + F+ ++ Sbjct: 34 IAAGRKGTIEGVWGSACALITAAIEPDIAGPLLVVCPSLADIDDVSDALRTFSSAEIVQF 93 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQLP-TMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 WE+ + H +I RL L QL Q +++ + +L+Q V + + ++ Sbjct: 94 PAWESDRSERLL-HDEIYGRRLRVLKQLTHGPQPAIIVTSIESLLQPVPSAANVAANSRR 152 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 + G +L + L L + V GE++ RG +LD+F E P R++ F DEI Sbjct: 153 VAVGDQLDVEELAQWLVRHKFHSTSAVELPGEFSLRGGILDVFAPDWEQPARIELFGDEI 212 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVS 249 +S+R F++ +QR+L P + I + R Sbjct: 213 ESIRQFEIGTQRSLH-------------PLETVEITVLR-------------------YG 240 Query: 250 KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENR-GV 308 KG Q FS+ LP + +L+ ++ SAE++ D L + E++ G+ Sbjct: 241 KG---------QTGHFSDYLPT-----ASACVLIELERMKDSAEQY-LDRLEKIEDKFGL 285 Query: 309 -DPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQ 367 + ++ L P SL L + + HL A+ L F+ + + + ++ Sbjct: 286 HETLQKLQPLGSLSLS--------------GVASGHLD---ASLTLHFESVEQFSGEIER 328 Query: 368 -KAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLM 426 + L+AL + + ++ E+E R L E+ ++ QR RL Y Sbjct: 329 VRGELEALSNGQDVY---IICQTEAEIDR--LSEVFEGGEL--QRAGRL--------YFA 373 Query: 427 IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 +G GF ++ L+ D L RV R+R +R+ +I + +L G VVHL Sbjct: 374 LGRLPQGFRYREESVVLVS-GDQLFHRVRRQRPATRKL---GKVIDSFLDLRKGDLVVHL 429 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLG 546 HG+GRY G+ +E E+L + + K+YVP S + L+ +Y GG++ PL K+G Sbjct: 430 AHGIGRYRGLKKIEKQRQVEEHLEIEFHGGTKVYVPASKVELVQKYVGGSKSRPPLAKIG 489 Query: 547 GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606 G W + ++ + V D+A ELL++ A R ++ G AF D + F SFP+E T DQ Sbjct: 490 GVTWQKQKKAVEQAVHDLAGELLEVQAMRRSRPGIAFSADTLWQREFDLSFPYEETTDQL 549 Query: 607 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 666 AI + DM QP MDRL+CGDVGFGKTEVAMR AF AVDN QVA+LVPTT+LA+QHY Sbjct: 550 TAIGNIKFDMEQPRPMDRLLCGDVGFGKTEVAMRGAFKAVDNGYQVAILVPTTILAEQHY 609 Query: 667 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 + R+R A +P I +SRF SAKEQ ++ + +G IDI++GTH+L DV F++LGL+ Sbjct: 610 KSLRERMAEFPFTIARLSRFASAKEQRDVVKGLKDGTIDIVVGTHRLASKDVSFQNLGLV 669 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 ++DEE RFGV KER+K +R VD+LT+TATPIPRTL+M++ G+RD+S + TPP R+AV Sbjct: 670 VIDEEQRFGVEIKERLKQLRTTVDVLTMTATPIPRTLHMSLVGVRDISNLETPPLDRVAV 729 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 +T V + ++R A+LRE+ RGGQ+++++N V++I+ A +L +VPEA+I IGHGQM Sbjct: 730 ETKVSRWGDELIRHAVLRELSRGGQIFFVHNRVQDIELIAAKLQRIVPEAKIGIGHGQMG 789 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 E LE+VM DF +F++L+ TTI+E+G+DIP ANTI I+ A+ +GL++LHQLRGRVGR Sbjct: 790 EGALEKVMTDFIAGKFDLLLATTIVESGLDIPNANTIFIDEANRYGLSELHQLRGRVGRY 849 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 H+AY ++L + ++ A KRL AI +GAGFA++ DLEIRGAG +LG +QSG Sbjct: 850 KHRAYCYMLLQPGRHLSPVAAKRLHAIEEFSHMGAGFAISMRDLEIRGAGNILGTQQSGH 909 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026 + T+G+ LY +LLE AV +K R PS + +V+L + LPDD++ D+ ++ Sbjct: 910 IATVGYELYCQLLETAVRRMK--RMPSKMTI---DVDVDLPGETYLPDDYVNDMRQKIDL 964 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGV 1086 Y+R+ ++ +L +K E+ DRFG PDP +L + ++ A I + E+ V Sbjct: 965 YRRMTRVASDEDLTNLKEEMQDRFGPFPDPVERMLRMTEIKLDAAFWQINAIFLEEEYLV 1024 Query: 1087 IEFAEKNHV 1095 ++++++ V Sbjct: 1025 LQYSDRGRV 1033 >UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bacteria RepID=C3RLI7_9MOLU Length = 1144 Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/1031 (35%), Positives = 599/1031 (58%), Gaps = 18/1031 (1%) Query: 42 VVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM 101 +++I P+ A L+ +IS ++ + E+ ++ + +++ R+ LYQL T Sbjct: 47 IIVIKPNQYEANLLYQQISLINEKDSLFFPVDESYRIEALASSPELLGQRIDALYQLTTD 106 Query: 102 QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGE 161 Q +LI L++ + + L +K G ++ L+ L AGY +V + Sbjct: 107 QPKILITHGQALVRYLPSRQLFLDNCLNLKTGMQIDIYDLQKLLIKAGYTSAPRVDQPFY 166 Query: 162 YATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDK 221 ++ RG ++D+F + + P R++FFDDEID++R ++ +SQRT+E+V+ + ++PA + D+ Sbjct: 167 FSKRGGVIDVFSIQYDNPLRIEFFDDEIDNIRFYNQNSQRTIEKVKEVTIIPASDILYDE 226 Query: 222 AAIELFRSQWRDTFEVK-RDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT 280 + S+ D + + + + +YQ+ + E + S + F+ F Sbjct: 227 QEVPAVLSKINDLRDRQIEELDELYQEDYLSKVSIDQENLRNHDTSFTMYGYFNLFNQTA 286 Query: 281 LLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVD--ELFSELKNWPRVQ 338 L++ D + D ++N + S+ + LF +L + + Sbjct: 287 SLLDYLDTPLIIQANNHDINFAYKNYLEENHYYYQELASIGKTIKGLNLFRDL--YEVID 344 Query: 339 LKTEHL-PTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREA 397 K+ + P ++ ++ F + + ++ +R +L+ VV +++ + + + Sbjct: 345 RKSVNFKPFAQSDKDVLFNARAIMINNDDEAMIINQIRAYLKL--SKVVVALDDDHQLKL 402 Query: 398 LGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARR 457 + EL R ++A I DE G + + G + +I ++L R ++ Sbjct: 403 MTELFDRHEMAYTLIGIKDEIYP-GLNIAVNKIGFGIELVDEKIVIISANELFKTRNIKK 461 Query: 458 RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDA 517 + + ++++ EL+IG VVH HG+G+Y G+ TLE G +YL + YA D Sbjct: 462 PKYFKY--KNAKVLKDYQELNIGDYVVHDNHGIGQYLGIKTLEVQGFHKDYLYVAYAGDD 519 Query: 518 KLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAA 577 LY+PV +I +Y+ + ++KLGG W + + KA KV D+A +L++IY+ R Sbjct: 520 TLYIPVEQFKMIRKYSSNEGKVPKINKLGGSQWQKTKAKARSKVDDIADKLIEIYSARIN 579 Query: 578 KEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV 637 + G+AF D E F SF +E T DQ +++ + +DM + MDRL+CGDVGFGKTEV Sbjct: 580 QPGYAFPSDSEIQLEFERSFGYELTVDQLRSVEEIKADMEKSQPMDRLLCGDVGFGKTEV 639 Query: 638 AMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILA 697 A+RAAF A+ +KQVA L PTT+L+ QHY RF ++PV+I +++RF S KE+ QIL+ Sbjct: 640 ALRAAFKAILGNKQVAFLCPTTILSMQHYKTMIARFKDFPVKIALLNRFTSTKEKKQILS 699 Query: 698 EVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTAT 757 ++ G ID+L+GTH++L D+ FKD+GLL +DEE RFGV+ KE+IK R +D+LTLTAT Sbjct: 700 DLKLGNIDLLVGTHRILSKDIVFKDIGLLCIDEEQRFGVKQKEKIKEYRKTIDVLTLTAT 759 Query: 758 PIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYN 817 PIPRTL M++ G+R LS I TPP R V+T+V E +++++++ I RE+ R GQV+YLYN Sbjct: 760 PIPRTLQMSLMGIRGLSQIETPPKNRQPVQTYVIEKNNVLIKQIIERELARDGQVFYLYN 819 Query: 818 DVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 877 I A + VP AR+A+GHGQM + ELE VM F ++ FNVLVCTTIIETGIDI Sbjct: 820 RTSQIANVAYNITLSVPGARVAVGHGQMDKNELEDVMMRFVNKEFNVLVCTTIIETGIDI 879 Query: 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 P ANTII+E AD FGL+QL+Q++GRVGRS+ AYA+LL K + +A KRL+AI Sbjct: 880 PNANTIIVEDADKFGLSQLYQIKGRVGRSNRGAYAYLLYNPTKVLNEEASKRLKAIKEFT 939 Query: 938 DLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDL 997 +LG+G+ +A DL IRG+G++LG QSG +++IGF +YM++L++A++ K G+ ED+ Sbjct: 940 ELGSGYKIAMRDLAIRGSGDILGGTQSGFIDSIGFEMYMKILQDAINE-KMGK----EDV 994 Query: 998 TSQQ--TEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPD 1055 +++ V +++ +P D++ +L Y+R+ +AKT + ++ +K E ID +G LP+ Sbjct: 995 EAEKEIKSVNVKVDGYIPHDYVSSDIEKLELYQRLDNAKTISGVDHLKSEFIDYYGKLPE 1054 Query: 1056 PARTLLDIARL 1066 TL++ +L Sbjct: 1055 EVSTLVEKRKL 1065 >UniRef50_A6CB65 Transcription-repair coupling factor n=2 Tax=Planctomyces RepID=A6CB65_9PLAN Length = 1112 Score = 640 bits (1650), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1098 (35%), Positives = 605/1098 (55%), Gaps = 81/1098 (7%) Query: 8 TLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMV 67 T +++G+ + G +CA A IA ++++ P + +++ F + Sbjct: 29 TAALRSGQSGTIDGAWGGSCALAAASIATALDSVLLIVLPRLSEIDEFTGDLASFLGTIP 88 Query: 68 MNLADWETLPYDSFSPHQDIISSRLSTLYQL-------PTMQRGVLIVPVNTLMQRVCPH 120 WETLP D + RL L +L T Q V++ L+Q V Sbjct: 89 EIFPAWETLP-DEHDVADTVFGGRLRVLSRLQHSGGNESTPQ--VIVTSFPALLQPVPSR 145 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 ++ G + DA L G+ + GE++ G +LDL+ S LP Sbjct: 146 KQREAATRRIQVGDEIDTDAFMKWLLERGFERTTAIQLPGEFSMHGGILDLYSPDSALPI 205 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R++FF DE++S+R FDV++QRTLE + ++L P + +L ++ RD Sbjct: 206 RIEFFGDEVESIRQFDVETQRTLETCQQVDLTLISPVPASVSGRQL-QTPNRD------- 257 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL 300 GT + + LPP A L+ +L +R+ L Sbjct: 258 --------EDGTTSESL--------LDNLPP-----EACIALIELPELIDEGKRY----L 292 Query: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 360 R EN P+ L+ V + ++P V + + + +L + + Sbjct: 293 DRLEN-----------PRGLF-SVPATMARCTDFPSVTIAPISAESTEISCHLQIESVER 340 Query: 361 LAVQAQQKAPLDALRKFLETFDGP---VVFSVESEGRREALGELLARIKIAPQRIMRLDE 417 Q + + L + GP V+ ++G ++ L ELL ++ + Sbjct: 341 FTRSKSQ------MLEELASIIGPQDTVLVCCHNQGEQDRLQELLDESEL---------D 385 Query: 418 ASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAEL 477 S+R + IG GF +L ++ + +L G R + R+ I + +L Sbjct: 386 LSERVKTC-IGNLALGFRIVPEHLVVLSDHELFGRADIRHKPRKRKV--ESRAIDSFLDL 442 Query: 478 HIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAE 537 ++G VVHL HG+ R+ G+ LE G E+L L + + ++YVPVS +HL+ +Y GG + Sbjct: 443 NVGDFVVHLSHGIARFRGLELLEKEGYREEHLSLEFRDKVQMYVPVSLVHLVQKYIGGGK 502 Query: 538 ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSF 597 L KLG +W+ ++KAAE VRD+A+++L + AQR+ + G ++ D + F SF Sbjct: 503 HVPRLSKLGTKSWASKKEKAAEAVRDMASDMLRLQAQRSGQPGISYPPDSHWQKEFEASF 562 Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 P+ T DQ AI+ V DM + MDRL+CGDVG+GKTEVA+RAAF A+D KQVAVLVP Sbjct: 563 PYTETSDQLHAISDVRHDMERAQPMDRLICGDVGYGKTEVAIRAAFKAIDAGKQVAVLVP 622 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 TT+LA+QH F +R A++P+ IE +SRF+S KEQ IL +A G +D++IGTH+L+Q D Sbjct: 623 TTVLAEQHTRTFSERMADYPITIEGLSRFKSKKEQRAILEGMAAGSVDLVIGTHRLIQKD 682 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 +KFKDLGLLI+DEE RFGV KE +K +R +D+LTL+ATP+PRTL+M++ G+RD+S + Sbjct: 683 IKFKDLGLLIIDEEQRFGVEAKEMLKRLRLQIDVLTLSATPVPRTLHMSLLGIRDISNLT 742 Query: 778 TPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEAR 837 T P R+ ++T + +D ++R A++RE+ R GQVY+++N V ++QK A+R+ ++VPEA Sbjct: 743 TAPRDRVPIETRITRFDPELIRHAMVRELNRNGQVYFVHNRVHDLQKYADRIQQIVPEAS 802 Query: 838 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 897 I IGHGQM+E ELE M +F + ++ VCTTIIE+G+DIP ANTI I A + GL+ LH Sbjct: 803 IGIGHGQMKETELEAAMLNFVSGKVDIFVCTTIIESGLDIPNANTIFIHDAGNHGLSDLH 862 Query: 898 QLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGE 957 QLRGRVGRSHH+AY +LL + +T A KRL+AI +LGAGF +A DLEIRGAG Sbjct: 863 QLRGRVGRSHHRAYCYLLLRDGQMLTPIAAKRLKAIEEYSELGAGFKIAMRDLEIRGAGN 922 Query: 958 LLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFI 1017 +LG EQSG + +G+ LY +LLENA LK EP E ++L + LP D+I Sbjct: 923 ILGTEQSGHIAAVGYELYCQLLENACRKLK--NEPIRE---HHHVAIDLPCTAYLPSDYI 977 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 P ++ Y+++++ ++ EL ++ E+ DRFG +P PAR LL + L+ +Q+ + Sbjct: 978 PPGRIKIELYRKLSAVRSLEELNALEEEMEDRFGPIPHPARQLLILKELQILSQRWQVDS 1037 Query: 1078 LEGNEKGGVIEFAEKNHV 1095 + V+ + +KNH+ Sbjct: 1038 IRLENNFAVLGYRDKNHI 1055 >UniRef50_C2KSG9 Possible transcription-repair coupling factor n=2 Tax=Mobiluncus mulieris RepID=C2KSG9_9ACTO Length = 1172 Score = 636 bits (1641), Expect = e-180, Method: Compositional matrix adjust. Identities = 415/1107 (37%), Positives = 606/1107 (54%), Gaps = 99/1107 (8%) Query: 42 VVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM 101 V++ P + A L ++S +T + V DWETLP++ SP D ++ R+ L++L Sbjct: 41 TVILTPSGRGAEELARDLSCWT-RGVEVFPDWETLPHERLSPRTDTMARRIWALHRLTHP 99 Query: 102 QR-------------------GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALR 142 + L+VP+ + V L + G+ RD + Sbjct: 100 EAFGTEGTNSEVGESAEHNPIKFLVVPMRAALAPVN-TKILSYPLFKAQVGKAYGRDEMS 158 Query: 143 TQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRT 202 L + GY + V+ G+Y+ RG ++D+F S P R++ F DEIDS+R F V QRT Sbjct: 159 RDLAALGYERTELVVTRGQYSLRGGIVDVFSAVSPHPVRIELFGDEIDSIRPFAVSDQRT 218 Query: 203 L-EEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQ 261 +E +++ EF D+ A R I ++G G+E Sbjct: 219 FNQEFQSVTAPACREFLLDETA----RVHAASLAAQLPQAAEILNLAAQGIYSEGLESLG 274 Query: 262 PLFFSEPLPPLFSYFPANTLLVNTGDL-----------ETSAERFQADTLARFENRGVDP 310 L +E + PLF P LV T DL ET+AE A A + + Sbjct: 275 ALLGAE-MKPLFELLPPGARLVAT-DLPRLEARAVELGETTAEFLAASWSAAADGSEI-- 330 Query: 311 MRPLLPPQSLWLRVDEL-FSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKA 369 PL + +L +D L SE K + L+ T + G + +P Sbjct: 331 --PLEINTASFLDLDALRVSEAKAGMKT-LRISPFATHESATTSGAETVP---------L 378 Query: 370 PLDALRKFLETF------DGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG- 422 P + T VV + S G + L LLA I Q LD +R Sbjct: 379 PTTGATGIISTIRERAREHWTVVIAATSNGMVQRLHRLLAENDIPAQVSADLDAEPERSG 438 Query: 423 -RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDS-------RRTINPDTLIRNL 474 ++ + GF L +I E++ LG+R AR + R+TI+P Sbjct: 439 KTWVTVAPITEGFALAEAKLLVISEAEALGKRQARHHEQKVKLPTRRRKTIDP------- 491 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAG----GITGEYLMLTYANDAK------LYVPVS 524 L G+ VVH +HG+GR+ + G + EY++L YA + L+VP Sbjct: 492 LSLSPGEYVVHAQHGIGRFVKLEKRTIGKGNKATSREYVVLEYAPSQRQGSKDLLWVPTD 551 Query: 525 SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 SL ++S+Y GG E L K+GG W++A+QKA + V+D+A EL+ +YA R + +G AF Sbjct: 552 SLDMLSKYVGG--ETPTLSKMGGTDWNKAKQKARKAVKDIARELVRLYAVRQSSKGHAFS 609 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 D + DSF + TPDQ I+ V +DM +P+ MDRL+CGDVG+GKTE+A+RAAF Sbjct: 610 PDTPWQRELEDSFEYVETPDQLTTIDEVKADMEKPVPMDRLLCGDVGYGKTEIAVRAAFK 669 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 AV + KQVAVL PTTLL QH + F++RFA +P+ + +SRF + KE T+I A++A+GKI Sbjct: 670 AVQDGKQVAVLAPTTLLVSQHLETFQNRFAAFPITVAALSRFTTVKEATRIKADLADGKI 729 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 ++++GTH LL V+FKDLGL+++DEE RFGV HKE +KA+R NVD+L ++ATPIPRTL Sbjct: 730 EVVVGTHALLSGKVRFKDLGLVVIDEEQRFGVEHKEALKALRTNVDVLAMSATPIPRTLE 789 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 MA++G+R LS + TPP R V T+V Y V AI RE+LR GQV+Y++N V++I + Sbjct: 790 MAITGIRGLSTLTTPPEERHPVLTYVGAYSDRQVAAAIRREMLRDGQVFYVHNRVQDIAR 849 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 A+ L LVPEARI +GHGQM E +LE+VM DF +Q F+VLV TTI+E G+D+ ANTII Sbjct: 850 VAKHLQSLVPEARIRVGHGQMPETQLEQVMMDFWNQEFDVLVSTTIVENGLDVTNANTII 909 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 I+RA+ GL+QLHQLRGRVGR + YA+ L P ++ A +RL+ I S LGAG A Sbjct: 910 IDRAERMGLSQLHQLRGRVGRGRERGYAYFLYPGGDTLSETAFERLKTIGSNTSLGAGMA 969 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 +A DLEIRGAG LLG EQSG + +IGF LY+ ++ AV A G EP ++ T V Sbjct: 970 IAQKDLEIRGAGNLLGGEQSGHIASIGFDLYVRMVGEAVAAYN-GEEP------AEDTAV 1022 Query: 1005 ELRMP--SLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLD 1062 L +P + +P+D++ + RL Y R+++A + E++++ E+ DR+G P + L + Sbjct: 1023 NLEIPVDAYIPEDYLEAQSLRLDAYTRLSNATLDEEIDQLLDEMDDRYGRPPSSVQRLGE 1082 Query: 1063 IARLRQQAQKLGIRKLEGNEKGGVIEF 1089 +A+LR A+K G+R++ +G I F Sbjct: 1083 LAKLRNLARKYGLREI--GVRGKFIRF 1107 >UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamily II helicase) n=2 Tax=Clostridiales RepID=C4Z4L4_EUBE2 Length = 1206 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 363/999 (36%), Positives = 573/999 (57%), Gaps = 36/999 (3%) Query: 106 LIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATR 165 ++ ++ + + P + +KKG L + + +L + G+ V G++A R Sbjct: 137 IVTTIDGISDMLLPVDRFKRAVINLKKGDILDVEDMAKKLTAMGFERFGMVEAKGQFAIR 196 Query: 166 GALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF----PTDK 221 G ++D+F E P R++ +DDEIDS+R FD DSQR++E ++ + PA EF + Sbjct: 197 GGIIDIFSYTDEAPVRIELWDDEIDSIRAFDADSQRSIENYKSYTVFPATEFLFTEDEIE 256 Query: 222 AAIELFRSQWRDTFEV------KRDPEHI-----YQQVSKGTLPAGIEYWQPLF-FSEPL 269 IE R + + ++ KR E I ++ L G +Y + ++ F++ + Sbjct: 257 QGIEKIRHEKDEQMKLFGADKRKRTKEQIEAGNHLNRMFDDALRTG-DYSKFIYTFADRV 315 Query: 270 PPLFSYFPANTLLVNTGD---LETSAERFQADTLARFENRGVDPMRPLLPPQS-LWLRVD 325 L YFP L+ + L+ ++ + +NR +LP Q+ +++ ++ Sbjct: 316 SSLAEYFPKGDTLIVVDEPVRLKEHSDMTFYEYSESMKNRLESGY--VLPSQTHMFMDME 373 Query: 326 ELFSELKNWPRVQLKT-EHLPTK-AANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDG 383 + ++ L T E+ P + ++ + + + D +RK+ Sbjct: 374 TAVLSMNGHKQLVLTTLEYTPEFFGIDYSMHIEARSISSYNNSFEYLSDDIRKYKRN-KY 432 Query: 384 PVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMI-GAAEHGFVDTVRNLA 442 V+ S R + + L R+ I +++ G ++ G+ GF ++ Sbjct: 433 AVLLVCSSRTRANRIVDDLGRLGIESFYTEDSNKSMAGGLVMVTYGSLHRGFEYPLQGFV 492 Query: 443 LICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAG 502 I E+D+ E+ +R + I EL+IG VVH +G+G+Y G+ ++ Sbjct: 493 CIAENDIFTEKKRKRVKKKEYDGKN---IAGFNELNIGDYVVHENYGIGQYKGIEKIKVE 549 Query: 503 GITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP-LHKLGGDAWSRARQKAAEKV 561 G+ +Y+ ++YA+++ LYV + L + ++AG E P L+K+GG W + + K V Sbjct: 550 GVEKDYIKISYADNSNLYVLATQLDRLQKFAGSDVEKKPKLNKIGGSEWGKTKSKVHSAV 609 Query: 562 RDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621 +VA +L+++YA R EG+ F D Q F + FP+E T DQ AI DM Sbjct: 610 EEVAKDLVELYATRQRIEGYQFGPDTVWQQEFEEMFPYEETTDQLNAIEDTKHDMESRRV 669 Query: 622 MDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIE 681 MDRL+CGDVG+GKTE+A+RAAF AV KQVA LVPTT+LA QH+ F R ++PV + Sbjct: 670 MDRLICGDVGYGKTEIAIRAAFKAVQEGKQVAYLVPTTVLASQHFTTFEQRMKDFPVTVA 729 Query: 682 MISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKER 741 +S FR++ + + + E+ +G +DI+IGTH+LL DV FKDLGLLI+DEE RFGV HKE+ Sbjct: 730 QLSSFRTSAQNKETIEELKKGMVDIVIGTHRLLSKDVVFKDLGLLIIDEEQRFGVTHKEK 789 Query: 742 IKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREA 801 IK ++ NVD+LTL+ATPIPRTL+M+++G+RD+S++ PP R+ ++TFV E++ ++REA Sbjct: 790 IKKLKNNVDVLTLSATPIPRTLHMSLAGIRDMSVLEEPPVDRVPIQTFVTEHNDEMIREA 849 Query: 802 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR 861 I RE+ R GQVYY+YN V +I +AA + ELVP+A +A HGQM +RELE++M DF + Sbjct: 850 ITRELARNGQVYYVYNRVRSIDEAAAHIQELVPDANVAYAHGQMAKRELEKIMCDFVNGE 909 Query: 862 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA 921 +VLV TTIIETG+DI NT+IIE AD FGL+QL+QLRGRVGRS AYA+LL K Sbjct: 910 IDVLVSTTIIETGMDISNCNTMIIEDADRFGLSQLYQLRGRVGRSSRTAYAFLLYRRDKV 969 Query: 922 MTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLEN 981 +T A+KRL I D G+GF +A DLEIRGAG +LG Q G M +G+ LY ++L Sbjct: 970 LTEVAEKRLSVIREFADFGSGFKIAMKDLEIRGAGNVLGNSQHGHMAAVGYDLYCKMLNQ 1029 Query: 982 AVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEE 1041 AV+ LK +++ +T +++ + + +P +I +L YKRIA+ + +EL + Sbjct: 1030 AVNNLKG-----IKNEYEFETTIDVDVDAYIPATYIKSEYQKLDIYKRIAALENMDELSD 1084 Query: 1042 IKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 ++ EL DR+G +P A LL IA ++ +A KLG+ +++G Sbjct: 1085 MRDELSDRYGSVPSCADNLLMIALIKSKAHKLGMIEIKG 1123 >UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=Lactobacillus RepID=C7TMD0_LACRL Length = 1175 Score = 632 bits (1629), Expect = e-179, Method: Compositional matrix adjust. Identities = 317/699 (45%), Positives = 462/699 (66%), Gaps = 8/699 (1%) Query: 385 VVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALI 444 VVF V + R + L L +I+ + ++ L G+ ++GF L ++ Sbjct: 406 VVFLVSDKNRLDKLSATLHDFEIS-NVVTEPNQLLSGKVQLTDGSLKNGFELPDLKLVVV 464 Query: 445 CESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGI 504 E +L R RR +T+ +R+ EL G VVH+ HG+G+Y GM TLE G+ Sbjct: 465 TEHELFNARQRRRA--RHQTLANTERLRSYNELKPGDYVVHVNHGIGQYTGMETLEVDGV 522 Query: 505 TGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDV 564 +Y+ + Y N+ KL++PV L+L+ +Y + ++KLGG W + ++K A ++ D+ Sbjct: 523 HRDYITIVYRNNDKLFIPVDQLNLVQKYVSADGKTPNVNKLGGTEWQKTKRKVAARIEDI 582 Query: 565 AAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDR 624 A EL+D+YA+R A++G+AF D + Q F D FP+ TPDQ ++ + DM +P MDR Sbjct: 583 ADELIDLYAKREAEKGYAFGPDDDLQQKFEDEFPYPETPDQLRSAKEIKRDMEKPKPMDR 642 Query: 625 LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMIS 684 L+ GDVGFGKTEVA+RAAF AVD KQVA+LVPTT+LAQQH+D +DRFA++PV+I ++S Sbjct: 643 LLVGDVGFGKTEVALRAAFKAVDYGKQVAILVPTTILAQQHFDTMKDRFADFPVKIGLLS 702 Query: 685 RFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKA 744 RF++ + + + G IDI++GTH+LL DV F+DLGLL++DEE RFGV+HKERIK Sbjct: 703 RFQTPHQNKMTIKGLKNGTIDIVVGTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQ 762 Query: 745 MRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILR 804 +++NVD+LTLTATPIPRTLNM+M G+RDLS+I TPP R ++TFV E + V+REAI R Sbjct: 763 LKSNVDVLTLTATPIPRTLNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIER 822 Query: 805 EILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNV 864 E+ RGGQV+YL+N VE++++ +L ELVP+A I HGQM E +LE V+ DF H ++V Sbjct: 823 EMERGGQVFYLHNRVEDMERTVSQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDV 882 Query: 865 LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTT 924 LV TTIIETG+D+P ANT+IIE ADH+GL+QL+QLRGR+GRS AYA+ + K + Sbjct: 883 LVTTTIIETGVDMPNANTLIIENADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNE 942 Query: 925 DAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVD 984 A+KRL+AI +LG+GF +A DL IRGAG LLG++Q G ++++G+ LY ++L+ AV+ Sbjct: 943 VAEKRLQAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVN 1002 Query: 985 ALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKV 1044 + L+ + E++L + + LP D++ D ++ YKRI A ++ EI Sbjct: 1003 -----KRRGLKTVQKTDAEIDLGLEAYLPTDYVADSRQKIELYKRIREADSDEAETEISE 1057 Query: 1045 ELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 +LIDRFG P P LL IA L++ A + ++ N++ Sbjct: 1058 DLIDRFGDYPQPVTNLLAIAHLKRFADLAWVDHVQKNDQ 1096 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/130 (29%), Positives = 73/130 (56%), Gaps = 2/130 (1%) Query: 89 SSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH-SFLHGHALVMKKGQRLSRDALRTQLDS 147 + R++ L + + Q G+++ + +R+ P + LV+ L + QL + Sbjct: 98 NDRINALTFIQSGQPGIIVTSLAG-YKRILPAPAAWAASELVVDMDSELDPQTVAKQLVA 156 Query: 148 AGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVE 207 GYR V G++A RG ++D++P+ + P R++ FD EIDS+R FD+ +QR+L++++ Sbjct: 157 MGYRRDSLVSAPGQFAIRGGIIDIYPLNQDDPIRIELFDTEIDSIRSFDIATQRSLKKLD 216 Query: 208 AINLLPAHEF 217 I + PA + Sbjct: 217 QIVIAPATDM 226 >UniRef50_C6X2W6 Transcription-repair coupling factor n=17 Tax=Bacteroidetes RepID=C6X2W6_FLAB3 Length = 1138 Score = 630 bits (1626), Expect = e-179, Method: Compositional matrix adjust. Identities = 369/1081 (34%), Positives = 585/1081 (54%), Gaps = 83/1081 (7%) Query: 24 GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNLADWETLPYDSFS 82 G+A + AE+ V+ + D ++AL E+ + V+ PY Sbjct: 41 GSAPSIFAAELFVTRKKTVLFLIEDKEDALYATAEMEDLLGKENVLYFPATHLAPYQIEK 100 Query: 83 PHQDIISSRLSTLYQLPTMQR-GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDAL 141 + R L +L ++ V+I P ++L ++V + +K G+ L D Sbjct: 101 TQNANLVLRTDVLNKLNASKKPKVIIAPFSSLSEKVLRKEDFKAISHRIKVGESLDFDFT 160 Query: 142 RTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR 201 L ++ D V E GE++ RG ++D+F +E PYR+ FF +EI+S++ F++++Q Sbjct: 161 GELLQQFNFQLTDFVSEPGEFSVRGGIVDVFSYSNEEPYRISFFGNEIESIKTFNIETQL 220 Query: 202 TLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQ 261 T +V L+ + + + L D+F V + +++S A EY++ Sbjct: 221 TNGKVNEFQLVSNMNYAVSGSKVSLLGLLPNDSFVVSVNAILATRKISDFFTKAD-EYYE 279 Query: 262 PLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLW 321 L N+ + PP L+ Sbjct: 280 AL-----------------------------------------NKDIKHQ----PPAELF 294 Query: 322 LRVDELFSELKNWPRVQLKTEHLPTKAANANL---------GFQKLPDLAVQAQQKAPLD 372 + +E ++ + + + L T A+ L GF K +L ++ D Sbjct: 295 VSEEEFLKDIAAFKHIDFTLDTLKTSQADTLLIQLNQTQQPGFHKNFELLLE-------D 347 Query: 373 ALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEA----SDRGRYLMIG 428 + K FD + FS E + +E L + I PQ ++ E + + Sbjct: 348 LVEKRNANFDIWISFSTEKQ--KERLEAIFKEIS-TPQEMISDSEDLPVFQQKAFFKSFK 404 Query: 429 AAEH-GFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLE 487 + H GFVD +++ + + +R R + + + +++L ++ +G + H++ Sbjct: 405 SELHEGFVDADHKISVYTDHQIF-DRYQRFKAKNTFAKSEQLTLKDLMQMKVGDYITHID 463 Query: 488 HGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGG 547 HG+G++ G+ + G E LTY N LYV + SLH IS+Y G L KLG Sbjct: 464 HGIGKFMGLVKVNNNGKVQECFKLTYKNGDLLYVSIHSLHKISKYNGPDGREIVLSKLGS 523 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607 AW +QK KV+ +A +L+ +YA+R +GFAF D SF +E TPDQ + Sbjct: 524 PAWKTLKQKTKAKVKQIAFDLIRLYAKRKTAKGFAFTPDSYLQNELEASFIYEDTPDQEK 583 Query: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667 A V +DM + MDRL+CGDVGFGKTE+A+RAAF A + KQVA+LVPTT+LA QHY Sbjct: 584 ATLDVKTDMEKETVMDRLICGDVGFGKTEIAVRAAFKAATDGKQVAILVPTTILAFQHYR 643 Query: 668 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727 +F++R ++PV I ++RFR+AK++++ L +AEGKIDI+IGTH+L+ S VKFKDLGLLI Sbjct: 644 SFKERLKDFPVNISYMNRFRTAKQKSETLKGLAEGKIDIVIGTHQLVSSTVKFKDLGLLI 703 Query: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787 +DEEH+FGV K+++K ++ N+D LTLTATPIPRTL ++ RDLS+I TPP R V+ Sbjct: 704 IDEEHKFGVAVKDKLKTLKNNIDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQPVE 763 Query: 788 TFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 847 T + + ++R+AI EI R GQVY++ N +EN++ A + LVP+A++ GHGQM Sbjct: 764 TSIVGFSEEIIRDAISYEIQRDGQVYFINNRIENLKDIAGLIQRLVPDAKVITGHGQMEG 823 Query: 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 ++LER + DF +++VLV TTI+E+G+D+P ANT+ I A FG+A LHQ+RGRVGRS+ Sbjct: 824 KQLERNVLDFMEGKYDVLVSTTIVESGVDVPNANTMFINDAQRFGMADLHQMRGRVGRSN 883 Query: 908 HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSM 967 +A+ +L+TP MT+DA+KRLEAI DLG+GF +A DLEIRGAG+LLG EQSG + Sbjct: 884 RKAFCYLITPPFDMMTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLLGGEQSGFI 943 Query: 968 ETIGFSLYMELLENAVDALKAGRE-----PSLED-----LTSQQTEVELRMPSLLPDDFI 1017 +GF Y ++++ A++ L+ E + ED ++++ ++ + +LPD ++ Sbjct: 944 NEMGFDTYQKIMQEALEELQNDEEFGELFENEEDRKKLFKSTKEVNIDTDLELMLPDVYV 1003 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 + RLS Y+++A + +L + + EL DRFG LP A+ LL L+ A ++G K Sbjct: 1004 QSIEERLSLYQKLAEIQNRGDLRKFENELNDRFGALPPEAKNLLKSVELKWIAAEIGFDK 1063 Query: 1078 L 1078 + Sbjct: 1064 I 1064 >UniRef50_A6GBX4 Transcription-repair coupling factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GBX4_9DELT Length = 1243 Score = 629 bits (1623), Expect = e-178, Method: Compositional matrix adjust. Identities = 428/1177 (36%), Positives = 637/1177 (54%), Gaps = 97/1177 (8%) Query: 16 QRLLGELTGAACATLVAEIAERHA-GPVVLIAPDMQNALRLHDEISQF------------ 62 +R+LG G L +A+ P+V +APD A + +++ F Sbjct: 22 KRVLGAEGGYRGLLLARAMADPETDAPLVYVAPDDTTAQTVAADVAFFAGSGEGASATDA 81 Query: 63 ----TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVC 118 ++Q V+ + + + PY SP + +R++ L +L + ++I+ + +LM++ Sbjct: 82 GPVGSNQRVLTVPEIDVSPYGDVSPDPRSVGARMAALERLRAGEPELIILSLRSLMRKTI 141 Query: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL 178 P + L R+ L +AGYR VD V + G +A RG ++D++ Sbjct: 142 PAEAFAQLCRTWAREGELGREEAAAFLSAAGYRRVDVVGDPGCFAIRGGIMDVWVPLERF 201 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFP-----TDKAAIELFRSQWRD 233 P RL+++ DEI+ +RVFD DSQR+L EV +I + P E T A+ L + D Sbjct: 202 PARLEWWGDEIERIRVFDPDSQRSLREVRSIRVHPVRETVATGSRTTANALRLAVLELGD 261 Query: 234 TFEVKRDPEHIYQQVSKGTLPAGIEYW-----QPLFFSEPLPPLFSYFPANT--LLVNTG 286 EV P +QV L AG++++ P+F + L + Y PAN L Sbjct: 262 RIEV---PSSATRQVI-ANLGAGVDFFGIDALTPVFH-DGLASVADYLPANARWYLDEPE 316 Query: 287 DLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTE-HLP 345 L ER AD L R V+ + P+ + ++L +L+ V + + + P Sbjct: 317 ALVGLGERM-ADELDFEYRRAVEAKHLVAAPEDFFCTREQLREQLRGAAVVGARLDLYDP 375 Query: 346 TKAANANLGFQKLPDLAVQAQQKAPLDA---------LRKFLE-----------TFDGP- 384 + G ++ DL A +A L+A LR ++ T G Sbjct: 376 EQTKGDRRGVIRV-DLGRNAPLRAKLEAARGQKGGELLRPVVDHIRELGVHADATLGGAL 434 Query: 385 ---------VVFSVESEGRREALGELLARIKIAPQRIMRLDE--ASDRGRYLMIGAAE-- 431 VV + E L +L + P+ + + +S G + +G E Sbjct: 435 DPSERDPWDVVLVAPNTTHAERLTAMLRGYGLRPEGTSKQEREHSSGAGGAIELGGLELQ 494 Query: 432 ------------HGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHI 479 GF L ++ ES++ G VARR RR + +L++L I Sbjct: 495 APRLRVIAGTLSEGFASEGDRLLVVSESEIFGP-VARREGRRRRRRKAG--VASLSQLSI 551 Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G VVH+ HGVGRY G+T L A G+ G+++++ YA KLY+PV + I RY AE Sbjct: 552 GDYVVHVVHGVGRYVGLTKLAAQGVPGDFVIVEYAKKDKLYLPVHRIGEIERYVS-AEAK 610 Query: 540 AP-LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFP 598 AP L ++GG + +K VR +A ELL IYAQR A G AF + Y F +FP Sbjct: 611 APKLDRMGGQTFQAKAKKIRSDVRQLAEELLQIYAQREAMTGHAFAPGGDMYAEFEQTFP 670 Query: 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 658 FE TPDQA AI++V D+ MDRLVCGDVGFGKTEVA+RAAF KQVAVL PT Sbjct: 671 FEETPDQADAIDSVQDDLSSQRPMDRLVCGDVGFGKTEVALRAAFRVAAAGKQVAVLAPT 730 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 T+L QQHY F +R + +P+ + +++RF S ++ + LA + +G +D+++GTH+LL DV Sbjct: 731 TVLVQQHYLTFSERMSAFPLEVGVLNRFSSPADRKRTLAGIKDGTVDVVVGTHRLLSRDV 790 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 +FK+LGL+I+DEE RFGV+ K+R K ++ +VD+LTLTATPIPRTL+M++ GMR++S+I T Sbjct: 791 RFKELGLVIIDEEQRFGVKQKDRFKKLKTSVDMLTLTATPIPRTLHMSLLGMREISMITT 850 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 P RLAV+T++ + +V+ E I RE+ RGGQ++Y+ V I++ A R+ ELVPEAR+ Sbjct: 851 APVDRLAVRTYLTRHSDVVLEEGIRRELARGGQIFYVVPRVMGIEEHAVRIRELVPEARV 910 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 + HGQM LE+ M DF +VLV TTIIE+G+DIP ANT+ I RAD FGLAQL+Q Sbjct: 911 IVAHGQMPPEMLEQTMVDFVRHEADVLVSTTIIESGLDIPRANTMFIARADQFGLAQLYQ 970 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 LRGR+GRS +AY +L+ + ++ DA++RLEAI +LGAGF +A+ DLEIRGAG+L Sbjct: 971 LRGRIGRSKLRAYCYLMVASLERLSEDARRRLEAIQRHSELGAGFNVASQDLEIRGAGDL 1030 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQT--EVELRMPSLLPDDF 1016 LG QSGS++ IGF Y +L AV L+ D SQ+T EV +P+ LPD + Sbjct: 1031 LGRRQSGSIQAIGFEAYARILGEAVAELRG-------DPISQETDPEVAFDVPAFLPDTY 1083 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076 + DV RL FY+R+++++ +E+ E+ EL DR+G LP AR + + ++L Sbjct: 1084 VEDVGARLDFYRRLSTSRDADEVREVLEELHDRYGELPVEARHFGLMMACKSYGRRLRAT 1143 Query: 1077 KLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRL 1113 LE I + + ++P +GL RL Sbjct: 1144 ALELRAMRFSIRLSPETPLSPEVALGLSDATDGRVRL 1180 >UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rothia mucilaginosa RepID=D2NP15_9MICC Length = 1330 Score = 628 bits (1619), Expect = e-178, Method: Compositional matrix adjust. Identities = 428/1165 (36%), Positives = 626/1165 (53%), Gaps = 136/1165 (11%) Query: 10 PVKAGEQRLLGELTGAACATLVAEIAE-----RHAGPVVLIAPDMQNALRLHDEISQFTD 64 P + + L+G + G A L+A+I+ ++IAP + A L + + Sbjct: 122 PTERSARTLIGAVAGTHAA-LIADISTAVRDTTAEALSLIIAPTDRQAEDLAAALRSYLP 180 Query: 65 QMVMNL-ADWETLPYDSFSPHQDIISSRLSTLYQL---PTMQRGVLIVPVNTLMQRVC-- 118 + L WETLP++ SP D + RL L + + V+I PV ++Q + Sbjct: 181 AADIALFPAWETLPHERLSPRSDTVGRRLQVLRAMTGDADKRPQVVIAPVRAVIQPIVTG 240 Query: 119 -----PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFP 173 P + G K D +R L+ A Y VD V + GEYA RG ++D+FP Sbjct: 241 IEKLEPVHLVRGEEYPFK-------DVVRG-LNDAAYSRVDLVAKRGEYAVRGGIIDVFP 292 Query: 174 MGSELPYRLDFFDDEIDSLRVFDVDSQRTL---EEVEAINLLPAHEFPTDKAAIELFRSQ 230 + P RL+FF DE+D +R F V QRTL EE+ + LLP E E+ Sbjct: 293 PTATTPVRLEFFGDELDEMRHFSVADQRTLSGGEELTELTLLPCRELLITP---EVMSRA 349 Query: 231 WRDTFEVKRD---PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNT-- 285 R +K D + ++++ G G+E PL E + L PA ++++N Sbjct: 350 AR----LKADYPAAAAMLEKIAGGIYVEGMESLTPLLI-ESMNTLTELLPAGSMIINVEP 404 Query: 286 -------GDLETSAERFQA---DTLARFENRGVDPMRPLLPPQSLWLRVDE-----LFSE 330 DL + E F A DT A + + L S + +D+ L ++ Sbjct: 405 ERVRARAEDLVATNEEFLAAAWDTSAEADAVAPIDLGQLRMSDSGFRTIDQTTAQALEAK 464 Query: 331 LKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETF----DGPVV 386 L W +L T +A+L L D A Q + DA+ ++T+ Sbjct: 465 LSWWEITELVT--------DADL----LEDAAGALQNQNIADAIEDGIDTYTVNATPATA 512 Query: 387 FSVESEGRREALGEL---------LARIKIAPQRIMRLDEASDRGRYL-----------M 426 F+ E +G+L L + + R++ L + + + Sbjct: 513 FNGSVERMLSQVGDLIRQQWTVLALTNGRGSTDRLIDLFHSGEGAPAVPAARRTSLEADP 572 Query: 427 IGAAEHGFVDTVR------------NLALICESDLLGER-------VARRRQDSRRTINP 467 G EHG V+ LA+ E++LLG R A ++ +RR N Sbjct: 573 AGKLEHGIVEVCEAPASAGFLVEEAKLAVFTEAELLGRRGTYAPRGAAGQKFKTRRRRN- 631 Query: 468 DTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGIT--------GEYLMLTYANDA-- 517 + LA L+ G VVH HG+GR+ MT+ G + EYL++ YA Sbjct: 632 --AVDPLA-LNPGDYVVHERHGIGRFVEMTSRPVAGASPVNGVQPMKEYLVIEYAPAKRG 688 Query: 518 ----KLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYA 573 +L+VP L LIS Y GG EN L K+GG W++ + +A + V+++AA+L+ +Y+ Sbjct: 689 GAPDRLFVPSDQLDLISNYVGG--ENPSLSKMGGSDWAKTKSRARKAVKEIAADLVKLYS 746 Query: 574 QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFG 633 R A G AF D + +SFP+ TPDQ AI+ V DM + + MDRL+ GDVGFG Sbjct: 747 ARQASRGHAFAADTPWQRELEESFPYNETPDQLTAIHEVKEDMEKEIPMDRLISGDVGFG 806 Query: 634 KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT 693 KTEVA+RAAF AV + KQVAVLVPTTLLAQQHY+ F +RF+ +PV+I ++SRF+ AKE Sbjct: 807 KTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHYETFSERFSGFPVKIRVLSRFQKAKETR 866 Query: 694 QILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILT 753 QI E+A G +D++IGTH++L V FKDLGL+I+DEE RFGV HKE++K MR NVD+L Sbjct: 867 QITEEIASGAVDVVIGTHRILSDSVVFKDLGLVIIDEEQRFGVEHKEKLKQMRTNVDVLA 926 Query: 754 LTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVY 813 ++ATPIPRTL M+++G+R+ S +AT P R V TFV + AI REI+R GQV+ Sbjct: 927 MSATPIPRTLEMSLTGIRETSTLATAPEERHPVLTFVGPRTDSQITAAIRREIMREGQVF 986 Query: 814 YLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 873 +++N V +I A + +LVPEARIA HG+M E LE+++ DF +RF+VLVCTTI+ET Sbjct: 987 FVHNRVADIDDVAAEIGKLVPEARIATAHGRMSESRLEQIIVDFWERRFDVLVCTTIVET 1046 Query: 874 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAI 933 G+DI ANT+I++ A ++GL+QLHQLRGRVGR +AYA+ L P K + A +RL+A+ Sbjct: 1047 GLDISNANTLIVDHAQNYGLSQLHQLRGRVGRGRERAYAYFLYPVDKTLGEIAHERLKAV 1106 Query: 934 ASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPS 993 A+ +LGAG LA DLEIRGAG LLG EQSG + +GF LY+ L+ AV + +E Sbjct: 1107 ATHNELGAGLQLAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYLRLVGEAVANYRGEKEER 1166 Query: 994 LEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLL 1053 +T+++L + + +P +I RL Y++IA+A TE ++ E + EL+DR+G L Sbjct: 1167 -----EVETKIDLPVNAHIPHTYIDSERLRLQAYRQIAAADTEEKIAEAREELVDRYGEL 1221 Query: 1054 PDPARTLLDIARLRQQAQKLGIRKL 1078 PD LL +A +R A+ GI ++ Sbjct: 1222 PDAVENLLAVATVRMHARAAGIHEM 1246 >UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX01_9BACT Length = 1082 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 400/1105 (36%), Positives = 590/1105 (53%), Gaps = 143/1105 (12%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ-FTDQMVMN 69 V+ GE + AA L A + ++ V ++ P+++ +H+E+ Q F D + Sbjct: 24 VRKGEAVSFEHVVAAAQPFLAALLVQQAKARVWIVCPNVRTQETMHNELLQWFPDALF-- 81 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ-RGVLIVPVNTLMQRVCPHSFLHGHAL 128 + + P + P + I+ RL + +L +++ R V+++ +L V + L + Sbjct: 82 FPEIDRAPVEGALPDPESIAERLGIVQRLTSVKGRQVVVLTRASLDDEVPSPAALKQLEI 141 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 +++ RL R+ L QL AGY HV QV G++A RG +LD+F LP R++ FDDE Sbjct: 142 RLRRSTRLDREKLLKQLAEAGYEHVPQVSARGQFAVRGGILDVFSFHHSLPVRIELFDDE 201 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQV 248 IDSLR FD+D+Q +++ ++ + LL E ++A+ +L + + QV Sbjct: 202 IDSLREFDLDTQISVQHLDTVTLLLG-EAAAERASCKLQELVTERDITIDAEASWFAAQV 260 Query: 249 -----SKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARF 303 S+G G E + FF L F A +V+ E ERF Sbjct: 261 RIMEHSEGAATEGAEDYSTAFFDHGL----GEFEAGDFVVD----EIKRERF-------- 304 Query: 304 ENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLG-FQKLPDLA 362 FS+L+ W +TE N G ++L DL Sbjct: 305 ------------------------FSQLREW-----RTEGWRVHVFCNNEGEIERLHDL- 334 Query: 363 VQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG 422 + VE++ + +G L ++ L +A G Sbjct: 335 -----------------------LPPVEADALQFTVGTLNCGFTFPSAKVAVLSDAELFG 371 Query: 423 RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQP 482 RY RN + A R Q +N D Sbjct: 372 RY--------------RNTRARRMALRRAREQASRSQIDFSELNEDDY------------ 405 Query: 483 VVHLEHGVGRYAGMTTL-EAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541 VVHLEHG+GRY GM ++ A G T E L+L +A+DA+LYVP+ +L+SRY G ++N Sbjct: 406 VVHLEHGIGRYEGMKSIPRADGKTEEVLVLAFADDARLYVPLEQSYLVSRYVGVGKKNPA 465 Query: 542 LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFET 601 L LG W++A++ A + V D A++LL ++A+R G+AF D + + F SF F+ Sbjct: 466 LSVLGDGKWAKAKKNAEKAVFDYASKLLAVHAERETAVGYAFPPDNKWQREFESSFLFKE 525 Query: 602 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLL 661 T DQ AI A +DM MDRL+CGDVGFGKTEVA+RAAF +V KQVA+LVPTT+L Sbjct: 526 TVDQLTAIAASKADMESERPMDRLICGDVGFGKTEVAIRAAFKSVMGGKQVAILVPTTVL 585 Query: 662 AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 721 A+QHY NFR+R +++PV +E++SRFR+A EQ + + +A+G++DI++GTH+L+ D+ FK Sbjct: 586 AEQHYRNFRERMSDYPVTVELLSRFRTAAEQRKTVQGLADGRVDIVVGTHRLISKDILFK 645 Query: 722 DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781 DLGL+++DEE RFGV HKER K M VD+LTL+ATPIPRTL +++ G +D+S I TPP Sbjct: 646 DLGLVVIDEEQRFGVLHKERFKEMFKLVDMLTLSATPIPRTLYLSLMGAKDMSTIETPPL 705 Query: 782 RRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 841 R+ +T + YD ++R+AI RE+ R GQVY+L+N V +I+ +++ +L P+AR IG Sbjct: 706 NRIPTETLICPYDERIIRDAINRELSRQGQVYFLHNRVHSIEMMRDKIKKLCPKARCVIG 765 Query: 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901 HGQM E ELE VM++F +VL+ TTIIE+G+DIP ANTIII+RAD FGLA L+QLRG Sbjct: 766 HGQMDEHELEDVMHEFVSGAADVLISTTIIESGLDIPNANTIIIDRADRFGLADLYQLRG 825 Query: 902 RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961 RVGR+ H+AYA+LL P +A++R+ AI LGAGF +A DLEIRGAG +LG Sbjct: 826 RVGRAQHKAYAYLLLPREMMTQGEARRRINAIKQYSSLGAGFKIAMRDLEIRGAGNILGT 885 Query: 962 EQSGSMETIGFSLYMELLENAVDALKA------------------------GREPSLEDL 997 QSG + IGF LY LL+ A+ LK R +ED Sbjct: 886 AQSGHIVNIGFDLYCALLKQAIAKLKGEKVRARLEVVLRTDFVATREAEFLNRSSKIEDG 945 Query: 998 TSQQ------TEVELRM------PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVE 1045 S+ ELR P+ LP +I + R+ Y+++A T+ +L+ I+ Sbjct: 946 RSEMAGRGSAANSELRTPISDFAPAFLPSVYIGESQPRIQAYRKLAEVTTQEQLDTIRKT 1005 Query: 1046 LIDRFGLLPDPARTLLDIARLRQQA 1070 DR+G+LP+ A LL + ++ A Sbjct: 1006 WRDRYGVLPEAAENLLVMTEIKLAA 1030 >UniRef50_Q72AT7 Transcription-repair coupling factor n=5 Tax=Desulfovibrionaceae RepID=Q72AT7_DESVH Length = 1160 Score = 624 bits (1610), Expect = e-177, Method: Compositional matrix adjust. Identities = 383/1025 (37%), Positives = 587/1025 (57%), Gaps = 43/1025 (4%) Query: 73 WETLPYDSFSP-HQDIISSRLSTLYQL--PTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 W +P ++D +SR++ L+ L + +GVLI V+ + ++ P H L Sbjct: 83 WVVMPQHPLGARNRDAWASRMAALFALGQKRVPQGVLIT-VDNFLSKLPPADLFASHELT 141 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 + G ++ + + Q G+ V V GE A RG ++D++P G E P RL+FF + + Sbjct: 142 LACGDEMAPELVLEQAVDWGFDRVQMVSRPGEIAVRGDIVDIYPPGYERPLRLEFFGETL 201 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVS 249 + +R+FD +QR+L +++ + LLP ++W+ F E Y + Sbjct: 202 EEIRLFDASNQRSLGKLDEMVLLPVSPVVLSAELRSKATARWKRLFSKGMLTEEQYAGLL 261 Query: 250 KGT------LPAGIEYWQPLFFSEPLPPLFSY-FPANTLLVNTGDLETSAERFQADTLAR 302 +G L G Y P E LP ++ P LV+ +E + + ++A + Sbjct: 262 RGIERHGEGLMPGAYYEAPTVVEEWLPRDAAWILPGRKELVDA--VEAAQQNWEALFDKQ 319 Query: 303 FENRGVDPMRPLL-----PPQSLWLRVDEL-FSELKNWPRVQLKTEHLPTKAANANLGFQ 356 E G R L+ P + L+ D F L V+ +P + + + Sbjct: 320 AEEGGARQPRGLVLRDAAPVRQLYEEKDSAGFEPLVM--GVERTGVDMPERKLHGFVDLF 377 Query: 357 KLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD 416 PD A +A + L +F+ T ++ GRR+ L +L + I P +R D Sbjct: 378 PAPD-ARDRPWQALVAGLHRFVATHARVLLCFGNERGRRKFL-KLAEQDGITP--TLRYD 433 Query: 417 EASDRGRYLM-IGAAEHGFVDTVRNLALICESDLL---GERVARRRQDSRRTINPDTLIR 472 +GR LM + A V+ + L+ D+L +R AR + R ++ Sbjct: 434 P---KGRGLMAVVAPYRAGVELAWDGTLVIGEDVLQPKTDRSARVASGAFRGLDKHE--- 487 Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 L G +VH ++GV R+ G+ ++ GG+ ++L+L YA D +LY+PV L L+ R+ Sbjct: 488 ---GLQPGDLLVHRDYGVARFVGLERMDLGGVGNDFLLLEYAGDDRLYLPVDRLSLVQRF 544 Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 G + L +LGG AW ++ KA + + +AA+L+++YA R +G+ + E Y+ Sbjct: 545 KGADDTKPSLDRLGGGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPIGELYRE 604 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F SF FE TPDQA+AI VL DM +P+ MDRLVCGDVGFGKTEVA+RAAF A +QV Sbjct: 605 FEASFGFEETPDQARAIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALRAAFRAASEGRQV 664 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 A+L PTT+LA+QHY FR R A +PV + M+SRF S ++QT++LA A+G +DILIGTH+ Sbjct: 665 ALLCPTTVLAEQHYQTFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAAKGHVDILIGTHR 724 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 LL DV+ +LGLL++DEE RFGVRHKE++K R NVD LTLTATPIPRTL ++MSG+R+ Sbjct: 725 LLSDDVRLPNLGLLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLSMSGIRE 784 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 832 LS+I T P R V T + E D ++ + REI R GQV++++N V+ +++ E + +L Sbjct: 785 LSVIETAPPERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERTTEYVRKL 844 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 VP+AR+ + HGQM ER LE M+ F H +VLVCT I+E+G+D P ANT+I+++A FG Sbjct: 845 VPDARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFG 904 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 L QL+QLRGRVGRS QAYA + P ++ A++R+ I ++ LGAGF +A DL I Sbjct: 905 LGQLYQLRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVAMEDLRI 964 Query: 953 RGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLL 1012 RGAG +LGE QSG M +G L++E+LE AV LK +P E S +TE+ + +P+ + Sbjct: 965 RGAGNILGEAQSGHMTRVGLELFLEMLEEAVTRLKG--DPPRE---SVETELNIGIPAHI 1019 Query: 1013 PDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 P+ +I D RL FYK ++SA ++I++E+ DR+G+ P T L + L++Q ++ Sbjct: 1020 PEGYIEDARDRLRFYKALSSATDAAAQQDIEMEMRDRYGVFPPELETFLALLVLKRQLRR 1079 Query: 1073 LGIRK 1077 + +++ Sbjct: 1080 MQVQR 1084 >UniRef50_C0BHL1 Transcription-repair coupling factor n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BHL1_9BACT Length = 1064 Score = 621 bits (1602), Expect = e-176, Method: Compositional matrix adjust. Identities = 370/1031 (35%), Positives = 567/1031 (54%), Gaps = 92/1031 (8%) Query: 105 VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYAT 164 ++I + +++ + L + K LS + + L G++ VD V GE+A Sbjct: 64 IIISYPQAVFEKIISQNTLKRITFKIIKDTILSLNFINESLFEMGFQRVDFVTSPGEFAV 123 Query: 165 RGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAI 224 RG ++D+F + PYR++FFDD ++ L FDV +QR++ ++I LLP Sbjct: 124 RGGIIDVFSFAYQHPYRIEFFDDTVERLCSFDVQTQRSITAFDSIELLP----------- 172 Query: 225 ELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN 284 DT D F++ + +FPAN+ + Sbjct: 173 --------DT--SNND------------------------FTDKRKSILEFFPANSSFIF 198 Query: 285 TGDLETSA---ERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL-K 340 + +T+A + F+ T A + ++ V PP++L++ DE + N L + Sbjct: 199 SNFDKTTARLEQLFEKATDA-YNSKEVTTQ---YPPETLFMNRDEWIKDSHNKSVFVLER 254 Query: 341 TEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGE 400 TE LP + + +Q +P A K FD ++ + +R Sbjct: 255 TEDLPITSQ-------------IHVKQ-SPQPAFNK---QFD-ILISHLNENNKRGYKNT 296 Query: 401 LLARIKIAPQRIMRLDEASDRGRYLM--IGAAEHGFVDTVRNLALICESD-LLGERVARR 457 L + +R + + ++ + + + GF D A C SD + ER + Sbjct: 297 LFCSNEQQTKRFHDIFQELEKTVHYKTEVLSIYEGFEDLEAQWA--CFSDHQIFERYHKY 354 Query: 458 RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDA 517 + S ++ L ++ +G V H++HG+G + G+ +E G E + L Y Sbjct: 355 QLKSDAARKQALNLKELTQMEVGDYVTHIDHGIGTFGGLQRIEVEGKWQEAIKLIYGERD 414 Query: 518 KLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAA 577 LY+ + SLH IS+Y G ++KLG W +QK K++++A L+++YA+R Sbjct: 415 ILYLSIHSLHKISKYNGKDGAVPKIYKLGSKTWKALKQKTKAKIKEIAFNLIELYAKRRQ 474 Query: 578 KEGFAFKHDRE-QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTE 636 K GFAF D Q++L SF +E TPDQ + A+ +DM MDRLVCGDVGFGKTE Sbjct: 475 KIGFAFDPDSYLQWELEA-SFMYEDTPDQEKTTQAIKADMESQQPMDRLVCGDVGFGKTE 533 Query: 637 VAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQIL 696 VA+RAAF A DN KQV VLVPTT+LA QH+ F R PVR++ ++RFRS K++ QIL Sbjct: 534 VAIRAAFKAADNSKQVVVLVPTTILAFQHFKTFSARLKELPVRVDYLNRFRSTKDKNQIL 593 Query: 697 AEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTA 756 +++EGKIDILIGTH+L+ +V FKDLGLLIVDEE +FGV KE+I++++ N+D+LTLTA Sbjct: 594 QDLSEGKIDILIGTHQLVNKNVVFKDLGLLIVDEEQKFGVAVKEKIRSLKENIDVLTLTA 653 Query: 757 TPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLY 816 TPIPRTL ++ RDLS+IATPP R +++ V + ++R+ I+ E+ RGGQV++++ Sbjct: 654 TPIPRTLQFSLMAARDLSVIATPPPNRFPIESDVVRFSETLIRDGIMYELQRGGQVFFIH 713 Query: 817 NDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876 N VENI + + + LVP+ARIAIGHGQM +LE+ + F F++L+ TTIIE G+D Sbjct: 714 NRVENIAEISGLVQRLVPDARIAIGHGQMEGTKLEKTLLSFMQGDFDILIATTIIENGLD 773 Query: 877 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 +P ANTI I A++FGL+ LHQ+RGRVGRS+ +A+ + +TP AM++DAQKR++ I Sbjct: 774 VPNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPHSAMSSDAQKRIKTIEQF 833 Query: 937 EDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSL-- 994 +G+G +A DLEIRGAG+LLG EQSG + +GF Y ++L+ A+D LK L Sbjct: 834 SAIGSGIQIAMKDLEIRGAGDLLGGEQSGFINEMGFETYQKILQEAIDELKENEFKELYQ 893 Query: 995 ----EDLTSQQTEVEL--RMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELID 1048 + L S EV++ + +PDD++ V RLS Y+ ++ KT EL + + ++ D Sbjct: 894 QEANDTLKSYVKEVQIDTDLELFIPDDYVNIVKERLSLYQELSQVKTSIELVDFENKMKD 953 Query: 1049 RFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH------VNPAWLIG 1102 RFG LP+ A LL+ +L+ A +LGI +L + F V +L+ Sbjct: 954 RFGPLPEAALDLLESMKLKWVATQLGIERLIIKRGSCICYFISDQQSDFFQTVAFTFLLT 1013 Query: 1103 LLQKQPQHYRL 1113 +QK P +L Sbjct: 1014 QIQKAPDRIKL 1024 >UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRR3_SYNAS Length = 1202 Score = 621 bits (1602), Expect = e-176, Method: Compositional matrix adjust. Identities = 312/674 (46%), Positives = 444/674 (65%), Gaps = 7/674 (1%) Query: 440 NLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTL 499 LA I E +L G+++ RR S R +R+ +L G VVH EHG+G Y G+ L Sbjct: 506 KLAAISEEELFGKKITGRRIRSARE---GYFLRSFGDLKEGDYVVHKEHGIGLYQGLQKL 562 Query: 500 EAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAE 559 GGI ++L++ Y + KLY+P+ L ISRY G + KLGG +W R++ + Sbjct: 563 SVGGIENDFLLINYQSGDKLYLPIDRLDQISRYIGPEGYVPKVDKLGGTSWDTVRERVKK 622 Query: 560 KVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQP 619 +++VA EL+ IYA R E +F Y+ F +FP++ TPDQA+AI + +DM Sbjct: 623 SIQEVAEELVAIYAAREVMERRSFAPPDAVYEEFSAAFPYDETPDQARAIEDIHADMNSA 682 Query: 620 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 MDRL+CGD GFGKTEVAMR+AF + +Q AVLVPTT+LA+QH F R ++P+R Sbjct: 683 KPMDRLICGDAGFGKTEVAMRSAFRTAMDGRQTAVLVPTTILAEQHCQTFSSRMKDYPIR 742 Query: 680 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK 739 IE ++RF+S EQ+ +L + +G++DI+IGTH+LLQ DV FK+LGL+IVDEE RFGV HK Sbjct: 743 IEALNRFKSKAEQSSVLEGLRKGQVDIVIGTHRLLQKDVTFKNLGLVIVDEEQRFGVAHK 802 Query: 740 ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVR 799 E++K +R VD+LTLTATPIPRTL++++ G+RDLSII TPP R +KT+V E++ +R Sbjct: 803 EKLKKLRTLVDVLTLTATPIPRTLHLSLVGIRDLSIINTPPEDRQTIKTYVLEFNEETIR 862 Query: 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 EAI RE+ R GQV++L++ V +I A + +LVPEA I + HGQM+ RE+E VM F Sbjct: 863 EAIRRELARNGQVFFLHDRVRSIYTMARLVEKLVPEADIGVVHGQMKPREIEDVMGRFLR 922 Query: 860 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 + NVLVCTTII +G+DIPTANTI++ RAD FGLAQL+Q+RGRVGRS +AYA+LL P Sbjct: 923 KECNVLVCTTIIGSGLDIPTANTILVNRADRFGLAQLYQIRGRVGRSSEEAYAYLLVPKG 982 Query: 920 KAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELL 979 ++ DAQKRL+ I + G+GF +A+ D+EIRG G LLG QSG + +G+ LY EL+ Sbjct: 983 VLLSRDAQKRLQVIMDFSEPGSGFRIASSDMEIRGGGNLLGTSQSGHVSAVGYELYTELM 1042 Query: 980 ENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENEL 1039 E + +K P E + E+ L +P+ +P++++ DV+ RL YKRI+ A + EL Sbjct: 1043 EQTIREIKGETIPEEEIV----PEINLGLPAFIPEEYMADVHRRLVTYKRISMADSNEEL 1098 Query: 1040 EEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAW 1099 EEI+ EL D FG LP LL++ RLR + + + ++K+ + K + F+ V P Sbjct: 1099 EEIRDELADCFGYLPPEVTNLLEVIRLRNRLKAIRVKKMGYDTKQMFLFFSADTPVEPER 1158 Query: 1100 LIGLLQKQPQHYRL 1113 ++ L +K+ + RL Sbjct: 1159 ILSLARKKLKGLRL 1172 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 97/361 (26%), Positives = 171/361 (47%), Gaps = 36/361 (9%) Query: 11 VKAGEQRL-LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVM 68 ++ G +RL + L G+A A L+A ++E+ P+V+++P + A ++S F V+ Sbjct: 23 IEGGVERLSVNRLHGSANAFLIAALSEQLGRPLVVLSPTEKEARETFQDLSLFLGSGKVL 82 Query: 69 NLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHAL 128 W+ D F+ +D+ R+ L +L T + V++ + LMQ+V P S L + Sbjct: 83 LYPPWDIQTTDMFALQRDVELVRMEVLARLLTDEPAVIVASLKALMQKVVPRSILDAYLE 142 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 ++ G + RD L +L + GY+ + V + GE++ RG +LD+FP + P RL+F D+ Sbjct: 143 ILAPGSEVPRDELVAKLVAGGYQRMTLVEDKGEFSLRGHVLDIFPPLEDSPLRLEFDGDD 202 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQV 248 ++SLR FD SQR+ EA L PA E + + R P ++ ++ Sbjct: 203 LESLRAFDPASQRSTGRREAFVLSPAREVILSEERRQRALQNIRYRAAALELPRNVRDRL 262 Query: 249 SKGTLPAGIEY-WQPLF---FSEPLPP--------------------LFSYFPANTLLV- 283 S+ T+ AG+ + PLF F E L P F Y P N +V Sbjct: 263 SE-TIDAGLSTSFNPLFLPLFYESLAPTSPDSPTENATATQAVRLGTFFDYLPGNCFVVL 321 Query: 284 -NTGDLETSAERFQAD---TLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL 339 + +E + ER + + L + E G + L ++ ++ D +L+ + R+ L Sbjct: 322 DDALAIENAGERIENEIDRCLLKAEREG----KFYLEREASYVTKDAFIKDLRRFQRMIL 377 Query: 340 K 340 + Sbjct: 378 E 378 >UniRef50_Q7UQN7 Transcription-repair coupling factor n=1 Tax=Rhodopirellula baltica RepID=Q7UQN7_RHOBA Length = 1181 Score = 620 bits (1600), Expect = e-176, Method: Compositional matrix adjust. Identities = 367/991 (37%), Positives = 559/991 (56%), Gaps = 70/991 (7%) Query: 110 VNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALL 169 + +QRV + L + G + + +R L AG+ V V GE+A+RG LL Sbjct: 211 IGAAIQRVPSVTSLEKATRELAVGDIVDPEVIRRWLAEAGFAAVTAVQVPGEFASRGGLL 270 Query: 170 DLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRS 229 D++ P R+++FDDEI+S+R FD +QR+ E + + L P Sbjct: 271 DVYSPDQPQPIRIEWFDDEIESIRRFDAATQRSSETLSKVELAAIGTQPV---------- 320 Query: 230 QWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT--LLVNTGD 287 + F + + + V T+ A + Y P +T L+++ D Sbjct: 321 --KSPFAEEENNDEPLDLVVDDTVGAEAT-------------IVDYLPEDTVVLVIDPSD 365 Query: 288 LETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTK 347 S+ A +A+ E ++ + EL SELK+ V + Sbjct: 366 CHQSSNALLA-RVAKTER---------------FVSMRELLSELKSHKVVTGTSLAEGAP 409 Query: 348 AANANLGFQKLPDLAVQAQQ-KAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIK 406 + +L A + K+ +D++ E VV ++G+R L ELL Sbjct: 410 SDVVDLHTASADSFATSLDETKSKVDSVAAGHEVI---VVGDTPADGQR--LTELLEDT- 463 Query: 407 IAPQRIMRLDEASDRGR-YLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTI 465 +A+ +GR ++ + GF T + ++ ++L R RR +R Sbjct: 464 ----------DAAKQGRLHMTVADLSGGFRLTDAEILVLTGAELF-HRSPVRRAKTRTRG 512 Query: 466 NPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSS 525 P I + +L G V+HL HG+G Y G+ ++E G E+L + + K++VP S Sbjct: 513 KP---IDSFTQLTPGDLVIHLSHGIGLYRGLNSIEKNGQHQEHLTIEFDGGTKIHVPASR 569 Query: 526 LHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKH 585 + L+ RY GG + L K+GG +W+ ++ A V D+A ELL++ A+RA + G Sbjct: 570 IQLVQRYVGGTKNRPKLAKIGGISWTNQKKAAEAAVTDMADELLELQAKRATRLGIPMSP 629 Query: 586 DREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA 645 D E + F SFP+ TPDQ AI A+ DM P MDRL+CGDVGFGKTEVAMRAAF A Sbjct: 630 DNEWQRQFDASFPYLETPDQLSAIEALKIDMEAPRPMDRLICGDVGFGKTEVAMRAAFKA 689 Query: 646 VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID 705 V + QVAVLVPTT+LA+QHY +FR+R A +PV I +SRF + EQ + + E+ GK D Sbjct: 690 VSSGYQVAVLVPTTVLAEQHYQSFRERMAEFPVEIRKLSRFCTPAEQRETVKEIRRGKAD 749 Query: 706 ILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNM 765 I+IGTH++ DV+F +LGL+++DEE RFGV KER+K +NVD+LTL+ATPIPRTL+M Sbjct: 750 IVIGTHRVASKDVEFNNLGLVVIDEEQRFGVAVKERLKTQHSNVDVLTLSATPIPRTLHM 809 Query: 766 AMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKA 825 A+ G+RD+S + TPPA R+AV+T V +D ++R AI+RE+ RGGQ+Y+++N + ++ Sbjct: 810 ALVGVRDISNLETPPAERMAVETKVTRWDDKMLRSAIVRELNRGGQMYFVHNRIGDMDDL 869 Query: 826 AERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 885 A R+ +VPE RI IGHGQM E LE+VM DF +F++L+ TTIIE+G+DIP ANT+ I Sbjct: 870 AARIKAIVPELRIGIGHGQMEEGALEQVMVDFIDHKFDMLLATTIIESGLDIPNANTMFI 929 Query: 886 ERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFAL 945 + + +GL+ LHQLRGRVGR HQAY +LL K +T +A KRL AI +GAGFA+ Sbjct: 930 DDGNRYGLSDLHQLRGRVGRYKHQAYCYLLVSPNKRLTPEASKRLRAIEEYSQMGAGFAI 989 Query: 946 ATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVE 1005 + DLEIRGAG LLG +QSG + +G+ +Y +LLE+AV + L S +++ Sbjct: 990 SMRDLEIRGAGNLLGSQQSGHIAAVGYEMYCQLLEDAVRQAQ-----KLPPKLSADVDID 1044 Query: 1006 LRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIAR 1065 L + + LP+D++P++ ++ Y+R+ + +++ I+ EL DRFG P PA +L++ Sbjct: 1045 LPIEAYLPEDYVPNLRHKIDLYRRMTRIEKAADVKAIREELEDRFGSPPPPAIRMLELCE 1104 Query: 1066 LRQQAQKLGIRKLEGNEKGGVIEFAEKNHVN 1096 LR A G+ L N++ V++++ ++ +N Sbjct: 1105 LRLDAASWGLVSLTTNDRFIVLQYSNRSRMN 1135 >UniRef50_UPI00016C571B transcription-repair coupling factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C571B Length = 1121 Score = 619 bits (1595), Expect = e-175, Method: Compositional matrix adjust. Identities = 383/1023 (37%), Positives = 558/1023 (54%), Gaps = 102/1023 (9%) Query: 73 WETLPYDSFSPHQDIISSRLSTLYQLPTMQRG------VLIVPVNTLMQRVCPHSFLHGH 126 WE+ P S D +++ L Q G V++ ++ + Q V + L Sbjct: 96 WESWPVSSNRGKLDPVTTSRLRLLQQLQRAGGAEGPPKVVVCGISAVCQPVPERADLAAR 155 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 + G + L L + GY+ VD V GE++ RG + D+FP S P+RL+FF Sbjct: 156 GRTLAAGDIVEPSELAEWLVANGYKRVDAVEFPGEFSRRGGICDIFPPDSPDPFRLEFFG 215 Query: 187 DEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQ 246 DE++ LR F SQR+LE+ + + LLP TD Sbjct: 216 DEVEGLRTFAAGSQRSLEKKDRVTLLP-----TD-------------------------- 244 Query: 247 QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT--LLVNTGDLETSAERFQADTLARFE 304 Q + G PA L Y P ++ +L+ DL A+ F Sbjct: 245 QGTAGARPAKGH-------------LADYLPPDSWVVLIEPRDLREQAKHFHERVST--- 288 Query: 305 NRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQ 364 D + ++ F+ L P V L P+ A+ +L + + + Sbjct: 289 ---TDGLH----------TTEQAFAGLMKLPSVVLSALPRPSVEASVHLRVESVNRFSGS 335 Query: 365 AQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY 424 + D L V+ + +SE L E+L K+A +RL R + Sbjct: 336 VHRVR--DELDSIAHNATARVLVACQSEAEVHRLTEVLKAGKLAESHRLRLVTGHVRSGF 393 Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 ++ E G + V I DLL + + S RTI I + +L+ G VV Sbjct: 394 RLV---ESGVI--VLGSHEIFHKDLLPPGT-KAQAKSSRTIE-SRAIDSFLDLNDGDYVV 446 Query: 485 HLEHGVGRYAGMTTLE-AGGI--TGE-----------------YLMLTYANDAKLYVPVS 524 H+ HG+ R+ GM L+ A G+ TGE +L+L + + LYVP + Sbjct: 447 HVAHGIARFRGMRMLDKASGVQDTGEDSLFPDERPANPAAEEEHLVLEFRDGIFLYVPAT 506 Query: 525 SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 + L+ +Y GG++ L K GG AWSR ++K +E VRD+AAE+++I A R A G F Sbjct: 507 RIDLVQKYVGGSQAEPQLSKPGGAAWSRKKEKVSEAVRDMAAEMINIQALRQAVPGHQFP 566 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 D + + F +FP++ TPDQ AI V D+ + MDRL+CGDVG+GKTEVA+RAAF Sbjct: 567 PDSDWQKEFEAAFPYQETPDQLSAIAEVKGDLEKTKPMDRLICGDVGYGKTEVAIRAAFK 626 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 AVD+ KQVAVLVPTT+LA+QH+ F RFA +P ++ ++RF+S +Q + L ++A G++ Sbjct: 627 AVDSGKQVAVLVPTTVLAEQHFRTFTQRFAEYPFMVDAVNRFKSGAKQKETLKKLAAGEV 686 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 D+++GTH+LL DV FKDLGL+++DEE RFGV HKER+K +RA VD+LT+TATPIPRTL+ Sbjct: 687 DVIVGTHRLLSKDVTFKDLGLVVIDEEQRFGVEHKERLKHLRATVDVLTMTATPIPRTLH 746 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 ++ G+R++S + TPPA R V+T + +D +R AILRE+ RGGQVY+++N V++I + Sbjct: 747 ASLLGIREISNLETPPADRQPVETHITRWDDKQLRNAILREMNRGGQVYFVHNRVQDIYE 806 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 A ++ LVPEA++ +GHGQM +LE+ M F + ++LV TTIIE+G+DIP ANTI Sbjct: 807 VATKIEILVPEAKVTVGHGQMDAHDLEKAMVRFVRKEADILVATTIIESGLDIPNANTIF 866 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 I+ AD +GLA LHQLRGRVGRS H+AYA+ + K + AQ+RL+AI +LGAGF Sbjct: 867 IDEADTYGLADLHQLRGRVGRSKHRAYAYFIVNPLKLLNPTAQRRLKAIEEFTELGAGFK 926 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 +A DLEIRGAG +LG EQSG + IG+ LY +LLENAV ALK D+ V Sbjct: 927 IAMRDLEIRGAGNILGGEQSGHIAAIGYELYCQLLENAVRALKHQPPKVAVDVV-----V 981 Query: 1005 ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA 1064 +L PS LP D++ R+ Y+R+A + +L + + EL DR+G P+P LL Sbjct: 982 DLPWPSYLPRDYVQGQKLRIEVYRRLARLRDPAKLADFRTELRDRYGEPPEPVEWLLRTT 1041 Query: 1065 RLR 1067 +R Sbjct: 1042 EVR 1044 >UniRef50_D2RAQ2 Transcription-repair coupling factor n=6 Tax=Actinobacteridae RepID=D2RAQ2_GARVA Length = 1202 Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust. Identities = 318/669 (47%), Positives = 445/669 (66%), Gaps = 36/669 (5%) Query: 433 GFVDTVRNLALICESDLLGERVA-------RRRQDSRRTINPDTLIRNLAELHIGQPVVH 485 GF+D V +A++ E DL G+ A +RR R+ I+ L EL G VVH Sbjct: 486 GFIDNVARIAILTERDLTGKSSASAQLKTPKRR---RKAID-------LMELKPGDFVVH 535 Query: 486 LEHGVGRYAGM----TTLEAGGITGEYLMLTYA-------NDAKLYVPVSSLHLISRYAG 534 +HG+GR+ GM + G T EYL++ YA ND KL++P L L+S+Y G Sbjct: 536 EQHGIGRFVGMKQRNIAVSGGSATREYLVIEYAPSKRNAPND-KLFIPTDQLDLVSKYIG 594 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 E L+KLGG W++ + KA + V ++A L+ +Y+ R GFAF D + Sbjct: 595 A--EIPKLNKLGGSDWAQTKAKAKKHVHEIAENLIKLYSARQQSRGFAFSKDTPWQKELE 652 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 D+FP++ T DQ I+ V +DM P+ MDRL+CGDVGFGKTE+A+RAAF AV + KQV V Sbjct: 653 DAFPYQETADQLTTIDEVKADMENPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVVV 712 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 LVPTTLL QQHY+ F +RF +PV++ +SRF+++KE + LA + +G ID++IGTHKLL Sbjct: 713 LVPTTLLVQQHYETFTNRFEGFPVKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKLL 772 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 +KFKDLGL+I+DEE RFGV HKE +KA+R NVD+L+L+ATPIPRTL MA++G+R++S Sbjct: 773 NPSIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMS 832 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 +ATPP RL V T+V YD+ V I RE+LRGGQV+Y++N VE+I A ++ ELVP Sbjct: 833 TLATPPEDRLPVLTYVGAYDNSQVAACIKRELLRGGQVFYVHNRVEDISSVASKIQELVP 892 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 + R+AI HG+M E++L+ V+ DF H+ +VLVCTTIIETG+DI ANT+I++ AD FGL+ Sbjct: 893 DVRVAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLS 952 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QLHQLRGRVGR H +AYA+ L K MT + RL IA LG+GF +A DLE+RG Sbjct: 953 QLHQLRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQHTALGSGFDVAMKDLELRG 1012 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPD 1014 G LLG+EQSG +E +GF LY+ ++ AV+ K EP E + ++L + + LP Sbjct: 1013 TGNLLGDEQSGHIEGVGFDLYVRMVSEAVEKYK---EP--ERVEPVCVTIDLPVEASLPV 1067 Query: 1015 DFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 D+I RL Y+++A+AK ++L+E+ EL+DRFG P+ +L D+ARLR +A+++G Sbjct: 1068 DYIASDKLRLEAYRKLAAAKDNSDLQELHDELLDRFGNPPEEFESLCDVARLRFKAREIG 1127 Query: 1075 IRKLEGNEK 1083 I ++ K Sbjct: 1128 ITQISSQGK 1136 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/202 (31%), Positives = 102/202 (50%), Gaps = 15/202 (7%) Query: 28 ATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD---QMVMNLADWETLPYDSFSPH 84 + +VA +A++ PVV+I P ++A + + D Q V L WETLP++ SP Sbjct: 82 SAIVAALAKKK--PVVVIVPSSRDAEDFIASVRDWYDGDAQDVAKLEAWETLPHERLSPR 139 Query: 85 QDIISSRLSTLYQLPTMQRG--------VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 D ++SR++ +L + VL++PV +L+Q V L+ + G+ L Sbjct: 140 ADTVASRIAVFRRLCHPENNTSLFGPIRVLVMPVRSLIQPVV-EGIGDIDPLLFECGKEL 198 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 + + +L Y VD VME GE+A RG ++D+F P R++FF DEID+++ F Sbjct: 199 TLEYAVKRLVENAYNRVDLVMERGEFAVRGGIIDVFAPTMTHPVRIEFFGDEIDTIKQFH 258 Query: 197 VDSQRTL-EEVEAINLLPAHEF 217 QRT + +I P E Sbjct: 259 ASDQRTYGNNIASIWATPCREL 280 >UniRef50_C0GM56 Transcription-repair coupling factor n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GM56_9DELT Length = 1144 Score = 616 bits (1588), Expect = e-174, Method: Compositional matrix adjust. Identities = 389/1158 (33%), Positives = 611/1158 (52%), Gaps = 86/1158 (7%) Query: 23 TGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFS 82 G A +AE R VL+ P + + F+ + WE+ + S Sbjct: 26 AGPATQIYLAEYLRRQGHDAVLVLPPNSDVKQYMQLAEIFSRTSMEKDKFWESSWFFLPS 85 Query: 83 PHQDIISSR------LSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 P SSR ++++ L + ++ ++++ + P + L++ G+ Sbjct: 86 PGH---SSRPAWGRIWASMFGLMQQKGKAAVLTADSMLNYLPPPDVVRDVFLLLMTGEET 142 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 + + +L GY V V GE + RG +LD++ G P RL+FF + ++S+R F+ Sbjct: 143 NPGDILDKLVEWGYVRVFMVTSPGEVSQRGDILDIYAPGYPHPLRLEFFGNHLESIRTFE 202 Query: 197 VDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQ---WRDTFEVKRDPEHIYQ---QVSK 250 SQR++ ++E +LP P + ++ R + + T E+ R+ + + Sbjct: 203 PVSQRSIRQLEECLILPVSPSPMEDHLVKQARDKADYLKSTGEISRELRQRLEFKLEEKD 262 Query: 251 GTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDP 310 PAG+ Y P SE LP +F LV+T L TS E + E G Sbjct: 263 PFYPAGLFYSSPGEISEFLPEDAHFF-----LVDTARLRTSLEEEEWKLKQWAEAEGW-- 315 Query: 311 MRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAP 370 P+ L+ + P V+ +T + F++L V Q+ Sbjct: 316 ------PEKLFFQ-----------PEVRART----MWHNRRQVVFERL----VMGQKSRG 350 Query: 371 LDALRKFLETFDGPVVFSVESEGRREA---LGELLARIKIAPQRIMRLDEASDRGRYLMI 427 +D K + +F +F + RR L L + A Q I+ + A R ++L + Sbjct: 351 VDLGEKEINSFSD--IFWKPQDNRRPWPAFLQALKEWKRTANQVILNFNTAKSRDKFLDV 408 Query: 428 GAAEH-----GFVDTVRNLALICESD------------LLGERVARRRQDSRRTINPDTL 470 E F VR L + +LGE V + +R+ P Sbjct: 409 IQKEDIELKTSFDPEVRGLYAVVAGTGTGMHMSWNHIYILGEDVLQ--PGTRQRTGPTGR 466 Query: 471 IRNLA---ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLH 527 + +A ++ G +VH ++G+GR+ G+ + +YL+L YAND KLYVPV Sbjct: 467 FKGIARVEDIEPGDMLVHRDYGLGRFGGLERISTDTQASDYLVLYYANDDKLYVPVDRFS 526 Query: 528 LISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 587 L+ +Y G + L KLGG WS+ + + + ++ +A +L+D+YAQR +G+++ Sbjct: 527 LVQKYKGPDGADPALDKLGGANWSKTKNRVRKAIQKIAKDLVDMYAQRKVVKGYSYSPPE 586 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 E YQ F ++F F+ TPDQ QAI V+ DM MDRLVCGDVGFGKTEVAMRAAF AV Sbjct: 587 ELYQEFANTFGFQETPDQEQAIREVMQDMESDEPMDRLVCGDVGFGKTEVAMRAAFRAVQ 646 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 + KQVA+L PTT+LA+QHY NF R ++ + + M+SRF Q IL +G++DIL Sbjct: 647 DGKQVALLCPTTVLAEQHYQNFVQRMQDFAINVRMLSRFVPRNRQKIILEGARKGEVDIL 706 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 IGTH++L DV L L+I+DEE RFGVRHKE++K R N+D+LTLTATPIPRTL +++ Sbjct: 707 IGTHRILSQDVILPRLSLMILDEEQRFGVRHKEKLKQYRQNIDVLTLTATPIPRTLQLSV 766 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 SG+R LS+I TPP R V++ + E D +R A+ RE+ R GQV+++YN V+ ++ E Sbjct: 767 SGIRTLSVIETPPLDRKPVESSIIERDRDFLRHALQRELDRQGQVFWVYNRVQGLESVME 826 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 + +L+PEAR+ + HGQM ER LE M+ F H ++LVCT IIE+G+D P ANT+I+++ Sbjct: 827 YVQDLMPEARVDMAHGQMPERILEENMHRFWHHEIDILVCTAIIESGLDFPRANTLIVDQ 886 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 A FGL QL+QLRGRVGRS QAYA+ + P + + ++KR++ I ++ LGAGF +A Sbjct: 887 AHMFGLGQLYQLRGRVGRSQEQAYAYFIVPSVRELGEKSRKRMQIILDMDYLGAGFQVAM 946 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR 1007 DL +RGAG +LGE QSG + +G L++E+++ V LK DL E+ + Sbjct: 947 EDLRLRGAGNILGEVQSGQIGKVGLDLFLEMMQEEVGKLKGDTSYGSRDL-----EINIG 1001 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 + +P+D+IPD RL +Y+ ++ + + +++ EL D FG LP+ +++ +++ Sbjct: 1002 FSAYIPEDYIPDAAERLKYYRMLSGGAQQQDFDQLSQELQDLFGKLPEELHNFINVLKIK 1061 Query: 1068 QQAQKLGIRKLEGNEKGGVIEF-AEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLS 1126 + LG +K + E IE+ AE +NP L+ ++K RL P++L+ Sbjct: 1062 HALKALGPQKADFMENRLSIEWSAETGELNPEKLVQWIEKNSSIARLVPPSKLEI----- 1116 Query: 1127 ERKTRIEWVRQFMRELEE 1144 R R V F+ EL++ Sbjct: 1117 -RLNRDSNVLNFLYELQD 1133 >UniRef50_Q1AXK2 Transcription-repair coupling factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXK2_RUBXD Length = 1054 Score = 615 bits (1587), Expect = e-174, Method: Compositional matrix adjust. Identities = 409/1052 (38%), Positives = 593/1052 (56%), Gaps = 88/1052 (8%) Query: 30 LVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY-DSFSPHQDII 88 L A +A R+ PV+L++ ++A R + + FTD+ V++L +PY D F P + Sbjct: 17 LRAYLAARNERPVLLLSSTEEDAARYARDAACFTDEPVVHLPS-RGVPYGDVFDPEVWRV 75 Query: 89 SSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSA 148 +R L+ L + + V+ LM+R H L + G L D + +L + Sbjct: 76 GARQRALHALDSAR--VVAAGPLALMERTPLHEPLR-----LAGGVELDMDEVLLRLAAL 128 Query: 149 GYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEA 208 GY V++V GE+A RG +LDLFP P R++++ DE +E V A Sbjct: 129 GYERVERVFRPGEFAVRGGILDLFPSTRRSPVRVEWWGDE--------------VESVRA 174 Query: 209 INLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEP 268 ++L + AA+ ++ ++ D + E + ++ +G G++ Sbjct: 175 VSLATRRAV-KELAAVTVYAAREGDLAGLAAGEEGLPEEARRGVRVPGLDRL-------- 225 Query: 269 LPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELF 328 L + P + +E AE + E V+EL+ Sbjct: 226 ---LLALGPVEPAGLLPDGMEVWAEEPREGVAGGLEGL-----------------VEELY 265 Query: 329 SELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETF-DGPVVF 387 + L P L+ A + P LA A+ P +A R+ DG VF Sbjct: 266 APL---PAADLRFSSGGEGEALSA------PPLAPFAE--TPREAARRLGGLVEDGMAVF 314 Query: 388 SVESEG---RRE--ALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLA 442 G RR ALG++ R +A + D + G Y + G E GF +A Sbjct: 315 IACGSGSQVRRTVYALGQI-GREVVAAEHA---DPSLPPGLYAVPGEVEEGFSYPEGGIA 370 Query: 443 LICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAG 502 ++ + +L + R + + A+L G VVH G+GR+ G+ + E Sbjct: 371 VVRQDAVL-------GRRRERRRRAGRALTSFADLKPGDLVVHAVQGIGRFEGLVSKEVL 423 Query: 503 GITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVR 562 G+T +Y+ +TY L+VP + L+ +Y G + A L +LGG++W+R ++ +VR Sbjct: 424 GVTRDYMQVTYRGGDTLFVPYEQMELLHKYVG---DGARLDRLGGESWARVTERVRRRVR 480 Query: 563 DVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAM 622 +A ELL ++A+RA EGFAF D E + +SFP++ TPDQA AI AV DM +P M Sbjct: 481 MLAGELLRLHAERARAEGFAFPPDGEWERELEESFPYQETPDQAAAIAAVKEDMQRPRPM 540 Query: 623 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM 682 DRLVCGDVGFGKTEVA+RAAF A KQ +L PTT+L QQHY FR+R + VR+E Sbjct: 541 DRLVCGDVGFGKTEVAVRAAFKAALAGKQTLMLAPTTILVQQHYRTFRERLERFAVRVES 600 Query: 683 ISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERI 742 +SRF +A E+ +IL ++A G++DILIGTH LL ++V+ KDLGLL+VDEE RFGVRHKERI Sbjct: 601 LSRFTTAAERRRILRDLASGEVDILIGTHALLGAEVRPKDLGLLVVDEEQRFGVRHKERI 660 Query: 743 KAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAI 802 K ++ +VD+LTLTATPIPRT+ M +SG+RD+S+I TPPA R +V T V YD +VR AI Sbjct: 661 KQLKTSVDVLTLTATPIPRTMQMGLSGLRDISVIETPPAGRRSVLTHVGPYDEELVRRAI 720 Query: 803 LREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRF 862 RE+ RGGQV++++N VE I++AA+RL ELVP R A+ HGQM ER LE VM F Sbjct: 721 EREVARGGQVFFVHNRVETIEEAAQRLRELVPGVRFAVAHGQMPERALEEVMQRFLEGEA 780 Query: 863 NVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAM 922 +VLV TTI+E+G+DI TANT+I+ERAD GLAQL+QLRGR+GRS QAYA+L P Sbjct: 781 DVLVTTTIVESGLDIATANTLIVERADAMGLAQLYQLRGRIGRSTEQAYAYLFAPL--GA 838 Query: 923 TTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENA 982 T +AQ+RLEA+ +LG+GFA+A DLEIRGAG LLG EQSG + +GF +Y+ LLE A Sbjct: 839 TLEAQRRLEALLDFTELGSGFAVAMRDLEIRGAGNLLGAEQSGHIAAVGFEMYLRLLEEA 898 Query: 983 VDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEI 1042 V AL+ E + VE+ + + LP +++ D R+ Y+R ++A + E++++ Sbjct: 899 V-ALER--GEEPERREERPVIVEVLLDAYLPPEYVADEIERVDLYRRASAAGSLAEVDDL 955 Query: 1043 KVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 EL +RFG LP+PAR LL + RL+ ++ G Sbjct: 956 AEELEERFGPLPEPARNLLGLTRLKILGRRAG 987 >UniRef50_B8DPF5 Transcription-repair coupling factor n=6 Tax=Desulfovibrionales RepID=B8DPF5_DESVM Length = 1197 Score = 612 bits (1579), Expect = e-173, Method: Compositional matrix adjust. Identities = 393/1024 (38%), Positives = 581/1024 (56%), Gaps = 51/1024 (4%) Query: 71 ADWETLP-YDSFSPHQDIISSRLSTLYQLPTMQ--RGVLIVPVNTLMQRVCPHSFLHGHA 127 A W P + + + + ++R+++LY L + RG+ I+ V+ L+ ++ P H Sbjct: 104 AQWIVFPQHPAGTRGRGAWAARMASLYALSRREHPRGI-IISVDNLLPKLPPVDIFEHHE 162 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 L + +G+ +S + + Q G+ V GE A RG +LD+FP G E P RL+FF D Sbjct: 163 LRLARGEDMSPELVLDQAIDWGFERAQMVSRPGEAARRGDILDIFPPGYEKPLRLEFFGD 222 Query: 188 EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 247 ++ +R+FD SQR+L +E LLP + E +W+ ++++D +Q Sbjct: 223 TLEDIRLFDATSQRSLASLEEFRLLPVAPVVGCREYREAAARRWK---QLRKDGVIDGEQ 279 Query: 248 VS----------KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQA 297 + G LP G Y + + LP A LL + DL T+ E + Sbjct: 280 AAALARMAEGEVTGLLP-GAWYENATWMEDWLP-----RDAVWLLPDRADLSTALEAART 333 Query: 298 DTLARFENRGVDPMRPLLPPQSLWLR-VDELFSELK-----NWPRVQLKTEH----LPTK 347 + A +R D R L P+ L LR DE + + ++ R+ + E LP + Sbjct: 334 NWEALL-DRQYDEHR-LRQPRPLVLRDADEAQAAWRGRSVAHFERLVMGVERTGVDLPER 391 Query: 348 AANANLG-FQKLPDLAVQAQQ--KAPLDALRKFLETFDGPVVFSVESEGRREALGELLAR 404 +A F P + V + + + ALR++ VV S S+ R +L + Sbjct: 392 RLHAFRDLFAATPSVPVDEDRPWQRLVTALRQWTSERR-QVVLSFASDRSRRKFLKLAEQ 450 Query: 405 IKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRT 464 + P +R A DRG Y ++ G +D + L+ D+L + R+ R Sbjct: 451 DGVRPN--LRYSPA-DRGLYALVAPFRAG-IDLAWDNVLVIGEDVLQPKADRQ---PRVP 503 Query: 465 INPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVS 524 + +L G +VH ++GVGR+ G+ ++ GG+ ++L+L YA + +LY+PV Sbjct: 504 TGAFLGLDKYDDLSPGDLLVHRDYGVGRFGGLHRMDLGGVANDFLLLEYAGEDRLYLPVD 563 Query: 525 SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 L LI R+ GG + L KLGG W + KA + + +AA+L+ +YA R +G+ + Sbjct: 564 RLSLIQRFKGGDDSVPSLDKLGGSGWRACKDKARKAIEKIAADLVQMYAYRKVAKGYRYG 623 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 E Y+ F SF FE TPDQA+AI VL DM +P MDRLVCGDVGFGKTEVA+RAAF Sbjct: 624 PLGELYREFEASFGFEETPDQARAIQDVLDDMEKPEPMDRLVCGDVGFGKTEVALRAAFR 683 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 A +QVA+L PTT+LA+QHY FR R A +PV + M+SRF S ++Q ++L A G+I Sbjct: 684 AAAEGRQVALLCPTTVLAEQHYQTFRSRLAGFPVNVGMLSRFVSRQKQKEVLQAAARGQI 743 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 DILIGTH+LL DV+ +LGLL++DEE RFGVRHKE++K R NVD LTLTATPIPRTL Sbjct: 744 DILIGTHRLLSDDVQLPNLGLLVLDEEQRFGVRHKEKLKKFRKNVDALTLTATPIPRTLQ 803 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 ++MSG+R+LS+I T P R V T + E D +R+ + REI R GQV++++N V+ +++ Sbjct: 804 LSMSGIRELSVIETAPPERKPVATALIERDQNALRQILEREIAREGQVFWVHNRVQGLER 863 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 AE + LVP AR+ + HGQM ERELE M+ F H +VLVCT I+E+G+D P ANT+I Sbjct: 864 VAEFVRGLVPTARVGMAHGQMGERELEDTMHKFWHGELDVLVCTAIVESGLDFPRANTLI 923 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 +++A FGL QL+QLRGRVGRS QAYA + + + A++R+ I L+ LGAGF Sbjct: 924 VDQAQMFGLGQLYQLRGRVGRSDRQAYAVFVVSDAERLPEQARQRMRIILELDYLGAGFQ 983 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 +A DL +RGAG +LGE QSG M +G LY+E+LE V LK P E S + E+ Sbjct: 984 VAMEDLRLRGAGNILGEVQSGHMTRLGLDLYLEMLEEEVARLKGA--PPRE---SVEPEL 1038 Query: 1005 ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA 1064 + + + +P+ +I D RL FYK ++SA L+++++EL DRFG P R L + Sbjct: 1039 NIGLAAHIPETYIGDARERLKFYKALSSAPDAATLQDVEMELRDRFGPCPPELRNFLAVL 1098 Query: 1065 RLRQ 1068 L++ Sbjct: 1099 VLKR 1102 >UniRef50_B5YL15 Transcription-repair coupling factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YL15_THEYD Length = 1042 Score = 610 bits (1574), Expect = e-173, Method: Compositional matrix adjust. Identities = 317/806 (39%), Positives = 506/806 (62%), Gaps = 21/806 (2%) Query: 325 DELFSELKNWPRVQ---LKTEHLPTKAANANL--GFQKLPDLAVQAQQKAPLDALRKFLE 379 D +F+ KN+ + +K HLP K + ++ G + L + +++ + + L+ Sbjct: 225 DNIFTVDKNFTNKKFNIVKISHLPVKFSTKSVDAGDKTFYGLGILPNERSSILDFPRNLK 284 Query: 380 TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY-LMIGAAEHGFVDTV 438 P++FS+ S G+ E + E+L I I + + + G+Y + I + GF Sbjct: 285 KLGIPIIFSISSRGKAETIKEVLFNHDIIAPLIHKNEIGTYSGKYAITISDLQEGFYR-- 342 Query: 439 RNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTT 498 NL +I + +L GE+ ++++ + + + D L E++ G +VH EHG+G + G+ Sbjct: 343 ENLMIITDFELFGEKTLKKKKLAIQKLPIDGL-----EINEGDYIVHKEHGIGIFRGIKR 397 Query: 499 LEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAA 558 + G + L+L Y + LYVP ++ I RY+ P+ KLG + W +A+++ Sbjct: 398 QKYEGTEEDVLVLEYKDGDILYVPTWNIGKIYRYSAKEGFIPPIDKLGSNRWQKAKERER 457 Query: 559 EKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQ 618 +++ D+A +L+ +YAQR + GF + D E ++ F D FP+E T DQ +AI+A+L M + Sbjct: 458 KRIHDIADKLIKLYAQRKTERGFIYSEDTEIHKNFDDFFPYEETEDQQKAIDAILKKMRE 517 Query: 619 PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPV 678 P M+ L+CGD G+GKTEVAMRA+F AV + KQVAVLVPTTLL +QHY F+ RF +PV Sbjct: 518 PFPMEVLLCGDAGYGKTEVAMRASFRAVYDGKQVAVLVPTTLLCEQHYRTFKKRFEAFPV 577 Query: 679 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH 738 +IE +SRFRS KE +++ + GK+DILIGTH ++ +V F DLGLLI+DEE +FGV H Sbjct: 578 KIEYLSRFRSEKEIKKVIEDTKLGKVDILIGTHIIILKEVDFFDLGLLIIDEEQKFGVIH 637 Query: 739 KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVV 798 KE+IK VD++T+TATPIPRTL + +SG+ D+ +I TPP RLAVKTFV + + +++ Sbjct: 638 KEKIKEKYPKVDLITITATPIPRTLQIGLSGLWDIFVIQTPPKERLAVKTFVIQENELII 697 Query: 799 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 858 +EAI +EI RGGQ+Y+L+N + +I+ ++ +LVP ARI + HG+M+E+ L+++M DF Sbjct: 698 KEAIEKEIQRGGQIYFLHNRIHDIELVKSKIQKLVPMARIGVAHGRMKEKMLDKIMLDFI 757 Query: 859 HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 + + ++L+CT+II +G+DIP NTIII++A FGL+ L+Q+RGRVGRS+ QA A+L+ P Sbjct: 758 YGKIDILLCTSIIASGLDIPNVNTIIIDQAQTFGLSDLYQIRGRVGRSYRQANAYLVIPP 817 Query: 919 PKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMEL 978 + ++ DA+KR++AI + LGAGF +A DLEIRGAGELLG EQSG + +GF LY+E+ Sbjct: 818 EEILSEDAKKRIKAIQEMSYLGAGFHIALRDLEIRGAGELLGVEQSG-VNRLGFDLYIEM 876 Query: 979 LENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENE 1038 L AV +K P+L + E++ +P+ +P+++I + R+ Y++++ ++E Sbjct: 877 LNEAVKEIKGEVLPAL-----KLPEIKFSIPAFIPEEYIKETPMRIRIYRKLSQISEDSE 931 Query: 1039 LEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPA 1098 +E++ E+IDRFG+ P + IAR+R K I+ E +K +F + +++ Sbjct: 932 IEKLYDEIIDRFGMPPKEVENIFKIARIRLLVSK--IKASEVKQKKNTFKFKMEENLDTG 989 Query: 1099 WLIGLLQKQPQHYRLDGPTRLKFIQD 1124 ++ LL LKF QD Sbjct: 990 FVNRLLHILTGFKNRGIIKNLKFYQD 1015 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 40/153 (26%), Positives = 84/153 (54%), Gaps = 9/153 (5%) Query: 89 SSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSA 148 + R+ ++++ + +I V++ ++ PH + +KKG + R+ L L + Sbjct: 89 TERMIAIFKILNERNKKIITTVDS--AKIPPHI----ETINIKKGGTIEREFLAKNLINL 142 Query: 149 GYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEA 208 GY V+ V + GE++ G + D++ +G E P R++FF DEI+ +++F D+QR+ ++ Sbjct: 143 GYSKVELVTQEGEFSEHGWVFDIWGIGEEYPARIEFFGDEIEEIKLFYPDTQRSFKDKNE 202 Query: 209 INLLPAHEFPTDKAA-IELFRSQWRDTFEVKRD 240 I ++ A E + +ELF ++ + F V ++ Sbjct: 203 IWIIQAEEKEINNIELLELF--EFDNIFTVDKN 233 >UniRef50_C8P217 Transcription-repair-coupling factor (ATP-dependent helicase MFD) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P217_ERYRH Length = 1138 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 361/1060 (34%), Positives = 590/1060 (55%), Gaps = 33/1060 (3%) Query: 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWE 74 + + L+ A LV ++ P+ +I + Q A L++EI + V+ E Sbjct: 21 KSVFAHLSVVQEALLVLGSSKISKKPLFIIKENEQQASNLYNEIKHLDENANVVYYNHEE 80 Query: 75 TLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 +L ++ + + ++R+ L+++ + I ++++ P L + +K G Sbjct: 81 SLRVEAIVQSEIMKANRIDALFKIINGDFDICITHAIASVRKLSPAEVLKASIINIKTGD 140 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 194 L +L+ GY V V + YA RG + D+F + E P R++FFD E+DSLR Sbjct: 141 EWEPLQLARELERLGYTRVKYVEKPFTYAIRGGVCDVFSIQMEQPLRIEFFDVEVDSLRY 200 Query: 195 FDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLP 254 FD+++QR+L VE + A + + I+ + E + + I++ K L Sbjct: 201 FDIENQRSLSRVEEATIAFATDILLKENDIQEISNALTSKIEGIENNDLIHEMEQKRELL 260 Query: 255 AGIEYWQPLF----FSEPLPPLFSYFP-ANTLLVNTGDLETSAERFQADTLARFENRGVD 309 ++ L+ F ++ Y ANT + +E + ++ D+ E + Sbjct: 261 QMNQFDVTLYPLLSFWSNYATIYDYLKDANTYMSPIEAIERTLKQNALDSHTFIEEQY-- 318 Query: 310 PMRPLLPPQSLWLRVDELFSELKNWPRVQLKTE---HLPTKAANANLGFQKLPDLAVQAQ 366 M ++ ++ + + ++ + + +TE +P +AN V Sbjct: 319 EMNQMIFVSDIFESFERIKAKHTHREIFEYQTEGEVFIPWHSANI-----------VSES 367 Query: 367 QKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLM 426 + + L+K E V+ +++ + + + +L + + + D+ + G Y+ Sbjct: 368 IEQTMKWLKK--EAITQKVIITLDEDTMEDFIKIMLQQ---GVEYQVLTDKPTSNGIYID 422 Query: 427 IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 G GF+ N + ++L + R D++ + ++L L++L VVH Sbjct: 423 YGHITSGFILEDLNTVVYTANELYKYKKKMFRYDNK-FLKAESL-SQLSDLDTLDYVVHR 480 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLG 546 ++G+G+Y G+TT E GI +++ + Y + +L+VP+ +L+ ++ + L KLG Sbjct: 481 QYGIGKYMGITTKEIEGIHKDFMRILYRDGDELFVPLEQFNLVRKFMSREAASVRLSKLG 540 Query: 547 GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606 W + +++ + V DVA +L+ +Y+ R GFAF D E + F D+F +E T DQ Sbjct: 541 TSTWQKNKERIKQDVADVADKLVTLYSTRMDASGFAFSPDTEYQKQFEDAFEYELTQDQK 600 Query: 607 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 666 AI+ + DM + + MDRL+CGDVGFGKTEVA+RAAF A +HKQV L PTT+L+QQH Sbjct: 601 TAIDEIKRDMERDVPMDRLLCGDVGFGKTEVAIRAAFKAFVDHKQVVFLCPTTILSQQHA 660 Query: 667 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 ++R +++PV IE+++RF S KE+ +I+ V +GK+DIL+GTH++L DVKFKDLGLL Sbjct: 661 RTLKERLSDFPVTIEVLNRFVSDKEKNEIIQRVKDGKVDILVGTHRVLSRDVKFKDLGLL 720 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 I+DEE RFGV HKERIK + +VD+L+L+ATPIPRTL M++ G+R LS + PP+ RL V Sbjct: 721 IIDEEQRFGVEHKERIKEFKVSVDVLSLSATPIPRTLQMSLIGLRSLSQLNMPPSNRLPV 780 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 T++ E + + + I +E+ R GQV+YL+N+VE I A +A V A +A+ HGQM Sbjct: 781 MTYIIEKNQKTINDIISKELNRDGQVFYLFNNVEQIYSVASVIANHVEAANVAVVHGQME 840 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 E+E VM F + NVLVCTTIIETGIDIP ANTII++ A FGL+QL+Q++GRVGRS Sbjct: 841 RHEIEDVMIRFISKEINVLVCTTIIETGIDIPNANTIIVDNAHRFGLSQLYQIKGRVGRS 900 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 AYA+ + P+ + +T AQKRL+AI LG+G+ +A DL IRGAGELLG QSG Sbjct: 901 DRLAYAYFVVPNKRGLTELAQKRLQAIKEFTQLGSGYKIAMRDLTIRGAGELLGGNQSGF 960 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026 ++T+G LY++LL+ A+ A + G+E + D+ +Q L++ LP+DF D +L Sbjct: 961 IDTVGIDLYVQLLKEAI-AKRQGKE--VIDV-EEQERFNLKVDGYLPEDFTSDDGEKLDL 1016 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARL 1066 Y++I ++ +EL+ + DR+G LP+ + LL+ RL Sbjct: 1017 YQQINQIQSIDELKHFNEMIDDRYGKLPNSVKMLLEKTRL 1056 >UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamily II helicase) n=34 Tax=Lactobacillaceae RepID=Q03SZ8_LACBA Length = 1180 Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust. Identities = 295/628 (46%), Positives = 436/628 (69%), Gaps = 7/628 (1%) Query: 440 NLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTL 499 +L +I E+++ ++V ++R R+T+ +++ +L G VVH+ HG+G++ GM TL Sbjct: 461 SLVVITEAEMF-QKVTKKRP-RRQTMANAERLKSYTDLKPGDYVVHVNHGIGKFIGMQTL 518 Query: 500 EAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAE 559 G+ +Y+ + Y ++A+L++PV+ L+LI +Y ++ ++KLGG W++ + K A Sbjct: 519 TVDGVHQDYMTIDYQDNAQLFIPVTQLNLIQKYVSSEDKKPKINKLGGSEWAKTKSKVAA 578 Query: 560 KVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQP 619 K+ D+A EL+D+YA+R+A++G+AF D F + FP+ TPDQ + I V DM +P Sbjct: 579 KIEDIADELVDLYAKRSAEKGYAFPVDDSLQHDFENDFPYAETPDQLRTIEEVKHDMEKP 638 Query: 620 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 MDRL+ GDVG+GKTEVA+RAAF AV+ KQVA LVPTT+LAQQHYD RF +P+ Sbjct: 639 RPMDRLLVGDVGYGKTEVALRAAFKAVEAGKQVAFLVPTTILAQQHYDTMVSRFEGYPIN 698 Query: 680 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK 739 +EM SRFR+ K+ Q + ++ G++DI++GTH+LL DVKFK+LGL++VDEE RFGV+HK Sbjct: 699 VEMFSRFRTTKQIHQAIKDLETGQLDIVVGTHRLLSQDVKFKNLGLVLVDEEQRFGVKHK 758 Query: 740 ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVR 799 ER+K ++ANVD+LTLTATPIPRTL+M+M G+RDLS+I TPPA R ++T+V E ++ ++ Sbjct: 759 ERLKQLKANVDVLTLTATPIPRTLHMSMLGVRDLSVIETPPANRFPIQTYVMEQNAGAIQ 818 Query: 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 + I RE+ RGGQV+YL+N V++I+K ++ LVPEAR+ HG+M E +LE V+ DF Sbjct: 819 DGIRREMQRGGQVFYLHNRVDDIEKTVGQIQVLVPEARVGYIHGKMTEAQLEGVLFDFLR 878 Query: 860 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 ++VLV TTIIETGIDIP ANT+ +E AD GL+QL+QLRGR+GRS+ AYA+ Sbjct: 879 GDYDVLVTTTIIETGIDIPNANTLFVENADRMGLSQLYQLRGRIGRSNRVAYAYFTYQPN 938 Query: 920 KAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELL 979 K +T ++KRLEAI +LG+GF +A DL IRGAG LLG++Q G + ++G+ LY ++L Sbjct: 939 KVLTEVSEKRLEAIKDFTELGSGFKIAMRDLSIRGAGNLLGKQQHGFINSVGYDLYTQML 998 Query: 980 ENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENEL 1039 +AV A K G++ T +EL + + LP D+I D ++ YKRI + ++E+ Sbjct: 999 SDAV-AKKRGQKTQ----PKTDTTIELGVEAYLPSDYIEDEQQKIEMYKRIRQLEDDDEV 1053 Query: 1040 EEIKVELIDRFGLLPDPARTLLDIARLR 1067 EI+ +LIDRFG P LL I +L+ Sbjct: 1054 SEIQADLIDRFGEYPPAVDQLLTIGQLK 1081 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 76/130 (58%), Gaps = 2/130 (1%) Query: 89 SSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHA-LVMKKGQRLSRDALRTQLDS 147 S+R+ L L + R V++V + ++R P A + G +AL+ +L + Sbjct: 99 SARIDALRALQS-DRPVVVVTSLSGLRRFLPTPANFAAARFTVSVGDEFDLEALQQKLFA 157 Query: 148 AGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVE 207 GY H V G++A RG+++D++P+ ++ P R+DFFD E+DSLR FD +QR+++ + Sbjct: 158 MGYAHQKLVAAPGDFAVRGSIIDIYPLAADYPIRIDFFDTEVDSLRYFDPATQRSIDNGQ 217 Query: 208 AINLLPAHEF 217 + +LPA +F Sbjct: 218 TVEVLPATDF 227 >UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G278_ABIDE Length = 1184 Score = 608 bits (1569), Expect = e-172, Method: Compositional matrix adjust. Identities = 306/668 (45%), Positives = 436/668 (65%), Gaps = 8/668 (1%) Query: 428 GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLE 487 G GF A+I ESD+ G + + ++ I + +ELH G V+H Sbjct: 458 GNLRRGFEYPSIKFAIISESDIFGAEKKKTNRKKKKIDGAS--IASFSELHEGDYVIHEN 515 Query: 488 HGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGG 547 HG+G Y G+ G+T +Y+ + Y+ D ++VP ++L ++ +Y+ + K+GG Sbjct: 516 HGIGVYRGIEQFTVEGVTKDYVKVDYSGDVSIFVPTTNLDVLQKYSSANGAKPKIDKIGG 575 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607 AW + + K + + ++A +L+++YA+R ++GF + D Q F + FP++ T DQ Sbjct: 576 QAWKKTKSKVRQSISEIARDLVELYAKRQQEQGFRYGKDTVWQQEFEEMFPYDETDDQLN 635 Query: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667 AI V +DM MDRLVCGDVGFGKTEVA+RAAF AV KQV +LVPTT+LA QHY Sbjct: 636 AIKDVKADMESIKIMDRLVCGDVGFGKTEVAIRAAFKAVSEGKQVVMLVPTTILAGQHYT 695 Query: 668 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727 F R N+P+ +E +SRF+SA E +I ++ G IDI+IGTHK+L +++K+KDLGLLI Sbjct: 696 TFSKRMQNFPITVEFLSRFKSAAETKKIKEKLKAGLIDIVIGTHKVLSAEIKYKDLGLLI 755 Query: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787 +DEE RFGV HKE+IK +R NVD+LTL+ATPIPRTL+M++ G+RD+S++ PP R+ ++ Sbjct: 756 IDEEQRFGVSHKEKIKKLRENVDVLTLSATPIPRTLHMSLVGIRDMSVLEEPPVDRIPIQ 815 Query: 788 TFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 847 T+V E+D ++REAI REI R GQVYY+YN V I + A +LAEL+P AR++ HGQM E Sbjct: 816 TYVLEHDDEIIREAINREIGRNGQVYYVYNRVSGIDERAAKLAELIPGARVSFAHGQMNE 875 Query: 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 RELER+M +F + +VLV TTIIETG+DI NTIII+ AD GL+QL+QLRGRVGRS Sbjct: 876 RELERIMIEFINGEIDVLVSTTIIETGLDISNVNTIIIDDADKMGLSQLYQLRGRVGRSS 935 Query: 908 HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSM 967 ++A+L+ + + A+KRL AI DLG+GF +A DLEIRGAG LLG+ QSG M Sbjct: 936 RTSFAFLMYKRDRMLKEIAEKRLAAIKEFTDLGSGFKIAMKDLEIRGAGNLLGKSQSGHM 995 Query: 968 ETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFY 1027 E +G+ LY ++L V LK G + + ++ +T V++ + +P D+I + RL Y Sbjct: 996 EAVGYDLYCKMLNEEVKRLK-GEKVAADEF---ETAVDIEASAYIPADYIRNEVARLEMY 1051 Query: 1028 KRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVI 1087 KRIA TE EL E+K ELIDR+G +P L++I+ +RQ A ++G K+E KG Sbjct: 1052 KRIAGIFTEEELSELKDELIDRYGEMPLAVDNLVNISFIRQMAHEIGTTKVEC--KGETA 1109 Query: 1088 EFAEKNHV 1095 F+ N V Sbjct: 1110 RFSIYNEV 1117 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 58/178 (32%), Positives = 89/178 (50%), Gaps = 16/178 (8%) Query: 56 HDEISQFTDQMVMNLADWETLPYDSFSPHQDI------------ISSRLSTLYQLPTMQR 103 +DEI Q M L D + + Y P +DI IS RL L +L + Sbjct: 59 YDEIRAGEIQTDMKLYDKKAVIY----PAKDIMFFAADVHGNAIISGRLEVLKRLIEDKP 114 Query: 104 GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYA 163 +I+ + + RV P S++ + + L +L GY QV G++A Sbjct: 115 STIILSLEAGLDRVLPLSYVKEKIVKLSVRDSFDITELARRLSELGYEKTSQVSGKGQFA 174 Query: 164 TRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDK 221 RG + D+FP+ E P+RL+F+ DEID++R FDV+SQR++E VE + + PA E D+ Sbjct: 175 VRGDIFDIFPLTEETPFRLEFWGDEIDTIRAFDVESQRSIENVEELLVYPATEIIIDE 232 >UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Anaerococcus RepID=C2BDI7_9FIRM Length = 1162 Score = 608 bits (1569), Expect = e-172, Method: Compositional matrix adjust. Identities = 366/1111 (32%), Positives = 614/1111 (55%), Gaps = 70/1111 (6%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSF 81 LT A L I E VV I + + + + +I+Q + + + D +T Y+ Sbjct: 32 LTDGIKAHLALAIFELLGENVVFITDNPKRSEKFLQDINQISAKAKL-YPDLDTNFYNIK 90 Query: 82 SPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDAL 141 S I+ RL L L ++ + + + ++ + +++ + + D Sbjct: 91 SIDDKKINQRLECLISLSKGEKFITVTNFAAIKNKLTTLDRFNKSFVIIDEESIIDVDDF 150 Query: 142 RTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR 201 L + Y D V E G++A RG+++D++P+ E P R++ FDDE+DS+R+FD ++QR Sbjct: 151 INSLSALNYNSTDFVEERGDFAKRGSIIDIWPINYEDPVRIELFDDEVDSIRIFDKNTQR 210 Query: 202 TLEEVEAINLLPAHEFPTD----KAAIELFRSQWRDTFEV--KRDPEHI--YQQV----S 249 T+++++ + + PA+E D K I+ + D EV +D + + Y+Q+ Sbjct: 211 TIKKIKNVEIGPANELLYDSDDYKKVIKAISNDI-DKKEVTNTKDQKLVDKYKQIISFLD 269 Query: 250 KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG------DLETSAERFQADTLARF 303 + A + + +E Y PA T+ + + E+F D + Sbjct: 270 QKMYVANKDLINA-YRTENYSSFIDYLPAGTIFIFDDISRIYESVTKDDEKFLEDLTYQM 328 Query: 304 ENRGV--DPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDL 361 EN V LL ++ + E + N+ + +T+ + K+ DL Sbjct: 329 ENGEVFGSFANYLLDSSEIYKNISE--KSIINFTSILKRTKLFSPR---------KIIDL 377 Query: 362 AVQAQQKAPLDALRKFLETF------DGPVVFSVESEGRREALGE-------LLARIK-- 406 + D + F+ T D V S+ R+E L + LLA + Sbjct: 378 KTIEAENFNKD-IENFIRTSIDLAKRDKKVYVFAGSKSRKENLLKSFIDHDFLLAGFEEN 436 Query: 407 ---IAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRR 463 I+ D+ S G Y+ VD L + ++ G+ +++ ++R+ Sbjct: 437 STDFDKTPIIISDKNSSEGYYIKD-------VD----LFVFTSKEVFGKTSSKK--NNRK 483 Query: 464 TINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPV 523 ++ +I N ++L IG VVH +G+G Y G+T +E + +++++ Y + KLY+PV Sbjct: 484 KVSSKNII-NYSDLEIGDYVVHENNGIGIYKGLTKIERNDVEKDFILIEYRGNDKLYIPV 542 Query: 524 SSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAF 583 ++L+S+Y G E L LG W +++Q+A + V ++A +L+ +YA+RA ++G AF Sbjct: 543 DQMNLVSKYIGNRGEKPKLSALGSLQWQKSKQRAKKAVDEIADDLVKLYAKRAKEKGHAF 602 Query: 584 KHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 643 D F +SFP++ T Q ++I + +DM MDRL+CGDVG+GKTEVA+RAAF Sbjct: 603 SKDTTWQVEFENSFPYDETFSQLRSIEEIKADMESENPMDRLLCGDVGYGKTEVALRAAF 662 Query: 644 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK 703 A+ + QVA LVPTT+LA QHY +RF ++P+ M+SRF + + +IL ++ GK Sbjct: 663 KAIMDGYQVAFLVPTTILANQHYHTMVERFKDFPITCAMLSRFNTKAKDDKILKDIKSGK 722 Query: 704 IDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTL 763 IDI++GTH+LL DVKF LGLLI+DEE RFGV+HKE+ K +A++D+LTL+ATPIPRTL Sbjct: 723 IDIVVGTHRLLSDDVKFNKLGLLIIDEEQRFGVKHKEKFKKFKASIDVLTLSATPIPRTL 782 Query: 764 NMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQ 823 M++SG+RDLS + PP RL V T+V E+DS ++R+AIL+EI R GQVY++YN V +I+ Sbjct: 783 QMSLSGIRDLSTLDDPPEERLPVNTYVLEFDSGIIRDAILKEINRNGQVYFVYNRVNDIE 842 Query: 824 KAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 K ++ +LVPEA I I HGQM R++E +M DF + ++L+ TTIIETG+DI NTI Sbjct: 843 KLFLKIKDLVPEASIEIVHGQMSPRQIENIMMDFIDGKIDILLATTIIETGMDIKNVNTI 902 Query: 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGF 943 +I +D GL+QL+QL+GR+GR + +YA+ K +T +KRL++I D G+G+ Sbjct: 903 VIYDSDLMGLSQLYQLKGRIGRGYRSSYAYFTYRSGKILTEIGEKRLKSIRDFSDFGSGY 962 Query: 944 ALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTE 1003 +A DLE+RGAG LLGE QSG +E +G+ LY++ L+ AV+ +G+E ++ QT Sbjct: 963 KIAMKDLELRGAGNLLGESQSGHVEAVGYDLYVKFLQEAVEK-ASGKEVKIK--LENQTF 1019 Query: 1004 VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDI 1063 +++++ + +P+ +I D + ++ Y RIA+ +++ + + ELID +G +P ++ + Sbjct: 1020 IDIKIDAYIPNSYINDSSQKIEIYNRIANINDKSDYDALVEELIDVYGDIPVIVDNIMYV 1079 Query: 1064 ARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH 1094 + ++ A + G ++ + FA K++ Sbjct: 1080 SLIKAIASENGFTEIREINNSIYLFFASKDN 1110 >UniRef50_Q11PH6 Transcription-repair coupling factor n=5 Tax=Bacteroidetes RepID=Q11PH6_CYTH3 Length = 1122 Score = 608 bits (1568), Expect = e-172, Method: Compositional matrix adjust. Identities = 378/1081 (34%), Positives = 575/1081 (53%), Gaps = 86/1081 (7%) Query: 18 LLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLP 77 L L+G+ A + A +++ V I D A +++ Q V P Sbjct: 32 FLKGLSGSMDALIAAALSKSDKKSHVFILADKDEAYFFQNDLQQLLGLPVFVFPASYKKP 91 Query: 78 YDSFSPHQDIISSRLSTLYQLPTMQR--GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 Y I R TL + Q L+ L ++V L + + + G++ Sbjct: 92 YHYEQVENANILQRAETLNYIINNQDKPSYLVTYPLALSEKVINKRSLVENTFIARIGEK 151 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 L+R+ + L S G+ D V E G+YA RG ++D+F +ELP+R++ F EI+S+R F Sbjct: 152 LNREFMEEFLQSYGFERTDFVYEAGQYAIRGGIIDIFSYANELPFRIELFGTEIESIRTF 211 Query: 196 DVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPA 255 + +SQ +++ + +++ T L + + F LPA Sbjct: 212 NPESQLSVDNIPVLSI-------TPNVQTRLLKEERESLFTF---------------LPA 249 Query: 256 GIEYWQPLF--FSEPLPPLFSYFPA--NTLLVNTGD--LETSAERFQADTLARFENRGVD 309 W + +E + FS + +T+L +TG+ L TS + D + FE + ++ Sbjct: 250 DTTLWIKDYALTTEIIEECFSKVESQFDTILSSTGNSALLTSPDALFEDKYS-FE-KSIE 307 Query: 310 PMRPL-LPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQK 368 + P S + N R++ + + P+ NL L D ++ Q Sbjct: 308 AYSIIEFGPHSY----------IPNATRIEFEAKPQPSFNKEFNL---LLEDFRLRINQG 354 Query: 369 APLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIG 428 ++ + ES + + L +L + +R +E MI Sbjct: 355 YK--------------IIIASESHQQIQRLHSILEEL----DPYIRFEE--------MII 388 Query: 429 AAEHGFVDTVRNLALICESD-LLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLE 487 GF+D RN+ +C +D + +R R + R + + ++ L L G V H + Sbjct: 389 PLREGFIDLQRNI--LCYTDHQIFDRFHRYKTKERFSKSKSITLKELRTLQPGDFVAHAD 446 Query: 488 HGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGG 547 G+ R+AG+ +E G T E + L + +D + + + +LH ISRY+G + + KLG Sbjct: 447 FGIARFAGLERIENNGHTQEAIRLVFRDDDLMVISIHALHKISRYSGKDGQPPVMSKLGS 506 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607 W + K +V+D+A EL+ +YA+R A GFA+ D SF +E TPDQ++ Sbjct: 507 GDWENKKSKVKRQVKDIAKELIQLYAKRKAAPGFAYTPDSFLQVELESSFMYEDTPDQSK 566 Query: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667 A V DM P MDRLVCGDVGFGKTE+A+RAAF AV + KQVAVLVPTT+LA QHY Sbjct: 567 ATADVKKDMESPHPMDRLVCGDVGFGKTEIAVRAAFKAVCDGKQVAVLVPTTILAMQHYK 626 Query: 668 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727 FRDR + +P +E I+RF++A + + L V EGK +ILIGT +++ DV+F+++GLLI Sbjct: 627 TFRDRLSRFPCVVEYINRFKTAGQIKETLKRVKEGKTNILIGTQRVISKDVEFQNVGLLI 686 Query: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787 +DEE +FGV+ KE+++ + N+D LTLTATPIPRTL+ ++ G RDLSIIATPP R V Sbjct: 687 IDEEQKFGVKVKEKLREFKINIDTLTLTATPIPRTLHFSLMGARDLSIIATPPPNRQPVT 746 Query: 788 TFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 847 T + +D +R+AI E+ RGGQV++++N V++I A + +LVP+AR+ HGQM Sbjct: 747 TEIHVFDEAFIRDAISFELKRGGQVFFVHNRVKDIDGMAFLIKKLVPDARVTFAHGQMEG 806 Query: 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 +LE VM F ++VLV T IIE+G+DIP ANTIII A FGL+ LHQ+RGRVGRS+ Sbjct: 807 DKLEEVMLKFVEGEYDVLVSTNIIESGLDIPNANTIIINSAHMFGLSDLHQMRGRVGRSN 866 Query: 908 HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSM 967 +A+ +LLTP A+T D++KRL + DLG GF +A DL+IRGAG +LG EQSG + Sbjct: 867 KKAFCYLLTPSVSALTGDSRKRLSVLEEFSDLGDGFKVAMRDLDIRGAGNMLGAEQSGFI 926 Query: 968 ETIGFSLYMELLENAVDALKAGR----------EPSLEDLTSQQTEVELRMPSLLPDDFI 1017 +GF +Y ++L+ A+ LK + L++L Q +E + L+PD ++ Sbjct: 927 TDLGFDMYHKILDEAIQELKETEFADLFRDELDQQRLKNLV-QDCVIETDLSILIPDTYV 985 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 +++ RLS Y I + K E EL L DRFG LP L + +LR AQ+LG K Sbjct: 986 TNISERLSLYSTIDNIKNETELTSFIQGLTDRFGPLPKEVIDLTETIKLRWLAQELGFEK 1045 Query: 1078 L 1078 L Sbjct: 1046 L 1046 >UniRef50_Q04H97 Transcription-repair coupling factor (Superfamily II helicase) n=9 Tax=Lactobacillales RepID=Q04H97_OENOB Length = 1188 Score = 605 bits (1560), Expect = e-171, Method: Compositional matrix adjust. Identities = 292/669 (43%), Positives = 449/669 (67%), Gaps = 7/669 (1%) Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 L IG+ HGF + ++ E++L + ++R +T + I + EL G VV Sbjct: 461 LQIGSLSHGFELPEEKIVVMTETELFAK--VKKRVPRHQTFSNAEKITSYTELKTGDYVV 518 Query: 485 HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544 H+ HG+GRY G+TTLEA G +Y+ + YA AK++VPV+ L+L+ +Y G A+ ++ Sbjct: 519 HVNHGIGRYEGLTTLEANGGKQDYITIAYAQKAKIFVPVTHLNLVQKYIGAADGRPKVNS 578 Query: 545 LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604 L W++ +++ KV D+A EL+ +Y++R + G+AF D ++ Q F D F + T D Sbjct: 579 LNSTDWAKTKRRVTAKVEDIADELIALYSKREGEVGYAFSVDDQRQQEFDDGFAYPETVD 638 Query: 605 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 664 Q ++I + SDM MDRL+ GDVGFGKTEVA RAAF A+++HKQVA L PTT+L+QQ Sbjct: 639 QLRSIKEIKSDMENKKPMDRLLVGDVGFGKTEVAFRAAFKAIEDHKQVAFLTPTTILSQQ 698 Query: 665 HYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 723 HY +RF+++P ++I M+SRF +A + +++ ++ ++D++IGTH+LL DV F DL Sbjct: 699 HYQTAIERFSDFPEIKIAMLSRFNTAGQNKEVIKKLKAHQLDMVIGTHRLLSKDVAFDDL 758 Query: 724 GLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 783 GLLI+DEE RFGV+HKE+IK +RANVD+LTLTATPIPRTLNMA+ G RDLS++ TPPA R Sbjct: 759 GLLIIDEEQRFGVKHKEKIKQLRANVDVLTLTATPIPRTLNMALVGARDLSVLETPPANR 818 Query: 784 LAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHG 843 ++T+V E + V+ +AI +E+ RGGQ ++L+N V++I++ + +VP+A + HG Sbjct: 819 FPIQTYVLEENWPVIADAIEKELSRGGQTFFLHNRVQDIERTVGEIQRIVPDANVGYIHG 878 Query: 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903 +M E +LE V+ DF + ++VLV TTIIETG+DIP ANT+I+E ++ FGL+QL+QLRGR+ Sbjct: 879 RMNETQLEDVLMDFLNGIYDVLVTTTIIETGVDIPNANTLIVENSERFGLSQLYQLRGRI 938 Query: 904 GRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQ 963 GRS+ AYA+ P + T DAQKRLEAI +LG+GF LA DL IRGAG+LLG++Q Sbjct: 939 GRSNRLAYAYFTYPGDRQPTEDAQKRLEAIRDFTELGSGFKLAMRDLSIRGAGDLLGKQQ 998 Query: 964 SGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTR 1023 G ++++G+ LY ++L+ AV + K G++ + + E+ L + +LLPD ++ D + + Sbjct: 999 HGFIDSVGYELYQQMLQEAV-SQKQGKD---KKVMQTNAEIVLNIEALLPDSYVNDSSQK 1054 Query: 1024 LSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 + Y+RI ++T+ + E++ +LIDRFG +P+ L +A L+ + L G++ Sbjct: 1055 VELYQRIRKSRTDEQFNEVRQDLIDRFGPIPEVVDNLFALAHLKNATDAANVINLHGDDS 1114 Query: 1084 GGVIEFAEK 1092 I F+ + Sbjct: 1115 QIRIIFSRR 1123 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 100/193 (51%), Gaps = 1/193 (0%) Query: 26 ACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNLADWETLPYDSFSPH 84 A V AE+++ ++L+ A +L ++ + D+ V + E+L ++ Sbjct: 43 AAGVFVRLKAEKNSKKILLLTDTQFRADQLTSDLEALLEDENVFEMQSEESLATETAVAS 102 Query: 85 QDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQ 144 +D SR+ L L + + +++VP++ L +R F L K ++ L + Sbjct: 103 RDADLSRVLALRALLSKENSIVVVPLSGLSRRYPDPEFFQQAVLDFKIANSYPQEQLAKK 162 Query: 145 LDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLE 204 L GY V GE++ RG ++D++P+ + P RLDFFDDE++S+R FD DSQ++L Sbjct: 163 LIEMGYNKQTLVANPGEFSVRGEIVDIYPINFDEPIRLDFFDDELESMRTFDADSQKSLN 222 Query: 205 EVEAINLLPAHEF 217 +++ ++ P +F Sbjct: 223 KIKQASVSPVSDF 235 >UniRef50_Q1RI82 Transcription-repair-coupling factor n=16 Tax=Rickettsia RepID=MFD_RICBR Length = 1120 Score = 605 bits (1559), Expect = e-171, Method: Compositional matrix adjust. Identities = 363/1124 (32%), Positives = 599/1124 (53%), Gaps = 54/1124 (4%) Query: 43 VLIAPDMQNALRLHDEISQFT-DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM 101 VL+ + + AL+L+ + F + + ++T+PYD SP+ +I+S R TL +L T Sbjct: 28 VLVTSNEEEALQLYKQALFFLPSENIYYFPSYDTIPYDHTSPNCNILSKRAETLSKLTTN 87 Query: 102 QRGVLIVP-VNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHG 160 + L++ L+ ++ P F + L + +LS + L L + ++ G Sbjct: 88 KGNKLVITHATNLLNKLPPKDFFAKYYLKLFPKMKLSANELSKFLVENSFTRNASTVDVG 147 Query: 161 EYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTD 220 E+A RG ++DL S+ YR++F D ++S++ FD+D+Q + + + PA+E + Sbjct: 148 EFAVRGEIVDLILPESK-GYRINFSWDYVESIKQFDIDTQISTRSCNELIISPANEIVLN 206 Query: 221 KAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT 280 I F+ + F V +Y+ ++ G +G E PLF+ + L Y Sbjct: 207 PETISNFKDNYLRNFGVNHTDNPLYEAITGGRKFSGYEQLLPLFY-DSYSGLTDYLNNPV 265 Query: 281 LLVNTG------DLETSAERFQADTLARFENRGV--DPMRPLLPPQSLWLRVDELFSELK 332 ++ + + E S F AR + + + P L P L+ E L+ Sbjct: 266 IIFDNLTKQAILEFEHSYNDFYK---ARLDANKLKFNSFYPTLSPSQLYFTSLEAIELLE 322 Query: 333 NWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFD-GPVVFSVES 391 + + E+ + N+ A ++K D L + ++ ++ Sbjct: 323 QENNILISYENSEQASIVENIA------AASFVEKKTIFDKLFEVIKANSRKKIIIGSSV 376 Query: 392 EGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLG 451 E + ++ + + I L+EA + I F + I S+LL Sbjct: 377 LSSFERVKSIIENYEYSYNEIEYLEEAKTNTINIAILPLNQSF--STPEYLFIAASELLE 434 Query: 452 ERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLML 511 E+V + + ++ L L G+ +VH +HG+G++ + LE G ++L + Sbjct: 435 EKVTPTNTNKKLK----NILLELDHLAEGELIVHKDHGIGQFLKLEALEIKGKLHDFLKI 490 Query: 512 TYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDI 571 YA + KLY+PV ++ +I +Y A L KLG +W + + K +++++A L+ I Sbjct: 491 LYAGNDKLYIPVENIEVIKKYGSDV---AQLDKLGSVSWQKNKAKLKNRIKEIALHLMQI 547 Query: 572 YAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVG 631 A+R A + D E+Y FC FPF T DQ AIN + D+ + MDRL+CGDVG Sbjct: 548 AAKRKLNTTAAIEFDLEEYDKFCAKFPFTETEDQLNAINDIREDLSNGMLMDRLICGDVG 607 Query: 632 FGKTEVAMRAAFLAV----DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 FGKTEVAMRAAF+ +N QVAV+VPTT+L QH+ F +RF + + I+ +S Sbjct: 608 FGKTEVAMRAAFMVAKSLNENSPQVAVVVPTTILCSQHFARFTERFKDSDLNIKQLSSVV 667 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 S+KE + +E+ GKI+I+IGTH LL KF +L LLI+DEE FGV KE +K++++ Sbjct: 668 SSKEAKIVRSELESGKINIIIGTHSLLHKVTKFCNLKLLIIDEEQHFGVGQKEFLKSLKS 727 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL 807 + +L ++ATPIPRTL M+M+G+++LSIIATPP RL V+T V +D +++R+A+L E Sbjct: 728 STHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMPFDPVIIRDALLHEHF 787 Query: 808 RGGQVYYLY---NDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNV 864 RGG+ +++ ND+E+I+K +L ++VPE + HG+M +++ +M++F+ +F++ Sbjct: 788 RGGKSFFVVPRINDIEDIEK---QLKQIVPELSYKVAHGKMSPNKIDEIMSEFYAGKFDI 844 Query: 865 LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTT 924 L+ TTIIE+GIDI ANT+II +AD GL+QL+QLRGR+GR + YA+L P K MT Sbjct: 845 LISTTIIESGIDIQDANTMIIHKADMLGLSQLYQLRGRIGRGKMRGYAYLTLPSHKKMTP 904 Query: 925 DAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVD 984 + +RLE I + LG+GF +A+HD+++RG G L+GEEQSG + +G LY E+LE + Sbjct: 905 HSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGEEQSGQIREVGTELYQEMLEEQIA 964 Query: 985 ALK----AGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELE 1040 K +G +P + + L + +PD+++ D +L Y+RI + + E+E Sbjct: 965 IFKDEPISGEQPFI-------PTINLGLSVFIPDNYVSDSVLKLGLYRRIGNLNDDLEVE 1017 Query: 1041 EIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWL 1100 + K E+IDRFG LP LLDI +++ KL I L+ + G VI+F KN + Sbjct: 1018 KFKDEMIDRFGSLPTEFNNLLDIVKIKLLCFKLNIENLDSGDNGFVIKFY-KNADMADKI 1076 Query: 1101 IGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 + + + ++ +L FI+ L KT I Q + L E Sbjct: 1077 LKFVSTYTANAKIKPDNKLVFIKKLV-GKTIITEANQLLWNLSE 1119 >UniRef50_B6AN99 Transcription-repair coupling factor n=2 Tax=Leptospirillum sp. Group II RepID=B6AN99_9BACT Length = 1154 Score = 603 bits (1556), Expect = e-171, Method: Compositional matrix adjust. Identities = 374/1044 (35%), Positives = 580/1044 (55%), Gaps = 60/1044 (5%) Query: 67 VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGH 126 + L + E LPY+ SP I + R+ L L + V++ ++++ P L Sbjct: 84 ICFLPEEEVLPYEPESPPDFIRAERIHALNLLAQGKVDVVVTTWPAVVRKTLPPRLLSEV 143 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 + G+ + R AL L G+ V QV GE+A RGA+LDL+ + P RL++ D Sbjct: 144 TWTLSAGEFIERTALADSLVRLGFLRVLQVSAPGEFAVRGAILDLYSPAHQDPVRLEWDD 203 Query: 187 DEIDSLRVFDVDSQRTLEEVEAINLLPAHEF--PTDKAAIELFRSQWRDTFEVKRDPEHI 244 D + S+R FD+++Q++L ++ + +LP E+ PT S W +K +P Sbjct: 204 DILASIRSFDINNQKSLAKLSRVEILPGSEWIPPTGNVKNGAL-SDW-----LKDNP--- 254 Query: 245 YQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFE 304 +L G+E + P + + PL Y LL+ + ++ + + Sbjct: 255 -----VTSLVPGVERFIPSIYEDAQSPL-DYGRKPVLLIEEPSIYRQKKKEWEERIREGW 308 Query: 305 NRGVDPMRPLLP-PQSLWLRVDELFSEL--KNWPRVQLK----TEHLPTKAANANLGFQK 357 D + LLP P+ +L + +L K +P + L E LP + +L Sbjct: 309 EALTDSDKVLLPSPEKAFLFEEAESPQLIEKLYPTIYLSDFSDQEDLPFSSPVESL---- 364 Query: 358 LPDLAVQ---AQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLAR--IKIAPQRI 412 L ++ A+ + L K L F + G+R+ ELL I P Sbjct: 365 ---LQIEDSWAEGLSHLIGQTKVLSVF--------RTRGQRDRFQELLTNQGIPFFPASG 413 Query: 413 MR-LDEASDRGR---YLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR--RTIN 466 ++ ++E R + ++G E GF N+ ++ E+ L R+R + R R Sbjct: 414 LQDIEEREPLNRSVVWTILGDVEKGFYIPSDNILVLSENFLF-----RKRPEPRIHRAFA 468 Query: 467 PDTLI--RNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVS 524 T I ++ L+ G+PVVHL+HG+G Y G+ + G I GE+ ++ Y + KLYVPV Sbjct: 469 TATSIYRKDRPPLNEGEPVVHLQHGIGLYRGLKEIMVGSIPGEFFVVEYRDLEKLYVPVD 528 Query: 525 SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 L+ Y G L ++GG W+R RQK +++ ++ +L+D+YA+R G +F Sbjct: 529 HADLLQPYRGPEGSTPTLDRIGGQTWNRTRQKVRKEIEKISQDLVDLYARRKTVSGHSFS 588 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 D + F +SFP++ TPDQ A AV DM P MDRL+ GDVGFGKTE+AMRAAF Sbjct: 589 SDLLLVREFENSFPYDLTPDQEDAWRAVCEDMEAPTPMDRLILGDVGFGKTEIAMRAAFK 648 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 AV + QVA+LVPTTLLA+QHY++F DRF+ +PVRI ISR S E +++ G+I Sbjct: 649 AVADGYQVALLVPTTLLAKQHYESFLDRFSGFPVRICHISRMVSQAEIRATRKKLSLGEI 708 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 DILIGT L+ + F++LGLLI+DEE RFGV KE++K+ +VD+LTL+ATPIPRTL Sbjct: 709 DILIGTTALISKETSFRNLGLLIIDEEQRFGVGQKEKLKSRYTSVDVLTLSATPIPRTLQ 768 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 M++SG+R +S I TPP R ++T + +D + EAI RE+ R GQV++++N V+ I + Sbjct: 769 MSLSGLRGISFIMTPPPGRKPIRTAILTFDRHRIHEAIDRELARDGQVFFIHNRVQTISR 828 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 LA+L PE I + HGQM + +E VM F + + +LV T I+E+G+DIP ANTII Sbjct: 829 MVHYLAKLFPEVPIGMAHGQMEDSRMEEVMEKFIQRHYRILVSTAIVESGLDIPAANTII 888 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 + RAD FG+++L+Q+RGRVGRS QAYA+ L P +T A+KRL+ + LG+G+ Sbjct: 889 VNRADMFGISELYQIRGRVGRSGQQAYAYFLIPSESGLTDTARKRLKTLQDNTSLGSGYQ 948 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 +A D+EIRGAG LLG +Q+G + +G LY+E++E +A+++ EP L ++ + Sbjct: 949 IAMRDMEIRGAGSLLGHQQTGHIALVGLDLYLEMVE---EAIQSRIEPEAVPLAREEVRI 1005 Query: 1005 ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA 1064 +L S P+D+I R+ FY+R++ AK E++ I+ E+ DRFG LP ++ L A Sbjct: 1006 DLGRESRFPEDYIEHPAQRIDFYRRLSLAKNMGEIDHIESEVSDRFGPLPRSSKGLFLAA 1065 Query: 1065 RLRQQAQKLGIRKLEGNEKGGVIE 1088 RL+ + K G ++ ++ V++ Sbjct: 1066 RLKFLSLKHGFSEVRVRDRELVVK 1089 >UniRef50_C9RNX3 Transcription-repair coupling factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RNX3_FIBSS Length = 1132 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 372/1065 (34%), Positives = 586/1065 (55%), Gaps = 60/1065 (5%) Query: 42 VVLIAPDMQNA-LRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPT 100 +++IA D ++A + + + S ++ V PY+ P + ++ RL + Sbjct: 52 ILVIAKDYRSAEVWVENLESMVGEEFVRFFPSLGLKPYEIKVPFEGVLEERLKFFRDVSH 111 Query: 101 MQRG-VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEH 159 ++ V++ P++ + ++ + ++ G +L +LR G+ V Sbjct: 112 TEKPFVVVCPLDAFLMKLPEPGEIMRQVRTLRVGDQLEPSSLRPWFLDHGFVEQPMVSGV 171 Query: 160 GEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT 219 GE++ RG ++D+ + P R++F+ DEI+S+R FD+ SQR+LE++ I P EF Sbjct: 172 GEFSIRGCIVDVNCLLYPHPIRIEFYGDEIESIRAFDIFSQRSLEQMTHIEFFPMGEFTV 231 Query: 220 DKAAIELFRSQWRDTFEVKRDPEHIY--QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFP 277 PE + ++ S +L +W + L Y P Sbjct: 232 ---------------------PESVMAGEECSVESL-----WWHRPHHQRLVASLLDYMP 265 Query: 278 ANTLLVNTGDL--ETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWP 335 +L+ L ET+++ + A A E R D + P +W ++ EL Sbjct: 266 RASLVFEELSLLSETASKMYGAFRGAYDEARVTDA--GVAAPADIWFKIGELSRLFVG-- 321 Query: 336 RVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRR 395 R L + N + + D DA+ K +E F + GR Sbjct: 322 RASLDMTRVKVDDGNWHEMHMRPQDFTSNGT-----DAVAKEIEEF-------YDKGGRV 369 Query: 396 EALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVA 455 + + L + R+ + + Y IG GF N+A + ES +L Sbjct: 370 YVMAQTLGGV----NRLREIFDGLPIEDYF-IGNLSEGFWLEDDNVAFLTESRILNRHAN 424 Query: 456 RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAN 515 + R+ + L+ + L+ G V H +HG+GRY G+ +E G + +L Y Sbjct: 425 KARKHKIAGSVTNALM--VESLNRGDLVAHEDHGIGRYLGLVRVEVNGGMVDCALLEYDG 482 Query: 516 DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR 575 +L PVS L I R + L +LG W +++ +KV +A +L+++YA+R Sbjct: 483 GDRLKFPVSDLQKIERLDRPEDIETKLDRLGSKTWENIKKRVKQKVIQIARDLVELYAKR 542 Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 EGF F D + F DSF ++ TPDQ +A + DM MDRL+CGDVGFGKT Sbjct: 543 ELVEGFGFPPDGNMQKEFEDSFEYDPTPDQLRATADIKRDMESHRPMDRLICGDVGFGKT 602 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 EVAMRAAF V ++KQVA+LVPTT+LA QHY+NF +RFA +PV+I +++R++SAKE+ +I Sbjct: 603 EVAMRAAFKCVSSNKQVAILVPTTILAAQHYENFCERFAAYPVKIALMNRYKSAKEKKEI 662 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 E+A G ++I+IGTH LL + +FKDLGLLI+DEE +FGV+ KE+++ +R VD L+++ Sbjct: 663 FKEIAAGTVNIVIGTHALLSNKSEFKDLGLLIIDEEQKFGVKQKEKLRQLRLAVDTLSMS 722 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYL 815 ATPIPR+L+++M+G+RD+S+I TPP RL V+T + + D V++ AIL E+ RGGQV+ + Sbjct: 723 ATPIPRSLHLSMTGVRDISLINTPPINRLPVETKLMQRDDEVLKNAILDELARGGQVFVV 782 Query: 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 + V+ I K E + + PEA++A+ HGQM + ELERVM+ F ++F++LV T+IIE+G+ Sbjct: 783 NDRVQTIYKLTEDIEAMAPEAKVAVAHGQMEDHELERVMDAFLSRKFDILVSTSIIESGL 842 Query: 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 D+P ANTIII A HFG++QL+Q+RGRVGRS A A+L+ P ++ ++ +RL+A+ Sbjct: 843 DVPNANTIIIMNAHHFGISQLYQMRGRVGRSSVLAKAFLVIPQRGEISQESMRRLKALEQ 902 Query: 936 LEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLE 995 DLG+G+ LA DLEIRGAG LLG+EQ G + +GF Y+ L+ AV+ L+ G +LE Sbjct: 903 FTDLGSGYQLAMRDLEIRGAGNLLGQEQHGFIAEVGFETYVRLVREAVEMLRGG---ALE 959 Query: 996 DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPD 1055 Q VE+ + + LP+D++ D TR+S Y+RIA T+ +++ I+ EL DRFG +P Sbjct: 960 --KPIQPRVEIGVDAYLPEDYVEDGLTRISLYQRIARITTQADVQNIESELQDRFGPVPT 1017 Query: 1056 PARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWL 1100 PA+ LL + L A +L I+ L + V FAE +P L Sbjct: 1018 PAKMLLLVTELGLLAGRLRIQGLALRKGVIVATFAETPSPDPRVL 1062 >UniRef50_Q255X7 Transcription-repair coupling factor-superfamily II helicase n=13 Tax=Chlamydiaceae RepID=Q255X7_CHLFF Length = 1084 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 371/1027 (36%), Positives = 549/1027 (53%), Gaps = 91/1027 (8%) Query: 86 DIISSRLSTLYQLPTMQRGVLIVP-VNTLMQRV-CPHSFLHGHALVMKKGQRLSRDALRT 143 D + R LY+L + V V + L+++ P +H H L ++ G L D + Sbjct: 92 DAVGKRDKILYELCEKKSPVFCVTTLKALLEKTRSPKDTVHQH-LDIQVGDLLDPDMMID 150 Query: 144 QLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTL 203 + GYRH + GE+A RG ++D+FP+ S+ P+R++F+ ++I S+R F+ Q + Sbjct: 151 LCKNLGYRHETLARDKGEFAYRGGIIDIFPLSSQEPFRIEFWGEKIISIRPFNPSDQLST 210 Query: 204 EEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPL 263 +V +++ PA T + E+ D F Sbjct: 211 GKVSKLSISPA----TKDSGKEVLSHCLLDYFHT-------------------------- 240 Query: 264 FFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLW-- 321 PP F + N LE TL+ NR LP Q L Sbjct: 241 ------PPAF-------IFDNLARLEDDFSEISG-TLSSLPNR-------FLPIQYLCER 279 Query: 322 -LRVDELFSELKNWPR--------VQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLD 372 L+ +F E KN+P V ++ H KA+ F P+ + + PL Sbjct: 280 ALQSPTIFFEEKNFPNAHTVKNNEVNIEVFHRDVKASRLVAPFV-YPNETIDKHENPPLG 338 Query: 373 ALRKFLETFDG--PVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAA 430 L+K E P+ +V + + ++L E A I+ + + + E S G Sbjct: 339 FLQKLQEYIPNKEPLNIAVYNT-KSKSLKEARALIETLEENSIHIYEKS--------GNL 389 Query: 431 EHGFVDTVRNLALICESDLLGERVARR-RQDSRRTINPDTLIRNLAELHIGQPVVHLEHG 489 F A I S+ ++ RR +Q + ++ + + + G+ VVHL +G Sbjct: 390 SSSFALVKERFAAISLSEFTSTKILRRQKQRNYFSVTTEEVFVPIP----GETVVHLHNG 445 Query: 490 VGRYAGMTTLEAG-GITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 548 +G++ GM I +YL+L YA+ A+LYVP +LISRY G +E+ LH L G Sbjct: 446 IGKFIGMEKKPNHLNIETDYLVLEYADKARLYVPSDQAYLISRYVGTSEKTPDLHNLNGS 505 Query: 549 AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 608 W R+R + + + A +LL + AQR+ F + E+ F + FP+E TPDQ +A Sbjct: 506 KWKRSRDLSEKSLVLYAEKLLQLEAQRSTAPSFIYPPHGEEVMKFAERFPYEETPDQLKA 565 Query: 609 INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLAQQHYD 667 I + SDM MDRL+CGD GFGKTEV MRAA AV D H+QV V+VPTT+LA QHY+ Sbjct: 566 IEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGHRQVIVMVPTTILANQHYE 625 Query: 668 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727 F R A P++I ++SRF K + +I + A+G +DILIGTHKL+ +++FK+ GLLI Sbjct: 626 TFSQRMAGLPIKIAVLSRFSEGKAKKKIFEDTAKGDVDILIGTHKLINKNLEFKNPGLLI 685 Query: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787 +DEE RFGV+ K+ +K VD LT++ATPIPRTL M++SG RDLS+I PP RL V Sbjct: 686 IDEEQRFGVKVKDFLKERYPMVDCLTVSATPIPRTLYMSLSGARDLSLITMPPLDRLPVS 745 Query: 788 TFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 847 TF+ E++ + A+ E+LRGGQ Y ++N +E+I + + LVPEARIA+ HGQM Sbjct: 746 TFILEHNDETLSAALRHELLRGGQAYVIHNRIESIFRLGNTIRTLVPEARIAVAHGQMSS 805 Query: 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 EL + F Q NVLV T +IE GIDIP ANTI++++AD FG+A L+Q++GRVGR + Sbjct: 806 DELASIFQKFKDQEINVLVATALIENGIDIPNANTILVDQADKFGMADLYQMKGRVGRWN 865 Query: 908 HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSM 967 +AY + L PH ++ A KRLEA+ ++ G G +A HDLEIRGAG +LG +QSG + Sbjct: 866 RKAYCYFLVPHLDRLSVPAAKRLEALNK-QEYGGGMKIALHDLEIRGAGNILGTDQSGHI 924 Query: 968 ETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFY 1027 IGF+LY +LL+ V ALK P+ L + ++E S +PD +I + R+ FY Sbjct: 925 SAIGFNLYCKLLKKTVAALKNNTSPA---LFNDDVKIEFPYKSRIPDTYIDLASMRIEFY 981 Query: 1028 KRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVI 1087 ++I A+ +L+ IK E+ DRFG LPD L +A+LR A K I ++G G Sbjct: 982 QKIGGAEDAEQLDLIKEEMRDRFGPLPDEVLWLFALAQLRLFALKHNISSIKGT---GNA 1038 Query: 1088 EFAEKNH 1094 + ++NH Sbjct: 1039 LYIQQNH 1045 >UniRef50_Q0B0S4 Transcription-repair coupling factor-superfamily II helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0S4_SYNWW Length = 1073 Score = 601 bits (1550), Expect = e-170, Method: Compositional matrix adjust. Identities = 322/735 (43%), Positives = 479/735 (65%), Gaps = 14/735 (1%) Query: 358 LPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLA-RIKIAPQRIMR-L 415 +P +AV + Q + F ++ +F+ ++ + + L +LA + ++A ++I + L Sbjct: 305 IPQVAVTSLQHISQKEMEPFYRQYE--TLFARINDWQGKGLKVILAIKSRVAREQIQQDL 362 Query: 416 DEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLA 475 E G + E GF + +AL+ ESD+ G++ + + + ++ L Sbjct: 363 LEQGITGISYLDKIVEKGFSSSTLQVALLSESDIWGKKTDPGSRKKHKHKGEERIL--LE 420 Query: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGG 535 +L +G VVH +G+G + G++ +E GIT EY++L YA +LY+P+ L L+ +Y Sbjct: 421 DLKLGDYVVHESYGIGIFRGVSQVENSGITREYILLEYAGTDRLYLPLEKLDLLFKYTSS 480 Query: 536 AEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCD 595 ++ L+KLGG AW R R+K A+ ++D+A +LL +YA R ++EG+AF D F D Sbjct: 481 GDKEPRLNKLGGSAWERTRKKVAQSIQDLAEDLLQLYAHRESREGYAFSPDTPWQSQFED 540 Query: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655 FPF TPDQ +AIN V DM MDRLVCGDVG+GKTEV +RAAF A+ + KQVA+L Sbjct: 541 EFPFRETPDQLKAINEVKKDMETRRPMDRLVCGDVGYGKTEVFLRAAFKAIMDGKQVAIL 600 Query: 656 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 715 VPTT+LA+QH+ F +RFA +P IE++SRFRS EQ +I+ ++ +G +DI+I TH+LL Sbjct: 601 VPTTVLAEQHFQTFTERFAAYPAVIEVLSRFRSNSEQKRIVEDLQKGVVDIVIATHRLLS 660 Query: 716 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 775 DVKFKDLGLL++DEEHRFGV KE+IKA++ VD+++L+ATPIPR+L+MA++G+RDLS+ Sbjct: 661 RDVKFKDLGLLVIDEEHRFGVAQKEKIKALKELVDVISLSATPIPRSLHMALTGLRDLSV 720 Query: 776 IATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE 835 I TPP R + T+V EY+ ++ EA+++EI R GQV++++N +E+I + E+L EL P Sbjct: 721 IETPPPERYPITTYVLEYNEEIIVEAVMKEIERQGQVFFVHNRIEDIYRVKEQLDELFPG 780 Query: 836 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 895 +IA+GHG+M+E EL RVM DF + ++ + +CTTIIE+G+D+P NTII++ AD GLAQ Sbjct: 781 IKIAVGHGRMKEDELSRVMMDFVNGKYQLFLCTTIIESGLDMPNVNTIIVDEADKMGLAQ 840 Query: 896 LHQLRGRVGRSHHQAYAWLLTPHPKAMTTDA-QKRLEAIASLEDLGAGFALATHDLEIRG 954 L+QLRGRVGRSH AYA+ LT P + ++A QKRL AI +LG+G +A DLEIRG Sbjct: 841 LYQLRGRVGRSHRLAYAY-LTYRPDWVISEASQKRLNAIREFNELGSGMKIALRDLEIRG 899 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPD 1014 AG +LG EQ G ++ +GF LY LLE LK E E+ Q ++++ +P+ Sbjct: 900 AGNILGAEQHGYIQAVGFDLYCRLLEQETGRLKG--EQVQENRVDPQLDIDI--DYYIPE 955 Query: 1015 DFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 +IPD +++ Y+R+ A ++ E+EEI+ E+ DRFG LP L IA LR A+ Sbjct: 956 SYIPDSGSKMRIYRRLLLAGSQEEVEEIREEIRDRFGPLPQAVENFLQIAALRLLARDKE 1015 Query: 1075 IRKLEGNEKGGVIEF 1089 I+ L KG IE Sbjct: 1016 IKSL--RRKGRQIEI 1028 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 60/243 (24%), Positives = 121/243 (49%), Gaps = 14/243 (5%) Query: 18 LLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD--QMVMNLADWET 75 LL L+G+A A +++EI ++ ++ + P+ + A L ++ F + ++ M LA Sbjct: 22 LLTGLSGSAKAFMLSEILKKQNRKLLCLLPEEEKAYDLARDLEAFIEPGRLFMFLAR--- 78 Query: 76 LPYDSFSPHQDIISSRLSTLYQLPTM-----QRGVLIVPVNTLMQRVCPHSFLHGHALVM 130 D + +++ + + + L Q ++I + + + S + +L++ Sbjct: 79 ---DFYFAKENLSTLEVGRILSLQHCLDHPRQSAIIIATPGSFIYPLPAPSAMRESSLLL 135 Query: 131 KKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEID 190 ++G+ + + +L GYR VD V GE+A RG ++D+FP+G + P R++FF + I+ Sbjct: 136 QQGKEKEQREILKKLVGGGYRRVDTVSRQGEFAVRGGIIDIFPLGHKEPCRVEFFGELIE 195 Query: 191 SLRVFDVDSQRTLEEVEA-INLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVS 249 S+ FD++SQR L + E + +LPA E D+ +F + +P Y+Q Sbjct: 196 SIHRFDINSQRRLGKDEGQVKILPADELYGDELTCSIFSYLDESSSVFFDEPREFYKQFK 255 Query: 250 KGT 252 + Sbjct: 256 RSV 258 >UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S0H3_FINM2 Length = 1168 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 288/664 (43%), Positives = 446/664 (67%), Gaps = 9/664 (1%) Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 I N ++L+I VVH HG+G+Y G+ ++ GI +Y+++ Y + +L +P ++L+ Sbjct: 496 IVNYSDLNIDDYVVHENHGIGQYKGIEKIDVNGIQKDYIVIQYKANDRLMIPTDQMNLVQ 555 Query: 531 RYAGGAEENAP-LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQ 589 +Y GG P L+KL G+ W++A+QKA + V ++A +L+++Y++RA +G+ F D E Sbjct: 556 KYIGGGNVKKPSLNKLSGNDWAKAKQKAKKSVDEMADDLVELYSKRAKLKGYQFSQDTEW 615 Query: 590 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH 649 + F DSFP+E T Q ++I + +DM MDRL+CGDVG+GKTEVA+RA F A+ + Sbjct: 616 QREFEDSFPYEETDSQVRSIEEIKADMESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDG 675 Query: 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIG 709 KQVA LVPTT+LAQQH++ ++RF ++P+R+EM+SRF S Q QI+ +V G +D+L+G Sbjct: 676 KQVAFLVPTTILAQQHFNTIKERFRDYPIRVEMMSRFVSPARQKQIMKDVQRGLVDLLVG 735 Query: 710 THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSG 769 TH++L ++KFKDLGLL++DEE RFGVRHKE++K+MR NVD+LTL+ATPIPRTL M ++G Sbjct: 736 THRILSKNLKFKDLGLLVIDEEQRFGVRHKEKLKSMRENVDVLTLSATPIPRTLQMGLTG 795 Query: 770 MRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 +RD+S++ PP R + T+V EY+ ++R+AI+RE+ RGGQ+Y++YN +E+I + +L Sbjct: 796 IRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIEDIDQMEFKL 855 Query: 830 AELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 ELVPE IAI HG+M E+ELE VM DF +++L+CTTIIETG+DI NT+II AD Sbjct: 856 KELVPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNAD 915 Query: 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHD 949 GL+QL+QL+GR+GRS ++A+ K++T ++KRL AI + G+GF +A D Sbjct: 916 KMGLSQLYQLKGRIGRSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRD 975 Query: 950 LEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV--ELR 1007 LE+RGAG LLGE Q G + IG+ LY++LLE AV RE E ++ + V E++ Sbjct: 976 LELRGAGNLLGESQHGHIAKIGYDLYVKLLEQAV------REAKGETISENKNTVIIEIK 1029 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 + +P+D+I + T++ YK+IAS + E++ EI ELIDRFG +P P ++D++ ++ Sbjct: 1030 VNGYIPEDYISENETKIDIYKKIASIQDEDDYSEIIDELIDRFGDVPKPIVNIMDVSIIK 1089 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE 1127 +L I ++ + ++F+ + ++ L L + + R D + K I + Sbjct: 1090 AFCARLSIESIKEIKGELFLQFSSPDKISLEKLKYLTENYKKEMRFDLSEKPKIILGFED 1149 Query: 1128 RKTR 1131 + R Sbjct: 1150 KNLR 1153 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 47/192 (24%), Positives = 102/192 (53%) Query: 26 ACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQ 85 A A+ V ++ P+V++ D A L + ++ + + E Y++ S Sbjct: 37 AFASFVYATSKNINKPLVVVVEDNMRARNLTEYLNDIEENICEFFPSRELNFYNAKSLDD 96 Query: 86 DIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 + R++ L++L ++ +++ + L +++ S +A +K ++ + L+ +L Sbjct: 97 NAEDQRVNVLFKLLNNEKFIIVTTFDALTKKITKKSVAKKYAFTIKDTDLINLEELQEKL 156 Query: 146 DSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEE 205 + Y VD + G++A RG ++D+FP+ S P R++ FDDEIDS+R F+V +QR++E+ Sbjct: 157 RALKYERVDTIESKGQFAIRGGIVDIFPVHSRFPVRIELFDDEIDSMRFFEVSTQRSIED 216 Query: 206 VEAINLLPAHEF 217 + ++++ E Sbjct: 217 CKFVDIISCSEL 228 >UniRef50_D1N873 Transcription-repair coupling factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N873_9BACT Length = 1098 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 306/609 (50%), Positives = 408/609 (66%), Gaps = 8/609 (1%) Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 +LA+L G VHL+HG+G + G TLE+ GI E L++ Y + LYVP+ H +SRY Sbjct: 435 SLADLDEGDYAVHLDHGIGIFRGFKTLESRGIGREVLVMEYKDGQLLYVPLLQAHKVSRY 494 Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 G A + LH LGG W+R ++ A V AA++L + A R + G + D + + Sbjct: 495 LGAAG-HVTLHSLGGARWNRDKESARRSVHSYAADMLRLQAMRQSAPGIVYPPDTAETKA 553 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F +FPF TPDQ+++ + DM P MDRL+CGDVG+GKTE+AMRAAF AV QV Sbjct: 554 FLRAFPFRDTPDQSRSTAEIRRDMESPRPMDRLLCGDVGYGKTEIAMRAAFKAVSAGYQV 613 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 A+L PTT+LAQQHY +FR+RFA +P I+++SRFR+A EQ I+ +V G IDILIGTH+ Sbjct: 614 AILAPTTVLAQQHYYSFRERFAAYPYTIDVLSRFRTAAEQNAIMQKVRSGGIDILIGTHR 673 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 L D+KF++LGL+++DEE RFGV+HKER++ RA VD+LT++ATPIPRTL +AM+G RD Sbjct: 674 LCNPDLKFRNLGLVVIDEEQRFGVKHKERLRRFRAEVDVLTMSATPIPRTLYLAMAGARD 733 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 832 LS + T P +RL VKT + D M V +AI E+ RGGQVYYLYN V I++ A++L L Sbjct: 734 LSTLMTAPKQRLPVKTVIAPEDEMQVAQAIRAELARGGQVYYLYNRVRTIEEKADKLRAL 793 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 VPEA+ A+ HGQM E ELE +M F + + LVC+TIIE+G+D+P ANTIIIERAD FG Sbjct: 794 VPEAKFAVAHGQMNEHELEAIMTSFLEGKIDCLVCSTIIESGLDVPNANTIIIERADRFG 853 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 LA+L+QLRGRVGR HQAYA++L P + ++TDA+KRL AI +LGAGF LA HDLEI Sbjct: 854 LAELYQLRGRVGRWTHQAYAYMLLPKSQLVSTDARKRLSAIRRCSNLGAGFQLALHDLEI 913 Query: 953 RGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRM---P 1009 RG+G LLG EQSG + +IGF LY +LL+ V L+ + L ++ V + P Sbjct: 914 RGSGNLLGSEQSGHLNSIGFDLYCQLLKQEVSRLRGEQVEFLPEVEVAIDFVSFTLNAPP 973 Query: 1010 SLLPDDFIPDV----NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIAR 1065 +LP F PD RL Y+R+ + +E ELE+ EL DR+G LP A LL + R Sbjct: 974 GVLPAAFPPDYIGGERLRLDAYRRLGALASEAELEDFANELRDRYGKLPKCAENLLAVIR 1033 Query: 1066 LRQQAQKLG 1074 LR + G Sbjct: 1034 LRLLVARAG 1042 Score = 53.5 bits (127), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 42/80 (52%) Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 L +K G L L +L Y + GE+A RG ++D+F + P R++FF D Sbjct: 140 LTLKAGMELPMAELLEKLVRLDYDDEYEATVSGEFARRGGIIDIFSPAHDFPCRVEFFGD 199 Query: 188 EIDSLRVFDVDSQRTLEEVE 207 IDSLR F ++QR+ VE Sbjct: 200 TIDSLRSFAPETQRSTGAVE 219 >UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Atopobium RepID=C8W8X2_ATOPD Length = 1147 Score = 598 bits (1541), Expect = e-169, Method: Compositional matrix adjust. Identities = 382/1092 (34%), Positives = 582/1092 (53%), Gaps = 86/1092 (7%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF-TDQMVMNLADWETLPYDS 80 L+ +A ++A + ++ P +L+ A R ++ + + V+ + + P+ Sbjct: 33 LSQSARPLMLAALWSQNPRPCLLVVAGEDAADRTARSLAAWLGNDAVLRYPNRKDYPWSD 92 Query: 81 FSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDA 140 +P II +R + +L ++ +++ + LM+RV P + G + + Sbjct: 93 ATPDDAIIGARCRAIAKLSAGEKVIVVASAHALMRRVPPVGSGYFLPATFTVGDDVPFED 152 Query: 141 LRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ 200 + + L GY +V G + G +D+FP + P R++FF DEID +R + Sbjct: 153 VASLLVGMGYADTGEVDAPGTFHIHGDTVDIFPAQATSPVRIEFFGDEIDRIRRMVAATG 212 Query: 201 RTLEEVEAINLLPAHEFPTDKAAI----ELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAG 256 +T+ ++ + + PA E K AI E ++ ++ + D E I +G Sbjct: 213 QTIGAIDEVTVAPARELAFTKEAIRRAEEALYTRAQENSAIAADLELI----QRGAQAPA 268 Query: 257 IEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLP 316 +E + P+ + PL + + TL+V L Sbjct: 269 LERYLPVLYGGTASPL-EHISSETLVV------------------------------LAE 297 Query: 317 PQSLWLRVDELFSELKN---WPRVQLKTEHLPTKA----ANANLGFQKL--------PDL 361 P+SL+ F E+ + +V+L + KA + L F L +L Sbjct: 298 PRSLFDDCQRAFDEISSSAAASKVKLDGLYTDPKAMDFGSQQRLSFSSLLRTGAAVTSEL 357 Query: 362 AVQAQQKAPLDA-----LRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIM--R 414 +V A D +R+ ++ D VVF+V RE L L + I + + Sbjct: 358 SVVQPSIAGSDTKLLGRVRQLVQDRDA-VVFAVPDRAAREHLKLLFSDESIPFEESLGTS 416 Query: 415 LDEASD---------RGRYLMIGA-AEHGFVDTVRNLALICESDLLGERVARRRQDSRRT 464 L+ D RGR A G + NL+++ SDL R AR ++ S+R Sbjct: 417 LENEPDQNGVYVPLKRGRVTFTDAPVPAGIIIPTANLSVLSVSDLTA-RSARNKKRSKR- 474 Query: 465 INPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVS 524 I+P T+ G VVH HG+ + + E G +Y +L YAND KLYVP+ Sbjct: 475 IDPTTVT---FPFKPGDYVVHATHGIAHFTAIVRQEVAGRERDYFLLEYANDDKLYVPLE 531 Query: 525 SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 + I+RY G N L +L WSRA KA + + +A +L+D+Y +RA+ G+AF Sbjct: 532 QVDRITRYVGPDGNNPRLTRLNTADWSRATNKARKSAKKLAFDLVDLYTRRASVPGYAFS 591 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 D + SFP++ TPDQ A+ + DM MDRL+CGDVGFGKTEVA+RAAF Sbjct: 592 LDTPAQEEMESSFPYQLTPDQESAVADIKLDMEARKPMDRLLCGDVGFGKTEVALRAAFK 651 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 A + +QV +L PTT+LAQQHY+ F RFA + +++ ++SRF + +Q + L A+G I Sbjct: 652 ACQDARQVMILCPTTILAQQHYETFFSRFAPFDLKVSVLSRFVTPAQQRKALEGFADGTI 711 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 D+L+GTH+LL +DV DLGL+I+DEE RFGV+HKE++K MR VD+LTL+ATPIPRT+ Sbjct: 712 DVLVGTHRLLSADVNPHDLGLVIIDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQ 771 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 MAMSG+RD+S+I TPP R V+ V EY+ +V AI E+ R GQVYY+ N V I + Sbjct: 772 MAMSGVRDMSLILTPPPGRKPVQVTVGEYNPDLVSAAIRSELEREGQVYYVSNRVTTIDE 831 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 A R+ E PEAR+ + HGQM RE+E VM F +VLV TTIIE+GID NT+I Sbjct: 832 AVARVEEAAPEARVGVAHGQMSAREVENVMLAFQEHEIDVLVATTIIESGIDNSHTNTLI 891 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 IE + GLAQL+QL+GRVGR QAYA+ + P +T +A +RL AI +DLG+G Sbjct: 892 IEDSQRLGLAQLYQLKGRVGRGRQQAYAYFMFPAELPLTEEATERLTAINEFQDLGSGMR 951 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 +A DLEIRGAG L+G EQ G++ ++GF L+ ++L AV A G LE QTEV Sbjct: 952 IAMRDLEIRGAGSLMGAEQHGNLSSVGFDLFTQMLGEAV-AEARGESAELE-----QTEV 1005 Query: 1005 ELRMPS--LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLD 1062 + +P+ L +D++P+V+ R+ Y+R+A+A ++++ ++ + + FG LP + L D Sbjct: 1006 TINLPADFFLDEDYLPEVDRRVLVYRRLAAATELSDIDALQQDTENSFGALPLAGKNLFD 1065 Query: 1063 IARLRQQAQKLG 1074 AR+R +AQ+LG Sbjct: 1066 RARVRIRAQRLG 1077 >UniRef50_A9NE83 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NE83_ACHLI Length = 1143 Score = 597 bits (1540), Expect = e-169, Method: Compositional matrix adjust. Identities = 381/1143 (33%), Positives = 609/1143 (53%), Gaps = 67/1143 (5%) Query: 20 GELTGAACATLVAEIAERH---AGPVVLIAPDMQNALRLHDEISQFTDQ-------MVMN 69 G+ G + + L ++ R+ + ++ P++ A + +D +S D+ M Sbjct: 21 GDFKGVSHSYLQTMLSLRYDISNKNIFVVLPNLYEAQKYYDTLSSIIDESKVLFYPMDQT 80 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVN--TLMQRVCPHSFLHGHA 127 L L F + RL TL +L +I+ L +++ P + Sbjct: 81 LTSMMALGSPEFK------NERLFTLRKLLQADDKYIIITTQEGILHRQLKPEDY-ERSV 133 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 + Q L +L GY+ V GE++ RG++LD++ + PYRLDFF D Sbjct: 134 KKISVNQDYDLTDLTKKLIYDGYQFNYTVERPGEFSIRGSILDIYTHDYKDPYRLDFFGD 193 Query: 188 EIDSLRVFDVDSQRTLEEVEAINLLPAHE-FPTDK---AAIEL-------FRSQWRDTFE 236 ++S++ FDV +Q+++ + +I++ P +E F TD+ A+E F+ ++ + Sbjct: 194 TLESIKTFDVQTQKSMNHITSIDIAPLNELFYTDELKEQALEKISKYFSGFKLSEKEDKK 253 Query: 237 VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF-PANTLLVNTGDLETSAERF 295 ++ D HI ++ +L IE FF++ + + + P + +LV++ +E + E Sbjct: 254 LETDLMHIEERKRMDSLSMYIE-----FFNDEVTTILDFSNPYDLILVDSYKMELNEETT 308 Query: 296 QADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGF 355 D L + + L EL + + + K + +LG Sbjct: 309 YQDLLTY--------SHTMQGEAFIGLNFKVKLKELLKKNHLSFQIYSVSDKPS-TDLGV 359 Query: 356 QKLPDLAVQAQQKAPLDALRKFLETFDG-PVVFSVESEGRREALGELLARIKIAPQRIMR 414 + L+ L F+ ++G ++ S ++ E + E L KI+ Sbjct: 360 LDVDPFV------GHLEQLILFINEYNGFNILISTKTMVSFERIKEHLTNHKIS----YS 409 Query: 415 LDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNL 474 +++ D L+ F+D ++ E +L + + + R IN IR++ Sbjct: 410 VNQFKDAMVVLVEEDLPGSFIDLNHKFIILTEDTILDTK-KKAKVRYRSVINQAVKIRDI 468 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG 534 +EL G VVH + G+G+Y G+ T+ G +YL + Y D LYVP + L+ +Y Sbjct: 469 SELQNGDYVVHYDFGIGQYIGLKTMTLSGDKRDYLHIVYDKDEALYVPTDQIDLVLKYKS 528 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 + L KL WS+ + + +K++D++ LL++YA+R EG+ F + F Sbjct: 529 YDQVKPKLSKLNAKQWSKTKAQVKQKIKDLSDRLLNLYAKRHQAEGYQFSPRTDMLTSFE 588 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 F ++ T DQ +AI+AV DM MDRL+ GDVG+GKTEVA+RAAF AV + KQVA Sbjct: 589 KDFNYDETIDQQKAIDAVFEDMESSKPMDRLIAGDVGYGKTEVALRAAFKAVVDAKQVAY 648 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 LVPTT+LA+QHY F+DRF + + ++SR+ S +EQ ++L ++A+G ID++IGTH+LL Sbjct: 649 LVPTTVLARQHYLTFKDRFEKYGGSVALLSRYVSKREQKEVLEKIAKGYIDVVIGTHRLL 708 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 D+ FKDLGL I+DEE RFGV+HKE+IK ++ NVD LTL+ATPIPRTL MAM G++DLS Sbjct: 709 SDDIVFKDLGLFIIDEEQRFGVQHKEKIKEIKVNVDTLTLSATPIPRTLQMAMYGLKDLS 768 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 +I TPP R V+T+V E +++EAI RE+ RGGQV+YL+N+ E ++ +L +LVP Sbjct: 769 MIDTPPLNRYPVQTYVVERQPALIKEAIDRELSRGGQVFYLFNNTERMEAQVLKLQQLVP 828 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 ARI HG+M + +E ++ F + F++LV TTIIETG+DIP NT+II ADH GLA Sbjct: 829 NARITYAHGKMTKNRIEDTLSRFVEKEFDILVSTTIIETGVDIPNTNTLIIHDADHLGLA 888 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QL+QLRGRVGRS AYA+L+ K + +A+KRL I DLG+GF +A DL IRG Sbjct: 889 QLYQLRGRVGRSDRIAYAYLMFDGYKDVNDEAKKRLSVIEDFTDLGSGFKIALRDLGIRG 948 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPD 1014 AG++LGEEQSG ++++G LYM+LL+ + KA P + T ++ +P Sbjct: 949 AGDILGEEQSGFIDSVGMDLYMKLLDEVMTG-KAYESPKTD------TVDQVFSKRHIPP 1001 Query: 1015 DFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 +I R+ +KRIAS +LE++K EL+DRFG + T + ++ ++G Sbjct: 1002 TYINHDPVRIEIHKRIASLNKMQDLEDLKQELLDRFGPIDIDLMTYMYEKLYKKLGHQVG 1061 Query: 1075 IRKL--EGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRI 1132 I K E + VI + ++ L+ + K + RL G +R ++S + Sbjct: 1062 IEKTVHEKDFVKMVISLEKSELIDGMRLLYVASKSKMNIRL-GQSRGHVEINMSTKHETK 1120 Query: 1133 EWV 1135 W+ Sbjct: 1121 HWL 1123 >UniRef50_Q2GHL2 Transcription-repair coupling factor n=5 Tax=canis group RepID=Q2GHL2_EHRCR Length = 1134 Score = 597 bits (1540), Expect = e-169, Method: Compositional matrix adjust. Identities = 341/1080 (31%), Positives = 583/1080 (53%), Gaps = 55/1080 (5%) Query: 73 WETLPYDSFSPHQDIISSRLSTLYQLPTMQRG---VLIVPVNTLMQRVCPHSFLHGHALV 129 W ++PY SPH +++ R+ TLY L T ++I +N + Q+V + + L Sbjct: 63 WNSIPYKKNSPHNSVMAERIKTLYSLITRHNDNPYIIISTINAITQKVLHQNIILQSVLK 122 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 + Q ++++ + L + GY V + GE+AT ++D+FP + P R+ ++ I Sbjct: 123 ITSLQNITKNHIEDYLTNHGYSQYSIVQDIGEFATYNNIIDIFPTTYKNPIRIHLNNNLI 182 Query: 190 DSLRVFD-----VDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHI 244 S+ F+ +D+ +L EV + P E K I++F ++ +++ Sbjct: 183 QSIHYFNRQTQLIDNNSSLNEVV---IYPTSEIIKQKKNIDIFSKTYKTK---PNQDQNL 236 Query: 245 YQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFE 304 + G G E + PLF+ E L +F+Y NT L+ L + + + Sbjct: 237 LNTIISGKKHIGEENFLPLFYKEELQNIFNYISQNTTLIFNDKLINEIKEYNNQIYLNYR 296 Query: 305 NRGVDPMRPLLPPQSLWLRVDE-----------LFSELKNWPRVQLKTE-HLPTKAANAN 352 ++ + +PP L++ +E +FS+ N T+ ++ T + N Sbjct: 297 SQ----LSYQVPPPQLYVDSEEFKIITKQFHKTIFSQSDNTSNNSAYTDRNIHTSSFNIT 352 Query: 353 LGFQKLPDLA--VQAQQKAPLDALRKFLET--FDGPVVFSVESEGRREALGELLARIKIA 408 Q +P+ VQ +Q + L ++++T ++ + S G E + L + I Sbjct: 353 EKIQNVPNFKTLVQNKQIDIFEILTQYIKTTCHTKKLIIACYSTGSLEYIQNRLRTLNIK 412 Query: 409 PQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPD 468 +I E + I H F+ + +I E DLL +Q++ N Sbjct: 413 LCKIENYQEICSSYN-IAILPIYHSFIS--KYTIVIAEHDLL------YKQETTNKSNIS 463 Query: 469 TLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHL 528 +I N L IG V+H ++G+G+ + T + +++ + Y N+ KL++PV +++L Sbjct: 464 NIISNDTNLDIGDIVIHKDYGIGKIVALETTKVFDSYHDFIKIEYYNNDKLFLPVENINL 523 Query: 529 ISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDRE 588 IS+Y G N L KLG +W + + K ++ +A ELL I A R G +F D E Sbjct: 524 ISKY-GQQNVNVTLDKLGSTSWQQRKTKIKNHIKKIAKELLTIEAARRLSTGKSFFPD-E 581 Query: 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 Y+ FC+ F + T DQ QAI + D+ M+RL+CGDVGFGKTE+A+RAAFL Sbjct: 582 NYKHFCNEFSYTETEDQLQAIKDMEHDLSSGKIMNRLICGDVGFGKTEIALRAAFLVASQ 641 Query: 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 + QVA++VPTTLL +QH+ F +RF +P ++I+ +S+ + E + ++ G++ I+ Sbjct: 642 NYQVAIIVPTTLLCRQHFIVFTERFKKFPNIKIKQLSKIVARSEIKKTKESLSCGQVHII 701 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 IGTH +L DV F +L LLI+DEE +FGV+ KE +K ++ NV +++L+ATPIPRTL M++ Sbjct: 702 IGTHAILAQDVTFANLSLLIIDEEQQFGVKQKELLKKIKTNVHVISLSATPIPRTLYMSL 761 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 G++DLS+I TPP RLAV T+ Y+ ++++AI+RE RGG+V+Y+ + NI+ ++ Sbjct: 762 CGIKDLSLIKTPPKNRLAVTTYTTYYEETIIKDAIIREHNRGGRVFYVCPQISNIKSISD 821 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 ++ +LVPE ++ HGQ+ +L+ +MNDF +F +L+ T+IIE G+DIP ANTIII Sbjct: 822 KIRKLVPEIKMNTAHGQLSPTQLDTIMNDFFDGKFTILLTTSIIECGLDIPFANTIIIHN 881 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 AD FGLAQL+QL+GRVGRS + +A+ + + T + +LE I S++ + +GF L+ Sbjct: 882 ADMFGLAQLYQLKGRVGRSSTKGFAYFIL--SEKATNKSAIKLEIIQSIDSINSGFNLSL 939 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR 1007 HD++IRG G L+GEEQSG+++ IG LY ++LE ++ P +DL + + Sbjct: 940 HDMDIRGFGNLVGEEQSGNIKDIGIELYQQMLEEELNIY--SEYP--KDL--DHINININ 993 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 + +P+ +I D+ R+ YK+I S KT+ +++ +EL ++FG LP+ LL+ ++ Sbjct: 994 VNIRIPEHYIQDIGLRMRVYKKIGSLKTKEDIDNYYIELTNKFGKLPNEVENLLNTIYIK 1053 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE 1127 Q +GI ++E K ++ + N ++ P +++ + L I + S Sbjct: 1054 QLCANIGIYEVEQ-IKNSILLKIDSNTTLKQKILNYFINNPLTFKIQNNSILMLINNSSN 1112 >UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cyanobacteria RepID=MFD_SYNY3 Length = 1199 Score = 597 bits (1540), Expect = e-169, Method: Compositional matrix adjust. Identities = 309/692 (44%), Positives = 446/692 (64%), Gaps = 29/692 (4%) Query: 428 GAAE-HGFVDTVRNLALICESDLLG-------ERVARRRQDSRRTINPDTLIRNLAELHI 479 G AE GF+ L L+ + +L G E V +RR+ + + ++ + +L Sbjct: 477 GLAELEGFILPTFRLVLVTDRELFGQHALATPEYVRKRRRATSKQVD-------INKLSP 529 Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G VVH HG+G++ + L EYLM+ YA D L VP SL +SR+ Sbjct: 530 GDYVVHKSHGIGKFLKLDALA----NREYLMIQYA-DGILRVPADSLDSLSRFRHTGTRP 584 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599 LHK+GG W + K + V+ +A +LL++YA+RA + G+A+ D Q DSFP+ Sbjct: 585 PELHKMGGKVWEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAYPPDSPWQQELEDSFPY 644 Query: 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV-DNHKQVAVLVPT 658 + TPDQ +A+ V D+ MDRLVCGDVGFGKTEVA+RA F AV +KQVA+L PT Sbjct: 645 QPTPDQLKAVQDVKRDLEGDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGNKQVALLAPT 704 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 T+L QQHY ++RFA +P+ I +++RFR+A E+ +ILA++ G++DI++GT ++L + V Sbjct: 705 TVLTQQHYHTLKERFAPYPITIGLLNRFRTASEKKEILAKLKSGELDIVVGTQQVLGTSV 764 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 KFKDLGLL++DEE RFGV KE+IK ++ VD+LTLTATPIPRTL M++SG+R++S+I T Sbjct: 765 KFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIPRTLYMSLSGIREMSLITT 824 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 PP R +KT + Y+ V+R AI E+ RGGQV+Y+ +E I++ +L ++VP ARI Sbjct: 825 PPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIEGIEELGGQLRQMVPSARI 884 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 AIGHGQM E ELE M F+ ++LVCTTIIE G+DIP NTII+E A FGLAQL+Q Sbjct: 885 AIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRVNTIIVEDAQKFGLAQLYQ 944 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 LRGRVGRS QA+AWLL P+ K +T A+ RL A+ LG+G+ LAT D+EIRG G L Sbjct: 945 LRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLGSGYQLATRDMEIRGVGNL 1004 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIP 1018 LG EQSG ME IG+ YME+L++A+ ++ P +ED T+++L + + +P D+IP Sbjct: 1005 LGAEQSGQMEAIGYEFYMEMLQDAIKEIQGQEIPKVED-----TQIDLPLTAFIPSDYIP 1059 Query: 1019 DVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 D+ +++ Y+RI S ++ +EL +I ++ DR+G+LP P L + +L+ A+ LG ++ Sbjct: 1060 DLEEKMAAYRRITSIESTDELPKIALDWGDRYGMLPSPVEELFKVVKLKHLAKSLGFSRI 1119 Query: 1079 EGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQH 1110 + K ++ E PAW + L + P H Sbjct: 1120 KVEGKQNLV--LETPMEEPAWKL-LAENLPNH 1148 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 22/262 (8%) Query: 30 LVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIIS 89 +V+ +A+ +++I ++ A R ++ Q V E PYD +++ Sbjct: 79 IVSSLAQSLEKNLLVITATLEEAGRWTAQLELMGWQTVNFYPTSEASPYDPGRLESEMVW 138 Query: 90 SRLSTLYQLPTMQ--RGVLIVPVNTLMQ-RVCPHSFLHGHALVMKKGQRLSRDALRTQLD 146 ++ L +L +G IV +Q + P + L + L +++GQ + +L L Sbjct: 139 GQMQVLAELIQGHQVKGKAIVATEKALQPHLPPVATLREYCLALRRGQEMDSKSLELTLA 198 Query: 147 SAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEV 206 GY V G+++ RG ++D+FP+ +ELP RL++F DE++ +R FD SQR+L+++ Sbjct: 199 RLGYERGSTVETEGQWSRRGDIVDIFPVSAELPVRLEWFGDELEKIREFDPASQRSLDDL 258 Query: 207 EAINLLPAH-----EFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQ 261 + L P E + AI+L S W + E E ++ + G++ + Sbjct: 259 TGLVLTPTSFDQVIEPALNAQAIDL--SAWGEDAET----EQLFGK-------EGLQRFL 305 Query: 262 PLFFSEPLPPLFSYFPANTLLV 283 L F+EP L Y P T+ V Sbjct: 306 GLAFTEP-ACLLDYLPTETVCV 326 >UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Acidobacteria RepID=Q1IHV1_ACIBL Length = 1182 Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust. Identities = 299/662 (45%), Positives = 437/662 (66%), Gaps = 7/662 (1%) Query: 441 LALICESDLLGE-RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTL 499 L DL E VA +Q R + + +L I VVH+EHG+G+Y G+ + Sbjct: 472 FVLFGTRDLFDESEVASAQQPKRSRSKVSAFLSDFRDLTINDYVVHVEHGIGQYQGLKEI 531 Query: 500 EAG-GITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAA 558 G G E+++L YA A+LYVP++ L LI +Y L++LG W++ + + Sbjct: 532 AQGDGEPAEFMILEYAEGARLYVPLTRLDLIQKYRSSEGVKPALNRLGTQQWAKTKARVK 591 Query: 559 EKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQ 618 + ++D+A ELL +YA R +G AF + + F D+F F T DQ AI V DM Sbjct: 592 KAMKDMADELLKLYAARKTAKGHAFSATGQFEREFDDAFEFNETEDQENAIRDVRQDMES 651 Query: 619 PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPV 678 MDRL+CGDVG+GKTEV+MRAAF AV ++KQVAVL PTT+LA QH++ F+ RF+ +PV Sbjct: 652 DTPMDRLLCGDVGYGKTEVSMRAAFKAVSDNKQVAVLAPTTVLAFQHFETFKRRFSAFPV 711 Query: 679 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH 738 ++EMISRFR+AK+Q +I+ V G++DILIGTH++L D+ F DLGL+++DEE RFGVRH Sbjct: 712 KVEMISRFRTAKQQKEIVERVNNGQVDILIGTHRVLSKDIHFPDLGLVVIDEEQRFGVRH 771 Query: 739 KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVV 798 KER+K +R VD+LT++ATPIPRTL+M++ G+RD+S+I TPP R+A++T V ++D ++ Sbjct: 772 KERLKQLRKEVDVLTMSATPIPRTLHMSLLGLRDMSVIETPPKDRMAIQTVVAKWDEKLI 831 Query: 799 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 858 + AI +E+ RGGQ+Y+++N VE+I + ++++ ELVP+A+I +GHGQM E +LE +M F Sbjct: 832 KSAIEQELDRGGQIYFVHNRVESIYEISDKIHELVPKAKILVGHGQMGEGQLEDIMLKFM 891 Query: 859 HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 ++LV TTIIE G+DIP NT+I+ RAD GL++L+QLRGRVGRS+ +AYA+LL P Sbjct: 892 RHDADILVATTIIENGLDIPLCNTMIVNRADRHGLSELYQLRGRVGRSNRRAYAYLLVPP 951 Query: 919 PKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMEL 978 + +T A++RL A+ DLGAGF +A DLE+RGAG LLG EQSG +E +GF LY + Sbjct: 952 DRELTELARRRLAALKEFSDLGAGFKIAALDLELRGAGNLLGGEQSGQIEAVGFELYTTM 1011 Query: 979 LENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENE 1038 LE V +K + +T++ L + +P ++I + N RL YKR+A + E + Sbjct: 1012 LERTVREMKGEVQEE-----QAETQLNLGLNIRIPPEYIKEENQRLRMYKRVAGVEGEPQ 1066 Query: 1039 LEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPA 1098 L ++ EL DR+G P P R L+ ARLR A+++GI ++ + F EK ++P Sbjct: 1067 LNDVAAELQDRYGAPPAPVRNLIQYARLRLLAERIGIAGIDRQRDQINMRFTEKAQIDPE 1126 Query: 1099 WL 1100 L Sbjct: 1127 KL 1128 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 10/227 (4%) Query: 2 PEQYRYTLPVKAGEQRL-LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60 PE R VK+G R+ + LT +A A A ++ P++++ P + A L + Sbjct: 17 PEFLRAATQVKSGTGRIRVSGLTPSARALHYALFSKATLKPLIVVVPSNRAAEELLPIVQ 76 Query: 61 QFT--------DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNT 112 + D +VM L ++ LPY++ SPH +I +R + L+++ + +I P Sbjct: 77 AYCELTGTAHADAVVM-LPAYDVLPYENLSPHPEIQEARAAALWKIVSGTARFVIAPFVA 135 Query: 113 LMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLF 172 P F V+ +G + D LR L+++GY VD V GEYA RG +LD++ Sbjct: 136 TAMHYRPAEFYFDLTKVINRGNSIDSDELRAHLNTSGYSTVDVVEMPGEYALRGGILDIY 195 Query: 173 PMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT 219 P SE P R++ F DE++S+R FD ++QR+ + + LLP + P Sbjct: 196 PPESEHPVRIELFGDEVESIRKFDTETQRSAGATDEVVLLPLSDTPV 242 >UniRef50_C6HVP9 Transcription-repair coupling factor n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVP9_9BACT Length = 1145 Score = 596 bits (1536), Expect = e-168, Method: Compositional matrix adjust. Identities = 398/1051 (37%), Positives = 587/1051 (55%), Gaps = 59/1051 (5%) Query: 50 QNALRLHDEISQF-----TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLP--TMQ 102 + ALRL +EI + V+ + E LPY+ SP I + R+ L +L T Sbjct: 61 EKALRLVEEIRSAPLLLDMEPDVLLFPEEEVLPYERESPADFIRAERIHALDRLASDTPP 120 Query: 103 RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEY 162 V+ V L + + P L ++ G ++ L + GY V QV GE+ Sbjct: 121 DVVVSPVVAVLRKTLSP-PLLKSVRRTLRTGMEEDPQSVVETLLAQGYVRVPQVTAPGEF 179 Query: 163 ATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT-DK 221 + RGAL+DL+ P RL++ D EI S+R FD ++QR++E V ++LLP+HE+ T Sbjct: 180 SVRGALVDLYSTDRRRPVRLEWDDLEIRSIRSFDPNTQRSVEAVGEVDLLPSHEWITPSP 239 Query: 222 AAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL 281 ++++ W D H+ P GIE + P FFSE P+ S P + Sbjct: 240 SSLDTPSRDWID--------RHLSL-----PFPPGIERYLPSFFSETAAPVLSR-PDILI 285 Query: 282 LVNTGDLETSAERFQADTLARFE-NRGVDPM--RPLLP-PQSLWLRVDELFSELKNWPRV 337 LV+ D + +R +D ++R E V P R LP P + + L + W + Sbjct: 286 LVD--DWKAVLDR-TSDWISRIEEGWKVLPAEERSFLPAPDAAFF----LPKSRQEWESL 338 Query: 338 QLKTEHLP--TKAANANLGFQKLPDLAVQAQQKAPLDALRKF-LETFDGPVVFSVESEGR 394 LP T + A G L A+ L + + + + V + G+ Sbjct: 339 ------LPCLTVSDEAPEGTPSLLGSVPSARIDRNLSLISEIERQPREWRTVIFCRTRGQ 392 Query: 395 REALGELLARIKIAPQRIMRLDE-ASDRGRY---LMIGAAEHGFVDTVRNLALICESDLL 450 +G++L ++ I D AS GR L+ G E F + + ++ ++ L Sbjct: 393 MSRIGDMLEAGELP--YITSFDSLASGAGRLPVTLLQGDVEEAFELPLDQILVLSDTWLF 450 Query: 451 GERVARRRQDSRRTINPDTLI--RNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY 508 + V+R R+ + T + R+ G VVHL G+GR+ G+ + G GE+ Sbjct: 451 KKPVSR---PPFRSFSTSTQVYRRDRPTFADGDYVVHLHQGIGRFRGLQEVSVGANRGEF 507 Query: 509 LMLTYANDAKLYVPVSSLHLISRYAGGAEENAP-LHKLGGDAWSRARQKAAEKVRDVAAE 567 ++ Y + Y+ V + + Y G E +AP + +LGG +WS+ + + ++V ++A+ Sbjct: 508 AVIEYLGGDRFYLSVDQMDQLLPYQG-PEGSAPRIDRLGGKSWSQTKSRVRKQVEKISAD 566 Query: 568 LLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 L+ +YA+R A EGFAF + + F SFP++ T DQ +AI AVLSDM P MDRL+ Sbjct: 567 LVMLYARRKAAEGFAFSPESILTREFDQSFPYDLTTDQEEAIQAVLSDMESPTPMDRLIL 626 Query: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 GDVGFGKTEVAMRAA AV + KQVAVLVPTTLLA QH++ F++RFA +PVRIE +SR Sbjct: 627 GDVGFGKTEVAMRAAIRAVADGKQVAVLVPTTLLALQHHETFKNRFAGFPVRIESLSRMV 686 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 S EQ + + G+ DI++GT LL + V+F+DLGLLI+DEE RFGVR KE + + Sbjct: 687 SPAEQKLVRERLRRGETDIVVGTTALLANAVEFRDLGLLIIDEEQRFGVRQKENLASRFP 746 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL 807 NVD LTL+ATPIPRTL MAMSG++ +S I TPP R A+KT + +D +RE I RE+ Sbjct: 747 NVDRLTLSATPIPRTLQMAMSGLKGISFIMTPPQGRKAIKTAIMRFDRERIREVIDRELA 806 Query: 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 R GQV++++N V +I + A LA L PEA +A HGQM E E+E VM F + +LV Sbjct: 807 REGQVFFIHNRVSSIARWARYLAALFPEAGVAYAHGQMGEEEIEAVMGKFLRRESRILVS 866 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 TTI+E+G+DIP ANTI+I RAD FG+A+L+QLRGRVGR QAYA+ +TP +A+ A+ Sbjct: 867 TTIVESGLDIPYANTILINRADMFGIAELYQLRGRVGRGGQQAYAYFITPSEEALGEVAR 926 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK 987 KRL + + LG+G+ +A DLEIRGAG LLG +Q+G + +G LY+E++E AV AL Sbjct: 927 KRLHTLTTHSGLGSGYQIAMRDLEIRGAGSLLGHQQTGQVAMVGLDLYLEMVEEAVAALS 986 Query: 988 AGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELI 1047 + + + VE + + +P+D++ + R+ FY+R+A A T + + I+ EL Sbjct: 987 SE---TPPPPGEEPARVEWKTEARIPEDYLGHPSERIDFYRRLAHADTMDSVTRIEEELS 1043 Query: 1048 DRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 DRFG LP R LL AR+R A + G ++ Sbjct: 1044 DRFGPLPRETRNLLAGARIRILATQRGFSEV 1074 >UniRef50_C1SMC7 Transcription-repair coupling factor Mfd n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMC7_9BACT Length = 1103 Score = 594 bits (1531), Expect = e-168, Method: Compositional matrix adjust. Identities = 384/1085 (35%), Positives = 590/1085 (54%), Gaps = 76/1085 (7%) Query: 18 LLGELTGAACATLVAEIAERHAGPV-VLIAPDMQNALRLHDEISQ-----FTDQMVMNLA 71 LL L G C+++ R G V +L+A + R +D I Q F+ V+ Sbjct: 3 LLSSLWG--CSSIWHFYNNRPKGRVSILVAGNK----REYDLIMQEAEFFFSGVRVLGFP 56 Query: 72 DWETLPYDSFSPHQDIISSRLSTL-YQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVM 130 ++ PY+ ++ + R STL + L +L+ L++ + P + Sbjct: 57 EYTQDPYEEARVLPEVFAKRASTLDFLLNADASCILVTTPYGLLKSLPPKDVFASATADI 116 Query: 131 KKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEID 190 K G R+ L L +GY HV+ V GEYA RG L++FP SE P ++FFDDE + Sbjct: 117 KVGGTYEREELEYILAYSGYVHVEMVEGAGEYAFRGDTLEVFPADSETPCLIEFFDDEAE 176 Query: 191 SLRVFDVDSQRTLEEVEAINLLPAHE--FPTDKAAIELFRSQWRDTFEVK---------- 238 + D+ ++RTL+ + + LLPA E F D + S D E+ Sbjct: 177 RISYVDIRTRRTLKIEKTVRLLPASEALFDVDDLRKYINDSDILDKVELYGKYAGCHWLT 236 Query: 239 ---RDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERF 295 + E++ VS E + LFF+E +F+ F +L++ D E F Sbjct: 237 PAVHNMENLMDYVS--------ESYNFLFFTEDYRSIFTDF---RVLID--DKMPEGENF 283 Query: 296 QADTLARFENRGVDPMRPL--LPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANL 353 + N + P R L + + + D +E + + K+ + NL Sbjct: 284 -------WNNNFIAPSRMLFYMTEDRVNVMADITTAESEG---TRYKSSAMLFAGKKGNL 333 Query: 354 GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIM 413 +Q + A +D ++ + E V+ S+ES+ + E P ++ Sbjct: 334 -YQSM---------SAAMDIIKSYAEK-SFRVICSIESDRLAKLFSEFSKDYAFIPAKVE 382 Query: 414 RLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRN 473 E G YL GF+D LA+ + D+ G R ++ + + Sbjct: 383 NYKEVDKAGLYLHSEKFRGGFIDEKLMLAVFTDEDIFGTAKKRPKRGKKELYST-----T 437 Query: 474 LAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYA 533 +++L G VVH+++G+G Y G+ GG+ G+++ L Y N LYVP+SS+ I +Y Sbjct: 438 ISDLEPGDHVVHVDYGIGIYLGLVHQSIGGVEGDFIQLEYDNSEFLYVPLSSIGQIQKYI 497 Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 G + L W + + +A + + +A +LL +YAQR ++GF+F D F Sbjct: 498 GSEGSRPRVSSLQTQQWKKVKAQAKARAKKIAMDLLKLYAQRKVEKGFSFTDDGNMLDNF 557 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 SF ++ T DQ AI+ V +DM + M+RLVCGDVGFGKTEVAMRAA AV KQVA Sbjct: 558 EQSFEYDETDDQLSAIHDVYNDMESAMPMERLVCGDVGFGKTEVAMRAACKAVAGGKQVA 617 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 VLVPTT+LA+QHY F +RF + PV+++ +SRFR+A++ QIL ++++G +DILIGTHK+ Sbjct: 618 VLVPTTVLARQHYMTFFERFKDLPVKVDYVSRFRTARDTRQILVDLSKGDLDILIGTHKM 677 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 L +++F+DLGLLI+DEE RFGV HKE+IKAMR+NVD+L L+ATPIPRTL +++SG+RD+ Sbjct: 678 LSKEIEFQDLGLLIIDEEQRFGVAHKEKIKAMRSNVDVLYLSATPIPRTLQLSLSGIRDI 737 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 S I TPP RL V T V + D + V+ AI RE+ RGGQV++L+N VENIQ A + ++ Sbjct: 738 STIDTPPVDRLPVITKVIKRD-VEVKNAIQRELERGGQVFFLHNRVENIQTVAAGVKNML 796 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 P A ++I HGQM ELE+++ +F+ + +VLVCT IIE GIDI ANTI+I A H GL Sbjct: 797 PGANVSIAHGQMTSSELEKILMEFYSGKTDVLVCTAIIENGIDIANANTIVINDAAHLGL 856 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 AQ++QL+GRVGRS + Y +L+ +++ AQKRL+ I L DLG+G +A +DL++R Sbjct: 857 AQIYQLKGRVGRSGRRGYCYLVVEQFSSLSDVAQKRLKIIQQLSDLGSGVKIAFYDLQLR 916 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLP 1013 GAG+LLG +QSG M +G+ L++ +++ AV LK S TE+ +P +P Sbjct: 917 GAGDLLGADQSGFMVKVGYELFIAMIDEAVKDLKGITS------ISADTEIITAIPHFIP 970 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKL 1073 D+I D RL +Y++ + + + + E+ EL + +G L L I +++ A Sbjct: 971 ADYIEDTKIRLDYYRKFSGVEDMDSVRELLYELSELYGELKPETENLGRIMLIKKLAGFA 1030 Query: 1074 GIRKL 1078 + K+ Sbjct: 1031 NMEKV 1035 >UniRef50_C9KMW0 Transcription-repair coupling factor n=3 Tax=Veillonellaceae RepID=C9KMW0_9FIRM Length = 1129 Score = 593 bits (1530), Expect = e-168, Method: Compositional matrix adjust. Identities = 298/653 (45%), Positives = 434/653 (66%), Gaps = 6/653 (0%) Query: 428 GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLE 487 G+ GF L ++ E D+ G +R R+ + I + ++ G VVH Sbjct: 382 GSLLTGFEMASARLVVVTEKDIFGRH--KRHTAVRKHSDYGEKISHFRDIKPGDYVVHES 439 Query: 488 HGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGG 547 HG+G+Y G+ TL+ GGI +YL + YA D KL+VP + L+ +Y G + LH++GG Sbjct: 440 HGIGKYLGVETLDVGGIHKDYLHIQYAGDDKLFVPTDQVGLLQKYIGSEGDVPRLHRMGG 499 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607 W +A+ +A + V D+A +L++IYA+R +G AF D + F D+FP+E T DQ + Sbjct: 500 TEWVKAKARAKKSVEDIAQKLIEIYAKRKDAKGHAFPPDDASQREFEDAFPYEETEDQLR 559 Query: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667 AI + +DM + MDRL+CGDVGFGKTEVA+RAA+ A + KQVAVLVPTT+LAQQHY Sbjct: 560 AIAEIKADMEREKPMDRLLCGDVGFGKTEVAIRAAYKAAMDGKQVAVLVPTTVLAQQHYQ 619 Query: 668 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-QSDVKFKDLGLL 726 F RF + I++I RFR+ K+Q + + +V G++DILIGTH +L Q+ VK+KDLGLL Sbjct: 620 TFTTRFNGFAPVIDVICRFRTPKQQKETIEKVRLGQVDILIGTHAILNQNKVKWKDLGLL 679 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 IVDEE RFGV+ K++I+ + A +D+LTL+ATPIPRTL+M++ G RD+SII TPPA R V Sbjct: 680 IVDEEQRFGVKQKDKIRKLAAGIDVLTLSATPIPRTLHMSLVGARDMSIIETPPAERFPV 739 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 +T+V E + ++ AI RE+ RGGQVY++YN V+ I + + + LVPEARI HGQM Sbjct: 740 QTYVVENNDTIIANAIRREMKRGGQVYFIYNRVDTIDRMRDHIESLVPEARIQTAHGQMP 799 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 E LE VM DF+ +++L+ T+I+E G+D+ ANTII+ ADHFGL+QL+Q+RGRVGRS Sbjct: 800 EEMLEHVMMDFYEGDYDILLATSIVENGLDVANANTIIVYNADHFGLSQLYQMRGRVGRS 859 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 HH A+A+ + K +T A+KRL+A+ +LGAGF +A DLEIRGAG LLG +Q G Sbjct: 860 HHMAFAYFVYQADKILTETAEKRLQAMKEFAELGAGFKIAMRDLEIRGAGNLLGAQQHGH 919 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026 + ++GF +Y +LLE AV+ L+ G+ P + + ++L+ + + FI D ++ Sbjct: 920 IASVGFEMYCKLLEEAVERLQNGKAP---EEAPPEPVIDLQTEAYIDGGFIADAMHKIEI 976 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLE 1079 Y+RIA+ ++ E+ + ELIDRFG +P LL++AR++ A+ LGIR ++ Sbjct: 977 YQRIAAIRSNEEIRSLLDELIDRFGDPTEPVMHLLEVARIKNYARDLGIRAIK 1029 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 84/147 (57%) Query: 67 VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGH 126 ++ L + +T + + Q+ + R+ L +L + +++ +Q+ + Sbjct: 79 IVELPEVDTFDVKAAAKSQERAARRMEVLGRLVRGEHIIVLARTEAAVQKGMGRNEFKRL 138 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 +L ++ G+ L R+ L +L GY H ++V G+++ RG ++D+F + + +P R+++FD Sbjct: 139 SLTLRMGEVLPREELLERLVDLGYEHAEEVERVGQFSVRGGIVDIFAINAAVPVRVEYFD 198 Query: 187 DEIDSLRVFDVDSQRTLEEVEAINLLP 213 DEIDSLR FD+D++R+ + V A ++P Sbjct: 199 DEIDSLREFDLDTKRSTKNVGAATIMP 225 >UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Tax=Bacteria RepID=C4DT42_9ACTO Length = 1356 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 320/665 (48%), Positives = 439/665 (66%), Gaps = 30/665 (4%) Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVAR----RRQDSRRT--INPDTLIRNLAELH 478 + +G HG VD LA++ D+ G + A RR SRR +NP EL Sbjct: 625 VTVGGLSHGIVDEAAKLAILTGDDISGGKGATTRDMRRMPSRRKGGVNP-------LELS 677 Query: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAK------LYVPVSSLHLISRY 532 G VVH +HGVGRY + G EYL++ YA + L+VP +L ++RY Sbjct: 678 NGDYVVHEQHGVGRYIELVRRTVNGAEREYLVIEYAASKRGQPADRLFVPTDALDQLTRY 737 Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 GG E +HKLGG W +A+ +A + VR++AAEL+ +YA R A EG AF D + Sbjct: 738 VGG--EMPSVHKLGGSDWQKAKSRAKKAVREIAAELIKLYAARQATEGHAFGPDTPWQRE 795 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 D+FP++ TPDQA AI+ V SDM MDRL+CGDVG+GKTE+A+RAAF AV + KQV Sbjct: 796 LEDAFPYQETPDQAGAIDEVKSDMMGRTPMDRLICGDVGYGKTEIAVRAAFKAVTDGKQV 855 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 AVLVPTTLLA QH + F +R + +PV I+ +SRF++ E QI + G++DI++GTH+ Sbjct: 856 AVLVPTTLLASQHLNTFTERMSQFPVTIKQLSRFQTDAEAEQIRKGLIAGEVDIVVGTHR 915 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 LLQ++ +FKDLGL+IVDEE RFGV HKE++KA+RA+VD+L ++ATPIPRTL MA++G+R+ Sbjct: 916 LLQTETRFKDLGLVIVDEEQRFGVEHKEKLKALRAHVDVLAMSATPIPRTLEMAITGIRE 975 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 832 +S I TPP R V TFV Y+ V AI RE+LR GQV+YL+N VE+I+KAA RL E+ Sbjct: 976 MSTITTPPEERHPVLTFVGGYEDKQVGAAIRRELLRDGQVFYLHNRVESIEKAATRLREI 1035 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 VPEAR+ + HG+M E LE++M DF + F+VLV TTIIE+GIDIP ANT+I+ERAD G Sbjct: 1036 VPEARVVVAHGKMGENRLEQIMQDFWNGEFDVLVSTTIIESGIDIPNANTLIVERADLLG 1095 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 L+QLHQ+RGRVGR +AYA+ + P K +T A +RL +A +LGAG +A DLEI Sbjct: 1096 LSQLHQIRGRVGRGRERAYAYFMYPPEKPLTEQAHERLATVAQHTELGAGMYVAMKDLEI 1155 Query: 953 RGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMP--S 1010 RGAG LLG EQSG + +GF LY+ ++ +AV K +E L TEV++ +P + Sbjct: 1156 RGAGNLLGGEQSGHIAGVGFDLYVRMVGDAVRTFKGAKEEIL-------TEVKIDLPVDA 1208 Query: 1011 LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQA 1070 +P D+IP RL Y+++A + + EL+E++ E+ DR+G LP L+ +AR R A Sbjct: 1209 HIPYDYIPVERLRLEMYRKLAEVRDDAELDEVRTEMADRYGDLPAEVDNLVHVARFRLLA 1268 Query: 1071 QKLGI 1075 + G+ Sbjct: 1269 RAAGL 1273 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/161 (34%), Positives = 83/161 (51%), Gaps = 12/161 (7%) Query: 64 DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG---VLIVPVNTLMQRVCPH 120 D V WETLP++ SP D + RL+ L++L Q V++ PV +L+Q P Sbjct: 82 DGSVAFYPAWETLPHERLSPRSDTVGKRLALLHRLAHPQGAPLRVVVAPVRSLLQ---PQ 138 Query: 121 SFLHG----HALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176 L G + + G+ L +L Y VD V + GE+A RG +LD+FP Sbjct: 139 --LKGLGDLKPVRLAVGESTDLSDLAAELSDLAYARVDLVEKRGEFAVRGGILDIFPPTD 196 Query: 177 ELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF 217 E P R++FF DEI+S+R F V QR+L++ + + P E Sbjct: 197 EHPSRVEFFGDEIESIRSFAVADQRSLDKADTLFAPPCREL 237 >UniRef50_UPI0001C317DD transcription-repair coupling factor n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317DD Length = 1112 Score = 592 bits (1526), Expect = e-167, Method: Compositional matrix adjust. Identities = 326/739 (44%), Positives = 460/739 (62%), Gaps = 15/739 (2%) Query: 343 HLPTKAANANLGFQ-KLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGEL 401 HL + L F+ + D+A + ++A + + + V F EG R A Sbjct: 318 HLSSIDGGQPLAFRGQAADVAARGVKEAEPELEKLVRSGYRTVVAFGRRGEGDRAAYN-- 375 Query: 402 LARIKIAPQRIMRLDEASDRGRYLMIGAAE--HGFVDTVRNLALICESDLLGERVARRRQ 459 L R+K+ +D + RG L A GF+ LA+I E L R AR Sbjct: 376 LGRMKV-----RWVDGDAPRGADLAFVEARLRDGFIAPGFRLAVIPEHRLFHRRPARTAG 430 Query: 460 DSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKL 519 T +R+ +L G VVH +HG+ R+AG T G+T +YL L YA K+ Sbjct: 431 TG--TGRRRGALRSFTDLRTGDIVVHEDHGLARFAGFDTKTVAGVTRDYLNLEYAGSDKV 488 Query: 520 YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 ++PV ISRY G ++ PL KLGG W + +A +++A ELL++YA+R + Sbjct: 489 FMPVDQFAKISRYVGAGGDHPPLSKLGGRRWDTLKARARRAAQEMAGELLNLYAERKRRA 548 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 G AF D + + F D++P+ TPDQ +AI V +DM MDRL+CGDVG+GKTEVA+ Sbjct: 549 GHAFPPDSDWMREFEDAWPYRETPDQREAIEQVKTDMETARPMDRLICGDVGYGKTEVAL 608 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 RAAF A ++ +QV VLVPTT+LAQQHY F +R ++P IE +SRFR A EQ + Sbjct: 609 RAAFKAANDGRQVMVLVPTTILAQQHYGTFAERLKDYPFTIEHVSRFRPAAEQRAAIRAF 668 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 EG +DILIGTH+LL DV+ +DLGLLIVDEE RFGV+ KE ++ ++ VD++ ++ATPI Sbjct: 669 TEGSVDILIGTHRLLSRDVRPRDLGLLIVDEEQRFGVKQKELLRQLKLKVDVIAMSATPI 728 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTL M+++G+RD+S+I TPP R VKT+V EYD +V+ AI RE RGGQ ++L+N V Sbjct: 729 PRTLQMSIAGIRDISVIETPPEGRRPVKTYVGEYDEQLVKSAIERERSRGGQAFFLHNRV 788 Query: 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 E I + AERL L PEAR + HGQ+ E+ LE M F +VLV T+IIE+GIDIP Sbjct: 789 ETIDETAERLRALCPEARFEVAHGQLDEKTLEERMLRFLRGEADVLVATSIIESGIDIPQ 848 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 ANT+++ERAD FGL+QL+Q+RGRVGRS +AYA+LL P A+T DA +RL A++ +L Sbjct: 849 ANTLMVERADLFGLSQLYQIRGRVGRSRERAYAYLLYPSASALTADAAQRLSALSDYTEL 908 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 GAGF +A DLEIRGAG LLG+EQSG + +GF LYM++L+ AV + G E E+L + Sbjct: 909 GAGFKVAMRDLEIRGAGNLLGDEQSGHVAALGFELYMQMLDEAVQEM--GGEDGTEEL-A 965 Query: 1000 QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPART 1059 + +++ + + +P D+IP ++ ++RIA A+ +EL E++ EL DRFG P+P R Sbjct: 966 EPVRLDVNVDAYVPVDYIPYEQAKIDVHRRIAGAREVSELHELRSELADRFGEPPEPLRN 1025 Query: 1060 LLDIARLRQQAQKLGIRKL 1078 LL + + R + + G R + Sbjct: 1026 LLLLQQARIKLGEAGARAV 1044 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 97/193 (50%), Gaps = 6/193 (3%) Query: 30 LVAEIAERH-AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDS-FSPHQDI 87 +VA +A++ A P++++A D + A L ++ + + + Y+S +P + Sbjct: 35 VVAALAQQDPARPLLVVAGDDRQARDLAADMRTWLQPRPVRFYPSRGVAYESHLAPPAHL 94 Query: 88 ISSRLSTLYQLPTMQRGVLIVPVNTL---MQRVCPHSFLHGHALVMKKGQRLSRDALRTQ 144 + R++ L L +RG V + P+ L H ++ G+ + D Sbjct: 95 VGLRVAALDAL-IGERGAAAPVVVVSAVALSEKVPNPALRPHGFTLRVGELMDLDESAED 153 Query: 145 LDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLE 204 L +AGY VDQV + G++A RG LLDL+P + R+D F DEI+SLR F +QR+L Sbjct: 154 LVAAGYERVDQVEDRGQFAIRGGLLDLYPATEDRAVRVDLFGDEIESLRWFSTFTQRSLG 213 Query: 205 EVEAINLLPAHEF 217 + E + + PA E Sbjct: 214 DAEEVEVSPAAEL 226 >UniRef50_B2S2U1 Transcription-repair coupling factor n=4 Tax=Treponema RepID=B2S2U1_TREPS Length = 1140 Score = 591 bits (1523), Expect = e-167, Method: Compositional matrix adjust. Identities = 381/1154 (33%), Positives = 581/1154 (50%), Gaps = 76/1154 (6%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSF 81 TG + E +VL+ P Q+ + +++ + L W +LPY Sbjct: 30 CTGGLRSYFFGEYVRTCCAHIVLVVPTEQDVAAVCTDLAHAAVPTRV-LPWWGSLPYRPV 88 Query: 82 SPHQDIISSR---LSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 SP+ + S R L L Q + L+ V P ++ + G+ + Sbjct: 89 SPNAHVFSHRVEALCALAQRDATAPCAFVFTQRALLTPVPPLDYVRTLKRSFRVGEHIEI 148 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPM----GSELPYRLDFFDDEIDSLRV 194 L QL GY VD V E++ RG +LD+ + YR+ + I+ + + Sbjct: 149 HTLAAQLMQWGYARVDHVSACAEFSLRGEILDIAAAAQAADNTQAYRIVCDFNTIERIHI 208 Query: 195 FDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLP 254 V + L+EV A L A E + I + E ++++ Sbjct: 209 LAVSTCAVLQEVSACTLYAAKEILWSEERIAFLHQNLQKLSECPAHCVPCIEELTHRKTY 268 Query: 255 AGIEYWQPLFFSEPLPPLFSYF-----PANTLLVNTGDLETSAERFQADTLARFENRGVD 309 G E + PL F P L YF P + ++ A Q + + + Sbjct: 269 EGEEMFYPLCFERPTCVL-EYFRHSPSPPSVFYLDYERQHNGARALQDECRNLYHKMQLA 327 Query: 310 ----PMRPLLPPQSLWLRVD-------------ELFSELKNWPRVQLKTEHLPTKAANAN 352 P R P+ + L F +L + L ++ P ++ N Sbjct: 328 HEHVPARWYPQPEHIVLDFSAVCALHLHTVYFTHFFPQLPACESICLASD--PARSFFGN 385 Query: 353 LGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRI 412 + + K L + DG VF V +E ++AL RI Sbjct: 386 IPYFKEELLRLSK----------------DGWHVF-VFAESEQQAL------------RI 416 Query: 413 MRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIR 472 L + D ++ A GF + ++ E ++ G R + R P I Sbjct: 417 RALVKGCDVT--VLPCALSAGFSIPALKILIVQEGEIFGRRRKTPQSVQRARSTP---ID 471 Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 EL+ G VVH ++G+G + G+ ++ +Y+ L YA + + +P+ HL+ RY Sbjct: 472 TFVELNPGDYVVHAQYGIGLFKGIERIKTAQSERDYVNLLYAQEETILIPIEQAHLVQRY 531 Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 G L LG +W + + + V ++A +L+++Y+ R G AF D E Sbjct: 532 IGNEGNKPHLDSLGSKSWETRKARVKKSVENIAQKLVELYSLRKTTRGHAFPKDDEWQYA 591 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F +FP+E T DQ I V DM + + MDRLVCGDVG+GKTE+AMRAAF AV KQV Sbjct: 592 FEAAFPYEETDDQRICIEEVKQDMQEAVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQV 651 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 L PTTLL +QH+ +RF ++PVRIE +SRF EQ ILA++A G ID+++GTH+ Sbjct: 652 VFLTPTTLLVEQHFRTICNRFKHFPVRIEKLSRFVPKSEQKDILAKLAHGDIDLIVGTHR 711 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 L+Q DV FKDLGL+I+DEE RFGV+ KE++K M+ NVD L+L+ATPIPRTL+M M +RD Sbjct: 712 LIQKDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGMLKIRD 771 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 832 +S++ TPP RL ++T ++++D +V AI +E+ R GQ++YL+N +EN++ L +L Sbjct: 772 MSLLTTPPEGRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRIENLESVKCMLQKL 831 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 VPE I + H M ELE + F+ + F +L+ TTIIE GID+P ANTIII+RAD +G Sbjct: 832 VPELSICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRADMYG 891 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 ++QL+QLRGRVGRS +AYA+LL H A++ A KRL+ I+ DLGAGF +A D+EI Sbjct: 892 VSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVALKDMEI 951 Query: 953 RGAGELLGEEQSGSMETIGFSLYMELLENAVDALK-AGREPSLEDLTSQQTEVELRMPSL 1011 RG G LLG+EQSG + ++GF LY++LLE A++ L+ A E +E T ++L Sbjct: 952 RGVGNLLGKEQSGDIYSVGFDLYVQLLEEAIERLQHAPNEQRIE------TVIDLNYRGF 1005 Query: 1012 LPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQ 1071 +P +I ++ YK+IA+A T ELE I+ E I RFG +P+ A L +A ++ + + Sbjct: 1006 IPHTYIAADEIKMELYKKIAAAHTHEELERIRTETITRFGPIPEEAAGLFTVAEIKVRCE 1065 Query: 1072 KLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDG--PTRLKFIQDLSERK 1129 KL I L+ + +IEF + ++ L+Q RLD P L D E K Sbjct: 1066 KLAILSLKETHESLLIEFDKVCDTAFKKILRLVQTSNDRVRLDAKQPNMLILTSDAIEIK 1125 Query: 1130 TRIEWVRQFMRELE 1143 + ++ + ++ LE Sbjct: 1126 EKGIFICEILKRLE 1139 >UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Oribacterium sinus F0268 RepID=C2KYF4_9FIRM Length = 1138 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 303/657 (46%), Positives = 434/657 (66%), Gaps = 7/657 (1%) Query: 433 GFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGR 492 GF L ++ E DL G+ + R++ ++ + I +L ELH G VVH HG+G Sbjct: 422 GFYLPKEKLLVMTEQDLYGQSLVGRKRRKKKQVE-SLHIGSLTELHKGDYVVHESHGIGI 480 Query: 493 YAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSR 552 Y G+ + G++ +YL + Y + LY+PV+ L I +YAG + L++L G W + Sbjct: 481 YEGIERIVTDGVSKDYLKILYGDGGNLYLPVNKLDGIEKYAGKEAKAPKLNRLNGSEWQK 540 Query: 553 ARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAV 612 + K VR++A ELL +YA+R + G+ F D + F ++FP+E T DQ AI A Sbjct: 541 TKSKVKGAVREIAKELLALYAKRQEERGYPFGKDTVWQREFEEAFPYEETGDQLLAIEAT 600 Query: 613 LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDR 672 DM MDRLVCGDVG+GKTE+A+RAAF AV + KQVA L PTT+LAQQ Y+ F +R Sbjct: 601 KEDMESEKIMDRLVCGDVGYGKTEIALRAAFKAVQDSKQVAYLCPTTILAQQIYNGFVER 660 Query: 673 FANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH 732 +PV + ++SRF+S KE + L ++A G+IDIL+GTH+LL DV FK+LGLL+VDEE Sbjct: 661 MKGFPVEVGILSRFQSQKEVHKTLEQLASGRIDILVGTHRLLSKDVHFKNLGLLVVDEEQ 720 Query: 733 RFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE 792 RFGV+HKERIK+++ NVD+LTL+ATPIPRTL+M++ G+RDLSI+ P RL ++T+V E Sbjct: 721 RFGVQHKERIKSLKENVDVLTLSATPIPRTLHMSLVGIRDLSILEEAPMDRLPIQTYVME 780 Query: 793 YDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 852 + +REAI RE+ R GQVYY++N V++I+ A RL +L+PEARIA HGQM E+ELE Sbjct: 781 EEEGTIREAISRELRRNGQVYYVHNRVKSIEDTALRLQKLLPEARIAYAHGQMGEKELEE 840 Query: 853 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 +M F +VLV TTIIETG+DIP ANT+II+ AD GL+QL+Q+RGRVGRS+ +YA Sbjct: 841 IMLSFIAGEIDVLVSTTIIETGLDIPNANTLIIQDADKMGLSQLYQIRGRVGRSNRTSYA 900 Query: 913 WLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF 972 +LL K++T +++KRL+AI +LG+G +A DLEIRGAG +LG EQ G ME +G+ Sbjct: 901 FLLYKKGKSLTEESEKRLKAIREFTELGSGIRIALRDLEIRGAGNVLGAEQHGHMEAVGY 960 Query: 973 SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIAS 1032 LY +LL +AV L+ G + ED +T++++ + + +P+ ++ + +L Y++IA Sbjct: 961 ELYTKLLRHAV-LLEKGEKQEEEDF---ETQLDVDLDAFIPESYMENEEQKLEAYQKIAL 1016 Query: 1033 AKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEF 1089 +E E +++ EL DR+G LP L +A LR K+G+ E K G I F Sbjct: 1017 LSSEEEKMDLEDELTDRYGDLPYQVENLFQVASLRNLLHKIGV--TECKIKRGEIHF 1071 Score = 102 bits (254), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 56/163 (34%), Positives = 90/163 (55%), Gaps = 2/163 (1%) Query: 87 IISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLD 146 I R L QL + G+L+ + +++++ + ++ GQ LS ++L+ L Sbjct: 104 ISRERSECLRQLVEEEEGMLVTTLPAMLEKLEGKNAFRQAVFTVQLGQTLSLESLQDSLH 163 Query: 147 SAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEV 206 S GY+ VDQV GEY+ RG +LD+F E P R++FFDDE+DSLR F ++SQR+LE+V Sbjct: 164 SLGYQRVDQVESRGEYSLRGGILDVFSNQMEEPLRIEFFDDEVDSLRYFSLESQRSLEQV 223 Query: 207 EAINLLPAHE--FPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 247 E N+ P E P+ A L +D + +P + ++ Sbjct: 224 EEANIYPVSEQGKPSSLKAFSLLDYLPKDCLVIVDEPVRVLEE 266 >UniRef50_C7PET5 Transcription-repair coupling factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PET5_CHIPD Length = 1126 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 296/658 (44%), Positives = 425/658 (64%), Gaps = 16/658 (2%) Query: 432 HGFVDTVRNLALICESD-LLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 HGF+D +L L+C +D + +R + + N ++ L EL G V H++HGV Sbjct: 399 HGFID--HSLKLVCYTDHQIFQRYHKYKVKQAYNKNKAITMKTLRELQAGDFVTHIDHGV 456 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW 550 G Y+G+ +E GG E + + Y N+ LYV ++SLH IS+Y+G ++KLG DAW Sbjct: 457 GVYSGLQKIEVGGKMQEAIRIIYKNNDLLYVNINSLHKISKYSGKEGVEPRVNKLGSDAW 516 Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 + ++KA +V+D+A +L+ +YA R A+ GF D SF +E TPDQ++A Sbjct: 517 DKLKEKAKTQVKDIAKDLIQLYAARKAQTGFPHSPDTYLQTELEASFLYEDTPDQSKATA 576 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 V DM P MDRLVCGDVGFGKTE+A+RAAF ++ + KQ AVLVPTT+LA QHY F Sbjct: 577 DVKRDMQSPAPMDRLVCGDVGFGKTEIAVRAAFKSIVDGKQAAVLVPTTILAFQHYKTFS 636 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 DR ++P ++ ++RF+SAKE+ + L +AEGKIDI+IGTH LL DVKFKDLG+++VDE Sbjct: 637 DRLKDFPCTVDYLNRFKSAKEKKETLQRLAEGKIDIIIGTHALLSKDVKFKDLGVMVVDE 696 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 E +FGV KE++K ++ NVD LTLTATPIPRTL ++ G RDLS+I TPP R ++T V Sbjct: 697 EQKFGVAAKEKLKQLKINVDTLTLTATPIPRTLQFSLMGARDLSVINTPPPNRQPIETEV 756 Query: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 +D ++R+AI E RGGQVY++YN V+ + + + + L P+ IA HGQM +L Sbjct: 757 HVFDHDLIRDAIYYETERGGQVYFVYNRVKGLGEMSSLIKGLCPDLSIATAHGQMEGHQL 816 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 E V+ DF ++++VLVCT I+E+G+DIP ANTIII A HFGL+ LHQLRGRVGRS+ +A Sbjct: 817 EEVILDFIDRKYDVLVCTNIVESGVDIPNANTIIINNAHHFGLSDLHQLRGRVGRSNKKA 876 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 + +LL P + D++KRL+ + +LG+GF +A DL+IRGAG LLG EQSG M I Sbjct: 877 FCYLLAPPISTLPGDSRKRLQTLEQHSELGSGFQIAMRDLDIRGAGNLLGGEQSGFMAEI 936 Query: 971 GFSLYMELLENAVDALKAGREPSLEDLTSQQTE----------VELRMPSLLPDDFIPDV 1020 GF +Y ++L+ A+ LK + DL Q E ++ + L+PD ++ + Sbjct: 937 GFDMYQKILDEAIRELK---QNEFRDLFKDQLEEKKDFVSDCTIDTDLEILIPDSYVESI 993 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 RL+ Y+ + + E++L+ +VE+ DRFG +P+P + L + R R A KLG K+ Sbjct: 994 QERLNLYQELDNITLESKLQAFEVEMQDRFGPVPEPVKDLFCMIRCRWMAIKLGFEKM 1051 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 114/240 (47%), Gaps = 23/240 (9%) Query: 19 LGELTGAACATLVAEIAERHAGPV--VLIAPDMQNALRLHDEISQFTDQMVMNLADWETL 76 L LTG+A T VA A A V + I D + A H+++ T + D Sbjct: 33 LTGLTGSA-TTFVAAGAWEMANSVNHLFILNDREEAAYFHNDLESITQGL-----DIFYF 86 Query: 77 PYDSFSP---HQDIISS----RLSTLYQLP--TMQRGVLIVPVNTLMQRVCPHSFLHGHA 127 P DSF +I SS R L + + + VL+ L ++V G+ Sbjct: 87 P-DSFKKAGFFNEINSSHSMLRTEALMKFSGNAVHKKVLVTYPEALWEKVAASVAYTGNM 145 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 + +K G L D L +L S G+ D V E G+YA RG +LD++ G+E PYR++ F + Sbjct: 146 VQLKVGDVLKVDDLLNKLVSWGFEFTDFVYEPGQYALRGGILDIYSFGNEKPYRIELFGE 205 Query: 188 EIDSLRVFDVDSQ---RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHI 244 +IDS+R+FD +SQ R L +V I + +KA++ F + +T +DP ++ Sbjct: 206 DIDSIRLFDPESQLSERKLNQVTLIANMDTQGLKHEKASLLGFLPE--NTIVWMKDPGYV 263 >UniRef50_O51568 Transcription-repair-coupling factor n=24 Tax=Borrelia RepID=MFD_BORBU Length = 1125 Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust. Identities = 339/1106 (30%), Positives = 597/1106 (53%), Gaps = 55/1106 (4%) Query: 15 EQRLLGELTGAAC---ATLVAEIAE-RHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL 70 EQ + LTG A L+ +I E G ++LI D ++ +++ T+Q + L Sbjct: 25 EQNIFFSLTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTLDKIKNDLQVITNQ-IFEL 83 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVM 130 + L Y I + R+ L+ G+ I + +L+ ++ + L + + Sbjct: 84 NYFSPLVYKGIGSKSTIFNERIKFLFNFYKKNPGIYITVLKSLLSKIPDKNTLLKNIYKI 143 Query: 131 KKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEID 190 +K ++ + L + GY +V GE+ +G ++D++P G + P R+ D+I+ Sbjct: 144 EKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYPFGEQNPIRIALNFDKIE 203 Query: 191 SLRVFDVDSQ-RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHI-YQQV 248 ++ F+ +Q + E+ +LP E D I +++ + + E K+ E + +++ Sbjct: 204 EIKKFNPLTQLKHDNEILEFQILPKKEIIWDDKTINTLKTKIK-SVEYKKILEELDFKKE 262 Query: 249 SKGTLPAGIEYWQPLFFSEPL-PPLFSYFPANTLLVNTGDLETSAERFQADTLAR-FENR 306 +K E + PL + L + + P +N + E + + L + E Sbjct: 263 TKTE-----EMFYPLVANTYLGDEIEKHTPIVNFEINNFEKEIEKIHQEYEKLYKEAEEA 317 Query: 307 G---VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAV 363 G +DP R LL ++ L+ D LFS++K+ LK++ + F ++A+ Sbjct: 318 GKNIIDPKRILLNYKTFNLKSDVLFSKIKS-----LKSKETIEFKIESERNF--FSNIAL 370 Query: 364 QAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR 423 ++ +L+ ++ + ESE ++E L + + ++++ + + Sbjct: 371 TKEE------FENWLKN-GFKIIIAAESESQKEKLKYIFKELPKVSIEVLKISSSLIIEK 423 Query: 424 YLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPV 483 + E +T G+++ + + S+ I + E+ V Sbjct: 424 EKIAIILESNIFNT-------------GQKINKAFESSK-----TKAIDSFVEIEKNSHV 465 Query: 484 VHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLH 543 VH+ HG+G + + ++ + +Y+ + YA KL++P+ +LI +Y G +N L Sbjct: 466 VHINHGIGIFRQIKRIKTSSLEKDYIEIEYAEGEKLFIPIEQTNLIQKYIGSDPKNIKLD 525 Query: 544 KLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTP 603 K+ W + + A +++ ++A +L+++Y++R + +G + D E LF FP++ TP Sbjct: 526 KISSKTWIKNKANAKKRIEEIADKLIELYSKRESIKGIKYPEDNELQLLFESEFPYDETP 585 Query: 604 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQ 663 DQ +AI + DM MDRL+CGDVGFGKTEVAMRAAF AV +KQV VL PTT+LA+ Sbjct: 586 DQIRAIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAE 645 Query: 664 QHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 723 QH++ F+ RF N+P++IE++SRF +++IL E+ GKIDI+IGTHK+L K+L Sbjct: 646 QHFNTFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNL 705 Query: 724 GLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 783 GL+I+DEE RFGV+ KE++K +R +VD L L+ATPIPR+L+M++ +RD+S++ PP R Sbjct: 706 GLIIIDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNR 765 Query: 784 LAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHG 843 + ++ ++ + ++++ AI E+ R GQV+ + +++E + + L P ARIAI HG Sbjct: 766 VKIEAYLESFSELLIKHAIESELSRDGQVFLVNHNIEELYYLKTLIERLTPYARIAIIHG 825 Query: 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903 ++ E+E +M++F + + +L+ TTIIE GIDIP ANTIII A+ FGLAQL+QL+GRV Sbjct: 826 KLTGEEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLYQLKGRV 885 Query: 904 GRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQ 963 GR +AYA+ L + + + +RL AI +LGAGF +A D+EIRG G LLG EQ Sbjct: 886 GRGSQKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGNLLGREQ 945 Query: 964 SGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTR 1023 G +E+IG Y+ +L A++ K G+ S E ++ ++++ +P+++ + + Sbjct: 946 HGEIESIGLDYYLTMLNKAIEK-KMGKISSDE----EEVDIKINYSGFIPENYAKNEQDK 1000 Query: 1024 LSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 + YK+I +TE E ++I+ EL + FG +P+ +LL +A L+ A+ L I KL+ + Sbjct: 1001 ILIYKKIFKIQTEEESKKIRSELHNDFGPIPEEINSLLMLAELKILAKDLNITKLKEKNR 1060 Query: 1084 GGVIEFAEKNHVNPAWLIGLLQKQPQ 1109 IE+ + +I +LQK P Sbjct: 1061 ALEIEYKNIESIPMEKIIEILQKHPN 1086 >UniRef50_D0LU01 Transcription-repair coupling factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU01_HALO1 Length = 1257 Score = 588 bits (1517), Expect = e-166, Method: Compositional matrix adjust. Identities = 317/694 (45%), Positives = 443/694 (63%), Gaps = 41/694 (5%) Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTL--EAGGITGEYLMLTYANDAKLYVPVSSLHL 528 I + ++L G VVH HG+G Y G+ L A G ++L + Y + Y+PV L Sbjct: 556 ISDFSQLAPGDHVVHAMHGIGLYRGLAKLPVSATGPAVDFLHIEY-RGGQFYLPVYRLGE 614 Query: 529 ISRYAGGAEENAP-LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 587 +SRY G AE +AP L KLGG W +AR+KA+ +V+ +A ELL +YAQRAA+ G A+ Sbjct: 615 VSRYVG-AEGHAPRLDKLGGVTWQKARKKASAQVKALAEELLKLYAQRAAQPGHAYPSSD 673 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 ++ F +F FE TPDQ +AI+ VL+DM MDRLVCGDVG+GKTEVA+RA F AV Sbjct: 674 HMFREFEATFAFEETPDQQRAIDEVLADMESERPMDRLVCGDVGYGKTEVALRACFKAVA 733 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 KQ A+L PTT+L +QHY +RFA WPV + +SRF+S EQ + +A G +D++ Sbjct: 734 GGKQAALLAPTTVLVEQHYATVCERFAGWPVSVGRLSRFQSRAEQLDTIKGLAAGTVDLV 793 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 +GTH++L DV+FKDLGLL++DEE RFGV HKER+K +R +D+LTLTATPIPRTL++AM Sbjct: 794 VGTHRVLSKDVRFKDLGLLVIDEEQRFGVTHKERLKRVRTQLDVLTLTATPIPRTLHLAM 853 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVE------- 820 SG+RDLSIIATPPA R AV+TFV + D V+RE I RE+ RGGQV+++ + Sbjct: 854 SGLRDLSIIATPPADRRAVRTFVAQVDDGVLREGIRRELGRGGQVFFVCPRIGADPAPSK 913 Query: 821 ----------------------NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 858 ++ + AE L LVPEAR+A+ HGQM LE+VM DF Sbjct: 914 GKVKGKGKSQGETARRVRRGDISLDEWAEHLRALVPEARVAVAHGQMSAEALEKVMIDFV 973 Query: 859 HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 +LV TTI+E+G+DI ANT+ ++RAD FGLAQL+QLRGR+GRS +A+ +LL P Sbjct: 974 SGNLEILVSTTIVESGLDIARANTMFVDRADSFGLAQLYQLRGRIGRSKQRAFCYLLVPP 1033 Query: 919 PKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMEL 978 P+ +++DA++RLE + +LGAGF +A+HDLEIRG GELLG +QSG++ +GF Y + Sbjct: 1034 PEKLSSDARRRLETLQRFSELGAGFQIASHDLEIRGGGELLGAKQSGAIAAVGFEAYAAM 1093 Query: 979 LENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENE 1038 LE AV L++G + L + + E+ + +P +PD++IPD RL YKR++ A+ E+E Sbjct: 1094 LEEAVAELRSG-DAGL--VRPRDPELNVDVPGYIPDEYIPDTGQRLDLYKRLSDAEDEDE 1150 Query: 1039 LEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPA 1098 L+ + E+ DR+G LPD L D+ L+ A+ L + LE + + AE + P Sbjct: 1151 LKILVEEITDRYGELPDEVELLADLMVLKIHARTLRAQSLELTQSRMSLALAEDTPLAPQ 1210 Query: 1099 WLIGLLQKQPQHYRLDGPTRL--KFIQDLSERKT 1130 L L +K + +RL RL F + ER + Sbjct: 1211 TLASLARK--KAFRLTPDMRLVRNFTAEEGERPS 1242 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 97/342 (28%), Positives = 157/342 (45%), Gaps = 38/342 (11%) Query: 22 LTGAACATLVAEIAER---HAGPVVLIAPDMQNALRLHDEISQFTDQM------------ 66 LT A+ A + A +AER AGPVV++APD +A L +++ F Sbjct: 26 LTRASLALVAARLAERADERAGPVVVVAPDESSARDLAQDVAFFLPHAQHAAAGTEPLAP 85 Query: 67 --VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPV-----NTLMQRVCP 119 ++L +T PY SP + ++ R++ L +L + G L+ PV L++RV P Sbjct: 86 PPALHLPALDTSPYAELSPDRLALAQRMAGLVRL--ARGGALLGPVVVLSAPALLRRVMP 143 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 L V+ + RDA +L AGY V + G +A RG ++D+F P Sbjct: 144 REALLARTAVLARDDEFDRDATAERLLRAGYTRAPVVEDAGTFAVRGGVIDVFTPLYRYP 203 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR 239 R++ F D ++S+R+FD +SQRTL +++ + + P E + A R + D + Sbjct: 204 ARIELFGDMVESIRLFDPESQRTLRDLDQVYVHPVRETVVSEGA--EVRRRILDAADAAH 261 Query: 240 DPE----HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF------PANTLLVNTGDLE 289 P + +++ G GIE P F + L PL SY PA ++V+ + Sbjct: 262 HPSAETRRVLERIDSGEEFVGIETLTPAFHTH-LAPLASYLVAGDAPPACWVIVDPDAIG 320 Query: 290 TSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSEL 331 +AE R+ R +D R PP ++ DEL + L Sbjct: 321 QAAEDEHDVAEDRYRER-LDDGRLAFPPSDHYVSPDELRATL 361 >UniRef50_Q1Q1A4 Similar to transcription-repair coupling factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1A4_9BACT Length = 1092 Score = 588 bits (1516), Expect = e-166, Method: Compositional matrix adjust. Identities = 321/758 (42%), Positives = 459/758 (60%), Gaps = 29/758 (3%) Query: 325 DELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGP 384 +E+F +LK + ++ L LP N FQ Q + + +K E D Sbjct: 293 EEIFKQLKTFTKITLSK--LPFTTENNAYAFQVKAIDEFPRQIQDIVAEFKKITEAHDKT 350 Query: 385 VVFSV---ESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNL 441 +VF + E + RE L P+ + R + L G GF N+ Sbjct: 351 IVFCINPAEEQRFREITSGL-------PEGLQRFE--------LRRGYISQGFRFADINI 395 Query: 442 ALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEA 501 A++ ++ ++ + ++ + I + +L G +VH+ HG+GR+ G+ +E Sbjct: 396 AILANHEIFHR--YKQHHEVKKVVQTRA-IDSFLDLKKGDYIVHVTHGIGRFLGIEIIED 452 Query: 502 GGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKV 561 G EYL+L Y K+YVP + + L+ +Y G + A L K+ +W +++A V Sbjct: 453 DGCKREYLVLEYDEGTKIYVPATKIELVQKYIGASGHKAKLDKIHSKSWEMRKKRAEHAV 512 Query: 562 RDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621 D+A++LL I A R AKEG + D + + F +F +E TPDQ Q + + SDM Sbjct: 513 ADIASDLLHIQASRNAKEGITYPPDTKWQRDFESAFIYEETPDQLQVLETIKSDMQSKRP 572 Query: 622 MDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIE 681 MDRL+CGDVG+GKTE+A+RAAF A KQ AVLVPTT+LAQQHY F +R A++PV IE Sbjct: 573 MDRLICGDVGYGKTELAIRAAFKAAMYGKQAAVLVPTTILAQQHYTTFSERMADYPVEIE 632 Query: 682 MISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKER 741 ++SR +S KEQ IL + GKIDILIGTH+LLQ DV FKDLGL+I+DEE RFGV HKER Sbjct: 633 VLSRLKSHKEQKDILEKTLAGKIDILIGTHRLLQKDVVFKDLGLVIIDEEQRFGVAHKER 692 Query: 742 IKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREA 801 K MR VD+LTLTATPIPRTL+M++ G++D+S + TPP R +++T + +D +R+A Sbjct: 693 FKKMRQVVDMLTLTATPIPRTLHMSLMGIKDISSLNTPPLGRQSIRTQIMRFDPQRIRQA 752 Query: 802 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR-ERELERVMNDFHHQ 860 IL E+ R GQVY+++N V NI++ A L+ +VPEARI + HGQM E+ L + M DF Sbjct: 753 ILLEMNRNGQVYFVHNRVYNIERIAHTLSTIVPEARILVVHGQMMDEKLLAQRMKDFVDH 812 Query: 861 RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 920 + ++LV TTIIE+G+DIP NTI I AD FGLA LHQLRGRVGR H AYA+++ P + Sbjct: 813 KADILVSTTIIESGLDIPNVNTIFINCADSFGLADLHQLRGRVGRYKHHAYAYIVLPIDR 872 Query: 921 AMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLE 980 +T +A+KR++AI +LGAGF +A DLEIRGAG +LG EQ G + +G+ +Y LLE Sbjct: 873 PVTPEAEKRVKAIEEFAELGAGFKIAMRDLEIRGAGNILGVEQHGHIAAVGYEMYCRLLE 932 Query: 981 NAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELE 1040 AV KA EP E ++L + S LPD++IP+ + ++ Y+R+ + T E++ Sbjct: 933 IAV--CKARNEPVSE---PPDVSLKLNLESFLPDEYIPEYSLKMDIYRRLNRSNTFKEID 987 Query: 1041 EIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 EI+ E+IDRFG P + LL + LR A+ IR + Sbjct: 988 EIRKEMIDRFGNAPQSVKNLLSESELRIIARDSKIRSI 1025 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 59/228 (25%), Positives = 117/228 (51%), Gaps = 13/228 (5%) Query: 3 EQYRYTL-PVKAGEQRLLGELTGAACATLVAEIAERH------AGPVVLIAPDMQNALRL 55 +QY+ + + +G+ + L G++ A +A H ++L+ PD ++A Sbjct: 12 KQYKEIIRQLSSGKGCCVNGLWGSSANLFAAAVANEHFYTKGLTPKILLVVPDAEDARED 71 Query: 56 HDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQL------PTMQRGVLIVP 109 +++ F++ V E + + ++DI++ RL L QL + Q V++ Sbjct: 72 WEDLKTFSNLPVTLFPAVEDIFNNESDAYEDIMAQRLFILNQLCRKNKDASHQTDVIVSS 131 Query: 110 VNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALL 169 + L+Q V + + + +KGQ + L L S Y+ QV GEYA RG ++ Sbjct: 132 IQALIQPVPSKKTIGDNIVSFQKGQEYPMENLIGLLHSHHYQETSQVENQGEYAIRGGII 191 Query: 170 DLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF 217 D+FP +E+P R+++F DEI+S+R F+V++Q+++ ++ + +L H+ Sbjct: 192 DIFPFATEIPCRIEYFGDEIESVRSFNVETQQSVAQINSCQILFVHKM 239 >UniRef50_D2MMW5 Transcription-repair coupling factor n=2 Tax=Erysipelotrichaceae RepID=D2MMW5_9FIRM Length = 1142 Score = 588 bits (1516), Expect = e-166, Method: Compositional matrix adjust. Identities = 348/1060 (32%), Positives = 576/1060 (54%), Gaps = 68/1060 (6%) Query: 28 ATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL-ADWETLPYDSFSPHQD 86 A L+A ++ P++++ ++ A + ++ ++ F + +L E+L ++ + + Sbjct: 37 ALLMALSYQQKPRPMIVLKSNLYLAQQFYERLTSFLSEKECSLFGTDESLRVEAIASSPE 96 Query: 87 IISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLD 146 + + ++ TL+ L +++ + ++ + S ++ +K + S L+ +L Sbjct: 97 LSAQQVDTLFSLQKHPNQIVVTCPSAYLRFLPLPSQFKEASIHLKINEEWSIKVLKEKLL 156 Query: 147 SAGYR---HVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTL 203 ++GY HVDQ + +A RG ++D++ + + P RL+FFD +I+S+R FD + QRT+ Sbjct: 157 ASGYHQQAHVDQPLS---FAIRGGIVDVYSINYDHPIRLEFFDTQIESIRFFDENIQRTI 213 Query: 204 EEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPL 263 +E + ++PA I R + E R+P Q L I+ + Sbjct: 214 GTIEEVEIVPASIVFFSFNQIGDIRKGIQQDLE--RNPNVFLQ----DELMTTIQAMEAH 267 Query: 264 FFSEPLPPLFSYFPANTLL---VNTGDLETSAERFQADTLARFENRGVDPMR------PL 314 F + + P +++ P L + +L S E D + R + + ++ L Sbjct: 268 LFDKSMYPYYAFVPNMAGLWDYMEDAELFISDEILVNDAIKRLKEDTISYIQEMAQENKL 327 Query: 315 LPPQSLWLRVDELFSELKNW-------PRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQ 367 LP LW ++ + + P ++ +LP + + + + V Sbjct: 328 LPRFDLWHDLERSMPASRCYYGDSYGDPVSHIEEVYLPNELLEKRIQIAQKQRVTVFVLN 387 Query: 368 KAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMI 427 K + +R E+L KI + + +E YL Sbjct: 388 KKEIQRIR------------------------EILDHEKIEYRFLKEKEEIEKEALYLYE 423 Query: 428 GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLE 487 GF + +A+ +L V R+ +I EL VVH Sbjct: 424 ADWSQGFFLADQEVAVYTARELF--EVHHRKGRYENKFRNAEIIHAYQELEPKDYVVHAN 481 Query: 488 HGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGG 547 +GVG+Y G+ T E I ++L + Y +++L VP+ L+ ++ L+KLG Sbjct: 482 YGVGQYMGIETKEINHIKRDFLRIIYKANSELLVPLEQFRLVRKFVSREGIVPKLNKLGS 541 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607 W + + K + V +VA LL++Y+ R G+AF D E+ + F D+FP++ T DQ + Sbjct: 542 GDWEKTKTKLQKNVEEVATRLLNLYSSREQHIGYAFSKDTEETKKFEDAFPYDLTEDQKK 601 Query: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667 A+ + DM MDRL+CGDVGFGKTEV++RA+F AV +HKQV VL PTT+LA+QH+ Sbjct: 602 AMVEIKKDMESSKPMDRLLCGDVGFGKTEVSIRASFKAVIDHKQVVVLCPTTILAEQHFS 661 Query: 668 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727 F++R+ ++ VRIE++ RF +Q +IL ++ +G +DILIGTH++L DV FKDLGLL+ Sbjct: 662 TFKNRYKDFAVRIEVLDRFVQKDKQQEILEDLEKGNVDILIGTHRVLSKDVHFKDLGLLV 721 Query: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787 +DEEHRFGV HKE+IK +R VD+L L+ATPIPRTL M++ G+R LS + TPP R +V+ Sbjct: 722 IDEEHRFGVEHKEKIKELRNGVDVLALSATPIPRTLQMSLIGVRSLSQLETPPLNRYSVQ 781 Query: 788 TFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 847 T+V E + ++ +AI +E+ R GQV+YLYN++E I A L + +P+ARI + HG++ Sbjct: 782 TYVVEKNQALIVDAIQKELSRKGQVFYLYNNIEFIYNRARTLQKELPDARIGVVHGKLGR 841 Query: 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 E+E +M F+HQ ++LV TTIIE GIDIP NTI+IE A +FGL+Q++Q++GRVGRS+ Sbjct: 842 DEIEDIMWRFNHQEIDILVTTTIIENGIDIPNVNTILIEDAQNFGLSQIYQMKGRVGRSN 901 Query: 908 HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSM 967 AYA+LL P+ K ++ AQKRL+A+ LG+G+ +A DL IRGAG+LLG QSG + Sbjct: 902 RLAYAYLLIPNRKQLSEVAQKRLQAVKEFAKLGSGYKVAMRDLTIRGAGDLLGSSQSGFI 961 Query: 968 ETIGFSLYMELLENAVDALK-----AGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNT 1022 +T+G Y+E+LE A++A + +EP +++ +++ S +P F D Sbjct: 962 DTVGIDFYIEMLEAAIEAKRNHQPIQKKEPKVKN--------NIQVSSYIPTGFAADDFD 1013 Query: 1023 RLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLD 1062 +L Y+RI + + ELE+ K+E+ D++G LP + D Sbjct: 1014 KLDLYQRIDALCHQQELEDYKLEIKDQYGRLPKEVEMIFD 1053 >UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bacterium Ellin514 RepID=B9XRJ1_9BACT Length = 1212 Score = 587 bits (1514), Expect = e-166, Method: Compositional matrix adjust. Identities = 319/739 (43%), Positives = 452/739 (61%), Gaps = 82/739 (11%) Query: 420 DRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINP------DTLIRN 473 D G + +GA GF++ + ++ ++++ G +R RR +P L + Sbjct: 434 DFGLKMHLGALGRGFLNEEAKVVVVTDAEIFGRYKVQR---PRRLKSPHAQATRSALDID 490 Query: 474 LAELHIGQPVVHLEHGVGRYAGM----TTLEAGGI--------TG-EYLMLTYAND---- 516 EL G VVHL+HG+GRY G+ TL G+ +G E L++ YA Sbjct: 491 FTELEEGDYVVHLQHGIGRYQGLKVLPVTLGRKGVDPNATPADSGQECLVIEYAASDPQQ 550 Query: 517 --AKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQ 574 KLYVPV+ HL+S+Y G + L+ +GG W++A+ +A VRDVA+ELL I A Sbjct: 551 PAPKLYVPVTEAHLVSKYVGAGKARPQLNTIGGTRWAKAKAQAERAVRDVASELLAIQAA 610 Query: 575 RAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGK 634 R ++ G++FK D + F +F +E T DQ +AIN DM +P MDRL+CGDVGFGK Sbjct: 611 RESQPGYSFKADTPWQREFESAFLYEETRDQMRAINETKGDMERPKPMDRLICGDVGFGK 670 Query: 635 TEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQ 694 TEVA+RAAF AV KQVA+LVPTT+LAQQHY+ F++R A++P+R+E++SRFRS K + + Sbjct: 671 TEVAIRAAFKAVMEGKQVAILVPTTVLAQQHYNTFKERVADYPMRVELLSRFRSPKNRKR 730 Query: 695 ILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTL 754 +++E+ G +DI+IGTH+L+QSD+ FKDLGL+I+DEE RFGV HKE+ K +R VD+LTL Sbjct: 731 VISELPAGAVDIVIGTHRLIQSDINFKDLGLVIIDEEQRFGVLHKEKFKQIRKLVDVLTL 790 Query: 755 TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYY 814 +ATPIPRTL +A++G RD+S I TPP RL V+T V +YD ++REAI RE+ RGGQVY+ Sbjct: 791 SATPIPRTLYLALTGARDMSTIETPPQDRLPVETIVAQYDERLIREAIQRELNRGGQVYF 850 Query: 815 LYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874 L+N V I A++L LVP ARI +GHGQM+ +LE VM F + +VL+ TTIIE+G Sbjct: 851 LHNRVGTIDAMAQKLRTLVPHARIVVGHGQMKPDDLEEVMTAFINGEADVLLSTTIIESG 910 Query: 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIA 934 +DIP ANT+II+RAD FGL+ L+QLRGRVGR HQAYA+LL P + DA+KR+ A+ Sbjct: 911 LDIPNANTMIIDRADRFGLSDLYQLRGRVGRYKHQAYAYLLLPRHAGLLADARKRISALK 970 Query: 935 SLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGR---- 990 LG+GF +A DLEIRGAG +LG EQSG + +GF LY +LL+ +V ALK + Sbjct: 971 QYSTLGSGFKIAMRDLEIRGAGNMLGPEQSGQITAVGFDLYCQLLKQSVAALKGEKVKPR 1030 Query: 991 -----------------------------------EPSL------------EDLTSQQTE 1003 EP + +++ Q+TE Sbjct: 1031 VEVQVRFDFLALNPGEESAAPERGAKAEAPKRRKAEPEIIIPREVLTYVEYDEVAEQKTE 1090 Query: 1004 VELRM---PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTL 1060 +++ + +P ++ + R+ Y+++A A + LE + EL DRFG LP L Sbjct: 1091 QPMQVEKGSAFIPLSYVSEAKQRIDIYRKLAQATDKAALENLAKELRDRFGTLPPAMELL 1150 Query: 1061 LDIARLRQQAQKLGIRKLE 1079 L + L+ A + I +E Sbjct: 1151 LQVGELKILAGEKNITIIE 1169 Score = 107 bits (266), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 59/151 (39%), Positives = 84/151 (55%), Gaps = 6/151 (3%) Query: 73 WETLPYDSFSPHQDIISSRLSTLYQLPTM---QRGV---LIVPVNTLMQRVCPHSFLHGH 126 WE +P++S PH D+IS RL TL L +RG +I V L+Q+ P S L Sbjct: 107 WEVMPHESKLPHADVISERLETLVALARQSPGKRGAAPHIIANVTALLQKTFPASVLKER 166 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 ++ +G R+ L L+ GY QV + GE A RG +LD++PM S P RL+FF Sbjct: 167 TRMLNRGDRVEPLDLIEWLEEQGYEPEAQVTQKGEIALRGGILDVYPMTSPWPVRLEFFG 226 Query: 187 DEIDSLRVFDVDSQRTLEEVEAINLLPAHEF 217 DE++SLR FD +Q + E++ + L P EF Sbjct: 227 DELESLRYFDPITQISREQIATVTLPPGGEF 257 >UniRef50_B5JG36 Transcription-repair coupling factor n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG36_9BACT Length = 1144 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 316/690 (45%), Positives = 429/690 (62%), Gaps = 36/690 (5%) Query: 427 IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNL---AELHIGQPV 483 +G F+ + LI E++L G R R+ + + + + L AEL G+ V Sbjct: 408 LGKLSWPFLKKTKGCVLITETELFGRRRGRKPPSKSKALVSQSQVDQLLDFAELVDGEFV 467 Query: 484 VHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLH 543 VHL HG+ Y G+T ++ G E L L + L+VP+ HLISRY G ++ L Sbjct: 468 VHLSHGIALYRGITKVDMQGQMREVLSLEFDEGVVLHVPLQESHLISRYVGISKTRPKLG 527 Query: 544 KLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTP 603 K+G + WS+ R+ A D+AA+LL++ A+R G AF D E F SFPF+ TP Sbjct: 528 KIGSNRWSKTREAAERSTLDLAAKLLELQAKRDTGGGHAFALDTEWQTEFEGSFPFKETP 587 Query: 604 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQ 663 DQ +AI DM + + MDRL+CGDVGFGKTEVA+RAAF AV + KQVA+LVPTT+LAQ Sbjct: 588 DQLKAIKESKGDMEKEIPMDRLICGDVGFGKTEVAIRAAFKAVMDDKQVAILVPTTVLAQ 647 Query: 664 QHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 723 QH+ NFRDR A +P+ +E +SRFR E +IL A GK+DILIGTH++LQ DV FKDL Sbjct: 648 QHFLNFRDRMAGYPIVVETVSRFRKPAEVKKILQSTAAGKVDILIGTHRILQKDVSFKDL 707 Query: 724 GLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 783 GL+++DEE RFG++HKE K R+ VDILT++ATPIPRTL MA++G R+LS+I T P R Sbjct: 708 GLVVIDEEQRFGIKHKEVFKEWRSTVDILTMSATPIPRTLYMALTGARELSVIETAPVER 767 Query: 784 LAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHG 843 ++T V+ YD +V E I REI RGGQV+YL+N V+ I A +L +++PE I +GHG Sbjct: 768 KPIQTIVKSYDDALVSEVIRREIARGGQVFYLHNRVQTINTVAAKLEKMLPEVSIGVGHG 827 Query: 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903 QM E++LE VM DF +Q++ VLVCTTIIE+G+DIP NTIIIE AD FGL+QL+QLRGRV Sbjct: 828 QMDEKKLENVMLDFVNQKYQVLVCTTIIESGLDIPNCNTIIIEGADRFGLSQLYQLRGRV 887 Query: 904 GRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQ 963 GR QAYA+LL K + A+KRL AI LGAGF LA DLE+RGAG LLG EQ Sbjct: 888 GRFKRQAYAYLLLHKHKRLMDVARKRLAAIRHHNQLGAGFRLAMRDLELRGAGNLLGSEQ 947 Query: 964 SGSMETIGFSLYMELLENAVDALKAGREPSL------------------------EDLTS 999 SG + +GF LY +LL+ +V LK G +L ED + Sbjct: 948 SGHIVGVGFELYCQLLKQSVARLK-GDATALQIRASVKLDFVYQGEGAMTAANRHEDGFT 1006 Query: 1000 QQTEVELR------MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLL 1053 ++L+ + + +P FI + R+ Y+++A A + ++ E++ + DRFG Sbjct: 1007 VLNRLDLKEGACEPIQARIPATFIDETRLRIDLYRKMALASSVAQVRELREAITDRFGKF 1066 Query: 1054 PDPARTLLDIARLRQQAQKLGIRKLE--GN 1081 P LL + +R A++ IR +E GN Sbjct: 1067 PAEVEALLRLTEVRCLAEQKHIRSVESQGN 1096 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 3/142 (2%) Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 L++ E P D F D I++ L+++ Q + + VL+ L Q V L LV Sbjct: 89 LSEDEDSPVDRFETGSDRIAA-LASIRQ--SNDQLVLVTTPRALAQAVPAVDALTASQLV 145 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 +K GQ + L +L S Y + G++A RG L+D++P+ ++ PYR+DFF DEI Sbjct: 146 LKAGQTHPFEKLVEKLKSLDYDNEGLCEAPGQFARRGGLIDVYPISADTPYRIDFFGDEI 205 Query: 190 DSLRVFDVDSQRTLEEVEAINL 211 D+++ D +QR+ E+I + Sbjct: 206 DAIKELDPVTQRSGAPTESIAI 227 >UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Acidaminococcus RepID=D2RLM5_ACIFE Length = 1092 Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust. Identities = 325/740 (43%), Positives = 455/740 (61%), Gaps = 13/740 (1%) Query: 343 HLPTKAANANLGFQKLPDLAVQAQQKAPL----DALRKFLETFDGPVVFSVESEGRREAL 398 HL T + + F + P + VQ + AP D L+K L+ + + + G R+ Sbjct: 290 HLLTVSDLGHPYFPQAPRIHVQVRAMAPYNKNTDLLQKDLKGWLDQGIHPLIMMGTRDKA 349 Query: 399 GELLARIKIA--PQRIM-RLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVA 455 L +K A P + + G + G+ +GF L+ ESD+ G + Sbjct: 350 AGLAESLKGAGLPMAFAGQFQGVPETGGQVFAGSLTNGFYFWDEKWLLLTESDIFGAQKK 409 Query: 456 RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAN 515 RR +T + +++ G VVH G+GRY G+ T+E G+ +YL L YA Sbjct: 410 RRLT---KTKGKGPALNYFSDIKAGDYVVHDVQGIGRYMGVETIEVNGVHRDYLQLQYAG 466 Query: 516 DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR 575 KL+VPV + L+ +Y G L +G W +A +KA + + +A ELL +YAQR Sbjct: 467 GDKLHVPVEQVGLLHKYVGNEGTPPKLSNMGRKDWQKATRKAQKAITILATELLRLYAQR 526 Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 G AF D + F DSFPFE TPDQ +AI + +DM +P+ M+RL+CGDVG+GKT Sbjct: 527 KITPGHAFAPDTHWQKEFEDSFPFEETPDQLKAIAEIKADMEKPVPMERLLCGDVGYGKT 586 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 EVA+RAAF AV + KQVAVL PTT+LAQQH F R ++ VR+EM+SRFR+ K+Q +I Sbjct: 587 EVAIRAAFKAVMDGKQVAVLAPTTVLAQQHLLTFTQRMGSFGVRVEMLSRFRTPKQQREI 646 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 + VAEGKID+LIGTH++L DV+F DLGLLI+DEE RFGV KE+IK A +D+LTL+ Sbjct: 647 MERVAEGKIDVLIGTHRILNPDVEFHDLGLLIIDEEQRFGVAQKEKIKQRSAGIDVLTLS 706 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYL 815 ATPIPRTL++A+ RD+SII +PP RL V+T+V EYD +VREA+ REI RGG++YY+ Sbjct: 707 ATPIPRTLHLALVKGRDMSIIESPPEDRLPVETYVAEYDDGMVREALEREIRRGGRIYYV 766 Query: 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 +N +E + + A L ELVP I + HG+M E ELE VM F+ F+VL+ TTIIE G+ Sbjct: 767 HNRIEGLSRIAAHLRELVPGITIGLAHGRMTEDELEDVMLGFYQGDFDVLLSTTIIENGL 826 Query: 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 D+P ANTIII+ A++FGL+QL+Q+RGRVGRS AYA+ L + ++ AQKRL+AI Sbjct: 827 DVPLANTIIIDGAENFGLSQLYQMRGRVGRSSRLAYAYFLYKKDRVLSEVAQKRLQAIRD 886 Query: 936 LEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLE 995 +LGAGF +A DLEIRGAG LLG EQ G + +GF LY LLE ++ L+ G + + Sbjct: 887 FTELGAGFKIAMRDLEIRGAGNLLGAEQHGQITGVGFDLYCRLLEKTINTLQNG--GNPD 944 Query: 996 DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPD 1055 + +E+++ + +PDD+I + +L Y R+ K E+ ++ E+IDRFG P Sbjct: 945 EPVPPDPVIEMKLDAYIPDDYIDNPRYKLELYHRLGDMKYEDR-NDLMDEIIDRFGTPPT 1003 Query: 1056 PARTLLDIARLRQQAQKLGI 1075 L +A LR +KL I Sbjct: 1004 QVENLWRVAALRDVCRKLRI 1023 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 53/235 (22%), Positives = 115/235 (48%), Gaps = 4/235 (1%) Query: 19 LGELTGAACATLVAEIAE--RHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETL 76 L LTG+ A + + E + A P+V++ + ++ E++ F + M +L Sbjct: 31 LTGLTGSVKAGFLCALQETVQAAQPLVILTVNRESIRAQRRELAHFYPDLAMRELYPASL 90 Query: 77 PYDSF-SPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 + + ++ +++ R + L + + G++ +Q++ L L + GQ Sbjct: 91 IHGQVDTRNEQVMAERAAALEMIVRKEPGIIFATAEAAIQKLPQPESLVRENLKLAVGQE 150 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 + + + +L AGY +QV G+ A RG +LD+FP+ + R+++FD+ ID+++ F Sbjct: 151 IEQSLVVEKLVKAGYERTEQVDTLGQVAVRGDILDVFPINGKDSVRIEWFDNTIDAMKRF 210 Query: 196 DVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSK 250 D+D+QR++ + + ++P P + + LF+ D V +P +++ K Sbjct: 211 DLDTQRSIGTISQVGIMPL-AVPNQEISASLFQYLSADQLAVLDEPVAFFEECKK 264 >UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWH1_9CLOT Length = 1200 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 299/645 (46%), Positives = 426/645 (66%), Gaps = 6/645 (0%) Query: 428 GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLE 487 G GF + I E D+ G V ++R+ ++T I++ EL +G VVH E Sbjct: 482 GNLHRGFEYPLLKFVFITEGDMFG--VEKKRKRRKKTNYQGKAIQSFTELSVGDYVVHEE 539 Query: 488 HGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGG 547 HG+G Y G+ +E + +Y+ + Y + LY+P + L I +YAG + L+KLGG Sbjct: 540 HGLGIYKGIEKVERDKVIKDYIKIEYGDGGNLYLPATRLESIQKYAGAEAKKPKLNKLGG 599 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607 W++ + + V+++A +L+ +YA R K GF + D + F + FP++ T DQ Sbjct: 600 TEWNKTKTRVRGAVQEIARDLVKLYAARQEKAGFQYGTDTVWQREFEELFPYDETDDQMD 659 Query: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667 AI+AV DM MDRL+CGDVG+GKTEVA+RAAF AV + KQV LVPTT+LAQQHY+ Sbjct: 660 AIDAVKKDMESRRIMDRLICGDVGYGKTEVALRAAFKAVQDSKQVVYLVPTTILAQQHYN 719 Query: 668 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727 F R ++PVR++M+SRF + Q + L ++ +G +DI+IGTH++L D++FKDLGLLI Sbjct: 720 TFVQRMKDFPVRVDMLSRFCTPARQKRTLEDLRKGMVDIVIGTHRVLSKDMQFKDLGLLI 779 Query: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787 +DEE RFGV HKE+IK ++ NVD+LTLTATPIPRTL+M+++G+RD+S++ PP R ++ Sbjct: 780 IDEEQRFGVAHKEKIKHLKENVDVLTLTATPIPRTLHMSLAGIRDMSVLEEPPVDRTPIQ 839 Query: 788 TFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 847 T+V EY+ +VREAI RE+ R GQVYY+YN V +I + A R+ LVP+A + HGQMRE Sbjct: 840 TYVMEYNEEMVREAINRELARNGQVYYVYNRVTDIDEVAGRVQALVPDAVVTFAHGQMRE 899 Query: 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 ELER+M DF + +VLV TTIIETG+DI ANT+II AD GL+QL+QLRGRVGRS+ Sbjct: 900 HELERIMADFINGEIDVLVSTTIIETGLDISNANTMIIHDADRMGLSQLYQLRGRVGRSN 959 Query: 908 HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSM 967 +YA+L+ K + +A+KRL+AI +LG+G +A DLEIRGAG +LG EQ G M Sbjct: 960 RTSYAFLMYKRDKLLREEAEKRLQAIREFTELGSGIKIAMRDLEIRGAGNVLGAEQHGHM 1019 Query: 968 ETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFY 1027 E +G+ LY ++L AV ALK +LE+ S T VE + + +P +I + +L Y Sbjct: 1020 EAVGYDLYCKMLNQAVLALKG---ETLEE-DSYDTVVECDIDAYIPGRYIKNEYQKLDIY 1075 Query: 1028 KRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 KRI++ +TE E +++ EL+DRFG +P LL IA +R A + Sbjct: 1076 KRISAIETEEEYMDMQDELMDRFGDIPRSVENLLKIASIRALAHQ 1120 Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 53/175 (30%), Positives = 107/175 (61%), Gaps = 3/175 (1%) Query: 43 VLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIIS-SRLSTLYQLPTM 101 +++ D A ++D++ FT ++ + A + L + S H ++++ R++ L +L Sbjct: 52 LVVTYDDTRAKEIYDDLRSFTSRVWLYPA--KDLLFYSADIHGNLMARQRIAVLRRLMED 109 Query: 102 QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGE 161 + GV++ ++ LM + P +L ++ ++ GQ + D + +L + GY V QV G+ Sbjct: 110 REGVVVTTMDGLMDHLLPLKYLREQSITVESGQVIDLDVWKERLIAMGYERVAQVDGMGQ 169 Query: 162 YATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHE 216 ++ RG ++D+FP+ E+P R++ +DDE+DS+R FD++SQR++E++E I + PA E Sbjct: 170 FSIRGGIVDIFPLTEEVPVRIELWDDEVDSIRTFDLESQRSVEQLENITIYPAAE 224 >UniRef50_C4LHL4 Transcription-repair coupling factor n=5 Tax=Bacteria RepID=C4LHL4_CORK4 Length = 1281 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 310/672 (46%), Positives = 433/672 (64%), Gaps = 21/672 (3%) Query: 422 GRYLMIGAAEHG-----FVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAE 476 G+ +I A HG VD R L ++ E+D G R+ RR + L+ Sbjct: 505 GKATVIRAVLHGGLVIPHVDDARPLLVVAETDFTGNRIVAYGDGRRRPWRKRNRVDPLS- 563 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAG----GITGEYLMLTYANDAK------LYVPVSSL 526 L+ G VVH HG+GR+ M G EY++L YA + LYVP+ SL Sbjct: 564 LNPGDLVVHETHGIGRFVKMQERTVGKGADATRREYMVLEYAPSKRGGAADHLYVPMDSL 623 Query: 527 HLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 L+SRY GG EN L K+GG W ++KA VRD+AA+L+ +YA+R A G+AF D Sbjct: 624 DLLSRYVGG--ENPSLSKMGGSDWKNTKKKARAAVRDIAADLVQLYAKRQAAPGYAFSPD 681 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 + D+FPF T DQ AI AV DM +P+ MDR++ GDVG+GKTEVA+RAAF AV Sbjct: 682 TPWQREMEDNFPFTETEDQYNAIEAVKEDMEKPVPMDRVIVGDVGYGKTEVAVRAAFKAV 741 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 + KQV +LVPTTLLAQQH+ F +R +P+ I +SRF + K+ ++L +AEG++DI Sbjct: 742 QDGKQVVLLVPTTLLAQQHFATFSERMEGFPITIRQLSRFTTPKQAREVLTGLAEGQVDI 801 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 +IGTH+LLQ+ V++K+LGL+IVDEE RFGV HKE IKA+R++VD+LT++ATPIPRTL M+ Sbjct: 802 VIGTHRLLQTGVQWKNLGLVIVDEEQRFGVEHKEHIKALRSHVDMLTMSATPIPRTLEMS 861 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 M+G+RD+S I TPP R V T+V + + AI RE+LR GQV+Y++N V +I++ A Sbjct: 862 MAGIRDMSTILTPPEDRHPVLTYVGVQEDKQIAAAIRRELLRDGQVFYVHNRVRSIEQVA 921 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 + + ELVPEAR+ + HGQM E +LE + F + ++VLVCTTI+ETG+DI ANT+I+E Sbjct: 922 QHIRELVPEARVVVAHGQMNEDQLENTVEGFWDREYDVLVCTTIVETGLDISNANTLIVE 981 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 A H GLAQLHQLRGRVGRS + YA+ L P + +T + RL IA DLGAG A+A Sbjct: 982 NAHHMGLAQLHQLRGRVGRSRERGYAYFLYPPSQTLTETSYDRLSTIAQNNDLGAGMAVA 1041 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKA---GREPSLEDLTSQQTE 1003 DLE+RGAG +LG EQSG + +GF LY+ L+ AV+A KA G+ D +++T Sbjct: 1042 MKDLEMRGAGNVLGAEQSGHIAGVGFDLYVRLVGEAVEAFKAMADGKPIDGSDKENKETR 1101 Query: 1004 VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDI 1063 +++ + + +P +I RL+ Y+ +A AK E L+ ++ EL+DR+G P LL + Sbjct: 1102 IDINVDAHIPTSYIASERLRLAAYRDLAQAKNEEALQNVRAELVDRYGQPPQEIDRLLAV 1161 Query: 1064 ARLRQQAQKLGI 1075 ARLR ++ G+ Sbjct: 1162 ARLRMVCRECGV 1173 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 129/292 (44%), Gaps = 15/292 (5%) Query: 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADW 73 GE RL A + + IAE+ VV++ + A L E+ V W Sbjct: 63 GEPRLHISAIDEARSWVARAIAEKSV--VVIVTATSREAQDLTAELRDMMGDAVAMFPAW 120 Query: 74 ETLPYDSFSPHQDIISSRLSTL------YQLPTMQR-GVLIVPVNTLMQRVCPHSFLHGH 126 ETLP++ SP + + +RL L + +P Q +++ P + +Q + Sbjct: 121 ETLPHERLSPGSETVGARLKVLRRLAHPHDIPGEQPIRIVVAPARSFIQPIM-KGLGERE 179 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 +++ + ++ + T+L GY+HVD V + GE+A RG ++D+FP +ELP R + + Sbjct: 180 PIILAEDTDVT--GIATRLAEMGYQHVDLVGKRGEFAVRGGVVDIFPSTAELPVRAELWG 237 Query: 187 DEIDSLRVFDVDSQRTLEEVE--AINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHI 244 DEI LR F V QRT+E + A+ + P E D A R T Sbjct: 238 DEISDLRAFSVGDQRTIENFDPGAVPVYPCRELRIDDAVRARAEKMAR-THASNATLADA 296 Query: 245 YQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQ 296 ++S+G G+E P+ F P+ L A V T L S E+ Q Sbjct: 297 LTKISEGVAVEGMESLIPVLFDGPMVTLPEEVAAADPSVTTTVLVMSPEKVQ 348 >UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSM6_9FIRM Length = 1157 Score = 585 bits (1507), Expect = e-165, Method: Compositional matrix adjust. Identities = 280/605 (46%), Positives = 406/605 (67%), Gaps = 5/605 (0%) Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 I N +LH+G VVH HG+G+Y G LE GI +Y+++ Y D KL++P+ SL LI Sbjct: 488 ILNFEDLHVGDYVVHESHGIGKYIGTEQLEVSGIKRDYVVIKYFGDDKLFLPIESLDLIY 547 Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 +Y G ++ L+KL W++ ++KA + + D+A +L+ +YA R +K GF F D Sbjct: 548 KYTGDEKKAPKLNKLNSIEWNKTKRKAKKSIDDMADDLIKLYAARESKNGFKFSKDSSFQ 607 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 + F D+F +E T Q + + DM + MDRL+C DVG+GKTEVA+RAAF A+ + K Sbjct: 608 REFEDAFIYEETDGQLLSSEEIKKDMEEAHPMDRLLCADVGYGKTEVALRAAFKAILDGK 667 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 QVA LVPTT+LAQQHY+ +RF ++PV + ++SRFR+ KEQ + + ++ G +DI++GT Sbjct: 668 QVAFLVPTTILAQQHYNIMVERFKDFPVEVGILSRFRTKKEQKETIEKLKAGIVDIVVGT 727 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H+LL DV FKDLGLLI+DEE RFGVRHKE++K ++ N+D LTL+ATPIPRTL M+M G+ Sbjct: 728 HRLLSKDVVFKDLGLLIIDEEQRFGVRHKEKLKMLKENIDTLTLSATPIPRTLQMSMIGI 787 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 RD+S+I PP R VKT+V EY+ ++VREAILRE+ RGGQVY++YN V N++ + L Sbjct: 788 RDMSVIEEPPEERFPVKTYVLEYNPLMVREAILREVERGGQVYFVYNRVANMEYKLQELR 847 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 ELVPE + +GQM E++LE M F +VL+C+TIIETG+D+ ANT+II ++ Sbjct: 848 ELVPEVSFVMANGQMNEKDLEDTMLSFLRGDVDVLLCSTIIETGMDVQNANTMIITDSNR 907 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 GL+QL+QLRGR+GRS AYA+ +++ AQKRL+ I + G+GF +A DL Sbjct: 908 LGLSQLYQLRGRIGRSSRVAYAYFTYEKDVSISEIAQKRLKTIKEFTEFGSGFKIALRDL 967 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS 1010 EIRG+G +LG +Q G ++ IG+ LYM+ L AV+ LK +E + +T ++L++ S Sbjct: 968 EIRGSGSILGSKQHGHIDNIGYDLYMKYLTQAVNKLKG-----IETRETIETVIDLKIDS 1022 Query: 1011 LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQA 1070 +P +I D RL YK+I+ ++E E ++ ELIDRF LP L+DI+ LR +A Sbjct: 1023 YIPKTYIEDERLRLEIYKKISVLESEKEYSDLIDELIDRFSDLPKEVVNLMDISLLRYKA 1082 Query: 1071 QKLGI 1075 K+ + Sbjct: 1083 SKINV 1087 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/192 (21%), Positives = 96/192 (50%), Gaps = 2/192 (1%) Query: 23 TGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFS 82 T C + + +++IA + +A + ++++ + V+ + + YD S Sbjct: 34 TEGFCGIFSYALFRKLNKKLLIIAENRLSARKYYEDLFNISPLRVLLYPEKDIFLYDRDS 93 Query: 83 PHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALR 142 +D + +RL T+ ++ T +++ + L ++ + L ++K + + +L Sbjct: 94 KSRDNLKTRLGTISKILTDDWDIIVTTLRALGDKISARDVFLKNTLTLEKSKDIDIKSLN 153 Query: 143 TQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRT 202 +L GY QV G+++ RG ++D+ YR++ FD EIDS+R F+++SQR+ Sbjct: 154 AKLLQMGYERYPQVEGMGQFSIRGNIIDIATFSDN--YRIELFDTEIDSIRTFELESQRS 211 Query: 203 LEEVEAINLLPA 214 ++ ++++ + P Sbjct: 212 IDFIDSVKIFPT 223 >UniRef50_C9LF18 Transcription-repair coupling factor n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LF18_9BACT Length = 1143 Score = 582 bits (1500), Expect = e-164, Method: Compositional matrix adjust. Identities = 352/1017 (34%), Positives = 543/1017 (53%), Gaps = 83/1017 (8%) Query: 104 GVLIVPV-NTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEY 162 G IV L RV + + +V+++ AL +L G++ D V E G++ Sbjct: 127 GTCIVTFPAALATRVAAKADMAAKTIVIEEEGHYDLTALEERLLEFGFKRKDYVYEPGDF 186 Query: 163 ATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKA 222 A RG++LD++ SE P+R+DFF D++DS+R F+V +Q + E ++A+ ++P + T Sbjct: 187 AVRGSILDVYSFASEFPFRIDFFGDDVDSIRSFEVQTQLSKERLQAVTIVPDVD-ATGGD 245 Query: 223 AIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLL 282 + + + R+PE+I ++ Sbjct: 246 NVAFTDYLPESSLVITREPEYIRDVIN--------------------------------- 272 Query: 283 VNTGDLETSAERFQADTLARFEN-RGVD-PMRPLLPPQS------LWLRVDELFSELKNW 334 N D + E + A +E R D P L PQ+ L ++ DE++ L+ + Sbjct: 273 -NIYDEGFTREAAMSGEWAAYEGERDTDLPQADLPTPQAEPDKAKLLVKGDEIYDRLRAF 331 Query: 335 PRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGR 394 P L P A A + F P A +L+ + + + +S + Sbjct: 332 PNFLLAQGTTP---AAAKIQFHTTPQPIFHKNFDLVQRAFSDYLDQ-NYTIYITADSRKQ 387 Query: 395 REALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEH-GFVDTVRNLALICESD-LLGE 452 ++ L ++LA E + + H GF D NL + C +D + + Sbjct: 388 QQRLADILA-------------EKGGNSTFTPVDQTLHAGFSD--ENLRICCFTDHQIFD 432 Query: 453 RVARR--RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAG-GITGEYL 509 R + R D R + L + H G +VHL+HGVGR+AG+ + A G E + Sbjct: 433 RYHKYSLRSDHARDAKMALTLNELLQFHPGDYIVHLDHGVGRFAGLVRVPAADGSQQEMI 492 Query: 510 MLTYANDAKLYVPVSSLHLISRYAGGAEENAPLH--KLGGDAWSRARQKAAEKVRDVAAE 567 LTY +D + V + +LH +S+Y G E P H +LG AW + + + +K++D+A Sbjct: 493 KLTYQHDDIVLVSIHALHKLSKYKG--REGTPPHLSRLGTGAWEKMKDRTKKKIKDIARN 550 Query: 568 LLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 L+ +Y+QR ++G+AF D Q SF +E TPDQ + V +DM MDRLVC Sbjct: 551 LIKLYSQRKEEKGYAFSADSFLQQELEASFTYEDTPDQLKVTQEVKADMESLRPMDRLVC 610 Query: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 GDVGFGKTE+A+RAA A ++KQVAVLVPTT+LA QHY F +R +PVR+ +SR + Sbjct: 611 GDVGFGKTEIAVRAALKAAVDNKQVAVLVPTTVLALQHYRTFAERLKGFPVRVAYLSRAK 670 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 SAKE IL ++AEG I+I++GTHKL+ V+F+DLGLLI+DEE +FGV KER++ ++ Sbjct: 671 SAKETKSILHDLAEGHINIIVGTHKLIGKTVRFQDLGLLIIDEEQKFGVAVKERLRELKV 730 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL 807 NVD LT++ATPIPRTL ++ G RDLS+I TPP R ++T + ++ ++ EA+ E+ Sbjct: 731 NVDTLTMSATPIPRTLQFSLMGARDLSVIQTPPPNRRPIQTEIHTFNHEIIAEAVNFEMS 790 Query: 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 R GQV+ + N V ++ + + VP+AR+ +GHGQM ELE+++ DF + ++VL+ Sbjct: 791 RNGQVFIVTNRVASLGSLKALVEKYVPDARVVVGHGQMAPAELEKIILDFVNYDYDVLIS 850 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 TTI+E GIDIP ANTI+I+ A FGL+ LHQ+RGRVGRS +A+ +LL P + DA+ Sbjct: 851 TTIVENGIDIPNANTILIDAAHTFGLSDLHQMRGRVGRSSQKAFCYLLAPPLSILKDDAR 910 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK 987 +RL+AI DLG+G +A DL+IRGAG LLG EQSG + +G+ Y ++L AV LK Sbjct: 911 RRLQAIEEFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGFIADLGYETYQKILAEAVSELK 970 Query: 988 AGREPSLE-----------DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTE 1036 + L D + VE + + P+ ++P R+ Y+ + + Sbjct: 971 SEEFADLYADSLKKTNLTGDFFVDECNVECDLHAFFPETYVPGATERMMLYRELDGLTAD 1030 Query: 1037 NELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKN 1093 ++L + + DRFG LP LL I LR+ +KLG K+ ++ + F K Sbjct: 1031 DQLAAFRKRMEDRFGKLPPEGDELLAIVPLRRSGRKLGAEKITLKQRRMTLYFISKT 1087 >UniRef50_Q5PBQ9 Transcription repair coupling factor n=7 Tax=Anaplasma RepID=Q5PBQ9_ANAMM Length = 1152 Score = 582 bits (1499), Expect = e-164, Method: Compositional matrix adjust. Identities = 351/1034 (33%), Positives = 568/1034 (54%), Gaps = 55/1034 (5%) Query: 67 VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG-VLIVPVNTLMQRVCPHSFLHG 125 V L W+++P+ SP ++++R+ L + + V++ + Q+V P + Sbjct: 87 VFILPKWDSIPHKGVSPSSLVMATRMKCLLDVSNAKAPYVMLTTSGAVAQKVLPAHSVAS 146 Query: 126 HALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFF 185 A+ + G LS DAL L + GY V E G +A RG ++D+F P R+DF Sbjct: 147 AAITVAPGDGLSMDALVQHLVACGYTQSSAVREVGSFAVRGEIVDIFQPIDNKPTRIDFC 206 Query: 186 DDEIDSLRVFDVDSQRT-LEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHI 244 D ++S+R FD+D+Q T + ++ + PA E + + F +++ + DP Sbjct: 207 YDAVESIRYFDLDTQITDGGALPSLVIYPASEVIKTEENLNRFYTRYMQQYP-NPDPAFA 265 Query: 245 YQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFE 304 +S+ G E W PL ++ L +F Y P L++ E R + + Sbjct: 266 EAMLSRQKC-MGEEQWLPLLQADELSTIFDYVPNAKLVLAEQASEEVLRRLEGAQEEDYT 324 Query: 305 NRGVDPMRPLLPPQSLWLRVDELF-----------SELKNWPRVQLKTEHLPTKAANANL 353 + L ++++ F SE W EH +++N+ Sbjct: 325 AQSATGKSALFLDLQGYIQITRSFHKAIFCRFDATSENNLW-------EHQQVICSSSNI 377 Query: 354 GFQKLPDLAVQAQ-QKAPLDALRK-FLETFDGPVVFSVESEGRREALGELLARIKIAPQR 411 G +P+ + AQ QKA + A+ ++ + ++ + SEG +L + + K Sbjct: 378 G--AVPNFRLLAQEQKADVFAVAADYINSAHKTLILACYSEG---SLLYFIDKFKAHGIH 432 Query: 412 IMRLDEASDRGRYLMIGAAEHGFVDT-----VRNLALICESDLLGERVARRRQDSRRTIN 466 I R+ E + IGA + T + +I E LL + A R S ++ Sbjct: 433 ISRVHEYAGP-----IGAFNAAVLPTSCDVVTHDFIVITEYSLLKRQCAAGRS-SGTVVS 486 Query: 467 PDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSL 526 DT L +G VVH ++GVG + + TL G +++ + Y N+ K +VPV + Sbjct: 487 EDTC------LAVGDVVVHKDYGVGIFNALRTLSVCGHLHDFVEILYRNNDKFFVPVEDI 540 Query: 527 HLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 LI++Y G + L KLG +W K ++++D+A LL A R EG F + Sbjct: 541 DLITKY--GTNTDVVLDKLGSTSWQERSAKLKKRIKDIAQTLLHSEAMRVLAEGNKFLAN 598 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 ++Y FC FP+ T DQ +AI+ V D+ MDRL+CGDVGFGKTEVA+RAAFL + Sbjct: 599 -QRYLDFCKEFPYVETEDQLKAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVI 657 Query: 647 --DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 D KQVAV+VPTTLL +QH FR+RF N+ + ++ ++R SA +++++ + G I Sbjct: 658 NEDPAKQVAVIVPTTLLCRQHLAAFRERFQNYDINVQQLAR-SSATQKSKVKKALENGDI 716 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 +I+IGT LL D++F DL LLI+DEE FGV+ KE++K +R +V +L+L+ATPIPRTL+ Sbjct: 717 NIIIGTSALLAEDIRFLDLSLLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLH 776 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 M++SG+++LS++ TPP R+AV + +YD +++ AIL E+ RGG+V++ + +I Sbjct: 777 MSLSGIKNLSVLRTPPMGRMAVDIAIIQYDGNIIKTAILDEVSRGGRVFFTCPFISDIDG 836 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 L +LVP ++ + HG+ R L+++MNDF +F+VL+ T+IIE+GIDIP ANTII Sbjct: 837 VLADLQKLVPNVKVEVAHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTII 896 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 + AD FGLAQL+QL+GRVGRS + YA+ + + KRLEA+ SL +G+GFA Sbjct: 897 VHNADMFGLAQLYQLKGRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVRSLNSVGSGFA 956 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 LA D+++RG G L+GEEQSG+++ +G LY ++LE A+ A + +P ++ +V Sbjct: 957 LALQDMDMRGFGNLVGEEQSGNIKEVGIELYHKMLEEAIAACQ--EQPHIQ-AGCHSVKV 1013 Query: 1005 ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA 1064 + +P+ +I +++ R+ YK+I+S KT E + VEL++RFG P LL++ Sbjct: 1014 GVDANVRIPESYIRELDLRIRVYKKISSLKTAEEADTCFVELVNRFGAPPPEVMNLLNVM 1073 Query: 1065 RLRQQAQKLGIRKL 1078 R++Q LGI+++ Sbjct: 1074 RIKQLCSALGIQEV 1087 >UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C986_9FIRM Length = 1150 Score = 581 bits (1497), Expect = e-164, Method: Compositional matrix adjust. Identities = 281/618 (45%), Positives = 410/618 (66%), Gaps = 9/618 (1%) Query: 474 LAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYA 533 +E+ G VVH +G+GRY GM +EAGG+ +YL + +A + KLYV + ++L+S+Y Sbjct: 481 FSEITKGDYVVHETYGIGRYLGMVNMEAGGLYNDYLEIEFAGNDKLYVIANKMNLVSKYI 540 Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 G ++ L+KLG W + K + V+++A E + +YA+R +GFAF D + F Sbjct: 541 GSSDAPPKLNKLGSQVWENTKNKTRKAVKELAKEYITLYAKRREIKGFAFSADTPWQKEF 600 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 D+F +E T DQ + + V DM +P MDRL+CGDVGFGKTEVA RA F AV + KQ A Sbjct: 601 EDNFGYELTEDQERCVREVKEDMEKPYPMDRLICGDVGFGKTEVAARAIFKAVMDGKQCA 660 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 VLVPTT+LA QHY+ F +RF ++PV+IEM+SRF++ KE+ +I+ ++ GK+DI+IGTHKL Sbjct: 661 VLVPTTILAMQHYNTFVERFKDFPVKIEMLSRFKTKKEENRIIDKLERGKVDIVIGTHKL 720 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 L +V FKDLGLL+VDEE RFGV HK+++K ++ NVD LTL+ATPIPRTLNM++ G+RDL Sbjct: 721 LSDNVNFKDLGLLVVDEEQRFGVAHKDKLKLLKENVDTLTLSATPIPRTLNMSLIGIRDL 780 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 S I PP R +T+V EYD ++++AI RE+ RGGQV+++YN V+N +K +L +L+ Sbjct: 781 STIEKPPKEREETETYVIEYDDYIIKDAINRELSRGGQVFFVYNSVKNAEKTCLKLRKLI 840 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 P ++ +GQM ERELE+ M F ++ F+VLVCT I+E G++I ANT+II+ ++ GL Sbjct: 841 PGLKVEFANGQMPERELEKTMFRFLNKEFDVLVCTAIVENGLNILNANTMIIKEGNNLGL 900 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 +QL+QLRGRVGRS+ AY ++ KA+ A KRL+AI G+GF +A DL+IR Sbjct: 901 SQLYQLRGRVGRSNKNAYCYVTYEKDKALNEVAMKRLKAINEFTKFGSGFQIAIRDLQIR 960 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALK--AGREPSLEDLTSQQTEVELRMPSL 1011 G+G LLG QSG +G+ LY ++L+ A+ K A +EP +T + +++ + Sbjct: 961 GSGNLLGANQSGHFTNVGYELYTKMLQEALKESKGEAQKEPV-------ETTINIKINAY 1013 Query: 1012 LPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQ 1071 + +I D R+ YK IAS +TE + +E+ LID +G + L+DI+ LR +A Sbjct: 1014 IDKKYIEDEKQRIITYKEIASIETEADKDEMVENLIDIYGDIRKETLNLMDISLLRNKAS 1073 Query: 1072 KLGIRKLEGNEKGGVIEF 1089 K I + NE+ I F Sbjct: 1074 KKDILSINVNEENREIYF 1091 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/156 (26%), Positives = 79/156 (50%), Gaps = 4/156 (2%) Query: 82 SPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR-LSRDA 140 S ++ + R++ + + +++ +N +++ F +++ KK + L D Sbjct: 91 SHSMELTNKRVNVIKNAVMGSKKIIVTSINAAIEKGL---FWGKDSIITKKTEDILDIDE 147 Query: 141 LRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ 200 L+ GY +V G Y+ +G ++D+F MG E+P R++FFDDEIDS+R FD ++ Sbjct: 148 FIEILNKFGYAREYEVTGQGAYSVKGGIVDVFIMGDEVPVRIEFFDDEIDSIRTFDKNTG 207 Query: 201 RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE 236 +++E++ L+PA D I + R E Sbjct: 208 KSIEKINKFTLVPAKTSLLDYDEINKLNKKVRAKLE 243 >UniRef50_A1ZRM8 Transcription-repair coupling factor n=2 Tax=Bacteroidetes RepID=A1ZRM8_9SPHI Length = 1137 Score = 580 bits (1494), Expect = e-163, Method: Compositional matrix adjust. Identities = 304/694 (43%), Positives = 441/694 (63%), Gaps = 16/694 (2%) Query: 433 GFVDTVRNLALICESD-LLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVG 491 GFVD V +C +D + ER R R R + + ++ L L+ G V H+++GVG Sbjct: 419 GFVDHVNRF--VCYTDHQIFERFHRYRAGKRHSKSKALTMKALKALNPGDYVTHVDYGVG 476 Query: 492 RYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWS 551 R+AG+ +EA G E + L Y +D LYV + SLH IS+Y+G +HKLG W Sbjct: 477 RFAGLEKVEANGKVQEAVRLVYRDDDLLYVSIHSLHKISKYSGKDSAPPKVHKLGSPEWE 536 Query: 552 RARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINA 611 +++ ++V D+A +L+++YA+R + GFAF D SF +E TPDQA+A Sbjct: 537 TKKKRVKKRVLDIAEDLIELYAKRKSAPGFAFSQDSFLQAELESSFIYEDTPDQAKATAD 596 Query: 612 VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRD 671 V +DM Q MDRLVCGDVGFGKTEVA+RAAF AV + KQVA+LVPTT+LA QHY F++ Sbjct: 597 VKADMEQNSPMDRLVCGDVGFGKTEVAIRAAFKAVYDGKQVAILVPTTILALQHYKTFKN 656 Query: 672 RFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEE 731 R +P IE I+RF+++K+ L EV EGK+DILIGTH+++ DV+FKDLGLL++DEE Sbjct: 657 RLEKFPCNIEYINRFKTSKQIKATLKEVNEGKVDILIGTHRIVNKDVQFKDLGLLVIDEE 716 Query: 732 HRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVR 791 +FGV+ KER+K MR NVD+LTLTATPIPRTL+ ++ G RDLSII TPP R V T Sbjct: 717 QKFGVKTKERLKEMRVNVDVLTLTATPIPRTLHFSLMGARDLSIIQTPPLNRQPVTTEQH 776 Query: 792 EYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELE 851 ++ V+R+AI E+ RGGQV++++N V++I A + +LVP+A + + HGQM +LE Sbjct: 777 TFNDEVIRDAISFELRRGGQVFFVHNRVKDIISIANNVLKLVPDAHVGVAHGQMEGPKLE 836 Query: 852 RVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAY 911 + M F ++VL+ T IIE G+D+P ANTIII+ A FGLA LHQ+RGRVGRS+ +AY Sbjct: 837 KTMMKFIEGEYDVLISTNIIEAGLDVPNANTIIIDMAHTFGLADLHQMRGRVGRSNRKAY 896 Query: 912 AWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIG 971 +LL P + ++++RL A+ DLG GF +A DL+IRGAG LLG EQSG + +G Sbjct: 897 CYLLAPASTLLNVESRRRLSALEEFSDLGDGFKIAMRDLDIRGAGNLLGAEQSGFISDLG 956 Query: 972 FSLYMELLENAVDALKAGR-------EPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRL 1024 F +Y ++L+ A+ LK + E +++++ + +E + L+P++++ ++ RL Sbjct: 957 FEMYHKVLDEAIQELKETKFRELFESELAIKEIKTDCV-IETDLAILIPENYVTNITERL 1015 Query: 1025 SFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL---EGN 1081 S Y + + K EL + K+ + DRFG P L++ +LR +A++LG+ KL G Sbjct: 1016 SLYTTLDNIKETEELNKFKISVQDRFGNPPSEVNDLIETVKLRWEAERLGMTKLTLKNGA 1075 Query: 1082 EKGGVIEFAEKNHVNPAW--LIGLLQKQPQHYRL 1113 KG + + + +I LQ+ PQ RL Sbjct: 1076 MKGYFNSENDDYFKSDTFGKIIRYLQQNPQKTRL 1109 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 39/116 (33%), Positives = 71/116 (61%), Gaps = 1/116 (0%) Query: 99 PTMQRGVLIVPV-NTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVM 157 PT Q G +IV + L+++V L + + G+++ + L L + + D V Sbjct: 140 PTNQEGFMIVTYPSALVEKVINKRSLLENTFTAEVGEKVDIEFLAEILHTYDFDKTDFVY 199 Query: 158 EHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLP 213 E G+++ RG ++D+F ++ PYRL+FFDDE++S+R+FD +SQ ++E+V I ++P Sbjct: 200 EAGQFSIRGGIVDIFSYSNDYPYRLEFFDDELESIRLFDPESQLSIEQVSQIAIIP 255 >UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VP19_9CLOT Length = 1149 Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust. Identities = 306/656 (46%), Positives = 432/656 (65%), Gaps = 12/656 (1%) Query: 428 GAAEHGFVDTVRNLALICESDLLGE-RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 G+ GF N ALI + AR+RQ + + I +L+EL G +VH Sbjct: 447 GSLSAGFEYPTANFALITHGHFAAAPKRARKRQKNAKEIY------SLSELAPGDYIVHS 500 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEE-NAPLHKL 545 HGVG + G+ LE G+T +YL + YA LYVPV+ L ++S+Y G EE L++L Sbjct: 501 AHGVGVFEGIHKLEMQGVTKDYLKVRYAKGDILYVPVTQLDMVSKYIGPKEEVKVRLNRL 560 Query: 546 GGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQ 605 GG W +A+ + V+D+A EL+ +YA+R +G AF D + F F +E T DQ Sbjct: 561 GGQDWQKAKARVRSAVKDIAKELIKLYAERMKLKGHAFPPDTGWQRDFESRFEYEETEDQ 620 Query: 606 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 665 + I + DM + MDRL+CGDVGFGKTEVA+RAAF V + KQ A+LVPTT+LA QH Sbjct: 621 LRCIQEIKEDMEKEQPMDRLLCGDVGFGKTEVALRAAFKCVTDSKQCALLVPTTILAWQH 680 Query: 666 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 725 Y RF +P+++E++SRFR+ K+Q +IL ++ G+ID++IGTH+L+Q DV+F+DLGL Sbjct: 681 YQTVTQRFEGFPIKVEILSRFRTPKQQAEILKQLKRGEIDMIIGTHRLVQKDVQFRDLGL 740 Query: 726 LIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785 +I+DEE RFGV KER K++ NVD+LTL+ATPIPRTLNMA+SG+RD+S + P R Sbjct: 741 VIIDEEQRFGVAQKERFKSVTKNVDVLTLSATPIPRTLNMALSGIRDMSSLEEAPQDRHP 800 Query: 786 VKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQM 845 V+T+V EYD V+ +A+ RE+ RGGQVYYL+N VE+I++ A RL +PEA++ GHG+M Sbjct: 801 VQTYVLEYDQAVINDAVRRELRRGGQVYYLHNKVESIERVAARLQAQIPEAKVGFGHGKM 860 Query: 846 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 905 E EL V Q NVLVCTTIIETG+D+P NTIIIE ADH GL+QLHQ+RGRVGR Sbjct: 861 PEGELSEVWRRVMEQEINVLVCTTIIETGVDVPNVNTIIIEDADHMGLSQLHQIRGRVGR 920 Query: 906 SHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 S +AYA+L K ++ +QKRL AI + G+GF +A DLE+RGAG +LG EQ G Sbjct: 921 SSRRAYAYLTFTRNKVLSEISQKRLAAIREFTEFGSGFKIAMRDLELRGAGNILGGEQHG 980 Query: 966 SMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLS 1025 MET+G+ +Y+ LL AV K G E S +L + V++++ + +P+ +I ++ RL Sbjct: 981 HMETVGYDMYLRLLGEAVSEEK-GEEASSYEL---ECLVDVQVQAHIPEGYIESLSQRLE 1036 Query: 1026 FYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGN 1081 Y+RI+ +++++ ++ ELIDRFG P + L+D+A +R A LGI +++ N Sbjct: 1037 IYRRISDIRSQDDAMDVLDELIDRFGEPPASVKGLIDVALIRNTAASLGIYEIKQN 1092 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 72/279 (25%), Positives = 119/279 (42%), Gaps = 24/279 (8%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF-TDQMVMNLADWETLPYDS 80 ++G A L+ + R +++A D RL +++S T +V D+ + Sbjct: 33 VSGIHKAHLIHSLCARTGRKALVLASDEGEGQRLCNDLSSMGTAALVYPARDFNFRAAEG 92 Query: 81 FS---PHQ--DIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 S HQ +++ L YQ V+I ++ +Q P L L ++ GQ Sbjct: 93 QSREYEHQRLQVMAGMLDGDYQ-------VVISCIDAALQYTIPPDELRSKRLTLRAGQE 145 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 + + L ++GY QV G++A RG +LD F + P R++F+ DEID+L F Sbjct: 146 APLEKIEALLSASGYERYQQVEGPGQFAVRGGILDFFTPDASAPVRVEFWGDEIDTLCYF 205 Query: 196 DVDSQ-RTLEEVEAINLLPAHEFPTDKAA-----IELFRSQWRDTFEVKRDPEHIYQ--- 246 D ++Q RT + +E I L P+ E IE + R V R E + Q Sbjct: 206 DPETQRRTDDPLEEITLAPSTEVLVSSPGSLAKKIERLSAGLRGKTAV-RAKERLAQEAD 264 Query: 247 QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNT 285 Q+ G P + + PL + P L Y L+ + Sbjct: 265 QLLAGKRPGSADKFLPLLYPSP-ATLLDYLEPEALVFQS 302 >UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax=Actinobacteridae RepID=C7MC76_BRAFD Length = 1211 Score = 578 bits (1490), Expect = e-163, Method: Compositional matrix adjust. Identities = 311/677 (45%), Positives = 435/677 (64%), Gaps = 22/677 (3%) Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 + +G G VD L L E DL G+ ARR ++ + ++ L +L G VV Sbjct: 461 VTVGPFAEGLVDEDLQLILAAERDLTGKSGARRGEERKMPSRRRNVVDPL-QLRPGDHVV 519 Query: 485 HLEHGVGRYAGMTTLEAGG----ITGEYLMLTYANDAK------LYVPVSSLHLISRYAG 534 H HGVGR+ MT G T EYL++ YA K LYVP L +++Y G Sbjct: 520 HAHHGVGRFVEMTRRAVGSGAKRTTREYLVIEYAPSKKGQPGDRLYVPSDQLDQVTKYVG 579 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 G E + ++++GG W++ + KA + +R++A EL+ +Y+ R + G AF D + Sbjct: 580 GEEPS--VNRMGGADWAKTKSKARKAIREIADELVRLYSARQSAPGHAFGPDTPWQRELE 637 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 DSF F TPDQ I+ V +DM + + MDRL+ GDVG+GKTE+A+RAAF AV + KQVAV Sbjct: 638 DSFEFVETPDQLVTIDDVKADMEKSVPMDRLILGDVGYGKTEIAVRAAFKAVQDGKQVAV 697 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 L PTTLLAQQH D F +R+ +PV + +SRF++ + + + +G +DI+IGTH+LL Sbjct: 698 LAPTTLLAQQHLDTFAERYTGFPVTVRGLSRFQNPADSEATVEGLRDGSVDIVIGTHRLL 757 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 +V+FKDLGLLIVDEE RFGV HKE +KA+R NVD+L+++ATPIPRTL MA++G+R+LS Sbjct: 758 TGNVRFKDLGLLIVDEEQRFGVEHKETLKALRTNVDVLSMSATPIPRTLEMAVTGIRELS 817 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 I+ATPP R V T+V + V AI RE+LR GQV+Y++N VE+I + A L ELVP Sbjct: 818 ILATPPEERHPVLTYVGAQEDKQVTAAIRRELLREGQVFYIHNRVEDIDRVAAHLRELVP 877 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 +AR+ + HG+M E +LERV+ DF + F+VLVCTTI+ETG+DI ANT+I+E AD FGL+ Sbjct: 878 DARVQVAHGKMNEHQLERVLIDFWERDFDVLVCTTIVETGLDISNANTLIVENADRFGLS 937 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QLHQLRGRVGRS +AYA+ L K +T A RL +A+ DLGAG +A DLEIRG Sbjct: 938 QLHQLRGRVGRSSERAYAYFLYNATKPLTELAHDRLTTLATNTDLGAGMQVAMKDLEIRG 997 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKA-GREPSLEDLTSQQTEVELRMPSLLP 1013 AG LLG EQSG + +GF LY+ ++ AV A + GR P ++ VEL + + +P Sbjct: 998 AGNLLGGEQSGHIAGVGFDLYVRMVGEAVAAFRGEGRAP------EKEIRVELPLDAHVP 1051 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKL 1073 D+I RL Y ++++ + +E+ +I+ EL DR+G P P LLD+AR R A+ Sbjct: 1052 HDYIGSERLRLEAYSKLSAVREVSEIAQIRAELTDRYGTPPAPVEVLLDVARFRIDARTA 1111 Query: 1074 GIRKLEGNEKGGVIEFA 1090 GI +++ +G +I FA Sbjct: 1112 GIDEVQA--QGKMIRFA 1126 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 59/182 (32%), Positives = 92/182 (50%), Gaps = 8/182 (4%) Query: 30 LVAEIAERHAG--PVVLIAPDMQNALRLHDEISQFTD-QMVMNLADWETLPYDSFSPHQD 86 LVA++A R P+V++ + L +S + ++ L WETLP++ SP D Sbjct: 59 LVADLARRATAEQPLVIVTATTRATEDLRAALSALVGTEHLVELPAWETLPHERLSPRAD 118 Query: 87 IISSRLSTLYQLPTMQR----GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALR 142 ++ RLSTL ++ + V+++PV +L+Q + + G + L Sbjct: 119 TVAKRLSTLRRIAHPESEDPAHVVLMPVRSLLQPIA-KGLGELRPVRAAVGDTYPLEDLE 177 Query: 143 TQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRT 202 L A Y VD V + GE+A RG +LD+FP P R+D F DEID +R F V QR+ Sbjct: 178 RDLTGAAYARVDMVEKRGEFAVRGGILDVFPPTEPHPVRVDLFGDEIDDVRYFSVADQRS 237 Query: 203 LE 204 L+ Sbjct: 238 LD 239 >UniRef50_B1ZYU7 Transcription-repair coupling factor n=2 Tax=Opitutaceae RepID=B1ZYU7_OPITP Length = 1205 Score = 578 bits (1489), Expect = e-163, Method: Compositional matrix adjust. Identities = 386/1064 (36%), Positives = 552/1064 (51%), Gaps = 150/1064 (14%) Query: 10 PVKAGEQRLLGELTGAACATLVAEIAERHAGPV-VLIAPDMQNALRLHDEISQFTDQMVM 68 P +L G +T +A ++ E+ RH PV +++A D++ A RL ++ + F + Sbjct: 4 PATRARHKLTG-ITPSAQGAVLTELTLRHPAPVWIVVAADLKAAERLAEDAAFFHGAAQL 62 Query: 69 -----NLADWETLP-----YDSFSPHQD--IISSRLSTLYQLPTM---------QRG--- 104 L E++P ++F+ D + S+L L +RG Sbjct: 63 PHAQTTLVFPESMPDAGDMREAFAASNDRFTVLSKLRATRSLGVATSSEVGGARRRGGAT 122 Query: 105 -----VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEH 159 V++ L+Q V + +GQ S L +L Y Sbjct: 123 ALPPLVIVTTPGALLQPVPALEEFATREFTLSRGQTQSFQGLLERLQQLDYDSEAVCEAP 182 Query: 160 GEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT 219 G YA RG ++D++P+ + PYRLDFF DEI+++R FD +QR+ VE+I + + Sbjct: 183 GHYAIRGGIIDVYPVTANTPYRLDFFGDEIEAIREFDPVTQRSGATVESITISASSRVRL 242 Query: 220 DKAAIELFRSQWRDTFEVKRDPEHIYQQVSK---------GTLPAGIEYWQPLFFSEPLP 270 D + + T V +P + +++S+ G P G+E P+ Sbjct: 243 DPSKTGIADYLSPRTHLVLIEPAALEEKLSQLAREADGATGVPPVGLESAA----VSPVH 298 Query: 271 PLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSE 330 PL + + DL+ +A A E+ D S W E S Sbjct: 299 PLNALLGKCAAIFGVSDLDEAA--------ALLEDADDD---------STW--DSESLSH 339 Query: 331 LKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETF-----DGPV 385 +++P L Q + + DA R+FL+ G Sbjct: 340 HRHYPE----------------------DALVAQERLQVEEDARRRFLQQVAAWRQSGFA 377 Query: 386 VFSVES-EGRREALGELL---ARIK-IAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVR- 439 VF V S EG + + E+L A++K I PQ + G GF T R Sbjct: 378 VFLVVSKEGEEQRIREILQEDAKLKRIQPQ--------------FLRGTLNEGFRITFRG 423 Query: 440 ---------------------------NLALICESDLLGERVARRRQDSRRTINPDTLIR 472 L ++ E+++ G R++ R +NP + + Sbjct: 424 ANPSPPEAKPEETPPTLTWPSLPPKVRGLVVVTETEVFG-----RQRQRRPALNPRAMAQ 478 Query: 473 --------NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVS 524 + +EL G VVHL+HG+ Y G+T L+ E + L + + L+VP+ Sbjct: 479 RAQIDQLLDFSELVEGDFVVHLQHGIAHYRGLTKLDTAQGVREVISLEFDDHVTLHVPLQ 538 Query: 525 SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 HLISRY G ++ L ++G W +AR A D+AAELL I A R A+ GFAF Sbjct: 539 ESHLISRYVGLSKTKPQLGRIGSGRWEKARLAAERATIDLAAELLRIQAAREAQPGFAFP 598 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 D + F SFPF T DQ +AI +DM + MDRL+CGDVGFGKTEVA+RAAF Sbjct: 599 PDTTWQKEFEASFPFTETRDQLRAIEETKTDMERTQPMDRLICGDVGFGKTEVAIRAAFK 658 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 AV +QVA+LVPTT+LAQQH + FR+R A +P+ IEM+SRFRS +Q +IL A G++ Sbjct: 659 AVQGGRQVAMLVPTTVLAQQHLNTFRERMAGYPIAIEMVSRFRSRADQKKILTATAAGQV 718 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 DILIGTH++LQ DVKF+DLGL+I+DEE RFGV+HKE K MR+ VD+L+++ATPIPRTL Sbjct: 719 DILIGTHRVLQHDVKFRDLGLVIIDEEQRFGVKHKEVFKQMRSTVDVLSMSATPIPRTLY 778 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 +A++G RDLS+I T P R ++T V+ YD +V +A+ E+ RGGQV+YL+N +E I Sbjct: 779 LALTGARDLSVIETAPTNRHPIQTVVKTYDEKLVIDAVRHELRRGGQVFYLHNRIETINL 838 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 A RL EL+P+ I +GHGQM +LE VM +F R+ +LVCTTIIE+G+DIP NTI+ Sbjct: 839 VAARLRELMPDVTIGVGHGQMEAADLEEVMTEFVAGRYQLLVCTTIIESGLDIPNCNTIL 898 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 IE AD FGL+QL+QLRGRVGR HQAYA+LL + A++RL A+ LGAGF Sbjct: 899 IEGADRFGLSQLYQLRGRVGRFKHQAYAYLLLHRHTRLLDVARQRLTAMRQHTQLGAGFR 958 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKA 988 +A DLE+RGAG LLG +QSG + +GF LY +LL +V LK Sbjct: 959 IAMRDLELRGAGNLLGAQQSGHIVGVGFELYCQLLRQSVARLKG 1002 Score = 531 bits (1369), Expect = e-149, Method: Compositional matrix adjust. Identities = 302/709 (42%), Positives = 418/709 (58%), Gaps = 72/709 (10%) Query: 438 VRNLALICESDLLGERVARRRQDSRRTINPDTLIR--------NLAELHIGQPVVHLEHG 489 VR L ++ E+++ G R++ R +NP + + + +EL G VVHL+HG Sbjct: 449 VRGLVVVTETEVFG-----RQRQRRPALNPRAMAQRAQIDQLLDFSELVEGDFVVHLQHG 503 Query: 490 VGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDA 549 + Y G+T L+ E + L + + L+VP+ HLISRY G ++ L ++G Sbjct: 504 IAHYRGLTKLDTAQGVREVISLEFDDHVTLHVPLQESHLISRYVGLSKTKPQLGRIGSGR 563 Query: 550 WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAI 609 W +AR A D+AAELL I A R A+ GFAF D + F SFPF T DQ +AI Sbjct: 564 WEKARLAAERATIDLAAELLRIQAAREAQPGFAFPPDTTWQKEFEASFPFTETRDQLRAI 623 Query: 610 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 669 +DM + MDRL+CGDVGFGKTEVA+RAAF AV +QVA+LVPTT+LAQQH + F Sbjct: 624 EETKTDMERTQPMDRLICGDVGFGKTEVAIRAAFKAVQGGRQVAMLVPTTVLAQQHLNTF 683 Query: 670 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 729 R+R A +P+ IEM+SRFRS +Q +IL A G++DILIGTH++LQ DVKF+DLGL+I+D Sbjct: 684 RERMAGYPIAIEMVSRFRSRADQKKILTATAAGQVDILIGTHRVLQHDVKFRDLGLVIID 743 Query: 730 EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF 789 EE RFGV+HKE K MR+ VD+L+++ATPIPRTL +A++G RDLS+I T P R ++T Sbjct: 744 EEQRFGVKHKEVFKQMRSTVDVLSMSATPIPRTLYLALTGARDLSVIETAPTNRHPIQTV 803 Query: 790 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERE 849 V+ YD +V +A+ E+ RGGQV+YL+N +E I A RL EL+P+ I +GHGQM + Sbjct: 804 VKTYDEKLVIDAVRHELRRGGQVFYLHNRIETINLVAARLRELMPDVTIGVGHGQMEAAD 863 Query: 850 LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 909 LE VM +F R+ +LVCTTIIE+G+DIP NTI+IE AD FGL+QL+QLRGRVGR HQ Sbjct: 864 LEEVMTEFVAGRYQLLVCTTIIESGLDIPNCNTILIEGADRFGLSQLYQLRGRVGRFKHQ 923 Query: 910 AYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL---------- 959 AYA+LL + A++RL A+ LGAGF +A DLE+RGAG LL Sbjct: 924 AYAYLLLHRHTRLLDVARQRLTAMRQHTQLGAGFRIAMRDLELRGAGNLLGAQQSGHIVG 983 Query: 960 ------------------GEEQSGSMET---IGFSLYMELLENAVDALKAGRE------- 991 GE+ + ++ + F + E A L AG+ Sbjct: 984 VGFELYCQLLRQSVARLKGEKTAAAIRASVKLDFVIVGEAEGRAGPPLPAGKAKDAPATA 1043 Query: 992 ---------PS------------LEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI 1030 PS L D Q ++ + LP +IP+ R+ FY+++ Sbjct: 1044 PAASGIAALPSSARGRHQDGYTALRDAEDAQVAELPKIQARLPAAYIPETRLRIDFYRKL 1103 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLE 1079 A A + +L+EI+ L DRFG + R LL ++R A++ I +E Sbjct: 1104 AMADSPAKLKEIEAALQDRFGKIGPDVRALLLTTQIRILAEQTNILSVE 1152 >UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GD25_9FIRM Length = 1185 Score = 577 bits (1487), Expect = e-163, Method: Compositional matrix adjust. Identities = 308/692 (44%), Positives = 437/692 (63%), Gaps = 29/692 (4%) Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 I + A+LH G V+H HG+G Y GM +E +T +Y+ + YA+ LY+ S + L+ Sbjct: 504 IASFAQLHEGDYVIHENHGLGIYRGMEKIEVDQVTKDYIKIEYADSGILYILASQMDLLQ 563 Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 +YAG L+ LG WSR + + V VA EL+++YA R +G+A+ D Sbjct: 564 KYAGADARRPRLNSLGSQEWSRTKSRVKRAVESVARELVELYAVRQEDKGYAYGPDTVWQ 623 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 + F ++FP+E T Q +AI AV DM P MDRL+CGDVGFGKTE+A+RAAF A K Sbjct: 624 REFEEAFPYEETEGQLEAIEAVKKDMESPKIMDRLICGDVGFGKTEIALRAAFKAAQEGK 683 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 QV LVPTT+LAQQHYD F R A +P+++ ++ RFR+ +Q Q ++E+A G++DI+IGT Sbjct: 684 QVVYLVPTTILAQQHYDTFVQRMAPYPIKVGLLCRFRNKTQQAQTVSELASGRVDIVIGT 743 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H+ L DV F+DLGLLI+DEE RFGVRHKE+IK M+ NVD+L+L+ATPIPRTL+M++ G+ Sbjct: 744 HRALSRDVVFRDLGLLIIDEEQRFGVRHKEKIKQMKKNVDVLSLSATPIPRTLHMSLVGI 803 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 RD+SI+ P R ++TFV E++ ++REA+LRE+ RGGQ+YY++N V I RL Sbjct: 804 RDMSILDEAPMERTPIQTFVFEHNDEMIREAVLREMARGGQIYYVFNRVAQIADMTARLQ 863 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 +L+PEA +A HG+M + LE +M DF ++LV TTIIE G+DI NTIII+ AD+ Sbjct: 864 KLLPEAHVAYAHGRMSQTRLENIMVDFIDGEIDLLVSTTIIEIGLDISNVNTIIIDDADN 923 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 GL+QL+QLRGRVGRS+ AYA+ + K + A+KRL AI DLG+GF +A DL Sbjct: 924 MGLSQLYQLRGRVGRSNRTAYAFFMYRRGKLLKEVAEKRLLAIKEFSDLGSGFKIAMRDL 983 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS 1010 EIRGAG +LGE QSG ME++G+ LY ++L AV +E E +T V+L M + Sbjct: 984 EIRGAGNVLGESQSGHMESVGYDLYCKMLGEAVR-----QEKGEEIYEPFETSVDLDMDA 1038 Query: 1011 LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPAR---TLLDIARLR 1067 LP+ ++ D R+ YKRIA ++E + + + ELIDRFG +PAR LL IA + Sbjct: 1039 YLPESYVADAGQRMEIYKRIADIRSEEDHDAMLEELIDRFG---EPARAVQNLLWIALFK 1095 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFA--EKNHVNPAWLIGLLQK---------QPQHYRLDGP 1116 +A + IR + +KG + + +NPA + L+ + PQ RL+ Sbjct: 1096 ARAHRAWIRDI--RQKGWQVSLTLFHQAPINPAVIPQLISRYSPYLHFTADPQEPRLE-- 1151 Query: 1117 TRLKFIQDLSERKTRI-EWVRQFMRELEENAI 1147 L F ++ K +I E +R F+ E E A+ Sbjct: 1152 --LDFGRNSRMEKRQIPEALRSFVEEFRELAV 1181 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 62/264 (23%), Positives = 126/264 (47%), Gaps = 22/264 (8%) Query: 43 VLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ 102 +++ D + A +L +E+ FT+ + A + L Y S + R+ + L + Sbjct: 57 LVVTRDEKRARQLAEELEFFTENVFYYPAK-DLLFYQSDIRSNVLTRQRMQAVEALRGKE 115 Query: 103 RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEY 162 V++ + LM ++ P S + + + +G + + R L +GY V +V GE+ Sbjct: 116 ETVIVTTWSALMNKLPPLSSYDKNIIEVAQGDDMPVEKWRLALIGSGYEPVARVEHPGEF 175 Query: 163 ATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEE---VEAINLLPAHEF-- 217 A RG ++D+FP+ P R++ + DE+D++R+FD DSQ +L + ++ I ++P+ E Sbjct: 176 AVRGGIIDVFPLTDANPIRIELWGDEVDTMRLFDPDSQLSLSDEDPLQTIRIVPSAEIVL 235 Query: 218 -PTD-KAAIELFRSQ-------WRDTFE------VKRDPEHIYQQVSKGTLPAGIEYWQP 262 P + + +E R+ +R++F+ +K + I + V G +E Sbjct: 236 SPEELRRGLEGIRADADRVCAGYRESFKTEEAARIKAAADQIIEDVEGGFGSQQVES-HL 294 Query: 263 LFFSEPLPPLFSYFPANTLLVNTG 286 +F++ L Y P + ++ G Sbjct: 295 TYFTDQTLSLIDYIPEDGVIFLDG 318 >UniRef50_D2R0K5 Transcription-repair coupling factor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R0K5_9PLAN Length = 1087 Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust. Identities = 304/693 (43%), Positives = 447/693 (64%), Gaps = 27/693 (3%) Query: 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNL 441 D V+ +E + L E+ A +A A+ R Y +IG GF L Sbjct: 348 DHEVMIITPTEAEVQRLREIFATTSLA---------ATGRLSY-VIGTLREGFRVPDEKL 397 Query: 442 ALICESDLL--GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTL 499 +I +L GE R+ + I+ + +L G VVHL HG+GR+AG+ L Sbjct: 398 IIITGGELFHRGELRRLPRRRLGKAID------SFLDLREGDLVVHLAHGIGRFAGIKLL 451 Query: 500 EAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAE 559 E G + E+L + + ++YVP + L+ +Y GG + L K+GG W + ++ A Sbjct: 452 ERGETSEEHLEIEFDGGTRIYVPAVRIDLVQKYVGGTKTRPSLAKIGGKTWLKQKKAAES 511 Query: 560 KVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQP 619 V D+A E+L++ A R+A+ G AF D E + F +SFPF+ T DQ +I ++ +DM + Sbjct: 512 AVADLAVEMLELQAMRSARPGIAFSADSEWQKEFDNSFPFQETVDQLTSIASIKADMQRA 571 Query: 620 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 MDRL+CGDVGFGKTEVAMRAAF AVDN QVAVLVPTT+LA+QHY +F +R A +P Sbjct: 572 RPMDRLLCGDVGFGKTEVAMRAAFKAVDNGYQVAVLVPTTILAEQHYRSFIERMAEFPCD 631 Query: 680 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK 739 I +SRF +++E+ + L + GK+DI++GTH+L DV F +LGL+I+DEE RFGV K Sbjct: 632 IAKLSRFCTSQEEREALKGIKSGKVDIVVGTHRLASQDVDFHNLGLVIIDEEQRFGVDVK 691 Query: 740 ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVR 799 ER+KA++A VD+LTL+ATPIPRTL+M++ G+RD+S + +PP R+ V+T V+ +++ ++R Sbjct: 692 ERLKALKATVDVLTLSATPIPRTLHMSLVGVRDISNLESPPEDRVPVETSVKRWNNDLIR 751 Query: 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 A+LRE+ RGGQ+Y+++N V +I+ A RL ++VPEA + IGHGQM E ELE+VM DF Sbjct: 752 TAVLRELNRGGQIYFVHNRVNDIEIIARRLNQIVPEASLRIGHGQMNETELEQVMVDFVA 811 Query: 860 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 +F++L+ TTI+E+G+DIP ANTI I A+ +GLA LHQLRGRVGR ++A+ +LL Sbjct: 812 GKFDLLLATTIVESGLDIPNANTIFINEAERYGLADLHQLRGRVGRYKNRAHCYLLIDSN 871 Query: 920 KAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELL 979 K++T +A +RL AI ++GAGF ++ DLEIRGAG LLG +QSG + +G+ LY +LL Sbjct: 872 KSITPNAARRLRAIEEFSEMGAGFQISMRDLEIRGAGNLLGTQQSGHIAAVGYELYCQLL 931 Query: 980 ENAVDALKAGREPSLEDLTSQQTEVELRMP--SLLPDDFIPDVNTRLSFYKRIASAKTEN 1037 ENAV +L+ R+P QQ V+L +P + LP D++ D+ ++ Y+R++ + Sbjct: 932 ENAVRSLQ--RQPP-----KQQLAVDLNLPGEAFLPSDYVDDMRLKIDLYRRLSRVGSPT 984 Query: 1038 ELEEIKVELIDRFGLLPDPARTLLDIARLRQQA 1070 EL + + EL+DRFG P P LL + L+ A Sbjct: 985 ELADFRSELVDRFGEPPPPVEHLLMLTGLKIDA 1017 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 14/186 (7%) Query: 41 PVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQL-- 98 PV+ + P + A L +I+ F Q ++ L +E+ D RL TL +L Sbjct: 65 PVIAVLPTQREADDLAIDIALFRSQGILPLPSFESAIVAELG-RDDAFGPRLRTLKELLV 123 Query: 99 --------PTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGY 150 T+Q+ +++ +++L+Q + L + ++K + L D L GY Sbjct: 124 ARENPRAAATLQQ-LVVTSIHSLLQPMPQREVLAASSRRVRKQESLEIDPFLRWLVEHGY 182 Query: 151 RHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAIN 210 V GE+ RG ++DLF + P R++ FDDE++S+R FDV +QR+L ++ + Sbjct: 183 EATTSVQLPGEFCHRGGIIDLFAHDWQRPARIELFDDEVESIRQFDVATQRSLGALDWVE 242 Query: 211 L--LPA 214 + +PA Sbjct: 243 ITAIPA 248 >UniRef50_C8PBN6 Transcription-repair-coupling factor n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PBN6_9LACO Length = 1110 Score = 575 bits (1482), Expect = e-162, Method: Compositional matrix adjust. Identities = 289/660 (43%), Positives = 437/660 (66%), Gaps = 10/660 (1%) Query: 423 RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQP 482 R +++ GFV +L + E DL + ++ +++ IR+ EL+ G Sbjct: 386 RQIIVDNFNQGFVLPRISLVYLTEHDLFNRQPHIHKK--IKSLENAQQIRSYQELNPGDY 443 Query: 483 VVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPL 542 VVH+ HG+G + G+ TLE+ G G+Y+ +TY N +L+VP L ++ +Y + + Sbjct: 444 VVHINHGIGIFEGIKTLESNGQKGDYITITYRNHDQLFVPADQLGVVQKYVASDGKIPKI 503 Query: 543 HKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETT 602 +KLGG+ W++ + + EK+ D+A ELL IYA RA ++GFAF D E + F +FP+ T Sbjct: 504 NKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRATEKGFAFLPDDELQRDFEAAFPYLET 563 Query: 603 PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLA 662 PDQ +AI + DM + MDRL+ GDVGFGKTEVA+RAAF A+D+ KQVA LVPTT+LA Sbjct: 564 PDQIKAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILA 623 Query: 663 QQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 722 +QHY +RF ++PV + M+ RF++ KE +I ++ GKIDI++GTH++L D+KFK+ Sbjct: 624 EQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKN 683 Query: 723 LGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR 782 LGLLI+DEE RFGV+HKE++K ++ N+D+LTLTATPIPRTL+M+M G+RDLS++ TPPA Sbjct: 684 LGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVMETPPAN 743 Query: 783 RLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 842 R ++T+V E +VREA LRE+ R GQ+++L+N +++I + L++L+PEARI H Sbjct: 744 RYPIQTYVTEETPNIVREACLRELARNGQIFFLHNKIQDIDQKVAYLSQLIPEARIEYIH 803 Query: 843 GQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGR 902 G+M ER+LE +M F ++F++LV TTIIETG+D+P NT+++E AD +GL+QL+QLRGR Sbjct: 804 GRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQLYQLRGR 863 Query: 903 VGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEE 962 +GRS AYA+ L K +T ++KRL AI LG+GF +A DL IRGAG +LG++ Sbjct: 864 IGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGAGNILGKQ 923 Query: 963 QSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNT 1022 Q G ++++G+ LY ++L+ + K R + T+ EV + + + +P ++I Sbjct: 924 QHGFIDSVGYDLYAQMLDQTI---KQKRGDKVCHKTN--AEVRINLEAYIPTEYISSQKQ 978 Query: 1023 RLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR---QQAQKLGIRKLE 1079 ++ FYK+I A +++I ELIDRFG P LL+IA ++ AQ L I ++ Sbjct: 979 KIEFYKKIKHANDVKAIDDIADELIDRFGTYPKSVENLLNIATIKVLADTAQILSITNID 1038 Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 4/210 (1%) Query: 11 VKAGEQRLLGELTG---AACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ-FTDQM 66 +KA Q LTG A ++ E+ R P++++A D A +++ + + F + M Sbjct: 17 IKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSSLVELFEENM 76 Query: 67 VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGH 126 V L + D +S RL + L T Q+G++I L + + Sbjct: 77 VHFFPVEPLLETQAAVSSLDELSQRLDAMSFLLTKQKGIVISTPQALQYPLPAAIKFKAN 136 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 +L +K Q + + L GY+ D V GE+A RG +LD++P+ PYR++FFD Sbjct: 137 SLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFALRGDILDIYPINIAYPYRIEFFD 196 Query: 187 DEIDSLRVFDVDSQRTLEEVEAINLLPAHE 216 DEID++R F+ SQRT + + + + PA + Sbjct: 197 DEIDNIRTFNSVSQRTKDSLTEVVIEPADD 226 >UniRef50_C5VMF4 Transcription-repair coupling factor n=2 Tax=Prevotella RepID=C5VMF4_9BACT Length = 1178 Score = 575 bits (1481), Expect = e-162, Method: Compositional matrix adjust. Identities = 348/1014 (34%), Positives = 550/1014 (54%), Gaps = 86/1014 (8%) Query: 106 LIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATR 165 ++ + L + V L L + Q + + L S G+ D V E G++A R Sbjct: 135 IVTEPSALSELVVSKKQLDERRLTLTVDQHIDIVEVEKTLRSFGFTETDYVYEPGQFAVR 194 Query: 166 GALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPA-HEFPTDKAAI 224 G+++D++ +ELP+R+DFF D+I+++R F+V++Q + E++ + ++P +K Sbjct: 195 GSIIDVYSFSNELPFRIDFFGDDIETIRNFEVETQLSTEKLTRVEIVPELTTMSEEKVPF 254 Query: 225 ELFRSQ-----WRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN 279 F + ++D V+ ++IYQ+ F ++ L Sbjct: 255 LQFLPEDAVLAFKDFLYVRDAIDNIYQEG---------------FTNQAL---------- 289 Query: 280 TLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL 339 T LE E Q + F G L P S W+ ++ ++ R++ Sbjct: 290 -----TEKLEGKTELEQRELEVAFRKEG------QLVPASRWM------NDALDFRRIEF 332 Query: 340 KTEHLPTKAAN------ANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEG 393 + + A A + F P LR +L +F+ +SE Sbjct: 333 GINYSSSDLAKKKDGSRATINFSTSPQPLFHKNFDLLSKTLRDYLIKGYKLYIFA-DSEK 391 Query: 394 RREALGEL---LARIKIAP-QRIMRLDEASDRGRYLMIGAA---------EHGFVDTVRN 440 + L ++ L+ ++P + + E S G+ +GA GFVD+ Sbjct: 392 QTVRLRDIFDSLSDTNVSPDSENLSVAELSGEGQDATVGALPFTPVNRTLHEGFVDSTLK 451 Query: 441 LALICESDLLGERVARR--RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTT 498 + + + +R + + D R ++ L E+ G +VH++ G+G++AG+ Sbjct: 452 VCFFTDHQIF-DRFHKYNLKSDKARQGKMALTMKELQEMEPGDFLVHVDFGIGKFAGLVR 510 Query: 499 LEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP-LHKLGGDAWSRARQKA 557 + AG E + L Y ++ + V + SL+ IS+Y G P L LG AW R ++KA Sbjct: 511 VPAGDSYQEMIRLVYQHNDIVDVSIHSLYKISKYRRGDSGEPPRLSVLGSGAWDRLKEKA 570 Query: 558 AEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMC 617 ++++D+A +L+ +YA+R ++GFAF D SF +E TPDQ +A + DM Sbjct: 571 KKRIKDIARDLIKLYAKRRREKGFAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDME 630 Query: 618 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 MDRLVCGDVGFGKTEVA+RAAF A ++KQVAVLVPTT+LA QHY F+ R + P Sbjct: 631 SARPMDRLVCGDVGFGKTEVAIRAAFKAAVDNKQVAVLVPTTVLAFQHYQTFKKRLKDMP 690 Query: 678 VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVR 737 VR++ +SR RSAK+ Q+L ++AEGKIDIL+GTHKL+ VK+ DLGLLI+DEE +FGV Sbjct: 691 VRVDYLSRARSAKQTKQVLEDLAEGKIDILVGTHKLIGKSVKWHDLGLLIIDEEQKFGVS 750 Query: 738 HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV 797 KE+++ ++ NVD LT++ATPIPRTL ++ G RD+SI+ TPP R ++T + + V Sbjct: 751 TKEKLRQLKTNVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTEIASFSHEV 810 Query: 798 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 857 + +AI E+ R GQVY++ + + N+ + A + + VP RIAIGHGQM+ ELE ++ F Sbjct: 811 IADAINFEMSRNGQVYFVNDRISNLPEIANLIKKYVPNCRIAIGHGQMKPEELEEIVMGF 870 Query: 858 HHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP 917 + ++VL+ TTI+E GIDI ANTIII A FGL+ LHQ+RGRVGRS+ +A+ +LL P Sbjct: 871 MNYDYDVLLSTTIVENGIDISNANTIIINDAHRFGLSDLHQMRGRVGRSNKKAFCYLLAP 930 Query: 918 HPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYME 977 A+ +A++RLEA+ + DLG+GF LA DL+IRGAG LLG EQSG ME +G+ Y + Sbjct: 931 PLAALNPEARRRLEALETFSDLGSGFNLAMQDLDIRGAGNLLGSEQSGFMEDLGYETYQK 990 Query: 978 LLENAVDALK-------------AGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRL 1024 +L AV LK G++ + +D VE + PD+++P + R+ Sbjct: 991 ILNQAVMELKNDEFQDLYEEEMDEGKQITGDDFID-DCAVESDLEMYFPDNYVPGSSERM 1049 Query: 1025 SFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 Y+ + + + + +L+ + L DRFG +P L+ + LR+ ++LG K+ Sbjct: 1050 LLYRELDNIEKDEDLDAYRKRLQDRFGPVPRQGEELMQVVALRRVGKRLGCEKI 1103 >UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Corynebacterineae RepID=MFD_MYCBO Length = 1234 Score = 575 bits (1481), Expect = e-162, Method: Compositional matrix adjust. Identities = 315/671 (46%), Positives = 426/671 (63%), Gaps = 29/671 (4%) Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVA----RRRQDSRRTINPDTLIRNLAELHIG 480 ++ G G + NL +I E+DL G RV+ +R RR I + LA L G Sbjct: 468 VLQGPLRDGVIIPGANLVVITETDLTGSRVSAAEGKRLAAKRRNI-----VDPLA-LTAG 521 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA---------NDAKLYVPVSSLHLISR 531 VVH +HG+GR+ M GG EYL+L YA N KLYVP+ SL +SR Sbjct: 522 DLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLDQLSR 581 Query: 532 YAGGAEENAP-LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 Y GG AP L +LGG W+ + KA VR++A EL+ +YA+R A G AF D Sbjct: 582 YVGG---QAPALSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDTPWQ 638 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 D+F F T DQ AI V +DM +P+ MDR++CGDVG+GKTE+A+RAAF AV + K Sbjct: 639 AELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGK 698 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 QVAVLVPTTLLA QH F +R + +PV I+ +SRF A E ++ +A+G +DI+IGT Sbjct: 699 QVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGT 758 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H+LLQ+ V++KDLGL++VDEE RFGV HKE IK++R +VD+LT++ATPIPRTL M+++G+ Sbjct: 759 HRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSLAGI 818 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 R++S I TPP R V T+V +D + A+ RE+LR GQ +Y++N V +I AA R+ Sbjct: 819 REMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAARVR 878 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 ELVPEAR+ + HGQM E LE + F ++ ++LVCTTI+ETG+DI ANT+I+ERAD Sbjct: 879 ELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVERADT 938 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 FGL+QLHQLRGRVGRS + YA+ L P +T A RL IA +LGAG A+A DL Sbjct: 939 FGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVALKDL 998 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMEL----LENAVDALKAGREPSLEDLTSQQTEVEL 1006 EIRGAG +LG EQSG + +GF LY+ L LE DA +A + + +V + Sbjct: 999 EIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKDVRI 1058 Query: 1007 RMP--SLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA 1064 +P + LP D+I RL Y+R+A+A ++ E+ + EL DR+G LP+PAR L +A Sbjct: 1059 DLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLAAVA 1118 Query: 1065 RLRQQAQKLGI 1075 RLR + GI Sbjct: 1119 RLRLLCRGSGI 1129 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 97/200 (48%), Gaps = 12/200 (6%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSF 81 L A A L+ A GP++++ + A L E+ V L WETLP++ Sbjct: 42 LIAPASARLLVASALARQGPLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERL 101 Query: 82 SPHQDIISSRLSTLYQL---------PTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKK 132 SP D + +RL L +L P + GV++ V +L+Q + P + L + Sbjct: 102 SPGVDTVGTRLMALRRLAHPDDAQLGPPL--GVVVTSVRSLLQPMTPQLGMM-EPLTLTV 158 Query: 133 GQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 G D + +L Y VD V GE+A RG +LD+F +E P R++F+ DEI + Sbjct: 159 GDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEM 218 Query: 193 RVFDVDSQRTLEEVEAINLL 212 R+F V QR++ E++ L+ Sbjct: 219 RMFSVADQRSIPEIDIHTLV 238 >UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Brachyspira RepID=C0R051_BRAHW Length = 1247 Score = 574 bits (1479), Expect = e-162, Method: Compositional matrix adjust. Identities = 297/757 (39%), Positives = 464/757 (61%), Gaps = 15/757 (1%) Query: 390 ESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDL 449 E++ E E++ + I + ++ Y++ + GF+ I + ++ Sbjct: 435 ENDDNNEDNKEIILEDTNKKEEIKKDYSKNENNFYIITAQSSSGFIKDDIKTIFIADWEV 494 Query: 450 LGERVARRRQDSRRT--INPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGE 507 G R+R+ R+ +N + LI +L++G VH+ +G+G+Y G+T + G + Sbjct: 495 FG----RKRKKVRKIPKVNKN-LIETFVDLNVGDYAVHVNYGIGKYLGLTRKMSNGKEKD 549 Query: 508 YLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAE 567 Y+ L YA KLY+PV ++ + +Y G E L +LGG AW + + KA E A E Sbjct: 550 YITLEYAKGDKLYIPVEQMNFVQKYISGHGEAPKLTQLGGSAWDKIKSKAREDALATARE 609 Query: 568 LLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 L+ +YA R+ G + D + F SF +E T DQ +AIN + DM MDRLVC Sbjct: 610 LIKLYAIRSNIRGNVYGPDTQWQDDFEASFRYEETVDQLRAINDIKEDMESGKMMDRLVC 669 Query: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 GDVGFGKTEVA RA F A+ KQ A+L PTT+L+QQHY+N + RF ++P++IE+++RF Sbjct: 670 GDVGFGKTEVAFRAVFKAIMAGKQCAILCPTTILSQQHYNNAKKRFEDFPIKIEVLNRFV 729 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 ++K+ + + EG D+++GTH LL D++FK+LGL+++DEE RFGV+HKE +K +R Sbjct: 730 TSKQAKRNKELLKEGSCDLIVGTHMLLSKDIEFKNLGLIVIDEEQRFGVKHKEALKKLRL 789 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL 807 D+LTL+ATPIPRTLNMA++G+RD+SII TPP R+ VKTFV E+ V AI RE+ Sbjct: 790 ETDVLTLSATPIPRTLNMALTGIRDISIIETPPLNRIPVKTFVTEFSEDAVVNAIERELK 849 Query: 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 R GQV+YLYN ++ I+ A + +L P+ARI + HG+M +LE++M DF + ++++LV Sbjct: 850 REGQVFYLYNRIDTIESFALMIKKLCPKARICVAHGRMTGHQLEKIMGDFINHKYDILVS 909 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 TTIIE GIDIP ANTI+I+ A+ GL++L+QLRGRVGRS +AYA++ P A+T A Sbjct: 910 TTIIENGIDIPNANTILIDNANKLGLSELYQLRGRVGRSDREAYAYMFYPSDLALTEVAY 969 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK 987 KRLEAI+ DLGAGF +A DLEIRGAG +LG+EQSG + +G+ LY ++LE A + K Sbjct: 970 KRLEAISEHTDLGAGFKIAMRDLEIRGAGNILGKEQSGMIYQVGYELYTQMLEEAANEYK 1029 Query: 988 AGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELI 1047 ++++T T ++L+ +PD +I D ++S YK I ++ + ++E K +I Sbjct: 1030 G----EIKEVTF-DTVIDLKHNLFIPDSYIADSKEKISAYKLIMRSQRDEDIEYSKEFMI 1084 Query: 1048 DRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQ 1107 D++G LP + DIA+++ +++ I + ++ + + ++ LI L+ + Sbjct: 1085 DKYGKLPKELEDIFDIAKVKIILKRMRILSVIEGHYNIYLKLDKLSKIDTDKLINLINTK 1144 Query: 1108 PQ--HYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 ++ D +L I + E++ IEW + +R + Sbjct: 1145 NSGVYFDKDNLNQL-IIPVIHEKENDIEWKLEKIRNV 1180 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 109/205 (53%), Gaps = 8/205 (3%) Query: 72 DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 D++T+P+ SP DI R++ LY+L ++ ++I VN + +++ L + + Sbjct: 83 DYDTVPFTKMSPVSDIAQDRINILYKLINKEKCIIITTVNAVTRKLPNRDDLKKLPIHLN 142 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 G +L D LR L GY +V E G + RG+++D+F + P R++ FDDEI+S Sbjct: 143 VGDKLDLDNLRLTLYDLGYVIEREVAEKGTASVRGSIVDVFSVEYNNPIRIELFDDEIES 202 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKG 251 +R+F+++ R+ + VE I + P E +A+ S++ + E++ + + + K Sbjct: 203 IRLFNIEDGRSFKSVENIIIYPVRETIYSDSAV----SEFINNNEIE---DELKDNIIKR 255 Query: 252 TLPAGIEYWQPLFFSEPLPPLFSYF 276 AG E P+F+ + L +F YF Sbjct: 256 KYFAGSENLLPIFYKD-LETIFDYF 279 >UniRef50_D1R5W0 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5W0_9CHLA Length = 1103 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 293/648 (45%), Positives = 417/648 (64%), Gaps = 9/648 (1%) Query: 450 LGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGM-TTLEAGGITGEY 508 + R RRQ R T + T + L G VVHL HG+GR+ G+ L G+ E+ Sbjct: 429 VSHRYKLRRQKLRSTYH--TPPSDSYHLVPGDMVVHLNHGIGRFLGLEKKLNHNGVLSEF 486 Query: 509 LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAEL 568 ++ YA + KLYVP++ HL+++Y G +E+ +H LG W + +++ E + A +L Sbjct: 487 FLIEYAENGKLYVPLNQAHLVTKYIGSSEDLPSMHTLGSARWKKTKERTQEAIVGYAKDL 546 Query: 569 LDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCG 628 L +YA R+ K G + D Q F + FP+E T DQ AI ++ DM +MDRL+CG Sbjct: 547 LQLYAHRSLKAGLIYPSDSIDMQDFEEDFPYEETEDQLNAIASIKEDMQSTKSMDRLICG 606 Query: 629 DVGFGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 DVG+GKTEVAMRAAF AV D HKQVA+LVPTT+LA QHY+NF +R +N+PVRI ++SRFR Sbjct: 607 DVGYGKTEVAMRAAFKAVMDGHKQVALLVPTTVLAMQHYENFIERMSNFPVRIGVLSRFR 666 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 + KE + L +VA+G IDILIGTH+L+ DV F DLGL+I+DEEHRFGV+ KE +K ++ Sbjct: 667 TPKEIRETLEQVAKGSIDILIGTHRLISKDVVFHDLGLIIIDEEHRFGVKAKEHLKKIKM 726 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL 807 VD +TL+ATPIPRTL M++ G RD+S+I TPP RL + T + E +V + A+LRE+ Sbjct: 727 GVDCITLSATPIPRTLYMSLVGARDMSVINTPPQDRLPITTIISEPGDLVFKNALLRELS 786 Query: 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 R GQ Y ++N VE I A ++ EL+P+AR+ +GHGQM E++ V + F ++LV Sbjct: 787 RDGQAYVIHNRVETIFGVASKIKELLPQARVVVGHGQMSADEIDSVFHAFKSGAADILVA 846 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 TTIIE+GIDIP ANTI+I RAD FGLA L+QLRGRVGR + +AYA+ L P+ K++ A+ Sbjct: 847 TTIIESGIDIPNANTILINRADQFGLADLYQLRGRVGRWNRRAYAYFLVPNLKSLPQLAR 906 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK 987 KRL A+A G G LA HDLEIRGAG +LG EQSG + IGF Y +LL + L+ Sbjct: 907 KRLHALAEACGYGGGMKLAMHDLEIRGAGNILGTEQSGHVSAIGFHFYCKLLRRTIQTLQ 966 Query: 988 AGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELI 1047 + +T++E + LP+D++ +V+ R+ Y+R+ A +++E I+ EL Sbjct: 967 GELSAGM-----VETKLEFHYDACLPEDYVNEVSLRMEIYQRLGEAIALSDVELIEQELK 1021 Query: 1048 DRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHV 1095 DRFG L + L+ + R+R A + G L+ ++ IE+ + + Sbjct: 1022 DRFGPLVIQVQWLMALTRIRVFASQRGYTTLKFDKLAISIEWKKGKQI 1069 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 69/207 (33%), Positives = 112/207 (54%), Gaps = 3/207 (1%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLI-APDMQNALRLHDEISQFTDQMVMNL 70 K G+ L+ EL A A L+A +A + G VLI Q RL+ + F+ ++ Sbjct: 19 KQGDPVLIEELWNAPKA-LIASLALQVTGKHVLILTGGSQEESRLYHDFPFFSSAPLLEF 77 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQLP-TMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 WETLP ++ +P D + +R L Q+ T Q ++I + +Q + P L Sbjct: 78 PAWETLPSENIAPSPDTVGARYKALRQVSATFQPHIIISGLQACLQSLIPPQNFDSLYLA 137 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 +KKG+ D L +L+ GYR + GE+A RG ++D+FP+ S P+R++F+ D+I Sbjct: 138 LKKGETFPFDTLIQRLNEMGYRRSAVAADKGEFAIRGGIIDIFPVASPDPFRIEFWGDDI 197 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHE 216 +S+R+FD QR+++ VE I + PA E Sbjct: 198 ESIRIFDPIGQRSIKTVEHIEITPAQE 224 >UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B5CPD5_9FIRM Length = 1117 Score = 572 bits (1474), Expect = e-161, Method: Compositional matrix adjust. Identities = 313/684 (45%), Positives = 446/684 (65%), Gaps = 13/684 (1%) Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 ++ G G+ + +I ESD+ G+R + RR + I+ AEL G VV Sbjct: 396 VVYGCVAEGYEYPMLKFMVISESDIFGKRKKK----RRRKVYEGQKIQEFAELKPGDYVV 451 Query: 485 HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544 H HG+G Y G+ +E +T +Y+ ++YA+ LY+ + + LI +YAG + L+K Sbjct: 452 HENHGLGVYQGIEKVEVDKVTRDYMKISYADGGILYILATQMDLIQKYAGADAKPPKLNK 511 Query: 545 LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604 LG W++ + + + V+ +A +L+++YA R EGF + D + F + FPFE T D Sbjct: 512 LGTPQWNKTKSQVKKAVQVIAQDLVELYAVRQQTEGFVYSPDTVWQKEFEEMFPFEETED 571 Query: 605 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 664 Q +AI DM MDRL+CGDVG+GKTEVA+RAAF AV + KQV LVPTT+LAQQ Sbjct: 572 QLRAIEDTKKDMESTKVMDRLICGDVGYGKTEVAIRAAFKAVQDGKQVVYLVPTTILAQQ 631 Query: 665 HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 724 HY+ F R ++PVRI+++ RFR+ +Q + + ++ +G +DI+IGTH++L DV +KDLG Sbjct: 632 HYNTFIQRLKDFPVRIDLLCRFRTPAQQKKTIEDLKKGLVDIVIGTHRVLSKDVTYKDLG 691 Query: 725 LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784 LLI+DEE RFGV HKE+IK MR N+D+LTLTATPIPRTL+M++ G+RD+S++ P R+ Sbjct: 692 LLIIDEEQRFGVTHKEKIKKMRENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPMDRM 751 Query: 785 AVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 844 ++T+V E++ ++REAI RE+ RGGQVYY+YN VE+I A R+ +LVP A ++ HGQ Sbjct: 752 PIQTYVMEFNDEMIREAIERELSRGGQVYYVYNRVEDIADVAGRVQKLVPGASVSFAHGQ 811 Query: 845 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 M ERELE +M DF + +VLV TTIIETG+DI ANT+II+ AD FGL+QL+QLRGRVG Sbjct: 812 MSERELEDIMYDFINGEIDVLVSTTIIETGLDIANANTMIIQDADRFGLSQLYQLRGRVG 871 Query: 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 964 RS AYA+LL K + A+KRL AI DLG+G +A DLEIRGAG LLGE QS Sbjct: 872 RSSRMAYAFLLYRRDKLLKEVAEKRLAAIREFTDLGSGIKIAMRDLEIRGAGNLLGEAQS 931 Query: 965 GSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRL 1024 G M +G+ LY ++L AV LK +E ED + T ++L + + +P+ +I + +L Sbjct: 932 GHMAAVGYDLYCKMLNEAVKELKGEKE---EDQFT--TTMDLNIDAFIPESYIKNEYQKL 986 Query: 1025 SFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKG 1084 YKRIA+ TE E++++ ELIDRFG +P + LL IA L+ A + +E +KG Sbjct: 987 DIYKRIAAITTEEEMDDMTEELIDRFGDIPKKVQQLLHIAALKSLAHAAYVTAVE--QKG 1044 Query: 1085 GVIEFA--EKNHVNPAWLIGLLQK 1106 +F EK ++P + GLLQ+ Sbjct: 1045 SDFKFTLYEKAKLDPQKIPGLLQR 1068 Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 56/87 (64%) Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 ++ G + L+ +L GY Q+ G++A RG +LD++P+ E+P R++ + DEI Sbjct: 142 IEAGAVIDFQKLQEELVHLGYERESQIEGPGQFAVRGGILDVYPLTEEIPVRIELWGDEI 201 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHE 216 DS+R FDV+SQR++E +E + + PA E Sbjct: 202 DSIRSFDVESQRSVENMEKVVIYPATE 228 >UniRef50_Q6MB04 Probable transcription-repair coupling factor mfd n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MB04_PARUW Length = 1101 Score = 572 bits (1473), Expect = e-161, Method: Compositional matrix adjust. Identities = 289/628 (46%), Positives = 412/628 (65%), Gaps = 9/628 (1%) Query: 450 LGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTT-LEAGGITGEY 508 L R RRQ R T + T +L G+ +VHL +G+GRY G+ GI E+ Sbjct: 432 LTHRYKIRRQKLRSTYH--TSPAETYDLTPGEVIVHLNNGIGRYLGIEKRANHLGILSEF 489 Query: 509 LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAEL 568 + YA+ AKLYVP + HLI++Y G E LH +G W + ++ + A++L Sbjct: 490 FTIEYADQAKLYVPFNQAHLITKYLGSNEVIPKLHTIGSSKWKKTKEHTERAILGYASDL 549 Query: 569 LDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCG 628 L YA+R KEGFA+ D Q F FPF T DQ AI+++ DM AMDRL+CG Sbjct: 550 LKSYAEREIKEGFAYPIDSADLQSFEGEFPFSETEDQLAAISSIKQDMMSKKAMDRLICG 609 Query: 629 DVGFGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 DVG+GKTEVAMRAAF AV D KQVAVLVPTT+LA QH+DNF DR AN+P+ I ++SRFR Sbjct: 610 DVGYGKTEVAMRAAFKAVTDGAKQVAVLVPTTVLAMQHFDNFLDRMANFPINIGILSRFR 669 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 + K+ + L +A G IDI+IGTH+++ DVKFKDLGL+I+DEE RFGV+ KE +K ++ Sbjct: 670 TQKQIQETLEGIANGFIDIVIGTHRIIGEDVKFKDLGLVIIDEEQRFGVKAKEHLKKIKI 729 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL 807 VD LTL+ATPIPRTL M++ G RD+S+I TPP RL KT + E +++ A+LRE+ Sbjct: 730 GVDCLTLSATPIPRTLYMSLIGARDMSVINTPPQDRLPTKTIITEPSDQIIQNALLRELS 789 Query: 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 R GQ + ++N VE+I + R+ L+P+AR+ + HGQM E++ + F + ++LV Sbjct: 790 RDGQAFVIHNRVESIYSVSNRIKSLLPQARVLVAHGQMHADEIDATFHAFKSGQADILVA 849 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 TTI+E G+DIP ANTI+I+RADHFGLA L+QLRGRVGR + +AYA+ L P+ + M + Sbjct: 850 TTIVENGVDIPNANTILIDRADHFGLAALYQLRGRVGRWNRRAYAYFLVPNLRVMPELTR 909 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK 987 KRL+A++ G+G +A DLEIRGAG++LG EQSG + +IGF LY ++L+ + L+ Sbjct: 910 KRLQALSEASGYGSGMKVAMRDLEIRGAGDILGLEQSGHVSSIGFHLYCKMLKRTIQTLQ 969 Query: 988 AGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELI 1047 G+ PS+ +T++EL + + LP+D++ +V+ R+ Y+R+ A + E++ I E+ Sbjct: 970 -GKLPSI----VTETKIELAIDARLPEDYVNEVSLRMEVYQRLGEAFSLEEVDSIWSEIR 1024 Query: 1048 DRFGLLPDPARTLLDIARLRQQAQKLGI 1075 DRFG P+PA+ L + R+R A + G Sbjct: 1025 DRFGPPPEPAQWLYHLTRIRVHASRFGF 1052 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 61/202 (30%), Positives = 108/202 (53%), Gaps = 3/202 (1%) Query: 18 LLGELTGAACATLVAEIAERHAGPVVLI-APDMQNALRLHDEISQFTDQMVMNLADWETL 76 L+ EL A A L+A +A++ G VLI Q RL ++S FT+ ++ WETL Sbjct: 29 LIEELWNAPKA-LIAALAQQVTGKHVLILTGSSQEEARLFHDLSFFTNCPTVDFPSWETL 87 Query: 77 PYDSFSPHQDIISSRLSTLYQL-PTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 P ++ P DI+ R L ++ + + +++ + +Q++ S L +K + Sbjct: 88 PSENVPPSPDIVGERYQLLKKINSSSEPHIILTSLQACLQKLIAPSAFQKLYLTLKANES 147 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 D L +L+ GY+ + GE+A RG ++D+FP+ S PYRL+F+ D+++S+R++ Sbjct: 148 FFFDDLIQKLNLMGYQRKFIASDKGEFAVRGGIIDVFPVSSPDPYRLEFWGDDLESIRIY 207 Query: 196 DVDSQRTLEEVEAINLLPAHEF 217 D Q ++ VE I++ P E Sbjct: 208 DPIGQISVRAVEQIDIAPGLEL 229 >UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Veillonella RepID=D1BNT3_VEIPT Length = 1098 Score = 570 bits (1468), Expect = e-160, Method: Compositional matrix adjust. Identities = 296/654 (45%), Positives = 434/654 (66%), Gaps = 7/654 (1%) Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 ++ G GF +L ++ E ++ G++ + R ++ I +L G VV Sbjct: 377 ILNGLLTDGFELPNSHLVVVVEGNIYGQQKRKLRNKPKKGQE----INYFTDLTPGDYVV 432 Query: 485 HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544 H HG+G+Y G+ T+E GI +Y+ + YA KL++P ++L + +Y G + +HK Sbjct: 433 HSMHGIGKYIGLKTIETEGIHRDYIEIAYAGTDKLFLPANNLDQLQKYIGNEGDVPRIHK 492 Query: 545 LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604 +GG W++ KA + + D+A +L++IYAQR EGFAF D+ Q F D+FP+E T D Sbjct: 493 MGGRDWAKVVTKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPWQQEFEDAFPYEETED 552 Query: 605 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 664 Q QA + M +P+ MDRL+ GDVGFGKTEVAMRA F AV + KQVAVLVPTT+LAQQ Sbjct: 553 QLQATAEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLVPTTVLAQQ 612 Query: 665 HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 724 H+ F +RFA + V++++++RFR+ E+ QIL V +G IDILIGTH LL V FKDLG Sbjct: 613 HFQTFLNRFAPFGVKVDVLNRFRTTSEKKQILKGVEDGSIDILIGTHSLLNKKVVFKDLG 672 Query: 725 LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784 +L+VDEE RFGV KE+ K +N+D+LTL+ATPIPRTL+M++ G+R++S+I TPP RL Sbjct: 673 MLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGVREMSVINTPPEERL 732 Query: 785 AVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 844 V+T+V EYD ++ +AI RE+ RGGQVY++YN V +I E L +P R A+ HGQ Sbjct: 733 PVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELLESALPGLRYAVAHGQ 792 Query: 845 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 M R++E +M DF+ ++VL+ T+IIETG+DIP ANTIII AD GL+QL+Q+RGRVG Sbjct: 793 MTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQLYQMRGRVG 852 Query: 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 964 RS +AYA+ + K ++ A+KRL+AI +LGAGF LA DLEIRGAG LLG +Q Sbjct: 853 RSRRRAYAYFMYRPDKILSEAAEKRLKAIEEFTELGAGFKLAMRDLEIRGAGNLLGSQQH 912 Query: 965 GSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRL 1024 G++ ++GF +Y+ +LE +A+ + +E S ++L + + + D +I D ++ Sbjct: 913 GNIASVGFGMYVSMLE---EAIAKAQNKEVERDVSIDPAIDLEVDAFIDDAYIKDSARKI 969 Query: 1025 SFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 S Y+R+ K++ +L+++ ELIDRFG DP LL IA++++QA+ LGI+ + Sbjct: 970 SVYQRLLHIKSKEQLDDMTDELIDRFGTPTDPVDRLLRIAQIKEQARLLGIKSV 1023 Score = 93.2 bits (230), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 109/204 (53%), Gaps = 3/204 (1%) Query: 12 KAGEQRLLGELTGAACATLVAE-IAERHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMN 69 + G+ + G L+G+ + L+++ + PVV++ D + +++ F + V++ Sbjct: 24 RKGKSVIYG-LSGSQKSFLLSQSFSAGLTKPVVIVVHDKDHKEMWERDLAFFMPNAPVLS 82 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 + + + + + ++ +++ L L + V+I + Q V +L G +L Sbjct: 83 FPTTDHVDFTTVARSLEVQGAQMRALALLAWQEPAVVIANAEEVTQYVVSPHYLKGQSLH 142 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 + RD QL + GY VDQV + G +A RG +LD++P+ S+ P R++FF DEI Sbjct: 143 FALNDAIERDVALEQLVTIGYERVDQVEQRGHFAVRGDILDIYPVNSDHPIRIEFFGDEI 202 Query: 190 DSLRVFDVDSQRTLEEVEAINLLP 213 D+LR F V++QR++E++E+ + P Sbjct: 203 DTLRFFSVENQRSIEQIESYTVTP 226 >UniRef50_Q2S6G5 Transcription-repair coupling factor n=2 Tax=Rhodothermaceae RepID=Q2S6G5_SALRD Length = 1142 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 281/599 (46%), Positives = 405/599 (67%), Gaps = 11/599 (1%) Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 +R++ L G VVH++HG+GR+ GM + E + L +A++ LYV V +LH ++ Sbjct: 447 LRDIKNLTRGDFVVHVDHGIGRFDGMKKITVRDNQQEAVRLNFADNDVLYVNVHALHKLN 506 Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 +Y G L KLG + W + +Q+ ++V++VA +L+ +YA+R A +G+AF D Sbjct: 507 KYTGKEGHQPTLTKLGSEQWEKKKQRTKDQVKEVARDLIKLYAKRKASDGYAFSSDTTWQ 566 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 + SF FE TPDQA+A AV DM +P+ MDRLVCGDVGFGKTEVA+RAAF AV + K Sbjct: 567 REMEASFEFEDTPDQAEATKAVKRDMEEPVPMDRLVCGDVGFGKTEVAVRAAFKAVQDGK 626 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 QVA+LVPTT+LAQQH+D F +R +PV +E++SRFRS EQ+++L ++ +G++DILIGT Sbjct: 627 QVAMLVPTTILAQQHHDTFSERMERFPVNVEVLSRFRSRTEQSKVLEKLEKGQVDILIGT 686 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H++ D+ F DLGLL+VDEE RFGV+ KE+++ MR +D LTLTATPIPRTL ++ G Sbjct: 687 HRITSDDITFDDLGLLVVDEEQRFGVKTKEKLRKMREAIDTLTLTATPIPRTLQFSLLGA 746 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 RDLS+I TPP R + T + +D V+R+AI+ E RGGQV++++N V+ I + AE + Sbjct: 747 RDLSLIETPPPNRQPINTEIHTFDEDVIRDAIVYETSRGGQVFFIHNRVKTIHEVAEMVR 806 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA-D 889 +VP R+ +GHGQM ELE VM DF +++ +VLV T+IIE G+DI ANT+II A + Sbjct: 807 AMVPNVRVGVGHGQMSASELEDVMLDFVNEKLDVLVSTSIIENGLDISNANTMIINHAGE 866 Query: 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHD 949 HFGL++LHQLRGRVGRS +A+ LL P +T DA++RL+A+ DLG+GF +A D Sbjct: 867 HFGLSELHQLRGRVGRSQRKAFCHLLVPSVHGLTDDARERLKAVEQFSDLGSGFDIAMRD 926 Query: 950 LEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDL-------TSQQT 1002 L+IRGAG LLG EQSG +E +G+ Y ++L+ AV L RE +D+ +T Sbjct: 927 LDIRGAGSLLGAEQSGFIEDVGYETYHKILDQAVKEL---REEEFDDVFDGEAVPPGPET 983 Query: 1003 EVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLL 1061 V++ + +P+ ++ D RL+ Y+RI+ A E L ++ E+ DRFG P+P + LL Sbjct: 984 SVDVEEDAYIPESYLRDNTERLNLYRRISDAPDETTLVDLLDEMEDRFGDAPEPVQNLL 1042 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 58/200 (29%), Positives = 97/200 (48%), Gaps = 10/200 (5%) Query: 24 GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT---DQMVMNLADWETLPYDS 80 G+ A L+ + P+ ++ PD A L ++ Q D+ ++ + + PYD Sbjct: 42 GSLPAFLLYHLHREPGAPLCVLTPDEDAAAYLQSDLEQLVGEPDEAILRVPATQKTPYD- 100 Query: 81 FSPHQDIISS----RLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 P Q S+ R L +L G+L+ V + + V P + L ++ G+ + Sbjct: 101 --PDQIADSTPLIERADALQRLAEGFEGILVTSVPAVGELVPPPQAVQRETLTVENGEEI 158 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 + +AL +L + V+ V E GE+A RG +LD+FP P R+DFF DE+D LR FD Sbjct: 159 ALEALADRLLEQDFSPVEFVEEPGEFARRGGILDVFPYAGTYPIRIDFFGDEVDGLREFD 218 Query: 197 VDSQRTLEEVEAINLLPAHE 216 +QR++ + L+P E Sbjct: 219 PQTQRSVSRLTTARLVPNLE 238 >UniRef50_A6DFV9 Transcription-repair coupling factor, MFD (Superfamily II helicase ) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DFV9_9BACT Length = 1062 Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust. Identities = 318/739 (43%), Positives = 442/739 (59%), Gaps = 41/739 (5%) Query: 364 QAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR 423 QA QK +D ++ ++ VF SE E L E+L E ++ Sbjct: 309 QAHQKFLIDRVKSWINKSWSVHVF-CGSEAGVERLNEVL--------------ELGNKKN 353 Query: 424 YLMIGAAEH-GFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLA---ELHI 479 L+ + H GF+ A++ E +L G R ++++ L +NL EL+ Sbjct: 354 LLLYPVSLHYGFIVPELKYAVLSEQELFG----RPIEETKDVSYSSQLQKNLEYEPELNE 409 Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G VH +G+ RY G+ + E+L+L +A+D KLY+P+ S HL+ RY GG + Sbjct: 410 GDFAVHANYGICRYLGIKVKN----SQEFLLLEFADDRKLYLPLDSSHLLMRYIGGKKSV 465 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599 L +LG W ++ KA RD AAELL + A R EG +F D LF +SFP+ Sbjct: 466 PKLARLGTGFWQKSLDKAENSARDYAAELLRLQAAREHSEGISFPKDNHWQSLFEESFPY 525 Query: 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 659 E TPDQ AI V DM + MDRL+CGDVGFGKTEVAMRAAF AV + QVA++VPTT Sbjct: 526 EETPDQLSAIEEVKKDMERAKPMDRLLCGDVGFGKTEVAMRAAFKAVMSSHQVAIVVPTT 585 Query: 660 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVK 719 +LAQQH+ +F R +++P++I +SRF S K+Q Q+L E+AEG++DI++GTH+LLQ D+ Sbjct: 586 VLAQQHFHSFSQRMSDFPIKIATLSRFISKKDQKQVLKEMAEGEVDIVVGTHRLLQKDIN 645 Query: 720 FKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 F+ LGLL+VDEE RFGV KE +K MR NVDIL+++ATPIPRTL ++M+G+RD S I T Sbjct: 646 FQKLGLLVVDEEQRFGVESKEALKRMRVNVDILSMSATPIPRTLYLSMTGLRDFSTILTA 705 Query: 780 PARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 839 P R V+T V + + ++ AI RE+ RGGQVYYL+N V+ I+ A +L PEA I Sbjct: 706 PHNRKPVRTIVTKENDEIIEVAIRRELERGGQVYYLHNRVKTIENVALKLKRQFPEANIL 765 Query: 840 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899 IGHGQM E ELE VMN+F +LVCTTIIE+G+DI ANT++I+RAD FGL+ L+QL Sbjct: 766 IGHGQMDEEELEMVMNEFTDGDGQILVCTTIIESGMDIRNANTMVIDRADRFGLSSLYQL 825 Query: 900 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959 RGRVGR H QAY +LL P +A+ +A++RL A+ GAGF LA DLEIRGAG +L Sbjct: 826 RGRVGRDHRQAYCYLLMPRDEAIMDNAKERLSALRKHTHPGAGFKLAMRDLEIRGAGNML 885 Query: 960 GEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQ----------TEVELRMP 1009 G +QSG + +GF LY +LL+ +V+ LK S+ TS ++ ++P Sbjct: 886 GSQQSGHIAAVGFELYCQLLKKSVEDLKG----SIHQDTSTSFSADFIHYGFQSIDNKIP 941 Query: 1010 SLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQ 1069 L +I + RL YKR ++A NE+ ++ EL DRFG + + I +++ Sbjct: 942 VALTPQYIESDDVRLEMYKRFSTAVKYNEIISLEDELKDRFGNFTSEVKAYVVIHKIKSL 1001 Query: 1070 AQKLGIRKLEGNEKGGVIE 1088 L E E +E Sbjct: 1002 CNLLEFHSCEIKESSLYLE 1020 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 85/154 (55%), Gaps = 8/154 (5%) Query: 70 LADWETLPYDSFSPHQ---DIISSRLSTLYQLPTMQRG---VLIVPVNTLMQRVCPHSFL 123 L + + L Y F+ Q DI R TL QL RG VLI V +L+ V P L Sbjct: 70 LPNVDLLLYPEFNSDQVEYDIDLERSRTLNQL-LQNRGEPQVLICSVASLLCAVTPPGLL 128 Query: 124 HGHALVMK-KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRL 182 + +L++K ++ + + L G+ + QV GE++ RG +LD+F + P R+ Sbjct: 129 NSQSLILKLADEQYAPEKLCEIFTEMGFDNEAQVSLPGEFSLRGGILDVFSPDQKFPVRI 188 Query: 183 DFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHE 216 DFFDDEIDSLR+FDVDSQ+++ + ++ + P + Sbjct: 189 DFFDDEIDSLRLFDVDSQKSIADAKSYQVSPVEK 222 >UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Ruminococcaceae RepID=C7H318_9FIRM Length = 1155 Score = 565 bits (1457), Expect = e-159, Method: Compositional matrix adjust. Identities = 292/618 (47%), Positives = 402/618 (65%), Gaps = 6/618 (0%) Query: 459 QDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAK 518 ++ RR N + L +L+++ G VVH HG+G YAG+ LE G +YL + Y+ Sbjct: 471 ENKRRKKNKNAL-SSLSDIKPGDYVVHQSHGIGMYAGIQRLEVQGAIKDYLKIQYSGSDV 529 Query: 519 LYVPVSSLHLISRY-AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAA 577 LYVPV+ L L+SRY A G EE L KLGG W R R K + ++A EL+++YA+R Sbjct: 530 LYVPVTQLDLLSRYTAPGDEEKVKLAKLGGAEWQRTRAKVKKAAEEMAQELIELYARRRQ 589 Query: 578 KEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV 637 +G+AF D + F F ++ T DQ A + DM +P MDRL+CGDVG GKTEV Sbjct: 590 AQGYAFPPDGDWQNDFETRFEYDETDDQLHATAEIKQDMEKPYPMDRLLCGDVGVGKTEV 649 Query: 638 AMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILA 697 A+RAAF V KQ A+L PTTLLA QHY+ R +PV+I M+SRFR+AK+Q + L Sbjct: 650 ALRAAFKCVMGGKQCALLAPTTLLAWQHYNTLLSRMEAFPVKIGMLSRFRTAKQQKETLR 709 Query: 698 EVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTAT 757 + G +DI++GTH+LL DV+F DLGL+I+DEE RFGV+HKE++K VD+LTL+AT Sbjct: 710 GLQSGSVDIVVGTHRLLSKDVRFHDLGLVIIDEEQRFGVKHKEKLKENFIGVDMLTLSAT 769 Query: 758 PIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYN 817 PIPRTLNMAMSG+RDLS I PP R V+TFV EY+ +++ EA+ +E+ RGGQVYYL+N Sbjct: 770 PIPRTLNMAMSGIRDLSTIEQPPIERQPVETFVLEYNDVILAEAMKKELARGGQVYYLHN 829 Query: 818 DVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 877 V+NI+ A +++LVP AR+ I HG+M E EL V + ++LVCTT+IETGID+ Sbjct: 830 RVDNIESTAAHVSQLVPGARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTLIETGIDV 889 Query: 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 NT+IIE AD GLAQL+Q+RGRVGRS +AYA+ K +T AQKRL AI Sbjct: 890 RNCNTLIIEDADRMGLAQLYQIRGRVGRSGRKAYAYFTFRRDKTLTDIAQKRLSAIREFT 949 Query: 938 DLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDL 997 G+GF +A DL+IRGAG LLG Q G ME +G+ LY+++L A+ +A EP D Sbjct: 950 AFGSGFRIAMRDLQIRGAGSLLGHSQHGHMEAVGYDLYVKMLGQAI--ARAKGEPVQRD- 1006 Query: 998 TSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPA 1057 + ++LR+ + +P+ +I D R+ YKRIA+ +T + ++ ELIDR+G P Sbjct: 1007 -KSECLIDLRVDAYIPEKYIADGPGRIEAYKRIAAIQTPEDAADVLDELIDRYGDPPPSV 1065 Query: 1058 RTLLDIARLRQQAQKLGI 1075 L++++ R QA +G+ Sbjct: 1066 SDLVNVSLARVQATAVGV 1083 Score = 80.5 bits (197), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 88/185 (47%), Gaps = 7/185 (3%) Query: 91 RLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGY 150 RLS L L + + VP L+Q P + L +K G +R+AL +L +AGY Sbjct: 98 RLSVLGALAGGRLNAVCVPAEALLQYTVPRDEFLRNTLTLKPGMVYNREALVARLFAAGY 157 Query: 151 RHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAIN 210 QV G+++ RG ++D++ P R++++DDEIDSL FD+ +QR +E I Sbjct: 158 VRRSQVDGPGQFSVRGDIVDIYAPDMHQPARVEYWDDEIDSLASFDLLTQRRDGSLEKIY 217 Query: 211 LLPAHE--FPTDKAAIELFRSQWRDTFEVKRDP-----EHIYQQVSKGTLPAGIEYWQPL 263 L PA E F + E R + KR E Q+ G +P ++ + + Sbjct: 218 LSPAREVLFGSTAETAEALRGAIKKARGKKRTAMEKATEADLAQLDSGLMPEAMDKYYGI 277 Query: 264 FFSEP 268 + +P Sbjct: 278 RYPQP 282 >UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MQZ9_9FIRM Length = 1175 Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust. Identities = 278/604 (46%), Positives = 409/604 (67%), Gaps = 6/604 (0%) Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 IR+L+++ G VVH +G+G + G+ L A ++ +Y+ + YA LYVPV+ L LIS Sbjct: 486 IRSLSDISQGDLVVHGSYGIGVFEGVQKLTADKVSKDYIKIKYAGTDVLYVPVTQLDLIS 545 Query: 531 RYAG-GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQ 589 RY G G + L+KLG D W +A+ KA +++A EL+++Y++R +GFAF D EQ Sbjct: 546 RYIGSGDADTVRLNKLGTDTWKKAKTKAKAATQEMAKELIELYSRRMKAKGFAFSPDTEQ 605 Query: 590 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH 649 +F D F + T DQ + I + DM + M+RL+CGDVGFGKTEVA+RAAF + + Sbjct: 606 QHIFEDHFSYVETDDQLRCIEEIKHDMMRTAPMERLLCGDVGFGKTEVALRAAFKCIGDG 665 Query: 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIG 709 KQ A+LVPTT+LA QHY R + +R+E++SRFR+AKEQ IL ++ EG++D+++G Sbjct: 666 KQCAILVPTTVLAWQHYQTVLKRMEGFDIRVELLSRFRTAKEQKIILKKLEEGELDLVVG 725 Query: 710 THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSG 769 TH+L+Q DVKFKDLGL+I+DEE RFGV KE++K NVD+LTL+ATPIPRTLNMAMSG Sbjct: 726 THRLVQDDVKFKDLGLVIIDEEQRFGVNDKEKLKEAFTNVDVLTLSATPIPRTLNMAMSG 785 Query: 770 MRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 +RD+S+I TPP R + T+V E+D V+ +AI +E+ R GQVYY++N +E+I A + Sbjct: 786 IRDMSVIETPPGDRHPITTYVVEHDRGVIAQAINKELRRNGQVYYVHNRIESIYSCAADI 845 Query: 830 AELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 +VPEA I I HG+M E EL V +VLVCTT+IETG+D+P NT+IIE AD Sbjct: 846 HSMVPEANIGIAHGRMSEEELLNVWRRLIEGEIDVLVCTTLIETGVDVPNCNTLIIENAD 905 Query: 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHD 949 GLAQLHQLRGRVGR++ +AYA+ K ++ A KRL+AI G+GF +A D Sbjct: 906 CMGLAQLHQLRGRVGRTNRRAYAYFTFRRGKVLSEIATKRLDAIREFTRFGSGFRIAMKD 965 Query: 950 LEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMP 1009 LEIRGAG +LG+ QSG + ++G+ +Y++LL A+ + G+ P + + + +++R+ Sbjct: 966 LEIRGAGSVLGQSQSGHLASVGYDMYIKLLNEAI-LEQQGKAPEI----TPECLIDIRID 1020 Query: 1010 SLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQ 1069 + +P+ +I + R+ Y++IA + + + ++ ELIDR+G +P L+++A+LR+ Sbjct: 1021 AFIPEKYISNQAQRVDCYRKIAMIENDEDAYDVTDELIDRYGDVPRAVEGLIEVAKLRRI 1080 Query: 1070 AQKL 1073 AQK+ Sbjct: 1081 AQKM 1084 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 63/258 (24%), Positives = 125/258 (48%), Gaps = 12/258 (4%) Query: 36 ERHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNLADWETLPYDSFSPHQDIISSRLST 94 E+ PV++I +A +L ++I+ D + D+ + Q+ R+ T Sbjct: 49 EKLPSPVLVITESEASAAKLTEDINTMCGDTAAYQFPASDLTLADTEAQSQEYEYKRIET 108 Query: 95 LYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVD 154 L + + ++I +Q P L H + +K G + D L T L SAGY D Sbjct: 109 LSAALSGKARLIISSSEAAVQLTVPKDVLEKHTVTLKAGDEIKLDELATMLVSAGYTRCD 168 Query: 155 QVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPA 214 + G+++ RG+L D++P+ S+ P R++ + DEID++ FD+D+QR ++ V+++++ P Sbjct: 169 MIEGKGQFSFRGSLADIYPVSSDYPVRIELWGDEIDTVASFDIDTQRRIDTVKSVSITPC 228 Query: 215 HEFPTDKAAIE-----LFRSQWRDTFEVKRDPEHIYQQVSK---GTLPAGIEYWQPLFFS 266 E ++ + L ++ + + I + +++ G + + PL + Sbjct: 229 GETIFEEGVLSGTLQTLLEKTEKNKKKNDEAAKRIRRDIARLRDGISVCCLNRYFPLCYK 288 Query: 267 EPLPPLFSYFPANTLLVN 284 EP +F Y A+TL+V+ Sbjct: 289 EP-GSIFDY--ASTLIVS 303 >UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superfamily II helicase) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DY76_METI4 Length = 1060 Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust. Identities = 304/722 (42%), Positives = 442/722 (61%), Gaps = 30/722 (4%) Query: 371 LDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAA 430 L+AL +++E VV V +EG L E+L I+ ++I+ RG Sbjct: 312 LEALGRWIEK-QWEVVIFVNNEGEESRLKEILNNQGISTEKILFSKSPLLRG-------- 362 Query: 431 EHGFVDTVRNLALICESDLLG----ERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 F L+++ ++++ G +++ R Q + G VVHL Sbjct: 363 ---FCWPEAKLSILTDAEIFGRYQNQKILLRSQQKNDYFRAPLGSDIFEQWKEGDIVVHL 419 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLG 546 + G+ ++ G+ T+E G E + L + AKLYVP+ HLI+RY GG ++ L LG Sbjct: 420 QKGICKFKGIKTIE--GTNTEMVELEFDQQAKLYVPIDQAHLIARYIGGTKKLPKLDSLG 477 Query: 547 GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606 G+ W +A++ A + V D+A +LL I A+R EGFAF D + + F ++F +E TPDQ Sbjct: 478 GNRWIKAKRAAQKAVTDLAEKLLKINAEREVLEGFAFPQDDQWQKEFEEAFIYEETPDQL 537 Query: 607 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 666 +AI DM MDRL+CGDVGFGKTEVA+RA F AV KQ +L PTT+LA+QH+ Sbjct: 538 KAIEETKKDMESKRPMDRLICGDVGFGKTEVAIRAIFKAVMGGKQAVLLTPTTVLAKQHF 597 Query: 667 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 + R+RFA++P+ ++ RF E+ +ILA + EG +D+++GTH+LL +DV+FKDLGL+ Sbjct: 598 NTLRERFADYPIHTALLCRFVKNSEEKEILAGLKEGTVDVVVGTHRLLSADVEFKDLGLI 657 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 ++DEE RFGV KE+ K +D+L L+ATPIPRTL +AM+G RD+S+I TPP R + Sbjct: 658 VIDEEQRFGVLQKEKWKEKFRFIDVLLLSATPIPRTLYLAMAGARDMSLIETPPPNRFPI 717 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 +T V YD V+R+AI RE+ RGGQVY+L+N + I+K A RL L+P +I IGHG+M+ Sbjct: 718 ETIVGPYDERVIRQAIERELNRGGQVYFLHNRIRTIEKVASRLKSLLPSIKIDIGHGRMK 777 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 + ELE VM F + +VL+ T+IIE G+DIP ANTIII+RAD FGLA L+QLRGRVGRS Sbjct: 778 KHELEEVMERFVEGKIDVLLATSIIENGLDIPNANTIIIDRADLFGLADLYQLRGRVGRS 837 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 + +AYA+LL P + +DA+KR++A+ LG GF +A DLEIRGAG LLG QSG Sbjct: 838 NQKAYAYLLLPRDLFIQSDAKKRIKAMQEHSQLGTGFQIALRDLEIRGAGNLLGTSQSGH 897 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMP---------SLLPDDFI 1017 + +IGF LY +LL+ A+ ++ G+E E L + ++ +P + +P ++ Sbjct: 898 IASIGFELYCKLLKKAIQKIQ-GKE--TEPLIDCRLSLDFLLPEPGGGRHALAYIPFSYM 954 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 RL Y+++A A ELEEIK DR+G P+P L + +R A + GI + Sbjct: 955 ERRQERLHAYRQLAEASQPEELEEIKKSWKDRYGPWPEPVEHLFSLVEIRIIAARKGIER 1014 Query: 1078 LE 1079 +E Sbjct: 1015 VE 1016 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 85/185 (45%), Gaps = 22/185 (11%) Query: 30 LVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADW----------ETLPYD 79 +A + GP+++IA +++ T+++ + L W E +P + Sbjct: 67 FLASFLRVYRGPLLVIAENIKK-----------TNEIALGLECWGSPYLILPEVEPVPAE 115 Query: 80 SFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRD 139 S P ++ RLST Y L G++I + + + L L + R Sbjct: 116 SL-PDPTFLAERLSTAYSLLDFPSGIIITTEQAMEEALPSPELLKEKRLPLAVENSFDRK 174 Query: 140 ALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDS 199 A+ +L +AGY VD V G++A RGA++D F S P R+++ + + SLR FD + Sbjct: 175 AVIEKLVTAGYERVDSVDCRGQFAVRGAIIDTFCWDSCYPLRMEWEGNRLISLRQFDPIT 234 Query: 200 QRTLE 204 QR+ + Sbjct: 235 QRSFK 239 >UniRef50_A6L2L5 Transcription-repair coupling factor n=49 Tax=Bacteria RepID=A6L2L5_BACV8 Length = 1121 Score = 558 bits (1439), Expect = e-157, Method: Compositional matrix adjust. Identities = 291/723 (40%), Positives = 445/723 (61%), Gaps = 26/723 (3%) Query: 415 LDEASDRGRYLMIGAAEH-GFVDTVRNLALICESDLLGERVARR--RQDSRRTINPDTLI 471 +E D ++ + H GF D V + + +R + R D R+ + Sbjct: 371 FEERGDHITFIPVNKTLHEGFTDNVLKSCFFTDHQIF-DRFHKYNLRSDKARSGKVALTL 429 Query: 472 RNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISR 531 + L++ G VVH++HGVGR+ G+ + G T E + L Y N+ ++V + SLH IS+ Sbjct: 430 KELSQFEPGDFVVHIDHGVGRFGGLVRIPNGNTTQEVIKLIYQNEDVVFVSIHSLHKISK 489 Query: 532 YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 591 Y G E L+KLG AW + +++ K++D+A +L+ +Y+QR ++GF++ D Sbjct: 490 YKGKEGETPRLNKLGTGAWEKMKERTKSKIKDIARDLIRLYSQRKQEKGFSYSPDSFMQH 549 Query: 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ 651 SF +E TPDQ +A +DM MDRLVCGDVGFGKTEVA+RAAF AV ++KQ Sbjct: 550 ELEASFIYEDTPDQLKATQDAKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQ 609 Query: 652 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 711 VAVLVPTT+LA QH+ F +R ++P +++ +SR RSAK+ ++I+ E+A+GKI+IL+GTH Sbjct: 610 VAVLVPTTVLAYQHFQTFSERLKDFPCKVDYLSRARSAKDVSRIVKELADGKINILVGTH 669 Query: 712 KLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR 771 K++ VKFKDLGLLI+DEE +FGV KE+++ M+ NVD LT+TATPIPRTL ++ G R Sbjct: 670 KIIGKSVKFKDLGLLIIDEEQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSLMGAR 729 Query: 772 DLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 831 DLS+I TPP R ++T V ++ ++ EAI E+ R GQV+++ N ++N+ + + Sbjct: 730 DLSVIQTPPPNRYPIQTEVHTFNEDIITEAINFEMSRNGQVFFVNNRIQNLVELEAMIKR 789 Query: 832 LVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 +P+ R+ IGHGQM +LE+++ DF + ++VL+ TTIIE+GIDIP ANTIII +A +F Sbjct: 790 NIPDCRVCIGHGQMEPEKLEKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNF 849 Query: 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLE 951 GL+ LHQ+RGRVGRS+ +A+ +LL P ++T +A++RL+AI + DLG+G +A DL+ Sbjct: 850 GLSDLHQMRGRVGRSNKKAFCYLLAPPLTSLTPEAKRRLQAIENFSDLGSGIHIAMQDLD 909 Query: 952 IRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK--------------AGREPSLEDL 997 IRGAG +LG EQSG + +G+ Y ++L AV LK AG E + Sbjct: 910 IRGAGNMLGAEQSGFIADLGYETYQKILAEAVKELKEDEFADLYAEELQAAGEEKISGEN 969 Query: 998 TSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPA 1057 + +VE + L P+++IP + R+ Y+ + + + +L K L DRFG +P Sbjct: 970 FVDECQVESDLELLFPNEYIPSSSERMLLYRELDGLELDKDLLAFKARLEDRFGKVPPEG 1029 Query: 1058 RTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAW-------LIGLLQKQPQH 1110 LL I LR+ A++LG+ K+ + G + F N +P + +I + K P++ Sbjct: 1030 LELLRIVPLRRLAKRLGVEKV-FLKAGRMTLFFISNQESPYYQSAAFGKVIDYMSKNPRY 1088 Query: 1111 YRL 1113 L Sbjct: 1089 CNL 1091 Score = 99.0 bits (245), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 111/229 (48%), Gaps = 11/229 (4%) Query: 18 LLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNLADW--E 74 LG L +A A V+ + V + D++ A + +++Q D+ ++ Sbjct: 32 FLGGLHASAAALFVSSFLRENKQTFVFVLGDLEEAGYFYHDLTQVNGDEHILFFPSSYRR 91 Query: 75 TLPYDSFSPHQDIISSRLSTLYQLPTMQRG---VLIVPVNTLMQRVCPHSFLHGHALVMK 131 + Y +I+ + + L +Q+G ++ L ++V L L + Sbjct: 92 AVKYGQKDAANEILRTEV-----LSRLQKGDPLCVVTYPEALAEKVVSQEVLMDKTLKLG 146 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 G+ + + + L G+ HVD V E G+YA RG+++D+F SE PYR+DFF DE+DS Sbjct: 147 VGEHVDTEFITEVLAGYGFEHVDYVYEPGQYAVRGSIIDVFSFASEYPYRIDFFGDEVDS 206 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 +R F+V++Q + E+ ++I ++P DK+ + F R+T +D Sbjct: 207 IRTFEVENQLSKEKKQSIAIVPELTNAADKSGVSFFEFIPRETVLAMKD 255 >UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Coriobacteriaceae RepID=C8WGM0_EGGLE Length = 1161 Score = 554 bits (1428), Expect = e-156, Method: Compositional matrix adjust. Identities = 280/611 (45%), Positives = 402/611 (65%), Gaps = 2/611 (0%) Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G VVH HGV + + + G +YL+L Y+ KLYVPV L ++RY G + Sbjct: 497 GDYVVHAAHGVAYFKELVRRDVDGTARDYLLLEYSEGDKLYVPVEQLDRVTRYVGPEGAS 556 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599 L +L WSRA KA + + +A +L+D+YA+RA+ +G+ F D + ++FP+ Sbjct: 557 PRLTRLNTADWSRALAKARKATKKLAFDLVDVYARRASVQGYRFGPDTAAQREMEEAFPY 616 Query: 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 659 + TPDQ AI V +DM MDRLVCGDVGFGKTEVA+RAAF A + KQV VL PTT Sbjct: 617 QETPDQLAAIADVKADMQSAKPMDRLVCGDVGFGKTEVALRAAFKATQDSKQVMVLCPTT 676 Query: 660 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVK 719 +LAQQHY NF++R + VR+E++SRFR+ +Q L EG +D+L+GTH+LL DV Sbjct: 677 ILAQQHYTNFKERCEPFGVRVEVLSRFRTPAQQAAALKGFQEGDVDVLVGTHRLLSRDVN 736 Query: 720 FKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 DLGL+I+DEE RFGV HKE++K +R ++D+LTL+ATPIPRT+ M++SG+RD+S+I TP Sbjct: 737 PHDLGLVIIDEEQRFGVGHKEQMKNLRESIDVLTLSATPIPRTMQMSLSGVRDMSLILTP 796 Query: 780 PARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 839 P R V+ V E+D VV AI RE+ RGGQVYY+ N V ++++A R+ EAR+ Sbjct: 797 PDERRPVEVHVGEWDPDVVSGAIRRELARGGQVYYVSNRVRSMEEAVRRVTAAAGEARVG 856 Query: 840 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899 + HGQM + +LERVM DF +VLV TTIIE+GID P NT+IIE + +GLAQ++QL Sbjct: 857 VAHGQMSKEQLERVMEDFSAGELDVLVATTIIESGIDNPHTNTLIIEDSQRYGLAQMYQL 916 Query: 900 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959 +GRVGRS QAYA+ + P +T +A RL A+ DLG+G +A DLEIRGAG LL Sbjct: 917 KGRVGRSCTQAYAYFMFPEHMELTEEAAARLTALNEHTDLGSGMRIAMRDLEIRGAGSLL 976 Query: 960 GEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMP--SLLPDDFI 1017 G EQSG+M +GF L+ ++L AV A + G +++ L +++ + +P + LP++++ Sbjct: 977 GAEQSGNMSAVGFDLFAQMLNQAVSATREGDLKAMDALPPALSDITVNVPGHTYLPEEYV 1036 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 PD + R+ +Y+RIASA TE +E+++ +L D+ +P A+ LL+ AR++ A + I+ Sbjct: 1037 PDADERVLWYRRIASAATEQAVEDVRADLADKRPDMPQAAKNLLEKARIKAYANEHHIKT 1096 Query: 1078 LEGNEKGGVIE 1088 + V+E Sbjct: 1097 VSVTAGKLVVE 1107 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 51/230 (22%), Positives = 97/230 (42%), Gaps = 12/230 (5%) Query: 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLAD 72 AGE LG + A + A A R +V++A + + D+ VM + Sbjct: 25 AGEDGTLGVASSARPFLVAARFAHRPQPTLVVVAGEDAAVAFSRSLAAYLGDERVMRFPE 84 Query: 73 WETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCP-HSFLH------- 124 P+ ++ R+ ++ L + + V++ L++ + P S +H Sbjct: 85 RSDYPFVPKPSDPAQVARRMEAVHALASGREVVVVASARALVRALPPAGSDVHVPVALSA 144 Query: 125 GHALVMKKGQRLSR----DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 G L G + + + L+ GYR+ ++ G +A RG +D+FP P Sbjct: 145 GRELAAMPGAQAASVTEFEDFAHALEERGYRNTGELDGPGTFAVRGGTIDVFPGNLVYPV 204 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQ 230 RLDFF DE++ +R + +T++ + +++ P EF K + R + Sbjct: 205 RLDFFGDELEEIRRIVPTTGQTIQALPDVSIYPVVEFSCSKRGLARARQK 254 >UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9Q8_9ACTN Length = 1198 Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust. Identities = 366/1092 (33%), Positives = 565/1092 (51%), Gaps = 75/1092 (6%) Query: 30 LVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMNLADWETLPYDSFSPHQDII 88 +VA A A P++L+ A R ++ + +V D LP+ S ++ Sbjct: 41 IVAACACAQARPILLVVSGEDAADRAARILAGWLGPDVVFRYPDRADLPWSDKSASAEVC 100 Query: 89 SSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSA 148 +R L+ L QR V++ L++R+ P + + G L AL QL Sbjct: 101 GTRAEALFHLAQPQRCVVVASARALLRRLPPKTSSFAQQQKICIGDELDIYALARQLVLW 160 Query: 149 GYRH---VDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEE 205 GY V +V E G + G +D+F + P R+ FF DE+D +R + +T+ Sbjct: 161 GYVSTTVVKEVREPGYFCVHGDSVDVFSPCEQAPVRISFFGDEVDEIRKVVPSTGQTISS 220 Query: 206 VEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFF 265 + A E I+ +++ D + D E + Q+ + ++ + P + Sbjct: 221 QQQAVFYAARELELSPETIQCAKNKLYDKAQEDLDTERVLDQIEESVYTNELDAYLPYLY 280 Query: 266 SEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFEN--RGVDPMRPLLPPQSLWLR 323 P+ +++ + SA A+ A F++ R D + + + L Sbjct: 281 -----------PSTASVIDY--MHPSALVVLAEPRALFDDCQRAYDELMHASTEKRVSL- 326 Query: 324 VDELFS---ELKNWPRVQLKTEHLPTKAANA-NLGFQKLPDLAVQAQQKAPLDALRKFLE 379 D L++ EL + +L L + A N + D+A A + + +R+ L Sbjct: 327 -DGLYTSPVELDFGKQQRLSLSSLARQGMRASNHVVTEQCDIAGSASKM--IGRIRELLA 383 Query: 380 TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEH------- 432 + VVFSV G R AL ++ + I D + + A EH Sbjct: 384 N-NSAVVFSVPDRGARRAL-----QLSFTDENISFEDASEHASEHASKRAPEHESEHNQD 437 Query: 433 ----------------------GFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTL 470 G V +LA+ SDL ++ + + I+P L Sbjct: 438 LEAQNLPLPRNKVVFFADPINAGIVIPSAHLAIFSVSDLNAHLNNKKHRFQK--IDPTKL 495 Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 G VVH HG+ + + E G +Y +LTYA D KLYVP + I+ Sbjct: 496 TFPFKP---GDYVVHATHGIALFQKIVQQEVAGKKRDYFLLTYAQDDKLYVPFEQVDKIT 552 Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 RY G L +L WSRA +A + + +A +L+D+Y +R+ +GF+F D Sbjct: 553 RYIGPDGSTPRLTRLNSADWSRACTRARKSAQKMAFDLVDLYTRRSTIKGFSFSFDTPAQ 612 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 + SFP+ T DQA+A++ + +DM MDRL+CGDVGFGKTEVA+RAAF +HK Sbjct: 613 EDMETSFPYTLTRDQARALDDIKADMQSATPMDRLLCGDVGFGKTEVALRAAFKCCQDHK 672 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 QV VL PTT+LAQQH++ F +RF + V + ++SRF EQ + L + G +D+LIGT Sbjct: 673 QVMVLCPTTILAQQHFETFYERFTPFEVNVRVLSRFIKPAEQKRTLEGFSTGDVDVLIGT 732 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H+LL SDV +LGL+I+DEE RFGV+HKE++K +R VD+LTL+ATPIPRT+ MAMSG+ Sbjct: 733 HRLLSSDVNPSNLGLIIIDEEQRFGVQHKEQLKNIREQVDVLTLSATPIPRTMQMAMSGV 792 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 RD+S+I + PA R V+ V E+DS ++ +AI E+ R GQVYY+ N V+ I A ER+ Sbjct: 793 RDMSLILSAPAGRKPVRVHVGEWDSDLISDAIRLELARKGQVYYVSNRVKTIDDALERVH 852 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 PEAR+ + HGQM ++E VM F +VLV TTIIE+GID P NT+IIE + Sbjct: 853 ACAPEARVGVAHGQMSPSQIEEVMLLFEEHEIDVLVATTIIESGIDNPHTNTLIIEDSQR 912 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 GLAQL+QL+GRVGR QAYA+ + P + +T +A++RLEAI ++LG+G +A DL Sbjct: 913 LGLAQLYQLKGRVGRGRVQAYAYFMFPPTEPLTEEARRRLEAIYEHQELGSGMRIAMKDL 972 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS 1010 EIRGAG L+G EQ G++ +GF L+ ++L +AV RE E + EV + +P+ Sbjct: 973 EIRGAGSLMGAEQHGNLSGVGFDLFTQMLSDAV------REAKGETQHTDLAEVVINIPA 1026 Query: 1011 --LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQ 1068 +D++P+++ R+ Y+R+A+A +E++ ++ E +D G L L AR+R Sbjct: 1027 DFYFSEDYVPEIDKRVLLYRRLAAATELSEVDALEKETLDTHGALEPAGVNLFGRARIRI 1086 Query: 1069 QAQKLGIRKLEG 1080 +A +LG++ + Sbjct: 1087 RAARLGVQTVSA 1098 >UniRef50_C3WG56 Transcription-repair coupling factor n=6 Tax=Fusobacterium RepID=C3WG56_FUSMR Length = 988 Score = 552 bits (1423), Expect = e-155, Method: Compositional matrix adjust. Identities = 289/672 (43%), Positives = 441/672 (65%), Gaps = 26/672 (3%) Query: 440 NLALICESDLLGERVARRRQDS--RRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMT 497 NL ++ + +L G RV R ++D +R +N+ E+ G ++H +GVG Y G+ Sbjct: 309 NLLVLTDRELKGIRVRREKKDKGFQRY-------KNITEIQEGNYIIHENYGVGLYLGIE 361 Query: 498 TLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKA 557 ++ +YL + YA + KL+VP+ + I +Y E ++ LG + + R+K Sbjct: 362 IIDGH----DYLKIKYAGEDKLFVPIEGIGKIGKYISIDGEIPEIYNLGRKGFRKKREKI 417 Query: 558 AEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMC 617 AE++ A E+++I A+R + G++F D + F +SFP++ TP Q QAI V DM Sbjct: 418 AEEMLQFAKEIVEIQARRDLEAGYSFAPDNLWQEEFEESFPYKETPSQLQAIEDVKRDME 477 Query: 618 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 MDR+VCGDVG+GKTEVA+RAAF A KQV ++VPTT+LAQQHY+ F +R N+P Sbjct: 478 SSRIMDRVVCGDVGYGKTEVAIRAAFKAAIEGKQVVLMVPTTVLAQQHYERFTERMKNYP 537 Query: 678 VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVR 737 + IE++SR ++KEQTQ L ++ EG +DI+IGTH++L DV+FKDL L+I+DEE +FGV+ Sbjct: 538 INIELLSRLLTSKEQTQTLKKIKEGGVDIVIGTHRILSEDVEFKDLRLVIIDEEQKFGVK 597 Query: 738 HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV 797 KE++K +R+ VD+LTLTATPIPRTLN+A+ G+RDLS+I TPP R + TF E Sbjct: 598 AKEKLKKLRSKVDVLTLTATPIPRTLNLALLGIRDLSVIDTPPEGRKPINTFFVEGLEKN 657 Query: 798 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA-RIAIGHGQMRERELERVMND 856 +RE I++EI R GQV+Y++N V+ I+K + L +++PE +I HGQM R+++ + + Sbjct: 658 IREIIMKEIAREGQVFYIFNSVKGIEKKTQELRKILPEYLKIDFVHGQMTPRDIKEKIKE 717 Query: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 F + ++LV TTIIE GIDI ANT+II+RAD GL+Q++QLRGRVGR + Q+Y +LLT Sbjct: 718 FENGEIDILVATTIIENGIDIENANTMIIDRADKLGLSQIYQLRGRVGRGNRQSYCYLLT 777 Query: 917 PHPKAMTTDAQKRLEAIASLEDL-GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLY 975 + T A++R E+I +LE++ G G L+ D+ IRGAGE+LGE+Q G +ET G++LY Sbjct: 778 KEYQ--TKKAKEREESIKNLEEIDGGGLQLSMEDMRIRGAGEILGEKQHGILETFGYTLY 835 Query: 976 MELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKT 1035 M++L+ +D +K E ++D+ E+++ P+ +P+++I + + ++ Y+RI K+ Sbjct: 836 MKMLQEEIDKIKGRFEEDIDDI-----EIKVNYPAFIPNEYI-EKDEKIKVYRRITEVKS 889 Query: 1036 ENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK-LEGNEK-GGVIEFAEKN 1093 ELE IK ELIDRFG +P A+ L+ +A+KLGI+ LE K +I+F + Sbjct: 890 IIELENIKDELIDRFGKMPVEAQGFFRYIGLKFRAKKLGIKNALEIKGKVESIIKFN-SD 948 Query: 1094 HVNPAWLIGLLQ 1105 VN L+ L+Q Sbjct: 949 KVNFDVLLKLIQ 960 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/93 (30%), Positives = 55/93 (59%), Gaps = 1/93 (1%) Query: 114 MQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFP 173 ++ + FL G ++ G+ L L L+ +GY V E +Y+ RG +LD+FP Sbjct: 83 LEAILREYFLEGKRYEIEIGKSLDIKELENSLEESGYNKEYMVEERNQYSMRGDILDIFP 142 Query: 174 MGSELPYRLDF-FDDEIDSLRVFDVDSQRTLEE 205 S+ P R++F F++E++ + FD+++Q+++E+ Sbjct: 143 KNSKYPVRIEFSFNNEVERIAYFDIETQKSVEK 175 >UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0762 Length = 1175 Score = 551 bits (1420), Expect = e-155, Method: Compositional matrix adjust. Identities = 301/717 (41%), Positives = 433/717 (60%), Gaps = 9/717 (1%) Query: 428 GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLE 487 G+ HGF+ ++ + +L G + R+ S + I + EL G VVH Sbjct: 461 GSLSHGFIYEDLEFVILSDRELFG----KDRKVSTKKKYKGAKIESFMELAEGDYVVHEN 516 Query: 488 HGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGG 547 HG+G + G+ + G+ + L + Y LYV ++ + L+ +Y G L+ LG Sbjct: 517 HGIGIFIGIEKIVTEGVARDNLKINYEG-GTLYVNINQMDLVQKYVGSEGAAPKLNMLGN 575 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607 W +A+ KA V+++A EL+ +Y++R GFA++ D F +SFP+E T DQ Sbjct: 576 PEWKKAKSKARNSVKNIAKELILLYSKRENSRGFAYEKDSIWQTEFEESFPYEETSDQID 635 Query: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667 AI AV +DM MDRL+ GDVG+GKTEVA+RAAF A+ NHKQVA LVPTT+LAQQH++ Sbjct: 636 AIQAVKTDMESDKIMDRLILGDVGYGKTEVAIRAAFKAILNHKQVAYLVPTTVLAQQHFE 695 Query: 668 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727 F R + + + ++SRFR+ K+ + L + G IDI+IGTH+LL DV FKDLGLLI Sbjct: 696 RFLKRMESQAISVGVLSRFRTPKQIKETLKGIESGMIDIVIGTHRLLSKDVLFKDLGLLI 755 Query: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787 +DEE RFGV HKE++K MR VD LTLTATPIPRTL M++ G+RD+S+I P+ R AV+ Sbjct: 756 IDEEQRFGVAHKEKLKQMRTEVDALTLTATPIPRTLQMSLIGIRDMSVIEEAPSERRAVQ 815 Query: 788 TFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 847 T+V E +++AI REI R GQVY+L V+NI + A +L+ +VP A++A+ HGQM Sbjct: 816 TYVLEESDDFIKDAINREINREGQVYFLSXRVQNIVEKAAQLSNMVPXAKVALAHGQMSV 875 Query: 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 RELE +M F ++ NVLVCTTIIETG+DI ANTIII AD GL+QL+QLRGRVGRS Sbjct: 876 RELEAIMERFENKEINVLVCTTIIETGLDIANANTIIIVDADKMGLSQLYQLRGRVGRSD 935 Query: 908 HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSM 967 QAYA+LL ++ A+KRL AI LGAGF +A DLEIRGAG+LLG QSG M Sbjct: 936 KQAYAYLLYKRDXILSEVAEKRLNAIKQFTQLGAGFKIAMRDLEIRGAGDLLGASQSGHM 995 Query: 968 ETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFY 1027 IG+ LY ++L A+ + G +T +E+++ + + ++I D +L Y Sbjct: 996 AKIGYELYSKMLREAILIEQGGGIEE----EKIETTIEIKINAFISSNYIKDEIQKLDIY 1051 Query: 1028 KRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVI 1087 K+IAS +TE++ + E+ DR+G P LL+IA ++ A I + N ++ Sbjct: 1052 KKIASIRTEDDYLNVMDEITDRYGDPPTTVLNLLNIAMIKSSANSQNISLISQNIHMLML 1111 Query: 1088 EFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 +F + L+ + +D RL F +K +++V+Q + +++E Sbjct: 1112 KFTHEVEGKVLSLLANKYGKILRINIDKDIRLFFNTQEIPQKEYLDFVKQILCDIKE 1168 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/229 (23%), Positives = 107/229 (46%), Gaps = 5/229 (2%) Query: 18 LLGELTGAACATLVAEIAE-RHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETL 76 ++G + AA L+ +A+ P V+ + + + + D F + V+ + L Sbjct: 32 IVGGIIEAAKGHLIYTLADFLDTCPFVIASSEEEAEVVKEDLAFLFGSENVIYYPSRDIL 91 Query: 77 PYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 Y++ +I+ R+ L + +++ ++ L+ + P +V+K G + Sbjct: 92 FYNADVHSNEIVKQRIEALDAIIKNNEAIIVTTIDALLNPLSPKDEFIRAQIVIKIGDTV 151 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 ++ QL GY V +V G++A RG ++D+F + P R++ +D EIDS+R F Sbjct: 152 DLQSMSYQLIENGYERVGRVEVVGQFAIRGGIMDIFSPANNTPIRMELWDTEIDSIRRFS 211 Query: 197 VDSQRTLEEVEAINLLPAHE--FPTDK--AAIELFRSQWRDTFEVKRDP 241 +QRT++ +E + P E P +K AI + + + T V R+ Sbjct: 212 PITQRTIDNIERAYIYPNQEIIIPREKLLKAIPIIEKELKATIGVLRES 260 >UniRef50_A6NQ58 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQ58_9BACE Length = 1169 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 291/616 (47%), Positives = 404/616 (65%), Gaps = 11/616 (1%) Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 + A+L +G VVH HG+GRY GM + GI +Y+ + YA LYVP + L L+S+Y Sbjct: 487 SYADLSVGDLVVHEHHGIGRYQGMVKMPVDGIQKDYVKIAYAGADVLYVPATQLDLVSKY 546 Query: 533 AGG---AEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQ 589 G A+E L KLGG W +A+ +A + V+D+A L+ +YAQR + GFAF D E Sbjct: 547 IGAGEDAQETKKLSKLGGADWEKAKTRAKKAVKDLAKGLIQLYAQRQRQPGFAFSPDSEW 606 Query: 590 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH 649 + F + F + T DQ + I + DM P MDRL+CGDVG+GKTEVA RA V + Sbjct: 607 MREFEEQFEYTETDDQLRCIAEIKGDMEAPRPMDRLLCGDVGYGKTEVAFRAIMKCVLDG 666 Query: 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIG 709 KQ A+LVPTT+LA+QHY + + RFA +PV I+++SRFR+ + + L V G+ID+LIG Sbjct: 667 KQAAILVPTTVLARQHYLSAKQRFAKYPVEIDVVSRFRTPAQMKETLRRVEAGQIDLLIG 726 Query: 710 THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSG 769 TH+L Q DVKFKDLGLL++DEE RFGV HKE++K M VD+LTL+ATPIPRTLNMA+SG Sbjct: 727 THRLFQKDVKFKDLGLLVIDEEQRFGVAHKEKLKEMSRQVDVLTLSATPIPRTLNMALSG 786 Query: 770 MRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 +RD+S + PP+ R V+T+V E+D V+ +A+ RE+ RGGQVYYL+N VE I + A R+ Sbjct: 787 IRDMSTLEEPPSDRQPVQTYVLEHDWGVLFDAMRRELERGGQVYYLHNRVETITRTAARI 846 Query: 830 AELVPE-ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 E++ E + + HG+M + EL VM +VLVCTTIIETGIDI ANT+IIE A Sbjct: 847 REMLGEDVTVGVAHGKMSQEELNDVMTRMSEGEVDVLVCTTIIETGIDISNANTLIIEDA 906 Query: 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATH 948 D GLAQLHQ+RGRVGRS +AYA+L K ++ A KRL AI + G+GF +A Sbjct: 907 DKMGLAQLHQIRGRVGRSSRRAYAYLTFRRGKVLSEVASKRLGAIREFAEFGSGFKIAMR 966 Query: 949 DLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRM 1008 DLEIRGAG +LG EQSG + ++G+ LY++LLE AV E + + +L + Sbjct: 967 DLEIRGAGNVLGPEQSGFLMSVGYDLYLKLLEEAVL-----EERGEKAQIPAECSADLSV 1021 Query: 1009 PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQ 1068 + +PD ++P R+ Y+RIA+ ++E + +++ ELIDR+G P P L+ +A +R Sbjct: 1022 AASIPDRYVPSPEQRMDLYRRIAAIRSEEDADDLTDELIDRYGDPPRPVNNLIAVALMRA 1081 Query: 1069 QAQKLGIRKLEGNEKG 1084 A GI ++ ++KG Sbjct: 1082 DAAACGITEI--SQKG 1095 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 24/219 (10%) Query: 16 QRLLGELTGAACATLVAEIAERH-----AG-------PVVLIAPDMQNALRLHDEISQFT 63 QRL + G C ++ H AG VV++ D A R+ +++ T Sbjct: 9 QRLAAAVDGGGCPAAFTGLSPVHRAHMAAGLRQALGRSVVVLCADEAEADRMARDLAFLT 68 Query: 64 DQMVMNLADWETLPYDSFSPHQDIISSR------LSTLYQLPTMQRGVLIVPVNTLMQRV 117 + V L E F+ H + SR LS L L + +L+ + ++R Sbjct: 69 GEQVRTLTARE------FTFHHAAVVSRQWEHKRLSVLRALAAGECPLLVCTIEGALERT 122 Query: 118 CPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE 177 P + L + ++ G+ + L L +AGY +QV G++A RG +LD + + Sbjct: 123 IPKTLLTQASQCLRVGESYDLNELADTLTAAGYTRCEQVEGVGQFALRGGILDFYSPAED 182 Query: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHE 216 P R++FF DE DS+ +FDV++QR +E ++ +LPA E Sbjct: 183 GPIRVEFFGDEADSMGLFDVNTQRRVENRKSAEILPAAE 221 >UniRef50_Q5SJW3 Transcription-repair coupling factor n=3 Tax=Thermus RepID=Q5SJW3_THET8 Length = 978 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 292/599 (48%), Positives = 392/599 (65%), Gaps = 7/599 (1%) Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 L G ++H EHGVG+Y G+ T E G+ +YL+L Y + KLY+PV L L+ R+ G Sbjct: 319 LSPGDYLIHPEHGVGQYLGLETREVLGVKRDYLVLRYKGEGKLYLPVEQLPLLKRHPGTT 378 Query: 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596 ++ L LG + W RA+++A + V ++A LL + A+R A G AF E L Sbjct: 379 DDPPELSSLGKNEWQRAKERARKDVEELAGRLLVLQAKRKATPGRAFPPLPEWDPLVEKG 438 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 FP+E TPDQ +A+ VL D+ P MDRLV GDVGFGKTEVA+RAA V + QVA LV Sbjct: 439 FPYELTPDQKRALEEVLRDLESPHPMDRLVSGDVGFGKTEVALRAAHRVVGHGAQVAFLV 498 Query: 657 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS 716 PTTLLA+QH FR+RF PVR+ ++SRF KE+ IL +AEG +DI+IGTH+LLQ Sbjct: 499 PTTLLAEQHGKTFRERFQGLPVRVAVLSRFTPPKEEEAILKGLAEGTVDIVIGTHRLLQE 558 Query: 717 DVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 776 DV+F+DLGLLIVDEEHRFGV KERI+ ++A VD L L+ATPIPRTL A+ G++DLS I Sbjct: 559 DVRFRDLGLLIVDEEHRFGVAQKERIRELKAEVDTLYLSATPIPRTLYSALVGLKDLSSI 618 Query: 777 ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 TPP R +KTF+ +D ++VREAIL E+ RGG+V+Y+++ V +I+ L LVPEA Sbjct: 619 QTPPPGRKPIKTFLAPFDPLLVREAILFELERGGKVFYVHDRVASIEARRRFLENLVPEA 678 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 RI + HGQM E +E M F ++VL+ TTIIE G+D+P ANTI+IERAD GLA L Sbjct: 679 RIGVVHGQMPESLIEETMLLFAEGAYDVLLATTIIEAGLDVPEANTILIERADRLGLATL 738 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 +QLRGRVGR +AYA+L HP +T A+KRL AIA L DLG+G LA D+EIRG G Sbjct: 739 YQLRGRVGRREEEAYAYLF--HPPRLTEAAEKRLAAIADLSDLGSGHLLAERDMEIRGVG 796 Query: 957 ELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 LLG EQ G + + +Y ELLE A+ LK + +T ++L + + LP ++ Sbjct: 797 NLLGPEQHGHIRALSLEVYTELLEEAIRKLKGEAKEERRHVT-----LDLALSARLPAEY 851 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 + + R +Y R A AK+ EL + EL +R+G LP+ A + +ARLR A++ G+ Sbjct: 852 VGSLEARSRYYSRFAEAKSLAELSRLVRELKERYGPLPEEAENFVALARLRLVAERKGV 910 >UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RAG4_9FIRM Length = 1143 Score = 547 bits (1410), Expect = e-154, Method: Compositional matrix adjust. Identities = 282/677 (41%), Positives = 418/677 (61%), Gaps = 9/677 (1%) Query: 390 ESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDL 449 ESE +R + ELL ++ QR+ D + G ++ GF + + +L Sbjct: 396 ESEIKR--VRELLDEKNVSYQRVEETDTLKN-GISILHHRLIEGFTCISEQIHVYTGKEL 452 Query: 450 LGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL 509 + + R ++ ++ + EL++G VVH +HG+G+Y G+ E GI ++L Sbjct: 453 FQSKHSISRYSNK--FKEAEVLHDYQELNVGDYVVHHQHGIGKYLGIVNKEIDGIHKDFL 510 Query: 510 MLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELL 569 + Y D L VP+ LI ++ L+KLG W + ++K +EK+ +A L+ Sbjct: 511 HIAYKGDDVLLVPLEQFQLIRKFVSKEGAVPKLNKLGSGEWEKTKRKVSEKIAQLAQRLV 570 Query: 570 DIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGD 629 +YA R GFAF D E + F F +E T DQA+A+ + DM MDRL+CGD Sbjct: 571 HLYASREEHIGFAFSKDSELQKQFEQDFDYELTHDQARAVKEIKQDMESSKPMDRLLCGD 630 Query: 630 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSA 689 VGFGKTEVA RAAF AV ++KQVA L PTT+L+ QHY F RF N+PVRIE+I+RF Sbjct: 631 VGFGKTEVAARAAFKAVVDNKQVAFLCPTTILSLQHYKTFTRRFENYPVRIEVINRFIPM 690 Query: 690 KEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANV 749 +Q QI+ ++ G IDILIGTH+LL D++F+DLGLL++DEE RFGV HKE+IK + V Sbjct: 691 AKQKQIMEDIKAGSIDILIGTHRLLSKDIQFQDLGLLVIDEEQRFGVEHKEKIKEFKNTV 750 Query: 750 DILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRG 809 D+L+L+ATPIPRTL M++ G+R LS + TPP R+ V+T+V E + +++E I RE+ R Sbjct: 751 DVLSLSATPIPRTLQMSLIGIRSLSQLNTPPQNRMPVQTYVIEKNFAMIKEIIQRELARN 810 Query: 810 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 869 GQV+YLYN+V+ I A +L E +P+ I + HGQM ++E VM F + VLVCTT Sbjct: 811 GQVFYLYNNVKEIYNVARKLREALPDVEIGVAHGQMSREDIEDVMLQFTENHYQVLVCTT 870 Query: 870 IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKR 929 IIETGIDIP ANTI+I+ ADHFGLAQL+Q++GRVGRS AYA+L+ + ++ A KR Sbjct: 871 IIETGIDIPNANTILIDEADHFGLAQLYQIKGRVGRSDRLAYAYLMYSPQRQLSEIAMKR 930 Query: 930 LEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAG 989 L++I LG+G+ +A DL IRGAG++LG +Q+G ++T+G +Y+E+L +A+ K Sbjct: 931 LKSIKEFTQLGSGYKIAMRDLTIRGAGDMLGPQQAGFIDTVGIDMYIEMLNDAIMEEKGI 990 Query: 990 REPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDR 1049 ++ ++L +V+ +PS F + +++ Y+R+ + T+ EL + E+ D Sbjct: 991 KKEVKKELAKANVKVDAYIPS----RFANEDYEKITLYQRMDAITTKKELLAMMDEIKDN 1046 Query: 1050 FGLLPDPARTLLDIARL 1066 +G LP + L + RL Sbjct: 1047 YGRLPKAVQLLFEKKRL 1063 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 50/198 (25%), Positives = 107/198 (54%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 LG L+ + A +VA ++ ++++ + A RL++ + + V+ E+L Sbjct: 24 LGNLSLSEEALIVASAFQKQPQTMLIVKNNTYTAQRLYERLYSLLGEKVLFFGVEESLRV 83 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 ++ + + ++++ L +L + ++++ + + H + +K + + Sbjct: 84 EAIAASPETKANQMEVLSKLFDNKPYIVVMNAAASIHYLPAPEVFQQHCISIKTNEETNY 143 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 + L+T L AGY HV +V + YA RG ++D++ M E P R++FFD+EIDS+R FD+ Sbjct: 144 EQLKTLLFEAGYTHVSRVDQPLCYAARGGIIDVYSMNYEYPLRIEFFDNEIDSIRFFDIS 203 Query: 199 SQRTLEEVEAINLLPAHE 216 +QRT+E ++ +++PA + Sbjct: 204 TQRTIEVIQEASIIPASD 221 >UniRef50_C9LLX5 Transcription-repair coupling factor n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLX5_9FIRM Length = 1135 Score = 544 bits (1402), Expect = e-153, Method: Compositional matrix adjust. Identities = 288/722 (39%), Positives = 444/722 (61%), Gaps = 10/722 (1%) Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 L G GF +A I D+ G++ ARR + + IR ++L G VV Sbjct: 409 LYNGVLSGGFELPDAKMAFITAGDIFGKQKARRYKAGGKGKQ----IRYFSDLEPGDYVV 464 Query: 485 HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544 HG+G+Y G+ T+E G+ +Y+ + YA KLY+P+ + + +Y G + LH+ Sbjct: 465 QRVHGIGKYIGVKTIELEGVHRDYITIQYAGADKLYLPMEQIASLEKYIGPEGQTPALHR 524 Query: 545 LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604 +GG W + R+KA + + ++A +LL +YA R EG +F D + + F D+FPF T D Sbjct: 525 MGGVQWDKVRRKAKKSIEELAEKLLAVYADREITEGISFLPDTAEQREFEDTFPFVETDD 584 Query: 605 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 664 Q +AI AV M +P MD L+CGDVGFGKTEVAMRA F V + Q VL PTT+L+ Q Sbjct: 585 QLEAIQAVKRGMERPQPMDMLICGDVGFGKTEVAMRAVFKCVMSGFQAMVLCPTTVLSSQ 644 Query: 665 HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 724 HY F+ R ++ + I +++RF + +E+ +IL+++A G++D++IGTH +L ++ + LG Sbjct: 645 HYKTFKGRMDSFGINIALLNRFTTMREKKEILSKLASGEMDVVIGTHAVLSKKIECRHLG 704 Query: 725 LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784 LL+VDEE RFGV KE+ K+ +DILTL+ATPIPRTL+M+++G+RD+ + PPA R Sbjct: 705 LLVVDEEQRFGVMQKEKWKSWSKKLDILTLSATPIPRTLHMSLTGVRDMVAMTQPPANRH 764 Query: 785 AVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP-EARIAIGHG 843 A++T+V EYD +V++AIL E RGGQ Y++YN +E+I+ L +++P + IA+ +G Sbjct: 765 AIQTYVTEYDDTIVKDAILHEKARGGQTYFIYNRIESIRAMEAHLRDILPSDVTIAVAYG 824 Query: 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903 QM R LE++M DF ++++VL+CTTIIE G+D P ANT+++ AD GL+Q++Q+RGRV Sbjct: 825 QMDGRTLEKIMVDFFEKKYDVLLCTTIIENGVDQPNANTMLVYDADKLGLSQIYQMRGRV 884 Query: 904 GRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQ 963 GRS A AW K ++ A+KRL I +LG+GF +A DLEIRGAG LLG EQ Sbjct: 885 GRSEKIARAWFFYRQGKVLSEAAEKRLNTIREFTELGSGFKIAMRDLEIRGAGNLLGAEQ 944 Query: 964 SGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTR 1023 G++ +GF+ Y +LE+ V L+A RE T VELR + L +D+I + + Sbjct: 945 HGNIAGVGFATYCNMLEDTVSRLRAERENKPVPKKMPDTTVELRQDAYLDEDYISNEGQK 1004 Query: 1024 LSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 + Y+R+A A +E EL ++ E+IDRFG PA L ++R+R QA++LGI + + Sbjct: 1005 MEIYRRLAVAASEEELTDLIDEVIDRFGSPSRPAERLFLVSRIRVQARRLGIGSILDEGQ 1064 Query: 1084 GGVIEFAEKNHVNPAWLIGLL---QKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1140 +I +A++ ++ W + L H+ P R++ I+ + +W+ F+ Sbjct: 1065 TLLIVWADEEPMH-RWNMNRLPHSYMSKLHFLPGSPARVR-IKKTDIQGNTAKWMSDFIE 1122 Query: 1141 EL 1142 E+ Sbjct: 1123 EI 1124 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 99/192 (51%), Gaps = 1/192 (0%) Query: 24 GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF-TDQMVMNLADWETLPYDSFS 82 G + L+ +A + P+++I P ++ R ++ F TD + E + Sbjct: 68 GDSQKALLTAMAAKEDSPLIIIVPSQKDVFRWEMDLRFFATDLHLYYFPLVEETGFKVTF 127 Query: 83 PHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALR 142 + + R+ L L +R +I V Q++ S + + + + G+ + R+ L Sbjct: 128 SGTERLRDRMRGLASLLDGRRSAVIATVVEAAQKIISPSGILENLMTIHMGEVIEREILV 187 Query: 143 TQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRT 202 +L GY VDQV G ++ RG ++D+F + P+R++FFDDE+D +RVF+ D+QR+ Sbjct: 188 GKLVKLGYERVDQVERCGHFSVRGDIVDIFAINESHPFRVEFFDDEVDGIRVFNEDTQRS 247 Query: 203 LEEVEAINLLPA 214 ++ + I++LPA Sbjct: 248 IDIRDDISILPA 259 >UniRef50_C7H0W1 Transcription-repair coupling factor n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0W1_9FIRM Length = 1092 Score = 544 bits (1402), Expect = e-153, Method: Compositional matrix adjust. Identities = 278/666 (41%), Positives = 421/666 (63%), Gaps = 6/666 (0%) Query: 433 GFVDTVRNLALICESDLLGERVARRRQDSRRTINPD-TLIRNLAELHIGQPVVHLEHGVG 491 GF+D + L+ E D+ G RV R ++++ +I + +N+ E G +VH G+G Sbjct: 376 GFIDNDEHSCLLTEKDIFGVRVYRAKRNTNESIGERLSGYQNIEE---GDYLVHKTKGIG 432 Query: 492 RYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWS 551 RY G+ T++ G + +Y+ L YA D KLYVPV + +++S+Y+G ++ L KL + WS Sbjct: 433 RYTGIKTMKLSGRSKDYICLVYAQDDKLYVPVENANVLSKYSGVSDAAPKLSKLFTNEWS 492 Query: 552 RARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINA 611 ++KA V ++A ++L+ A+R AK+G+AF D E+ + F F + T DQ +AI+ Sbjct: 493 VTKKKAWLSVLELAKKILEDEAKRKAKKGYAFLPDDEESKKFDADFSYIPTDDQLRAIDE 552 Query: 612 VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRD 671 V +DM MDRL+CGDVG+GKTEVA RA + V KQVA L PTT+L QHY Sbjct: 553 VKADMESHSPMDRLLCGDVGYGKTEVAARAMYKCVAAGKQVAFLAPTTILVNQHYKTLVK 612 Query: 672 RFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEE 731 RF I +SRFR+ +Q +I+ + GK+DILIGTH++L D+ F+DLGLLI+DEE Sbjct: 613 RFEKTAAIIGELSRFRTDVQQKKIIEDAKAGKVDILIGTHRMLSQDIGFQDLGLLIIDEE 672 Query: 732 HRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVR 791 RFGV KE+I+ +R NVD+LTL+ATPIPRT++MA+SG RDLS+I PP R+ V TFV Sbjct: 673 QRFGVVQKEKIRRLRQNVDVLTLSATPIPRTMHMAISGARDLSLITHPPLERMPVNTFVY 732 Query: 792 EYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELE 851 ++REAI RE+ R GQVY + + ++Q E++ LV R+ +GQM E+ +E Sbjct: 733 IKSDEIMREAIEREVARKGQVYVVCRRISHMQDVKEKIERLVKGIRVDTVNGQMNEKYIE 792 Query: 852 RVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAY 911 ++ F +VLVCT IIETGIDI ANTIII AD G+A+L+QLRGRVGR + ++ Sbjct: 793 DTLSSFIAGEIDVLVCTKIIETGIDIKNANTIIILDADMMGIAELYQLRGRVGRGNRSSF 852 Query: 912 AWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIG 971 A+LL K ++ + + RL AI G+ LA D++IRGAG+++G++Q G M +IG Sbjct: 853 AYLLHNDYKKLSDEQKSRLTAIKEFAKFGSSLTLAMKDMQIRGAGDIIGKQQHGHMISIG 912 Query: 972 FSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIA 1031 + +Y++L+E+AV AL GRE +ED + E+ L + + +P +I D ++L Y++IA Sbjct: 913 YEMYIKLIEDAVKALNEGREIEIED--EVECEMSLDIEAYIPKSYIHDTQSKLMVYRKIA 970 Query: 1032 SAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAE 1091 +T E +++K + D FG P+ R L++++ ++ +A + GI K+ NE ++E+ Sbjct: 971 GIQTNEEFQDVKEYIEDMFGRSPENVRKLMELSFVKNKAARCGISKVRSNEFDIIVEYIS 1030 Query: 1092 KNHVNP 1097 + P Sbjct: 1031 AKSLQP 1036 Score = 85.1 bits (209), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 6/193 (3%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSF 81 + +A A ++E + H V L+A ++ ++L + FT + + L+ Y+S Sbjct: 12 VEASASARYISENIKNH-DRVFLVAATAEDCMQLAAALEYFTKKETIVLSKDLFFGYESR 70 Query: 82 SPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDAL 141 Q+I S L + ++ + +R ++IV + +V F AL + GQ +SR+ + Sbjct: 71 DRQQEI--SFLRAVKRIASQERCMVIVTPFMINTKVSSAVF--KSALTLTMGQDISREDV 126 Query: 142 RTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR 201 QL GY E GEYA RG ++D+ G E R++FF D ID +R FD+ +QR Sbjct: 127 EVQLSELGYERRQNAYEDGEYAVRGGIIDVMQDG-ENGVRIEFFGDCIDGIRKFDIKTQR 185 Query: 202 TLEEVEAINLLPA 214 + E +E+I++ P Sbjct: 186 SSEALESIDIEPV 198 >UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cyanobacteria RepID=Q3AK28_SYNSC Length = 1192 Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust. Identities = 292/677 (43%), Positives = 430/677 (63%), Gaps = 24/677 (3%) Query: 441 LALICESDLLGER-------VARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRY 493 +AL+ + + G++ V RRR+ + RT++P+ ++ G VVH HG+GR+ Sbjct: 463 IALVTDREFFGQQSLSSSGYVRRRRKAASRTVDPN-------KMRPGDFVVHRNHGIGRF 515 Query: 494 AGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRA 553 M L G +YL++ YA D L V L + RY +E L+++GG AW++A Sbjct: 516 KAMEKLAMSGDIRDYLVVQYA-DGILRVAADQLGSLGRYRATSETPPQLNRMGGTAWNKA 574 Query: 554 RQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVL 613 +++A + VR VA +L+ +YA+R GFAF D +SFP++ TPDQ +A V Sbjct: 575 KERAKKAVRKVALDLVKLYAERQQAAGFAFPTDGPWQVEMEESFPYDPTPDQLKATADVK 634 Query: 614 SDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRF 673 DM + MDRLVCGDVGFGKTEVA+RA F A+ KQVA+L PTT+LAQQH+ +RF Sbjct: 635 RDMERQEPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAMLAPTTVLAQQHWRTLSERF 694 Query: 674 ANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHR 733 A +P+++ +++RFR+A E+ IL + +G ID ++GTH+LL F++LGLL+VDEE R Sbjct: 695 APYPIKVALLNRFRTASERKSILDGLKQGTIDAVVGTHQLLSKGASFQELGLLVVDEEQR 754 Query: 734 FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREY 793 FGV KE+IK +R +VD+LTL+ATPIPRTL M++SG+R++S+I TPP R +KT + Sbjct: 755 FGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVREMSLITTPPPLRRPIKTHLASL 814 Query: 794 DSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERV 853 D +R AI +E+ RGGQV+Y+ VE I++ A L E++P ++ + HGQM E ELE Sbjct: 815 DPEAMRSAIRQELDRGGQVFYVVPRVEGIEEVAAGLREMLPGLKLLVAHGQMAEGELENA 874 Query: 854 MNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 913 M F+ +V++CTTI+E+G+DIP NTI+IE A FGLAQL+QLRGRVGRS QA+AW Sbjct: 875 MVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGLAQLYQLRGRVGRSGIQAHAW 934 Query: 914 LLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFS 973 L P +++ A++RL AI LG+G+ LA D+EIRG G LLG +QSG METIGF Sbjct: 935 LFYPGNASLSDTARQRLRAIQEFAQLGSGYQLAMRDMEIRGVGNLLGVQQSGQMETIGFD 994 Query: 974 LYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASA 1033 LYME+L+ ++ ++ PS+ED T+V+L + + +P D+I D + +++ Y+ A Sbjct: 995 LYMEMLQESLAEIQGQDIPSVED-----TQVDLPVTAFVPADWITDPDEKIAAYRAAADC 1049 Query: 1034 KTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKN 1093 T L E+ DR+G LP +LL + L+ A++ G +++ + V+E + Sbjct: 1050 LTAEALVELAAGWADRYGALPAAVVSLLQLMELKLLAKRCGFSRIKPEKPNIVLETPME- 1108 Query: 1094 HVNPAWLIGLLQKQPQH 1110 PA+ + L Q PQH Sbjct: 1109 --EPAFRL-LRQGLPQH 1122 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 80/275 (29%), Positives = 124/275 (45%), Gaps = 15/275 (5%) Query: 16 QRLLGELTGAACATLVAE-IAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWE 74 QRLL G LVA +A+R P++++ P ++ A R + E Sbjct: 27 QRLLMRGAGRCSRALVASALAQRRGAPLLVVVPTLEEAGRWTALLELMGWSQAGLYPTSE 86 Query: 75 TLPYDSFSPHQDIISSRLSTLYQL---PTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 PY+ F P +I +L L L P ++ L + P L ++ Sbjct: 87 GSPYEPFDPTSEITWGQLQVLSDLLGDPDALSWAIVATERCLQPHLPPPDVLKTKTRTLR 146 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 KG ++ +AL L GY V+ + + G ++ RG ++D+FP+ SELP RL+FF +E+D Sbjct: 147 KGDQVDLEALGETLAQLGYERVNTIEQEGSWSRRGDIVDIFPVSSELPVRLEFFGEELDK 206 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP---EHIYQQV 248 LR FD SQR+L+ V+A+ L P P L Q R+T +P +Q+ Sbjct: 207 LREFDPASQRSLDPVDALRLTPTGFGP-------LIADQLRETMPDGLEPLLGAEGTEQL 259 Query: 249 SKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV 283 G P G+ L + +P L Y P T +V Sbjct: 260 LNGGTPEGMRRLMGLAWGQP-ASLLDYLPDTTTVV 293 >UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Actinomycetales RepID=B2GL97_KOCRD Length = 1254 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 319/730 (43%), Positives = 461/730 (63%), Gaps = 34/730 (4%) Query: 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY-LMIGAAEHGFVDTVRN 440 D +V + G + L ELL + R +D+A G L A GFV + Sbjct: 460 DWRIVLVTDGPGPLQRLSELLHGADVPAARYDSVDDAPQPGLVELTTARAGRGFVIEGQR 519 Query: 441 LALICESDLLG-----ERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAG 495 +AL+ E+D+LG + A R+ RR N + LA L G VVH +HG+G++ Sbjct: 520 IALLTEADVLGRSSTYDNRAERKLPQRRKRNQ---VDPLA-LQKGDYVVHEQHGIGQFIE 575 Query: 496 MTTLE-AGGITG--------EYLMLTYANDAK------LYVPVSSLHLISRYAGGAEENA 540 + AG +T EYL+L YA + L+VP L +S Y GG E Sbjct: 576 LVQRPIAGAMTAPGQPKPVREYLVLEYAASKRNGPRDRLFVPTDQLDQVSTYVGG--EAP 633 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 L K+GG W++ ++ A + V+++A EL+ +Y+ R A +G +F D + +FP+ Sbjct: 634 SLSKMGGADWNKTKRSAKKAVKEIANELIRLYSARMASKGHSFGPDTPWQRELEQAFPYI 693 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 TPDQ I+ V +DM +P+ MDRL+ GDVG+GKTEVA+RAAF AV + KQVAVLVPTTL Sbjct: 694 ETPDQLTTIDEVKADMERPIPMDRLISGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTL 753 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LAQQH + F +RF+ +PVR+ +SRF++AKE + + G +D++IGTH+LL +++F Sbjct: 754 LAQQHSETFAERFSGFPVRLATLSRFQTAKESKATMEGLRSGAVDVVIGTHRLLSKEMQF 813 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 K+LGL+I+DEE RFGV HKE++KAMR +VD+L ++ATPIPRTL M+M+G+R+ S +ATPP Sbjct: 814 KNLGLVIIDEEQRFGVEHKEKLKAMRTDVDVLAMSATPIPRTLEMSMTGIRETSTLATPP 873 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 R V T+V Y + V AI RE++R GQV++++N V I+ A+ LAELVPEARIA+ Sbjct: 874 EERHPVLTYVGPYTNKQVSAAIRRELMREGQVFFIHNRVSTIEAQAKELAELVPEARIAV 933 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 HGQM E LE+++ DF ++F+VLVCTTI+ETG+DI ANT+I++ AD +GL+QLHQLR Sbjct: 934 AHGQMTESRLEQIIVDFWEKKFDVLVCTTIVETGLDIANANTLIVDHADRYGLSQLHQLR 993 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGR +AYA+ L P K ++ A +RL+A+A+ +LG+G LA DLEIRGAG LLG Sbjct: 994 GRVGRGRERAYAYFLYPAEKPLSETALERLKAVAAHNELGSGMQLAMKDLEIRGAGNLLG 1053 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 EQSG + +GF +Y+ L+ AV + +D + ++EL + + LP D++P Sbjct: 1054 GEQSGHIAGVGFDMYLRLVGEAVAEYRGD-----QDTGPAEMKIELPVNAHLPHDYVPGE 1108 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 RL Y+ IA+A TE + E EL DR+G LP P LL++ARLR +A+ G+ + Sbjct: 1109 RLRLEAYRTIANAATEEAVAEAGEELTDRYGPLPTPVENLLEVARLRIRARAAGLTDV-- 1166 Query: 1081 NEKGGVIEFA 1090 +G ++ F+ Sbjct: 1167 ATQGTMVRFS 1176 Score = 101 bits (252), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 75/261 (28%), Positives = 121/261 (46%), Gaps = 21/261 (8%) Query: 35 AERHAGPVVLIAPDMQNALRLHDEISQF-TDQMVMNLADWETLPYDSFSPHQDIISSRLS 93 AE HA ++ + + A L + + + + N WETLP++ SP D + RLS Sbjct: 71 AEAHAPVLLAVTATGREAEELQAALGSYLPSEQIANFPSWETLPHERLSPRSDTVGQRLS 130 Query: 94 TLYQL----PTMQR-GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSA 148 L +L P+ Q V++ PV +++Q V + ++ GQ L +L A Sbjct: 131 VLRRLERTDPSEQPLRVVVAPVRSVLQPVV-AGLGQMEPVTLRTGQDYDFQQLVVELAGA 189 Query: 149 GYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEA 208 Y VD V GE+A RG ++D+FP + P R +FF DE+D +R F V QRTL E Sbjct: 190 AYSRVDMVTRRGEFAVRGGIIDVFPPTEDHPVRAEFFGDELDEMRWFAVADQRTLTTAEH 249 Query: 209 INLL---PAHEF---PTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQP 262 +++ P E P+ ++ + Q E + ++++ G G+E P Sbjct: 250 PSVIVAPPCRELLITPSVQSRAAKLKEQLPGGRE-------MLERIAGGQYVEGMESLAP 302 Query: 263 LFFSEPLPPLFSYFPANTLLV 283 L E L + S PA ++ V Sbjct: 303 LLADEML-QVMSLLPAGSMTV 322 >UniRef50_B1H078 Transcription-repair coupling factor Mfd n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H078_UNCTG Length = 1048 Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust. Identities = 274/674 (40%), Positives = 421/674 (62%), Gaps = 8/674 (1%) Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 + G+ GF + N + C S E + +++ S I + + + E+ G VV Sbjct: 332 FLYGSLSRGFY--LENAKVTCISS--REMLYKKKPVSFPKIRGGSRLEGIWEILAGDYVV 387 Query: 485 HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544 H ++G+GRY G+ T+ EYL + Y N KLY+P + I +Y G L+ Sbjct: 388 HEKYGIGRYIGLKTISRENSISEYLCIEYKNGDKLYIPPEQIKTIKKYIGVEGVKPKLYS 447 Query: 545 LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604 + AW R + +A E A ELL +Y QR+ + F + ++FP++ TP Sbjct: 448 MDTLAWERVKSRAREAAAKFAEELLKLYVQRSLIKRKPFGPGTAWEKELENTFPYDETPG 507 Query: 605 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 664 Q +AI + +D +P M+RLVCGDVG+GKTEV +RAAF AV Q A+LVPTT+LAQQ Sbjct: 508 QLKAIEDIKNDFLKPYPMERLVCGDVGYGKTEVVVRAAFKAVHESMQTAILVPTTVLAQQ 567 Query: 665 HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 724 HY+ F DR + +P+++ ++SRF++ +Q +I ++ G IDI+IGTH+LLQ DVKFK+LG Sbjct: 568 HYNTFCDRLSPFPIKVAVLSRFQTKAKQKEITQDLENGLIDIIIGTHRLLQKDVKFKNLG 627 Query: 725 LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784 LL++DEEHRFGV+ KE+IK+M+ N+DIL L+ATPIPRTL+ ++SG RDLS+I TPP RL Sbjct: 628 LLVIDEEHRFGVKQKEKIKSMKKNIDILMLSATPIPRTLSSSLSGFRDLSVIETPPFGRL 687 Query: 785 AVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 844 ++T + YD +++ I E+ R GQV+Y+YN +E I A + ELVP ++ I +GQ Sbjct: 688 PIETSISLYDENLIKNIIEAELSRNGQVFYVYNKIETILTKAASIRELVPGIKLGIIYGQ 747 Query: 845 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 M+ +++E +M F + +VL+ TTIIE+G+DIP+ NT+IIE ++FGL+QL+QLRGR+G Sbjct: 748 MKAKDIEEIMWKFINMELDVLLATTIIESGLDIPSVNTMIIEEVENFGLSQLYQLRGRIG 807 Query: 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 964 R +AY +L K ++ +A KRLEAI +LG+GF LA DLEIRGAG +L Q Sbjct: 808 RDRKKAYCYLFYKD-KTLSDEAVKRLEAIREFGELGSGFRLALKDLEIRGAGGILSSSQH 866 Query: 965 GSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRL 1024 G + IG+ ++ +LLE +K ++E + T ++L++ +L+P +I + R+ Sbjct: 867 GFVRDIGYDMFAKLLEEEGKKVKG---DAVESQEKKNTVIDLQINALIPPTYIEGEDIRI 923 Query: 1025 SFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKG 1084 FY+++++A+ +E IK EL+DRFG +P+ + L +I LR A+KL I ++ + Sbjct: 924 LFYRKLSNAQNIKAIENIKNELLDRFGKIPNETQMLFEITNLRLTAEKLDIERIAEDNNY 983 Query: 1085 GVIEFAEKNHVNPA 1098 + F+ K + A Sbjct: 984 IYLYFSRKADFSKA 997 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/83 (30%), Positives = 46/83 (55%) Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 + Q+ L T L S GY V + ++A RG ++D++ + E+P R+ F + +++ Sbjct: 137 QNQKCDFSNLVTSLSSFGYTRTSFVEDKLQFAVRGEIIDVWTVAGEMPVRILFKYNTVEA 196 Query: 192 LRVFDVDSQRTLEEVEAINLLPA 214 +RVFD +SQ + + I +LP Sbjct: 197 IRVFDPESQLSNVFISEIKILPV 219 >UniRef50_A1BEU9 Transcription-repair coupling factor n=12 Tax=Chlorobiaceae RepID=A1BEU9_CHLPD Length = 1127 Score = 539 bits (1389), Expect = e-151, Method: Compositional matrix adjust. Identities = 286/654 (43%), Positives = 413/654 (63%), Gaps = 11/654 (1%) Query: 433 GFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGR 492 GF T +L L ESD+ G + + +R I +L ++L +L +G VVH +G+GR Sbjct: 389 GF--TFGDLDLYTESDIFG-KFHTPKGHHKRKIKGISL-KDLQKLKVGDYVVHENYGIGR 444 Query: 493 YAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSR 552 + + T+ G E +++ Y +L+V V +++L+S+Y L KLG W Sbjct: 445 FKTLETISVGNSEQECVLVEYEGGDQLFVNVQNINLLSKYTASEGSLPSLSKLGSSKWGA 504 Query: 553 ARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAV 612 + K K+RD+A L+ IYA+R EGFA D + F SF F+ TPDQ +AI V Sbjct: 505 KKDKVRRKLRDIAINLIKIYAKRKMTEGFACCADTIFTREFEASFVFDETPDQLKAIEEV 564 Query: 613 LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDR 672 DM MDRL+CGD GFGKTE+AMRAAF AV++ KQVA+L PTT+LA QH ++F R Sbjct: 565 KKDMQASHPMDRLICGDAGFGKTEIAMRAAFKAVESKKQVAILTPTTILAHQHGESFTRR 624 Query: 673 FANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH 732 F N+P+ I ++SRF + K+Q +I+ ++ G+IDI+IGTH+L+ DV FKDLGLL++DEE Sbjct: 625 FENFPISIAVLSRFVARKDQEKIIEKIKAGQIDIVIGTHRLVSKDVLFKDLGLLVIDEEQ 684 Query: 733 RFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE 792 FGV KE+++ VD LT++ATPIPRTL +M G RDLSI++TPP R V+T + Sbjct: 685 HFGVEVKEKLRDSFPGVDSLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPVETILTG 744 Query: 793 YDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 852 YD +++ AI E+ R GQV++L+N + +++ + L +LVP ARI I HGQM +ELE+ Sbjct: 745 YDPTIIQSAIRHELQRDGQVFFLHNRISGLEEVQQTLRDLVPYARIVIAHGQMPSKELEK 804 Query: 853 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 VM DF + +VL+ T+II +G+DI ANTIII RAD FGL+ L+QLRGRVGRS +A Sbjct: 805 VMMDFMQKEIDVLISTSIISSGLDISNANTIIINRADMFGLSDLYQLRGRVGRSERKASC 864 Query: 913 WLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF 972 +++TP + +A +RL I S +LG+GF +A DL+IRGAG LLG EQSG + +GF Sbjct: 865 YMITPPLNTLKKEAVQRLAVIESFTELGSGFTIALRDLDIRGAGNLLGAEQSGFIHELGF 924 Query: 973 SLYMELLENAVDALKA-------GREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLS 1025 LY ++LE V LK+ E S L S+ ++ +L+PD +I ++ R + Sbjct: 925 DLYQKMLEETVAELKSTEFYQLFSNEESPAVLPSKPCDLAFFFDALIPDFYISAIHERFA 984 Query: 1026 FYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLE 1079 FY++I+ A +E L+ E+ DRFG LP+ LL +A+L+ A GI K++ Sbjct: 985 FYEKISRATSEEVLDSFHSEMKDRFGELPEEVANLLLLAKLKIAASAAGIDKID 1038 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 31/97 (31%), Positives = 57/97 (58%), Gaps = 7/97 (7%) Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 + L + L G+ + V + GE++ RG+++D+F G+++P R++FF + + SLR FD++ Sbjct: 179 EKLLSFLAENGFEPREFVEDEGEFSVRGSIVDVFSFGAKVPLRIEFFGNTVSSLRTFDIN 238 Query: 199 ---SQRTLEEVEAI-NLLPAHEFPTDKAAIELFRSQW 231 SQ+TL E N PA + KA+ E+ + + Sbjct: 239 SQLSQKTLTAAELTGNFNPAE---SSKASAEIVLADY 272 >UniRef50_C9MMN8 Transcription-repair coupling factor n=1 Tax=Prevotella veroralis F0319 RepID=C9MMN8_9BACT Length = 1187 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 277/662 (41%), Positives = 414/662 (62%), Gaps = 18/662 (2%) Query: 433 GFVDTVRNLALICESDLLGERVARR--RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 GFVD + + + +R + + D R ++ L E+ G +VH++ G+ Sbjct: 447 GFVDNTLKVCFFTDHQIF-DRFHKYNLKSDKARQGKMALTMKELQEMEPGDFLVHVDFGI 505 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPL-HKLGGDA 549 G++AG+ + G E + L Y ++ + V + SL+ IS+Y G PL LG A Sbjct: 506 GKFAGLVRVPTGDSYQEVIRLVYQHNDIVDVSIHSLYKISKYRRGNSGEPPLLSVLGSGA 565 Query: 550 WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAI 609 W R +++A ++++D+A +L+ +YA+R ++GFAF D SF +E TPDQ +A Sbjct: 566 WDRLKERAKKRIKDLARDLIKLYAKRRREKGFAFSPDSFMQHELEASFLYEDTPDQLKAT 625 Query: 610 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 669 + DM MDRLVCGDVGFGKTEVA+RAAF A ++KQVAVLVPTT+LA QHY F Sbjct: 626 QELKQDMESARPMDRLVCGDVGFGKTEVAIRAAFKAAVDNKQVAVLVPTTVLAFQHYQTF 685 Query: 670 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 729 + R + PVR++ +SR RSAK+ Q++ ++AEGKI+IL+GTHKL+ VK+ DLGLLI+D Sbjct: 686 KKRLKDMPVRVDYLSRARSAKQTKQVIEDLAEGKINILVGTHKLIGKTVKWHDLGLLIID 745 Query: 730 EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF 789 EE +FGV KE+++ ++ NVD LT++ATPIPRTL ++ G RD+SI+ TPP R ++T Sbjct: 746 EEQKFGVTTKEKLRQLKTNVDTLTMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTQ 805 Query: 790 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERE 849 + + V+ +AI E+ R GQVY++ N V N+ + A + + VP+ R+AIGHGQM+ E Sbjct: 806 IASFSHEVIADAINFEMSRNGQVYFVNNRVGNLPEIANLIKKYVPDCRVAIGHGQMKPEE 865 Query: 850 LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 909 LE+++ F + ++VL+ TTI+E GIDI ANTIII A FGL+ LHQ+RGRVGRS+ + Sbjct: 866 LEKIIMGFMNYDYDVLLSTTIVENGIDISNANTIIINEAHRFGLSDLHQMRGRVGRSNKK 925 Query: 910 AYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMET 969 A+ +LL P A+ +DA+ RL A+ + DLG+GF LA DL+IRGAG LLG EQSG ME Sbjct: 926 AFCYLLAPPLAALNSDARHRLLALETFSDLGSGFNLAMQDLDIRGAGNLLGSEQSGFMED 985 Query: 970 IGFSLYMELLENAVDALK-------------AGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 +G+ Y ++L AV LK G++ + +D VE + PD++ Sbjct: 986 LGYETYQKILSQAVTELKNDEFQDLYAEEMNEGKQITGDDFID-DCAVESDLEMYFPDNY 1044 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076 +P + R+ Y+ + + + + +LE + LIDRFG +P L+ + LR+ ++LG Sbjct: 1045 VPGSSERMLLYRELDNIEKDEDLEAYRQRLIDRFGPVPRQGEELMQVVALRRIGKRLGCE 1104 Query: 1077 KL 1078 K+ Sbjct: 1105 KI 1106 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 17/213 (7%) Query: 18 LLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT--DQMVMNLADWET 75 L L +A A IAER +V + D + A ++++ T + N A+ Sbjct: 32 FLQGLVASAAPMFFAAIAERWKKTIVFVLSDNEEAGYFYNDLKTITMPEDGTSNTAEVLF 91 Query: 76 LP--------YDSFSPHQDIISSRLSTLYQLPTMQRGV-------LIVPVNTLMQRVCPH 120 P Y +I+ + + T ++G ++ + L ++V Sbjct: 92 FPSSYRRAVKYGQRDAGNEILRTEVLTRLSALATEKGTTNRLPLYIVTDPSALSEQVVSK 151 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 L L + Q + + L S G+ D V E G++A RG++LD++ ELPY Sbjct: 152 RQLDERRLSLSVNQHIDIVEVEKTLRSFGFTETDYVYEPGQFAVRGSILDVYSYSGELPY 211 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLP 213 R+DFF D+I+++R F+V+SQ + +++E I ++P Sbjct: 212 RIDFFGDDIETIRTFEVESQLSSKKLEHIEVVP 244 >UniRef50_A4E9V3 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E9V3_9ACTN Length = 1210 Score = 535 bits (1377), Expect = e-150, Method: Compositional matrix adjust. Identities = 288/672 (42%), Positives = 422/672 (62%), Gaps = 14/672 (2%) Query: 421 RGRYLMIGAA-EHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHI 479 RGR + AA G V NLA+ +DL R+ R SRR ++ + + Sbjct: 479 RGRVTFVDAALPQGVVVPDANLAVFSIADL-NARMDANRARSRRKVD---ITQITFPFKP 534 Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G VVH HG+ ++ + E GG +Y +L YA+ KLYVP+ + I+RY G + Sbjct: 535 GDYVVHATHGIALFSEIARQEVGGKERDYFLLEYADGDKLYVPLEQVDRITRYVGPDGDK 594 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599 L +L W+RA KA + + +A +L+D+Y +R++ G A D + +SFP+ Sbjct: 595 PRLTRLNTADWTRATNKARKNAKKLAFDLVDLYTRRSSITGIACPPDTPEQIEMEESFPY 654 Query: 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 659 + T DQ +AI + +DM P MDRL+CGDVGFGKTEVA+RAAF VD+ +QV VL PTT Sbjct: 655 DETRDQLEAIADIKADMEAPKPMDRLLCGDVGFGKTEVALRAAFKCVDSGRQVMVLCPTT 714 Query: 660 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVK 719 +LAQQHY+ F +RFA + + +E++SRFR+ +Q + L AEG ID+LIGTH+LL +DV Sbjct: 715 ILAQQHYETFFERFAPFGLEVEVLSRFRTPAQQKRALKAFAEGTIDVLIGTHRLLSADVN 774 Query: 720 FKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 K+LG++I+DEE RFGV+HKE++K +R +D+LTL+ATPIPRT+ MA SG+RD+S+I TP Sbjct: 775 PKNLGMVIIDEEQRFGVQHKEQLKNLREQIDVLTLSATPIPRTMQMATSGVRDMSLITTP 834 Query: 780 PARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 839 P R V V EYD VV AI E+ RGGQVYY+ N V+ I A R+ E PEAR+ Sbjct: 835 PTGRRPVIVHVGEYDPDVVSAAIRLEVGRGGQVYYVSNRVKTIDDAVARVHEAAPEARVG 894 Query: 840 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899 + HG+M RE+E VM +F ++ +VL+ TTI+E+GID TANT+IIE + GLAQL+QL Sbjct: 895 VAHGKMSPREVEDVMIEFATKKIDVLIATTIVESGIDNATANTLIIEDSQRLGLAQLYQL 954 Query: 900 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959 +GRVGRS QAYA+ + P +T +A RL A++ +DLG+G +A DLEIRGAG L+ Sbjct: 955 KGRVGRSATQAYAYFMFPGELPLTEEATARLTALSEFQDLGSGMRIAMRDLEIRGAGSLM 1014 Query: 960 GEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS--LLPDDFI 1017 G EQ G++ ++GF L+ ++L AV + +D + V + +P+ L ++++ Sbjct: 1015 GAEQHGNLSSVGFDLFTQMLGQAVAEARGD-----DDAGVEAASVGINLPADYFLSEEYL 1069 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 P V+ R+ Y+++A+A+ ++E++ E G LP L + AR+R + ++LG+ Sbjct: 1070 PAVDQRVLVYRKLAAAEDLESIDEVQEETEAAHGELPLAGLNLFNRARIRIRGERLGLES 1129 Query: 1078 LEGNEKGGVIEF 1089 + GG I F Sbjct: 1130 V--TLSGGRITF 1139 Score = 56.6 bits (135), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 40/211 (18%), Positives = 90/211 (42%), Gaps = 10/211 (4%) Query: 67 VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGH 126 V + + P+ +P +++ R L ++ +++ L++ V P + Sbjct: 79 VCRFPERKDYPWREQAPDDAVVAQRCEALGRIVRGDNCIMVASARALLRCVPPVESRYWE 138 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 + G+ + D + +L GY + G + G +++FP + P R++FF Sbjct: 139 STTFAVGEEIPFDEVPQRLVGMGYTNAGAADAPGLFRVHGDTVEVFPAQEKAPVRIEFFG 198 Query: 187 DEIDSLRVFDVDSQRTLEEVEAINLLPAHEFP-TDKAA----IELFRSQWRDTFEVKRDP 241 DEID +R + +T+ ++I + P E TD+A + L+R+ D+ Sbjct: 199 DEIDRIRRMVSSTGQTIGNEDSIEIFPCRELALTDEAVHNMHVALYRASQDDS-----KL 253 Query: 242 EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPL 272 + + V + ++ + P+ + + + PL Sbjct: 254 AALLEMVDARIVTPELDRFLPVMYGQTVSPL 284 >UniRef50_Q83N19 Transcription-repair coupling factor n=4 Tax=Bacteria RepID=Q83N19_TROWT Length = 1291 Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust. Identities = 280/653 (42%), Positives = 410/653 (62%), Gaps = 25/653 (3%) Query: 431 EHGFVDTVRNLALICESDLLGERVARRR-QDSRRTINPDTLIRNLAELHIGQPVVHLEHG 489 + GF ++ LI E +L G+ ++ + SRR I+P L I VVH HG Sbjct: 575 QEGFSVPTKSFTLIGEHELFGKTTLQKAPRISRRAIDP-------INLAIDDYVVHEIHG 627 Query: 490 VGRYAGMTTL--EAGGITGEYLMLTYANDA-----KLYVPVSSLHLISRYAGGAEENAPL 542 + R+ GM + + EYL+L YA + KLY+P L +IS+Y G + L Sbjct: 628 IARFKGMCSRRPKHDAPEQEYLILEYAKNRLGVADKLYIPTDQLSMISKYIG--SDRPTL 685 Query: 543 HKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETT 602 ++GG W+ + +A + + +A +L+ +Y++R+ +G+AF D F + F + T Sbjct: 686 SRIGGSDWALTKSRARKAISSIALDLVKLYSRRSITKGYAFSPDTPFQTHFENEFLYTET 745 Query: 603 PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLA 662 DQ + I AV +DM MDR++ GDVGFGKTE+AMRAAF AV ++KQVAVLVPTTLLA Sbjct: 746 RDQEKTIVAVKADMENSKPMDRIISGDVGFGKTEIAMRAAFKAVQDNKQVAVLVPTTLLA 805 Query: 663 QQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 722 +QH F +RF WPV I +SRF+S E + + ++ G IDI+IGTH LL ++FKD Sbjct: 806 RQHIQTFCERFDKWPVTIASLSRFQSKSEIQKTICGISSGGIDIVIGTHMLLNKKIQFKD 865 Query: 723 LGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR 782 LGLLI+DEEHRFGV HKE IK ++ +DIL ++ATPIPRTL M++ G++++S ++TPP Sbjct: 866 LGLLIIDEEHRFGVNHKEAIKKLKIGIDILAMSATPIPRTLEMSLMGIKEISTLSTPPEN 925 Query: 783 RLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 842 R+ + T V Y V A+ REI+RGGQV+Y++ND I + A+RL +L+PEAR+ H Sbjct: 926 RMPILTHVGPYRDKQVIAAVRREIIRGGQVFYIHNDTATISRVAQRLEQLIPEARVVSAH 985 Query: 843 GQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGR 902 ++ ER LE+ + DF ++++LVCTTIIETG+D ANTIII+ A+++GL+QLHQLRGR Sbjct: 986 AKLAERMLEKTVIDFWEGKYDILVCTTIIETGLDNANANTIIIDSAENYGLSQLHQLRGR 1045 Query: 903 VGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEE 962 VGR +AYA+L + + A KRLEAIA LGAG +A DLE+RGAG LLG Sbjct: 1046 VGRGTKRAYAYLF--YTSTLKDTAYKRLEAIARNNHLGAGAQIAMKDLELRGAGSLLGHA 1103 Query: 963 QSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNT 1022 QSG + ++GF LY+ ++ +A+ K E + +E+ + + +P ++ Sbjct: 1104 QSGHIASVGFDLYIRMVTDAISNFKG------EQSRTNNLRLEIPVDASIPKAYVDSERL 1157 Query: 1023 RLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 R+ YK+I+ A ++ ++++I E++DRFG LP LL++ARLR A GI Sbjct: 1158 RIELYKKISEALSDADIKDIGDEILDRFGNLPSQVINLLELARLRILASSRGI 1210 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 48/225 (21%), Positives = 95/225 (42%), Gaps = 38/225 (16%) Query: 9 LPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVM 68 +P G + A+LV ++ +++I P ++A + + +++ Sbjct: 54 IPTGFAATACPGGFSACKVASLVGDVDS-----LLVILPS-EDACFTDTLRTYLPESIIL 107 Query: 69 NLADWETLPYDSFSPHQDIISSRLSTLYQ-----------------------------LP 99 N +W+TL ++ SP + +S+R+ L++ LP Sbjct: 108 NFPEWDTLLHEQISPSPERVSARMEALHKISLFRKNNKRAKNAQTSKTLHDIGILEDNLP 167 Query: 100 TM-QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVME 158 T+ Q+ V++ + MQ + + L G + L + Y D V Sbjct: 168 TIHQKLVVVASIKAFMQPIISDG--NPPCLYFHTGGEYELSEIANILVAMSYSRTDLVGA 225 Query: 159 HGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTL 203 GE+A RG +LD++P + P R++FF +++S+R F V QR++ Sbjct: 226 RGEFAIRGGILDIYPPTEKHPIRIEFFGRQLESMRHFRVSDQRSI 270 >UniRef50_D1PXI7 Transcription-repair coupling factor n=7 Tax=Bacteroidetes RepID=D1PXI7_9BACT Length = 1210 Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust. Identities = 281/680 (41%), Positives = 423/680 (62%), Gaps = 35/680 (5%) Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMT--TLEAGGIT----------GEYLMLTYANDAK 518 ++ L E+ G +VH++ G+G++ G+ + G T E + + Y N+ K Sbjct: 506 MKELQEMEPGDFIVHVDFGIGKFGGLVRVPIPTQGNTRQDATDDSQYQEVIRIIYQNNDK 565 Query: 519 LYVPVSSLHLISRYAGGAEENAP-LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAA 577 + V + SL+ IS+Y AP L LG AW R ++KA ++++D+A +L+ +YA+R Sbjct: 566 VDVSIHSLYKISKYRSSDAGEAPRLSTLGTGAWDRMKEKAKKRIKDIARDLIRLYAKRRK 625 Query: 578 KEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV 637 ++G+AF D Q SF +E TPDQ +A V +DM + MDRLVCGDVGFGKTEV Sbjct: 626 EKGYAFSPDSFMQQELEASFLYEDTPDQLKATQDVKADMERARPMDRLVCGDVGFGKTEV 685 Query: 638 AMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILA 697 A+RAAF A + KQVAVLVPTT+LA QH+ FRDR ++PVR++ +SR RSA + Q+L Sbjct: 686 AVRAAFKAACDSKQVAVLVPTTVLAFQHFQTFRDRLRDFPVRVDYLSRARSAGQTRQVLE 745 Query: 698 EVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTAT 757 ++ GKIDI+IGTHKLL +VK+ DLGLLI+DEEH+FGV KE+++ ++ NVD +T++AT Sbjct: 746 DLESGKIDIIIGTHKLLGKNVKWHDLGLLIIDEEHKFGVSTKEKLRKLKTNVDTITMSAT 805 Query: 758 PIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYN 817 PIPRTL ++ G RD+SI+ TPP R + T + + V+ +AI E+ R GQV+++ N Sbjct: 806 PIPRTLQFSLMGARDMSIMRTPPPNRYPIHTELSTFGHEVITDAINFEMSRNGQVFFVNN 865 Query: 818 DVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 877 + N+ + A + + +P+ R+AIGHG+M ELE+V+ F + ++VL+ TTI+E GIDI Sbjct: 866 RISNLPEIANLIQKHIPDCRVAIGHGKMSPEELEKVVMGFINYDYDVLLSTTIVENGIDI 925 Query: 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 P ANTIII A FGL+ LHQ+RGRVGRS+ +A+ +LL P +T +A++RLEA+ + Sbjct: 926 PNANTIIINGAHRFGLSDLHQMRGRVGRSNRKAFCYLLAPPKSVLTPEARRRLEALEAFS 985 Query: 938 DLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAV-------------D 984 +LG+GF LA DL+IRGAG LLG EQSG ME +G+ Y ++L AV D Sbjct: 986 ELGSGFNLAMQDLDIRGAGNLLGAEQSGFMEDLGYETYQKILTQAVTELRNDEFSDLYAD 1045 Query: 985 ALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKV 1044 A++ G+E S D + VE + PD F+P + R+ Y+ + + + +++L + Sbjct: 1046 AIEEGKEISGSDFV-EDCAVESDLEMYFPDTFVPGSSERMLLYRELDNIEDDDDLSAYRQ 1104 Query: 1045 ELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAW---LI 1101 L+DRFG +P L+ + LR+ ++LG K+ + ++F N +P + + Sbjct: 1105 RLVDRFGKVPREGEELMQVVALRRVGKRLGCEKVTLRQGMMTLQFV-SNQDSPFYQSPVF 1163 Query: 1102 GLLQKQPQHYRLDGPTRLKF 1121 G + K Y + P R F Sbjct: 1164 GRIIK----YVMANPRRCNF 1179 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/135 (30%), Positives = 71/135 (52%), Gaps = 3/135 (2%) Query: 117 VCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176 V + L + +K Q + L +L G+ D V E G++A RG+++D++ S Sbjct: 170 VVSQTHLDERRISLKTAQSIDITDLVHRLRELGFEEKDYVYEPGQFAVRGSIIDVYSFSS 229 Query: 177 ELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT-DKAAIELFRSQWRDTF 235 ELP+R+DFF DEID++R F V+ Q + + ++++P E T A I + DT Sbjct: 230 ELPFRIDFFGDEIDTIRTFTVEDQLSKDRKSGVDIVP--ELATLVSAKIPFLQFLPDDTV 287 Query: 236 EVKRDPEHIYQQVSK 250 V +D E++ + + Sbjct: 288 LVAKDMEYVSGMIER 302 >UniRef50_UPI0001745840 transcription-repair coupling factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745840 Length = 1117 Score = 529 bits (1362), Expect = e-148, Method: Compositional matrix adjust. Identities = 307/703 (43%), Positives = 424/703 (60%), Gaps = 51/703 (7%) Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRR----TINPDTLIR----NLAE 476 L +G GFV LA++ +++ G R Q++RR ++ ++R +L E Sbjct: 381 LALGLLHRGFVIPAAKLAVLTGAEVFG-----RYQNTRRFRGSKLDEAQVLRQARDHLRE 435 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 L G VVHL++G+G+Y G+ E G E +++ YA DAK++VPVS HL+SRY G Sbjct: 436 LREGDLVVHLDYGIGKYGGIEVRE-GARREEVMVIRYAEDAKVFVPVSQAHLVSRYVGVG 494 Query: 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596 L+KLG W + R +A + V + AA +L I AQR +G A D + F S Sbjct: 495 SRAPTLNKLGDARWVKTRAQAEKSVEEFAAGMLSIAAQRQTLKGHAHPPDTKWQVEFEQS 554 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 F + TPDQ ++I + DM Q MDRL+CGDVGFGKTEVA+RAAF AV KQVAVLV Sbjct: 555 FLYRETPDQLKSIAEIKRDMEQEKPMDRLLCGDVGFGKTEVAIRAAFKAVMGGKQVAVLV 614 Query: 657 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS 716 PTT+LAQQH F++R +++PV +EM+SR AK + +IL V +G +DI++GTH+++ Sbjct: 615 PTTVLAQQHLATFKERMSDYPVTVEMLSRLTPAKREKEILKGVKDGTVDIVVGTHRVISK 674 Query: 717 DVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 776 DV+FK LGL ++DEE RFGV+HKER K + VD+LTL+ATPIPRTL + + GMRD+S + Sbjct: 675 DVQFKQLGLAVIDEEQRFGVKHKERFKQLFRLVDVLTLSATPIPRTLYLGLVGMRDMSTL 734 Query: 777 ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 TPP R AV+T V YD ++R+AI +EI RGGQV++L+N V +++K +L L P+A Sbjct: 735 DTPPPNRHAVQTSVCGYDERIIRDAINKEIERGGQVFFLHNRVMDMEKMKAKLEALSPKA 794 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 R+ IGHGQM E LE VM F +VL+CTTIIE+G+DIP ANTIII+RAD FGLA L Sbjct: 795 RVVIGHGQMDETLLEDVMRRFIAGEADVLLCTTIIESGVDIPNANTIIIDRADRFGLADL 854 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 +QLRGRVGR +A+A+L+ P DA+KR+ AI LG+GF +A DLEIRGAG Sbjct: 855 YQLRGRVGRGGERAHAYLMLPRDLMTVGDARKRVTAIKQYTALGSGFKIAMRDLEIRGAG 914 Query: 957 ELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP-----SLE---------------D 996 LLG EQSG + IGF LY ++L++A L+ R P SL D Sbjct: 915 NLLGTEQSGHIFAIGFDLYCQMLKSATARLQGRRTPPPMEVSLRVDFLCMSEAQWLQEAD 974 Query: 997 LTSQQ-----------------TEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENEL 1039 T Q+ T E R+P +P +I D +R++ Y+ + T EL Sbjct: 975 GTPQKRVTAATAHRPPDRQKLVTANEWRIPCFIPQSYIEDARSRITAYRLLGEVLTRKEL 1034 Query: 1040 EEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNE 1082 + ++ D++G P LL A ++ A I +E E Sbjct: 1035 DTLERNWRDQYGPPPPAVENLLVCAGIKLAAAHASISAVEVKE 1077 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 65/108 (60%) Query: 105 VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYAT 164 VL++ ++L + V L + ++ G +L +AL L SAGY V V E G+ A Sbjct: 153 VLVICADSLDEEVPALHELEAGKMSLQTGMKLDVEALLQDLGSAGYERVPVVTERGQVAR 212 Query: 165 RGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLL 212 RG ++D+F +E P R++FFDDE++SLR FD+ +Q +++ + + LL Sbjct: 213 RGGIVDVFSWQAEEPLRMEFFDDELESLRSFDIHTQTSVQRFQRMQLL 260 >UniRef50_C1A9L3 Transcription-repair coupling factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9L3_GEMAT Length = 1104 Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust. Identities = 277/610 (45%), Positives = 393/610 (64%), Gaps = 15/610 (2%) Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 L L G VVHLEHG+G Y G+ + T E ++ Y +L VP+ + I RY Sbjct: 434 TLGALKPGDYVVHLEHGIGIYRGIEKIFVRESTIESAVIEYEGGDRLNVPLYRIDQIERY 493 Query: 533 --AGGAEENAP---LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 587 A ++AP LHKLGG+ W R+K + ++ ELL++YA+R D Sbjct: 494 RSAHDVSDDAPAPRLHKLGGNKWKAQREKTRMAILEMTQELLELYARRKVTTRPPHGADG 553 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 + SF FE TPDQ +A V D+ MDRL+ GDVG+GKTE+A+RAAF AV Sbjct: 554 AWQRQLESSFLFEDTPDQRKATEDVKRDLEGERPMDRLLVGDVGYGKTEIAIRAAFKAVQ 613 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 +QVAVLVPTT+LA+QH +F DR A++PV +E++SRF++A +Q ++ ++ + ++DI+ Sbjct: 614 GGRQVAVLVPTTILAEQHARSFGDRLADFPVTVEVMSRFQTASQQAVVVEKLKKKQVDIV 673 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 IGTH+LL DV F DLGL+IVDEEHRFGV+HKER+K ++ + D+LTLTATPIPRTL+ ++ Sbjct: 674 IGTHRLLSPDVAFGDLGLIIVDEEHRFGVKHKERLKQLKLSTDVLTLTATPIPRTLHQSL 733 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 +G+RDL+++ T P R V TFV +D ++ EAI RE+ RGGQV++++N +E I+ A+ Sbjct: 734 AGLRDLTLMQTAPRDRSPVLTFVEPFDDALIEEAISRELDRGGQVFFVHNRIETIEAIAD 793 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 L +VP AR+A+GHGQM+ERELE+VM F ++LV T I+E+G+D+P ANT+ + R Sbjct: 794 HLRRIVPRARVAVGHGQMKERELEKVMRQFVEGEVDILVSTLIVESGLDVPNANTMFVNR 853 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 ADH GLAQL+QLRGRVGRSH +AY +LL P + DA++RL + +LGAG+ +A Sbjct: 854 ADHLGLAQLYQLRGRVGRSHRRAYCFLLV--PDRVDEDAERRLAVLEHHTELGAGYRVAL 911 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK--AGREPSLEDLTSQQTEVE 1005 DLE+RGAG LLG EQSG + +GF LY+ LL+ V L G++P + +V Sbjct: 912 KDLELRGAGNLLGPEQSGFVHAVGFDLYLRLLDETVRLLADGGGQKPWI------PADVN 965 Query: 1006 LRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIAR 1065 L P+ LPD++I +L Y+R+ + + +E +K E+ DRFG LP A L A Sbjct: 966 LDFPAYLPDEYIISQEAKLDVYRRLTAMRDVAAIEALKREVRDRFGALPPAADALFGSAV 1025 Query: 1066 LRQQAQKLGI 1075 LR L + Sbjct: 1026 LRVLGAMLSV 1035 Score = 82.8 bits (203), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 12/207 (5%) Query: 13 AGEQRLLGELTGAACATLVAEIAERHAGP---VVLIAPDMQNALRLHDEISQFTDQMVMN 69 AG +G L G++ A LVA +A A P VV+IA + +A R ++ D + + Sbjct: 27 AGASLRVGGLAGSSDAVLVAGLA--RALPQRLVVVIADQLGDAERWLADLQALLDDVPVA 84 Query: 70 LADWETLPYDSFS---PHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGH 126 L P + F PH ++ R+ TL +L +L+ +++R L G Sbjct: 85 LYP----PREGFGEVEPHAEVAGERVETLEKLGRSAVRILLTTSRAVLERTALPRALSGA 140 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 L ++KG + L T L+S G+ V V + +++ RG + D++ G P RL+F+ Sbjct: 141 RLELRKGDQRRLSDLVTHLESIGFERVPMVEDVAQFSVRGGIFDIYSFGMAEPVRLEFWG 200 Query: 187 DEIDSLRVFDVDSQRTLEEVEAINLLP 213 D+I LR FD+++QR+ + E +LP Sbjct: 201 DDIIELRHFDLNTQRSTRDAELALILP 227 >UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Anaerococcus RepID=C7RHN4_ANAPD Length = 1170 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 265/637 (41%), Positives = 414/637 (64%), Gaps = 11/637 (1%) Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 I N ++L IG VVH +G+G Y G+ +E I +++++ Y KL+VPV ++LIS Sbjct: 495 IINYSDLDIGDYVVHENNGIGIYKGLEKIEVNNIEKDFIVIEYRGTDKLFVPVDQMNLIS 554 Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 +Y G E+ L LG W +A+ +A + V ++A +L+++YA+R+ +G AF D Sbjct: 555 KYIGSRGESPKLSSLGTQTWQKAKARAKKAVDEIADDLVELYAKRSKIKGHAFSKDTTWQ 614 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 F +SFP+E T Q ++I + +DM MDRL+CGDVGFGKTEVA+RAAF A+ + Sbjct: 615 NEFENSFPYEETYSQIRSIEEIKNDMESDKPMDRLLCGDVGFGKTEVAIRAAFKAIMDGY 674 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 QVA LVPTT+LA QHY+ + RF +PV +++ISRF + I+ ++ GK+D++IGT Sbjct: 675 QVAFLVPTTILANQHYETIKRRFDKFPVNVQVISRFNPGSKNKLIIKDLKAGKVDLIIGT 734 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H+LL DV +K+LGLLI+DEE RFGV+HKE++K +++++D+LTL+ATPIPRTL M++SG+ Sbjct: 735 HRLLSKDVGYKNLGLLIIDEEQRFGVKHKEKLKELKSSLDVLTLSATPIPRTLQMSLSGI 794 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 RDLS + P R+ V T+V EYD+ ++++AI RE+ R GQVY++YN V +I+K L Sbjct: 795 RDLSTLDEAPEERMPVNTYVLEYDNGIIKQAIERELNRNGQVYFVYNRVNDIEKLYNHLI 854 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 ELVP+A IAI HG++ +++E+ M +F ++L+ TTIIETG+DI NTIII +D Sbjct: 855 ELVPDANIAIIHGRISPKQIEKTMLEFIDGEIDILLSTTIIETGMDISNVNTIIIYDSDM 914 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 GL QL+QL+GR+GR + +YA+ K ++ ++KRL++I D G+G+ +A DL Sbjct: 915 MGLGQLYQLKGRIGRGNRSSYAYFTYRTGKILSEISEKRLKSIRDFSDFGSGYKIAMKDL 974 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS 1010 E+RGAG LLGE QSG +E IG+ LY++ L+ AV+ +G+E ++D +++++ Sbjct: 975 ELRGAGNLLGESQSGHVEAIGYDLYVKFLQEAVEK-ASGKEVEIKD--KSDVYIDIKVDG 1031 Query: 1011 LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQA 1070 +P+ +I D ++ Y RIA + + + +E+ +LID +G +P L+ I+ ++ A Sbjct: 1032 YIPNFYIEDQAQKIEIYNRIARIQNQEDYDELVADLIDVYGDIPIMVDNLMYISLIKSMA 1091 Query: 1071 QKL---GIRKLEGN-----EKGGVIEFAEKNHVNPAW 1099 +L IR+ GN E F E +N ++ Sbjct: 1092 DELLFSEIREKSGNVNIYFENKDAFSFEELAEINQSF 1128 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 66/309 (21%), Positives = 128/309 (41%), Gaps = 20/309 (6%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 L LT LV + E+ +V+IA + + A D I+ + + Y Sbjct: 29 LSGLTDGFKPHLVLALFEKFKESLVIIAENEKRAEIYLDSINGIIENKAYLFPSLDINFY 88 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 + S +S R+ L +L + ++I + + ++ + + +K + Sbjct: 89 NIKSIDNRKLSQRMEVLTKLAKGENFIVITTLKAMTNKLTTLDRFNKSFVKIKDEDIIDV 148 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 + L + Y V G++A RG+++D +P+ + P R++ FDDE+DS+R+FD D Sbjct: 149 NNFIENLINLNYTANSLVENKGDFAKRGSIIDFWPVSYDNPVRIELFDDEVDSIRLFDKD 208 Query: 199 SQRTLEEVEAINLLPAHEFPTDKAAIE-LFRSQWRDTFEVKRDPEHI--------YQQVS 249 SQRT+E++ + P E K + + ++ R+ + D + I Y+Q++ Sbjct: 209 SQRTIEKISEAEISPVTELIYSKDDYDKVIKNINREIMSLDNDSKEINRQKLIDKYKQIT 268 Query: 250 ----KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG------DLETSAERFQADT 299 + + I+ P + + Y P + L+ D + E F D Sbjct: 269 AFIEESMFVSNIDLVNP-YRKDDYSSFLDYIPKSGLIFFDDVARVIEDYDNFYENFFEDL 327 Query: 300 LARFENRGV 308 + EN V Sbjct: 328 SLQMENNEV 336 >UniRef50_C0QQC7 Transcription-repair-coupling factor (Trcf) (ATP-dependent helicase mfd) n=2 Tax=Hydrogenothermaceae RepID=C0QQC7_PERMH Length = 947 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 262/611 (42%), Positives = 400/611 (65%), Gaps = 14/611 (2%) Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY-AGGAEE 538 G ++H + G+G + G+ T E G ++++L YAN+ K+YV I RY A G Sbjct: 297 GDYIIHEDFGIGIFRGIETREIRGKKYDFMILEYANNEKVYVSYLHFDKIHRYKASGV-- 354 Query: 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFP 598 L ++GG +W ++K ++ +A +L+ +Y +R + + + F SFP Sbjct: 355 -ITLDRIGGTSWRNLKRKVKNSLKKIAFQLVKLYTERKQIRRDPLVVENDLIEAFERSFP 413 Query: 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 658 + TPDQ +AI + D+ M+R++CGDVGFGKTEVA+RA F+ N KQ VLVPT Sbjct: 414 YIETPDQLKAIKDIKRDLSSDRPMERVICGDVGFGKTEVAIRAVFINAVNGKQSLVLVPT 473 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 T+L+ QHY NF++R + V +E +SR +S KE I V EGKID++IGTHK L ++ Sbjct: 474 TVLSYQHYRNFKERLEPFGVVVENLSRLKSKKETEDIFKRVKEGKIDVIIGTHKALNENL 533 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 KFK+LGLL++DEEHRFGVR KE+IKA++ +VD L +TATPIPRTLNMA+SG++D+S+I+T Sbjct: 534 KFKNLGLLVIDEEHRFGVRAKEKIKALKKDVDTLYMTATPIPRTLNMALSGLKDMSVIST 593 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 PP R+ KTFV + ++++A+ E+ RGGQV+YL+N +E+I++ A+ L+ L ARI Sbjct: 594 PPEGRVETKTFVSIFSEDLIKKAVNFELERGGQVFYLHNRIESIKERADHLSSLFRGARI 653 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 I HG+MR +E+E+++ +F ++ ++LV T+IIETGIDIPTANT+IIERAD FGLAQL+ Sbjct: 654 GIAHGKMRPKEIEKIILEFIERKIDILVSTSIIETGIDIPTANTLIIERADLFGLAQLYH 713 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 LRGRVGR + QAY +LL P P+ +T +A+KR++ I L G+G ++ D++IRG G + Sbjct: 714 LRGRVGRGNIQAYCYLLLP-PQ-ITENAEKRIDVILRLTRPGSGLKVSIEDMQIRGVGNI 771 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIP 1018 LG EQSG ++ +G+ +Y++LL+ A++ RE ++ +++ S +P+DFIP Sbjct: 772 LGVEQSGHIKAVGYEMYLKLLQEAINEEMDRRE--------REPVIQVDFESYIPEDFIP 823 Query: 1019 DVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 D R++ Y IA E++ +K L + + +P L+I++L++ A+ GI K+ Sbjct: 824 DPQERMNIYMAIAKTTDIEEIDRLKEYLKNFYDFIPSAFSLYLEISKLKKAAKNSGITKI 883 Query: 1079 EGNEKGGVIEF 1089 E E I F Sbjct: 884 ELKEPVSTIYF 894 >UniRef50_D1Y8J9 Transcription-repair-coupling factor n=2 Tax=Synergistaceae RepID=D1Y8J9_9BACT Length = 990 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 284/673 (42%), Positives = 415/673 (61%), Gaps = 22/673 (3%) Query: 433 GFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGR 492 G V RN I +++L G + + IN + A L Q V+H ++GV + Sbjct: 307 GVVVKDRNEIWISDAELFG-----INEVAEEEINRGMPLDLEASLKKDQWVIHEKYGVCQ 361 Query: 493 YAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG-GAEENAPLHKLGGDAWS 551 G + GG E ++L +A++ +L +P + L ++ + G G E L L W Sbjct: 362 LEGTSVENFGGQDYETIVLRFADNERLIIPTAELFRLTPWNGNGVPE---LDSLKSKRWR 418 Query: 552 RARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINA 611 A +KA ++ A LL++YAQR +G AF D + + F +SFP++ T DQ +AI Sbjct: 419 SAWKKAEAQIEAEAQGLLNLYAQRELADGRAFGRDGDLLKRFEESFPYKETVDQLRAIRD 478 Query: 612 VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRD 671 V DM + MDRL+ GDVG+GKTEV +RAA V+N Q A++ PTT+LA QHY Sbjct: 479 VKHDMERRWPMDRLIVGDVGYGKTEVVLRAAVKTVENGAQAAIIAPTTVLALQHYRTCVA 538 Query: 672 RFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEE 731 R P+R+E++SR K+Q +IL E A G++DILIGTH+L Q D++FKDLGLLI+DEE Sbjct: 539 RVGELPIRVELLSRMIPKKKQKEILDETANGRVDILIGTHRLFQDDIRFKDLGLLIIDEE 598 Query: 732 HRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVR 791 HRFGV+HKER+K +D+L+L+ATPIPR+L+MAM G+RD+S+IAT P R V T Sbjct: 599 HRFGVKHKERLKVAHPGLDVLSLSATPIPRSLSMAMRGIRDISVIATSPRGRGEVFTVTS 658 Query: 792 EYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELE 851 +D + +A+LRE++RGGQVYYL+N +++I++ A RLA P R A+ HGQM ERELE Sbjct: 659 RWDPSLAHDAVLRELMRGGQVYYLHNRIDDIEQIAARLANRFPGHRTAVAHGQMGERELE 718 Query: 852 RVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAY 911 + MN+F+ + +LVCTTIIE+G+D+P ANT+I++ GLAQ+HQ+RGR+GR AY Sbjct: 719 KTMNEFYDGKIEILVCTTIIESGLDVPRANTLIVDDVRRLGLAQMHQIRGRIGRRSENAY 778 Query: 912 AWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIG 971 A L + ++RLEA+ ++ G+ LA DLEIRGAGE+LG EQ G E IG Sbjct: 779 A-LFFYESEESGGQTRERLEALGAVGSQNGGYQLAQRDLEIRGAGEILGTEQHGFKERIG 837 Query: 972 FSLYMELLENAVDALKAGR-EPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI 1030 ++LY++ L+ VD L+ +P+L V+L MP ++P D++P + R+ Y+R+ Sbjct: 838 YTLYLKKLKERVDQLRGIEIKPAL---------VDLAMPLVIPVDYVPQTDLRIGLYRRL 888 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE-- 1088 S + E EE++ EL+DR+G LP+ + LLD A +R + LGI +L +E +E Sbjct: 889 LSPLSAQEYEEMQAELLDRYGPLPEQVQGLLDAALVRGEGGALGIERLRVSEAFVALEGP 948 Query: 1089 FAEKNHVNPAWLI 1101 E P W++ Sbjct: 949 LGEDIFSPPRWIV 961 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 54/174 (31%), Positives = 83/174 (47%), Gaps = 14/174 (8%) Query: 37 RHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETL---PYDSFSPHQ-DIISSRL 92 R ++++ P Q AL L +D V+ + + L P DS D R Sbjct: 2 RGCEKILVLVPTRQEALALD------SDLKVLEVGESRLLEEPPLDSEKLRSGDSFLRRG 55 Query: 93 STLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRH 152 TL + G+L+ L V P F L + G+RL RD L + L GYR Sbjct: 56 HTLSGWLNAKSGMLVATPGAL---VTPFRF-GKTGLTLAAGKRLGRDTLTSWLAENGYRR 111 Query: 153 VDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEV 206 + V + GE+A RGAL+D F + P R++FFD++++S+R F SQR+ + + Sbjct: 112 AELVWQPGEFAVRGALVDFFDPSEKAPLRVEFFDEDVESIRFFQPRSQRSFQNL 165 >UniRef50_A2BWG1 Transcriptional-repair coupling factor n=11 Tax=Prochlorococcus marinus RepID=A2BWG1_PROM5 Length = 1175 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 258/662 (38%), Positives = 419/662 (63%), Gaps = 18/662 (2%) Query: 433 GFVDTVRNLALICESDLLGERV------ARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 GF + + LI + +L ++ RRR +R++N + N+ +++ G +VH Sbjct: 448 GFYLPIWKIILITDKELFSQQALFNNVFIRRR---KRSVNSNI---NVNKINPGDYIVHK 501 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLG 546 HG+G++ + + G + +YL++ Y D K+ V L I+RY + ++KLG Sbjct: 502 NHGIGQFLKLEKINITGESRDYLVIKYL-DGKISVAADQLGSINRYRSTGKIMPKINKLG 560 Query: 547 GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606 G W + + K + ++ VA ++L +YA+R +G + D + +SFP++ TPDQ Sbjct: 561 GAEWLKIKDKNRKIIKKVAYDILKLYAKREKLKGHIYPEDGPWQKELEESFPYQPTPDQL 620 Query: 607 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 666 A+ + DM MDRLVCGDVGFGKTEVA+RA F A+ + KQV +L PTT+LAQQH+ Sbjct: 621 TAVKEIKIDMESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQVILLAPTTILAQQHW 680 Query: 667 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 F +RF+ +P+++ +++RF+++ E+ I A + KID+++ TH++L +++ K+LGLL Sbjct: 681 RTFNNRFSPYPIKVSLLNRFKTSSEKKDIYAGLKNNKIDLVVATHQILGKEIEIKNLGLL 740 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 ++DEE RFGVR KE+IK ++ N+D+LTL+ATPIPRTL M++SG+R +S++ TPP R ++ Sbjct: 741 VIDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIPRTLYMSLSGLRQMSLLNTPPPSRRSI 800 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 KT++ E D V+R AI +E+ RGGQ++Y+ + +I +A +L + + + + HGQM Sbjct: 801 KTYLSEIDMDVIRTAISQELDRGGQIFYVLPRISDIDQAVNKLTNMFNDLKFIVAHGQMN 860 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 E +LE M F++ ++++CTTIIE+G+DIP NTIIIE + FGL+QL+QLRGRVGRS Sbjct: 861 EIDLENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHKFGLSQLYQLRGRVGRS 920 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 QA+AWL P+ + +++RL+AI +LG+G+ LA D+EIRG G LLGEEQSG Sbjct: 921 GIQAHAWLFYPNLNNINEASKQRLKAIKDFSELGSGYQLAMKDMEIRGVGSLLGEEQSGK 980 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026 + IG+ LY+E+L A+ + P ++D T+V+L + + +P +I + +L Sbjct: 981 VNAIGYDLYIEMLHEAISEINGQEIPEVKD-----TQVDLPINAFIPATWILNREEKLDA 1035 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGV 1086 YK T EL E+ + +R+G+LP P +L+ + +L+ A+K G K++ + + Sbjct: 1036 YKEATECNTHKELTELATDWSNRYGVLPKPVESLILLMKLKLLAKKCGFNKIKLKKPNII 1095 Query: 1087 IE 1088 IE Sbjct: 1096 IE 1097 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 46/204 (22%), Positives = 107/204 (52%), Gaps = 4/204 (1%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLA 71 K E ++G + A + ++ +A++ ++L++P+ + A + + + ++ ++ Sbjct: 25 KNKELNIIGS-SRYAKSIIINSLAKKENKNIILVSPNEEIAYKWYGYFNSIGNRNILYYP 83 Query: 72 DWETLPYDSFSPHQDIISSRLSTLYQLPTM---QRGVLIVPVNTLMQRVCPHSFLHGHAL 128 + LPY S + ++ S+LS + +L ++ ++I +L + + + Sbjct: 84 PSKNLPYGSINKSKETEYSQLSVISKLINNDKEEKNIIITTERSLQPHLIKKNIFKQKII 143 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 + KG + L +QL S GY + + G ++ RG ++D++P+ +ELP R++FFD+ Sbjct: 144 TLNKGLAIEIKELTSQLVSLGYNKENLTSQEGSWSRRGEIIDIYPVNNELPIRIEFFDNI 203 Query: 189 IDSLRVFDVDSQRTLEEVEAINLL 212 ID +R +D +QRTL+ + + ++ Sbjct: 204 IDKIREYDPVTQRTLDSINKVEIV 227 >UniRef50_C5CIP9 Transcription-repair coupling factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIP9_KOSOT Length = 1018 Score = 518 bits (1335), Expect = e-145, Method: Compositional matrix adjust. Identities = 276/616 (44%), Positives = 408/616 (66%), Gaps = 7/616 (1%) Query: 467 PDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSL 526 P + + +EL G VVH+E+G+G++ G+ + T EYL + Y +K+YVP+ L Sbjct: 344 PKAPVFDWSELEEGDFVVHIEYGIGKFLGIRKINGVLGTREYLTIEYREGSKIYVPIERL 403 Query: 527 HLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 + +Y G + N L+ L G+AW + +++ ++V++ EL +Y R G + K D Sbjct: 404 DRVHKYVGDTD-NIQLNSLRGNAWKKRKKRVEKEVKERIKELALLYGTREHLRGLSLKGD 462 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 F SFP T DQA+AI VL D+ MDRLV GD G+GKTEVA+RAAF AV Sbjct: 463 PTLEDAFKRSFPHLETEDQAKAIEEVLDDLADEKPMDRLVSGDAGYGKTEVALRAAFRAV 522 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 + KQV++LVPTT+LA+QHY+ F++R + V ++++ R+R+ KE+ +IL E+ GKID+ Sbjct: 523 VSGKQVSILVPTTVLARQHYETFKNRLEPFGVNVDILDRYRTPKERQKILRELKNGKIDV 582 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 +IGTH LL DV+F DLGL+I+DEE FGV KE +K +R V++LT++ATPIPRTL MA Sbjct: 583 IIGTHSLLSKDVRFADLGLVIIDEEQLFGVMQKEHLKKLRLEVNVLTMSATPIPRTLYMA 642 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 +SG+R+LS+IATPP R +T+V + ++R A+LREI RGGQV Y++N V + K Sbjct: 643 LSGLRELSMIATPPIGRTMPETYVGPVNDRLIRTAVLREINRGGQVIYVHNRVNELNKLE 702 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 ++ L+PE I + HGQM +R E+ + DF+ + +L+CTTIIE+G+DIP ANT+I++ Sbjct: 703 NKIRTLLPEVEIGVAHGQMPKRLFEKNVGDFYSGKLQMLLCTTIIESGVDIPNANTLIVD 762 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 + +GLAQL+QLRGRVGRS +A+A+ L +PK +T A++RL+A+ G+G LA Sbjct: 763 DSQRYGLAQLYQLRGRVGRSTRRAFAYFLY-NPKRLTPKAKERLKALREFSGPGSGMKLA 821 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVEL 1006 D+EIRG GELLG+EQ G++ +IG LY E++E AV + +E LE L + + EL Sbjct: 822 IKDMEIRGFGELLGKEQHGNISSIGLYLYKEMVERAVAEARGIKE--LEPLEEKFIDTEL 879 Query: 1007 -RMPS--LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDI 1063 +P ++P+++I D R+ Y+RIA +++ E+ EI+ EL DRFG LPD R+LLD Sbjct: 880 HNIPYDMVIPEEYINDSFERMKIYRRIAMSRSVEEITEIEEELKDRFGTLPDEVRSLLDA 939 Query: 1064 ARLRQQAQKLGIRKLE 1079 AR+R A L I+ +E Sbjct: 940 ARIRIAAYNLSIKFIE 955 Score = 67.0 bits (162), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 50/199 (25%), Positives = 92/199 (46%), Gaps = 10/199 (5%) Query: 31 VAEIAERHAGPVVLIAP---DMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDI 87 V E ER V+I P ++Q L H S D+ + D P++ + Sbjct: 16 VIENLERIPESSVIIFPSERELQRFLSFH---SPSGDEGIFFSHD--VFPFEDVRVSAYV 70 Query: 88 ISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDS 147 + R+S L L + ++ ++++ P + G ++ +L Sbjct: 71 RNHRMSCLSNLQNKNIKRIYTSLDAILRKTLPPEAMKGSTKKIRIDDPFGFHP--DKLVE 128 Query: 148 AGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVE 207 GY V V+E G+++ +G ++D+F GS LPYRL FDD ++ +++FD +QR+++ + Sbjct: 129 MGYERVFTVVEPGQFSWKGEVVDIFVPGSVLPYRLILFDDIVEEIKLFDPGNQRSVKHIS 188 Query: 208 AINLLPAHEFPTDKAAIEL 226 I + PA E T + + L Sbjct: 189 EIEIFPAGEVLTIEENVSL 207 >UniRef50_C1XT24 Transcription-repair coupling factor (Superfamily II helicase) n=2 Tax=Meiothermus RepID=C1XT24_9DEIN Length = 988 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 305/747 (40%), Positives = 432/747 (57%), Gaps = 35/747 (4%) Query: 313 PLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLD 372 P L P LW + E ++ L LP +LG+Q LP + Q ++ Sbjct: 185 PSLAPGELWQHL-----EGRDLVTFGLGGPELP----KLDLGYQALPPYRARIAQF--VE 233 Query: 373 ALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEH 432 +R++ E G V+F ++GR L ++++ R E L+ G E Sbjct: 234 EVRRWTEQDYGVVLFYKHAKGR----AYLESKLQGINLRKSGRFECKPGWITLVPGGFEG 289 Query: 433 GFVDTVRNLALICESDLL----GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEH 488 ++D + E L G+ RR + T +P L G ++H EH Sbjct: 290 AYLDPEAKAVCLTEPHLYAFGSGQAGPSRRIVTGETGDPSALAP-------GDYLIHPEH 342 Query: 489 GVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 548 G+G++ G+ E G+ +YL+L YA +A+LY+PV L L+ R+ G ++ L LG Sbjct: 343 GIGQFVGLEPREILGVKRDYLILQYAGEARLYLPVEQLPLLKRHPGTTDDPPRLSSLGKG 402 Query: 549 AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 608 W +AR+KA + ++AA +L ++A+R A G A+ E L +FP+ TPDQ ++ Sbjct: 403 EWKKAREKAQKDAEELAARMLVLHAKRQATPGRAWAPIPEWDSLIEKNFPYALTPDQEKS 462 Query: 609 INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDN 668 + D+ P MDRL+ GDVGFGKTEVA+RAA V + QVA+LVPTTLLA+QH Sbjct: 463 LEDTFRDLEAPRPMDRLISGDVGFGKTEVALRAAHRVVGHGAQVALLVPTTLLAEQHTQT 522 Query: 669 FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 728 F+ RF PVR+E +SRF S ++ +IL ++ G +DI+IGTH+LL D++FKDLGLLI+ Sbjct: 523 FKSRFEGLPVRVEGLSRFTSELDEQRILRDLEAGAVDIVIGTHRLLSGDLRFKDLGLLII 582 Query: 729 DEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 788 DEEHRFGV KERI+ + VD L L+ATPIPRTL A+ G++DLS I TPP R ++T Sbjct: 583 DEEHRFGVAQKERIREIAETVDTLYLSATPIPRTLYSALVGLKDLSSIQTPPPGRKPIQT 642 Query: 789 FVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 848 + YD +VREAIL E+ RGG+V+Y+++ V IQ L + PEARI + HGQM E Sbjct: 643 VLAPYDPSLVREAILSEMERGGKVFYVHDRVATIQARQRYLENIAPEARIGVVHGQMPEG 702 Query: 849 ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908 ++E VM F F+VL+ TTIIE+G+DIP ANTI+IERAD GLA L+QLRGRVGR Sbjct: 703 DIEEVMLAFAEGAFDVLLATTIIESGLDIPEANTIVIERADRLGLAALYQLRGRVGRRDQ 762 Query: 909 QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSME 968 +AYA+ HP +T A++RL AIA L DLG+G LA D+EIRG G LLG EQ G + Sbjct: 763 EAYAYFF--HPPRLTEAAERRLSAIADLSDLGSGHLLAEKDMEIRGVGNLLGPEQHGHIR 820 Query: 969 TIGFSLYMELLENAVDALKAGR-EPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFY 1027 + +Y ELL A+ LK + EP + ++L + + L ++IP R +Y Sbjct: 821 AVSLEIYTELLAEAIAKLKGEKTEP------EKHVTLDLAVSARLTPEYIPSAAARSRYY 874 Query: 1028 KRIASAKTENELEEIKVELIDRFGLLP 1054 R+A AK ++ I EL +R+G P Sbjct: 875 GRLAEAKRLAQVARIAGELRERYGEPP 901 >UniRef50_C1TQS1 Transcription-repair coupling factor Mfd n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQS1_9BACT Length = 1014 Score = 514 bits (1324), Expect = e-144, Method: Compositional matrix adjust. Identities = 289/663 (43%), Positives = 408/663 (61%), Gaps = 14/663 (2%) Query: 433 GFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGR 492 GF+D + + + ++ G R RR + R+ D I A +VH +HG+ R Sbjct: 326 GFIDDEEKMVFLSDVEMYGIRPDRRTE--RQGTPKDWSILFEAR----DWLVHEDHGLCR 379 Query: 493 YAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSR 552 Y G+ ++E E+L+L + + +L +P + IS Y G +E+ +LG WS Sbjct: 380 YGGLESVEGSWGRQEFLVLEFQDKKRLLLPTGQISRISPYKGSVDESTVPDRLGSSRWST 439 Query: 553 ARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAV 612 + +KA ++ + A ELL++YA+R +G AF D E + F SFP E T DQ +AI+ V Sbjct: 440 SLRKAERQIEEEAKELLELYAKRKIAKGHAFSPDGEAMEEFERSFPHEETIDQLKAISDV 499 Query: 613 LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDR 672 DM P MDRLV GDVG+GKTEVA+RA F A + QV VLVPTT+LAQQHY FR R Sbjct: 500 KKDMESPRPMDRLVVGDVGYGKTEVALRAVFKAAMDGFQVLVLVPTTVLAQQHYMTFRSR 559 Query: 673 FANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH 732 +P+++E++SRF S + Q +IL +A+G +D++IGTH+LLQ+D+K + LGL+IVDEEH Sbjct: 560 MGPFPLKVELLSRFVSQRRQNEILTGLADGSVDVVIGTHRLLQNDLKIRRLGLIIVDEEH 619 Query: 733 RFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE 792 RFGV HKER + +R+ VD+LTL+ATPIPRT +MAM GMRD+SII TPP R A+ T Sbjct: 620 RFGVAHKERFRKLRSGVDVLTLSATPIPRTFSMAMKGMRDVSIIETPPGNRPAIITVTGA 679 Query: 793 YDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 852 +D +VR+A+ RE+ RGGQVY L+N V I++ A + P+ R+A HG+MRE ELE Sbjct: 680 WDDGLVRKALAREMARGGQVYMLHNRVGTIEERAGWVKSRFPDVRVAFAHGRMRENELEE 739 Query: 853 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 M F+ ++LVCTTI+E+G+D+ ANT++++ + GLAQ+HQLRGRVGR AYA Sbjct: 740 TMMAFYDGEIDILVCTTIVESGLDVGRANTLVVDDSRLLGLAQMHQLRGRVGRRDDTAYA 799 Query: 913 WLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF 972 + L P + +RL+AI L GAG+ LA DL IRG G+LLG Q G E +G Sbjct: 800 FFLYPSDCVLPHSTAERLDAIGRLSFQGAGYELAKEDLHIRGGGDLLGMSQHGHRERVGL 859 Query: 973 SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIAS 1032 LY L + VD L+ G T+ +TE+E+R+P +P+ +I RL+ Y+RI Sbjct: 860 QLYYRKLRDEVDRLRGG--------TTGETEMEIRIPLSIPESYISVSALRLAIYRRIDE 911 Query: 1033 AKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEK 1092 + E ++ EL DRFG +P LLD+A LR +K GI + +E+ I EK Sbjct: 912 IEDLEGRENLRNELQDRFGPIPSEVDRLLDLALLRTICRKRGIIRCMLSEERCEITLGEK 971 Query: 1093 NHV 1095 V Sbjct: 972 TDV 974 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 68/121 (56%), Gaps = 6/121 (4%) Query: 104 GVLIVPVNTLMQRVCPHSFLHGHALV-MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEY 162 G+LI +M F++ L+ ++ G+ RD L + LDS+GY D V + GEY Sbjct: 91 GILISTPGGMMS-----PFMNSEGLLSLRIGECAGRDRLISWLDSSGYSRSDLVWKPGEY 145 Query: 163 ATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKA 222 A RG ++DLF S +P R+ FFDDEI+ +R+F + Q + +VEA ++ + T A Sbjct: 146 AVRGGIVDLFDPSSRMPLRVVFFDDEIEEMRLFSPEDQTSKCKVEAFSVWELGDRVTPSA 205 Query: 223 A 223 A Sbjct: 206 A 206 >UniRef50_B9KVH0 DEAD/DEAH box helicase domain protein n=2 Tax=Rhodobacter sphaeroides RepID=B9KVH0_RHOSK Length = 1059 Score = 510 bits (1314), Expect = e-142, Method: Compositional matrix adjust. Identities = 364/1040 (35%), Positives = 527/1040 (50%), Gaps = 89/1040 (8%) Query: 73 WETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKK 132 W+ LPYD SP D + R++ L + ++IV + L+QRV P + A ++ Sbjct: 54 WDCLPYDGASPTPDAMGRRMALLDAVRARDVRLVIVGPSGLLQRVPPVEAMRRFA--VRA 111 Query: 133 GQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 G+ L ALR+ AGY D++ E GE A R ++++F G++ P R+ D + + Sbjct: 112 GETLDLGALRSFAARAGYVEDDRIDEPGEIAFRAEVVEVFAAGADRPVRIGLQGDLVTGI 171 Query: 193 RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGT 252 R +D S R+LE+V I+LLP E PE + ++G Sbjct: 172 RRYDPVSLRSLEDVPGIDLLPVTEL-----------------------PESAF---AEGP 205 Query: 253 LPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMR 312 P G E+ P + L L + + V G L A + + Sbjct: 206 PPRGAEHLLPRAWPA-LAALPDHLGQGGISVTPGALAALRRARAQIEEAHRDRESLGEGE 264 Query: 313 PLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLD 372 LLP +L+L ++L L + L G++ +P A + + P Sbjct: 265 ALLP-DALYLGEEDLAGILAQAETLDLS-------------GWEPVPAFA---EDRRPRA 307 Query: 373 ALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--------- 423 AL +F+ G EGRR L LA + + R A+D + Sbjct: 308 ALARFVRGQIG--------EGRRVVL---LAATPRDLRALRRATGAADPAQDWQDARATP 356 Query: 424 ----YLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTI---NPDTLIRNLAE 476 ++ GFVD A++ D+LG R A + + PD L Sbjct: 357 QDVPAAILSTLARGFVDLPGRTAVVTARDVLGSRAAEDAAVAAVSAWQGTPDALAE---- 412 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 G VVH + G+GR G+ L G E + L YA+D L VPV I RY GA Sbjct: 413 ---GDLVVHEDRGLGRLQGLEPLP-GADGREAIRLGYASDQHLLVPVEEAGRIWRYGTGA 468 Query: 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596 + + L +L G AW+ R+K E + + A L+ +RAAK +F+ + Y+ F Sbjct: 469 DVS--LDRLNGSAWTNRRKKLDEGIAEAARALVSAAKERAAKSARSFEPPPDIYERFAGR 526 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 FPF + DQ +AI V D+ M+RLV GDVGFGKTE+A+RAA + QVA++ Sbjct: 527 FPFTLSADQRRAIAEVRDDLVAGRPMNRLVLGDVGFGKTEIALRAAAAVALSGAQVALVA 586 Query: 657 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS 716 P+T+LA+QH + FR RF + V + +SR +KE + +G I I++GTH LL Sbjct: 587 PSTVLARQHAETFRRRFEGFGVTVAHLSRLVPSKEAKAARDGLRDGSIRIVVGTHALLGK 646 Query: 717 DVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 776 V F DLGLLIVDEE RFG HK R++A+ A++ +LT+TATPIPRTL A+ G++DLS I Sbjct: 647 GVAFADLGLLIVDEEQRFGAAHKARLRALGADLHVLTMTATPIPRTLQTALVGLQDLSEI 706 Query: 777 ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 ATPPARR AV+T E D+ V+R+A+LRE RGGQ + + + I RL +L+PEA Sbjct: 707 ATPPARRRAVRTLTAEDDAAVLRQALLRERRRGGQSFVIVPRIAEIDATEARLRDLLPEA 766 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 ++ + HG + EL+R M +F R ++L+ T+I+ETG+D+P ANT+I+ + FGLAQL Sbjct: 767 QLRVAHGDLAPEELDRAMVEFAAGRGDILLATSIVETGLDVPRANTMIVMQPQLFGLAQL 826 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 HQLRGRVGR QAY +L+ + A +RL + + + LGAG A+A DL+ RGAG Sbjct: 827 HQLRGRVGRGARQAYCYLMHGPGDDLDEAALRRLGTLQAFDRLGAGAAIAAEDLDQRGAG 886 Query: 957 ELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 EL GE QSG + IG LY LL AV A + EP T+Q + + LP D+ Sbjct: 887 ELFGERQSGHVRLIGLPLYQHLLAQAVRAARG--EPP----TAQHVSLAMEGDGALPADY 940 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076 IP+ RL Y+R+A A E+ + E+ DRFG P A LL A +R A+ LGI Sbjct: 941 IPEAGLRLGLYRRLARAADPREVALLADEIEDRFGPPPAAAAGLLVAAEIRALARSLGIE 1000 Query: 1077 KLEGNEKGGVIEFAEKNHVN 1096 ++ G ++ A V Sbjct: 1001 RVSAGPSGVALDLAPDACVE 1020 >UniRef50_C7M0K8 Transcription-repair coupling factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0K8_ACIFD Length = 1131 Score = 510 bits (1313), Expect = e-142, Method: Compositional matrix adjust. Identities = 262/595 (44%), Positives = 380/595 (63%), Gaps = 6/595 (1%) Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G VVH +GV RY G+ G++ EYL L +A+ ++++P L L++ Y G E Sbjct: 464 GSFVVHEAYGVARYRGLVRQVVDGVSREYLELEFASADRIFLPFEHLALVAPYVGSEEPR 523 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599 L +L G W R +A ++VA EL+ +Y +R A G + D F + FP+ Sbjct: 524 --LTRLRGGDWQRQVHRARRAAQEVAQELVVLYQRRLAATGSSITPDPVLLSEFAERFPY 581 Query: 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 659 E T DQ + I VL+D+ +P+ MDRLVCGDVGFGKTE+A+RAAF +QV VL PTT Sbjct: 582 ELTRDQERTIAEVLADLAKPVPMDRLVCGDVGFGKTEIALRAAFAVASEGRQVLVLAPTT 641 Query: 660 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVK 719 LLA QH + FR+RF P+R+ M+SR +A+E I AE+A G++D+ I TH L + + Sbjct: 642 LLAAQHAEVFRERFEGTPIRVGMLSRLSTAREAASIRAELASGELDVCIATHAALGASTR 701 Query: 720 FKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 F LGLL++DEE RFGVRHKE++K VD+L L+ATPIPR+L +++ G+RDLS++ T Sbjct: 702 FARLGLLVIDEEQRFGVRHKEQLKEAFPGVDVLVLSATPIPRSLELSLVGIRDLSVLRTA 761 Query: 780 PARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 839 P R + T V +D VV EAI RE+LR GQV++++N V +I+ +A +A+LVPEAR+ Sbjct: 762 PVDRHPILTHVGPFDPAVVTEAIRRELLREGQVFFVHNRVRDIEASARLVADLVPEARVL 821 Query: 840 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899 + HGQ+ LER M F H +VLV TTI+E GID+ ANT+I++RA+ GLAQLHQL Sbjct: 822 VAHGQLPPAALERTMAQFWHGEADVLVATTIVENGIDLARANTLIVDRAEQLGLAQLHQL 881 Query: 900 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959 RGRVGRS QAYA+LLT ++ A +RL +A DLGAG+ +A DLE+RGAG +L Sbjct: 882 RGRVGRSGRQAYAYLLTSTTGGISDIALERLRTVAENTDLGAGYRIAMRDLELRGAGTVL 941 Query: 960 GEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPD 1019 G QSG + +G+ LY+ L+ V + EP+ ++ +++ + +LL +D++ + Sbjct: 942 GMRQSGHVSEVGYELYVRLVAEEVARMDGVEEPT----PDREVALDVPVSALLAEDYVAE 997 Query: 1020 VNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 TR+ Y+R+A A+++ E ++ EL DRFG P A L+ +A+ R++ LG Sbjct: 998 AETRMDLYRRLARARSQAEFDQFLEELRDRFGPPPAEALALVSLAKARRRLATLG 1052 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 81/156 (51%), Gaps = 3/156 (1%) Query: 67 VMNLADWETLPYDSFSPHQDIISSRLSTLYQL--PTMQRGVLIVPVNTLMQRVCPHSFLH 124 V L W+TLP++ P ++RL L + P + V++ V + ++ S Sbjct: 71 VALLPPWDTLPFERVVPSMGTTAARLRALASIVDPPDEGIVVVTTVRAALTKLV-ASAAR 129 Query: 125 GHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDF 184 L++ +G L RD L T L+ AGY QV GEYA RG+++D+ G P R+D Sbjct: 130 LERLIVARGDELVRDELITWLEDAGYVREPQVSAAGEYAVRGSIVDVADPGLASPVRIDL 189 Query: 185 FDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTD 220 F DE+D L FD +QR++ ++E + L PA E D Sbjct: 190 FGDEVDRLAFFDPTTQRSVGDLERVELFPAREVRID 225 >UniRef50_Q1J0Y7 Transcription factor CarD n=3 Tax=Deinococcus RepID=Q1J0Y7_DEIGD Length = 1041 Score = 509 bits (1312), Expect = e-142, Method: Compositional matrix adjust. Identities = 278/614 (45%), Positives = 385/614 (62%), Gaps = 29/614 (4%) Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 LH+G ++H EHG+G++ G+ T G+T +YL L Y A+L VP+ L ++ R+ G Sbjct: 366 LHVGDYLIHPEHGIGQFQGLETRTVLGVTRDYLNLEYRGGARLAVPIEQLPVLRRHPGTT 425 Query: 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596 ++ L W+RA++KA + +VAA LL YA R G +F E + Sbjct: 426 DDPPVLSSFDKKDWARAKEKARKNAEEVAARLLVQYAARQVTPGNSFPPQPEWDAQVERN 485 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 F FE T DQ A+ + D+ P DRL+ GDVGFGKTEVA+RAA V + KQVA+LV Sbjct: 486 FKFELTADQKTALKETMRDLEAPHPADRLISGDVGFGKTEVALRAAHRVVGHGKQVAMLV 545 Query: 657 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS 716 PTTLLA+QH F +RF + PVR+E +SRF K+ ILA++A GK+DI+IGTH+LL S Sbjct: 546 PTTLLAEQHTSTFVERFKDLPVRVEGLSRFTGDKQAKAILADLAAGKVDIIIGTHRLLSS 605 Query: 717 DVKFKDLGLLIVDEEHRFGVRHKERIKAMRA-----------------NVDILTLTATPI 759 DV+FKDLGL+IVDEEHRFGV KE+++A+R VD L L+ATPI Sbjct: 606 DVQFKDLGLIIVDEEHRFGVGQKEKLRALRGLPDVPKDGKLELPEGVKAVDTLALSATPI 665 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTL M+M G+RD+S I TPP R ++T + +D + VR+AIL EI RGG+V+Y+++ + Sbjct: 666 PRTLYMSMVGLRDMSSIQTPPKGRKPIQTVLAPFDPVTVRDAILNEIERGGKVFYIHDRI 725 Query: 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 +I + L LVPEARI + HG+M E ELE +M F F+VL+ TTI+ETG+DIP Sbjct: 726 ASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEQGAFDVLLSTTIVETGLDIPE 785 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 ANTI+IERAD GLAQL+QLRGRVGR AYA+L +P MT +AQ+RL AIA L+DL Sbjct: 786 ANTILIERADRLGLAQLYQLRGRVGRRQQTAYAYLF--YPPRMTENAQRRLWAIADLQDL 843 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 G+G LA D+EIRG G +LGEEQ G ++ + +Y E+L AV LK E L + Sbjct: 844 GSGHLLAEKDMEIRGVGNILGEEQHGHVQAVSIDVYTEMLAEAVARLKG------EPLEA 897 Query: 1000 QQTEVELRMP---SLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDP 1056 T V + +P L P+ F + R++ Y R++ A+T + ++ +L ++G Sbjct: 898 PPT-VSIDLPINARLTPEYFDGNEEERIATYGRLSEARTLQAVSRVERDLRKKYGPPTPE 956 Query: 1057 ARTLLDIARLRQQA 1070 + +D+A+LR A Sbjct: 957 VQNFIDLAKLRLTA 970 >UniRef50_C7NE08 Transcription-repair coupling factor n=4 Tax=Fusobacteriaceae RepID=C7NE08_LEPBD Length = 1068 Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust. Identities = 256/601 (42%), Positives = 401/601 (66%), Gaps = 16/601 (2%) Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G V+H+++GVG Y G+ T+E +YL + YA++ LY+PV L + +Y E Sbjct: 412 GDYVIHVQYGVGIYKGIQTMEER----DYLKIKYADEDILYIPVEKLDRLEKYVSNDTE- 466 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599 L +LG + R R+K E ++ AAEL+ I A+R ++ GF ++ D + F +FPF Sbjct: 467 PQLFRLGTRGFKRKRKKLEEDIQKFAAELIKIQARRQSQNGFVYQKDTVWQEEFEANFPF 526 Query: 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 659 E T DQ AIN V DM P MDR+VCGDVG+GKTEVAMRAAF A+DN KQV ++ PTT Sbjct: 527 EETEDQRNAINDVKKDMESPQIMDRIVCGDVGYGKTEVAMRAAFKAIDNGKQVVMVAPTT 586 Query: 660 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVK 719 +LA+QH++ F+ RF N+P+ IE +SR +K T IL + G ID++IGTH+LL DV+ Sbjct: 587 VLAEQHFERFKRRFENYPITIENLSRLTKSK-STDILKNLKNGIIDLVIGTHRLLSDDVQ 645 Query: 720 FKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 FK+LGLLI+DEE +FGV+ KE++K+ R +D+LTLTATPIPRTLN+AM G+R++SII TP Sbjct: 646 FKNLGLLIIDEEQKFGVKAKEKLKSQREKLDVLTLTATPIPRTLNLAMLGIREISIIDTP 705 Query: 780 PARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE-ARI 838 P RL + T + ++D +++ AILRE+ R GQV+Y+YNDV+N+++ + L E++P+ +I Sbjct: 706 PTNRLPIITEILDWDEEIIKMAILRELSRDGQVFYIYNDVKNMKEKLKELKEMLPDFVKI 765 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 +GQ+ +E++ + F + +F++L+ +TIIE GID+ ANTI+IE GL+Q++Q Sbjct: 766 EFINGQLPPKEIKDKLLRFENGQFDILIASTIIENGIDVGNANTILIENFTGLGLSQVYQ 825 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL-GAGFALATHDLEIRGAGE 957 L+GRVGRS+ Q Y +LL + +T +++ E++ +E + GF ++ DL+IRGAGE Sbjct: 826 LKGRVGRSNRQGYCYLL--KTRNITKQGRQKEESMLKVEGIKSGGFQISMEDLKIRGAGE 883 Query: 958 LLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFI 1017 +LG++Q G++ET G+ LY+++L + K +E++ E+ L +P+ +I Sbjct: 884 ILGDKQHGTIETFGYDLYIKMLNEEIRKQKGEFIEKIENV-----EIILDERGFIPETYI 938 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 + + RL+ YKR A +T++EL ++ E+ DRFG +P+ + + +L+ A+K I++ Sbjct: 939 -EKDERLNIYKRFAMLETDSELTDLLDEIRDRFGKIPEQMKKFILSIKLKLFAEKHKIQR 997 Query: 1078 L 1078 + Sbjct: 998 I 998 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 44/142 (30%), Positives = 73/142 (51%), Gaps = 16/142 (11%) Query: 84 HQDIISSRLSTLYQLPTMQRGVLIV----PVNTLMQRVCPHSFLHGHALVMKKGQRLSRD 139 +DI + L L ++ +L V ++ ++V SF + G+ S Sbjct: 107 KEDITGINIRLLDILKNQEKFILFVNLQITLDIFFEKVKFFSF--------EIGKEYSFS 158 Query: 140 ALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDS 199 + L GY + + G+Y+ RG +LD+FP E P RL+FF DE++S+RVFD+DS Sbjct: 159 KIVKFLVENGYETSYLIEKKGQYSRRGDILDIFPPDLENPVRLEFFGDELESIRVFDIDS 218 Query: 200 QRTLEEVEAI----NLLPAHEF 217 Q ++E++E I NLL + + Sbjct: 219 QISVEKMEEIKVFGNLLSGNNY 240 >UniRef50_B9K8D6 Transcription-repair coupling factor n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K8D6_THENN Length = 895 Score = 506 bits (1304), Expect = e-141, Method: Compositional matrix adjust. Identities = 269/609 (44%), Positives = 394/609 (64%), Gaps = 12/609 (1%) Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 ++ E+ G+ VVH EHG+ + GM L++ +YL L Y DA LYVPV + + RY Sbjct: 246 DIDEIEEGELVVHKEHGIAIFEGMIRLKSVLGERDYLKLKY-EDAVLYVPVEKIDRVHRY 304 Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 G + L +L W R +K E + EL+++Y +R G D E + Sbjct: 305 IGDPSQ-VKLDRLNRGRWKRTLKKVREDIEKRVRELVELYLKREEVRGTLLPGDPELEEK 363 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F ++FP+ TPDQ + I VL+D+ MDRL+CGD G GKTEVA+RAAF AV + KQV Sbjct: 364 FAETFPYIETPDQQKCIEEVLTDLSSEKPMDRLLCGDAGVGKTEVALRAAFRAVVSGKQV 423 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 AVLVPTT+LA+QHY+NF++R + VR+E++ R+ +E+ +IL + +G+ID++IGTH Sbjct: 424 AVLVPTTVLARQHYENFKERLEPFGVRVELLDSSRTLRERKEILEGLKKGEIDVVIGTHA 483 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 LL V+F DLGL+I+DEE +FGV KE+ K MR +V++L+L+ATPIPRTL+MA+SGM+D Sbjct: 484 LLNERVEFSDLGLVIIDEEQKFGVEQKEKFKKMRLSVNVLSLSATPIPRTLHMALSGMKD 543 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 832 LS+I PP R V ++ EY+ +V+ A++RE+ RGGQV Y++N VE + + E L + Sbjct: 544 LSVINAPPPGRKPVHVYIAEYNEELVKGAVVREVNRGGQVIYVHNRVEELPEVLENLKRM 603 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 PE RIA+ HG+M R +E+V+++F+ +VL+CTTIIE G+DIP ANT+I++ A +G Sbjct: 604 FPELRIAMAHGKMSRRVMEKVVHEFYSGNIDVLLCTTIIENGVDIPNANTLIVDDAHRYG 663 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 LAQL+QLRGRVGRS +A+A+ L +PK + A +RL + + G+G +A D+E+ Sbjct: 664 LAQLYQLRGRVGRSDRRAFAYFL--YPKGVPKSALERLRVLKAHTGPGSGLQIAMKDMEM 721 Query: 953 RGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS-- 1010 RG G++LG EQ G++ +IG LY E+L V +K ++E+ P Sbjct: 722 RGIGDVLGLEQHGNIISIGLKLYNEILRETVTKVKK-----KRVERKHTVQIEIENPPGR 776 Query: 1011 -LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQ 1069 +P+D+I + RL Y+R+ASA E E+EEI E+ DRFG P+ + LLD R+R + Sbjct: 777 FFIPEDYISNPVERLRMYRRLASASEEGEIEEILEEMRDRFGEPPEEVKLLLDYFRIRIR 836 Query: 1070 AQKLGIRKL 1078 A KLGIRK+ Sbjct: 837 ASKLGIRKI 845 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 31/140 (22%), Positives = 67/140 (47%), Gaps = 2/140 (1%) Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKG 133 + LP + ++ R+ L++L + ++ + L +++ L + +++ Sbjct: 25 DNLPLEDVPLSPEVKKKRMEILWRLLKGENLKIVTTLKALTEKIFSPESLKERTIEVRRS 84 Query: 134 QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193 R GY V GE++ RG +LD+F G + P R++ F + ++ +R Sbjct: 85 ASFYLSPER--FVEMGYERTFTVQMPGEFSIRGGILDIFSPGYDFPVRIELFGEVVEDIR 142 Query: 194 VFDVDSQRTLEEVEAINLLP 213 FDV +QR+ ++V+ + +LP Sbjct: 143 FFDVSTQRSFQKVDEVYILP 162 >UniRef50_B1LBI8 DEAD/DEAH box helicase domain protein n=5 Tax=Thermotogaceae RepID=B1LBI8_THESQ Length = 893 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 268/612 (43%), Positives = 403/612 (65%), Gaps = 14/612 (2%) Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGE--YLMLTYANDAKLYVPVSSLHL 528 I ++ E+ G VVH EHG+ + G+ L+ G+ GE YL L Y DA LYVP+ + Sbjct: 244 ILDVDEIEEGGLVVHREHGIAIFEGVVRLK--GVLGERDYLKLKY-EDAVLYVPIEKIDR 300 Query: 529 ISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDRE 588 + +Y G + L ++ W + +K E + EL+++Y +R +G + D E Sbjct: 301 VHKYIGDPSQ-VKLDRMNRGKWKQTLKKVREDIEKKIRELVELYMKRQEAQGLSLPGDPE 359 Query: 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 + F +SFP+ TPDQ Q+I V+SD+ MDRL+CGD G GKTEVA+RAAF AV + Sbjct: 360 LEEKFAESFPYIETPDQQQSIEEVMSDLASEKPMDRLLCGDAGVGKTEVALRAAFRAVVS 419 Query: 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 708 KQVAVLVPTT+LA+QHY+NF++R + V++E++ R+A+E+ +I+ ++ +G+IDI+I Sbjct: 420 GKQVAVLVPTTVLARQHYENFKERMETFGVKVELLDSSRTAREKKEIIEKLKKGEIDIII 479 Query: 709 GTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMS 768 GTH LL ++F DLGL+I+DEE +FGV KER K +R +V++LTL+ATPIPRTL+MA+S Sbjct: 480 GTHSLLNERIEFSDLGLVIIDEEQKFGVEQKERFKKLRLSVNVLTLSATPIPRTLHMALS 539 Query: 769 GMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAER 828 GM+D S+I +PP R V +V EY +V+ A++REI RGGQV Y++N VE + + E+ Sbjct: 540 GMKDFSVINSPPPGRKPVYVYVAEYSDDLVKGAVIREINRGGQVIYVHNRVEELPEVFEK 599 Query: 829 LAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 L + PE IA+ HG+M R +ER++++F+ +VL+CTTIIE G+DIP ANT+I++ A Sbjct: 600 LKRMFPELEIAVAHGKMSRRAMERIVHEFYRGNIDVLLCTTIIENGVDIPNANTLIVDDA 659 Query: 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATH 948 +GL+QL+QLRGRVGRS +A+A+ L +PK A +RL+ + S G+G +A Sbjct: 660 HRYGLSQLYQLRGRVGRSDRRAFAYFL--YPKGTPRSALERLKVLKSYTGFGSGLQIALK 717 Query: 949 DLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRM 1008 D+E+RG G++LG EQ G++ ++G LY E+L+ + K R +E S E+E Sbjct: 718 DMELRGVGDVLGLEQHGNVVSVGLKLYNEILKETITRFKERR---IEKKHSVNVEIE-NP 773 Query: 1009 PS--LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARL 1066 P +P+D++ + RL Y+R+AS+ E +LEEI E+ DRFG P+ + L+D RL Sbjct: 774 PGRFFIPEDYVQNPVERLRLYRRLASSLDEEDLEEILEEMRDRFGEPPEEVKLLVDYFRL 833 Query: 1067 RQQAQKLGIRKL 1078 R +A KLG++K+ Sbjct: 834 RIRASKLGVKKI 845 Score = 73.2 bits (178), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 44/181 (24%), Positives = 88/181 (48%), Gaps = 8/181 (4%) Query: 58 EISQFTDQMVMNLADWETLPYDSFSPHQDIISS------RLSTLYQLPTMQRGVLIVPVN 111 EI ++ N+ + P P +D++ S R+ L++L + + + Sbjct: 3 EILLLPNERFSNIEGYIFYPSRDVLPLEDVVLSPEIKGKRIEILWRLLNGENIKIATTLK 62 Query: 112 TLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDL 171 L ++V FL ++L++ + +L+ R L GY V V GE+A RG ++D+ Sbjct: 63 ALTEKVFSPDFLRENSLMITRSTKLTLSPER--LVEMGYERVFTVQNVGEFAIRGDIIDI 120 Query: 172 FPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQW 231 + G++ P R++ F DEI+ +R F VD+QR+ + + +LP + + ++ ++ Sbjct: 121 YSPGNDFPVRIELFGDEIEEIRFFKVDTQRSFQSADKTLILPFVDLYGESTLLDFVKTDV 180 Query: 232 R 232 R Sbjct: 181 R 181 >UniRef50_B2V9E1 DEAD/DEAH box helicase domain protein n=2 Tax=Sulfurihydrogenibium RepID=B2V9E1_SULSY Length = 938 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 250/626 (39%), Positives = 395/626 (63%), Gaps = 14/626 (2%) Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G ++H + G+G Y G+ T E G ++++L Y+ K+YV S LH + + Sbjct: 293 GDYIIHEDFGIGIYRGIETREIRGKVYDFMILEYSGGEKVYV--SYLHFDKIHKYKTDSI 350 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599 + K+GG +W ++K E ++++A LL+IY++R K D E F FPF Sbjct: 351 IQIDKIGGTSWRNLKKKVKESLKNIAKNLLEIYSKRQNIYRPPLKTDDELISKFEREFPF 410 Query: 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 659 TPDQ +AI + SD +P M+RL+CGDVGFGKTEVA+R F++V N Q +LVPTT Sbjct: 411 VETPDQIKAIKDIKSDFLKPKPMERLICGDVGFGKTEVAIRGIFISVINGYQALLLVPTT 470 Query: 660 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVK 719 +LA QHY ++R + + ++ +SR +S KE + EGKID+L+ THK+L +++ Sbjct: 471 VLAYQHYKKLKERLEPYGIIVKNLSRLKSKKENDNTIKAFEEGKIDVLVATHKILHTNLS 530 Query: 720 FKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 F L LL++DEEHRFGV+ KE+I+ +R +VD L LTATPIPRTLNMA+SG++D+S++ TP Sbjct: 531 FNKLELLVIDEEHRFGVKAKEKIRQIRESVDTLYLTATPIPRTLNMALSGLKDISVLNTP 590 Query: 780 PARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 839 P R +KT+V +D ++++AI EI R GQV+YL+N +E I++ A+ L LV +A++ Sbjct: 591 PEGRYEIKTYVSNFDEELIKKAIEFEIDRNGQVFYLHNRIETIKETADFLKNLVKKAKVD 650 Query: 840 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899 HG+M+ E+E+ + DF + NVL+ T+IIETGIDIPTANT+I++RAD FGLAQL+ L Sbjct: 651 FIHGKMKPSEIEKKIIDFLEGKTNVLISTSIIETGIDIPTANTLIVDRADLFGLAQLYHL 710 Query: 900 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959 RGRVGR + QAY +L+ PK +T DA++R++ + L G+G ++ D++IRG G +L Sbjct: 711 RGRVGRGNIQAYCYLIV--PKEITKDAKRRIDTLLKLTRPGSGLKVSIEDMQIRGPGNIL 768 Query: 960 GEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPD 1019 G EQSG ++++GF Y++LL+ A++ + +E + E+E+ +P DFI D Sbjct: 769 GVEQSGFIKSLGFDYYVKLLKEAINEERGEKE--------FEAEIEIDFDYYIPQDFIKD 820 Query: 1020 VNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLE 1079 RL+ Y ++ A+ E+E+++ L + + LP L I+ +++ +L I+KL Sbjct: 821 PTERLNIYMAVSKAEDYEEIEKLRKYLKEFYNDLPKAFDLYLVISEIKKLLSRLKIKKLH 880 Query: 1080 GNEKGGVIEFAEKNHVNPAWLIGLLQ 1105 ++ + + NP ++ L++ Sbjct: 881 MKSDLAYLQLS--DQTNPEVILKLIE 904 >UniRef50_A8F4U5 DEAD/DEAH box helicase domain protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F4U5_THELT Length = 939 Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust. Identities = 258/606 (42%), Positives = 387/606 (63%), Gaps = 9/606 (1%) Query: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGG 535 EL G+ VVH ++G+G Y G+ + T EY +L Y D+ +YVPV +H I +Y G Sbjct: 291 ELIEGEFVVHRDYGIGVYDGVKKISNPLGTREYFVLRY-EDSTVYVPVERIHKIHKYIGD 349 Query: 536 AEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCD 595 N + ++ W + ++ +R+ EL+ IY R G + D E + F + Sbjct: 350 TR-NVRIDRIHSGNWKKRIERVKRNLREKVEELIRIYDTRQKISGLSLPGDPELEKRFAE 408 Query: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655 FP+ T DQ AI VLSD+ MDRL+CGD G+GKTEVA+RAAF V + KQVAVL Sbjct: 409 FFPYAETDDQMTAIEEVLSDLANDKPMDRLLCGDAGYGKTEVALRAAFKCVVSGKQVAVL 468 Query: 656 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 715 VPTT+LA+QHY F R + + +++ ++ R S + +IL + GKID++IGTH LLQ Sbjct: 469 VPTTVLARQHYKIFTQRMSPFGIQVRLLDRSISTIMKKEILDGLFRGKIDVIIGTHALLQ 528 Query: 716 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 775 ++V+F DLGL+I+DEE FGV KE+ K +R NV++L+L+ATPIPRTL+MAM+GM+DLS+ Sbjct: 529 NNVRFSDLGLVIIDEEQSFGVEQKEKFKQLRTNVNVLSLSATPIPRTLHMAMTGMKDLSV 588 Query: 776 IATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE 835 I TPP RL V T+V +Y + +VR A+LREI RGGQV Y++N + +IQ + L ++PE Sbjct: 589 INTPPIGRLPVITYVAKYSNQLVRGAVLREINRGGQVIYVHNRIHDIQDVYQNLQHIIPE 648 Query: 836 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 895 A+I + HG+M R+L + F+ +V++CT+I+E+GIDIP ANTII++ + +GLAQ Sbjct: 649 AKIVLAHGKMGIRKLTEAVRSFYEHDSDVILCTSILESGIDIPNANTIIVDDSHRYGLAQ 708 Query: 896 LHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGA 955 L+QLRGRVGRS +A+A+ L H ++ A +RL+AI L G+GF LA D++IRG Sbjct: 709 LYQLRGRVGRSTKRAFAYFL--HDSEISEKALQRLQAIKQLTGSGSGFQLALRDMQIRGV 766 Query: 956 GELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS--LLP 1013 G + G EQ G++ +G +LY+E++ + +K + S + + E +P ++P Sbjct: 767 GSVFGFEQHGNINDVGLNLYLEIMNQQLKGIKEEKSESRKLFVDTEME---GIPGELVIP 823 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKL 1073 D++ R+ Y+R AS +T +E++ + EL DRFG LP+ A L+++ ++R A Sbjct: 824 PDYVESPLERMRIYRRFASCETVSEIDGMVEELHDRFGKLPNQALMLVELFKIRLLASSK 883 Query: 1074 GIRKLE 1079 IRK+E Sbjct: 884 HIRKIE 889 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 55/257 (21%), Positives = 115/257 (44%), Gaps = 42/257 (16%) Query: 41 PVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPT 100 PV+++ P A L +++ F + P++ + ++ R+ L++L Sbjct: 15 PVLIVVPTEYEAQLLSQKLNAFY------FPSHDVFPFEEVAVSFEVRCRRIEILWKLLN 68 Query: 101 MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHG 160 + V++ ++ + ++ L A +++KG+ + + T L+ GY V G Sbjct: 69 DPKIVIVCTLHAISRKTFSPVQLRQAARILRKGE-VFHNPEETMLN-LGYDRTYIVRTGG 126 Query: 161 EYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT- 219 E++ RG ++D F + P R++ FD I+++R FD +QR++ +VE LLP E+ Sbjct: 127 EFSVRGDVIDFFGPLYDNPVRVELFDQTIEAIRCFDASTQRSVFKVEEAFLLPVREYLCN 186 Query: 220 ------------------DKAAIELFRSQW--------------RDTFEVKRDPEHI-YQ 246 D + E+F +++ R+ E K+ +++ Sbjct: 187 EHLFDTVPAKLGSNSTILDYSDFEIFVAEFDRCQEEFAKREREAREMLEKKQIEDYVENS 246 Query: 247 QVSKGTLPAGIEYWQPL 263 Q+S +L IE+++PL Sbjct: 247 QISFSSLVKRIEFFKPL 263 >UniRef50_Q8RH90 Transcription-repair coupling factor n=12 Tax=Fusobacterium RepID=Q8RH90_FUSNN Length = 981 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 274/673 (40%), Positives = 422/673 (62%), Gaps = 23/673 (3%) Query: 443 LICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAG 502 ++ + ++ G RV R R + + + + E+ V+H GVG + G+ +E Sbjct: 306 ILTDREIKGIRVKRERVEKKAL-----RYKTVDEIKEQDYVIHENFGVGIFLGLENIEGQ 360 Query: 503 GITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVR 562 +YL + YA++ KL+VPV S++ I ++ ++ ++KLG + R + K +E + Sbjct: 361 ----DYLKIKYADEDKLFVPVDSINKIEKFINISDVIPEIYKLGRKGFKRKKAKLSEDIE 416 Query: 563 DVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAM 622 A E++ I A+R GF F D + F ++FPF TP Q++AI V DM M Sbjct: 417 IFAKEIIKIQAKRNLGNGFKFSKDTVMQEEFEETFPFTETPAQSKAIEDVKRDMESGKVM 476 Query: 623 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM 682 DRL+CGDVGFGKTEVA+RA F AV + KQV +LVPTT+LA+QHY+ F +RF N+PV IE+ Sbjct: 477 DRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVPTTVLAEQHYERFSERFKNYPVHIEI 536 Query: 683 ISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERI 742 +SR +S KEQT+ L + G D++IGTH+LL D+KFKD+GLLI+DEE +FGV+ KE++ Sbjct: 537 LSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDDIKFKDVGLLIIDEEQKFGVKAKEKL 596 Query: 743 KAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAI 802 K ++ ++D+LTLTATPIPRTLN+++ G+RDLS+I T P R + T + + ++E I Sbjct: 597 KKIKGDIDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIHTEYIDNNKNFIKEII 656 Query: 803 LREILRGGQVYYLYNDVENIQKAAERLAELVPE-ARIAIGHGQMRERELERVMNDFHHQR 861 L EI R GQV+Y++N V+ ++ + + EL+PE +++ HGQM R++++ + DF + Sbjct: 657 LSEISREGQVFYIFNSVKRMESKVKEIRELLPEYIKVSYIHGQMLPRDIKKNIQDFENGN 716 Query: 862 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA 921 +VLV TTIIE GIDI ANT+IIE + GL+Q++QLRGR+GRS ++Y ++LT K Sbjct: 717 VDVLVATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGRIGRSTKKSYCYMLTNENK- 775 Query: 922 MTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLEN 981 T +A+KR E+I ++L G LA D +IRG GE+LGE+Q G++ET G++LYM++L Sbjct: 776 -TKNAKKREESIREFDNL-TGIDLAMEDSKIRGVGEILGEKQHGAVETFGYNLYMKMLNE 833 Query: 982 AVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEE 1041 + LK E L+++ + P LPD++I + N ++ YKR + K +ELE Sbjct: 834 EILKLKGEAEEELDEVDVELN-----FPRFLPDNYI-EKNEKVKIYKRALALKNLDELEN 887 Query: 1042 IKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGG---VIEFAEKNHVNPA 1098 + EL DRFG + A+ D ++R A+ LGI ++ +++ +I F EK +N Sbjct: 888 LYNELEDRFGKIKSEAKGFFDFIKIRIIARDLGITTIKQDKENKDRILINFNEK-KINVD 946 Query: 1099 WLIGLLQKQPQHY 1111 +I LL + Y Sbjct: 947 KIIYLLSNKKIMY 959 Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/90 (30%), Positives = 55/90 (61%) Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 + +++ ++KG+ L+ L +L A + V + EY+ RG +LD+F + + P R Sbjct: 88 YSEANSIFIEKGKNLNIKDLEEKLIDADFEKTYMVAQRKEYSIRGDILDIFNINQDNPVR 147 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINL 211 ++FF +E+D + FD++SQ ++E+ ++I L Sbjct: 148 IEFFGNEVDRITYFDINSQLSIEKKDSIEL 177 >UniRef50_A7HNV8 DEAD/DEAH box helicase domain protein n=3 Tax=Thermotogaceae RepID=A7HNV8_FERNB Length = 923 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 264/616 (42%), Positives = 384/616 (62%), Gaps = 14/616 (2%) Query: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGG 535 EL +G VVH +G+ R+ + +E E+L+L +A D+ LYVP+ + LI +Y G Sbjct: 280 ELQVGDLVVHKRYGIARFTEIKKVETISGAKEFLVLNFA-DSTLYVPIERIDLIDKYIGD 338 Query: 536 AEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCD 595 + N L L WS+ KA + + ++L I+ R G A D E F Sbjct: 339 -DVNVKLDSLKKGTWSKKVSKAKRNIETIVRDMLLIHYIRNNTTGVALPGDSELESEFAK 397 Query: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655 +FP+ T DQ +AI V D+ MDRL+ GD G+GKTEVA+RA F A+ + KQ A+L Sbjct: 398 TFPYIETEDQLKAIQDVFEDLVSGKPMDRLLVGDAGYGKTEVAIRAIFRAIVSGKQAALL 457 Query: 656 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 715 PTT+LA+QHY+N +RF + +R+ ++ RF + KE+ +IL +V GKID+LIGTH +L Sbjct: 458 APTTVLARQHYENIAERFKPFGIRVALLDRFVTKKEREEILRDVKNGKIDLLIGTHSIL- 516 Query: 716 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 775 ++V F DLGL+++DEE +FGV KE+ K +R NV +L+++ATPIPRTL+MA+S +++ S Sbjct: 517 NNVVFADLGLVVIDEEQKFGVEQKEKFKKLRVNVHVLSMSATPIPRTLHMALSELKEFSE 576 Query: 776 IATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE 835 I TPP R V+ + +D +VR AILREI RGGQV Y++N V I ERL EL+PE Sbjct: 577 IKTPPFGRKEVQVHIGPFDDRIVRIAILREINRGGQVIYVHNRVNTIYDVYERLKELLPE 636 Query: 836 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 895 I IGHGQ + EL+R ++ F H + +VL+CTTI+E G+D+P ANT+I++ A +GLAQ Sbjct: 637 VSIVIGHGQQSKSELKRAIDMFFHGKADVLLCTTIVENGVDVPNANTLIVDDAHRYGLAQ 696 Query: 896 LHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGA 955 L+QLRGRVGRS ++A+ HPK + +RL AI S G+G +A D+EIRG Sbjct: 697 LYQLRGRVGRSDKISFAYFF--HPKHVNDKVLERLYAIKSYVGPGSGLKIAMRDMEIRGI 754 Query: 956 GELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS--LLP 1013 G + G EQ G + IG + Y+ELL+ + +E E ++ TE+E +P ++P Sbjct: 755 GAVFGLEQHGYINDIGLNYYLELLDETI------KESKGELISKVDTELE-GIPGSIIIP 807 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKL 1073 + +I D R+ FY+RIASA + +EL +IK+EL DRFG +P+ LL LR K+ Sbjct: 808 EAYIYDPFERMRFYRRIASATSIDELMDIKLELEDRFGKIPNSVENLLKYGMLRVLLWKM 867 Query: 1074 GIRKLEGNEKGGVIEF 1089 G++K + V+EF Sbjct: 868 GVKKATIGDSTIVVEF 883 Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/150 (30%), Positives = 79/150 (52%), Gaps = 8/150 (5%) Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 + D++ LPY++ P + S R+ LY L + I + L+ V S + Sbjct: 25 IPDYDVLPYENLRPSWYVRSRRIYALY-LAVQGKLKGIATLRALLHYVMKPSEFKKYIYH 83 Query: 130 MKKGQRLSR-DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE-LPYRLDFFDD 187 +K G LS + L +L GY V V E G ++ RG ++D +G + +P R++ + + Sbjct: 84 LKPGDELSSPEELFAKL---GYERVFNVREGGTFSIRGEIIDY--LGPDNMPVRIELYGN 138 Query: 188 EIDSLRVFDVDSQRTLEEVEAINLLPAHEF 217 I+ +R FD+ +QR+ E++E+ LLPA EF Sbjct: 139 LIEEIRRFDLKTQRSQEKLESALLLPAREF 168 >UniRef50_B2KBP0 DEAD/DEAH box helicase domain protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBP0_ELUMP Length = 1044 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 308/801 (38%), Positives = 446/801 (55%), Gaps = 80/801 (9%) Query: 343 HLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELL 402 H A NAN+ F DLA + +++L L+ +D VF + + G + L EL Sbjct: 239 HGENYALNANIKFNANMDLATKE-----INSLS--LQGYD-IAVFCL-NRGEEDRLKELF 289 Query: 403 ARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR 462 I L++ S I G+ A I S++L Sbjct: 290 NNHGI-------LNKVS-----FKIADITQGYYSVKDKKAYITSSEILD----------- 326 Query: 463 RTINPDTLIRNL----------AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLT 512 R + +L++N +L G +VH HG+GRY G+ TL+ + L++ Sbjct: 327 RNYHTSSLLKNFEIEGAKRVRFKDLVEGDYIVHQTHGIGRYRGLETLDKDTAPTDALVIE 386 Query: 513 YANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIY 572 Y +KL+VPV + +Y G + PL LGG AW +++ E + A E+L + Sbjct: 387 YRKGSKLFVPVQDFGKVQKYIGVKGKTPPLSHLGGVAWKEVKRRVKEAAQKDAEEILKME 446 Query: 573 AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632 A R+A D + F DSFP+ TPDQ+QAI+ +L D+ + MDR++ GDVGF Sbjct: 447 ALRSAANAKPLTGDAQLEAEFADSFPYIQTPDQSQAISEILDDLTRQKTMDRVLVGDVGF 506 Query: 633 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ 692 GKTEVAMRA + KQV VLVPTT+LA QHY F R A++PV +EM+SRF++ EQ Sbjct: 507 GKTEVAMRAVMRTALSSKQVLVLVPTTILAAQHYKTFVKRMASFPVSVEMLSRFQTKAEQ 566 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 I+ ++ +G +DI++GTH+LL D+ F +LGL+I+DEEHRFGV+ KE+IKA A V L Sbjct: 567 KIIVEKIRKGTVDIVVGTHRLLSKDISFANLGLVIIDEEHRFGVKQKEKIKAKTAGVHTL 626 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 L+ATPIPRTLN ++S +R+LS+I TPP R+ VKT V +++ + A+ +EI RGGQV Sbjct: 627 MLSATPIPRTLNQSLSSLRNLSLIETPPQGRMPVKTIVTPWNNDLAANAVRQEIGRGGQV 686 Query: 813 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 Y++YN V++++ E L LVPEARI + HGQM E LE+ + F++ +++L+ +TIIE Sbjct: 687 YFVYNRVQSMESRLELLKRLVPEARICMAHGQMNETALEKTLWAFYNHEYDILLASTIIE 746 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP-----HPKAM----- 922 +G+DI ANT+IIE A FGLAQL+QLRGR+GR +AY +L P PK Sbjct: 747 SGLDISNANTLIIESAQDFGLAQLYQLRGRIGRGDRKAYCYLFHPDWLFQKPKDNIEREN 806 Query: 923 -----------------TTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 T A+KRL A+ +LG+GF LA D+EIRGAGELLG Q G Sbjct: 807 NFEDLKAFLTKKKEADPTETAKKRLSALMEFSELGSGFKLALRDMEIRGAGELLGTRQHG 866 Query: 966 SMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLS 1025 +G SLY +++ V LK EP + + V + + + +P +++PD N RL Sbjct: 867 FANEVGLSLYCDMVAAEVKKLKG--EPVEK---KYRATVNVPVAAYIPPEYLPDDNERLR 921 Query: 1026 FYKRIASAKTENELEEIKV--ELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 +YK + ++ ELE+ K +LID G LP+ +TL + + +A +L IR +E + Sbjct: 922 YYKELLNS---GELEQKKTLNKLIDLAGPLPEEVKTLSKVILISNKAGELNIRHIEATKD 978 Query: 1084 GGVIEFAEKNHVNPAWLIGLL 1104 FA KN P IG L Sbjct: 979 FVEFYFA-KNFKMPEGAIGEL 998 Score = 62.4 bits (150), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 2/93 (2%) Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 +K+ + L R L L S GY+ + GE+A RG+++D+F G +LP RL F + + Sbjct: 112 IKQTEVLKRGDLIDYLHSCGYKREEFTENPGEFAVRGSVVDVFIHGQKLPARLYFAGNIV 171 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAH--EFPTD 220 +++ FDVD+Q T E I ++P H E P++ Sbjct: 172 ETISSFDVDTQNTKEYKNEITVIPLHFEELPSN 204 >UniRef50_A9BHZ6 DEAD/DEAH box helicase domain protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHZ6_PETMO Length = 974 Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust. Identities = 251/648 (38%), Positives = 405/648 (62%), Gaps = 14/648 (2%) Query: 454 VARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTY 513 + +++D R P + + +L+ G VVH ++G+G Y G+ +E E++ L Y Sbjct: 301 IKSKKEDKRLEYIP---LLDWEDLNDGDLVVHEDYGIGIYHGVNKVETLLGLREFVTLEY 357 Query: 514 ANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYA 573 ++++++YVPV L +S+Y G E + + L +W +QK E+++ EL IYA Sbjct: 358 SDNSRVYVPVGRLDKLSKYIGDPE-SVKISSLNSKSWKNTKQKVKEEIKQKIEELQKIYA 416 Query: 574 QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFG 633 R + G D E + F ++FP+ TPDQ ++I V+ D+ MDRL+ GD GFG Sbjct: 417 LRENQRGIQLFGDPELEEKFKETFPYVETPDQEKSIKEVMRDLESERPMDRLLSGDSGFG 476 Query: 634 KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT 693 KTEVAMRAAF V ++ QV +L PTT+LA+QHY+NF+ R ++ ++I +++R ++ KE+ Sbjct: 477 KTEVAMRAAFRTVVSNYQVLLLAPTTILAKQHYENFKQRMDSFGIKIALVTRHKTQKEKK 536 Query: 694 QILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILT 753 + + +G++DI+IGTH LL ++ K+LGL+IVDEE RFGV KE+ K + V+ L Sbjct: 537 DLFESIGKGQVDIVIGTHALLSDLLQVKNLGLVIVDEEQRFGVLQKEKFKKLSDGVNFLM 596 Query: 754 LTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVY 813 ++ATPIPRTL M++SG+RD+S I+TPP RL ++TF+ +Y +VR AILRE RGGQV Sbjct: 597 MSATPIPRTLYMSISGLRDISTISTPPVGRLPIQTFIGKYSDKLVRTAILREKSRGGQVI 656 Query: 814 YLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 873 Y++N V+ + + ++L L+PE +IA+ HG ++E + +ND + ++L+ TTIIE Sbjct: 657 YIHNRVQELNELHKKLRTLIPEIKIAMVHGGTPKKEFIKSINDLYDGNIDLLLSTTIIEN 716 Query: 874 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAI 933 GIDIP NT+I++ + +G++QL+Q++GRVGRS+ +A+ + L K +T +KRLEAI Sbjct: 717 GIDIPNVNTLILDDPERYGISQLYQIKGRVGRSNRRAFVYFL--FKKEVTPQTKKRLEAI 774 Query: 934 ASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPS 993 + G+G LA DLEIRG G++LG EQ G + IG+ LY E+L + +E Sbjct: 775 KQYNEPGSGLKLALRDLEIRGYGDILGIEQKGHINAIGYHLYHEMLNKILFEYGIKKE-- 832 Query: 994 LEDLTSQQTEVELRMPS---LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRF 1050 E++ QT E++ ++P+ +I + R+ Y+RI+ AKT +++E+I+ E+ D++ Sbjct: 833 -EEIQKPQTYTEIKGIKGSLVIPESYISNSIERMRIYRRISVAKTVDDVEDIRSEIRDKY 891 Query: 1051 GLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPA 1098 G P+ L A ++ +A GI+++E + I F +N VNP Sbjct: 892 GKFPEEVERLFQYALIKVKANMEGIKEIEIGD--TYISFKFENDVNPV 937 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 76/161 (47%), Gaps = 4/161 (2%) Query: 72 DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 D++ P+++ +I + R+ TL+ L T + ++ ++L++ P + + K Sbjct: 43 DFDIFPFENLDISPNIKAKRMKTLHALLTKENVTVLTTFSSLIRYTLPKNEFVSKKI--K 100 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 G D GY ++V GEY+ RG + D F E P R++ +D+ ID Sbjct: 101 VGDTFDLD--HNVPYHLGYNLSEEVTSPGEYSKRGFVRDFFIPIYEQPVRIELWDEVIDR 158 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWR 232 + FD SQR++E ++ + ++P E +E + + + Sbjct: 159 ISFFDSYSQRSIENLKEVEIIPGSEIMKFDHNLEFYEERLK 199 >UniRef50_D1B5L3 DEAD/DEAH box helicase domain protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5L3_THEAS Length = 994 Score = 482 bits (1240), Expect = e-134, Method: Compositional matrix adjust. Identities = 270/654 (41%), Positives = 393/654 (60%), Gaps = 20/654 (3%) Query: 415 LDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNL 474 ++ A+ G ++ G+A G +D + + E D+ G R D+LI Sbjct: 296 VEWAAGCGMEVIRGSASEGALDLSERVLYLSEVDVAGVRPPSSPAGKPPADVLDSLIS-- 353 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG 534 G +VH ++GV R+ G+ +E GG+ +Y+ L +A +L +P + + RYAG Sbjct: 354 -----GDLMVHEDYGVCRFLGIEMIEQGGVQQDYIALEFAQGKRLLMPTYRIARLYRYAG 408 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 E A L L WSR+ Q+A EK R+ A LL A+R + G AF + + Sbjct: 409 DPAE-AELDSLKRGRWSRSYQEAKEKAREAAERLLSAQARRHSARGIAFDPLEREMEELR 467 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 +FP+ T DQ + + +DM +P+ MDRL+ GDVGFGKTE+A+RAAF A + QV V Sbjct: 468 STFPYRETVDQVRCWEEIRADMERPVPMDRLLVGDVGFGKTELALRAAFKAAMSGYQVVV 527 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 + PTTLLA QH F R + +P+R+E + RF Q +IL + AEG++DILIGTH++L Sbjct: 528 VTPTTLLASQHLSTFASRLSPFPLRVEALYRFVPRSRQEEILNDFAEGRVDILIGTHRIL 587 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 DV+ ++LGL+++DEEHRFGV KER + D+L L+ATPIPRTL +A+ G +D+S Sbjct: 588 GDDVRARNLGLIVLDEEHRFGVMQKERWRERFPGADVLMLSATPIPRTLQLALGGYKDIS 647 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 ++ TPP R V T V + +V+ A+LRE+ RGGQV++++N ++++ +A R L+P Sbjct: 648 VMTTPPVDRRPVVTVVSPWQDELVKGAVLRELSRGGQVFWVHNRIQSMHRAFLRAKALLP 707 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 R+ + HG+MR+ ELE +M F R +VL+CTTIIE+G+D+P NTII+E A GLA Sbjct: 708 GVRVEMAHGRMRDSELESLMARFVEGRLDVLLCTTIIESGLDLPRVNTIIVEDAHRMGLA 767 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QL+QLRGRVGR QA+A L P A A +RLEAI SLE+LG+GF LA DL IRG Sbjct: 768 QLYQLRGRVGRRSDQAFALFLYPR-GAEAGRALERLEAIGSLEELGSGFHLAMMDLSIRG 826 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGRE-PSLEDLTSQQTEVELRMPSLLP 1013 GELLG Q G + ++ LY ++LE V LK G E P +E S PS +P Sbjct: 827 GGELLGTAQHGHVSSLSPELYFQMLEREVTRLKGGAELPPVEWGYS---------PS-IP 876 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 + ++ D R+ Y+R+ +EL++++ E++DRFG +P L+ ARLR Sbjct: 877 EWYVEDQPLRVRLYRRLFLPMDASELDQLRDEMVDRFGPVPHQVEELILAARLR 930 Score = 55.1 bits (131), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 34/95 (35%), Positives = 52/95 (54%), Gaps = 3/95 (3%) Query: 117 VCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176 V P GH ++KG R R +L + S GY V V G++A RGAL+DLFP G Sbjct: 89 VLPALSPSGH-FQLRKGDR-CRSSLIHWISSQGYERVPVVWAPGQWALRGALVDLFPPGD 146 Query: 177 ELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINL 211 R+ F DD ++ +RVF ++QR + +++ + Sbjct: 147 R-AIRVAFDDDLVEEIRVFSPETQRAVASLDSWEM 180 >UniRef50_C5F1R4 Transcription-repair coupling factor n=2 Tax=Helicobacter RepID=C5F1R4_9HELI Length = 1008 Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust. Identities = 238/601 (39%), Positives = 378/601 (62%), Gaps = 10/601 (1%) Query: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGG 535 EL +G VVH+++GV + G+ G T +++ L Y + KL +PV +L I RY Sbjct: 372 ELKVGDYVVHIDYGVALFNGIVQANIFGATRDFIELKYLGEDKLLLPVENLDRIDRYI-- 429 Query: 536 AEENAP-LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 A+ P L KLG +++R ++K EK+ +A ++ + A+R +G ++E+ +F Sbjct: 430 ADGGIPILDKLGKGSFARLKEKVKEKLFVIANGIIALAAKRELIDGIVLDTNKEEILIFQ 489 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 + F T DQ++AI + D+ MDRL+ GDVGFGKTEVAM A F++ + Q A+ Sbjct: 490 NQSGFIYTKDQSKAIEEIFKDLSSGRVMDRLLSGDVGFGKTEVAMNAMFVSYLSGYQSAI 549 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 + PTTLLA QHY + RF ++ ++I + R+ KE+ IL + +G I ++GTH LL Sbjct: 550 ITPTTLLAYQHYLTIKSRFESFGIKIARLDRYIGTKEKKAILEGLKDGTIHAVVGTHALL 609 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 +V FK+L L+++DEEH+FGV+ KERIK + N +L+++ATPIPRTLNMA+S ++ LS Sbjct: 610 --NVSFKNLALIVIDEEHKFGVKQKERIKEIAQNTHLLSMSATPIPRTLNMALSHIKGLS 667 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 + P++RL +TFV+EY +++E ILRE+ RGGQV+Y++N++ I + E + ++P Sbjct: 668 ELKEAPSQRLPTRTFVKEYSDSLLKEVILRELRRGGQVFYIHNNISTINQKKEEILTILP 727 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 +IAI H Q++ +E E ++ +F FN+L+CT+I+E+GI +P ANTI++ R+D FG+A Sbjct: 728 HLKIAILHSQIQAQESENIIMEFAKGNFNLLLCTSIVESGIHLPNANTILVGRSDCFGIA 787 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 LHQLRGRVGR + + + L ++T +AQKRL A+ LG+G ALA HDLEIRG Sbjct: 788 DLHQLRGRVGRGSKEGFCYFLIEDSSSITQEAQKRLLALEKNAYLGSGGALAYHDLEIRG 847 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPD 1014 G LLGE QSG ++ IG+SLY+ +LE A+ L + ++ +V+L + + L Sbjct: 848 GGNLLGEAQSGHIKNIGYSLYLRMLEEAIYQLSGNIKEEKANI-----DVKLSVTAFLNP 902 Query: 1015 DFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 + I RL Y+R++ + E+ + I+ E+ +RFG L + + + ++ +A+K G Sbjct: 903 ELIASEKLRLEIYRRLSRCEEESAVYGIESEIEERFGALDIYTKQFIALIVIKIKARKQG 962 Query: 1075 I 1075 I Sbjct: 963 I 963 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 5/188 (2%) Query: 29 TLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDII 88 T + + E++ ++ + D +A +L D ++ F L D + + +Q+ + Sbjct: 12 THLRDFQEKYQNGLICLTKDKNDAQKLAD-VASFLGIQSFVLEDLRAVFGEDLRSYQEEL 70 Query: 89 SSRLSTLYQLPTMQR-GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDS 147 L+TL T +L P+ TL+ + L G ++ G+ L + L Sbjct: 71 REILNTLKNFYTTNSPKILFSPLQTLLNPMPKLEALEGFSIAF--GESLELREFQETLLH 128 Query: 148 AGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTL-EEV 206 GY V+ V GE + RG ++DLF E P RL F +EI+S+R FDV +Q EE+ Sbjct: 129 FGYEFVELVEMSGEVSIRGDIIDLFLPNYENPIRLSLFCNEIESIRFFDVQTQLCFQEEI 188 Query: 207 EAINLLPA 214 E + +LPA Sbjct: 189 EKLEILPA 196 >UniRef50_C6B9D3 DEAD/DEAH box helicase domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6B9D3_RHILS Length = 1072 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 335/1071 (31%), Positives = 520/1071 (48%), Gaps = 71/1071 (6%) Query: 52 ALRLHDEISQ-FTDQMVMNLADWETLPYDSFSPHQDIISSRLSTL--YQLPTMQRGVLIV 108 A ++ D +S F D ++ L W+ LPYD P Q + R+ L + +P+ + + Sbjct: 27 ATKIADAVSALFPDIEIIVLPPWDCLPYDRVPPSQRCMGLRMDALRIWSMPSDAPRLFLT 86 Query: 109 PVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGAL 168 ++ +QR+ P + + L + G+ RDA + GY + GE A R + Sbjct: 87 SLDATLQRIPPATVIANSRLELVVGKAFDRDAFSDFIQRTGYVEEGVADDPGELAVREGV 146 Query: 169 LDLFPMGSELPYRLDFF-DDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELF 227 +D++P G+ P R+ DD + LR FD SQRT + + PA E + E F Sbjct: 147 IDIYPAGAPGPLRIVLSKDDSVLELRGFDRVSQRTESYFDKVIFGPASEAILTEGITEEF 206 Query: 228 RSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGD 287 DT V R +YQ +P +F + T+++ G Sbjct: 207 VPT-SDT--VMRLLLRLYQD---------------------MPTVFDFLGDATVVLAPGA 242 Query: 288 LETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTK 347 + + AR + + P S L +D W E + Sbjct: 243 ADQVERYLEIVDDARQSRKDFGEVEA---PSSRSLYLDR-----AEW-------ERQASS 287 Query: 348 AANANLGFQKLPDLAVQAQQKAPLDALRKFLETF---DGPVVFSVESEGRREALGELLAR 404 + L ++ DL +A P AL +++ VV S + G L Sbjct: 288 VSARELDLEEGGDLPTEASDTYPRTALINWMQDCLRHGLKVVISGKGNGSEALCRRLGQA 347 Query: 405 IKIAPQRIMRLDEA--SDRGRYLMIGAA-EHGFVDTVRNLALICESDLLGERVARRRQDS 461 APQ I + ++ G L + + GF+D +A++ +D + Sbjct: 348 TGTAPQSIDTWEAVLKAEPGTVLKLACELDQGFIDVTERIAVVAAADGIST--------- 398 Query: 462 RRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYV 521 N TL+ EL IG VVH +HGVG + ++ + + L Y + + V Sbjct: 399 --ASNCSTLLVE-PELRIGDVVVHEDHGVGVLRDLESIAVENVCRDAARLEYRDGDSVLV 455 Query: 522 PVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGF 581 P+ + RY G E L +L AW R+K A ++ A L+ + R A Sbjct: 456 PMEEFGKLWRY-GSEPEAVTLDRLHTAAWQNKREKIAADIQSTARHLIKLAKHRQASRAE 514 Query: 582 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 641 AF R + F FPF T DQA+AI +VLSD+ AM+RLVCGDVGFGKTE+A+RA Sbjct: 515 AFVPPRAGFSAFTRRFPFTETHDQAEAIRSVLSDLATGRAMNRLVCGDVGFGKTEIALRA 574 Query: 642 AFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE 701 A QV V+ PTT+L +QH+ F RFA V + M+SR +E ++ A +A Sbjct: 575 AAAVALAGGQVVVIAPTTVLTRQHFATFTRRFAGTGVSVGMLSRLLKPREAKKVKAALAV 634 Query: 702 GKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPR 761 G+I +++ T +L DV+F L L+IVDEEHRFG++ K + + ++ L ++ATPIPR Sbjct: 635 GEIGVIVTTQAILAKDVRFAHLALVIVDEEHRFGLKEKRAMNTLVPSLHTLAMSATPIPR 694 Query: 762 TLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVEN 821 TL AM G+ ++S++ TPP RR V+T + +D +R ++RE RGGQ + + +E+ Sbjct: 695 TLQSAMVGVHEVSLLTTPPFRRRPVRTSLSVFDHASMRTGLMREKRRGGQSFVVVPRIED 754 Query: 822 IQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 I L ++VPE + + HG M ++ + F +VL+ T IIE G+D+P AN Sbjct: 755 IDVVKTILRKIVPELSVKVAHGDMPAAAIDEAIVGFAEGDGDVLLATNIIENGLDVPRAN 814 Query: 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGA 941 T+ + +AD FGLAQLHQLRGRVGR Q A LLT + + ++ + + RL + + LGA Sbjct: 815 TMFVWQADRFGLAQLHQLRGRVGRGGAQGIATLLTENAE-LSDETRLRLSTLVENDRLGA 873 Query: 942 GFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQ 1001 G +++ DL++RG G++ GE+Q+G M+ IG LY +LL AV L+ ++P+ T + Sbjct: 874 GLSISLRDLDLRGGGDIAGEDQAGHMKVIGIGLYQKLLAGAVARLR--KQPA---GTPLR 928 Query: 1002 TEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLL 1061 V L + +P D++ D RL+ Y ++ A T +E+++++ E DRFG LP LL Sbjct: 929 AIVNLGVAGTIPSDYVSDPAVRLNLYAKLLRASTLSEMDDLEEEFEDRFGELPQDVLLLL 988 Query: 1062 DIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYR 1112 RL+ A +LGI KLE K + K PA +I L K+ R Sbjct: 989 RTTRLQLAAGRLGIAKLEAGPKALAMTLTPK---TPAKVIAALTKKAGAVR 1036 >UniRef50_Q9ZJ57 Transcription-repair-coupling factor n=19 Tax=Helicobacter RepID=MFD_HELPJ Length = 1001 Score = 466 bits (1200), Expect = e-129, Method: Compositional matrix adjust. Identities = 241/623 (38%), Positives = 385/623 (61%), Gaps = 16/623 (2%) Query: 456 RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAN 515 ++RQ S+ +N EL+ G+ VVH ++GVG ++ + G ++L + Y Sbjct: 349 KKRQKSKLALN---------ELNAGEWVVHDDYGVGVFSQLIQHSVLGSKRDFLEIAYLG 399 Query: 516 DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR 575 + KL +PV +LHLI+RY ++ +LG ++ + + K K+ ++A +++++ A+R Sbjct: 400 EDKLLLPVENLHLIARYVVQSDSVPVKDRLGKGSFLKLKAKVRAKLLEIAGKIIELAAER 459 Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 G + ++F FE T DQ +AI + D+ MDRL+ GDVGFGKT Sbjct: 460 NLILGKKMDTHLAELEIFKSHAGFEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKT 519 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 EVAM A F A N Q A++VPTTLLA QH++ + RF N+ V++ + R+ E++++ Sbjct: 520 EVAMHAIFCAFLNGFQSALVVPTTLLAHQHFETLKARFENFGVKVARLDRYIKTSEKSKL 579 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 L V G +D+LIGTH +L + KFK+LGL++VDEEH+FGV+ KE +K + +V L+++ Sbjct: 580 LKAVELGLVDVLIGTHAILGT--KFKNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMS 637 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYL 815 ATPIPRTLNMA+S ++ +S + TPP R +TF++E + +++E I RE+ R GQ++Y+ Sbjct: 638 ATPIPRTLNMALSQIKGISSLKTPPTDRKPSRTFLKEKNDELLKEIIYRELRRNGQIFYI 697 Query: 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 +N + +I K +L +L+P+ +IAI H Q+ E E +M +F + VL+CT+I+E+GI Sbjct: 698 HNHIASISKVKTKLEDLIPKLKIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGI 757 Query: 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 +P ANTIII+ A +FGLA LHQLRGRVGR + + + L K++ A KRL A+ Sbjct: 758 HLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEK 817 Query: 936 LEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLE 995 LG+G ++A HDLEIRG G LLG++QSG ++ IG++LY +LE+A+ L G++ Sbjct: 818 NSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELSGGKKR--- 874 Query: 996 DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPD 1055 + E++L + + L + I + RL Y+R++ + +E+ +I E+ DRFG + D Sbjct: 875 --LEKSVEIQLGVSAFLNPELIASDSLRLDLYRRLSLCENVDEVGQIHEEIEDRFGKMDD 932 Query: 1056 PARTLLDIARLRQQAQKLGIRKL 1078 + L I L+ A +LGI KL Sbjct: 933 LSAQFLQIITLKILANQLGILKL 955 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Query: 92 LSTLYQ-LPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGY 150 L YQ L Q ++I P++ L+ + L + + + L L+ +L GY Sbjct: 71 LREFYQALENKQETIIIAPISALLHPLPKKELLESFKITLLEKYNLKD--LKDKLFYYGY 128 Query: 151 RHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEE 205 +D V GE + RG ++D++ S+ YRL FFD E +S++ D +Q +L+E Sbjct: 129 EILDLVEVEGEASFRGDIVDIYIPNSK-AYRLSFFDAECESIKELDPATQMSLKE 182 >UniRef50_D1B3F9 Transcription-repair coupling factor n=14 Tax=Campylobacterales RepID=D1B3F9_SULD5 Length = 989 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 236/594 (39%), Positives = 376/594 (63%), Gaps = 7/594 (1%) Query: 474 LAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYA 533 L EL G VVH +G+G + G+T + G T +++++ Y D KL +PV +LH+I RY Sbjct: 351 LDELKNGDYVVHENYGIGIFKGLTQVSVLGATKDFVLIEYLGDDKLLLPVENLHVIDRYI 410 Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 G + + +LG ++ + + K E++ ++A+E++ I A+R EG + E+ Q F Sbjct: 411 GESGGLVSVDRLGKGSFQKLKAKTKERLLEIASEIIAIAAKREMVEGLNIAIENEELQAF 470 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 F T DQ + I+ +L D MDRL+ GDVGFGKTEVAM A F V Q Sbjct: 471 QADAGFMYTEDQKRVIDEILVDFKSGKMMDRLLSGDVGFGKTEVAMNAIFATVQKGFQAL 530 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 ++ PTTLL QH+ + RFA + +++ + RF +A ++ IL E+ G + + +GTH L Sbjct: 531 LIAPTTLLCAQHFKSLSHRFAKYNIKVAQLDRFTTAAQKQLILKELKSGALQVCVGTHSL 590 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 DV+ + L++VDEEH+FGV+ KE++K R NV IL+++ATPIPR+LNMA+S ++ Sbjct: 591 F--DVELFNPALVVVDEEHKFGVKQKEKLKNFRENVHILSMSATPIPRSLNMALSSIKQY 648 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 S + TPP+ R V+TFV+EYD V++EAILRE+ RGGQ+++++N + I+ + L ++ Sbjct: 649 SQLLTPPSDREDVRTFVKEYDEKVIKEAILREMRRGGQIFFVHNRIATIEAKRKELLSMM 708 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 P RI H ++ E+ M F + +++L+ T+IIE+GI IP NTI+I+ ADHFG+ Sbjct: 709 PNLRILTLHSEISASVTEKEMLRFEEKAYDLLLSTSIIESGIHIPNVNTIMIDAADHFGM 768 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 A LHQLRGRVGRS Q + + L ++++ A+KRL A+ S LG+G LA HDLEIR Sbjct: 769 ADLHQLRGRVGRSKRQGFCYFLVKEKESLSESAKKRLIALESNSYLGSGSILAYHDLEIR 828 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLP 1013 G G L+GE QSG ++ IG++LY+ +LE+A++AL G+ P + S++ +++L + + + Sbjct: 829 GGGNLVGEAQSGHLKNIGYALYLRMLEDAINAL-MGKTP----VASREVDMKLSISAFIS 883 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 D +I + RL Y+R++ + +E+ EI+ E++DRFG + P + L + ++ Sbjct: 884 DSYIAEDRVRLELYRRLSRCGSIHEVLEIEEEMLDRFGKMDVPTKQFLQLIEIK 937 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 98/209 (46%), Gaps = 27/209 (12%) Query: 7 YTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM 66 Y E LLG + G A L +E+A + G + PD++ D++ F ++M Sbjct: 7 YEFLQTKNECELLG-VKGDKEAFLASEVA-LYCGKKSYVLPDLRA--NYGDDLLSFHEEM 62 Query: 67 VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGH 126 V L +D+ S + +LI P+ TL+ + P L Sbjct: 63 VELLRVLYAFYHDASS--------------------KKILISPLRTLLTPL-PKVELFS- 100 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 L + G RL + R Q+ GY VD V GE + RG ++D+FP S+ R+ FD Sbjct: 101 TLTLAFGMRLHLERFREQMFYWGYLAVDVVQGKGEISIRGDIIDIFPPNSDYALRISLFD 160 Query: 187 DEIDSLRVFDVDSQRTL-EEVEAINLLPA 214 DE++S+R F+ +SQ++L +E+E L PA Sbjct: 161 DEVESIRFFECESQKSLKDELEEWLLFPA 189 >UniRef50_C3XNZ2 Transcription-repair coupling factor n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XNZ2_9HELI Length = 1011 Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust. Identities = 246/620 (39%), Positives = 394/620 (63%), Gaps = 9/620 (1%) Query: 474 LAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYA 533 L EL +G VVH ++G+ ++G+T G T +++ L Y + KL +PV +L I RY Sbjct: 371 LDELKVGDYVVHCDYGIAIFSGITQANIFGATRDFIALRYLGEDKLLLPVENLDRIDRYI 430 Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 + L KLG ++++ ++K EK+ +A ++ + A+R +G F +E+ LF Sbjct: 431 ADSGGIPILDKLGKGSFAKLKEKVKEKLFVIANAIIALAAKRELIDGVVFDVQKEEILLF 490 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 + F T DQ QA+N + D+ MDRL+ GDVGFGKTEVAM A F+A + Q A Sbjct: 491 QNKSGFHYTEDQTQAVNEIFKDLSSGKVMDRLLSGDVGFGKTEVAMNAMFVAFLSGFQSA 550 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 ++VPTTLLA QH++ ++RF + ++ + R+ S KE+ QIL ++ G+++ ++GTH L Sbjct: 551 MIVPTTLLAYQHFNTLKERFVPFGFKLARLDRYVSTKEKKQILRDLKNGELNAVVGTHAL 610 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 L ++ FK+L L++VDEEH+FGV+ KE+IK + N+ +L+++ATPIPRTLNMA+S ++ L Sbjct: 611 LSAE--FKNLALMVVDEEHKFGVKQKEKIKDLSQNIHLLSMSATPIPRTLNMALSHIKGL 668 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 S + TPP+ R A +TFV++ D +++E I+RE+ RGGQ++Y++N + I++ E + ++ Sbjct: 669 SELKTPPSERQATRTFVKQLDDTLLKEIIMREMRRGGQMFYIHNSIATIRQKKEEILRVL 728 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 P +IAI H Q+ +E E ++ +F + +L+CT+I+E+GI +P ANTI+++ A++FG+ Sbjct: 729 PTLKIAILHSQIPAQEAEDIVLEFAKGTYQILLCTSIVESGIHLPNANTILVDNANYFGI 788 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 A LHQLRGRVGR + + + +LL +++T DA+KRL A+ LG+G ALA HDLEIR Sbjct: 789 ADLHQLRGRVGRGNKEGFCYLLIEDFESITEDAKKRLLALEKNSFLGSGGALAYHDLEIR 848 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLP 1013 G G LLGE QSG ++ IG+SLY+ +LE+A+ AL +G E EV+L + + L Sbjct: 849 GGGNLLGEAQSGHIKNIGYSLYLRMLEDAIFAL-SGNVAQKE----ANVEVKLSVTAFLN 903 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKL 1073 + I RL Y+R++ + E + I+ E+ +RFG L R LD+ R++ A+ Sbjct: 904 AELIESERLRLEIYRRLSKCQEEKAVFAIEGEIEERFGRLDIYTRQFLDLIRIKIVARNC 963 Query: 1074 GIRKLEGNEKGGVIEFAEKN 1093 GI + ++ I F N Sbjct: 964 GIASIMNYQQN--ISFTSNN 981 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 11/188 (5%) Query: 32 AEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSR 91 E R ++++ D ++AL D +++F D+ D +Q+ +S+ Sbjct: 14 GEFKTRFKNGLIILCEDGRSALSCGD-VAKFLGFKTFVFPDFRAAFGDDLRSYQEELSAL 72 Query: 92 LSTLYQLPTMQ-RGVLIVPVNTLMQRVCPHSFLHGHALV---MKKGQRLSRDALRTQLDS 147 TL + T + +L P+ TL+ H + +L+ +K G L+ + + L Sbjct: 73 FWTLREFYTFKGEKILFSPLYTLL-----HPLPNAESLLTMQLKVGDVLNLKSFKENLLY 127 Query: 148 AGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR-TLEEV 206 GY VD V GE + RG ++D+ + PYR+ FDDEI+S+R FD +Q + E + Sbjct: 128 FGYEFVDLVELGGEVSMRGDIIDILTPNEQNPYRITLFDDEIESVRYFDSQTQLCSKENL 187 Query: 207 EAINLLPA 214 +++ + PA Sbjct: 188 DSLEIPPA 195 >UniRef50_A8ERW1 Transcription-repair coupling factor n=13 Tax=Epsilonproteobacteria RepID=A8ERW1_ARCB4 Length = 995 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 230/607 (37%), Positives = 380/607 (62%), Gaps = 7/607 (1%) Query: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGG 535 EL VVH ++G+G+Y G+ + G +++++ Y + KL VPV +L LI RY Sbjct: 361 ELQYNDFVVHEKYGIGQYKGIEPVTVMGAKRDFVIIQYQGEDKLLVPVENLDLIDRYVAD 420 Query: 536 AEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCD 595 A + KLG ++++ ++K +K+ +A +++ + A R G D++ + F Sbjct: 421 GNSYAVVDKLGKGSFAKLKEKVKDKLFAIANDIIKLAAARELVNGIKINTDKKVLEDFQK 480 Query: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655 S FE T DQ ++I +L D+ MDRL+ GDVGFGKTEVAM A + + Q + Sbjct: 481 SAGFEYTKDQKRSIKEILDDLSSGRVMDRLLSGDVGFGKTEVAMNALLAVILDGYQTIFV 540 Query: 656 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 715 PTTLLA QHY + + R ++ +R+ + +AKE+T I + I ++IGTH LL Sbjct: 541 CPTTLLATQHYHSIQKRLESFGIRVAKLDGKTTAKEKTSIKKGLENADIKLVIGTHSLL- 599 Query: 716 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 775 D+K +L L+I+DEEH+FGV+ KE++K +R +V I +++ATPIPRTLN+A+S ++ +S Sbjct: 600 -DIKTSNLALVIIDEEHKFGVKQKEKLKQLREDVHIFSMSATPIPRTLNLALSKLKGMSS 658 Query: 776 IATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE 835 + TPP+ RL V+T+V+EY +++E ILRE RGGQ++Y++N++ +I+ + + +VP Sbjct: 659 LLTPPSERLGVRTYVKEYSEKLIKEIILREKRRGGQLFYVHNNIASIEAKKKDIEAIVPN 718 Query: 836 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 895 +I I H Q++ + E+++ F ++ F++L+ T+I+E+GI +P AN+III+ AD FG+A Sbjct: 719 IKIDIIHSQIKPEQAEKIIEAFENKEFDILLATSIVESGIHLPNANSIIIDGADRFGIAD 778 Query: 896 LHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGA 955 LHQLRGRVGRS+ + Y + + K++T DA KRL A+ S LG+G ALA DLEIRG Sbjct: 779 LHQLRGRVGRSNKEGYCYYVVEDKKSITDDAVKRLVALESNSYLGSGTALAHQDLEIRGG 838 Query: 956 GELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDD 1015 G ++GE QSG ++ IG+ LY+++LE+ + L +G E + + +++L + + + D+ Sbjct: 839 GNIIGEAQSGHIKQIGYGLYLKMLEDTLATL-SGDEKN----EKKTVDIKLAISAYISDE 893 Query: 1016 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 +I + RL Y+R++ A E+ I+ E+ DRFG + +++ ++ A KLGI Sbjct: 894 YISEDRVRLELYRRLSKASDIQEVYSIEEEMEDRFGKPDIVTKQFIELIIIKILALKLGI 953 Query: 1076 RKLEGNE 1082 + + E Sbjct: 954 QTISSYE 960 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/156 (33%), Positives = 82/156 (52%), Gaps = 13/156 (8%) Query: 80 SFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLM----QRVCPHSFLHGHALVMKKGQR 135 SFS I+ L Y Q +LI P+ T+ + C SF A R Sbjct: 61 SFSEELHEITKTLGDFYSYKK-QDKILISPIRTISYPLPKEKCFESFTINFA------DR 113 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 L+ + L+++L + GY VD V GE + RG +LD+ P+GS+ YR+ FDDE++S+R F Sbjct: 114 LNLEELKSKLYNWGYYFVDIVTSEGEVSLRGDILDICPLGSDFGYRVSLFDDEVESIRKF 173 Query: 196 DVDSQRTL-EEVEAINLLPAHEFPTDKAAIELFRSQ 230 D++ Q++ EE+E+ ++ PA D+A E Q Sbjct: 174 DIEDQKSSKEEIESFSINPAF-LALDEATFEEINEQ 208 >UniRef50_Q1YKV9 Putative transcription-repair coupling factor n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YKV9_MOBAS Length = 1128 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 337/1005 (33%), Positives = 503/1005 (50%), Gaps = 75/1005 (7%) Query: 105 VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYAT 164 VLI L+++V P S G ++ G+ L + AL+ +L GY D+V E GE A Sbjct: 116 VLITTPAALIRKVPPKSVWEGLHSEIRVGETLDQTALQAKLQHLGYWLDDRVDEPGEAAF 175 Query: 165 RGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAI 224 RG +L++FP + P R++ D + ++R +D SQR++ E + + + P A Sbjct: 176 RGKVLEIFPAAAPRPCRIEHEDGVVTAIRSYDPVSQRSVSETDCLIVDP---------AS 226 Query: 225 ELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPP--LFSYFPANTLL 282 E+ + D Q++ TL G + + P +F Y ++ Sbjct: 227 EIVGAD---------DGATGRQEIDGETLQTGAPDSERFLCRQYERPETVFDYLQDADMV 277 Query: 283 VNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTE 342 + TG + E F D L R + DP R + L + + W L E Sbjct: 278 LETGAEIRADEVF--DALQRIDAD--DPHRHAVLADHL---------DRETWD--TLVAE 322 Query: 343 HLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLE---------TFDGPVVFSVESEG 393 + + + + V A ++ P AL F+E GP + S Sbjct: 323 RVTALVDDVEADYS----VPVFATERQPYKALASFVEPLRDEGYRIVLAGPDGRVMRSAA 378 Query: 394 RREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGER 453 R+ G L + + +A+ L GFV +A+I +L G++ Sbjct: 379 RKA--GTALDGVFEPAANWDAICDAAPSSLLLFDAPITQGFVAAESGVAVISLRNLEGQK 436 Query: 454 VARRRQDSRRTINP--DTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLE----AGGITGE 507 A P DT + G VVH+EHGV G+ ++ G GE Sbjct: 437 AAAAVAGPSDGFAPQVDTFM-------TGDRVVHIEHGVAVLDGLVPIDPNGNGGDPEGE 489 Query: 508 YLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAE 567 L L Y ND L VP+S + + R GGA + L L G W + R + + A Sbjct: 490 ALSLRYRNDETLLVPMSDIGAVWR-CGGASTDVTLDDLKGRTWQKRRDEIFGAISVTADR 548 Query: 568 LLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 +++ ++A + DR ++ FC F +E T DQ A VL D+ M+RLVC Sbjct: 549 MVERLTEKAEAKAPKIVPDRVSFERFCARFAYELTADQNNACLDVLDDLASGRPMERLVC 608 Query: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 GDVG+GKTEVA+RAA AV + +QVAV+ PTT+LAQQH+ F RF V I +SR Sbjct: 609 GDVGYGKTEVALRAAAAAVFSGRQVAVIAPTTVLAQQHFREFSARFGAQGVEIVRLSRLV 668 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 E A + +G I++GTH +L DV F DL L+I+DEE RFG K ++ + Sbjct: 669 GKDEADAAKAAMQDGTAKIVVGTHAILSGDVAFDDLALVIIDEEQRFGSEQKAAMRTLAD 728 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL 807 V ILT+TATPIPRTL G+ DLSIIATPP RR VKT V +D VR+A+ E Sbjct: 729 GVHILTMTATPIPRTLQSGFVGLSDLSIIATPPNRRSPVKTRVGPFDDAAVRDALTAERA 788 Query: 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 RGGQ + + +E+++ A +L ELVPE HG+M+ E+E M F H +VL+ Sbjct: 789 RGGQSFVVCPRIEDLEPMAAKLQELVPEQTTVTLHGKMKPDEVEDAMLAFAHGEHDVLLA 848 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 T I+E+G+D+ ANT+++ AD FGLA+LHQLRGRVGR + + L T + + A+ Sbjct: 849 TAIVESGLDVANANTMVVCHADRFGLAELHQLRGRVGRGARRGHVLLTTEADRELGEHAR 908 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK 987 RLEA+ LGAGF +A DL++RG GELLG+EQ+G ++TIG LY ++LE AV AL Sbjct: 909 SRLEALEEFSTLGAGFDIAARDLDLRGTGELLGDEQAGHVQTIGIGLYRKILERAV-ALA 967 Query: 988 AGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLS---FYKRIASAKTENELEEIKV 1044 G +P +D+ + + L +P+ +P D++P+ + R+ +R++ A T L+ ++V Sbjct: 968 QG-QPEPDDV---RPVIALGLPATIPADYVPEPDMRIELALLLERVSDAAT---LDALRV 1020 Query: 1045 ELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEF 1089 E+ DRFG +P T +A LR + + G+ KL+ K + F Sbjct: 1021 EIEDRFGPMPATLLTHFRLAELRLRCRAAGVAKLDHGPKATALGF 1065 >UniRef50_Q4HTG2 Transcription-repair coupling factor n=2 Tax=Campylobacter RepID=Q4HTG2_CAMUP Length = 974 Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust. Identities = 232/594 (39%), Positives = 369/594 (62%), Gaps = 7/594 (1%) Query: 474 LAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYA 533 L EL IG +VH ++GVG++ G+ L G E++ L+Y N+ KL +PV +L++I +Y Sbjct: 338 LDELKIGDFIVHEDYGVGKFLGLELLNISGAKKEFVALSYQNNDKLLLPVENLYMIDKYL 397 Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 G L +LG + + ++K K+ +A++++ + A+RA + D E F Sbjct: 398 GVGGAIPLLDRLGKSTFIKLKEKLKTKLLALASQIIAMAAKRALIKPKKIMIDLEAQADF 457 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 F T DQ +A +L D MDRL+ GDVGFGKTEVAM A F + + V Sbjct: 458 VQRAGFSYTEDQVKACEDILEDFKSSRVMDRLLSGDVGFGKTEVAMNAIFPVLKSGFSVF 517 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 VPTTLL+ QHY + + RF + +++ + RF SAKE+ +L E+ +++GTH L Sbjct: 518 FFVPTTLLSHQHYQSLKKRFKEFDLKVFKLDRFTSAKEKKYLLEELKNNTPCVVVGTHAL 577 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 L V+ +++ L+I+DEEH+FGV+ KE++K N +L+++ATPIPR+LN A+S ++ Sbjct: 578 LS--VECENVALVIIDEEHKFGVKQKEKLKEFSQNSHLLSMSATPIPRSLNQALSSIKSY 635 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 SI+ TPP RL +++FVRE + +++EAILRE+ RGGQ++Y++N + +I++ + L L Sbjct: 636 SILQTPPEDRLDIRSFVRESEDALLKEAILRELRRGGQIFYIHNHIASIKQCEKHLKSLF 695 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 + RI I H ++ + E M F ++ +++L+CT+I+E+GID+P NTIIIE+++ FG+ Sbjct: 696 KDLRILILHSKIDAKTTEEEMLKFENKAYDLLLCTSIVESGIDLPNVNTIIIEKSERFGM 755 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 A LHQLRGRVGRS+ Q Y + L ++ A KRL ++ S LGAG LA HDLEIR Sbjct: 756 ADLHQLRGRVGRSNKQGYCYFLVEDKANLSEAALKRLVSLESNSFLGAGSLLAYHDLEIR 815 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLP 1013 G G LLG +QSG +E IG+SLY+++LE+ ++AL E + + E++L + + L Sbjct: 816 GGGNLLGLDQSGHIEQIGYSLYLKMLEDELNALSKN-----ESVCENKLELKLNINAFLN 870 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 + I + + RL Y+R++ + + L EI+ E+ DRFG L + L + R++ Sbjct: 871 PELINEDSLRLELYRRLSKCEDSSRLYEIEAEIEDRFGKLDLYTKQFLALIRIK 924 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 42/137 (30%), Positives = 80/137 (58%), Gaps = 9/137 (6%) Query: 105 VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYAT 164 +LI P+ ++++++ L G ++ K + + + L+ + GY VD V + GE + Sbjct: 79 ILISPLASVLKKLPSKRHLQG--FILDKTKPFNVELLKDEFLRLGYEFVDMVQDKGELSL 136 Query: 165 RGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTL-EEVEAINLLP--AHEFPTDK 221 RG +LD+F + E P R+ FF +EI+S+R FD+D+Q+++ E++ + + P +H K Sbjct: 137 RGEVLDIFCINEENPVRILFFGEEIESIRYFDLDTQKSIPSELDKLEICPFLSH---FSK 193 Query: 222 AAIELFRSQWRDTFEVK 238 +A E F + ++FE K Sbjct: 194 SAYEEFEEKL-ESFESK 209 >UniRef50_A4YQE5 Putative transcription repair coupling factor n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YQE5_BRASO Length = 1091 Score = 447 bits (1149), Expect = e-123, Method: Compositional matrix adjust. Identities = 343/1057 (32%), Positives = 515/1057 (48%), Gaps = 105/1057 (9%) Query: 42 VVLIAPDMQNALRLHDEISQF-TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPT 100 VV ++ D A R+ + D V+ L ++T+P+D +P +++ R L +L Sbjct: 53 VVFLSSDEARAERIAAVLHAMDPDCGVLVLPRFDTVPFDDAAPSRELSGRRAHVLRRLAE 112 Query: 101 MQR-GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEH 159 R +LI V ++ V P +L +K GQ + + R L GY + + Sbjct: 113 HARHPLLISTVEAVLPLVPPQRCWTAASLHLKAGQPIDLEGFRNSLAKLGYATDEPPDDP 172 Query: 160 GEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT 219 G G +LFP G+ P R++ D I + FD+ Q + E + + P E Sbjct: 173 GSVLFHGQTTELFPAGALGPVRINHADGMISDIHFFDLGHQNAVVAAETLVIDPMSE--- 229 Query: 220 DKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN 279 RS E L LF+Y + Sbjct: 230 --------RS----------------------------------VGGEALVDLFTYLDGS 247 Query: 280 TLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL 339 ++V++ + + R LA + VD R F + W Sbjct: 248 EIIVDSTVPDHAEMR-----LAALDESDVDKER-----------RKRAFVDRSTWRHALR 291 Query: 340 KTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETF---DGPVVFSVESE---- 392 LP K + + +P V AQQ++ LR+F+E+ ++F+ +E Sbjct: 292 LATVLPAKGHS-----EPIP---VFAQQRSARATLRRFIESARQRGARILFTAATERDLQ 343 Query: 393 GRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFV-DTVRNLALICESDLLG 451 G GE R K A D ++ + GF T R L +I +++LG Sbjct: 344 GMERVAGEKAERRK----NWAAATRARDGAITSLLIDLDRGFTTGTRRPLIVITAAEVLG 399 Query: 452 ERVARRRQDSRRTINPDTLIRNLAELHI---GQPVVHLEHGVGRYAGMTTLEAGGITG-E 507 R R + P +A + I G ++HL+ G+ G+ + A ++ + Sbjct: 400 SRA--------RHLLPMARQAAVAGITIPVPGSAIIHLQRGLALLDGLELISAPNVSARD 451 Query: 508 YLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAE 567 + L +AND + VP++ L LI YAG L G +W+ +A +++ A Sbjct: 452 MIRLVFANDEAILVPIADLGLIWPYAGD-PSGVKLDDADGRSWAARCLRAEDEIDRTAVR 510 Query: 568 LLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 L D R E +Y+ F FP+ TPDQA AI VL D+ MDR+VC Sbjct: 511 LSDQIRARRRAEAPRIVAPAVEYERFVARFPYLVTPDQAAAIEDVLKDLGAGHPMDRIVC 570 Query: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 GDVGFGKTE+A+RAA V +QVA++VPTT+LA QH F RFA + + + +SR Sbjct: 571 GDVGFGKTEIALRAAAATVFAGRQVALIVPTTVLAAQHVQTFVKRFAPFGISVGHLSRLS 630 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 + + ++A+G + ++IGT L DV+F DLGL+IVDEE FG K R+ A+RA Sbjct: 631 TTADARSTRRQLADGTLKLVIGTTALAADDVRFADLGLVIVDEEQHFGAADKARLSALRA 690 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL 807 V LT++ATPIPRT+ AM+G+RDLSIIATPP RR V T V + A+ RE Sbjct: 691 GVHALTMSATPIPRTMAGAMAGLRDLSIIATPPVRRRPVLTKVEPLLDATLSMALRREHR 750 Query: 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 RGGQ + + ++++ ERL+ LVPE IA+ HG+M RE++ M F + ++L+ Sbjct: 751 RGGQSFVICPRIKDLAPMRERLSHLVPELGIAMIHGRMPAREIDAEMMRFVAGKADILLA 810 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 T I+E G+DIP ANTI+I A+HFGL+QLHQLRGRVGR +AYA+LL P AQ Sbjct: 811 TNIVENGLDIPRANTILISGAEHFGLSQLHQLRGRVGRGGIRAYAYLLADTPG---DAAQ 867 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK 987 KRL A+ L GAGF ++ DL++RGAG+LL E+Q+G ++ G +LY ELL A+ Sbjct: 868 KRLSALQELHFAGAGFQISARDLDLRGAGDLLSEQQAGHVQVFGPALYQELLSRALQ--- 924 Query: 988 AGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELI 1047 GR + E+ + P+ LP D++ D TRL Y R+A A+T ++++I+ ++ Sbjct: 925 -GRPHRAAEF--WLPELRIDRPAFLPSDYVQDQVTRLDVYARLAHAETVADIDDIEDDMQ 981 Query: 1048 DRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKG 1084 RFG P A L+ AR+R LGI +L+ +G Sbjct: 982 LRFGHPPQEASNLIASARIRLDCHALGIARLDVGTEG 1018 >UniRef50_D1AW65 DEAD/DEAH box helicase domain protein n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AW65_STRM9 Length = 900 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 238/622 (38%), Positives = 378/622 (60%), Gaps = 20/622 (3%) Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 N+ ++ G V+H+E G+G Y G + +YL + YA++ KLY+PV L IS+Y Sbjct: 280 NINQILEGDYVIHVEFGIGIYMGAVNIN----DRDYLYIQYADNDKLYIPVEKLDRISKY 335 Query: 533 AGGAEENAP-LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 591 AP L+ LG + R ++ E V A EL++I A+R D + Sbjct: 336 MSTGI--APKLYSLGTKGFKRREKRIREDVEKFAQELINIQAKRKLVRKLPLIKDTLWQE 393 Query: 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ 651 F + F F T DQ +A+ + D+ MDR++ GDVG+GKTEVAMRAAF A++N Q Sbjct: 394 EFEEKFSFNLTWDQQKAVEDIKHDLESGRLMDRILVGDVGYGKTEVAMRAAFKAIENGYQ 453 Query: 652 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 711 A+L PTT+LA QH++ RF ++ + + +SR + K +L + GKID++IGTH Sbjct: 454 CAILAPTTVLANQHFERCHKRFEDFGISVNNLSRL-TGKNTDDVLDGLKNGKIDLVIGTH 512 Query: 712 KLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR 771 +LL DVKFK+LGLLI+DEE +FGV KE+IK + ++ +LTL+ATPIPRTLN+A+ G+R Sbjct: 513 RLLGDDVKFKNLGLLIIDEEQKFGVNAKEKIKKRKEDIHLLTLSATPIPRTLNLALLGIR 572 Query: 772 DLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 831 D+S+I + P RL + T + D +++ IL+E+ R GQV+Y+ N+V+ + + + L + Sbjct: 573 DISLIQSSPMDRLPIITQKIQEDE--IKKVILKELSRDGQVFYITNNVKGMAEKQKSLKK 630 Query: 832 LVPE-ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 L+P+ I HG++ RE+++ +NDF +F++L+ +TI+E GIDI AN+IIIE Sbjct: 631 LMPDFVNIEYIHGKLSPREIKQKINDFDEGKFDILIASTIVENGIDITNANSIIIENYTS 690 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLL-TPHPKAMTTDAQKRLEAIASLEDLGAGFALATHD 949 GL+Q++QLRGRVGR Q Y +LL + + + K LE I +E G G+ L+ D Sbjct: 691 LGLSQIYQLRGRVGRGKRQGYCYLLDSEYKSKKGKEKDKSLEKIEGVE--GGGYLLSLED 748 Query: 950 LEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMP 1009 L IRGAGE+LGE+Q G+++ G+ LY+++L+N ++ LK + ++ TE++L Sbjct: 749 LNIRGAGEILGEKQHGAIDMFGYDLYLKMLKNEINKLKGEKVREFKN-----TEIDLLNN 803 Query: 1010 SLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQ 1069 +P+++I + R+ YKR A + E+EL E+ E+ DRFG +P + + +++ Sbjct: 804 GYIPEEYIEK-DERILIYKRYAEVQNESELNELTEEIRDRFGKIPKQMQNFIYSIKIKLY 862 Query: 1070 AQKLGIRKLEGNEKGGVIEFAE 1091 + I K++ N+K ++ E Sbjct: 863 MIENNIDKIKENDKEYILTLQE 884 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 75/144 (52%), Gaps = 7/144 (4%) Query: 71 ADWETLPYDSFSPHQ--DIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHAL 128 +++E+ Y + S + D++ + L L +G+L + +N L ++ F + Sbjct: 47 SEYES-KYVNLSSYSFIDLVGVNIEILEFLNKNTKGILFLDIN-LALKIFFDEF---KSK 101 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 K + SRD + L GY+ V+ GE+A RG ++D++P + P RLDFFD Sbjct: 102 EFKVNEEYSRDEILKYLVENGYKKEYTVLNKGEFAIRGDIIDIYPSNLDNPIRLDFFDTI 161 Query: 189 IDSLRVFDVDSQRTLEEVEAINLL 212 ++++++F QR++E +E I + Sbjct: 162 LENIKIFSTYDQRSIENIEEITVF 185 >UniRef50_C3XFZ1 Transcription-repair coupling factor n=2 Tax=Campylobacterales RepID=C3XFZ1_9HELI Length = 1042 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 232/617 (37%), Positives = 367/617 (59%), Gaps = 22/617 (3%) Query: 474 LAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYA 533 L L +G VVH E+G+G + + + G +++ + YAND +L +PV +L++I +Y+ Sbjct: 394 LDALKVGAYVVHSEYGIGIFEAIKQVSIMGGLKDFISIIYANDDRLLLPVENLNMIEQYS 453 Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR----EQ 589 + + KLG ++ + + EK+ +A E++ + AQR +G + + Sbjct: 454 A-YDSVVRIDKLGKSSFLKLKDSIKEKLFAIANEIIRLQAQRTLAKGVKIELETPDQITA 512 Query: 590 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH 649 + F S F T DQ AI L D+ + MDRL+ GDVGFGKTEVAM F + N Sbjct: 513 FNTFESSRGFTLTQDQTHAIQESLKDLKSGMIMDRLLNGDVGFGKTEVAMSLCFASALND 572 Query: 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPV------RIEMISRFRSAKEQTQILAEVAEGK 703 VLVPTTLL QH+++F++R N + I I RF +A Q + + E + Sbjct: 573 FNSIVLVPTTLLCNQHFESFKERLHNTKLPNGKILYIAKIDRFTTAT-QKRAIQENFKDN 631 Query: 704 IDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTL 763 I I++GTH L +++ ++LGL+++DEEH+FGV+ KE +K IL+++ATPIPRTL Sbjct: 632 IQIIVGTHSLF--NLEIENLGLMVIDEEHKFGVKQKELLKQKSLTTHILSMSATPIPRTL 689 Query: 764 NMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQ 823 NMA S ++ +S + TPP + KTFV+ +++E ILRE+ RGGQV+Y++N++ I Sbjct: 690 NMAYSKLKSISELKTPPFFKQESKTFVKVKQDSLIKEVILRELRRGGQVFYIFNNIAKIT 749 Query: 824 KAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 L +L+P+ RI I H Q+ ++ E+ M F + +++L+CT+I+E+GI +P ANTI Sbjct: 750 TIQSYLHDLLPQLRILILHSQINPKDTEKGMLAFLKKEYDLLLCTSIVESGIHLPNANTI 809 Query: 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGF 943 II+ A +FG+A LHQLRGRVGR H + +LLT + +T DA KRL ++ LG+G Sbjct: 810 IIDDAHNFGIADLHQLRGRVGRGKHVGFCYLLT--NENITQDAAKRLLSLEKNSYLGSGA 867 Query: 944 ALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTE 1003 ALA HDLEIRG G LLGE QSG ++ +GF +Y+ +LE+ + +L + Q+ + Sbjct: 868 ALAYHDLEIRGGGNLLGEAQSGHIKQVGFGMYVRMLEDTLQSLLQNEQQ------EQKVD 921 Query: 1004 VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDI 1063 ++L + + L + + RL Y+R++ K+E E+ EI+ E+ RFG L + L+I Sbjct: 922 IKLSVSAFLNESLVSSERMRLDLYRRLSQVKSEFEVREIEGEIEQRFGRLDIYSLQFLEI 981 Query: 1064 ARLRQQAQKLGIRKLEG 1080 ++ A +LGI+ + Sbjct: 982 IIIKTLALQLGIKAISN 998 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 47/168 (27%), Positives = 83/168 (49%), Gaps = 9/168 (5%) Query: 70 LADWETLPYDS---FSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGH 126 L D P+DS F + ++L+ Y+ Q +LI P +TLM + LH Sbjct: 82 LPDIRLSPFDSTQSFYEEFHELFAKLALWYENDCKQ--ILISPPHTLMAFMPSKELLH-- 137 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 + ++K + + +L GY HV+ V GE++ RG ++D+F E P R+ FD Sbjct: 138 SFCVRKSENIVVKDFIAKLIHYGYEHVEIVEMQGEFSHRGDIIDIFIPSFEFPVRISLFD 197 Query: 187 DEIDSLRVFDVDSQRTLEE-VEAINLLPAHEFPTDKAAIELFRSQWRD 233 EI+ + F+ ++Q + E +E + + PA F D++ L S+ ++ Sbjct: 198 TEIEEINFFNHETQLSQNEMIENLKIYPAI-FSLDESQHTLLESRIKE 244 >UniRef50_A9S9T2 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S9T2_PHYPA Length = 792 Score = 425 bits (1092), Expect = e-117, Method: Compositional matrix adjust. Identities = 242/646 (37%), Positives = 371/646 (57%), Gaps = 18/646 (2%) Query: 451 GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGIT--GEY 508 G+ VA + ++PDTL G+ VVH GVG + G+ G T +Y Sbjct: 91 GQGVAVDGEAFSYAVDPDTL-------SPGEYVVHKRVGVGCFIGIKYEVPAGKTKPAKY 143 Query: 509 LMLTYAND-AKLYVPVSSLHLISRYAGGAEENAP-LHKLGGDA-WSRARQKAAEKVRDVA 565 + L YA+ AKL +S L ++ G AP L KL W + K ++ + Sbjct: 144 IYLKYADGVAKLRAKQASRLLYRYFSPGDVGRAPVLSKLNDPGNWEKRVSKGKLAIQKLV 203 Query: 566 AELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQ-PLAMDR 624 ++++Y R + + + + F FP++ T DQ QAI V DM + MDR Sbjct: 204 VNMMELYIHRLKQTRPVYPKNSKLMDSFAAKFPYKETSDQVQAIADVERDMTERETPMDR 263 Query: 625 LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMIS 684 L+CGDVGFGKTEVA+RA FLA +Q +L PTT+LA+QHYD R RFA + +++ ++S Sbjct: 264 LICGDVGFGKTEVALRALFLAASAGRQAMLLAPTTVLAKQHYDVIRQRFAGYDMKVALLS 323 Query: 685 RFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKA 744 RF+ E+ +++A +++G + I++GTH LL + V++ +LGLL+VDEE RFGVR KERI + Sbjct: 324 RFQKDGEKKEVIAGISDGSLSIVVGTHSLLGNQVRYHNLGLLVVDEEQRFGVRQKERITS 383 Query: 745 MRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILR 804 M+ +VD+LTL+ATPIPRTL +A+SG RD S+I TPPA R + T + E++ V++AI Sbjct: 384 MKTSVDVLTLSATPIPRTLYLALSGFRDASLITTPPAERRPITTHLMEFNPEAVKKAIDF 443 Query: 805 EILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNV 864 E+ RGGQV+Y+ V+ ++++ L P+ I + HGQ LE M F + + Sbjct: 444 ELKRGGQVFYVVPRVKGMEESKAILESYFPDVGIGVAHGQQSATVLEESMEQFSEGTYLI 503 Query: 865 LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTT 924 L+CT+I+E+G+DI NTIIIE FGLAQL+QLRGRVGRS +A+A++ P + ++ Sbjct: 504 LLCTSIVESGLDIRRVNTIIIEDVQLFGLAQLYQLRGRVGRSDREAHAYMFHPSKENLSD 563 Query: 925 DAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVD 984 DA +RL A+ LG GF LA D+ IRG G + GE+QSG + IG LY+E+L + Sbjct: 564 DALERLVALEDCCGLGQGFQLAERDMAIRGIGSVFGEKQSGDVAKIGVDLYLEMLFEGLS 623 Query: 985 ALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTE--NELEEI 1042 + + P ++T ++ +++L + + +P D++ R + A N L + Sbjct: 624 NVDLQKLP---EVTFEEVQLDLAVSTHIPGDYVTSAALRDKVLRDAEKAANNGMNALMQF 680 Query: 1043 KVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088 L + +G P LL +++ A LGI ++ K V++ Sbjct: 681 TNRLRNEYGPEPPTVEMLLKTLYVKRLAADLGIHRIRTRGKTVVMD 726 >UniRef50_C7CIQ8 DEAD/DEAH box helicase domain protein n=9 Tax=Alphaproteobacteria RepID=C7CIQ8_METED Length = 1111 Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust. Identities = 240/620 (38%), Positives = 360/620 (58%), Gaps = 8/620 (1%) Query: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGE-YLMLTYANDAKLYVPVSSLHLISRYAG 534 EL +G + +HG+ + G+ + G E L L +A+DA L VPVS I RY G Sbjct: 451 ELRVGDVSIDRDHGLCLFEGLEAIRGGEEDEEDALRLRFADDAILMVPVSQADRIWRY-G 509 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 E L +L G W+R R +A + A +L +R + + F Sbjct: 510 SEAEAVTLDRLDGGTWARRRLEAEATLAKAARAMLKAAQERREAHAPQIVPPEREMERFA 569 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 F + T DQA A+ L+D+ + + MDRLVCGDVGFGKTEVA+RAA A+ +Q+AV Sbjct: 570 AGFGYPLTGDQAGAVEETLADLAREMPMDRLVCGDVGFGKTEVALRAAAAAIFAGRQIAV 629 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 + PTT+L +QH + FR RFA + + + +SR S E ++ +A+G + +++GT L Sbjct: 630 MAPTTVLVRQHVETFRRRFARFCIEVAHLSRLVSPAEAKRVKQGLADGSVRLVVGTQALA 689 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 V F DLGL I+DEE RFG + K ++ + ILTL+ATPIPRTL AM G++ LS Sbjct: 690 GRGVSFHDLGLAIIDEEQRFGAKTKASLRKAAGDAHILTLSATPIPRTLQAAMVGLQSLS 749 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 +IATPPA R ++T + ++ + A+ RE RGGQ + + +E+I A+RL LVP Sbjct: 750 VIATPPAVRQPIRTVIAPFEESTLAAALRREHRRGGQSFVVCPRIEDIAPMAKRLHALVP 809 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 + HG+M+ E++ M F +VL+ T+IIE+G+D+P ANT+++ A+ FGLA Sbjct: 810 GLDVVTAHGEMKPAEMDDAMVRFADGNGDVLLATSIIESGLDVPRANTMLVWDAERFGLA 869 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QLHQLRGRVGR + +L K ++ +KRL + +L+ LGAGFA++ DL++RG Sbjct: 870 QLHQLRGRVGRGQRRGVVYLFGHPDKPLSHSTEKRLRTLEALDRLGAGFAISARDLDLRG 929 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPD 1014 AG+L+G++QSG ++ +G LY LL+ AL+A + + ED + EV + + +P Sbjct: 930 AGDLVGDDQSGHVKLVGLGLYQHLLQL---ALRAAKGEAAEDWSP---EVRIGLNGRVPA 983 Query: 1015 DFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 D+IP+ RLS Y R+ + E E++ ++ E+ DRFG LP+ L +ARLR LG Sbjct: 984 DYIPEPEIRLSLYTRLLRLRAEAEIDALRDEIEDRFGPLPESVDALFTLARLRIGCLALG 1043 Query: 1075 IRKLEGNEKGGVIEFAEKNH 1094 I +L G +G +F H Sbjct: 1044 IVRLSGGPQGIAADFHPDRH 1063 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/172 (30%), Positives = 84/172 (48%), Gaps = 5/172 (2%) Query: 64 DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPT--MQRGVLIVPVNTLMQRVCPHS 121 ++ V +W+ LP+D SP + ++ +R L L Q +++ L+QRV P Sbjct: 67 ERTVAVYPEWDCLPFDRASPSRGVMGARTGVLRWLTDDRAQPDIVLTTAPALLQRVPPPE 126 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 + ++ G+ L + L QL GY D+V E GE A RG +D+FP + LP R Sbjct: 127 TWESAHIELRVGEPLDAEQLTAQLARLGYILDDRVDEPGEVAVRGRTIDVFPAAAPLPCR 186 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF---PTDKAAIELFRSQ 230 ++ I ++R +D SQR+ E E + + PA E P A+E F Q Sbjct: 187 VEHDGARITAIRSYDPVSQRSRVETERLVIDPATEIILDPDSGLALEPFTGQ 238 >UniRef50_B7GBS8 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GBS8_PHATR Length = 942 Score = 398 bits (1022), Expect = e-109, Method: Compositional matrix adjust. Identities = 229/586 (39%), Positives = 340/586 (58%), Gaps = 32/586 (5%) Query: 509 LMLTYANDAKLYVPVSSLHLISRY-AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAE 567 L +TYA DA ++VPV + +SRY AG A L ++ G+AWS+A+QK E +A + Sbjct: 179 LEITYA-DAVVHVPVDRAYRLSRYRAGDAVVKPKLSRVKGEAWSKAKQKVEENTLQLAQD 237 Query: 568 LLDIYAQRAAKEGFAFKHDREQY-QLFCDSFPFETTPDQAQAINAVLSDMC-QPLAMDRL 625 +L +YA R + F E Q F SF +E T DQ + + +DM + MDRL Sbjct: 238 VLALYATRETLQRQPFDPSVEDVVQEFSKSFLYEPTTDQKKCFEEIENDMVWRSRPMDRL 297 Query: 626 VCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA---NWPVRIEM 682 +CGDVGFGKTEVA+RA F ++ N +Q A+L PT +LA QHY N R + + I + Sbjct: 298 ICGDVGFGKTEVAIRALFRSIINGRQAALLAPTGVLAAQHYKNIVKRMGPGTEYNINIAL 357 Query: 683 I--SRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE 740 + + K ++ E+ GK +++GTH LL +++KFK+LGLL+VDEE RFGV+ KE Sbjct: 358 LRGGMGKQTKAGRELRGEIEGGKTQLIVGTHALLSNEMKFKNLGLLVVDEEQRFGVKQKE 417 Query: 741 RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVRE 800 R+K + +D+LTL+ATPIPRTL M++SG+RD S I +PP R T V+++ +V+ Sbjct: 418 RLKLICDGIDVLTLSATPIPRTLQMSLSGIRDTSTIRSPPPMRKPTVTHVQDFSEDIVKT 477 Query: 801 AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ 860 AI E+ RGGQ YY+ + + +A + + L P RI HG+M+ E + +F Sbjct: 478 AISTELARGGQCYYVVPRISMLDEAEQTIQSLFPGIRIIQAHGRMQRNGAEENVAEFAEG 537 Query: 861 RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 920 ++VL+ TT+IE G+DIP+ NTI+++ + FG++ L+QLRGRVGRS QA+A+ L + Sbjct: 538 NYDVLLATTVIENGVDIPSVNTIVVQNSQAFGMSTLYQLRGRVGRSDKQAFAYFLY-REE 596 Query: 921 AMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLE 980 ++T A RL+AI L +LG+GF +A DLEIRGAG LLG EQSG +GF LYM +L+ Sbjct: 597 SITEQAAMRLQAIGELSELGSGFDVANRDLEIRGAGSLLGTEQSGMAAKVGFDLYMRMLK 656 Query: 981 NAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV-NTRLSFYKRIASAKTE--- 1036 ++ L+ P + R L P D P + +SF +R + ++E Sbjct: 657 KSIRKLRGLDLPLVP-----------RTNILFPTDGSPSTFSLPMSFIERQSERRSEETK 705 Query: 1037 -------NELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 + L + E ++G LP + L L ++LGI Sbjct: 706 ARLAESTSALVTLTNEWKSKYGSLPSTLQNQLKTLHLHACTRRLGI 751 >UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaerobacter ethanolicus CCSD1 RepID=C7IS11_THEET Length = 765 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 242/750 (32%), Positives = 398/750 (53%), Gaps = 45/750 (6%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSF 81 LT + A + I + V++IAPD A ++++++ F E L Y Sbjct: 31 LTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLYSFNFGNASLFPKREALFYKID 90 Query: 82 SPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDAL 141 + Q+++S RL + +L ++ ++ + ++ P + V K G ++ + + Sbjct: 91 AASQEVVSQRLQVIKKLSEESPHAVVTSIDAAVGKLIPMDLFKKYQFVFKLGVTVNLEEV 150 Query: 142 RTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR 201 L + GY V V G+++ RG ++D+F E PYR++ FDDEIDS+R FDV +QR Sbjct: 151 IKSLVTMGYERVQMVEGKGQFSVRGGIIDVFSPTEEYPYRIELFDDEIDSIRTFDVITQR 210 Query: 202 TLEEVEAINLLPAHEFPTDKAAIE----------------LFRSQWRDTFEVKRDPEHIY 245 +LE ++ IN+ PA EF I+ + +S+ ++++ E I Sbjct: 211 SLENIDKINIFPATEFIAGAEHIKKGISAVSNYLNSYLSKIKKSKSGIAEKLQQKFEEIM 270 Query: 246 QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQADTLARF 303 +++++ I Y +F + + + Y + +++ + ++ Q + F Sbjct: 271 EEITESKRVENI-YELIDYFYDDVYSIVDYMGEDAVIILDESSRIKQRVNNLQMEFNENF 329 Query: 304 ENRGVDPMRPLLPPQS-LWLRVDELFSELKN----------WPRVQLKTEHLPTKAANAN 352 + + +LP QS L+ +E+ +KN P +L+ + + + + Sbjct: 330 --KALLEKGEVLPEQSKLFFDYEEILKRVKNNFLLIMNTLAKPGNELQPQTIVNFVSRSM 387 Query: 353 LGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRI 412 F D+ V D L K+ + V+ ++ R L + L I I Sbjct: 388 HHFHGNMDILV--------DDL-KYYKNAGYKVLLLSGNQERARILKDTLDSFNIDTVVI 438 Query: 413 MRLDEASDRGRYLMIGAA-EHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLI 471 + +G+ ++ A+ GF A+I + ++ G+ +RR+ + + N D I Sbjct: 439 KDSEYDIQKGQVVIYPASVSKGFEYVDAKFAVISDGEIFGQ--TKRRKRTVKIKNADK-I 495 Query: 472 RNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISR 531 ++ EL IG VVH+ +G+G+Y G+ ++ GI +YL + YA L+VPV L L+ + Sbjct: 496 KSFTELEIGSYVVHVNYGIGKYEGIEKIKVDGIVRDYLKIIYAGGDTLFVPVEQLDLVQK 555 Query: 532 YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 591 Y G + L+KLGG W RA++KA + V D+A +L+ +YA+R +G AF D + Sbjct: 556 YVGPTDNPPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAFSPDTPWQK 615 Query: 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ 651 F + FP+E T DQ + I + DM + MDRL+CGDVG+GKTEVA+RAAF AV + KQ Sbjct: 616 EFEEQFPYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTEVALRAAFKAVADGKQ 675 Query: 652 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 711 VA L PTT+LA QHY NF +RF +PV+IEM+SRFR+ KEQ++I+ E+AEG IDI++GTH Sbjct: 676 VAFLCPTTILAYQHYTNFIERFKEFPVKIEMLSRFRTPKEQSKIIKELAEGNIDIIVGTH 735 Query: 712 KLLQSDVKFKDLGLLIVDEEHRFGVRHKER 741 +LLQ+D+KFKDLGLLI+DEE RFGV HKE+ Sbjct: 736 RLLQNDIKFKDLGLLIIDEEQRFGVVHKEK 765 >UniRef50_A4RX81 Predicted protein n=4 Tax=Mamiellales RepID=A4RX81_OSTLU Length = 754 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 214/516 (41%), Positives = 309/516 (59%), Gaps = 13/516 (2%) Query: 476 ELHIGQPVVHLEHGVGRYAGMTTLEA-----GGITGEYLMLTYANDAKLYVPVSSLHLIS 530 +L G+ VVH ++G+G++ GM L G +L L Y + P +S L+ Sbjct: 67 KLVTGEYVVHRKYGIGQFLGMKVLAVESANEGTQNKPFLFLKYQDATAKISPEASRRLLY 126 Query: 531 RYA--GGAEENAPLHKLGGDA-WSRARQKAAEKVRDVAAELLDIYAQR--AAKEGFAFKH 585 R+ GG + L+KL + W +K +R + + +Y QR +E + Sbjct: 127 RFCSPGGLVKPPKLNKLNDKSTWDLRERKTEATIRRLVVNQMVVYLQRLQCVREPYPLP- 185 Query: 586 DREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA 645 D E+ + F SFPF TPDQ AI + D+ Q MDRLV GDVGFGKTEVAMRA F Sbjct: 186 DPERAKQFDASFPFTLTPDQTSAIQEITEDLQQDAPMDRLVIGDVGFGKTEVAMRAMFHV 245 Query: 646 VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID 705 + V ++ PTT+LA+QH N RF + +E+++R A +Q I + +GK+ Sbjct: 246 ASSGGGVFMMAPTTVLAKQHAANLAVRFRPLGINVELVTRHIQAAKQNTIFDDFRDGKVQ 305 Query: 706 ILIGTHKLLQSDVKF-KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 I++GTHKL+ + ++ K L LL++DEE RFGV+HK++I A++A VD+LTL+ATPIPRTL+ Sbjct: 306 IIVGTHKLVNLEQEYYKQLRLLVIDEEQRFGVKHKDQISALKAEVDVLTLSATPIPRTLH 365 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 MAMSG RD S++ TPP R + T + + +R+AI EI R GQ+YY+ + ++ Sbjct: 366 MAMSGFRDASLVQTPPPERRPINTVLAPQNDDDIRKAIEYEISRNGQIYYIVPRINMMRD 425 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 A +RL L P +I HGQM ++ M F + +VL+ TTI+E+G+DIP NTII Sbjct: 426 ACDRLLRLFPNLQIMTAHGQMDGEAIDDAMESFSNGSADVLIATTIVESGLDIPNCNTII 485 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLL-TPHPKAMTTDAQKRLEAIASLEDLGAGF 943 IE FGLA L+QLRGRVGR+ QAYA++ + +TT AQ+RL A+ LG GF Sbjct: 486 IENVQFFGLASLYQLRGRVGRAGRQAYAYMFYSADESELTTGAQERLAALEECCGLGEGF 545 Query: 944 ALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELL 979 L+ D+ IRG G + GE+QSG ++++G LY+ELL Sbjct: 546 RLSERDMGIRGVGTMFGEKQSGDVDSVGADLYLELL 581 >UniRef50_Q2R377 CarD-like transcriptional regulator family protein, expressed n=14 Tax=Magnoliophyta RepID=Q2R377_ORYSJ Length = 832 Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust. Identities = 224/616 (36%), Positives = 360/616 (58%), Gaps = 17/616 (2%) Query: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAND-AKLYVPVSSLHLISRYAG 534 EL G+ VVH + GVG++ ++ + G+ +Y+ + YA+ AKL V ++ ++ RY Sbjct: 156 ELEAGEYVVHKKVGVGKFVCISAED--GL--DYVFIQYADAMAKLAVDQAA-RMLYRYNL 210 Query: 535 GAEENAP--LHKLGG-DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 591 E+ P L KL W + R K V+ + L+++Y QR ++ + Q Sbjct: 211 PHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKRPPYPKPVGMDQ 270 Query: 592 LFCDSFPFETTPDQAQAINAVLSDMCQ-PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 F FP+E TPDQ QA V D+ + MDRL+CGDVGFGKTEVAMRA F+ + Sbjct: 271 -FTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISAGF 329 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIG 709 Q VL PT +LA+QHYD +RF+N+P +++ M S ++ +E+ +++ ++ G + I++G Sbjct: 330 QAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHIIVG 389 Query: 710 THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSG 769 TH +L + + +LGLL+VDEE +FGV+ KE+I + +A++D+LTL+ATPIPRTL +A++G Sbjct: 390 THAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLALTG 449 Query: 770 MRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 RD S+++TPP R+AV+T+V + AI E+ RGGQV+Y+ ++ I + L Sbjct: 450 FRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQFL 509 Query: 830 AELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 + +P+ +A+ HG+ + ++ M F +LVCT IIE+GIDIP ANT++++ A+ Sbjct: 510 KDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQYAE 569 Query: 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHD 949 FGLAQL+QLRGRVGRS + +A+L ++ A RL AI DLG GF +A D Sbjct: 570 LFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAEKD 629 Query: 950 LEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMP 1009 + IRG G L GE+QSG + +G L+ ++L D+L + L + + ++++ + Sbjct: 630 MGIRGFGSLFGEQQSGDVANVGIDLFFDML---FDSLSKVDQFCLIPVPYKDVQLDINIS 686 Query: 1010 SLLPDDFIPDVNTRLSFYKRIASAKTEN--ELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 S L ++I + + A A ++ L + +L ++G P LL +R Sbjct: 687 SRLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKEPRDMELLLKKLYVR 746 Query: 1068 QQAQKLGIRKLEGNEK 1083 + A LGI ++ + K Sbjct: 747 RMAADLGISRIYSSGK 762 >UniRef50_Q89L81 Bll4667 protein n=2 Tax=Bradyrhizobium RepID=Q89L81_BRAJA Length = 1093 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 266/755 (35%), Positives = 406/755 (53%), Gaps = 31/755 (4%) Query: 332 KNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETF--DGPVVFSV 389 ++W ++ + LP A+ FQ +P+ + + ALR F+E G + V Sbjct: 309 RDWKQLSRGMKVLPRTAS-----FQPIPEFSKLTSSR---KALRAFVEETRRAGSRLILV 360 Query: 390 ESEGRREALGELLARIKIAPQRIMRLDEA--SDRGRYLMIGAAEHGFV-DTVRNLALICE 446 ++ + E + +K QR DEA G ++ + GFV ++L ++ Sbjct: 361 AAQEDDLRVMERMGGVKA--QRCENWDEAVRGRSGEAALLADLDAGFVVPGKKSLVVVTA 418 Query: 447 SDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLE-AGGIT 505 SD+LG R A Q R + ++ E G VVHL+ G+ G+ T+ GG Sbjct: 419 SDVLGSR-AHHPQPMARAWSAAFDHADVPEQ--GTVVVHLQRGLAVLDGLQTVNTGGGAL 475 Query: 506 GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVA 565 E + L +A D + VP L L+ YA + A L K G +W AR+ AE+ +A Sbjct: 476 REMIRLVFAGDNAVLVPPPDLALMWPYATEPGKLA-LDKADGSSWW-ARRTEAEREIQIA 533 Query: 566 AELLDIY-AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDR 624 ++L + +QR + Y+ F FP+ TT DQA+AI VL D+ MDR Sbjct: 534 GKVLAKHISQRRRRRADKLVPPGSAYEKFVARFPYFTTVDQAKAIRDVLEDLASGHPMDR 593 Query: 625 LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMIS 684 ++CGDVGFGKTEVA+RAA V + KQVA+ VPTT+LA+QH F+ RFA + + + +S Sbjct: 594 VICGDVGFGKTEVALRAAAAVVLSGKQVAIAVPTTVLARQHVATFQKRFAPFDIEVGNLS 653 Query: 685 RFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKA 744 R S E + G+I +++GT L DVKF DLGL+I+DEE FG K R+ + Sbjct: 654 RATSGAELRATREGLRSGRIKVVVGTQALGGKDVKFDDLGLVIIDEEQHFGAAEKARLSS 713 Query: 745 MRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILR 804 + NV +L ++ATPIPRTL ++G RDLS+IA+PP RL V T + + A+LR Sbjct: 714 LAKNVHVLMMSATPIPRTLAAGLAGFRDLSVIASPPVHRLPVATRIAPLSDAAIASALLR 773 Query: 805 EILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNV 864 E R GQ + + ++++ R+ + + RI HG++ E++ M F R +V Sbjct: 774 EQRRHGQSFLICPRIQDLDPMLARVQAVAGDLRIVCLHGRLAADEIDDRMMSFVEGRADV 833 Query: 865 LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTT 924 L+ T I+E+G+DIP ANTI++ + FGLAQLHQLRGRVGRS +A+A LLT + + Sbjct: 834 LLATNIVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRSGIRAFAHLLT---ETNSG 890 Query: 925 DAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVD 984 ++KRL + GAGFA++ DL++RGAG+L E+QSG ++ G LY LL+ A + Sbjct: 891 QSEKRLAVLEEFSRPGAGFAISERDLDLRGAGDLFSEQQSGHVQVFGPVLYSHLLKMASE 950 Query: 985 ALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKV 1044 + E ++ L + +LP+ ++ RL Y R A +E++L +++ Sbjct: 951 KVDE------ERAAVWVPDLNLPVADMLPETYVHSEPVRLELYARAARCSSEDDLVDLEE 1004 Query: 1045 ELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLE 1079 E RFG LP AR A+LR + ++ GI +L+ Sbjct: 1005 ETSRRFGPLPKVARDFFAAAKLRLECKRRGIIRLD 1039 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 2/195 (1%) Query: 24 GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFS 82 G+ L+A+ + +V +A A RL I V+ TLP+D Sbjct: 58 GSMALHLLAQWKQSGRSGIVFLAESENRAERLGSVIHALDPACEVLVFPRLNTLPFDQLE 117 Query: 83 PHQDIISSRLSTLYQLPTMQRGVLIVPV-NTLMQRVCPHSFLHGHALVMKKGQRLSRDAL 141 P ++ R S L +L ++ + +V +M+R+ P + L ++ +K G S L Sbjct: 118 PSHELAGRRASVLRRLAKSRKPLFLVSTAEAVMERLPPPASLSRLSVSLKVGGAFSERDL 177 Query: 142 RTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR 201 R +L+ GY D+ G G ++FP G+ P+R++ I + FD Sbjct: 178 RGRLEELGYDLEDEPDYPGGALFHGQTFEIFPAGALGPFRIEHSGRAISRIVAFDPKEHD 237 Query: 202 TLEEVEAINLLPAHE 216 + E + + P E Sbjct: 238 IIFETSELLVDPMSE 252 >UniRef50_B9GNF6 Predicted protein n=2 Tax=rosids RepID=B9GNF6_POPTR Length = 939 Score = 378 bits (971), Expect = e-103, Method: Compositional matrix adjust. Identities = 241/697 (34%), Positives = 363/697 (52%), Gaps = 80/697 (11%) Query: 449 LLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITG-- 506 L G+RVA+ ++P TL G VVH + G+GR+ G+ + G + Sbjct: 117 LKGDRVAKEGDVFSYKVDPYTL-------SSGDYVVHKKVGIGRFVGIKFDMSKGSSEAI 169 Query: 507 EYLMLTYAND-AKLYVPVSSLHLISRYAGGAEENAP--LHKLGGD-AWSRARQKAAEKVR 562 EY+ + YA+ AKL V +S ++ RY + P L KL + AW R + K ++ Sbjct: 170 EYVFIEYADGMAKLPVKQAS-RMLYRYNLPNDTKKPRTLSKLSDNGAWERRKTKGKVAIQ 228 Query: 563 DVAAELLDIYAQRAAKEGFAFKHDREQYQL------FCDSFPFETTPDQAQAINAVLSDM 616 + +L+++Y R K R Y F FP+E TPDQ QA V+ D+ Sbjct: 229 KMVVDLMELYLHR-------LKQRRPPYPKTPAMVDFSAQFPYEPTPDQKQAFIDVMRDL 281 Query: 617 CQ-PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 + MDRL+CGDVGFGKTEVA+RA F V KQ VL PT +LA+QH+D +RF+ Sbjct: 282 TERETPMDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLARQHFDVISERFSK 341 Query: 676 WP-VRIEMISRFR------SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 728 +P +++ ++SRF+ S E+ L G +DI++GTH LL S V + +LGLL+V Sbjct: 342 YPHIKVALLSRFQAYLLLQSKAEKEMYLEMTKHGHLDIIVGTHSLLGSRVVYNNLGLLVV 401 Query: 729 DEEH---------------------------RFGVRHKERIKAMRANVDILTLTATPIPR 761 DEE RFGV+ KE+I + + +VD+LTLTATPIPR Sbjct: 402 DEEQTTNKRKGKGNFSINHDFANEKEKKESRRFGVKQKEKIASFKTSVDVLTLTATPIPR 461 Query: 762 TLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVEN 821 TL +A++G RD S+I+TPP R+ +KT + Y + AI E+ RGGQV+Y+ ++ Sbjct: 462 TLYLALTGFRDASLISTPPPERVPIKTHLSAYSKERLISAIKYELDRGGQVFYVLPRIKG 521 Query: 822 IQKAAERLAELVPEARIAIGHGQMRERE-------------LERVMNDFHHQRFNVLVCT 868 +++ + L + IA+ HGQ ++ LE M F +L+CT Sbjct: 522 LEEVKDFLEQSFSNVEIAVAHGQHVTKKGNSFLLVKQYSKLLEDTMEQFAQGEIKILICT 581 Query: 869 TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQK 928 I+E+G+DI ANTIII+ FGLAQL+QLRGRVGR+ +A+A L P +T A + Sbjct: 582 NIVESGLDIQNANTIIIQDVQLFGLAQLYQLRGRVGRADKEAHAHLFYPDKSMLTDQALE 641 Query: 929 RLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKA 988 RL A+ ++LG GF LA D+ IRG G + GE+Q+G + +G + E+L ++L Sbjct: 642 RLAALEECQELGRGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDFFFEML---FESLSK 698 Query: 989 GREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTEN--ELEEIKVEL 1046 E + + Q +V+L + LP D+I + + A + L + L Sbjct: 699 VDEHRVISVPYQSVQVDLNINPHLPSDYINSLENPMEIINEAEKAAETDIWSLMQFTENL 758 Query: 1047 IDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 ++G P LL +R+ A +GI ++ + K Sbjct: 759 RCQYGKEPCSMEILLKKLYIRRMAADIGITRIYASGK 795 >UniRef50_B7F5N3 cDNA clone:J013044D20, full insert sequence n=6 Tax=Magnoliophyta RepID=B7F5N3_ORYSJ Length = 590 Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust. Identities = 196/524 (37%), Positives = 313/524 (59%), Gaps = 8/524 (1%) Query: 564 VAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQ-PLAM 622 + L+++Y QR ++ + Q F FP+E TPDQ QA V D+ + M Sbjct: 1 MVVNLMELYLQRMRQKRPPYPKPVGMDQ-FTAEFPYEPTPDQNQAFIDVDKDLTERETPM 59 Query: 623 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIE 681 DRL+CGDVGFGKTEVAMRA F+ + Q VL PT +LA+QHYD +RF+N+P +++ Sbjct: 60 DRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVA 119 Query: 682 MISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKER 741 M S ++ +E+ +++ ++ G + I++GTH +L + + +LGLL+VDEE +FGV+ KE+ Sbjct: 120 MFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEK 179 Query: 742 IKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREA 801 I + +A++D+LTL+ATPIPRTL +A++G RD S+++TPP R+AV+T+V + A Sbjct: 180 IASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSA 239 Query: 802 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR 861 I E+ RGGQV+Y+ ++ I + L + +P+ +A+ HG+ + ++ M F Sbjct: 240 IKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGE 299 Query: 862 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA 921 +LVCT IIE+GIDIP ANT++++ A+ FGLAQL+QLRGRVGRS + +A+L Sbjct: 300 VKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSL 359 Query: 922 MTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLEN 981 ++ A RL AI DLG GF +A D+ IRG G L GE+QSG + +G L+ ++L Sbjct: 360 LSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDML-- 417 Query: 982 AVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTEN--EL 1039 D+L + L + + ++++ + S L ++I + + A A ++ L Sbjct: 418 -FDSLSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLWTL 476 Query: 1040 EEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 + +L ++G P LL +R+ A LGI ++ + K Sbjct: 477 IQFTEDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGK 520 >UniRef50_C0BPF2 Helicase domain protein (Fragment) n=2 Tax=Bacteroidetes RepID=C0BPF2_9BACT Length = 465 Score = 362 bits (928), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 177/385 (45%), Positives = 259/385 (67%), Gaps = 8/385 (2%) Query: 702 GKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPR 761 G+IDI+IGTH+L+ VKFKDLGLLIVDEE +FGV K+++K+++ NVD+LTLTATPIPR Sbjct: 6 GRIDIVIGTHQLVNKAVKFKDLGLLIVDEEQKFGVGVKDKLKSLKENVDVLTLTATPIPR 65 Query: 762 TLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVEN 821 TL ++ RDLS+I T P R +++ V ++ ++REAI EI R GQV++++N +EN Sbjct: 66 TLQFSLMAARDLSVINTAPPNRYPIESNVVRFNETLIREAISYEIQRDGQVFFIHNRIEN 125 Query: 822 IQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 I + A + LVP+AR+ IGHGQM ++LE +M F F+VLV TTIIE+G+D+ AN Sbjct: 126 ITEVAGLIQRLVPDARVGIGHGQMEGKKLENLMKAFMGGEFDVLVSTTIIESGLDVSNAN 185 Query: 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGA 941 TI I A++FGL+ LHQ+RGRVGRS+ +A+ + +TP + MT DA+KR++A+ LG+ Sbjct: 186 TIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYEVMTADARKRIQALEQFTALGS 245 Query: 942 GFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGR-----EPSLED 996 GF +A DLEIRGAG++LG EQSG + IGF Y +++ A+D LK E +ED Sbjct: 246 GFNIAMKDLEIRGAGDILGGEQSGFINEIGFETYQKIMAEAIDELKNSEFKDLYEAPIED 305 Query: 997 LTSQ---QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLL 1053 +T+++ + L PDD+I + + RL Y + E+EL+ + ELIDRFG + Sbjct: 306 ENKAFALETQMDADIEMLFPDDYINNTSERLKLYTTLNGLSNESELDAFEKELIDRFGPI 365 Query: 1054 PDPARTLLDIARLRQQAQKLGIRKL 1078 PD + LL +++ +G+ K+ Sbjct: 366 PDETKDLLLAVQVKWICNYMGMEKV 390 >UniRef50_UPI0000D5484E transcription-repair coupling factor n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D5484E Length = 413 Score = 332 bits (851), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 168/411 (40%), Positives = 252/411 (61%), Gaps = 1/411 (0%) Query: 513 YANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIY 572 Y N+ KL +P+ +L+LISRY G + N L KLG + W + ++++ +A +L+ Sbjct: 1 YRNNDKLLLPIENLNLISRY-GFDDNNLILDKLGSNDWLLRKSSVKKRIKFLANKLIKNA 59 Query: 573 AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632 A+R + + + + F + F F T DQ AI L D+ Q +RL+CGDVGF Sbjct: 60 AKRDSINIDPLNYSQLELDKFNEKFEFIETEDQLTAIEKSLHDLTQEKPANRLICGDVGF 119 Query: 633 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ 692 GKTEVA+R A + Q ++VPTTLLA QH F+ RF+ + + +SRF S KE+ Sbjct: 120 GKTEVALRIACATYLSGYQFVIVVPTTLLALQHSRTFKSRFSIFNTSVATLSRFTSLKEK 179 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 QIL + G I ILI TH L + D++F +LG L++DEE +FGV KE + ++ + Sbjct: 180 KQILEGLKNGDIQILIATHSLFKKDIEFNNLGTLVIDEEQKFGVDQKEFLINKHPHIHLF 239 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 +L+ATPIPRTL M++ G++DLS+I TPP+ R++++T+V++Y+ + AI EI RGGQV Sbjct: 240 SLSATPIPRTLQMSLLGLKDLSVIGTPPSNRISIRTYVQKYEQVSFLTAITNEISRGGQV 299 Query: 813 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 + + + NI L +L + +GH +M+E+E+E V F L+ T IIE Sbjct: 300 FIVVPRISNIPFVENELKKLQLDISYGVGHSKMKEKEIEDVFLSFTSGDIQCLISTNIIE 359 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMT 923 +GIDI ANT+II ++ FGL+QL+QLRGRVGRS+ +AYA+L K + Sbjct: 360 SGIDIKNANTLIIFNSNLFGLSQLYQLRGRVGRSNRRAYAYLFHDSEKLIN 410 >UniRef50_B5Y798 ATP-dependent DNA helicase RecG n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y798_COPPD Length = 793 Score = 294 bits (753), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 168/399 (42%), Positives = 242/399 (60%), Gaps = 18/399 (4%) Query: 579 EGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVA 638 +G +F+ +R+ + PF T Q + I +L+DM + M+RL+ GDVG GKT VA Sbjct: 342 QGISFRVERDWIEELERKLPFTLTNAQKRVILEILNDMQKSKPMNRLLQGDVGSGKTVVA 401 Query: 639 MRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAE 698 M A F+A N KQ AV+VPT +LA QHY F + +R+ ++ SA E++++ Sbjct: 402 MFAMFVAAKNGKQSAVMVPTEVLAFQHYMVFSQWAEQFGLRVGLLVGSLSASEKSKVKRY 461 Query: 699 VAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANV--DILTLTA 756 + G++DI++GTH L+Q D FKDLGL+I+DE+HRFGV + + +M + D+L ++A Sbjct: 462 LKSGQLDIVVGTHALIQEDTSFKDLGLVIIDEQHRFGVYQRAALISMDKSKQPDVLVMSA 521 Query: 757 TPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF-VREYDSMVVREAILREILRGGQVYY- 814 TPIPRTL + G D+S+I P R VKTF V E V EA+ RE+ G Q Y Sbjct: 522 TPIPRTLVLTYYGDLDVSVIDELPPNRKPVKTFWVSEKRRSSVYEAVKRELDEGRQAYVV 581 Query: 815 --LYNDVENIQKAA------ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLV 866 L + E+I+ AA E + + + ++ + HG+M + E + VM++F VLV Sbjct: 582 APLIEESESIEAAAATSLYEELCSTFLKDYKVGLLHGKMNKEEKKNVMDEFRKGSLQVLV 641 Query: 867 CTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDA 926 TT+IE G+D+P A ++IE AD FGL+QLHQLRGRV RS +QAY +L+ A T +A Sbjct: 642 STTVIEVGVDVPNATVMVIEGADRFGLSQLHQLRGRVVRSSYQAYCYLIA---NAKTQEA 698 Query: 927 QKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 +RLE++ D GFALA DL +RG GEL+GE Q G Sbjct: 699 VERLESMVKYSD---GFALAEKDLLLRGPGELMGERQHG 734 >UniRef50_Q1D6X0 ATP-dependent DNA helicase RecG n=9 Tax=Bacteria RepID=Q1D6X0_MYXXD Length = 669 Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 155/398 (38%), Positives = 239/398 (60%), Gaps = 14/398 (3%) Query: 577 AKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTE 636 A+ G +F + ++ PF+ T QA+ + + DM +P M+RLV GDVG GKT Sbjct: 218 AEVGISFDVSEPRLAKARNALPFQLTGAQARVVEELCWDMARPEPMNRLVQGDVGSGKTA 277 Query: 637 VAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQIL 696 VAM +A +A+ QVAV+ PT +LA+QH NFR R+ ++S +AK + Q+ Sbjct: 278 VAMVSALIALQAGYQVAVMAPTEILAEQHERNFRKVMEPLGYRVGLVSAAGTAKAKRQVR 337 Query: 697 AEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTA 756 VA G++ + +GTH LLQ+DV F LGL+++DE+HRFGV + + + D+L +TA Sbjct: 338 EAVARGEVHLAVGTHALLQADVSFDRLGLVVIDEQHRFGVLQRHTLMSKGPKPDVLVMTA 397 Query: 757 TPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV-REYDSMVVREAILREILRGGQVYYL 815 TPIPRTL M + G DLS+I P R ++T V + +V E++ ++ +G Q Y + Sbjct: 398 TPIPRTLAMTLYGDLDLSVIDQLPPGRTPIQTRVFNDKQRALVYESVGAQLAKGHQAYVV 457 Query: 816 YN--------DVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 Y D+E+ + E+L ++ P+A++ + HG+M+ E + VM DF +R ++LVC Sbjct: 458 YPLVEESEKLDLEDATRGVEKLRKVFPDAKVGLLHGRMKAEEKDSVMEDFREKRLHLLVC 517 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 TT++E G+D+P A+ +++E A+ FGL+QLHQLRGRVGR ++ L+ A + + Sbjct: 518 TTVVEVGVDVPNASVMVVESAERFGLSQLHQLRGRVGRGAAASFCHLV-----AGSARSW 572 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 + E + +E GF +A DLEIRG GE LG QSG Sbjct: 573 ESAERLTVMEQSSDGFVIAEKDLEIRGPGEFLGTRQSG 610 >UniRef50_B5YEA4 ATP-dependent DNA helicase RecG n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YEA4_DICT6 Length = 778 Score = 282 bits (722), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 162/412 (39%), Positives = 236/412 (57%), Gaps = 17/412 (4%) Query: 582 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 641 FK D E + F +S PF+ T Q + + D+ M RL+ GDVG GKT +A A Sbjct: 333 VFKTDSELVERFLNSLPFKLTKAQEKVWEEIKKDLSSGRPMHRLLQGDVGSGKTVIAALA 392 Query: 642 AFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE 701 A LA DN Q A +VPT +LA+QHY+ + F +RI +++ KE+T I ++AE Sbjct: 393 AILAYDNGYQTAFMVPTEILAEQHYNRLKKIFEPLGIRIALLTSSTPKKEKTYIYLDLAE 452 Query: 702 GKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPR 761 GK+ I+IGTH L+Q +V FK LGL+I+DE+HRFGV + ++ N +L +TATPIPR Sbjct: 453 GKLPIVIGTHALIQEEVTFKKLGLVIIDEQHRFGVIQRAKLWKKGENPHLLVMTATPIPR 512 Query: 762 TLNMAMSGMRDLSII-ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYN--- 817 +L + + G D+SII PP R+ + + + V + +EI++G Q + + Sbjct: 513 SLALVLYGELDISIIDELPPGRKPVITYLFSKRERKKVYSFVEKEIMKGKQAFVVCPLIE 572 Query: 818 -----DVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 + E+ +K E L + P+ +I + HG + E R+M +F + +LV TT+IE Sbjct: 573 ESEKLEAESAKKLYEELKKFFPQFKIGLIHGLVPSEERNRIMEEFQNGEIQILVATTVIE 632 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 G+DIP A+ ++IE A FGLAQLHQLRGRVGR QAY +L+ DA +RL+ Sbjct: 633 VGVDIPNASIMVIEDAHRFGLAQLHQLRGRVGRGSEQAYCFLIA---DLKGEDATERLKV 689 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLY--MELLENA 982 + D GF +A DLEIRG GE G Q G++ ++ L M+L E A Sbjct: 690 MVETND---GFVIANKDLEIRGPGEFFGTRQHGALNSLIVDLTKDMKLFEIA 738 >UniRef50_Q1PZ44 Similar to DNA helicase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ44_9BACT Length = 686 Score = 282 bits (721), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 162/423 (38%), Positives = 248/423 (58%), Gaps = 20/423 (4%) Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 PF T Q + I + DM M+RL+ GDVG GKT VA+ AA +AV N Q + P Sbjct: 258 PFTLTKAQERVIYEIREDMKSDKPMNRLLQGDVGSGKTVVALYAALIAVANGYQATFMAP 317 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 T LLAQQH+ + + VR+ +++ +A + ++A+V++G ID+++GTH +++ Sbjct: 318 TELLAQQHFRTLQKFLSGSQVRVCLLTGSGNATHKKNVIAQVSDGGIDLIVGTHAIIEES 377 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 V FK LGL+++DE+H+FGV + +++ A+ D+L +TATPIPRTL++ + G D+S++ Sbjct: 378 VSFKKLGLVVIDEQHKFGVLQRLKLRKKGASPDVLIMTATPIPRTLSLTLFGDMDISMLD 437 Query: 778 TPPARRLAVKTF-VREYDSMVVREAILREILRGGQVYYLYNDVENIQK--------AAER 828 P R+ VKTF V + + I EI +G QV+ +Y VE+ +K AER Sbjct: 438 EMPPGRIPVKTFWVSKNKEKAAYDFIRGEISKGKQVFVVYPLVEHSEKLDLKSAITEAER 497 Query: 829 L-AELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 L E+ PE ++ + HG+M+ E E+ M DF +R+++LV T IIE GID+P A ++IE Sbjct: 498 LRNEIFPECKVGLLHGKMKSAEKEQAMADFKERRYDILVSTIIIEVGIDVPNATIMVIEH 557 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 A+ FGLAQLHQLRGR+GR Q+Y L A++ D RL + + D GF +A Sbjct: 558 AERFGLAQLHQLRGRIGRGGKQSYCLLFGTPKTALSRD---RLRTMVNTSD---GFKIAE 611 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLY--MELLENA-VDALK-AGREPSLEDLTSQQTE 1003 D +RG GE G Q G E +++ LL+ A DA + R+PSL Q+ + Sbjct: 612 MDFRLRGPGEFFGTRQHGLPELKISNIFHDFSLLQKARKDAFEIVCRDPSLSAEEHQKIK 671 Query: 1004 VEL 1006 ++ Sbjct: 672 TKV 674 >UniRef50_B5YJX3 ATP-dependent DNA helicase RecG n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJX3_THEYD Length = 690 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 155/407 (38%), Positives = 242/407 (59%), Gaps = 20/407 (4%) Query: 568 LLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 +L I R ++G +F + + + F ++ PF+ T Q + IN +L DM +P+ M+RL+ Sbjct: 238 ILLIKQNRICEKGISFNPEGDLLKKFLENLPFKLTSAQQKVINEILEDMKKPIPMNRLLQ 297 Query: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 GDVG GKT VA+ A A++ Q A++ PT +LA+QHY N P+ + + Sbjct: 298 GDVGSGKTVVAVAAMLAAIECGYQAALMAPTEILAEQHYLNISSLLKGLPINTLIYTS-- 355 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 S + + + + G ++++IGTH L+Q D+ FK+LG++++DE+HRFGV + +K Sbjct: 356 SYNKHSNL---ICSGAVNLIIGTHALIQEDIHFKNLGIVVIDEQHRFGVIQRAMLKKKGL 412 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE-YDSMVVREAILREI 806 N D L +TATPIPRT+ + + G D SI+ PA R + T V E + ++ + I E+ Sbjct: 413 NPDTLVMTATPIPRTMALTVYGDLDYSILDELPAGRKPILTKVIEPENKKIIYKMIAEEV 472 Query: 807 LRGGQVYYLY--------NDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 858 GGQVY +Y D+++ + E L +L P+ ++A+ HG+M ++ E +M +F Sbjct: 473 SSGGQVYVVYPLIEESEAMDLKSATQGYEGLKKLFPQYKVALIHGKMSAKQREEIMKEFR 532 Query: 859 HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 + ++LV TT+IE G+D+P A +II A+ FGLAQLHQLRGRVGR + LL Sbjct: 533 NGDIHILVATTVIEVGVDVPNATLMIIIHAERFGLAQLHQLRGRVGRGLRPSKCILL--- 589 Query: 919 PKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 P +T +A+ RL AI + D GF +A D++IRG GEL G +QSG Sbjct: 590 PYKLTEEAKLRLRAIVNYSD---GFKIAEEDMKIRGPGELFGVKQSG 633 >UniRef50_B8E2R9 ATP-dependent DNA helicase RecG n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E2R9_DICTD Length = 779 Score = 280 bits (715), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 156/433 (36%), Positives = 241/433 (55%), Gaps = 20/433 (4%) Query: 582 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 641 F E + F S PF+ T Q + + D+ M RL+ GDVG GKT +A A Sbjct: 334 VFNIQSELVEKFLGSLPFKLTKAQEKVWEEIKKDLSSGRPMHRLLQGDVGSGKTVIAALA 393 Query: 642 AFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE 701 LA DN Q A +VPT +LA+QHY+ ++ F ++I +++ KE+T I ++AE Sbjct: 394 TILAYDNGYQTAFMVPTEILAEQHYNRLKNIFEPLGIKIALLTSSTPKKEKTYIYLDLAE 453 Query: 702 GKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPR 761 GK+ ++IGTH L+Q +V FK LGL+I+DE+HRFGV + ++ +L +TATPIPR Sbjct: 454 GKLPVVIGTHALIQEEVTFKKLGLVIIDEQHRFGVIQRAKLWKKGEAPHLLVMTATPIPR 513 Query: 762 TLNMAMSGMRDLSII-ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYN--- 817 +L + + G D+SII PP R+ + + + V + +EI +G Q + + Sbjct: 514 SLALVLYGELDISIIDELPPGRKPVITYLFSKKERRKVYSFVEKEIEKGKQAFVVCPLIE 573 Query: 818 -----DVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 + E+ +K E L + P I + HG + E R+M +F +LV TT+IE Sbjct: 574 ESEKLEAESAKKLYEELKKFFPRFNIGLIHGLVPREERTRIMEEFQKGEIQILVATTVIE 633 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 G+DIP A+ ++IE AD FGLAQLHQLRGRVGR Q+Y +L+ +A++RL+ Sbjct: 634 VGVDIPNASIMVIENADRFGLAQLHQLRGRVGRGSEQSYCFLIA---DLKGENAKERLKV 690 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP 992 + D GF +A DLEIRG GE G +Q G+++ L+++L ++ + + R Sbjct: 691 MVETND---GFVIANKDLEIRGPGEFFGTKQHGTLDV----LFVDLTKD-MKLFEIARNE 742 Query: 993 SLEDLTSQQTEVE 1005 + E + +Q +E Sbjct: 743 AFEVIKNQNERIE 755 >UniRef50_Q04GL6 ATP-dependent DNA helicase RecG n=3 Tax=Leuconostocaceae RepID=Q04GL6_OENOB Length = 676 Score = 278 bits (711), Expect = 9e-73, Method: Compositional matrix adjust. Identities = 162/397 (40%), Positives = 233/397 (58%), Gaps = 17/397 (4%) Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 G +++ E F P+ T Q + I +L D+ +P+ M+RL+ GDVG GKT VA Sbjct: 230 GREIEYNSEILNDFIAKLPYSLTDAQKKVIQEILLDLKRPIHMNRLLQGDVGSGKTVVAA 289 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRF--ANWPVRIEMISRFRSAKEQTQILA 697 A Q A++VPT +LAQQH N + + A +RIE+++ A + QILA Sbjct: 290 IAMLACYSAGLQAAIMVPTEILAQQHAINLSNLYQSAGLNLRIELLTSGLKAAARRQILA 349 Query: 698 EVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTAT 757 ++ G+IDI++GTH L+Q+DV F +LGL ++DE+HRFGV+ + R++ N DIL +TAT Sbjct: 350 DLESGEIDIVVGTHALIQADVHFYNLGLAVIDEQHRFGVKQRARLREQGQNPDILAMTAT 409 Query: 758 PIPRTLNMAMSGMRDLSII-ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLY 816 PIPRTL + G D+S I P RR + +V+ V + + ++ G QVY + Sbjct: 410 PIPRTLAITAYGEMDVSTIDQLPNGRRPIITKWVKSNQFDNVFDWVKTQLAAGAQVYVVT 469 Query: 817 N--------DVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868 DV+N +RL E + RI + HG++ E ++V+NDF R VLV T Sbjct: 470 PLIEESETLDVQNAVLIYDRLKEELKPYRIGLLHGRLTNDEKQQVINDFSTNRVQVLVTT 529 Query: 869 TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQK 928 T+IE G+DI A ++I AD FG+AQLHQLRGRVGR Q+YA +L PK T Sbjct: 530 TVIEVGVDIKNATIMVILDADRFGIAQLHQLRGRVGRGKKQSYA-ILVSDPK--TQYGID 586 Query: 929 RLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 R+EAI S D GFALA DL++RG G+++G +Q+G Sbjct: 587 RMEAIVSTND---GFALAEKDLKLRGPGDVIGIKQAG 620 >UniRef50_B2KB03 ATP-dependent DNA helicase RecG n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KB03_ELUMP Length = 691 Score = 278 bits (710), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 151/406 (37%), Positives = 237/406 (58%), Gaps = 22/406 (5%) Query: 574 QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFG 633 Q+ ++ + + F ++ FE T Q + IN + DM L M RL+ GDVG G Sbjct: 241 QKTVQKNYTYHIKTNLLTPFKNNLGFELTHAQKKVINEIFKDMQSTLPMTRLLQGDVGSG 300 Query: 634 KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT 693 KT VA+ A LAV+N Q A++ PT +LA+QH+ + V+ +++ K + Sbjct: 301 KTTVALSAMLLAVENKFQAALMAPTEILAEQHFITITNFLKGLDVKTALLTSSVKGKTKE 360 Query: 694 QILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILT 753 ++LA++AEGKIDIL+GTH +++ +V FK+L + +VDE+HRFGV + R++ +D+LT Sbjct: 361 KLLADLAEGKIDILVGTHSIIEDNVVFKNLKMTVVDEQHRFGVEQRTRLRNKAKEIDMLT 420 Query: 754 LTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILR---EILRGG 810 +TATPIPRTL +A G ++S I P R + TF S+ EA + E+ +G Sbjct: 421 MTATPIPRTLALAFYGDLEVSAITELPPGRKPITTF-----SITEGEAYQKAKSELEKGR 475 Query: 811 QVYYLYNDVENIQKAA--------ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRF 862 QVY +Y +E +K E++ + ++ + HGQM+ E E+ M DF ++ Sbjct: 476 QVYIVYPLIEESEKLTVKAVKEDIEKIEGVFAPYKVGMLHGQMKRAEKEKAMADFKDKKT 535 Query: 863 NVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAM 922 +VLV T +IE GID+ A ++I+ A+ FGLA LHQLRGRVGR +++ LL PH + Sbjct: 536 DVLVATPVIEVGIDVKNATVMVIQSAERFGLASLHQLRGRVGRGSEESFC-LLVPH--NL 592 Query: 923 TTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSME 968 +T +++R++ + D GF + D+++RG GE+LG QSG E Sbjct: 593 STVSKERIDILCQTTD---GFKIGERDMQLRGPGEILGTRQSGDFE 635 >UniRef50_Q6MKR1 ATP-dependent DNA helicase RecG n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MKR1_BDEBA Length = 701 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 161/423 (38%), Positives = 245/423 (57%), Gaps = 19/423 (4%) Query: 584 KHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 643 ++ E+ + S PFE T Q + + +D+ + M R+V GDVG GKT V+ AA Sbjct: 258 RNSGEKMRALLQSLPFEMTGAQKRVFTEIKADLEKGHPMHRMVQGDVGSGKTLVSFMAAI 317 Query: 644 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK 703 A ++ Q ++ PT +LA+QH+ N R +R+ ++ A E+ Q+LA + G+ Sbjct: 318 YAAESGYQSCLMAPTEILAEQHFKNARKVLEPLGIRLGLLVGKSKASERKQLLAALGAGE 377 Query: 704 IDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTL 763 ID++IGTH L++ +V+F +LGL+I+DE+HRFGV + +K + L +TATPIPRTL Sbjct: 378 IDLIIGTHALIEDEVQFANLGLVIIDEQHRFGVEQRGVLKNKGNSPHFLVMTATPIPRTL 437 Query: 764 NMAMSGMRDLSIIATPPARRLAVKTFVR-EYDSMVVREAILREILRGGQVYYLYNDVENI 822 M + G D+SII PA R ++T E + +L +I +G Q Y +Y VE Sbjct: 438 AMTVYGDLDVSIIDEMPAGRSPIQTRATFESKRPQALQFMLEQIQKGRQAYIVYPLVEES 497 Query: 823 QK--------AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874 +K E+L EL P+ +I + HG+M+ E ++VM+ F VLV TT+IE G Sbjct: 498 EKIDLKDAVSEYEKLKELYPQLKIGLLHGKMKPDEKDQVMDQFRKNEIQVLVSTTVIEVG 557 Query: 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIA 934 +D+P AN +IIE A+ FGL+QLHQLRGRVGR H+++ L+ + A++ + + R E + Sbjct: 558 VDVPNANIMIIEHAERFGLSQLHQLRGRVGRGEHKSFCILIMGY--AVSEEGKARTEMME 615 Query: 935 SLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSL 994 D GF +A DLE+RG GE +G +QSG GF L + + A+ L+ RE + Sbjct: 616 KTTD---GFKIAEFDLEMRGPGEFMGTKQSG---LSGFKLANLVRDMAI--LQEAREAAF 667 Query: 995 EDL 997 E L Sbjct: 668 EVL 670 >UniRef50_A5GF54 ATP-dependent DNA helicase RecG n=15 Tax=Bacteria RepID=A5GF54_GEOUR Length = 829 Score = 275 bits (703), Expect = 8e-72, Method: Compositional matrix adjust. Identities = 163/400 (40%), Positives = 231/400 (57%), Gaps = 15/400 (3%) Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 A +EG F+ + + PF T Q + ++ + +DM P M RLV GDVG GKT Sbjct: 376 ALEEGIDFQVTHKYTKELLKLLPFSLTNAQRRVLSEIKNDMMAPHPMHRLVQGDVGCGKT 435 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 VA+ AA +AV+N QVA++ PT +LA+QH+ N V++ +++ K + Sbjct: 436 LVALMAALVAVENDYQVAIMAPTEILAEQHFLNIHHWCDALGVKVALLTSSLKGKAKKAA 495 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 L E+A G ++IGTH ++Q V+F+ LGL I+DE+HRFGV + +K N DIL +T Sbjct: 496 LEEIATGNAQVVIGTHAVIQDKVEFRRLGLGIIDEQHRFGVLQRGILKKKGQNPDILVMT 555 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVR-EYDSMVVREAILREILRGGQVYY 814 ATPIPRTL M + G LS+I P R V+T + E V I E+ +G Q Y Sbjct: 556 ATPIPRTLAMTVFGDLSLSVIDELPPGRTPVETRIAFESRRSQVYGVIREEVKKGRQAYV 615 Query: 815 LYNDVENIQ----KAAERLAE-----LVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 865 +Y VE + KAA ++AE + P+ R+ + HG+MR E E VM F + ++L Sbjct: 616 IYPLVEESEKSDLKAAAQMAEQLQSDVFPDLRVGLLHGRMRPDEKEAVMAAFKARETDIL 675 Query: 866 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTD 925 V TT+IE GID+P A ++IE A+ FGL+QLHQLRGRVGR ++ LLT ++ D Sbjct: 676 VATTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRGSDKSRCILLT--TGRLSED 733 Query: 926 AQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 +KRL + S D GF +A DLEIRG G+ LG Q+G Sbjct: 734 GEKRLRVMESTSD---GFRIAEADLEIRGPGDFLGTRQAG 770 >UniRef50_C9RAM3 ATP-dependent DNA helicase RecG n=2 Tax=Clostridia RepID=C9RAM3_AMMDK Length = 685 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 160/399 (40%), Positives = 231/399 (57%), Gaps = 15/399 (3%) Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 +A++ + + D Q F S PF TP Q +A + DM P M RL+ GDVG GKT Sbjct: 236 SAQKPYPCRPDGPLVQQFLASLPFTLTPAQERAWREISRDMESPRPMHRLLQGDVGAGKT 295 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 VA A AV+N Q A++ PT +LA+QH+ N +++ +++ + + + Sbjct: 296 VVAALALVKAVENGLQGALMAPTEILAEQHFLNLHPLLEKIGIKVGLLTGNLKKELRWRQ 355 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 +A +A G ID++IGTH L+Q +V F LGL+++DE+HRFGVR + ++ D+L +T Sbjct: 356 IAAIARGDIDVVIGTHTLIQEEVSFHRLGLVVIDEQHRFGVRQRTILRRKGEAPDVLVMT 415 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT-FVREYDSMVVREAILREILRGGQVYY 814 ATPIPRTL + + G DLS+I + P R VKT +++ V I +E +G Q ++ Sbjct: 416 ATPIPRTLALTLYGDLDLSVIDSLPPGRQPVKTIWIKPSALPRVYNFIRQEAAQGNQAFF 475 Query: 815 LYNDVE-----NIQ---KAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLV 866 + +E N Q K AE L + PE +I + HG+++ E ERVM F +LV Sbjct: 476 VCPLIEESEELNAQAASKLAEELKKFFPEFQIGLLHGRLKLEEKERVMAAFRSGEIKLLV 535 Query: 867 CTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDA 926 T+++E G+D+P A ++I AD FGLAQLHQLRGRVGRS +Y L+ +T +A Sbjct: 536 TTSVVEVGVDVPNATVMVIYDADRFGLAQLHQLRGRVGRSDKPSYCILVA---DKVTPEA 592 Query: 927 QKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 Q RL+A +L D GFALA DL IRG GE G QSG Sbjct: 593 QARLKAFTNLRD---GFALAEEDLRIRGPGEFFGTRQSG 628 >UniRef50_B6YQA3 ATP-dependent DNA helicase RecG n=3 Tax=Bacteroidales RepID=B6YQA3_AZOPC Length = 707 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 157/398 (39%), Positives = 236/398 (59%), Gaps = 17/398 (4%) Query: 579 EGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVA 638 +GF FK E + ++ PFE T Q + +N + +M M+RL+ GDVG GKT +A Sbjct: 255 DGFRFKEIGENFYFLKNNLPFELTTAQKRVVNEIWKNMNTGKQMNRLLQGDVGSGKTLIA 314 Query: 639 MRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAE 698 + + LA DN Q A++VPT +LA QHY+ +++ +++ K + ++L + Sbjct: 315 LLSILLATDNGFQGAIMVPTEVLAIQHYETISRMLNGSAIKVSLLTGSTKNKLREEMLPK 374 Query: 699 VAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRAN-VDILTLTAT 757 V G+I ILIGTH L++ V+F +LGL++VDE+HRFGV + ++ +N +L +TAT Sbjct: 375 VKSGEIQILIGTHALIEDSVEFNNLGLVVVDEQHRFGVTQRAKLWNKNSNPPHVLVMTAT 434 Query: 758 PIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSM--VVREAILREILRGGQVYYL 815 PIPRTL M + G D+SII P R V T+ R YD + E + +EI +G QVY + Sbjct: 435 PIPRTLAMTIYGDLDVSIIDELPPGRKPVDTYHR-YDEKRDKIYEYVRKEIQKGKQVYIV 493 Query: 816 YN--------DVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 Y D+ N+Q + ++++ PE I + HGQM+ E ++ M F ++V Sbjct: 494 YPLIEENEKIDLTNLQDGFQAVSKVFPEYNICMVHGQMKPEEKKQEMQKFLSGEAQIMVA 553 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 TT+IE GID+ A+ +II+ A+ FGL+QLHQLRGRVGRS QA L+T H ++ DA+ Sbjct: 554 TTVIEVGIDVRNASVMIIKNAERFGLSQLHQLRGRVGRSTEQAVCILMTNH--ELSEDAR 611 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 KR I + + GF +A DL++RG G L G +QSG Sbjct: 612 KR---ITIMTNFNNGFIIAEEDLKLRGPGSLNGIKQSG 646 >UniRef50_B3EMY0 ATP-dependent DNA helicase RecG n=12 Tax=Chlorobiaceae RepID=B3EMY0_CHLPB Length = 719 Score = 272 bits (695), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 161/382 (42%), Positives = 226/382 (59%), Gaps = 16/382 (4%) Query: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655 S PF T Q +A+ + D+ + M+RL+ GDVG GKT VAM A LA DN Q A + Sbjct: 286 SLPFVMTEAQKKAVREIYRDLRSGIRMNRLLQGDVGSGKTLVAMFAMALAADNGLQAAFM 345 Query: 656 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 715 PT +LA QHY + +RI +S + AKE+ +L + +G++ IL+GTH +++ Sbjct: 346 APTEILAFQHYMVLKKNEGALGLRIGFLSGRQKAKERRDVLDRLEDGRLHILVGTHAVIE 405 Query: 716 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 775 V+FK LGL ++DE+HRFGV ++ ++ + IL +TATPIPRTL M + G D+++ Sbjct: 406 EGVRFKKLGLAVIDEQHRFGVLQRKALQDKAGSPHILLMTATPIPRTLAMGVYGDLDVTV 465 Query: 776 IATPPARRLAVKTFVREYDSMVVREAILR-EILRGGQVYYLYNDVENIQKAAERLA---- 830 I P R V T +R A+LR EI +G Q Y +Y VE +K + A Sbjct: 466 IDQLPFGRKRVVTRMRSERQKNEVLAVLRQEIEKGRQAYIVYPLVEESKKIDLKAATESF 525 Query: 831 -----ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 885 EL+P RI + HGQMR E E VM F ++LV TT+IE G+D+P A+ ++I Sbjct: 526 LQLRDELLPGLRIGLLHGQMRSEEKESVMERFRSGTLDLLVGTTVIEVGVDVPNASVMVI 585 Query: 886 ERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFAL 945 E A+ FGLAQLHQLRGRVGR Q+Y +LL A+ DA++RL A+ D GF L Sbjct: 586 EHAERFGLAQLHQLRGRVGRGAEQSYCFLLHA---AVGGDARERLAAMERNHD---GFRL 639 Query: 946 ATHDLEIRGAGELLGEEQSGSM 967 + D +RG G +LG+EQSG+M Sbjct: 640 SEIDASLRGTGNVLGKEQSGTM 661 >UniRef50_C8PD65 DNA helicase RecG n=2 Tax=Lactobacillus RepID=C8PD65_9LACO Length = 673 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 154/404 (38%), Positives = 237/404 (58%), Gaps = 15/404 (3%) Query: 571 IYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDV 630 +YA G A K+D +S F+ + DQ QAIN +L+D+ M+RL+ GDV Sbjct: 227 LYANDQKNSGIAKKYDSSAINELKESINFQLSDDQIQAINEILADLASAKRMNRLLQGDV 286 Query: 631 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAK 690 G GKT VA+ A F + QVA++VPT +LAQQH + VR +++ Sbjct: 287 GSGKTIVAVFAIFACITAGYQVALMVPTEILAQQHMNKIVAILEPLGVRCALLTSSTKLN 346 Query: 691 EQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVD 750 E+ +I E+ +G I+++IGTH ++Q V FK LGL+I+DE+HRFGV ++++ VD Sbjct: 347 EKKEIYRELKDGIINLVIGTHAIIQDPVIFKKLGLVIIDEQHRFGVDQRKQLLNKGKMVD 406 Query: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL-RG 809 IL ++ATPIPRTL +++ G +S I P R V ++ DS+ ++ E L +G Sbjct: 407 ILAMSATPIPRTLALSVYGENSVSEIHQMPLGRKKVISYWITSDSLRKLLTLMNEQLEQG 466 Query: 810 GQVYYLY-----ND---VENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR 861 Q+Y + +D ++N + +++A ++A+ HG+M + +M+ F H Sbjct: 467 FQIYVVAPLIAESDKLHLKNAETLYKKMALYFGSDKVALLHGKMASSQKSDIMDAFIHGS 526 Query: 862 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA 921 +L+ T++IE G+D+ AN +II ADHFGL+QLHQLRGR+GR Q+Y + PK Sbjct: 527 IKILITTSVIEVGVDVANANMMIIFNADHFGLSQLHQLRGRIGRGSTQSYC-IFVSDPK- 584 Query: 922 MTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 T A+KRL+ I++ +D GFALA DL++RG G+L G+ QSG Sbjct: 585 -TDSAKKRLKIISTCDD---GFALAREDLKLRGEGDLFGQAQSG 624 >UniRef50_B5Y8L2 Transcription-repair-coupling factor (Trcf) (ATP-dependent helicase mfd), putative n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8L2_COPPD Length = 849 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 189/667 (28%), Positives = 319/667 (47%), Gaps = 53/667 (7%) Query: 418 ASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAEL 477 AS R+L+ G F ++ + + + LG +V RR +L + L Sbjct: 194 ASGEKRFLVHGRIRMPF--SLDGFDIHIDREGLGWKVGHRR----------SLELSWHGL 241 Query: 478 HIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAE 537 +G+PV+H++ GVG Y G+ +E Y ++Y D + VP+ + R Sbjct: 242 KVGEPVLHVDRGVGVYDGIEYVEGK----PYFSISY-KDGHVLVPLERSQKLVR----VP 292 Query: 538 ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSF 597 + LG WSR + ++ + + L + + Q+ + + F + D E F SF Sbjct: 293 STMSIDSLGPARWSRKSRALQQRALKMRSFLENRFKQKKSTQSFTIEPDEEIESAFAQSF 352 Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 FE T DQ QA + + + P + L+ G+ G GKTEV MRAA + ++VP Sbjct: 353 QFEETSDQKQATEELHAWLAIPHPEEALIIGESGVGKTEVLMRAAVAVASAGYKAVIVVP 412 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 T +L Q+ + +R + + +L++ DIL+GTH LL+ Sbjct: 413 TRVLVDQYMAAYSERIQSCGL----------------LLSDDPALPWDILVGTHSLLKKQ 456 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 + L L+I DEE +FGV HK + V ++ +ATPIPRT +A G L + Sbjct: 457 LYDDKLALVIFDEEQKFGVTHKNWFQEHFPWVKVIFSSATPIPRTFFLARRGYVKLIRMH 516 Query: 778 TPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEAR 837 P R V F EY +VR+ + E+ RGG V Y++ +E I A L ++ +A Sbjct: 517 ELPYGRQKVTVFADEYSPDLVRKVLSDELDRGGLVIYIHPTIEGIDLRALELQQMFLDAE 576 Query: 838 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 897 I + H +M ++ ++ + + ++LV TTI+E G+D+P ANTI++E A H G++Q++ Sbjct: 577 IEVLHARMTDKRIKSIFKKLQEGKIDILVATTIMEAGVDLPIANTIVVEDATHLGVSQMY 636 Query: 898 QLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGE 957 QL+GRVGR+ + YAW L +P + + R+ + L + +ALA D RG GE Sbjct: 637 QLKGRVGRNSVKGYAWFL--YPPTASPATRSRIHSTVKLLNYSDSYALAELDTRYRGIGE 694 Query: 958 LLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFI 1017 + G Q G ++ + V A+ A E + + ++ ++M +P+ + Sbjct: 695 IFGIRQHGLVK-----------QEDVFAVDALLEQTYREEETEIVSWPIKMN--IPEWIL 741 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 P+ R + K I A TE EL ++ + D G +P+ ++ L + L+ K GI Sbjct: 742 PEPE-RSNLLKDILDADTERELMQLFLMFKDLVGHIPEESKALFAYSLLKVLGNKRGITM 800 Query: 1078 LEGNEKG 1084 ++ N +G Sbjct: 801 IKFNSRG 807 Score = 43.9 bits (102), Expect = 0.038, Method: Compositional matrix adjust. Identities = 28/88 (31%), Positives = 49/88 (55%), Gaps = 6/88 (6%) Query: 125 GHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDF 184 G L++ KG + D + + L GY VD + ++A RG +LD++ S+ YRLDF Sbjct: 17 GDPLLITKGTPM--DVVLSFLKLTGYTRVDFCYDSFQWAKRGFVLDIY---SDELYRLDF 71 Query: 185 -FDDEIDSLRVFDVDSQRTLEEVEAINL 211 +D ++S+R+ D ++Q ++ E L Sbjct: 72 DEEDRVESIRIVDSETQMSIRRTEYATL 99 >UniRef50_C4FT75 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FT75_9FIRM Length = 678 Score = 270 bits (691), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 148/404 (36%), Positives = 235/404 (58%), Gaps = 18/404 (4%) Query: 574 QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFG 633 Q + G +D +Q + + P+E T Q Q +N + D+ M R+V GDVG G Sbjct: 229 QHETEPGIQIHYDNDQLKTWIGRLPYELTQAQKQVVNEICRDLMAQHPMRRMVQGDVGSG 288 Query: 634 KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT 693 KT VA A ++ Q A++ PT +LA+QH +F FA+ + +++ +AK + Sbjct: 289 KTLVAFLAILASLSGGFQSALMAPTEILAKQHAQSFNQLFASMGIEAALLTSAMTAKAKQ 348 Query: 694 QILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERI--KAMRANVDI 751 +L +A G+I ++IGTH L+Q VKFK LGL+I+DE+HRFGV ++ + K + V++ Sbjct: 349 AVLDGLANGQIQVVIGTHALIQETVKFKQLGLVIIDEQHRFGVGQRQALVDKNDKIAVNL 408 Query: 752 LTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT-FVREYDSMVVREAILREILRGG 810 L +TATPIPR+L M + G +S I P R + T +++E + + + +E+ G Sbjct: 409 LQMTATPIPRSLAMTLYGEMHVSTIDQLPKGRQPITTRWLKEDQLEELEDHVAQELEAGH 468 Query: 811 QVYYL---------YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR 861 QVYY+ +EN+ + A+RLA+ P ++ + HGQ+ + E E VM+ F + Sbjct: 469 QVYYVLPLIESSEHLEQIENVLEVADRLADRFPSFKVDVLHGQLNKEEQEAVMDRFKQNQ 528 Query: 862 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA 921 +LV TT++E G+D+P A ++I+ A+ FGLAQLHQLRGRVGRS +Y +L+ Sbjct: 529 VQILVATTMVEVGVDVPNATIMVIQSAERFGLAQLHQLRGRVGRSQLASYCYLIG---SP 585 Query: 922 MTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 T ++RL+ + +D GF ++ DL+IRG G+L+G QSG Sbjct: 586 STEQGKERLKIMVDHQD---GFLISREDLKIRGMGDLMGRSQSG 626 >UniRef50_C7NDD0 ATP-dependent DNA helicase RecG n=19 Tax=Bacteria RepID=C7NDD0_LEPBD Length = 689 Score = 270 bits (690), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 150/441 (34%), Positives = 254/441 (57%), Gaps = 21/441 (4%) Query: 575 RAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGK 634 +A K + + ++ F S +E T Q + I + S++ ++RL+ GDVG GK Sbjct: 242 KANKNLYKLEDNKSLVSKFIKSLDYELTKAQKRVIKEIYSELKAGKIVNRLIQGDVGSGK 301 Query: 635 TEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQ 694 T V+ V+N+ Q ++ PT +LA QHY D F N +R+E+++R K++ + Sbjct: 302 TIVSFIMLLYMVENNYQGVIMAPTEILATQHYLGIVDEFMNLDIRVELLTRSVKGKKKEK 361 Query: 695 ILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTL 754 +L E+ EG +DI+IGTH L++ +V FK+LGL+++DE+HRFGV ++ ++ +++ + Sbjct: 362 LLNEIKEGLVDIVIGTHSLIEDNVIFKNLGLIVIDEQHRFGVTQRKLLRDKGNIANLIVM 421 Query: 755 TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT--FVREYDSMVVREAILREILRGGQV 812 +ATPIPR+L + + G D+SII PA R +KT E D + + +++ G QV Sbjct: 422 SATPIPRSLALTIYGDLDVSIIDELPAGRSPIKTKWIQNEIDRQKMYNFMEKKMKDGRQV 481 Query: 813 YYLYNDVE-----NIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNV 864 Y + +E N++ A E E + P +I + HG+ +E ++VM F + ++ Sbjct: 482 YIVSPLIEESESLNVKSAQETYEEYISIFPNRKIGLMHGRQTYKEKQKVMEQFKNHELDI 541 Query: 865 LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTT 924 LV TT+IE G+++P A+ ++I A FGL+ LHQLRGRVGR +Q+Y +L + ++T Sbjct: 542 LVSTTVIEVGVNVPNASIMVIRDAQRFGLSSLHQLRGRVGRGKYQSYCFLESETTNEIST 601 Query: 925 DAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVD 984 KRLE +E+ GF +A DL++R +GE+LG QSG + L+ ++++N V Sbjct: 602 ---KRLEV---MEETTDGFKIAEEDLKLRNSGEILGTRQSGVSDM----LFTDIVKN-VK 650 Query: 985 ALKAGREPSLEDLTSQQTEVE 1005 +K R+ +E L ++E Sbjct: 651 EIKFVRDFVMEYLKKNDGKIE 671 >UniRef50_B1C9D0 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C9D0_9FIRM Length = 675 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 148/398 (37%), Positives = 232/398 (58%), Gaps = 19/398 (4%) Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F + PF+ TP Q + I+ + D+ + M+RLV GDVG GKT VA+ + +LA+ N Q Sbjct: 247 FMNLLPFKLTPSQNKVISEIEEDLMSGVKMNRLVQGDVGSGKTIVALYSIYLAITNGYQA 306 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 A PT +LA QH+++ ++ F V +E++ +AKE+ + + G+ I++GTH Sbjct: 307 AFCAPTKILAMQHFESIKEIFDKLDVNVELLHSKMTAKEKREAYERIESGESKIIVGTHA 366 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 + + VK+ +LGL ++DE+HRFGV + + +V L ++ATPIPRTL +++ D Sbjct: 367 VFSTKVKYNNLGLAVIDEQHRFGVAQRGFLDKKGESVHTLVMSATPIPRTLTLSIYKDLD 426 Query: 773 LSIIATPPARRLAVKTFVREYDSM--VVREAILREILRGGQVYYLYNDVENIQ-KAAE-- 827 +SII P R +KT+ ++Y + R A L+EI + QVY + +++ +AAE Sbjct: 427 VSIIDKKPGNRKEIKTYFKDYSYYDRIYRFA-LKEIAKKNQVYVVCPSIDSDDLEAAEKT 485 Query: 828 ---RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 A+ HG+M E E E++M DF+ + L+ T++IE GID A II Sbjct: 486 YKKLKKTYFKNVNAALIHGKMDEEEKEKIMEDFYKGEISALIATSVIEVGIDSKDATLII 545 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 IE AD FGLA LHQLRGRVGR+ +Y LL+ +P ++K +E + L GF Sbjct: 546 IEGADRFGLASLHQLRGRVGRNDKDSYCILLSENP------SKKSIERLNFLSKNNDGFE 599 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENA 982 +A DL+ RG+G++LG QSG G+++Y +L+EN+ Sbjct: 600 IALFDLKTRGSGDILGYRQSGKG---GYNIY-KLIENS 633 >UniRef50_C0BP78 Transcription factor CarD n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BP78_9BACT Length = 681 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 195/686 (28%), Positives = 325/686 (47%), Gaps = 62/686 (9%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT--DQMVMNLADWETL 76 L L G+A + + + P VLI D + A + +++ F D+++ A ++ Sbjct: 25 LNGLAGSALSFAITALFNESKVPFVLILEDKETAAYVLNDLESFIGEDRVLFYPASYKK- 83 Query: 77 PYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPV-NTLMQRVCPHSFLHGHALVMKKGQR 135 PY I R L + + + IV + ++V L + L +K+G+ Sbjct: 84 PYQHSQTDNANILLRAEVLQRFGKKGKPLCIVSYPEAIFEKVIQKKTLEKNTLNLKQGEL 143 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 +S D L L G++ VD V GE++ RG ++D+F + PYR++FF +E++S+R F Sbjct: 144 ISLDFLNESLFEYGFKRVDFVSSPGEFSVRGGIVDVFSYAYDHPYRIEFFGEEVESIRTF 203 Query: 196 DVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPA 255 D+ SQR++ + E I+++P DT ++D Sbjct: 204 DIVSQRSIAKQEEISIIP--------------NVTQTDTLTKRQD--------------- 234 Query: 256 GIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLL 315 FFS F+ L+ G L+ E + + +F+ ++ + Sbjct: 235 --------FFS------FTDKKTTVLIRKPGVLKQKIESLYKEAVLKFDT--LEGEIAQI 278 Query: 316 PPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALR 375 PP++L+++ ELF L+ V L+++ A A LG QK D A+ +D Sbjct: 279 PPENLYVQSKELFGALEKHQCVFLESQ----PAEIAQLGIQKQQD---SAENNILIDFKG 331 Query: 376 KFLETFDGPVVFSVESEGRREALGE---LLARIKIAPQRIMRLDEASDRGR-YLMIGAAE 431 F+ +E + G L + +R + EA+++ Y + Sbjct: 332 TDQPAFNKKFPLIIERLAQNNLKGTNNYLFCASEQQAKRFSDIFEAAEKEVPYKTVVLPI 391 Query: 432 H-GFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 H GF + +LA + ++ ER + + + L +L IG V H++HG+ Sbjct: 392 HRGFEIPLLHLACYTDHEIF-ERYHKFHIKNGFDKKEAISLSELNKLEIGDYVTHIDHGI 450 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW 550 G++ G+ + G E + L+Y LYV + SLH I+++ G ++KLG AW Sbjct: 451 GKFGGLQKIAVEGKKQEAIKLSYGERDVLYVSIHSLHKIAKFNGKDGSPPKIYKLGSGAW 510 Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 + ++K +V+ +A +L+ IYA+R ++GF + D SF +E TPDQ A Sbjct: 511 KKVKEKTKSRVKKLAFDLIQIYAKRRLQKGFQYAADSSLQHELEASFLYEDTPDQLTATE 570 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 + DM MDRL+CGDVGFGKTEVA+RAAF AVDN KQVA+LVPTT+LA QH++ Sbjct: 571 DIKKDMESERPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAILVPTTILAYQHFNTLT 630 Query: 671 DRFANWPVRIEMISRFRSAKEQTQIL 696 R + PV ++ ++RFRS+KE+ I Sbjct: 631 ARLKDMPVSVDYLNRFRSSKEKKDIF 656 >UniRef50_Q55681 ATP-dependent DNA helicase recG n=5 Tax=Cyanobacteria RepID=RECG_SYNY3 Length = 831 Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 146/404 (36%), Positives = 235/404 (58%), Gaps = 16/404 (3%) Query: 572 YAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVG 631 Y Q+ ++ F E + F D PF T Q + +N +L D+ +P M+RLV GDVG Sbjct: 377 YEQKQQQQSAIFTPHGELLEKFSDLLPFRLTQAQQRVVNEILQDLNKPSPMNRLVQGDVG 436 Query: 632 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKE 691 GKT V + A A+ Q A++ PT +LA+QHY F + +E+++ + Sbjct: 437 SGKTVVGVFAILAALQGGYQAALMAPTEVLAEQHYQKLVSWFNLLYLPVELLTGSTKTAK 496 Query: 692 QTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDI 751 + +I A+++ G++ +L+GTH L+Q V F+ LGL+++DE+HRFGV+ + ++ A + Sbjct: 497 RREIHAQLSTGQLPLLVGTHALIQETVNFQRLGLVVIDEQHRFGVQQRAKLLAKGNAPHV 556 Query: 752 LTLTATPIPRTLNMAMSGMRDLSII-ATPPARRLAVKTFVREYDSMVVREAILREILRGG 810 L++TATPIPRTL + + G ++S I PP R+ + + + + E I RE+ +G Sbjct: 557 LSMTATPIPRTLALTLHGDLEVSQIDELPPGRQPIHTSVITAKERPQMYELIRREVAQGR 616 Query: 811 QVYYLYNDVE-----NIQKAAER----LAELVPEARIAIGHGQMRERELERVMNDFHHQR 861 QVY ++ +E +I+ A E ++ P I + HG+++ E E + F ++ Sbjct: 617 QVYIIFPAIEESEKLDIKAAVEEHKYLTEKIFPNFNIGLLHGRLKSAEKEAALTAFREKQ 676 Query: 862 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA 921 ++V TT+IE G+D+P A ++IE A+ FGL+QLHQLRGRVGR HQ+Y L+T + Sbjct: 677 TEIIVSTTVIEVGVDVPNATVMVIENAERFGLSQLHQLRGRVGRGSHQSYCLLVT---NS 733 Query: 922 MTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 + DA++RL + +D GF +A DL +RG GE LG +QSG Sbjct: 734 KSNDARQRLGVMEQSQD---GFFIAEMDLRLRGPGEFLGTKQSG 774 >UniRef50_C1TK34 ATP-dependent DNA helicase RecG n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TK34_9BACT Length = 687 Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 154/379 (40%), Positives = 226/379 (59%), Gaps = 15/379 (3%) Query: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655 S PFE T DQ++ + + DM + M+RL+ GDVG GKT VA A AVD Q A++ Sbjct: 258 SLPFELTEDQSRVLAEIGRDMSSDVTMNRLLQGDVGSGKTAVATLAMMQAVDGGTQAALM 317 Query: 656 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 715 VPT++LAQQH R V++ +++ SAKE+ +L E+AEG ID++IGTH ++Q Sbjct: 318 VPTSILAQQHAIRLRSFLEPHGVKVGLLTGGLSAKERKALLKEIAEGSIDLVIGTHAVIQ 377 Query: 716 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 775 DV F+ LGL+++DE+HRFGV + + +L +TATPIPRTL +++ G +S+ Sbjct: 378 EDVVFRRLGLIVIDEQHRFGVLQRGALGGKGEMPHVLVMTATPIPRTLALSVYGDLSVSV 437 Query: 776 IATPPARRLAVKT-FVREYDSMVVREAILREILRGGQVYYLYNDVE-----NIQKAAERL 829 I T P R+ VKT ++ ++ + + E+ RG +++++ +E N + ER Sbjct: 438 IRTMPEGRIPVKTRWIGDHKVDDLYGFLDSEMDRGRRIFWVCPLIEESEHLNARPLEERF 497 Query: 830 AELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 LV R+++ HG+M E VM +F +L TT+IE G+D+P A ++IE Sbjct: 498 DFLVRRFGSERVSMLHGRMSMEERRSVMEEFASGESPLLASTTVIEVGVDVPEATVMVIE 557 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 A+ FGL+QLHQLRGRVGRS Q++ +LL K T D +RLEAI S D GF +A Sbjct: 558 GAERFGLSQLHQLRGRVGRSDEQSWCFLLG---KPGTQDGNRRLEAICSSSD---GFEVA 611 Query: 947 THDLEIRGAGELLGEEQSG 965 D+ IRG GE+ G Q G Sbjct: 612 EADMAIRGPGEICGTRQHG 630 >UniRef50_B9L2A2 ATP-dependent DNA helicase RecG n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L2A2_THERP Length = 807 Score = 265 bits (677), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 172/438 (39%), Positives = 242/438 (55%), Gaps = 27/438 (6%) Query: 577 AKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTE 636 A+ G A DR + F S PF+ T Q +A+ +L+D+ +P M RL+ GDVG GKT Sbjct: 355 AQAGIAIPIDRAFLETFLASLPFQLTGAQRRALEEILADLAEPHPMSRLLQGDVGSGKTV 414 Query: 637 VAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP----VRIEMISRFRSAKEQ 692 VA AA L Q A+L PT +LA+QH+ + P + +++ +++ Sbjct: 415 VAAAAALLVHRAGYQAAILAPTEILAEQHFRTLTRLYHGLPGGERPLVALLTGSTPERDR 474 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 ILA +A G I I++GTH LL+ V+F+ L L ++DE+HRFGV + +++ N +L Sbjct: 475 GSILAGLASGTISIIVGTHALLEERVQFRRLALAVIDEQHRFGVLQRHTLRSKGENPHVL 534 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV-VREAILREILRGGQ 811 +TATPIPR+L + + G DLSII P R VKT+V E + REI +G Q Sbjct: 535 VMTATPIPRSLALVLHGDLDLSIIDELPPGRQPVKTYVVPGRKRTQAYEFVRREIEKGHQ 594 Query: 812 VYYLYNDVENIQKAAERLA---------ELVPEARIAIGHGQMRERELERVMNDFHHQRF 862 + + VE + R A E+ P+ R+ + HG+M RE E VM F Sbjct: 595 AFIICPLVEESEAIEARAATAEYERLQREVFPDLRLGLLHGRMSPREKEDVMTRFRDGEL 654 Query: 863 NVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAM 922 ++LV T ++E GIDIP A I+IE A+ FGLAQLHQ RGRVGR +Y L++ A Sbjct: 655 HILVSTAVVEVGIDIPNATVILIEGAERFGLAQLHQFRGRVGRGSAPSYCLLVS---DAS 711 Query: 923 TTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENA 982 T A++RLEA+AS D GF LA DLE+RG GE LG QSG + + F+ +L Sbjct: 712 TETARQRLEAVASTTD---GFRLAEIDLELRGPGEFLGTRQSG-LPNLRFASLADL---- 763 Query: 983 VDALKAGREPSLEDLTSQ 1000 L+A R + EDL Q Sbjct: 764 -STLQAARR-TAEDLLRQ 779 >UniRef50_D2MQ66 Putative ATP-dependent DNA helicase RecG n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ66_9FIRM Length = 667 Score = 265 bits (677), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 148/388 (38%), Positives = 220/388 (56%), Gaps = 22/388 (5%) Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 Q PFE T DQ ++ DM M+RLV GDVG GKT +A + V + Sbjct: 237 QALIQQIPFELTTDQKNTFFEIVQDMRSMKKMNRLVQGDVGSGKTVIAGMSLLACVSSGY 296 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Q A+L PT +LA+QH+ + F R+ ++ S E+ IL ++ +GKI ++IGT Sbjct: 297 QCALLAPTEILARQHFQTMKSLFPKESQRMALLYSGLSGSEKESILTDLKKGKIQMVIGT 356 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H LLQS VKF+ LGL++VDE+ RFGV+ +E +K+ +VD L +TATPIPRTL ++ G Sbjct: 357 HSLLQSGVKFQKLGLVVVDEQQRFGVQQREFLKSQSNDVDFLVMTATPIPRTLASSLLGG 416 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL----RGGQVYYLYN--------- 817 D+S I + P R A T E +S ++L+E+ +G Q+Y + Sbjct: 417 MDVSTIHSMPQGRKAPVTKRLEENSF---HSVLKEVQALLDKGHQLYVICAAVNANESGL 473 Query: 818 DVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 877 V N+ LA++ P +A+ HGQM+ +E E +MN F+ + +LV TT++E G++ Sbjct: 474 KVRNVYDTQRNLAKVFPNYTVALIHGQMKSQEKEAIMNQFYSNQIQILVSTTVVEVGMNC 533 Query: 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 A +II +D FGL+ LHQLRGR+ R + Q Y WLL+ +T + RLE + + Sbjct: 534 VNATGMIIYDSDRFGLSTLHQLRGRIQRGNDQGYCWLLSRSQDELTIE---RLEVLVKSD 590 Query: 938 DLGAGFALATHDLEIRGAGELLGEEQSG 965 D GF ++ DL +RG G++LG QSG Sbjct: 591 D---GFYISEQDLRLRGPGDILGLRQSG 615 >UniRef50_B1L291 ATP-dependent DNA helicase RecG n=1 Tax=Clostridium botulinum A3 str. Loch Maree RepID=B1L291_CLOBM Length = 662 Score = 265 bits (677), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 144/412 (34%), Positives = 237/412 (57%), Gaps = 41/412 (9%) Query: 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 +YQ D PF+ T DQ +AI+ +L+ M + ++ L+ DVG GKT +A + V+N Sbjct: 238 EYQKLLDKLPFKLTQDQIKAIDTILNQMQKNKKVNTLLTADVGAGKTVIAFLIIIILVEN 297 Query: 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 708 Q ++ PT++LA+QH++ F + P + I+ A E+ +IL + EG +++I Sbjct: 298 GYQGVLMAPTSVLAKQHFNEFNKLLCDTPFKACFINGTLKASEKKEILQGIKEGVYNVII 357 Query: 709 GTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMS 768 GTH ++Q DVKFK LG+ ++DEEHRFGV + + N+ +T++ATPIPR+L + M Sbjct: 358 GTHSVIQKDVKFKKLGVAVIDEEHRFGVSQRAVLLEKTNNIHYVTMSATPIPRSLALTMY 417 Query: 769 GMR-DLSIIATPPARRLAVKTFV-----REYDSMVVREAILREILRGGQVYYL------- 815 G ++ I T P R +KT + + Y+ M L+EI +G Q Y++ Sbjct: 418 GDNIEIVTIKTMPNGRKPIKTALINNKKKAYNFM------LKEIKKGHQCYFVCPLIEKS 471 Query: 816 -YNDVENIQKAAERLAEL-----VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 869 +ENI + E+ + ++++ G+M+E ++++ +N F + +++ TT Sbjct: 472 YCESMENIDSIEDIYKEMNTFFKNKDIKLSMVTGKMKEEQIDKEINKFKNNETQIIIATT 531 Query: 870 IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKR 929 +IE GI++P A TI+I A+ FGLAQLHQLRGRVGRS Q+Y L+ ++ +R Sbjct: 532 VIEVGINVPNATTIVINNAERFGLAQLHQLRGRVGRSSLQSYCILI-------SSKNSER 584 Query: 930 LEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLEN 981 L+ + + D GF +A DL++RG+G L+GEEQSG E +++L+ N Sbjct: 585 LQVMTTTND---GFIIANKDLKLRGSGNLIGEEQSGKNE------FVQLINN 627 >UniRef50_Q54900 ATP-dependent DNA helicase recG n=129 Tax=Bacilli RepID=RECG_STRPN Length = 671 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 152/401 (37%), Positives = 236/401 (58%), Gaps = 18/401 (4%) Query: 575 RAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGK 634 R G +E+ S PF T Q +++ +L+DM M+RL+ GDVG GK Sbjct: 227 RVQGSGLVLNWSQEKVTAVKVSLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSGK 286 Query: 635 TEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQ 694 T VA A F AV Q A++VPT +LA+QH+++ ++ F N +++ +++ A E+ + Sbjct: 287 TVVAGLAMFAAVTAGYQAALMVPTEILAEQHFESLQNLFPN--LKLALLTGSLKAAEKRE 344 Query: 695 ILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTL 754 +L +A+G+ D++IGTH L+Q V++ LGL+I+DE+HRFGV + ++ N D+L + Sbjct: 345 VLETIAKGEADLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLMM 404 Query: 755 TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT-FVREYDSMVVREAILREILRGGQVY 813 TATPIPRTL + G D+SII PA R + T +++ V + EI +G QVY Sbjct: 405 TATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQVY 464 Query: 814 YLYN--------DVENIQKAAERL-AELVPEARIAIGHGQMRERELERVMNDFHHQRFNV 864 + D++N +E L +A +A+ HG+M+ E +++M DF ++ ++ Sbjct: 465 VISPLIEESEALDLKNAIALSEELTTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTDI 524 Query: 865 LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTT 924 LV TT+IE G+++P A +II AD FGL+QLHQLRGRVGR Q+YA +L +PK T Sbjct: 525 LVSTTVIEVGVNVPNATVMIIMDADRFGLSQLHQLRGRVGRGDKQSYA-VLVANPK--TD 581 Query: 925 DAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 + R+ + + GF LA DL++RG+GE+ G QSG Sbjct: 582 SGKDRMRIMTETTN---GFVLAEEDLKMRGSGEIFGTRQSG 619 >UniRef50_Q7V1U9 ATP-dependent DNA helicase recG n=8 Tax=Prochlorococcus marinus RepID=Q7V1U9_PROMP Length = 818 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 142/402 (35%), Positives = 229/402 (56%), Gaps = 23/402 (5%) Query: 574 QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFG 633 Q++ K+ F K F + PF+ T Q + ++ + SD+ M RL+ GDVG G Sbjct: 373 QKSIKKNFLLKD-------FLNKVPFQLTKSQEKVLDEIKSDLSDLTPMSRLLQGDVGSG 425 Query: 634 KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT 693 KT +A+ + ++ +Q A++VPT +LA QHY N V +E+++ K++ Sbjct: 426 KTIIAIATLLIELEKDQQGALMVPTEVLATQHYKNLIQFLNPLLVSVELLTGNTPQKKRK 485 Query: 694 QILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILT 753 +IL + G +DIL+GTH L + V F LG++++DE+HRFGV + R+ N ++L+ Sbjct: 486 EILTNLKNGMVDILVGTHALFEDKVVFNSLGMVVIDEQHRFGVTQRNRLLNKGDNTNLLS 545 Query: 754 LTATPIPRTLNMAMSGMRDLS-IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 +TATPIPRTL +++ G D+S I PP R + E + + + + EI +G Q Sbjct: 546 MTATPIPRTLALSLYGDLDISQITELPPGRVPITTKIISEEELNKLFKRVENEIDKGKQA 605 Query: 813 YYLYNDVENIQK----AAERLAELVPE-----ARIAIGHGQMRERELERVMNDFHHQRFN 863 Y + +E+ +K +A+++ + + E ++ + HG++ E V+N F + N Sbjct: 606 YVILPLIEDSEKMNLSSAKKIYQYLSEEIFLKNKVGLLHGKLNSEEKNNVINSFVNNEVN 665 Query: 864 VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMT 923 +LV TT+IE GID+P A+ +II ++ FGL+QLHQLRGRVGR +++ +L+T + Sbjct: 666 ILVSTTVIEVGIDVPNASIMIIYNSERFGLSQLHQLRGRVGRGSQKSFCYLVTSENNGL- 724 Query: 924 TDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 KRL LE GF +A DLE+RG G+LLG +QSG Sbjct: 725 --ENKRLRV---LEKSNDGFYIAEKDLELRGPGQLLGYKQSG 761 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=B... 1572 0.0 UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=ce... 1350 0.0 UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 T... 1330 0.0 UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=She... 1268 0.0 UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=P... 1261 0.0 UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Ga... 1247 0.0 UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Bet... 1242 0.0 UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Bur... 1230 0.0 UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xa... 1224 0.0 UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Be... 1222 0.0 UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=G... 1219 0.0 UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Hal... 1200 0.0 UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=bet... 1187 0.0 UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Fir... 1182 0.0 UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Aci... 1179 0.0 UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Pr... 1173 0.0 UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bac... 1172 0.0 UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Del... 1171 0.0 UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Des... 1168 0.0 UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Fr... 1162 0.0 UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bac... 1161 0.0 UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Nat... 1160 0.0 UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moo... 1153 0.0 UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Des... 1152 0.0 UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clo... 1152 0.0 UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=B... 1150 0.0 UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Det... 1147 0.0 UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 1140 0.0 UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic... 1138 0.0 UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Des... 1136 0.0 UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Vei... 1136 0.0 UniRef50_B6ISZ9 Transcription-repair coupling factor n=96 Tax=Al... 1131 0.0 UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Cl... 1130 0.0 UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Ba... 1127 0.0 UniRef50_D2LDK6 Transcription-repair coupling factor n=1 Tax=Rho... 1123 0.0 UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clo... 1123 0.0 UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Sta... 1121 0.0 UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clo... 1119 0.0 UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamil... 1116 0.0 UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Amm... 1114 0.0 UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Pep... 1111 0.0 UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Aci... 1111 0.0 UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Des... 1108 0.0 UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostri... 1108 0.0 UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lac... 1105 0.0 UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Des... 1104 0.0 UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=La... 1103 0.0 UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coproco... 1103 0.0 UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=St... 1103 0.0 UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Car... 1096 0.0 UniRef50_B0U870 Transcription-repair coupling factor n=86 Tax=Al... 1094 0.0 UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Ros... 1094 0.0 UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syn... 1092 0.0 UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 1088 0.0 UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Aci... 1087 0.0 UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamil... 1086 0.0 UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chl... 1083 0.0 UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=The... 1083 0.0 UniRef50_Q6ARL4 Related to transcription-repair coupling factor ... 1078 0.0 UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myx... 1078 0.0 UniRef50_A5V6G5 Transcription-repair coupling factor n=2 Tax=Sph... 1076 0.0 UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lac... 1074 0.0 UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=del... 1072 0.0 UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clo... 1071 0.0 UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttle... 1070 0.0 UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostri... 1066 0.0 UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syn... 1066 0.0 UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotro... 1065 0.0 UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71... 1064 0.0 UniRef50_Q0F085 Transcription-repair coupling factor n=1 Tax=Mar... 1063 0.0 UniRef50_A5EV48 Transcription-repair coupling factor n=2 Tax=Car... 1061 0.0 UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 ... 1061 0.0 UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Fir... 1059 0.0 UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Her... 1057 0.0 UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=The... 1055 0.0 UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostri... 1053 0.0 UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostri... 1050 0.0 UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Bra... 1049 0.0 UniRef50_D2RAQ2 Transcription-repair coupling factor n=6 Tax=Act... 1049 0.0 UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bac... 1048 0.0 UniRef50_A9G788 Transcription-repair coupling factor n=3 Tax=Pro... 1047 0.0 UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostri... 1047 0.0 UniRef50_Q6MGN1 Transcription-repair coupling factor n=2 Tax=Pro... 1044 0.0 UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sph... 1043 0.0 UniRef50_A6NQ58 Putative uncharacterized protein n=1 Tax=Bactero... 1040 0.0 UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Aci... 1040 0.0 UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostri... 1040 0.0 UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clo... 1039 0.0 UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax... 1039 0.0 UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamil... 1036 0.0 UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Vei... 1032 0.0 UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Ana... 1031 0.0 UniRef50_B0VGK6 Putative transcription-repair coupling factor n=... 1029 0.0 UniRef50_D0LU01 Transcription-repair coupling factor n=1 Tax=Hal... 1028 0.0 UniRef50_C8PBN6 Transcription-repair-coupling factor n=1 Tax=Lac... 1028 0.0 UniRef50_C4LHL4 Transcription-repair coupling factor n=5 Tax=Bac... 1027 0.0 UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Rum... 1026 0.0 UniRef50_Q04H97 Transcription-repair coupling factor (Superfamil... 1026 0.0 UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Co... 1025 0.0 UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Pep... 1025 0.0 UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Ori... 1023 0.0 UniRef50_B2S2U1 Transcription-repair coupling factor n=4 Tax=Tre... 1023 0.0 UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cy... 1020 0.0 UniRef50_A6CB65 Transcription-repair coupling factor n=2 Tax=Pla... 1016 0.0 UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclass... 1014 0.0 UniRef50_C6A8D1 Transcription-repair coupling factor n=17 Tax=Ac... 1013 0.0 UniRef50_C9KMW0 Transcription-repair coupling factor n=3 Tax=Vei... 1013 0.0 UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Lep... 1012 0.0 UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Ana... 1012 0.0 UniRef50_Q1Q1A4 Similar to transcription-repair coupling factor ... 1010 0.0 UniRef50_Q7UQN7 Transcription-repair coupling factor n=1 Tax=Rho... 1009 0.0 UniRef50_C6XGB7 Transcription-repair coupling factor n=1 Tax=Can... 1008 0.0 UniRef50_A4A0Y1 Transcription-repair coupling factor n=1 Tax=Bla... 1007 0.0 UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rot... 1006 0.0 UniRef50_Q1RI82 Transcription-repair-coupling factor n=16 Tax=Ri... 1006 0.0 UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Ato... 1003 0.0 UniRef50_C2KSG9 Possible transcription-repair coupling factor n=... 1001 0.0 UniRef50_C6X2W6 Transcription-repair coupling factor n=17 Tax=Ba... 1000 0.0 UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Ac... 1000 0.0 UniRef50_Q11PH6 Transcription-repair coupling factor n=5 Tax=Bac... 1000 0.0 UniRef50_B5YFB2 Transcription-repair coupling factor n=2 Tax=Dic... 1000 0.0 UniRef50_Q0B0S4 Transcription-repair coupling factor-superfamily... 997 0.0 UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bac... 996 0.0 UniRef50_C8P217 Transcription-repair-coupling factor (ATP-depend... 995 0.0 UniRef50_B8IZ90 Transcription-repair coupling factor n=3 Tax=Des... 995 0.0 UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cya... 995 0.0 UniRef50_UPI00016C571B transcription-repair coupling factor n=1 ... 994 0.0 UniRef50_C7PET5 Transcription-repair coupling factor n=1 Tax=Chi... 994 0.0 UniRef50_C9LLX5 Transcription-repair coupling factor n=1 Tax=Dia... 990 0.0 UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax... 990 0.0 UniRef50_C9RNX3 Transcription-repair coupling factor n=1 Tax=Fib... 988 0.0 UniRef50_D1R5W0 Putative uncharacterized protein n=1 Tax=Parachl... 986 0.0 UniRef50_C0GM56 Transcription-repair coupling factor n=1 Tax=Des... 986 0.0 UniRef50_Q2S6G5 Transcription-repair coupling factor n=2 Tax=Rho... 985 0.0 UniRef50_B6AN99 Transcription-repair coupling factor n=2 Tax=Lep... 984 0.0 UniRef50_A6L2L5 Transcription-repair coupling factor n=49 Tax=Ba... 982 0.0 UniRef50_A6GBX4 Transcription-repair coupling factor n=1 Tax=Ple... 980 0.0 UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=... 979 0.0 UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Cor... 977 0.0 UniRef50_C5NXX8 Transcription-repair coupling factor n=1 Tax=Gem... 976 0.0 UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerof... 976 0.0 UniRef50_A9NE83 Transcription-repair coupling factor (Superfamil... 975 0.0 UniRef50_C0BHL1 Transcription-repair coupling factor n=1 Tax=Fla... 974 0.0 UniRef50_Q72AT7 Transcription-repair coupling factor n=5 Tax=Des... 970 0.0 UniRef50_D2R0K5 Transcription-repair coupling factor n=1 Tax=Pir... 967 0.0 UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Act... 967 0.0 UniRef50_Q6MB04 Probable transcription-repair coupling factor mf... 962 0.0 UniRef50_D2MMW5 Transcription-repair coupling factor n=2 Tax=Ery... 961 0.0 UniRef50_UPI0001C317DD transcription-repair coupling factor n=1 ... 960 0.0 UniRef50_A1ZRM8 Transcription-repair coupling factor n=2 Tax=Bac... 957 0.0 UniRef50_C5VMF4 Transcription-repair coupling factor n=2 Tax=Pre... 957 0.0 UniRef50_B8DPF5 Transcription-repair coupling factor n=6 Tax=Des... 957 0.0 UniRef50_A4E9V3 Putative uncharacterized protein n=3 Tax=Collins... 955 0.0 UniRef50_C9LF18 Transcription-repair coupling factor n=1 Tax=Pre... 953 0.0 UniRef50_A2BWG1 Transcriptional-repair coupling factor n=11 Tax=... 952 0.0 UniRef50_C6HVP9 Transcription-repair coupling factor n=1 Tax=Lep... 949 0.0 UniRef50_C9MMN8 Transcription-repair coupling factor n=1 Tax=Pre... 946 0.0 UniRef50_D1PXI7 Transcription-repair coupling factor n=7 Tax=Bac... 941 0.0 UniRef50_C1SMC7 Transcription-repair coupling factor Mfd n=1 Tax... 937 0.0 UniRef50_A6DFV9 Transcription-repair coupling factor, MFD (Super... 933 0.0 UniRef50_B5JG36 Transcription-repair coupling factor n=1 Tax=Ver... 932 0.0 UniRef50_Q1AXK2 Transcription-repair coupling factor n=1 Tax=Rub... 927 0.0 UniRef50_Q2GHL2 Transcription-repair coupling factor n=5 Tax=can... 925 0.0 UniRef50_C1A9L3 Transcription-repair coupling factor n=1 Tax=Gem... 921 0.0 UniRef50_O51568 Transcription-repair-coupling factor n=24 Tax=Bo... 918 0.0 UniRef50_Q5PBQ9 Transcription repair coupling factor n=7 Tax=Ana... 918 0.0 UniRef50_Q255X7 Transcription-repair coupling factor-superfamily... 904 0.0 UniRef50_D1N873 Transcription-repair coupling factor n=1 Tax=Vic... 901 0.0 UniRef50_C7M0K8 Transcription-repair coupling factor n=1 Tax=Aci... 894 0.0 UniRef50_P57381 Transcription-repair-coupling factor n=4 Tax=Buc... 893 0.0 UniRef50_A1BEU9 Transcription-repair coupling factor n=12 Tax=Ch... 893 0.0 UniRef50_C7H0W1 Transcription-repair coupling factor n=1 Tax=Eub... 891 0.0 UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=ce... 887 0.0 UniRef50_B1H078 Transcription-repair coupling factor Mfd n=1 Tax... 887 0.0 UniRef50_B1ZYU7 Transcription-repair coupling factor n=2 Tax=Opi... 883 0.0 UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superf... 826 0.0 UniRef50_B9KVH0 DEAD/DEAH box helicase domain protein n=2 Tax=Rh... 821 0.0 UniRef50_C6B9D3 DEAD/DEAH box helicase domain protein n=1 Tax=Rh... 821 0.0 UniRef50_B5YL15 Transcription-repair coupling factor n=1 Tax=The... 820 0.0 UniRef50_C7CIQ8 DEAD/DEAH box helicase domain protein n=9 Tax=Al... 819 0.0 UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Ta... 819 0.0 UniRef50_Q89AK2 Transcription-repair-coupling factor n=3 Tax=Gam... 813 0.0 UniRef50_C7NE08 Transcription-repair coupling factor n=4 Tax=Fus... 806 0.0 UniRef50_Q1YKV9 Putative transcription-repair coupling factor n=... 791 0.0 UniRef50_C5F1R4 Transcription-repair coupling factor n=2 Tax=Hel... 790 0.0 UniRef50_Q83N19 Transcription-repair coupling factor n=4 Tax=Bac... 784 0.0 UniRef50_Q8D3A2 Mfd protein n=1 Tax=Wigglesworthia glossinidia e... 780 0.0 UniRef50_D1Y8J9 Transcription-repair-coupling factor n=2 Tax=Syn... 778 0.0 UniRef50_UPI0001745840 transcription-repair coupling factor n=1 ... 777 0.0 UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Cht... 772 0.0 UniRef50_C1TQS1 Transcription-repair coupling factor Mfd n=1 Tax... 769 0.0 UniRef50_Q89L81 Bll4667 protein n=2 Tax=Bradyrhizobium RepID=Q89... 767 0.0 UniRef50_Q5SJW3 Transcription-repair coupling factor n=3 Tax=The... 766 0.0 UniRef50_A4YQE5 Putative transcription repair coupling factor n=... 760 0.0 UniRef50_B2KBP0 DEAD/DEAH box helicase domain protein n=1 Tax=El... 759 0.0 UniRef50_Q1J0Y7 Transcription factor CarD n=3 Tax=Deinococcus Re... 753 0.0 UniRef50_C3WG56 Transcription-repair coupling factor n=6 Tax=Fus... 745 0.0 UniRef50_C1XT24 Transcription-repair coupling factor (Superfamil... 744 0.0 UniRef50_Q9ZJ57 Transcription-repair-coupling factor n=19 Tax=He... 739 0.0 UniRef50_C3XNZ2 Transcription-repair coupling factor n=1 Tax=Hel... 730 0.0 UniRef50_A9BHZ6 DEAD/DEAH box helicase domain protein n=1 Tax=Pe... 724 0.0 UniRef50_B9K8D6 Transcription-repair coupling factor n=1 Tax=The... 715 0.0 UniRef50_D1B5L3 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 713 0.0 UniRef50_C0QQC7 Transcription-repair-coupling factor (Trcf) (ATP... 712 0.0 UniRef50_A8F4U5 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 711 0.0 UniRef50_C5CIP9 Transcription-repair coupling factor n=1 Tax=Kos... 710 0.0 UniRef50_A7HNV8 DEAD/DEAH box helicase domain protein n=3 Tax=Th... 710 0.0 UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaeroba... 706 0.0 UniRef50_Q8RH90 Transcription-repair coupling factor n=12 Tax=Fu... 704 0.0 UniRef50_A8ERW1 Transcription-repair coupling factor n=13 Tax=Ep... 703 0.0 UniRef50_B2V9E1 DEAD/DEAH box helicase domain protein n=2 Tax=Su... 702 0.0 UniRef50_B1LBI8 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 699 0.0 UniRef50_D1B3F9 Transcription-repair coupling factor n=14 Tax=Ca... 677 0.0 UniRef50_C3XFZ1 Transcription-repair coupling factor n=2 Tax=Cam... 671 0.0 UniRef50_D1AW65 DEAD/DEAH box helicase domain protein n=1 Tax=St... 671 0.0 UniRef50_Q4HTG2 Transcription-repair coupling factor n=2 Tax=Cam... 654 0.0 UniRef50_A9S9T2 Predicted protein n=1 Tax=Physcomitrella patens ... 651 0.0 UniRef50_B9GNF6 Predicted protein n=2 Tax=rosids RepID=B9GNF6_POPTR 627 e-178 UniRef50_Q2R377 CarD-like transcriptional regulator family prote... 621 e-176 UniRef50_A4RX81 Predicted protein n=4 Tax=Mamiellales RepID=A4RX... 581 e-164 UniRef50_B7GBS8 Predicted protein n=2 Tax=Bacillariophyta RepID=... 578 e-163 UniRef50_B7F5N3 cDNA clone:J013044D20, full insert sequence n=6 ... 566 e-159 UniRef50_C0BP78 Transcription factor CarD n=1 Tax=Flavobacteria ... 531 e-149 UniRef50_B5Y798 ATP-dependent DNA helicase RecG n=1 Tax=Coprothe... 498 e-139 UniRef50_B8E2R9 ATP-dependent DNA helicase RecG n=1 Tax=Dictyogl... 497 e-138 UniRef50_A5GF54 ATP-dependent DNA helicase RecG n=15 Tax=Bacteri... 496 e-138 UniRef50_C9RAM3 ATP-dependent DNA helicase RecG n=2 Tax=Clostrid... 493 e-137 UniRef50_A3DEY1 ATP-dependent DNA helicase RecG n=25 Tax=Clostri... 492 e-137 UniRef50_B5YEA4 ATP-dependent DNA helicase RecG n=1 Tax=Dictyogl... 491 e-137 UniRef50_Q6MKR1 ATP-dependent DNA helicase RecG n=1 Tax=Bdellovi... 491 e-137 UniRef50_C0BPF2 Helicase domain protein (Fragment) n=2 Tax=Bacte... 488 e-136 UniRef50_D1BMY0 ATP-dependent DNA helicase RecG n=3 Tax=Veillone... 485 e-135 UniRef50_C0EVE3 Putative uncharacterized protein n=1 Tax=Eubacte... 484 e-135 UniRef50_C6VPY9 ATP-dependent DNA helicase RecG n=34 Tax=Bacteri... 482 e-134 UniRef50_Q1PZ44 Similar to DNA helicase n=1 Tax=Candidatus Kuene... 479 e-133 UniRef50_Q1D6X0 ATP-dependent DNA helicase RecG n=9 Tax=Bacteria... 479 e-133 UniRef50_Q55681 ATP-dependent DNA helicase recG n=5 Tax=Cyanobac... 478 e-133 UniRef50_A9KPH4 ATP-dependent DNA helicase RecG n=8 Tax=Clostrid... 478 e-133 UniRef50_Q1Q824 ATP-dependent DNA helicase RecG n=11 Tax=Gammapr... 477 e-133 UniRef50_B5YJX3 ATP-dependent DNA helicase RecG n=1 Tax=Thermode... 477 e-132 UniRef50_C8WW85 ATP-dependent DNA helicase RecG n=2 Tax=Alicyclo... 477 e-132 UniRef50_B5Y8L2 Transcription-repair-coupling factor (Trcf) (ATP... 476 e-132 UniRef50_D1CCP1 ATP-dependent DNA helicase RecG n=1 Tax=Thermoba... 476 e-132 UniRef50_B2KB03 ATP-dependent DNA helicase RecG n=1 Tax=Elusimic... 475 e-132 UniRef50_D1VSD3 ATP-dependent DNA helicase RecG n=1 Tax=Peptonip... 474 e-132 UniRef50_B0VFU3 ATP-dependent DNA helicase RecG n=1 Tax=Candidat... 474 e-131 UniRef50_UPI0000E87F40 ATP-dependent DNA helicase n=1 Tax=Methyl... 472 e-131 UniRef50_Q02VP1 ATP-dependent DNA helicase RecG n=12 Tax=Lactoba... 472 e-131 UniRef50_D2BIL8 ATP-dependent DNA helicase n=5 Tax=Dehalococcoid... 470 e-130 UniRef50_B7JUK9 ATP-dependent DNA helicase RecG n=12 Tax=Bacteri... 470 e-130 Sequences not found previously or not previously below threshold: >UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=Bacteria RepID=MFD_ECOLI Length = 1148 Score = 1572 bits (4071), Expect = 0.0, Method: Composition-based stats. Identities = 1148/1148 (100%), Positives = 1148/1148 (100%) Query: 1 MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60 MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS Sbjct: 1 MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60 Query: 61 QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH Sbjct: 61 QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY Sbjct: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD Sbjct: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL 300 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL Sbjct: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL 300 Query: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 360 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD Sbjct: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 360 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD Sbjct: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 Query: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG Sbjct: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA Sbjct: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE Sbjct: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL Sbjct: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF Sbjct: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP Sbjct: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI Sbjct: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR Sbjct: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG Sbjct: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV Sbjct: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG Sbjct: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 Query: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1140 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR Sbjct: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1140 Query: 1141 ELEENAIA 1148 ELEENAIA Sbjct: 1141 ELEENAIA 1148 >UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=cellular organisms RepID=MFD_HAEIN Length = 1146 Score = 1350 bits (3494), Expect = 0.0, Method: Composition-based stats. Identities = 732/1142 (64%), Positives = 927/1142 (81%), Gaps = 3/1142 (0%) Query: 4 QYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT 63 ++ +P + + ++LG + A A ++EI+E++ V++ PD ++A+RL +S+ + Sbjct: 5 FFQPDIPTQPNDHKILGNVLPGADALAISEISEQNQNLTVVVTPDTRSAVRLSRVLSELS 64 Query: 64 DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFL 123 Q V DWETLPYD+FSPHQ+IISSRLS L+ L ++G+ ++P++TLMQR+CP +L Sbjct: 65 SQDVCLFPDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLMQRLCPPQYL 124 Query: 124 HGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLD 183 + L++KKG RL D +R QL++AGYR V+QV+EHGEYA RGALLDLFPMGS +P+RLD Sbjct: 125 QHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPMGSAVPFRLD 184 Query: 184 FFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF-EVKRDPE 242 FFDDEIDS+R FDVD+QRTL+E+ +INLLPAHEFPTD IE FR+Q+R+TF E++RDPE Sbjct: 185 FFDDEIDSIRTFDVDTQRTLDEISSINLLPAHEFPTDDKGIEFFRAQFRETFGEIRRDPE 244 Query: 243 HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLAR 302 HIYQQ+SKGTL +GIEYWQPLFF+E + LF Y P TL V+ + +T ERF D R Sbjct: 245 HIYQQISKGTLISGIEYWQPLFFAE-MATLFDYLPEQTLFVDMENNQTQGERFYQDAKQR 303 Query: 303 FENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLA 362 +E R VDPMRPLL P+ LWL VDE+ LK++PR+ K E + + NL LP++ Sbjct: 304 YEQRKVDPMRPLLSPEKLWLNVDEVNRRLKSYPRITFKAEKVRSSVRQKNLPVAALPEVT 363 Query: 363 VQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG 422 +Q+QQK PL LR+F+E F G V+FSVE+EGRRE L +LL+ +K+ P++I L++ + Sbjct: 364 IQSQQKEPLGQLRQFIEHFKGNVLFSVETEGRRETLLDLLSPLKLKPKQIQSLEQIENEK 423 Query: 423 RYLMIGAAEHGFVDT-VRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQ 481 L++ + E GF+ +A+I E++LLG+R+ +R +D R+TINPDTL+RNLAEL IGQ Sbjct: 424 FSLLVSSLEQGFIIEQSLPVAIIGEANLLGKRIQQRSRDKRKTINPDTLVRNLAELKIGQ 483 Query: 482 PVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541 PVVHL+HGVGRY G+ TL+ GGI EYL+L YAN++KLYVPV+SLHLISRY GG++E+AP Sbjct: 484 PVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYANESKLYVPVTSLHLISRYVGGSDESAP 543 Query: 542 LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFET 601 LHKLG +AW+++RQKAAEK+RDVAAELLD+YAQR AK+GFAFK+DRE++Q F +FPFE Sbjct: 544 LHKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAKKGFAFKYDREEFQQFSATFPFEE 603 Query: 602 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLL 661 T DQ AINAV+SDMCQP AMDRLVCGDVGFGKTEVAMRAAFLAV NHKQVAVLVPTTLL Sbjct: 604 TYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLL 663 Query: 662 AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 721 AQQHY+NF+DRFAN PV +E++SRF++AKEQ QIL +AEGK+DILIGTHKL+QSDVKF Sbjct: 664 AQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKFN 723 Query: 722 DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781 DLGLLI+DEEHRFGV KE+IK +RAN+DILTLTATPIPRTLNMAM+G+RDLSII+TPPA Sbjct: 724 DLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPPA 783 Query: 782 RRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 841 RRL++KTFVR+ D +VVREAILREILRGGQVYYL+NDV +I+ AE+L LVPEAR+ +G Sbjct: 784 RRLSIKTFVRQNDDLVVREAILREILRGGQVYYLHNDVASIENTAEKLTALVPEARVIVG 843 Query: 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901 HGQMRERELERVM+DF+HQR+NVLVC+TIIETGID+PTANTIIIERADHFGLAQLHQLRG Sbjct: 844 HGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRG 903 Query: 902 RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961 RVGRSHHQAYA+LLTP PK MT DA++RL+A+ +L++LGAGF LATHDLEIRGAGELLG Sbjct: 904 RVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGN 963 Query: 962 EQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVN 1021 EQSG +E+IGFSLYMELL+ AV ALK GREPSLE+LT QQ ++ELR+P+LLPDD++ DVN Sbjct: 964 EQSGQIESIGFSLYMELLDAAVKALKEGREPSLEELTQQQADIELRVPALLPDDYLGDVN 1023 Query: 1022 TRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGN 1081 RLSFYKRIA+A+++ EL+E+KVELIDRFGLLPD + LL I LR + L + +++ Sbjct: 1024 MRLSFYKRIAAAESKAELDELKVELIDRFGLLPDATKNLLQITELRLLVEPLNVVRIDAG 1083 Query: 1082 EKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRE 1141 +GG IEF+ K VNP I L+QK+P YR DGP + KF++DLS+ K R+E+V +R Sbjct: 1084 TQGGFIEFSAKAQVNPDKFIQLIQKEPIVYRFDGPFKFKFMKDLSDNKVRLEFVVDLLRT 1143 Query: 1142 LE 1143 + Sbjct: 1144 IA 1145 >UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 Tax=Gammaproteobacteria RepID=B3PFQ1_CELJU Length = 1184 Score = 1330 bits (3442), Expect = 0.0, Method: Composition-based stats. Identities = 637/1141 (55%), Positives = 847/1141 (74%), Gaps = 7/1141 (0%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ----MV 67 + G ++ G L G+A A + A +AG ++IAPD +A+RL E+S FT V Sbjct: 45 RLGNRQYWGNLHGSAQALAIVNAARNYAGLSLVIAPDTSSAIRLQTELSFFTGGDEQLPV 104 Query: 68 MNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHA 127 ++LADWETLPYDS SPHQDIIS RL TLY+LPT +RG+L+VP+ TL+QR+ P S+L G++ Sbjct: 105 LHLADWETLPYDSISPHQDIISERLRTLYRLPTTRRGILVVPITTLLQRLMPRSYLLGNS 164 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 L++ G++L D LR L+ AGY VD V EHGE+A RGALLD+FPMGS+LPYR+D FDD Sbjct: 165 LMLAVGEQLDIDQLRHNLERAGYHAVDTVYEHGEFAVRGALLDIFPMGSDLPYRIDLFDD 224 Query: 188 EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 247 E+++LR FD ++Q T+++VE I LLPA EFP +K I LF+ QW + F+V ++Q Sbjct: 225 EVETLRTFDPETQMTIDKVEKIQLLPAKEFPLNKPGINLFKQQWLERFDVNHKECPVFQD 284 Query: 248 VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRG 307 +S G P G+EY+ PLFF + LF Y P NTL+ G+ E SAE F + L R+E+R Sbjct: 285 ISAGISPPGVEYYLPLFF-DSCSNLFDYLPQNTLVYALGNFEKSAENFWLELLRRYESRR 343 Query: 308 VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQ 367 VDP+RPLLPP+ ++L +DEL+++LK + R + + L +A + N + P+L ++AQ Sbjct: 344 VDPLRPLLPPKDIYLSIDELYTQLKPYSRTFISNDILEERAGHYNFASCQPPNLPIRAQA 403 Query: 368 KAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE--ASDRGRYL 425 + PL A+ FL + G V+F ES GRRE L ELL RI++ P +S + Sbjct: 404 EQPLAAIEAFLMEYHGRVLFCAESAGRRETLLELLGRIRVRPAPAESWQAFLSSKESIAI 463 Query: 426 MIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVH 485 I E G + LI ES L GER+ ++R+ + N + +++NL EL IG PVVH Sbjct: 464 TIAPLEQGLQQQQPDTVLIAESQLFGERIQQQRRRKQAQDNSELVVKNLTELKIGAPVVH 523 Query: 486 LEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKL 545 ++HGVGRY G+ T+ T E+L L YA+DAKLYVPV+SLHLISRY+G ++ APLHKL Sbjct: 524 IDHGVGRYRGLETITVDNQTNEFLTLEYADDAKLYVPVTSLHLISRYSGAEDDLAPLHKL 583 Query: 546 GGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQ 605 G ++W +A++KAAE++RD AAELL++YA+RAA++GFAF + Y F SFPFE TPDQ Sbjct: 584 GSESWQKAKRKAAEQIRDTAAELLEVYARRAARKGFAFPDPQTAYAAFSASFPFEETPDQ 643 Query: 606 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 665 +AI AV+ DM P MDRLVCGDVGFGKTEVAMRAAF+A KQVA+L PTTLLAQQH Sbjct: 644 QRAIEAVVKDMLSPKPMDRLVCGDVGFGKTEVAMRAAFVASHAGKQVAILAPTTLLAQQH 703 Query: 666 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 725 Y++ +DRFA WP+ IE++SRFR+ KE Q+L +AEGK+DI++GTHKLLQ D+KFK+LGL Sbjct: 704 YESLKDRFAEWPITIEVLSRFRTTKEVNQVLERLAEGKVDIIVGTHKLLQPDIKFKNLGL 763 Query: 726 LIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785 LI+DEEHRFGVR KE+IKA+RA +DILTLTATPIPRTLNM+M+G+RDLSIIATPPARRL+ Sbjct: 764 LIIDEEHRFGVRQKEQIKALRAEIDILTLTATPIPRTLNMSMAGIRDLSIIATPPARRLS 823 Query: 786 VKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQM 845 VKTFVR YD V++EAILREILRGGQVYYL+N+V+ I+K A L EL+PEARIA+GHGQM Sbjct: 824 VKTFVRTYDEAVIKEAILREILRGGQVYYLHNEVDTIEKVARELQELIPEARIAVGHGQM 883 Query: 846 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 905 RER+LERVM+DF+H+RFN++VCTTIIETGIDIP+ANTIII RAD FGLAQLHQLRGRVGR Sbjct: 884 RERDLERVMSDFYHKRFNIMVCTTIIETGIDIPSANTIIINRADKFGLAQLHQLRGRVGR 943 Query: 906 SHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 SHHQAYA+LLTP +AMT DA KRLEAI++ EDLGAGF LAT+D+EIRGAGELLGEEQSG Sbjct: 944 SHHQAYAYLLTPERRAMTDDAVKRLEAISAAEDLGAGFTLATYDMEIRGAGELLGEEQSG 1003 Query: 966 SMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLS 1025 ++TIGFSLYME+L+ AV A++ G++ +E + ++ LR+P+L+P D++PDV+ RL Sbjct: 1004 QIQTIGFSLYMEMLDRAVKAIRQGKQADIEQALKESIDINLRIPALIPSDYLPDVHLRLV 1063 Query: 1026 FYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGG 1085 YKR+A+A+ L +++VE+IDRFGLLPD + L + +++ A++LGI K+E N +GG Sbjct: 1064 MYKRLANAENAESLRDLQVEMIDRFGLLPDAVKNLFRVTQIKITAEQLGITKIEANSRGG 1123 Query: 1086 VIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEEN 1145 IEF+ V+P ++ L+Q QP+ Y+L+G +LKF QDL + R++ + + + L Sbjct: 1124 KIEFSGATGVDPLQIVKLVQSQPRVYKLEGANQLKFAQDLESTEKRLQTLSELLDYLTPK 1183 Query: 1146 A 1146 + Sbjct: 1184 S 1184 >UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=Shewanella RepID=Q12NL8_SHEDO Length = 1179 Score = 1268 bits (3281), Expect = 0.0, Method: Composition-based stats. Identities = 644/1179 (54%), Positives = 842/1179 (71%), Gaps = 33/1179 (2%) Query: 1 MPEQYRYTLP-VKAGEQ-RLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDE 58 M + +T P VK G+Q + L L G + + +A++ + G +++ D A+ L E Sbjct: 1 MSQFSVFTPPSVKKGQQTQRLVTLGGLSQSLSLAQLILANKGTSLIVTHDTPTAMLLETE 60 Query: 59 ISQFT---DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 + D + D ETLPYDSFSPHQD+IS RL TL QL + +IVP+NTLM Sbjct: 61 LHYLLANHDVNLCLFPDRETLPYDSFSPHQDLISQRLETLAQLGNLGHNAVIVPINTLMV 120 Query: 116 RVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175 R+ P S+L + +V+KKG + +R L GY V+QV EHGE+A RG++LD+FP G Sbjct: 121 RLPPQSYLSANVMVLKKGDTYALQTVRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPTG 180 Query: 176 SELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF 235 + P R++ FDDEI+S+R FDV++QR+ V+AI +LPA EF TD AAIE FR ++R F Sbjct: 181 CQQPLRIELFDDEIESIRHFDVETQRSEVAVDAIRMLPAKEFATDSAAIEGFRQRYRRRF 240 Query: 236 EV-KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAER 294 EV ++ E +YQ VS+ +PAGIE + PLFF + LF Y P NT L+ GD++ + Sbjct: 241 EVISKEAESVYQLVSRNLMPAGIENYLPLFFDD-TASLFDYLPENTQLITLGDIDKACAN 299 Query: 295 FQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKT------------- 341 + R+E+R VDP+RPLL P L+L ++LF+ K + R Q Sbjct: 300 HLTEIHHRYEDRRVDPLRPLLAPHELYLTQEQLFAAFKPYKRSQFFIHTPGDAQLGEDGT 359 Query: 342 -EHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGE 400 + + K + LPD+ + K PL++L+ F + P++FS ESEGRREAL Sbjct: 360 KKDVAKKDSALQANVAPLPDINANHKLKQPLESLQAFAQD-GKPLLFSAESEGRREALLA 418 Query: 401 LLARIKIAPQRIMRLDEASDRGR-------YLMIGAAEHG---FVDTVRNLALICESDLL 450 LL++I I P LDE D L++ G L+LICE++L Sbjct: 419 LLSKIGIKPTLFKHLDEFLDASVPLKGPVHGLIVSPLSRGCTLLDSPKGELSLICETELF 478 Query: 451 GERVAR-RRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL 509 G ++A+ RR+D ++ ++ D LI++LAEL +GQ +VHLEHGV Y G+ TL+ GG+ EYL Sbjct: 479 GHKIAQQRRRDKQKQVSSDALIKDLAELKVGQAIVHLEHGVALYQGLETLDTGGLVAEYL 538 Query: 510 MLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELL 569 L YA KLYVPVSSLHLISRY +E+NA L+KLG + W++A++KA EK+RDVAAELL Sbjct: 539 KLEYAGGDKLYVPVSSLHLISRYNANSEDNAQLNKLGNETWAKAKKKAIEKIRDVAAELL 598 Query: 570 DIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGD 629 D+YA+R ++ G A D ++Y F FP+E T DQ AI AVL+DM P +MDRLVCGD Sbjct: 599 DVYARRQSRPGEALAIDADEYAQFAQGFPYEETVDQESAIIAVLNDMQAPTSMDRLVCGD 658 Query: 630 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSA 689 VGFGKTEVAMRAAF+AV+ KQV VLVPTTLLAQQHY+NF+DRFA+WPV IE++SRFRSA Sbjct: 659 VGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVEIEVMSRFRSA 718 Query: 690 KEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANV 749 KEQ Q+L ++EGK+DI+IGTHKLLQS+ KF DLGLLI+DEEHRFGVR KE+IKA+RANV Sbjct: 719 KEQEQVLQSLSEGKVDIVIGTHKLLQSEAKFVDLGLLIIDEEHRFGVRQKEKIKALRANV 778 Query: 750 DILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRG 809 DILTLTATPIPRTLNMAMSGMRDLSIIATPPA+RLAVKTFVREY +REA+LREILRG Sbjct: 779 DILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYHQATIREALLREILRG 838 Query: 810 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 869 GQVYYL+N+VE I+K A+ L +L+PEAR+ GHGQMRER+LE+VM DF+HQRFNVLVCTT Sbjct: 839 GQVYYLHNNVETIEKCAQDLRDLLPEARVVTGHGQMRERDLEKVMADFYHQRFNVLVCTT 898 Query: 870 IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKR 929 IIETGID+P+ANTI+I+RAD FGLAQLHQLRGRVGRSHHQAYA+++TP K ++TDA+KR Sbjct: 899 IIETGIDVPSANTIVIDRADKFGLAQLHQLRGRVGRSHHQAYAYMITPPIKLISTDARKR 958 Query: 930 LEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAG 989 LEAI +LE+LGAGF LAT DLEIRGAGELLG+EQSG + IGFSLYME+LE+AV ALK G Sbjct: 959 LEAIDALEELGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVSALKEG 1018 Query: 990 REPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDR 1049 +EPSL + + Q EV+LR+P+LLP+D++ DVN RLS YKRIA+ K+E L+E++VE IDR Sbjct: 1019 KEPSLAYMLNAQCEVDLRIPALLPEDYVSDVNMRLSMYKRIANCKSEAMLDELRVEFIDR 1078 Query: 1050 FGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQ 1109 FGLLP+P + LL+++ + QA KLG K+E + KGG IEF + + ++P ++IGLLQKQP Sbjct: 1079 FGLLPEPTKNLLELSLYKHQATKLGATKIEMHAKGGSIEFGDNHKIDPMFIIGLLQKQPN 1138 Query: 1110 HYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA 1148 YR++GP +L+F K R+E V + +L +++I Sbjct: 1139 IYRMEGPNKLRFAIPAESSKQRLELVATLLEQLAQHSIG 1177 >UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=Proteobacteria RepID=Q2SWT7_BURTA Length = 1217 Score = 1261 bits (3263), Expect = 0.0, Method: Composition-based stats. Identities = 575/1150 (50%), Positives = 760/1150 (66%), Gaps = 17/1150 (1%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEI--AERHAGPVV-LIAPDMQNALRLHDE 58 P Q L VKAG++ G+A A ++A A R P++ +I + +A RL E Sbjct: 67 PSQSPVAL-VKAGQRFAFDGAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQE 125 Query: 59 ISQFTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRV 117 + F V L DWETLPYD+FSPHQD++S RL+TL+ L + +L+VP T + R+ Sbjct: 126 LRYFAPDARVRVLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRM 185 Query: 118 CPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE 177 P SFL + +G+RL L+ QL AGY HV QV+ GEY RG+L+DLFPMGS Sbjct: 186 PPASFLAAYTFAFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPMGSP 245 Query: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEV 237 LPYR+D FDD++DS+R FD D+QR+L V + LLP EFP D+AA FRS+WR+TFE Sbjct: 246 LPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRWRETFEG 305 Query: 238 KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQA 297 IY+ + G AGIEY+ PLFF E LF Y P N LV TGDL+ + +RF A Sbjct: 306 DPSRAPIYKDIGNGVPSAGIEYYLPLFFDE-TATLFHYLPENAQLVFTGDLDAAIKRFTA 364 Query: 298 DTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQK 357 DT R+ D RP+L PQ L+L D+ + K + R+ L + AA Sbjct: 365 DTKQRYAFLSHDRERPILEPQRLFLSDDDFYLLAKPFARIVLPAQPSGGWAA-------P 417 Query: 358 LPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE 417 LP+LA+ APL A +LET + V+F+VES GRRE + +L A + P Sbjct: 418 LPNLALDRHADAPLAAFAAYLETTNNRVLFTVESAGRRETIAQLFAEHHLRPAGSDSFAA 477 Query: 418 --ASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR-RTINPDTLIRNL 474 +D L + GF A++ E++L G R + + + N D ++R+L Sbjct: 478 WLETDERFALGVAPLASGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDL 537 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG 534 +EL +G PVVH +HG+GRY G+ +++ G E+L L YA D+KLYVPV+ LH+ISRY+G Sbjct: 538 SELKVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAGDSKLYVPVAQLHVISRYSG 597 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 ++APLH LG W RA+++AA+++RD AAELL++YA+RAA+EG AF D Y F Sbjct: 598 ADPDSAPLHALGSGQWERAKRRAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYVKFA 657 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 DSF FE TPDQA AI AV+ DM MDRLVCGDVGFGKTEVA+RAAF+AV KQVA+ Sbjct: 658 DSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAL 717 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 L PTTLLA+QH F DRFA+WPV+I +SRF+S KE + ++ +G +DI+IGTHKLL Sbjct: 718 LSPTTLLAEQHTQTFIDRFADWPVKIVELSRFKSTKEVNAAIQQINDGSVDIVIGTHKLL 777 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 SDV+FK LGL+I+DEEHRFGVR KE +KA+RA VD+LTLTATPIPRTL MA+ G+RD S Sbjct: 778 SSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFS 837 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 +IAT P +RLA+KTFVR + V+REA+LRE+ RGGQVY+L+N+VE I+ L ELVP Sbjct: 838 VIATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRRAMLEELVP 897 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 EARI I HGQM ERELERVM DF QR NVL+CTTIIETGID+P+ANTII+ RAD FGLA Sbjct: 898 EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLA 957 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QLHQLRGRVGRSHHQAYA+LL P+A+T AQ+RLEAI +E+LG+GF LA HDLEIRG Sbjct: 958 QLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRG 1017 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPD 1014 GE+LG++QSG + IGF LY E+L +AV ALK G+EP L + TE+ L P++LP Sbjct: 1018 TGEVLGDKQSGEIHEIGFQLYTEMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPA 1077 Query: 1015 DFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 D+ DV RLS YKR+A+ + + ++ I+ ELIDRFG LP A L++ RLR A+ LG Sbjct: 1078 DYCGDVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLG 1137 Query: 1075 IRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEW 1134 I K++ +E ++F ++P +I ++QK +H +L G +L+ + R+ Sbjct: 1138 IMKIDASEAAIGLQFVPNPPIDPMRIIDMVQKH-RHIKLAGQDKLRIETRTPDLAVRVST 1196 Query: 1135 VRQFMRELEE 1144 V++ +R L + Sbjct: 1197 VKETLRALGQ 1206 >UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Gammaproteobacteria RepID=Q31GG0_THICR Length = 1159 Score = 1247 bits (3227), Expect = 0.0, Method: Composition-based stats. Identities = 574/1139 (50%), Positives = 781/1139 (68%), Gaps = 19/1139 (1%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF--TDQMVMNLADWETL 76 L ++ +A A + E A+ G VL+ +M A + + + F TD +++ +WETL Sbjct: 27 LNNISESALALI--EKAQNAPGLAVLLTENMAEANKYSELLRFFAETDYPILSFPEWETL 84 Query: 77 PYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 PYD FSPHQDIIS RL TLYQLP+ ++G+LI+PV+TL+Q+V PH F+ + +++ G+ + Sbjct: 85 PYDQFSPHQDIISQRLKTLYQLPSTKQGLLILPVSTLIQKVVPHQFIEKYTFLLQCGETV 144 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 DA QL+S+GY+ V QVMEHGE+A RG+++DL+PMGS PYRLD FDDEI+++R FD Sbjct: 145 DIDAFTRQLESSGYQRVSQVMEHGEFAVRGSIIDLYPMGSRTPYRLDLFDDEIETIRSFD 204 Query: 197 VDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAG 256 ++QR+++ +E I LLPA E+ I LFR +R F +Y+ V G G Sbjct: 205 PETQRSVDSIEQIELLPAKEYDLTPEGISLFRQNFRSHFGDDARNSQLYRSVKDGQTVDG 264 Query: 257 IEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLP 316 +EY+ LF S + F Y P++ L N GDL+ + D R++ +P P+L Sbjct: 265 LEYYLSLFHS-NIATFFDYLPSDCLFFNQGDLQAQIRQNWQDYQERYDIAQHNPDYPVLV 323 Query: 317 PQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRK 376 P L L +E FS LK + R+Q + PT A A LPDL +Q+ + PL L Sbjct: 324 PSELILSENETFSALKAFHRIQFSLQ--PTDKATATFKTYPLPDLTIQSNSEYPLAKLNA 381 Query: 377 FLETF----DGPVVFSVESEGRREALGELLARI----KIAPQRIMRLDEASDRG--RYLM 426 FL+ + +G +++ ES GRRE L +L++ P++I E ++ Sbjct: 382 FLDQYASEHNGRILYCAESTGRRETLLTILSKHPQFKGKLPKQIDSWGEFKTSKAPYEII 441 Query: 427 IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 +G E + ++ ES + G+ V ++R+ R+ D I NL EL +GQP+VH Sbjct: 442 VGPLEDSVY--TDDFCILSESQIFGQTVIQKRRRKRKHSEFDNAISNLIELDLGQPIVHF 499 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLG 546 +HGVGR+ G+ T+ G E+LM+ YA DAKLYVPV+SLHLISRY G + E APLHKLG Sbjct: 500 DHGVGRFLGLETMTIQGEEHEFLMIQYAGDAKLYVPVTSLHLISRYTGASAETAPLHKLG 559 Query: 547 GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606 D W +A++KAAEKVRDVAAELLDIYAQR A+ G+AF+ D E Y F FPFE TPDQ Sbjct: 560 SDKWDKAKRKAAEKVRDVAAELLDIYAQREARPGYAFQTDEEAYARFRAGFPFEETPDQE 619 Query: 607 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 666 AI AVLSDM MDRL+CGDVGFGKTEVAMRAAF+A + KQVAVLVPTTLL+QQH Sbjct: 620 AAIEAVLSDMKSDKPMDRLICGDVGFGKTEVAMRAAFVAAYSGKQVAVLVPTTLLSQQHL 679 Query: 667 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 +NF++RFA+WP+RIE +SRF+SAKE QI+ V ++DI+IGTHK++Q+D++F +LGL+ Sbjct: 680 ENFKNRFADWPIRIEGLSRFQSAKETKQIVEAVKNNQVDIIIGTHKIIQNDMQFGNLGLI 739 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 I+DEEHRFGVR KE++K +R VD++T+TATPIPRTLNMAM+ +RDLSIIAT PA+RLAV Sbjct: 740 IIDEEHRFGVRQKEQLKKLRTEVDVMTMTATPIPRTLNMAMNDLRDLSIIATAPAKRLAV 799 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 +TFV++++ VV+EA LREI RGGQ+Y L+N+V+ I++ AE + L+PEA++ HGQM Sbjct: 800 QTFVQDWNPDVVKEACLREIRRGGQIYLLFNNVDKIEQMAEEIQALLPEAKVETAHGQMH 859 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 ERELE+VM +F+H+RFN+LVCTTIIETGIDIPTANTI+I RAD FGLAQLHQLRGRVGRS Sbjct: 860 ERELEQVMQNFYHRRFNILVCTTIIETGIDIPTANTILIHRADKFGLAQLHQLRGRVGRS 919 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 HH+AYA+L T MT DA+KRL AIA + LGAGF LA+HDLEIRGAGELLG+ QSG Sbjct: 920 HHKAYAYLFTAGKALMTKDAEKRLTAIAKHDTLGAGFMLASHDLEIRGAGELLGDGQSGQ 979 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026 + IGF LY +LL+ AV ALK+G++P L+ EVEL MP+L+P+D++PD++TRL F Sbjct: 980 IHEIGFGLYSDLLDRAVRALKSGKQPELDAKLHTGAEVELGMPALIPEDYLPDIHTRLVF 1039 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGV 1086 YKRIASA+ N L+E++VE+IDRFGLLPD + L + R++ L ++K+E +E Sbjct: 1040 YKRIASAEDNNALQELEVEMIDRFGLLPDQVKNLFETTRVKLVIDALNLKKVEASEAMIR 1099 Query: 1087 IEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEEN 1145 I+F ++NP LI L+Q P++Y+L G LK+ + E K RI+ + + + Sbjct: 1100 IQFGSNPNINPLELIKLIQNHPKNYQLKGQIELKYFDTMLEMKQRIQAIELIVATISNK 1158 >UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Betaproteobacteria RepID=C6P0P2_9PROT Length = 1227 Score = 1242 bits (3213), Expect = 0.0, Method: Composition-based stats. Identities = 561/1182 (47%), Positives = 748/1182 (63%), Gaps = 60/1182 (5%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLP 77 L G++ A +A+ A +H+ P+V+IA + A RL +EI F + V L DWETLP Sbjct: 49 YSNLQGSSDALALAQYAVQHS-PLVIIAANALEAQRLVEEIPFFDPKLRVHLLPDWETLP 107 Query: 78 YDSFSPHQDIISSRLSTLYQL----------------------------PTMQRGVLIVP 109 YD FSPHQD+IS RL+TL+ + T V++VP Sbjct: 108 YDHFSPHQDLISERLATLHHIRSIGQQTARPSPQSSPASGRGSERENQSSTSACDVIVVP 167 Query: 110 VNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALL 169 + T + + P S+L + +KKG+RL DA R Q+ AGY HV QV+ GEY RG ++ Sbjct: 168 ITTALYPLPPVSYLAAYTFFLKKGERLDLDAFRQQMTLAGYNHVQQVLTPGEYCVRGGII 227 Query: 170 DLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRS 229 DLF MGS LPYR+D FDDEI+++ FDVD+QRTL V I LLPA EFP D+ FR Sbjct: 228 DLFAMGSVLPYRIDLFDDEIETIATFDVDTQRTLYPVPEIRLLPAREFPLDEKGQATFRQ 287 Query: 230 QWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLE 289 +RD FE IY+ VSKG PAGIEY+ PLFF + LF Y P L +++ Sbjct: 288 NFRDRFEGDPSKSRIYKDVSKGIAPAGIEYYLPLFF-DQTATLFDYLPKIATLCLHHNVD 346 Query: 290 TSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPT--- 346 + F D +R+ DP PLL + L+L ++ F K + R+ + P+ Sbjct: 347 EAITSFGKDAASRYNLLRGDPQHPLLETKELFLDGEQFFIRAKEFARIDVIAASAPSPLA 406 Query: 347 -----------------------KAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDG 383 +P +AV + + P FL + G Sbjct: 407 PLPEGEGNLSSLSPGEGVGVREDSKNTTRCSTAAIPPIAVDRRAEVPTQKFADFLRAYAG 466 Query: 384 PVVFSVESEGRREALGELLARIKIAPQRIMRLDE--ASDRGRYLMIGAAEHGFVDTVRNL 441 V+ ES GRRE + L + P A L +G + GF L Sbjct: 467 RVLLLAESLGRREIMSGYLKEYGLTPAVCEDYASFLAGQDKFMLGVGPVQIGFSLPDEQL 526 Query: 442 ALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEA 501 A++ E++L + R + R N + ++R+L+EL G PVVH +HG+ RY G+ L+ Sbjct: 527 AIVTETELYAAQPRSRANRAARKSNVEGMLRDLSELKPGDPVVHEQHGIARYRGLVNLDL 586 Query: 502 GGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKV 561 G E+L+L YA + KLYVPVS LH+ISRY+GGA E APLHKLG AW +A+++A ++V Sbjct: 587 GEGENEFLLLEYAGEDKLYVPVSQLHVISRYSGGAAEAAPLHKLGSGAWDKAKRRAMQQV 646 Query: 562 RDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621 RD AAELL+IYAQRA ++G AFK Y+ F F FE T DQA AI AVL D+ Sbjct: 647 RDTAAELLNIYAQRATRKGHAFKLTYHDYEAFAAGFGFEETADQAAAIEAVLLDLQSGKP 706 Query: 622 MDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIE 681 MDRL+CGDVGFGKTEVA+RAAF+A KQVAVLVPTTLLA+QH+ NF RFA+WP+RI Sbjct: 707 MDRLICGDVGFGKTEVALRAAFVAASEGKQVAVLVPTTLLAEQHFQNFSTRFADWPIRIA 766 Query: 682 MISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKER 741 +SRFRSAKE TQ L ++A+GK+DI+IGTHKL+Q DVKF +LGL+I+DEEHRFGV+ KE+ Sbjct: 767 ELSRFRSAKEVTQALKDLADGKLDIVIGTHKLIQKDVKFHNLGLVILDEEHRFGVQQKEK 826 Query: 742 IKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREA 801 +KA+RA VD+LTLTATPIPRTL M++ G+RD S+IAT P RRL++KTFV + V+REA Sbjct: 827 LKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPQRRLSIKTFVSGFSQGVIREA 886 Query: 802 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR 861 +LRE+ RGGQVY+L+N+V+ I E+L L+PEARI + HGQM ER+LE VM DFHHQR Sbjct: 887 VLRELKRGGQVYFLHNEVDTIANMLEKLETLLPEARIRVAHGQMGERDLEAVMRDFHHQR 946 Query: 862 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA 921 FNVL+C+TIIETGID+PTANTII+ RAD FGLAQLHQLRGRVGRSHHQAYA+LL Sbjct: 947 FNVLLCSTIIETGIDVPTANTIIMNRADRFGLAQLHQLRGRVGRSHHQAYAYLLVDSMDG 1006 Query: 922 MTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLEN 981 +T A+KRLEAI ++E LG+GF LA HDLEIRGAGE+LGE QSG M+ IGFSLY ++L Sbjct: 1007 LTAQAKKRLEAIQAMEQLGSGFFLAMHDLEIRGAGEVLGESQSGEMQEIGFSLYNDMLAA 1066 Query: 982 AVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEE 1041 A+ +LK G+EP + TE+ L P+LLP+D+ D++ RL YKR+A+ T+ +L++ Sbjct: 1067 AIASLKQGKEPDMTHPLGVTTEINLHTPALLPNDYCGDIHQRLIIYKRLANCDTQEDLDD 1126 Query: 1042 IKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLI 1101 ++ ELIDRFGLLP+PA+TLLD RLR A+ LGI K++ + + VI+F ++P +I Sbjct: 1127 MQQELIDRFGLLPEPAQTLLDSHRLRILAKPLGISKVDASSEAIVIQFVPNPPIDPMKVI 1186 Query: 1102 GLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELE 1143 ++Q +H ++ G +L+ + + R+ VR F EL+ Sbjct: 1187 TMIQ-SKRHIKMAGQDKLRIELKYGDLQQRVLAVRNFFGELK 1227 >UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Burkholderiales RepID=Q12A09_POLSJ Length = 1201 Score = 1230 bits (3182), Expect = 0.0, Method: Composition-based stats. Identities = 563/1191 (47%), Positives = 762/1191 (63%), Gaps = 57/1191 (4%) Query: 9 LPVKAGEQRLLGELTGAACATLVAEIAER---HAGPVVLIAPDMQNALRLHDEISQFTDQ 65 P+ +G++ L + G+A A L+A + +R +I D A RL DE++ F Sbjct: 4 PPLVSGKRYTLPQPPGSADALLLARLGQREQAAGKLTAIITSDATTAQRLMDEMAFFAPD 63 Query: 66 MVM-NLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG----VLIVPVNTLMQRVCPH 120 + DWETLPYD+FSPHQD+IS RL+TL+++ + V+IVP T + R+ P Sbjct: 64 LRYALFPDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVIVPATTALYRLAPP 123 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 SFL G+ K Q+L L+ QL AGY HV QV+ GEYA RG L+DLFPMGS +P+ Sbjct: 124 SFLAGYTFEFKVKQKLDESRLKAQLTLAGYSHVTQVVGPGEYAVRGGLIDLFPMGSLVPF 183 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R+D FDDEIDS+R FD DSQR+L V + LLP EFP D A FR +WR+ + Sbjct: 184 RVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDDARAKFRKRWRELLDGDPT 243 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL 300 IY+ + G +GIEY+ PLFF E +F Y ++ +V GDLE + +RF DT Sbjct: 244 KSRIYKDMGNGVATSGIEYYLPLFFDE-TATVFDYLGSDATVVLHGDLEPAFQRFWQDTK 302 Query: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKT----------------EHL 344 R+ P RP LPP+SL+L ++ ++ + ++ LK + L Sbjct: 303 DRYRLVRDAPDRPALPPESLFLGAEQFYARANGYAQLALKAGSPHPNPLPGGEGIKGDLL 362 Query: 345 PTKAANANLG-------------------FQKLPDLAVQAQQKAPLDALRKFLETFDGPV 385 P + + G F LP +AV + PL + + V Sbjct: 363 PLQGGEESKGDLLPLPLGEGRGEGSPYTEFDSLPAMAVVRGAEDPLARFKGHVRNTAHRV 422 Query: 386 VFSVESEGRREALGELLARIKIAPQRIMRLDEA--SDRGRYLMIGAAEHGFVDTVRNLAL 443 + ES+GRRE+L + L ++P L + SD + A GF + Sbjct: 423 LVLAESDGRRESLLDFLRASNVSPPAFNSLQDFQTSDEKLGIATAALNTGFSWLEEGIDF 482 Query: 444 ICESDLLGERVARRRQDSRRTI--NPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEA 501 I E++L V RR++ ++ + + LI++L+EL++G PVVH HG+GRY G+ L+ Sbjct: 483 ITETELFAAGVTTRRRNKKQEQVSDVEALIKDLSELNVGDPVVHSAHGIGRYRGLLNLDL 542 Query: 502 GGIT--------GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRA 553 G E+L L YA+ A LYVPVS LHLISRY G + E APLH+LG W +A Sbjct: 543 GQDKNPDGSPSLQEFLHLEYADKATLYVPVSQLHLISRYTGVSAEEAPLHRLGSGQWEKA 602 Query: 554 RQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVL 613 ++KAAE++RD AAELL+IYA+RAA+EG AF++ Y+ F + F FE T DQ AI+AV+ Sbjct: 603 KRKAAEQIRDSAAELLNIYARRAAREGHAFRYSPGDYEAFANDFGFEETADQRAAIHAVI 662 Query: 614 SDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRF 673 DM P MDRLVCGDVGFGKTEVA+RAAF+A+ KQVA+L PTTLLA+QHY DRF Sbjct: 663 QDMISPRPMDRLVCGDVGFGKTEVALRAAFIAITGGKQVALLAPTTLLAEQHYQTLVDRF 722 Query: 674 ANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHR 733 A WPV++ +SRFRSA+E T + +A+G +DI++GTHKLL DVKF+ LGLLI+DEEHR Sbjct: 723 AKWPVKVAEMSRFRSAREITAAIKGLADGSVDIVVGTHKLLSQDVKFQRLGLLIIDEEHR 782 Query: 734 FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREY 793 FGVRHKE +KAMRA VD+LTLTATPIPRTL MA+ G+RDLS+IAT P RRLA+KTFVR Sbjct: 783 FGVRHKETMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRSE 842 Query: 794 DSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERV 853 ++ V+REA+LRE+ RGGQVY+L+N+VE IQ E+L E++PEARIA+ HGQM ERELERV Sbjct: 843 NNGVIREAVLRELKRGGQVYFLHNEVETIQNRREKLEEILPEARIAVAHGQMPERELERV 902 Query: 854 MNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 913 M DF QR+N+L+C+TIIETGID+P+ANTI++ RAD FGLAQLHQLRGRVGRSHHQAYA+ Sbjct: 903 MKDFVAQRYNLLLCSTIIETGIDVPSANTIVMSRADKFGLAQLHQLRGRVGRSHHQAYAY 962 Query: 914 LLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFS 973 L+ P + +T A +RLEAI +E+LG+GF LA HDLEIRG GE+LGE QSG+M +GF Sbjct: 963 LMVPDIEGLTKQASQRLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGESQSGNMLEVGFQ 1022 Query: 974 LYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASA 1033 LY E+L AV +LKAGREP L S TE+ L P+LLP+D+ DV+ RLSFYK++A+A Sbjct: 1023 LYNEMLSEAVASLKAGREPDLLSPLSVTTEINLHAPALLPNDYCGDVHLRLSFYKKLATA 1082 Query: 1034 KTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKN 1093 K ++++ + E++DRFG LP A+TL+D+ RLR A+ G+ K++ I F + Sbjct: 1083 KNTDQIDALLEEIVDRFGKLPPQAQTLIDVHRLRVIARPYGVVKVDAAPGLINITFKKDP 1142 Query: 1094 HVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 ++ ++ L+QK +H +L G +L+ + L K R + VR +R L + Sbjct: 1143 PIDSMAIMQLIQKN-RHIKLAGNDKLRIERALENPKDRAQMVRDVLRSLGQ 1192 >UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xanthomonadaceae RepID=B2I662_XYLF2 Length = 1195 Score = 1224 bits (3166), Expect = 0.0, Method: Composition-based stats. Identities = 583/1194 (48%), Positives = 782/1194 (65%), Gaps = 56/1194 (4%) Query: 2 PEQYRYTLPVKAGEQRLL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI 59 P + L +AG+ R ++ A A +A A+ H GP++L+ D +A ++ ++ Sbjct: 3 PSSFPSPLLPRAGQLRAFWRAPVSPTALAWHIACAAQAHRGPLLLVTHDNHSAHQIEVDL 62 Query: 60 SQFT----DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 V+ DWETLPYD FSP +I+S RL+TL++LP++ RG+++VPV TLMQ Sbjct: 63 QTLLAHCSGLPVIGFPDWETLPYDQFSPDPNIVSQRLATLHRLPSLARGIVVVPVQTLMQ 122 Query: 116 RVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175 ++ P S++ G + K GQRL DA + +L+ AGYR+V QVM+ G++ RG LLD++PMG Sbjct: 123 QLAPLSYIVGGSFDFKVGQRLILDAEKQRLERAGYRNVPQVMDPGDFTVRGGLLDVYPMG 182 Query: 176 SELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF 235 +++P R++ D+EIDS+R FD +SQR+L +V+ I++LP E P D A +E + R+ F Sbjct: 183 TDVPLRIELLDEEIDSIRTFDPESQRSLNQVDVIHMLPGREVPLDPAVLERVLVRLRERF 242 Query: 236 EVKRDPEHIYQQVSKGTLPAGIEYWQPLFFS------EPLPPLFSYFPANTLLVNTGDLE 289 ++ +YQ + G P+GIEY+ PLFF LF Y A+ L++ + Sbjct: 243 DLDTRRSALYQDLKAGLAPSGIEYYLPLFFESGRGGKHATATLFDYLSADLLVLTAPGVS 302 Query: 290 TSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAA 349 +A+ F T+ R+E R D RPLLPPQ L+ D L L PR+++ + Sbjct: 303 NAADAFWGQTMQRYEQRRHDIERPLLPPQELYQSPDALRERLNRLPRIEVWSAEHAHIDK 362 Query: 350 NANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAP 409 L Q LP V + + ALR FL + G V+ + S GRRE L ELLA + P Sbjct: 363 AEVLDEQPLP---VATKDVSVGQALRTFLADYAGRVLIAATSPGRREVLLELLATADLQP 419 Query: 410 Q-------RIMRLDEASDRGRY---------------------------------LMIGA 429 + + E SD G + + Sbjct: 420 EVLPDFRSFFLSAAEVSDLGEANRDSGNGVSGSNDADAAAFHVIASQGGSLPTFAITVAP 479 Query: 430 AEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHG 489 E GF +V +A++ E L ERV R+ R P+ +IR+L EL G P+VH +HG Sbjct: 480 LEDGFSLSVPPIAVLTERQLFPERVNPVRRSRRVGREPEAIIRDLGELSEGAPIVHEDHG 539 Query: 490 VGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDA 549 VGRY + T+ G+ GE++ + YA +LYVPV+ LHLISRY+G + E APLH LGG+ Sbjct: 540 VGRYRKLITMNVSGMPGEFVEIEYAKGDRLYVPVAQLHLISRYSGASPETAPLHSLGGEQ 599 Query: 550 WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAI 609 WS+A++KAAEKVRDVAAELL+I A+R A+ G A + DR Y+ F FPFE TPDQ AI Sbjct: 600 WSKAKRKAAEKVRDVAAELLEIQARRQARAGLALRIDRTMYEPFAAGFPFEETPDQLAAI 659 Query: 610 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 669 L D+ MDR+VCGDVGFGKTEVA+RAAF A KQVAVLVPTTLLA+QHY NF Sbjct: 660 ETTLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHYRNF 719 Query: 670 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 729 RDRFA++P+R+E++SRF+S KE L +V+EG +D+++GTH+LLQ DVKFKDLGL+IVD Sbjct: 720 RDRFADYPIRVEVLSRFKSTKEIKAELQKVSEGTMDVIVGTHRLLQPDVKFKDLGLVIVD 779 Query: 730 EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF 789 EE RFGVR KE +K++RANV +LTLTATPIPRTLNMAM+G+RDLSIIATPP RLAV+TF Sbjct: 780 EEQRFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAVQTF 839 Query: 790 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERE 849 + +D+ ++ EA RE+ RGGQ+Y+L+NDVE+I + LA+LVPEARI I HGQM ERE Sbjct: 840 ITPWDNALLHEAFQRELARGGQLYFLHNDVESIGRMQRDLAQLVPEARIGIAHGQMPERE 899 Query: 850 LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 909 LERVM DF Q FNVL+ TTIIE+GIDIP ANTIII RAD FGLAQLHQLRGRVGRSHH+ Sbjct: 900 LERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHR 959 Query: 910 AYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMET 969 AYA+L+ P ++MT DA+KRLEAIAS+++LGAGF LATHDLEIRGAGELLGE+QSG M Sbjct: 960 AYAYLVVPDRRSMTADAEKRLEAIASMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAE 1019 Query: 970 IGFSLYMELLENAVDALKAGREPSLEDLTSQQ-TEVELRMPSLLPDDFIPDVNTRLSFYK 1028 +GFSLY ELLE AV ++K G+ P L+ ++ EV+L +P+L+P+D++PDV+TRL+ YK Sbjct: 1020 VGFSLYTELLERAVRSIKQGKLPDLDAGQEERGAEVDLHIPTLIPEDYLPDVHTRLTLYK 1079 Query: 1029 RIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088 RI++A+ N L E+ VE+IDRFG+LP+ A+ L IA L+ QA LGI KLE E GG I Sbjct: 1080 RISTARDSNALRELNVEMIDRFGVLPETAKHLFAIAELKLQATALGISKLELGENGGRII 1139 Query: 1089 FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 F K ++P +I L+QKQ + Y ++GP++LK L E R R + L Sbjct: 1140 FGAKPIIDPMAVIQLVQKQSKLYSMEGPSKLKLKLPLPEPADRFNAARGLLAAL 1193 >UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Betaproteobacteria RepID=B1XUT3_POLNS Length = 1181 Score = 1222 bits (3162), Expect = 0.0, Method: Composition-based stats. Identities = 553/1171 (47%), Positives = 746/1171 (63%), Gaps = 39/1171 (3%) Query: 8 TLPVKAGEQRLLGELTGAACATLVAEIAERHAGP---VVLIAPDMQNALRLHDEISQFTD 64 +AG + L G++ A L+A+ A R+ +V+ Q A RL +EI F Sbjct: 11 IPAPRAGRRFTFSGLIGSSDAALIAQTALRYRDKFSVMVIFCAQAQEAQRLLEEIPAFAP 70 Query: 65 Q-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFL 123 Q L DWE LPYD FSPHQD++S RL+TLY+L +++VPV T +QR+ P +FL Sbjct: 71 QLKTRLLPDWEILPYDHFSPHQDLVSERLATLYELLNGSCNIVLVPVTTALQRLGPPNFL 130 Query: 124 HGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLD 183 H ++G +L+ AL+ QL AGY V VM GEY+ RG L DLFPMGS LPYRLD Sbjct: 131 ASHTFFFRQGDKLNEAALKLQLQQAGYDPVSAVMRPGEYSIRGGLFDLFPMGSNLPYRLD 190 Query: 184 FFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEH 243 F DEI+ +R F+ D+QR+L V+ + LLP HEFP D + FR +WR+ FE Sbjct: 191 LFGDEIEQIRAFNPDTQRSLYPVKEVRLLPGHEFPFDDTSRTSFRGRWREVFEGDPSRCS 250 Query: 244 IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFP---ANTLLVNTGDLETSAERFQADTL 300 IY+ S G AGIE + PLFF E LF Y P LV+ GD+E + + F DTL Sbjct: 251 IYKDASLGIPSAGIESYLPLFFEEN-SSLFDYLPRSGDPVWLVSIGDVEETIKGFWKDTL 309 Query: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 360 +R+E D RP+LPP+ L+L VDE FS K + R+ L+ E + F +PD Sbjct: 310 SRYEFLKHDLDRPILPPKELFLDVDEFFSTSKPYARLSLENEAVEKNE------FFAVPD 363 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLAR------------IKIA 408 ++V + P+ LR + + + V+ +S GR+E++ +L + Sbjct: 364 ISVHRRDADPISRLRNVVASENVRVLICSDSAGRKESIRQLFDESNSVASVDGKSLYSLK 423 Query: 409 PQRIMRLDEA--SDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR-RTI 465 P+ + E S+ L+ +GF NL +I E++L +RR+ Sbjct: 424 PEGFDSIAEFIKSESLFGLVTAPLFNGFSWPSENLIVITEAELFTTTTRQRRKGKANENA 483 Query: 466 NPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGE-----YLMLTYANDAKLY 520 + D L ++L+EL IG PVVH EHG+GRY G+ L E +L L YA A LY Sbjct: 484 DSDMLFKDLSELKIGDPVVHAEHGIGRYQGLVLLNLAPPKEEPSFEEFLHLQYAGQATLY 543 Query: 521 VPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEG 580 VPV L +++RYAG ++APLH+LG W +A++KAA+++RD AAELL +YA RA ++G Sbjct: 544 VPVQQLQMVTRYAGSDPDSAPLHQLGSGQWGKAKRKAAQQIRDTAAELLGLYAARAIRKG 603 Query: 581 FAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMR 640 AF+ Y F +SF FE TPDQA AI AV+ DM MDRLVCGDVGFGKTEVA+R Sbjct: 604 HAFEFSAHDYAAFAESFGFEETPDQANAIAAVIGDMTSGTPMDRLVCGDVGFGKTEVALR 663 Query: 641 AAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA 700 A+F+AV KQVA+L PTTLLA+QH ++DRFA+WPVRI +SRF++ KE LA +A Sbjct: 664 ASFVAVMGGKQVAILAPTTLLAEQHVATWKDRFADWPVRIVELSRFKTTKEINVALAAIA 723 Query: 701 EGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIP 760 +G+ DI+IGTHKLL + +F +LGL+I DEEHRFGVR K+ +KA+RA VDILTLTATPIP Sbjct: 724 KGEADIIIGTHKLLSKETQFANLGLVIADEEHRFGVRQKDALKALRAEVDILTLTATPIP 783 Query: 761 RTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVE 820 RTL MAM G+R+ SIIAT P +RLA+KTFVR V+REA+LREI RGGQVY+L+N+VE Sbjct: 784 RTLGMAMEGLREFSIIATAPQKRLAIKTFVRREGDDVIREAVLREIKRGGQVYFLHNEVE 843 Query: 821 NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880 IQ L EL+PEARI++ HGQM ERELE VM +F QR N+L+CTTIIETGID+PTA Sbjct: 844 TIQNRKHALQELIPEARISVAHGQMHERELESVMREFVTQRTNILLCTTIIETGIDVPTA 903 Query: 881 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLG 940 NTII+ RAD FGLAQLHQLRGRVGRSHH+AYA+LL P+ +A++ AQ RL AI ++E+LG Sbjct: 904 NTIIMHRADKFGLAQLHQLRGRVGRSHHRAYAYLLVPNSEALSKQAQLRLNAIQAMEELG 963 Query: 941 AGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ 1000 +GF LA HDLEIRGAGE+LG++QSG + IGF LY E+L AV +L++G+E L Sbjct: 964 SGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTEMLNRAVKSLRSGKESDLLSPLQA 1023 Query: 1001 QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTL 1060 T+V L +P+LLP+D+ PDV+ RLS YKR A +EL ++ EL+DRFG LPD AR+ Sbjct: 1024 TTDVNLGVPALLPEDYCPDVHERLSLYKRFAGTHDFSELMGLREELVDRFGDLPDQARSF 1083 Query: 1061 LDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLK 1120 + RLR + GI+K++ I+F ++P +I L+Q H +L+G +LK Sbjct: 1084 YETHRLRLEMAGFGIKKIDATPVSIQIQFIPNPPIDPMKIIQLIQSSK-HIQLNGQDKLK 1142 Query: 1121 FI----QDLSERKTRIEWVRQFMRELEENAI 1147 + ++ + R++ +RQ +R L E+A+ Sbjct: 1143 VLPQKDREFERLEQRLDAIRQVLRRLNESAV 1173 >UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=Gammaproteobacteria RepID=Q6FCF0_ACIAD Length = 1171 Score = 1219 bits (3154), Expect = 0.0, Method: Composition-based stats. Identities = 574/1142 (50%), Positives = 779/1142 (68%), Gaps = 12/1142 (1%) Query: 10 PVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN 69 +KAGE+R +G L G++ A L EI ++H +V++ + Q+ +L E+ F Sbjct: 29 QLKAGEKRWIGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHLAQLESELE-FYGVKPTI 87 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 DWE LPYD SPHQDI+S RL+ L +P Q GVL++ +TL QRV P ++ G Sbjct: 88 FPDWEILPYDRLSPHQDIVSERLAILSNMP--QTGVLLISASTLAQRVAPIGWVLGEHFD 145 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 ++ GQ+L + + +L AGY VD V +HGE+A RG+++D++ G E P R+D FDDEI Sbjct: 146 IQVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQEQPIRIDLFDDEI 205 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF-EVKRDPEHIYQQV 248 D+L+ FD ++QRT E ++ +LPA EFP K +FR ++ + F IYQ V Sbjct: 206 DTLKFFDPETQRTTENLKQFRILPAKEFPL-KEGRSIFRERYAEAFPTANPKKNPIYQDV 264 Query: 249 SKGTLPAGIEYWQPLFFS----EPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFE 304 G G+E++ PLFF E +Y P N +++ L+ S D + R+E Sbjct: 265 LDGIASPGVEFYLPLFFEKGQMESQSYFTAYLPRNCIVITNDALDESLTSCWKDVVQRYE 324 Query: 305 NRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQ 364 +R + +P+L P+ L+L + + +LK +PR+ + +E + + NL + LAV Sbjct: 325 SRRHNIDQPILSPEHLFLMPNMVLEQLKQFPRIHVSSEIIAERVGGINLPVSQPVKLAVD 384 Query: 365 AQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY 424 +++ P + + K++ + PV+ ES GRRE+L + L + D + Sbjct: 385 PKKEHPFEVVTKYINEVNHPVLLVAESAGRRESLKDALRPSLGDIPNVEGFDAFVKQQYA 444 Query: 425 LMI--GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQP 482 + I + G V LA+I E+ L RV +RR+ ++ ++ + LIR+L EL IG P Sbjct: 445 IAITNAPLDRGLVL-SSQLAVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLTELSIGAP 503 Query: 483 VVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPL 542 VVH+++GVGRYAG+ TLE E+L L YA+ AK+YVPV++LHLISRY+GG + APL Sbjct: 504 VVHIDYGVGRYAGLITLEIDDQDHEFLQLDYADAAKVYVPVTNLHLISRYSGGDPDLAPL 563 Query: 543 HKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETT 602 HKLG DAWS+A++KA E++ DVAAELL I A+R +K GFAF+ D+ Y F F +E T Sbjct: 564 HKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDQSPYMQFSSGFAYEET 623 Query: 603 PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLA 662 DQA AI A L DM MDRLVCGDVGFGKTEVAMRAAFLAV N+KQVAVLVPTTLLA Sbjct: 624 LDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLLA 683 Query: 663 QQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 722 QQHY++F+DRFA+WP+RIE++SRF S K + + ++ GK+DI++GTHKLLQ V+F D Sbjct: 684 QQHYESFKDRFADWPIRIEVLSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQETVQFHD 743 Query: 723 LGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR 782 LGL+IVDEEHRFGVR KERIKAMRA+VD+LTLTATPIPRTLNMA SGMRDLSIIATPPAR Sbjct: 744 LGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPAR 803 Query: 783 RLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 842 RLAVKTFV+E+ VREAILRE+LRGGQVY+L+N+V++I++ AE + LVPEAR+A+ H Sbjct: 804 RLAVKTFVQEHTDDSVREAILRELLRGGQVYFLHNEVDSIERTAENIRNLVPEARVAVAH 863 Query: 843 GQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGR 902 GQMRERELE+VM F+H+ +NVLVC+TIIETGID+P ANTII+ERAD GLAQLHQLRGR Sbjct: 864 GQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIMERADKLGLAQLHQLRGR 923 Query: 903 VGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEE 962 VGRSHHQAYA+LL P K + DA+KRL+AI LGAGF LAT DLEIRGAGELLGE+ Sbjct: 924 VGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELLGEQ 983 Query: 963 QSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNT 1022 QSGSM+ IG+SLYME+LE A A++ G+ P+ + S E+ L MP+L+PD+++ DV+ Sbjct: 984 QSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDEYLGDVHQ 1043 Query: 1023 RLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNE 1082 RL FYKRI++ T+ +L+ I++ELIDRFG LP + L + +LR QA++LGI K++ N Sbjct: 1044 RLLFYKRISNTDTQEKLDNIRMELIDRFGTLPVSVKQLFHVHQLRLQAEELGITKIDLNS 1103 Query: 1083 KGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 +GG IEF++ V +I L+QKQP +YR++G RLK L E RI++ + +L Sbjct: 1104 QGGYIEFSQDTPVQAISIIQLMQKQPTYYRMEGGQRLKVTVQLQEYDKRIQFAHALLSKL 1163 Query: 1143 EE 1144 + Sbjct: 1164 IQ 1165 >UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Halothermothrix orenii H 168 RepID=B8D013_HALOH Length = 1170 Score = 1200 bits (3106), Expect = 0.0, Method: Composition-based stats. Identities = 416/1156 (35%), Positives = 664/1156 (57%), Gaps = 33/1156 (2%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMN 69 + G+ + + G A + I ++ V+++ D + R ++++ ++ V+ Sbjct: 20 INQGQNLFIEGMPGNRFAFITGNILQKIDKTVLMVTYDTVHLNRYYEDLIRMMPEEKVLL 79 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQ-LPTMQRGVLIVPVNTLMQRVCPHSFLHGHAL 128 + E LP++ P + R+ L + + VL+ L++++ P S + Sbjct: 80 YPESEVLPHEQIVPDLAETAQRIRVLQSVITDKKPAVLLTTATALLRKMIPVSTFKKYIF 139 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 ++ GQ + + +L +GY V+ V GE++ RG ++D+FP+ P+R++ F DE Sbjct: 140 SLQVGQEIDLNKFTEKLRISGYNRVEMVENPGEFSIRGGIIDIFPLSVNKPFRIELFGDE 199 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE------------ 236 ID++R F+ +QR+ +E + + PA E I+ + F Sbjct: 200 IDTIREFEPATQRSRRSLEKVFISPAREIIVSPRQIKKAIPAIKSDFNDTINTLYENNYK 259 Query: 237 -----VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETS 291 ++ + +++++ G E + P ++ E L L Y P ++++ +T Sbjct: 260 EEGDYLREKRDESLEKLAERDDFPGSEQFLPYYYPE-LHTLIDYLPDDSVIFFDQAEKTW 318 Query: 292 AE-RFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKT---EHLPTK 347 + D L + ++ L +L + L +LK++ V T E L Sbjct: 319 QRIKGFIDELQETQATLLEQGSVLPTYHKNFLSREALLDKLKDFNFVYSSTSINEELSWV 378 Query: 348 AANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKI 407 + F + + +R+ ++T V ++ S + + L ++ Sbjct: 379 KDFEKVSFTTRSVEPYHGKLDLFAERVRELVDT-GYRVFVTLNSSNKARRVVNYLKENEM 437 Query: 408 APQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINP 467 A R +E S +M G+ GF+ NLAL E ++LG +RRQ + I Sbjct: 438 AVAF--RREEFSRERIIVMPGSLSEGFIIDDINLALFTEKEVLGNPQKKRRQLN--DIEN 493 Query: 468 DTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLH 527 I ++ EL +G VVH HG+G+Y G+ TL G +YL+L YA + KLYVP + Sbjct: 494 GVKISSIDELQVGDYVVHENHGIGKYLGVKTLAVQGQHKDYLVLKYAGEDKLYVPTDQFN 553 Query: 528 LISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 587 L+ +Y G + L+KLGG+ W + +QK E V+++A LL++YA+R +G++F D Sbjct: 554 LVQKYIGADNKPPKLYKLGGNDWKKVKQKVKESVKEMAIGLLELYAERETIKGYSFSDDT 613 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 + F ++FP+E TPDQ +AI V +DM MDRL+CGDVG+GKTEVA+RAAF AV Sbjct: 614 VWQKEFEEAFPYEETPDQLKAIEEVKNDMESATPMDRLLCGDVGYGKTEVAIRAAFKAVM 673 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 + KQ AVLVPTT+LAQQHY+ F +R N+P+ IEMISRF++ EQ ++L ++A G++DI+ Sbjct: 674 DGKQTAVLVPTTILAQQHYNTFSERMKNYPINIEMISRFKTPAEQREVLKKLAAGEVDII 733 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 IGTH+LL DV F DLGLLI+DEE RFGV HKE+IK ++ NVD+LT+TATPIPRTL+MA+ Sbjct: 734 IGTHRLLSRDVVFNDLGLLIIDEEQRFGVSHKEKIKDLKRNVDVLTMTATPIPRTLHMAL 793 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 G+RD+S+I TPP R ++T++RE++ ++R+A+ +E+ R GQVY+++N VE+IQ+ A Sbjct: 794 VGVRDMSVIETPPENRYPIRTYIREFNKELIRDAVRKELGREGQVYFVHNRVEDIQEQAT 853 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 + +LVPE R+A+ HGQM E +LER+M DF++ +++VLVCTTIIETG+DIP NTII+ R Sbjct: 854 MIKKLVPECRVAVAHGQMNEHKLERLMLDFYNHQYDVLVCTTIIETGLDIPNVNTIIVNR 913 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 AD GLAQL+QLRGRVGRS+ AYA+LL + + A+KRL AI +LG+GF +A Sbjct: 914 ADQMGLAQLYQLRGRVGRSNRIAYAYLLYEKDRVLPEVAEKRLRAIKEFTNLGSGFKIAM 973 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR 1007 DLEIRGAG LLG EQ G + ++GFSLY +LLE AV+ LK + D + E+EL Sbjct: 974 RDLEIRGAGNLLGPEQHGHIASVGFSLYCKLLEGAVEELKGKEK----DKGITRVEIELD 1029 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 + + LPD++I D ++ YK+I + K E+E++ ELIDRFG P+P LL I++L+ Sbjct: 1030 IDAYLPDEYITDSRQKIDIYKKIMALKDFEEVEDMIDELIDRFGDPPEPVLNLLGISKLK 1089 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE 1127 +A KLGI K+ N+K F + ++++ ++ ++ + ++ R LS Sbjct: 1090 VKASKLGIDKISRNKKFVEFRFMKPDYLDGDKVVKFVKNHSRKVKIKSGKRPVIAYRLSP 1149 Query: 1128 RKTRIEWVRQFMRELE 1143 +T I+ + + + EL+ Sbjct: 1150 GRTTIKRLEKILSELK 1165 >UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=beta proteobacterium KB13 RepID=B6BUC0_9PROT Length = 1120 Score = 1187 bits (3070), Expect = 0.0, Method: Composition-based stats. Identities = 476/1119 (42%), Positives = 710/1119 (63%), Gaps = 22/1119 (1%) Query: 29 TLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL-ADWETLPYDSFSPHQDI 87 +E++ ++ P+V+ D A RL E+ F +V+++ DWETLPYDS SPH D+ Sbjct: 21 FYCSELSAKNT-PLVIFTKDSYVAARLQQEMLWFNQNLVVSMIPDWETLPYDSVSPHPDL 79 Query: 88 ISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDS 147 IS RL +L+ + +LI+P + + + P ++ ++ KGQ++ ++L+ L Sbjct: 80 ISDRLKSLFLVTQKAFDILIIPATSALNHLPPKQYITQNSFFYSKGQKVDLESLKMVLIE 139 Query: 148 AGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVE 207 GY +V +V GE+A RG L+DLFPMGS +PYR+DFFD EI+S++ FDV++Q+++ Sbjct: 140 NGYINVQKVFHPGEFAVRGGLIDLFPMGSTIPYRIDFFDTEIESIKTFDVETQKSIYPTN 199 Query: 208 AINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSE 267 I +LPA E P + +IE FR +R+ F IY +S AG+E++ PLF+ E Sbjct: 200 KIEILPARECPLTELSIETFRKNYRERFSGDPSKSPIYTNISNKIPFAGMEWYLPLFYQE 259 Query: 268 PLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDEL 327 +F Y P +TL+ L +S + + D RF+ D RP+L P+ + + + Sbjct: 260 -TNTIFDYLPDDTLIDVPFKLSSSIDHYWLDAQTRFKMYAYDIERPILNPEEIMMDSVKF 318 Query: 328 FSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVF 387 +L + + N P + K + ++ ++ Sbjct: 319 HQDLNRFKNL--------------NFDVIDNPLPKITIDYKDGYKNIADYINQCPKKIII 364 Query: 388 SVESEGRREALGELLARIKIAPQRIMRLDEASD-RGRYLMIGAAEHGFVDTVRNLALICE 446 S ES GRRE + ++L ++ +R ++ L+ + GF D + E Sbjct: 365 SAESLGRRETIHKMLTECDLSLKRSESINILDPVIDHLLIQSPLKEGFSD--EYFEVFTE 422 Query: 447 SDLLGERVARRRQD-SRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGIT 505 DL + + + + + N + +I++L+E+ +G PVVH HGVGRY G+ L+ G Sbjct: 423 YDLFPDFIHQEKSKYKSKDYNAEVVIKDLSEISVGDPVVHENHGVGRYQGLVQLDMLGSI 482 Query: 506 GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVA 565 E+L+LTY + KLYVPV+ L+ ISRY GG E+APLHKLG W + ++KA ++V D A Sbjct: 483 NEFLLLTYEKEDKLYVPVTQLNSISRYTGGPIESAPLHKLGSGQWEKEKRKALKQVYDTA 542 Query: 566 AELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRL 625 AELL++YA R K+G K D +YQ F + FPFE TPDQ AI +V+ DM MDRL Sbjct: 543 AELLNLYALREKKKGLVSKIDFLEYQKFANEFPFEETPDQMLAIESVIKDMESARPMDRL 602 Query: 626 VCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISR 685 +CGDVGFGKTEVAMRAAF+++ N++QV +LVPTTLLA QHY+NF DRF+++PV IE ISR Sbjct: 603 ICGDVGFGKTEVAMRAAFISIMNNRQVIILVPTTLLASQHYNNFVDRFSSFPVEIEEISR 662 Query: 686 FRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAM 745 F+S K+Q ++L ++A GK+DI+IGTH+LLQ D+K ++GL+IVDEEHRFGVR KE +K Sbjct: 663 FKSNKQQNEVLEKLANGKVDIVIGTHRLLQKDIKIDNIGLIIVDEEHRFGVRQKEMLKKF 722 Query: 746 RANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILRE 805 + N D L LTATPIPRTL+M++ G+RD SII+TPP +RL++KT V+ + +++EA+ RE Sbjct: 723 KTNTDFLALTATPIPRTLSMSLEGLRDFSIISTPPQKRLSIKTMVKSFSEGIIKEALTRE 782 Query: 806 ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 865 RGGQ Y+L+NDV +I +E+L +++P+A++AI HGQM+E+ELERVM DFH QRFN+L Sbjct: 783 FNRGGQAYFLHNDVSSIYAISEKLTKIMPDAKVAIAHGQMKEKELERVMQDFHQQRFNLL 842 Query: 866 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTD 925 +CTTIIETGIDIPT+NTIII AD FGL+QLHQLRGRVGRSHHQA+A+LL +++T+ Sbjct: 843 LCTTIIETGIDIPTSNTIIINNADRFGLSQLHQLRGRVGRSHHQAFAYLLIDENRSLTSK 902 Query: 926 AQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDA 985 A+KRLEAI LEDLG+G+ LA HDLEIRGAGE+LG++QSG + IGFS+Y+++L AV Sbjct: 903 AKKRLEAIQYLEDLGSGYFLAMHDLEIRGAGEILGDQQSGEIHEIGFSMYLKMLNRAVTH 962 Query: 986 LKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVE 1045 LK + ++ ++ + P++L + + D N RL YKR++S ++ +L+ IK E Sbjct: 963 LKNNETLDINADYNENNDINIHAPAILTNQYCGDPNERLVIYKRLSSCESLEDLQMIKEE 1022 Query: 1046 LIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQ 1105 LIDRFG+ P+ L I +R + L + K++ +K + F EKN+++P +I L+Q Sbjct: 1023 LIDRFGVAPEQTENLFIIHHIRIITKDLDVTKIDAGKKTISLNFREKNNLDPLKIIDLVQ 1082 Query: 1106 KQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 H +LDGP ++ D + ++ ++ + E+++ Sbjct: 1083 TNK-HIKLDGPNKITLAGDFEDPFDKLNNIKSLVGEIKD 1120 >UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Firmicutes RepID=B0TBA7_HELMI Length = 1247 Score = 1182 bits (3058), Expect = 0.0, Method: Composition-based stats. Identities = 414/1160 (35%), Positives = 666/1160 (57%), Gaps = 39/1160 (3%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS-QFTDQMVMNL 70 + Q+ + L+ + L+A +A R P+ ++ +Q A R+ +++ D+ V++ Sbjct: 29 RGRRQQAVFGLSASQRTALMATMARRLGHPLCVVTHSIQQARRIAEDLQVLLPDEEVLSF 88 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVM 130 E +PY+ + ++++ RL L +L + ++ ++ LM+++ P + + L Sbjct: 89 PATEVMPYEVLTSSHELLAQRLDVLSRLARREPVTVVTTIDALMKKLVPPAVMAEADLEF 148 Query: 131 KKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEID 190 G R+ ++ +L GY+ V G+Y+ RG +LD++P+ LP R++FFDDEID Sbjct: 149 IVGCRMELSHIQERLHYLGYQRTPMVEAPGQYSLRGGILDVYPLTRSLPARIEFFDDEID 208 Query: 191 SLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP--------- 241 S+R+FDV++QR+ E+ + PA E + R + R+ Sbjct: 209 SIRLFDVETQRSKEKQDRYAAGPAREMLLAAETLAQGRRELEKEAATARERLLQSGCQEA 268 Query: 242 --------EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETS 291 + +Q+ +G G+E +Q F+ + + LFSY T++ L+ S Sbjct: 269 AARLQAKIDSYLEQLDEGIWVEGLEQFQNFFYPDQV-SLFSYLHPETIVFWDEPTRLKES 327 Query: 292 AERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLK--TEHLPTKAA 349 AE + + F ++ L ++++ ++L EL + L + + Sbjct: 328 AEAKEQEISETF-VHLLEAGSVLPAQRNVYRHYNDLVEELAGHRVIHLALLAKKIERVTV 386 Query: 350 NANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAP 409 + F + + L+ + + V+ S RR+ + + L + Sbjct: 387 EDTIQFNAKNMHPFLGKLDMLAEELKNY-KKRRMAVLILAASTVRRDRICDALRDYGVEA 445 Query: 410 QRIMRLDEASDRGRYLM-IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPD 468 Q + +D G + +G E GF L LI + ++ G +R + R++ Sbjct: 446 QPVPGIDAELHPGTVAVGVGQLEAGFELVQARLVLITDLEIFGRE--KRPRKPRKSAREG 503 Query: 469 TLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHL 528 I + +L +G VVH+ HG+GRY G+ LE GG+ +YL++ YA + +LYVP +HL Sbjct: 504 QRIDSFVDLALGDYVVHVNHGIGRYMGVEKLEVGGVHKDYLVIRYAGEDRLYVPTDQVHL 563 Query: 529 ISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDRE 588 I +Y G L++LGG+ W + +QK + VR++A +LL +YA R +K G+A+ D Sbjct: 564 IQKYVGAEGVAPKLYRLGGNEWHKVKQKVKDSVRELAGDLLKLYAARESKPGYAYSADTP 623 Query: 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 + F ++FP+E TPDQA++I V +DM + AMDRL+CGDVG+GKTEVA+RAAF AV + Sbjct: 624 WQKEFEEAFPYEETPDQARSIAEVKTDMEKAKAMDRLLCGDVGYGKTEVAIRAAFKAVQD 683 Query: 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 708 KQVA+LVPTT+LAQQHY+ FR+RF+ +PVR++++SRFRS KEQ L + G++DI+I Sbjct: 684 GKQVAILVPTTILAQQHYNTFRERFSGYPVRVDVLSRFRSPKEQKASLEGLKSGEVDIVI 743 Query: 709 GTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMS 768 GTH+L+ +DV FKDLGLLI+DEE RFGV HKE+IK ++ NVD+LTL+ATPIPRTL+M++ Sbjct: 744 GTHRLVSNDVSFKDLGLLIIDEEQRFGVAHKEKIKHLKENVDVLTLSATPIPRTLHMSLV 803 Query: 769 GMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAER 828 G+RD+SII TPP R V+T+V EY+ ++REA+ RE+ RGGQVYY+ N +E++ + A Sbjct: 804 GLRDMSIIETPPEDRYPVQTYVVEYNPELIREAVRRELNRGGQVYYVRNRIEDLDRIARD 863 Query: 829 LAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 L LVP+ARI +GHG+MRE +LE+VM DF +++LVCTTIIETG+DIP NT+I++ A Sbjct: 864 LGALVPDARIVVGHGKMREDQLEQVMLDFLEGEYDILVCTTIIETGLDIPNVNTLIVDGA 923 Query: 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATH 948 D GL+QL+QLRGRVGRS+ AYA+ K +T A+KRL AI +LG+GF +A Sbjct: 924 DLMGLSQLYQLRGRVGRSNRLAYAFFTYRKDKVLTEVAEKRLHAIREFTELGSGFKIAMR 983 Query: 949 DLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRM 1008 DLEIRG G LLG EQ G M ++GF LY LLE A+ LK + + +T V++R+ Sbjct: 984 DLEIRGVGNLLGPEQHGQMASVGFDLYCRLLEEAIQELKGAK-----PEEAPETFVDIRV 1038 Query: 1009 PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQ 1068 + +PD ++ D +++ FYKR+ +A+T +++E ++ E+ DRFG P+P L+ ++R++ Sbjct: 1039 DAFIPDGYMADSLSKVQFYKRLLAARTVDQVEALEEEMEDRFGDPPEPVENLVSLSRIKA 1098 Query: 1069 QAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSER 1128 Q+ G+ ++ ++ I F V + L+Q + + Sbjct: 1099 YGQQAGVSAVQQEKEELRIRFFPHAKVEAKAVSALVQHLGRKVNFSATGGFEIRIKPGRV 1158 Query: 1129 KTRIEWVRQFMRELEENAIA 1148 K R + +R L E+++A Sbjct: 1159 KPR-----ELLR-LLEHSLA 1172 >UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Acidithiobacillus RepID=B7J4B9_ACIF2 Length = 1149 Score = 1179 bits (3050), Expect = 0.0, Method: Composition-based stats. Identities = 554/1155 (47%), Positives = 751/1155 (65%), Gaps = 21/1155 (1%) Query: 1 MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60 M P +AG R ++ GAA + L A++ + P++++ P+ ++ E Sbjct: 1 MDRSLSLGTPPRAGAARAFSQIYGAADSWLAAQMTRQWQRPLLILLPNARDVEEWQREWR 60 Query: 61 QFTDQ--MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVC 118 F + D E LPYD +P D ++RL+TL LP + GV + P++ ++QR+ Sbjct: 61 FFAPDLPAPLVFPDREILPYDRLAPPADATATRLATLATLPEWR-GVCLAPLSAVLQRLP 119 Query: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL 178 P SFL HA V+ G LS + R +L AGYR+V +V E GE A RG ++DLFP GS L Sbjct: 120 PRSFLDQHAFVLAVGDHLSPEGFRQRLIDAGYRNVSEVSEAGELAWRGGIIDLFPSGSPL 179 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK 238 PYR++ FD ++S+R FD ++QRTL++VE ++LLPA E P D AA++ FRS++R F Sbjct: 180 PYRIELFDRVVESIRAFDPETQRTLQKVEGVSLLPAREVPVDTAALQEFRSRFRARFSGD 239 Query: 239 RDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQAD 298 IY+ S+G P G E++ PLFF E L +FP + ++ LE SA + D Sbjct: 240 PQRAEIYRAASRGQAPQGAEHYLPLFFPE-CSHLLMHFPVDGVVFLPPGLEASARHIRQD 298 Query: 299 TLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKL 358 R+E R D + P+LPP L L E L+ RV + E L L Sbjct: 299 WQERYEERSHDTVHPILPPDELLLPPSEWEDVLRGRARVYGQQE-----GDAERLPTAPL 353 Query: 359 PDLAVQAQQKAPLDALRKFLETF--DGPVVFSVESEGRREALGELLARIKIAPQRIMRLD 416 PDL +APL +L FL G V+ + ES GR+EAL E L + + P R+ Sbjct: 354 PDL--HGSPEAPLASLDTFLRHLPTTGRVILAAESPGRQEALSERLGKSGLLPSRVHDWP 411 Query: 417 E--ASDRGRYLMIGAAEHGFVDTVR---NLALICESDLLGERV-ARRRQDSRRTINPDTL 470 E A + + E G + LAL+ E+ + G+RV A+RR + R + + L Sbjct: 412 EFLAGTERIAITVAPLERGLLIKENGLVRLALVSEAQIFGDRVFAQRRSANARQRSIEGL 471 Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGM-TTLEAGGITGEYLMLTYANDAKLYVPVSSLHLI 529 +R+L EL G V H E+G+GR+ GM T + G EY++L YAN +YVP L I Sbjct: 472 VRDLGELQPGDAVTHEEYGIGRFQGMATPFASQGDINEYVVLEYANGDLVYVPADHLDRI 531 Query: 530 SRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQ 589 +RY G L +LG + W + + KA +K D A+ELLDIYA+RAA+ G AF + Sbjct: 532 ARYVGNGATEPVLSRLGSNHWEKVKAKARQKAVDAASELLDIYARRAARTGRAFPEPDDA 591 Query: 590 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH 649 Y F FPFE TPDQ QAI+AV++DM P MDRLVCGDVGFGKTEVA+RAAFLA + Sbjct: 592 YWEFVSRFPFEETPDQQQAIDAVIADMTSPHPMDRLVCGDVGFGKTEVALRAAFLAAHSG 651 Query: 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIG 709 QVAVLVPTTLLAQQHY+NFR+R A P+R+E++SRF++AK Q+L V+ G++DILIG Sbjct: 652 AQVAVLVPTTLLAQQHYENFRNRCAGLPLRVEVLSRFQNAKTHKQVLTAVSVGEVDILIG 711 Query: 710 THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSG 769 TH+LLQ DV F DLGLLI+DEEHRFGVR KERIKA+RA VDILTLTATPIPRTLN++++G Sbjct: 712 THRLLQKDVAFHDLGLLILDEEHRFGVRQKERIKALRAEVDILTLTATPIPRTLNLSLAG 771 Query: 770 MRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 +RDLSIIATPP RR V+TFV+ +D V EA RE+ RGGQVY+L+N+V +I++ A L Sbjct: 772 LRDLSIIATPPQRRQPVRTFVQIWDDATVIEACQRELHRGGQVYFLHNEVRDIERMAATL 831 Query: 830 AELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 L+PEAR+ + HGQM E ELE VM DF+HQRF++L+CTTIIE+GID P ANTI+I RAD Sbjct: 832 RRLLPEARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTTIIESGIDNPHANTILINRAD 891 Query: 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHD 949 FGLAQLHQLRGRVGRSH +AYA+L TP +AM+ DA++RL+AI SLEDLG GFALA+HD Sbjct: 892 KFGLAQLHQLRGRVGRSHQRAYAYLFTPDLRAMSDDARRRLDAIQSLEDLGVGFALASHD 951 Query: 950 LEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP-SLEDLTSQQTEVELRM 1008 LEIRGAGELLGEEQSG M+ +GF+L+ME L++AV+A++AGR+P SLE+ + E+ L Sbjct: 952 LEIRGAGELLGEEQSGHMDEVGFTLFMEWLDDAVEAIRAGRDPRSLEEQRTSGPEIHLNT 1011 Query: 1009 PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQ 1068 P+L+PDD++PDV+ RL YKR++ +++ + EI VE+IDRFG +P PARTLL RLR Sbjct: 1012 PALIPDDYLPDVHLRLQLYKRLSDVRSDTAIGEIMVEMIDRFGPIPAPARTLLCQTRLRL 1071 Query: 1069 QAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSER 1128 A + GI +++ G ++FA +N V P +I L+Q+ Y+LDG RL+ +DL + Sbjct: 1072 VAIQTGIEQIDAGPAGARLQFAAENQVAPDKIIRLIQQPHSIYQLDGEHRLRIRRDLPDG 1131 Query: 1129 KTRIEWVRQFMRELE 1143 + R + + Q + +L Sbjct: 1132 EARCQELLQLIDQLR 1146 >UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Proteobacteria RepID=A5WFY6_PSYWF Length = 1271 Score = 1173 bits (3034), Expect = 0.0, Method: Composition-based stats. Identities = 546/1225 (44%), Positives = 755/1225 (61%), Gaps = 93/1225 (7%) Query: 9 LPVKAGEQRLLGELTGAACATLVAEIAERHAGPV-----VLIAPDMQNALRLHDEISQFT 63 P+ ++R L AA + +A +++ V V++ D ++ E++ F Sbjct: 51 FPIDKAQKRWLYPAYAAAGSLWLASLSDCPVANVANRLKVVVTKDQNQLNQIETELA-FC 109 Query: 64 DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFL 123 DWETL YD SPHQDI+S R++ L +P ++G+L++ + TLMQR+ P S+L Sbjct: 110 GVDAYVFPDWETLTYDELSPHQDIVSERINLLTDMP--KQGILLISIQTLMQRMAPPSWL 167 Query: 124 HGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLD 183 G + G + R L +AGYR VD V E GE+A RG+++D+F MG P RLD Sbjct: 168 IGQHFDLSVGDIFDINQQREMLAAAGYRAVDNVFEPGEFAVRGSVIDIFAMGQPFPLRLD 227 Query: 184 FFDDEIDSLRVFDVDSQRTL--------------------------------------EE 205 FD+EI+++R F+ +QRTL + Sbjct: 228 LFDNEIETIRFFNPQTQRTLSTQTLMDLVAGRADANSANQHDLTVESLSLLHKLPDVSKP 287 Query: 206 VEAINLLPAHEFPTDKAAIELFRSQWRDTF-EVKRDPEHIYQQVSKGTLPAGIEYWQPLF 264 + +LPA EFP D+ E FR+ + F V +++ V G +G+EY+QPLF Sbjct: 288 ITQFQILPAKEFPLDE-GKETFRNNFAAMFPNVSSRRFELHKDVMAGIASSGLEYYQPLF 346 Query: 265 FS----EPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSL 320 F LFSYFP +TL + + + + + R+E R D +P++ P L Sbjct: 347 FEIEDWSQNGHLFSYFPKDTLFIIDENTAEAQADYWSQIQRRYEERRHDIDKPIVEPTLL 406 Query: 321 WLRVDELFSELKNWPRVQLKTEHLP----TKAANANLGFQKLPDLAVQAQQKAPLDALRK 376 +L + L L +PRV L L T++ L P+L V Q+ PL L Sbjct: 407 YLPSNSLNEMLNAYPRVILSQSDLAAADNTQSGKVKLPALMPPELPVSHQKAEPLLELLN 466 Query: 377 FL----------ETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY-- 424 + P++ E+ GRRE L EL K+ Q L + Y Sbjct: 467 YASAGWDDNTTEAALARPILVVAETAGRREILLELFRG-KLNVQTFDSLQQFLGSELYQQ 525 Query: 425 -----------------LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINP 467 L I E G V ++L++I E+ L G +V + R+ + ++ Sbjct: 526 SLIKNTASASNTKPTVGLTIAPIERGAVI-DQHLSIISETQLFGRQVLQTRRRRQSDVSE 584 Query: 468 DTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLH 527 + L++++ EL G PVVH++ G+GRY G+ TL+ G E++ L YA+DA +YVPV++L Sbjct: 585 EFLVKSVTELTEGSPVVHIDQGIGRYHGLITLDIGEGEQEFIHLKYADDASIYVPVANLQ 644 Query: 528 LISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 587 LISRY+GG APLHK+G W +A+QKA E++ DVAAELL++ A+R AKEG FK + Sbjct: 645 LISRYSGGDPALAPLHKIGSGKWDKAKQKALEQIHDVAAELLNMQARRQAKEGIHFKVET 704 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 QY+LF F FE TPDQA AI+AV+ DM Q MDRL+CGDVGFGKTEVAMRAAF+AV+ Sbjct: 705 AQYELFASQFAFEETPDQANAIDAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFIAVN 764 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 + QVAVLVPTTLLA QH DNF+DRFA+WP+R+E +SRF K Q Q+L ++A GK+DI+ Sbjct: 765 SGYQVAVLVPTTLLAGQHEDNFKDRFADWPIRVETLSRFGGKKYQDQVLEDLAAGKVDIV 824 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 IGTHKLLQ DVKF +LGL+IVDEEHRFGVRHKERIKA++++VD L++TATPIPRTLNMA+ Sbjct: 825 IGTHKLLQKDVKFANLGLMIVDEEHRFGVRHKERIKAIQSDVDSLSMTATPIPRTLNMAL 884 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 +GMRD+SIIATPPARRL++KTFV + + +++EAILRE+LRGGQVY L+NDV +I++ AE Sbjct: 885 TGMRDMSIIATPPARRLSIKTFVMQKTNQLMKEAILRELLRGGQVYLLHNDVASIERMAE 944 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 + ELVPEAR+ + HGQM ER LE+VM F+H++FNVLVCTTIIETGID+P ANTIIIER Sbjct: 945 NIRELVPEARVGVAHGQMNERGLEQVMQQFYHKKFNVLVCTTIIETGIDVPNANTIIIER 1004 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 AD FGLAQLHQLRGRVGRSHHQAY +LL P K + DA+KRL AI LGAGF LA+ Sbjct: 1005 ADKFGLAQLHQLRGRVGRSHHQAYCYLLVPSVKGLKGDAKKRLTAIERANTLGAGFMLAS 1064 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR 1007 DLEIRGAGE+LG++QSG+M+ IGFSLYM++LE A A+KAG+EP L S +++ L Sbjct: 1065 EDLEIRGAGEILGKQQSGNMQAIGFSLYMDMLERATKAIKAGKEPDLNTPLSLTSDINLH 1124 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 +L+P+D++ DV RL FYKRI++A+ + L +I+ E+IDRFG LPD + L I +LR Sbjct: 1125 SSALIPEDYVNDVPQRLLFYKRISNAEDKEVLTDIRTEMIDRFGALPDQTKQLFAIHQLR 1184 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQ--DL 1125 A+ L I K++ ++EFA V +I L+Q YR++G + +++ L Sbjct: 1185 VLAEPLAIYKIDATSNSVILEFAPDTPVEALAIIQLIQSDGNRYRMNGASGIRYTNPDKL 1244 Query: 1126 SERKTRIEWVRQFM----RELEENA 1146 R+E VR+ + R +++ A Sbjct: 1245 DTPAKRVEVVRELLNHFTRHVKDKA 1269 >UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bacteria RepID=A5CVJ9_VESOH Length = 1145 Score = 1172 bits (3033), Expect = 0.0, Method: Composition-based stats. Identities = 489/1153 (42%), Positives = 740/1153 (64%), Gaps = 19/1153 (1%) Query: 1 MPEQYRYTLPVKA---GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHD 57 MP Y Y+ VK G + G L G+A A + E A + +++IA D+ + + Sbjct: 2 MP--YLYSNKVKCFELGRKMYWGSLYGSADALALIEFANQ-QHIILVIANDIVHFDNFYK 58 Query: 58 EISQF-TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQR 116 + + TD ++ +WE L YD FSPH DI SSRL TL +L +++RG++I + +L Sbjct: 59 SLKFYNTDLEILKFDNWEVLAYDYFSPHPDITSSRLKTLSKLKSLKRGIVITTLESLFSH 118 Query: 117 VCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176 +CP F ++L ++ +++ D +L GY+HV VMEHGE+ R +L+DL+PMG+ Sbjct: 119 LCPLEFSKKYSLNIRINDKINPDTFSEKLLKIGYKHVITVMEHGEFNMRNSLIDLYPMGT 178 Query: 177 ELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE 236 + YR++ F+ +++S+R F+ +QR+ ++ I LLPA EF TD +IE F++ ++ F Sbjct: 179 KTAYRINLFNQKVESIRAFNTSTQRSKTKIPEITLLPAREFATDNTSIEYFKTNYKKIF- 237 Query: 237 VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQ 296 D IY +VS+G LP GIE++ PLFF LF Y NT++ + + ++ Sbjct: 238 --NDNGFIYTEVSEGRLPGGIEFYLPLFF-HTTNTLFDYLADNTIIATSKEFSNLVDKTY 294 Query: 297 ADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQ 356 + RFEN R L Q ++L + LFSE+K ++ + T L K + N Sbjct: 295 NEIRERFENAKKSLDRAPLDIQRVFLSKELLFSEVKKKSQIIISTSKLENKKQHFNFNSS 354 Query: 357 KLPDLAVQAQQKAPLDALRKFLETF----DGPVVFSVESEGRREALGELLARIKIAPQRI 412 P + ++ Q PL F++ F + ++ ES R+ L +LL + + Sbjct: 355 LPPPVRIELQTNNPLSKFSTFVKRFTNKQNKKILIVCESLDRQNVLSDLLINHNLNTYSV 414 Query: 413 MRLDEA--SDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTL 470 E S + ++ HG + N+A+I E DL G+ V ++++ + D Sbjct: 415 KSWHEFTTSSKSLNIIHEDLIHG--LLIHNIAIITEEDLFGQEVVQQQRRHTKHKYFDVA 472 Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 I++L E+ IG +VH +GVGRY G+ T + ++L+L YAN+AKL VP+ S +LIS Sbjct: 473 IKSLVEIKIGDAIVHENYGVGRYLGLKTKIFDKQSQDFLVLKYANNAKLMVPIISFNLIS 532 Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 RYAG + ++ PLHKLG + W++A++KA E + D+A ELL I A+R+++ GF+F + Y Sbjct: 533 RYAGISLKSTPLHKLGTNQWAKAKKKAGEALFDIAVELLKISAKRSSQTGFSFPKPNDDY 592 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 F +FPFE TPDQ + +N VL+DM MDRLVCGDVGFGKTE+AMRAAFLAV K Sbjct: 593 SSFVANFPFEETPDQIKTMNEVLADMQSQQPMDRLVCGDVGFGKTEIAMRAAFLAVKAGK 652 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 QVA+LVPTTLL+ QHY +F DRF N P +I +SRF++ KEQ I+ ++ +G IDI+IGT Sbjct: 653 QVAILVPTTLLSNQHYRSFIDRFTNDPTKIATLSRFQTPKEQKIIIEQLKQGTIDIIIGT 712 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 HK++Q+++K+K+L L+I+DEEHRFGV+ KE +K +R DILT+TATPIPRTLNMA+ + Sbjct: 713 HKIIQNNIKYKNLSLIIIDEEHRFGVKQKEALKKLRGQSDILTMTATPIPRTLNMALGSL 772 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 R+LSIIATPPA+R ++TFV+E+ + ++EAI REI RGGQV+ L+ND+ +I AE L Sbjct: 773 RELSIIATPPAKRSTIQTFVQEWHNDNIKEAITREIHRGGQVFILHNDINSIDNMAENLK 832 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 +++P+ +I I HG++ RELE++M+DF+H RF++LVCTTIIETGIDIP ANTIII A + Sbjct: 833 QIIPKLQIRIAHGKIPTRELEQIMSDFYHARFHILVCTTIIETGIDIPNANTIIINNAQN 892 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 FGLAQLHQLRGRVGRSHH+AYA+L+ +++ A+ RL+ I SL +LG+GF LA HDL Sbjct: 893 FGLAQLHQLRGRVGRSHHRAYAYLIVKSHLSLSKTAKDRLDVIKSLTELGSGFMLANHDL 952 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS 1010 EIRGAG+LLG+ QSG + IGF+LY +LL+ +DA+ +G++ +L D + + +++ +PS Sbjct: 953 EIRGAGDLLGDNQSGQISEIGFNLYHDLLKRTIDAVYSGKKINLNDPINHEVQIDSGLPS 1012 Query: 1011 LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQA 1070 ++P+ +I DV+ RL YKRIA+ + NEL+ +++E+IDRFGLLPD + LL +L+ + Sbjct: 1013 IIPETYIFDVHERLVLYKRIANCQNNNELKALQIEMIDRFGLLPDSTKNLLYNTKLKLFS 1072 Query: 1071 QKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKT 1130 Q +G+ K+ E +I F +KN ++P + L+QKQ + Y+L +L + + + Sbjct: 1073 QIIGVNKIILYEDKAIITFNKKNTIDPIKITNLIQKQAKKYQLKDQNQLIIKEQMPKNIR 1132 Query: 1131 RIEWVRQFMRELE 1143 RI+ + ++ L Sbjct: 1133 RIKLIEYLLKMLN 1145 >UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Deltaproteobacteria RepID=Q39PS2_GEOMG Length = 1158 Score = 1171 bits (3030), Expect = 0.0, Method: Composition-based stats. Identities = 465/1154 (40%), Positives = 673/1154 (58%), Gaps = 30/1154 (2%) Query: 8 TLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM- 66 L K G + L L G+A A L+A++ + P+++IAPD A + E+ F+ + Sbjct: 15 HLAPKTG-RVTLTGLKGSAPAYLLAQLLKTAERPLLVIAPDADRAAEICTELRFFSGRPF 73 Query: 67 -VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHG 125 V++ W+ P++ SPH D+ RL+ L +L + ++ + L QRV P + L Sbjct: 74 DVLSFPAWDVAPFEKGSPHADVTGQRLACLRRLMDRKTAAVVTTPDALRQRVLPRTMLDN 133 Query: 126 HALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFF 185 +L G+ +RD +L + GY +V V + G +A RG ++D+FP G E P R++FF Sbjct: 134 ASLYFLPGEESNRDEFLAKLVTLGYLNVPLVEDRGTFAVRGGIVDIFPPGFEQPVRIEFF 193 Query: 186 DDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP---- 241 D ++++R FD SQR+L +E + LLP+ E ++ + + Sbjct: 194 GDFVETIRAFDPLSQRSLAPLEELLLLPSREMVLTDEVLKSASHHIKARCDELEISPVAR 253 Query: 242 EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT-LLVNTGDLETSAERFQADTL 300 + +Q+ +G P G+E+ PLF L LF Y ++++ L ERF + + Sbjct: 254 RELLEQLQQGLYPTGVEWLLPLFHPR-LETLFDYAGDAVRVVLDPEALAEEDERFDRELV 312 Query: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN---LGFQK 357 E++ + P +L E ++ V + + ++ L Q+ Sbjct: 313 T-AEDQARERGDLFASPAEFFLTASETAGSIEAGRLVTIPYLTVTGESDEKTALALDIQE 371 Query: 358 LPDLAVQAQQ--KAPLDALRKFLETF---DGPVVFSVESEGRREALGELLARIKIAPQRI 412 DL V + L L L + V+ + G+ + L ELL+ + Sbjct: 372 NTDLKVDVSSDSERILKPLVTRLNGWLEERQRVIVACHQRGQAQRLYELLSHYPLPLNIS 431 Query: 413 MRLDEAS----DRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPD 468 R A D ++IG GF L +I E ++ G R RR R Sbjct: 432 DRPFPAERERDDGKVDVVIGDLSRGFRLPEEKLIVIAEEEIFGRRQKRRGVSELRKK--- 488 Query: 469 TLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHL 528 ++ +LAEL G +VHL+HG+G Y G+ + G G++++L YA KLY+PV L+L Sbjct: 489 QIMTSLAELKPGDYMVHLDHGIGIYRGLQHISLSGCAGDFILLEYAGGDKLYLPVDRLNL 548 Query: 529 ISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDRE 588 + RY G + KLGG +W +A+ KA V+++A ELL IYA R EG AF + Sbjct: 549 VQRYVGAEGLEPRVDKLGGTSWEKAKGKARAAVQEMAGELLQIYAARQLHEGHAFSPPDD 608 Query: 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 Y+ F SF +E T DQ AI V+ DM MDRLVCGDVG+GKTEVAMR AF AV + Sbjct: 609 LYREFEASFAYEETSDQMSAIMDVIGDMTSAKPMDRLVCGDVGYGKTEVAMRGAFKAVMD 668 Query: 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 708 KQVAVLVPTT+LAQQH + F+ R +PV +EM+SRFR+ KEQ +IL +V +G ID++I Sbjct: 669 GKQVAVLVPTTVLAQQHLETFKARLGAYPVTVEMLSRFRTPKEQKEILEKVKKGAIDVII 728 Query: 709 GTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMS 768 GTH+LLQSDV FKDLGLLIVDEE RFGV HKE++K +A VDILTLTATPIPRTL M+M Sbjct: 729 GTHRLLQSDVTFKDLGLLIVDEEQRFGVTHKEKLKKYKAVVDILTLTATPIPRTLYMSMM 788 Query: 769 GMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAER 828 G+RDLSII TPP RLAVKTFV ++REA++RE+ RGGQ+++++N V++I AE Sbjct: 789 GIRDLSIIDTPPVDRLAVKTFVARSSDDLIREAVMRELRRGGQIFFVHNRVQSIMNWAEH 848 Query: 829 LAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 L +VPEA+IA+GHGQM E ELE+VM F H N+L+CTTIIE+G+DIP ANT+II+RA Sbjct: 849 LRRIVPEAKIAVGHGQMDEGELEKVMLGFMHGETNLLLCTTIIESGLDIPNANTLIIDRA 908 Query: 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATH 948 D FGLAQL+QLRGRVGRS +AYA+LL P A+++DA++RL+ I L +LGAGF LATH Sbjct: 909 DTFGLAQLYQLRGRVGRSKQRAYAYLLIPGEGAISSDARERLKIIQELTELGAGFRLATH 968 Query: 949 DLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRM 1008 DLEIRGAG++LG +QSG++ +GF LY ELLE A+ LK E L + E+ LR+ Sbjct: 969 DLEIRGAGDILGAKQSGNIAAVGFDLYTELLEEAIQNLKGE-----ERLERVEPEINLRI 1023 Query: 1009 PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQ 1068 P+ +P+D++ + N RL YK++ A++E E++E+ EL+DRFG LP A LL++ +LR Sbjct: 1024 PAFVPEDYVREPNQRLIIYKKLTQAESEEEVDEVMAELVDRFGKLPLAATYLLEVMKLRI 1083 Query: 1069 QAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSER 1128 ++ I E + + + F +K V P +IGL++ P+ Y+ RL + Sbjct: 1084 HFKRFLITMAEFDGRRLCLSFHQKTPVPPDTIIGLIRSNPKRYQFSPDFRLTAELADTSF 1143 Query: 1129 KTRIEWVRQFMREL 1142 + +E R ++ L Sbjct: 1144 EGVLEEARNLLKRL 1157 >UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Desulfuromonadales RepID=A1ALB0_PELPD Length = 1177 Score = 1168 bits (3021), Expect = 0.0, Method: Composition-based stats. Identities = 448/1156 (38%), Positives = 664/1156 (57%), Gaps = 35/1156 (3%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF--TDQMVMN 69 + LL L G++ A ++A+I R ++++ PD A E++ F ++ Sbjct: 22 RGSRHILLPGLKGSSPACILADILARSTRTLLVLTPDQAAADEFLRELTFFASPSHAPLS 81 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 W+ P+ + SPH DI +RL TL++L +++PV +QRV + Sbjct: 82 FPAWDMAPFSATSPHPDISGARLDTLFRLQNGLARAVVMPVAAALQRVLGRGLFSESSCY 141 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 + G+ RD L +L GY +V V + G +A RG +LD+FP P R++FF D Sbjct: 142 LVSGEEFERDELLGRLVKMGYANVPLVEDRGTFAVRGGILDIFPPNLSAPVRIEFFGDTA 201 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPE----HIY 245 +++R FD +QR+L +E + LLP+ E + + + + P I Sbjct: 202 ETIRTFDPLTQRSLHPLEELVLLPSREIILTDGVLADIAPRLKGCCDDLEIPANRRREIL 261 Query: 246 QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFEN 305 + + G+EY QPL L +F Y P +L + A L E Sbjct: 262 ENLKSAVYFRGVEYLQPLLHP-GLETIFDYAPDASLALLDPQAIQEAITTFGRELEDGEA 320 Query: 306 RGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHL--PTKAANANLGFQKLPDLAV 363 P P Q L+L ++L ++N R++L L P A + Q DL V Sbjct: 321 TARQNGLPHSPRQELYLDGEQLRELMENRGRLELSGLLLEEPQGPAVITIPCQDNTDLRV 380 Query: 364 QAQQKAPLD------ALRKFLETFDGPVVFSVESEGRREALGELLARIKIA--------- 408 ++ +LR++L++ V+ + + E L ELL +I Sbjct: 381 TVSKETTQALTPLSRSLRQWLDS-GFRVLIACHQNAQAERLRELLTPYRIPCAISEASFA 439 Query: 409 --PQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTIN 466 Q + D + D L+ G GF L LI E +L G+RV RR + Sbjct: 440 ETVQGEAQGDASPDGVVTLLQGDLSRGFRLLEARLVLIAEEELFGKRVRRRGIS---EVR 496 Query: 467 PDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSL 526 ++ +LAEL G +VH++HG+G Y G+ + G+ G++L+L Y KLY+PV L Sbjct: 497 KKQILSSLAELKPGDHMVHVDHGIGLYRGLQHISVSGVGGDFLLLEYNGGDKLYLPVDRL 556 Query: 527 HLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 L+ RY G + L KLGG +W +++ KA + + ++A ELL+IYA+R EGF+F Sbjct: 557 ALVQRYVGPEGSSPSLDKLGGVSWEKSKGKARKAIEELAGELLEIYAKRQICEGFSFSPP 616 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 E Y+ F SF +E TPDQ AIN VL+DM MDRLVCGDVG+GKTEVA+R AF A Sbjct: 617 DEMYREFEASFAWEETPDQLSAINDVLADMQHSRPMDRLVCGDVGYGKTEVALRGAFKAA 676 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 + KQV VLVPTT+LAQQH++ F +R +PVR+E +SRFR+ KEQ IL + +G+IDI Sbjct: 677 LDGKQVGVLVPTTILAQQHFETFHERLKEYPVRVEALSRFRTPKEQKAILERLKKGEIDI 736 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 +IGTH+LLQ DV FKDLGLLI+DEE RFGV+ KER+KA RA VD++TLTATPIPRTL M+ Sbjct: 737 VIGTHRLLQKDVAFKDLGLLIIDEEQRFGVKDKERLKAFRAVVDVMTLTATPIPRTLYMS 796 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 M G+RDLSII TPP RLAVKT V + +VREAI+RE+ RGGQV++++N V+ I K A Sbjct: 797 MMGIRDLSIIDTPPVDRLAVKTIVARFSEELVREAIMRELRRGGQVFFVHNRVQTIAKRA 856 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 E +A LVPEA+IA+GHGQM E+ELE+VM F H N+L+CTTIIE+G+DIP ANT+I++ Sbjct: 857 ELIAALVPEAKIAVGHGQMGEQELEKVMLGFMHGETNLLICTTIIESGLDIPNANTLIVD 916 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 AD FGL+QL+QLRGRVGRS + YA+LL P ++T+DA++RL+ + + +LGAGF +A Sbjct: 917 HADRFGLSQLYQLRGRVGRSSQRGYAYLLIPGEGSLTSDARERLKILQDISELGAGFRIA 976 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVEL 1006 THD+EIRGAG++LG QSG++ IGF LY ++LE + ++ E + + E+ L Sbjct: 977 THDMEIRGAGDMLGSRQSGTVIEIGFELYNQMLEETICRMRGE-----EMIEQVEPEINL 1031 Query: 1007 RMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARL 1066 ++P+ +P+ ++ D RL YK++ A++E ++ +++ E+ DRFG P L + +L Sbjct: 1032 KVPAFIPETYVRDTGQRLVIYKKLTQAESEEDVLDVQNEVSDRFGKYPLATAYLFETMKL 1091 Query: 1067 RQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLS 1126 R +KL +R+++ + K VI F + +P +I +++ +P+ YR RL + Sbjct: 1092 RIMLKKLLVRQIDYDGKDVVISFHPRTPASPDTIIAMMRNEPKRYRFTPDYRLTCGVKGT 1151 Query: 1127 ERKTRIEWVRQFMREL 1142 + I+ R + L Sbjct: 1152 AFEEIIDAARTALLRL 1167 >UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Francisella RepID=A0Q6R1_FRATN Length = 1141 Score = 1162 bits (3005), Expect = 0.0, Method: Composition-based stats. Identities = 482/1141 (42%), Positives = 724/1141 (63%), Gaps = 15/1141 (1%) Query: 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM----VM 68 + ++ G+A + L E +++ +++ D Q A +++ E+ ++ Sbjct: 7 SANDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNNSKVDIL 66 Query: 69 NLADWETLPYDSFSPHQDIISSRLSTLYQLPT-MQRGVLIVPVNTLMQRVCPHSFLHGHA 127 + E LPYD FS DIIS R LY++ Q ++I ++ ++++ P SF+ H+ Sbjct: 67 FFPNLEILPYDRFSASIDIISRRQEILYKMTHQPQNTLIITSISNTLRKIAPASFIQEHS 126 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 ++K G L + L AGY V+ V E GE++ RG+++D++P+GS++ +R+D FD+ Sbjct: 127 FILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPIGSKVAFRIDLFDN 186 Query: 188 EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 247 EIDS++ + +SQR+ ++++IN++P+HE + + K I Sbjct: 187 EIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFALDKLNKLCGDKALNSTIATY 246 Query: 248 VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRG 307 + +GIE++ PLF+ + L L+ Y P +T + ++ S E F + R+ Sbjct: 247 IQNNEYFSGIEFYLPLFY-DKLSSLYDYLPPSTNIHLVDNITNSIEAFSDEVKFRYNELK 305 Query: 308 VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQ 367 D RP+LP Q ++ E+ + + ++ + K+ + L L ++ + Sbjct: 306 HDSDRPILPFQEIFYSQQEIQDIYQQYKNIKWFQQP---KSKSKILKVDHLEKISANYKL 362 Query: 368 KAPLDALRKFLETFD-GPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR--Y 424 P L++F++ + V+FS +S GR E L E L ++ + Q +EA + Sbjct: 363 ANPFKDLQQFIDKSNFDKVIFSTDSNGRAELLLEHLNKLNLNIQSCKNFNEAIEASTKFC 422 Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 L+I + G + + +ALI E+DL E + S+ +P +++L +L G VV Sbjct: 423 LIISPFQEGMII-DKKIALITEADLFPEHSYNSTKVSQHDHHPTVDLKDLTDLKPGMHVV 481 Query: 485 HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544 H++HG+GRY G+ ++E G E+++L YANDAK+YVP++SL+LIS Y E L+K Sbjct: 482 HIDHGIGRYEGLESIELNGKKDEFILLRYANDAKIYVPITSLNLISIYNSSLTEKIALNK 541 Query: 545 LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604 LG D W + ++K +K+ DVAA LL+IYA+R ++GF+ D E+Y FC FP+E TPD Sbjct: 542 LGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETPD 601 Query: 605 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 664 Q AIN V DM MDRL+CGDVGFGKTE+AMRAAFLA N KQVA+LVPTT+LAQQ Sbjct: 602 QLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQ 661 Query: 665 HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 724 HY++F+DRF N V IE+I+R ++ K Q Q+ ++ +G +DI+IGTHKL+ S + FK+LG Sbjct: 662 HYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNLG 721 Query: 725 LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784 LLI+DEEHRFGV KE++K+++A +DILT++ATPIPR+L+MA S +RDLSIIA+PPA+RL Sbjct: 722 LLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRL 781 Query: 785 AVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 844 +VKTFV+EYD+ ++REA+ RE +RGGQ++YLYN VE IQK E L EL P RIAI HGQ Sbjct: 782 SVKTFVKEYDNNIIREAVSRETIRGGQIFYLYNKVETIQKKKEILQELFPRLRIAIAHGQ 841 Query: 845 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 M E+E+++VM DF H ++++L+CTTIIETGIDIP ANT+IIE A++ GLAQLHQLRGRVG Sbjct: 842 MSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVG 901 Query: 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 964 RSHHQAYA++L P+ ++T DA KRLEAI++ E LG GF LA HDLEIRGAGE+LGEEQS Sbjct: 902 RSHHQAYAYMLIPNEASITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQS 961 Query: 965 GSMETIGFSLYMELLENAVDALKAGREPSLEDLT-SQQTEVELRMPSLLPDDFIPDVNTR 1023 G+++ IG +LYM+LL+ + L+AG+E ++E++ S EVEL +P+L+PD +I DVNTR Sbjct: 962 GNIDGIGLNLYMDLLDKTIANLRAGKELNIEEVINSTVCEVELNIPTLIPDYYIYDVNTR 1021 Query: 1024 LSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 L+ YKRI+ A + +L IK+ELIDRFG LP LL +A ++ A LGI +++ Sbjct: 1022 LNIYKRISKA-SHQDLVNIKIELIDRFGKLPLEVLYLLKVAHIKIDAIALGISQIKMFAT 1080 Query: 1084 GGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELE 1143 G I F+ LI L+Q Q +RL L + + RIE++ F++++ Sbjct: 1081 SGKISFSNNTKFELQKLIKLIQSQHSDFRLTKEHDLIITKVTKTAEQRIEFIENFLKKIV 1140 Query: 1144 E 1144 + Sbjct: 1141 Q 1141 >UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bacteria RepID=A0L867_MAGSM Length = 1198 Score = 1161 bits (3004), Expect = 0.0, Method: Composition-based stats. Identities = 499/1191 (41%), Positives = 709/1191 (59%), Gaps = 71/1191 (5%) Query: 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM---VMN 69 +L ELT A + L E+A PVVL+ +Q A + E+ F Q ++ Sbjct: 17 RKSPLILPELTTGASSWLAVELALTQPAPVVLVTGKVQRAESIARELLFFGAQRGVHILP 76 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQL--------------PTMQRGVLIVPVNTLMQ 115 WETLP++ SP+ ++ RL+TL +L R V+I +MQ Sbjct: 77 FPAWETLPFEPLSPYGPLVGDRLATLSRLIGLGKSGPISIGNELGDSRTVVITTPAAIMQ 136 Query: 116 RVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175 R+ P + L + G +L+ R L +GY V QV E GEYA RG L+DLFP G Sbjct: 137 RLMPKAVLARYGFAFSVGDQLNLPQFRELLTRSGYNPVSQVSEPGEYAARGGLIDLFPPG 196 Query: 176 SELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF 235 + P R++ F DE++S+R+FD +QR+L+ + A+ +LP E + I FR+ +R+ F Sbjct: 197 RDEPVRVELFGDEVESIRLFDPSNQRSLDPIPAVEVLPVREVILNADTISCFRTAYREVF 256 Query: 236 EVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERF 295 + IY+++S+ G+E + PLF+ + L LF Y P TL + D+ E Sbjct: 257 GGYAAEDLIYKEISQNRTYQGMEQYLPLFYPD-LDTLFDYLPKQTLFLMEPDVPNQIEER 315 Query: 296 QADTLARF----------ENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLP 345 + + E + +L+L EL LK +P++ P Sbjct: 316 AREIEDQHRIAYQAGQGNEKGYDGSSMRCIARNTLYLDQRELTERLKPYPQLLQSATGKP 375 Query: 346 TKAANANLGFQKLPDLAVQAQ------------QKAPLDALRKFLETFDG---PVVFSVE 390 +L +P + Q +D L + + + + F Sbjct: 376 A----LDLDLHPIPPIQEGVQGADHSQQDEKKATATVMDRLCRQISLWQKEQRRIGFVSR 431 Query: 391 SEGRREALGELLARIKIAP---QRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICES 447 + G+RE + ELL K++ L +A R L++G GF R++ LI E Sbjct: 432 TIGQRERMRELLTDHKVSVVDGSSWSALLQADPRQPMLLLGDVSDGFEHPTRHVVLISED 491 Query: 448 DLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGE 507 ++ G R+ + D LI + A+L+ G VVH++HGVGR+ G+ +LE G + + Sbjct: 492 NVFGVRIR---RRQISRRYLDQLIASFADLNEGDAVVHVDHGVGRFGGLVSLEVGQLKND 548 Query: 508 YLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAE 567 +L++ YA+ KLYVPV +L + +++ G E L KLGG W++ R KA +K+ ++A E Sbjct: 549 FLLIIYADGDKLYVPVENLDRVGKHSSGEE--VQLDKLGGKRWAKTRAKARKKILEMAEE 606 Query: 568 LLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 L+ I AQR A +G + YQ F +FPFE T DQA+AI AVL DM P AMDRLVC Sbjct: 607 LVAIQAQREATQGVVYSGPDALYQEFASTFPFEETVDQAKAIEAVLEDMASPKAMDRLVC 666 Query: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 GDVGFGKTEVA+RA F A + KQVA+LVPTT+LAQQHY+NF R A +P++++++SRFR Sbjct: 667 GDVGFGKTEVALRATFRAAMDGKQVAILVPTTILAQQHYENFAKRLAGYPIKVDILSRFR 726 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 + KEQ + V G ID+++GTH+LLQ+DVKFKDLGLL+VDEE RFGV HKERIK +RA Sbjct: 727 TPKEQKATIEAVGHGTIDVIVGTHRLLQTDVKFKDLGLLVVDEEQRFGVSHKERIKNLRA 786 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL 807 +DILTLTATPIPRTLNMAM+G+RD+SIIA+PPA RLA++T + YD VREAILRE+ Sbjct: 787 TLDILTLTATPIPRTLNMAMAGVRDISIIASPPADRLAIRTIITHYDKQQVREAILRELY 846 Query: 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 RGGQV+Y++N V++I++ A+ +AELVPEAR+ + HGQMRE +LE+VM +F+ Q FN+LVC Sbjct: 847 RGGQVFYVHNQVQDIERKAQEIAELVPEARVGVAHGQMRENQLEKVMMEFYRQTFNILVC 906 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 TTI+E G+DIPTANTIII+RAD FGLAQLHQLRGRVGRS H+AYA++L PH + +T A+ Sbjct: 907 TTIVENGVDIPTANTIIIDRADKFGLAQLHQLRGRVGRSKHRAYAYMLVPHLRRLTKHAE 966 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK 987 KRLEA+ SL +LGAGF LATHDLEIRGAG +LG+EQSG ++ +GF LY ++L AV AL+ Sbjct: 967 KRLEALESLGELGAGFMLATHDLEIRGAGNILGDEQSGQIKEVGFELYNQMLREAVVALQ 1026 Query: 988 AGR--------------EPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASA 1033 R P E + L + + +P++++ DV+ RL+ YKRIA Sbjct: 1027 TARAQGRDLASTTPLGQAPVDEGPAPVVPSINLHLSTYIPEEYVEDVHQRLTLYKRIAEL 1086 Query: 1034 KTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKN 1093 KT EL+E+++EL DRFG LP LL + +++ KL I KL+ KGG +F E Sbjct: 1087 KTYEELQEMRLELADRFGPLPATVDHLLSVMEIKRLCVKLRIIKLDAGPKGGTFQFDELF 1146 Query: 1094 HVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD--LSERKTRIEWVRQFMREL 1142 V LI ++Q++ H RLD +R +++ SE K R++ VR+ + L Sbjct: 1147 TVEIPRLIAMVQREVGHARLDQTSRTLILRNRPWSEDKQRLQEVREALTTL 1197 >UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3P0_NATTJ Length = 1196 Score = 1160 bits (3002), Expect = 0.0, Method: Composition-based stats. Identities = 385/1176 (32%), Positives = 653/1176 (55%), Gaps = 41/1176 (3%) Query: 7 YTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-Q 65 ++ K ++++ ++G+ ++A + + P+ LI D A L+ ++ D + Sbjct: 21 FSPRRKRSTKQMVSGISGSEFPLILAGLFRAYGRPITLITYDNYRAESLYSDLVTLLDKE 80 Query: 66 MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHG 125 V + + P++ +D+ + R L + + + V I + + +++ P + Sbjct: 81 QVYIYPEHQVYPFELAWQSRDVNNERAQVLQAMLSKKSAVYIFSLKSAKEKLSPAQVVKQ 140 Query: 126 HALVMKKG-QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDF 184 L ++ G ++LS + +L GY + V + G+++ RG ++D+FP+ SELP R++F Sbjct: 141 TFLNLEVGNEKLSPTMIAEKLTGLGYENTSMVEQKGQFSHRGGIIDVFPVASELPVRIEF 200 Query: 185 FDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT-DKAAIELFRSQWRDTFEVKR---- 239 FDDEI+S+R FD+ +QR+L+E ++ + P + D + +Q FE+++ Sbjct: 201 FDDEIESIRAFDLATQRSLKEYNSLVVGPGSQLVIGDNTNLSQALNQLTREFELQKGKLM 260 Query: 240 ------DPEHIYQQVSK--GTLPAGIE-----YWQPLFFSEPLPPLFSYFPANTLL-VNT 285 E + +++++ +L GI + F+ + + + P N+L V+ Sbjct: 261 KDGITDRSEELEERINRDLSSLENGISLPHFHRYLSYFYPKNYGTIIDFLPTNSLFWVDE 320 Query: 286 GDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKN---WPRVQLKTE 342 + ++ F + + ++ + L +L+ ++++ S + L+ Sbjct: 321 PNRIKESDEFYNNEITELAESLIEEGKILPGESNLFYSIEDVLSGNPFDTIYSANFLRQN 380 Query: 343 HLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELL 402 + N+ + + Q L +++++ + ++ + L E L Sbjct: 381 PFENVSQATNMSVKSMNQF--YGQWDFFLKEMKQWMNN-NYRIILFSPTPESARTLYENL 437 Query: 403 ARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR 462 + +I + + + ++ + +G + GF+ LA+I DL G + + R R Sbjct: 438 KKEEIGATIVEKGNTKTENQVVIAVGDLKSGFILQESKLAVITYGDLWGHQKKKIRSRKR 497 Query: 463 -RTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYV 521 ++ + + + EL + VVH +HG+G+Y G+ TLE GG+ +YL + YA + LYV Sbjct: 498 DKSEDKAVKVSDYRELQVEDYVVHEKHGIGKYMGIKTLEVGGLYKDYLHIKYAGNDSLYV 557 Query: 522 PVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGF 581 P + I +Y G + L+ LG W + +Q+ V+++A +LL +YA+R++++G+ Sbjct: 558 PTEQIDEIQKYVGKEGKPPKLYSLGSSEWQKVKQRVKSSVKELAEDLLKLYAERSSRKGY 617 Query: 582 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 641 AF D + F D FP+E TPDQ +AI+ + D+ MDRL+CGDVG+GKTEVAMRA Sbjct: 618 AFSQDTPWQKEFEDYFPYELTPDQKKAISEIKEDLESEQPMDRLLCGDVGYGKTEVAMRA 677 Query: 642 AFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE 701 AF AV KQV VLVPTT+LAQQH+ F++RFA +PV I +ISRF S K++ + E+ E Sbjct: 678 AFKAVMEGKQVCVLVPTTILAQQHFQTFKERFAPYPVDIRVISRFSSQKDEKLVKEEMKE 737 Query: 702 GKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPR 761 G +I+IGTHKLL VKF+DLGLLI+DEE RFGV+HKE+IK ++ N+D+LT+TATPIPR Sbjct: 738 GNAEIIIGTHKLLNKSVKFRDLGLLIIDEEQRFGVQHKEKIKMLKKNLDVLTMTATPIPR 797 Query: 762 TLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVEN 821 TL+M++ G+RDLS+I TPP R V+T+V E+ ++REA+ REI R GQVY ++N V+ Sbjct: 798 TLHMSLVGVRDLSVIETPPEGRFPVQTYVMEHSPQLIREAVNREISREGQVYVVHNRVKG 857 Query: 822 IQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 I K A+ +A+ VP+A++ + HGQM E++LERVM DF+ +++VLV T+I+E G+DI N Sbjct: 858 INKVAKEVADWVPDAKVGVAHGQMPEKQLERVMLDFYEGKYDVLVSTSIVEAGLDIQNVN 917 Query: 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGA 941 TIII AD GL+Q +QLRGRVGRS+ AYA+L K +T +A+KRL+AI +LG+ Sbjct: 918 TIIIYNADRMGLSQPYQLRGRVGRSNRMAYAYLTYQKDKVLTQEAEKRLKAIKEFTELGS 977 Query: 942 GFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAG----------RE 991 GF LA DLEIRGAG +LG EQ G + +GF +Y ++L++A+ + ++ Sbjct: 978 GFKLALRDLEIRGAGNILGPEQHGHIMAVGFDMYTKMLKDAIKEISQESQTQEETTKIQD 1037 Query: 992 PSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFG 1051 E ++ +VEL + + LP +I D +++ YK+ S + +E +++ EL DRFG Sbjct: 1038 DKTEVEKPEEVKVELNINAYLPTTYISDHEQKITIYKKARSINSYSEANDLETELKDRFG 1097 Query: 1052 LLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHY 1111 LP + LLDI RL+ A++ GI + ++ + ++ LI L K P Sbjct: 1098 SLPQEVKNLLDITRLKVLARETGIISITRQGYWVHLDLDPRQKISGENLIKLTTKFPGKI 1157 Query: 1112 RLDGP-TRLKFIQDLSERKTR--IEWVRQFMRELEE 1144 + L ++ K ++ + + L E Sbjct: 1158 TVSSQTDGLTLKVNVKNLKDSGLMDMINKVAESLLE 1193 >UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMB9_MOOTA Length = 1183 Score = 1153 bits (2982), Expect = 0.0, Method: Composition-based stats. Identities = 423/1157 (36%), Positives = 650/1157 (56%), Gaps = 34/1157 (2%) Query: 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF-TDQMVMNLA 71 AGE +L G L +A + + P++++ P + A RL +I F + + L Sbjct: 27 AGEVQLYG-LPEGMKGLWLAAMLDEFN-PILVVTPGSEEAQRLAADIESFWPGEGIDYLP 84 Query: 72 DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 E LP + ++P ++ + RL L L + + +L+VPV L++++ P L ++ Sbjct: 85 PSELLPLEVYTPSPELAAQRLKVLTNLVSGRTRILVVPVEDLLRKLPPPDTLRHSLQSLE 144 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 GQ + R+AL +L GYR + V G+ A RG ++D+FP+G+E P RL+ F DEIDS Sbjct: 145 VGQIIDREALLQKLTGLGYRREEVVEAPGQLAVRGGIIDIFPLGAEEPVRLELFGDEIDS 204 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDK---AAIELFRSQWRDTF------------E 236 LR FD SQR++ ++ AI + PA E +E ++++ T+ E Sbjct: 205 LRRFDPVSQRSVADLRAIVVGPAQEVLPPPDLGPGLETLKAEFSQTYATLRQRQPQAARE 264 Query: 237 VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAER 294 +K + + + G+ P G QP F+ LF YF LLV + L R Sbjct: 265 LKDRVQELIAMLEAGSWPGGSSQLQPFFYPRQ-ATLFEYFQRQPLLVLDDPARLLEEMRR 323 Query: 295 FQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLK--TEHLPTKAANAN 352 + L F + + L +L +L + + R+ +P Sbjct: 324 REQQRLGIFTDMLAAGL-ALPSQGQAYLDSADLERLWQRYQRLYFSLLPRRVPGSNPRPA 382 Query: 353 LGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRI 412 +G A Q + ++ L ++ ++ V R AL + LA I Sbjct: 383 VGISAQTIPAFQGKLGLVVEELTRWRRE-GYRIILMVADPNRVVALRQALAEQGIEALTH 441 Query: 413 MRLDEASDRGRYLMI-GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLI 471 + RG +M+ G GF LA+I ++++ G RR +T + I Sbjct: 442 PEARDTLGRGEVIMVSGRLRQGFTWPEMRLAIIGDTEIYG---PIRRPRRVKTPREGSKI 498 Query: 472 RNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISR 531 + +L G VVH+ HG+GRY G+ L+ GG+ +YL++ YA +LYVPV + L+ + Sbjct: 499 SSFTDLKEGDYVVHVHHGIGRYLGLQQLDVGGVKKDYLLIQYAGKDRLYVPVDQVSLVQK 558 Query: 532 YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 591 Y GG L++LGG+ W++ + + E V+++A ELLD+YA+R A G AF D + Sbjct: 559 YVGGEGHVPRLYRLGGNEWNKVKSRVQEAVQEMAQELLDLYARREAIPGHAFGPDTPWQR 618 Query: 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ 651 F ++FP+ TPDQ +AI V +DM +P MDRL+CGDVG+GKTEVAMRAAF AV + Q Sbjct: 619 EFEEAFPYTETPDQLRAIAEVKADMEKPRPMDRLLCGDVGYGKTEVAMRAAFKAVMDGMQ 678 Query: 652 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 711 VAVLVPTT+LAQQHY+ F+ RFA +PV+I ++SRF S +EQ ++ + G++DI+IGTH Sbjct: 679 VAVLVPTTILAQQHYETFKARFAPFPVKIAVLSRFCSPREQKVVVEALKRGEVDIVIGTH 738 Query: 712 KLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR 771 +LL SDV FK+LGL+I+DEE RFGV HKE++K +R +VD+LT+TATPIPRTL+M+++G+R Sbjct: 739 RLLSSDVNFKNLGLVIIDEEQRFGVAHKEKLKQLRYSVDVLTMTATPIPRTLHMSLAGVR 798 Query: 772 DLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 831 D+S+I TPP R V+T+V EY+ +VREAI RE+ RGGQV+ ++N V++I + A + + Sbjct: 799 DMSMIETPPEDRFPVQTYVVEYNPELVREAIRRELDRGGQVFIVHNRVQDIDRFAYHIQQ 858 Query: 832 LVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 LVPEAR+ IGHGQM E ELE VM DF R++VLV TTI+E G+DI ANT+I++ +D+F Sbjct: 859 LVPEARVGIGHGQMGEEELENVMLDFISGRYDVLVSTTIVENGLDIQNANTLIVDESDNF 918 Query: 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLE 951 GLAQL+QLRGRVGR++ AYA+ K + A+KRL AI G+G+ +A DL+ Sbjct: 919 GLAQLYQLRGRVGRTNRLAYAYFTYRPDKVLGEIAEKRLAAIREFTAFGSGYKIALRDLQ 978 Query: 952 IRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTE---VELRM 1008 IRGAG LG EQ G M +GF LY +LLE AV LK R + + + +EL + Sbjct: 979 IRGAGNFLGPEQHGHMVAVGFDLYCQLLEEAVRKLKEQRGEGVPRPALAEPQATPIELSV 1038 Query: 1009 PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQ 1068 + L D++IP+ ++ Y R+ +A +E+I E+ DR+G P AR LL + R+R Sbjct: 1039 DTFLGDNYIPEATLKMELYHRLMNAGDLAAVEDIAAEMEDRYGPPPPEARNLLALTRVRI 1098 Query: 1069 QAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLS-- 1126 A+++G+ + + + F + + L+ L Q P+ L + Sbjct: 1099 LAREVGVISVNQKNREVELSFGQHTGLRGEKLLQLNQYFPRKLAFSSAGGLTIRVRVMGL 1158 Query: 1127 ERKTRIEWVRQFMRELE 1143 ++ ++ + + + ++ Sbjct: 1159 SQEELLDLLEKVLTRIK 1175 >UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE5_DESAA Length = 1179 Score = 1152 bits (2981), Expect = 0.0, Method: Composition-based stats. Identities = 398/1174 (33%), Positives = 633/1174 (53%), Gaps = 42/1174 (3%) Query: 4 QYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT 63 QY G LG L ++ A +A++ V+++AP + A L ++ F Sbjct: 14 QYLALTRESQGPVECLG-LERSSQAYFIAQLFREKKRTVLVLAPTKKEAKTLCADLDFFL 72 Query: 64 DQM------------VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPT-MQRGVLIVPV 110 + ++ + LP+ S H + ++R+S L ++ +++ Sbjct: 73 QDLKQPESALPGQGWILEFPAYHILPFKGISYHTETAANRISALSRMANSPDPAIVVTTP 132 Query: 111 NTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLD 170 + R+ P S L+ ++ G+ L RDA +L S GY V E G++ RG+++D Sbjct: 133 QAMASRLIPKSALNSFGELIMAGEELDRDAFVEKLVSGGYVKNLIVEEPGDFCVRGSIVD 192 Query: 171 LFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQ 230 ++ P R++FF DE+DS+R F +QRT++++E +LPA E K ++ + Sbjct: 193 VYGPPYSQPLRIEFFGDEVDSIRFFSPSTQRTIKKMEEAVILPATEAVVSKDRLQSVIHR 252 Query: 231 WRDTFEVKRDP----EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL--LVN 284 R+ + P + + GIE + PL + LF Y PA+TL +++ Sbjct: 253 VREKAVLADMPVTKIREVVDSLKATQQFPGIEGFVPLLYENGGDSLFDYLPADTLCTVLD 312 Query: 285 TGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKT--- 341 E++ D FE + R +PP L ++ L + T Sbjct: 313 PVAASQEYEKYLEDVEENFETAQAE-NRLSIPPAMTHLPAEDFRKRLNRARPLTFPTLAV 371 Query: 342 ---EHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETF-------DGPVVFSVES 391 + A L + +L + D L K L + +V + S Sbjct: 372 TGPQEEEAGKARMQLHVETNTELVQNLKASKERDQLLKPLADWVNDKRDQGYSIVMACGS 431 Query: 392 EGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLG 451 + + E L LL + R +++G+ GFV +LA++ E+++ G Sbjct: 432 KMQAERLESLLTPYGVGLSRNQNWMTRPSARCQVVLGSLSSGFVWPAESLAVVTETEIFG 491 Query: 452 ERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLML 511 + RR+ +++R P T + +LA+L G VVH++HG+ +Y G+ ++ GG+ ++L+L Sbjct: 492 PKHRRRKIETQR---PRTELLDLAQLSQGDFVVHVDHGIAQYGGLVKMDLGGVANDFLLL 548 Query: 512 TYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDI 571 Y + KLY+PV +LI +Y E L KLGG AW + + + + V +A ELL + Sbjct: 549 EYRDGDKLYLPVDKSNLIQKYRTMGETAPALEKLGGKAWEKVKSRVKKSVEKIAGELLKL 608 Query: 572 YAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVG 631 YA R K+G+AF + F +F +E TPDQA+AIN VL+DM MDRL+CGDVG Sbjct: 609 YAVRKVKQGYAFSPTDSYFAEFEANFEYEETPDQAKAINDVLADMENRRPMDRLICGDVG 668 Query: 632 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKE 691 +GKTEVA+RA+F AV + KQ A + PTT+L++QHY F R+ +PV+I ++RFR A E Sbjct: 669 YGKTEVALRASFKAVSDSKQTAFVTPTTILSEQHYRTFLKRYEGYPVKIACLNRFRKAAE 728 Query: 692 QTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDI 751 + +IL + G IDI+IGTH +LQ V+FKDL L+I+DEE RFGV+HKE +K +RA VD+ Sbjct: 729 KKEILKGLENGDIDIVIGTHSVLQKSVQFKDLRLVIIDEEQRFGVKHKETLKKIRATVDV 788 Query: 752 LTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQ 811 L LTATPIPRTL+M+M G+RD+++I TPP +R + T+V ++D ++ EAI E+ R GQ Sbjct: 789 LALTATPIPRTLHMSMVGIRDITVINTPPEQRRPITTYVSKFDEVIAAEAIRAELARKGQ 848 Query: 812 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTII 871 V++++N V++I A RL LVPEAR+ + HGQM E LE+VM F + ++LVCT II Sbjct: 849 VFFVHNRVQSIDAMAGRLKRLVPEARVGVAHGQMSETMLEKVMIKFVNHEIDLLVCTAII 908 Query: 872 ETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLE 931 E+G+DIP ANTI+I RAD FGLAQ++QLRGRVGR QAYA+L P +T DAQ+RL+ Sbjct: 909 ESGLDIPAANTILINRADMFGLAQIYQLRGRVGRGDDQAYAYLFIPDESVLTRDAQRRLK 968 Query: 932 AIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGRE 991 + DLGAGFA+A DL+IRG G +LG QSG + +G+ +Y++L+E A+ LK Sbjct: 969 VLMEHSDLGAGFAIAMSDLQIRGGGTILGSAQSGQIAAVGYEMYLQLMETAIGQLKGEGS 1028 Query: 992 PSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFG 1051 E+ + + +P+ +IPDV+ RL Y+R++ + +++ E+ DRFG Sbjct: 1029 A-----PPLDPEINVDFSAFIPEWYIPDVDQRLLAYRRLSRMEKVSDVGAFSKEMQDRFG 1083 Query: 1052 LLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHY 1111 +P L + + G++K++ K + + ++ N L+ ++++ + Sbjct: 1084 KVPQETNQLFFKIMFKILCRDAGVKKMDMAGKNLHLVISPEHQRNRDELLYMIKENFPRF 1143 Query: 1112 RLDGPTRLKFIQDLSERKTRIEWVRQFMRELEEN 1145 RL+ LK D K R V+ ++E+ Sbjct: 1144 RLNTEGVLKVALDTEAVKGRAVAVKNVLKEIAGR 1177 >UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clostridia RepID=A3DIQ2_CLOTH Length = 1178 Score = 1152 bits (2980), Expect = 0.0, Method: Composition-based stats. Identities = 378/1156 (32%), Positives = 613/1156 (53%), Gaps = 34/1156 (2%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL 70 +K G + + + + + + IA + A ++ +++S F + + Sbjct: 28 IKRGIPTTVTGPSESQKVHIACALCGHLGLKGIYIAYNEMQARKMFEDVSFFFGKDAVFF 87 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVM 130 E + +D + D I R++ LY++ G ++ L Q++ + + Sbjct: 88 PSKEIMLHDVEAKSYDSIYERINALYRIVNDDYGFIVTSAEALCQKLIDRKLFKESIVNV 147 Query: 131 KKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEID 190 G R+ +L S GY V V ++A RG ++D+FP+ ++ R++ FDDE+D Sbjct: 148 ALGDRIDLGLFTQKLVSIGYERVTTVEGKSQFAVRGGIVDIFPVNADTAVRIELFDDEVD 207 Query: 191 SLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEH------- 243 S+R FD +QR++E +EA+ +LPA E + + + +++ Sbjct: 208 SVRSFDTMTQRSVENLEAVTILPARELIYPPGLRDSIMEKILNDLKIQIKKMEGKNNKSG 267 Query: 244 ----------IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAE 293 ++ S+ AG++ + P +P + Y + +LV + + + Sbjct: 268 IQKLEAKINSDIERFSQEYYFAGMDRYIPYIIEKP-SAVIDYI-DSEILVFVDEPKRFEQ 325 Query: 294 RFQADTLARFE--NRGVDPMRPLLPPQSLWLRVDELFSELKNWPR-VQLKTEHLPTKAAN 350 R + E ++ + L ++ + L+ ++K + T Sbjct: 326 RIENLITESNEMCKSFMENGQLLAGSFDIFFDCNYLWDKVKKCKNTLYFTTLPSDDGQEE 385 Query: 351 ANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQ 410 + Q + + + + + VV ++ R E L E L I Sbjct: 386 KRENIVSKLLNSYQGHLEILEEDISHW-KKNRARVVILSGTKSRGEMLAETLRTKDIEAV 444 Query: 411 RIMRLDEASDRG-RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDT 469 + G + G GF ++ +L G+ RR S + Sbjct: 445 YLEEPHRDIQPGEVVITHGVLNRGFEYPGIGFVVVSGKELFGQEKKTRRHKSAKGKK--- 501 Query: 470 LIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLI 529 I +L++G VVH HG+G+Y G+ L + +YL + Y++ LYVP + L LI Sbjct: 502 -ISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKKDYLKIQYSDGDYLYVPTNQLDLI 560 Query: 530 SRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQ 589 +Y G + L KLGG W++ R + E ++++A EL+++YAQR EG AF D Sbjct: 561 QKYIGSEGKTPKLSKLGGTDWAKTRARTKESLKELAQELINLYAQREMAEGHAFGKDTVW 620 Query: 590 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH 649 + F D FP++ T DQ + I + DM P MDRL+CGDVG+GKTEVAMRA F AV + Sbjct: 621 QKQFEDLFPYQETEDQLRCIEEIKRDMESPRPMDRLLCGDVGYGKTEVAMRAVFKAVMDG 680 Query: 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIG 709 KQVA LVPTT+LAQQHY+ F++R ++P+ +E++SRFR+ EQ +IL +V G +D+LIG Sbjct: 681 KQVAYLVPTTVLAQQHYNTFKERMKDFPITVEVLSRFRTQAEQKRILKDVKAGMVDVLIG 740 Query: 710 THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSG 769 TH+LLQ DV FKDLGLL++DEE RFGV HKE+IK M+ N+D+LTLTATPIPRTL+M++ G Sbjct: 741 THRLLQKDVCFKDLGLLVIDEEQRFGVTHKEKIKRMKTNIDVLTLTATPIPRTLHMSLVG 800 Query: 770 MRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 +RD+S I PP R V+T+V EY+ VVR+AI RE+ RGGQV+YLYN V I + A + Sbjct: 801 IRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRVRAINQKAAEI 860 Query: 830 AELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 +LVPEAR+AI HGQM E ELE +M F + +++LVCTTIIE+G+D+P NTII+E AD Sbjct: 861 QKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPNVNTIIVEDAD 920 Query: 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHD 949 GLAQL+QLRGRVGRS+ AYA++ K ++ A+KRL+AI + G+GF +A D Sbjct: 921 KMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEFGSGFKIAMRD 980 Query: 950 LEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMP 1009 L++RGAG LLG +Q G ++++G+ +Y +LL AV+ L+ ++ +++ + Sbjct: 981 LQLRGAGNLLGPQQHGHIDSVGYDMYCKLLAEAVNELRG----IPVTKEDEEISIDVNVS 1036 Query: 1010 SLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQ 1069 + + +D+I D N ++ YK+IAS E ++ + + EL+DR+G +P P + LL IA ++ Sbjct: 1037 AYIDNDYIGDENQKIDMYKKIASINDEQDVIDAEDELMDRYGEIPQPVKNLLQIAYIKSL 1096 Query: 1070 AQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERK 1129 A+ G ++ + +++E ++N L L+ K + R Sbjct: 1097 AKACGFSSVQEKNDTVIFQYSESKNINFEVLGKLMDKYRRKLLFTASNRPYIT--FKTTG 1154 Query: 1130 TRIEWVRQFMRELEEN 1145 + E + + ++ L ++ Sbjct: 1155 VKGEELLEIIKILLQD 1170 >UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=Bacilli RepID=MFD_BACSU Length = 1177 Score = 1150 bits (2975), Expect = 0.0, Method: Composition-based stats. Identities = 392/1149 (34%), Positives = 636/1149 (55%), Gaps = 28/1149 (2%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADW 73 +++LL L+G+A + + +A P+ LI ++ A ++ D+++ + V+ Sbjct: 26 KEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSLLEDRSVLLYPVN 85 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKG 133 E + + ++ + RL + +L + +++ PV + + + P ++++ G Sbjct: 86 ELISSEIAVASPELRAQRLDVINRLTNGEAPIVVAPVAAIRRMLPPVEVWKSSQMLIQVG 145 Query: 134 QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193 + D L ++L GY D V GE++ RG ++D++P+ SE P R++ FD E+DS+R Sbjct: 146 HDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGIIDIYPLTSENPVRIELFDTEVDSIR 205 Query: 194 VFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK--------------R 239 F+ D QR++E + +IN+ PA E + Sbjct: 206 SFNSDDQRSIETLTSINIGPAKELIIRPEEKARAMEKIDSGLAASLKKLKADKQKEILHA 265 Query: 240 DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV-NTGDLETSAERFQAD 298 + H +++S+G + + F+ +P L Y P NTLL+ + E Sbjct: 266 NISHDKERLSEGQTDQELVKYLSYFYEKP-ASLLDYTPDNTLLILDEVSRIHEMEEQLQK 324 Query: 299 TLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKL 358 A F ++ + L + + + + + L H+ + + Sbjct: 325 EEAEFITNLLEEGKILHDIRLSFSFQKIVAEQKRPLLYYSLFLRHVHHTSPQNIVNVSGR 384 Query: 359 PDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEA 418 + Q + +F ++ + VVF ++ R + L +LA I Sbjct: 385 QMQSFHGQMNVLAGEMERFKKS-NFTVVFLGANKERTQKLSSVLADYDIEAAMTDSKKAL 443 Query: 419 SDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELH 478 Y+M G + GF + LA+I E +L RV ++ + ++ + I++ +EL Sbjct: 444 VQGQVYIMEGELQSGFELPLMKLAVITEEELFKNRVKKKPR--KQKLTNAERIKSYSELQ 501 Query: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEE 538 IG VVH+ HG+G+Y G+ TLE GI +YL + Y KLYVPV + + +Y G + Sbjct: 502 IGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQGSDKLYVPVEQIDQVQKYVGSEGK 561 Query: 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFP 598 L+KLGG W R ++K V+D+A +L+ +YA+R A +G+AF D E + F +FP Sbjct: 562 EPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPDHEMQREFESAFP 621 Query: 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 658 ++ T DQ ++I+ + DM + MDRL+CGDVG+GKTEVA+RAAF A+ + KQVA+LVPT Sbjct: 622 YQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGDGKQVALLVPT 681 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 T+LAQQHY+ ++RF ++P+ I ++SRFR+ KE + + + G +DI+IGTH+LL DV Sbjct: 682 TILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDIVIGTHRLLSKDV 741 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 +KDLGLLI+DEE RFGV HKE+IK ++ANVD+LTLTATPIPRTL+M+M G+RDLS+I T Sbjct: 742 VYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMSMLGVRDLSVIET 801 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 PP R V+T+V EY+ +VREAI RE+ RGGQVY+LYN VE+I++ A+ ++ LVP+A++ Sbjct: 802 PPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKADEISMLVPDAKV 861 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 A HG+M E ELE VM F +VLV TTIIETG+DIP NT+I+ AD GL+QL+Q Sbjct: 862 AYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFDADKMGLSQLYQ 921 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 LRGRVGRS+ AYA+ K +T A+KRL+AI +LG+GF +A DL IRGAG L Sbjct: 922 LRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLTIRGAGNL 981 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIP 1018 LG +Q G ++++GF LY ++L+ A++ K + + +TE+++ + + +P+ +I Sbjct: 982 LGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKTEQ----FETEIDVELDAYIPETYIQ 1037 Query: 1019 DVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 D ++ YKR S T E E++ E+IDRFG P L +A ++ A++ + + Sbjct: 1038 DGKQKIDMYKRFRSVATIEEKNELQDEMIDRFGNYPKEVEYLFTVAEMKVYARQERVELI 1097 Query: 1079 EGNEKGGVIEFAEKNH--VNPAWLIGLLQKQPQHYRLDGP-TRLKFIQDLSERKTRIEWV 1135 + ++ + +E+ ++ L L + + L +LK ++ EW+ Sbjct: 1098 KQDKDAVRLTISEEASAEIDGQKLFELGNQYGRQIGLGMEGKKLKISIQTK-GRSADEWL 1156 Query: 1136 RQFMRELEE 1144 + L+ Sbjct: 1157 DTVLGMLKG 1165 >UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIY9_9FIRM Length = 1177 Score = 1147 bits (2968), Expect = 0.0, Method: Composition-based stats. Identities = 402/1157 (34%), Positives = 639/1157 (55%), Gaps = 40/1157 (3%) Query: 17 RLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDE-ISQFTDQMVMNLADWET 75 +L+ L +A L+A + PV+++ PD +A R++++ +S F D+ V E Sbjct: 29 QLVYGLDESARTMLMAALRLHTDRPVLIVTPDQTHAGRIYEDMLSVFKDEDVYLFPGKEL 88 Query: 76 LPYDS-FSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 L Y + FS D + R++ + +L V++ V+ ++ ++ P + ++ Sbjct: 89 LYYSNLFSESGDAAAQRIAAMKRLARGDNIVVVATVSAMVTKMPPFAPWQEACFTLRPDD 148 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 194 + D L +L GY V+ V G+ + RG ++D++P G PYR++FF + +DS+R Sbjct: 149 DIPIDELLGKLVDGGYERVEMVDVQGQVSVRGGIVDIYPAGEPYPYRIEFFGETVDSIRR 208 Query: 195 FDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQW-----------------RDTFEV 237 FD +SQR+ E V+ + L PA E A + S ++ Sbjct: 209 FDPESQRSRERVDLLELTPARELVVTAAERKNALSALAKEDAKLSEQLAKGVRTEAEGKL 268 Query: 238 KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERF 295 + +++ + G+E + L+F + + YFP NTLL E +AE+ Sbjct: 269 QERLAEHMEKIREEVYFPGMEQYL-LYFYDQAAKITDYFPDNTLLFIDEPQRCENTAEQL 327 Query: 296 QAD---TLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN 352 + + +G P R S + L ++L + ++H P + + Sbjct: 328 VREIGEMQSTLFAQGDLPARSADMVWSYKSLLANLLTQLVAFSLFAHSSDHHPYRRS--- 384 Query: 353 LGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRI 412 + P Q + + ++ VV S R + E+LA I Sbjct: 385 VSLSAKPVPKFLGQWDLFGEEVGQWRRQ-GYRVVILTSSRQRSTGIVEVLAEKNIPAHYT 443 Query: 413 MRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIR 472 + + + R L+ G+ E GFV L L+ E D+L ++ R + Sbjct: 444 LSEPDLAQRSVTLLHGSLESGFVLPEIKLVLLTEQDILPQKKK----KRRIKGKEGVRVG 499 Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 + EL +G VVH +HG+G+Y G+ TL+ GG +YL + Y+ + KLY+P+ + ++ +Y Sbjct: 500 DYQELQVGDFVVHEQHGIGQYLGLRTLDVGGTQRDYLYIQYSGNDKLYIPIEQIDVVRKY 559 Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 G + + LGG WSR + + V+++A ELL +YA R + G AF D + Sbjct: 560 IGVEGKKPKMSALGGGEWSRVKARVQASVQELAKELLALYAARETEPGHAFSPDHSWQKD 619 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F +FP+E TPDQ QAI V DM + DRL+CGDVG+GKTEVA+R AF AV + KQ Sbjct: 620 FEAAFPYEETPDQLQAIAEVKQDMEKSTVTDRLLCGDVGYGKTEVALRGAFKAVMDDKQA 679 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 A LVPTT+LAQQHY NF +R +PV + ++SRF+S EQ + + + EG ID+++GTH+ Sbjct: 680 AFLVPTTVLAQQHYHNFVERLEGFPVNVGILSRFQSPAEQKETIKGLKEGTIDLVVGTHR 739 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 +L D++F+DLG L+VDEE RFGVRHKERIK ++ N+D+LT+TATPIPRTL+M++ G+RD Sbjct: 740 ILSKDIRFRDLGFLVVDEEQRFGVRHKERIKMLKKNLDVLTMTATPIPRTLHMSLVGVRD 799 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 832 +S+I TPP R ++T+V EY ++REA++RE+ RGGQVY+++N V++I + A +L EL Sbjct: 800 MSVIETPPEDRYPIQTYVLEYSDALIREAVMRELNRGGQVYFVHNRVQSINRWAAKLQEL 859 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 +PE R+A+ HGQM E LE+VM F ++VL+ TTI+E G+DIP NTIII+ AD FG Sbjct: 860 MPEVRLAVAHGQMPEDRLEKVMMGFLEGEYDVLLSTTIVEAGLDIPNVNTIIIQDADKFG 919 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 LAQL+QLRGRVGRS+ AYA+L K +T A+KRL+AI +LG+GF +A DLEI Sbjct: 920 LAQLYQLRGRVGRSNRIAYAYLTYQKDKVLTEVAEKRLQAIKEFTELGSGFKIAMRDLEI 979 Query: 953 RGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLL 1012 RGAG +LG EQ G M +GF LY++LLE+A+ K E+ T Q+ +E++ + L Sbjct: 980 RGAGNILGPEQHGFMMAVGFDLYVKLLEDAIRTYKGQ-----EEDTRQEPRIEIQADAYL 1034 Query: 1013 PDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 P +I D ++ FY+++A+ ++ ++ E K EL DR+G LP A LL++A ++ A++ Sbjct: 1035 PASYISDARQKIVFYQKVAAVESVEQVLEAKEELCDRYGPLPAAAENLLNVAHVKLLARE 1094 Query: 1073 LGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTR--LKFIQDLSERKT 1130 L + + + I F + ++ L+ L ++ + L F + Sbjct: 1095 LYVSSVSEEKGEIQIRFTKDFTLSGDLLLKLSKQFKGRLTAGTGKQFILAFRLNTRSAGE 1154 Query: 1131 RIEWVRQFMRELEENAI 1147 R+ ++ + EL++ AI Sbjct: 1155 RLLFILELFDELKKLAI 1171 >UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 Length = 1173 Score = 1140 bits (2950), Expect = 0.0, Method: Composition-based stats. Identities = 381/1145 (33%), Positives = 633/1145 (55%), Gaps = 38/1145 (3%) Query: 21 ELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDS 80 L+ ++ + L+ + + P ++I A +L++++ + Q V E + Y+ Sbjct: 34 GLSESSRSYLIYAVYNQQDKPFLIITHSDVEARKLYEDLCFYLPQ-VYYFPTKEVVFYNI 92 Query: 81 FSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDA 140 + D+ RL + ++ + ++I V +L P + + G ++ Sbjct: 93 DAISGDLRWERLKVIREMLNPGKKIIITCVESLASVYVPVELYKNYIFKISVGDKVDFKN 152 Query: 141 LRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ 200 + +L GY ++ V G+++ RG ++D++ S+ PYR++ F DE++S+R F+++SQ Sbjct: 153 ISEKLIQCGYERMEMVERRGQFSIRGGIMDIYSPISQEPYRVELFGDEVESIRNFNLESQ 212 Query: 201 RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF-----------------EVKRDPEH 243 R++E++ I + A E D+ IE+ +S+ ++ ++K Sbjct: 213 RSIEKMNNIEIFAAKEIIFDRERIEIGKSKIKEDLASIIEKLKENKNNEGMEKIKTITNK 272 Query: 244 IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARF 303 + + + I+ + P F+ E Y A V D++ + + + Sbjct: 273 NLETLQETWTFESIDSFLPYFY-EHTSSFLDY--AKNYFVIVDDIKRCSGKLDSVYFEFL 329 Query: 304 ENRGVDPMRPLLPPQS--LWLRVDELFSELKNWPRVQLKTEHLPTK--AANANLGFQKLP 359 EN R + P + L EL E + + L TK + F ++ Sbjct: 330 ENYKNFLERGNVLPGQSKMLLDRSELIDEFNHREIIILDAIAKSTKILPPKLIVNFTQIT 389 Query: 360 DLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEAS 419 Q + + ++ + K ++ ++ + R E L + L I ++E Sbjct: 390 LNNYQGKLELLIEEI-KHKKSKSFKILILSGTRARGERLVDTLRDNGIESSYRDVVNEIK 448 Query: 420 DRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHI 479 + G GF +++I + ++ G+ A+R+ + + I++ EL Sbjct: 449 PGEVVITFGNQLKGFEYPEIKISVISDKEVFGK--AKRKNIRKTNKKGTSKIKSFTELKP 506 Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G +VH+ HG+G Y G+ LE G +YL L Y + KLYVPV L ++ +Y G +N Sbjct: 507 GDFIVHVNHGIGVYKGIKQLELQGHKKDYLELVYECEDKLYVPVEQLDMVQKYIGSEGKN 566 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599 ++KLG WS+ ++KA + + ++A +L+ +YA R+ +G+ + D + F D FP+ Sbjct: 567 PKINKLGSSEWSKVKKKAKKSIEEMAEDLIKLYAIRSTLKGYKYSKDTIWQKQFEDEFPY 626 Query: 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 659 E TPDQ I + DM MDRL+CGDVG+GKTEVA+RAAF AV + KQVA LVPTT Sbjct: 627 EETPDQLSTIQDIKMDMESDKVMDRLLCGDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTT 686 Query: 660 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVK 719 +LAQQHY+NF RF+++PV+I+MISRF++A +Q + V G +D+LIGTH++LQ DV+ Sbjct: 687 ILAQQHYNNFIQRFSDFPVKIDMISRFKTAAQQKATIKAVKIGDVDVLIGTHRILQKDVQ 746 Query: 720 FKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 FKDLGLLI+DEE RFGV HKE+IK +R NVD+LTL+ATPIPRTL+M++ G+RD+S+I TP Sbjct: 747 FKDLGLLIIDEEQRFGVSHKEKIKQIRKNVDVLTLSATPIPRTLHMSLVGVRDISVIETP 806 Query: 780 PARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 839 P R ++T+V EY+ ++R+A+LRE+ RGGQVY++YN VENI++ A +A+L+PE ++A Sbjct: 807 PDERYPIQTYVVEYNDQLIRDAVLRELSRGGQVYFVYNRVENIKEMASYIAKLIPEGKVA 866 Query: 840 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899 + HGQM+ERELE ++ DF ++++LV TTIIETG+DI NT++I AD GL+QL+QL Sbjct: 867 VAHGQMQERELEGIIMDFMQNKYDILVSTTIIETGMDIQNVNTMVIYDADKMGLSQLYQL 926 Query: 900 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959 RGRVGR++ AY +L K + A+KRL+ I +LG+GF +A DLEIRGAG ++ Sbjct: 927 RGRVGRTNRIAYCYLSYRKDKVLKEVAEKRLKVIKEFTELGSGFKIALKDLEIRGAGNMM 986 Query: 960 GEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPD 1019 G Q G M +G+ LY +LE+++ +K D +T VEL++ + +PD++I + Sbjct: 987 GSSQHGHMAAVGYDLYCRMLEDSIKLIKGE-----IDKEPVETTVELKVDAYIPDNYIEN 1041 Query: 1020 VNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLE 1079 ++ YK+IA+ + ++ +IK EL DRF +P L+DIA +R ++LGI ++ Sbjct: 1042 EVQKIEVYKKIAAISSYEDMLDIKEELEDRFYDIPPSVYNLMDIAYIRSIGKELGIESIK 1101 Query: 1080 GNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFM 1139 ++ V F ++ V+ L L++ L +L F L + K + Sbjct: 1102 ESKNEVVFTFQNEDRVDKNVLKALVKTYFGKIVLKMNKKLSFGYTLKDVKR-----ENLL 1156 Query: 1140 RELEE 1144 ++E Sbjct: 1157 SNVKE 1161 >UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T2A9_9ZZZZ Length = 1150 Score = 1138 bits (2944), Expect = 0.0, Method: Composition-based stats. Identities = 440/1134 (38%), Positives = 692/1134 (61%), Gaps = 10/1134 (0%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF--TDQMVMNLADWETL 76 G+L G++ +AE + ++IAP++ +A L +EI+ F T + L D E L Sbjct: 22 YGQLYGSSINLALAERIKNDLDFKIVIAPEINSAEILCNEINYFSETGLSIELLPDLEIL 81 Query: 77 PYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 PYD SP +I+SR L+QL VL++ ++L+ ++ P + + + G+ Sbjct: 82 PYDVSSPSNQVIASRSEILFQLLKGNIDVLVLNASSLLWKLPPRKYFEKESFTLSVGELF 141 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 S + +L GY V V++ GE+ RG+L+DLF P R+DF D++ID +++FD Sbjct: 142 SMQQIGEKLRINGYERVSTVIKPGEFCIRGSLIDLFSPLYTNPIRIDFDDEKIDLIKLFD 201 Query: 197 VDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAG 256 VDSQ TL + ++ ++P+ +P A + F++ R+ F+ + +Y + G Sbjct: 202 VDSQLTLNTINSVTIIPSEHYPKSSLAFDFFKTNMRNAFDGNQLEWPLYNFIETYAESHG 261 Query: 257 IEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLP 316 + + PLFF E + ++ Y T L GD++T + +Q RF N + +P L Sbjct: 262 VYNYLPLFF-ESMSSIWDYCKPGTELFCVGDIKTPIKDYQKLINQRF-NSQDNLSQPNLK 319 Query: 317 PQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDAL-R 375 P L+ E +++ + L+ + + ++ F P + A + + +D + Sbjct: 320 PSELFFSATEQINKINEMHPINLQHQKCWKSHDHNSINFDTRPLEPLTAFKTSSMDKIIH 379 Query: 376 KFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR--GRYLMIGAAEHG 433 LET ++ S S+ R + L IA +R+ +E +R G ++ + Sbjct: 380 GLLETSTNKILLSAGSKNRIAFIENQLREFSIASRRVSNWNEFLERRAGVFVTEKSISES 439 Query: 434 FVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRY 493 F+ +A+I E +L G R + R+ S +P+++I++L +L +G VVH EHG+G+Y Sbjct: 440 FITAKSGIAVIGEIELFGRRSSTRKYRSPAGKDPESIIQDLKDLQVGSLVVHGEHGIGKY 499 Query: 494 AGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRA 553 G++ + + E+L + YA L+VPV+ + +SR+ G + + + L LG + W + Sbjct: 500 KGLSVMMVDNVNSEFLTIEYALGDLLHVPVTLMDQVSRFIGQSSDESILSHLGSNQWKKL 559 Query: 554 RQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVL 613 +K ++ DVAAELL+IYA RA G + +++ Y+ FCD F + T DQA+ I VL Sbjct: 560 CKKTKKQAYDVAAELLEIYANRAIAVGKSHVANQKDYENFCDGFEYVLTQDQAKVIEDVL 619 Query: 614 SDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRF 673 DM +MDRLVCGDVGFGKTEVA+RAAF N QVA+LVPTT+LAQQH++ F +RF Sbjct: 620 DDMAASKSMDRLVCGDVGFGKTEVALRAAFTCAINGYQVALLVPTTILAQQHFETFNERF 679 Query: 674 ANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHR 733 + WP+ I ++SR +++K Q+ A + +GK DI+IGTH LL V +K+LGL+IVDEEHR Sbjct: 680 SEWPIAINILSRLQTSKNNNQVRAGIEKGKADIIIGTHALLSDKVVYKNLGLVIVDEEHR 739 Query: 734 FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREY 793 FGVRHKE++KA+R +VD L LTATPIPRTLNMA+ ++D+S+IATPP R+ VKT++ ++ Sbjct: 740 FGVRHKEKLKALRKDVDYLALTATPIPRTLNMAIGELKDISMIATPPEGRIPVKTYISQW 799 Query: 794 DSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERV 853 D ++ EA REI RGGQV +++N +++I+ AE + +++P + I HG+M+ER LERV Sbjct: 800 DKSLIHEACQREISRGGQVLFVHNRIDDIENMAETIRQIIPVGSLEIAHGRMKERSLERV 859 Query: 854 MNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 913 M F++ F++L+ T+IIE+G+DIP ANTIII RAD FGLAQLHQLRGRVGRS Q+YA+ Sbjct: 860 MMKFYNNEFDILLATSIIESGLDIPNANTIIINRADRFGLAQLHQLRGRVGRSERQSYAY 919 Query: 914 LLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFS 973 L+ P +T + ++RLEAI ++EDLG GF LATHDLEIRGAGE+LG+EQSG ++ IGFS Sbjct: 920 LMIPSKHTLTNEGRQRLEAIEAIEDLGVGFILATHDLEIRGAGEILGDEQSGQIQKIGFS 979 Query: 974 LYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASA 1033 LY ++L A+D+L+ G + ++S ++ L +P+L+P++++PDVN RL+ YKRI+S Sbjct: 980 LYKDMLAQAIDSLRDGPQMQSTTISS---DINLNIPALIPENYMPDVNLRLTMYKRISST 1036 Query: 1034 KTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKN 1093 K++ E++ I+ ELIDRFG LP+ LL +A L+ QA LGI+K+ + + G F + Sbjct: 1037 KSKIEIKHIESELIDRFGELPEQTTNLLLMAHLKNQANTLGIKKIRMDRRYGRFYFDQST 1096 Query: 1094 HVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAI 1147 + +I L++++P +++ L F D RI V + L +++ Sbjct: 1097 TIEAQNIIDLIEREPDVFKMYPDQSLGFKGDFPLVLDRINQVNTILGYLVGDSV 1150 >UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W311_DESAS Length = 1197 Score = 1136 bits (2939), Expect = 0.0, Method: Composition-based stats. Identities = 414/1179 (35%), Positives = 642/1179 (54%), Gaps = 61/1179 (5%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNL 70 K +++ L+ A + ++A + + ++I Q A L +++ VM Sbjct: 31 KNRRCQVVSGLSSAQKSFVIAGLVQAMRQTALIITASDQEAAGLTEDLKNLLPDLKVMTF 90 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVM 130 LPY F+ ++I+ R+ L L + V+I PV LM+R+ P + L + Sbjct: 91 PARRLLPYQVFAYSKEILRQRMEVLESLCRGENPVIIAPVEALMRRLGPCADFCSARLEL 150 Query: 131 KKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEID 190 GQR + + L GY V+ V HG+++ RG +LD++P+ P R++FFDDE+D Sbjct: 151 NVGQRYELPQMVSCLHEHGYERVNLVESHGQFSVRGGILDIYPITGINPVRVEFFDDEVD 210 Query: 191 SLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP--------- 241 S+R+F+ +QR+ E + + + P E + E ++ +R Sbjct: 211 SIRIFNPGTQRSEENMSQMQIFPVREMVVRQGDWERAYQALSQEYQYRRRNLDKKSDSEV 270 Query: 242 -------EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSA 292 E + +S+ IE + P F+ E + L +Y A +L++ L+ + Sbjct: 271 LDNLSRCEEVLDNISQAKYFDSIEQYLPYFYDEDI-TLLNYIKAESLVLVDEPSRLQENT 329 Query: 293 ERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN 352 + Q + + + R L + + ++ + + LP +A+ Sbjct: 330 DLLQRERTETYSE-LMKAGRVLPGQFKGYTDWAGIHKQITGFRAIYFS--FLPRQASLWR 386 Query: 353 LGFQKLPDLAVQAQQKAPLDALRKFLETFD---GPVVFSVESEGRREALGELLARIKIAP 409 + ++ L + + + VV V++ R L L + Sbjct: 387 SCNTVNFPVKTMQNFMGKVEMLAEEIRHYKMSRYGVVLLVKNSDRAAQLVLSLRDYDLEA 446 Query: 410 QRIMR------------------LDEASDRGR---YLMIGAAEHGFVDTVRNLALICESD 448 + + DRGR ++ +GF LA+I E++ Sbjct: 447 LYLKKDLSEYPHLNVQEDMPDSKTKYKVDRGRGQIVILPMHLSNGFELVSGKLAVITETE 506 Query: 449 LLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY 508 + G R Q R + AEL G VVH+ HG+GRY G+ L G + +Y Sbjct: 507 IYGHRKKPSVQRQR----VQDKMELFAELKTGDYVVHVNHGIGRYDGVVQLTIGDVKRDY 562 Query: 509 LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAEL 568 L++ YA + KLY+P + +I +Y G L +LGG WSR + K E V+++A EL Sbjct: 563 LLVKYAGEDKLYIPTDQVEMIQKYLGSEGGTPKLSRLGGAEWSRVKSKVKEAVKEMAQEL 622 Query: 569 LDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCG 628 L +YA R A +G F D Q F +FP+E TPDQ +AI V +DM +P MDRL+CG Sbjct: 623 LALYAAREAVQGHPFSKDTVWQQEFEAAFPYEETPDQLKAIEEVKADMERPRPMDRLLCG 682 Query: 629 DVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRS 688 DVG+GKTEVA+RAAF AV + KQVAVLVPTT+LAQQH++ F++RFA +PV I M+SRF + Sbjct: 683 DVGYGKTEVALRAAFKAVMDGKQVAVLVPTTILAQQHFNTFKERFAKYPVNIAMLSRFIT 742 Query: 689 AKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRAN 748 A+ Q QI+ E+ G++DI+IGTH+L+Q D+KFKDLGL++VDEE RFGV HKE++K +R N Sbjct: 743 ARRQRQIVQELLLGQVDIVIGTHRLVQDDIKFKDLGLVVVDEEQRFGVTHKEKLKQLRQN 802 Query: 749 VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILR 808 VD+LTLTATPIPRTL+M++ G+RD S++ TPP R+ V+T+V E + ++VREAI RE+ R Sbjct: 803 VDVLTLTATPIPRTLHMSIVGVRDTSLLETPPEDRIPVQTYVLEEEPVIVREAIRRELGR 862 Query: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868 GGQVYY++N V ++ + A L LVP+A IAIGHGQM+E LE VM DF +++F++L+CT Sbjct: 863 GGQVYYVHNRVADLDRVAGWLKGLVPDAAIAIGHGQMKEDRLENVMLDFMNKKFDILLCT 922 Query: 869 TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQK 928 TIIETG+DI NT+I++ AD+ GLAQL+QLRGRVGR++ AYA+ K M+ A+K Sbjct: 923 TIIETGLDIQNVNTLIVKDADYMGLAQLYQLRGRVGRTNRLAYAYCTFRGDKVMSELAEK 982 Query: 929 RLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKA 988 RL A+ + G+G+ +A DLEIRGAG +LG EQ G + +GF LY LLE AV K Sbjct: 983 RLSAVREFTEFGSGYKIAMRDLEIRGAGNILGPEQHGHIAAVGFDLYCRLLEEAVLEAKG 1042 Query: 989 GREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELID 1048 G E+ +T VEL + + +PD+++ D+N ++ YKR+A+ + L E++ ELID Sbjct: 1043 G-----ENAKPIETLVELPVTAYIPDEYVIDLNQKVELYKRMANIRDIKMLSEMEDELID 1097 Query: 1049 RFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQP 1108 RFG +P+P LL + R++ A L I+ + ++FA + + LI + +K Sbjct: 1098 RFGDIPEPVLNLLAVTRIKALAVNLKIKNISRINGYYRLQFAASHDLTGEKLITVSEKYG 1157 Query: 1109 QHYRL---DGPTRLKFIQDLSERKTRI--EWVRQFMREL 1142 + +G ++ +++TR+ + + L Sbjct: 1158 GKVKFNHAEGEFEIRLQTVSKDQETRLTMSRLESLLMNL 1196 >UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Veillonellaceae RepID=A1HRU9_9FIRM Length = 1109 Score = 1136 bits (2938), Expect = 0.0, Method: Composition-based stats. Identities = 402/1140 (35%), Positives = 611/1140 (53%), Gaps = 72/1140 (6%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMN 69 A + L+ LTG + L+A + +I ++ +L +++ V+ Sbjct: 22 TAANKASLIYGLTGTQKSVLLAAAYHKKPRATFIITVSGESLSQLKSDLATLLPAAPVLE 81 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 L + + + + ++ + RL +L + +++ +MQ+ P L + Sbjct: 82 LPALDFVTFSVTAKSLELTAQRLDIYSRLLGGEPVIVLATAEAIMQKAPPKEELVNSRVS 141 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 + G + + L L GY VDQV G+++ RG ++D+FP+ P RL+ F DEI Sbjct: 142 LAAGGIVQLEKLLATLVRFGYERVDQVDNVGQFSARGGIIDIFPLNRPYPLRLELFGDEI 201 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVS 249 DSLR FD +QR++ ++ ++ P + R+ Sbjct: 202 DSLREFDPATQRSIGALDKADI-----MPIIEPEHSGKRT-------------------- 236 Query: 250 KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVD 309 + SY PA+ +V D AR Sbjct: 237 ---------------------TVLSYLPADGCVVF-------------DEPARVREAMAK 262 Query: 310 PMRPLLPPQSLWLRVDELFSELKNWPRVQLKT--EHLPTKAANANLGFQKLPDLAVQAQQ 367 ++ + ++ + + + V L + P Q Sbjct: 263 LIKENPEIKRRVYTWPDIAAAAQAFNVVYLSLLLQKTPYTEPGEIHSITAKGIAPFHRQM 322 Query: 368 KAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMI 427 + +D L+ +L+ PV+F + + L L + ++ +L + + Sbjct: 323 EMLVDELKAWLDRKLQPVIFMT-NRDKAVHLQHNLTQEGVSAVFSEQLTTLVPGTVMITV 381 Query: 428 GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLE 487 G GF LA++ E D+ G + R + + I +L +G VVH+ Sbjct: 382 GVLAGGFELPHAKLAVLTEKDIFGRQKKGIRPRAAK----GQQITYFRDLKVGDYVVHVN 437 Query: 488 HGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGG 547 HG+G+YAG+ TLE GG+ +Y ++ YA + K+YVP +HL+ +Y G E LH++GG Sbjct: 438 HGIGKYAGVETLEVGGVHRDYFLIRYAGEDKIYVPTDQVHLLQKYIGAEGEVPRLHRMGG 497 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607 W +A +A V D+A EL+ +YA R GFAF+ D + F ++FP+E TPDQ Q Sbjct: 498 TEWQKATSRAKAAVADLAKELIALYAARQVTPGFAFEPDTPWQKEFEEAFPYEETPDQLQ 557 Query: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667 AI+ + DM P MDRL+CGDVGFGKTEVA+RAAF AV + KQVAVLVPTT+LAQQHY Sbjct: 558 AISEIKRDMEAPRPMDRLLCGDVGFGKTEVAIRAAFKAVMSGKQVAVLVPTTVLAQQHYQ 617 Query: 668 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727 F RFA + +++ISRFRS KEQ LA+V G++D+LIGTH+LL DV+FKDLGLLI Sbjct: 618 TFSSRFAGFGPVVDVISRFRSPKEQKATLAKVRAGQVDVLIGTHRLLNPDVQFKDLGLLI 677 Query: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787 VDEE RFGV KE++K R N+D+LTL+ATPIPRTL+M++ G RD+SII TPP R V+ Sbjct: 678 VDEEQRFGVAQKEKLKKWRTNIDVLTLSATPIPRTLHMSLVGARDMSIIETPPEERYPVQ 737 Query: 788 TFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 847 T+V EY VVR+AI RE+ RGGQVY++YN V+ I K RL+E++P+ARI + HGQM E Sbjct: 738 TYVVEYHEEVVRDAIRRELRRGGQVYFVYNRVQTIDKMHSRLSEILPDARIGVAHGQMSE 797 Query: 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 LERVM DF+ +++LVCT+IIE+G+D+P ANTII+ AD FGLAQL+Q+RGRVGR+H Sbjct: 798 DRLERVMLDFYEGNYDILVCTSIIESGLDVPNANTIIVYDADKFGLAQLYQMRGRVGRTH 857 Query: 908 HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSM 967 AYA+ K +T A+KRL+AI +LGAGF +A DLEIRGAG +LG +Q G + Sbjct: 858 RMAYAYFTYQRDKVLTEVAEKRLQAIKEFAELGAGFKIAMRDLEIRGAGNILGPQQHGHI 917 Query: 968 ETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFY 1027 ++GF +Y LL+ AV L+ G+ + +E + + L D+I D ++ Y Sbjct: 918 LSVGFEMYCRLLDEAVQELRTGKVVQ----PPPEPVLEFNVDAYLSGDYISDAMHKIEVY 973 Query: 1028 KRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVI 1087 +RIA+ +TE + E+ ELIDRFG P P + L +AR++ A+ LGIR + I Sbjct: 974 QRIAAIRTEEHISELVDELIDRFGEPPQPVQNLFMVARIKNYARVLGIRSIFQRRDHVEI 1033 Query: 1088 EFAEKNHVNPAWLIGLLQKQPQHYRLDG-PTRLKFIQDLSERKTRIEWVRQFMRELEENA 1146 +F ++ ++ ++ L P + P + ++ ++ + ++W+ + +R L E+A Sbjct: 1034 QFTDRPNIGLDDIMALKSTYPGRVSIQPGPPQTLRLKTVNLTEPVLDWLVKVLRPLSESA 1093 >UniRef50_B6ISZ9 Transcription-repair coupling factor n=96 Tax=Alphaproteobacteria RepID=B6ISZ9_RHOCS Length = 1209 Score = 1131 bits (2927), Expect = 0.0, Method: Composition-based stats. Identities = 442/1129 (39%), Positives = 640/1129 (56%), Gaps = 31/1129 (2%) Query: 45 IAPDMQNALRLHDEISQF-TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM-- 101 +A D A RL + +S F V+ W+ LPYD SP+ DI++ R+ L +L Sbjct: 45 VATDDARAARLAEAVSFFDPGIEVILFPAWDCLPYDRVSPNGDIVARRIDALTRLLEPAA 104 Query: 102 --QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEH 159 + +L+ VN + +V P + + G R++ L+ L + GY V E Sbjct: 105 KDRALLLVTTVNAALHKVPPRLAFRNASFRARVGDRINLPELQRFLANNGYTKAQTVREP 164 Query: 160 GEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT 219 GE+A RG ++DLFP G+ P RLD F D++D +R FD +Q T E+ + L P E Sbjct: 165 GEFAVRGGIVDLFPPGTAEPLRLDLFGDDLDGVRAFDPMTQLTTEKRDGFVLKPMSEVFL 224 Query: 220 DKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN 279 D+ +I FR+ +R+ F + +Y+ VS G AG+E+W PLF S L LF Y P Sbjct: 225 DEMSISRFRTGYRELFGAVTGDDPLYEAVSAGRKYAGMEHWLPLFHS-GLETLFDYMPDA 283 Query: 280 TLLVNTGDLETSAERFQA--------DTLARFENRGVDPMRPLLPPQSLWLRVDELFSEL 331 + ++ E +R + TL E + +P+ +PP L + L Sbjct: 284 PVTLDPHVEEARDQRLEQVRDFFEARRTLQEAEKKSGNPVYRPVPPGMTVLDAEGWDLHL 343 Query: 332 KNWPRVQLKTEHLPTKAANANL---GFQKLPDLAVQAQQKAP--LDALRKFLETF---DG 383 P QL +N +L G +K D A Q D LR+ + Sbjct: 344 AVRPVAQLTPFAAAEAGSNPDLTDAGGRKGRDFADARVQSGVNVYDVLREHVGALLADGR 403 Query: 384 PVVFSVESEGRREALGELLARIKI----APQRIMRLDEASDRGRYLMIGAAEHGFVDTVR 439 VV + S G R+ L +L I A + ++ L++ A +HGF Sbjct: 404 RVVVAGYSTGARDRLRSVLKEHGIERVKAVESWAEVEGLPRTTTALVVLALDHGFTAP-- 461 Query: 440 NLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTL 499 LA+I E D+LG+R+ R +R I + L+ G VVH++HG+GRY G+ TL Sbjct: 462 GLAVITEQDILGDRLVRAGGRKKR--RAANFIAEASGLNPGDLVVHIDHGIGRYDGLETL 519 Query: 500 EAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAE 559 + GG + L L Y KLYVPV ++ ++SRY G + L +LGG W + + + Sbjct: 520 DVGGAPHDCLRLVYEGGDKLYVPVENIEVLSRY-GSEDSAGQLDRLGGAGWQSRKARVKK 578 Query: 560 KVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQP 619 +++D+AA LL I A+RA + + FC FP+ T DQ AI VL D+ Sbjct: 579 RLKDMAAALLRIAAERALRTAPPVAVPDGAWDEFCARFPYAETDDQLHAIEDVLGDLSSG 638 Query: 620 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 MDRLVCGDVGFGKTEVA+RAAFLAV N QVAV+VPTTLLA+QHY F RFA PVR Sbjct: 639 RPMDRLVCGDVGFGKTEVALRAAFLAVMNGMQVAVVVPTTLLARQHYRTFEQRFAGLPVR 698 Query: 680 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK 739 + +SR +AKE Q A +A+G +DI++GTH LL V FK LG++IVDEE FGV+ K Sbjct: 699 LGQLSRLATAKETAQTKAGLADGTVDIVVGTHALLSKSVDFKRLGMVIVDEEQHFGVKQK 758 Query: 740 ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVR 799 ER+K +RA++ +LTLTATPIPRTL +A+SG+R+LS+IATPP RLAV+TFV YD +V+R Sbjct: 759 ERLKELRADIHVLTLTATPIPRTLQLALSGVRELSLIATPPVDRLAVRTFVLPYDPVVIR 818 Query: 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 EAILRE RGGQ +Y+ +E++++ +L ELVPE ++ + HGQM +LE VM F Sbjct: 819 EAILREHYRGGQSFYVCPRIEDLERVRLQLEELVPEVKVVVAHGQMPASQLEEVMTAFDE 878 Query: 860 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 +++VL+ T IIE+G+DIP+ANT+++ RAD FGLAQL+Q+RGRVGR+ + YA+L Sbjct: 879 HKYDVLLATNIIESGLDIPSANTLVVHRADLFGLAQLYQVRGRVGRAKVRGYAYLTYQPR 938 Query: 920 KAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELL 979 ++ AQ+RL I +L+ LGAGF LA+HD++IRGAG LLGEEQSG + +G LY ++L Sbjct: 939 TVLSATAQQRLHVIETLDSLGAGFQLASHDMDIRGAGNLLGEEQSGHIREVGVELYQQML 998 Query: 980 ENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENEL 1039 E AV ++GR S ++ L MP L+P+ ++PD+N RL+ Y+R++ E+ Sbjct: 999 EEAVADARSGRGAEQAAEDSWSPQINLGMPVLIPESYVPDLNVRLTLYRRVSDLTDRQEI 1058 Query: 1040 EEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAW 1099 + ELIDRFG LP+ LL + +++ ++ G+ L+ KG V+ F + NPA Sbjct: 1059 DAFAAELIDRFGPLPEEVDNLLRLVEIKRLCKEAGVANLDAGPKGAVVGFRNNSFRNPAR 1118 Query: 1100 LIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA 1148 L+ +QKQ +L +L ++ ++R+ VRQ M L + A Sbjct: 1119 LVDFMQKQAGTAKLRPDHKLVLLRPWDSPESRMAGVRQLMLSLAQMAAG 1167 >UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Clostridia RepID=A8MK41_ALKOO Length = 1174 Score = 1130 bits (2924), Expect = 0.0, Method: Composition-based stats. Identities = 378/1146 (32%), Positives = 629/1146 (54%), Gaps = 31/1146 (2%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 L L + + I + G V ++ + A ++++++ + + L E + Y Sbjct: 32 LYGLNDTQKSHIAYGIQDEIKGQVCIVTYNEMEARQIYEDLKFYAGDRAIFLPSKEIMFY 91 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 + + ++ R+ + + +++ ++T ++ + P S + + + G + Sbjct: 92 NMEATSRNAQEERMKAIETILEGSDCIVVTAIDTFLRLMPPPSAYTKNQISFQVGDTVDL 151 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 + + L GY D V E G+++ RG ++D+FP +E+P R++ F DEIDS+R F Sbjct: 152 EKVIENLVMQGYEREDIVEERGQFSIRGDIIDIFPSSAEMPVRVELFGDEIDSIRNFQPA 211 Query: 199 SQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE-------------VKRDPEHIY 245 +QR+L+++EA+ + A E + +E + ++ +K E + Sbjct: 212 TQRSLDKIEAVKVYAAKETTIESFDVEAVILKLNQDYKNISKKLNQAAKENLKNSLEELS 271 Query: 246 QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQADTLARF 303 +++ G+E P + E L YF N L + L +E + + F Sbjct: 272 EKLRSLGNFRGVEKLLPYIY-EKTTCLLHYFKDNALFILDEPSRLREKSEGYIEEFKESF 330 Query: 304 ENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLK--TEHLPTKAANANLGFQKLPDL 361 + V+ L L E+ LK V L + + + F P Sbjct: 331 KI-LVERGEVFPGQGKLILSYGEVIDRLKEKRIVTLSLLPKAIKDFPPKEIINFDTRPMA 389 Query: 362 AVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR 421 + + + +++ L+ + ++ R L E L +I + ++ + Sbjct: 390 SFHGKLELLGKEIQR-LQYKGYKIALIPGTKERCLKLLEFLREKEIPAEYLVGEKQDLVT 448 Query: 422 GRYLMI-GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 G +++ G GF A+I + ++ G +R+ + + +P I++ +L +G Sbjct: 449 GEVVILSGNLRRGFEYVKNKFAVITDYEIYGVHKQQRKTNKTKDASP---IKSFIDLKVG 505 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 VVH HG+G+Y G+ L+ G+ +YL + Y+ + LYVP + LI +Y G + Sbjct: 506 DYVVHEGHGIGKYIGIEELKVEGVKKDYLKIRYSGEGFLYVPTDQMDLIQKYIGSDDAPP 565 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 L+KLGG W++ + K + + D+A EL+ +YA+R +G AF D + + F + FP+E Sbjct: 566 KLNKLGGSEWAKTKTKVKKAIEDMAGELIKLYAEREKTKGHAFSPDSDWQKQFEELFPYE 625 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 TPDQ + I V DM + AMDRL+CGDVG+GKTEVA+RAAF AV + KQVA LVPTT+ Sbjct: 626 ETPDQLRCIEEVKQDMEKERAMDRLLCGDVGYGKTEVAIRAAFKAVGDSKQVAFLVPTTI 685 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LAQQHY+ F+ RF+++P+ +EM+SRF++A Q +I+ + G +DI+IGTH+LL D+++ Sbjct: 686 LAQQHYNTFKQRFSDFPITVEMLSRFKNATAQKKIIENIRTGNVDIVIGTHRLLSKDIEY 745 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 KDLGLLIVDEE RFGV+HKE +K ++ ++D+LTLTATPIPRTL+M+M G+RD+S+I PP Sbjct: 746 KDLGLLIVDEEQRFGVKHKEALKKLKKSIDVLTLTATPIPRTLHMSMIGIRDMSVIEDPP 805 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 R V+T+V Y +V +AI RE+ RGGQVYY+YN V+ I + A L ELVP+ R+A+ Sbjct: 806 EERFPVQTYVLGYSESMVVDAISRELARGGQVYYVYNRVQGIHQVANNLKELVPQGRVAV 865 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 HGQM ERELE++M ++ + +++LV TTIIETG+DI NTIII+ AD GL+QL+QLR Sbjct: 866 AHGQMSERELEKIMLEYMNGEYDILVSTTIIETGMDISNVNTIIIQDADKLGLSQLYQLR 925 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGRS+ Q YA+L+ K ++ A+KRL+AI + G+GF +A DLEIRGAG LLG Sbjct: 926 GRVGRSYRQGYAYLMYEKDKILSEVAEKRLKAIKEFTEFGSGFKIAMRDLEIRGAGNLLG 985 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 EQ G M IG+ LY++LLE V ++ ED T +EL + + + + +I + Sbjct: 986 GEQHGHMAAIGYDLYVKLLEETVGEMRGEYTEKFED-----TTIELNVNAYISEKYIGNP 1040 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 + ++ YK+IAS + + ++ ++ E+ DRFG +P AR LL I+ ++ A+ L + + Sbjct: 1041 SHKIEIYKKIASIRNKEDMYRVEEEIEDRFGDIPLSARNLLLISYIKSLAKGLKVTAITQ 1100 Query: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD--LSERKTRIEWVRQF 1138 +K I+F + + + P + +L + + FI ++ + +R Sbjct: 1101 KDKEIRIQFKDGSMLKPEGIGNVLHTYHRKVSFNATAEPYFIYKVLTMDQYKVLMELRDI 1160 Query: 1139 MRELEE 1144 + ++ Sbjct: 1161 IEKISG 1166 >UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Bacteria RepID=A9KR33_CLOPH Length = 1179 Score = 1127 bits (2915), Expect = 0.0, Method: Composition-based stats. Identities = 371/1134 (32%), Positives = 600/1134 (52%), Gaps = 33/1134 (2%) Query: 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75 L+ + L+ ++E ++I + A +++++ D+ V + Sbjct: 27 PLLITGCIDSQKCHLIHALSEGIVCK-LVITYNDIKAKEIYEDLK-LYDRNVYLYPAKDI 84 Query: 76 LPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 + Y + I+ R+ L L + ++ ++ M ++ P +L + +K+ Sbjct: 85 IFYSADIHGNAIVRERMRILKNLLERKPMTVVATIDGGMDKLLPLDYLSDKIICIKEDST 144 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 + + L +L GY QV GE+A RG ++D++P+ E PYR++ + DE+DS+R F Sbjct: 145 IEIECLSEKLIHLGYERQGQVENPGEFAIRGGIIDIYPLTEEAPYRIELWGDEVDSIRTF 204 Query: 196 DVDSQRTLEEVEAINLLPAHEFPTDKAA---------IELFRSQWRDTFEVKRDPEHIYQ 246 DV SQR++E V + PA E + A IE + E+K + Sbjct: 205 DVGSQRSIERVSTAVIYPASEIILEPEALKNGLHKLNIEQKEYVGKLRGELKTEEAARIH 264 Query: 247 QVSKGTLPAGIEYWQPL--------FFSEPLPPLFSYFPANTLLVNTGDLETSAERFQAD 298 Q+ + +E Q FF + F YF ++ ++ + AE+ +A Sbjct: 265 QIVE-EFKENLECLQGSLNLDSYIRFFYDKTCSFFDYFANDSSIIFADEPNRLAEKGEAV 323 Query: 299 TLARFENRGVDPMRPLLPPQSL--WLRVDELFSELKNWPRVQLKTEHLPTK--AANANLG 354 E+ + + P + EL + L V + T AA + Sbjct: 324 FTEFSESMVGRIEKGYILPSQMDVIYDYKELLANLSRRNSVLISTMDHKVMQLAAKKKVD 383 Query: 355 FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMR 414 + + L+ + + V+ S R L + L ++ Sbjct: 384 ITVKSVNPYNNNFEILIKDLQNW-KRNGYRVILLSGSRTRAARLAQDLRDNELPAIYSED 442 Query: 415 LDEASDRG-RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRN 473 +D +G +M G+ GF + L +I ESD+ G ++++ I++ Sbjct: 443 VDRIPVKGEIVVMHGSVHRGFEYPLIKLVIISESDIFGAEKKKKKKKP---SYEGKQIQS 499 Query: 474 LAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYA 533 +L+IG VVH HG+G Y G+ +E ++ +Y+ L Y LY+ + L +I +YA Sbjct: 500 FTDLNIGDYVVHENHGLGIYRGIEKIEVDKVSKDYIKLEYGGGGVLYILATGLDVIQKYA 559 Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 G L+KL W + K V+++A EL+++YA R AK G +F D + F Sbjct: 560 GADARKPKLNKLNSVEWKNTKAKVKGAVKEIAKELVELYATRQAKAGHSFCEDTVWQREF 619 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 + FP+E T DQ +AI+ DM MDRL+CGDVG+GKTE+A+RAAF A+ + KQV Sbjct: 620 EEMFPYEETDDQLRAIDDTKRDMESKKIMDRLICGDVGYGKTEIAIRAAFKAISDGKQVV 679 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 LVPTT+LAQQHY+ F R N+P+ ++M+ RF++ +Q + L + +G++DILIGTH++ Sbjct: 680 FLVPTTILAQQHYNTFSQRMMNFPISVDMLCRFKTPAQQKKTLENLKKGQLDILIGTHRV 739 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 L D++FK+LGLLI+DEE RFGV HKE+IK M+ ++D+LTLTATPIPRTL+M++ G+RD+ Sbjct: 740 LSKDIQFKNLGLLIIDEEQRFGVTHKEKIKQMKGDIDVLTLTATPIPRTLHMSLVGIRDM 799 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 S++ PP RL ++TFV E++ ++REAI RE+ RGGQVYY++N V + + +A LV Sbjct: 800 SVLEEPPVDRLPIQTFVLEHNDEIIREAINRELARGGQVYYVHNRVNGLDEITNTIARLV 859 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 P+A +A HGQM E +LE++M +F + +VLV TTIIETG+DI NT+II+ AD GL Sbjct: 860 PDANVAFAHGQMHEHQLEKIMFEFINGEIDVLVSTTIIETGLDISNVNTMIIDNADQLGL 919 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 +QL+QLRGRVGRS+ ++A+L+ K + A+KRL+AI +LG+GF +A DLEIR Sbjct: 920 SQLYQLRGRVGRSNRTSFAFLMYKRDKLLKEVAEKRLQAIKEFTELGSGFKIAMRDLEIR 979 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLP 1013 GAG LLG +QSG ME +G+ LY ++L +AV LK + D + T +++ M + +P Sbjct: 980 GAGNLLGAQQSGHMEAVGYDLYCKMLNDAVKGLKGE----ISDEDTFDTSIDMDMDAFIP 1035 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKL 1073 +I + +L YKRIA + E E +++ E++DRFG +P LL+IA L+ A ++ Sbjct: 1036 STYIKNEMQKLDMYKRIAGIENEEEFMDMQEEMLDRFGDIPTSVNNLLNIALLKSMAHQV 1095 Query: 1074 GIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE 1127 + L + K + + LL K + ++ F ++ Sbjct: 1096 YVSNLVQKGTEVKLSMYPKAKIKVEMIPELLLKVGNNLKMIPGATPFFTYHMAN 1149 >UniRef50_D2LDK6 Transcription-repair coupling factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LDK6_RHOVA Length = 1249 Score = 1123 bits (2906), Expect = 0.0, Method: Composition-based stats. Identities = 428/1157 (36%), Positives = 652/1157 (56%), Gaps = 36/1157 (3%) Query: 20 GELTGAACATLVAEIAERHA------GPVVLIAPDMQNALRLHDEISQF-TDQMVMNLAD 72 + A L+A IA R V+ +A D Q L ++ F V++ Sbjct: 32 SGVPEGYDAFLIAAIARRLPADTAFQQAVLHVARDDQRLAELKSQLEFFAPGADVLSFPA 91 Query: 73 WETLPYDSFSPHQDIISSRLSTLYQLPTMQRG----VLIVPVNTLMQRVCPHSFLHGHAL 128 W+ +PYD SP DI + R++TL +L + G +++ VN +QRV P + + A Sbjct: 92 WDCVPYDRVSPDSDIEARRIATLARLAHAKGGKPAIIVLTTVNAALQRVPPLAAMKKSAA 151 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 + G R+S + + +L+ +G+ VME GEYA RG +LDL+ G P RLDFF D Sbjct: 152 RLAAGGRVSMEQVIVRLEGSGFMRTGTVMEPGEYAVRGGILDLYVPGHARPARLDFFGDT 211 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQV 248 ++++R FD +QRT + + LLP E P+ AA+++FR ++ + F + + +Y+ V Sbjct: 212 LETIRTFDPVTQRTQATRDGVTLLPISEIPSGDAAVKMFRQRYVELFGPGKGDDALYEAV 271 Query: 249 SKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN-------TGDLETSAERFQADTLA 301 S GT G+E+W PLF+ + + LF Y P + ++ LET A+ ++A Sbjct: 272 SAGTRYPGVEHWLPLFY-DGMDSLFDYLPNAVVTLDHLADDAAARRLETIADHYEARREG 330 Query: 302 RFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDL 361 + P L P++L+L +E ++L + + P A + F+ Sbjct: 331 LEQRSFGAPPYKPLKPEALYLAAEEWDAKLGERKVRRFEPFPQPDAKAVVQIDFKGKQGR 390 Query: 362 AVQAQQKAPLDALR-------KFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMR 414 + ++ D L + +++ V + + G RE LG +L+ +++ Sbjct: 391 SFALERSESSDKLIPAVADHIRVMQSLGKRAVIACWTNGARERLGNMLSTHISRIEKVAN 450 Query: 415 LDE---ASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLI 471 + E A + E G+ LA+I E D+LG+R+ RRR+ + ++ Sbjct: 451 IAEVRKADKSAVSFALLGIESGYETPD--LAIIAEQDILGDRLIRRRKAKK----ASDVL 504 Query: 472 RNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISR 531 + L G +VH +HG+GR+ G+ T++A G + + L YA KL++P+ ++ L++R Sbjct: 505 VEASSLTPGDLMVHADHGIGRFIGLKTIDAAGAPHDCVELEYAGGDKLFLPIENMELLTR 564 Query: 532 YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 591 Y G E A L KLGG +W + K +++R +A EL+ + A R K + Y Sbjct: 565 Y-GSDEGTAQLDKLGGASWQGRKAKLKKRIRAMAEELIKVAALREMKPAPVLQVSDGAYN 623 Query: 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ 651 F FP+E T DQ +I AV D+ + MDRLVCGDVGFGKTEVA+RAAF+AV KQ Sbjct: 624 EFVTRFPYEETDDQLASIEAVADDLAKGRPMDRLVCGDVGFGKTEVALRAAFIAVMEGKQ 683 Query: 652 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 711 VAV+VPTTLLA+QHY F +RF +PV++ SR + KE T + G++DI++GTH Sbjct: 684 VAVVVPTTLLARQHYQTFVNRFQGFPVKVAQASRLVTPKEMTLTREGLKAGQVDIVVGTH 743 Query: 712 KLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR 771 LL + FKDLGLLIVDEE FGV HKER+K +R V +LTLTATPIPRTL +A++G+R Sbjct: 744 ALLAKSIGFKDLGLLIVDEEQHFGVAHKERLKNLREEVHVLTLTATPIPRTLQLALTGVR 803 Query: 772 DLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 831 ++S+IATPP RLAV+TF+ +D + +REA+LRE RGGQ +Y+ + ++ + A L E Sbjct: 804 EMSVIATPPVDRLAVRTFITPFDPVTLREALLRERYRGGQSFYVVPRISDLDEVATFLRE 863 Query: 832 LVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 VPE R HGQM +LE +M+ F+ + F+VL+ TTI+E+G+DIP ANT+I+ RAD F Sbjct: 864 QVPEIRFMQAHGQMAPTQLEDIMSAFYDKEFDVLLSTTIVESGLDIPNANTLIVHRADMF 923 Query: 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLE 951 GLAQL+QLRGRVGRS +AYA P +T A+KRL+ + SL+ LGAGF LA+HDL+ Sbjct: 924 GLAQLYQLRGRVGRSKTRAYAMFTIPPNGKITPQAEKRLKVLHSLDSLGAGFTLASHDLD 983 Query: 952 IRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSL 1011 +RGAG LLG+EQSG ++ +G+ LY +LE AV ALKA E+ + + +P L Sbjct: 984 LRGAGNLLGDEQSGHIKEVGYELYQSMLEEAVAALKANGGEEREEEEQWSPTINVGLPVL 1043 Query: 1012 LPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQ 1071 +P+ ++PD+ RL Y+R++ +LE EL DRFG PD + LL + +++ + Sbjct: 1044 IPEVYVPDLQVRLGLYRRLSGLHESADLENFAAELADRFGPPPDEVKHLLTVVQIKNYCR 1103 Query: 1072 KLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTR 1131 K GI +++ KG VI F K NP L+ + + +L +L + ++ + R Sbjct: 1104 KAGIAQVDAGPKGAVITFRNKKFANPQGLVKFMYEHGVQVKLQIDQKLVYKEEWDDGVER 1163 Query: 1132 IEWVRQFMRELEENAIA 1148 + R +REL A Sbjct: 1164 LRGARALVRELAAIAKG 1180 >UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clostridiales RepID=C4ZBV9_EUBR3 Length = 1177 Score = 1123 bits (2904), Expect = 0.0, Method: Composition-based stats. Identities = 392/1156 (33%), Positives = 620/1156 (53%), Gaps = 38/1156 (3%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 + A + ++ H +++ Q A L+DE S F D+ V+ + L Y Sbjct: 30 VTGCIDAQKSQMIYAFGG-HRKNKLIVTFGEQKAKELYDEYSFF-DKEVVYYPSKDVLFY 87 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 S + + R+ L + +R L+ + LM + P + + L +++GQ L Sbjct: 88 QSDIRGNLLTAERIRALKAIREQERVTLVTTFDALMNTMAPIEKMWENVLTLEQGQLLDL 147 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 ++ L GY QV G+++ RG +LD+FP+ E P R++ + DEID++R FD + Sbjct: 148 KEIQAALIRMGYEKEYQVQTMGQFSVRGGILDVFPLTEENPIRIELWGDEIDTIRYFDCE 207 Query: 199 SQRTLEEVEAINLLPAHEFPTDKA----AIELFRSQWRDTFEVKRD-------------P 241 SQ+++E ++ +++ PA E I+ +++ + + R Sbjct: 208 SQKSIENIDRVSIYPAAELVLSDEEKAGGIDKLKAEAKRVSDKLRKQMKTEEAHRVTVMA 267 Query: 242 EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLA 301 + + ++ + ++ AG++ + FF E + + YF + L+ +L E+ + Sbjct: 268 DELTEEWGELSMYAGMDAFLSYFFDERVG-ILDYFNPSDSLIFFDELTRCTEQGKLTETE 326 Query: 302 RFENRGVDPMRPLLPPQSL--WLRVDELFSELKNWPRVQLKTEHLPTKAAN--ANLGFQK 357 E+ + P + E+ ++L + + L + + G Sbjct: 327 FSESMKQRLAMGYILPGQMNGLFTEKEIVAKLGKYSCIALAALDNKANGLHQLGSYGIHC 386 Query: 358 LPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD- 416 + + L+++ + V+ S R + L E + I D Sbjct: 387 QSVSPYNNSFELLIKDLKRY-KKNGYRVILLSGSRTRAKRLSEDITDQGITCFYTENYDH 445 Query: 417 EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAE 476 E + + G GF + A+I ESD+ G A++++ R I++ + Sbjct: 446 ELFEGQIMVCYGKVRRGFEYPILKFAVITESDIFG---AQQKKKKRHRTYEGEKIQSFTD 502 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 L +G VVH HG+G Y G+ LE +Y+ + Y + LY+ + L +I +YAG Sbjct: 503 LSVGDYVVHENHGLGIYRGIEKLEVDKKVKDYIKIEYQGGSNLYILATQLDMIQKYAGKD 562 Query: 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596 L+KLGG W+R + + V+ +A +L+ +YAQR + G+AF D + F + Sbjct: 563 ARKPKLNKLGGQEWTRTKNRVRGAVKQIAGDLVKLYAQREQQNGYAFGEDTVWQREFEEL 622 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 FPF+ T DQ AI A +DM MDRL+CGDVG+GKTEVA+RAAF AV + KQVA L Sbjct: 623 FPFDETEDQILAIEATKTDMQSHKIMDRLICGDVGYGKTEVAIRAAFKAVQDSKQVAYLA 682 Query: 657 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS 716 PTT+LAQQ YD F R ++PV ++++ RFRSA EQ + + ++ +G++DI+IGTH++L Sbjct: 683 PTTILAQQIYDTFSQRMKDFPVNVDLMCRFRSAAEQKKTIEKLKKGEVDIIIGTHRILSK 742 Query: 717 DVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 776 DV+FKDLGLL++DEE RFGV HKE+IK M+ NVD+LTLTATPIPRTL+M++ G+RD+S++ Sbjct: 743 DVQFKDLGLLVIDEEQRFGVTHKEKIKQMKVNVDVLTLTATPIPRTLHMSLIGIRDMSVL 802 Query: 777 ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 PP R+ ++T+V EY+ +VREAI RE+ R GQVYY+YN V +I +L ELVP+A Sbjct: 803 EEPPMDRVPIQTYVMEYNDELVREAINRELARNGQVYYVYNKVRDIADITAKLQELVPDA 862 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 +A HGQM+E ELER+M F + +VLV TTIIETG+DI NT+II AD+ GL+QL Sbjct: 863 TVAFAHGQMKETELERIMYRFINGEIDVLVSTTIIETGLDISNVNTMIIHDADNMGLSQL 922 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 +QLRGRVGRS+ AYA+L+ K + A+KRL AI DLG+GF +A DLEIRGAG Sbjct: 923 YQLRGRVGRSNRTAYAFLMYRRNKMLKEVAEKRLAAIKEYSDLGSGFKIAMRDLEIRGAG 982 Query: 957 ELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 LLG EQSG ME +G+ LY ++L AV K + S + T V++ + +P + Sbjct: 983 NLLGAEQSGHMEAVGYDLYCKMLSEAVKEAKGIEDISDK----FDTTVDIVTDAYIPAGY 1038 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076 I + +L YKRIA +TE E +E+ ELIDRFG P +LL +ARL+ A + I Sbjct: 1039 IANEFQKLDIYKRIAGIETEEEKDEMLEELIDRFGEPPKSVLSLLRVARLKALAHAVYIT 1098 Query: 1077 KLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE-----RKTR 1131 +++ + E+ +NP + L+ + + + F DL ++ Sbjct: 1099 EIKQTGSLIKLTMFERARINPEKIPELIARYKSSLKFNMAENPYFTFDLKNGSVAKKRDV 1158 Query: 1132 IEWVRQFMRELEENAI 1147 ++ V + + ++ + I Sbjct: 1159 LDVVEELISQMRKELI 1174 >UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Staphylococcus RepID=C4WBZ1_STAWA Length = 1169 Score = 1121 bits (2899), Expect = 0.0, Method: Composition-based stats. Identities = 402/1165 (34%), Positives = 652/1165 (55%), Gaps = 37/1165 (3%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 ++++ V + L+ L+ +A AT++AE ++L+ ++ A ++ +I Q+ Sbjct: 13 KRFQELDQVFGQDNILVTGLSPSAKATIIAEKYLADQKQMLLVTNNLYQADKIEADILQY 72 Query: 63 -TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 + + + + + + + ++S R+ TL L ++G+ IVP+N L + + P Sbjct: 73 VSGEEIYKYPVQDIMTEEFSTQSPQLMSERVRTLTALAHGEKGLFIVPLNGLKKWLTPVE 132 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 H + + G + D +L + GYR V GE++ RG ++D++P+ P R Sbjct: 133 MWRNHQMTLNVGDDIDVDDFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIG-SPVR 191 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP 241 ++ FD EIDS+R FDV++QR+ + +E++++ A ++ I ++Q + +E R Sbjct: 192 IELFDTEIDSIRDFDVETQRSNDNLESVDITTASDYIITDEVISHLQTQLKAAYEDTRPK 251 Query: 242 EHIYQQVSKGTLPAGIEYWQPLFFSEPL------------PPLFSYFPANTLL-VNTGDL 288 + + ++ FF L + YF + ++ V+ + Sbjct: 252 IEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMYDQPSTIIDYFANDVVIAVDEYNR 311 Query: 289 ETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPR--VQLKTEHLPT 346 E + F + ++ + +++ D + L P L T +P Sbjct: 312 IKETEETLTTEVDDFISNLIESGNGFI--GQSFMQYDGFETLLDERPVAYFTLFTSSMPV 369 Query: 347 KAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIK 406 + + + F P Q ++F+ D +V VE+E + E + +L + Sbjct: 370 ELDHI-IKFSCKPVQQFYGQYDIMRSEFQRFIHN-DYAIVVLVETETKVERIQSMLNEMH 427 Query: 407 IAPQRIMRLDEASDRGRYLMI-GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTI 465 I + +D+AS G+ +++ G+ GF L +I E +L + ++R+ ++ Sbjct: 428 IPV--VTHIDQASTSGQAVVVEGSLSEGFELPYMQLVVITERELFKTKQKKQRKRTKTMS 485 Query: 466 NPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSS 525 N + I++ +L++G VVH+ HGVGRY G+ TLE G +Y+ L Y +L+VPV Sbjct: 486 NAEK-IKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGEQHRDYIKLQYKGTDQLFVPVDQ 544 Query: 526 LHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKH 585 + + +Y +++ L+KLGG W + + K + V D+A EL+D+Y QR G+ F Sbjct: 545 MDQVQKYVASEDKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKQREMSVGYQFGP 604 Query: 586 DREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA 645 D E+ F FP+E TPDQ+++I + DM + MDRL+CGDVG+GKTEVA+RAAF A Sbjct: 605 DTEEQSTFELDFPYELTPDQSKSIEEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKA 664 Query: 646 VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID 705 V KQVA LVPTT+LAQQHY+ +R ++PV I++ISRFRS KE + + G +D Sbjct: 665 VMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLISRFRSTKEVKETKEGLKSGYVD 724 Query: 706 ILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNM 765 I++GTHKLL D+ +KDLGLLIVDEE RFGVRHKERIK ++ NVD+LTLTATPIPRTL+M Sbjct: 725 IVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKNNVDVLTLTATPIPRTLHM 784 Query: 766 AMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKA 825 +M G+RDLS+I TPP R V+T+V E ++ ++EA+ RE+ R GQV+YLYN V++I + Sbjct: 785 SMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEK 844 Query: 826 AERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 885 E+L L+P+A IA+ HGQM ER+LE M F + +++LV TTIIETG+D+P ANT+II Sbjct: 845 REQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLII 904 Query: 886 ERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFAL 945 E AD FGL+QL+QLRGRVGRS YA+ L P K + A++RL+AI +LG+GF + Sbjct: 905 EEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKI 964 Query: 946 ATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVE 1005 A DL IRGAG LLG++Q G ++++GF LY ++LE AV+ + +E E EVE Sbjct: 965 AMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKE---ETPDVPDVEVE 1021 Query: 1006 LRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIAR 1065 L + + LP ++I + ++ YK++ ++E +L +IK ELIDRF P LLDI Sbjct: 1022 LNLDAYLPAEYIQNEQAKIEIYKKLRKVESEEQLMDIKDELIDRFNDYPTEVERLLDIVE 1081 Query: 1066 LRQQAQKLGIRKLEGNEKGGVIEFAE--KNHVNPAWLIGLLQKQPQHYRL---DGPTRLK 1120 ++ A GI K++ K I +E ++ L Q + ++ +G ++ Sbjct: 1082 IKTHALHAGITKIKDMGKQIQIFLSETSTADIDGEALFKNTQPLGRTMKVGVENGAMKVT 1141 Query: 1121 FIQDLSERKTRIEWVRQFMRELEEN 1145 + K ++ ++ ++ +EE+ Sbjct: 1142 LTKS----KQWLDNLKFLVKCIEES 1162 >UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clostridiales RepID=C5EM54_9FIRM Length = 1186 Score = 1119 bits (2894), Expect = 0.0, Method: Composition-based stats. Identities = 405/1178 (34%), Positives = 636/1178 (53%), Gaps = 56/1178 (4%) Query: 13 AGEQRLLGELTGAACATLVAEIAERHAGPV-VLIAPDMQNALRLHDEISQFTDQMVMNLA 71 G ++ G L + L+ E+ E A P +++ D A ++D+ FT Q V Sbjct: 17 KGPLQVTGTL-DSQKVHLMYELGEGAAFPWKLVVTYDDTRAKEIYDDFRNFTKQ-VWLYP 74 Query: 72 DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 + L Y + + R++ L L Q GV++ ++ LM + P +L A+ ++ Sbjct: 75 AKDLLFYSADIHGNLMTRQRIAVLRHLMEDQGGVVVTTMDGLMDHLLPLQYLKEQAITVE 134 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 GQ + + R +L + GY + QV G+++ RG ++D+FP+ E+P R++ +DDE+DS Sbjct: 135 SGQVIDLNVWRQRLTAMGYERMAQVDGMGQFSIRGGIIDIFPLTEEVPLRIELWDDEVDS 194 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP---------- 241 +R FD++SQR++E+++A+ + PA E DK +E + R + Sbjct: 195 IRTFDLESQRSVEQLDAVTIYPAAEVVLDKKQLEAGTDRLRKEAKTYEKALREQHKTEEA 254 Query: 242 -------EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAER 294 E + + +G G++ + F + + YFP +V + E+ Sbjct: 255 HRIHSIIEELADGLREGWKLGGLDAYIRYFCPDTV-SFLEYFPKGESVVYLDEPARLREK 313 Query: 295 FQADTLARFENRGVDPMRPLLPPQ--SLWLRVDELFSELKNWPRVQLKT--EHLPTKAAN 350 + L E+ + L P L V+E+ + ++ V L + LP N Sbjct: 314 GETVELEFRESMVHRLEKGYLLPGQTELLYPVEEVMARVQRPLTVMLTGLDQKLPGMKVN 373 Query: 351 ANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQ 410 + Q + + L ++ + V+ S R L L + Sbjct: 374 HKFSIDVKNVNSYQNSFEILIKDLTRWKKE-GYRVILLSASRTRASRLASDLREYGLRAY 432 Query: 411 RIMRLDEASDRG----------------RYLMIGAAEHGFVDTVRNLALICESDLLGERV 454 + + G + G+ GF + I E D+ G V Sbjct: 433 CPDGAEPEMETGDGREAKDAHPKVKPGEIMVTYGSLHRGFEYPLLKFVYITEGDMFG--V 490 Query: 455 ARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA 514 ++++ ++T I++ +EL +G VVH EHG+G Y G+ +E + +Y+ + Y Sbjct: 491 EKKKKRRKKTNYQGKAIQSFSELSVGDYVVHEEHGLGIYKGIEKVERDKVIKDYIKIEYG 550 Query: 515 NDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQ 574 + LY+P + L I +YAG + L+KLGG W + + + V+++A +L+ +YA Sbjct: 551 DGGNLYLPATRLESIQKYAGADAKKPKLNKLGGTEWGKTKTRVKGAVQEIAKDLVKLYAA 610 Query: 575 RAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGK 634 R K GF + HD + F + FP++ T DQ AI+AV +DM MDRL+CGDVG+GK Sbjct: 611 RQEKAGFQYGHDTVWQREFEELFPYDETDDQMDAIDAVKTDMESRRIMDRLICGDVGYGK 670 Query: 635 TEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQ 694 TEVA+RAAF AV + KQV LVPTT+LAQQHY+ F R ++PVR++M+SRF + Q + Sbjct: 671 TEVALRAAFKAVQDSKQVVYLVPTTILAQQHYNTFVQRMKDFPVRVDMLSRFCTPARQKR 730 Query: 695 ILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTL 754 L ++ +G +DI+IGTH++L D++FKDLGLLI+DEE RFGV HKE+IK ++ NVD+LTL Sbjct: 731 TLEDLRKGMVDIVIGTHRVLSKDMQFKDLGLLIIDEEQRFGVAHKEKIKQLKENVDVLTL 790 Query: 755 TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYY 814 TATPIPRTL+M+++G+RD+S++ PP R ++T+V EY+ +VREAI RE+ R GQVYY Sbjct: 791 TATPIPRTLHMSLAGIRDMSVLEEPPVDRTPIQTYVMEYNEEMVREAINRELARNGQVYY 850 Query: 815 LYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874 +YN V +I + A R+ LVPEA + HGQMRE ELER+M DF + +VLV TTIIETG Sbjct: 851 VYNRVTDIDEVANRIQALVPEAVVTFAHGQMREHELERIMADFINGEIDVLVSTTIIETG 910 Query: 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIA 934 +DIP ANT+II AD GL+QL+QLRGRVGRS+ +YA+L+ K + +A+KRL+AI Sbjct: 911 LDIPNANTMIIHDADRMGLSQLYQLRGRVGRSNRTSYAFLMYRRDKLLKEEAEKRLQAIR 970 Query: 935 SLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSL 994 +LG+G +A DLEIRGAG +LG EQ G ME +G+ LY ++L AV ALK + Sbjct: 971 EFTELGSGIKIAMRDLEIRGAGNVLGAEQHGHMEAVGYDLYCKMLNEAVLALKGEK---- 1026 Query: 995 EDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLP 1054 D S +T VE + + +P +I + +L YKRI++ +TE+E +++ EL+DRFG +P Sbjct: 1027 PDEDSYETVVECDIDAYIPSSYIKNEYQKLDIYKRISAIETEDEYMDMQDELMDRFGDIP 1086 Query: 1055 DPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLD 1114 LL IA LR A + + ++ N + + +K + + L++ +L Sbjct: 1087 RSVDNLLMIAGLRALAHQAYVTEVVINRQEIRLSMYQKARLQIEKIPELVKAYKGDLKLV 1146 Query: 1115 GPTRLKF--------IQDLSERKTRIEWVRQFMRELEE 1144 F QD + + + + + EL E Sbjct: 1147 PGEVPAFHYIDRRNKNQDSLAMVEKAKEILKGLGELRE 1184 >UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamily II helicase) n=2 Tax=Clostridiales RepID=C4Z4L4_EUBE2 Length = 1206 Score = 1116 bits (2888), Expect = 0.0, Method: Composition-based stats. Identities = 382/1199 (31%), Positives = 620/1199 (51%), Gaps = 67/1199 (5%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 EQ L G ++ + IA + ++I D A + ++ F Sbjct: 15 EQLNKELAKDGGRTVMVSGCIDTQKLHFSSAIASNYNFQ-LVITSDEGKARDMAEDARFF 73 Query: 63 TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQL--------------------PTMQ 102 VM + + Y++ + I R+ + + + Sbjct: 74 NGGNVMYYPAKDVIFYNADVQGRQIAGERIRCIAAIIDRLNKSDIVKSGTEKSTEEASDG 133 Query: 103 RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEY 162 ++ ++ + + P + +KKG L + + +L + G+ V G++ Sbjct: 134 PLTIVTTIDGISDMLLPVDRFKRAVINLKKGDILDVEDMAKKLTAMGFERFGMVEAKGQF 193 Query: 163 ATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKA 222 A RG ++D+F E P R++ +DDEIDS+R FD DSQR++E ++ + PA EF + Sbjct: 194 AIRGGIIDIFSYTDEAPVRIELWDDEIDSIRAFDADSQRSIENYKSYTVFPATEFLFTED 253 Query: 223 AIE---------------LFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSE 267 IE LF + R + + + + ++ L G F++ Sbjct: 254 EIEQGIEKIRHEKDEQMKLFGADKRKRTKEQIEAGNHLNRMFDDALRTGDYSKFIYTFAD 313 Query: 268 PLPPLFSYFPANTLLVNTGD---LETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRV 324 + L YFP L+ + L+ ++ + +NR ++ L +++ + Sbjct: 314 RVSSLAEYFPKGDTLIVVDEPVRLKEHSDMTFYEYSESMKNR-LESGYVLPSQTHMFMDM 372 Query: 325 DELFSELKNWPRVQLKT-EHLPTK-AANANLGFQKLPDLAVQAQQKAPLDALRKFLETFD 382 + + ++ L T E+ P + ++ + + + D +RK+ + Sbjct: 373 ETAVLSMNGHKQLVLTTLEYTPEFFGIDYSMHIEARSISSYNNSFEYLSDDIRKY-KRNK 431 Query: 383 GPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY-LMIGAAEHGFVDTVRNL 441 V+ S R + + L R+ I +++ G + G+ GF ++ Sbjct: 432 YAVLLVCSSRTRANRIVDDLGRLGIESFYTEDSNKSMAGGLVMVTYGSLHRGFEYPLQGF 491 Query: 442 ALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEA 501 I E+D+ E+ +R + I EL+IG VVH +G+G+Y G+ ++ Sbjct: 492 VCIAENDIFTEKKRKRVKKKEYDGKN---IAGFNELNIGDYVVHENYGIGQYKGIEKIKV 548 Query: 502 GGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA-EENAPLHKLGGDAWSRARQKAAEK 560 G+ +Y+ ++YA+++ LYV + L + ++AG E+ L+K+GG W + + K Sbjct: 549 EGVEKDYIKISYADNSNLYVLATQLDRLQKFAGSDVEKKPKLNKIGGSEWGKTKSKVHSA 608 Query: 561 VRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPL 620 V +VA +L+++YA R EG+ F D Q F + FP+E T DQ AI DM Sbjct: 609 VEEVAKDLVELYATRQRIEGYQFGPDTVWQQEFEEMFPYEETTDQLNAIEDTKHDMESRR 668 Query: 621 AMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRI 680 MDRL+CGDVG+GKTE+A+RAAF AV KQVA LVPTT+LA QH+ F R ++PV + Sbjct: 669 VMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVAYLVPTTVLASQHFTTFEQRMKDFPVTV 728 Query: 681 EMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE 740 +S FR++ + + + E+ +G +DI+IGTH+LL DV FKDLGLLI+DEE RFGV HKE Sbjct: 729 AQLSSFRTSAQNKETIEELKKGMVDIVIGTHRLLSKDVVFKDLGLLIIDEEQRFGVTHKE 788 Query: 741 RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVRE 800 +IK ++ NVD+LTL+ATPIPRTL+M+++G+RD+S++ PP R+ ++TFV E++ ++RE Sbjct: 789 KIKKLKNNVDVLTLSATPIPRTLHMSLAGIRDMSVLEEPPVDRVPIQTFVTEHNDEMIRE 848 Query: 801 AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ 860 AI RE+ R GQVYY+YN V +I +AA + ELVP+A +A HGQM +RELE++M DF + Sbjct: 849 AITRELARNGQVYYVYNRVRSIDEAAAHIQELVPDANVAYAHGQMAKRELEKIMCDFVNG 908 Query: 861 RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 920 +VLV TTIIETG+DI NT+IIE AD FGL+QL+QLRGRVGRS AYA+LL K Sbjct: 909 EIDVLVSTTIIETGMDISNCNTMIIEDADRFGLSQLYQLRGRVGRSSRTAYAFLLYRRDK 968 Query: 921 AMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLE 980 +T A+KRL I D G+GF +A DLEIRGAG +LG Q G M +G+ LY ++L Sbjct: 969 VLTEVAEKRLSVIREFADFGSGFKIAMKDLEIRGAGNVLGNSQHGHMAAVGYDLYCKMLN 1028 Query: 981 NAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELE 1040 AV+ LK +++ +T +++ + + +P +I +L YKRIA+ + +EL Sbjct: 1029 QAVNNLKG-----IKNEYEFETTIDVDVDAYIPATYIKSEYQKLDIYKRIAALENMDELS 1083 Query: 1041 EIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK---------GGVIEFAE 1091 +++ EL DR+G +P A LL IA ++ +A KLG+ +++G V+ Sbjct: 1084 DMRDELSDRYGSVPSCADNLLMIALIKSKAHKLGMIEIKGGVAHQESGTAVWRTVMTVYP 1143 Query: 1092 KNHVNPAWLIGLLQKQPQHYRLDGPTRLKFI-----QDLSERKTRIEWVRQFMRELEEN 1145 K ++P + LL + ++ FI + + K ++ + M E Sbjct: 1144 KAELDPDAIKKLLDEYGGAIQMRVDANPAFIWTVTKKKFTNAKEYLKGLNALMDVFMER 1202 >UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Ammonifex degensii KC4 RepID=C9RA21_AMMDK Length = 1123 Score = 1114 bits (2881), Expect = 0.0, Method: Composition-based stats. Identities = 413/1147 (36%), Positives = 612/1147 (53%), Gaps = 42/1147 (3%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 P + ++AG+ + + L+G A + L+A +V++ PD + AL L E+ Sbjct: 12 PSVQKIKTALQAGKPQAVYGLSGTALSFLLAATFREWPAGMVIV-PDEETALTLAAELKL 70 Query: 62 FTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 + V E P + RL +L L Q GV++ L+Q + P Sbjct: 71 LWGEEVFVFLPREIFGLGPSLPSAFVPRQRLLSLAALARRQ-GVVVATAPALLQGLAPPE 129 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 H + KG+ LS + L +L GY V V G++A RG ++D FP S LP R Sbjct: 130 NFSPHCWELWKGEELSPEELGQRLVETGYVRVSAVEVPGQFARRGGIVDFFPPSSPLPVR 189 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP 241 ++F DEI + FD SQR+ +EA+ + PA E P E+ W F + + Sbjct: 190 VEFDGDEIARIATFDPASQRSQTRLEAVKVEPAVEVPNPCTGREILPESW---FLSQGED 246 Query: 242 EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLA 301 Y +V P F + L +Y P L +A+ Sbjct: 247 SFPYPEV-----------LLPCLFPR-VVSLLAYLPPGAPLALVEAQAAEKAAREAEERQ 294 Query: 302 RFENRGVDPMRPLLPPQS-LWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 360 R + + L +L E+ EL +P +L+ LP K LG Sbjct: 295 MEICREMIAKKKLPEESRKAFLSWSEVAKELSLYPH-RLRLSFLPEKNGEV-LGLAVRTA 352 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 + + + +++F+ + V+ V+ E R + + E L I P+ +++ Sbjct: 353 PSFLGKFAQLAEEIQEFMRHY--RVILLVDKEERVKGVVEGLKEYGIIPRLT---PDSAP 407 Query: 421 RGRYLMI--GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELH 478 G ++ G GF+ L+ +++ G R A + P ++ E Sbjct: 408 VGTVTVVKGGNLREGFIFPEAQFVLLTPAEIFGRRQA------TFSPTPTPVVEEEREFK 461 Query: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEE 538 G+ VVH EHG+G Y G+ L G+T EY ++ YA + +LY+P L ++ RY GG Sbjct: 462 PGEYVVHPEHGIGIYRGLVQLSVEGVTREYALIQYAGEDRLYLPADQLGVLERYVGGEGA 521 Query: 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFP 598 L +LGG W R R + + DVA ELL +YA R +G AF D + F +FP Sbjct: 522 KPRLSRLGGGEWKRVRARVKQAATDVARELLRLYAMRETAKGHAFSPDTPWQREFEAAFP 581 Query: 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 658 +E TPDQ +AI V +DM +P MDRL+CGDVGFGKTE+A+RAAF AV + KQVAVLVPT Sbjct: 582 YEETPDQLRAIADVKADMEKPRPMDRLICGDVGFGKTEIALRAAFKAVMDGKQVAVLVPT 641 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 T+LAQQHY F RFA +P+R+ + RF++ EQ +++ + G IDI+IGTH+LLQ+DV Sbjct: 642 TILAQQHYRTFSSRFAPYPIRVAWLCRFQTPAEQREVIKGLKAGTIDIVIGTHRLLQNDV 701 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 +F+DLGL+I+DEE RFGV KE++K +R VD+LTLTATPIPRTL M++ G+RD S + T Sbjct: 702 QFRDLGLVIIDEEQRFGVLQKEKLKLLRKEVDVLTLTATPIPRTLYMSLVGLRDTSCLTT 761 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 PP RL V+T+V E D ++REAI RE+ RGGQVY++YN V I + A + LVPEAR+ Sbjct: 762 PPPDRLPVETYVVEEDPAIIREAIRRELARGGQVYFVYNRVAGIVEVANWVKHLVPEARV 821 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 A HGQM E LER+M DF +++VLV TTI+E G+DI NT+I++ AD GL+QL+Q Sbjct: 822 AYAHGQMPEAALERIMLDFIDHKYDVLVATTIVENGLDIGNVNTLIVKDADQLGLSQLYQ 881 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 LRGRVGR++ AYA+ L K + A+ RL AI LGAGF +A DLEIRGAG L Sbjct: 882 LRGRVGRTNRLAYAYFLYRRDKIINEAAKARLRAIKDFTSLGAGFKVAKRDLEIRGAGNL 941 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIP 1018 LG EQ G ++ +G LY LL+ A+ LK E + +EL + + +PDD++P Sbjct: 942 LGTEQHGHIQAVGLELYCRLLQEAIKELKGE-----EVVPPVDPVIELTVSAYIPDDYVP 996 Query: 1019 DVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 + +L Y+ ++ A+T E+E + DR+G P P R LL +ARLR QA++L ++ + Sbjct: 997 -FDQKLEIYQELSRAETPEEVEGLAEGYRDRYGPFPPPFRNLLAVARLRAQAKRLRLKLI 1055 Query: 1079 EGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDL---SERKTRIEWV 1135 + FA + ++PA L+ + K ++ +G + + E + ++ + Sbjct: 1056 GRQGGFYRLVFAPGHQLSPAKLVAVADKWGARFKQEGEDFVILLPASGRGPEGEPELKKL 1115 Query: 1136 RQFMREL 1142 QF+ L Sbjct: 1116 SQFLVAL 1122 >UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Peptococcaceae RepID=B1I198_DESAP Length = 1176 Score = 1111 bits (2875), Expect = 0.0, Method: Composition-based stats. Identities = 434/1177 (36%), Positives = 638/1177 (54%), Gaps = 44/1177 (3%) Query: 1 MPEQYRYTLPVKAG-------EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNAL 53 + E R T +K +++ + + G A + A +A R P+++I P + A Sbjct: 4 LTEFLRETPALKTAVSGLARYKRQHVLGVGGGHQALVCAALA-RDPAPLLIITPGEREAA 62 Query: 54 RLHDEI-SQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNT 112 L D++ + + + + WE LP + ++I R+ L L T V+I PV+ Sbjct: 63 ALADDLVTLLPGRGIFVFSAWELLPVQVLAYSREIGVRRMRVLEALITGTNPVVIAPVDA 122 Query: 113 LMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLF 172 L + + P L V++ GQ + ALR +L S GY V QV G+++ RG + DLF Sbjct: 123 LARLLPPSGVLRERIFVLEGGQSWTMGALRGRLLSMGYEAVSQVDTAGQFSIRGGIADLF 182 Query: 173 PMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTD----KAAIELFR 228 P + P R++FF DEI SLR FD ++QR+ + + + PA E + +A IE Sbjct: 183 PYTARYPIRVEFFGDEIASLRTFDPETQRSRAATDRVTVAPATELVVEDDAWEAGIETLT 242 Query: 229 SQWRDTFE-------------VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSY 275 ++R+ + ++ E I + + GIE F+ + L Y Sbjct: 243 REYREQLDRLEKQGDTEGARRLREWVEEILPHLDARSHTPGIEDLLAYFYPQA-ATLMDY 301 Query: 276 F-PANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW 334 PA + V D A A ++ R L L+L ++LF+ L + Sbjct: 302 LGPAGVVAVTEPDRVAEVAESFAQHRAHGYAVLLEQGRLLPGQFRLYLDREQLFAALAPF 361 Query: 335 PRVQLKTEHL--PTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESE 392 V L ++ + F+ + A L +R+ + VV V + Sbjct: 362 RTVYLSLFGRVGAFSRSDREIRFEVRELPGNLGRTGAVLGEIRR-RQVAGQRVVLLVGTG 420 Query: 393 GRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGE 452 R L L + +A + L + + +G GF LA++ E ++ G+ Sbjct: 421 ERARRLLNSLRQSGLAAFQAYELGQVQPGQVAVGVGRLNKGFEIAESQLAVLTEREIYGK 480 Query: 453 RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLT 512 ++ QD R + L G VVH+ HG+GRY G+ LE G + EYL++ Sbjct: 481 QL----QDRREPYRLRRRTLDELNLAPGDFVVHVNHGIGRYHGIVLLEIGEVKREYLLIN 536 Query: 513 YANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIY 572 Y + KLYVP L L+ +Y G E +LGG W+R++++ E VR++A ELL +Y Sbjct: 537 YLGEDKLYVPTDQLGLVQKYIGAEGETPRCSRLGGSEWARSKKRVREAVREMAQELLKLY 596 Query: 573 AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632 A R + G+ F D + F +FPFE TPDQ +AI V DM +P MDRL+CGDVG+ Sbjct: 597 AARQSLPGYRFPADNPWQREFELAFPFEETPDQLKAIMQVKKDMERPRPMDRLLCGDVGY 656 Query: 633 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ 692 GKTEVAMRA F AV + KQ AVLVPTT+LAQQH FR+RF +PV IEM+SRFRS +EQ Sbjct: 657 GKTEVAMRAVFKAVTDGKQAAVLVPTTVLAQQHLQTFRERFNGYPVVIEMLSRFRSVREQ 716 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 Q+LA++A GK+DI+IGTH+L+Q DV+F DLGL++VDEE RFGV HKE++K NVD++ Sbjct: 717 KQVLADLAAGKVDIVIGTHRLVQDDVQFADLGLIVVDEEQRFGVLHKEKLKLRHPNVDVI 776 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 TLTATPIPRTL M++ G+RD S++ TPP R V+TFV E D +++REA+ RE+ RGGQV Sbjct: 777 TLTATPIPRTLYMSLVGIRDTSLLETPPLDRFPVQTFVVEEDPVLIREAVGRELARGGQV 836 Query: 813 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 Y+++N V + + A L ELVPEARIA+ HGQMRE +LE+VM DF ++VLVCTTIIE Sbjct: 837 YFVHNRVFELDRVAGWLQELVPEARIAVAHGQMREDQLEQVMLDFVAGAYDVLVCTTIIE 896 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 TG+DI NT++++ AD GLAQL+QLRGRVGRS+ AYA+ + + A+KRL A Sbjct: 897 TGLDITNVNTLVVKEADQLGLAQLYQLRGRVGRSNRLAYAYFTFRRDRLLGEAAEKRLRA 956 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP 992 I D G+GF LA DLEIRGAG LLG EQ G++ +GF +Y LLE +V LK P Sbjct: 957 IRDFTDFGSGFRLAKRDLEIRGAGNLLGTEQHGNISVVGFEMYCRLLEESVRELKGEAPP 1016 Query: 993 SLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGL 1052 +T VE+ + + LPDD+IPD ++ FY +A + +++ + EL DRFG Sbjct: 1017 -----EEFETVVEVPVTAFLPDDYIPDPEQKVQFYHLLARVQQVEDVDHVAEELRDRFGS 1071 Query: 1053 LPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYR 1112 P P LL IAR+R A+ I+ + G + E + ++ + L+ + + P R Sbjct: 1072 PPAPVENLLAIARIRAMAKGFRIKSINGQGRSCRFILGEAHPLDGSTLVAVSEHYPGRLR 1131 Query: 1113 L-DGPTRLKFIQDLSERKT---RIEWVRQFMRELEEN 1145 + + + L I + F+ ++ + Sbjct: 1132 FKEEESGFEIWLKLESPGDGPRVIREIESFLAKISQK 1168 >UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F915_ACIC5 Length = 1189 Score = 1111 bits (2873), Expect = 0.0, Method: Composition-based stats. Identities = 436/1172 (37%), Positives = 670/1172 (57%), Gaps = 44/1172 (3%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ- 61 EQ + L + G +R + LT A + + +A PVVL+ D + A +H + Sbjct: 20 EQAQRHLSLSRGRRR-VSGLTSTARSLYIPLLARAAKVPVVLLVADNKAADAMHLALRAG 78 Query: 62 ------FTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 + V+ L + LP+++ SPH ++ R +TL+++ T ++I PV Sbjct: 79 CELTGAIAAERVLKLPAHDVLPFENMSPHPEVQEQRATTLWKIATGDAAIVIAPVEAAAM 138 Query: 116 RVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175 ++ P F G A V+++G+ + D L T L S GY VD V G+Y RG +LD++ Sbjct: 139 KLFPAPFYGGLAQVLRRGEEIDVDMLLTHLASVGYEQVDVVEMPGQYTRRGGILDVYSPE 198 Query: 176 SELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWR-DT 234 ++ P R++FF DEI+++R FD +SQR+ ++ LLP E P + + ++ Sbjct: 199 ADRPVRMEFFGDEIETMRKFDPESQRSQSPLDEARLLPLTETPVTERLLAAVHARLSGAR 258 Query: 235 FEVKRDPEHIYQQVSKG--TLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN-TGDLETS 291 FE + E + + V+ G ++ G E++ + + L FP L V G ++ Sbjct: 259 FETNDEGEMVAEMVAAGGVSVFPGWEFFAGVAGANK--TLLDLFPRCVLFVEEPGMIKNQ 316 Query: 292 AERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL----KTEHLPTK 347 ER+ R + + L+ P+ ++LR + L ++ K+ P + + + L Sbjct: 317 VERWWNKVEQRHDRSSIGT---LIRPEDIYLRPELLEAQRKSHPGLDIDQLGAVDVLEDD 373 Query: 348 AANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKI 407 + F P L A ++ ++ ++ + ++ + ++G E L LL ++ Sbjct: 374 ETLGEIAFSSRPTLRFHGSIPAFVEQIKNLMQQ-ETRMLLAAPNQGEVERLATLLREYEL 432 Query: 408 APQRIMR---------LDEASDRGRYL-----MIGAAEHGFVDTVRNLALICESDLLGER 453 + R DEAS G L + G NL + +DL E Sbjct: 433 PYRLGSRVMHTGSETMYDEASHLGGDLRTPIILRAPIATGVSLPDANLVVFGANDLNDEA 492 Query: 454 VARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTY 513 R +R++ I + +L +G VVH+EHG+ RY G+ + G T E+++L + Sbjct: 493 DVTARPAARKS-KTAAFISDFRDLAVGDYVVHVEHGIARYLGLKEIAQDGTTLEFMILEF 551 Query: 514 ANDAKLYVPVSSLHLISRYAGGAEENAP-LHKLGGDAWSRARQKAAEKVRDVAAELLDIY 572 A +AKLYVP++ L LI +Y AP LH+LG W++ + + + ++D+A ELL +Y Sbjct: 552 AEEAKLYVPLTRLDLIQKYRSTESGPAPVLHRLGTQQWAKTKARVKKAMQDMADELLKLY 611 Query: 573 AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632 AQR A +G A+ D E + F DSF + T DQ AI + DM MDRL+CGDVG+ Sbjct: 612 AQRKAAQGHAYSADNEFQREFEDSFDYNETDDQLSAIADIKRDMESTTPMDRLLCGDVGY 671 Query: 633 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ 692 GKTEVAMRAAF AV + KQVAVL PTT+L+ QHY+ F+ RF +P+ IEM+SRFR+AKEQ Sbjct: 672 GKTEVAMRAAFKAVQDGKQVAVLTPTTVLSFQHYETFKKRFRQFPIHIEMLSRFRTAKEQ 731 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 I+ V G+IDILIGTH+LL D+KF D+GLLIVDEE RFGVRHKER+K +RA +D+L Sbjct: 732 KLIVERVEAGEIDILIGTHRLLSKDLKFHDIGLLIVDEEQRFGVRHKERLKQLRAQLDVL 791 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 T++ATPIPRTL+M++ G+RD+S+I TPP R+A++T V ++D +VR A+ E+ RGGQ+ Sbjct: 792 TMSATPIPRTLHMSLVGLRDMSVIETPPKDRMAIQTIVAKFDEKLVRSAVEVELERGGQI 851 Query: 813 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 Y+++N VE I + A ++ ELVP ARI +GHGQM E ELE+VM F + ++VLV T+IIE Sbjct: 852 YFVHNRVETIYEIAAKIQELVPHARITVGHGQMGEAELEKVMLAFMNHEYDVLVATSIIE 911 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 G+DIP ANTI+I RAD GL++L+QLRGRVGRS+ +AYA+L+ P + +T A++RL A Sbjct: 912 NGLDIPLANTILINRADRHGLSELYQLRGRVGRSNRRAYAYLMIPPEQELTEIARRRLAA 971 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP 992 + DLGAGF +A DLE+RGAG +LG EQSG +E +GF LY +LE AV+ +K Sbjct: 972 LKEFSDLGAGFKIAALDLELRGAGNMLGGEQSGHIEAVGFELYTTMLEEAVNKMKGQ--- 1028 Query: 993 SLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGL 1052 E + T++ L +P + D +IP+ N RL YK IA A+ E + I+ EL+DR+G Sbjct: 1029 --ETVERPVTQLSLGIPLRIDDSYIPEENQRLRMYKHIAGAQDERAIAGIRAELVDRYGA 1086 Query: 1053 LPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQH-Y 1111 LP R LLD A LR + +G+ +++ ++F EK ++P L+ L+ K + Sbjct: 1087 LPTGVRHLLDAAELRIACEHMGVAQVDRKRDQIHLKFTEKASIDPGILMKLVSKNAKRGA 1146 Query: 1112 RLDGPTRLKFIQDLSERKTRIEWVRQFMRELE 1143 + L+F ++ ++ +R + +L Sbjct: 1147 QFTPQGVLRFPLSGTDPESIFTELRVLLDDLA 1178 >UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A0K9_DESOH Length = 1174 Score = 1108 bits (2867), Expect = 0.0, Method: Composition-based stats. Identities = 403/1166 (34%), Positives = 614/1166 (52%), Gaps = 40/1166 (3%) Query: 9 LPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ--- 65 L AGE G G A A +V+ I + PV+++ + A R ++ F Sbjct: 17 LETGAGEVVCAGVGKG-ADAFMVSRIGQTLNVPVLVVTASAREAQRFTEDARFFQPADAR 75 Query: 66 -MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM-QRGVLIVPVNTLMQRVCPHSFL 123 V + +PY + H + R+ LY + VL++ V+ L+Q+ P L Sbjct: 76 AEVALFPSYTVMPYRPVAYHNRTAAERIQLLYGMSEGLAPAVLVLAVDALLQKTIPPGDL 135 Query: 124 HGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLD 183 A + +G+ L AL +L + GY V E G+++ RG ++DLF E P R+D Sbjct: 136 CEFAQTVSEGESLDPTALAEKLVAGGYTRTAIVEEPGDFSIRGGIVDLFSPFHEAPARID 195 Query: 184 FFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP-- 241 F D ++S+ F +QR I LLPA E K I + + P Sbjct: 196 LFGDTVESIHFFSPVTQRRGRPTSGITLLPARETVLAKDRIGRLIAAVKKRSAELNLPVS 255 Query: 242 --EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQA 297 I ++ +GT G+E PL + E LF Y P TLLV + G + AE Sbjct: 256 VSRDIIDRMEQGTDTEGMESLMPLVY-ETPATLFDYLPGKTLLVMVDPGMIAEKAENHGR 314 Query: 298 DTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQ---LKTEHLPTKAANANL- 353 +E + R +PP +L+L + E P + L P N + Sbjct: 315 LATELYETAR-EEGRWCVPPDALYLDWQAVQKEAFKKPLLSFPVLPVSATPEDGDNTPVV 373 Query: 354 --------GFQKLPDLAVQAQQKAPLDALRKFLETFDGPV---VFSVESEGRREALGELL 402 L L L ++E G V + + + + L Sbjct: 374 ETAGVTDNSAVTLMLRTQPRDTDTVLTPLLSWIEENRGLGCVSVIACGGRAQVDRMAYFL 433 Query: 403 ARIKIAPQRIMRLDEASDRG--RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQD 460 ++ + + L+ G GF LA+I ++++ G R Sbjct: 434 TSHRVPHESLDAFSSMGRGSDTVCLVSGQLSAGFRFAAEGLAVITDTEIFGRVRHRSSAG 493 Query: 461 SRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLY 520 + + + +L L G VVH++HG+GRY G+ + GI ++L+L+Y + +LY Sbjct: 494 KKGARD---VYLDLETLKQGDLVVHVDHGIGRYEGIRKVTVEGIANDFLLLSYRDGDRLY 550 Query: 521 VPVSSLHLISRYAGGAEENAPL-HKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 + V + + +Y G + APL K+G W R + KA ++ +A ELLD+YA+R ++ Sbjct: 551 LSVDRMDMARKYVGADDAEAPLLDKMGAKTWGRVKAKARKEAEKIAKELLDLYARRRVQQ 610 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 G F + + F F FE T DQ + IN VLSDM MDRLVCGDVG+GKTEVAM Sbjct: 611 GHGFHPPGQWFSDFEAGFDFEETDDQLKVINEVLSDMASSTPMDRLVCGDVGYGKTEVAM 670 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 R++F+ V + QVAVLVPTT+LA+QH+ F RFA +P I +SRF++ Q QI+A++ Sbjct: 671 RSSFMCVCDGFQVAVLVPTTVLAEQHFATFSRRFAGYPFNIACLSRFKTPARQKQIVADL 730 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 EG++DI+IGTH+LL DV FK LGL+I+DEE RFGV+HKE +K MR VD+L+LTATPI Sbjct: 731 KEGRVDIVIGTHRLLSKDVAFKQLGLVILDEEQRFGVKHKETLKKMRTTVDVLSLTATPI 790 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTL+M++SGMRD+S+I TPP R A+KT++ E+D ++R AI +E+ RGGQ+Y+++N++ Sbjct: 791 PRTLHMSLSGMRDISVITTPPEHRKAIKTYISEFDDAIIRTAIRKELERGGQIYFVHNNI 850 Query: 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 I A+ L +LVPE R+ I HG++ + LE M F ++ ++LVCT IIE+GIDIP+ Sbjct: 851 HKIAFIADHLKKLVPEVRLGIVHGRLDQNTLETCMMQFVNREIDMLVCTRIIESGIDIPS 910 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 ANTI I RAD FGLAQ++QLRGRVGRS QAYA+L P A+ DA+KRL+ + DL Sbjct: 911 ANTIFINRADMFGLAQIYQLRGRVGRSDEQAYAYLFIPRESALGKDARKRLKVLMEHSDL 970 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 G+GF +A +DL+IRG G LG QSG + +G+ ++++L+E AV LK EP E L Sbjct: 971 GSGFQIAMNDLKIRGGGAALGVSQSGHITAVGYDMFLQLMEQAVAELKG--EPVTETL-- 1026 Query: 1000 QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPART 1059 E+ + + S L + +I D++ R++ Y+R++ E+ +K EL DRFG LP A Sbjct: 1027 -NPEINIPVSSFLSEAYISDIDQRMAIYRRLSRVTETREITAVKTELEDRFGPLPAEAEN 1085 Query: 1060 LLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRL 1119 LL L+ A +G+++L+ + + F++ + A + L ++ P ++ P + Sbjct: 1086 LLLKIMLKTMAAGMGVKRLDLADTQMHLRFSDDRLPDAAAVDVLARENPVTVKIVPPDGV 1145 Query: 1120 KFIQDLSERKTRIEWVRQFMRELEEN 1145 + + I + ++ L Sbjct: 1146 FITFTGKKGRGAIGAAKNILKALAGR 1171 >UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWH1_9CLOT Length = 1200 Score = 1108 bits (2865), Expect = 0.0, Method: Composition-based stats. Identities = 389/1163 (33%), Positives = 614/1163 (52%), Gaps = 59/1163 (5%) Query: 8 TLPVKAGEQRLLGELTGAACATLVAEIAERHAGPV-VLIAPDMQNALRLHDEISQFTDQM 66 L G ++ G L + L+ E+ E A +++ D A ++D++ FT + Sbjct: 17 ALKSGKGPLQVTGTL-DSQKVHLMYELGEASAFSWKLVVTYDDTRAKEIYDDLRSFTSR- 74 Query: 67 VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGH 126 V + L Y + + R++ L +L + GV++ ++ LM + P +L Sbjct: 75 VWLYPAKDLLFYSADIHGNLMARQRIAVLRRLMEDREGVVVTTMDGLMDHLLPLKYLREQ 134 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 ++ ++ GQ + D + +L + GY V QV G+++ RG ++D+FP+ E+P R++ +D Sbjct: 135 SITVESGQVIDLDVWKERLIAMGYERVAQVDGMGQFSIRGGIVDIFPLTEEVPVRIELWD 194 Query: 187 DEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAI-------ELFRSQWRDTFEVKR 239 DE+DS+R FD++SQR++E++E I + PA E + E + + Sbjct: 195 DEVDSIRTFDLESQRSVEQLENITIYPAAEVVLSADQLAAGIRRLEKEEKTYEKALREQH 254 Query: 240 DPEH----------IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLE 289 PE + + +G G++ + F + + YFP ++ + Sbjct: 255 KPEEAHRIHTIIGELRSGLDEGWRIGGLDAYIRYFCPDTV-SFLEYFPQGESVIFLDEPA 313 Query: 290 TSAERFQADTLARFENRGVDPMRPLLPPQ--SLWLRVDELFSELKNWPRVQLKT--EHLP 345 E+ + L E+ + L P L E+ + ++ V L + LP Sbjct: 314 RLKEKGETVELEFRESMVHRLEKGYLLPGQTELLYPAAEILARMQKPYAVMLTGLDQKLP 373 Query: 346 TKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARI 405 N + Q + + L ++ + V+ S R L L Sbjct: 374 GMKVNQKFSIDVKNVNSYQNSFEILIKDLTRWKKE-GYRVILLSASRTRASRLASDLREY 432 Query: 406 KI---------------------------APQRIMRLDEASDRGRYLMIGAAEHGFVDTV 438 + + + + G GF + Sbjct: 433 DLRAYCPDGREGESGNAGGEGAGSADTGNPGAVNTSVRKVRPGEILVTYGNLHRGFEYPL 492 Query: 439 RNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTT 498 I E D+ G V ++R+ ++T I++ EL +G VVH EHG+G Y G+ Sbjct: 493 LKFVFITEGDMFG--VEKKRKRRKKTNYQGKAIQSFTELSVGDYVVHEEHGLGIYKGIEK 550 Query: 499 LEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAA 558 +E + +Y+ + Y + LY+P + L I +YAG + L+KLGG W++ + + Sbjct: 551 VERDKVIKDYIKIEYGDGGNLYLPATRLESIQKYAGAEAKKPKLNKLGGTEWNKTKTRVR 610 Query: 559 EKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQ 618 V+++A +L+ +YA R K GF + D + F + FP++ T DQ AI+AV DM Sbjct: 611 GAVQEIARDLVKLYAARQEKAGFQYGTDTVWQREFEELFPYDETDDQMDAIDAVKKDMES 670 Query: 619 PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPV 678 MDRL+CGDVG+GKTEVA+RAAF AV + KQV LVPTT+LAQQHY+ F R ++PV Sbjct: 671 RRIMDRLICGDVGYGKTEVALRAAFKAVQDSKQVVYLVPTTILAQQHYNTFVQRMKDFPV 730 Query: 679 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH 738 R++M+SRF + Q + L ++ +G +DI+IGTH++L D++FKDLGLLI+DEE RFGV H Sbjct: 731 RVDMLSRFCTPARQKRTLEDLRKGMVDIVIGTHRVLSKDMQFKDLGLLIIDEEQRFGVAH 790 Query: 739 KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVV 798 KE+IK ++ NVD+LTLTATPIPRTL+M+++G+RD+S++ PP R ++T+V EY+ +V Sbjct: 791 KEKIKHLKENVDVLTLTATPIPRTLHMSLAGIRDMSVLEEPPVDRTPIQTYVMEYNEEMV 850 Query: 799 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 858 REAI RE+ R GQVYY+YN V +I + A R+ LVP+A + HGQMRE ELER+M DF Sbjct: 851 REAINRELARNGQVYYVYNRVTDIDEVAGRVQALVPDAVVTFAHGQMREHELERIMADFI 910 Query: 859 HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 + +VLV TTIIETG+DI ANT+II AD GL+QL+QLRGRVGRS+ +YA+L+ Sbjct: 911 NGEIDVLVSTTIIETGLDISNANTMIIHDADRMGLSQLYQLRGRVGRSNRTSYAFLMYKR 970 Query: 919 PKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMEL 978 K + +A+KRL+AI +LG+G +A DLEIRGAG +LG EQ G ME +G+ LY ++ Sbjct: 971 DKLLREEAEKRLQAIREFTELGSGIKIAMRDLEIRGAGNVLGAEQHGHMEAVGYDLYCKM 1030 Query: 979 LENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENE 1038 L AV ALK S T VE + + +P +I + +L YKRI++ +TE E Sbjct: 1031 LNQAVLALKGETLEED----SYDTVVECDIDAYIPGRYIKNEYQKLDIYKRISAIETEEE 1086 Query: 1039 LEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPA 1098 +++ EL+DRFG +P LL IA +R A + + ++ N + + +K + Sbjct: 1087 YMDMQDELMDRFGDIPRSVENLLKIASIRALAHQAYVTEVVINRQEVRLTMYQKAKLQVD 1146 Query: 1099 WLIGLLQKQPQHYRLDGPTRLKF 1121 + +++ +L F Sbjct: 1147 KIPDMVRSYKGDLKLVPGDVPSF 1169 >UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lactobacillaceae RepID=C8P4L0_9LACO Length = 1185 Score = 1105 bits (2859), Expect = 0.0, Method: Composition-based stats. Identities = 398/1164 (34%), Positives = 632/1164 (54%), Gaps = 39/1164 (3%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS- 60 PE + + G ++L+ ++G+A L+A + E+ PV+ + + L D+++ Sbjct: 18 PEFKQLLQQRQPGTRQLVTGISGSARTLLLAGLVEQSQQPVLAVVDSLSQVEELADDLAN 77 Query: 61 QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 V E L + + + R+ L L + + V++ V L + V Sbjct: 78 LLPPDRVYQFPVEEVLAAEVATSSPNYRLQRVQALDALDSQRPAVVVTSVAGLRRNVFAP 137 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 F L + G L + R QL + GY+ V+ G++A RG+++D++ + ++ P Sbjct: 138 EFFAQATLKVAVGGELDPERARQQLSAMGYQLQKMVLRPGDFAIRGSIIDVYALNTDNPV 197 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF----- 235 R+D FD E+DSLR FD +Q+++ E + +LPA + A ++ + F Sbjct: 198 RIDLFDTEVDSLRYFDASTQKSVGNAEEVEILPATDLILPPAEFSRVQAAVKQQFDQLKA 257 Query: 236 EVKRDPEHIYQQVSKGTLP---AGIEYWQP---LFFSEPLPP----LFSYFPANT--LLV 283 E++ I QQV+ P A E P L F + + P L Y A+ L Sbjct: 258 ELQDGDADILQQVNNRFTPLLTALQERRLPNEMLEFGDLVYPTRHSLLDYLAADGALYLD 317 Query: 284 NTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEH 343 + L+ A + + E + L+ SL +E +K QL Sbjct: 318 DYSRLKDRAGKLADEDQGWLEEKV--KYHQLVSVPSL---SNEFAKLVKADQHAQLFGAL 372 Query: 344 LPTKAANANLG----FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALG 399 A N P Q L+++ + ++ + RR+ + Sbjct: 373 FKKGAGNLRFSQLVEITSRPMQRFFGQMPLLKTELQRWTDQ-GQTIIIMADGNERRQQIA 431 Query: 400 ELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQ 459 L I D+ L+ + +GF L +I E +L + ++R+ Sbjct: 432 RTLTDFGIPVIET-AADQLQVNTVQLVAASLNNGFEMPAAGLVVITEGELF--KQVKKRR 488 Query: 460 DSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKL 519 + + I++ +L G VVH+ HG+G ++G+ T+E G+ +Y+++ Y N+A++ Sbjct: 489 HRAQKLANAERIKSYTDLKPGDYVVHVNHGIGIFSGIKTMEVDGVHQDYMIINYRNNAQI 548 Query: 520 YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 +VPV+ L+L+ +Y + +++LGG+ W++ +++ A KV D+A EL+D+YA+R A + Sbjct: 549 FVPVTQLNLVQKYVSAESKTPRINRLGGNEWAKTKRRVASKVEDIADELVDLYAKREAAK 608 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 G+AF D F +FP+ T DQ ++I V DM +P MDRL+ GDVG+GKTEVAM Sbjct: 609 GYAFPADDYLQAQFDANFPYTETRDQLRSIKEVKRDMEKPRPMDRLLVGDVGYGKTEVAM 668 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 RA F AV KQVA LVPTT+LAQQH+D RFA +PV+I ++SRF++ +E + A + Sbjct: 669 RAIFKAVTGGKQVAFLVPTTVLAQQHFDTLSKRFAGFPVKIALMSRFKTNQELKETDAGL 728 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 A G IDI++GTH++L DV+F+DLGL+IVDEE RFGV+HKER+K ++ NVD+LTLTATPI Sbjct: 729 AAGSIDIVVGTHRILSKDVQFRDLGLVIVDEEQRFGVKHKERLKELKNNVDVLTLTATPI 788 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTLNM+M G+RDLS++ TPPA R ++T+V E + +R+ I RE+ RGGQVYYL+N V Sbjct: 789 PRTLNMSMLGVRDLSVLETPPAGRFPIQTYVMEQNGGAIRDGITRELNRGGQVYYLHNRV 848 Query: 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 +I++ +L LVP+ARI HG+M E ELE V+ DF ++VLV T+IIETG+DIP Sbjct: 849 SDIEETVMKLQALVPDARIGYIHGKMGENELETVLYDFIQGNYDVLVTTSIIETGVDIPN 908 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 NT+ +E ADH GLAQL+Q+RGR+GRS+ AYA+ + K +T +KRL AI +L Sbjct: 909 VNTLFVENADHLGLAQLYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTEL 968 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 G+GF +A DL IRGAG +LG++Q G ++++G+ LY +L AV + + + Sbjct: 969 GSGFKIAMRDLAIRGAGNILGKQQHGFIDSVGYDLYSSMLNEAVARKQGKKRAAR----- 1023 Query: 1000 QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPART 1059 EVEL + + LPD ++ D ++ YK I A+T++EL EI+ +L+DRFG P Sbjct: 1024 ADAEVELGVEAYLPDSYVNDQRQKIELYKAIRQAQTDDELLEIQGDLLDRFGDYPAAVGN 1083 Query: 1060 LLDIARLRQQAQKLGIRKLEGNEKGGVIEFAE--KNHVNPAWLIGLLQKQPQHYRL-DGP 1116 LL I++L+Q A + I +++ +I F + V +I LL K L + Sbjct: 1084 LLLISKLKQHADEAMIEQIKRQRDSILITFTPAGSHLVKAPQIIKLLAKTKFKATLGEHE 1143 Query: 1117 TRLKFIQDLSERKTRIEWVRQFMR 1140 +L + + T+ +W+ Q + Sbjct: 1144 GQLTVRLVIQPKMTQTDWLNQLLD 1167 >UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Desulfitobacterium hafniense RepID=B8FZB7_DESHD Length = 1197 Score = 1104 bits (2855), Expect = 0.0, Method: Composition-based stats. Identities = 395/1150 (34%), Positives = 630/1150 (54%), Gaps = 36/1150 (3%) Query: 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMNLADWE 74 +++ LTG+ A++ ++ P ++I + A + +++ + + V+ E Sbjct: 46 PQMIYNLTGSQKPAFAAQLIQK-GKPGLIITYSEELAQKWVNDLRSWLPGEDVLYFPSSE 104 Query: 75 TLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 LP++ ++ R+ L +L + ++VP + QR + L +K+G Sbjct: 105 WLPFEVLGKSRETTIERIRVLNRLAQDNQCTVVVPALAVNQRSFSRRRWQEYILELKEGT 164 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 194 L +L +AGY +D V G++A RG ++D+ P+ E P R++FFDDE+DS+RV Sbjct: 165 SYDLKDLAQKLSTAGYERLDVVDGKGQFAIRGGIMDIAPLDGE-PLRVEFFDDEVDSIRV 223 Query: 195 FDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF-----------------EV 237 FD+++Q++ E ++++ + PA E +E + R +V Sbjct: 224 FDLETQKSTETLKSVKIPPALEVVIRPEELEKLGWEVRAQARKQAGRLNRSGRSDVAEQV 283 Query: 238 KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAE-RFQ 296 + + I +++ G + I + L EPL P FS + ++ L + FQ Sbjct: 284 MKQAQRIEERLKTGRVDESIYPYLSLL-EEPLEPFFSLLSQDHYVILDEPLRLKEQLEFQ 342 Query: 297 ADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEH--LPTKAANANLG 354 + + P+ ++ ++ + P V + T +P A Sbjct: 343 QKERLEEYTQALAKGEEFYSPEDQFVSYEQFLRYGEKHPFVLISTLPREIPGVAPKRIFN 402 Query: 355 FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMR 414 P + +D + + ++ +F + E E + + L ++ Sbjct: 403 LNARPLTGFMGKTGILVDEIEHWQKSGHIVNLFVGDEEH-AERMLQGLRDRGALAKKHEL 461 Query: 415 LDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNL 474 + + G Y+ + + GF + L ++ E+++ +R + ++ Sbjct: 462 HEPVQEGGVYVYSSSLDQGFELPLSKLIVLSEAEIY-KRERKAAVKRKKAPEKTGQRLQF 520 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG 534 A+L G VVH+ HG+G++ G+ + GG+ +Y + YA KLYVP+ L+ + +Y G Sbjct: 521 ADLKPGDFVVHVHHGIGQFMGIERIAVGGVEKDYFSVKYAGQDKLYVPLDQLNFLQKYLG 580 Query: 535 GAEEN-APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 E L+KLGG W + + KA ++++A +L+ +YAQR A +G+AF D Q F Sbjct: 581 SDAETLPKLYKLGGSEWKKVKAKAKSAIKEMAFDLVKLYAQREATKGYAFSPDNVWQQEF 640 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 + FP++ TPDQ Q I V DM + MDRL+CGDVG+GKTEVA+RAAF AV + KQVA Sbjct: 641 EEKFPYQETPDQMQCIVEVKQDMMRQRPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVA 700 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 VLVPTT+LAQQH++ F++RF +PV I+M+SRFRSAKEQ IL + EG IDI++GTHKL Sbjct: 701 VLVPTTILAQQHFNTFQERFMGYPVSIQMLSRFRSAKEQKLILQGLKEGSIDIVVGTHKL 760 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 + +KFKDLGLLIVDEE RFGV HKE++K ++ANVD+LTL+ATPIPRTL+M++ G+RDL Sbjct: 761 VSDSIKFKDLGLLIVDEEQRFGVAHKEKLKTLKANVDVLTLSATPIPRTLHMSLVGVRDL 820 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 SII TPP R V+T+V E+ VVREAI REI RGGQV++++N VE++++ L++LV Sbjct: 821 SIIETPPEDRFPVQTYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDMEQVVHFLSQLV 880 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 PEAR I HGQM E+ELE+ M F +VLVCTTIIETG+D+P NT+II+ AD GL Sbjct: 881 PEARYGIAHGQMSEKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTLIIDEADRLGL 940 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 QL+QLRGRVGRS+ +AY++ L K +T A+KRL AI + G+G +A DLEIR Sbjct: 941 GQLYQLRGRVGRSNRRAYSYFLYKPQKVLTEVAEKRLAAIREFTEFGSGLKIAMRDLEIR 1000 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLP 1013 GAG L+G +Q G + +GF LY ++L+ AV LK + +T +E+++ + LP Sbjct: 1001 GAGNLIGAQQHGHLAALGFELYSQMLKEAVQELKGE-----QVEEKIETSIEVQVDAYLP 1055 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKL 1073 D +I + + + Y+R+ + E +L + ELIDRFG P LL I R++ A + Sbjct: 1056 DIYIGERQLKAALYQRMVAIDNEEDLSMMIDELIDRFGTPPREVENLLKIVRIKWMASGM 1115 Query: 1074 GIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRL--DGPTRLKFIQDLSE--RK 1129 I +++ ++ V FA ++ L+ + + P G L+ L ++ Sbjct: 1116 KIEQIQQLKQQMVFRFAADPGISGEMLMTMATQSPYPVSFGTTGNGNLEIKVRLRSVVQE 1175 Query: 1130 TRIEWVRQFM 1139 +E + + + Sbjct: 1176 ELLEAIHKVL 1185 >UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=Lactobacillus RepID=C7TMD0_LACRL Length = 1175 Score = 1103 bits (2854), Expect = 0.0, Method: Composition-based stats. Identities = 385/1159 (33%), Positives = 618/1159 (53%), Gaps = 37/1159 (3%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 PE ++ G L+ L+G+A + ++ ++++ + +A L ++S Sbjct: 11 PELSALWPKLETGRH-LVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHADELAADLSS 69 Query: 62 FTDQM-VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 V + + L + + + R++ L + + Q G+++ + + + Sbjct: 70 LLGDALVYDFPVEDVLAAEVAVSSPETRNDRINALTFIQSGQPGIIVTSLAGYKRILPAP 129 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 + LV+ L + QL + GYR V G++A RG ++D++P+ + P Sbjct: 130 AAWAASELVVDMDSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDIYPLNQDDPI 189 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R++ FD EIDS+R FD+ +QR+L++++ I + PA + + ++ + Sbjct: 190 RIELFDTEIDSIRSFDIATQRSLKKLDQIVIAPATDMIASDQVLTDAGARIGKQATAYKA 249 Query: 241 PEHIY--------------QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLL--VN 284 QQ+ P + + P + E + Y + L+ + Sbjct: 250 KVKDAAAKQAITDGLLTTSQQLQALERPENLALYAPELYPE-HHRITDYLAGDALVAFDD 308 Query: 285 TGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHL 344 L S DT + + P + ++ PR+ L Sbjct: 309 YSRLLDSDTNLVQDTAEWYSQLQEEGRLLPKTPNPTI----QALNQRDRHPRLYLSLFQK 364 Query: 345 PTKAANANL--GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELL 402 + +Q ++++ VVF V + R + L L Sbjct: 365 GMGQLRLDSLTNVPSRNVQQFFSQMPLLKTETDRWVKQ-KQTVVFLVSDKNRLDKLSATL 423 Query: 403 ARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR 462 +I+ + ++ L G+ ++GF L ++ E +L R R + Sbjct: 424 HDFEIS-NVVTEPNQLLSGKVQLTDGSLKNGFELPDLKLVVVTEHELFNARQRR--RARH 480 Query: 463 RTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVP 522 +T+ +R+ EL G VVH+ HG+G+Y GM TLE G+ +Y+ + Y N+ KL++P Sbjct: 481 QTLANTERLRSYNELKPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNNDKLFIP 540 Query: 523 VSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582 V L+L+ +Y + ++KLGG W + ++K A ++ D+A EL+D+YA+R A++G+A Sbjct: 541 VDQLNLVQKYVSADGKTPNVNKLGGTEWQKTKRKVAARIEDIADELIDLYAKREAEKGYA 600 Query: 583 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 642 F D + Q F D FP+ TPDQ ++ + DM +P MDRL+ GDVGFGKTEVA+RAA Sbjct: 601 FGPDDDLQQKFEDEFPYPETPDQLRSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAA 660 Query: 643 FLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 702 F AVD KQVA+LVPTT+LAQQH+D +DRFA++PV+I ++SRF++ + + + G Sbjct: 661 FKAVDYGKQVAILVPTTILAQQHFDTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNG 720 Query: 703 KIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRT 762 IDI++GTH+LL DV F+DLGLL++DEE RFGV+HKERIK +++NVD+LTLTATPIPRT Sbjct: 721 TIDIVVGTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRT 780 Query: 763 LNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENI 822 LNM+M G+RDLS+I TPP R ++TFV E + V+REAI RE+ RGGQV+YL+N VE++ Sbjct: 781 LNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDM 840 Query: 823 QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 ++ +L ELVP+A I HGQM E +LE V+ DF H ++VLV TTIIETG+D+P ANT Sbjct: 841 ERTVSQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANT 900 Query: 883 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAG 942 +IIE ADH+GL+QL+QLRGR+GRS AYA+ + K + A+KRL+AI +LG+G Sbjct: 901 LIIENADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSG 960 Query: 943 FALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQT 1002 F +A DL IRGAG LLG++Q G ++++G+ LY ++L+ AV+ + L+ + Sbjct: 961 FKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNKRRG-----LKTVQKTDA 1015 Query: 1003 EVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLD 1062 E++L + + LP D++ D ++ YKRI A ++ EI +LIDRFG P P LL Sbjct: 1016 EIDLGLEAYLPTDYVADSRQKIELYKRIREADSDEAETEISEDLIDRFGDYPQPVTNLLA 1075 Query: 1063 IARLRQQAQKLGIRKLEGNEKGGVIEFAEK--NHVNPAWLIGLLQKQPQHYRLD-GPTRL 1119 IA L++ A + ++ N++ + + + L ++ +L Sbjct: 1076 IAHLKRFADLAWVDHVQKNDQKMTVVLTPQATAKAQGEPIFKALAATTLKAQVAIADGKL 1135 Query: 1120 KFIQDLSERKTRIEWVRQF 1138 + EW+ Q Sbjct: 1136 TVTLAVPATMKEDEWLGQL 1154 >UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SUU5_9FIRM Length = 1186 Score = 1103 bits (2853), Expect = 0.0, Method: Composition-based stats. Identities = 381/1134 (33%), Positives = 625/1134 (55%), Gaps = 32/1134 (2%) Query: 20 GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYD 79 + G L+ +++ + +++ + A +L+ ++ F + V + L + Sbjct: 33 SSMEGTDRVFLMNAVSDESSVK-LVLTYSDKRAEQLYSDLR-FYSRDVYMYPAKDILFFS 90 Query: 80 SFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRD 139 + I R+ L +L + + ++ V+ L ++ S+++ + + + QRL D Sbjct: 91 ADVHGNAITRKRMDVLRRLVSGEPCTIVATVDALFDKIPALSYMNKYIINICTAQRLDVD 150 Query: 140 ALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDS 199 LR +L + GY VD V E G++A RG ++D++P+ E PYR+D +DDE+D+++ FD +S Sbjct: 151 DLRQKLSALGYDKVDNVEEPGQFAVRGGIIDIYPLTEECPYRIDMWDDEVDTIKTFDAES 210 Query: 200 QRTLEEVEAINLLPAHEFPTD-----------KAAIELFRSQWRDTFE------VKRDPE 242 QR++E V++I + PA E +A ++ + + +++F +KR+ Sbjct: 211 QRSIETVDSIVIYPAGEIVLSQDRINRGIRKIEAELKPYAQKLKESFHTEAYARIKREVA 270 Query: 243 HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLAR 302 + +Q+++ + G++ + F+S+ + L P ++ ++ + S +T R Sbjct: 271 ELKEQLTEFSAVYGVDSYVDYFYSDTV-SLIDCLPDDSYVLIDETRKVSDRAATDETGFR 329 Query: 303 FENRGVDPMRPLLPPQS-LWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDL 361 +LP Q + D++ + K + V + + + + + Sbjct: 330 SSMVHRLEGGYVLPGQMNVMYSYDDVIDKAKKYNVVGF--DAFDGRDDRISYAHKTEIEC 387 Query: 362 AVQAQQKAPLDALRKFLETFDG---PVVFSVESEGRREALGELLARIKIAPQRIMRLDEA 418 + D L + ++ V+F S + + + L I + D+ Sbjct: 388 HEVHSYRNSFDTLVADIRSWKKNKNSVLFVSPSSVGAKRMVDNLMDADIICHYLSDADKV 447 Query: 419 -SDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAEL 477 + R M G GF+ +L ++ E D+ R + ++ ++ +I++ +++ Sbjct: 448 LTPREIAAMAGRLRSGFMIPAMHLVVVSEGDVFSSRSSSGKRTQKKLPYSGEIIKSFSDV 507 Query: 478 HIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAE 537 +G VVH ++G+G Y G+ +E G +YL++ YA KLYV S I +Y Sbjct: 508 SVGDYVVHEKYGIGVYKGIEKIEVDGALKDYLVIEYAEGGKLYVLASETDRIQKYRSKEG 567 Query: 538 ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSF 597 +++LGG+ W + R + V +VA L+ +YA+R +KEG A+ D E + F ++F Sbjct: 568 RPPKINRLGGNEWQKVRNRVKGHVDEVAEHLVKLYAERQSKEGHAYSPDSEWQKEFEETF 627 Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 P++ T DQ +AI V +DM MDRLVCGDVGFGKTEVA+RAAF AV + +QVA LVP Sbjct: 628 PYKETDDQLRAIADVKADMESSRIMDRLVCGDVGFGKTEVAIRAAFKAVGDSRQVAYLVP 687 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 TT+LA+QHY+ F +R ++PV I ++ RF + KE L E+ EGK+DI+IGTH+LL D Sbjct: 688 TTILAEQHYETFTERMKDYPVVIRLLCRFCTQKEIKNTLRELKEGKVDIVIGTHRLLSKD 747 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 V+FK+LGLLI+DEE RFGV HKE+IK M+ NVD+LTLTATPIPRTL+M++ G+RD+S++ Sbjct: 748 VEFKNLGLLIIDEEQRFGVNHKEKIKEMKTNVDVLTLTATPIPRTLHMSLVGIRDMSLLE 807 Query: 778 TPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEAR 837 P R ++T+V EYD + REAI RE+ R GQVYY+YN V +I++ + +LVP A Sbjct: 808 EAPVDRRPIQTYVMEYDKELAREAIARELARQGQVYYVYNRVNDIEQFTAEVQKLVPNAN 867 Query: 838 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 897 + HGQM R LE +M F+ + +VLVCTTIIETG+DIP ANTIII A++FGLAQL+ Sbjct: 868 VEFAHGQMDGRTLEDIMYRFNKKEIDVLVCTTIIETGLDIPNANTIIIHDANNFGLAQLY 927 Query: 898 QLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGE 957 QLRGRVGRS A+A++ K ++ A+KRL AI DLG+G ++ DL IRGAG Sbjct: 928 QLRGRVGRSDRSAFAFMFYRRNKVISEVAEKRLRAIKEYTDLGSGVKISKADLNIRGAGS 987 Query: 958 LLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFI 1017 +LGE QSG+ E +G+ LY ++L +AV + +TE+++ + S +P+ ++ Sbjct: 988 VLGESQSGNYEVVGYDLYCKMLNDAVRERRGDT-----VFHDYETEIDIPIDSFIPETYV 1042 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 + +L KRI+ K E+E +I ELIDRFG +PD LLD A LR +A I + Sbjct: 1043 KNDFIKLELCKRISLIKNEDEYNDIIDELIDRFGDIPDETMNLLDAALLRARAYVCYITR 1102 Query: 1078 LEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTR 1131 + + K ++N + L+ + + +F+ LS+ + R Sbjct: 1103 IWYRDGLLRFSMYNKANINVDGIEDLVNNYMGRMKFQMGAKPEFVLKLSKEEKR 1156 >UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=Staphylococcus RepID=MFD_STAS1 Length = 1170 Score = 1103 bits (2852), Expect = 0.0, Method: Composition-based stats. Identities = 391/1166 (33%), Positives = 644/1166 (55%), Gaps = 34/1166 (2%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 ++Y+ V E L+ L+GAA AT++AE ++++ ++ A +L ++ QF Sbjct: 13 KRYQELNEVFGKENVLVTGLSGAAKATIIAEKYLNSEQQLLVVTNNLYQADKLESDLLQF 72 Query: 63 TDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 + + + + + + +S R+ TL L +RG+ IVP+N L + + P Sbjct: 73 VEDSEIYKYPMQDIMTEEFSTQSPQFMSERVRTLTALAQEERGLFIVPLNGLKKWLTPVD 132 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 H L + G + D +L + GYR V GE++ RG ++D++P+ + P R Sbjct: 133 MWKSHQLTLNVGDDIDIDEFLNKLVNMGYRRESVVSHIGEFSLRGGIVDIYPLIGK-PVR 191 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP 241 ++FFD E+DS+R FDV+SQR+ +E +++ A ++ + ++ + + + +E D Sbjct: 192 IEFFDTEVDSIRDFDVESQRSEGNIEHVDITTASDYIITEDVLKHTKHKLKQAYE---DT 248 Query: 242 EHIYQQVSKGTLPAGIEYWQPL---------------FFSEPLPPLFSYFPANTLL-VNT 285 ++ + L E +Q F E + YF + ++ V+ Sbjct: 249 RPKIEKSVRNELKETYESFQLFEAEMFDHQVLRRLVAFMYEQPATIMDYFKEDAIIAVDE 308 Query: 286 GDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPR--VQLKTEH 343 + E + F ++ + + +L+ + + LK + L T Sbjct: 309 YNRIKETETTLVTEIDEFMQNLIESGKGFI--DQSFLQYEGFENLLKPFAVTYFTLFTAT 366 Query: 344 LPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLA 403 +P + N + F P Q ++F++ D +V E+E ++E + +L Sbjct: 367 MPVQL-NEIIKFSCKPVQQFYGQYDIMRSEFQRFIQN-DYTIVVLAETETKKERIQSMLN 424 Query: 404 RIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRR 463 + I + G+ GF L ++ E +L + +++ + Sbjct: 425 EMHIPTFIDTPSRRNEGGSAIITEGSLSEGFELPYMQLVVVTERELF-KSKQKKKPKQHK 483 Query: 464 TINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPV 523 T+ I++ +L +G VVH+ HGVGRY G+ TLE GG+ +Y+ L Y +L+VPV Sbjct: 484 TLTNAEKIKSYQDLKVGDYVVHVHHGVGRYLGVETLEVGGVHKDYIKLQYKGTDQLFVPV 543 Query: 524 SSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAF 583 + + +Y +++ L+KLGG W + + K + V D+A EL+++Y R G+ F Sbjct: 544 DQMDQVQKYVASEDKSPKLNKLGGTEWKKTKAKVQQSVEDMADELIELYKAREMSVGYKF 603 Query: 584 KHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 643 D + F FP+E TPDQ+++I + DM MDRL+CGDVG+GKTEVA+RAAF Sbjct: 604 GPDTAEQNDFEIDFPYELTPDQSKSIEEIKQDMEIERPMDRLLCGDVGYGKTEVAVRAAF 663 Query: 644 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK 703 AV KQVA LVPTT+LAQQHY+ +R ++P+ +++ISRFR+ KE + + G Sbjct: 664 KAVMEGKQVAFLVPTTILAQQHYETLIERMQDFPIEVQLISRFRTTKEVKETKEGLKSGF 723 Query: 704 IDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTL 763 +DI++GTHKLL D+++KDLGLLIVDEE RFGVRHKERIK+++ NVD+LTLTATPIPRTL Sbjct: 724 VDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKSLKNNVDVLTLTATPIPRTL 783 Query: 764 NMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQ 823 +M+M G+RDLS+I TPP R V+T+V E ++ ++EA+ RE+ R GQV+YLYN V++I Sbjct: 784 HMSMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIY 843 Query: 824 KAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 + E+L L+P+A I + HGQM ER+LE M F + ++++V TTIIETG+D+P ANT+ Sbjct: 844 EKREQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVPNANTL 903 Query: 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGF 943 IIE AD FGL+QL+QLRGRVGRS YA+ L P K ++ A+ RL+AI +LG+GF Sbjct: 904 IIEDADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTELGSGF 963 Query: 944 ALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTE 1003 +A DL IRGAG LLG++Q G ++++GF LY ++LE AV+ + + + + + E Sbjct: 964 KIAMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKAEKQD---APEIE 1020 Query: 1004 VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDI 1063 +EL + + LP ++IP+ +++ YK++ ++E +L ++K ELIDRF P LL++ Sbjct: 1021 IELNIDAYLPAEYIPNEQSKIEIYKKLRKIESETQLMDVKDELIDRFNDYPIEVERLLEM 1080 Query: 1064 ARLRQQAQKLGIRKLEGNEKGGVIEFAEK--NHVNPAWLIGLLQKQPQHYRLDGPTRLKF 1121 ++ A G+ ++ K + +EK +N L Q + ++ K Sbjct: 1081 MEIKVHALHAGVTLIKDVGKQVEVYLSEKGTTDINGETLFKQTQPLGRTMKVGVQEG-KM 1139 Query: 1122 IQDLSERKTRIEWVRQFMRELEENAI 1147 L++ ++ ++ + LEE+ + Sbjct: 1140 KVTLNKTGNWLDSLKFLTKSLEESMV 1165 >UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFL2_CARHZ Length = 1160 Score = 1096 bits (2836), Expect = 0.0, Method: Composition-based stats. Identities = 394/1156 (34%), Positives = 606/1156 (52%), Gaps = 40/1156 (3%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL 70 + +L+ G A L+A +A+ P+++I + Q A + +++ F Sbjct: 22 INKKRIQLIYGSYGTARTFLMATVAKALNRPLLVITENEQVAREIAEDLEFFLGDKTSRF 81 Query: 71 ADWETLPYD-SFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 E +D + ++ +SR+ L +L ++ +V L ++ P Sbjct: 82 FYREGFLFDLTVREGGELKASRIELLKRLSRGEKPHTVVNYEALTRKYPPLQSFARWKRE 141 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 ++ G + + L L GY VDQV G+++ RG ++D++ G E+P+R +FF DEI Sbjct: 142 LRVGDVVELEELIRYLSQIGYERVDQVEAPGQFSQRGGIVDVYVPG-EVPFRAEFFGDEI 200 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEV---------KRD 240 DSLR DV+SQR+ + + + PA ++ + + + E KR+ Sbjct: 201 DSLRALDVESQRSQANLNEVVIYPAEVAVAEEDLLLEVKQKISADIEQQVKKLIQQNKRE 260 Query: 241 PEHIYQQVSKGTL-----PAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAE 293 ++ L IE P F+S L YF L+ G Sbjct: 261 AAGRLKEKGAEVLNILGKSEVIEKLLPYFWSG--VSLLDYFGDEYLVFLDEPGRFGEQIN 318 Query: 294 RFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN- 352 + F + L ++ ++L + L+ R+ + T LP Sbjct: 319 SLEKLRRESFTE-ALSGGYTLPKQAEVFYEEEQLMALLRG--RIAVITSLLPKTPRFIGD 375 Query: 353 ---LGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAP 409 F ++K + ++ FL + E ELL R A Sbjct: 376 YDPHNFAGRKPPNYLGKEKLFFEDIKNFLANNYRIFILRGREEAAVALKNELLKRNFPAS 435 Query: 410 QRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDT 469 E + R + +G GF + L + + +L G R R Sbjct: 436 FVEKFEVEIAPREIKIGLGVLNSGFEFPQQKLLVYTDVELAG------RAVKARVTKAVL 489 Query: 470 LIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLI 529 R G VVH HG+G+Y G+ +E GG +YL++ Y + +LYVP + + Sbjct: 490 GERAEEPFSPGDYVVHPVHGIGKYLGIKPVEVGGNVKDYLVIAYQGEDRLYVPPEQVGNL 549 Query: 530 SRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQ 589 +Y G E L +LGG W R + + VR++A LL++YA+R AK GFAF D Sbjct: 550 QKYVGVDGEPPKLSRLGGSDWQRVKNRVKAAVREMAEGLLELYAKRMAKPGFAFSPDTVW 609 Query: 590 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH 649 + F + FP+E TPDQ +AI V DM +P MDRL+CGDVG+GKTEVA+RAAF AV + Sbjct: 610 QKEFEERFPYEETPDQLKAIEEVKRDMEKPKVMDRLLCGDVGYGKTEVALRAAFKAVMDG 669 Query: 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIG 709 KQVAVL PTTLLAQQHY+ F++RF+ +PV I ++SRF++A+EQ +I+ E+ GK+DI+IG Sbjct: 670 KQVAVLTPTTLLAQQHYNTFKERFSGYPVEIRLLSRFQTAREQKEIIKELKRGKVDIVIG 729 Query: 710 THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSG 769 TH+LLQ DV+F DLGL+IVDEE RFGV KER+K + VD+LTLTATPIPRTL+MA+ G Sbjct: 730 THRLLQDDVQFYDLGLMIVDEEQRFGVAQKERLKILTETVDVLTLTATPIPRTLHMALMG 789 Query: 770 MRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 +RDLS++ TPP R V+T+V E D ++R+AI RE+ RGGQV++++N V +I + A + Sbjct: 790 IRDLSVLNTPPENRFPVQTYVLEEDPFIIRDAIRRELGRGGQVFFVHNRVSDIDEVAAWV 849 Query: 830 AELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 LVPEA++A+ HGQM+E +LERVM +F +++VLV TTIIETGID+P NT+II+ AD Sbjct: 850 QSLVPEAKVAVAHGQMKEEQLERVMLEFISGKYDVLVSTTIIETGIDLPNVNTLIIKNAD 909 Query: 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHD 949 FGLAQL+QLRGRVGRS+ AYA+L+ K + A+KRL AI + G+G LA D Sbjct: 910 RFGLAQLYQLRGRVGRSNRIAYAYLMYEKDKVLREAAEKRLAAIKEFTEFGSGLKLAMRD 969 Query: 950 LEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMP 1009 LEIRGAG LLG EQ G + +GF +YM+LL+ V LK + ++EL + Sbjct: 970 LEIRGAGNLLGPEQHGHIAAVGFDMYMKLLQETVAELKGQ-----VTSEEVEPQLELNLT 1024 Query: 1010 SLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQ 1069 + +P+ +IPD ++ Y+R++ + +LE++ ELIDRFG +P L+ + +++ Sbjct: 1025 AYIPESYIPDEKQKIEMYRRLSRTRNLEDLEDVVDELIDRFGEIPPEVENLIRLIKIKIV 1084 Query: 1070 AQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQH--YRLDGPTRLKFIQDLSE 1127 A KL ++ + ++ I+F + L + + + ++ ++ Sbjct: 1085 ASKLKVKGIFQTDEELKIQFFPNPEITAEKLSRISGQFKGRVIFGMNPDLEIRVRTKGKM 1144 Query: 1128 RKTRIEWVRQFMRELE 1143 + + + +L Sbjct: 1145 GQEIFSILERIFGQLS 1160 >UniRef50_B0U870 Transcription-repair coupling factor n=86 Tax=Alphaproteobacteria RepID=B0U870_METS4 Length = 1203 Score = 1094 bits (2830), Expect = 0.0, Method: Composition-based stats. Identities = 430/1172 (36%), Positives = 658/1172 (56%), Gaps = 48/1172 (4%) Query: 10 PVKAGEQRLLGELTGAACATLVAEIAE-----------RHAGPVVLIAPDMQNALRLHDE 58 ++ G+ L + A +VA++A + +V +A D + Sbjct: 35 ALRRGDSPTLARVPDGFDALVVADLARVLGQDPQSRASQGPAALVHVARDGTRSAAFAGA 94 Query: 59 ISQFTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPT-----MQRGVLIVPVNT 112 ++ + V+++ W+ PYD SP+ I + R++ L +L + V++ VN Sbjct: 95 LAFVAPEIEVLSIPAWDCQPYDRVSPNPAIAAERMTALSRLARTRSSEERPRVVVTTVNA 154 Query: 113 LMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLF 172 L+QRV + G + D + L++ G+ V + GEYA RG ++DL Sbjct: 155 LVQRVPARDRIAVETFSAAVGNAVDTDKIVAWLEANGFLRTGTVRDTGEYAVRGGIIDLS 214 Query: 173 PMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWR 232 P G P RLDFF D ++S+R FD ++QRT+ ++ +++L+P E I FR + Sbjct: 215 PPGLPNPVRLDFFGDTLESIRSFDPETQRTIGQLRSLDLVPMSEVQLTTETIRRFRQGYV 274 Query: 233 DTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSA 292 F + +Y+ VS+G AG+E+W PLF+ + L LF Y L+ + + + Sbjct: 275 AAFGAATRDDRLYEAVSEGRRAAGLEHWMPLFY-DRLDTLFDYLAGVPLVFDKDVDDAAG 333 Query: 293 ERF---QADTLARFE-----NRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHL 344 ER Q AR E GV P +P L +L+L E ++ +L + Sbjct: 334 ERLGQVQEYHDARCEALKAPQPGVAPYKP-LGSDALYLSPAEWAKRVEGARVARLTPFAV 392 Query: 345 PTKAANANLGFQKLPDLAVQAQQKAP----LDALRKFLETFDG---PVVFSVESEGRREA 397 P + + P ++ DA + + G V+ + SEG R+ Sbjct: 393 PESPGRPIVDCEAEPARNFAPERAQEGVNVFDAAVQHVRALQGSGHHVILAAWSEGSRDR 452 Query: 398 LGELLARIKIA-PQRIMRLDE--ASDRGRYLMIG--AAEHGFVDTVRNLALICESDLLGE 452 L +L + P+ + RL + A RG+ + + E GF LA++ E D+LG+ Sbjct: 453 LCGVLTDHGLPKPKTVTRLSDTLALKRGQDVAVAVWGLEAGFTI--ERLAVVAEGDILGD 510 Query: 453 RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLT 512 R+ R ++ ++R P +I + L G VVH +HG+GR+ G+ T+ A G + L + Sbjct: 511 RLVRPKRKAKR---PQDVILEVQALSPGDLVVHADHGIGRFTGLKTVTAAGAPHDCLEIQ 567 Query: 513 YANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIY 572 Y N L +PV ++ L++RY G E + PL KLGG AW + K ++ ++A L+ + Sbjct: 568 Y-NGGLLLLPVENIELLTRY-GSEEADVPLDKLGGGAWQARKAKLKRRILEMAGALIKVA 625 Query: 573 AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632 A+R + Y F FP+E T DQ AI A L D+ MDRL+CGDVGF Sbjct: 626 AERFLRPAPKLVPPDGTYGEFAARFPYEETEDQEAAIAATLGDLTAGRPMDRLICGDVGF 685 Query: 633 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ 692 GKTEVA+RAAF+A + +QVAV+VPTTLLA+QHY F +RF PV + SRF S+ E Sbjct: 686 GKTEVALRAAFVAAISGRQVAVVVPTTLLARQHYRTFAERFKGLPVNVAQASRFVSSAEL 745 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 ++ +A+G +DI++GTH LL + F+DLGL+I+DEE FGV HKER+KA+RA V +L Sbjct: 746 KRVREGLADGTVDIVVGTHALLAKTIGFRDLGLIIIDEEQHFGVAHKERLKALRAEVHVL 805 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 TL+ATPIPRTL +AM+G+R+LSIIATPP RLAV+TFV +D ++VREA+LRE RGGQ Sbjct: 806 TLSATPIPRTLQLAMTGVRELSIIATPPVDRLAVRTFVTPFDPLLVREALLRERYRGGQA 865 Query: 813 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 +Y+ +E++ + L +PEA++ I HGQM +LE VM F+ +F++L+ TTI+E Sbjct: 866 FYVVPRIEHLDEVKRFLDREMPEAKVGIAHGQMPAGQLEDVMTAFYEGKFDILLSTTIVE 925 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 +G+DIPTANT+I+ RAD FGLAQL+QLRGRVGRS +AYA TP KA+T A++RL+ Sbjct: 926 SGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSKARAYALFTTPEGKALTVQAERRLKV 985 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP 992 + SL+ LGAGF LA+HDL+IRGAG LLG+EQSG ++ +G+ LY ++LE+AV ALK G+ Sbjct: 986 LQSLDTLGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQQMLEDAVAALKEGKAV 1045 Query: 993 SLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGL 1052 ++ S + L P +P++++ D++ RL Y+R+A+ ++ ELE ELIDRFG Sbjct: 1046 PADEQWS--PTIALGAPVTMPEEYVSDLSVRLGLYRRLATLDSDAELESFGAELIDRFGP 1103 Query: 1053 LPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYR 1112 LP LL I ++ ++ + K+E KG V F ++ NPA L + +Q + Sbjct: 1104 LPPEVEQLLKIVTIKILCRETNVEKVEAGPKGIVFHFRDRAFANPARLAAYIAEQRSFAK 1163 Query: 1113 LDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 + + FI++L R++ +R+L + Sbjct: 1164 VRPDMSVVFIRNLDTVAERLKETTAILRDLTK 1195 >UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Roseiflexus RepID=A5UZG2_ROSS1 Length = 1265 Score = 1094 bits (2830), Expect = 0.0, Method: Composition-based stats. Identities = 469/1202 (39%), Positives = 633/1202 (52%), Gaps = 93/1202 (7%) Query: 7 YTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-Q 65 TL G + + GAA LVA + P++ + ALR H+++ Q+ Sbjct: 24 ATLHAHRGARLHIAPTPGAARTPLVAAFTLQGVAPLLYLVGTTDAALRAHEDLRQWIGTD 83 Query: 66 MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG-------VLIVPVNTLMQRVC 118 V + LPY+ S DI+++RL L++L G V++ PV LMQ Sbjct: 84 RVFLFPASDALPYEHMSTGADILTARLRVLHRLAAFNAGDVDVAPFVIVAPVKALMQPSL 143 Query: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL 178 L ++ +++G + D L +L + GYR+ V E GE RG ++D+F G +L Sbjct: 144 TPDELRDASVRLERGMAYALDDLIERLIAMGYRYAPTVEEPGEVNRRGGIIDVFSPGDDL 203 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDT---- 234 P R++FF DEIDSLR FD +QR+ ++ A + P HEFP + + L R + DT Sbjct: 204 PLRIEFFGDEIDSLRRFDPLTQRSEAQIRAAIIGPPHEFPLWRRDVALERMRAIDTSMLR 263 Query: 235 FEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLP--PLFSYFPANTLLVNTGDLETSA 292 E + + + G G + P F P L + P +V + L + Sbjct: 264 HEALDEWLQAFDHIRNGERFEGRALFAPFFRDNPQAPGTLLHHLPPGAPVVLSEALLLAQ 323 Query: 293 ERFQADTLARFENRG-VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANA 351 + D A R +D +LR EL + + V L P Sbjct: 324 HATELDQQAETRRRQQIDAGELPAAFPRPYLRWHELMALAEAHTLVNLSNNEHPFWDVLL 383 Query: 352 NLGFQKLPDLAVQAQQKAPL---------------------DALRKFLETFDGPVVFSVE 390 + P + Q P + L E F G + V+ Sbjct: 384 SDPAPLPPSFSFGEQNGNPAPLTDTRNVHPSEDRFRVHLLPERLFAPAELFGGQIRRLVD 443 Query: 391 SEGRREALGELLARIKIAPQRIMRLD------------EASDRGRYLMIGAAEHGFVDTV 438 R GE + I R+ L E G ++ G + GF Sbjct: 444 DVVERLRAGERVVLITPQAARLQELVTEALQRDASDGVENVVSGLTVLHGTLDEGFRMPA 503 Query: 439 RNLALICESDLLGERVARRRQDSRRTINPDTLIRN--LAELHIGQPVVHLEHGVGRYAGM 496 NL L ++++ G R R D RR + R L L G VVH+EHG+ Y G+ Sbjct: 504 LNLTLYSDTEIFGWRQRRIIADRRRRHDRRAEDRAAFLRGLKPGDYVVHIEHGIAVYEGL 563 Query: 497 TTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQK 556 GGI +YL L YA +LYVPV + +SRY G + L +LG W RA++K Sbjct: 564 IRRSVGGIERDYLNLRYAEGDRLYVPVDQIDRVSRYIGAGDVEPQLTRLGTQDWERAKRK 623 Query: 557 AAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDM 616 A V+D+A EL+ +YAQR EG AF D E + SFP+ TPDQ +AI V DM Sbjct: 624 ARAAVQDLAEELITLYAQRQLAEGHAFSPDTEWQRELEASFPYVETPDQLKAIIDVKRDM 683 Query: 617 CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANW 676 QP MDRLVCGDVGFGKTEVA+RAAF AV + KQVAVL PTT+L QQHYD F R A + Sbjct: 684 EQPQPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAVLAPTTVLVQQHYDTFSRRMAAF 743 Query: 677 PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGV 736 PVRI+MISRFRSAKEQ++I+ +A G+IDI+IGTH+LL DV FKDLGLL++DEE RFGV Sbjct: 744 PVRIDMISRFRSAKEQSEIVQRLARGEIDIIIGTHRLLSKDVVFKDLGLLVIDEEQRFGV 803 Query: 737 RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSM 796 RHKERIK +R NVD+LTLTATPIPRTL+MA++G+RDLSII TPP R+ +KT+V YD Sbjct: 804 RHKERIKQLRTNVDVLTLTATPIPRTLHMALAGIRDLSIIDTPPEDRIPIKTYVLPYDER 863 Query: 797 VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND 856 ++REAILRE+ RGGQVY+++N V++I A+RL LVPEARIA+GHGQ+ E +LERVM D Sbjct: 864 LIREAILRELDRGGQVYFVHNRVQSIYYVADRLRRLVPEARIAVGHGQLEEHQLERVMLD 923 Query: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 F R +VLVCTTIIE+G+D+P ANTIII+ A +FGLAQL+QLRGRVGRS +AYA+L Sbjct: 924 FFTGRDDVLVCTTIIESGLDVPNANTIIIDDATNFGLAQLYQLRGRVGRSTQRAYAYLFY 983 Query: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYM 976 + T +AQ+RL AI +LGAGF +A DLEIRGAG LLG EQSG + +GF LY Sbjct: 984 KSERPSTPEAQERLRAIQEATELGAGFRIAMRDLEIRGAGNLLGAEQSGHIAAVGFDLYS 1043 Query: 977 ELLENAVDALKA------------------------------------------GREPSL 994 LLE AV LK Sbjct: 1044 RLLEQAVRTLKQRLIATNFITGTDAMRTSPGAPAQPSDGQTPPPARSSVPSRRPAVRVDE 1103 Query: 995 EDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLP 1054 + L S ++L + + LP D+IPD RL+ Y+R+A A+T + +++ EL DRFG LP Sbjct: 1104 KVLISPLVTLDLPLDAYLPVDYIPDDRVRLAVYQRMAEAQTPEAVRDLRQELRDRFGELP 1163 Query: 1055 DPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLD 1114 +PA LL R++ A G+ + + +I E N + L + + R+ Sbjct: 1164 EPADQLLIWLRIKALALAAGVTSVVTTDAEFIIRLPEGNDQARSRLERRFAR-ARGIRIG 1222 Query: 1115 GP 1116 Sbjct: 1223 PQ 1224 >UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRR3_SYNAS Length = 1202 Score = 1092 bits (2825), Expect = 0.0, Method: Composition-based stats. Identities = 418/1183 (35%), Positives = 646/1183 (54%), Gaps = 62/1183 (5%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADW 73 E+ + L G+A A L+A ++E+ P+V+++P + A ++S F V+ W Sbjct: 28 ERLSVNRLHGSANAFLIAALSEQLGRPLVVLSPTEKEARETFQDLSLFLGSGKVLLYPPW 87 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKG 133 + D F+ +D+ R+ L +L T + V++ + LMQ+V P S L + ++ G Sbjct: 88 DIQTTDMFALQRDVELVRMEVLARLLTDEPAVIVASLKALMQKVVPRSILDAYLEILAPG 147 Query: 134 QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193 + RD L +L + GY+ + V + GE++ RG +LD+FP + P RL+F D+++SLR Sbjct: 148 SEVPRDELVAKLVAGGYQRMTLVEDKGEFSLRGHVLDIFPPLEDSPLRLEFDGDDLESLR 207 Query: 194 VFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSK--- 250 FD SQR+ EA L PA E + + R P ++ ++S+ Sbjct: 208 AFDPASQRSTGRREAFVLSPAREVILSEERRQRALQNIRYRAAALELPRNVRDRLSETID 267 Query: 251 -GTLPAGIEYWQPLFFSE-------------------PLPPLFSYFPANTLLVNTGDL-- 288 G + + PLF+ L F Y P N +V L Sbjct: 268 AGLSTSFNPLFLPLFYESLAPTSPDSPTENATATQAVRLGTFFDYLPGNCFVVLDDALAI 327 Query: 289 ETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHL---- 344 E + ER + + R + + L ++ ++ D +L+ + R+ L+ L Sbjct: 328 ENAGERIENEID-RCLLKAEREGKFYLEREASYVTKDAFIKDLRRFQRMILEGLALGRLT 386 Query: 345 -----------PTKAANANLGFQKLPDL----AVQAQQKAPLDALRKFLETF---DGPVV 386 ++ + L P+L ++ L L + + + V Sbjct: 387 EYASGNGEKTQASQYESLPLPLATDPELGDLHRGPGGEETLLAPLVEHIRRWLQEGMLVA 446 Query: 387 FSVESEGRREALGELLARIKIA---PQRIMRLDEASDRGRYLM---IGAAEHGFVDTVRN 440 F + + + LL ++ P+ + + G ++ G F+ Sbjct: 447 FLCSGKEDLQRMRHLLGNYELPVRTPEGSLISEAFLHSGPGVLSLREGRLSRSFLFPDLK 506 Query: 441 LALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLE 500 LA I E +L G+++ RR S R +R+ +L G VVH EHG+G Y G+ L Sbjct: 507 LAAISEEELFGKKITGRRIRSAR---EGYFLRSFGDLKEGDYVVHKEHGIGLYQGLQKLS 563 Query: 501 AGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEK 560 GGI ++L++ Y + KLY+P+ L ISRY G + KLGG +W R++ + Sbjct: 564 VGGIENDFLLINYQSGDKLYLPIDRLDQISRYIGPEGYVPKVDKLGGTSWDTVRERVKKS 623 Query: 561 VRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPL 620 +++VA EL+ IYA R E +F Y+ F +FP++ TPDQA+AI + +DM Sbjct: 624 IQEVAEELVAIYAAREVMERRSFAPPDAVYEEFSAAFPYDETPDQARAIEDIHADMNSAK 683 Query: 621 AMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRI 680 MDRL+CGD GFGKTEVAMR+AF + +Q AVLVPTT+LA+QH F R ++P+RI Sbjct: 684 PMDRLICGDAGFGKTEVAMRSAFRTAMDGRQTAVLVPTTILAEQHCQTFSSRMKDYPIRI 743 Query: 681 EMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE 740 E ++RF+S EQ+ +L + +G++DI+IGTH+LLQ DV FK+LGL+IVDEE RFGV HKE Sbjct: 744 EALNRFKSKAEQSSVLEGLRKGQVDIVIGTHRLLQKDVTFKNLGLVIVDEEQRFGVAHKE 803 Query: 741 RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVRE 800 ++K +R VD+LTLTATPIPRTL++++ G+RDLSII TPP R +KT+V E++ +RE Sbjct: 804 KLKKLRTLVDVLTLTATPIPRTLHLSLVGIRDLSIINTPPEDRQTIKTYVLEFNEETIRE 863 Query: 801 AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ 860 AI RE+ R GQV++L++ V +I A + +LVPEA I + HGQM+ RE+E VM F + Sbjct: 864 AIRRELARNGQVFFLHDRVRSIYTMARLVEKLVPEADIGVVHGQMKPREIEDVMGRFLRK 923 Query: 861 RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 920 NVLVCTTII +G+DIPTANTI++ RAD FGLAQL+Q+RGRVGRS +AYA+LL P Sbjct: 924 ECNVLVCTTIIGSGLDIPTANTILVNRADRFGLAQLYQIRGRVGRSSEEAYAYLLVPKGV 983 Query: 921 AMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLE 980 ++ DAQKRL+ I + G+GF +A+ D+EIRG G LLG QSG + +G+ LY EL+E Sbjct: 984 LLSRDAQKRLQVIMDFSEPGSGFRIASSDMEIRGGGNLLGTSQSGHVSAVGYELYTELME 1043 Query: 981 NAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELE 1040 + +K P E + E+ L +P+ +P++++ DV+ RL YKRI+ A + ELE Sbjct: 1044 QTIREIKGETIPEEEIV----PEINLGLPAFIPEEYMADVHRRLVTYKRISMADSNEELE 1099 Query: 1041 EIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWL 1100 EI+ EL D FG LP LL++ RLR + + + ++K+ + K + F+ V P + Sbjct: 1100 EIRDELADCFGYLPPEVTNLLEVIRLRNRLKAIRVKKMGYDTKQMFLFFSADTPVEPERI 1159 Query: 1101 IGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELE 1143 + L +K+ + RL ++ + +E + +R L Sbjct: 1160 LSLARKKLKGLRLTPDCKIYIPMPGLKGSEILEKAGEVLRLLS 1202 >UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ97_DESAH Length = 1165 Score = 1088 bits (2815), Expect = 0.0, Method: Composition-based stats. Identities = 399/1153 (34%), Positives = 650/1153 (56%), Gaps = 38/1153 (3%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD---QMVMNLADWET 75 L + G+ A + A++ + +V++ PD + A+ DE+ + + V+ + Sbjct: 18 LTGVHGSGSAYITAKLFASNDCSLVVVLPDRKRAMAFMDELEFYLPKGKRRVIYFPGYNI 77 Query: 76 LPYDSFSPHQDIISSRLSTLYQLPTMQRG-VLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 LP+ + S H + S R++ LY+L + + +++ V+TL+ ++ P L A ++ + Sbjct: 78 LPFKALSFHSETASKRIAALYKLLSRREHHLIVTHVDTLLLKMIPRKRLADAADLVINNE 137 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 194 + RD L +L++ GY V E G+Y+ RG +LD+F + P R++ F D ++SLR Sbjct: 138 EIDRDLLVARLNAGGYIRTSLVEEPGDYSVRGGILDVFSPSATFPVRIELFGDYVESLRF 197 Query: 195 FDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDT-FEVKRDPEHIY---QQVSK 250 F +QR +++++ I ++PA+E D A + + R + DP I ++ + Sbjct: 198 FSPITQRGIKDIQEIEIVPANEAVIDPAELPEILGRLRKAGADAGVDPVVIRGHVDKIRE 257 Query: 251 GTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQADTLARFENRGV 308 G+E + + E L Y P + L + N D+E A F+ + + Sbjct: 258 EGRFPGMEGMLSIVYPE-LDSFMDYVPDHALFLLENPLDIEAGATAFEQKARQNY-TSAL 315 Query: 309 DPMRPLLPPQSLWLRVDELFSELKNWPRV---QLKTEHLPTKAANANLGFQKLPDLAVQA 365 R + P+SL++ ++ S L V +L + T +A + L+ Sbjct: 316 AENRLSVTPESLYIEWSQVKSRLFEKKPVCFKRLTMDRRETDSAAFSFDISDNTFLSSTL 375 Query: 366 QQKAPLDALRKFLETF-------DGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEA 418 + + +AL + L + V S + + L +L + P + +E Sbjct: 376 KGEGKTEALFQPLADWFLDKKNDGSRAVAVCSSTTQSQRLVAILRPYGVEPTFLKGFEEV 435 Query: 419 S--DRGRYLMIG----AAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIR 472 G Y + G GFV + +AL+ ++ G A+RR+ + T + Sbjct: 436 ENQKPGIYCIPGYASGNLTRGFVFPEQGIALVTNQEIFG---AKRRRSAGGTKRAKSQFI 492 Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 EL G VVHLEHG+GRY G+ TL+ GI+G+++++++ +D +LY+PV + ++ +Y Sbjct: 493 TPEELKEGDIVVHLEHGLGRYEGLVTLKLEGISGDFILISFRDDDRLYLPVDRMEMVEKY 552 Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 G + L K+GG W ++R KA ++V +A ELL +YA+R +GFAF + Sbjct: 553 IGVDGYSPILDKIGGKTWQKSRAKAKKEVEKMAGELLKLYAERRVAKGFAFSRPDHFFND 612 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F SFPFE TPDQ +AI+ VL DM MDRLVCGDVG+GKTEVA+RA F AV + KQV Sbjct: 613 FEASFPFEETPDQLKAIDDVLVDMESERPMDRLVCGDVGYGKTEVAIRATFKAVTDGKQV 672 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 A++VPTT+LA+QH FR+RF N+P+ +E +SRFR+ EQ +I+ ++ +GK+D++IGTH+ Sbjct: 673 AIVVPTTILAEQHVHTFRERFGNYPITVESLSRFRTKGEQAKIVKDLEQGKLDVVIGTHR 732 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 LLQ D+ FK LGLL++DEE RFGV+HKE +K R++VD+L LTATPIPRTL+M+++GMRD Sbjct: 733 LLQKDIAFKSLGLLVIDEEQRFGVKHKEALKKRRSSVDVLALTATPIPRTLHMSLTGMRD 792 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 832 +SII+TPP R + +++ EYD + AI +E+ RGGQ+++++N+++ I K AE L +L Sbjct: 793 ISIISTPPVDRQPIVSYISEYDDAIAAGAIQKELERGGQIFFIHNNIKTIFKTAENLKKL 852 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 VPE RIA+ HG++ E LE+ M F ++ ++LVCTTI+E+G+DIP+ANT+II RAD FG Sbjct: 853 VPEVRIAVAHGRLNEASLEKAMLQFINREIDMLVCTTIVESGLDIPSANTMIINRADMFG 912 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 LAQ++QLRGR+GR QAYA+L P +T DAQKRL A+ DLG+GF +A DL+I Sbjct: 913 LAQIYQLRGRIGRGEEQAYAYLFVPEEHRLTRDAQKRLAALMEHRDLGSGFQIAMKDLQI 972 Query: 953 RGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLL 1012 RGAG LG QSG + +G+ ++++LL+ AV LK + E+ + + + + Sbjct: 973 RGAGSALGGSQSGHVAAVGYDMFLKLLDEAVADLKGQ-----PLTDPLEPEINVTLSTFI 1027 Query: 1013 PDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 D+++ + RL+ Y+R++ T E+ ++ EL+DRFG LP+ A +L LR K Sbjct: 1028 SDEYVQSIEQRLTIYRRLSQMTTVKEVAAMQQELVDRFGKLPEEAGNMLLKIMLRVLCVK 1087 Query: 1073 LGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQ--DLSERKT 1130 G++KL+ + F+ + P L G + + L+F Sbjct: 1088 AGVKKLDLTNTSLTLVFSAVHQRRPQALAGGVSMINAAHEFTAENTLRFSIGGKFKPVTR 1147 Query: 1131 RIEWVRQFMRELE 1143 + ++ ++ + Sbjct: 1148 ALGEAKKILQVIA 1160 >UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Acidobacteria RepID=Q1IHV1_ACIBL Length = 1182 Score = 1087 bits (2811), Expect = 0.0, Method: Composition-based stats. Identities = 400/1173 (34%), Positives = 633/1173 (53%), Gaps = 40/1173 (3%) Query: 2 PEQYRYTLPVKAGEQRL-LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60 PE R VK+G R+ + LT +A A A ++ P++++ P + A L + Sbjct: 17 PEFLRAATQVKSGTGRIRVSGLTPSARALHYALFSKATLKPLIVVVPSNRAAEELLPIVQ 76 Query: 61 QFTD-------QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTL 113 + + V+ L ++ LPY++ SPH +I +R + L+++ + +I P Sbjct: 77 AYCELTGTAHADAVVMLPAYDVLPYENLSPHPEIQEARAAALWKIVSGTARFVIAPFVAT 136 Query: 114 MQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFP 173 P F V+ +G + D LR L+++GY VD V GEYA RG +LD++P Sbjct: 137 AMHYRPAEFYFDLTKVINRGNSIDSDELRAHLNTSGYSTVDVVEMPGEYALRGGILDIYP 196 Query: 174 MGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWR- 232 SE P R++ F DE++S+R FD ++QR+ + + LLP + P + + ++ Sbjct: 197 PESEHPVRIELFGDEVESIRKFDTETQRSAGATDEVVLLPLSDTPVREDILGSIHAKLSG 256 Query: 233 DTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSA 292 + + + T+ G EY+ ++ LF P +L + S Sbjct: 257 RRLDADEETLEAIARAEGVTVFPGWEYYAGATANQR---LFDLLPNAAVLRDDPVKIESD 313 Query: 293 -ERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANA 351 E + E GV L+ P+ L D + + P ++ + +++ Sbjct: 314 FEAWWERVQQSHERSGVG---HLVRPEDLLDSPDTWQQRIASLPGADVEQLGMYSESGE- 369 Query: 352 NLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIA--- 408 + Q A ++ ++ L T V+F+ + G E L ++ + + Sbjct: 370 QIAIQSQSTSKFHGSVPAMVEEVKALL-TDGRRVLFAAANTGEVERLADIFSEYMVPFRV 428 Query: 409 -----------PQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGE-RVAR 456 ++ G L DL E VA Sbjct: 429 GSRSTRPGQETYIEEQGFFAEDLSATTVVKAYVPEGVAMPESRFVLFGTRDLFDESEVAS 488 Query: 457 RRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLE-AGGITGEYLMLTYAN 515 +Q R + + +L I VVH+EHG+G+Y G+ + G E+++L YA Sbjct: 489 AQQPKRSRSKVSAFLSDFRDLTINDYVVHVEHGIGQYQGLKEIAQGDGEPAEFMILEYAE 548 Query: 516 DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR 575 A+LYVP++ L LI +Y L++LG W++ + + + ++D+A ELL +YA R Sbjct: 549 GARLYVPLTRLDLIQKYRSSEGVKPALNRLGTQQWAKTKARVKKAMKDMADELLKLYAAR 608 Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 +G AF + + F D+F F T DQ AI V DM MDRL+CGDVG+GKT Sbjct: 609 KTAKGHAFSATGQFEREFDDAFEFNETEDQENAIRDVRQDMESDTPMDRLLCGDVGYGKT 668 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 EV+MRAAF AV ++KQVAVL PTT+LA QH++ F+ RF+ +PV++EMISRFR+AK+Q +I Sbjct: 669 EVSMRAAFKAVSDNKQVAVLAPTTVLAFQHFETFKRRFSAFPVKVEMISRFRTAKQQKEI 728 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 + V G++DILIGTH++L D+ F DLGL+++DEE RFGVRHKER+K +R VD+LT++ Sbjct: 729 VERVNNGQVDILIGTHRVLSKDIHFPDLGLVVIDEEQRFGVRHKERLKQLRKEVDVLTMS 788 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYL 815 ATPIPRTL+M++ G+RD+S+I TPP R+A++T V ++D +++ AI +E+ RGGQ+Y++ Sbjct: 789 ATPIPRTLHMSLLGLRDMSVIETPPKDRMAIQTVVAKWDEKLIKSAIEQELDRGGQIYFV 848 Query: 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 +N VE+I + ++++ ELVP+A+I +GHGQM E +LE +M F ++LV TTIIE G+ Sbjct: 849 HNRVESIYEISDKIHELVPKAKILVGHGQMGEGQLEDIMLKFMRHDADILVATTIIENGL 908 Query: 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 DIP NT+I+ RAD GL++L+QLRGRVGRS+ +AYA+LL P + +T A++RL A+ Sbjct: 909 DIPLCNTMIVNRADRHGLSELYQLRGRVGRSNRRAYAYLLVPPDRELTELARRRLAALKE 968 Query: 936 LEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLE 995 DLGAGF +A DLE+RGAG LLG EQSG +E +GF LY +LE V +K + Sbjct: 969 FSDLGAGFKIAALDLELRGAGNLLGGEQSGQIEAVGFELYTTMLERTVREMKGEVQE--- 1025 Query: 996 DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPD 1055 +T++ L + +P ++I + N RL YKR+A + E +L ++ EL DR+G P Sbjct: 1026 --EQAETQLNLGLNIRIPPEYIKEENQRLRMYKRVAGVEGEPQLNDVAAELQDRYGAPPA 1083 Query: 1056 PARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDG 1115 P R L+ ARLR A+++GI ++ + F EK ++P L + + + Sbjct: 1084 PVRNLIQYARLRLLAERIGIAGIDRQRDQINMRFTEKAQIDPEKLAKFVGRTKG-AKFTP 1142 Query: 1116 PTRLKFIQDLSERKTRIEWVRQFMRELEENAIA 1148 LKF + + +++L + A+A Sbjct: 1143 QGILKFALKAITADEVLNGLLALLQQLSDAAVA 1175 >UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamily II helicase) n=34 Tax=Lactobacillaceae RepID=Q03SZ8_LACBA Length = 1180 Score = 1086 bits (2809), Expect = 0.0, Method: Composition-based stats. Identities = 382/1161 (32%), Positives = 634/1161 (54%), Gaps = 46/1161 (3%) Query: 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN-LAD 72 G+++L+ L G+A +A + +V + + +A +L D+++ D + Sbjct: 23 GQRQLVTGLNGSAETLFIASLLHEQQRSLVYVTDTLYHASQLVDDLANLLDDDELFDFPV 82 Query: 73 WETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKK 132 E L + + + S+R+ L L + + V++ ++ L + + + + Sbjct: 83 EELLAAEVATSSPEYRSARIDALRALQSDRPVVVVTSLSGLRRFLPTPANFAAARFTVSV 142 Query: 133 GQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 G +AL+ +L + GY H V G++A RG+++D++P+ ++ P R+DFFD E+DSL Sbjct: 143 GDEFDLEALQQKLFAMGYAHQKLVAAPGDFAVRGSIIDIYPLAADYPIRIDFFDTEVDSL 202 Query: 193 RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF-------------EVKR 239 R FD +QR+++ + + +LPA +F + R T + Sbjct: 203 RYFDPATQRSIDNGQTVEVLPATDFILTADERATGATALRTTLQAQAADLAAEDATTLTN 262 Query: 240 DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQA 297 + + + KG++ + + F E + Y P + +++ + L+ + + Sbjct: 263 QVQPLIDGLQKGSVDPQLLEFADYLFPE-HHQVLDYLPDDGVVLFGDYVRLQDAERQLLE 321 Query: 298 DTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQK 357 D ++ + Q + ++ L + +L FQ Sbjct: 322 DEANWATDKLA---HHQIFTQQTFGGELRPIVRADKHAQIMLAL----FQKGMGSLRFQA 374 Query: 358 LPDLAVQAQQKAP--LDALRKFLETFDG---PVVFSVESEGRREALGELLARIKIAPQRI 412 + ++ +A Q+ L ++ ++ + VV V+ E R + + L +I Sbjct: 375 MTNMTTRAMQQFFGQLPVMKTEIDRWHKQQQTVVLLVQDEERLAKIEQTLDDFEIQAVLT 434 Query: 413 MRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIR 472 + L+ + GF +L +I E+++ + +++ R+T+ ++ Sbjct: 435 KSAN-LQPALTQLVPERLQTGFELPEASLVVITEAEMF--QKVTKKRPRRQTMANAERLK 491 Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 + +L G VVH+ HG+G++ GM TL G+ +Y+ + Y ++A+L++PV+ L+LI +Y Sbjct: 492 SYTDLKPGDYVVHVNHGIGKFIGMQTLTVDGVHQDYMTIDYQDNAQLFIPVTQLNLIQKY 551 Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 ++ ++KLGG W++ + K A K+ D+A EL+D+YA+R+A++G+AF D Sbjct: 552 VSSEDKKPKINKLGGSEWAKTKSKVAAKIEDIADELVDLYAKRSAEKGYAFPVDDSLQHD 611 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F + FP+ TPDQ + I V DM +P MDRL+ GDVG+GKTEVA+RAAF AV+ KQV Sbjct: 612 FENDFPYAETPDQLRTIEEVKHDMEKPRPMDRLLVGDVGYGKTEVALRAAFKAVEAGKQV 671 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 A LVPTT+LAQQHYD RF +P+ +EM SRFR+ K+ Q + ++ G++DI++GTH+ Sbjct: 672 AFLVPTTILAQQHYDTMVSRFEGYPINVEMFSRFRTTKQIHQAIKDLETGQLDIVVGTHR 731 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 LL DVKFK+LGL++VDEE RFGV+HKER+K ++ANVD+LTLTATPIPRTL+M+M G+RD Sbjct: 732 LLSQDVKFKNLGLVLVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMLGVRD 791 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 832 LS+I TPPA R ++T+V E ++ +++ I RE+ RGGQV+YL+N V++I+K ++ L Sbjct: 792 LSVIETPPANRFPIQTYVMEQNAGAIQDGIRREMQRGGQVFYLHNRVDDIEKTVGQIQVL 851 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 VPEAR+ HG+M E +LE V+ DF ++VLV TTIIETGIDIP ANT+ +E AD G Sbjct: 852 VPEARVGYIHGKMTEAQLEGVLFDFLRGDYDVLVTTTIIETGIDIPNANTLFVENADRMG 911 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 L+QL+QLRGR+GRS+ AYA+ K +T ++KRLEAI +LG+GF +A DL I Sbjct: 912 LSQLYQLRGRIGRSNRVAYAYFTYQPNKVLTEVSEKRLEAIKDFTELGSGFKIAMRDLSI 971 Query: 953 RGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLL 1012 RGAG LLG++Q G + ++G+ LY ++L +AV + + T +EL + + L Sbjct: 972 RGAGNLLGKQQHGFINSVGYDLYTQMLSDAVAKKRGQKTQ-----PKTDTTIELGVEAYL 1026 Query: 1013 PDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 P D+I D ++ YKRI + ++E+ EI+ +LIDRFG P LL I +L+ A Sbjct: 1027 PSDYIEDEQQKIEMYKRIRQLEDDDEVSEIQADLIDRFGEYPPAVDQLLTIGQLKLAADL 1086 Query: 1073 LGIRKLEGNEKGGVIEFAEKNH--VNPAWLIGLLQKQPQHYRLD-GPTRLKFIQDLSERK 1129 + K+ + +++ + + L + RL L Sbjct: 1087 ALVDKIRRVNGDVFVTVSKQGTEILGGEDVFKALAVTQLKATVGINDDRLHIKLVLQPNM 1146 Query: 1130 TRIEWVRQF------MRELEE 1144 T +W+ Q +RE+ E Sbjct: 1147 TTTDWLPQVQAFMVTLREIVE 1167 >UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chloroflexus RepID=A9WHG9_CHLAA Length = 1185 Score = 1083 bits (2801), Expect = 0.0, Method: Composition-based stats. Identities = 438/1083 (40%), Positives = 616/1083 (56%), Gaps = 50/1083 (4%) Query: 41 PVVLIAPDMQNALRLHDEISQFTD-QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLP 99 P + I ++ALR D++ Q+ V + LPY+ SP +D+++ RL+ L L Sbjct: 64 PTLYITLSAESALRAADDLRQWLGSDQVWLFPPADALPYEQMSPGRDVLARRLAVLRGLQ 123 Query: 100 TMQ-RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVME 158 T GV++ V LMQ P S L + +++G ++S + L GY+ V V E Sbjct: 124 TGSFSGVIVTSVKALMQPTLPPSDLANATIRLQRGMQVSIEETVVTLLDNGYQRVAMVEE 183 Query: 159 HGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFP 218 GE + RGA+LD++P G ELP R+++FDDEIDSLR FD +QR+ + +E ++ P HE P Sbjct: 184 PGELSRRGAILDVWPPGDELPLRIEWFDDEIDSLRRFDPATQRSEQRLERADIGPPHEIP 243 Query: 219 TDKAAIELFRSQWRD----TFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFS 274 + L R D EV+ + +Q++ G G ++ P F+ + L Sbjct: 244 FWRRDEALRRIDALDMSQLRREVRDEWAVAREQLAGGQRFEGRAFYAPFFY-DQTATLLD 302 Query: 275 YFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSL-WLRVDEL-FSELK 332 Y P +++ + + D A + + L P +LR EL E Sbjct: 303 YLPPQSMVALAEGHLLAQHADEIDVQAAGYRDQLLALGELPPDFPRPYLRWSELHLKESA 362 Query: 333 NWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESE 392 V L P + G L Q + +D + + + + V + ++ Sbjct: 363 KLVVVDLSHNEYPDALPPLSFGVPPL----YGGQLRRLIDTVVEQVRGGELVVAVTAQAA 418 Query: 393 GRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGE 452 +E +GE LA+ ++ + + + G E GF +L L+ +S++ G Sbjct: 419 RLQELVGERLAQETVSGRFVP------------IHGGLEAGFTLADLHLTLLTDSEIFGV 466 Query: 453 RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLT 512 R R + RR L L G VVH+EHG+ + GM + EYL+L Sbjct: 467 RQRRPLAERRRKTGTTDRAAFLRTLKPGDYVVHIEHGIAIFDGMIRRTVSEVEREYLVLR 526 Query: 513 YANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIY 572 YA + K+YVPV + ++RY G + L +LG W R ++K V+D+A ELL +Y Sbjct: 527 YAGEDKIYVPVDQIDRVTRYIGAGDGPPTLTRLGTQDWERTKRKVRAAVQDLAEELLRLY 586 Query: 573 AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632 AQR K G+AF D E + SFP+ T DQ +AI V +DM +P MDRLVCGDVGF Sbjct: 587 AQRQLKSGYAFSPDNEWQRELEASFPYLETDDQLRAIAEVKADMEKPTPMDRLVCGDVGF 646 Query: 633 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ 692 GKTEVA+RAAF AV + KQVA+LVPTT+LAQQH+D FR R A +PV +EM+SRFRS KEQ Sbjct: 647 GKTEVALRAAFKAVQDGKQVAILVPTTVLAQQHFDTFRKRMAAFPVTVEMLSRFRSPKEQ 706 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 I+ ++A GKIDI+IGTH+LL +DV F++LGL+I+DEE RFGVRHKER+K MR VD+L Sbjct: 707 DAIIRDLARGKIDIIIGTHRLLSNDVVFRNLGLVIIDEEQRFGVRHKERLKLMRTEVDVL 766 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 TLTATPIPRTL+MA++G+RDLS+I TPP R+ +KT+V D +++E I RE+ R GQV Sbjct: 767 TLTATPIPRTLHMALAGIRDLSVIDTPPEDRIPIKTYVVPTDDHLIQEVIRRELEREGQV 826 Query: 813 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 Y ++N V++I AERL LVPEARIA+GHGQ+ ERELE+VM DF R++VLVCTTIIE Sbjct: 827 YVVHNRVQSIYHVAERLRRLVPEARIAVGHGQLAERELEQVMIDFFEGRYDVLVCTTIIE 886 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 +G+D+P ANTIII+ A ++GLAQL+QLRGRVGR +AYA+LL + MT DA+ RLEA Sbjct: 887 SGLDVPNANTIIIDDATNYGLAQLYQLRGRVGRGATRAYAYLLYNAARVMTNDARLRLEA 946 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP 992 I +LGAGF +A DLEIRGAG LLG EQSG + +GF LY LLE AV LK + Sbjct: 947 IQEATELGAGFRIAMRDLEIRGAGNLLGAEQSGHIAAVGFDLYSRLLEQAVRKLKQDVDE 1006 Query: 993 SLEDLTS------------------------QQTEVELRMPSLLPDDFIPDVNTRLSFYK 1028 E T ++L + + LP D+I D RL+ Y+ Sbjct: 1007 LAETATDSSVTPAVMAESLRAPNVSERVLVAPLVTIDLPLTAYLPPDYISDETVRLAVYQ 1066 Query: 1029 RIASAKTENELEEIKVELIDRF-GLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVI 1087 R+ A T +E+ ++ ELIDRF G LP+P L+ ++R A + G+ + I Sbjct: 1067 RMVDATTLDEVRGLRQELIDRFGGPLPEPVLHLILWLQIRLLALQAGVASITTEGDVFFI 1126 Query: 1088 EFA 1090 + Sbjct: 1127 RLS 1129 >UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBU7_THET1 Length = 1150 Score = 1083 bits (2801), Expect = 0.0, Method: Composition-based stats. Identities = 419/1126 (37%), Positives = 637/1126 (56%), Gaps = 47/1126 (4%) Query: 10 PVKAGEQRL-LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT--DQM 66 + GE+ L +A L A + +LI P + A + D +S + + Sbjct: 22 QLSRGEKVCYLPSAVPSAYPALWATLFAEMHTDTLLIVPRPEEAQNVADSLSTYLWDPKR 81 Query: 67 VMNLADWETLPYDSF-SPHQDIISSRLSTLYQLPT--MQRGVLIVPVNTLMQRVCPHSFL 123 V+ + LPY+ SP QD RLS L ++ + +++ V ++++ + Sbjct: 82 VLLWPAHDDLPYERIASPTQDSPFRRLSALERILRTDREPLLIVASVKSILEPTLARRYF 141 Query: 124 HGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLD 183 H +K G + AL ++ GY V V E G+++ RG + D++ S+LP RL+ Sbjct: 142 EDHREFVKTGDAVDIIALANRVAELGYSPVASVEEVGQFSRRGGIFDIWTPSSDLPIRLE 201 Query: 184 FFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD--- 240 F DE++S+R+FD ++QR+ E+E+ +++ +E P + L R Q D ++ + Sbjct: 202 LFGDEVESIRLFDPETQRSTREIESFSIISPYEIPVAEYESALERLQQIDLSNLRHEVTS 261 Query: 241 -PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV----NTGDLETSAERF 295 + +++S G LPA I +F L L Y T++ + L S R Sbjct: 262 SWKQSLEKLSAGDLPA-IHSIIAPYFPSGLGNLLDYLSEGTIVFTDLPDRLALTASTLRS 320 Query: 296 QADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGF 355 + + + D LL P W +++ LK P+++ P +A NL F Sbjct: 321 HIEGMRLEMEQSGDIPSNLLSPVFEWSYIED---RLKALPKIE------PVNSAEGNLKF 371 Query: 356 QKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRL 415 P + + +D LR +++ +G VF V E + + + Sbjct: 372 YPAPQIR--SSTIDIVDNLRSWID--EGRTVFIVTRHH--ERIRHVAKEHNLPLAL---D 422 Query: 416 DEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLA 475 ++ +++ G+ + G++ NL ++ +++L G R RR + R+ LA Sbjct: 423 EDVKQGQMFIVPGSIQDGWICDDINLVVLSDTELWGYREPRRARSPRKAPQR----VFLA 478 Query: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGG 535 +L G VVH++HGV +Y G + G EYL+L YA +LYVPV + IS Y GG Sbjct: 479 DLQPGSYVVHVDHGVAKYVGNVMRGSSGAEREYLVLEYAGGDRLYVPVDQIDRISPYIGG 538 Query: 536 AEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCD 595 E L +LG W+R +++A + +A ELL +YA R +G +F D E ++ F Sbjct: 539 GE--PALSRLGTADWARTKRRAKKAADQLAKELLQLYAAREIAKGHSFSPDNELHKEFES 596 Query: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655 +FP+ T DQ AI V +DM P MDRL+CGDVG+GKTEVA+RAAF AV + KQVAVL Sbjct: 597 AFPYVETDDQLAAIEDVKADMESPKPMDRLICGDVGYGKTEVALRAAFKAVADGKQVAVL 656 Query: 656 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 715 VPTT+LA QHY+ FR RF + +R+EM+SR R+ KE+ Q+L ++ +G +DI+IGTH +LQ Sbjct: 657 VPTTVLALQHYETFRSRFNPFGIRVEMLSRLRTKKERDQVLEDLQKGNVDIVIGTHTILQ 716 Query: 716 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 775 +V FKDLGL+IVDEE RFGV+HKE +K +R VD+LTLTATPIPRTL MA+SG+RD+S+ Sbjct: 717 KNVVFKDLGLVIVDEEQRFGVKHKETLKQIRTQVDVLTLTATPIPRTLQMALSGVRDMSV 776 Query: 776 IATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE 835 I T P RL V T++ + ++R++I+RE+ RGGQV+Y++N V++I K A +L E+VPE Sbjct: 777 IETAPEDRLPVYTYIVPKNDSIIRDSIIRELERGGQVFYVHNRVQDIYKVAHKLQEMVPE 836 Query: 836 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 895 ARI + HGQM E++LE+VM DF H ++VLVCTTIIE+G+DIP ANT+I++ A H GLAQ Sbjct: 837 ARITVAHGQMPEQQLEQVMLDFMHHHYDVLVCTTIIESGLDIPNANTLIVDDATHMGLAQ 896 Query: 896 LHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGA 955 L+QLRGRVGRS ++AYA+L+ MT DAQKRLEAI+ LGAGF +A DLEIRGA Sbjct: 897 LYQLRGRVGRSSNRAYAYLMYRPDARMTEDAQKRLEAISEATQLGAGFRVAMKDLEIRGA 956 Query: 956 GELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDD 1015 G LG EQSG + IG LY +++E AV L+ G+ S ++L +P+L+P+ Sbjct: 957 GNFLGPEQSGHVYAIGLELYTQMIERAVQELRTGQPIS----EPPAVTIDLPIPALIPEH 1012 Query: 1016 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 ++ D +TR+ Y+R+AS T EL ++ E+ DRFG LP+ A L+ + L+ A K G+ Sbjct: 1013 YVSDRDTRIRLYRRLASTSTARELRSMESEMRDRFGPLPEEAINLIKLIDLKIVAAKAGV 1072 Query: 1076 RKLEGNEKGGVIEFAEKNHVNPAWLIGL--LQKQPQHYRLDGPTRL 1119 + + +I+ N L ++ P R++ + Sbjct: 1073 TAIRAADNEVIIK--TDNPPPAERLAHWRGVRVVPGQVRVEISGKP 1116 >UniRef50_Q6ARL4 Related to transcription-repair coupling factor n=2 Tax=Desulfobulbaceae RepID=Q6ARL4_DESPS Length = 1184 Score = 1078 bits (2789), Expect = 0.0, Method: Composition-based stats. Identities = 422/1159 (36%), Positives = 649/1159 (55%), Gaps = 46/1159 (3%) Query: 10 PVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN 69 + + L L G++ A L A++A+ + I PD + + F+++ +++ Sbjct: 9 QIDKKKAITLSGLRGSSTALLAAQLAKNSSC--CCIVPDDHLIPIVVQNLQLFSEKTILS 66 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ-RGVLIVPVNTLMQRVCPHSFLHGHAL 128 E PY + SP Q + ++RL++LYQ + +++ + L++RV P L Sbjct: 67 YPSHEIPPYTALSPDQKVTATRLASLYQAANSEHPTIIVTSIEALLRRVIPKELLSARVE 126 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG--------SELPY 180 ++ G+ RD L T L GY V G++A RG ++D++P E P Sbjct: 127 LIMAGEDCDRDGLITSLLLLGYDKVSLTKNVGDFAVRGGIIDIYPPAFALENGQLHEGPL 186 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAA------IELFRSQWRDT 234 RLDFF D ++SLR FD SQR+ ++E LLP +F D +A I D Sbjct: 187 RLDFFGDTVESLRTFDPVSQRSTGKLEEAILLPTRDFIIDTSAKKSLQEIGTALQTRADK 246 Query: 235 FEVKRDP-EHIYQQVSKGTLPAGIEYWQPLFFS-EPLPPLFSYFPANT--LLVNTGDLET 290 + + + + ++++ G AGIE + PLFF + L LF + +T +L+++ ++ Sbjct: 247 YSWNEELTQTMLEKINTGQGIAGIESFLPLFFPGKNLSSLFDFLTEDTTMVLMDSFAIQQ 306 Query: 291 SAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLK---TEHLPTK 347 S + P LPP+ ++L +E+ +L ++ +V+L +E Sbjct: 307 SMRMSYQRIEQNYLEVQGAGT-PALPPKEIFLSPEEIKEKLSSFRQVRLSDIVSEQDNAT 365 Query: 348 AANANLGFQKLPDLAVQAQQKAPLDALRKFLETF---DGPVVFSVESEGRREALGELLAR 404 + N ++A + ++ L L + + + +V SE + L E+L R Sbjct: 366 SYNTQSHGLLKQEIARRRAKEGILVPLIERIRQWQEEGHRIVICCRSEKHTKNLAEMLER 425 Query: 405 IKIAPQRIMRL-------DEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARR 457 + A R L GF + +I ES+L G+ Sbjct: 426 HHFNISVVPSPLSLPDLQKRAEQREILLCDHPLSEGFSLPEQGWDIISESELFGQMRLGS 485 Query: 458 RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDA 517 ++ + EL+ G VVH +HG+G Y G+ + IT +++ + Y +D Sbjct: 486 KKSKSKKWAEPI---EFTELNEGDIVVHRDHGLGIYRGLNAIRIQEITNDFMSIEYRDDD 542 Query: 518 KLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAA 577 KLYVPV L+L+SRY G ++ + KLG W +K E+V VA ELL+IYA+R Sbjct: 543 KLYVPVDRLNLVSRYQGISDREPRIDKLGSQNWRNTTKKVKEEVWKVAHELLEIYAKREL 602 Query: 578 KEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV 637 K G AF + YQ +SFPF+ T Q AIN+VL D+ MDRLVCGDVG+GKTEV Sbjct: 603 KAGRAFAPPGQLYQELEESFPFDETAGQLAAINSVLDDLTDANPMDRLVCGDVGYGKTEV 662 Query: 638 AMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILA 697 A+R AF V++ Q A+LVPTT+LA+QH FR+R N+P+RIE ++RFR+AKEQ +I+ Sbjct: 663 AIRGAFKVVEDGAQAAILVPTTVLAEQHLKTFRERLQNFPLRIECLNRFRTAKEQREIVK 722 Query: 698 EVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTAT 757 ++A GKIDI+IGTH+LL DV+FKDLGLLI+DEEHRFGV HKER++ MRA VDILTLTAT Sbjct: 723 DLAAGKIDIVIGTHRLLSKDVQFKDLGLLIIDEEHRFGVAHKERLRKMRAEVDILTLTAT 782 Query: 758 PIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYN 817 PIPRTL M++ +RDLS+I++PP +R VKTFV E D +V++EAI RE+ R GQ ++++N Sbjct: 783 PIPRTLQMSLLSIRDLSVISSPPEQRRPVKTFVAEDDDLVIKEAISRELRRKGQTFFVHN 842 Query: 818 DVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 877 V++I + A ++ +LVP+ARIA+ HGQM +ELE +M F ++ +VLV TTIIE+G+DI Sbjct: 843 RVKSIYQIANKIEKLVPDARIAVAHGQMDTKELENIMVSFVNKEVDVLVATTIIESGLDI 902 Query: 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 P+ANT+II RAD+ GLA+++QLRGRVGRS Q++A+LL P +++ D+++RL A+ Sbjct: 903 PSANTMIINRADNLGLAEMYQLRGRVGRSSTQSFAYLLVPSLDSISKDSRERLRALMECN 962 Query: 938 DLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDL 997 +LG GF LA +DL+IRG G LLG QSG++ IG+ LY++LL+ V LKA + E Sbjct: 963 ELGGGFKLAMNDLQIRGGGNLLGISQSGNIAAIGYDLYLDLLQKTVADLKAQKLSQEEQG 1022 Query: 998 TSQ--QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASA-KTENELEEIKVELIDRFGLLP 1054 E+ L+ + +P ++I D++ R Y+RIA+ + + +I+ EL DR+G +P Sbjct: 1023 IYDDLDPEINLQHSAFIPSNYITDIDQRYIVYRRIAAMSRGMADFADIRDELSDRYGRIP 1082 Query: 1055 DPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHY--- 1111 TLL + ++++ +L + KLE V+ F + V P LI + + Sbjct: 1083 AETETLLKMIEVKRELIELRVTKLERGRGNIVLTFQDDTPVQPVKLIAFIAESKATKKQA 1142 Query: 1112 --RLDGPTRLKFIQDLSER 1128 +L RL E+ Sbjct: 1143 APKLTQDGRLIVFMHSEEK 1161 >UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myxococcaceae RepID=MFD_MYXXA Length = 1201 Score = 1078 bits (2788), Expect = 0.0, Method: Composition-based stats. Identities = 444/1171 (37%), Positives = 666/1171 (56%), Gaps = 44/1171 (3%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ----- 65 ++AG++ L GAA ++A + P+V +A D + A L ++S F Sbjct: 38 LRAGQRVRTQGLKGAARGHVLARLHGALRAPLVCVAVDEEAADALAADLSFFLGGQGSLL 97 Query: 66 --MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQR-GVLIVPVNTLMQRVCPHSF 122 V+ L E LPYD SP ++ RL L+ L R L++ V L ++V P + Sbjct: 98 APRVLRLPADEVLPYDEVSPDAAAVTERLGALFHLGQGTRFPALVLSVRALHRKVLPLAV 157 Query: 123 LHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRL 182 + A + GQ RD+L +L GY++ V + G ++ RG LLD+F + P RL Sbjct: 158 MRALAARVAVGQDFDRDSLARRLVRMGYQNSPLVEDVGTFSVRGDLLDVFSPLYDKPVRL 217 Query: 183 DFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP- 241 +FF D I+S+R FD SQRT++ ++ ++L+PA E S R + P Sbjct: 218 EFFGDTIESIRAFDPQSQRTVDALKEVDLVPAREVLLTDETRPRAESAARAVADRINLPT 277 Query: 242 ---EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF----PANTLLVNTGDL--ETSA 292 + +G G+E P FF + L +F + P ++ L + +A Sbjct: 278 IKLREQLDALREGLPGFGMEGLLPGFFEDGLSTVFDFLRDWSPEAPVIYLDDPLGQDRAA 337 Query: 293 ERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQ---LKTEHLPTKAA 349 + + L R + PP +L +++ ++++ ++ L Sbjct: 338 DTLWEE-LERSHGAAEARQELICPPLEHFLSREDVNQRMQSFRVLEGGGLSLAQTERPPV 396 Query: 350 NANLGFQKLPDLAVQAQ--QKAPLDALRKFLETFDGPVV---FSVESEGRREALGELLAR 404 + + G + A+ A ++ L L + LE + V + + + + L LL Sbjct: 397 HFSFGGTQDLREAILAHHGEEGALSPLVERLERWRELRVACVVACGTLSQADRLKRLLMD 456 Query: 405 -------IKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARR 457 + + L E S R +L G HGFVD LA++ + ++ G R RR Sbjct: 457 RNVMVKVHTEPLEDAVALYEPSIRA-HLFTGEVSHGFVDGPGGLAVLADEEIFGARARRR 515 Query: 458 RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDA 517 + S++ D +L G +VH + G+GRYAG+T +E G+ G++L+L YA Sbjct: 516 PKRSKKL---DAFGSGFGDLKEGDLIVHTDFGIGRYAGLTKMEVNGVPGDFLVLEYAGRD 572 Query: 518 KLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAA 577 K+Y+PV + LI +++GG L KLG +W + +++ E++ +AAELL I A R A Sbjct: 573 KIYLPVGRMRLIQKFSGGDPTQVQLDKLGTTSWEKTKKRVKEQLLKMAAELLQIAAARKA 632 Query: 578 KEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV 637 G AF + F F FE TPDQA+AI VL+DM +P MDRLVCGDVG+GKTEV Sbjct: 633 HPGHAFSAPDRYFAQFEADFEFEETPDQAKAIEDVLADMQKPEPMDRLVCGDVGYGKTEV 692 Query: 638 AMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILA 697 AMRAAF A + KQVAVLVPTT+LAQQH+ +F+ RFA++PV +E+IS + A E +IL Sbjct: 693 AMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKRFADYPVTVEVISGLKKAPEVREILK 752 Query: 698 EVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTAT 757 EGK+DILIGTHKLL +V FK+LGL+IVDEE RFGV+ KE +K R+ +D+LTLTAT Sbjct: 753 RAKEGKVDILIGTHKLLGGEVAFKELGLMIVDEEQRFGVKQKESLKKWRSQIDVLTLTAT 812 Query: 758 PIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYN 817 PIPRTL+M+MSG+RD+SIIATPP R A++TFV +Y+ VV+EAI RE+ RGGQV++++N Sbjct: 813 PIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMKYEDTVVKEAIEREVARGGQVFFVHN 872 Query: 818 DVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 877 VE++ +L LVP+ I + HGQM E +LE+VM F +++ VL+CT+IIE+GIDI Sbjct: 873 RVESLPSIETQLRALVPQVSIGVAHGQMGEGQLEKVMLAFTEKKYQVLLCTSIIESGIDI 932 Query: 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 +ANT+I+ RAD FGLAQL+QLRGRVGRS +AYA+LL P +A+T DAQ+RLE + + Sbjct: 933 SSANTMIVNRADQFGLAQLYQLRGRVGRSKERAYAYLLVPSRRAVTKDAQRRLEVLQNFT 992 Query: 938 DLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDL 997 +LGAGF++A+HDLEIRGAG LLG++QSG++ IGF +Y +LLE AV ++ Sbjct: 993 ELGAGFSIASHDLEIRGAGNLLGDKQSGAIAEIGFDMYAQLLEEAVAEMQGQ-----PPK 1047 Query: 998 TSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPA 1057 + +V L MP+L+PDD++ DV+ RL FYKR + A +E+ +++ EL+DR+G PD Sbjct: 1048 VQIEPDVTLPMPALIPDDYVSDVHQRLVFYKRFSQASHPDEVTDLRAELVDRYGEAPDEV 1107 Query: 1058 RTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPT 1117 L ++ L+ + L +R LE V+ ++ + GL+Q+ YRL Sbjct: 1108 DHLSELTLLKIDMRDLRLRGLEVGTTRLVVTLGADALLDGPKVAGLVQRSKGVYRLTPDM 1167 Query: 1118 RLK-FIQDLSERKTRIEWVRQFMRELEENAI 1147 +L + + I ++ +R+L A+ Sbjct: 1168 KLIARAPQGASGQDLISEAKKVLRDLSHCAL 1198 >UniRef50_A5V6G5 Transcription-repair coupling factor n=2 Tax=Sphingomonadaceae RepID=A5V6G5_SPHWW Length = 1195 Score = 1076 bits (2783), Expect = 0.0, Method: Composition-based stats. Identities = 448/1155 (38%), Positives = 641/1155 (55%), Gaps = 61/1155 (5%) Query: 39 AGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDIISSRLSTLYQ 97 G +V +A D Q L D F ++ V+ W+ LPYD SP S RL+TL+ Sbjct: 46 GGRLVFVAADDQAMQSLADAARFFAPELTVLTFPAWDCLPYDRASPALRATSERLATLHA 105 Query: 98 LPTMQRGVLI--VPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQ 155 L RG ++ VN + QRV + + G+R+ RD L L + GY D Sbjct: 106 LQGKPRGPVLVATTVNAVTQRVLTPFRIRQLVARLAPGERVDRDRLAAMLQANGYIRTDT 165 Query: 156 VMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAH 215 V E GEYA RG+L+DLFP G RLDFF DEI+S+R FD QRT+ V+ LLPA Sbjct: 166 VTEQGEYAVRGSLVDLFPAGEPHALRLDFFGDEIESVRQFDATDQRTIGPVDGFTLLPAS 225 Query: 216 EFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSY 275 E D+ I+ FR ++R+ F + IYQ VS G AG+++W PLF E L LF + Sbjct: 226 EALLDEETIKRFRGRYRERFGASATGDPIYQAVSDGRRLAGMDHWLPLF-EERLETLFDH 284 Query: 276 F-PANTLLVNTGDLETSAERFQA---DTLARFENRGVDPMRP-LLPPQSLWLRVDELFSE 330 P + +L G ++ + RF+A R R DP L P L+L DE + Sbjct: 285 LAPEDLILREAGSIKAAEARFEAIADYHANRVRARTTDPGSYRPLEPGELYLAADEWRTA 344 Query: 331 LKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQ-KAPLDALRKFLETFDG---PVV 386 + + P + P A +LG D A + Q DA+ + +E VV Sbjct: 345 IADRPIHLVTPFAEPESARVLDLGVDGARDFAPERTQGVNIYDAVIEHVEALGKAGKRVV 404 Query: 387 FSVESEGRREALGELLARIKIAP-QRIMRLDEA--------------------------- 418 + S G RE LLA + + A Sbjct: 405 LASYSTGSRERFAGLLAEHGLDRGDLVDDWQSAITLPLPLAGGGRGVGLPRKENDGAQAG 464 Query: 419 -----------SDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINP 467 L + +HGF +AL+ E D+LG+R+ RR++ + + Sbjct: 465 GPPPPPPASGRGGNMVALAVLPLDHGFTSGD--IALLTEQDMLGDRLVRRQKRKK---SA 519 Query: 468 DTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLH 527 D + LA L G VVH++HG+GRY G+T++ + + LTYA KLYVPV ++ Sbjct: 520 DAFLAELATLSPGDLVVHMDHGIGRYEGLTSIPVAKAPHDCVALTYAGGDKLYVPVENID 579 Query: 528 LISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 587 ++SRY G E L KLGG AW + + E++R++A EL+ A+RA + A + D Sbjct: 580 VLSRY-GAENEGVQLDKLGGVAWQARKARMKERIREIAGELIKTAAERALRPAEAIEPDS 638 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 Y F D FP++ T DQ +AI V+ D+ MDRLVCGDVGFGKTEVA+RAAF+A Sbjct: 639 -GYNEFVDRFPYQETEDQDRAIADVIEDLAAGKPMDRLVCGDVGFGKTEVALRAAFVAAL 697 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 QVA++ PTTLLA+QHY NF +RF PV I +SR SA E + +A+G IDI+ Sbjct: 698 GGMQVALICPTTLLARQHYRNFVERFHGMPVNIGHLSRLVSAGEAKRTKDGLADGSIDIV 757 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 IGTH LL + FK LGL+IVDEE RFGV HKER+KA++ +V +LTLTATPIPRTL MAM Sbjct: 758 IGTHALLAKGIAFKRLGLVIVDEEQRFGVTHKERLKALKTDVHMLTLTATPIPRTLQMAM 817 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 SG+R+LS+I TPP RLAV+T+V +D +V+REA+LRE RGGQ + + ++++ + Sbjct: 818 SGLRELSVIQTPPVDRLAVRTYVAPWDGVVIREALLREHYRGGQSFLVTPRIKDLPDIED 877 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 L + VPE + HGQM E+E M+ F+ ++F++LV TTIIE+G+DIP+ANT+I+ R Sbjct: 878 YLRKEVPEVSYVVAHGQMAAGEVEERMSAFYDKKFDILVSTTIIESGLDIPSANTLIVNR 937 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 AD FGLAQL+QLRGRVGRS +AYA+L T + +T A+KRL + +++ LGAGF +A+ Sbjct: 938 ADRFGLAQLYQLRGRVGRSKTRAYAYLTTG-DRGLTETAEKRLHILQNIDTLGAGFQIAS 996 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR 1007 HDL+IRGAG LLG+EQSG ++ +GF LY +LE A+ KAG + S ++ + Sbjct: 997 HDLDIRGAGNLLGDEQSGHIKEVGFELYQSMLEEAILDAKAGGLADTKR-ESFSPQINVD 1055 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 P L+P+D++PD++ R+ Y+R+ +T E+E ELIDRFG LP + LL + ++ Sbjct: 1056 APILIPEDYVPDLDLRMGLYRRMNEVETRAEIEAFAAELIDRFGKLPAATQNLLTVIEIK 1115 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE 1127 +K + K++ +G ++ F + + L+ + + RL ++L ++ E Sbjct: 1116 LNCRKACVAKIDTGPRGALVTFHNDDFPDLPGLLAYVDRLKDSARLRPDSKLVITRNWPE 1175 Query: 1128 RKTRIEWVRQFMREL 1142 R+ Q R L Sbjct: 1176 PSHRLNGALQLSRGL 1190 >UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lactobacillus delbrueckii subsp. bulgaricus RepID=Q1GBP3_LACDA Length = 1158 Score = 1074 bits (2777), Expect = 0.0, Method: Composition-based stats. Identities = 388/1134 (34%), Positives = 601/1134 (52%), Gaps = 20/1134 (1%) Query: 7 YTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM 66 + + LL + A A L+ + P++LI + A H+++S+ Sbjct: 16 FIAKTSRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERHNDLSRLLADD 75 Query: 67 VMNLADWE-TLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHG 125 + L + L + D +SSR+ L L + + GV+I L + + Sbjct: 76 DLELFVLDGNLATQTAVSSPDELSSRIQCLNLLLSGRPGVVIATPQGLQYPLSAPALFKK 135 Query: 126 HALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFF 185 G ++ L L+ AGY + V++ GE+A RG ++DL+P+ E P RL+FF Sbjct: 136 GQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRESPLRLEFF 195 Query: 186 DDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF--EVKRDPEH 243 DEID+++ FD+ SQR+LEE+ + A + ++ + E E Sbjct: 196 GDEIDTIKTFDLTSQRSLEELPEATVPAASDHVFTAEDLDRAGRELAGDLPKEAAASLEI 255 Query: 244 IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPA-NTLLVNTGDLETSAERFQADTLAR 302 + ++ G LP + S+ L Y PA LL N L + + Sbjct: 256 AQEALANGQLPDDCNRYLDYLLSKSF-SLLDYLPAKGLLLFNDWQLIAESVKNMGAINDD 314 Query: 303 FENRGVDPMRPLLPPQSLWLRVDELF-SELKNWPRVQLKTEHLPTKAANANLGFQKLPDL 361 + + + + Q L L D + ++ + V L + +L + Sbjct: 315 YLASQIAS-KMMTSRQKLRLDFDAVLKADCHHRLYVSLMAHSMGRLRFGQHLAWDSREPQ 373 Query: 362 AVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR 421 +Q + L + + VV V S + E I + D + Sbjct: 374 QFFSQMELLKTELDSYAKK-GQTVVLQVSSRRQAEEFNRSCHDYDI-YLPLAEADGLKEG 431 Query: 422 GRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQ 481 L+IG GFV +L + E +L + +R + +T+ +R+ EL G Sbjct: 432 RAQLVIGGYASGFVLPDSDLVYLTEKELFNQ--NKRSKKRIKTLENAQRLRSYTELKPGD 489 Query: 482 PVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541 VVH+ HG+GR+ G+ TLE G +Y+ +TY +L+VP L L+ +Y + Sbjct: 490 YVVHVNHGIGRFEGIQTLETDGKKRDYITITYQKGDQLFVPDDQLSLVQKYVASEGKQPH 549 Query: 542 LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFET 601 ++KLGG W++ +++ A +V D+A +L+++YA+R A++GFAF D F +FP+E Sbjct: 550 INKLGGSEWAKTKKRVAARVEDIADDLIELYAKREAEKGFAFSPDGSDQAAFEAAFPYEP 609 Query: 602 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLL 661 TPDQ +A + +DM + MDRL+ GDVGFGKTEVAMRAAF A+ + KQVA LVPTT+L Sbjct: 610 TPDQLRATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTIL 669 Query: 662 AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 721 AQQHY +DRF +PV I SRF+ E +I+A + +G ID+++GTH++L DV+ K Sbjct: 670 AQQHYQTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQLK 729 Query: 722 DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781 DLGLLI+DEE RFGV HKE++K ++ N+D+LTLTATPIPRTL+M+M G+RDLS++ TPP Sbjct: 730 DLGLLIIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQ 789 Query: 782 RRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 841 R ++T+V E V+EA RE+ RGGQV+YL+N V +I++ RL +L+PEARIA Sbjct: 790 NRYPIQTYVLEQLPGTVKEACQREMQRGGQVFYLHNRVGDIEETVARLEQLLPEARIAYA 849 Query: 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901 HGQM E +LE +++ F + F++LV TTIIETGID+P NT+IIE ADH+GL+QL+QLRG Sbjct: 850 HGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLYQLRG 909 Query: 902 RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961 R+GRS AYA+ L K +T +KRL+AI +LGAGF +A DL IRGAG +LG Sbjct: 910 RIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLSIRGAGNMLGA 969 Query: 962 EQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVN 1021 +Q G ++++G+ LY ++L +A+ + + + EV+L + + +P+D+I D Sbjct: 970 QQHGFIDSVGYDLYSQMLADAIKERQGKK-----PVKKSNAEVDLGLEAYIPEDYIADQE 1024 Query: 1022 TRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGN 1081 ++ FYK+I + E+I+ EL+DRFG P LL++A L+ I L Sbjct: 1025 QKIEFYKKIKGIGSLQNREDIEDELLDRFGDYPAAVENLLNVASLKASCDLAQILTLVKE 1084 Query: 1082 EKGGVIEFAEKNHVNPAW--LIGLLQ--KQPQHYRLDGPTRLKFIQDLSERKTR 1131 + + F++ + L+ L RL L ++ TR Sbjct: 1085 KAQIRVIFSDSGSREMEGPNIFKALEHVSWKARIALGAQNRLVVTLLLPDKLTR 1138 >UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NPX2_9DELT Length = 1162 Score = 1072 bits (2772), Expect = 0.0, Method: Composition-based stats. Identities = 433/1168 (37%), Positives = 641/1168 (54%), Gaps = 47/1168 (4%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLA 71 + E + + G A A LV + A P++ + PD + A +L +++ F+D V++ Sbjct: 10 QCKEPLDIYGVRGGAVAWLVGRLGG-LARPLLCVCPDDEQARQLATDLALFSDLPVVHYP 68 Query: 72 DWETLPYDSFSPHQDIISSRLSTLYQLPTMQ-RGVLIVPVNTLMQRVCPHSFLHGHALVM 130 D E PY + P ++RL+ L+ + +++ L R P L A ++ Sbjct: 69 DLEVAPYAALRPDPGSRAARLAALFAISDAASPFIMVAAGRALSARTLPPERLQALAELV 128 Query: 131 KKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEID 190 +G+ L +L + GY V V E GEY+ RG ++D+FP G E P RLDFF D ++ Sbjct: 129 IRGEECDAAELTGRLAAGGYERVALVQEVGEYSIRGGIIDIFPPGQEYPLRLDFFGDTVE 188 Query: 191 SLRVFDVDSQRTLEEVEAINLLPAHEFPTD------KAAIELFRSQWRDTFEVKRDPEHI 244 +R FD SQR++ E+ LLPA + + A+ QW + + R P Sbjct: 189 EIRRFDPISQRSVGELAEAILLPASDCLYPAADSPAQQALLERHRQWAASLQWDRQPSRQ 248 Query: 245 YQQVSKGTLP-AGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAE-RFQADTLAR 302 ++ + P AG +++ PL L PL +Y PANTL++ + +A Sbjct: 249 LEECLRQHRPFAGDQFFLPLLEPAALSPL-AYLPANTLIIQVDHPRLLQNLALHRERIAS 307 Query: 303 FENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLA 362 +P LPP L+L ++L + ++ L AN FQ Sbjct: 308 NYQELTATAQPALPPDELFLSAEQLHGHFEQAAGARIFP--LAPGEANGQRVFQIEAGNH 365 Query: 363 VQAQQK-----------APLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQR 411 V +Q+ APL K V+ + + + ELLA + Sbjct: 366 VLLKQQLDLKRREEGLLAPLAQQIKQWRQQGERVLLACRTPRHAAKMAELLAGHGVTDGD 425 Query: 412 IMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLI 471 R ++ GF + E +L G+R R + ++ P T I Sbjct: 426 HCR----------ILKQPLSSGFDLPSEGEHWLSEGELFGDR--RLESAAAKSRAPATKI 473 Query: 472 RNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISR 531 + E++ G PVVH HG+G Y G+ +E GIT +YL + Y KLY+PV L+ + + Sbjct: 474 VSHDEINPGDPVVHRRHGIGIYRGLVPIELDGITNDYLEIHYRGADKLYIPVDQLNSVGK 533 Query: 532 YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 591 Y G A++ L KLG ++W RQK + V VA +LL +YA+R EG F E Y Sbjct: 534 YKGLADQEPTLDKLGDNSWLATRQKVKKAVWQVARDLLKLYAKRQLAEGNRFSPPGEMYH 593 Query: 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ 651 +SFP++ TP Q +AI V+ D+C MDRLVCGDVG+GKTEVA+RAAF V++ Q Sbjct: 594 ELEESFPYDETPGQLKAIGEVIDDLCSSKPMDRLVCGDVGYGKTEVAVRAAFKVVEDGGQ 653 Query: 652 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 711 VAVLVPTT+LA+QH FR+R A +PVRI+ ++RFRS+ EQ +++A++A KIDI+IGTH Sbjct: 654 VAVLVPTTVLAEQHAATFRERLAGFPVRIDSLNRFRSSAEQKRLVADLAAAKIDIVIGTH 713 Query: 712 KLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR 771 +LL +DVKF+ LGLLIVDEEHRFGV HKE+IK +R+ VD+LTLTATPIPRTL +++ G+R Sbjct: 714 RLLSADVKFRRLGLLIVDEEHRFGVSHKEKIKKLRSGVDVLTLTATPIPRTLQLSLLGVR 773 Query: 772 DLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 831 DLS+I++PP R AVKTF+ +D +V++EAI+RE+ R GQV+ ++N V +I + A R + Sbjct: 774 DLSVISSPPRLRRAVKTFIARHDDLVIKEAIMRELGRDGQVFLVHNRVSSIHEVATRAQQ 833 Query: 832 LVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 LVP A++A+ HGQM R+LE +M F + NVLVCTTIIE+G+DIP ANTIII RAD Sbjct: 834 LVPTAQVAVAHGQMPARQLEEIMVRFVRREINVLVCTTIIESGLDIPDANTIIITRADRL 893 Query: 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLE 951 GLA+++QLRGRVGRS QAYA+LL P + +A+ RL+A+ +LG GF LA DL+ Sbjct: 894 GLAEIYQLRGRVGRSRQQAYAYLLVPALDDLAGEARHRLQALMDYNELGGGFKLALSDLQ 953 Query: 952 IRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQT--------- 1002 IRG G +LGE QSG++ +G+ +Y++LL+ V LK E + +T Sbjct: 954 IRGGGNILGESQSGNIAAVGYDMYLDLLQKTVLDLKRRLREGEETSSDPETMAEVGEEFE 1013 Query: 1003 -EVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLL 1061 E++L + + +P ++ DVN R Y+RI +A+ + L +I+ E DRFG LP L Sbjct: 1014 PEIKLAIAAHIPASYVDDVNQRYLCYRRITAAEDDATLADIRDEFADRFGPLPPETANLF 1073 Query: 1062 DIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRL-K 1120 +I L+ + +L I K+E + FA V P L L+ + + RL +L K Sbjct: 1074 EIISLKNRLAELKISKIEQGPTALALFFAPSTPVPPERLTELVAQGKKGMRLTPEGKLIK 1133 Query: 1121 FIQDLSERKTRIEWVRQFMRELEENAIA 1148 + +++ + L NAI+ Sbjct: 1134 PLPANPSPTVVFNEIKKLLHALRGNAIS 1161 >UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S0H3_FINM2 Length = 1168 Score = 1071 bits (2771), Expect = 0.0, Method: Composition-based stats. Identities = 363/1126 (32%), Positives = 628/1126 (55%), Gaps = 29/1126 (2%) Query: 26 ACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQ 85 A A+ V ++ P+V++ D A L + ++ + + E Y++ S Sbjct: 37 AFASFVYATSKNINKPLVVVVEDNMRARNLTEYLNDIEENICEFFPSRELNFYNAKSLDD 96 Query: 86 DIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 + R++ L++L ++ +++ + L +++ S +A +K ++ + L+ +L Sbjct: 97 NAEDQRVNVLFKLLNNEKFIIVTTFDALTKKITKKSVAKKYAFTIKDTDLINLEELQEKL 156 Query: 146 DSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEE 205 + Y VD + G++A RG ++D+FP+ S P R++ FDDEIDS+R F+V +QR++E+ Sbjct: 157 RALKYERVDTIESKGQFAIRGGIVDIFPVHSRFPVRIELFDDEIDSMRFFEVSTQRSIED 216 Query: 206 VEAINLLPAHEFPTDKAAIELFRSQWRDTFE--------------VKRDPEHIYQQVSKG 251 + ++++ E + + E + + + VK E + + + Sbjct: 217 CKFVDIISCSELIIEDSKKESIINSIQKNLDKRVDHPIFGENVDNVKDKFEKLMEYIRSD 276 Query: 252 TLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFEN--RGVD 309 I+ + +F YF +T+++ DL + ++ E+ V+ Sbjct: 277 LEYE-IDLVSCFLTKKDYDTVFDYFADDTIMM-IEDLSRCYDIYKEKEKRFLEDFVYLVE 334 Query: 310 PMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQ--KLPDLAVQAQQ 367 L + + + ++ +K V + + T+ +N +Q L Sbjct: 335 KGEVLSKHEQSLIPISDILKFIKAKTSVNITSLVKRTRLIESNAMYQLKTLEAPNFNKNI 394 Query: 368 KAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMI 427 + ++ ++ +VF+ E R+ L +L I + + L+ Sbjct: 395 DSLVENIKSNSLRGFKQIVFAANVE-RKNMLKDLFLTNGIPTLEAEDYNANIKSSQVLIT 453 Query: 428 -GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 +GF +I ++ G ++ + ++ + I N ++L+I VVH Sbjct: 454 QKNLPNGFEIKDPKYLIITYKEIFGRE--KQLRKRKKKKSTGQDIVNYSDLNIDDYVVHE 511 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAE-ENAPLHKL 545 HG+G+Y G+ ++ GI +Y+++ Y + +L +P ++L+ +Y GG + L+KL Sbjct: 512 NHGIGQYKGIEKIDVNGIQKDYIVIQYKANDRLMIPTDQMNLVQKYIGGGNVKKPSLNKL 571 Query: 546 GGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQ 605 G+ W++A+QKA + V ++A +L+++Y++RA +G+ F D E + F DSFP+E T Q Sbjct: 572 SGNDWAKAKQKAKKSVDEMADDLVELYSKRAKLKGYQFSQDTEWQREFEDSFPYEETDSQ 631 Query: 606 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 665 ++I + +DM MDRL+CGDVG+GKTEVA+RA F A+ + KQVA LVPTT+LAQQH Sbjct: 632 VRSIEEIKADMESDRPMDRLLCGDVGYGKTEVAIRACFKAIMDGKQVAFLVPTTILAQQH 691 Query: 666 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 725 ++ ++RF ++P+R+EM+SRF S Q QI+ +V G +D+L+GTH++L ++KFKDLGL Sbjct: 692 FNTIKERFRDYPIRVEMMSRFVSPARQKQIMKDVQRGLVDLLVGTHRILSKNLKFKDLGL 751 Query: 726 LIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785 L++DEE RFGVRHKE++K+MR NVD+LTL+ATPIPRTL M ++G+RD+S++ PP R Sbjct: 752 LVIDEEQRFGVRHKEKLKSMRENVDVLTLSATPIPRTLQMGLTGIRDMSLLEEPPEDRTP 811 Query: 786 VKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQM 845 + T+V EY+ ++R+AI+RE+ RGGQ+Y++YN +E+I + +L ELVPE IAI HG+M Sbjct: 812 ISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIEDIDQMEFKLKELVPELNIAIAHGRM 871 Query: 846 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 905 E+ELE VM DF +++L+CTTIIETG+DI NT+II AD GL+QL+QL+GR+GR Sbjct: 872 NEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVNTMIIYNADKMGLSQLYQLKGRIGR 931 Query: 906 SHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 S ++A+ K++T ++KRL AI + G+GF +A DLE+RGAG LLGE Q G Sbjct: 932 SDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGSGFKIAMRDLELRGAGNLLGESQHG 991 Query: 966 SMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLS 1025 + IG+ LY++LLE AV K +E+++ +P+D+I + T++ Sbjct: 992 HIAKIGYDLYVKLLEQAVREAKGE----TISENKNTVIIEIKVNGYIPEDYISENETKID 1047 Query: 1026 FYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGG 1085 YK+IAS + E++ EI ELIDRFG +P P ++D++ ++ +L I ++ + Sbjct: 1048 IYKKIASIQDEDDYSEIIDELIDRFGDVPKPIVNIMDVSIIKAFCARLSIESIKEIKGEL 1107 Query: 1086 VIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTR 1131 ++F+ + ++ L L + + R D + K I ++ R Sbjct: 1108 FLQFSSPDKISLEKLKYLTENYKKEMRFDLSEKPKIILGFEDKNLR 1153 >UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GD25_9FIRM Length = 1185 Score = 1070 bits (2768), Expect = 0.0, Method: Composition-based stats. Identities = 392/1162 (33%), Positives = 603/1162 (51%), Gaps = 51/1162 (4%) Query: 21 ELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDS 80 A A L+ + + +++ D + A +L +E+ FT + V + L Y S Sbjct: 36 GCIDPAKAQLIYGLGAGYLVR-LVVTRDEKRARQLAEELEFFT-ENVFYYPAKDLLFYQS 93 Query: 81 FSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDA 140 + R+ + L + V++ + LM ++ P S + + + +G + + Sbjct: 94 DIRSNVLTRQRMQAVEALRGKEETVIVTTWSALMNKLPPLSSYDKNIIEVAQGDDMPVEK 153 Query: 141 LRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ 200 R L +GY V +V GE+A RG ++D+FP+ P R++ + DE+D++R+FD DSQ Sbjct: 154 WRLALIGSGYEPVARVEHPGEFAVRGGIIDVFPLTDANPIRIELWGDEVDTMRLFDPDSQ 213 Query: 201 RTL---EEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE-----------------VKRD 240 +L + ++ I ++P+ E + R + +K Sbjct: 214 LSLSDEDPLQTIRIVPSAEIVLSPEELRRGLEGIRADADRVCAGYRESFKTEEAARIKAA 273 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSA------ER 294 + I + V G +E F + L L Y P + ++ G E A E Sbjct: 274 ADQIIEDVEGGFGSQQVESHLTYFTDQTL-SLIDYIPEDGVIFLDGFQELMASGKVIMEE 332 Query: 295 FQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLG 354 F R E + P + + + L ++L+ V L + Sbjct: 333 FSDSMTRRLEEGYILPGQM-----QMLYDNESLTAKLRGRRGVLLSALEGRDQGLEVREH 387 Query: 355 FQKL--PDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRI 412 F + L LR++ + +V+ S R L + L + + Sbjct: 388 FHIRIRQGSVYNNSYELLLKDLREY-KKNRRKLVYVGNSRTRARRLADDLLQENLNVFYT 446 Query: 413 MRLD-EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLI 471 + E + + G+ G+ T L+ E DL R+R+ R I Sbjct: 447 EDPEHEVKEAEIMVTRGSLSAGYELTDAGFVLLTEEDLF--GGRRKRRKRGRRHREGEAI 504 Query: 472 RNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISR 531 + A+LH G V+H HG+G Y GM +E +T +Y+ + YA+ LY+ S + L+ + Sbjct: 505 ASFAQLHEGDYVIHENHGLGIYRGMEKIEVDQVTKDYIKIEYADSGILYILASQMDLLQK 564 Query: 532 YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 591 YAG L+ LG WSR + + V VA EL+++YA R +G+A+ D + Sbjct: 565 YAGADARRPRLNSLGSQEWSRTKSRVKRAVESVARELVELYAVRQEDKGYAYGPDTVWQR 624 Query: 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ 651 F ++FP+E T Q +AI AV DM P MDRL+CGDVGFGKTE+A+RAAF A KQ Sbjct: 625 EFEEAFPYEETEGQLEAIEAVKKDMESPKIMDRLICGDVGFGKTEIALRAAFKAAQEGKQ 684 Query: 652 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 711 V LVPTT+LAQQHYD F R A +P+++ ++ RFR+ +Q Q ++E+A G++DI+IGTH Sbjct: 685 VVYLVPTTILAQQHYDTFVQRMAPYPIKVGLLCRFRNKTQQAQTVSELASGRVDIVIGTH 744 Query: 712 KLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR 771 + L DV F+DLGLLI+DEE RFGVRHKE+IK M+ NVD+L+L+ATPIPRTL+M++ G+R Sbjct: 745 RALSRDVVFRDLGLLIIDEEQRFGVRHKEKIKQMKKNVDVLSLSATPIPRTLHMSLVGIR 804 Query: 772 DLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 831 D+SI+ P R ++TFV E++ ++REA+LRE+ RGGQ+YY++N V I RL + Sbjct: 805 DMSILDEAPMERTPIQTFVFEHNDEMIREAVLREMARGGQIYYVFNRVAQIADMTARLQK 864 Query: 832 LVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 L+PEA +A HG+M + LE +M DF ++LV TTIIE G+DI NTIII+ AD+ Sbjct: 865 LLPEAHVAYAHGRMSQTRLENIMVDFIDGEIDLLVSTTIIEIGLDISNVNTIIIDDADNM 924 Query: 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLE 951 GL+QL+QLRGRVGRS+ AYA+ + K + A+KRL AI DLG+GF +A DLE Sbjct: 925 GLSQLYQLRGRVGRSNRTAYAFFMYRRGKLLKEVAEKRLLAIKEFSDLGSGFKIAMRDLE 984 Query: 952 IRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSL 1011 IRGAG +LGE QSG ME++G+ LY ++L AV K E +T V+L M + Sbjct: 985 IRGAGNVLGESQSGHMESVGYDLYCKMLGEAVRQEKGE-----EIYEPFETSVDLDMDAY 1039 Query: 1012 LPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQ 1071 LP+ ++ D R+ YKRIA ++E + + + ELIDRFG + LL IA + +A Sbjct: 1040 LPESYVADAGQRMEIYKRIADIRSEEDHDAMLEELIDRFGEPARAVQNLLWIALFKARAH 1099 Query: 1072 KLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTR-----LKFIQDLS 1126 + IR + + + +NPA + L+ + + + L F ++ Sbjct: 1100 RAWIRDIRQKGWQVSLTLFHQAPINPAVIPQLISRYSPYLHFTADPQEPRLELDFGRNSR 1159 Query: 1127 ERKTRI-EWVRQFMRELEENAI 1147 K +I E +R F+ E E A+ Sbjct: 1160 MEKRQIPEALRSFVEEFRELAV 1181 >UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5KKI8_9FIRM Length = 1115 Score = 1066 bits (2758), Expect = 0.0, Method: Composition-based stats. Identities = 392/1137 (34%), Positives = 593/1137 (52%), Gaps = 66/1137 (5%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 + L++ I +++ + + A + ++E F + + L Y Sbjct: 30 ISGCVNTQKIHLLSGIGSGCGYK-LVVFSNEEKAKKAYEEYLLF-GEETYLYPARDLLFY 87 Query: 79 DSFSPHQDIISSRLSTLYQLPTM---QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 + + + + R+ L + + +I ++ + + + + + + Sbjct: 88 YADIKGKTLTNRRMEVLRAIAEKKKEEPVTVITTMDAFLDGIISPDEIQKNRIHITGEDT 147 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 + L L + GY Q+ G++A RG ++D+FP+ E+P R++ + DEIDS+R+F Sbjct: 148 VDLTKLEQDLTALGYERESQIEAPGQFAVRGGIIDVFPLAEEMPVRIELWGDEIDSIRMF 207 Query: 196 DVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPA 255 D SQR++E + I + PA E Sbjct: 208 DAKSQRSIENISEITIYPASE--------------------------------------- 228 Query: 256 GIEYWQPLFFSEPLPPLFSYFPANTLLVNTGD---LETSAERFQADTLARFENRGVDPMR 312 F + L YFP N L+ + L+ +AE +A+ +NR M+ Sbjct: 229 ------NCFGNNGLVSFLKYFPENETLLFYDEPHRLQETAETVEAEYTESLKNRADAGMK 282 Query: 313 PLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQ-KLPDLAVQAQQKAPL 371 + + ++ SE+ + + L T + + + L Sbjct: 283 EEGEEELRVFQTKDIISEMNRYSGIGLTTLESKCGLFKVRSVYTVQAKGVNPYNNSFELL 342 Query: 372 DALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD-EASDRGRYLMIGAA 430 K L+ VV S R + L E L ++ + E G A Sbjct: 343 TRDLKRLKRNGYRVVLLSGSRTRAKRLAEDLRDYDLSSFYSEDMQREVKPGEIMAAYGYA 402 Query: 431 EHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 G+ + +I ESD+ G + +R I++ AEL G VVH HG+ Sbjct: 403 SEGYEYPMLKFVVISESDIFGRKKK----KKKRKKYEGQRIQDFAELKPGDYVVHENHGI 458 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW 550 G Y G+ +E I +Y+ + YA LY+PV+ + LI +YAG + L+KLG W Sbjct: 459 GVYKGIEKIEVEKIVKDYMKIVYAEGGVLYIPVAQMDLIQKYAGADAKKPRLNKLGTIQW 518 Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 + + + + V+ VA +L+++YA R EGF + D + F + FPFE T DQ QAI Sbjct: 519 GKTKSQVKKAVQIVAKDLVELYAVRQQSEGFVYGPDTVWQKEFEEMFPFEETDDQLQAIE 578 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 DM MDRL+CGDVG+GKTE+A+RAAF AV KQV LVPTT+LAQQHY+ F Sbjct: 579 DTKHDMESKKIMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVVCLVPTTILAQQHYNTFV 638 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 R +PVRI+++ RFRSA EQ + + + +G +DIL+GTH++L DV FKDLGLLI+DE Sbjct: 639 QRLKEFPVRIDLLCRFRSAAEQKKTIEDTKKGFVDILVGTHRVLSKDVVFKDLGLLIIDE 698 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 E RFGV HKE+IK ++ N+D+LTLTATPIPRTL+M++ G+RD+S++ P R+ ++T+V Sbjct: 699 EQRFGVTHKEKIKKLKENIDVLTLTATPIPRTLHMSLIGIRDMSVLEEAPNERMPIQTYV 758 Query: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 EY+ +VREAI RE+ R GQVYY+YN V +I A R+ LVP+A +A HGQM+EREL Sbjct: 759 MEYNDEMVREAITRELARDGQVYYVYNRVNDIADVAGRIQSLVPDANVAFAHGQMKEREL 818 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 E +M DF + +VLV TTIIETG+DIP ANT+II+ AD FGL+QL+QLRGRVGRS+ A Sbjct: 819 EDIMYDFINGDIDVLVSTTIIETGLDIPNANTMIIQDADRFGLSQLYQLRGRVGRSNRMA 878 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 YA+LL K + A+KRL AI DLG+G +A DLEIRGAG LLGE QSG ME + Sbjct: 879 YAFLLYQRDKLLKEVAEKRLSAIREFTDLGSGIKIAMRDLEIRGAGNLLGEAQSGHMEAV 938 Query: 971 GFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI 1030 G+ LY ++L AV LK G E + T ++L + + +P+ +I + +L YKRI Sbjct: 939 GYDLYCKMLNEAVRQLKGGPEA-----ETFTTLIDLNVDAYIPEYYIKNEYQKLDIYKRI 993 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFA 1090 A+ ++E ELE++ ELIDRFG +P + LL IA L+ A + + +E + Sbjct: 994 AAIESEEELEDMTEELIDRFGDIPKKVQQLLVIASLKSLAHSVYVTAIEQKGEEIRFTMY 1053 Query: 1091 EKNHVNPAWLIGLLQ--KQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEEN 1145 EK ++P+ + L K +R + P + + +K+ E V +R + E+ Sbjct: 1054 EKAKIDPSGIPKFLDSYKNDLIFRAEEPPYFLYCRKGRNKKSNTENVLDTVRRILED 1110 >UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LNZ8_SYNFM Length = 1189 Score = 1066 bits (2758), Expect = 0.0, Method: Composition-based stats. Identities = 418/1163 (35%), Positives = 650/1163 (55%), Gaps = 43/1163 (3%) Query: 14 GEQRLLGELTGAAC---ATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN- 69 GE R L GA A L+A P +L+ P + A + I+ F + Sbjct: 31 GESRESAVLRGAQKPAVAYLLARGMATLKRPFLLVTPTDREAESFAETIAFFAGNDLHRQ 90 Query: 70 -LADWE---TLPYDSFSPHQ-----DIISSRLSTLYQL-PTMQRGVLIVPVNTLMQRVCP 119 + LP S Q ++ R+ TL+ ++ V + LM+R+ Sbjct: 91 DVPADRRVWCLPSRSGQKSQSLGKMATMARRMETLHAFRASIGSNVFVTSAVALMERLLL 150 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 L H+ KG+ + + L L GY V V E+G+++ RG +LD++ P Sbjct: 151 PEVLLAHSDYRVKGETVELETLCATLVERGYYRVSLVEEYGDFSIRGGVLDVYAPLYRWP 210 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQ-WRDTFEVK 238 RL+FF DE++S+R+F +QR++ +E LLPA E D +A E R + D E + Sbjct: 211 LRLEFFGDELESIRLFHPSTQRSMGILEDAVLLPASEVILDVSARERAREAVYADVREGR 270 Query: 239 RDPEHI---YQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLE--TSAE 293 P ++ +G E +F+ E +++Y T++V + L+ E Sbjct: 271 LTPAAGNVWLDKLQEGHQFGAFESIMSVFY-EKTVTVWNYLDPATVVVWSDALQIRKIME 329 Query: 294 RFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL-----KTEHLPTKA 348 F +R N P PP L + L ++ +++ ++ + TE Sbjct: 330 EFFLHA-SRDWNENHSPHEWRRPPSELLEIPERLIADGESFQQLIVNSLSGGTEPRAVFD 388 Query: 349 ANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFS---VESEGRREALGELLARI 405 + Q + A+++ L+ L + + + + S + + L ELL Sbjct: 389 MGTSGHEQLALSVRAHAEKERLLEPLARQFQRWREEGILSFLVCRQKEQAGRLSELLEGH 448 Query: 406 KIAPQRIM---RLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR 462 + + +++G+ + GFV LA++ E ++ G+R RR S Sbjct: 449 GTDTVLTLLPFGAESYEAPAVKVIVGSLDRGFVWPAERLAVVAEEEIFGKRTRRRSGKS- 507 Query: 463 RTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVP 522 + + +LHIG VVH++HG+G Y + L GI ++L+L Y + +LYVP Sbjct: 508 ---VSGLFLSSFQDLHIGDFVVHVDHGIGVYKELVHLAVRGIESDFLLLEYQDGDRLYVP 564 Query: 523 VSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582 V L + +Y G + + KLGG +W A++KA E VA ELL +YA+R EGF Sbjct: 565 VDKLQKVQKYLGLEGQQPKIDKLGGRSWETAKKKALESAERVAEELLSLYAKRQIGEGFR 624 Query: 583 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 642 F +Q F +F +E TPDQ +AI+ VL DM MDRL+CGDVG+GKTEVA+RAA Sbjct: 625 FSPPDSYFQKFEATFSYEETPDQMRAIDDVLDDMASRRPMDRLICGDVGYGKTEVALRAA 684 Query: 643 FLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 702 F AV + KQVA+LVPTT+LA+QHY +F +RF +PV +E +SRF++ +QT +L + G Sbjct: 685 FKAVMDGKQVAMLVPTTVLAEQHYQSFTERFEGFPVVVETLSRFKTPAQQTLVLKGLKNG 744 Query: 703 KIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRT 762 +D+++GTH+LLQSDV F+DLGLL++DEEHRFGV+HKER+K MR +VD+LTLTATPIPRT Sbjct: 745 TVDVVVGTHRLLQSDVAFRDLGLLVIDEEHRFGVKHKERMKEMRVSVDVLTLTATPIPRT 804 Query: 763 LNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENI 822 L+MA++G+RDLS I TPP R A++TF+ +YD +REA+ RE+ R GQV++++N V++I Sbjct: 805 LHMALAGIRDLSTIETPPQDRHAIETFICKYDEFTIREAVYRELRRSGQVFFVHNHVQSI 864 Query: 823 QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 + A + L+PEA+IA+ HGQM+ER+LE+VM DF ++ +VLVCTTIIE+G+DIP ANT Sbjct: 865 YQTANAIGRLIPEAKIAVAHGQMKERDLEKVMLDFIRRKIDVLVCTTIIESGLDIPAANT 924 Query: 883 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAG 942 III RAD FGLAQ++QLRGRVGRS QA+A+LL P ++ DAQKRL A+ +LGAG Sbjct: 925 IIINRADKFGLAQIYQLRGRVGRSSEQAFAYLLIPGEHLISRDAQKRLRALLDFSELGAG 984 Query: 943 FALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQT 1002 F +A +DL+IRG G +LG QSG + +G+ LY+ELLE + +K + S Sbjct: 985 FKIALNDLQIRGGGTILGSSQSGHIAAVGYELYLELLEKTIKEMKGEE----RETESIDP 1040 Query: 1003 EVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLD 1062 E+ + + + LP+ FIPD + RL YKR+A+ ++++ E DR+G P+ AR L+ Sbjct: 1041 EINVPLSAFLPETFIPDKDQRLIAYKRLATLAEPAAVDDLAGEWRDRYGPFPEGARNLVM 1100 Query: 1063 IARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFI 1122 +A++R ++LG+ +L+ ++ + FA + V+ + L ++ + ++ R+K Sbjct: 1101 LAKMRLLFKRLGVVRLDRDKDFFSLHFAPRVSVD--RVAAFLGEKKCTFVVETDRRVKVE 1158 Query: 1123 QDLSERKTRIEWVRQFMRELEEN 1145 ++ +++ ++EL E Sbjct: 1159 IWGRHLAQQVLRLKRILQELAER 1181 >UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G278_ABIDE Length = 1184 Score = 1065 bits (2755), Expect = 0.0, Method: Composition-based stats. Identities = 390/1140 (34%), Positives = 603/1140 (52%), Gaps = 33/1140 (2%) Query: 18 LLGELTGAACATLVAEIAE-RHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETL 76 L+ A + ++ +++ V+I D A + ++ + + V+ + + Sbjct: 29 LITGCMDAEKSNIIETLSKGTSKRHRVIITYDEIRAGEIQTDMKLYDKKAVIY-PAKDIM 87 Query: 77 PYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 + + IIS RL L +L + +I+ + + RV P S++ + + Sbjct: 88 FFAADVHGNAIISGRLEVLKRLIEDKPSTIILSLEAGLDRVLPLSYVKEKIVKLSVRDSF 147 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 L +L GY QV G++A RG + D+FP+ E P+RL+F+ DEID++R FD Sbjct: 148 DITELARRLSELGYEKTSQVSGKGQFAVRGDIFDIFPLTEETPFRLEFWGDEIDTIRAFD 207 Query: 197 VDSQRTLEEVEAINLLPAHEFPTDKAA---------------IELFRSQWRDTFEVKRDP 241 V+SQR++E VE + + PA E D+ + FR++ + + + Sbjct: 208 VESQRSIENVEELLVYPATEIIIDEERKLAGLKKLNKEKEEVYKKFRAEMKTEEAARINS 267 Query: 242 --EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQA 297 E + GI+ + FF E F YF + +E + Sbjct: 268 VVEEFKDNLEIYGGSFGIDSYINYFFDE-TETFFDYFNEEDIFFIDEPIRIEEKGKAVSF 326 Query: 298 DTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQ- 356 + NR ++W ++ ++L++ V L T A F Sbjct: 327 EWRESMTNRLTKGYILSKQADTIW-DYKKVLAKLESKSTVLLSLLETRTGDIKAKQRFDV 385 Query: 357 -KLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRL 415 + + L ++ + VV S+ R E L E ++ + Sbjct: 386 LSRNVNPYNNSFETLIKDLTRYKKE-GYKVVVVSSSKVRAERLAEDFRERELMANYLSTD 444 Query: 416 DEASDRGRYLMI-GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNL 474 + G + I G GF A+I ESD+ G + + ++ I + Sbjct: 445 ERVPVSGEVVTIQGNLRRGFEYPSIKFAIISESDIFGAEKKKTNRKKKKID--GASIASF 502 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG 534 +ELH G V+H HG+G Y G+ G+T +Y+ + Y+ D ++VP ++L ++ +Y+ Sbjct: 503 SELHEGDYVIHENHGIGVYRGIEQFTVEGVTKDYVKVDYSGDVSIFVPTTNLDVLQKYSS 562 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 + K+GG AW + + K + + ++A +L+++YA+R ++GF + D Q F Sbjct: 563 ANGAKPKIDKIGGQAWKKTKSKVRQSISEIARDLVELYAKRQQEQGFRYGKDTVWQQEFE 622 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 + FP++ T DQ AI V +DM MDRLVCGDVGFGKTEVA+RAAF AV KQV + Sbjct: 623 EMFPYDETDDQLNAIKDVKADMESIKIMDRLVCGDVGFGKTEVAIRAAFKAVSEGKQVVM 682 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 LVPTT+LA QHY F R N+P+ +E +SRF+SA E +I ++ G IDI+IGTHK+L Sbjct: 683 LVPTTILAGQHYTTFSKRMQNFPITVEFLSRFKSAAETKKIKEKLKAGLIDIVIGTHKVL 742 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 +++K+KDLGLLI+DEE RFGV HKE+IK +R NVD+LTL+ATPIPRTL+M++ G+RD+S Sbjct: 743 SAEIKYKDLGLLIIDEEQRFGVSHKEKIKKLRENVDVLTLSATPIPRTLHMSLVGIRDMS 802 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 ++ PP R+ ++T+V E+D ++REAI REI R GQVYY+YN V I + A +LAEL+P Sbjct: 803 VLEEPPVDRIPIQTYVLEHDDEIIREAINREIGRNGQVYYVYNRVSGIDERAAKLAELIP 862 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 AR++ HGQM ERELER+M +F + +VLV TTIIETG+DI NTIII+ AD GL+ Sbjct: 863 GARVSFAHGQMNERELERIMIEFINGEIDVLVSTTIIETGLDISNVNTIIIDDADKMGLS 922 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QL+QLRGRVGRS ++A+L+ + + A+KRL AI DLG+GF +A DLEIRG Sbjct: 923 QLYQLRGRVGRSSRTSFAFLMYKRDRMLKEIAEKRLAAIKEFTDLGSGFKIAMKDLEIRG 982 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPD 1014 AG LLG+ QSG ME +G+ LY ++L V LK + + E +T V++ + +P Sbjct: 983 AGNLLGKSQSGHMEAVGYDLYCKMLNEEVKRLKGEKVAADE----FETAVDIEASAYIPA 1038 Query: 1015 DFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 D+I + RL YKRIA TE EL E+K ELIDR+G +P L++I+ +RQ A ++G Sbjct: 1039 DYIRNEVARLEMYKRIAGIFTEEELSELKDELIDRYGEMPLAVDNLVNISFIRQMAHEIG 1098 Query: 1075 IRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEW 1134 K+E + + + + ++ RL F + + + Sbjct: 1099 TTKVECKGETARFSIYNEVKFDIDKISEVMADNEGRLRLRSGKETYFEYKFGDGTHKTKA 1158 >UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71 Tax=Streptococcaceae RepID=A2RH86_LACLM Length = 1180 Score = 1064 bits (2751), Expect = 0.0, Method: Composition-based stats. Identities = 402/1173 (34%), Positives = 630/1173 (53%), Gaps = 70/1173 (5%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADW 73 E+ LL L+G A + ++A E A +++ +A L+DE+S + V Sbjct: 24 ERTLLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELYDELSTLLGEEKVFQFFSD 83 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-GVLIVPVNTLMQRVCPHSFLHGHALVMKK 132 + + + +D I+ RL L L + G L+VP L + + L++ Sbjct: 84 DNIYAEFALASKDRIAYRLEALNFLLDERATGFLVVPFLALRSYLPAPENFLENYLLLTS 143 Query: 133 GQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 G L L AGY +VM GE++ RG ++D++P+ +E P RL+FF DE+D++ Sbjct: 144 GDEYDLSNLVNLLSKAGYEKTQRVMTPGEFSMRGDIVDIYPLDAENPVRLEFFGDEVDTI 203 Query: 193 RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRD--TFEVKRDPEHIYQQVSK 250 R FDV+SQR+L +E + + PA +F + + + + +Q Sbjct: 204 RSFDVESQRSLTSLERLEIYPASDFILTDNEFDKGAKSLTEMTNLLGDQTSLSVSEQARN 263 Query: 251 GT----------------------LPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG-- 286 G+ + + F+ + L +YFP N + Sbjct: 264 GSAMTDPSAKSYMEEVISAAQNHYYHKDLRKFAEYFYDKKT-SLLNYFPKNVQIFIDDFQ 322 Query: 287 ---DLETSAERFQADTL--ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKT 341 ++ E AD + + RG + LL + ++++N+ + Sbjct: 323 KVNEMNNKLEMELADFILSEKAMERGFEGQTYLL----------DTMAKVRNYKPATFFS 372 Query: 342 EHLPTKAANANLGFQKLPDL------AVQAQQKAPLDALRKFLETFDGPVVFSVESEGRR 395 + NL F++L + Q + + +F++ + VV +V SE R Sbjct: 373 N---FQKGLGNLRFEQLYNFKQHSMQQFFGQLELFYTEVERFIKQ-EFTVVLAVSSEKLR 428 Query: 396 EALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVA 455 ++L EL ++ Q + R + L+ +GF L ++ E ++ G+ Sbjct: 429 KSLHEL----DLSLQEVDR-ESIQVGKVNLIDLQLSNGFNFLDEKLVVMTEQEIFGK--M 481 Query: 456 RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAN 515 R+++ + I +++ EL +G VVH HG+G+Y G+ TLE GG+ +YL + Y N Sbjct: 482 RKKKARKLNITNAERLKDYNELAVGDFVVHKNHGIGKYLGLQTLEVGGMHRDYLTIQYQN 541 Query: 516 DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR 575 + VPV L L+S+Y G ++ ++KL W + +++V D++ +L+ +YA+R Sbjct: 542 GDTISVPVDHLDLLSKYTAGEGKSPKINKLNDGRWRKTMSSVSKQVEDISDDLIKLYAER 601 Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 AK+GFAF D + F F + T DQ ++IN + DM MDRL+ GDVGFGKT Sbjct: 602 QAKKGFAFSPDDASQEEFDSGFSYVETEDQIRSINEIKHDMELERPMDRLLVGDVGFGKT 661 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 EVAMRAAF A+++ KQVAVLVPTT+LA+QH++NF +RF N+ V +E++SRF++ +QT+I Sbjct: 662 EVAMRAAFKAINDGKQVAVLVPTTVLAEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEI 721 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 LA++ +G++D++IGTH+LL DV+F DLGL+I+DEE RFGV+HKER+K ++ VD+LTLT Sbjct: 722 LAKLKKGRVDLIIGTHRLLSKDVEFFDLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLT 781 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYL 815 ATPIPRTL+M+M G+RDLS+I TPP R V+T+V E + VVR+AILREI RGGQVYY+ Sbjct: 782 ATPIPRTLHMSMLGIRDLSVIETPPTNRYPVQTYVMETNYGVVRDAILREISRGGQVYYV 841 Query: 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 YN V+ I++ +L EL+PEARI HGQM E +LE + F ++VLV TTIIETG+ Sbjct: 842 YNRVDTIEQKVSQLEELIPEARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGV 901 Query: 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 DIP +NT+ IE AD GL+QL+QLRGRVGRS+ AYA+ + K ++ ++KRLEAI Sbjct: 902 DIPNSNTLFIENADMMGLSQLYQLRGRVGRSNRVAYAYFMYRPEKILSEVSEKRLEAIKG 961 Query: 936 LEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLE 995 +LG+GF +A DL IRGAG LLG EQSG ++++GF LY +LLE A+ + + + Sbjct: 962 FTELGSGFKIAMRDLSIRGAGNLLGSEQSGFIDSVGFDLYSQLLEEAIHT----KLGTSK 1017 Query: 996 DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPD 1055 + E+ L + + +P +I D ++ YKRI + EE++ EL+DRFG PD Sbjct: 1018 QKRTSNVEISLELDAFIPAYYISDERQKIEIYKRIRQIDSREIYEELQEELVDRFGEYPD 1077 Query: 1056 PARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAE--KNHVNPAWLIGLLQKQPQHYRL 1113 LL+I L+ A + K+E + + + +P L K + Sbjct: 1078 EVAYLLEIGLLKHFADNALVEKIEKSRFEVTVTLEKVANTTYDPQDYFKALAKTSMKASV 1137 Query: 1114 D---GPTRLKFIQDLSERKTRIEWVRQFMRELE 1143 G + + + + F+ EL Sbjct: 1138 GEKYGKMTFRLKIENRNSVVLLSEIMNFVEELS 1170 >UniRef50_Q0F085 Transcription-repair coupling factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F085_9PROT Length = 1109 Score = 1063 bits (2748), Expect = 0.0, Method: Composition-based stats. Identities = 436/1131 (38%), Positives = 640/1131 (56%), Gaps = 47/1131 (4%) Query: 23 TGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT---DQMVMNLADWETLPYD 79 + A +A++A V I PD+++ +L +E++ F Q + + WE LPYD Sbjct: 12 SPPGLAWQLAQLA-TTDRFTVWICPDLRSYRQLAEEVAFFLRDQPQCLWRMPAWEVLPYD 70 Query: 80 SFSPHQDIISSRLSTLYQLPT--MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLS 137 SPH I+ R +TL +L +G+L+ + +QR+ P + H +K G L Sbjct: 71 RVSPHHGIVGERFATLARLLNTPAPQGLLLTALPAWLQRIAPPEVVAAHVWQIKPGDMLD 130 Query: 138 RDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDV 197 AL+++L AG D+V+ GE+A RG L D++P E P R+D F D+I+S+R FD Sbjct: 131 IAALKSRLAEAGMSPADRVLAQGEFAARGGLFDVWPATEETPLRIDMFGDDIESIRRFDP 190 Query: 198 DSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGI 257 +SQR+ E + A +P E D+ E F + +R F R + V G GI Sbjct: 191 ESQRSGESLSAFTSVPVREVILDQRGRECFAAAFRTRFPHLRKH-PMLSSVQAGRPHPGI 249 Query: 258 EYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPP 317 E PL + + L Y P ++ + D++ F +FE P + P Sbjct: 250 EALLPLAY-DNTARLSDYLPDGAVIYSVRDIDVRRSAFAEQVRGQFEMVR-SSTEPSISP 307 Query: 318 QSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKF 377 Q L+ + +E AA + + P L A +K PL ALR Sbjct: 308 QELYAVDTAIRAESL--------------SAARPAIRIEPAPSLIDYADKKQPLHALRDA 353 Query: 378 LE---TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGF 434 L + G++E + E A L + IG + GF Sbjct: 354 LTKQLNHGWKIELIAHGLGQQERMLEACAE----------LSDTFAGAISSCIGYLDTGF 403 Query: 435 VDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYA 494 + L+ +LLG+R+ R+R+ ++ D + +LAEL G PVVH +HGVGRY Sbjct: 404 ALPQQKRLLLTGRELLGQRLPRKRRSGPAILHAD-IFSSLAELKPGDPVVHEDHGVGRYH 462 Query: 495 GMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRAR 554 G+ T++ G +++ + YA+ A ++VPV L + RY G E+ L+KLG + W R R Sbjct: 463 GLETIDEDGDLADFIKIEYADKAHVFVPVEELARLHRYTG--EDAPALNKLGSEKWKRTR 520 Query: 555 QKAAEKVRDVAAELLDIYAQRAAKEGFAF---KHDREQYQLFCDSFPFETTPDQAQAINA 611 ++ + +A EL+DI A R + + Y+ F FPFE T DQAQAI+A Sbjct: 521 ERVKRDLLAMAHELIDIEAARTSASRPPCLLQGPLLDAYEEFAARFPFEETDDQAQAIDA 580 Query: 612 VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRD 671 VL+D+ MDR++CGDVGFGKTEVAMRAAF+ ++ +QVAVL PTT+LA QHY +F + Sbjct: 581 VLTDLALDKPMDRVICGDVGFGKTEVAMRAAFVVAESGRQVAVLAPTTVLANQHYASFAE 640 Query: 672 RFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEE 731 RF +++ MISR + KE QI +A G I I++GTH+LL +F DLG++IVDEE Sbjct: 641 RFIGTDLKVAMISRLQGKKEVEQICRGLAGGDIRIIVGTHRLLSDTFEFADLGMVIVDEE 700 Query: 732 HRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVR 791 RFGV+HK+++K++ A+VD+LTLTATPIPRTL+ MSG+R +SII+TPPA R A++T V Sbjct: 701 QRFGVKHKQKLKSLHASVDLLTLTATPIPRTLHQTMSGLRSVSIISTPPAEREAIRTMVS 760 Query: 792 EYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELE 851 +D + REAI RE+ RGGQVYYL+N V++I++ RL E VPEA I I HGQM EL+ Sbjct: 761 SFDPHIAREAIRRELYRGGQVYYLHNHVQSIERITARLREDVPEAEIGIAHGQMTPAELD 820 Query: 852 RVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAY 911 R M F+ R ++LVCTTIIE+G+D+ ANT+I+ERAD GL+QLHQ+RGRVGRSH QAY Sbjct: 821 RQMLAFYEGRLHILVCTTIIESGLDVANANTLIVERADLLGLSQLHQIRGRVGRSHRQAY 880 Query: 912 AWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIG 971 A+L TP +AMT DA++RL+AIA +LGAGF LA D+EIRGAG LLG EQSG ++ IG Sbjct: 881 AYLFTPDARAMTADARERLQAIAEHSELGAGFLLARQDMEIRGAGNLLGAEQSGRIDEIG 940 Query: 972 FSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIA 1031 +Y+++L +AV + Q ++ L + ++LP D++P RL+ Y+RIA Sbjct: 941 LDMYLDMLSDAVAEARG-----KMPKPKQPLDMHLGVNAILPPDYMPQAGERLNLYRRIA 995 Query: 1032 SAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAE 1091 A ++++ + E+ DRFG +PD A+ L+ AR+R +AQ L + + G + F Sbjct: 996 RADDDSQITLLFEEMTDRFGHMPDEAKYCLENARIRWRAQALHLSGIRAGSLGLRLSFTA 1055 Query: 1092 KNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 + + P L +QK+PQ +RL L + ++ R++ F+ EL Sbjct: 1056 SSPIEPTSLFMRVQKEPQRFRLTPDGNLTLLHSSENQRERLKECIAFLDEL 1106 >UniRef50_A5EV48 Transcription-repair coupling factor n=2 Tax=Cardiobacteriaceae RepID=A5EV48_DICNV Length = 1117 Score = 1061 bits (2745), Expect = 0.0, Method: Composition-based stats. Identities = 475/1124 (42%), Positives = 684/1124 (60%), Gaps = 40/1124 (3%) Query: 29 TLVAEIAERH--AGPVVLIAPDMQNALRLHDEISQFT-----DQMVMNLADWETLPYDSF 81 L +A +++APD A L+D + + Q + +DWETLPYD + Sbjct: 15 HLAYNLAHHLLPKHVHLIVAPDAVWAQYLYDNLMFWLKNSAWQQTLYYFSDWETLPYDHY 74 Query: 82 SPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDAL 141 +PH D++S R+ L +LPT+ +G++I + QR+CP + L + G +++ + Sbjct: 75 TPHPDLVSERIRVLAELPTLTQGIVITSTSAFRQRLCPQTHLDKFGIHCAVGDHIAQKTV 134 Query: 142 RTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR 201 +L AGY+ + E GEYATRG ++DLFPM ++ P RL++ DDEIDS+R FD+ +Q Sbjct: 135 INRLLQAGYQSTHFISEKGEYATRGNIVDLFPMAAQTPIRLEWLDDEIDSIRFFDLKTQL 194 Query: 202 TLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQ 261 TL++ + +++LPA E A FR R F IYQ +S+G P G+EY+ Sbjct: 195 TLKKCQQLSILPARELDLSDAGRVCFRQSARQYFGEHIHQSGIYQSLSEGRTPQGLEYYL 254 Query: 262 PLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLW 321 PLFF E L YFP+NT + +L S + R++ LL P+ LW Sbjct: 255 PLFFDE-TAHLLDYFPSNTCYIPADELAVSLQNHDDYCHKRYQRLNHLRENSLLAPEQLW 313 Query: 322 LRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETF 381 EL L P H+P A L F +++LE F Sbjct: 314 FSPQELQERLATLPT------HMPKNRCTA-LPFSDETPRG------------QQWLEQF 354 Query: 382 DG--PVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVR 439 V S+G RE + L + PQ ++ + L I ++ F Sbjct: 355 ATAERAVLHFSSQGLREYWFDRL--YQEYPQCLISDELPPKNYPALCISPLQYSFC--AD 410 Query: 440 NLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTL 499 + + E+D G + + + + +I++L +L +G PVVH++HGVGRY G+ + Sbjct: 411 GITHLAETDRHGSHTTPNYRQN-KHKDAGAIIQSLQDLTLGAPVVHIDHGVGRYRGLEMI 469 Query: 500 EAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAE 559 + E L++ YA A+L+V +S L LIS+Y+G A ENAPLH+LGG W A++KA + Sbjct: 470 DDD----EMLVIEYAKGARLFVAISDLDLISKYSGTASENAPLHELGGKVWQNAKKKAQQ 525 Query: 560 KVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQP 619 RD AAELL IYA R A A D F F +ETTPDQ AI+AVL+D+ Q Sbjct: 526 TARDTAAELLAIYAAREAASAQALTFDPHMLADFAQQFEYETTPDQQAAIDAVLNDLQQA 585 Query: 620 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 MDR+VCGDVGFGKTEVAMRAA+ AV Q A++ PTTLLA QH NF DRF++ VR Sbjct: 586 KPMDRIVCGDVGFGKTEVAMRAAYAAVLAGYQCAIITPTTLLADQHVHNFLDRFSHIAVR 645 Query: 680 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK 739 I ISRF++ EQ I+ + +G IDI+IGTH+LLQ D+ F LGL+IVDEEHRFGV+HK Sbjct: 646 IAAISRFKTPAEQRAIVQSLRDGTIDIVIGTHRLLQKDIAFARLGLVIVDEEHRFGVKHK 705 Query: 740 ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVR 799 E +K++RA+V++LTLTATPIPRTLN+A+SG+RDLSIIAT PA R +++T + +YD +V+ Sbjct: 706 EALKSLRADVNLLTLTATPIPRTLNLALSGLRDLSIIATAPAGRQSIQTIISQYDPIVIE 765 Query: 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 EA RE+ RGGQ+Y+L+NDV +I + A L+E +P+ARIA+ HGQ+RER LE++M DF++ Sbjct: 766 EACERELNRGGQIYFLHNDVSSIDRIARALSEQLPQARIAVAHGQLRERALEKIMQDFYN 825 Query: 860 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 + +++LV +TIIE+GIDIP ANTIII RAD GLAQLHQLRGRVGRSHHQAYA+L+TP Sbjct: 826 RHYDLLVASTIIESGIDIPNANTIIINRADKLGLAQLHQLRGRVGRSHHQAYAYLITPAW 885 Query: 920 KAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELL 979 + + DAQ+RL A L+ LGAGF LA+ DLEIRGAGE+LG+EQSG ++ IG S Y++LL Sbjct: 886 QTLNKDAQRRLSAFTELDSLGAGFLLASQDLEIRGAGEILGDEQSGQIQQIGMSYYLDLL 945 Query: 980 ENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENEL 1039 E A ALK+G++ + E++ + + ++++ +LLPD ++ D RL+ Y R+A AK+ E+ Sbjct: 946 ERATAALKSGQDFNQEEI-AVRYQIDIGEAALLPDTYVFDPQIRLTLYHRLARAKSIAEI 1004 Query: 1040 EEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAW 1099 +++ +EL DRFG LP A+ L ARL AQ +GI K+ K ++F ++ Sbjct: 1005 DDVMIELSDRFGSLPVLAQNLCHKARLHVYAQLIGIEKIRLQTKTIELQFLPTATIDANK 1064 Query: 1100 LIGLLQKQPQHYRLDGPTRLKFIQDL-SERKTRIEWVRQFMREL 1142 LI LQ+ PQ Y++ PT ++ + + S + +++ + E+ Sbjct: 1065 LIEKLQRDPQCYKMTAPTSVRILLEEASTFAEKRVHLQKLLTEI 1108 >UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0762 Length = 1175 Score = 1061 bits (2744), Expect = 0.0, Method: Composition-based stats. Identities = 374/1160 (32%), Positives = 595/1160 (51%), Gaps = 32/1160 (2%) Query: 6 RYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ-FTD 64 ++ + ++G + AA L+ +A+ +IA + A + ++++ F Sbjct: 20 KFINEFNRNKTGIVGGIIEAAKGHLIYTLADFLDTCPFVIASSEEEAEVVKEDLAFLFGS 79 Query: 65 QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLH 124 + V+ + L Y++ +I+ R+ L + +++ ++ L+ + P Sbjct: 80 ENVIYYPSRDILFYNADVHSNEIVKQRIEALDAIIKNNEAIIVTTIDALLNPLSPKDEFI 139 Query: 125 GHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDF 184 +V+K G + ++ QL GY V +V G++A RG ++D+F + P R++ Sbjct: 140 RAQIVIKIGDTVDLQSMSYQLIENGYERVGRVEVVGQFAIRGGIMDIFSPANNTPIRMEL 199 Query: 185 FDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKA----AIELFRSQWRDTFEVKRD 240 +D EIDS+R F +QRT++ +E + P E + AI + + + T V R+ Sbjct: 200 WDTEIDSIRRFSPITQRTIDNIERAYIYPNQEIIIPREKLLKAIPIIEKELKATIGVLRE 259 Query: 241 P-------------EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGD 287 + + G + P F LF Y + T D Sbjct: 260 SGAKSAANRIKENTNEDIESIVNGLNIETQVLYAP-FCDMETASLFDYLEYKKTIFIT-D 317 Query: 288 LETSAERFQADTLARFENRGVDPMRPLLPPQSLWL--RVDELFSELKNWPRVQLKTE-HL 344 ++ ++ L E+ + P + +E+ +++ + Sbjct: 318 IKKCKDKLLRVFLEYEESVKSRLEYGHMLPSMVKFIFNREEIIAKVFEKNYIGFMPFLAS 377 Query: 345 PTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLAR 404 A N+ +L ++ + + K + VF ++ + + E+L Sbjct: 378 DDMATTKNILEIRLNEINSNYKGLKIFEQDLKQYKAEGKATVFLAGTKSKAAHVAEILEE 437 Query: 405 IKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRT 464 KI + + G+ HGF+ ++ + +L G + R+ S + Sbjct: 438 QKIYTALGDLTYDIQKGQILIASGSLSHGFIYEDLEFVILSDRELFG----KDRKVSTKK 493 Query: 465 INPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVS 524 I + EL G VVH HG+G + G+ + G+ + L + Y LYV ++ Sbjct: 494 KYKGAKIESFMELAEGDYVVHENHGIGIFIGIEKIVTEGVARDNLKINYEGGT-LYVNIN 552 Query: 525 SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 + L+ +Y G L+ LG W +A+ KA V+++A EL+ +Y++R GFA++ Sbjct: 553 QMDLVQKYVGSEGAAPKLNMLGNPEWKKAKSKARNSVKNIAKELILLYSKRENSRGFAYE 612 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 D F +SFP+E T DQ AI AV +DM MDRL+ GDVG+GKTEVA+RAAF Sbjct: 613 KDSIWQTEFEESFPYEETSDQIDAIQAVKTDMESDKIMDRLILGDVGYGKTEVAIRAAFK 672 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 A+ NHKQVA LVPTT+LAQQH++ F R + + + ++SRFR+ K+ + L + G I Sbjct: 673 AILNHKQVAYLVPTTVLAQQHFERFLKRMESQAISVGVLSRFRTPKQIKETLKGIESGMI 732 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 DI+IGTH+LL DV FKDLGLLI+DEE RFGV HKE++K MR VD LTLTATPIPRTL Sbjct: 733 DIVIGTHRLLSKDVLFKDLGLLIIDEEQRFGVAHKEKLKQMRTEVDALTLTATPIPRTLQ 792 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 M++ G+RD+S+I P+ R AV+T+V E +++AI REI R GQVY+L V+NI + Sbjct: 793 MSLIGIRDMSVIEEAPSERRAVQTYVLEESDDFIKDAINREINREGQVYFLSXRVQNIVE 852 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 A +L+ +VP A++A+ HGQM RELE +M F ++ NVLVCTTIIETG+DI ANTII Sbjct: 853 KAAQLSNMVPXAKVALAHGQMSVRELEAIMERFENKEINVLVCTTIIETGLDIANANTII 912 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 I AD GL+QL+QLRGRVGRS QAYA+LL ++ A+KRL AI LGAGF Sbjct: 913 IVDADKMGLSQLYQLRGRVGRSDKQAYAYLLYKRDXILSEVAEKRLNAIKQFTQLGAGFK 972 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 +A DLEIRGAG+LLG QSG M IG+ LY ++L A+ + G + T+ + + Sbjct: 973 IAMRDLEIRGAGDLLGASQSGHMAKIGYELYSKMLREAILIEQGGGIEEEKIETTIEIK- 1031 Query: 1005 ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA 1064 + + + ++I D +L YK+IAS +TE++ + E+ DR+G P LL+IA Sbjct: 1032 ---INAFISSNYIKDEIQKLDIYKKIASIRTEDDYLNVMDEITDRYGDPPTTVLNLLNIA 1088 Query: 1065 RLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD 1124 ++ A I + N +++F + L+ + +D RL F Sbjct: 1089 MIKSSANSQNISLISQNIHMLMLKFTHEVEGKVLSLLANKYGKILRINIDKDIRLFFNTQ 1148 Query: 1125 LSERKTRIEWVRQFMRELEE 1144 +K +++V+Q + +++E Sbjct: 1149 EIPQKEYLDFVKQILCDIKE 1168 >UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Firmicutes RepID=C8NI79_9LACT Length = 1180 Score = 1059 bits (2739), Expect = 0.0, Method: Composition-based stats. Identities = 384/1095 (35%), Positives = 619/1095 (56%), Gaps = 25/1095 (2%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN-LADW 73 E +L+ L+G+ + E+ +V++ P + A + ++E+S++ D+ +++ Sbjct: 25 ESQLVLGLSGSVKHLAESCAFEKLDKQLVIVTPTLLQATQTYEELSEWYDEDIVHLFPVE 84 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKG 133 E+L D D++S R+ TL L Q+G++IVP++ + + + P + ++ + G Sbjct: 85 ESLAADFSVVSPDVVSQRIRTLDFLSRGQKGIVIVPLSGIQKLLVPAALWKKSSIELAMG 144 Query: 134 QRLS-RDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 + DA +L GYR + V GE+A RG+++D++P+ E P RLDFFD E+DS+ Sbjct: 145 SEIESMDAFVERLVELGYRRENMVATPGEFALRGSIVDIYPLDQEYPLRLDFFDTEVDSI 204 Query: 193 RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQ------ 246 R F+ ++QR+++ +E + +LPA + P K A+ +++ ++ + Sbjct: 205 RAFNAETQRSMDVIEEVRILPATDLPLQKEAVWKAQTKIHALYDKDVKSSQSPERRDQVS 264 Query: 247 --------QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQAD 298 Q+ G +P+ + Y+ + E L Y + L+ + + Sbjct: 265 SIQQAIDAQLENGEIPSNLPYFLECIYPEKT-SLLDYVSKDAYLIIDDYARFIEKSKSLE 323 Query: 299 TLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKL 358 A + + SL +L E + + + + Sbjct: 324 EEAGYWKTHHIETGAIASGLSLVQDGRKLLKESPLKRTYLAIFQKGLGRLSLDAIHPITT 383 Query: 359 PDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEA 418 + Q + + V+ V+ R + + + A I + ++ Sbjct: 384 RTMTQFFSQMPMVKVEADRWKKQGATVIVLVDDAKRAQKVEQTFADFDI--KSVISNGTV 441 Query: 419 SDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELH 478 + +M+G +GF A++ E +L + +R + I+ +++ EL Sbjct: 442 LEGQLQIMVGKMHNGFELPEDKFAILTERELFNK--LTKRAPRNQKISNAERLKSYTELA 499 Query: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEE 538 +G VVH+ HGVG Y GM TLE GGI +Y+ + Y + L+VPVS + L+ +Y + Sbjct: 500 VGDYVVHVNHGVGVYQGMETLEIGGIHQDYMSIHYQDGGNLFVPVSQIKLVQKYVSSDAK 559 Query: 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFP 598 L+KLGG W++ ++K A K+ D+A EL+++YA+R A++G+AF D + Q F +FP Sbjct: 560 VPKLNKLGGTEWAKTKRKVAAKIEDIADELIELYAKRDAEKGYAFSRDTVEQQEFEQAFP 619 Query: 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 658 + T DQ +++ + DM + MDRL+ GDVG+GKTEVAMRA F AV + KQ AVLVPT Sbjct: 620 YTETQDQLRSVAEIKEDMQKDKPMDRLLVGDVGYGKTEVAMRAVFKAVMDGKQAAVLVPT 679 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 T+LA+QHY+NF RF+++P +I ++SRFRS KEQ + + ++ +G +DI+IGTH+LL DV Sbjct: 680 TILAEQHYENFVQRFSDYPFKIGLLSRFRSKKEQEETIKKLRKGSVDIVIGTHRLLSKDV 739 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 +F DLGLLIVDEE RFGV+HKER+K +++ VD+LTLTATPIPRTL+M+M G+RDLS+I T Sbjct: 740 QFLDLGLLIVDEEQRFGVKHKERLKQLKSQVDVLTLTATPIPRTLHMSMLGVRDLSVIET 799 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 PPA R V+TFV E + M +R+ I RE+ RGGQV+YLYN VE I+K A+ L LVP R+ Sbjct: 800 PPANRYPVQTFVMEQNPMTIRDGIEREMARGGQVFYLYNRVETIEKKADELRVLVPGCRV 859 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 + HGQM E LE ++ F ++VLV TTIIETG+DIP NT+ IE AD+ GL+QL+Q Sbjct: 860 GVIHGQMSETTLENILFQFIEGEYDVLVTTTIIETGVDIPNVNTLFIENADYMGLSQLYQ 919 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 LRGRVGR++ AYA+L+ K +T ++KRL+A+ +LG+GF +A DL IRGAG L Sbjct: 920 LRGRVGRTNRIAYAYLMYQPDKVLTEVSEKRLQAMRDFTELGSGFKIAMRDLSIRGAGNL 979 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIP 1018 LG++Q G ++++GF LY +LL AV K G+E ++ + E++L++ + +P +I Sbjct: 980 LGKQQHGFIDSVGFDLYSQLLSEAVLK-KQGKEVKSDE---ETVEIDLQIDAYIPASYIQ 1035 Query: 1019 DVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 D ++ YKRI S + EE+ + IDRFG PD L ++ ++ A ++ + Sbjct: 1036 DERQKIEMYKRIRSIDSVEAYEELLDDFIDRFGDFPDEVSALAEVGLIKHYANEINAVSI 1095 Query: 1079 EGNEKGGVIEFAEKN 1093 + + I A+ Sbjct: 1096 KRKDNSVTITIAQPT 1110 >UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B116_HERA2 Length = 1207 Score = 1057 bits (2733), Expect = 0.0, Method: Composition-based stats. Identities = 413/1165 (35%), Positives = 633/1165 (54%), Gaps = 71/1165 (6%) Query: 37 RHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLY 96 R +LIA A+R+H +++ + + VM +TLPY+ S I++ RL+ L Sbjct: 54 RQHRSSLLIAATPDAAVRMHADLTAWLGENVMLFPPTDTLPYEHMSADIGIVAQRLAVLG 113 Query: 97 QLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQV 156 +L + ++ V LMQ ++++G + L S GYR Sbjct: 114 RLHASEPICVVASVKALMQPTMTPEEFQFATRLLRQGDQHDPRKLLAHWVSLGYRVGPTA 173 Query: 157 MEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHE 216 + G+ + RG ++D+FP S+ P RL+F+DD+++SLR++D SQR+ + V I + PAHE Sbjct: 174 EQPGDLSQRGGIIDIFPPTSDRPIRLEFWDDQLESLRIYDPISQRSDKRVRQIQISPAHE 233 Query: 217 FPTDKAAIELFRSQWRDTFEVKRDPEHIY----QQVSKGTLPAGIEYWQPLF---FSEPL 269 P + + R + ++R+ +H + + + G G ++ P F Sbjct: 234 IPFWRRTEAIKRIEQLQIASLRREVQHEWATAREHLETGQRFEGRAFYAPFFRTPHEAAE 293 Query: 270 PPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFS 329 L+ + PA+ +++ + + E +A+ + + A L P L Sbjct: 294 AGLWQHLPASAIILLSEEHELNAQGIELQSHADLVRSTQIENNELPPDFPFPLIAWTFIR 353 Query: 330 E-LKNWPRVQLKTEHLPTKAANANLG----FQKLPDLAVQAQQKAPLDALRKFLETFDGP 384 ++ W + L + + ++ + F + + Q + LR+ L + Sbjct: 354 RSIQRWSCLNLSNQPIADDQNDSFVHEINTFSQAA--SYGGQTDRLFEDLRERLVGGERV 411 Query: 385 VVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR-----GRYLMIGAAEHGFVDTVR 439 V+ S + L EL ++ +A + D + G GF Sbjct: 412 VLISP----QASRLRELASQHNLALIGEEDGPDVDDPPFQSGTIIIRHGNLSGGFSSDPL 467 Query: 440 NLALICESDLLGERVARR-RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTT 498 L ++ +S++ G + R +R+ L L +G VVH+EHG+ +Y G++ Sbjct: 468 RLTILSDSEIFGWQQRRALSTRARKQRTESDRTAFLQSLKVGDYVVHIEHGIAQYEGLSR 527 Query: 499 LEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAA 558 +EA G E+L+L YA+ KLYVPV + +SRY G E L +LG W RA++K Sbjct: 528 IEASGAEREFLVLRYASGDKLYVPVDQVDRVSRYIGAGEGKPTLTRLGTSDWERAKRKVR 587 Query: 559 EKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQ 618 V ++A ELLD+YA R EGFA+ D + DSFP+ T DQ +AI V SDM Sbjct: 588 ADVEELATELLDLYAARQLVEGFAYSSDTSWQRELEDSFPYTETDDQLRAIEEVKSDMEN 647 Query: 619 PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPV 678 MDRL+CGDVGFGKTEVA+RAAF AV + +QVAVLVPTT+LAQQH++ F R +PV Sbjct: 648 TRPMDRLICGDVGFGKTEVALRAAFKAVQDGRQVAVLVPTTVLAQQHFETFSRRMQMFPV 707 Query: 679 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH 738 RIEM+SRFRSA +Q I + +G+IDI++GTH++L SD+ FK LGL+I+DEE RFGV+ Sbjct: 708 RIEMLSRFRSASQQKSITERIVKGEIDIVVGTHRILSSDIHFKQLGLVIIDEEQRFGVKD 767 Query: 739 KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVV 798 KER+K +R +D+LTLTATPIPRT++MA+SG+RDLS+I TPP R+ +KT+V+ Y+ M+V Sbjct: 768 KERLKKLRHEIDVLTLTATPIPRTMHMALSGIRDLSVIDTPPDDRMPIKTYVQPYNEMLV 827 Query: 799 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 858 R+AILRE+ R GQ Y+++N V++I A RL +LVPEARI +GHGQM E+ LE+V+ F Sbjct: 828 RDAILRELGRNGQAYFVHNRVQSIYTVANRLQKLVPEARIGVGHGQMPEKALEKVILQFF 887 Query: 859 HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 F+V VCTTIIE+GID+P+ANT+II+ A +GLAQL+QLRGRVGRS + YA++ Sbjct: 888 EGLFDVFVCTTIIESGIDVPSANTMIIDDATTYGLAQLYQLRGRVGRSTQRGYAYMFYNP 947 Query: 919 PKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMEL 978 KAM +AQKRLEAI +LGAGF +A DLEIRG G LLG EQSG++ TIGF LY L Sbjct: 948 TKAMGEEAQKRLEAIQEATELGAGFRIAMRDLEIRGTGNLLGAEQSGNITTIGFDLYSRL 1007 Query: 979 LENAVDALKAGREPSLED------------------------------------LTSQQT 1002 L AV+ ++ R+ + L Sbjct: 1008 LSQAVERVREERKRGQQQKSGEQKAQRARAVEALRRAAVVSARSSFSGDADDPVLPDAMV 1067 Query: 1003 EVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLD 1062 ++L + + LP +++ D RL Y+ IA A++ ++ ++ EL DRFG +P+PA LLD Sbjct: 1068 SIDLPINAYLPQNYVDDEPLRLRVYQHIAEARSTRDIRMLRQELEDRFGPVPEPAARLLD 1127 Query: 1063 IARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFI 1122 + ++ A + G+ + ++ + + +++ L ++ P+ + + Sbjct: 1128 LLTIKVLALQAGVISIISDDNEITVRLPKSVYLDRE---QLQRESPRGVVIGPQ-----L 1179 Query: 1123 QDLSERKTRIEW---VRQFMRELEE 1144 L R R +W +RQ + L + Sbjct: 1180 ARLDRRVLRDDWEVVLRQLLEALNK 1204 >UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYW6_THERP Length = 1165 Score = 1055 bits (2729), Expect = 0.0, Method: Composition-based stats. Identities = 440/1145 (38%), Positives = 637/1145 (55%), Gaps = 36/1145 (3%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMN 69 + +G+ + EL AA ++A +A P+++I P +A L D + Q + V Sbjct: 31 LASGQSLVAEELPVAARPAVLAALARILDRPLLVIVPRQAHADELADAVGQLLGEIPVEV 90 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 ETLPYD F+ + R L ++ G+ I P L+Q + P+ L G L Sbjct: 91 WQAPETLPYDVFAQDRASAVERSWFLQRMTEPSPGLFIAPARGLLQLLPPNESLRGCPLT 150 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 ++ GQ+++ + L +GY V V + G ++ RG ++D++P G++L R++FF DEI Sbjct: 151 LRVGQKMALQTVLDYLVDSGYAPVPLVQQPGSFSRRGGIVDVWPPGNDLAVRIEFFGDEI 210 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF----EVKRDPEHIY 245 DS+R F+ +QR+++ + +I LLP E P + + + DT EV+ + E + Sbjct: 211 DSIRRFEPTTQRSVDRLHSIMLLPLSEAPLPQLQAAATKLRRLDTSSLRPEVREEWERLC 270 Query: 246 QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN--TLLVNTGDLETSAERFQADTLARF 303 QQ+ +G L E P F E L FP + ++V+ G + + ++ Sbjct: 271 QQIERGELVPLPELALPFVFPEA-SSLLDRFPRSFPVVVVDPGAVRLTIDQLTQQAEELR 329 Query: 304 ENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAAN---ANLGFQKLPD 360 E + P P+ + D +++ L+ P + L T A ++LGF Sbjct: 330 ETSELSGELPRGLPRP-YHPDDRIWTSLRVHPILWLGTVEQGDSANGDIPSDLGFTT-DI 387 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 A+ + L FL D V E + + L LL+ + Sbjct: 388 PAIAGRLDTLPAVLAPFLAE-DYAVTLVTE---QADRLAHLLSESSQYAEAASIAASTIA 443 Query: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 RGR G+ L L+ + +L RR R + L+ L G Sbjct: 444 RGR------LPGGWKHREARLLLLTDRELF---GLRRLPRPRGRRRFEVTSDLLSRLVPG 494 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 VVH++HG+ RY G+ L G+ EYL+L YA + +LY+PV L I+ Y E Sbjct: 495 AYVVHVDHGIARYGGLVHLTINGVHREYLLLEYAENDRLYLPVDQLDRITLYESLDGE-P 553 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 L +LG WSR +++ E VR++A ELL +YA R A G AF D + + +SFP+E Sbjct: 554 KLTRLGSPEWSRVKRRVREAVRELAFELLQLYAAREAAPGIAFGPDTQWDRELEESFPYE 613 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 TPDQ +AI V +DM +P MDRL+CGDVGFGKTEVA+RAAF AV+N QVA+LVPTT+ Sbjct: 614 ETPDQWRAIQEVKADMERPRPMDRLLCGDVGFGKTEVALRAAFKAVNNGYQVAILVPTTV 673 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LA QHY+ FR+R A++PVRIEM+SR RS +EQ I+ + G +DI+IGTH+LLQ DV F Sbjct: 674 LALQHYNTFRERLASYPVRIEMLSRLRSKREQRAIIEGLRAGTVDIVIGTHRLLQRDVAF 733 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 K LGL+I+DEEHRFGV HKE K +R NVD+LT+TATPIPRTL +A+SG+RDLS+IATPP Sbjct: 734 KRLGLVIIDEEHRFGVAHKEHFKRLRTNVDVLTMTATPIPRTLYLALSGVRDLSVIATPP 793 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 R V+TFV V+REAILREI RGGQVY ++N V +I A+RL LVPEAR A+ Sbjct: 794 VDRTPVRTFVTPARDSVIREAILREIARGGQVYVVHNRVHSILDFAQRLRGLVPEARFAV 853 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 HGQM E+ELER++ DF ++++VL+CT IIE+G+DIP+ NTIII++A GL QL+QLR Sbjct: 854 AHGQMPEQELERIIVDFIERKYDVLICTAIIESGVDIPSVNTIIIDQAQQLGLTQLYQLR 913 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGRSH +AYA+LL + ++ +A+ RLEAI +LGAG +A DLEIRGAG +LG Sbjct: 914 GRVGRSHQRAYAYLLYDDRRPLSAEARARLEAIQEATELGAGLQIALRDLEIRGAGNILG 973 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 EQSG + +G LY +LL AV L+ GR + ++L + + +P ++ D Sbjct: 974 PEQSGHIAAVGLELYTQLLARAVQELREGRPID----EAPSVTIDLPIEATIPSEYCGDE 1029 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 R+ Y+R A +T+ +LE++ E+ DRFG LPDP + L+D+A+LR A +LG+ L Sbjct: 1030 AIRMRLYQRFAEIRTDEQLEDLVSEIRDRFGPLPDPVQRLVDLAQLRLWANRLGLASLIE 1089 Query: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1140 + I ++ L Q Y RL + E V +R Sbjct: 1090 RDGELFIRPVVGTRLDQEEL--RRQVGSGVYVTPHQIRLVIARLEVPL---WEAVTTVLR 1144 Query: 1141 ELEEN 1145 +E Sbjct: 1145 AIEHR 1149 >UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B5CPD5_9FIRM Length = 1117 Score = 1053 bits (2723), Expect = 0.0, Method: Composition-based stats. Identities = 389/1150 (33%), Positives = 601/1150 (52%), Gaps = 63/1150 (5%) Query: 5 YRYTLPVKAGEQRLL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 Y+ + + + +L + L+ +++ V++ + A + ++E Sbjct: 14 YQEIVQKRGKAEGILQIAGCVSSQKTHLMYALSDGFEYR-VIVFSSEEKAKQAYEEYK-M 71 Query: 63 TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLP---TMQRGVLIVPVNTLMQRVCP 119 ++ + L Y + + R+ L +L + +I + + + Sbjct: 72 LEENTFLYPAKDLLFYHADIKGAALTGKRMEVLKKLTEKKNREPVTVITTADAFLDGLPS 131 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 L + ++ G + L+ +L GY Q+ G++A RG +LD++P+ E+P Sbjct: 132 KEKLWESRIEIEAGAVIDFQKLQEELVHLGYERESQIEGPGQFAVRGGILDVYPLTEEIP 191 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR 239 R++ + DEIDS+R FDV+SQR++E +E + + PA E Sbjct: 192 VRIELWGDEIDSIRSFDVESQRSVENMEKVVIYPATE----------------------- 228 Query: 240 DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADT 299 + E Q VS E FF EP+ L+ + E + + Sbjct: 229 NVEKKEQAVSFSEYFPKEESL--FFFDEPV-----------------RLQETLEAVEKEY 269 Query: 300 LARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQ-KL 358 FE+R M ++ + E+ + + L T + + Sbjct: 270 FHSFESRKNAGMTEEADEIRVF-QTKEIIEKFNTRYGIGLTTLETRCGGFKVRDVYSIQA 328 Query: 359 PDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEA 418 + L K L+ V+ S R + L E L ++ + Sbjct: 329 AGVNPYNNSFEMLTQDLKKLKRQGYRVILVSGSRTRAKRLAEDLRDYDLSSFYSEDMVRT 388 Query: 419 SDRG-RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAEL 477 G ++ G G+ + +I ESD+ G+R + RR + I+ AEL Sbjct: 389 VRPGEIMVVYGCVAEGYEYPMLKFMVISESDIFGKRK----KKRRRKVYEGQKIQEFAEL 444 Query: 478 HIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAE 537 G VVH HG+G Y G+ +E +T +Y+ ++YA+ LY+ + + LI +YAG Sbjct: 445 KPGDYVVHENHGLGVYQGIEKVEVDKVTRDYMKISYADGGILYILATQMDLIQKYAGADA 504 Query: 538 ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSF 597 + L+KLG W++ + + + V+ +A +L+++YA R EGF + D + F + F Sbjct: 505 KPPKLNKLGTPQWNKTKSQVKKAVQVIAQDLVELYAVRQQTEGFVYSPDTVWQKEFEEMF 564 Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 PFE T DQ +AI DM MDRL+CGDVG+GKTEVA+RAAF AV + KQV LVP Sbjct: 565 PFEETEDQLRAIEDTKKDMESTKVMDRLICGDVGYGKTEVAIRAAFKAVQDGKQVVYLVP 624 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 TT+LAQQHY+ F R ++PVRI+++ RFR+ +Q + + ++ +G +DI+IGTH++L D Sbjct: 625 TTILAQQHYNTFIQRLKDFPVRIDLLCRFRTPAQQKKTIEDLKKGLVDIVIGTHRVLSKD 684 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 V +KDLGLLI+DEE RFGV HKE+IK MR N+D+LTLTATPIPRTL+M++ G+RD+S++ Sbjct: 685 VTYKDLGLLIIDEEQRFGVTHKEKIKKMRENIDVLTLTATPIPRTLHMSLIGIRDMSVLE 744 Query: 778 TPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEAR 837 P R+ ++T+V E++ ++REAI RE+ RGGQVYY+YN VE+I A R+ +LVP A Sbjct: 745 EAPMDRMPIQTYVMEFNDEMIREAIERELSRGGQVYYVYNRVEDIADVAGRVQKLVPGAS 804 Query: 838 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 897 ++ HGQM ERELE +M DF + +VLV TTIIETG+DI ANT+II+ AD FGL+QL+ Sbjct: 805 VSFAHGQMSERELEDIMYDFINGEIDVLVSTTIIETGLDIANANTMIIQDADRFGLSQLY 864 Query: 898 QLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGE 957 QLRGRVGRS AYA+LL K + A+KRL AI DLG+G +A DLEIRGAG Sbjct: 865 QLRGRVGRSSRMAYAFLLYRRDKLLKEVAEKRLAAIREFTDLGSGIKIAMRDLEIRGAGN 924 Query: 958 LLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFI 1017 LLGE QSG M +G+ LY ++L AV LK +E T ++L + + +P+ +I Sbjct: 925 LLGEAQSGHMAAVGYDLYCKMLNEAVKELKGEKEED-----QFTTTMDLNIDAFIPESYI 979 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 + +L YKRIA+ TE E++++ ELIDRFG +P + LL IA L+ A + Sbjct: 980 KNEYQKLDIYKRIAAITTEEEMDDMTEELIDRFGDIPKKVQQLLHIAALKSLAHAAYVTA 1039 Query: 1078 LEGNEKGGVIEFAEKNHVNPAWLIGLLQK--QPQHYRLDGPTRLKFIQDLSERKTRIEWV 1135 +E EK ++P + GLLQ+ +R + P + + K E Sbjct: 1040 VEQKGSDFKFTLYEKAKLDPQKIPGLLQRYGNKLVFRAEEPPYFFYQKKGRSGKETGEDT 1099 Query: 1136 RQFMRELEEN 1145 Q +R++ E+ Sbjct: 1100 IQLLRKILED 1109 >UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VP19_9CLOT Length = 1149 Score = 1050 bits (2715), Expect = 0.0, Method: Composition-based stats. Identities = 388/1151 (33%), Positives = 599/1151 (52%), Gaps = 37/1151 (3%) Query: 7 YTLPVKAGEQ----RLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 Y V A E+ + ++G A L+ + R +++A D RL +++S Sbjct: 14 YETLVSAVERHNTPAAVTGVSGIHKAHLIHSLCARTGRKALVLASDEGEGQRLCNDLSSM 73 Query: 63 TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSF 122 + + + ++ RL + + V+I ++ +Q P Sbjct: 74 -GTAALVYPARDFNFRAAEGQSREYEHQRLQVMAGMLDGDYQVVISCIDAALQYTIPPDE 132 Query: 123 LHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRL 182 L L ++ GQ + + L ++GY QV G++A RG +LD F + P R+ Sbjct: 133 LRSKRLTLRAGQEAPLEKIEALLSASGYERYQQVEGPGQFAVRGGILDFFTPDASAPVRV 192 Query: 183 DFFDDEIDSLRVFDVDSQR-TLEEVEAINLLPAHEFPTDKAA-----IELFRSQWRDTFE 236 +F+ DEID+L FD ++QR T + +E I L P+ E IE + R Sbjct: 193 EFWGDEIDTLCYFDPETQRRTDDPLEEITLAPSTEVLVSSPGSLAKKIERLSAGLRGKTA 252 Query: 237 V--KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAE- 293 V K Q+ G P + + PL + P L Y L+ + ++ Sbjct: 253 VRAKERLAQEADQLLAGKRPGSADKFLPLLYPSP-ATLLDYLEPEALVFQSEPIKIKERL 311 Query: 294 -----RFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKA 348 ++ D E + ++++ + + P + Sbjct: 312 RSTAWQWGEDLKDYLEEGILCKGLDAFSGDYIYVQKQLEHRDCVYLDTFVRGSYDTPL-S 370 Query: 349 ANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIA 408 + NL ++ L+V L + + +V +E A E L I Sbjct: 371 SLINLNARQ---LSVWGGGMQLLQEDLNAILSPKMRIVVLGGTERSARAAAEDLQNSGIP 427 Query: 409 PQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPD 468 + ++ G+ GF N ALI A + +R+ Sbjct: 428 CEYRDDAKTLFLGRVTVLPGSLSAGFEYPTANFALITHG-----HFAAAPKRARKRQKNA 482 Query: 469 TLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHL 528 I +L+EL G +VH HGVG + G+ LE G+T +YL + YA LYVPV+ L + Sbjct: 483 KEIYSLSELAPGDYIVHSAHGVGVFEGIHKLEMQGVTKDYLKVRYAKGDILYVPVTQLDM 542 Query: 529 ISRYAGGAEE-NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 587 +S+Y G EE L++LGG W +A+ + V+D+A EL+ +YA+R +G AF D Sbjct: 543 VSKYIGPKEEVKVRLNRLGGQDWQKAKARVRSAVKDIAKELIKLYAERMKLKGHAFPPDT 602 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 + F F +E T DQ + I + DM + MDRL+CGDVGFGKTEVA+RAAF V Sbjct: 603 GWQRDFESRFEYEETEDQLRCIQEIKEDMEKEQPMDRLLCGDVGFGKTEVALRAAFKCVT 662 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 + KQ A+LVPTT+LA QHY RF +P+++E++SRFR+ K+Q +IL ++ G+ID++ Sbjct: 663 DSKQCALLVPTTILAWQHYQTVTQRFEGFPIKVEILSRFRTPKQQAEILKQLKRGEIDMI 722 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 IGTH+L+Q DV+F+DLGL+I+DEE RFGV KER K++ NVD+LTL+ATPIPRTLNMA+ Sbjct: 723 IGTHRLVQKDVQFRDLGLVIIDEEQRFGVAQKERFKSVTKNVDVLTLSATPIPRTLNMAL 782 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 SG+RD+S + P R V+T+V EYD V+ +A+ RE+ RGGQVYYL+N VE+I++ A Sbjct: 783 SGIRDMSSLEEAPQDRHPVQTYVLEYDQAVINDAVRRELRRGGQVYYLHNKVESIERVAA 842 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 RL +PEA++ GHG+M E EL V Q NVLVCTTIIETG+D+P NTIIIE Sbjct: 843 RLQAQIPEAKVGFGHGKMPEGELSEVWRRVMEQEINVLVCTTIIETGVDVPNVNTIIIED 902 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 ADH GL+QLHQ+RGRVGRS +AYA+L K ++ +QKRL AI + G+GF +A Sbjct: 903 ADHMGLSQLHQIRGRVGRSSRRAYAYLTFTRNKVLSEISQKRLAAIREFTEFGSGFKIAM 962 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR 1007 DLE+RGAG +LG EQ G MET+G+ +Y+ LL AV K S E + V+++ Sbjct: 963 RDLELRGAGNILGGEQHGHMETVGYDMYLRLLGEAVSEEKGEEASSYE----LECLVDVQ 1018 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 + + +P+ +I ++ RL Y+RI+ +++++ ++ ELIDRFG P + L+D+A +R Sbjct: 1019 VQAHIPEGYIESLSQRLEIYRRISDIRSQDDAMDVLDELIDRFGEPPASVKGLIDVALIR 1078 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE 1127 A LGI +++ N ++ + ++ ++ L+ + ++ + L Sbjct: 1079 NTAASLGIYEIKQNAGALLLY---QRKLDMEFVSRLIGAFKKRVLVNAGAKPYISVKLQA 1135 Query: 1128 RKTRIEWVRQF 1138 + +E +RQ Sbjct: 1136 GDSPLETLRQV 1146 >UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Brachyspira RepID=C0R051_BRAHW Length = 1247 Score = 1049 bits (2713), Expect = 0.0, Method: Composition-based stats. Identities = 370/1168 (31%), Positives = 613/1168 (52%), Gaps = 63/1168 (5%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 L L G + + + + + +++I + +A+ L ++ F + D++T+P+ Sbjct: 32 LTGLKGGSDSLFFSSLFNK-NESILIIKENESDAMLLSQSLN-FYNIPNYYFPDYDTVPF 89 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 SP DI R++ LY+L ++ ++I VN + +++ L + + G +L Sbjct: 90 TKMSPVSDIAQDRINILYKLINKEKCIIITTVNAVTRKLPNRDDLKKLPIHLNVGDKLDL 149 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 D LR L GY +V E G + RG+++D+F + P R++ FDDEI+S+R+F+++ Sbjct: 150 DNLRLTLYDLGYVIEREVAEKGTASVRGSIVDVFSVEYNNPIRIELFDDEIESIRLFNIE 209 Query: 199 SQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIE 258 R+ + VE I + P E +A+ F + + + + K AG E Sbjct: 210 DGRSFKSVENIIIYPVRETIYSDSAVSEFINN-------NEIEDELKDNIIKRKYFAGSE 262 Query: 259 YWQPLFFSEPLPPLFSYFPANTLLVNTG-------------------------DLETSAE 293 P+F+ + L +F YF + + ++ Sbjct: 263 NLLPIFYKD-LETIFDYFDYGYIFTDDALKLKNKFITIIDTIKENFNDIDNIFNIIEDIY 321 Query: 294 RFQADTLARFE-NRGVDPMRPLLPPQSLW-----------LRVDELFSELKNWPR----V 337 + D+ E + + P + ++ R+ + +K + + Sbjct: 322 KLYIDSNYFAEIVKKAINISPFITDIDIYKFHFEEGISFKSRLTDFLDYVKEYREKDYLI 381 Query: 338 QLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVF--SVESEGRR 395 L T H + Q L + + ++ E D + E++ Sbjct: 382 ILSTGHNDQALRFYKIM-QDLSPTIITENDIEDTEDIKDKEENSDNKEINNDIKENDDNN 440 Query: 396 EALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVA 455 E E++ + I + ++ Y++ + GF+ I + ++ G + Sbjct: 441 EDNKEIILEDTNKKEEIKKDYSKNENNFYIITAQSSSGFIKDDIKTIFIADWEVFGRKRK 500 Query: 456 RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAN 515 + R+ + N LI +L++G VH+ +G+G+Y G+T + G +Y+ L YA Sbjct: 501 KVRKIPKVNKN---LIETFVDLNVGDYAVHVNYGIGKYLGLTRKMSNGKEKDYITLEYAK 557 Query: 516 DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR 575 KLY+PV ++ + +Y G E L +LGG AW + + KA E A EL+ +YA R Sbjct: 558 GDKLYIPVEQMNFVQKYISGHGEAPKLTQLGGSAWDKIKSKAREDALATARELIKLYAIR 617 Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 + G + D + F SF +E T DQ +AIN + DM MDRLVCGDVGFGKT Sbjct: 618 SNIRGNVYGPDTQWQDDFEASFRYEETVDQLRAINDIKEDMESGKMMDRLVCGDVGFGKT 677 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 EVA RA F A+ KQ A+L PTT+L+QQHY+N + RF ++P++IE+++RF ++K+ + Sbjct: 678 EVAFRAVFKAIMAGKQCAILCPTTILSQQHYNNAKKRFEDFPIKIEVLNRFVTSKQAKRN 737 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 + EG D+++GTH LL D++FK+LGL+++DEE RFGV+HKE +K +R D+LTL+ Sbjct: 738 KELLKEGSCDLIVGTHMLLSKDIEFKNLGLIVIDEEQRFGVKHKEALKKLRLETDVLTLS 797 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYL 815 ATPIPRTLNMA++G+RD+SII TPP R+ VKTFV E+ V AI RE+ R GQV+YL Sbjct: 798 ATPIPRTLNMALTGIRDISIIETPPLNRIPVKTFVTEFSEDAVVNAIERELKREGQVFYL 857 Query: 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 YN ++ I+ A + +L P+ARI + HG+M +LE++M DF + ++++LV TTIIE GI Sbjct: 858 YNRIDTIESFALMIKKLCPKARICVAHGRMTGHQLEKIMGDFINHKYDILVSTTIIENGI 917 Query: 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 DIP ANTI+I+ A+ GL++L+QLRGRVGRS +AYA++ P A+T A KRLEAI+ Sbjct: 918 DIPNANTILIDNANKLGLSELYQLRGRVGRSDREAYAYMFYPSDLALTEVAYKRLEAISE 977 Query: 936 LEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLE 995 DLGAGF +A DLEIRGAG +LG+EQSG + +G+ LY ++LE A + K + Sbjct: 978 HTDLGAGFKIAMRDLEIRGAGNILGKEQSGMIYQVGYELYTQMLEEAANEYKGEIKEV-- 1035 Query: 996 DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPD 1055 + T ++L+ +PD +I D ++S YK I ++ + ++E K +ID++G LP Sbjct: 1036 ---TFDTVIDLKHNLFIPDSYIADSKEKISAYKLIMRSQRDEDIEYSKEFMIDKYGKLPK 1092 Query: 1056 PARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDG 1115 + DIA+++ +++ I + ++ + + ++ LI L+ + D Sbjct: 1093 ELEDIFDIAKVKIILKRMRILSVIEGHYNIYLKLDKLSKIDTDKLINLINTKNSGVYFDK 1152 Query: 1116 PT-RLKFIQDLSERKTRIEWVRQFMREL 1142 I + E++ IEW + +R + Sbjct: 1153 DNLNQLIIPVIHEKENDIEWKLEKIRNV 1180 >UniRef50_D2RAQ2 Transcription-repair coupling factor n=6 Tax=Actinobacteridae RepID=D2RAQ2_GARVA Length = 1202 Score = 1049 bits (2713), Expect = 0.0, Method: Composition-based stats. Identities = 406/1156 (35%), Positives = 621/1156 (53%), Gaps = 74/1156 (6%) Query: 27 CATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD---QMVMNLADWETLPYDSFSP 83 + +VA +A++ PVV+I P ++A + + D Q V L WETLP++ SP Sbjct: 81 RSAIVAALAKK--KPVVVIVPSSRDAEDFIASVRDWYDGDAQDVAKLEAWETLPHERLSP 138 Query: 84 HQDIISSRLSTLYQLPTMQR--------GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 D ++SR++ +L + VL++PV +L+Q V L+ + G+ Sbjct: 139 RADTVASRIAVFRRLCHPENNTSLFGPIRVLVMPVRSLIQPVV-EGIGDIDPLLFECGKE 197 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 L+ + +L Y VD VME GE+A RG ++D+F P R++FF DEID+++ F Sbjct: 198 LTLEYAVKRLVENAYNRVDLVMERGEFAVRGGIIDVFAPTMTHPVRIEFFGDEIDTIKQF 257 Query: 196 DVDSQRTLEE-VEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLP 254 QRT + +I P E E + R + + + + ++ Sbjct: 258 HASDQRTYGNNIASIWATPCRELQIT----EKICKRARSLIGSIPNADDMLESIANSIPV 313 Query: 255 AGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG---------DLETSAERFQADTLARFEN 305 G+E P + + + + P ++++ + D+ +A F A Sbjct: 314 EGMESLLPALV-DRMESVQNMLPKESVIILSDPEKCRRAADDVTATANEFLA-ASWHVAA 371 Query: 306 RGVDPMRPLLPPQSLWLRVDELFS--ELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAV 363 G P+ Q+ +L DE S EL N +L + + + N+ Sbjct: 372 SGHGSGAPITFDQANFLDFDETISSLELSNHDVWKLTSFGVDNQ-IYGNIALPASAPQEF 430 Query: 364 QAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR 423 + + + ++ V + + G L + + +R Sbjct: 431 RGDESKVSGGITSLVDN-GFAVTITAAASGTLARLRRAIYATGVHEFTTVR--------- 480 Query: 424 YLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPV 483 + GF+D V +A++ E DL G+ A + + + +L EL G V Sbjct: 481 ----SSISDGFIDNVARIAILTERDLTGKSSASAQLKTPKRRRKAI---DLMELKPGDFV 533 Query: 484 VHLEHGVGRYAGMTTLEA----GGITGEYLMLTYAN------DAKLYVPVSSLHLISRYA 533 VH +HG+GR+ GM G T EYL++ YA + KL++P L L+S+Y Sbjct: 534 VHEQHGIGRFVGMKQRNIAVSGGSATREYLVIEYAPSKRNAPNDKLFIPTDQLDLVSKYI 593 Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 G E L+KLGG W++ + KA + V ++A L+ +Y+ R GFAF D + Sbjct: 594 GA--EIPKLNKLGGSDWAQTKAKAKKHVHEIAENLIKLYSARQQSRGFAFSKDTPWQKEL 651 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 D+FP++ T DQ I+ V +DM P+ MDRL+CGDVGFGKTE+A+RAAF AV + KQV Sbjct: 652 EDAFPYQETADQLTTIDEVKADMENPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVV 711 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 VLVPTTLL QQHY+ F +RF +PV++ +SRF+++KE + LA + +G ID++IGTHKL Sbjct: 712 VLVPTTLLVQQHYETFTNRFEGFPVKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKL 771 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 L +KFKDLGL+I+DEE RFGV HKE +KA+R NVD+L+L+ATPIPRTL MA++G+R++ Sbjct: 772 LNPSIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREM 831 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 S +ATPP RL V T+V YD+ V I RE+LRGGQV+Y++N VE+I A ++ ELV Sbjct: 832 STLATPPEDRLPVLTYVGAYDNSQVAACIKRELLRGGQVFYVHNRVEDISSVASKIQELV 891 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 P+ R+AI HG+M E++L+ V+ DF H+ +VLVCTTIIETG+DI ANT+I++ AD FGL Sbjct: 892 PDVRVAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGL 951 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 +QLHQLRGRVGR H +AYA+ L K MT + RL IA LG+GF +A DLE+R Sbjct: 952 SQLHQLRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQHTALGSGFDVAMKDLELR 1011 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLP 1013 G G LLG+EQSG +E +GF LY+ ++ AV+ K E + ++L + + LP Sbjct: 1012 GTGNLLGDEQSGHIEGVGFDLYVRMVSEAVEKYK-----EPERVEPVCVTIDLPVEASLP 1066 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKL 1073 D+I RL Y+++A+AK ++L+E+ EL+DRFG P+ +L D+ARLR +A+++ Sbjct: 1067 VDYIASDKLRLEAYRKLAAAKDNSDLQELHDELLDRFGNPPEEFESLCDVARLRFKAREI 1126 Query: 1074 GIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLD------GPTRLKFIQDLSE 1127 GI ++ K + + + + K Q+ L P Sbjct: 1127 GITQISSQGKSVRVV-GIDPKESVMMRLKRIYKGLQYRPLTHMLIVPAPFESSLGSGSMS 1185 Query: 1128 RKTRIEWVRQFMRELE 1143 ++W +Q + +L Sbjct: 1186 ESDILKWSKQLLEDLA 1201 >UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bacteria RepID=C3RLI7_9MOLU Length = 1144 Score = 1048 bits (2711), Expect = 0.0, Method: Composition-based stats. Identities = 378/1122 (33%), Positives = 622/1122 (55%), Gaps = 17/1122 (1%) Query: 28 ATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDI 87 A LV +++I P+ A L+ +IS ++ + E+ ++ + ++ Sbjct: 33 ALLVTSAFLTLQKDIIVIKPNQYEANLLYQQISLINEKDSLFFPVDESYRIEALASSPEL 92 Query: 88 ISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDS 147 + R+ LYQL T Q +LI L++ + + L +K G ++ L+ L Sbjct: 93 LGQRIDALYQLTTDQPKILITHGQALVRYLPSRQLFLDNCLNLKTGMQIDIYDLQKLLIK 152 Query: 148 AGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVE 207 AGY +V + ++ RG ++D+F + + P R++FFDDEID++R ++ +SQRT+E+V+ Sbjct: 153 AGYTSAPRVDQPFYFSKRGGVIDVFSIQYDNPLRIEFFDDEIDNIRFYNQNSQRTIEKVK 212 Query: 208 AINLLPAHEFPTDKAAIELFRSQWRDTFEVK-RDPEHIYQQVSKGTLPAGIEYWQPLFFS 266 + ++PA + D+ + S+ D + + + + +YQ+ + E + S Sbjct: 213 EVTIIPASDILYDEQEVPAVLSKINDLRDRQIEELDELYQEDYLSKVSIDQENLRNHDTS 272 Query: 267 EPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDE 326 + F+ F L++ D + D ++N + S+ + Sbjct: 273 FTMYGYFNLFNQTASLLDYLDTPLIIQANNHDINFAYKNYLEENHYYYQELASIGKTIKG 332 Query: 327 LFSELKNWPRVQLKTEHL-PTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPV 385 L + + K+ + P ++ ++ F + + ++ +R +L+ V Sbjct: 333 LNLFRDLYEVIDRKSVNFKPFAQSDKDVLFNARAIMINNDDEAMIINQIRAYLKL--SKV 390 Query: 386 VFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALIC 445 V +++ + + + + EL R ++A I DE G + + G + +I Sbjct: 391 VVALDDDHQLKLMTELFDRHEMAYTLIGIKDEIYP-GLNIAVNKIGFGIELVDEKIVIIS 449 Query: 446 ESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGIT 505 ++L R ++ + + ++++ EL+IG VVH HG+G+Y G+ TLE G Sbjct: 450 ANELFKTRNIKKPKYFKYK--NAKVLKDYQELNIGDYVVHDNHGIGQYLGIKTLEVQGFH 507 Query: 506 GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVA 565 +YL + YA D LY+PV +I +Y+ + ++KLGG W + + KA KV D+A Sbjct: 508 KDYLYVAYAGDDTLYIPVEQFKMIRKYSSNEGKVPKINKLGGSQWQKTKAKARSKVDDIA 567 Query: 566 AELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRL 625 +L++IY+ R + G+AF D E F SF +E T DQ +++ + +DM + MDRL Sbjct: 568 DKLIEIYSARINQPGYAFPSDSEIQLEFERSFGYELTVDQLRSVEEIKADMEKSQPMDRL 627 Query: 626 VCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISR 685 +CGDVGFGKTEVA+RAAF A+ +KQVA L PTT+L+ QHY RF ++PV+I +++R Sbjct: 628 LCGDVGFGKTEVALRAAFKAILGNKQVAFLCPTTILSMQHYKTMIARFKDFPVKIALLNR 687 Query: 686 FRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAM 745 F S KE+ QIL+++ G ID+L+GTH++L D+ FKD+GLL +DEE RFGV+ KE+IK Sbjct: 688 FTSTKEKKQILSDLKLGNIDLLVGTHRILSKDIVFKDIGLLCIDEEQRFGVKQKEKIKEY 747 Query: 746 RANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILRE 805 R +D+LTLTATPIPRTL M++ G+R LS I TPP R V+T+V E +++++++ I RE Sbjct: 748 RKTIDVLTLTATPIPRTLQMSLMGIRGLSQIETPPKNRQPVQTYVIEKNNVLIKQIIERE 807 Query: 806 ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 865 + R GQV+YLYN I A + VP AR+A+GHGQM + ELE VM F ++ FNVL Sbjct: 808 LARDGQVFYLYNRTSQIANVAYNITLSVPGARVAVGHGQMDKNELEDVMMRFVNKEFNVL 867 Query: 866 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTD 925 VCTTIIETGIDIP ANTII+E AD FGL+QL+Q++GRVGRS+ AYA+LL K + + Sbjct: 868 VCTTIIETGIDIPNANTIIVEDADKFGLSQLYQIKGRVGRSNRGAYAYLLYNPTKVLNEE 927 Query: 926 AQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDA 985 A KRL+AI +LG+G+ +A DL IRG+G++LG QSG +++IGF +YM++L++A++ Sbjct: 928 ASKRLKAIKEFTELGSGYKIAMRDLAIRGSGDILGGTQSGFIDSIGFEMYMKILQDAINE 987 Query: 986 LKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVE 1045 K G+E + + V +++ +P D++ +L Y+R+ +AKT + ++ +K E Sbjct: 988 -KMGKEDV--EAEKEIKSVNVKVDGYIPHDYVSSDIEKLELYQRLDNAKTISGVDHLKSE 1044 Query: 1046 LIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAE--KNHVNPAWLIGL 1103 ID +G LP+ TL++ +L A I L + I F + +V L L Sbjct: 1045 FIDYYGKLPEEVSTLVEKRKLDILASTEIIENLAEVKGKMEITFTKGYSQNVKGDQLFEL 1104 Query: 1104 LQK--QPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELE 1143 + + +R G K + L + +E + Q + L Sbjct: 1105 VNRLFTKPVFRQLGG---KIVIVLPKGDQWLERINQLITTLN 1143 >UniRef50_A9G788 Transcription-repair coupling factor n=3 Tax=Proteobacteria RepID=A9G788_SORC5 Length = 1271 Score = 1047 bits (2708), Expect = 0.0, Method: Composition-based stats. Identities = 433/1187 (36%), Positives = 661/1187 (55%), Gaps = 69/1187 (5%) Query: 17 RLLGELTGAACATLVAEI-AERHAGPVVLIAPDMQNALRLHDEISQFT------------ 63 R + G+A A ++ + A ++ + PD+ +A L + S Sbjct: 86 RHVTGSAGSAGALVIRRLVAAVAGRRLIALTPDVDSARALAADTSFLLVDRDADDAEAAG 145 Query: 64 ----DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQR-GVLIVPVNTLMQRVC 118 ++++ L + E PY +P + +RL+TL+ L VL+ P+ L+++V Sbjct: 146 STTFGRVLLYLPN-EASPYADVNPDRRGAQTRLATLFHLGMDLPWSVLVCPITALIRKVV 204 Query: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL 178 + HA ++ Q + RDAL +L ++GY V + G +A RGALLD++ +EL Sbjct: 205 SRDEITEHAELVIAEQEMDRDALSARLGASGYVRSPLVEDPGTFAVRGALLDVWAPSAEL 264 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK 238 P R+DF+ D + S++ F+ D QRT+ +V+ + + PA E A +E R + R +V Sbjct: 265 PVRIDFYGDIVASIKTFNPDDQRTVADVKEVWIPPAREAILTPANVERARQRVRAACDVI 324 Query: 239 RDPE----HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAER 294 P + V+ G G E + P F L SY P + L++ +A Sbjct: 325 DFPSTKARALVDDVASGRAFFGAEGYLPAFID--LASFTSYLPDDALILLEDPSSVTA-A 381 Query: 295 FQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN-- 352 + + +R P P S + + S L + L + A N N Sbjct: 382 VRNELGRAGADRSHKDREPHFPLASFYEDEAHVASWLGARAVLALHRTGVEGAAENRNSL 441 Query: 353 ----LGFQKLPDLAVQAQQKAP---------------LDALRKFLETFDG---PVVFSVE 390 + + +P LA + Q LD L + + + V+ + Sbjct: 442 ERFEVVPEDVPSLATRDQSDLERAIKTARASRGKHGALDPLVRRVVAWQEAGLRVLIAAR 501 Query: 391 SEGRREALGELLARIKI---------APQRIMRLDEASDRGRYLMI-GAAEHGFVDTVRN 440 ++ + E L LL + P AS R L++ G+ G + Sbjct: 502 AQTQVERLVALLRHRDVRVKANLGPFDPAFFDGSSSASPRDTALVVTGSLARGVIAPAEG 561 Query: 441 LALICESDLLGERVARRRQDSRRTINP--DTLIRNLAELHIGQPVVHLEHGVGRYAGMTT 498 LAL+ E ++ G R RR + + + +L L +G VVH+EHG+GRY G+ Sbjct: 562 LALVTEEEIFGARAHRRAARAAASSTKPSQAFLEDLRNLGVGDHVVHVEHGIGRYLGLVH 621 Query: 499 LEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAA 558 + G T + + + YA KLY+PV L+ I +++GG L +LGG +++ + + Sbjct: 622 KQVGSTTVDLIAVEYAGGDKLYLPVYRLNQIQKFSGGEG-TPKLDRLGGQTFAKTKARVE 680 Query: 559 EKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQ 618 + VR +A ELL +YA+R A + Y+ F +FPF+ TPDQA+AI V +D+ Sbjct: 681 KSVRKMADELLRLYAERRAATAEPVPPPDDDYRAFEATFPFDETPDQARAITEVTADLES 740 Query: 619 PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPV 678 MDRLVCGDVGFGKTEVA+RAAF A + +QVAVL PTT+LAQQHY +FR R A++P+ Sbjct: 741 GRPMDRLVCGDVGFGKTEVAIRAAFRAANAGRQVAVLCPTTVLAQQHYLSFRSRMASYPI 800 Query: 679 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH 738 + ++SRF+S +EQ ++ + +G +D++IGTH+LL DV FK LGLL+VDEE RFGV H Sbjct: 801 EVRVMSRFQSKQEQDEVSRGLRDGSVDVVIGTHRLLSKDVHFKRLGLLVVDEEQRFGVTH 860 Query: 739 KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVV 798 KERIKA++ NVD+LTL+ATPIPRTL MA+SG+RD+SII TPP R A++T V +D V+ Sbjct: 861 KERIKALKTNVDVLTLSATPIPRTLQMAVSGLRDMSIITTPPVDRRAIRTVVTRHDEAVL 920 Query: 799 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 858 REA+LRE+ RGGQV+Y+YN VE + + A RLAELVP ARI + HGQM E+ LE+ M DF Sbjct: 921 REAVLRELGRGGQVFYVYNRVEGLYERAARLAELVPSARICVAHGQMSEQSLEQAMLDFV 980 Query: 859 HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 R++VL T IIE+G+DIP ANTI+I+RAD FGL+QL+QLRGRVGRS +AY +L+ P Sbjct: 981 EGRYDVLCATAIIESGLDIPRANTILIDRADMFGLSQLYQLRGRVGRSKERAYCYLIVPP 1040 Query: 919 PKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMEL 978 P AMT +A+ R+EA+ +LG+GF +A+ DLE+RG+G+LLG EQSG++ +GF L+ ++ Sbjct: 1041 PNAMTDEARARIEALERHTELGSGFQIASLDLELRGSGDLLGAEQSGTVAQVGFELFCQM 1100 Query: 979 LENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENE 1038 L+ AV L+ EP + D+ TE+ +LLP+++I DV RLS YKR+A A + + Sbjct: 1101 LDEAVHELRG--EPVVHDV---DTELSFDADALLPEEYISDVGVRLSLYKRLAGAASTED 1155 Query: 1039 LEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPA 1098 ++++ VE+ DRFG P AR + + RL+ + ++L E + KG + E ++ A Sbjct: 1156 VQDLAVEMEDRFGPPPLEARRFVHLMRLKTELRRLKALACEASAKGVTLHLREDTPLDHA 1215 Query: 1099 WLIGLLQKQPQHYRLDGPTRL-KFIQDLSERKTRIEWVRQFMRELEE 1144 ++ L+Q + YRL RL + ++ + +E + + EL Sbjct: 1216 KVLKLVQPKASPYRLSPDMRLTRRAKEGEAFTSGLEATDKLLSELAG 1262 >UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E926_9CLOT Length = 1152 Score = 1047 bits (2707), Expect = 0.0, Method: Composition-based stats. Identities = 399/1159 (34%), Positives = 619/1159 (53%), Gaps = 43/1159 (3%) Query: 1 MPEQYRYTLPVKA-GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI 59 +P+ + V A G ++ L+ A + ++E P++++ D NA +L D+ Sbjct: 11 LPQFRQLEKTVAADGLPAMVIGLSSVHKAHFLYRLSESSDLPLLVLTDDEANAKKLSDDY 70 Query: 60 SQF-TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVC 118 +Q ++ + + ++ RL+ L ++ Q V+ + +Q Sbjct: 71 NQMAGGELSAVYPAKDFTFRPIETVSREYEYIRLNVLSRIVNRQVKVVFAGICAAVQYTL 130 Query: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL 178 P S L ++ GQ L L L AGY QV +Y+ RG ++D FP Sbjct: 131 PPSRLLEATHTIRAGQELPVGELVGMLAGAGYTRRAQVDGSAQYSVRGGIVDFFPTSGSE 190 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT--DKAAIELFRSQWRDTF- 235 P R++F+ DEID++ F++DSQR VE I + PA E + E R Sbjct: 191 PVRVEFWGDEIDTISFFELDSQRRTTPVEEIEISPATEIIFSSPEQLREGINGLIRSLGS 250 Query: 236 -----EVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNT-GDLE 289 K + +++ G + I+ + PL + P LF YF + L V+ DL+ Sbjct: 251 SPQADAAKLKLSNDIKRIDGGLDLSNIDKYIPLAYDRP-ATLFDYFESPLLFVSEWSDLK 309 Query: 290 TSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWP-RVQLKTEHLPTKA 348 SA +E + + ++ LL L +D + ++ Sbjct: 310 ESARA--------YEFQYQEDLKILLEEGELCKGLDSFVKPFASVSEQIAQGKTVFFDTF 361 Query: 349 ANANLGFQKLPDLAVQAQQKAPLDALRKFL-------ETFDGPVVFSVESEGRREALGEL 401 A+AN + + V A Q + K L V+ ++ + L Sbjct: 362 AHANHDLRLKELITVNAMQTSSWSGDLKLLCEDLADLRAQSYSVIIMTGTQKAADVLAHD 421 Query: 402 LARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDS 461 L + I ++ E + Y++ G GF +ALI + + + +++R+ Sbjct: 422 LEKEGIPSATVVPTGELTPGVVYVLAGMLSSGFEYPAAKVALITHARI--QNLSKRKVKR 479 Query: 462 RRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYV 521 R+ IR+L+++++G VVH+ HG+G + G+ L G++ +Y+ + Y LYV Sbjct: 480 RK----GEEIRSLSDINVGDFVVHVSHGIGVFEGIANLNLQGVSKDYIKIKYKGSDVLYV 535 Query: 522 PVSSLHLISRYAGGAEENA-PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEG 580 PV+ L ++S+Y G E A L++L D W++ R + + V ++A EL+ +YA+RA +G Sbjct: 536 PVTQLDMVSKYIGPKENGAVRLNRLNSDEWNKTRSRVKKAVAEMADELIRLYAERAKTKG 595 Query: 581 FAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMR 640 +AF D E + F D F +E T DQ + I + +DM M+RL+CGDVGFGKTEVA+R Sbjct: 596 YAFSKDNEWQREFEDHFEYEETEDQLRCIEEIKADMESDRPMERLLCGDVGFGKTEVALR 655 Query: 641 AAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA 700 AAF V + KQ A+L PTT+LA QHY R N+PV IE++SRFR+ KEQ Q+L ++ Sbjct: 656 AAFKCVLDSKQCAILCPTTILAWQHYQTALARIGNFPVNIELLSRFRTPKEQKQVLQKLR 715 Query: 701 EGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIP 760 G++DI+IGTH+L+Q DV F DLGL I+DEE RFGV HKER K M VD+LTL+ATPIP Sbjct: 716 TGQVDIIIGTHRLVQKDVAFSDLGLAIIDEEQRFGVTHKERFKEMFRGVDVLTLSATPIP 775 Query: 761 RTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVE 820 RTLNMAMSG+RD+S+I P R ++T+V E+D V+ +AI RE+ R GQVYY++N VE Sbjct: 776 RTLNMAMSGIRDMSVIEQAPQDRHPIQTYVIEHDYGVIADAIKRELRRDGQVYYIHNRVE 835 Query: 821 NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880 +IQ A ++++LVP+ARI I HG+M E EL R+ ++LVCTTIIETG+D+ Sbjct: 836 SIQSCAAQISKLVPDARIGIAHGKMGENELSRIWQQLMEHEIDILVCTTIIETGVDVSNC 895 Query: 881 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLG 940 NT+IIE AD+ GL+QL+QLRGRVGRS +A A+ K +T A KRL AI G Sbjct: 896 NTLIIEDADNMGLSQLYQLRGRVGRSKRRASAYFTFRRGKVLTEIASKRLSAIREFTKFG 955 Query: 941 AGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ 1000 +GF +A DLEIRGAG +LGE Q G ME +G+ +Y+ LL +AV + + P+ + Sbjct: 956 SGFRIALRDLEIRGAGSILGERQHGHMEAVGYDMYLRLLSDAVSEKQGVKPPT----KVE 1011 Query: 1001 QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTL 1060 + ++L M + +P+D+I ++ RL Y++IAS ++ + E+ ELIDRFG P + L Sbjct: 1012 ECLIDLPMEAHIPEDYIENLAQRLDIYRKIASLESHEQSLELIDELIDRFGDPPKSVQGL 1071 Query: 1061 LDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLK 1120 +DIA LR A KLG ++ ++KG V+ F KN ++ L ++ + Sbjct: 1072 IDIALLRAAAAKLGFTEI--SQKGVVMLFFPKN-LDMEVASRLAAHLKGRVMVNAGQKPH 1128 Query: 1121 FIQDLSERKTRIEWVRQFM 1139 + K ++ +R+ + Sbjct: 1129 IAVKMKGSKP-LDVIREVL 1146 >UniRef50_Q6MGN1 Transcription-repair coupling factor n=2 Tax=Proteobacteria RepID=Q6MGN1_BDEBA Length = 1172 Score = 1044 bits (2699), Expect = 0.0, Method: Composition-based stats. Identities = 373/1170 (31%), Positives = 618/1170 (52%), Gaps = 43/1170 (3%) Query: 5 YRYTLPVKAGEQRLLGELTGAACATLVAEIAER--HAGPVVLIAPDMQNALRLHDEISQF 62 G+ ++ G + A A +++ + + P +++ + A+ L + F Sbjct: 14 LERAFETTRGKIQVTGAASPLALAYFLSQTYSKKINGLPHLVVVGSHREAVTLQALLEFF 73 Query: 63 TD-QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG-VLIVPVNTLMQRVCPH 120 + L ++ PY P+ +++ R+ L + + + G + I V+ LMQ+ P Sbjct: 74 DPSRQSHILPAFDVSPYSGLYPNTQVVADRVRFLAKAQSAKAGEIFISSVDALMQKTLPV 133 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 L H+ ++ G L + L S GY V + G++A RG ++D++P P Sbjct: 134 KILKDHSKTVRAGDEL-PENLSDYFSSLGYTAAPMVEDKGQFAVRGGIVDIYPPTENQPV 192 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR- 239 R+D F D+++SLR F V QR+ +E+++ L PA E E + R + E ++ Sbjct: 193 RMDLFGDQVESLRHFSVADQRSSDEIQSFVLTPAREVLYRDETHERLLQRVRASLEGRKV 252 Query: 240 ---DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPA--NTLLVNTGDLETSAER 294 + E + + GIE+ P F+ E L +FP N ++ ++ A+ Sbjct: 253 DKAEAEETLRSLVLKNAFPGIEFLLPYFYGE-LATPADHFPGALNLWFLDPVEISRCADE 311 Query: 295 FQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANL- 353 A+ A +RP L + +++ + L L + E+ + ++ + Sbjct: 312 MWAELKADHRTSDAHVIRPEL--EDIYVNFEALAYPLNSRQVYFSSLEYFDEENSDDSRV 369 Query: 354 --------GFQKLPDLAVQAQQKAPLDA---LRKFLETFDGPVVFSVESEGRREALGELL 402 F L ++ A L ++ + + S +++ + L + Sbjct: 370 EYRTAMTQDFTNLALANAVGTEQWLQAATNKLHRWRDE-GYRIFVSTKNQSHIDRLSLVF 428 Query: 403 ARIKIAPQRIMRLD----------EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGE 452 ++++ R + + +++ + + + D G+ Sbjct: 429 EKLELKAVRTSSDEYRWDSWLQEQDREQNIVHIVPRYLAESLRLEEEKIIFLRDEDFYGK 488 Query: 453 RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLT 512 + + + + +L G VVH +HG+G+Y G+ + G+ EY+ + Sbjct: 489 KQRAKESSGAQDFQKQAKRLSFGDLKPGDLVVHTKHGIGQYEGLKIMNISGVESEYIQVG 548 Query: 513 YANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIY 572 Y + KLY+PV + + +++G L KLGG AW + + K VRD+AA+LL +Y Sbjct: 549 YKDKDKLYLPVYRVGQLQKFSGAGTSI--LDKLGGTAWEKTKAKVKSHVRDIAADLLTLY 606 Query: 573 AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632 A+RA AF ++ +F + FP+E T DQ +AIN + D+ MDRLVCGDVGF Sbjct: 607 AKRAEMHRPAFVIKEDEVLMFENGFPYEETDDQLRAINDIRKDLKSTKPMDRLVCGDVGF 666 Query: 633 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ 692 GKTEVAMRAAF A+ KQVAVL PTT+L QH++ F+ RF WPV I +++RF + E Sbjct: 667 GKTEVAMRAAFFAIQARKQVAVLAPTTVLTFQHFETFKKRFEGWPVDIRVLNRFVTPAEV 726 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 + L ++ +GK+D+++GTHKLL S + +KDLGLLI+DEE +FGV HKE+IK ++ +VD L Sbjct: 727 KKTLQDLKDGKVDLIVGTHKLLGSSIAYKDLGLLIIDEEQKFGVTHKEKIKKIKTSVDTL 786 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 TL+ATPIPRTLNMA+ G+RDLS+I T P RL +TFV ++D +R+AI EI RGGQV Sbjct: 787 TLSATPIPRTLNMALVGIRDLSLINTAPVDRLPTRTFVTKFDPETIRKAITAEISRGGQV 846 Query: 813 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 Y+++N +E+I + + ++VPEARI + HGQM E ELE+ M F H +VLVCT I+E Sbjct: 847 YFIHNRIESIYGLVDEIRQIVPEARIRVAHGQMEEHELEKAMLAFFHHEIDVLVCTAIVE 906 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 +G+D+P ANT+ I+ A FGL+QL+QLRGRVGRS +AY +L+ P + + Q+RL+ Sbjct: 907 SGMDVPRANTMFIDTAHLFGLSQLYQLRGRVGRSKTRAYCYLMMPRNHKLDKEQQERLKI 966 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP 992 I LG+G +A +DLE+RG+G +LGEEQSG + ++G+ +YM+LL A+ K Sbjct: 967 IQENTALGSGIKIAQYDLELRGSGNILGEEQSGHVNSVGYEMYMDLLNEALAEAKGESVE 1026 Query: 993 SLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGL 1052 ++ E+ L++P+L+PD +I D+ RL +YK +A + +L+ I+ EL D+FG Sbjct: 1027 DMD----LDPELNLKIPALIPDAYIKDIRIRLGYYKALADITSNEDLDRIEEELRDQFGP 1082 Query: 1053 LPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYR 1112 +P+ L+ + +R+Q ++LG+R + K + F EK ++P +I L ++ + Y Sbjct: 1083 IPEQTVNLMGLMLIRRQCKELGVRDISAGLKSISLIFTEKTKLSPEKVIQLAIRESKKYS 1142 Query: 1113 LDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 L RL E + +R + Sbjct: 1143 LTPDNRLNIKMSTITWSAVHEEIDALLRLI 1172 >UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4G9_SPHTD Length = 1173 Score = 1043 bits (2697), Expect = 0.0, Method: Composition-based stats. Identities = 427/1154 (37%), Positives = 620/1154 (53%), Gaps = 39/1154 (3%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM--VM 68 +K G + +A ++A + + PV+++ + +A + ++++ Sbjct: 26 LKPGRVLEIEGPPTSARLAILAALIAEVSHPVLIVTDRLDSAEEVTAGLAEYLPDDRDPT 85 Query: 69 NLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHAL 128 ETLPY+ + + + R+ L +L + ++ P L Q + P + + + Sbjct: 86 LWPVSETLPYELLPVDRSVSALRVELLARLARREPVPIVAPARALTQLLSPPADVSAQSW 145 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 + G+RL DA L AGY V V G+ RG ++D+FP + R++ F DE Sbjct: 146 HLAVGERLRSDAFVASLLDAGYEMVPVVQAPGQVGRRGGIIDVFPPVGDHALRIELFGDE 205 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAHEFPTD--KAAIELFRSQWRDTF--EVKRDPEHI 244 IDSLR+ D ++QR++ VE ++LP E AA+ R T EV + E Sbjct: 206 IDSLRLIDPNTQRSVRRVEHYDILPPLEVSLAQRDAALSALRQMDTTTLRPEVAEEWERS 265 Query: 245 YQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN---TLLVNTGDLETSAERFQADTLA 301 Q++ +G + G+E L Y ++V ++ S + +A Sbjct: 266 LQRLERGQVTVGLEL-LAPLLLPEPASLLDYLTMGEHLLVVVEPASVQLSITQLEAQAEE 324 Query: 302 RFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLG----FQK 357 + P P+ +L + L ++ A + Sbjct: 325 LRDALEDAGELPSGMPRP-YLDWQAVADRLSGARQIAFGPVPTHWSPPVAIIPDARPVYG 383 Query: 358 LPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMR--- 414 A + A + +R+ L V+ + E G L E+L I P+ R Sbjct: 384 RELPAYAGRLDALVADVRERLAD-GWAVILASEQSG---RLTEVLEEHDIFPRTRKRPAG 439 Query: 415 -------LDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINP 467 + + ++ G+ + L+ + ++ G R RR Sbjct: 440 NGRIAPPPEPPTPGTVEVVYSRLNGGWEHGGIKVLLLTDREMFGYRRVAAPAPRRRAARR 499 Query: 468 DTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLH 527 L+ + L GQ VVH+EHG+ RY G+ TLE G+ EYL+L YA + +LY+PV + Sbjct: 500 PPLLPS---LTPGQYVVHVEHGIARYGGLVTLEVSGVEREYLLLEYAANDRLYLPVDQID 556 Query: 528 LISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 587 I+ Y G L +LG W+R +Q+ VR++A ELL +YA R A EG AF D Sbjct: 557 RITPYEGA-GIEPKLTRLGSPEWARVKQRVRRAVREMAFELLQLYAAREATEGVAFGPDT 615 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 + + +SFP+ TP Q QAI V +DM +P MDRLVCGDVG+GKTEVA+RAAF AV+ Sbjct: 616 DWDRELEESFPYVETPGQLQAIREVKADMEKPRPMDRLVCGDVGYGKTEVALRAAFKAVN 675 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 N QVA+LVPTT+LA QHY FR R A +PVRIEM+SR RS KEQTQIL ++ G+ID++ Sbjct: 676 NGYQVAILVPTTILALQHYHTFRSRLAPFPVRIEMLSRLRSRKEQTQILQQLERGEIDVI 735 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 IGTH+LLQ DV+FK LGL+I+DEE RFGV HKE K +R NVD+LT+TATPIPRTL MA+ Sbjct: 736 IGTHRLLQRDVRFKKLGLVIIDEEQRFGVAHKEHFKRLRTNVDVLTMTATPIPRTLYMAL 795 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 SG+RDLS+I TPP R ++TFV + ++REAILREI RGGQVY+++N V++I E Sbjct: 796 SGIRDLSVITTPPQERTPIRTFVTASNDSLIREAILREISRGGQVYFVHNRVQSIYHVLE 855 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 RL +LVPEAR +GHGQM E ELE++M F F+VLVCTTIIE+G+DIP NTIII+R Sbjct: 856 RLEKLVPEARFGVGHGQMDEDELEQLMLAFMQHEFDVLVCTTIIESGVDIPNVNTIIIDR 915 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 A GL QL+QLRGRVGRSHH+AYA++L ++ +A RLEAI +LGAGF +A Sbjct: 916 AHQLGLTQLYQLRGRVGRSHHRAYAYVLYDANVPLSAEAVARLEAIQEATELGAGFQIAL 975 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR 1007 DLEIRGAG +LG EQSG + +G LY +L AV+ +K GR + V+L Sbjct: 976 RDLEIRGAGNVLGPEQSGHVAAVGLDLYTRMLATAVEEIKQGRPIE----EPEAVTVDLP 1031 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 + + +P+ ++ D R+ Y+R+A+ +T EL +++ E+IDRFG +PDP L+D+ARLR Sbjct: 1032 IEATIPESYVGDEGVRIDLYRRLAAVRTYAELRDLQEEMIDRFGPMPDPLLRLVDLARLR 1091 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE 1127 +A LGI + E I + +N A L L Y RL + Sbjct: 1092 IRANGLGITSMVEREGEVYIRPVLGSRLNQAQLRREL--GDGVYVTPNQVRLVLSRLRVN 1149 Query: 1128 RKTRIEWVRQFMRE 1141 + ++ V + E Sbjct: 1150 VREAVQGVLDAVEE 1163 >UniRef50_A6NQ58 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQ58_9BACE Length = 1169 Score = 1040 bits (2690), Expect = 0.0, Method: Composition-based stats. Identities = 391/1163 (33%), Positives = 601/1163 (51%), Gaps = 36/1163 (3%) Query: 1 MPEQYRYTLPVKAGEQ-RLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI 59 +PE R V G L+ A + A + + VV++ D A R+ ++ Sbjct: 5 IPEFQRLAAAVDGGGCPAAFTGLSPVHRAHMAAGLRQALGRSVVVLCADEAEADRMARDL 64 Query: 60 SQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCP 119 + T + V L E + + + RLS L L + +L+ + ++R P Sbjct: 65 AFLTGEQVRTLTAREFTFHHAAVVSRQWEHKRLSVLRALAAGECPLLVCTIEGALERTIP 124 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 + L + ++ G+ + L L +AGY +QV G++A RG +LD + + P Sbjct: 125 KTLLTQASQCLRVGESYDLNELADTLTAAGYTRCEQVEGVGQFALRGGILDFYSPAEDGP 184 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKA------------AIELF 227 R++FF DE DS+ +FDV++QR +E ++ +LPA E A + Sbjct: 185 IRVEFFGDEADSMGLFDVNTQRRVENRKSAEILPAAEVLPQFAPGGYAGLLEAMDGLIAR 244 Query: 228 RSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGD 287 + +D ++ + E +++++ ++ + L + + YFP + +++ + Sbjct: 245 AKRRKDGADLAKTLEEDRERLAENRSFPALDRYIALVYPH-MATAADYFPEDAVVLFSES 303 Query: 288 LETSAERFQADTLARFENRGVDPMRPLLPPQ--SLWLRVDELFSELKNWPRVQLKTEHLP 345 AER + E+ +L + +EL L+ WP V L Sbjct: 304 -PRVAERAKNYLWQLTEDAKALMEAGVLAGELSEFARTFEELCGVLEEWPVVYLDNFVGA 362 Query: 346 TKAANAN--LGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLA 403 L + A + + L ++ VV V SE R L LL Sbjct: 363 QYPRRPRTLLNLLCKQLPSYGASLETAVSDLSHYINENFSTVVL-VSSEQRALNLQALLR 421 Query: 404 RIKIAPQRIMRLDEASDRGRYLM-IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR 462 + L + G+ ++ +G G A++ E + A ++ Sbjct: 422 EQGVKAAVDFLLHKLPAPGKAVIAVGGLSGGMEYPEARCAVLTEG-----QAAGVKKKKV 476 Query: 463 RTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVP 522 + + + + A+L +G VVH HG+GRY GM + GI +Y+ + YA LYVP Sbjct: 477 KAVTNRQKLGSYADLSVGDLVVHEHHGIGRYQGMVKMPVDGIQKDYVKIAYAGADVLYVP 536 Query: 523 VSSLHLISRYAGGAE---ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 + L L+S+Y G E E L KLGG W +A+ +A + V+D+A L+ +YAQR + Sbjct: 537 ATQLDLVSKYIGAGEDAQETKKLSKLGGADWEKAKTRAKKAVKDLAKGLIQLYAQRQRQP 596 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 GFAF D E + F + F + T DQ + I + DM P MDRL+CGDVG+GKTEVA Sbjct: 597 GFAFSPDSEWMREFEEQFEYTETDDQLRCIAEIKGDMEAPRPMDRLLCGDVGYGKTEVAF 656 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 RA V + KQ A+LVPTT+LA+QHY + + RFA +PV I+++SRFR+ + + L V Sbjct: 657 RAIMKCVLDGKQAAILVPTTVLARQHYLSAKQRFAKYPVEIDVVSRFRTPAQMKETLRRV 716 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 G+ID+LIGTH+L Q DVKFKDLGLL++DEE RFGV HKE++K M VD+LTL+ATPI Sbjct: 717 EAGQIDLLIGTHRLFQKDVKFKDLGLLVIDEEQRFGVAHKEKLKEMSRQVDVLTLSATPI 776 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTLNMA+SG+RD+S + PP+ R V+T+V E+D V+ +A+ RE+ RGGQVYYL+N V Sbjct: 777 PRTLNMALSGIRDMSTLEEPPSDRQPVQTYVLEHDWGVLFDAMRRELERGGQVYYLHNRV 836 Query: 820 ENIQKAAERLAELVPE-ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 E I + A R+ E++ E + + HG+M + EL VM +VLVCTTIIETGIDI Sbjct: 837 ETITRTAARIREMLGEDVTVGVAHGKMSQEELNDVMTRMSEGEVDVLVCTTIIETGIDIS 896 Query: 879 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLED 938 ANT+IIE AD GLAQLHQ+RGRVGRS +AYA+L K ++ A KRL AI + Sbjct: 897 NANTLIIEDADKMGLAQLHQIRGRVGRSSRRAYAYLTFRRGKVLSEVASKRLGAIREFAE 956 Query: 939 LGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLT 998 G+GF +A DLEIRGAG +LG EQSG + ++G+ LY++LLE AV + + Sbjct: 957 FGSGFKIAMRDLEIRGAGNVLGPEQSGFLMSVGYDLYLKLLEEAVLEERGEKAQ-----I 1011 Query: 999 SQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPAR 1058 + +L + + +PD ++P R+ Y+RIA+ ++E + +++ ELIDR+G P P Sbjct: 1012 PAECSADLSVAASIPDRYVPSPEQRMDLYRRIAAIRSEEDADDLTDELIDRYGDPPRPVN 1071 Query: 1059 TLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTR 1118 L+ +A +R A GI ++ + + + L GL K + Sbjct: 1072 NLIAVALMRADAAACGITEISQKGLSLLFYLDGADLRRVSALCGL-DKYRSRLLFSAGEK 1130 Query: 1119 LKFIQDLSERKTRIEWVRQFMRE 1141 L + ++ R+ + E Sbjct: 1131 PYLSLRLKKGDDPLKLGRKLVEE 1153 >UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Acidaminococcus RepID=D2RLM5_ACIFE Length = 1092 Score = 1040 bits (2689), Expect = 0.0, Method: Composition-based stats. Identities = 376/1125 (33%), Positives = 583/1125 (51%), Gaps = 71/1125 (6%) Query: 19 LGELTGAACATLVAEIAE--RHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETL 76 L LTG+ A + + E + A P+V++ + ++ E++ F + M +L Sbjct: 31 LTGLTGSVKAGFLCALQETVQAAQPLVILTVNRESIRAQRRELAHFYPDLAMRELYPASL 90 Query: 77 PYDSFSPHQD-IISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 + + +++ R + L + + G++ +Q++ L L + GQ Sbjct: 91 IHGQVDTRNEQVMAERAAALEMIVRKEPGIIFATAEAAIQKLPQPESLVRENLKLAVGQE 150 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 + + + +L AGY +QV G+ A RG +LD+FP+ + R+++FD+ ID+++ F Sbjct: 151 IEQSLVVEKLVKAGYERTEQVDTLGQVAVRGDILDVFPINGKDSVRIEWFDNTIDAMKRF 210 Query: 196 DVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPA 255 D+D+QR++ + + ++P I Sbjct: 211 DLDTQRSIGTISQVGIMP---LAVPNQEIS------------------------------ 237 Query: 256 GIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLL 315 LF Y A+ L V + F + + R Sbjct: 238 --------------ASLFQYLSADQLAVLDEPV-----AFFEEC-----KKSWGDNREF- 272 Query: 316 PPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALR 375 L + + + + + P + Q L+ Sbjct: 273 --ADQLLDQETMIQQAGETHLLTVSDLGHPYFPQAPRIHVQVRAMAPYNKNTDLLQKDLK 330 Query: 376 KFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFV 435 +L+ P + + + + L E L + + + G + G+ +GF Sbjct: 331 GWLDQGIHP-LIMMGTRDKAAGLAESLKGAGLPMAFAGQFQGVPETGGQVFAGSLTNGFY 389 Query: 436 DTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAG 495 L+ ESD+ G A++++ +T + +++ G VVH G+GRY G Sbjct: 390 FWDEKWLLLTESDIFG---AQKKRRLTKTKGKGPALNYFSDIKAGDYVVHDVQGIGRYMG 446 Query: 496 MTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQ 555 + T+E G+ +YL L YA KL+VPV + L+ +Y G L +G W +A + Sbjct: 447 VETIEVNGVHRDYLQLQYAGGDKLHVPVEQVGLLHKYVGNEGTPPKLSNMGRKDWQKATR 506 Query: 556 KAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSD 615 KA + + +A ELL +YAQR G AF D + F DSFPFE TPDQ +AI + +D Sbjct: 507 KAQKAITILATELLRLYAQRKITPGHAFAPDTHWQKEFEDSFPFEETPDQLKAIAEIKAD 566 Query: 616 MCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 M +P+ M+RL+CGDVG+GKTEVA+RAAF AV + KQVAVL PTT+LAQQH F R + Sbjct: 567 MEKPVPMERLLCGDVGYGKTEVAIRAAFKAVMDGKQVAVLAPTTVLAQQHLLTFTQRMGS 626 Query: 676 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFG 735 + VR+EM+SRFR+ K+Q +I+ VAEGKID+LIGTH++L DV+F DLGLLI+DEE RFG Sbjct: 627 FGVRVEMLSRFRTPKQQREIMERVAEGKIDVLIGTHRILNPDVEFHDLGLLIIDEEQRFG 686 Query: 736 VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDS 795 V KE+IK A +D+LTL+ATPIPRTL++A+ RD+SII +PP RL V+T+V EYD Sbjct: 687 VAQKEKIKQRSAGIDVLTLSATPIPRTLHLALVKGRDMSIIESPPEDRLPVETYVAEYDD 746 Query: 796 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMN 855 +VREA+ REI RGG++YY++N +E + + A L ELVP I + HG+M E ELE VM Sbjct: 747 GMVREALEREIRRGGRIYYVHNRIEGLSRIAAHLRELVPGITIGLAHGRMTEDELEDVML 806 Query: 856 DFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLL 915 F+ F+VL+ TTIIE G+D+P ANTIII+ A++FGL+QL+Q+RGRVGRS AYA+ L Sbjct: 807 GFYQGDFDVLLSTTIIENGLDVPLANTIIIDGAENFGLSQLYQMRGRVGRSSRLAYAYFL 866 Query: 916 TPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLY 975 + ++ AQKRL+AI +LGAGF +A DLEIRGAG LLG EQ G + +GF LY Sbjct: 867 YKKDRVLSEVAQKRLQAIRDFTELGAGFKIAMRDLEIRGAGNLLGAEQHGQITGVGFDLY 926 Query: 976 MELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKT 1035 LLE ++ L+ G + ++ +E+++ + +PDD+I + +L Y R+ K Sbjct: 927 CRLLEKTINTLQNG--GNPDEPVPPDPVIEMKLDAYIPDDYIDNPRYKLELYHRLGDMK- 983 Query: 1036 ENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHV 1095 + ++ E+IDRFG P L +A LR +KL I + + F + Sbjct: 984 YEDRNDLMDEIIDRFGTPPTQVENLWRVAALRDVCRKLRIISVAVRPGEIRLAFDPHSKA 1043 Query: 1096 NPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTR-IEWVRQFM 1139 NP L L+++ L + +F+ + + + W+ + + Sbjct: 1044 NPDVLQALIREYVPRATLKMGPQPQFVLKTKGMEEQPLSWLEKNL 1088 >UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MQZ9_9FIRM Length = 1175 Score = 1040 bits (2689), Expect = 0.0, Method: Composition-based stats. Identities = 369/1126 (32%), Positives = 601/1126 (53%), Gaps = 35/1126 (3%) Query: 16 QRLLGELTGAACATLVAEI-AERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADW 73 L+ L+ A +A + E+ PV++I +A +L ++I+ Sbjct: 28 PLLVTGLSHIHKAHFLASLCYEKLPSPVLVITESEASAAKLTEDINTMCGDTAAYQFPAS 87 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKG 133 + D+ + Q+ R+ TL + + ++I +Q P L H + +K G Sbjct: 88 DLTLADTEAQSQEYEYKRIETLSAALSGKARLIISSSEAAVQLTVPKDVLEKHTVTLKAG 147 Query: 134 QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193 + D L T L SAGY D + G+++ RG+L D++P+ S+ P R++ + DEID++ Sbjct: 148 DEIKLDELATMLVSAGYTRCDMIEGKGQFSFRGSLADIYPVSSDYPVRIELWGDEIDTVA 207 Query: 194 VFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF--------EVKRDPEHIY 245 FD+D+QR ++ V+++++ P E ++ + + E + Sbjct: 208 SFDIDTQRRIDTVKSVSITPCGETIFEEGVLSGTLQTLLEKTEKNKKKNDEAAKRIRRDI 267 Query: 246 QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFEN 305 ++ G + + PL + EP +F Y A+TL+V+ T+AE + A E+ Sbjct: 268 ARLRDGISVCCLNRYFPLCYKEP-GSIFDY--ASTLIVSES--FTAAEAAKGAISAHLED 322 Query: 306 RGVDPMRPLL--PPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN-LGFQKLPDLA 362 + +L + E +KN R+ + T ++ L + A Sbjct: 323 LKLLTEDGVLCKGLDRYLMSKAEYQDTVKNKVRLYMDTFIRGGGIDLSDILKVDSIQLSA 382 Query: 363 VQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG 422 + K + L + V+F ++ + L E L + Sbjct: 383 WSGEYKMLFEELDNYSRNGYSCVIF-GGTDKAAKILAEDLHDKGYKADYAKNPKKFYLGR 441 Query: 423 RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQP 482 ++ G GF +A++ + + + ++ IR+L+++ G Sbjct: 442 ITVVEGILSAGFEYPEEKIAVLTRT----SASSSKTSAPKKKFKKGAQIRSLSDISQGDL 497 Query: 483 VVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG-GAEENAP 541 VVH +G+G + G+ L A ++ +Y+ + YA LYVPV+ L LISRY G G + Sbjct: 498 VVHGSYGIGVFEGVQKLTADKVSKDYIKIKYAGTDVLYVPVTQLDLISRYIGSGDADTVR 557 Query: 542 LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFET 601 L+KLG D W +A+ KA +++A EL+++Y++R +GFAF D EQ +F D F + Sbjct: 558 LNKLGTDTWKKAKTKAKAATQEMAKELIELYSRRMKAKGFAFSPDTEQQHIFEDHFSYVE 617 Query: 602 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLL 661 T DQ + I + DM + M+RL+CGDVGFGKTEVA+RAAF + + KQ A+LVPTT+L Sbjct: 618 TDDQLRCIEEIKHDMMRTAPMERLLCGDVGFGKTEVALRAAFKCIGDGKQCAILVPTTVL 677 Query: 662 AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 721 A QHY R + +R+E++SRFR+AKEQ IL ++ EG++D+++GTH+L+Q DVKFK Sbjct: 678 AWQHYQTVLKRMEGFDIRVELLSRFRTAKEQKIILKKLEEGELDLVVGTHRLVQDDVKFK 737 Query: 722 DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781 DLGL+I+DEE RFGV KE++K NVD+LTL+ATPIPRTLNMAMSG+RD+S+I TPP Sbjct: 738 DLGLVIIDEEQRFGVNDKEKLKEAFTNVDVLTLSATPIPRTLNMAMSGIRDMSVIETPPG 797 Query: 782 RRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 841 R + T+V E+D V+ +AI +E+ R GQVYY++N +E+I A + +VPEA I I Sbjct: 798 DRHPITTYVVEHDRGVIAQAINKELRRNGQVYYVHNRIESIYSCAADIHSMVPEANIGIA 857 Query: 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901 HG+M E EL V +VLVCTT+IETG+D+P NT+IIE AD GLAQLHQLRG Sbjct: 858 HGRMSEEELLNVWRRLIEGEIDVLVCTTLIETGVDVPNCNTLIIENADCMGLAQLHQLRG 917 Query: 902 RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961 RVGR++ +AYA+ K ++ A KRL+AI G+GF +A DLEIRGAG +LG+ Sbjct: 918 RVGRTNRRAYAYFTFRRGKVLSEIATKRLDAIREFTRFGSGFRIAMKDLEIRGAGSVLGQ 977 Query: 962 EQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVN 1021 QSG + ++G+ +Y++LL A+ + G+ P + + + +++R+ + +P+ +I + Sbjct: 978 SQSGHLASVGYDMYIKLLNEAILE-QQGKAPEI----TPECLIDIRIDAFIPEKYISNQA 1032 Query: 1022 TRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGN 1081 R+ Y++IA + + + ++ ELIDR+G +P L+++A+LR+ AQK+ + ++ + Sbjct: 1033 QRVDCYRKIAMIENDEDAYDVTDELIDRYGDVPRAVEGLIEVAKLRRIAQKMHLTEIIQS 1092 Query: 1082 EKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE 1127 + + + + + L D Sbjct: 1093 GDVMIFYPEKTDKKTMERV------SAVGGKFGKDMMLNIATDKPN 1132 >UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clostridia RepID=A4XIS4_CALS8 Length = 1143 Score = 1039 bits (2687), Expect = 0.0, Method: Composition-based stats. Identities = 383/1138 (33%), Positives = 616/1138 (54%), Gaps = 32/1138 (2%) Query: 18 LLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLP 77 L+ L A LV I ++ V+ I D V+ L + E Sbjct: 26 LVTNLGEMGKALLVHAICQKFNKKVLFITHQKSK-SEWEKRFKNLFD-KVIVLQERENPL 83 Query: 78 YDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLS 137 +SF+ +D R ++ VLI+ L+++ S +L++++ + L Sbjct: 84 INSFAKSKDSEIQRAEEFVRIFEEGFDVLILSPQNLLEKY---SDFKFESLILEENKELG 140 Query: 138 RDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDV 197 + T L GY V V + G+++ +G ++D++P+ S+ P R++FF D ID++R FDV Sbjct: 141 FEEFLTTLTRYGYERVKVVEKKGQFSQKGGIVDIYPIFSKYPVRIEFFGDTIDTIRYFDV 200 Query: 198 DSQRTLEEVEAINLLPAHEFPTD--------KAAIELFRSQWRDTFEVKRDPEHIYQQVS 249 ++Q++ E V + + A E+ K + + Q + + +++ E ++ V Sbjct: 201 ETQKSFERVCYVKIYKACEWDLSIDFSDGIKKIVADFKKLQNKLKGDARKNLEESFKDVI 260 Query: 250 KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVD 309 G I+ P ++ + +F F ++++ + + + ++ Sbjct: 261 DGAELK-IDRLYPYYY-QNFRSIFDIFGDCFVIIDEYTQVYGSLKTFEEQTEDLYKDLLE 318 Query: 310 PMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKA 369 L + +V ++ +L + +Q + + F L ++ QK Sbjct: 319 KGYVLTKMAGCYFKVYDILEKLSSSIILQTFAQSIKEIQVKDIFSFNNLREIPSYNGQKE 378 Query: 370 PLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGA 429 L K+ ++ + SE E L L + +I + + +G YL+ + Sbjct: 379 LLIEDIKYYQSKGYLINVFAGSETSLEDLKSELEKSRIEFNKADEVLT-DRQGVYLLPRS 437 Query: 430 AEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHG 489 E G + + + +R + + +L G VVH +G Sbjct: 438 VEKGIEIQNLKWVCLS---FFNVEKKKGKDVKKRPKSKKETFYTIEDLKYGSYVVHRTYG 494 Query: 490 VGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDA 549 +G++ G + G+T EYL L YAN++ LYVP ++L +I +Y G + L KLG Sbjct: 495 IGKFLGFEKITVEGVTKEYLKLEYANNSYLYVPTTNLDVIEKYIGTDDSEPKLSKLGTLE 554 Query: 550 WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAI 609 W + +QK + + VA +++++YA+R K+GF F D + F + FP+ T Q QAI Sbjct: 555 WQKQKQKVRKSLEVVAKDIVELYAKRQLKKGFKFSPDTIWQKEFEEKFPYTETEGQLQAI 614 Query: 610 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 669 + DM MDR++CGDVG+GKTEVAMRAAF AV + KQVAVLVPTT+LAQQHY F Sbjct: 615 EEIKKDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQVAVLVPTTILAQQHYMTF 674 Query: 670 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 729 R ++P+ IE++SR +S +Q +IL + +G IDI+IGTH+LL +DVKFKDLGLLI+D Sbjct: 675 VQRMKDFPITIEVLSRLKSESQQKKILKALKDGTIDIIIGTHRLLSNDVKFKDLGLLIID 734 Query: 730 EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF 789 EEH+FGV HKE+IK ++ NVD+LTLTATPIPRTLNMA+ G+RDLSII PP R V+TF Sbjct: 735 EEHKFGVEHKEKIKKLKENVDVLTLTATPIPRTLNMALLGIRDLSIIEDPPEDRFPVQTF 794 Query: 790 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE-ARIAIGHGQMRER 848 V EY+ V++EAIL+E+ RGGQV+YLYN V++I++ RL L+ E +IA HGQM ER Sbjct: 795 VMEYNEKVIKEAILKEVSRGGQVFYLYNRVKDIEEVVNRLQALLGEDIKIAYAHGQMDER 854 Query: 849 ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908 +LE V+ DF + +++VLVCTTIIE+G+D+P NT+I+E AD GLAQL+QLRGRVGRS+ Sbjct: 855 QLEEVLIDFINGKYDVLVCTTIIESGVDMPNVNTLIVEDADRLGLAQLYQLRGRVGRSNK 914 Query: 909 QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSME 968 AYA+ K ++ +A KRL AI +LG+GF +A DLEIRGAG ++G+ Q G + Sbjct: 915 LAYAYFTFRKDKVLSEEAAKRLSAIKEFTELGSGFKIAMRDLEIRGAGSIVGKLQHGHIN 974 Query: 969 TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1028 +G+ +Y+ LL + LK E + ++++R+ + + ++I D R++ YK Sbjct: 975 AVGYDMYIRLLSEEIRRLKGE-----EIQPEIEPQIDIRVNAYISSEYIDDDKERINMYK 1029 Query: 1029 RIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNE-KGGVI 1087 +I+S T+ +++EI ELIDRFG +P L+ IA ++ ++LGI + N+ + + Sbjct: 1030 KISSIDTKEDVQEIYDELIDRFGDIPKEVDNLIKIAYIKFLCKRLGILSISQNDSEKVKL 1089 Query: 1088 EFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEEN 1145 +F + ++ + LL ++ Y L F S K ++++ + +L E Sbjct: 1090 QFVAQENI--LLIKTLLCEKGILYSEGKDGTLIF----SLSKDSLDFLVNLLEDLVEK 1141 >UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BD8D Length = 1150 Score = 1039 bits (2686), Expect = 0.0, Method: Composition-based stats. Identities = 369/1112 (33%), Positives = 603/1112 (54%), Gaps = 27/1112 (2%) Query: 25 AACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPH 84 + A L+A + +++I + A L+ +++ +Q V+ E+L +S + Sbjct: 33 SDEAYLIAGSFWHNPRKILIIKNNQYEAFNLYKTLTELVNQ-VVYFPADESLRVESVAYS 91 Query: 85 QDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQ 144 +++ R++ LY + + + + ++++ + + P + +KKG + L+ Sbjct: 92 YELLGERINALYAMTQDKPMICVCHMHSMTRYITPVDLFKKSIISLKKGDTIDPLELKKM 151 Query: 145 LDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLE 204 L GY++ +V Y+ RG +LD++ + + P R++FFDDEI+ + +D DSQR Sbjct: 152 LQFIGYKNTQRVDSPFYYSRRGEVLDVYTIQYDHPVRIEFFDDEIEEISFYDKDSQRRTN 211 Query: 205 EVEAINLLPAHEFPTDKAAIELFR---SQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQ 261 ++E+I++LPA + + + +D VK D + +Q T IE + Sbjct: 212 KIESIDILPATDMMYEDDGLSQVEASIQTLKDKMTVKDDFKDELEQ----TYALDIESLK 267 Query: 262 PLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLW 321 ++ + FP +++ T A LA ++ + + + Sbjct: 268 AHDYNPRIYQYLGLFPETATIMDYARDYTIITASLASILASYKTYMEENYLYYHELEEIG 327 Query: 322 LRVDELFSELKNWPRVQLKTEHLPT---KAANANLGFQKLPDLAVQAQQKAPLDALRKFL 378 + L +L N P+ LK +++ + + + F P + A +K + L+ L Sbjct: 328 QMIRGL--KLINNPQTILKRQNVDFVRFRENDQQIMFMTQPVMISMANEKIFISQLKDLL 385 Query: 379 ETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTV 438 V+ V+ + + + L L I ++ D G L +G G Sbjct: 386 T--YNRVMIGVDEKRQIDVLVNLFTDHAIPFTLTSATNKIYD-GVNLFLGHLPCGMNFVE 442 Query: 439 RNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTT 498 L+ +L + +++ R T I + EL +G VVH +G+G+Y G+ T Sbjct: 443 EKTVLLTSQELFKVQETKKKYIKYRD---ATKISDYNELKVGDYVVHDTNGIGQYMGIET 499 Query: 499 LEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAA 558 L G+ +YL + Y + LYVPV LI +Y+ + +H LG W++ + + Sbjct: 500 LVVDGVHKDYLHIAYKGNDILYVPVEQFQLIRKYSSRDGKPPRIHALGSPKWAKEKARVR 559 Query: 559 EKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQ 618 +KV +A +L+++YA+R + GFAF+ D + F F +E TPDQAQA+ + DM Sbjct: 560 QKVDGLADDLINLYAERMRQPGFAFEPDGDLQLEFESEFGYELTPDQAQAVEEIKKDMET 619 Query: 619 PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPV 678 P MDRL+CGDVGFGKTEVA+RA F A+ + KQ A L PTT+L+ QHY + RF +PV Sbjct: 620 PRPMDRLLCGDVGFGKTEVALRACFKAIVSKKQCAFLCPTTILSSQHYRTMQKRFEKFPV 679 Query: 679 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH 738 I +++RF + KE+ QIL+++ EG ID+L+GTH++L DV+FKDLGLL +DEE RFGVR Sbjct: 680 NIALLNRFTTTKEKKQILSDLKEGNIDLLVGTHRILSKDVEFKDLGLLCIDEEQRFGVRQ 739 Query: 739 KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVV 798 KE+IK +R +D+LTLTATPIPRTL M++ G+R LS I TPP RL V+T+V E ++ Sbjct: 740 KEKIKNLRKTIDVLTLTATPIPRTLQMSIMGIRGLSQIETPPLNRLPVQTYVSEKSWALI 799 Query: 799 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 858 ++ I RE+ R GQV+YL+N ENI + A L L+P ARI +GHGQM + ELE VM DF Sbjct: 800 KQVIERELSRNGQVFYLHNRTENIYEIASTLQTLLPHARIGVGHGQMDKTELEDVMTDFV 859 Query: 859 HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 +++++LVCTTIIETGIDIP ANTIIIE AD FGLAQL+Q++GRVGRS AYA+LL Sbjct: 860 EKKYDILVCTTIIETGIDIPNANTIIIENADKFGLAQLYQIKGRVGRSARIAYAYLLYTK 919 Query: 919 PKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMEL 978 +AMT +AQKRL AI LG+G+ +A DL IRG+G++LG EQ+G ++ +GF +YM++ Sbjct: 920 DRAMTEEAQKRLTAIKEFTQLGSGYKIAMRDLSIRGSGDILGGEQAGFIDQVGFDMYMKI 979 Query: 979 LENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENE 1038 L++A+D K G+ + + S+ + + +P+D++ +L Y+R+ A Sbjct: 980 LQDAIDE-KQGKIKEDDTVPSR----NISVDGYIPEDYVESDMEKLELYQRVYKANDLEA 1034 Query: 1039 LEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEK--NHVN 1096 L+ ++ EL D +G+LP R ++ R + I ++ +G + F++ ++ Sbjct: 1035 LKRVEQELTDLYGVLPSQVRNIVVKRRFDILSHDPLIEDVKDGSQGLEMRFSKVFLEDLD 1094 Query: 1097 PAWLIGLLQKQPQHYRLD-GPTRLKFIQDLSE 1127 + + ++ L + + Sbjct: 1095 GQKFFAYVNHMFKKPQMKYTEGMLTIVSGMEP 1126 >UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamily II helicase) n=5 Tax=Dehalococcoides RepID=D2BIN1_DEHSV Length = 1154 Score = 1036 bits (2680), Expect = 0.0, Method: Composition-based stats. Identities = 400/1082 (36%), Positives = 593/1082 (54%), Gaps = 35/1082 (3%) Query: 25 AACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPH 84 A +A + R P+++I + A L ++I+ +T + L D LPY Sbjct: 41 AGRGFSLASVYRRLKCPMLVITSQPERARELLEQIAAYTGEEPGFLPDPSLLPYQRAVSD 100 Query: 85 QDIISSRLSTLYQLP----TMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDA 140 ++ ++ L + +++ V L+QR + + G + Sbjct: 101 RNSSLEKMRLAGILGGYIRSGDSRIIVTAVPALLQRYVSPEIFKQSFIQVWAGLEIEPQD 160 Query: 141 LRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ 200 L ++ GYR V G Y+ RG +LD+FP + P RL+FF + ++SLR FD SQ Sbjct: 161 LISRFQQLGYRQESIVEIPGTYSHRGGILDIFPHTEDNPVRLEFFGNTLESLRNFDPKSQ 220 Query: 201 RTLEEVEAINLLPAHEF-----PTDKAAIELFRSQWRDTF--EVKRDPEHIYQQVSKGTL 253 R+ + V + + PA E T K D E R +++G Sbjct: 221 RSGKAVNELTISPASELFHLGQLTRKDINNRLDILLTDNLNPEFSRTLSADINHLNEGLK 280 Query: 254 PAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQADTLARFENRGVDPM 311 P E++ PLF + Y P++ L+V +E +A + +R Sbjct: 281 PEYPEFFAPLF---NTSSILDYLPSDALVVLDEPASIEQAAFHLDKEAEELRSDRLSHGE 337 Query: 312 RPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPL 371 P + P+ + E+ + LK R+ + + +++ D A L Sbjct: 338 LPSVYPRP-YFNWAEISAMLKTKKRLIMASFGRESESLKL--------DFASPDNYVGRL 388 Query: 372 DALRKFLETFDGPVVFSVESEGRREALGELLARIKI-APQRIMRLDEASDRGRYLMIGAA 430 L + L G V + L ELL I A + L L+ G Sbjct: 389 SGLYEKLPELKGHTGRVVIVSHQAARLAELLKERSILAVVQTDVLTPPPPASLSLVQGIL 448 Query: 431 EHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 G+ + NL ++ +++L G RR R + ++ ++ G+ VVH++HGV Sbjct: 449 GSGWSLSD-NLHILTDAELFGFVKQRRLPSKRPSARKGVVL----DIKPGEFVVHIDHGV 503 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW 550 ++G++ + G+ EYL+L YA KLYVP + ++R+ G +E LH+LG W Sbjct: 504 ALFSGVSHMNRDGMDKEYLILQYAGGDKLYVPTDQMDRVNRFIGSGDEPPSLHRLGTQEW 563 Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 RA++KA+E + A ELLDIYA+R G+AF D Q SFP+ TPDQ +A+ Sbjct: 564 QRAKEKASESAEETARELLDIYAKRELANGYAFSADTVWQQEMEASFPYVETPDQLKALC 623 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 + DM + MDRL+ GDVG+GKTEVA+RAAF AV + KQVAVLVPTT+LAQQHY FR Sbjct: 624 DIKEDMEKTRPMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVAVLVPTTVLAQQHYTTFR 683 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 +R A +PV++E++SRFRS EQ +++ + +G++DI IGTH+LLQ+D+KFKDLGL+I+DE Sbjct: 684 ERLATFPVKVEVLSRFRSQSEQKEVVENMEKGEVDICIGTHRLLQADIKFKDLGLVIIDE 743 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 E RFGV HKE K +RA VD+LTL+ATPIPRTL+M+M G+RD+S+I TPP RL +KT V Sbjct: 744 EQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGVRDMSVIETPPGERLPIKTVV 803 Query: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 +D ++REAILRE+ R GQV+++ N V I AER+ +LVPEARI IGHGQM E +L Sbjct: 804 AAFDERLIREAILREMERNGQVFFVSNRVMGINLLAERIQKLVPEARIGIGHGQMAEDKL 863 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 VM DF +VLVCTTIIE+G+D+P ANT+II RAD FGL QL+QLRGRVGRS A Sbjct: 864 AAVMADFVRYELDVLVCTTIIESGVDVPNANTLIINRADRFGLTQLYQLRGRVGRSSQLA 923 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 YA+ L K ++ DA+KRL+ I +LGAG+ +A DLEIRGAG LLG +QSG + ++ Sbjct: 924 YAYFLYDKEKHLSGDAEKRLKTIYEAAELGAGYGIAMKDLEIRGAGTLLGVKQSGYINSV 983 Query: 971 GFSLYMELLENAVDALKAG----REPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026 GF+LY ++L AV LKA + + +++L + + +P+ +I D++ RLS Sbjct: 984 GFNLYTQMLSEAVAGLKAAGSGLSKEEIRIQNMPAPKLDLPLDAFIPEYYIQDLDLRLSI 1043 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGV 1086 Y+++++ + + E + EL DRFG++P LL RLR A+K + + V Sbjct: 1044 YQQLSTLASLAGVLEKEKELTDRFGVMPKELENLLYSFRLRLLAKKAHVETIVTEGSQIV 1103 Query: 1087 IE 1088 + Sbjct: 1104 VR 1105 >UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Veillonella RepID=D1BNT3_VEIPT Length = 1098 Score = 1032 bits (2670), Expect = 0.0, Method: Composition-based stats. Identities = 377/1099 (34%), Positives = 594/1099 (54%), Gaps = 76/1099 (6%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAE-IAERHAGPVVLIAPDMQNALRLHDEIS 60 P + + ++ L+G+ + L+++ + PVV++ D + +++ Sbjct: 13 PSFVDGLNAFQRKGKSVIYGLSGSQKSFLLSQSFSAGLTKPVVIVVHDKDHKEMWERDLA 72 Query: 61 QFTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCP 119 F V++ + + + + + ++ +++ L L + V+I + Q V Sbjct: 73 FFMPNAPVLSFPTTDHVDFTTVARSLEVQGAQMRALALLAWQEPAVVIANAEEVTQYVVS 132 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 +L G +L + RD QL + GY VDQV + G +A RG +LD++P+ S+ P Sbjct: 133 PHYLKGQSLHFALNDAIERDVALEQLVTIGYERVDQVEQRGHFAVRGDILDIYPVNSDHP 192 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR 239 R++FF DEID+LR F V++QR++ E I F K Sbjct: 193 IRIEFFGDEIDTLRFFSVENQRSI---EQIESYTVTPFFLGK------------------ 231 Query: 240 DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN-TGDLETSAERFQAD 298 S+ L SY TL+ + G ++ + ++F + Sbjct: 232 --------------------------SDADSTLLSYVKEGTLIYDEPGRIQEALKKFLKE 265 Query: 299 TLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLK--TEHLPTKAANANLGFQ 356 +N +EL + +V + +G Q Sbjct: 266 DPTHRKN---------------HCDWNELQRTVDARNQVAFTFMQQRSIGLTGFNPIGIQ 310 Query: 357 KLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD 416 + + Q D ++++ VV + ++ RRE + L I Sbjct: 311 GKTMTSFERQIPLLTDEIKQWHRLHH-QVVIVLNNQQRREGIERALEGEHIVFTHSDTW- 368 Query: 417 EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAE 476 A ++ G GF +L ++ E ++ G++ + R ++ I + Sbjct: 369 IAKPNTVIILNGLLTDGFELPNSHLVVVVEGNIYGQQKRKLRNKPKK----GQEINYFTD 424 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 L G VVH HG+G+Y G+ T+E GI +Y+ + YA KL++P ++L + +Y G Sbjct: 425 LTPGDYVVHSMHGIGKYIGLKTIETEGIHRDYIEIAYAGTDKLFLPANNLDQLQKYIGNE 484 Query: 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596 + +HK+GG W++ KA + + D+A +L++IYAQR EGFAF D+ Q F D+ Sbjct: 485 GDVPRIHKMGGRDWAKVVTKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPWQQEFEDA 544 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 FP+E T DQ QA + M +P+ MDRL+ GDVGFGKTEVAMRA F AV + KQVAVLV Sbjct: 545 FPYEETEDQLQATAEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLV 604 Query: 657 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS 716 PTT+LAQQH+ F +RFA + V++++++RFR+ E+ QIL V +G IDILIGTH LL Sbjct: 605 PTTVLAQQHFQTFLNRFAPFGVKVDVLNRFRTTSEKKQILKGVEDGSIDILIGTHSLLNK 664 Query: 717 DVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 776 V FKDLG+L+VDEE RFGV KE+ K +N+D+LTL+ATPIPRTL+M++ G+R++S+I Sbjct: 665 KVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGVREMSVI 724 Query: 777 ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 TPP RL V+T+V EYD ++ +AI RE+ RGGQVY++YN V +I E L +P Sbjct: 725 NTPPEERLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELLESALPGL 784 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 R A+ HGQM R++E +M DF+ ++VL+ T+IIETG+DIP ANTIII AD GL+QL Sbjct: 785 RYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQL 844 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 +Q+RGRVGRS +AYA+ + K ++ A+KRL+AI +LGAGF LA DLEIRGAG Sbjct: 845 YQMRGRVGRSRRRAYAYFMYRPDKILSEAAEKRLKAIEEFTELGAGFKLAMRDLEIRGAG 904 Query: 957 ELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 LLG +Q G++ ++GF +Y+ +LE A+ + +E S ++L + + + D + Sbjct: 905 NLLGSQQHGNIASVGFGMYVSMLEEAIAKAQN---KEVERDVSIDPAIDLEVDAFIDDAY 961 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076 I D ++S Y+R+ K++ +L+++ ELIDRFG DP LL IA++++QA+ LGI+ Sbjct: 962 IKDSARKISVYQRLLHIKSKEQLDDMTDELIDRFGTPTDPVDRLLRIAQIKEQARLLGIK 1021 Query: 1077 KLEGNEKGGVIEFAEKNHV 1095 + +K I + + + + Sbjct: 1022 SVVRRDKQLTIHWHDDSKM 1040 >UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Anaerococcus RepID=C2BDI7_9FIRM Length = 1162 Score = 1031 bits (2667), Expect = 0.0, Method: Composition-based stats. Identities = 351/1142 (30%), Positives = 603/1142 (52%), Gaps = 28/1142 (2%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 + LT A L I E VV I + + + + +I+Q + + + D +T Y Sbjct: 29 IQALTDGIKAHLALAIFELLGENVVFITDNPKRSEKFLQDINQISAKAKLY-PDLDTNFY 87 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 + S I+ RL L L ++ + + + ++ + +++ + + Sbjct: 88 NIKSIDDKKINQRLECLISLSKGEKFITVTNFAAIKNKLTTLDRFNKSFVIIDEESIIDV 147 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 D L + Y D V E G++A RG+++D++P+ E P R++ FDDE+DS+R+FD + Sbjct: 148 DDFINSLSALNYNSTDFVEERGDFAKRGSIIDIWPINYEDPVRIELFDDEVDSIRIFDKN 207 Query: 199 SQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK-----------RDPEHIYQQ 247 +QRT+++++ + + PA+E D + + + K + I Sbjct: 208 TQRTIKKIKNVEIGPANELLYDSDDYKKVIKAISNDIDKKEVTNTKDQKLVDKYKQIISF 267 Query: 248 VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFEN-- 305 + + A + + +E Y PA T+ + D+ E D E+ Sbjct: 268 LDQKMYVANKD-LINAYRTENYSSFIDYLPAGTIFIF-DDISRIYESVTKDDEKFLEDLT 325 Query: 306 RGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQA 365 ++ + L E++ + + T L + L + + Sbjct: 326 YQMENGEVFGSFANYLLDSSEIYKNISEKSIINF-TSILKRTKLFSPRKIIDLKTIEAEN 384 Query: 366 QQKAPLDALRK--FLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR 423 K + +R L D V S+ R+E L + D+ Sbjct: 385 FNKDIENFIRTSIDLAKRDKKVYVFAGSKSRKENLLKSFIDHDFLLAGFEENSTDFDKTP 444 Query: 424 YLMIG-AAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQP 482 ++ + G+ +L + ++ G+ +++ + + I N ++L IG Sbjct: 445 IIISDKNSSEGYYIKDVDLFVFTSKEVFGKTSSKKNNRKKVSSKN---IINYSDLEIGDY 501 Query: 483 VVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPL 542 VVH +G+G Y G+T +E + +++++ Y + KLY+PV ++L+S+Y G E L Sbjct: 502 VVHENNGIGIYKGLTKIERNDVEKDFILIEYRGNDKLYIPVDQMNLVSKYIGNRGEKPKL 561 Query: 543 HKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETT 602 LG W +++Q+A + V ++A +L+ +YA+RA ++G AF D F +SFP++ T Sbjct: 562 SALGSLQWQKSKQRAKKAVDEIADDLVKLYAKRAKEKGHAFSKDTTWQVEFENSFPYDET 621 Query: 603 PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLA 662 Q ++I + +DM MDRL+CGDVG+GKTEVA+RAAF A+ + QVA LVPTT+LA Sbjct: 622 FSQLRSIEEIKADMESENPMDRLLCGDVGYGKTEVALRAAFKAIMDGYQVAFLVPTTILA 681 Query: 663 QQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 722 QHY +RF ++P+ M+SRF + + +IL ++ GKIDI++GTH+LL DVKF Sbjct: 682 NQHYHTMVERFKDFPITCAMLSRFNTKAKDDKILKDIKSGKIDIVVGTHRLLSDDVKFNK 741 Query: 723 LGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR 782 LGLLI+DEE RFGV+HKE+ K +A++D+LTL+ATPIPRTL M++SG+RDLS + PP Sbjct: 742 LGLLIIDEEQRFGVKHKEKFKKFKASIDVLTLSATPIPRTLQMSLSGIRDLSTLDDPPEE 801 Query: 783 RLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 842 RL V T+V E+DS ++R+AIL+EI R GQVY++YN V +I+K ++ +LVPEA I I H Sbjct: 802 RLPVNTYVLEFDSGIIRDAILKEINRNGQVYFVYNRVNDIEKLFLKIKDLVPEASIEIVH 861 Query: 843 GQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGR 902 GQM R++E +M DF + ++L+ TTIIETG+DI NTI+I +D GL+QL+QL+GR Sbjct: 862 GQMSPRQIENIMMDFIDGKIDILLATTIIETGMDIKNVNTIVIYDSDLMGLSQLYQLKGR 921 Query: 903 VGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEE 962 +GR + +YA+ K +T +KRL++I D G+G+ +A DLE+RGAG LLGE Sbjct: 922 IGRGYRSSYAYFTYRSGKILTEIGEKRLKSIRDFSDFGSGYKIAMKDLELRGAGNLLGES 981 Query: 963 QSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNT 1022 QSG +E +G+ LY++ L+ AV+ ++ QT +++++ + +P+ +I D + Sbjct: 982 QSGHVEAVGYDLYVKFLQEAVEKASG---KEVKIKLENQTFIDIKIDAYIPNSYINDSSQ 1038 Query: 1023 RLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNE 1082 ++ Y RIA+ +++ + + ELID +G +P ++ ++ ++ A + G ++ Sbjct: 1039 KIEIYNRIANINDKSDYDALVEELIDVYGDIPVIVDNIMYVSLIKAIASENGFTEIREIN 1098 Query: 1083 KGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 + FA K++ L + + LD + FI + KT++ + + + Sbjct: 1099 NSIYLFFASKDNFTFEELKYINETYKGVMSLDLSDKPAFI--IPAIKTKLLDTYELLDTI 1156 Query: 1143 EE 1144 ++ Sbjct: 1157 KK 1158 >UniRef50_B0VGK6 Putative transcription-repair coupling factor n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGK6_9BACT Length = 1127 Score = 1029 bits (2661), Expect = 0.0, Method: Composition-based stats. Identities = 403/1139 (35%), Positives = 609/1139 (53%), Gaps = 58/1139 (5%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMNLADWETLP 77 + L +A A L + + ++L++ D A + D++ + L D+E LP Sbjct: 31 IYHLNQSARALLAVHLWKHTGKNIILVSQDDIIAEDIWDDLCVLIGKENAHYLPDYEILP 90 Query: 78 YDSFSPHQDIISSRLST-LYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 Y+ SPH I ++R+ T L L + + + L + + FL H L +K+G Sbjct: 91 YEERSPHYSIRATRMETFLATLNNDKSAIYSLSARALGRYLPAQKFLSRHILHLKQGMEC 150 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 D L L GY QV + + A RG ++D+F P RL+F+ DEI +RVF Sbjct: 151 EPDTLLHNLYDMGYEIQYQVSKVFQAAKRGGIIDIFSPPLTNPVRLEFWGDEIIGMRVFS 210 Query: 197 VDSQRTLEE-VEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPA 255 V +QR+LE+ + + +LPA E I ++ Sbjct: 211 VTTQRSLEQYLTELTILPARELSLSDV----------------DSGSPIIAKIRNQGFFE 254 Query: 256 GIEYWQPLFFSEPLPPLFSYFPANTLLV---NTGDLETSAERFQADTLARFENRGVDPMR 312 GIE + L +E L YF + ++ N L+ E L ++ + Sbjct: 255 GIENYYALLCNE-LQTFADYFEKDNRILVWNNFYYLQEEYETLFEQALTTWQKEAKIQGQ 313 Query: 313 PLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLD 372 +P R +++F++ ++ K+E L + L F L A A Q Sbjct: 314 GRVP------RPEQMFADWDVLTELKEKSEKLYLSQSEFELSFPTLNMRAPFASQPNFES 367 Query: 373 ALRKFLETF------DGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLM 426 L ET + +++ + + + + + +I Sbjct: 368 DLGLLAETLFSRNKEGWQNILLFDNQSQAKRMQQSIGKIPFTE----------------F 411 Query: 427 IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 G GF +L L + ++ R RR R P I N +L G VVH+ Sbjct: 412 FGVLHEGFSLEDCHLNLWTDHEIFN-RYKSRRYTPRYA--PGETIVNYEDLKPGDYVVHI 468 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLG 546 +HG+G + G+ + G E L+L YAND ++YVP L L+++Y L+KLG Sbjct: 469 DHGIGVFEGLKIIRLDGSDVECLVLRYANDDRVYVPTYQLSLVTKYVAEESTKPVLNKLG 528 Query: 547 GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606 W+ ++KAA+++ +AA+++ +YA+R+++ G A + D E + DSF +E TPDQ+ Sbjct: 529 SSKWNNTKRKAAQQIELIAADIVKLYAERSSRLGIAHQPDTEWQKELEDSFIYEDTPDQS 588 Query: 607 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 666 +A + DM P M+RL+CGDVGFGKTEVA+RAAF AV + QVAVL PTTLL +QHY Sbjct: 589 KATKEIKEDMELPAPMERLLCGDVGFGKTEVAIRAAFKAVCSGYQVAVLAPTTLLVEQHY 648 Query: 667 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 FR+R A +PV+I M SRFR + L + G IDI IGTH+LL DV+FK LGLL Sbjct: 649 RVFRERLAQYPVKIVMFSRFRKNTAMKKDLLGLKSGSIDIAIGTHRLLSKDVQFKKLGLL 708 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 I+DEEHRFGVRHKE+++A+++NVD L ++ATPIPRTLNMA+S ++++S++ T P RL V Sbjct: 709 IIDEEHRFGVRHKEKLRALQSNVDTLYMSATPIPRTLNMALSKLKEISLMQTSPKERLPV 768 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 +T + D V+++AI REI RGGQV++++N V+ I+ A L +P+ R +GH QM Sbjct: 769 RTIITPRDMEVIKDAIRREIDRGGQVFFIHNRVQTIETVATELRNAMPKVRFIVGHAQMP 828 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 E++LERVM DF + + VL+ TTIIE GIDIP ANTI+I+ A+ FGLAQL+Q+RGRVGRS Sbjct: 829 EQQLERVMADFWAKEYQVLISTTIIENGIDIPNANTILIDNAETFGLAQLYQMRGRVGRS 888 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 + +AYA+LL K TT A+KRLEA+ + LGAGF +A DLE+RGAG +LG +QSG Sbjct: 889 NRRAYAYLLI--SKGTTTVARKRLEALTQYDYLGAGFQVALRDLELRGAGTILGTKQSGI 946 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQT--EVELRMPSLLPDDFIPDVNTRL 1024 ++ IGF+ Y +L NA+ A++ G L + S T +V + P D+I D RL Sbjct: 947 IQAIGFNYYNRILANAIQAVEKGETIKLFNDESPDTRRKVRTEIDLYFPPDYIDDDEERL 1006 Query: 1025 SFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKG 1084 YKR++ +T ++ ++VEL+DRFG LP+ A LL+ +L Q A+KL ++ + Sbjct: 1007 RIYKRLSELETLEDINNLEVELLDRFGPLPEQASWLLNYFQLSQLAKKLSLKDCQVKHDS 1066 Query: 1085 GVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELE 1143 ++EF K + L+ K Q R + LK I DL + ++ + L+ Sbjct: 1067 FIMEFDAKKLPSQEQLLHFTTKIKQPLRFEAGKNLKVIIDLDPEASYLQQFETAIEILK 1125 >UniRef50_D0LU01 Transcription-repair coupling factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU01_HALO1 Length = 1257 Score = 1028 bits (2659), Expect = 0.0, Method: Composition-based stats. Identities = 429/1239 (34%), Positives = 639/1239 (51%), Gaps = 128/1239 (10%) Query: 21 ELTGAACATLVAEIAERH---AGPVVLIAPDMQNALRLHDEISQFTDQ------------ 65 LT A+ A + A +AER AGPVV++APD +A L +++ F Sbjct: 25 GLTRASLALVAARLAERADERAGPVVVVAPDESSARDLAQDVAFFLPHAQHAAAGTEPLA 84 Query: 66 --MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQR---GVLIVPVNTLMQRVCPH 120 ++L +T PY SP + ++ R++ L +L V+++ L++RV P Sbjct: 85 PPPALHLPALDTSPYAELSPDRLALAQRMAGLVRLARGGALLGPVVVLSAPALLRRVMPR 144 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 L V+ + RDA +L AGY V + G +A RG ++D+F P Sbjct: 145 EALLARTAVLARDDEFDRDATAERLLRAGYTRAPVVEDAGTFAVRGGVIDVFTPLYRYPA 204 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R++ F D ++S+R+FD +SQRTL +++ + + P E + A R + D + Sbjct: 205 RIELFGDMVESIRLFDPESQRTLRDLDQVYVHPVRETVVSEGA--EVRRRILDAADAAHH 262 Query: 241 PE----HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF------PANTLLVNTGDLET 290 P + +++ G GIE P F + L PL SY PA ++V+ + Sbjct: 263 PSAETRRVLERIDSGEEFVGIETLTPAFHTH-LAPLASYLVAGDAPPACWVIVDPDAIGQ 321 Query: 291 SAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAAN 350 +AE R+ R +D R PP ++ DEL + L +L+ L A Sbjct: 322 AAEDEHDVAEDRYRER-LDDGRLAFPPSDHYVSPDELRATLAEHAY-RLEARGLEMYQAA 379 Query: 351 ANLGFQKLPDLAVQAQQ------------------------------------------- 367 A+ ++A + Sbjct: 380 ADPLLSASDEMAAAPEAKSKPKAKSKPKPKPEQDGAQLMRFGVDDNRLLRASLERTRRQA 439 Query: 368 -KAPLDALRKFLETFDGP---VVFSVESEGRREALGELLARIK----IAPQRIMRLDEAS 419 + L + + + G + + + R L LL+ + + +R + +D S Sbjct: 440 ADELMKPLVEAITAWRGDAYCIAVAAGTMARARQLAGLLSDYECTAHVIEERSVDVDALS 499 Query: 420 DRGR-YLMIGAAEHGFVDTVRNLALICESDLLGER----VARRRQDSRRTINPDTLIRNL 474 + G GF L ++ ++ G R V +R R I + Sbjct: 500 PGAPPVIYPGELSAGFALRTDKLVMLTADEIFGPRRRTSVRQRAAARRARKALAGGISDF 559 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAG--GITGEYLMLTYANDAKLYVPVSSLHLISRY 532 ++L G VVH HG+G Y G+ L G ++L + Y + Y+PV L +SRY Sbjct: 560 SQLAPGDHVVHAMHGIGLYRGLAKLPVSATGPAVDFLHIEYRGG-QFYLPVYRLGEVSRY 618 Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 G L KLGG W +AR+KA+ +V+ +A ELL +YAQRAA+ G A+ ++ Sbjct: 619 VGAEGHAPRLDKLGGVTWQKARKKASAQVKALAEELLKLYAQRAAQPGHAYPSSDHMFRE 678 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F +F FE TPDQ +AI+ VL+DM MDRLVCGDVG+GKTEVA+RA F AV KQ Sbjct: 679 FEATFAFEETPDQQRAIDEVLADMESERPMDRLVCGDVGYGKTEVALRACFKAVAGGKQA 738 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 A+L PTT+L +QHY +RFA WPV + +SRF+S EQ + +A G +D+++GTH+ Sbjct: 739 ALLAPTTVLVEQHYATVCERFAGWPVSVGRLSRFQSRAEQLDTIKGLAAGTVDLVVGTHR 798 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 +L DV+FKDLGLL++DEE RFGV HKER+K +R +D+LTLTATPIPRTL++AMSG+RD Sbjct: 799 VLSKDVRFKDLGLLVIDEEQRFGVTHKERLKRVRTQLDVLTLTATPIPRTLHLAMSGLRD 858 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVE------------ 820 LSIIATPPA R AV+TFV + D V+RE I RE+ RGGQV+++ + Sbjct: 859 LSIIATPPADRRAVRTFVAQVDDGVLREGIRRELGRGGQVFFVCPRIGADPAPSKGKVKG 918 Query: 821 -----------------NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN 863 ++ + AE L LVPEAR+A+ HGQM LE+VM DF Sbjct: 919 KGKSQGETARRVRRGDISLDEWAEHLRALVPEARVAVAHGQMSAEALEKVMIDFVSGNLE 978 Query: 864 VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMT 923 +LV TTI+E+G+DI ANT+ ++RAD FGLAQL+QLRGR+GRS +A+ +LL P P+ ++ Sbjct: 979 ILVSTTIVESGLDIARANTMFVDRADSFGLAQLYQLRGRIGRSKQRAFCYLLVPPPEKLS 1038 Query: 924 TDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAV 983 +DA++RLE + +LGAGF +A+HDLEIRG GELLG +QSG++ +GF Y +LE AV Sbjct: 1039 SDARRRLETLQRFSELGAGFQIASHDLEIRGGGELLGAKQSGAIAAVGFEAYAAMLEEAV 1098 Query: 984 DALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIK 1043 L++G + + E+ + +P +PD++IPD RL YKR++ A+ E+EL+ + Sbjct: 1099 AELRSGDAGLVR---PRDPELNVDVPGYIPDEYIPDTGQRLDLYKRLSDAEDEDELKILV 1155 Query: 1044 VELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGL 1103 E+ DR+G LPD L D+ L+ A+ L + LE + + AE + P L L Sbjct: 1156 EEITDRYGELPDEVELLADLMVLKIHARTLRAQSLELTQSRMSLALAEDTPLAPQTLASL 1215 Query: 1104 LQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 +K + +RL RL E + R + EL Sbjct: 1216 ARK--KAFRLTPDMRLVRNFTAEEGERPSASARACLLEL 1252 >UniRef50_C8PBN6 Transcription-repair-coupling factor n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PBN6_9LACO Length = 1110 Score = 1028 bits (2658), Expect = 0.0, Method: Composition-based stats. Identities = 359/1090 (32%), Positives = 581/1090 (53%), Gaps = 55/1090 (5%) Query: 6 RYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTD 64 + V + +L + A ++ E+ R P++++A D A +++ + F + Sbjct: 15 NFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSSLVELFEE 74 Query: 65 QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLH 124 MV L + D +S RL + L T Q+G++I L + Sbjct: 75 NMVHFFPVEPLLETQAAVSSLDELSQRLDAMSFLLTKQKGIVISTPQALQYPLPAAIKFK 134 Query: 125 GHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDF 184 ++L +K Q + + L GY+ D V GE+A RG +LD++P+ PYR++F Sbjct: 135 ANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFALRGDILDIYPINIAYPYRIEF 194 Query: 185 FDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHI 244 FDDEID++R F+ SQRT + + + + PA + + Sbjct: 195 FDDEIDNIRTFNSVSQRTKDSLTEVVIEPA-----------------------DDQLDKL 231 Query: 245 YQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFE 304 YQ +E + Y + ++ D+ + + Sbjct: 232 YQ-------------------NEDYTTILDYLTESG-IICFDDIRAIRQNIVQIDARNRD 271 Query: 305 NRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQ 364 + + + + + + K + + + + NL ++ Sbjct: 272 YLAHETSTNIKNSRLDFTSIFNQIVQAKIYSSLFQVSVNDLKIDQLLNLHTREPQQFF-- 329 Query: 365 AQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY 424 Q + + E V+ ++ R + + A I I ++ R Sbjct: 330 -SQMSLIKNELSVYELQQQTVIIQADNLVRAKQIKSTFADYGID-ITIAAENKLIPNKRQ 387 Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 +++ GFV +L + E DL + + +++ IR+ EL+ G VV Sbjct: 388 IIVDNFNQGFVLPRISLVYLTEHDLFNRQPHIHK--KIKSLENAQQIRSYQELNPGDYVV 445 Query: 485 HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544 H+ HG+G + G+ TLE+ G G+Y+ +TY N +L+VP L ++ +Y + ++K Sbjct: 446 HINHGIGIFEGIKTLESNGQKGDYITITYRNHDQLFVPADQLGVVQKYVASDGKIPKINK 505 Query: 545 LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604 LGG+ W++ + + EK+ D+A ELL IYA RA ++GFAF D E + F +FP+ TPD Sbjct: 506 LGGNEWAKTKCRVQEKIEDIADELLAIYAHRATEKGFAFLPDDELQRDFEAAFPYLETPD 565 Query: 605 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 664 Q +AI + DM + MDRL+ GDVGFGKTEVA+RAAF A+D+ KQVA LVPTT+LA+Q Sbjct: 566 QIKAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILAEQ 625 Query: 665 HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 724 HY +RF ++PV + M+ RF++ KE +I ++ GKIDI++GTH++L D+KFK+LG Sbjct: 626 HYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKNLG 685 Query: 725 LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784 LLI+DEE RFGV+HKE++K ++ N+D+LTLTATPIPRTL+M+M G+RDLS++ TPPA R Sbjct: 686 LLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVMETPPANRY 745 Query: 785 AVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 844 ++T+V E +VREA LRE+ R GQ+++L+N +++I + L++L+PEARI HG+ Sbjct: 746 PIQTYVTEETPNIVREACLRELARNGQIFFLHNKIQDIDQKVAYLSQLIPEARIEYIHGR 805 Query: 845 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 M ER+LE +M F ++F++LV TTIIETG+D+P NT+++E AD +GL+QL+QLRGR+G Sbjct: 806 MSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQLYQLRGRIG 865 Query: 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 964 RS AYA+ L K +T ++KRL AI LG+GF +A DL IRGAG +LG++Q Sbjct: 866 RSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGAGNILGKQQH 925 Query: 965 GSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRL 1024 G ++++G+ LY ++L+ + + + EV + + + +P ++I ++ Sbjct: 926 GFIDSVGYDLYAQMLDQTIKQKRGDK-----VCHKTNAEVRINLEAYIPTEYISSQKQKI 980 Query: 1025 SFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKG 1084 FYK+I A +++I ELIDRFG P LL+IA ++ A I + +K Sbjct: 981 EFYKKIKHANDVKAIDDIADELIDRFGTYPKSVENLLNIATIKVLADTAQILSITNIDKK 1040 Query: 1085 GVIEFAEKNH 1094 I +K Sbjct: 1041 IDIVLDQKAS 1050 >UniRef50_C4LHL4 Transcription-repair coupling factor n=5 Tax=Bacteria RepID=C4LHL4_CORK4 Length = 1281 Score = 1027 bits (2655), Expect = 0.0, Method: Composition-based stats. Identities = 408/1138 (35%), Positives = 593/1138 (52%), Gaps = 70/1138 (6%) Query: 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADW 73 GE RL A + + IAE+ VV++ + A L E+ V W Sbjct: 63 GEPRLHISAIDEARSWVARAIAEKSV--VVIVTATSREAQDLTAELRDMMGDAVAMFPAW 120 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-------GVLIVPVNTLMQRVCPHSFLHGH 126 ETLP++ SP + + +RL L +L +++ P + +Q + Sbjct: 121 ETLPHERLSPGSETVGARLKVLRRLAHPHDIPGEQPIRIVVAPARSFIQPIM-KGLGERE 179 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 +++ + + T+L GY+HVD V + GE+A RG ++D+FP +ELP R + + Sbjct: 180 PIILA--EDTDVTGIATRLAEMGYQHVDLVGKRGEFAVRGGVVDIFPSTAELPVRAELWG 237 Query: 187 DEIDSLRVFDVDSQRTLEEVE--AINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHI 244 DEI LR F V QRT+E + A+ + P E D A R T Sbjct: 238 DEISDLRAFSVGDQRTIENFDPGAVPVYPCRELRIDDAVRARAEKMAR-THASNATLADA 296 Query: 245 YQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQ-------- 296 ++S+G G+E P+ F P+ L A V T L S E+ Q Sbjct: 297 LTKISEGVAVEGMESLIPVLFDGPMVTLPEEVAAADPSVTTTVLVMSPEKVQRRADDLIA 356 Query: 297 ---ADTLARFENRGVDPMRPLLP---------------PQSLWLRVDEL-----FSELKN 333 A +E + P+ QS + + + L Sbjct: 357 TGKEFVKAGWEAAAMGAESPIDTAALAEAEDGNDDLNVDQSAYRSLGAMEKTAEHHGLSW 416 Query: 334 WPRVQLKTEHLPTKAANANLGFQKLPDLAV-QAQQKAPLDALRKFLETFDGPVVFSVESE 392 W ++ L F P + + L + G +VF+ + Sbjct: 417 WTCAPPGFLGSAEASSTLELDFSTGPQPKGKPGDVEKAMSELHDHV-AHGGRLVFTALTP 475 Query: 393 GRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHG-----FVDTVRNLALICES 447 + + I S G+ +I A HG VD R L ++ E+ Sbjct: 476 ASAQRMSGRFREAGIGVTPDADPQNPSAPGKATVIRAVLHGGLVIPHVDDARPLLVVAET 535 Query: 448 DLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAG----G 503 D G R+ RR + L+ L+ G VVH HG+GR+ M G Sbjct: 536 DFTGNRIVAYGDGRRRPWRKRNRVDPLS-LNPGDLVVHETHGIGRFVKMQERTVGKGADA 594 Query: 504 ITGEYLMLTYAND------AKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKA 557 EY++L YA LYVP+ SL L+SRY GG EN L K+GG W ++KA Sbjct: 595 TRREYMVLEYAPSKRGGAADHLYVPMDSLDLLSRYVGG--ENPSLSKMGGSDWKNTKKKA 652 Query: 558 AEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMC 617 VRD+AA+L+ +YA+R A G+AF D + D+FPF T DQ AI AV DM Sbjct: 653 RAAVRDIAADLVQLYAKRQAAPGYAFSPDTPWQREMEDNFPFTETEDQYNAIEAVKEDME 712 Query: 618 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 +P+ MDR++ GDVG+GKTEVA+RAAF AV + KQV +LVPTTLLAQQH+ F +R +P Sbjct: 713 KPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVLLVPTTLLAQQHFATFSERMEGFP 772 Query: 678 VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVR 737 + I +SRF + K+ ++L +AEG++DI+IGTH+LLQ+ V++K+LGL+IVDEE RFGV Sbjct: 773 ITIRQLSRFTTPKQAREVLTGLAEGQVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVE 832 Query: 738 HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV 797 HKE IKA+R++VD+LT++ATPIPRTL M+M+G+RD+S I TPP R V T+V + Sbjct: 833 HKEHIKALRSHVDMLTMSATPIPRTLEMSMAGIRDMSTILTPPEDRHPVLTYVGVQEDKQ 892 Query: 798 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 857 + AI RE+LR GQV+Y++N V +I++ A+ + ELVPEAR+ + HGQM E +LE + F Sbjct: 893 IAAAIRRELLRDGQVFYVHNRVRSIEQVAQHIRELVPEARVVVAHGQMNEDQLENTVEGF 952 Query: 858 HHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP 917 + ++VLVCTTI+ETG+DI ANT+I+E A H GLAQLHQLRGRVGRS + YA+ L P Sbjct: 953 WDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLAQLHQLRGRVGRSRERGYAYFLYP 1012 Query: 918 HPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYME 977 + +T + RL IA DLGAG A+A DLE+RGAG +LG EQSG + +GF LY+ Sbjct: 1013 PSQTLTETSYDRLSTIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVR 1072 Query: 978 LLENAVDALKA---GREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK 1034 L+ AV+A KA G+ D +++T +++ + + +P +I RL+ Y+ +A AK Sbjct: 1073 LVGEAVEAFKAMADGKPIDGSDKENKETRIDINVDAHIPTSYIASERLRLAAYRDLAQAK 1132 Query: 1035 TENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG-NEKGGVIEFAE 1091 E L+ ++ EL+DR+G P LL +ARLR ++ G+ + I F+ Sbjct: 1133 NEEALQNVRAELVDRYGQPPQEIDRLLAVARLRMVCRECGVTDVVATGANKAAISFSP 1190 >UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Ruminococcaceae RepID=C7H318_9FIRM Length = 1155 Score = 1026 bits (2654), Expect = 0.0, Method: Composition-based stats. Identities = 377/1137 (33%), Positives = 577/1137 (50%), Gaps = 25/1137 (2%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 L L A A L A + + + ++ P A D++ + + Sbjct: 27 LFGLPPAGRALLYAALQKDLDRVLCIVTPGEAEATHFADDLKAL-GLTAAVFPPRDFMLR 85 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 ++ RLS L L + + VP L+Q P + L +K G +R Sbjct: 86 PVEGAGREYEYRRLSVLGALAGGRLNAVCVPAEALLQYTVPRDEFLRNTLTLKPGMVYNR 145 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 +AL +L +AGY QV G+++ RG ++D++ P R++++DDEIDSL FD+ Sbjct: 146 EALVARLFAAGYVRRSQVDGPGQFSVRGDIVDIYAPDMHQPARVEYWDDEIDSLASFDLL 205 Query: 199 SQRTLEEVEAINLLPAHEFPT--DKAAIELFRSQWRDTFEVKRDP-----EHIYQQVSKG 251 +QR +E I L PA E E R + KR E Q+ G Sbjct: 206 TQRRDGSLEKIYLSPAREVLFGSTAETAEALRGAIKKARGKKRTAMEKATEADLAQLDSG 265 Query: 252 TLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPM 311 +P ++ + + + +P L + + +++ A++ ++ Sbjct: 266 LMPEAMDKYYGIRYPQP-ATLLDHLDSPIFVLDEVGGIRDAQKATEYRRGEELTGLLEEG 324 Query: 312 RPLLPPQSLWLRVDELFSELKNWPRV--QLKTEHLPTKAANANLGFQKLPDLAVQAQQKA 369 L+ +D+L + + + + + + + Sbjct: 325 VLCPGLDVLYQTMDDLAIAAQKQSTLLCENFLRGMNEFKLKDLINVEAFAAPNWGGDLAS 384 Query: 370 PLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGA 429 + L + +FS +G +L K + R + ++ G Sbjct: 385 LREDLDPLIAQGYAVTLFSGTPKGAAALTRDL--TDKGYSVSMSRDVRPAKGIVQVLPGH 442 Query: 430 AEHGFVDTVRNLALICES-DLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEH 488 G + A+I L E A + ++ N + +L+++ G VVH H Sbjct: 443 LTAGCTFPFAHAAVISSRRHGLDEEAAAENKRRKKNKNA---LSSLSDIKPGDYVVHQSH 499 Query: 489 GVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG-GAEENAPLHKLGG 547 G+G YAG+ LE G +YL + Y+ LYVPV+ L L+SRY G EE L KLGG Sbjct: 500 GIGMYAGIQRLEVQGAIKDYLKIQYSGSDVLYVPVTQLDLLSRYTAPGDEEKVKLAKLGG 559 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607 W R R K + ++A EL+++YA+R +G+AF D + F F ++ T DQ Sbjct: 560 AEWQRTRAKVKKAAEEMAQELIELYARRRQAQGYAFPPDGDWQNDFETRFEYDETDDQLH 619 Query: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667 A + DM +P MDRL+CGDVG GKTEVA+RAAF V KQ A+L PTTLLA QHY+ Sbjct: 620 ATAEIKQDMEKPYPMDRLLCGDVGVGKTEVALRAAFKCVMGGKQCALLAPTTLLAWQHYN 679 Query: 668 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727 R +PV+I M+SRFR+AK+Q + L + G +DI++GTH+LL DV+F DLGL+I Sbjct: 680 TLLSRMEAFPVKIGMLSRFRTAKQQKETLRGLQSGSVDIVVGTHRLLSKDVRFHDLGLVI 739 Query: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787 +DEE RFGV+HKE++K VD+LTL+ATPIPRTLNMAMSG+RDLS I PP R V+ Sbjct: 740 IDEEQRFGVKHKEKLKENFIGVDMLTLSATPIPRTLNMAMSGIRDLSTIEQPPIERQPVE 799 Query: 788 TFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 847 TFV EY+ +++ EA+ +E+ RGGQVYYL+N V+NI+ A +++LVP AR+ I HG+M E Sbjct: 800 TFVLEYNDVILAEAMKKELARGGQVYYLHNRVDNIESTAAHVSQLVPGARVGIAHGKMTE 859 Query: 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 EL V + ++LVCTT+IETGID+ NT+IIE AD GLAQL+Q+RGRVGRS Sbjct: 860 EELNPVWQHLLNGEIDILVCTTLIETGIDVRNCNTLIIEDADRMGLAQLYQIRGRVGRSG 919 Query: 908 HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSM 967 +AYA+ K +T AQKRL AI G+GF +A DL+IRGAG LLG Q G M Sbjct: 920 RKAYAYFTFRRDKTLTDIAQKRLSAIREFTAFGSGFRIAMRDLQIRGAGSLLGHSQHGHM 979 Query: 968 ETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFY 1027 E +G+ LY+++L A+ K EP D + ++LR+ + +P+ +I D R+ Y Sbjct: 980 EAVGYDLYVKMLGQAIARAKG--EPVQRD--KSECLIDLRVDAYIPEKYIADGPGRIEAY 1035 Query: 1028 KRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVI 1087 KRIA+ +T + ++ ELIDR+G P L++++ R QA +G+ ++ + V+ Sbjct: 1036 KRIAAIQTPEDAADVLDELIDRYGDPPPSVSDLVNVSLARVQATAVGVYEVTQKKDTLVL 1095 Query: 1088 EFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 + ++ + GLL + L + + +E ++ ++ + E Sbjct: 1096 Q---VEQLDLRMIQGLLVAFNGRVVTGAGAKPYLSVTLQKEEKPLELLQSILKAMAE 1149 >UniRef50_Q04H97 Transcription-repair coupling factor (Superfamily II helicase) n=9 Tax=Lactobacillales RepID=Q04H97_OENOB Length = 1188 Score = 1026 bits (2652), Expect = 0.0, Method: Composition-based stats. Identities = 382/1156 (33%), Positives = 629/1156 (54%), Gaps = 39/1156 (3%) Query: 17 RLLGELTGAACATLVAEI-----AERHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNL 70 +L+ + A L A + AE+++ ++L+ A +L ++ D+ V + Sbjct: 29 QLISGVNDTPKAALAAGVFVRLKAEKNSKKILLLTDTQFRADQLTSDLEALLEDENVFEM 88 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVM 130 E+L ++ +D SR+ L L + + +++VP++ L +R F L Sbjct: 89 QSEESLATETAVASRDADLSRVLALRALLSKENSIVVVPLSGLSRRYPDPEFFQQAVLDF 148 Query: 131 KKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEID 190 K ++ L +L GY V GE++ RG ++D++P+ + P RLDFFDDE++ Sbjct: 149 KIANSYPQEQLAKKLIEMGYNKQTLVANPGEFSVRGEIVDIYPINFDEPIRLDFFDDELE 208 Query: 191 SLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF----------EVKRD 240 S+R FD DSQ++L +++ ++ P +F +A Q F E K+ Sbjct: 209 SMRTFDADSQKSLNKIKQASVSPVSDFLLPRAEFSDGLKQLEQAFVDYLNKLKGAEKKKL 268 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF-PANTLLVNTGDLETSAERFQADT 299 E + + P +F Y + +L++ Q Sbjct: 269 TEFFNPLLEAAKHFSYGHELLPFSEFFLKHSIFEYLQSEDLILIDDFARINDQTNIQEKK 328 Query: 300 LARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPT------KAANANL 353 A + + + LLP + + L + + +++ P A + Sbjct: 329 NAEWITDRLREFK-LLPDLKVKIDGINLIKKSQQKLSKKIQKFVNPKIYLSNLTRGLAGI 387 Query: 354 GFQKLPDLAVQAQQKAP--LDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQR 411 F L + Q+ + AL+ LE++ + RE L L + Sbjct: 388 TFTSRTQLITRQMQQYFGQMPALKLDLESYRKRDFTVLLQASNRERLLSLQRTLHDFGMN 447 Query: 412 IMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLI 471 D+ L IG+ HGF + ++ E++L + ++R +T + I Sbjct: 448 FAITDDILTGTAQLQIGSLSHGFELPEEKIVVMTETELFAK--VKKRVPRHQTFSNAEKI 505 Query: 472 RNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISR 531 + EL G VVH+ HG+GRY G+TTLEA G +Y+ + YA AK++VPV+ L+L+ + Sbjct: 506 TSYTELKTGDYVVHVNHGIGRYEGLTTLEANGGKQDYITIAYAQKAKIFVPVTHLNLVQK 565 Query: 532 YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 591 Y G A+ ++ L W++ +++ KV D+A EL+ +Y++R + G+AF D ++ Q Sbjct: 566 YIGAADGRPKVNSLNSTDWAKTKRRVTAKVEDIADELIALYSKREGEVGYAFSVDDQRQQ 625 Query: 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ 651 F D F + T DQ ++I + SDM MDRL+ GDVGFGKTEVA RAAF A+++HKQ Sbjct: 626 EFDDGFAYPETVDQLRSIKEIKSDMENKKPMDRLLVGDVGFGKTEVAFRAAFKAIEDHKQ 685 Query: 652 VAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 VA L PTT+L+QQHY +RF+++P ++I M+SRF +A + +++ ++ ++D++IGT Sbjct: 686 VAFLTPTTILSQQHYQTAIERFSDFPEIKIAMLSRFNTAGQNKEVIKKLKAHQLDMVIGT 745 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H+LL DV F DLGLLI+DEE RFGV+HKE+IK +RANVD+LTLTATPIPRTLNMA+ G Sbjct: 746 HRLLSKDVAFDDLGLLIIDEEQRFGVKHKEKIKQLRANVDVLTLTATPIPRTLNMALVGA 805 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 RDLS++ TPPA R ++T+V E + V+ +AI +E+ RGGQ ++L+N V++I++ + Sbjct: 806 RDLSVLETPPANRFPIQTYVLEENWPVIADAIEKELSRGGQTFFLHNRVQDIERTVGEIQ 865 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 +VP+A + HG+M E +LE V+ DF + ++VLV TTIIETG+DIP ANT+I+E ++ Sbjct: 866 RIVPDANVGYIHGRMNETQLEDVLMDFLNGIYDVLVTTTIIETGVDIPNANTLIVENSER 925 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 FGL+QL+QLRGR+GRS+ AYA+ P + T DAQKRLEAI +LG+GF LA DL Sbjct: 926 FGLSQLYQLRGRIGRSNRLAYAYFTYPGDRQPTEDAQKRLEAIRDFTELGSGFKLAMRDL 985 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS 1010 IRGAG+LLG++Q G ++++G+ LY ++L+ AV + + ++ E+ L + + Sbjct: 986 SIRGAGDLLGKQQHGFIDSVGYELYQQMLQEAVSQKQGKDKKVMQT----NAEIVLNIEA 1041 Query: 1011 LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQA 1070 LLPD ++ D + ++ Y+RI ++T+ + E++ +LIDRFG +P+ L +A L+ Sbjct: 1042 LLPDSYVNDSSQKVELYQRIRKSRTDEQFNEVRQDLIDRFGPIPEVVDNLFALAHLKNAT 1101 Query: 1071 QKLGIRKLEGNEKGGVIEFAEKNH--VNPAWLIGLLQKQPQHYRLDGPT----RLKFIQD 1124 + L G++ I F+ + + + L+ P R+ +L I + Sbjct: 1102 DAANVINLHGDDSQIRIIFSRRVSQILAGETIFKTLKGLPYKVRVKAVDDQKLQLTVILN 1161 Query: 1125 LSERKTRIEWVRQFMR 1140 E+ I+ + +++ Sbjct: 1162 EDEKLVYIDKITKYLE 1177 >UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Corynebacterineae RepID=MFD_MYCBO Length = 1234 Score = 1025 bits (2651), Expect = 0.0, Method: Composition-based stats. Identities = 394/1132 (34%), Positives = 585/1132 (51%), Gaps = 49/1132 (4%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSF 81 L A A L+ A GP++++ + A L E+ V L WETLP++ Sbjct: 42 LIAPASARLLVASALARQGPLLVVTATGREADDLAAELRGVFGDAVALLPSWETLPHERL 101 Query: 82 SPHQDIISSRLSTLYQLPTMQR-------GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 SP D + +RL L +L GV++ V +L+Q + P + L + G Sbjct: 102 SPGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVRSLLQPMTPQLGMME-PLTLTVGD 160 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 194 D + +L Y VD V GE+A RG +LD+F +E P R++F+ DEI +R+ Sbjct: 161 ESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRM 220 Query: 195 FDVDSQRTLEEVE--AINLLPAHEFPTDKAAIELFRSQ----WRDTFEVKRDPEHIYQQV 248 F V QR++ E++ + E + V + ++ Sbjct: 221 FSVADQRSIPEIDIHTLVAFACRELLLSEDVRARAAQLAARHPAAESTVTGSASDMLAKL 280 Query: 249 SKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV---------NTGDLETSAERFQADT 299 ++G G+E P+ +S+ L P T ++ DL + F + Sbjct: 281 AEGIAVDGMEAVLPVLWSDGHALLTDQLPDGTPVLVCDPEKVRTRAADLIRTGREFLEAS 340 Query: 300 LARFENRGVDPMRPLLPPQ---SLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQ 356 + + P+ Q S ++ +D++ + L + + L + Sbjct: 341 WSVAALGTAENQAPVDVEQLGGSGFVELDQVRAAAARTGHPWWTLSQL-SDESAIELDVR 399 Query: 357 KLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD 416 P + + A+ + G G + E L+ + Sbjct: 400 AAPSARGHQRDIDEIFAMLRAHIATGGYAALVAPGTGTAHRVVERLSESDTPAGMLDPGQ 459 Query: 417 EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAE 476 ++ G G + NL +I E+DL G RV+ + +R I + Sbjct: 460 APKPGVVGVLQGPLRDGVIIPGANLVVITETDLTGSRVS--AAEGKRLAAKRRNIVDPLA 517 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA---------NDAKLYVPVSSLH 527 L G VVH +HG+GR+ M GG EYL+L YA N KLYVP+ SL Sbjct: 518 LTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRGGGAKNTDKLYVPMDSLD 577 Query: 528 LISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 587 +SRY GG + L +LGG W+ + KA VR++A EL+ +YA+R A G AF D Sbjct: 578 QLSRYVGG--QAPALSRLGGSDWANTKTKARRAVREIAGELVSLYAKRQASPGHAFSPDT 635 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 D+F F T DQ AI V +DM +P+ MDR++CGDVG+GKTE+A+RAAF AV Sbjct: 636 PWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQ 695 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 + KQVAVLVPTTLLA QH F +R + +PV I+ +SRF A E ++ +A+G +DI+ Sbjct: 696 DGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAAESRAVIDGLADGSVDIV 755 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 IGTH+LLQ+ V++KDLGL++VDEE RFGV HKE IK++R +VD+LT++ATPIPRTL M++ Sbjct: 756 IGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVDVLTMSATPIPRTLEMSL 815 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 +G+R++S I TPP R V T+V +D + A+ RE+LR GQ +Y++N V +I AA Sbjct: 816 AGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDGQAFYVHNRVSSIDAAAA 875 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 R+ ELVPEAR+ + HGQM E LE + F ++ ++LVCTTI+ETG+DI ANT+I+ER Sbjct: 876 RVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTIVETGLDISNANTLIVER 935 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 AD FGL+QLHQLRGRVGRS + YA+ L P +T A RL IA +LGAG A+A Sbjct: 936 ADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRLATIAQNNELGAGMAVAL 995 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLE------DLTSQQ 1001 DLEIRGAG +LG EQSG + +GF LY+ L+ A++ + + + + Sbjct: 996 KDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAYRAAADGQTVRTAEEPKD 1055 Query: 1002 TEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLL 1061 ++L + + LP D+I RL Y+R+A+A ++ E+ + EL DR+G LP+PAR L Sbjct: 1056 VRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVDELTDRYGALPEPARRLA 1115 Query: 1062 DIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQ-HYR 1112 +ARLR + GI + + + + A + L + P HYR Sbjct: 1116 AVARLRLLCRGSGITDVTAAS-AATVRLSPLTLPDSAQV-RLKRMYPGAHYR 1165 >UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSM6_9FIRM Length = 1157 Score = 1025 bits (2650), Expect = 0.0, Method: Composition-based stats. Identities = 353/1143 (30%), Positives = 604/1143 (52%), Gaps = 31/1143 (2%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 + T C + + +++IA + +A + ++++ + V+ + + Y Sbjct: 30 VYGTTEGFCGIFSYALFRKLNKKLLIIAENRLSARKYYEDLFNISPLRVLLYPEKDIFLY 89 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 D S +D + +RL T+ ++ T +++ + L ++ + L ++K + + Sbjct: 90 DRDSKSRDNLKTRLGTISKILTDDWDIIVTTLRALGDKISARDVFLKNTLTLEKSKDIDI 149 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 +L +L GY QV G+++ RG ++D+ YR++ FD EIDS+R F+++ Sbjct: 150 KSLNAKLLQMGYERYPQVEGMGQFSIRGNIIDIATFSDN--YRIELFDTEIDSIRTFELE 207 Query: 199 SQRTLEEVEAINLLPAHEFPTDKA----AIELFRSQWRDTFEVKRDPEHIYQQVS----- 249 SQR+++ ++++ + P + + A + ++ T + ++++ S Sbjct: 208 SQRSIDFIDSVKIFPTLDILISEDDRLNAAKKIENEINKTKLSGERKDRLFEKFSLYKNR 267 Query: 250 --KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL-LVNTGDLETSAERFQADTLARFENR 306 + + P + L + + +T+ ++N E + Sbjct: 268 LVEDEYIQNPDLIIPFLNEDKLSGIIDFIGEDTISILNEPKQILEREETLELENSETITE 327 Query: 307 GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN--LGFQKLPDLAVQ 364 + L ++++ + +L+ + L K + F+ + Sbjct: 328 MITFGEALPSHKNIYYPYLNIIDKLRKRNLLTLNALLTSPKEFRPKAIVNFKMKSITNYR 387 Query: 365 AQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY 424 ++ K + L +L V+ S R + L L + + + Sbjct: 388 SKIKLFREDLDYYLSN-GYKVILLGGSLKRAKRLHNFLLEFNLNVEFKEDRNTEFANNFV 446 Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 + G+ G + + +I +++ G ++ ++ I N +LH+G VV Sbjct: 447 VTTGSVNAGCEFALSKIVIINYAEIYGT-----YKEKKKPKRKKEKILNFEDLHVGDYVV 501 Query: 485 HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544 H HG+G+Y G LE GI +Y+++ Y D KL++P+ SL LI +Y G ++ L+K Sbjct: 502 HESHGIGKYIGTEQLEVSGIKRDYVVIKYFGDDKLFLPIESLDLIYKYTGDEKKAPKLNK 561 Query: 545 LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604 L W++ ++KA + + D+A +L+ +YA R +K GF F D + F D+F +E T Sbjct: 562 LNSIEWNKTKRKAKKSIDDMADDLIKLYAARESKNGFKFSKDSSFQREFEDAFIYEETDG 621 Query: 605 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 664 Q + + DM + MDRL+C DVG+GKTEVA+RAAF A+ + KQVA LVPTT+LAQQ Sbjct: 622 QLLSSEEIKKDMEEAHPMDRLLCADVGYGKTEVALRAAFKAILDGKQVAFLVPTTILAQQ 681 Query: 665 HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 724 HY+ +RF ++PV + ++SRFR+ KEQ + + ++ G +DI++GTH+LL DV FKDLG Sbjct: 682 HYNIMVERFKDFPVEVGILSRFRTKKEQKETIEKLKAGIVDIVVGTHRLLSKDVVFKDLG 741 Query: 725 LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784 LLI+DEE RFGVRHKE++K ++ N+D LTL+ATPIPRTL M+M G+RD+S+I PP R Sbjct: 742 LLIIDEEQRFGVRHKEKLKMLKENIDTLTLSATPIPRTLQMSMIGIRDMSVIEEPPEERF 801 Query: 785 AVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 844 VKT+V EY+ ++VREAILRE+ RGGQVY++YN V N++ + L ELVPE + +GQ Sbjct: 802 PVKTYVLEYNPLMVREAILREVERGGQVYFVYNRVANMEYKLQELRELVPEVSFVMANGQ 861 Query: 845 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 M E++LE M F +VL+C+TIIETG+D+ ANT+II ++ GL+QL+QLRGR+G Sbjct: 862 MNEKDLEDTMLSFLRGDVDVLLCSTIIETGMDVQNANTMIITDSNRLGLSQLYQLRGRIG 921 Query: 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 964 RS AYA+ +++ AQKRL+ I + G+GF +A DLEIRG+G +LG +Q Sbjct: 922 RSSRVAYAYFTYEKDVSISEIAQKRLKTIKEFTEFGSGFKIALRDLEIRGSGSILGSKQH 981 Query: 965 GSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRL 1024 G ++ IG+ LYM+ L AV+ LK +E + +T ++L++ S +P +I D RL Sbjct: 982 GHIDNIGYDLYMKYLTQAVNKLKG-----IETRETIETVIDLKIDSYIPKTYIEDERLRL 1036 Query: 1025 SFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKG 1084 YK+I+ ++E E ++ ELIDRF LP L+DI+ LR +A K+ + + + Sbjct: 1037 EIYKKISVLESEKEYSDLIDELIDRFSDLPKEVVNLMDISLLRYKASKINVISIIEKDGK 1096 Query: 1085 GVIEFAEKNHVNPAWLIGLLQKQPQHYRLD-GPTRLKFIQDLSERKTRIEWVRQFMRELE 1143 I+ E+ +N LI + + ++ D ++ L ++ + + Sbjct: 1097 YTIKLNEEIGLN---LIKEMGENFKYISYDLSEHSEIILEKLKYPMEDLKKALVIISSQK 1153 Query: 1144 ENA 1146 + Sbjct: 1154 NHN 1156 >UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Oribacterium sinus F0268 RepID=C2KYF4_9FIRM Length = 1138 Score = 1023 bits (2646), Expect = 0.0, Method: Composition-based stats. Identities = 385/1162 (33%), Positives = 611/1162 (52%), Gaps = 77/1162 (6%) Query: 4 QYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT 63 + T ++ E + ++ + + L + ++ + + A + + F Sbjct: 25 FFALTEALEKKEPLFVEGISDSLKSLLALGFRGKW---ILYLCKTEERAKEILQDGKIFA 81 Query: 64 DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFL 123 + + + L Y + + I R L QL + G+L+ + +++++ + Sbjct: 82 -ENCLLFPAKDYLFYKADTRGNYISRERSECLRQLVEEEEGMLVTTLPAMLEKLEGKNAF 140 Query: 124 HGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLD 183 ++ GQ LS ++L+ L S GY+ VDQV GEY+ RG +LD+F E P R++ Sbjct: 141 RQAVFTVQLGQTLSLESLQDSLHSLGYQRVDQVESRGEYSLRGGILDVFSNQMEEPLRIE 200 Query: 184 FFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEH 243 FFDDE+DSLR F +LE ++ + + + Sbjct: 201 FFDDEVDSLRYF------SLESQRSLEQV---------------------------EEAN 227 Query: 244 IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQADTLA 301 IY VS+ P+ ++ + L Y P + L++ + +R + + +A Sbjct: 228 IYP-VSEQGKPSSLKAF----------SLLDYLPKDCLVIVDEPVRVLEEGKRVEEEFIA 276 Query: 302 RFENRGVDPMRPLLPPQSL-WLRVDELFSELKNWPRVQLKT--------EHLPTKAANAN 352 F R + L V L E + P + E + + Sbjct: 277 YFSQRAEAEANQEKDQRPLDLFSVRTLMEECASRPIFFFSSLGGISEWGEVFENPLKSIS 336 Query: 353 LGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRI 412 + +++P +Q A + + + S+ R L E L + ++ Sbjct: 337 VECREIP---FYGKQFAQFKGDMEKYKKEKVRISLYSPSQSRASRLAEELRKEGLSAYCP 393 Query: 413 MRLDEASDRGRY--------LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRT 464 RL E + G ++ GF L ++ E DL G+ + R++ ++ Sbjct: 394 DRLSEDREEGEDTENAGSIRVLPRYLRKGFYLPKEKLLVMTEQDLYGQSLVGRKRRKKKQ 453 Query: 465 INPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVS 524 + I +L ELH G VVH HG+G Y G+ + G++ +YL + Y + LY+PV+ Sbjct: 454 V-ESLHIGSLTELHKGDYVVHESHGIGIYEGIERIVTDGVSKDYLKILYGDGGNLYLPVN 512 Query: 525 SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 L I +YAG + L++L G W + + K VR++A ELL +YA+R + G+ F Sbjct: 513 KLDGIEKYAGKEAKAPKLNRLNGSEWQKTKSKVKGAVREIAKELLALYAKRQEERGYPFG 572 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 D + F ++FP+E T DQ AI A DM MDRLVCGDVG+GKTE+A+RAAF Sbjct: 573 KDTVWQREFEEAFPYEETGDQLLAIEATKEDMESEKIMDRLVCGDVGYGKTEIALRAAFK 632 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 AV + KQVA L PTT+LAQQ Y+ F +R +PV + ++SRF+S KE + L ++A G+I Sbjct: 633 AVQDSKQVAYLCPTTILAQQIYNGFVERMKGFPVEVGILSRFQSQKEVHKTLEQLASGRI 692 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 DIL+GTH+LL DV FK+LGLL+VDEE RFGV+HKERIK+++ NVD+LTL+ATPIPRTL+ Sbjct: 693 DILVGTHRLLSKDVHFKNLGLLVVDEEQRFGVQHKERIKSLKENVDVLTLSATPIPRTLH 752 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 M++ G+RDLSI+ P RL ++T+V E + +REAI RE+ R GQVYY++N V++I+ Sbjct: 753 MSLVGIRDLSILEEAPMDRLPIQTYVMEEEEGTIREAISRELRRNGQVYYVHNRVKSIED 812 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 A RL +L+PEARIA HGQM E+ELE +M F +VLV TTIIETG+DIP ANT+I Sbjct: 813 TALRLQKLLPEARIAYAHGQMGEKELEEIMLSFIAGEIDVLVSTTIIETGLDIPNANTLI 872 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 I+ AD GL+QL+Q+RGRVGRS+ +YA+LL K++T +++KRL+AI +LG+G Sbjct: 873 IQDADKMGLSQLYQIRGRVGRSNRTSYAFLLYKKGKSLTEESEKRLKAIREFTELGSGIR 932 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 +A DLEIRGAG +LG EQ G ME +G+ LY +LL +AV K ++ + +T++ Sbjct: 933 IALRDLEIRGAGNVLGAEQHGHMEAVGYELYTKLLRHAVLLEKGEKQ----EEEDFETQL 988 Query: 1005 ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA 1064 ++ + + +P+ ++ + +L Y++IA +E E +++ EL DR+G LP L +A Sbjct: 989 DVDLDAFIPESYMENEEQKLEAYQKIALLSSEEEKMDLEDELTDRYGDLPYQVENLFQVA 1048 Query: 1065 RLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD 1124 LR K+G+ + + F K +N + L+ + R K + Sbjct: 1049 SLRNLLHKIGVTECKIKRGEIHFLFFPKAKINTDAIPALISESRGEIRFVNGESPKLLYK 1108 Query: 1125 LSERKT--RIEWVRQFMRELEE 1144 + +I+ + +E+ E Sbjct: 1109 KKNLRDLPKIQESMEKAKEIAE 1130 >UniRef50_B2S2U1 Transcription-repair coupling factor n=4 Tax=Treponema RepID=B2S2U1_TREPS Length = 1140 Score = 1023 bits (2645), Expect = 0.0, Method: Composition-based stats. Identities = 368/1143 (32%), Positives = 571/1143 (49%), Gaps = 48/1143 (4%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 + TG + E +VL+ P Q+ + +++ L W +LPY Sbjct: 27 VEGCTGGLRSYFFGEYVRTCCAHIVLVVPTEQDVAAVCTDLAH-AAVPTRVLPWWGSLPY 85 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQ---RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 SP+ + S R+ L L + L+ V P ++ + G+ Sbjct: 86 RPVSPNAHVFSHRVEALCALAQRDATAPCAFVFTQRALLTPVPPLDYVRTLKRSFRVGEH 145 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPM----GSELPYRLDFFDDEIDS 191 + L QL GY VD V E++ RG +LD+ + YR+ + I+ Sbjct: 146 IEIHTLAAQLMQWGYARVDHVSACAEFSLRGEILDIAAAAQAADNTQAYRIVCDFNTIER 205 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKG 251 + + V + L+EV A L A E + I + E ++++ Sbjct: 206 IHILAVSTCAVLQEVSACTLYAAKEILWSEERIAFLHQNLQKLSECPAHCVPCIEELTHR 265 Query: 252 TLPAGIEYWQPLFFSEPLPPLFSYF-----PANTLLVNTGDLETSAERFQADTLARFENR 306 G E + PL F P + YF P + ++ A Q + + Sbjct: 266 KTYEGEEMFYPLCFERPTC-VLEYFRHSPSPPSVFYLDYERQHNGARALQDECRNLYHKM 324 Query: 307 GVD----PMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLA 362 + P R P+ + L + + T P A ++ P + Sbjct: 325 QLAHEHVPARWYPQPEHIVLDFSAVCAL---HLHTVYFTHFFPQLPACESICLASDPARS 381 Query: 363 VQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG 422 + L + + VF+ ESE + + L+ + Sbjct: 382 FFGNIPYFKEELLRLSKDGWHVFVFA-ESEQQALRIRALVKGCDVT-------------- 426 Query: 423 RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQP 482 ++ A GF + ++ E ++ G R + R P I EL+ G Sbjct: 427 --VLPCALSAGFSIPALKILIVQEGEIFGRRRKTPQSVQRARSTP---IDTFVELNPGDY 481 Query: 483 VVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPL 542 VVH ++G+G + G+ ++ +Y+ L YA + + +P+ HL+ RY G L Sbjct: 482 VVHAQYGIGLFKGIERIKTAQSERDYVNLLYAQEETILIPIEQAHLVQRYIGNEGNKPHL 541 Query: 543 HKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETT 602 LG +W + + + V ++A +L+++Y+ R G AF D E F +FP+E T Sbjct: 542 DSLGSKSWETRKARVKKSVENIAQKLVELYSLRKTTRGHAFPKDDEWQYAFEAAFPYEET 601 Query: 603 PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLA 662 DQ I V DM + + MDRLVCGDVG+GKTE+AMRAAF AV KQV L PTTLL Sbjct: 602 DDQRICIEEVKQDMQEAVPMDRLVCGDVGYGKTEIAMRAAFKAVMGGKQVVFLTPTTLLV 661 Query: 663 QQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 722 +QH+ +RF ++PVRIE +SRF EQ ILA++A G ID+++GTH+L+Q DV FKD Sbjct: 662 EQHFRTICNRFKHFPVRIEKLSRFVPKSEQKDILAKLAHGDIDLIVGTHRLIQKDVSFKD 721 Query: 723 LGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR 782 LGL+I+DEE RFGV+ KE++K M+ NVD L+L+ATPIPRTL+M M +RD+S++ TPP Sbjct: 722 LGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHMGMLKIRDMSLLTTPPEG 781 Query: 783 RLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 842 RL ++T ++++D +V AI +E+ R GQ++YL+N +EN++ L +LVPE I + H Sbjct: 782 RLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRIENLESVKCMLQKLVPELSICVAH 841 Query: 843 GQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGR 902 M ELE + F+ + F +L+ TTIIE GID+P ANTIII+RAD +G++QL+QLRGR Sbjct: 842 SLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIIIDRADMYGVSQLYQLRGR 901 Query: 903 VGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEE 962 VGRS +AYA+LL H A++ A KRL+ I+ DLGAGF +A D+EIRG G LLG+E Sbjct: 902 VGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKVALKDMEIRGVGNLLGKE 961 Query: 963 QSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNT 1022 QSG + ++GF LY++LLE A++ L+ + +T ++L +P +I Sbjct: 962 QSGDIYSVGFDLYVQLLEEAIERLQHA-----PNEQRIETVIDLNYRGFIPHTYIAADEI 1016 Query: 1023 RLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNE 1082 ++ YK+IA+A T ELE I+ E I RFG +P+ A L +A ++ + +KL I L+ Sbjct: 1017 KMELYKKIAAAHTHEELERIRTETITRFGPIPEEAAGLFTVAEIKVRCEKLAILSLKETH 1076 Query: 1083 KGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDG--PTRLKFIQDLSERKTRIEWVRQFMR 1140 + +IEF + ++ L+Q RLD P L D E K + ++ + ++ Sbjct: 1077 ESLLIEFDKVCDTAFKKILRLVQTSNDRVRLDAKQPNMLILTSDAIEIKEKGIFICEILK 1136 Query: 1141 ELE 1143 LE Sbjct: 1137 RLE 1139 >UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cyanobacteria RepID=MFD_SYNY3 Length = 1199 Score = 1020 bits (2638), Expect = 0.0, Method: Composition-based stats. Identities = 391/1114 (35%), Positives = 598/1114 (53%), Gaps = 51/1114 (4%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 L L +V+ +A+ +++I ++ A R ++ Q V E PY Sbjct: 68 LSGLPRLPKGLIVSSLAQSLEKNLLVITATLEEAGRWTAQLELMGWQTVNFYPTSEASPY 127 Query: 79 DSFSPHQDIISSRLSTLYQLPTM---QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 D +++ ++ L +L + ++ L + P + L + L +++GQ Sbjct: 128 DPGRLESEMVWGQMQVLAELIQGHQVKGKAIVATEKALQPHLPPVATLREYCLALRRGQE 187 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 + +L L GY V G+++ RG ++D+FP+ +ELP RL++F DE++ +R F Sbjct: 188 MDSKSLELTLARLGYERGSTVETEGQWSRRGDIVDIFPVSAELPVRLEWFGDELEKIREF 247 Query: 196 DVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPA 255 D SQR+L+++ + L P D+ +Q D D E + Sbjct: 248 DPASQRSLDDLTGLVLTPTS---FDQVIEPALNAQAIDLSAWGEDAET-----EQLFGKE 299 Query: 256 GIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQADTLARFENRGVDPMRP 313 G++ + L F+EP L Y P T+ V +ER+ + + P Sbjct: 300 GLQRFLGLAFTEP-ACLLDYLPTETVCVLDEPEQCAAHSERWFEAVAQDWSALQL----P 354 Query: 314 LLPPQSLWLRVDELFSELKN-WPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLD 372 LP L L LK + + L H +A +L P + Q + Sbjct: 355 NLP--QLHRNFSALGDRLKTDFQYITLSEIH---EANGDSLDISARPIPTMPHQFAKLAE 409 Query: 373 ALRKFLETFDGPVVFSVESE---GRREALGELLARIKIAPQRIMRLDEAS--------DR 421 LR E + G + + + LL A Q I + Sbjct: 410 ILRGKREIYSGLTLGQYSTWLISAQPSRTVSLLQEHDCAVQFIANPRDYPAIEKSQIQRT 469 Query: 422 GRYLMIGAAEH--GFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHI 479 L GF+ L L+ + +L G+ + R+ + ++ +L Sbjct: 470 AVTLKYSGLAELEGFILPTFRLVLVTDRELFGQHALATPEYVRKRRRATSKQVDINKLSP 529 Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G VVH HG+G++ + L EYLM+ YA+ L VP SL +SR+ Sbjct: 530 GDYVVHKSHGIGKFLKLDAL----ANREYLMIQYADG-ILRVPADSLDSLSRFRHTGTRP 584 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599 LHK+GG W + K + V+ +A +LL++YA+RA + G+A+ D Q DSFP+ Sbjct: 585 PELHKMGGKVWEATKNKVRKAVKKLAVDLLNLYAKRAKQVGYAYPPDSPWQQELEDSFPY 644 Query: 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-KQVAVLVPT 658 + TPDQ +A+ V D+ MDRLVCGDVGFGKTEVA+RA F AV + KQVA+L PT Sbjct: 645 QPTPDQLKAVQDVKRDLEGDRPMDRLVCGDVGFGKTEVAVRAIFKAVTSGNKQVALLAPT 704 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 T+L QQHY ++RFA +P+ I +++RFR+A E+ +ILA++ G++DI++GT ++L + V Sbjct: 705 TVLTQQHYHTLKERFAPYPITIGLLNRFRTASEKKEILAKLKSGELDIVVGTQQVLGTSV 764 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 KFKDLGLL++DEE RFGV KE+IK ++ VD+LTLTATPIPRTL M++SG+R++S+I T Sbjct: 765 KFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIPRTLYMSLSGIREMSLITT 824 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 PP R +KT + Y+ V+R AI E+ RGGQV+Y+ +E I++ +L ++VP ARI Sbjct: 825 PPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIEGIEELGGQLRQMVPSARI 884 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 AIGHGQM E ELE M F+ ++LVCTTIIE G+DIP NTII+E A FGLAQL+Q Sbjct: 885 AIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRVNTIIVEDAQKFGLAQLYQ 944 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 LRGRVGRS QA+AWLL P+ K +T A+ RL A+ LG+G+ LAT D+EIRG G L Sbjct: 945 LRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLGSGYQLATRDMEIRGVGNL 1004 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIP 1018 LG EQSG ME IG+ YME+L++A+ ++ P +ED T+++L + + +P D+IP Sbjct: 1005 LGAEQSGQMEAIGYEFYMEMLQDAIKEIQGQEIPKVED-----TQIDLPLTAFIPSDYIP 1059 Query: 1019 DVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 D+ +++ Y+RI S ++ +EL +I ++ DR+G+LP P L + +L+ A+ LG ++ Sbjct: 1060 DLEEKMAAYRRITSIESTDELPKIALDWGDRYGMLPSPVEELFKVVKLKHLAKSLGFSRI 1119 Query: 1079 EGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYR 1112 + K ++ E PAW + L + P H + Sbjct: 1120 KVEGKQNLV--LETPMEEPAWKL-LAENLPNHLQ 1150 >UniRef50_A6CB65 Transcription-repair coupling factor n=2 Tax=Planctomyces RepID=A6CB65_9PLAN Length = 1112 Score = 1016 bits (2627), Expect = 0.0, Method: Composition-based stats. Identities = 388/1146 (33%), Positives = 605/1146 (52%), Gaps = 80/1146 (6%) Query: 8 TLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMV 67 T +++G+ + G +CA A IA ++++ P + +++ F + Sbjct: 29 TAALRSGQSGTIDGAWGGSCALAAASIATALDSVLLIVLPRLSEIDEFTGDLASFLGTIP 88 Query: 68 MNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ-----RGVLIVPVNTLMQRVCPHSF 122 WETLP D + RL L +L V++ L+Q V Sbjct: 89 EIFPAWETLP-DEHDVADTVFGGRLRVLSRLQHSGGNESTPQVIVTSFPALLQPVPSRKQ 147 Query: 123 LHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRL 182 ++ G + DA L G+ + GE++ G +LDL+ S LP R+ Sbjct: 148 REAATRRIQVGDEIDTDAFMKWLLERGFERTTAIQLPGEFSMHGGILDLYSPDSALPIRI 207 Query: 183 DFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPE 242 +FF DE++S+R FDV++QRTLE + ++L P + +L + Sbjct: 208 EFFGDEVESIRQFDVETQRTLETCQQVDLTLISPVPASVSGRQLQTPNRDEDGTTS---- 263 Query: 243 HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT--LLVNTGDLETSAERFQADTL 300 L P L+ +L +R+ L Sbjct: 264 ---------------------------ESLLDNLPPEACIALIELPELIDEGKRY----L 292 Query: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 360 R EN P+ L+ V + ++P V + + + +L + + Sbjct: 293 DRLEN-----------PRGLF-SVPATMARCTDFPSVTIAPISAESTEISCHLQIESVER 340 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 Q L+ L + D V+ ++G ++ L ELL ++ ++ Sbjct: 341 FTRSKSQM--LEELASIIGPQD-TVLVCCHNQGEQDRLQELLDESELDLSERVK------ 391 Query: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 IG GF +L ++ + +L G R + R+ I + +L++G Sbjct: 392 ----TCIGNLALGFRIVPEHLVVLSDHELFGRADIRHKPRKRKV--ESRAIDSFLDLNVG 445 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 VVHL HG+ R+ G+ LE G E+L L + + ++YVPVS +HL+ +Y GG + Sbjct: 446 DFVVHLSHGIARFRGLELLEKEGYREEHLSLEFRDKVQMYVPVSLVHLVQKYIGGGKHVP 505 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 L KLG +W+ ++KAAE VRD+A+++L + AQR+ + G ++ D + F SFP+ Sbjct: 506 RLSKLGTKSWASKKEKAAEAVRDMASDMLRLQAQRSGQPGISYPPDSHWQKEFEASFPYT 565 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 T DQ AI+ V DM + MDRL+CGDVG+GKTEVA+RAAF A+D KQVAVLVPTT+ Sbjct: 566 ETSDQLHAISDVRHDMERAQPMDRLICGDVGYGKTEVAIRAAFKAIDAGKQVAVLVPTTV 625 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LA+QH F +R A++P+ IE +SRF+S KEQ IL +A G +D++IGTH+L+Q D+KF Sbjct: 626 LAEQHTRTFSERMADYPITIEGLSRFKSKKEQRAILEGMAAGSVDLVIGTHRLIQKDIKF 685 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 KDLGLLI+DEE RFGV KE +K +R +D+LTL+ATP+PRTL+M++ G+RD+S + T P Sbjct: 686 KDLGLLIIDEEQRFGVEAKEMLKRLRLQIDVLTLSATPVPRTLHMSLLGIRDISNLTTAP 745 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 R+ ++T + +D ++R A++RE+ R GQVY+++N V ++QK A+R+ ++VPEA I I Sbjct: 746 RDRVPIETRITRFDPELIRHAMVRELNRNGQVYFVHNRVHDLQKYADRIQQIVPEASIGI 805 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 GHGQM+E ELE M +F + ++ VCTTIIE+G+DIP ANTI I A + GL+ LHQLR Sbjct: 806 GHGQMKETELEAAMLNFVSGKVDIFVCTTIIESGLDIPNANTIFIHDAGNHGLSDLHQLR 865 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGRSHH+AY +LL + +T A KRL+AI +LGAGF +A DLEIRGAG +LG Sbjct: 866 GRVGRSHHRAYCYLLLRDGQMLTPIAAKRLKAIEEYSELGAGFKIAMRDLEIRGAGNILG 925 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 EQSG + +G+ LY +LLENA LK EP E ++L + LP D+IP Sbjct: 926 TEQSGHIAAVGYELYCQLLENACRKLKN--EPIREH---HHVAIDLPCTAYLPSDYIPPG 980 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 ++ Y+++++ ++ EL ++ E+ DRFG +P PAR LL + L+ +Q+ + + Sbjct: 981 RIKIELYRKLSAVRSLEELNALEEEMEDRFGPIPHPARQLLILKELQILSQRWQVDSIRL 1040 Query: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1140 V+ + +KNH ++ L + + + L +E V Q ++ Sbjct: 1041 ENNFAVLGYRDKNH-----ILALSKSNQDRIPVRIVDQKSAYIPLPISAENLEEVMQELK 1095 Query: 1141 ELEENA 1146 + + + Sbjct: 1096 TVLQQS 1101 >UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RAG4_9FIRM Length = 1143 Score = 1014 bits (2622), Expect = 0.0, Method: Composition-based stats. Identities = 347/1141 (30%), Positives = 595/1141 (52%), Gaps = 35/1141 (3%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 LG L+ + A +VA ++ ++++ + A RL++ + + V+ E+L Sbjct: 24 LGNLSLSEEALIVASAFQKQPQTMLIVKNNTYTAQRLYERLYSLLGEKVLFFGVEESLRV 83 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 ++ + + ++++ L +L + ++++ + + H + +K + + Sbjct: 84 EAIAASPETKANQMEVLSKLFDNKPYIVVMNAAASIHYLPAPEVFQQHCISIKTNEETNY 143 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 + L+T L AGY HV +V + YA RG ++D++ M E P R++FFD+EIDS+R FD+ Sbjct: 144 EQLKTLLFEAGYTHVSRVDQPLCYAARGGIIDVYSMNYEYPLRIEFFDNEIDSIRFFDIS 203 Query: 199 SQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF------------EVKRDPEHIYQ 246 +QRT+E ++ +++PA + I+ ++ Sbjct: 204 TQRTIEVIQEASIIPASDILFTNEEIQTITQLALAELANVKGFTNASKEHLEAIVNEDLD 263 Query: 247 QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENR 306 ++ + A + ++ F + Y ++V++ + + + A+ + Sbjct: 264 AIANHSPEARLYKYRA--FLNQQATIMDYVKNACVIVSSEEEVKDSIKHAAEENIAYIQE 321 Query: 307 GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQ 366 LL + + ++ + +K + ++ + D+ ++ Sbjct: 322 MYQEANGLLK----FSMFADFSKAIQAHDVIYVKMFVDYKQPLSSQIMTMAQGDINLERT 377 Query: 367 QKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLM 426 + ++ V+ ++ E + + ELL ++ QR+ D G ++ Sbjct: 378 MDQLIT------QSHSDKVLLCLD-ESEIKRVRELLDEKNVSYQRVEETDT-LKNGISIL 429 Query: 427 IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 GF + + +L + + R ++ ++ + EL++G VVH Sbjct: 430 HHRLIEGFTCISEQIHVYTGKELFQSKHSISRYSNK--FKEAEVLHDYQELNVGDYVVHH 487 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLG 546 +HG+G+Y G+ E GI ++L + Y D L VP+ LI ++ L+KLG Sbjct: 488 QHGIGKYLGIVNKEIDGIHKDFLHIAYKGDDVLLVPLEQFQLIRKFVSKEGAVPKLNKLG 547 Query: 547 GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606 W + ++K +EK+ +A L+ +YA R GFAF D E + F F +E T DQA Sbjct: 548 SGEWEKTKRKVSEKIAQLAQRLVHLYASREEHIGFAFSKDSELQKQFEQDFDYELTHDQA 607 Query: 607 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 666 +A+ + DM MDRL+CGDVGFGKTEVA RAAF AV ++KQVA L PTT+L+ QHY Sbjct: 608 RAVKEIKQDMESSKPMDRLLCGDVGFGKTEVAARAAFKAVVDNKQVAFLCPTTILSLQHY 667 Query: 667 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 F RF N+PVRIE+I+RF +Q QI+ ++ G IDILIGTH+LL D++F+DLGLL Sbjct: 668 KTFTRRFENYPVRIEVINRFIPMAKQKQIMEDIKAGSIDILIGTHRLLSKDIQFQDLGLL 727 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 ++DEE RFGV HKE+IK + VD+L+L+ATPIPRTL M++ G+R LS + TPP R+ V Sbjct: 728 VIDEEQRFGVEHKEKIKEFKNTVDVLSLSATPIPRTLQMSLIGIRSLSQLNTPPQNRMPV 787 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 +T+V E + +++E I RE+ R GQV+YLYN+V+ I A +L E +P+ I + HGQM Sbjct: 788 QTYVIEKNFAMIKEIIQRELARNGQVFYLYNNVKEIYNVARKLREALPDVEIGVAHGQMS 847 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 ++E VM F + VLVCTTIIETGIDIP ANTI+I+ ADHFGLAQL+Q++GRVGRS Sbjct: 848 REDIEDVMLQFTENHYQVLVCTTIIETGIDIPNANTILIDEADHFGLAQLYQIKGRVGRS 907 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 AYA+L+ + ++ A KRL++I LG+G+ +A DL IRGAG++LG +Q+G Sbjct: 908 DRLAYAYLMYSPQRQLSEIAMKRLKSIKEFTQLGSGYKIAMRDLTIRGAGDMLGPQQAGF 967 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026 ++T+G +Y+E+L +A+ K ++ ++L +V+ + +P F + +++ Sbjct: 968 IDTVGIDMYIEMLNDAIMEEKGIKKEVKKELAKANVKVD----AYIPSRFANEDYEKITL 1023 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGV 1086 Y+R+ + T+ EL + E+ D +G LP + L + RL + + + + Sbjct: 1024 YQRMDAITTKKELLAMMDEIKDNYGRLPKAVQLLFEKKRLDICINEPHVETFKEMPREVE 1083 Query: 1087 IEFAE--KNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 I F N ++ L ++ + + + K + + K + V + + E+ Sbjct: 1084 IVFTPQWSNGIDGVKLFEMMTTISKDIVIRYKDQ-KIYMRMPKIKDWLYVVIEILERSEQ 1142 Query: 1145 N 1145 Sbjct: 1143 M 1143 >UniRef50_C6A8D1 Transcription-repair coupling factor n=17 Tax=Actinobacteridae RepID=C6A8D1_BIFLB Length = 1194 Score = 1013 bits (2620), Expect = 0.0, Method: Composition-based stats. Identities = 410/1129 (36%), Positives = 616/1129 (54%), Gaps = 73/1129 (6%) Query: 10 PVKAGEQRLLGELTGAA---CATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-- 64 V AGE L GA L A A+R PVV++ P + A L ++ + D Sbjct: 47 HVDAGEDADPSILVGAPNGIRPALAAASADR--KPVVIVVPSGREAEDLVGDLRSWYDGD 104 Query: 65 -QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG--------VLIVPVNTLMQ 115 V L WETLP++ SP D +++R+ T Y+L Q +L++PV +L+Q Sbjct: 105 PNEVAQLMAWETLPHERLSPRADTVANRMETFYRLCHPQSDSEMFGPIRILVMPVRSLIQ 164 Query: 116 RVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175 V LV +G+ ++ + L Y VD VM+ GE+A RG ++D+F Sbjct: 165 PVVA-GIGDVKPLVFAQGEEITLEDAVQGLVRNSYTRVDLVMDRGEFAVRGGIIDVFVPT 223 Query: 176 SELPYRLDFFDDEIDSLRVFDVDSQRTL-EEVEAINLLPAHEFPTDKAAIELFRSQWRDT 234 P R++FF DEID++R F QRT E + ++ P E E R + + Sbjct: 224 EPHPVRIEFFGDEIDTIRRFHSSDQRTYGEPIRSVWATPCRELQLT----EGIRERAQSL 279 Query: 235 FEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN---------T 285 + + + + ++ G+E P + L P+ S P + +++ Sbjct: 280 IGQIPNADDLLESIANAIPQEGMESLIPALVDD-LEPVSSMLPRDCIVMLFDPERLRRAV 338 Query: 286 GDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELK-NWPRVQLKTEHL 344 DL +A F A T G P+ + +L +DE+ +L + + + Sbjct: 339 DDLMKTANEFLA-TSWHVAASGHGAGAPISFEAANFLDLDEVVGQLTYSNHELWKVSGFT 397 Query: 345 PTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLAR 404 ++ ++ + + + D L + + D VV + ++G L +L Sbjct: 398 VDQSLPGHVQIDAVAPQDLHGSGEKAEDHLGELIRK-DYAVVITAAAQGTLSRLKRMLNE 456 Query: 405 IKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRT 464 I + +R A+ GF+D AL+ E DL G + R Sbjct: 457 IGVVHFDTIR-------------SQAQDGFIDHASKTALLTERDLTGRTSVAAGVKTARK 503 Query: 465 INPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGI----TGEYLMLTYAND---- 516 +L EL G VVH +HG+GR+ M G T EYL++ YA Sbjct: 504 RRKSI---DLMELKPGDFVVHEQHGIGRFIEMRQRTTGSGKNQATREYLVIEYAPSKRNA 560 Query: 517 --AKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQ 574 KL++P L +S+Y G E L+KLGG W++ + KA + V ++A L+ +Y+ Sbjct: 561 PPDKLFIPTDQLDQVSKYIGA--EIPKLNKLGGSDWAQTKAKAKKHVHEIAQNLIRLYSA 618 Query: 575 RAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGK 634 R +GFAF D + D+FP++ T DQ I+ V +DM +P+ MDRL+CGDVGFGK Sbjct: 619 RQRAKGFAFSKDTPWQKELEDAFPYQETADQLTTIDDVKADMEKPIPMDRLICGDVGFGK 678 Query: 635 TEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQ 694 TE+A+RAAF AV + KQVAVLVPTTLL QQH F +RF +PV + +SRF+S KE + Sbjct: 679 TEIAIRAAFKAVQDSKQVAVLVPTTLLVQQHLQTFTERFEGFPVNVRAMSRFQSTKEINE 738 Query: 695 ILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTL 754 + +A+G +D++IGTHKLL +KFKDLGL+I+DEE RFGV KE +KA+R NVD+L+L Sbjct: 739 TIKGLADGTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEAKETLKAVRTNVDVLSL 798 Query: 755 TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYY 814 +ATPIPRTL MA++G+R++S +ATPP RL V T+V Y+ V AI RE+LRGGQV+Y Sbjct: 799 SATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAIRRELLRGGQVFY 858 Query: 815 LYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874 ++N VE I++ A+RL +LVPEARI I HG+M ++L++++ DF H+ +VL+CTTI+ETG Sbjct: 859 IHNRVEGIEEKAKRLQDLVPEARIGIAHGKMGRKQLDQIIRDFWHRDIDVLLCTTIVETG 918 Query: 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIA 934 +DI ANT+I++RAD FGL+QLHQLRGRVGR +AYA+ L K MT + +RL IA Sbjct: 919 LDISNANTLIVDRADRFGLSQLHQLRGRVGRGRDRAYAYFLYDPSKPMTEQSHERLVTIA 978 Query: 935 SLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSL 994 LG+GF +A DLE+RG G LLG+EQSG +E +GF LY+ ++ A++ K Sbjct: 979 QNTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAIEDYK-----DP 1033 Query: 995 EDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLP 1054 E ++L + + +P D+I RL Y+++A A++E +L E++ EL DR+G P Sbjct: 1034 ERTEPVAVTIDLPIEASIPVDYIGSDKLRLEVYRKLAGARSEKDLNELRDELTDRYGKPP 1093 Query: 1055 DPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGL 1103 +L D+ARLR++A+ LGI ++ G + I ++PA + L Sbjct: 1094 KVFESLFDVARLREKARALGISEIIGQGRKLRIS-----KIDPAESVQL 1137 >UniRef50_C9KMW0 Transcription-repair coupling factor n=3 Tax=Veillonellaceae RepID=C9KMW0_9FIRM Length = 1129 Score = 1013 bits (2619), Expect = 0.0, Method: Composition-based stats. Identities = 376/1131 (33%), Positives = 590/1131 (52%), Gaps = 72/1131 (6%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADW 73 + L+ L G+ VA + ++ ++ +++S + ++ L + Sbjct: 26 RESLIYGLGGSQKHAAVAACYAALPQMMAILCHSAESLADWKEDLSLLLPEVPIVELPEV 85 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKG 133 +T + + Q+ + R+ L +L + +++ +Q+ + +L ++ G Sbjct: 86 DTFDVKAAAKSQERAARRMEVLGRLVRGEHIIVLARTEAAVQKGMGRNEFKRLSLTLRMG 145 Query: 134 QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193 + L R+ L +L GY H ++V G+++ RG ++D+F + + +P R+++FDDEIDSL Sbjct: 146 EVLPREELLERLVDLGYEHAEEVERVGQFSVRGGIVDIFAINAAVPVRVEYFDDEIDSL- 204 Query: 194 VFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTL 253 EF D R T V Q Sbjct: 205 ---------------------REFDLDTK---------RSTKNVGAATIMPLAQTDASGK 234 Query: 254 PAGIEYWQPLFFSEPLPPLFSYFP-ANTLLVNTGDLETSAERFQADTLARFENRGVDPMR 312 P SY T+L + DT+ D Sbjct: 235 PE---------------LFLSYLEGKGTVLFDEPTRIR-------DTIRTMVKENPDIKG 272 Query: 313 PLLPPQSLWLRVDELFSELKNWPRVQ--LKTEHLPTKAANANLGFQKLPDLAVQAQQKAP 370 + +EL V L + +P A N+G + Q Sbjct: 273 KI-------FSWEELLQAAHGNRIVYMALLLQQVPGADAVENIGVTATTMTPFRRQMDLL 325 Query: 371 LDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAA 430 + ++L V+ + + + +L E A +I + D + G+ Sbjct: 326 ENEANRWLAQ-KQRVLVLLSDKEKANSLREFFAHRRIPSLVENAAEPFRDDAINIRRGSL 384 Query: 431 EHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 GF L ++ E D+ G +R R+ + I + ++ G VVH HG+ Sbjct: 385 LTGFEMASARLVVVTEKDIFGR--HKRHTAVRKHSDYGEKISHFRDIKPGDYVVHESHGI 442 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW 550 G+Y G+ TL+ GGI +YL + YA D KL+VP + L+ +Y G + LH++GG W Sbjct: 443 GKYLGVETLDVGGIHKDYLHIQYAGDDKLFVPTDQVGLLQKYIGSEGDVPRLHRMGGTEW 502 Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 +A+ +A + V D+A +L++IYA+R +G AF D + F D+FP+E T DQ +AI Sbjct: 503 VKAKARAKKSVEDIAQKLIEIYAKRKDAKGHAFPPDDASQREFEDAFPYEETEDQLRAIA 562 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 + +DM + MDRL+CGDVGFGKTEVA+RAA+ A + KQVAVLVPTT+LAQQHY F Sbjct: 563 EIKADMEREKPMDRLLCGDVGFGKTEVAIRAAYKAAMDGKQVAVLVPTTVLAQQHYQTFT 622 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-QSDVKFKDLGLLIVD 729 RF + I++I RFR+ K+Q + + +V G++DILIGTH +L Q+ VK+KDLGLLIVD Sbjct: 623 TRFNGFAPVIDVICRFRTPKQQKETIEKVRLGQVDILIGTHAILNQNKVKWKDLGLLIVD 682 Query: 730 EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF 789 EE RFGV+ K++I+ + A +D+LTL+ATPIPRTL+M++ G RD+SII TPPA R V+T+ Sbjct: 683 EEQRFGVKQKDKIRKLAAGIDVLTLSATPIPRTLHMSLVGARDMSIIETPPAERFPVQTY 742 Query: 790 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERE 849 V E + ++ AI RE+ RGGQVY++YN V+ I + + + LVPEARI HGQM E Sbjct: 743 VVENNDTIIANAIRREMKRGGQVYFIYNRVDTIDRMRDHIESLVPEARIQTAHGQMPEEM 802 Query: 850 LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 909 LE VM DF+ +++L+ T+I+E G+D+ ANTII+ ADHFGL+QL+Q+RGRVGRSHH Sbjct: 803 LEHVMMDFYEGDYDILLATSIVENGLDVANANTIIVYNADHFGLSQLYQMRGRVGRSHHM 862 Query: 910 AYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMET 969 A+A+ + K +T A+KRL+A+ +LGAGF +A DLEIRGAG LLG +Q G + + Sbjct: 863 AFAYFVYQADKILTETAEKRLQAMKEFAELGAGFKIAMRDLEIRGAGNLLGAQQHGHIAS 922 Query: 970 IGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKR 1029 +GF +Y +LLE AV+ L+ G+ P + + ++L+ + + FI D ++ Y+R Sbjct: 923 VGFEMYCKLLEEAVERLQNGKAP---EEAPPEPVIDLQTEAYIDGGFIADAMHKIEIYQR 979 Query: 1030 IASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEF 1089 IA+ ++ E+ + ELIDRFG +P LL++AR++ A+ LGIR ++ I F Sbjct: 980 IAAIRSNEEIRSLLDELIDRFGDPTEPVMHLLEVARIKNYARDLGIRAIKELPLALDIYF 1039 Query: 1090 AEKNHVNPAWLIGLLQKQPQHYRLDGPTR-LKFIQDLSERKTRIEWVRQFM 1139 K + ++ L + R L+F +K +V + + Sbjct: 1040 LPKKRMPAKGMLALANLFGKRMRSLPDKNGLRFTLSDRYKKNITNFVTRLL 1090 >UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Leptospira RepID=Q04S99_LEPBJ Length = 1176 Score = 1012 bits (2618), Expect = 0.0, Method: Composition-based stats. Identities = 375/1136 (33%), Positives = 620/1136 (54%), Gaps = 36/1136 (3%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDE-ISQFTDQMVMNLADWETLP 77 + +T + + L + + ++ +V+++ + A L E +S + ++ L E LP Sbjct: 59 VYSVTEGSHSILASSLFQKLNRTIVVVSENNTAAEFLFREALSFISASDLVYLPGQEVLP 118 Query: 78 YDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLS 137 Y+ ++ R+ + ++ ++ V ++ + P + G A+ ++KG+ + Sbjct: 119 YEYLRYPSEMKRERIKAIGKILNGGPSLIFTSVAGFLKTLPPVQTMQGRAITLEKGKEID 178 Query: 138 RDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDV 197 ++L QL GY+ D GE++ +G +LD++ S+ P R+D F +EI+S+R FD Sbjct: 179 LESLLIQLIDLGYKRTDVCETFGEFSLKGGILDIYSSYSQEPVRIDLFGEEIESIRTFDP 238 Query: 198 DSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGI 257 D+QR++ ++ LLP E+ + +++ + PE + + Sbjct: 239 DTQRSMVDLNRAVLLPVDEYILSDEQKKEYQNILKYYSSSLHIPE-----IPEAGYGIYY 293 Query: 258 EYWQPLFFSEPLPPLFSYF--PANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLL 315 E PL + SYF P L + + + + L+ FE R + + Sbjct: 294 EELVPLVREN--HGILSYFSEPPILLFPSPNSVNQRILHLEREYLSLFEKRSQEVL--CA 349 Query: 316 PPQSLWLRVDEL--FSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDA 373 PP L +E SEL V L P ++ ++ P A + + + + Sbjct: 350 PPDKLLSFGEEFRVLSELVGLSFVGLP----PRNGSDLVSCLKEAP--AFKGKIREVREK 403 Query: 374 LRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEAS------DRGRYLMI 427 + + +V + E + + L L + I + +L++ Sbjct: 404 ISELRAEGGWKIVLTSSFEAQTKRLQGLFEKEGIVLLNEGATEPIPFHLGKHKSDAFLVL 463 Query: 428 GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLE 487 +GF+ + + ++ E+D+ G R+ + ++ +++ +L G PVVH+ Sbjct: 464 SELRNGFIFENQKILILSENDIFGREYKRKTRFKKQNSKA---LQSFIDLKEGDPVVHIH 520 Query: 488 HGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGG 547 HGVGR+ + AGG ++L L YA L+VP+ + LI RY GG E+ L LG Sbjct: 521 HGVGRFLKIERTNAGGKERDFLKLEYAGGDSLFVPLDQISLIQRYIGGT-ESPRLDSLGK 579 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607 + W + + + + V +A +L+ +Y+ R +G+AF D + F F +E TPDQ + Sbjct: 580 NTWKKTKDRVQKAVETLAEDLVQMYSNRLKLQGYAFPPDTIYQEEFEAEFEYEETPDQIE 639 Query: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667 AI AV D+ + MDRLVCGDVG+GKTEVA+RAAF +Q+ +L PTT+LA QHY+ Sbjct: 640 AIEAVKKDLESSVPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIMMLAPTTILALQHYN 699 Query: 668 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727 F++RF N+P+R+E++SRF+++ E +IL++ + GKID++IGTH +L S +K K+LGLLI Sbjct: 700 TFKNRFRNYPLRVELVSRFKTSAEIREILSDFSLGKIDMIIGTHAILSSKLKPKNLGLLI 759 Query: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787 +DEE RFGV HKE IK + VD+LTLTATPIPRTL+MA++G+R+LSIIATPP R +V+ Sbjct: 760 IDEEQRFGVNHKEAIKRFKNLVDVLTLTATPIPRTLHMALTGIRELSIIATPPKNRQSVE 819 Query: 788 TFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 847 T+V E D ++ EAI EI R GQV+YLYN VE I++ + L E+VPE I I HGQM E Sbjct: 820 TYVLEEDEDLIAEAIRNEIQRDGQVFYLYNRVETIEQETKYLGEIVPEVSIGILHGQMTE 879 Query: 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 E+E + DF+++++++LV TTIIE+GID+P NT+ ++RAD FGL+QL+Q+RGRVGRS Sbjct: 880 DEIEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFGLSQLYQIRGRVGRSD 939 Query: 908 HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSM 967 +A+A+LL P + +T A+KRL I ++LG+GF +A DLEIRGAG LLG+EQSG + Sbjct: 940 RKAFAYLLLPKDRVVTEQAEKRLNTIYEYQELGSGFKVAMRDLEIRGAGNLLGKEQSGDI 999 Query: 968 ETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFY 1027 +GF LY+ +LE A+ +K E + +T V L +P+ +I D ++ FY Sbjct: 1000 MEVGFDLYVRMLEEAIARIKGE-----EVVVEVRTSVTLNTNFFIPETYISDTRQKIEFY 1054 Query: 1028 KRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVI 1087 K+ A+ E++E+ E+++RFG P+ ART + + ++R A LG + + + Sbjct: 1055 KKFEGARDLQEIDEVYREMVERFGDPPEDARTFILLEKIRTLASNLGFESVTETKDEIKL 1114 Query: 1088 EFAEKNHVNPAWLIGLLQ-KQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 + + + +I L+ P L F + K +++ + + E+ Sbjct: 1115 KSGSYFKGDHSKIIQLISAGTGLTLNPREPNVLIFQIGKTSEKEKLDTLIFLLSEM 1170 >UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Anaerococcus RepID=C7RHN4_ANAPD Length = 1170 Score = 1012 bits (2616), Expect = 0.0, Method: Composition-based stats. Identities = 340/1143 (29%), Positives = 604/1143 (52%), Gaps = 25/1143 (2%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 L LT LV + E+ +V+IA + + A D I+ + + Y Sbjct: 29 LSGLTDGFKPHLVLALFEKFKESLVIIAENEKRAEIYLDSINGIIENKAYLFPSLDINFY 88 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 + S +S R+ L +L + ++I + + ++ + + +K + Sbjct: 89 NIKSIDNRKLSQRMEVLTKLAKGENFIVITTLKAMTNKLTTLDRFNKSFVKIKDEDIIDV 148 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 + L + Y V G++A RG+++D +P+ + P R++ FDDE+DS+R+FD D Sbjct: 149 NNFIENLINLNYTANSLVENKGDFAKRGSIIDFWPVSYDNPVRIELFDDEVDSIRLFDKD 208 Query: 199 SQRTLEEVEAINLLPAHEFPTDKAAIE-LFRSQWRDTFEVKRDPEHIYQQ---------- 247 SQRT+E++ + P E K + + ++ R+ + D + I +Q Sbjct: 209 SQRTIEKISEAEISPVTELIYSKDDYDKVIKNINREIMSLDNDSKEINRQKLIDKYKQIT 268 Query: 248 --VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFEN 305 + + + I+ P + + Y P + L+ D+ E + FE+ Sbjct: 269 AFIEESMFVSNIDLVNP-YRKDDYSSFLDYIPKSGLIFF-DDVARVIEDYDNFYENFFED 326 Query: 306 RGV--DPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN--LGFQKLPDL 361 + + + + +D+++ ++ + + L + +K N + + + Sbjct: 327 LSLQMENNEVFKSFEHARILIDDIYEQIDKFRIINLTSILKKSKLFNPRKIIEIKTIESE 386 Query: 362 AVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR 421 + +D + + ++ + + + L + ++ + Sbjct: 387 NFNRRVDYFIDRTIELANSDKKVLILEGNEKTAFQLIDAYLEKDFTQVSKVGIGESFEKI 446 Query: 422 GRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQ 481 + + G+ + + ++ G R++ S+ + +I N ++L IG Sbjct: 447 PIQIANATSSSGYYIYDLDFYVFTHKEIYGSERKARKKKSKNKTSSRDII-NYSDLDIGD 505 Query: 482 PVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541 VVH +G+G Y G+ +E I +++++ Y KL+VPV ++LIS+Y G E+ Sbjct: 506 YVVHENNGIGIYKGLEKIEVNNIEKDFIVIEYRGTDKLFVPVDQMNLISKYIGSRGESPK 565 Query: 542 LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFET 601 L LG W +A+ +A + V ++A +L+++YA+R+ +G AF D F +SFP+E Sbjct: 566 LSSLGTQTWQKAKARAKKAVDEIADDLVELYAKRSKIKGHAFSKDTTWQNEFENSFPYEE 625 Query: 602 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLL 661 T Q ++I + +DM MDRL+CGDVGFGKTEVA+RAAF A+ + QVA LVPTT+L Sbjct: 626 TYSQIRSIEEIKNDMESDKPMDRLLCGDVGFGKTEVAIRAAFKAIMDGYQVAFLVPTTIL 685 Query: 662 AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 721 A QHY+ + RF +PV +++ISRF + I+ ++ GK+D++IGTH+LL DV +K Sbjct: 686 ANQHYETIKRRFDKFPVNVQVISRFNPGSKNKLIIKDLKAGKVDLIIGTHRLLSKDVGYK 745 Query: 722 DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781 +LGLLI+DEE RFGV+HKE++K +++++D+LTL+ATPIPRTL M++SG+RDLS + P Sbjct: 746 NLGLLIIDEEQRFGVKHKEKLKELKSSLDVLTLSATPIPRTLQMSLSGIRDLSTLDEAPE 805 Query: 782 RRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 841 R+ V T+V EYD+ ++++AI RE+ R GQVY++YN V +I+K L ELVP+A IAI Sbjct: 806 ERMPVNTYVLEYDNGIIKQAIERELNRNGQVYFVYNRVNDIEKLYNHLIELVPDANIAII 865 Query: 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901 HG++ +++E+ M +F ++L+ TTIIETG+DI NTIII +D GL QL+QL+G Sbjct: 866 HGRISPKQIEKTMLEFIDGEIDILLSTTIIETGMDISNVNTIIIYDSDMMGLGQLYQLKG 925 Query: 902 RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961 R+GR + +YA+ K ++ ++KRL++I D G+G+ +A DLE+RGAG LLGE Sbjct: 926 RIGRGNRSSYAYFTYRTGKILSEISEKRLKSIRDFSDFGSGYKIAMKDLELRGAGNLLGE 985 Query: 962 EQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVN 1021 QSG +E IG+ LY++ L+ AV+ +G+E ++D +++++ +P+ +I D Sbjct: 986 SQSGHVEAIGYDLYVKFLQEAVEK-ASGKEVEIKD--KSDVYIDIKVDGYIPNFYIEDQA 1042 Query: 1022 TRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGN 1081 ++ Y RIA + + + +E+ +LID +G +P L+ I+ ++ A +L ++ Sbjct: 1043 QKIEIYNRIARIQNQEDYDELVADLIDVYGDIPIMVDNLMYISLIKSMADELLFSEIREK 1102 Query: 1082 EKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRE 1141 I F K+ + L + Q + LD T F +S + ++ + ++ Sbjct: 1103 SGNVNIYFENKDAFSFEELAEINQSFERDMSLDLSTNPAFKIPVS--RNKLLDTYELLKT 1160 Query: 1142 LEE 1144 +E+ Sbjct: 1161 IEK 1163 >UniRef50_Q1Q1A4 Similar to transcription-repair coupling factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1A4_9BACT Length = 1092 Score = 1010 bits (2612), Expect = 0.0, Method: Composition-based stats. Identities = 388/1155 (33%), Positives = 608/1155 (52%), Gaps = 97/1155 (8%) Query: 3 EQYRYTL-PVKAGEQRLLGELTGAACATLVAEIAERH------AGPVVLIAPDMQNALRL 55 +QY+ + + +G+ + L G++ A +A H ++L+ PD ++A Sbjct: 12 KQYKEIIRQLSSGKGCCVNGLWGSSANLFAAAVANEHFYTKGLTPKILLVVPDAEDARED 71 Query: 56 HDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG------VLIVP 109 +++ F++ V E + + ++DI++ RL L QL + V++ Sbjct: 72 WEDLKTFSNLPVTLFPAVEDIFNNESDAYEDIMAQRLFILNQLCRKNKDASHQTDVIVSS 131 Query: 110 VNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALL 169 + L+Q V + + + +KGQ + L L S Y+ QV GEYA RG ++ Sbjct: 132 IQALIQPVPSKKTIGDNIVSFQKGQEYPMENLIGLLHSHHYQETSQVENQGEYAIRGGII 191 Query: 170 DLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRS 229 D+FP +E+P R+++F DEI+S+R F+V++Q+++ ++ + +L H+ Sbjct: 192 DIFPFATEIPCRIEYFGDEIESVRSFNVETQQSVAQINSCQILFVHK------------- 238 Query: 230 QWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLE 289 + P+ L Y T ++ Sbjct: 239 ---------------------------MYGLHPMQGEIQKTSLLDYLSGETTIILKEPTR 271 Query: 290 TSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAA 349 ++ Q + ++ +E+F +LK + ++ L LP Sbjct: 272 IESKLRQMLEITDYKEAL--------------FTEEEIFKQLKTFTKITLS--KLPFTTE 315 Query: 350 NANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAP 409 N FQ Q + + +K E D +VF + + E+ + + Sbjct: 316 NNAYAFQVKAIDEFPRQIQDIVAEFKKITEAHDKTIVF-CINPAEEQRFREITSGLPEGL 374 Query: 410 QRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDT 469 QR L G GF N+A++ ++ R + + + + Sbjct: 375 QRFE-----------LRRGYISQGFRFADINIAILANHEIF-HRYKQHHEVKK--VVQTR 420 Query: 470 LIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLI 529 I + +L G +VH+ HG+GR+ G+ +E G EYL+L Y K+YVP + + L+ Sbjct: 421 AIDSFLDLKKGDYIVHVTHGIGRFLGIEIIEDDGCKREYLVLEYDEGTKIYVPATKIELV 480 Query: 530 SRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQ 589 +Y G + A L K+ +W +++A V D+A++LL I A R AKEG + D + Sbjct: 481 QKYIGASGHKAKLDKIHSKSWEMRKKRAEHAVADIASDLLHIQASRNAKEGITYPPDTKW 540 Query: 590 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH 649 + F +F +E TPDQ Q + + SDM MDRL+CGDVG+GKTE+A+RAAF A Sbjct: 541 QRDFESAFIYEETPDQLQVLETIKSDMQSKRPMDRLICGDVGYGKTELAIRAAFKAAMYG 600 Query: 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIG 709 KQ AVLVPTT+LAQQHY F +R A++PV IE++SR +S KEQ IL + GKIDILIG Sbjct: 601 KQAAVLVPTTILAQQHYTTFSERMADYPVEIEVLSRLKSHKEQKDILEKTLAGKIDILIG 660 Query: 710 THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSG 769 TH+LLQ DV FKDLGL+I+DEE RFGV HKER K MR VD+LTLTATPIPRTL+M++ G Sbjct: 661 THRLLQKDVVFKDLGLVIIDEEQRFGVAHKERFKKMRQVVDMLTLTATPIPRTLHMSLMG 720 Query: 770 MRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 ++D+S + TPP R +++T + +D +R+AIL E+ R GQVY+++N V NI++ A L Sbjct: 721 IKDISSLNTPPLGRQSIRTQIMRFDPQRIRQAILLEMNRNGQVYFVHNRVYNIERIAHTL 780 Query: 830 AELVPEARIAIGHGQ-MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 + +VPEARI + HGQ M E+ L + M DF + ++LV TTIIE+G+DIP NTI I A Sbjct: 781 STIVPEARILVVHGQMMDEKLLAQRMKDFVDHKADILVSTTIIESGLDIPNVNTIFINCA 840 Query: 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATH 948 D FGLA LHQLRGRVGR H AYA+++ P + +T +A+KR++AI +LGAGF +A Sbjct: 841 DSFGLADLHQLRGRVGRYKHHAYAYIVLPIDRPVTPEAEKRVKAIEEFAELGAGFKIAMR 900 Query: 949 DLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRM 1008 DLEIRGAG +LG EQ G + +G+ +Y LLE AV KA EP E ++L + Sbjct: 901 DLEIRGAGNILGVEQHGHIAAVGYEMYCRLLEIAV--CKARNEPVSE---PPDVSLKLNL 955 Query: 1009 PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQ 1068 S LPD++IP+ + ++ Y+R+ + T E++EI+ E+IDRFG P + LL + LR Sbjct: 956 ESFLPDEYIPEYSLKMDIYRRLNRSNTFKEIDEIRKEMIDRFGNAPQSVKNLLSESELRI 1015 Query: 1069 QAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTR--LKFIQDLS 1126 A+ IR + +I+ + L K ++ R+ L+ ++D Sbjct: 1016 IARDSKIRSIVRVNNTLIIQVNDLKKAEIC-----LSKLKKNIRVINNDTLHLRLLKDRM 1070 Query: 1127 ERKTRIEWVRQFMRE 1141 + + ++++ + + Sbjct: 1071 HPEDLVHYLKKSLTD 1085 >UniRef50_Q7UQN7 Transcription-repair coupling factor n=1 Tax=Rhodopirellula baltica RepID=Q7UQN7_RHOBA Length = 1181 Score = 1009 bits (2610), Expect = 0.0, Method: Composition-based stats. Identities = 379/1103 (34%), Positives = 587/1103 (53%), Gaps = 80/1103 (7%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 + G L A + H V+++ P +A + ++S F + V+ L Sbjct: 117 FSGVWGGIRGLLAAALTRHHPH-VLVLLPQAVDADIVAGDVSSFGIEDVVALPLSAGDGT 175 Query: 79 DSFSPHQDIISSRLSTLYQL----PTMQRGVLIVP-VNTLMQRVCPHSFLHGHALVMKKG 133 S D ++RL L +L + +++ + +QRV + L + G Sbjct: 176 GSSIRDADY-AARLQVLQRLRARDQHSPKPLVVTSYIGAAIQRVPSVTSLEKATRELAVG 234 Query: 134 QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193 + + +R L AG+ V V GE+A+RG LLD++ P R+++FDDEI+S+R Sbjct: 235 DIVDPEVIRRWLAEAGFAAVTAVQVPGEFASRGGLLDVYSPDQPQPIRIEWFDDEIESIR 294 Query: 194 VFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTL 253 FD +QR+ E + + L P + F + + + V T+ Sbjct: 295 RFDAATQRSSETLSKVELAAIGTQPV------------KSPFAEEENNDEPLDLVVDDTV 342 Query: 254 PAGIEYWQPLFFSEPLPPLFSYFPANT--LLVNTGDLETSAERFQADTLARFENRGVDPM 311 G E + Y P +T L+++ D S+ A Sbjct: 343 --GAE-----------ATIVDYLPEDTVVLVIDPSDCHQSSNALLARVAKT--------- 380 Query: 312 RPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQ-AQQKAP 370 ++ + EL SELK+ V + + +L A + K+ Sbjct: 381 -------ERFVSMRELLSELKSHKVVTGTSLAEGAPSDVVDLHTASADSFATSLDETKSK 433 Query: 371 LDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAA 430 +D++ E V+ ++ + L ELL D A ++ + Sbjct: 434 VDSVAAGHE-----VIVVGDTPADGQRLTELLEDT----------DAAKQGRLHMTVADL 478 Query: 431 EHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 GF T + ++ ++L RR + R I + +L G V+HL HG+ Sbjct: 479 SGGFRLTDAEILVLTGAELFHRSPVRRAKTRTR----GKPIDSFTQLTPGDLVIHLSHGI 534 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW 550 G Y G+ ++E G E+L + + K++VP S + L+ RY GG + L K+GG +W Sbjct: 535 GLYRGLNSIEKNGQHQEHLTIEFDGGTKIHVPASRIQLVQRYVGGTKNRPKLAKIGGISW 594 Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 + ++ A V D+A ELL++ A+RA + G D E + F SFP+ TPDQ AI Sbjct: 595 TNQKKAAEAAVTDMADELLELQAKRATRLGIPMSPDNEWQRQFDASFPYLETPDQLSAIE 654 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 A+ DM P MDRL+CGDVGFGKTEVAMRAAF AV + QVAVLVPTT+LA+QHY +FR Sbjct: 655 ALKIDMEAPRPMDRLICGDVGFGKTEVAMRAAFKAVSSGYQVAVLVPTTVLAEQHYQSFR 714 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 +R A +PV I +SRF + EQ + + E+ GK DI+IGTH++ DV+F +LGL+++DE Sbjct: 715 ERMAEFPVEIRKLSRFCTPAEQRETVKEIRRGKADIVIGTHRVASKDVEFNNLGLVVIDE 774 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 E RFGV KER+K +NVD+LTL+ATPIPRTL+MA+ G+RD+S + TPPA R+AV+T V Sbjct: 775 EQRFGVAVKERLKTQHSNVDVLTLSATPIPRTLHMALVGVRDISNLETPPAERMAVETKV 834 Query: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 +D ++R AI+RE+ RGGQ+Y+++N + ++ A R+ +VPE RI IGHGQM E L Sbjct: 835 TRWDDKMLRSAIVRELNRGGQMYFVHNRIGDMDDLAARIKAIVPELRIGIGHGQMEEGAL 894 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 E+VM DF +F++L+ TTIIE+G+DIP ANT+ I+ + +GL+ LHQLRGRVGR HQA Sbjct: 895 EQVMVDFIDHKFDMLLATTIIESGLDIPNANTMFIDDGNRYGLSDLHQLRGRVGRYKHQA 954 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 Y +LL K +T +A KRL AI +GAGFA++ DLEIRGAG LLG +QSG + + Sbjct: 955 YCYLLVSPNKRLTPEASKRLRAIEEYSQMGAGFAISMRDLEIRGAGNLLGSQQSGHIAAV 1014 Query: 971 GFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI 1030 G+ +Y +LLE+AV + L S +++L + + LP+D++P++ ++ Y+R+ Sbjct: 1015 GYEMYCQLLEDAVRQAQ-----KLPPKLSADVDIDLPIEAYLPEDYVPNLRHKIDLYRRM 1069 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFA 1090 + +++ I+ EL DRFG P PA +L++ LR A G+ L N++ V++++ Sbjct: 1070 TRIEKAADVKAIREELEDRFGSPPPPAIRMLELCELRLDAASWGLVSLTTNDRFIVLQYS 1129 Query: 1091 EKNHVNPAWLIGLLQKQPQHYRL 1113 ++ +N L + R+ Sbjct: 1130 NRSRMN-----QLAKNSSIPIRI 1147 >UniRef50_C6XGB7 Transcription-repair coupling factor n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XGB7_LIBAP Length = 1187 Score = 1008 bits (2607), Expect = 0.0, Method: Composition-based stats. Identities = 381/1163 (32%), Positives = 616/1163 (52%), Gaps = 43/1163 (3%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADW 73 ++ L + ++AEIA R +V I D + + L ++ V+ W Sbjct: 16 KKITLSPVIDGTEGFILAEIA-RLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAW 74 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQL----PTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 + LPYD SP +++ RLS + L + + +++ V+ +M R + + L Sbjct: 75 DCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLS 134 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 ++ ++ + +L++ G++ V+ V + GEYA RG +LD++ + P RLDFF + I Sbjct: 135 IQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKYPVRLDFFGNTI 194 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVS 249 DSLR+FD +QRT+ E+ + E I FR + F + +Y +S Sbjct: 195 DSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANFGTTTQEDPLYVAIS 254 Query: 250 KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAER-------FQADTLAR 302 +G G+E+W P F+ + + +F Y ++ + ET+ +R ++A Sbjct: 255 QGRRYPGMEHWLPFFY-QSMETIFPYLSEFCIITDPLVKETARKRSQLIQDYYEARLQYS 313 Query: 303 FENRGVDPMRPLLPPQSLWLRVDELFSELKN-WPRVQLKTEHLPTKAANANLGFQKLPDL 361 + + +P+ P+ L+L + + ++ VQ+ + A N + P Sbjct: 314 SDKKQYSVYKPI-APEKLYLNYQQFDALIQTTHKLVQMTAFNQQETAHNRVVHLNAFPGK 372 Query: 362 AVQAQQKAPLDALRKF---------------LETFDGPVVFSVESEGRREALGELLARIK 406 + +++ + + S S+G + L L+ Sbjct: 373 SWVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHG 432 Query: 407 IAP----QRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR 462 + ++ +I GF +++ L+ E+DLLG+++A RR + Sbjct: 433 FKKIKKINTLTEINSLLKEEIAAVILPINQGFE--TKHMILVTETDLLGKKIA-RRVVRK 489 Query: 463 RTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVP 522 + ++ + + + + G +VH EHG+GR+ + ++E G + L L YA++AKL+VP Sbjct: 490 KNVHAQSFFDS-SNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVP 548 Query: 523 VSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582 V ++ LISRY L KLGG AW + +++ D+A +L+DI A+RA Sbjct: 549 VENIDLISRY-STEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPP 607 Query: 583 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 642 ++ Y F FP T DQ +AI+AV+ D+ MDRL+CGDVGFGKTE+A+RAA Sbjct: 608 LMVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAA 667 Query: 643 FLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 702 F+AV N QVAV+ PTTLL +QH+ F +RF + VRI ISRF KE + EG Sbjct: 668 FIAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEG 727 Query: 703 KIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRT 762 ++DI+IGTH LL + F +LGL+I+DEE FGV+HKE +K V +LTL+ATPIPRT Sbjct: 728 QVDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRT 787 Query: 763 LNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENI 822 L +A++G+R+LS+I+ PP R+A +T + +D +VVRE ++RE RGGQ +Y+ + ++ Sbjct: 788 LQLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDL 847 Query: 823 QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 +K L VPE +IA+ HGQM + LE MN F+ +++VL+ T+I+E+G+D+P ANT Sbjct: 848 EKCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANT 907 Query: 883 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAG 942 +I++RAD FGLAQL+QLRGRVGRS ++A L P + +T AQKRL + SL LGAG Sbjct: 908 MIVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAG 967 Query: 943 FALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQT 1002 F LA++DL+IRG G LLGEEQSG + IGF LY ++LE V ++K ++ D Sbjct: 968 FQLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLVESDW---SP 1024 Query: 1003 EVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLD 1062 +V + ++P+ ++ D+N RLS Y+R+ + ++ K E++DRFG LP LL Sbjct: 1025 QVLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVIHLLK 1084 Query: 1063 IARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFI 1122 + L+ + I K++ KG +I+F K NP L+ + +Q + L F Sbjct: 1085 VVFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIRPDQNLVFD 1144 Query: 1123 QDLSERKTRIEWVRQFMRELEEN 1145 L R ++ + L Sbjct: 1145 CLLPTINQRFFEAKRIITHLINM 1167 >UniRef50_A4A0Y1 Transcription-repair coupling factor n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A0Y1_9PLAN Length = 1077 Score = 1007 bits (2605), Expect = 0.0, Method: Composition-based stats. Identities = 372/1144 (32%), Positives = 604/1144 (52%), Gaps = 100/1144 (8%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 E + AG + + + G+ACA + A I AGP++++ P + + + D + F Sbjct: 26 EFRELVTQIAAGRKGTIEGVWGSACALITAAIEPDIAGPLLVVCPSLADIDDVSDALRTF 85 Query: 63 TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM-QRGVLIVPVNTLMQRVCPHS 121 + ++ WE+ + H +I RL L QL Q +++ + +L+Q V + Sbjct: 86 SSAEIVQFPAWESDRSERLL-HDEIYGRRLRVLKQLTHGPQPAIIVTSIESLLQPVPSAA 144 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 + ++ + G +L + L L + V GE++ RG +LD+F E P R Sbjct: 145 NVAANSRRVAVGDQLDVEELAQWLVRHKFHSTSAVELPGEFSLRGGILDVFAPDWEQPAR 204 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP 241 ++ F DEI+S+R F++ +QR+L +E + + Sbjct: 205 IELFGDEIESIRQFEIGTQRSLHPLETVEITVLR-------------------------- 238 Query: 242 EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFP--ANTLLVNTGDLETSAERFQADT 299 + Y P + +L+ ++ SAE++ D Sbjct: 239 ----------------------YGKGQTGHFSDYLPTASACVLIELERMKDSAEQYL-DR 275 Query: 300 LARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLP 359 L + E++ + E +L+ + L A+ L F+ + Sbjct: 276 LEKIEDK---------------FGLHETLQKLQPLGSLSLSGVASGHLDASLTLHFESVE 320 Query: 360 DLAVQAQQ-KAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEA 418 + + ++ + L+AL + V ++E + L E+ ++ Sbjct: 321 QFSGEIERVRGELEALSNGQD-----VYIICQTEAEIDRLSEVFEGGELQRA-------- 367 Query: 419 SDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELH 478 Y +G GF ++ L+ L RV R+R +R+ +I + +L Sbjct: 368 --GRLYFALGRLPQGFRYREESVVLVSGDQLF-HRVRRQRPATRKL---GKVIDSFLDLR 421 Query: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEE 538 G VVHL HG+GRY G+ +E E+L + + K+YVP S + L+ +Y GG++ Sbjct: 422 KGDLVVHLAHGIGRYRGLKKIEKQRQVEEHLEIEFHGGTKVYVPASKVELVQKYVGGSKS 481 Query: 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFP 598 PL K+GG W + ++ + V D+A ELL++ A R ++ G AF D + F SFP Sbjct: 482 RPPLAKIGGVTWQKQKKAVEQAVHDLAGELLEVQAMRRSRPGIAFSADTLWQREFDLSFP 541 Query: 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 658 +E T DQ AI + DM QP MDRL+CGDVGFGKTEVAMR AF AVDN QVA+LVPT Sbjct: 542 YEETTDQLTAIGNIKFDMEQPRPMDRLLCGDVGFGKTEVAMRGAFKAVDNGYQVAILVPT 601 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 T+LA+QHY + R+R A +P I +SRF SAKEQ ++ + +G IDI++GTH+L DV Sbjct: 602 TILAEQHYKSLRERMAEFPFTIARLSRFASAKEQRDVVKGLKDGTIDIVVGTHRLASKDV 661 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 F++LGL+++DEE RFGV KER+K +R VD+LT+TATPIPRTL+M++ G+RD+S + T Sbjct: 662 SFQNLGLVVIDEEQRFGVEIKERLKQLRTTVDVLTMTATPIPRTLHMSLVGVRDISNLET 721 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 PP R+AV+T V + ++R A+LRE+ RGGQ+++++N V++I+ A +L +VPEA+I Sbjct: 722 PPLDRVAVETKVSRWGDELIRHAVLRELSRGGQIFFVHNRVQDIELIAAKLQRIVPEAKI 781 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 IGHGQM E LE+VM DF +F++L+ TTI+E+G+DIP ANTI I+ A+ +GL++LHQ Sbjct: 782 GIGHGQMGEGALEKVMTDFIAGKFDLLLATTIVESGLDIPNANTIFIDEANRYGLSELHQ 841 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 LRGRVGR H+AY ++L + ++ A KRL AI +GAGFA++ DLEIRGAG + Sbjct: 842 LRGRVGRYKHRAYCYMLLQPGRHLSPVAAKRLHAIEEFSHMGAGFAISMRDLEIRGAGNI 901 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIP 1018 LG +QSG + T+G+ LY +LLE AV +K + + +V+L + LPDD++ Sbjct: 902 LGTQQSGHIATVGYELYCQLLETAVRRMKR-----MPSKMTIDVDVDLPGETYLPDDYVN 956 Query: 1019 DVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 D+ ++ Y+R+ ++ +L +K E+ DRFG PDP +L + ++ A I + Sbjct: 957 DMRQKIDLYRRMTRVASDEDLTNLKEEMQDRFGPFPDPVERMLRMTEIKLDAAFWQINAI 1016 Query: 1079 EGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQF 1138 E+ V++++++ V L + + + +R+ + L + + + Sbjct: 1017 FLEEEYLVLQYSDRGRVE-----QLARLRGRDFRIVDDKSVYV--PLKSNEQDADAIINK 1069 Query: 1139 MREL 1142 + + Sbjct: 1070 TKSI 1073 >UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rothia mucilaginosa RepID=D2NP15_9MICC Length = 1330 Score = 1006 bits (2602), Expect = 0.0, Method: Composition-based stats. Identities = 408/1140 (35%), Positives = 601/1140 (52%), Gaps = 86/1140 (7%) Query: 10 PVKAGEQRLLGELTGAACATLVAEIAERHAGPV-----VLIAPDMQNALRLHDEISQFTD 64 P + + L+G + G A L+A+I+ ++IAP + A L + + Sbjct: 122 PTERSARTLIGAVAGTH-AALIADISTAVRDTTAEALSLIIAPTDRQAEDLAAALRSYLP 180 Query: 65 QM-VMNLADWETLPYDSFSPHQDIISSRLSTLYQL---PTMQRGVLIVPVNTLMQRVCPH 120 + WETLP++ SP D + RL L + + V+I PV ++Q + Sbjct: 181 AADIALFPAWETLPHERLSPRSDTVGRRLQVLRAMTGDADKRPQVVIAPVRAVIQPIVT- 239 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 + + +G+ + L+ A Y VD V + GEYA RG ++D+FP + P Sbjct: 240 GIEKLEPVHLVRGEEYPFKDVVRGLNDAAYSRVDLVAKRGEYAVRGGIIDVFPPTATTPV 299 Query: 181 RLDFFDDEIDSLRVFDVDSQRTL---EEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEV 237 RL+FF DE+D +R F V QRTL EE+ + LLP E + D Sbjct: 300 RLEFFGDELDEMRHFSVADQRTLSGGEELTELTLLPCRELLITPEVMSRAARLKADY--- 356 Query: 238 KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG---------DL 288 + ++++ G G+E PL E + L PA ++++N DL Sbjct: 357 -PAAAAMLEKIAGGIYVEGMESLTPLLI-ESMNTLTELLPAGSMIINVEPERVRARAEDL 414 Query: 289 ETSAERFQA---DTLARFENRGVDPMRPLLPPQSLWLRVDE-----LFSELKNWPRVQLK 340 + E F A DT A + + L S + +D+ L ++L W +L Sbjct: 415 VATNEEFLAAAWDTSAEADAVAPIDLGQLRMSDSGFRTIDQTTAQALEAKLSWWEITELV 474 Query: 341 TEHLPTKAANANLG----------------FQKLPDLAVQAQQKAPLDALRKFLETFDGP 384 T+ + A L P A + L + + Sbjct: 475 TDADLLEDAAGALQNQNIADAIEDGIDTYTVNATPATAFNGSVERMLSQVGDLIRQ-QWT 533 Query: 385 VVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG---------RYLMIGAAEHGFV 435 V+ G + L +L + AP + + + A GF+ Sbjct: 534 VLALTNGRGSTDRLIDLFHSGEGAPAVPAARRTSLEADPAGKLEHGIVEVCEAPASAGFL 593 Query: 436 DTVRNLALICESDLLGER---VARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGR 492 LA+ E++LLG R R + + L+ G VVH HG+GR Sbjct: 594 VEEAKLAVFTEAELLGRRGTYAPRGAAGQKFKTRRRRNAVDPLALNPGDYVVHERHGIGR 653 Query: 493 YAGMTTLEAGGIT--------GEYLMLTYAND------AKLYVPVSSLHLISRYAGGAEE 538 + MT+ G + EYL++ YA +L+VP L LIS Y GG E Sbjct: 654 FVEMTSRPVAGASPVNGVQPMKEYLVIEYAPAKRGGAPDRLFVPSDQLDLISNYVGG--E 711 Query: 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFP 598 N L K+GG W++ + +A + V+++AA+L+ +Y+ R A G AF D + +SFP Sbjct: 712 NPSLSKMGGSDWAKTKSRARKAVKEIAADLVKLYSARQASRGHAFAADTPWQRELEESFP 771 Query: 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 658 + TPDQ AI+ V DM + + MDRL+ GDVGFGKTEVA+RAAF AV + KQVAVLVPT Sbjct: 772 YNETPDQLTAIHEVKEDMEKEIPMDRLISGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPT 831 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 TLLAQQHY+ F +RF+ +PV+I ++SRF+ AKE QI E+A G +D++IGTH++L V Sbjct: 832 TLLAQQHYETFSERFSGFPVKIRVLSRFQKAKETRQITEEIASGAVDVVIGTHRILSDSV 891 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 FKDLGL+I+DEE RFGV HKE++K MR NVD+L ++ATPIPRTL M+++G+R+ S +AT Sbjct: 892 VFKDLGLVIIDEEQRFGVEHKEKLKQMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLAT 951 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 P R V TFV + AI REI+R GQV++++N V +I A + +LVPEARI Sbjct: 952 APEERHPVLTFVGPRTDSQITAAIRREIMREGQVFFVHNRVADIDDVAAEIGKLVPEARI 1011 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 A HG+M E LE+++ DF +RF+VLVCTTI+ETG+DI ANT+I++ A ++GL+QLHQ Sbjct: 1012 ATAHGRMSESRLEQIIVDFWERRFDVLVCTTIVETGLDISNANTLIVDHAQNYGLSQLHQ 1071 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 LRGRVGR +AYA+ L P K + A +RL+A+A+ +LGAG LA DLEIRGAG L Sbjct: 1072 LRGRVGRGRERAYAYFLYPVDKTLGEIAHERLKAVATHNELGAGLQLAMKDLEIRGAGNL 1131 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIP 1018 LG EQSG + +GF LY+ L+ AV + +E +T+++L + + +P +I Sbjct: 1132 LGGEQSGHIAGVGFDLYLRLVGEAVANYRGEKEER-----EVETKIDLPVNAHIPHTYID 1186 Query: 1019 DVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 RL Y++IA+A TE ++ E + EL+DR+G LPD LL +A +R A+ GI ++ Sbjct: 1187 SERLRLQAYRQIAAADTEEKIAEAREELVDRYGELPDAVENLLAVATVRMHARAAGIHEM 1246 >UniRef50_Q1RI82 Transcription-repair-coupling factor n=16 Tax=Rickettsia RepID=MFD_RICBR Length = 1120 Score = 1006 bits (2602), Expect = 0.0, Method: Composition-based stats. Identities = 355/1134 (31%), Positives = 597/1134 (52%), Gaps = 37/1134 (3%) Query: 25 AACATL-VAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMNLADWETLPYDSFS 82 AA + + + VL+ + + AL+L+ + F + + ++T+PYD S Sbjct: 9 AAKSFFTIDSFIKNSKQDFVLVTSNEEEALQLYKQALFFLPSENIYYFPSYDTIPYDHTS 68 Query: 83 PHQDIISSRLSTLYQLPTMQ-RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDAL 141 P+ +I+S R TL +L T + ++I L+ ++ P F + L + +LS + L Sbjct: 69 PNCNILSKRAETLSKLTTNKGNKLVITHATNLLNKLPPKDFFAKYYLKLFPKMKLSANEL 128 Query: 142 RTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR 201 L + ++ GE+A RG ++DL S+ YR++F D ++S++ FD+D+Q Sbjct: 129 SKFLVENSFTRNASTVDVGEFAVRGEIVDLILPESKG-YRINFSWDYVESIKQFDIDTQI 187 Query: 202 TLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQ 261 + + + PA+E + I F+ + F V +Y+ ++ G +G E Sbjct: 188 STRSCNELIISPANEIVLNPETISNFKDNYLRNFGVNHTDNPLYEAITGGRKFSGYEQLL 247 Query: 262 PLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENR------GVDPMRPLL 315 PLF+ + L Y N +++ + + F+ ++ R + P L Sbjct: 248 PLFY-DSYSGLTDYL-NNPVIIFDNLTKQAILEFEHSYNDFYKARLDANKLKFNSFYPTL 305 Query: 316 PPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALR 375 P L+ E L+ + + E+ + N+ A ++K D L Sbjct: 306 SPSQLYFTSLEAIELLEQENNILISYENSEQASIVENIAA------ASFVEKKTIFDKLF 359 Query: 376 KFLETFD-GPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGF 434 + ++ ++ E + ++ + + I L+EA + I F Sbjct: 360 EVIKANSRKKIIIGSSVLSSFERVKSIIENYEYSYNEIEYLEEAKTNTINIAILPLNQSF 419 Query: 435 VDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYA 494 I S+LL E+V + + ++ L L G+ +VH +HG+G++ Sbjct: 420 STPE--YLFIAASELLEEKVTPTNTNKKLK----NILLELDHLAEGELIVHKDHGIGQFL 473 Query: 495 GMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRAR 554 + LE G ++L + YA + KLY+PV ++ +I +Y + A L KLG +W + + Sbjct: 474 KLEALEIKGKLHDFLKILYAGNDKLYIPVENIEVIKKYGS---DVAQLDKLGSVSWQKNK 530 Query: 555 QKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLS 614 K +++++A L+ I A+R A + D E+Y FC FPF T DQ AIN + Sbjct: 531 AKLKNRIKEIALHLMQIAAKRKLNTTAAIEFDLEEYDKFCAKFPFTETEDQLNAINDIRE 590 Query: 615 DMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV----DNHKQVAVLVPTTLLAQQHYDNFR 670 D+ + MDRL+CGDVGFGKTEVAMRAAF+ +N QVAV+VPTT+L QH+ F Sbjct: 591 DLSNGMLMDRLICGDVGFGKTEVAMRAAFMVAKSLNENSPQVAVVVPTTILCSQHFARFT 650 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 +RF + + I+ +S S+KE + +E+ GKI+I+IGTH LL KF +L LLI+DE Sbjct: 651 ERFKDSDLNIKQLSSVVSSKEAKIVRSELESGKINIIIGTHSLLHKVTKFCNLKLLIIDE 710 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 E FGV KE +K+++++ +L ++ATPIPRTL M+M+G+++LSIIATPP RL V+T V Sbjct: 711 EQHFGVGQKEFLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSV 770 Query: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 +D +++R+A+L E RGG+ +++ + +I+ ++L ++VPE + HG+M ++ Sbjct: 771 MPFDPVIIRDALLHEHFRGGKSFFVVPRINDIEDIEKQLKQIVPELSYKVAHGKMSPNKI 830 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 + +M++F+ +F++L+ TTIIE+GIDI ANT+II +AD GL+QL+QLRGR+GR + Sbjct: 831 DEIMSEFYAGKFDILISTTIIESGIDIQDANTMIIHKADMLGLSQLYQLRGRIGRGKMRG 890 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 YA+L P K MT + +RLE I + LG+GF +A+HD+++RG G L+GEEQSG + + Sbjct: 891 YAYLTLPSHKKMTPHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGEEQSGQIREV 950 Query: 971 GFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI 1030 G LY E+LE + K + + L + +PD+++ D +L Y+RI Sbjct: 951 GTELYQEMLEEQIAIFKDEPISGEQPFI---PTINLGLSVFIPDNYVSDSVLKLGLYRRI 1007 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFA 1090 + + E+E+ K E+IDRFG LP LLDI +++ KL I L+ + G VI+F Sbjct: 1008 GNLNDDLEVEKFKDEMIDRFGSLPTEFNNLLDIVKIKLLCFKLNIENLDSGDNGFVIKFY 1067 Query: 1091 EKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 + + ++ + + ++ +L FI+ L KT I Q + L E Sbjct: 1068 KNADM-ADKILKFVSTYTANAKIKPDNKLVFIKKLV-GKTIITEANQLLWNLSE 1119 >UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Atopobium RepID=C8W8X2_ATOPD Length = 1147 Score = 1003 bits (2593), Expect = 0.0, Method: Composition-based stats. Identities = 359/1098 (32%), Positives = 564/1098 (51%), Gaps = 35/1098 (3%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 PE + + G L L+ +A ++A + ++ P +L+ A R ++ Sbjct: 14 PELEKLKRELSCGSDATLS-LSQSARPLMLAALWSQNPRPCLLVVAGEDAADRTARSLAA 72 Query: 62 FTD-QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 + V+ + + P+ +P II +R + +L ++ +++ + LM+RV P Sbjct: 73 WLGNDAVLRYPNRKDYPWSDATPDDAIIGARCRAIAKLSAGEKVIVVASAHALMRRVPPV 132 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 + G + + + + L GY +V G + G +D+FP + P Sbjct: 133 GSGYFLPATFTVGDDVPFEDVASLLVGMGYADTGEVDAPGTFHIHGDTVDIFPAQATSPV 192 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R++FF DEID +R + +T+ ++ + + PA E K AI + Sbjct: 193 RIEFFGDEIDRIRRMVAATGQTIGAIDEVTVAPARELAFTKEAIRRAEEALYTRAQENSA 252 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL 300 + + +G +E + P+ + PL + + TL+V D Sbjct: 253 IAADLELIQRGAQAPALERYLPVLYGGTASPL-EHISSETLVVL-----AEPRSLFDDCQ 306 Query: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 360 F+ + L+ + + + R+ + A + L + Sbjct: 307 RAFDEISSSAAASKVKLDGLYTDPKAM--DFGSQQRLSFSSLLRTGAAVTSELSVVQP-- 362 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRL---DE 417 ++ L +R+ ++ D VVF+V RE L L + I + + +E Sbjct: 363 -SIAGSDTKLLGRVRQLVQDRD-AVVFAVPDRAAREHLKLLFSDESIPFEESLGTSLENE 420 Query: 418 ASDRGRYLMI---------GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPD 468 G Y+ + G + NL+++ SDL +++ R I+P Sbjct: 421 PDQNGVYVPLKRGRVTFTDAPVPAGIIIPTANLSVLSVSDLTARSARNKKRSKR--IDPT 478 Query: 469 TLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHL 528 T+ G VVH HG+ + + E G +Y +L YAND KLYVP+ + Sbjct: 479 TVTFPF---KPGDYVVHATHGIAHFTAIVRQEVAGRERDYFLLEYANDDKLYVPLEQVDR 535 Query: 529 ISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDRE 588 I+RY G N L +L WSRA KA + + +A +L+D+Y +RA+ G+AF D Sbjct: 536 ITRYVGPDGNNPRLTRLNTADWSRATNKARKSAKKLAFDLVDLYTRRASVPGYAFSLDTP 595 Query: 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 + SFP++ TPDQ A+ + DM MDRL+CGDVGFGKTEVA+RAAF A + Sbjct: 596 AQEEMESSFPYQLTPDQESAVADIKLDMEARKPMDRLLCGDVGFGKTEVALRAAFKACQD 655 Query: 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 708 +QV +L PTT+LAQQHY+ F RFA + +++ ++SRF + +Q + L A+G ID+L+ Sbjct: 656 ARQVMILCPTTILAQQHYETFFSRFAPFDLKVSVLSRFVTPAQQRKALEGFADGTIDVLV 715 Query: 709 GTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMS 768 GTH+LL +DV DLGL+I+DEE RFGV+HKE++K MR VD+LTL+ATPIPRT+ MAMS Sbjct: 716 GTHRLLSADVNPHDLGLVIIDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAMS 775 Query: 769 GMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAER 828 G+RD+S+I TPP R V+ V EY+ +V AI E+ R GQVYY+ N V I +A R Sbjct: 776 GVRDMSLILTPPPGRKPVQVTVGEYNPDLVSAAIRSELEREGQVYYVSNRVTTIDEAVAR 835 Query: 829 LAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 + E PEAR+ + HGQM RE+E VM F +VLV TTIIE+GID NT+IIE + Sbjct: 836 VEEAAPEARVGVAHGQMSAREVENVMLAFQEHEIDVLVATTIIESGIDNSHTNTLIIEDS 895 Query: 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATH 948 GLAQL+QL+GRVGR QAYA+ + P +T +A +RL AI +DLG+G +A Sbjct: 896 QRLGLAQLYQLKGRVGRGRQQAYAYFMFPAELPLTEEATERLTAINEFQDLGSGMRIAMR 955 Query: 949 DLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRM 1008 DLEIRGAG L+G EQ G++ ++GF L+ ++L AV + +L + + L Sbjct: 956 DLEIRGAGSLMGAEQHGNLSSVGFDLFTQMLGEAVAEARGESA----ELEQTEVTINLPA 1011 Query: 1009 PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQ 1068 L +D++P+V+ R+ Y+R+A+A ++++ ++ + + FG LP + L D AR+R Sbjct: 1012 DFFLDEDYLPEVDRRVLVYRRLAAATELSDIDALQQDTENSFGALPLAGKNLFDRARVRI 1071 Query: 1069 QAQKLGIRKLEGNEKGGV 1086 +AQ+LG + V Sbjct: 1072 RAQRLGATSVSLTNGRLV 1089 >UniRef50_C2KSG9 Possible transcription-repair coupling factor n=2 Tax=Mobiluncus mulieris RepID=C2KSG9_9ACTO Length = 1172 Score = 1001 bits (2589), Expect = 0.0, Method: Composition-based stats. Identities = 403/1123 (35%), Positives = 601/1123 (53%), Gaps = 66/1123 (5%) Query: 42 VVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM 101 V++ P + A L ++S +T + V DWETLP++ SP D ++ R+ L++L Sbjct: 41 TVILTPSGRGAEELARDLSCWT-RGVEVFPDWETLPHERLSPRTDTMARRIWALHRLTHP 99 Query: 102 QR-------------------GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALR 142 + L+VP+ + V L + G+ RD + Sbjct: 100 EAFGTEGTNSEVGESAEHNPIKFLVVPMRAALAPVNTK-ILSYPLFKAQVGKAYGRDEMS 158 Query: 143 TQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRT 202 L + GY + V+ G+Y+ RG ++D+F S P R++ F DEIDS+R F V QRT Sbjct: 159 RDLAALGYERTELVVTRGQYSLRGGIVDVFSAVSPHPVRIELFGDEIDSIRPFAVSDQRT 218 Query: 203 L-EEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQ 261 +E +++ EF D+ A R I ++G G+E Sbjct: 219 FNQEFQSVTAPACREFLLDETA----RVHAASLAAQLPQAAEILNLAAQGIYSEGLESLG 274 Query: 262 PLFFSEPLPPLFSYFPANTLLV--NTGDLETSA----ERFQADTLARFENRGVDPMRPLL 315 L +E + PLF P LV + LE A E A + PL Sbjct: 275 ALLGAE-MKPLFELLPPGARLVATDLPRLEARAVELGETTAEFLAASWSAAADGSEIPLE 333 Query: 316 PPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALR 375 + +L +D L L+ T + G + +P A + +R Sbjct: 334 INTASFLDLDALRVSEAKAGMKTLRISPFATHESATTSGAETVPLPTTGA--TGIISTIR 391 Query: 376 KFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG--RYLMIGAAEHG 433 + VV + S G + L LLA I Q LD +R ++ + G Sbjct: 392 ERAREH-WTVVIAATSNGMVQRLHRLLAENDIPAQVSADLDAEPERSGKTWVTVAPITEG 450 Query: 434 FVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRY 493 F L +I E++ LG+R AR + + + L G+ VVH +HG+GR+ Sbjct: 451 FALAEAKLLVISEAEALGKRQARHHEQKVKLPTRRRKTIDPLSLSPGEYVVHAQHGIGRF 510 Query: 494 AGMTTLEAG----GITGEYLMLTYAND------AKLYVPVSSLHLISRYAGGAEENAPLH 543 + G + EY++L YA L+VP SL ++S+Y GG E L Sbjct: 511 VKLEKRTIGKGNKATSREYVVLEYAPSQRQGSKDLLWVPTDSLDMLSKYVGG--ETPTLS 568 Query: 544 KLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTP 603 K+GG W++A+QKA + V+D+A EL+ +YA R + +G AF D + DSF + TP Sbjct: 569 KMGGTDWNKAKQKARKAVKDIARELVRLYAVRQSSKGHAFSPDTPWQRELEDSFEYVETP 628 Query: 604 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQ 663 DQ I+ V +DM +P+ MDRL+CGDVG+GKTE+A+RAAF AV + KQVAVL PTTLL Sbjct: 629 DQLTTIDEVKADMEKPVPMDRLLCGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLVS 688 Query: 664 QHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 723 QH + F++RFA +P+ + +SRF + KE T+I A++A+GKI++++GTH LL V+FKDL Sbjct: 689 QHLETFQNRFAAFPITVAALSRFTTVKEATRIKADLADGKIEVVVGTHALLSGKVRFKDL 748 Query: 724 GLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 783 GL+++DEE RFGV HKE +KA+R NVD+L ++ATPIPRTL MA++G+R LS + TPP R Sbjct: 749 GLVVIDEEQRFGVEHKEALKALRTNVDVLAMSATPIPRTLEMAITGIRGLSTLTTPPEER 808 Query: 784 LAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHG 843 V T+V Y V AI RE+LR GQV+Y++N V++I + A+ L LVPEARI +GHG Sbjct: 809 HPVLTYVGAYSDRQVAAAIRREMLRDGQVFYVHNRVQDIARVAKHLQSLVPEARIRVGHG 868 Query: 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903 QM E +LE+VM DF +Q F+VLV TTI+E G+D+ ANTIII+RA+ GL+QLHQLRGRV Sbjct: 869 QMPETQLEQVMMDFWNQEFDVLVSTTIVENGLDVTNANTIIIDRAERMGLSQLHQLRGRV 928 Query: 904 GRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQ 963 GR + YA+ L P ++ A +RL+ I S LGAG A+A DLEIRGAG LLG EQ Sbjct: 929 GRGRERGYAYFLYPGGDTLSETAFERLKTIGSNTSLGAGMAIAQKDLEIRGAGNLLGGEQ 988 Query: 964 SGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTR 1023 SG + +IGF LY+ ++ AV A E +E+ + + +P+D++ + R Sbjct: 989 SGHIASIGFDLYVRMVGEAVAAYNGE-----EPAEDTAVNLEIPVDAYIPEDYLEAQSLR 1043 Query: 1024 LSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 L Y R+++A + E++++ E+ DR+G P + L ++A+LR A+K G+R++ K Sbjct: 1044 LDAYTRLSNATLDEEIDQLLDEMDDRYGRPPSSVQRLGELAKLRNLARKYGLREIGVRGK 1103 Query: 1084 GGVI--------EFAEKNHVNPAWLIGLLQKQ---PQHYRLDG 1115 + A ++P +I L ++ P+ + +G Sbjct: 1104 FIRFTPVELADSQLARLKRLHPGAIIKLATRELFIPKPVKREG 1146 >UniRef50_C6X2W6 Transcription-repair coupling factor n=17 Tax=Bacteroidetes RepID=C6X2W6_FLAB3 Length = 1138 Score = 1000 bits (2587), Expect = 0.0, Method: Composition-based stats. Identities = 366/1161 (31%), Positives = 594/1161 (51%), Gaps = 81/1161 (6%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMNLADW 73 + G+A + AE+ V+ + D ++AL E+ + V+ Sbjct: 32 RHLSVKGSAGSAPSIFAAELFVTRKKTVLFLIEDKEDALYATAEMEDLLGKENVLYFPAT 91 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQL-PTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKK 132 PY + R L +L + + V+I P ++L ++V + +K Sbjct: 92 HLAPYQIEKTQNANLVLRTDVLNKLNASKKPKVIIAPFSSLSEKVLRKEDFKAISHRIKV 151 Query: 133 GQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 G+ L D L ++ D V E GE++ RG ++D+F +E PYR+ FF +EI+S+ Sbjct: 152 GESLDFDFTGELLQQFNFQLTDFVSEPGEFSVRGGIVDVFSYSNEEPYRISFFGNEIESI 211 Query: 193 RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGT 252 + F++++Q T +V L+ + + + Sbjct: 212 KTFNIETQLTNGKVNEFQLVSNMNYAVSGSKV---------------------------- 243 Query: 253 LPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAE--RFQADTLARFENRGVDP 310 L P ++ +V+ + + + F +E D Sbjct: 244 ------------------SLLGLLPNDSFVVSVNAILATRKISDFFTKADEYYEALNKDI 285 Query: 311 MRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANL-GFQKLPDLAVQAQQKA 369 PP L++ +E ++ + + + L T A+ L + + Sbjct: 286 KHQ--PPAELFVSEEEFLKDIAAFKHIDFTLDTLKTSQADTLLIQLNQTQQPGFHKNFEL 343 Query: 370 PLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMI-- 427 L+ L + + + S +E ++E L + I + I ++ + Sbjct: 344 LLEDLVEK-RNANFDIWISFSTEKQKERLEAIFKEISTPQEMISDSEDLPVFQQKAFFKS 402 Query: 428 --GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVH 485 GFVD +++ + + +R R + + + +++L ++ +G + H Sbjct: 403 FKSELHEGFVDADHKISVYTDHQIF-DRYQRFKAKNTFAKSEQLTLKDLMQMKVGDYITH 461 Query: 486 LEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKL 545 ++HG+G++ G+ + G E LTY N LYV + SLH IS+Y G L KL Sbjct: 462 IDHGIGKFMGLVKVNNNGKVQECFKLTYKNGDLLYVSIHSLHKISKYNGPDGREIVLSKL 521 Query: 546 GGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQ 605 G AW +QK KV+ +A +L+ +YA+R +GFAF D SF +E TPDQ Sbjct: 522 GSPAWKTLKQKTKAKVKQIAFDLIRLYAKRKTAKGFAFTPDSYLQNELEASFIYEDTPDQ 581 Query: 606 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 665 +A V +DM + MDRL+CGDVGFGKTE+A+RAAF A + KQVA+LVPTT+LA QH Sbjct: 582 EKATLDVKTDMEKETVMDRLICGDVGFGKTEIAVRAAFKAATDGKQVAILVPTTILAFQH 641 Query: 666 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 725 Y +F++R ++PV I ++RFR+AK++++ L +AEGKIDI+IGTH+L+ S VKFKDLGL Sbjct: 642 YRSFKERLKDFPVNISYMNRFRTAKQKSETLKGLAEGKIDIVIGTHQLVSSTVKFKDLGL 701 Query: 726 LIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785 LI+DEEH+FGV K+++K ++ N+D LTLTATPIPRTL ++ RDLS+I TPP R Sbjct: 702 LIIDEEHKFGVAVKDKLKTLKNNIDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQP 761 Query: 786 VKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQM 845 V+T + + ++R+AI EI R GQVY++ N +EN++ A + LVP+A++ GHGQM Sbjct: 762 VETSIVGFSEEIIRDAISYEIQRDGQVYFINNRIENLKDIAGLIQRLVPDAKVITGHGQM 821 Query: 846 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 905 ++LER + DF +++VLV TTI+E+G+D+P ANT+ I A FG+A LHQ+RGRVGR Sbjct: 822 EGKQLERNVLDFMEGKYDVLVSTTIVESGVDVPNANTMFINDAQRFGMADLHQMRGRVGR 881 Query: 906 SHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 S+ +A+ +L+TP MT+DA+KRLEAI DLG+GF +A DLEIRGAG+LLG EQSG Sbjct: 882 SNRKAFCYLITPPFDMMTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLLGGEQSG 941 Query: 966 SMETIGFSLYMELLENAVDALKAGRE-----PSLED-----LTSQQTEVELRMPSLLPDD 1015 + +GF Y ++++ A++ L+ E + ED ++++ ++ + +LPD Sbjct: 942 FINEMGFDTYQKIMQEALEELQNDEEFGELFENEEDRKKLFKSTKEVNIDTDLELMLPDV 1001 Query: 1016 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 ++ + RLS Y+++A + +L + + EL DRFG LP A+ LL L+ A ++G Sbjct: 1002 YVQSIEERLSLYQKLAEIQNRGDLRKFENELNDRFGALPPEAKNLLKSVELKWIAAEIGF 1061 Query: 1076 RKLEGNEKGGVIEFAEKNHVNPAW------LIGLLQKQPQHYRLDGPTRLKFIQDLSERK 1129 K+ + F +I L + P L + K ++ ++ Sbjct: 1062 DKIVVKNGVFLGYFPPNPQDKFYQSEKFRNIIAYLHQNPSEATL----KEKVNKEGNQLM 1117 Query: 1130 TRIEWVRQF--MRELEENAIA 1148 R E V+ + + E I Sbjct: 1118 MRKENVQNVDEVNRVLERIIG 1138 >UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Actinobacteria (class) RepID=A9WU24_RENSM Length = 1278 Score = 1000 bits (2587), Expect = 0.0, Method: Composition-based stats. Identities = 411/1172 (35%), Positives = 612/1172 (52%), Gaps = 69/1172 (5%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDS 80 L A A+ HAG V+ + + + L + + + V + WETLP++ Sbjct: 118 LAEVAEGLAAAQANGDHAGVVLAVTATSRESEDLVAALRAYLPEDAVADFPSWETLPHEL 177 Query: 81 FSPHQDIISSRLSTLYQLPTMQRG------VLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 SP D + RLS L +L G +++ PV ++Q + + + GQ Sbjct: 178 LSPRSDTVGRRLSVLRRLKHGGMGTTGPLRIVVAPVRAVVQPIV-QGLADLEPVELSIGQ 236 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 194 R D + +L A Y VD V GE+A RG ++D+FP P R++FF DE++S+R Sbjct: 237 RAPFDQVIRRLADAAYARVDMVTHRGEFAVRGGIIDVFPPTDPHPVRIEFFGDELESMRW 296 Query: 195 FDVDSQRTLEEVEAINLLPAHEFPTD------KAAIELFRSQWRDTFEVKRDPEHIYQQV 248 F V QRTL + P F ++ ++ +D+F + +++ Sbjct: 297 FAVADQRTLTSISGTIEHPKALFAPPCRELLITPEVQSKAAKLKDSFPA---AAAMLEKI 353 Query: 249 SKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV---------NTGDLETSAERFQADT 299 + G G+E P+ + + P+ + FP ++ V DLE + E F Sbjct: 354 AGGIAVEGMESLTPVLV-DSMVPVVAEFPPGSIAVVLEPERVRGRAHDLEATNEEFLEAA 412 Query: 300 LARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLP 359 + + G PL Q+L F+ L L+ + + + P Sbjct: 413 WSTASDGGAA---PLDVSQTL---ASASFASLAQTRGAALRAGVSWWSVSALGIDDETAP 466 Query: 360 DL-----------AVQAQQKAPLDALRKFLETFDG----PVVFSVESEGRREALGELLAR 404 +L Q L+ + + DG VV + + G + L EL Sbjct: 467 ELDVLSVPAREPRGYQGNVAEMLEFIGSRVRGNDGGGQWRVVVATDGPGPAQRLAELFHD 526 Query: 405 IKIAPQRIMRLDEASDRGRY-LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRR 463 I R+ LDE G + A HGFV + L+ E+DLLG A +D R+ Sbjct: 527 ADIPTARVDSLDEQPQLGIIEVTTAAVGHGFVLDGLKIGLLTEADLLGRSSASGTKDMRK 586 Query: 464 TINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGG--ITGEYLMLTYAN------ 515 + + +L G VVH +HG+GR+ + + G + EYL+L YA Sbjct: 587 MPSKRRNAVDPLQLRGGDFVVHEQHGIGRFLELIQRKVAGTDGSREYLVLEYAPSKRGAP 646 Query: 516 DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR 575 +L+VP L I+ Y GG L K+GG W+ + KA + V+++A EL+ +Y+ R Sbjct: 647 GDRLFVPTDQLDQITAYVGGDA--PALSKMGGSDWASTKNKARKAVKEIAGELIRLYSAR 704 Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 A GF+F D + ++FP+ TPDQ IN V +DM + + MDRLV GDVG+GKT Sbjct: 705 MASRGFSFSADTPWQRELEEAFPYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKT 764 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 E+A+RAAF AV + KQVAVLVPTTLLAQQHY+ F +RF+ +PVR++ +SRF+S KE + Sbjct: 765 EIAVRAAFKAVQDGKQVAVLVPTTLLAQQHYETFSERFSGFPVRVKPLSRFQSGKEAKET 824 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 VA G ID++IGTH+LL D FKDLGL+IVDEE RFGV HKE++K MR NVD+L ++ Sbjct: 825 AEGVANGSIDVVIGTHRLLSKDFAFKDLGLVIVDEEQRFGVEHKEQLKKMRNNVDVLAMS 884 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYL 815 ATPIPRTL M+++G+R+ S +ATPP R V T+V Y AI RE++R GQV+++ Sbjct: 885 ATPIPRTLEMSLTGIRETSTLATPPEERHPVLTYVGPYTDKQASAAIRRELMREGQVFFV 944 Query: 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 +N V +I++ A + +LVPEARIA+ HGQM E LE+++ DF +RF+VLVCTTIIETG+ Sbjct: 945 HNRVSSIERIAAHVQQLVPEARIAVAHGQMSESRLEQIIVDFWEKRFDVLVCTTIIETGL 1004 Query: 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 DI ANT+I++ AD +GL+QLHQLRGRVGR +AYA+ L P K + A +RL+A+A+ Sbjct: 1005 DISNANTLIVDGADKYGLSQLHQLRGRVGRGRERAYAYFLYPAEKPLGEVALERLKAVAA 1064 Query: 936 LEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLE 995 +LGAG LA DLEIRGAG LLG EQSG + +GF LY+ L+ AV + E Sbjct: 1065 HNELGAGMQLALKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRLVGEAVADYRGETEDK-- 1122 Query: 996 DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPD 1055 + ++EL + + LP D++P RL Y+++A+A + ++E+ EL+DR+G P Sbjct: 1123 ---AADMKIELPVNAHLPHDYVPGERLRLEAYRKLAAAASNAAIDEVLEELVDRYGEPPA 1179 Query: 1056 PARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGL----LQKQPQHY 1111 L+ + R R A+++G+ + A+ L + L K H Sbjct: 1180 AVVNLIAVDRFRVAAREVGLTDVAVQGNFVKFFPADLPESRQMRLQRMYPGSLIKPALHQ 1239 Query: 1112 RLDG-PTRLKFIQDLSERKTRIEWVRQFMREL 1142 L P + +EW Q + + Sbjct: 1240 ILVPRPKTARIGGRDLVDAQVLEWAEQVLTAI 1271 >UniRef50_Q11PH6 Transcription-repair coupling factor n=5 Tax=Bacteroidetes RepID=Q11PH6_CYTH3 Length = 1122 Score = 1000 bits (2586), Expect = 0.0, Method: Composition-based stats. Identities = 372/1161 (32%), Positives = 583/1161 (50%), Gaps = 84/1161 (7%) Query: 5 YRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD 64 + L + L L+G+ A + A +++ V I D A +++ Q Sbjct: 19 LKQKLQERENNALFLKGLSGSMDALIAAALSKSDKKSHVFILADKDEAYFFQNDLQQLLG 78 Query: 65 QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ--RGVLIVPVNTLMQRVCPHSF 122 V PY I R TL + Q L+ L ++V Sbjct: 79 LPVFVFPASYKKPYHYEQVENANILQRAETLNYIINNQDKPSYLVTYPLALSEKVINKRS 138 Query: 123 LHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRL 182 L + + + G++L+R+ + L S G+ D V E G+YA RG ++D+F +ELP+R+ Sbjct: 139 LVENTFIARIGEKLNREFMEEFLQSYGFERTDFVYEAGQYAIRGGIIDIFSYANELPFRI 198 Query: 183 DFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPE 242 + F EI+S+R F+ +SQ +++ + +++ P + K E Sbjct: 199 ELFGTEIESIRTFNPESQLSVDNIPVLSITPNVQTRLLKEERE----------------- 241 Query: 243 HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLL-VNTGDLETS-AERFQADTL 300 LF++ PA+T L + L T E + Sbjct: 242 ----------------------------SLFTFLPADTTLWIKDYALTTEIIEECFSKVE 273 Query: 301 ARFEN--RGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKL 358 ++F+ L P +L+ ++ + ++ + F+ Sbjct: 274 SQFDTILSSTGNSALLTSPDALFEDKYSFEKSIEAYSIIEFGP--HSYIPNATRIEFEAK 331 Query: 359 PDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEA 418 P + + L+ R + ++ + ES + + L +L + +R +E Sbjct: 332 PQPSFNKEFNLLLEDFRLRINQ-GYKIIIASESHQQIQRLHSILEELD----PYIRFEE- 385 Query: 419 SDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELH 478 MI GF+D RN+ + + +R R + R + + ++ L L Sbjct: 386 -------MIIPLREGFIDLQRNILCYTDHQIF-DRFHRYKTKERFSKSKSITLKELRTLQ 437 Query: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEE 538 G V H + G+ R+AG+ +E G T E + L + +D + + + +LH ISRY+G + Sbjct: 438 PGDFVAHADFGIARFAGLERIENNGHTQEAIRLVFRDDDLMVISIHALHKISRYSGKDGQ 497 Query: 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFP 598 + KLG W + K +V+D+A EL+ +YA+R A GFA+ D SF Sbjct: 498 PPVMSKLGSGDWENKKSKVKRQVKDIAKELIQLYAKRKAAPGFAYTPDSFLQVELESSFM 557 Query: 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 658 +E TPDQ++A V DM P MDRLVCGDVGFGKTE+A+RAAF AV + KQVAVLVPT Sbjct: 558 YEDTPDQSKATADVKKDMESPHPMDRLVCGDVGFGKTEIAVRAAFKAVCDGKQVAVLVPT 617 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 T+LA QHY FRDR + +P +E I+RF++A + + L V EGK +ILIGT +++ DV Sbjct: 618 TILAMQHYKTFRDRLSRFPCVVEYINRFKTAGQIKETLKRVKEGKTNILIGTQRVISKDV 677 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 +F+++GLLI+DEE +FGV+ KE+++ + N+D LTLTATPIPRTL+ ++ G RDLSIIAT Sbjct: 678 EFQNVGLLIIDEEQKFGVKVKEKLREFKINIDTLTLTATPIPRTLHFSLMGARDLSIIAT 737 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 PP R V T + +D +R+AI E+ RGGQV++++N V++I A + +LVP+AR+ Sbjct: 738 PPPNRQPVTTEIHVFDEAFIRDAISFELKRGGQVFFVHNRVKDIDGMAFLIKKLVPDARV 797 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 HGQM +LE VM F ++VLV T IIE+G+DIP ANTIII A FGL+ LHQ Sbjct: 798 TFAHGQMEGDKLEEVMLKFVEGEYDVLVSTNIIESGLDIPNANTIIINSAHMFGLSDLHQ 857 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 +RGRVGRS+ +A+ +LLTP A+T D++KRL + DLG GF +A DL+IRGAG + Sbjct: 858 MRGRVGRSNKKAFCYLLTPSVSALTGDSRKRLSVLEEFSDLGDGFKVAMRDLDIRGAGNM 917 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGR---------EPSLEDLTSQQTEVELRMP 1009 LG EQSG + +GF +Y ++L+ A+ LK + Q +E + Sbjct: 918 LGAEQSGFITDLGFDMYHKILDEAIQELKETEFADLFRDELDQQRLKNLVQDCVIETDLS 977 Query: 1010 SLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQ 1069 L+PD ++ +++ RLS Y I + K E EL L DRFG LP L + +LR Sbjct: 978 ILIPDTYVTNISERLSLYSTIDNIKNETELTSFIQGLTDRFGPLPKEVIDLTETIKLRWL 1037 Query: 1070 AQKLGIRKLEGNEKGGVIEFAEKNHVN------PAWLIGLLQKQPQHYRLDGPTRLKFIQ 1123 AQ+LG KL +F + ++ +Q + ++ + K + Sbjct: 1038 AQELGFEKLTIKNDVMRCQFVPSERTSYYTSDVFGSILTFVQTHSKKCKMKEVNK-KLLL 1096 Query: 1124 DLSERKTRIEWVRQFMRELEE 1144 +S+ K+ +E E+++ Sbjct: 1097 TISDIKS-VEMALSIFNEIQK 1116 >UniRef50_B5YFB2 Transcription-repair coupling factor n=2 Tax=Dictyoglomus RepID=B5YFB2_DICT6 Length = 1070 Score = 1000 bits (2586), Expect = 0.0, Method: Composition-based stats. Identities = 371/1103 (33%), Positives = 605/1103 (54%), Gaps = 85/1103 (7%) Query: 30 LVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIIS 89 L+ +R+ P++ + + ++ L + +++ + D + L + LPY+ + Sbjct: 50 LLFLYLKRYKRPILWVTNNEED-LSIWEDLQE--DLELSILPPYVHLPYERPLRSPQVQG 106 Query: 90 SRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAG 149 RL + + ++ + +L+ + P + L +K G+ ++R+ + L Sbjct: 107 KRLKAISDIIYNNSFSIVASLKSLIYPLIPKENIEKRILKIKVGEEITREKIEKFLAENL 166 Query: 150 YRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAI 209 Y+ QV + GEY+ RG +LD+FP E P R++FF DEI S+R F+++ +R+++ + + Sbjct: 167 YQRTPQVEKIGEYSIRGGILDIFPPLYENPIRIEFFGDEISSIRFFNLEDKRSIKTTKEV 226 Query: 210 NLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPL 269 L P E DK F E Sbjct: 227 ILTPISELIEDKNEESYFLKN-----------------------------------KEIK 251 Query: 270 PPLFSYFPANTLLVNTGDLETSA--ERFQADTLARFENRGVDPMRPLLPPQSLWLRVDEL 327 LFSY P +T+LV + A E++ LA FE R P+ L+L EL Sbjct: 252 TYLFSYLPKDTILVFENHKASLALLEKWTGKGLANFEKRRTKEN----LPEGLYLTDYEL 307 Query: 328 FSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVF 387 + + + + L + +L F + + + ++ FLE +F Sbjct: 308 QNFISKYQVLDL-------NSTEPDLVFTIYSPPSYRGTNEFFEKNIKSFLENGWEVHIF 360 Query: 388 SVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICES 447 S + R L L +YL GF+ + +I + Sbjct: 361 SEHQDIIRTRLKNL-------------------NVKYLTEEKVREGFLWENEKVLVITDY 401 Query: 448 DLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGE 507 ++ G++ R+ + + P ++L L G VVH+ +G+G + G+ L+ + E Sbjct: 402 EIFGKKRKRKPIRYEKGLKP----KDLYLLKDGDYVVHVNYGIGIFRGLKKLKIDDVEKE 457 Query: 508 YLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAE 567 ++ + YAN++ LYVP+ +HLI RY + E + +L W ++K E +++A E Sbjct: 458 FIYIEYANNSFLYVPLEEMHLIQRYVSSSPEPPQISRLESHQWEETKRKVKESAKEIAEE 517 Query: 568 LLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 LL +YAQR EGFAF D + SFP+ T DQ +A+ + DM M+R++ Sbjct: 518 LLKVYAQRELTEGFAFSPDSPLQEELEASFPYVETEDQIKALKEIKRDMESKKPMERVLI 577 Query: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 GDVGFGKTE+A+RA+F AV + KQVA+LVPTT+LA QH+ FR+R +PV +E++SR + Sbjct: 578 GDVGFGKTELALRASFKAVLDGKQVAILVPTTILAYQHWKVFRERLEVFPVNVEILSRLK 637 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 EQ +I+ + +G+IDI+IGTH++LQ DV+FKDLGL+IVDEEHRFGV KE K Sbjct: 638 PKSEQKRIIERIRKGEIDIIIGTHRILQKDVEFKDLGLIIVDEEHRFGVLQKESFKKKYP 697 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL 807 +VDIL L+ATPIPRTL+M +SG+R S++ TPP RL ++TFV EY+ +++E I RE+ Sbjct: 698 HVDILYLSATPIPRTLSMVLSGIRQFSVLETPPENRLPIQTFVVEYNPEIIQEGIRRELE 757 Query: 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 RGGQVYY+ ND+E ++K E L +LVPEA +I HG+M + EL VM++F+ + +VL+ Sbjct: 758 RGGQVYYVCNDIERLEKIKEELTKLVPEATYSIAHGKMDDEELTEVMSNFYDGKIDVLIA 817 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 TTIIE+GID+P ANT+ +E A+H GLAQL+QLRGR+GRS+ QAYA+ L K ++ D+ Sbjct: 818 TTIIESGIDVPNANTLFVENAEHMGLAQLYQLRGRIGRSYKQAYAYFLHAPLKKLSLDSI 877 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK 987 KRLEA+ LG+G LA DLEIRGAG++LG+EQ G + ++GF LY++LLE A++ LK Sbjct: 878 KRLEALKEFSSLGSGLRLALRDLEIRGAGKILGKEQHGHINSVGFYLYLQLLEEAINELK 937 Query: 988 AGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELI 1047 + S ++ + P+++P+ +I + R+ +Y+++A + N++++I+ EL Sbjct: 938 NSQGKSEKN--KVNCRITHPFPAIIPEYYISQSSDRIYYYQKLAHLEDINDIDKIRKELE 995 Query: 1048 DRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQ 1107 D +G +P+P L +++++ A+K+GI K+E +E + +++ I Sbjct: 996 DIYGPIPEPVENLFILSQIKFFAEKIGIEKIEISEDKTKLTYSKG--------IERTLNL 1047 Query: 1108 PQ-HYRLDGPTRLKFIQDLSERK 1129 P+ +Y+ L+F++D+S K Sbjct: 1048 PRGNYKKKIQFLLQFLKDISNIK 1070 >UniRef50_Q0B0S4 Transcription-repair coupling factor-superfamily II helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0S4_SYNWW Length = 1073 Score = 997 bits (2577), Expect = 0.0, Method: Composition-based stats. Identities = 379/1133 (33%), Positives = 610/1133 (53%), Gaps = 78/1133 (6%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL 70 ++ + LL L+G+A A +++EI ++ ++ + P+ + A L ++ F + + + Sbjct: 15 LQKRQNILLTGLSGSAKAFMLSEILKKQNRKLLCLLPEEEKAYDLARDLEAFIEPGRLFM 74 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQLPT-MQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 + + + LS + L Q ++I + + + S + +L+ Sbjct: 75 FLARDFYFAKENLSTLEVGRILSLQHCLDHPRQSAIIIATPGSFIYPLPAPSAMRESSLL 134 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 +++G+ + + +L GYR VD V GE+A RG ++D+FP+G + P R++FF + I Sbjct: 135 LQQGKEKEQREILKKLVGGGYRRVDTVSRQGEFAVRGGIIDIFPLGHKEPCRVEFFGELI 194 Query: 190 DSLRVFDVDSQRTLEEVE-AINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQV 248 +S+ FD++SQR L + E + +LPA E Sbjct: 195 ESIHRFDINSQRRLGKDEGQVKILPADE-------------------------------- 222 Query: 249 SKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGV 308 L+ E +FSY ++ + E + ++ R + Sbjct: 223 --------------LYGDELTCSIFSYLDESSSVFFDEPREFYKQFKRSVRRYRESLKEA 268 Query: 309 DPMRPLLPPQSLWLRVDELFSELKNWPRVQ--LKTEHLPTKAANANLGFQKLPDLAVQAQ 366 ++ L L + L E++ + +P A + + Q Sbjct: 269 CKDGKIIREIKL-LDSEYLKKEIEAHSVIYHAYFPSTIPQVAVTSLQHISQKEMEPFYRQ 327 Query: 367 QKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLM 426 + + + + V+ +++S RE + + L I G + Sbjct: 328 YETLFARINDW-QGKGLKVILAIKSRVAREQIQQDLLEQGIT-------------GISYL 373 Query: 427 IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 E GF + +AL+ ESD+ G++ + + + ++ L +L +G VVH Sbjct: 374 DKIVEKGFSSSTLQVALLSESDIWGKKTDPGSRKKHKHKGEERIL--LEDLKLGDYVVHE 431 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLG 546 +G+G + G++ +E GIT EY++L YA +LY+P+ L L+ +Y ++ L+KLG Sbjct: 432 SYGIGIFRGVSQVENSGITREYILLEYAGTDRLYLPLEKLDLLFKYTSSGDKEPRLNKLG 491 Query: 547 GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606 G AW R R+K A+ ++D+A +LL +YA R ++EG+AF D F D FPF TPDQ Sbjct: 492 GSAWERTRKKVAQSIQDLAEDLLQLYAHRESREGYAFSPDTPWQSQFEDEFPFRETPDQL 551 Query: 607 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 666 +AIN V DM MDRLVCGDVG+GKTEV +RAAF A+ + KQVA+LVPTT+LA+QH+ Sbjct: 552 KAINEVKKDMETRRPMDRLVCGDVGYGKTEVFLRAAFKAIMDGKQVAILVPTTVLAEQHF 611 Query: 667 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 F +RFA +P IE++SRFRS EQ +I+ ++ +G +DI+I TH+LL DVKFKDLGLL Sbjct: 612 QTFTERFAAYPAVIEVLSRFRSNSEQKRIVEDLQKGVVDIVIATHRLLSRDVKFKDLGLL 671 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 ++DEEHRFGV KE+IKA++ VD+++L+ATPIPR+L+MA++G+RDLS+I TPP R + Sbjct: 672 VIDEEHRFGVAQKEKIKALKELVDVISLSATPIPRSLHMALTGLRDLSVIETPPPERYPI 731 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 T+V EY+ ++ EA+++EI R GQV++++N +E+I + E+L EL P +IA+GHG+M+ Sbjct: 732 TTYVLEYNEEIIVEAVMKEIERQGQVFFVHNRIEDIYRVKEQLDELFPGIKIAVGHGRMK 791 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 E EL RVM DF + ++ + +CTTIIE+G+D+P NTII++ AD GLAQL+QLRGRVGRS Sbjct: 792 EDELSRVMMDFVNGKYQLFLCTTIIESGLDMPNVNTIIVDEADKMGLAQLYQLRGRVGRS 851 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 H AYA+L ++ +QKRL AI +LG+G +A DLEIRGAG +LG EQ G Sbjct: 852 HRLAYAYLTYRPDWVISEASQKRLNAIREFNELGSGMKIALRDLEIRGAGNILGAEQHGY 911 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026 ++ +GF LY LLE LK + ++++ + +P+ +IPD +++ Sbjct: 912 IQAVGFDLYCRLLEQETGRLKGEQVQENR----VDPQLDIDIDYYIPESYIPDSGSKMRI 967 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGV 1086 Y+R+ A ++ E+EEI+ E+ DRFG LP L IA LR A+ I+ L + Sbjct: 968 YRRLLLAGSQEEVEEIREEIRDRFGPLPQAVENFLQIAALRLLARDKEIKSLRRKGRQIE 1027 Query: 1087 IEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFM 1139 I+ L G L + + R L + + + + Q + Sbjct: 1028 IQ-------TLQRLPGNLSEHLRGIRRVNDHTLIIQKHENSSLPALAEILQML 1073 >UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bacterium Ellin514 RepID=B9XRJ1_9BACT Length = 1212 Score = 996 bits (2576), Expect = 0.0, Method: Composition-based stats. Identities = 407/1238 (32%), Positives = 610/1238 (49%), Gaps = 175/1238 (14%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAG-PVVLIAPDMQNALRLHDEISQFTD----- 64 ++ G L ++ +A L A + + P+VL++ ++ ++ + + Sbjct: 23 LENGGVLSLNGISASAQPFLAALLRQLLPELPIVLVSDSLKTQESFQQDVETWLNFEGSQ 82 Query: 65 ----------------QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGV--- 105 + WE +P++S PH D+IS RL TL L G Sbjct: 83 QKSKGKAPASQPSTISDRPLFYPAWEVMPHESKLPHADVISERLETLVALARQSPGKRGA 142 Query: 106 ---LIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEY 162 +I V L+Q+ P S L ++ +G R+ L L+ GY QV + GE Sbjct: 143 APHIIANVTALLQKTFPASVLKERTRMLNRGDRVEPLDLIEWLEEQGYEPEAQVTQKGEI 202 Query: 163 ATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKA 222 A RG +LD++PM S P RL+FF DE++SLR FD +Q + E++ + L P EF Sbjct: 203 ALRGGILDVYPMTSPWPVRLEFFGDELESLRYFDPITQISREQIATVTLPPGGEF----- 257 Query: 223 AIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLL 282 I +Q++ A L L Y P TL Sbjct: 258 --------------------GILKQLAARDQQA------------SLATLLDYLPTGTLF 285 Query: 283 V--NTGDLETSAERFQADT---------LARFENRGVDPMRPLLPPQSLWLRVDELFSEL 331 + +E E++ + F+ + L + + + ++ Sbjct: 286 ILSEPERIEEHTEQYSTQVPNEDPFHIPWSDFQELLSEKGMKSLQLSEIVMDGESEGMDV 345 Query: 332 KNWPRVQLKTEHLPTKAANANLGFQKLPDLAV-----------QAQQKAPLDALRKFLET 380 + + E ++ +L F L +AQ++ L ++ Sbjct: 346 LSESEAVAEDERPFGESTENSLPFSSLEAFRPLGARAPEPQIAEAQRREFFAQLHRWSRQ 405 Query: 381 FDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRN 440 +F ++G R+ E+ D G + +GA GF++ Sbjct: 406 GYDVHLF-CNNDGERQRFQEVWKDYGF----------GEDFGLKMHLGALGRGFLNEEAK 454 Query: 441 LALICESDLLGERVARRRQDSRR---TINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMT 497 + ++ ++++ G +R + + L + EL G VVHL+HG+GRY G+ Sbjct: 455 VVVVTDAEIFGRYKVQRPRRLKSPHAQATRSALDIDFTELEEGDYVVHLQHGIGRYQGLK 514 Query: 498 TLEA-------------GGITGEYLMLTYANDA------KLYVPVSSLHLISRYAGGAEE 538 L E L++ YA KLYVPV+ HL+S+Y G + Sbjct: 515 VLPVTLGRKGVDPNATPADSGQECLVIEYAASDPQQPAPKLYVPVTEAHLVSKYVGAGKA 574 Query: 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFP 598 L+ +GG W++A+ +A VRDVA+ELL I A R ++ G++FK D + F +F Sbjct: 575 RPQLNTIGGTRWAKAKAQAERAVRDVASELLAIQAARESQPGYSFKADTPWQREFESAFL 634 Query: 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 658 +E T DQ +AIN DM +P MDRL+CGDVGFGKTEVA+RAAF AV KQVA+LVPT Sbjct: 635 YEETRDQMRAINETKGDMERPKPMDRLICGDVGFGKTEVAIRAAFKAVMEGKQVAILVPT 694 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 T+LAQQHY+ F++R A++P+R+E++SRFRS K + ++++E+ G +DI+IGTH+L+QSD+ Sbjct: 695 TVLAQQHYNTFKERVADYPMRVELLSRFRSPKNRKRVISELPAGAVDIVIGTHRLIQSDI 754 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 FKDLGL+I+DEE RFGV HKE+ K +R VD+LTL+ATPIPRTL +A++G RD+S I T Sbjct: 755 NFKDLGLVIIDEEQRFGVLHKEKFKQIRKLVDVLTLSATPIPRTLYLALTGARDMSTIET 814 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 PP RL V+T V +YD ++REAI RE+ RGGQVY+L+N V I A++L LVP ARI Sbjct: 815 PPQDRLPVETIVAQYDERLIREAIQRELNRGGQVYFLHNRVGTIDAMAQKLRTLVPHARI 874 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 +GHGQM+ +LE VM F + +VL+ TTIIE+G+DIP ANT+II+RAD FGL+ L+Q Sbjct: 875 VVGHGQMKPDDLEEVMTAFINGEADVLLSTTIIESGLDIPNANTMIIDRADRFGLSDLYQ 934 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 LRGRVGR HQAYA+LL P + DA+KR+ A+ LG+GF +A DLEIRGAG + Sbjct: 935 LRGRVGRYKHQAYAYLLLPRHAGLLADARKRISALKQYSTLGSGFKIAMRDLEIRGAGNM 994 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGR---------------------------- 990 LG EQSG + +GF LY +LL+ +V ALK + Sbjct: 995 LGPEQSGQITAVGFDLYCQLLKQSVAALKGEKVKPRVEVQVRFDFLALNPGEESAAPERG 1054 Query: 991 -----------EPSLEDLTSQQTEVELR---------------MPSLLPDDFIPDVNTRL 1024 EP + T VE + +P ++ + R+ Sbjct: 1055 AKAEAPKRRKAEPEIIIPREVLTYVEYDEVAEQKTEQPMQVEKGSAFIPLSYVSEAKQRI 1114 Query: 1025 SFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKG 1084 Y+++A A + LE + EL DRFG LP LL + L+ A + I +E + Sbjct: 1115 DIYRKLAQATDKAALENLAKELRDRFGTLPPAMELLLQVGELKILAGEKNITIIEVKDDK 1174 Query: 1085 GVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFI 1122 ++ + L + + RL +L Sbjct: 1175 LMLTRNNDYIMLGGKFPRLTKGDAKG-RLKEIKKLLLA 1211 >UniRef50_C8P217 Transcription-repair-coupling factor (ATP-dependent helicase MFD) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P217_ERYRH Length = 1138 Score = 995 bits (2574), Expect = 0.0, Method: Composition-based stats. Identities = 364/1140 (31%), Positives = 603/1140 (52%), Gaps = 30/1140 (2%) Query: 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWE 74 + + L+ A LV ++ P+ +I + Q A L++EI + V+ E Sbjct: 21 KSVFAHLSVVQEALLVLGSSKISKKPLFIIKENEQQASNLYNEIKHLDENANVVYYNHEE 80 Query: 75 TLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 +L ++ + + ++R+ L+++ + I ++++ P L + +K G Sbjct: 81 SLRVEAIVQSEIMKANRIDALFKIINGDFDICITHAIASVRKLSPAEVLKASIINIKTGD 140 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 194 L +L+ GY V V + YA RG + D+F + E P R++FFD E+DSLR Sbjct: 141 EWEPLQLARELERLGYTRVKYVEKPFTYAIRGGVCDVFSIQMEQPLRIEFFDVEVDSLRY 200 Query: 195 FDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLP 254 FD+++QR+L VE + A + + I+ + E + + I++ K L Sbjct: 201 FDIENQRSLSRVEEATIAFATDILLKENDIQEISNALTSKIEGIENNDLIHEMEQKRELL 260 Query: 255 AGIEY---WQPLF-FSEPLPPLFSYFPA-NTLLVNTGDLETSAERFQADTLARFENRGVD 309 ++ PL F ++ Y NT + +E + ++ D+ E + Sbjct: 261 QMNQFDVTLYPLLSFWSNYATIYDYLKDANTYMSPIEAIERTLKQNALDSHTFIEEQY-- 318 Query: 310 PMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKA 369 M ++ ++ + + ++ + + +TE + V + Sbjct: 319 EMNQMIFVSDIFESFERIKAKHTHREIFEYQTE--------GEVFIPWHSANIVSESIEQ 370 Query: 370 PLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGA 429 + L+K E V+ +++ + + + +L + + + D+ + G Y+ G Sbjct: 371 TMKWLKK--EAITQKVIITLDEDTMEDFIKIMLQQ---GVEYQVLTDKPTSNGIYIDYGH 425 Query: 430 AEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHG 489 GF+ N + ++L + R D++ + L++L VVH ++G Sbjct: 426 ITSGFILEDLNTVVYTANELYKYKKKMFRYDNK--FLKAESLSQLSDLDTLDYVVHRQYG 483 Query: 490 VGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDA 549 +G+Y G+TT E GI +++ + Y + +L+VP+ +L+ ++ + L KLG Sbjct: 484 IGKYMGITTKEIEGIHKDFMRILYRDGDELFVPLEQFNLVRKFMSREAASVRLSKLGTST 543 Query: 550 WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAI 609 W + +++ + V DVA +L+ +Y+ R GFAF D E + F D+F +E T DQ AI Sbjct: 544 WQKNKERIKQDVADVADKLVTLYSTRMDASGFAFSPDTEYQKQFEDAFEYELTQDQKTAI 603 Query: 610 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 669 + + DM + + MDRL+CGDVGFGKTEVA+RAAF A +HKQV L PTT+L+QQH Sbjct: 604 DEIKRDMERDVPMDRLLCGDVGFGKTEVAIRAAFKAFVDHKQVVFLCPTTILSQQHARTL 663 Query: 670 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 729 ++R +++PV IE+++RF S KE+ +I+ V +GK+DIL+GTH++L DVKFKDLGLLI+D Sbjct: 664 KERLSDFPVTIEVLNRFVSDKEKNEIIQRVKDGKVDILVGTHRVLSRDVKFKDLGLLIID 723 Query: 730 EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF 789 EE RFGV HKERIK + +VD+L+L+ATPIPRTL M++ G+R LS + PP+ RL V T+ Sbjct: 724 EEQRFGVEHKERIKEFKVSVDVLSLSATPIPRTLQMSLIGLRSLSQLNMPPSNRLPVMTY 783 Query: 790 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERE 849 + E + + + I +E+ R GQV+YL+N+VE I A +A V A +A+ HGQM E Sbjct: 784 IIEKNQKTINDIISKELNRDGQVFYLFNNVEQIYSVASVIANHVEAANVAVVHGQMERHE 843 Query: 850 LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 909 +E VM F + NVLVCTTIIETGIDIP ANTII++ A FGL+QL+Q++GRVGRS Sbjct: 844 IEDVMIRFISKEINVLVCTTIIETGIDIPNANTIIVDNAHRFGLSQLYQIKGRVGRSDRL 903 Query: 910 AYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMET 969 AYA+ + P+ + +T AQKRL+AI LG+G+ +A DL IRGAGELLG QSG ++T Sbjct: 904 AYAYFVVPNKRGLTELAQKRLQAIKEFTQLGSGYKIAMRDLTIRGAGELLGGNQSGFIDT 963 Query: 970 IGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKR 1029 +G LY++LL+ A+ + +E+ L++ LP+DF D +L Y++ Sbjct: 964 VGIDLYVQLLKEAIAKRQGKEVIDVEEQERF----NLKVDGYLPEDFTSDDGEKLDLYQQ 1019 Query: 1030 IASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEF 1089 I ++ +EL+ + DR+G LP+ + LL+ RL I+ + + F Sbjct: 1020 INQIQSIDELKHFNEMIDDRYGKLPNSVKMLLEKTRLELFLNDKRIKSFKERVNKVELVF 1079 Query: 1090 AEK--NHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAI 1147 E+ + V+ L L+ ++ ++ + I + E + + L+E I Sbjct: 1080 TEEYSSQVDGVHLFELISEKSSEIKIKYLNQ-TIIITMPMYTEWAEDLVYILENLKEQQI 1138 >UniRef50_B8IZ90 Transcription-repair coupling factor n=3 Tax=Desulfovibrio RepID=B8IZ90_DESDA Length = 1179 Score = 995 bits (2573), Expect = 0.0, Method: Composition-based stats. Identities = 409/1170 (34%), Positives = 620/1170 (52%), Gaps = 44/1170 (3%) Query: 1 MPEQY--------RYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNA 52 +PE+Y ++ + + E ++ E +G A +A A VVL+A D + Sbjct: 14 VPEKYAVWNIFMSNFSTVLASKEGQVYIERSGMATRCRLAAEAFTQGRTVVLVARDREEY 73 Query: 53 LRLHDEISQFTDQMVM-----NLADWE----TLPYDSFSPHQDIISSRLSTLYQLPTMQR 103 ++ FT ++ + + W TLP S + S+RL+ LY L + Sbjct: 74 NSARALLTLFTPELSLADKSVSEPQWNSPCLTLPPLSQWQDRASWSARLAALYGLAQGRP 133 Query: 104 GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYA 163 ++ V +L+ R P F L ++KG + + L Q GY V V GE A Sbjct: 134 RCIVCSVESLLLRHIPLDFFAARNLDLRKGSDYAPELLLDQAVEWGYERVPMVTRPGEMA 193 Query: 164 TRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAA 223 RG +LD+FP G P RL+FF D +D +RVFD +SQR+L+ + + LLPA D + Sbjct: 194 RRGDILDIFPTGHVKPVRLEFFGDTLDEMRVFDAESQRSLQGCDELVLLPASPLALDAKS 253 Query: 224 IELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF-SYFPANTLL 282 + R + F R E+ K G+ + P LF + P ++L Sbjct: 254 LAAARERCDRMFAEGRISENECYSFKKSLDGGGLGLLPGSVLASP--SLFEDWLPKDSLW 311 Query: 283 VNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTE 342 + G+ SA+ + D + R PL P SL LR + + RV + Sbjct: 312 LLPGE-SDSADALR-DGRLNLKERLEAADAPLPQPASLALRKSSQPAPWNTFQRVYAEPL 369 Query: 343 HLPTKAANANLGFQKLPDL----AVQAQQKAPLDALRKFLETFD---GPVVFSVESEGRR 395 + + +L + L + Q P L L+ + +V S S R Sbjct: 370 VMGVEERGLDLPERPLHSFIDLFPLPGAQDRPWQHLAAGLKEWKSSRRQIVLSFSSGRSR 429 Query: 396 EALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVA 455 +L + I P ++ RG + ++ G ++ ++ E D+L + Sbjct: 430 AKFLKLAEQDGIVPALRYAPEQ---RGLFALVSPFRSGAELVWDDVLVLGE-DILYPKAE 485 Query: 456 RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAN 515 + + S R + + +L G +VH ++G+GR+AG+ L+ ++L++ Y+ Sbjct: 486 KTPRVSSRVFK---GLDSFDDLKPGDLLVHRDYGIGRFAGLHHLDLNAAANDFLLVEYSG 542 Query: 516 DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR 575 KLYVP L LI R+ G L +LGG AW ++KA + + +AA+L+++YA R Sbjct: 543 RDKLYVPADRLGLIQRFKGTEGVEPALDRLGGAAWVAGKEKARKAIEKIAADLVEMYAYR 602 Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 +GF + E Y F +F FE TPDQA+AI VL DM +P MDRLVCGDVGFGKT Sbjct: 603 KVTKGFRYDPPGELYHEFEATFGFEETPDQAKAIQDVLDDMDRPRPMDRLVCGDVGFGKT 662 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 EVA+RAAF A +QVA+L PTT+LA+QHY FR R A +PV + ++SRF Q ++ Sbjct: 663 EVALRAAFRAASEGRQVALLCPTTVLAEQHYQTFRARLAGFPVNVGLLSRFVPRPRQKEV 722 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 L A G+IDILIGTH++L SDVK +L LL++DEE RFGVRHKE++KA++ NVD+LTLT Sbjct: 723 LKAAAAGQIDILIGTHRILSSDVKLPNLTLLVLDEEQRFGVRHKEKLKALKKNVDVLTLT 782 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYL 815 ATPIPRTL ++MSG+R+LSII T P R V + V D V+R+ + REI R GQV+++ Sbjct: 783 ATPIPRTLQLSMSGIRELSIIETAPQDRKPVASAVLRKDDNVLRKVLEREIEREGQVFWV 842 Query: 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 YN V+ +++ AE + LVP+AR+ + HGQM E ELE M+ F H +VLVCT+I+E+G+ Sbjct: 843 YNRVQGLERVAEYVRGLVPDARVGMAHGQMSEAELEDTMHKFWHGELDVLVCTSIVESGL 902 Query: 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 D P ANT+++++A FGL QL+QLRGRVGRS QAYA+ + P + +T A++RL I Sbjct: 903 DFPRANTLVVDQAQMFGLGQLYQLRGRVGRSDRQAYAFFVVPDAERLTAVAEERLRIILD 962 Query: 936 LEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLE 995 ++ LGAGF +A DL +RGAG +LGE QSG M +G LY+E+LE AV LK Sbjct: 963 MDYLGAGFQVAMEDLRLRGAGNILGEVQSGHMCRVGLDLYLEMLEEAVGRLKG-----TP 1017 Query: 996 DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPD 1055 + +TE+ L +P+ +P +I D RL YK + SA+ EEI + + DRFG P+ Sbjct: 1018 ESLVSETELTLGLPAHIPASYIDDGRERLRCYKALTSAQGGAAREEIALSIRDRFGPFPE 1077 Query: 1056 PARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAE-KNHVNPAWLIGLLQKQPQHYRLD 1114 L + +Q +L ++K + + + + + + + V P ++ L P R+ Sbjct: 1078 ELANFLAVLDFKQFLTELQVQKADVHREHVRLTWPDGQTAVQPERIVALAASMPG-ARMQ 1136 Query: 1115 GPTRLKFIQDLSER-KTRIEWVRQFMRELE 1143 P L ++ +RQ + ++ Sbjct: 1137 PPAGLTLPLAKDMPLAGGLDRLRQALEDIR 1166 >UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cyanobacteria RepID=Q3AK28_SYNSC Length = 1192 Score = 995 bits (2572), Expect = 0.0, Method: Composition-based stats. Identities = 373/1101 (33%), Positives = 579/1101 (52%), Gaps = 34/1101 (3%) Query: 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLAD 72 ++ L+ + A + + +A+R P++++ P ++ A R + Sbjct: 25 RAQRLLMRGAGRCSRALVASALAQRRGAPLLVVVPTLEEAGRWTALLELMGWSQAGLYPT 84 Query: 73 WETLPYDSFSPHQDIISSRLSTLYQLPTMQRGV---LIVPVNTLMQRVCPHSFLHGHALV 129 E PY+ F P +I +L L L + ++ L + P L Sbjct: 85 SEGSPYEPFDPTSEITWGQLQVLSDLLGDPDALSWAIVATERCLQPHLPPPDVLKTKTRT 144 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 ++KG ++ +AL L GY V+ + + G ++ RG ++D+FP+ SELP RL+FF +E+ Sbjct: 145 LRKGDQVDLEALGETLAQLGYERVNTIEQEGSWSRRGDIVDIFPVSSELPVRLEFFGEEL 204 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP---EHIYQ 246 D LR FD SQR+L+ V+A+ L P P Q R+T +P + Sbjct: 205 DKLREFDPASQRSLDPVDALRLTPTGFGPL-------IADQLRETMPDGLEPLLGAEGTE 257 Query: 247 QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLE--TSAERFQADTLAR-- 302 Q+ G P G+ L + +P L Y P T +V + +++ + Sbjct: 258 QLLNGGTPEGMRRLMGLAWGQP-ASLLDYLPDTTTVVIDERRQGLAHGQQWLSHVEEHHH 316 Query: 303 ---FENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLP 359 E + R L P L ++ ++ + + + E L + P Sbjct: 317 DMAAEAGLDEGDRDRLWPAVLHREIEAAYALTEVFHGFDM-AELLEVDQHPNSFDLASRP 375 Query: 360 DLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGE-----LLARIKIAPQRIMR 414 A Q + ++ F + S + L E I R Sbjct: 376 VAAYPNQFGKLGELIKGFQTERTAVWLVSAQPSRAVALLEEHDCISRFVPNAGDSNAISR 435 Query: 415 LDEASDRGRYLMIGAAE-HGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRN 473 L E + + G AE G +AL+ + + G++ RR + + Sbjct: 436 LIEQNTPVALKVRGTAELEGLQLPAWRIALVTDREFFGQQSLSSSGYVRRRRKAASRTVD 495 Query: 474 LAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYA 533 ++ G VVH HG+GR+ M L G +YL++ YA+ L V L + RY Sbjct: 496 PNKMRPGDFVVHRNHGIGRFKAMEKLAMSGDIRDYLVVQYADG-ILRVAADQLGSLGRYR 554 Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 +E L+++GG AW++A+++A + VR VA +L+ +YA+R GFAF D Sbjct: 555 ATSETPPQLNRMGGTAWNKAKERAKKAVRKVALDLVKLYAERQQAAGFAFPTDGPWQVEM 614 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 +SFP++ TPDQ +A V DM + MDRLVCGDVGFGKTEVA+RA F A+ KQVA Sbjct: 615 EESFPYDPTPDQLKATADVKRDMERQEPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVA 674 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 +L PTT+LAQQH+ +RFA +P+++ +++RFR+A E+ IL + +G ID ++GTH+L Sbjct: 675 MLAPTTVLAQQHWRTLSERFAPYPIKVALLNRFRTASERKSILDGLKQGTIDAVVGTHQL 734 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 L F++LGLL+VDEE RFGV KE+IK +R +VD+LTL+ATPIPRTL M++SG+R++ Sbjct: 735 LSKGASFQELGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVREM 794 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 S+I TPP R +KT + D +R AI +E+ RGGQV+Y+ VE I++ A L E++ Sbjct: 795 SLITTPPPLRRPIKTHLASLDPEAMRSAIRQELDRGGQVFYVVPRVEGIEEVAAGLREML 854 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 P ++ + HGQM E ELE M F+ +V++CTTI+E+G+DIP NTI+IE A FGL Sbjct: 855 PGLKLLVAHGQMAEGELENAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGL 914 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 AQL+QLRGRVGRS QA+AWL P +++ A++RL AI LG+G+ LA D+EIR Sbjct: 915 AQLYQLRGRVGRSGIQAHAWLFYPGNASLSDTARQRLRAIQEFAQLGSGYQLAMRDMEIR 974 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLP 1013 G G LLG +QSG METIGF LYME+L+ ++ ++ PS+ED T+V+L + + +P Sbjct: 975 GVGNLLGVQQSGQMETIGFDLYMEMLQESLAEIQGQDIPSVED-----TQVDLPVTAFVP 1029 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKL 1073 D+I D + +++ Y+ A T L E+ DR+G LP +LL + L+ A++ Sbjct: 1030 ADWITDPDEKIAAYRAAADCLTAEALVELAAGWADRYGALPAAVVSLLQLMELKLLAKRC 1089 Query: 1074 GIRKLEGNEKGGVIEFAEKNH 1094 G +++ + V+E + Sbjct: 1090 GFSRIKPEKPNIVLETPMEEP 1110 >UniRef50_UPI00016C571B transcription-repair coupling factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C571B Length = 1121 Score = 994 bits (2569), Expect = 0.0, Method: Composition-based stats. Identities = 376/1149 (32%), Positives = 575/1149 (50%), Gaps = 113/1149 (9%) Query: 10 PVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN 69 + AG + G++ A A +A G ++++ P ++++ F Sbjct: 33 ALAAGRSGTVDGAWGSSAALAAAALAAEVRGTLLVVVPHPVEVEPWAEDMASFLGTRPAV 92 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQL------PTMQRGVLIVPVNTLMQRVCPHSFL 123 WE+ P S D +++ L Q V++ ++ + Q V + L Sbjct: 93 FEMWESWPVSSNRGKLDPVTTSRLRLLQQLQRAGGAEGPPKVVVCGISAVCQPVPERADL 152 Query: 124 HGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLD 183 + G + L L + GY+ VD V GE++ RG + D+FP S P+RL+ Sbjct: 153 AARGRTLAAGDIVEPSELAEWLVANGYKRVDAVEFPGEFSRRGGICDIFPPDSPDPFRLE 212 Query: 184 FFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEH 243 FF DE++ LR F SQR+LE+ + + LLP Sbjct: 213 FFGDEVEGLRTFAAGSQRSLEKKDRVTLLPT----------------------------- 243 Query: 244 IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT--LLVNTGDLETSAERFQADTLA 301 Q + G PA L Y P ++ +L+ DL A+ F Sbjct: 244 --DQGTAGARPAK-------------GHLADYLPPDSWVVLIEPRDLREQAKHFHERVST 288 Query: 302 RFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDL 361 ++ F+ L P V L P+ A+ +L + + Sbjct: 289 T----------------DGLHTTEQAFAGLMKLPSVVLSALPRPSVEASVHLRVESVNRF 332 Query: 362 AVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR 421 + D L V+ + +SE L E+L K+A +R Sbjct: 333 SGSVH--RVRDELDSIAHNATARVLVACQSEAEVHRLTEVLKAGKLAESHRLR------- 383 Query: 422 GRYLMIGAAEHGFVDTVRNLALICESDLLGE---RVARRRQDSRRTINPDTLIRNLAELH 478 L+ G GF + ++ ++ + + Q I + +L+ Sbjct: 384 ---LVTGHVRSGFRLVESGVIVLGSHEIFHKDLLPPGTKAQAKSSRTIESRAIDSFLDLN 440 Query: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGE--------------------YLMLTYANDAK 518 G VVH+ HG+ R+ GM L+ + +L+L + + Sbjct: 441 DGDYVVHVAHGIARFRGMRMLDKASGVQDTGEDSLFPDERPANPAAEEEHLVLEFRDGIF 500 Query: 519 LYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAK 578 LYVP + + L+ +Y GG++ L K GG AWSR ++K +E VRD+AAE+++I A R A Sbjct: 501 LYVPATRIDLVQKYVGGSQAEPQLSKPGGAAWSRKKEKVSEAVRDMAAEMINIQALRQAV 560 Query: 579 EGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVA 638 G F D + + F +FP++ TPDQ AI V D+ + MDRL+CGDVG+GKTEVA Sbjct: 561 PGHQFPPDSDWQKEFEAAFPYQETPDQLSAIAEVKGDLEKTKPMDRLICGDVGYGKTEVA 620 Query: 639 MRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAE 698 +RAAF AVD+ KQVAVLVPTT+LA+QH+ F RFA +P ++ ++RF+S +Q + L + Sbjct: 621 IRAAFKAVDSGKQVAVLVPTTVLAEQHFRTFTQRFAEYPFMVDAVNRFKSGAKQKETLKK 680 Query: 699 VAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATP 758 +A G++D+++GTH+LL DV FKDLGL+++DEE RFGV HKER+K +RA VD+LT+TATP Sbjct: 681 LAAGEVDVIVGTHRLLSKDVTFKDLGLVVIDEEQRFGVEHKERLKHLRATVDVLTMTATP 740 Query: 759 IPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYND 818 IPRTL+ ++ G+R++S + TPPA R V+T + +D +R AILRE+ RGGQVY+++N Sbjct: 741 IPRTLHASLLGIREISNLETPPADRQPVETHITRWDDKQLRNAILREMNRGGQVYFVHNR 800 Query: 819 VENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 V++I + A ++ LVPEA++ +GHGQM +LE+ M F + ++LV TTIIE+G+DIP Sbjct: 801 VQDIYEVATKIEILVPEAKVTVGHGQMDAHDLEKAMVRFVRKEADILVATTIIESGLDIP 860 Query: 879 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLED 938 ANTI I+ AD +GLA LHQLRGRVGRS H+AYA+ + K + AQ+RL+AI + Sbjct: 861 NANTIFIDEADTYGLADLHQLRGRVGRSKHRAYAYFIVNPLKLLNPTAQRRLKAIEEFTE 920 Query: 939 LGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLT 998 LGAGF +A DLEIRGAG +LG EQSG + IG+ LY +LLENAV ALK Sbjct: 921 LGAGFKIAMRDLEIRGAGNILGGEQSGHIAAIGYELYCQLLENAVRALK-----HQPPKV 975 Query: 999 SQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPAR 1058 + V+L PS LP D++ R+ Y+R+A + +L + + EL DR+G P+P Sbjct: 976 AVDVVVDLPWPSYLPRDYVQGQKLRIEVYRRLARLRDPAKLADFRTELRDRYGEPPEPVE 1035 Query: 1059 TLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTR 1118 LL +R K + + + + V + + + ++ Sbjct: 1036 WLLRTTEVRLLCVKWLVASVHRHGQDIVFTYR-----SAERAKQFVAASRGRLKIVDDKS 1090 Query: 1119 LKFIQDLSE 1127 + + Sbjct: 1091 VYLRLRSGD 1099 >UniRef50_C7PET5 Transcription-repair coupling factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PET5_CHIPD Length = 1126 Score = 994 bits (2569), Expect = 0.0, Method: Composition-based stats. Identities = 371/1121 (33%), Positives = 578/1121 (51%), Gaps = 85/1121 (7%) Query: 19 LGELTGAACATLVAEIAE-RHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNLADWET- 75 L LTG+A + A E ++ + I D + A H+++ T + D Sbjct: 33 LTGLTGSATTFVAAGAWEMANSVNHLFILNDREEAAYFHNDLESITQGLDIFYFPDSFKK 92 Query: 76 --LPYDSFSPHQDIISSRLSTLYQLPTM--QRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 + S H + R L + + VL+ L ++V G+ + +K Sbjct: 93 AGFFNEINSSHSML---RTEALMKFSGNAVHKKVLVTYPEALWEKVAASVAYTGNMVQLK 149 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 G L D L +L S G+ D V E G+YA RG +LD++ G+E PYR++ F ++IDS Sbjct: 150 VGDVLKVDDLLNKLVSWGFEFTDFVYEPGQYALRGGILDIYSFGNEKPYRIELFGEDIDS 209 Query: 192 LRVFDVDSQRTLEEVEAIN---LLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQV 248 +R+FD +SQ + ++ + + +KA++ F + +T +DP ++ Sbjct: 210 IRLFDPESQLSERKLNQVTLIANMDTQGLKHEKASLLGFLPE--NTIVWMKDPGYV---- 263 Query: 249 SKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGV 308 D+ E L + V Sbjct: 264 -------------------------------------QDVILQLEERLDAFLQTGQQVKV 286 Query: 309 DPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN--LGFQKLPDLAVQAQ 366 + ++ +++ + +L + + A L F+ Q Sbjct: 287 GDDDTIALSEADFVKAHAMMQDLLRRHCIVFGSRQWWEDTNRAFIPLNFETQEQPVFNRQ 346 Query: 367 QKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLM 426 + + L + +F+ E+ + E L + +K +D + + Sbjct: 347 FEMLIKDLDAHNKNKYTLFIFA-ENARQLERLRSIFEDLK------------ADFTFFPI 393 Query: 427 IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 HGF+D L + + +R + + N ++ L EL G V H+ Sbjct: 394 PSPVSHGFIDHSLKLVCYTDHQIF-QRYHKYKVKQAYNKNKAITMKTLRELQAGDFVTHI 452 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLG 546 +HGVG Y+G+ +E GG E + + Y N+ LYV ++SLH IS+Y+G ++KLG Sbjct: 453 DHGVGVYSGLQKIEVGGKMQEAIRIIYKNNDLLYVNINSLHKISKYSGKEGVEPRVNKLG 512 Query: 547 GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606 DAW + ++KA +V+D+A +L+ +YA R A+ GF D SF +E TPDQ+ Sbjct: 513 SDAWDKLKEKAKTQVKDIAKDLIQLYAARKAQTGFPHSPDTYLQTELEASFLYEDTPDQS 572 Query: 607 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 666 +A V DM P MDRLVCGDVGFGKTE+A+RAAF ++ + KQ AVLVPTT+LA QHY Sbjct: 573 KATADVKRDMQSPAPMDRLVCGDVGFGKTEIAVRAAFKSIVDGKQAAVLVPTTILAFQHY 632 Query: 667 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 F DR ++P ++ ++RF+SAKE+ + L +AEGKIDI+IGTH LL DVKFKDLG++ Sbjct: 633 KTFSDRLKDFPCTVDYLNRFKSAKEKKETLQRLAEGKIDIIIGTHALLSKDVKFKDLGVM 692 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 +VDEE +FGV KE++K ++ NVD LTLTATPIPRTL ++ G RDLS+I TPP R + Sbjct: 693 VVDEEQKFGVAAKEKLKQLKINVDTLTLTATPIPRTLQFSLMGARDLSVINTPPPNRQPI 752 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 +T V +D ++R+AI E RGGQVY++YN V+ + + + + L P+ IA HGQM Sbjct: 753 ETEVHVFDHDLIRDAIYYETERGGQVYFVYNRVKGLGEMSSLIKGLCPDLSIATAHGQME 812 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 +LE V+ DF ++++VLVCT I+E+G+DIP ANTIII A HFGL+ LHQLRGRVGRS Sbjct: 813 GHQLEEVILDFIDRKYDVLVCTNIVESGVDIPNANTIIINNAHHFGLSDLHQLRGRVGRS 872 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 + +A+ +LL P + D++KRL+ + +LG+GF +A DL+IRGAG LLG EQSG Sbjct: 873 NKKAFCYLLAPPISTLPGDSRKRLQTLEQHSELGSGFQIAMRDLDIRGAGNLLGGEQSGF 932 Query: 967 METIGFSLYMELLENAVDALKAGR-------EPSLEDLTSQQTEVELRMPSLLPDDFIPD 1019 M IGF +Y ++L+ A+ LK + + ++ + L+PD ++ Sbjct: 933 MAEIGFDMYQKILDEAIRELKQNEFRDLFKDQLEEKKDFVSDCTIDTDLEILIPDSYVES 992 Query: 1020 VNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLE 1079 + RL+ Y+ + + E++L+ +VE+ DRFG +P+P + L + R R A KLG K+ Sbjct: 993 IQERLNLYQELDNITLESKLQAFEVEMQDRFGPVPEPVKDLFCMIRCRWMAIKLGFEKMM 1052 Query: 1080 GNEKGGVIEFAEKN----HVNPAW--LIGLLQKQPQHYRLD 1114 E F +P + ++ LQ + + +L Sbjct: 1053 LKEGKLRCYFINNPDSPYFESPTFNHILTYLQTRVNNAKLR 1093 >UniRef50_C9LLX5 Transcription-repair coupling factor n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLX5_9FIRM Length = 1135 Score = 990 bits (2560), Expect = 0.0, Method: Composition-based stats. Identities = 356/1133 (31%), Positives = 579/1133 (51%), Gaps = 75/1133 (6%) Query: 18 LLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF-TDQMVMNLADWETL 76 ++ + A L A +A + P+++I P ++ R ++ F TD + E Sbjct: 63 MISGAGDSQKALLTA-MAAKEDSPLIIIVPSQKDVFRWEMDLRFFATDLHLYYFPLVEET 121 Query: 77 PYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 + + + R+ L L +R +I V Q++ S + + + + G+ + Sbjct: 122 GFKVTFSGTERLRDRMRGLASLLDGRRSAVIATVVEAAQKIISPSGILENLMTIHMGEVI 181 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 R+ L +L GY VDQV G ++ RG ++D+F + P+R++FFDDE+D +RVF+ Sbjct: 182 EREILVGKLVKLGYERVDQVERCGHFSVRGDIVDIFAINESHPFRVEFFDDEVDGIRVFN 241 Query: 197 VDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAG 256 D+QR+++ + I++LPA V +G Sbjct: 242 EDTQRSIDIRDDISILPA---------------------------------VIRGECS-- 266 Query: 257 IEYWQPLFFSEPLPPLFSYFPANTLLVN-TGDLETSAERFQADTLARFENRGVDPMRPLL 315 + SY + + + E +++ + E Sbjct: 267 -------------SSILSYLNSGRIFYDEPQRCEEELKKYFHEEAENKEKAFDWAGLVKT 313 Query: 316 PPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALR 375 R E+ K + T + +Q+ L + + Sbjct: 314 GRSGRKYRNREILFSFLKRDADLFKVKETATWKGRTMVNYQRQISLFFNDLTRLLKE--- 370 Query: 376 KFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFV 435 V R+ L + L+ + + L G GF Sbjct: 371 ------GWSAVILTPRRSERKELEQYLSDYHVPVS-----QKVQKGKVTLYNGVLSGGFE 419 Query: 436 DTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAG 495 +A I D+ G++ ARR + IR ++L G VV HG+G+Y G Sbjct: 420 LPDAKMAFITAGDIFGKQKARRY----KAGGKGKQIRYFSDLEPGDYVVQRVHGIGKYIG 475 Query: 496 MTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQ 555 + T+E G+ +Y+ + YA KLY+P+ + + +Y G + LH++GG W + R+ Sbjct: 476 VKTIELEGVHRDYITIQYAGADKLYLPMEQIASLEKYIGPEGQTPALHRMGGVQWDKVRR 535 Query: 556 KAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSD 615 KA + + ++A +LL +YA R EG +F D + + F D+FPF T DQ +AI AV Sbjct: 536 KAKKSIEELAEKLLAVYADREITEGISFLPDTAEQREFEDTFPFVETDDQLEAIQAVKRG 595 Query: 616 MCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 M +P MD L+CGDVGFGKTEVAMRA F V + Q VL PTT+L+ QHY F+ R + Sbjct: 596 MERPQPMDMLICGDVGFGKTEVAMRAVFKCVMSGFQAMVLCPTTVLSSQHYKTFKGRMDS 655 Query: 676 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFG 735 + + I +++RF + +E+ +IL+++A G++D++IGTH +L ++ + LGLL+VDEE RFG Sbjct: 656 FGINIALLNRFTTMREKKEILSKLASGEMDVVIGTHAVLSKKIECRHLGLLVVDEEQRFG 715 Query: 736 VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDS 795 V KE+ K+ +DILTL+ATPIPRTL+M+++G+RD+ + PPA R A++T+V EYD Sbjct: 716 VMQKEKWKSWSKKLDILTLSATPIPRTLHMSLTGVRDMVAMTQPPANRHAIQTYVTEYDD 775 Query: 796 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP-EARIAIGHGQMRERELERVM 854 +V++AIL E RGGQ Y++YN +E+I+ L +++P + IA+ +GQM R LE++M Sbjct: 776 TIVKDAILHEKARGGQTYFIYNRIESIRAMEAHLRDILPSDVTIAVAYGQMDGRTLEKIM 835 Query: 855 NDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL 914 DF ++++VL+CTTIIE G+D P ANT+++ AD GL+Q++Q+RGRVGRS A AW Sbjct: 836 VDFFEKKYDVLLCTTIIENGVDQPNANTMLVYDADKLGLSQIYQMRGRVGRSEKIARAWF 895 Query: 915 LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSL 974 K ++ A+KRL I +LG+GF +A DLEIRGAG LLG EQ G++ +GF+ Sbjct: 896 FYRQGKVLSEAAEKRLNTIREFTELGSGFKIAMRDLEIRGAGNLLGAEQHGNIAGVGFAT 955 Query: 975 YMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK 1034 Y +LE+ V L+A RE T VELR + L +D+I + ++ Y+R+A A Sbjct: 956 YCNMLEDTVSRLRAERENKPVPKKMPDTTVELRQDAYLDEDYISNEGQKMEIYRRLAVAA 1015 Query: 1035 TENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH 1094 +E EL ++ E+IDRFG PA L ++R+R QA++LGI + + +I +A++ Sbjct: 1016 SEEELTDLIDEVIDRFGSPSRPAERLFLVSRIRVQARRLGIGSILDEGQTLLIVWADEEP 1075 Query: 1095 V---NPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 + N L H+ P R++ + + +W+ F+ E+ + Sbjct: 1076 MHRWNMNRLPH-SYMSKLHFLPGSPARVRI-KKTDIQGNTAKWMSDFIEEITK 1126 >UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax=Actinobacteridae RepID=C7MC76_BRAFD Length = 1211 Score = 990 bits (2560), Expect = 0.0, Method: Composition-based stats. Identities = 409/1168 (35%), Positives = 603/1168 (51%), Gaps = 61/1168 (5%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHA--GPVVLIAPDMQNALRLHDEISQFTD-QMVM 68 ++GE + TG LVA++A R P+V++ + L +S + ++ Sbjct: 42 ESGEGGSIVAATG-LFPFLVADLARRATAEQPLVIVTATTRATEDLRAALSALVGTEHLV 100 Query: 69 NLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQR----GVLIVPVNTLMQRVCPHSFLH 124 L WETLP++ SP D ++ RLSTL ++ + V+++PV +L+Q + Sbjct: 101 ELPAWETLPHERLSPRADTVAKRLSTLRRIAHPESEDPAHVVLMPVRSLLQPI-AKGLGE 159 Query: 125 GHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDF 184 + G + L L A Y VD V + GE+A RG +LD+FP P R+D Sbjct: 160 LRPVRAAVGDTYPLEDLERDLTGAAYARVDMVEKRGEFAVRGGILDVFPPTEPHPVRVDL 219 Query: 185 FDDEIDSLRVFDVDSQRTLEEVEA-INLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEH 243 F DEID +R F V QR+L+ ++ P E A E R++ + V+ Sbjct: 220 FGDEIDDVRYFSVADQRSLDPAPRGLDAPPCREILLTPAVRERARARAEELPGVRD---- 275 Query: 244 IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT--LLVNTGDLETSAERFQADTLA 301 + +++ G G+E P+ + + + PA L+++ A+ A T Sbjct: 276 LLLRIADGIAADGMESLSPVLV-DGMEQVADVLPAGARFLVIDPEKARARADELVATTDE 334 Query: 302 RFENRGVDPMRPLLPPQSLW------LRVDELFSELKNWPRVQLKTEHLPTKAANANLGF 355 P + L + + P L L T Sbjct: 335 FLAAAWSSAAAGGGLPIDVGAASFVPLSEAKGHAREGGRPWFTLAAFGLDTDVDLTTSST 394 Query: 356 QKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRL 415 L+ V+ ++ G + E L + L Sbjct: 395 THPGYSGKPGDAAKDLER----RRAEGWSVLSTMVGPGGARHVAENLRAEGLPAVFSAEL 450 Query: 416 DEASDRGR-YLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNL 474 D G + +G G VD L L E DL G+ ARR ++ + ++ L Sbjct: 451 DAPVAPGEAVVTVGPFAEGLVDEDLQLILAAERDLTGKSGARRGEERKMPSRRRNVVDPL 510 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAGGI----TGEYLMLTYAN------DAKLYVPVS 524 +L G VVH HGVGR+ MT G T EYL++ YA +LYVP Sbjct: 511 -QLRPGDHVVHAHHGVGRFVEMTRRAVGSGAKRTTREYLVIEYAPSKKGQPGDRLYVPSD 569 Query: 525 SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 L +++Y GG E ++++GG W++ + KA + +R++A EL+ +Y+ R + G AF Sbjct: 570 QLDQVTKYVGGEE--PSVNRMGGADWAKTKSKARKAIREIADELVRLYSARQSAPGHAFG 627 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 D + DSF F TPDQ I+ V +DM + + MDRL+ GDVG+GKTE+A+RAAF Sbjct: 628 PDTPWQRELEDSFEFVETPDQLVTIDDVKADMEKSVPMDRLILGDVGYGKTEIAVRAAFK 687 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 AV + KQVAVL PTTLLAQQH D F +R+ +PV + +SRF++ + + + +G + Sbjct: 688 AVQDGKQVAVLAPTTLLAQQHLDTFAERYTGFPVTVRGLSRFQNPADSEATVEGLRDGSV 747 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 DI+IGTH+LL +V+FKDLGLLIVDEE RFGV HKE +KA+R NVD+L+++ATPIPRTL Sbjct: 748 DIVIGTHRLLTGNVRFKDLGLLIVDEEQRFGVEHKETLKALRTNVDVLSMSATPIPRTLE 807 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 MA++G+R+LSI+ATPP R V T+V + V AI RE+LR GQV+Y++N VE+I + Sbjct: 808 MAVTGIRELSILATPPEERHPVLTYVGAQEDKQVTAAIRRELLREGQVFYIHNRVEDIDR 867 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 A L ELVP+AR+ + HG+M E +LERV+ DF + F+VLVCTTI+ETG+DI ANT+I Sbjct: 868 VAAHLRELVPDARVQVAHGKMNEHQLERVLIDFWERDFDVLVCTTIVETGLDISNANTLI 927 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 +E AD FGL+QLHQLRGRVGRS +AYA+ L K +T A RL +A+ DLGAG Sbjct: 928 VENADRFGLSQLHQLRGRVGRSSERAYAYFLYNATKPLTELAHDRLTTLATNTDLGAGMQ 987 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 +A DLEIRGAG LLG EQSG + +GF LY+ ++ AV A + ++ V Sbjct: 988 VAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVAAFRGEGRA-----PEKEIRV 1042 Query: 1005 ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA 1064 EL + + +P D+I RL Y ++++ + +E+ +I+ EL DR+G P P LLD+A Sbjct: 1043 ELPLDAHVPHDYIGSERLRLEAYSKLSAVREVSEIAQIRAELTDRYGTPPAPVEVLLDVA 1102 Query: 1065 RLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVN----------PAWLIGLLQKQPQHYRLD 1114 R R A+ GI +++ K +I FA + P ++ +Q R Sbjct: 1103 RFRIDARTAGIDEVQAQGK--MIRFAHLEVPDSAAMRMKRLYPGTVLKPAIRQVLVPR-- 1158 Query: 1115 GPTRLKFIQDLSERKTRIEWVRQFMREL 1142 P + +EW R +R L Sbjct: 1159 -PMTSRLGGTELRDHELLEWSRDVLRTL 1185 >UniRef50_C9RNX3 Transcription-repair coupling factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RNX3_FIBSS Length = 1132 Score = 988 bits (2554), Expect = 0.0, Method: Composition-based stats. Identities = 371/1094 (33%), Positives = 586/1094 (53%), Gaps = 62/1094 (5%) Query: 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLAD 72 E + + + +VA + +++IA D ++A + + + V Sbjct: 24 NEAIHVNGASVPLASMMVANRFLKSPQNILVIAKDYRSAEVWVENLESMVGEEFVRFFPS 83 Query: 73 WETLPYDSFSPHQDIISSRLSTLYQLPTMQRG-VLIVPVNTLMQRVCPHSFLHGHALVMK 131 PY+ P + ++ RL + ++ V++ P++ + ++ + ++ Sbjct: 84 LGLKPYEIKVPFEGVLEERLKFFRDVSHTEKPFVVVCPLDAFLMKLPEPGEIMRQVRTLR 143 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 G +L +LR G+ V GE++ RG ++D+ + P R++F+ DEI+S Sbjct: 144 VGDQLEPSSLRPWFLDHGFVEQPMVSGVGEFSIRGCIVDVNCLLYPHPIRIEFYGDEIES 203 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKG 251 +R FD+ SQR+LE++ I P EF ++ + ++ S Sbjct: 204 IRAFDIFSQRSLEQMTHIEFFPMGEFTVPESVMAG-------------------EECSVE 244 Query: 252 TLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDL--ETSAERFQADTLARFENRGVD 309 +L +W + L Y P +L+ L ET+++ + A A E R D Sbjct: 245 SL-----WWHRPHHQRLVASLLDYMPRASLVFEELSLLSETASKMYGAFRGAYDEARVTD 299 Query: 310 PMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKA 369 + P +W ++ EL R L + N + + D Sbjct: 300 AG--VAAPADIWFKIGELSRLFVG--RASLDMTRVKVDDGNWHEMHMRPQDFTSNGT--- 352 Query: 370 PLDALRKFLETF---DGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLM 426 DA+ K +E F G V ++ G L E+ + I Sbjct: 353 --DAVAKEIEEFYDKGGRVYVMAQTLGGVNRLREIFDGLPIED---------------YF 395 Query: 427 IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 IG GF N+A + ES +L + R+ + L+ + L+ G V H Sbjct: 396 IGNLSEGFWLEDDNVAFLTESRILNRHANKARKHKIAGSVTNALM--VESLNRGDLVAHE 453 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLG 546 +HG+GRY G+ +E G + +L Y +L PVS L I R + L +LG Sbjct: 454 DHGIGRYLGLVRVEVNGGMVDCALLEYDGGDRLKFPVSDLQKIERLDRPEDIETKLDRLG 513 Query: 547 GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606 W +++ +KV +A +L+++YA+R EGF F D + F DSF ++ TPDQ Sbjct: 514 SKTWENIKKRVKQKVIQIARDLVELYAKRELVEGFGFPPDGNMQKEFEDSFEYDPTPDQL 573 Query: 607 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 666 +A + DM MDRL+CGDVGFGKTEVAMRAAF V ++KQVA+LVPTT+LA QHY Sbjct: 574 RATADIKRDMESHRPMDRLICGDVGFGKTEVAMRAAFKCVSSNKQVAILVPTTILAAQHY 633 Query: 667 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 +NF +RFA +PV+I +++R++SAKE+ +I E+A G ++I+IGTH LL + +FKDLGLL Sbjct: 634 ENFCERFAAYPVKIALMNRYKSAKEKKEIFKEIAAGTVNIVIGTHALLSNKSEFKDLGLL 693 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 I+DEE +FGV+ KE+++ +R VD L+++ATPIPR+L+++M+G+RD+S+I TPP RL V Sbjct: 694 IIDEEQKFGVKQKEKLRQLRLAVDTLSMSATPIPRSLHLSMTGVRDISLINTPPINRLPV 753 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 +T + + D V++ AIL E+ RGGQV+ + + V+ I K E + + PEA++A+ HGQM Sbjct: 754 ETKLMQRDDEVLKNAILDELARGGQVFVVNDRVQTIYKLTEDIEAMAPEAKVAVAHGQME 813 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 + ELERVM+ F ++F++LV T+IIE+G+D+P ANTIII A HFG++QL+Q+RGRVGRS Sbjct: 814 DHELERVMDAFLSRKFDILVSTSIIESGLDVPNANTIIIMNAHHFGISQLYQMRGRVGRS 873 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 A A+L+ P ++ ++ +RL+A+ DLG+G+ LA DLEIRGAG LLG+EQ G Sbjct: 874 SVLAKAFLVIPQRGEISQESMRRLKALEQFTDLGSGYQLAMRDLEIRGAGNLLGQEQHGF 933 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026 + +GF Y+ L+ AV+ L+ G Q VE+ + + LP+D++ D TR+S Sbjct: 934 IAEVGFETYVRLVREAVEMLRGGALEK-----PIQPRVEIGVDAYLPEDYVEDGLTRISL 988 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGV 1086 Y+RIA T+ +++ I+ EL DRFG +P PA+ LL + L A +L I+ L + V Sbjct: 989 YQRIARITTQADVQNIESELQDRFGPVPTPAKMLLLVTELGLLAGRLRIQGLALRKGVIV 1048 Query: 1087 IEFAEKNHVNPAWL 1100 FAE +P L Sbjct: 1049 ATFAETPSPDPRVL 1062 >UniRef50_D1R5W0 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5W0_9CHLA Length = 1103 Score = 986 bits (2550), Expect = 0.0, Method: Composition-based stats. Identities = 383/1125 (34%), Positives = 590/1125 (52%), Gaps = 95/1125 (8%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 P+ K G+ L+ EL A A + + + V+++ Q RL+ + Sbjct: 9 PKLLELQEAFKQGDPVLIEELWNAPKALIASLALQVTGKHVLILTGGSQEESRLYHDFPF 68 Query: 62 FTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQL-PTMQRGVLIVPVNTLMQRVCPH 120 F+ ++ WETLP ++ +P D + +R L Q+ T Q ++I + +Q + P Sbjct: 69 FSSAPLLEFPAWETLPSENIAPSPDTVGARYKALRQVSATFQPHIIISGLQACLQSLIPP 128 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 L +KKG+ D L +L+ GYR + GE+A RG ++D+FP+ S P+ Sbjct: 129 QNFDSLYLALKKGETFPFDTLIQRLNEMGYRRSAVAADKGEFAIRGGIIDIFPVASPDPF 188 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R++F+ D+I+S+R+FD QR+++ VE I + PA E Sbjct: 189 RIEFWGDDIESIRIFDPIGQRSIKTVEHIEITPAQEM----------------------- 225 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL 300 + QQ S L + Y T+++ L Sbjct: 226 --ELIQQ------------------SSKLSTILDYLGPQTIVIFDDLLA----------- 254 Query: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPT------KAANANLG 354 E+R + P + ++ LF ++ ++ + + K+ Sbjct: 255 --LEDRYSSLLHICGSPTRSFQSIENLFEQIAPLQQIYWSRQPIEELTEVKLKSPKGKSF 312 Query: 355 FQKLPDLAVQAQQKAPLDAL-RKFLETFDGPV--VFSVESEGRREALGELLARIKIAP-- 409 + + + A D + +++L F V + E + + ++L + P Sbjct: 313 YSESAPMHTLAFSMFNKDLMAKRWLSPFIPLVDYLLPFRDEEQEVSGNDILENLAHIPKE 372 Query: 410 -----------------QRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGE 452 Q+I + G G V L +I +++ Sbjct: 373 AHLHFLCASELEENTLKQKIAQKSIPLPTQTVYQNGYLSSGLVLAQEQLLVIPFTEV-SH 431 Query: 453 RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMT-TLEAGGITGEYLML 511 R RRQ R T + T + L G VVHL HG+GR+ G+ L G+ E+ ++ Sbjct: 432 RYKLRRQKLRSTYH--TPPSDSYHLVPGDMVVHLNHGIGRFLGLEKKLNHNGVLSEFFLI 489 Query: 512 TYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDI 571 YA + KLYVP++ HL+++Y G +E+ +H LG W + +++ E + A +LL + Sbjct: 490 EYAENGKLYVPLNQAHLVTKYIGSSEDLPSMHTLGSARWKKTKERTQEAIVGYAKDLLQL 549 Query: 572 YAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVG 631 YA R+ K G + D Q F + FP+E T DQ AI ++ DM +MDRL+CGDVG Sbjct: 550 YAHRSLKAGLIYPSDSIDMQDFEEDFPYEETEDQLNAIASIKEDMQSTKSMDRLICGDVG 609 Query: 632 FGKTEVAMRAAFLAVDNH-KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAK 690 +GKTEVAMRAAF AV + KQVA+LVPTT+LA QHY+NF +R +N+PVRI ++SRFR+ K Sbjct: 610 YGKTEVAMRAAFKAVMDGHKQVALLVPTTVLAMQHYENFIERMSNFPVRIGVLSRFRTPK 669 Query: 691 EQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVD 750 E + L +VA+G IDILIGTH+L+ DV F DLGL+I+DEEHRFGV+ KE +K ++ VD Sbjct: 670 EIRETLEQVAKGSIDILIGTHRLISKDVVFHDLGLIIIDEEHRFGVKAKEHLKKIKMGVD 729 Query: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGG 810 +TL+ATPIPRTL M++ G RD+S+I TPP RL + T + E +V + A+LRE+ R G Sbjct: 730 CITLSATPIPRTLYMSLVGARDMSVINTPPQDRLPITTIISEPGDLVFKNALLRELSRDG 789 Query: 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 870 Q Y ++N VE I A ++ EL+P+AR+ +GHGQM E++ V + F ++LV TTI Sbjct: 790 QAYVIHNRVETIFGVASKIKELLPQARVVVGHGQMSADEIDSVFHAFKSGAADILVATTI 849 Query: 871 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRL 930 IE+GIDIP ANTI+I RAD FGLA L+QLRGRVGR + +AYA+ L P+ K++ A+KRL Sbjct: 850 IESGIDIPNANTILINRADQFGLADLYQLRGRVGRWNRRAYAYFLVPNLKSLPQLARKRL 909 Query: 931 EAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGR 990 A+A G G LA HDLEIRGAG +LG EQSG + IGF Y +LL + L+ Sbjct: 910 HALAEACGYGGGMKLAMHDLEIRGAGNILGTEQSGHVSAIGFHFYCKLLRRTIQTLQGEL 969 Query: 991 EPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRF 1050 + +T++E + LP+D++ +V+ R+ Y+R+ A +++E I+ EL DRF Sbjct: 970 SAGM-----VETKLEFHYDACLPEDYVNEVSLRMEIYQRLGEAIALSDVELIEQELKDRF 1024 Query: 1051 GLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHV 1095 G L + L+ + R+R A + G L+ ++ IE+ + + Sbjct: 1025 GPLVIQVQWLMALTRIRVFASQRGYTTLKFDKLAISIEWKKGKQI 1069 >UniRef50_C0GM56 Transcription-repair coupling factor n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GM56_9DELT Length = 1144 Score = 986 bits (2550), Expect = 0.0, Method: Composition-based stats. Identities = 364/1135 (32%), Positives = 602/1135 (53%), Gaps = 42/1135 (3%) Query: 24 GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSP 83 G A +AE R VL+ P + + F+ + WE+ + SP Sbjct: 27 GPATQIYLAEYLRRQGHDAVLVLPPNSDVKQYMQLAEIFSRTSMEKDKFWESSWFFLPSP 86 Query: 84 --HQDIISSRLST-LYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDA 140 R+ ++ L + ++ ++++ + P + L++ G+ + Sbjct: 87 GHSSRPAWGRIWASMFGLMQQKGKAAVLTADSMLNYLPPPDVVRDVFLLLMTGEETNPGD 146 Query: 141 LRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ 200 + +L GY V V GE + RG +LD++ G P RL+FF + ++S+R F+ SQ Sbjct: 147 ILDKLVEWGYVRVFMVTSPGEVSQRGDILDIYAPGYPHPLRLEFFGNHLESIRTFEPVSQ 206 Query: 201 RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYW 260 R++ ++E +LP P + ++ R + D + + +Q + L ++ Sbjct: 207 RSIRQLEECLILPVSPSPMEDHLVKQARDKA-DYLKSTGEISRELRQRLEFKLEEKDPFY 265 Query: 261 QPLFFSEPLPPLFSYFPANT--LLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQ 318 F + + P + LV+T L TS E + E G P+ Sbjct: 266 PAGLFYSSPGEISEFLPEDAHFFLVDTARLRTSLEEEEWKLKQWAEAEGW--------PE 317 Query: 319 SLWLRVD-ELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLA----VQAQQKAPLDA 373 L+ + + + N +V + + K+ +LG +++ + + P A Sbjct: 318 KLFFQPEVRARTMWHNRRQVVFERLVMGQKSRGVDLGEKEINSFSDIFWKPQDNRRPWPA 377 Query: 374 LRKFLETFDGP---VVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAA 430 + L+ + V+ + + R+ +++ + I + + RG Y ++ Sbjct: 378 FLQALKEWKRTANQVILNFNTAKSRDKFLDVIQKEDI---ELKTSFDPEVRGLYAVVAGT 434 Query: 431 EHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 G + ++ ++ E D+L +R + R I + ++ G +VH ++G+ Sbjct: 435 GTGMHMSWNHIYILGE-DVLQPGTRQRTGPTGRFKG----IARVEDIEPGDMLVHRDYGL 489 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW 550 GR+ G+ + +YL+L YAND KLYVPV L+ +Y G + L KLGG W Sbjct: 490 GRFGGLERISTDTQASDYLVLYYANDDKLYVPVDRFSLVQKYKGPDGADPALDKLGGANW 549 Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 S+ + + + ++ +A +L+D+YAQR +G+++ E YQ F ++F F+ TPDQ QAI Sbjct: 550 SKTKNRVRKAIQKIAKDLVDMYAQRKVVKGYSYSPPEELYQEFANTFGFQETPDQEQAIR 609 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 V+ DM MDRLVCGDVGFGKTEVAMRAAF AV + KQVA+L PTT+LA+QHY NF Sbjct: 610 EVMQDMESDEPMDRLVCGDVGFGKTEVAMRAAFRAVQDGKQVALLCPTTVLAEQHYQNFV 669 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 R ++ + + M+SRF Q IL +G++DILIGTH++L DV L L+I+DE Sbjct: 670 QRMQDFAINVRMLSRFVPRNRQKIILEGARKGEVDILIGTHRILSQDVILPRLSLMILDE 729 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 E RFGVRHKE++K R N+D+LTLTATPIPRTL +++SG+R LS+I TPP R V++ + Sbjct: 730 EQRFGVRHKEKLKQYRQNIDVLTLTATPIPRTLQLSVSGIRTLSVIETPPLDRKPVESSI 789 Query: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 E D +R A+ RE+ R GQV+++YN V+ ++ E + +L+PEAR+ + HGQM ER L Sbjct: 790 IERDRDFLRHALQRELDRQGQVFWVYNRVQGLESVMEYVQDLMPEARVDMAHGQMPERIL 849 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 E M+ F H ++LVCT IIE+G+D P ANT+I+++A FGL QL+QLRGRVGRS QA Sbjct: 850 EENMHRFWHHEIDILVCTAIIESGLDFPRANTLIVDQAHMFGLGQLYQLRGRVGRSQEQA 909 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 YA+ + P + + ++KR++ I ++ LGAGF +A DL +RGAG +LGE QSG + + Sbjct: 910 YAYFIVPSVRELGEKSRKRMQIILDMDYLGAGFQVAMEDLRLRGAGNILGEVQSGQIGKV 969 Query: 971 GFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI 1030 G L++E+++ V LK DL E+ + + +P+D+IPD RL +Y+ + Sbjct: 970 GLDLFLEMMQEEVGKLKGDTSYGSRDL-----EINIGFSAYIPEDYIPDAAERLKYYRML 1024 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFA 1090 + + + +++ EL D FG LP+ +++ +++ + LG +K + E IE++ Sbjct: 1025 SGGAQQQDFDQLSQELQDLFGKLPEELHNFINVLKIKHALKALGPQKADFMENRLSIEWS 1084 Query: 1091 EKN-HVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 + +NP L+ ++K RL P++L+ + R V F+ EL++ Sbjct: 1085 AETGELNPEKLVQWIEKNSSIARLVPPSKLEIRLN------RDSNVLNFLYELQD 1133 >UniRef50_Q2S6G5 Transcription-repair coupling factor n=2 Tax=Rhodothermaceae RepID=Q2S6G5_SALRD Length = 1142 Score = 985 bits (2547), Expect = 0.0, Method: Composition-based stats. Identities = 385/1154 (33%), Positives = 597/1154 (51%), Gaps = 91/1154 (7%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF---TDQMVMNLADWET 75 + G+ A L+ + P+ ++ PD A L ++ Q D+ ++ + + Sbjct: 37 VNGAAGSLPAFLLYHLHREPGAPLCVLTPDEDAAAYLQSDLEQLVGEPDEAILRVPATQK 96 Query: 76 LPYDSFS-PHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 PYD + R L +L G+L+ V + + V P + L ++ G+ Sbjct: 97 TPYDPDQIADSTPLIERADALQRLAEGFEGILVTSVPAVGELVPPPQAVQRETLTVENGE 156 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 194 ++ +AL +L + V+ V E GE+A RG +LD+FP P R+DFF DE+D LR Sbjct: 157 EIALEALADRLLEQDFSPVEFVEEPGEFARRGGILDVFPYAGTYPIRIDFFGDEVDGLRE 216 Query: 195 FDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLP 254 FD +QR++ + L+P E ++ ++G++ Sbjct: 217 FDPQTQRSVSRLTTARLVPNLE----------------------------REEAARGSI- 247 Query: 255 AGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGD----------LETSAERFQADTLARFE 304 LF Y P +L + E +A ++ E Sbjct: 248 ----------------ALFQYLPDEAVLATLDEAQVREGAQAQFEEAAAAYEERRAELAE 291 Query: 305 NRGVD-PMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAV 363 N V+ L PP +L D++ + L PR+Q T + D Sbjct: 292 NDEVEQTPEDLTPPDDRFLTGDQMAAALTRHPRLQFGTFSQSSTNGTPTDTLDLEADPQP 351 Query: 364 QAQQKAPLDALRKFLETFDGPVV---FSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 +D +RK L+ + +S G+ L +LL E Sbjct: 352 SFNSD--MDLVRKRLQKNGDRDLDTFILCDSHGQSSRLRDLLE------------SEIDH 397 Query: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 L++ + GF LA+ + + R R +R++ L G Sbjct: 398 GWARLVVESLHEGFEWPGAGLAVFTDHQIFN-RYHRPSTKQWEGHADGMNLRDIKNLTRG 456 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 VVH++HG+GR+ GM + E + L +A++ LYV V +LH +++Y G Sbjct: 457 DFVVHVDHGIGRFDGMKKITVRDNQQEAVRLNFADNDVLYVNVHALHKLNKYTGKEGHQP 516 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 L KLG + W + +Q+ ++V++VA +L+ +YA+R A +G+AF D + SF FE Sbjct: 517 TLTKLGSEQWEKKKQRTKDQVKEVARDLIKLYAKRKASDGYAFSSDTTWQREMEASFEFE 576 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 TPDQA+A AV DM +P+ MDRLVCGDVGFGKTEVA+RAAF AV + KQVA+LVPTT+ Sbjct: 577 DTPDQAEATKAVKRDMEEPVPMDRLVCGDVGFGKTEVAVRAAFKAVQDGKQVAMLVPTTI 636 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LAQQH+D F +R +PV +E++SRFRS EQ+++L ++ +G++DILIGTH++ D+ F Sbjct: 637 LAQQHHDTFSERMERFPVNVEVLSRFRSRTEQSKVLEKLEKGQVDILIGTHRITSDDITF 696 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 DLGLL+VDEE RFGV+ KE+++ MR +D LTLTATPIPRTL ++ G RDLS+I TPP Sbjct: 697 DDLGLLVVDEEQRFGVKTKEKLRKMREAIDTLTLTATPIPRTLQFSLLGARDLSLIETPP 756 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 R + T + +D V+R+AI+ E RGGQV++++N V+ I + AE + +VP R+ + Sbjct: 757 PNRQPINTEIHTFDEDVIRDAIVYETSRGGQVFFIHNRVKTIHEVAEMVRAMVPNVRVGV 816 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA-DHFGLAQLHQL 899 GHGQM ELE VM DF +++ +VLV T+IIE G+DI ANT+II A +HFGL++LHQL Sbjct: 817 GHGQMSASELEDVMLDFVNEKLDVLVSTSIIENGLDISNANTMIINHAGEHFGLSELHQL 876 Query: 900 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959 RGRVGRS +A+ LL P +T DA++RL+A+ DLG+GF +A DL+IRGAG LL Sbjct: 877 RGRVGRSQRKAFCHLLVPSVHGLTDDARERLKAVEQFSDLGSGFDIAMRDLDIRGAGSLL 936 Query: 960 GEEQSGSMETIGFSLYMELLENAVDALKAGREPSLED----LTSQQTEVELRMPSLLPDD 1015 G EQSG +E +G+ Y ++L+ AV L+ + D +T V++ + +P+ Sbjct: 937 GAEQSGFIEDVGYETYHKILDQAVKELREEEFDDVFDGEAVPPGPETSVDVEEDAYIPES 996 Query: 1016 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 ++ D RL+ Y+RI+ A E L ++ E+ DRFG P+P + LL ARLR ++L + Sbjct: 997 YLRDNTERLNLYRRISDAPDETTLVDLLDEMEDRFGDAPEPVQNLLTGARLRLLGERLRM 1056 Query: 1076 RKLEGNEKGGVIEFAEKNHVNPAW-------LIGLLQKQPQHYRLDGPTRLKFIQDLSER 1128 K+ + + +P + L+ L + Y + ++ + + Sbjct: 1057 PKVVYKNERLFLYL-PSEDADPYFYDEVFHPLLEKLTLLDREYVMKDDVEGGLMRAIVQD 1115 Query: 1129 KTRIEWVRQFMREL 1142 ++ Q L Sbjct: 1116 VNTLDEALQVTESL 1129 >UniRef50_B6AN99 Transcription-repair coupling factor n=2 Tax=Leptospirillum sp. Group II RepID=B6AN99_9BACT Length = 1154 Score = 984 bits (2545), Expect = 0.0, Method: Composition-based stats. Identities = 369/1154 (31%), Positives = 594/1154 (51%), Gaps = 50/1154 (4%) Query: 6 RYTLPVKAGEQRLLGELTGAACATL-VAEIAERHAGPVVLIAPDMQNALRLHDEISQF-- 62 + + K+ L + A + L + +IA +++ + + F Sbjct: 17 PFFVAQKSHRPLNLMGIEEDARSLLPFLSHDLLSDKTLWIIAENIEKSHNRMSSLLAFQS 76 Query: 63 ---TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCP 119 ++ + L + E LPY+ SP I + R+ L L + V++ ++++ P Sbjct: 77 FFGSNLSICFLPEEEVLPYEPESPPDFIRAERIHALNLLAQGKVDVVVTTWPAVVRKTLP 136 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 L + G+ + R AL L G+ V QV GE+A RGA+LDL+ + P Sbjct: 137 PRLLSEVTWTLSAGEFIERTALADSLVRLGFLRVLQVSAPGEFAVRGAILDLYSPAHQDP 196 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR 239 RL++ DD + S+R FD+++Q++L ++ + +LP E+ ++ Sbjct: 197 VRLEWDDDILASIRSFDINNQKSLAKLSRVEILPGSEWIPPTGNVK------------NG 244 Query: 240 DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADT 299 + +L G+E + P + + PL Y LL+ + ++ + Sbjct: 245 ALSDWLKDNPVTSLVPGVERFIPSIYEDAQSPL-DYGRKPVLLIEEPSIYRQKKKEWEER 303 Query: 300 LARFENRGVDPMRPLLP-PQSLWLRVDELFSELKN--WPRVQLKTEHLPTKAANANLGFQ 356 + D + LLP P+ +L + +L +P + L F Sbjct: 304 IREGWEALTDSDKVLLPSPEKAFLFEEAESPQLIEKLYPTIYLS-------------DFS 350 Query: 357 KLPDLAVQAQQKAPLDALRKFLETFDG-----PVVFSVESEGRREALGELLARIKIAPQR 411 DL + ++ L + E V+ + G+R+ ELL I Sbjct: 351 DQEDLPFSSPVESLLQIEDSWAEGLSHLIGQTKVLSVFRTRGQRDRFQELLTNQGIPFFP 410 Query: 412 IMRLDEASDRG------RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTI 465 L + +R + ++G E GF N+ ++ E+ L + R Sbjct: 411 ASGLQDIEEREPLNRSVVWTILGDVEKGFYIPSDNILVLSENFLF-RKRPEPRIHRAFAT 469 Query: 466 NPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSS 525 ++ L+ G+PVVHL+HG+G Y G+ + G I GE+ ++ Y + KLYVPV Sbjct: 470 ATSIYRKDRPPLNEGEPVVHLQHGIGLYRGLKEIMVGSIPGEFFVVEYRDLEKLYVPVDH 529 Query: 526 LHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKH 585 L+ Y G L ++GG W+R RQK +++ ++ +L+D+YA+R G +F Sbjct: 530 ADLLQPYRGPEGSTPTLDRIGGQTWNRTRQKVRKEIEKISQDLVDLYARRKTVSGHSFSS 589 Query: 586 DREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA 645 D + F +SFP++ TPDQ A AV DM P MDRL+ GDVGFGKTE+AMRAAF A Sbjct: 590 DLLLVREFENSFPYDLTPDQEDAWRAVCEDMEAPTPMDRLILGDVGFGKTEIAMRAAFKA 649 Query: 646 VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID 705 V + QVA+LVPTTLLA+QHY++F DRF+ +PVRI ISR S E +++ G+ID Sbjct: 650 VADGYQVALLVPTTLLAKQHYESFLDRFSGFPVRICHISRMVSQAEIRATRKKLSLGEID 709 Query: 706 ILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNM 765 ILIGT L+ + F++LGLLI+DEE RFGV KE++K+ +VD+LTL+ATPIPRTL M Sbjct: 710 ILIGTTALISKETSFRNLGLLIIDEEQRFGVGQKEKLKSRYTSVDVLTLSATPIPRTLQM 769 Query: 766 AMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKA 825 ++SG+R +S I TPP R ++T + +D + EAI RE+ R GQV++++N V+ I + Sbjct: 770 SLSGLRGISFIMTPPPGRKPIRTAILTFDRHRIHEAIDRELARDGQVFFIHNRVQTISRM 829 Query: 826 AERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 885 LA+L PE I + HGQM + +E VM F + + +LV T I+E+G+DIP ANTII+ Sbjct: 830 VHYLAKLFPEVPIGMAHGQMEDSRMEEVMEKFIQRHYRILVSTAIVESGLDIPAANTIIV 889 Query: 886 ERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFAL 945 RAD FG+++L+Q+RGRVGRS QAYA+ L P +T A+KRL+ + LG+G+ + Sbjct: 890 NRADMFGISELYQIRGRVGRSGQQAYAYFLIPSESGLTDTARKRLKTLQDNTSLGSGYQI 949 Query: 946 ATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVE 1005 A D+EIRGAG LLG +Q+G + +G LY+E++E A+ ++ EP L ++ ++ Sbjct: 950 AMRDMEIRGAGSLLGHQQTGHIALVGLDLYLEMVEEAI---QSRIEPEAVPLAREEVRID 1006 Query: 1006 LRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIAR 1065 L S P+D+I R+ FY+R++ AK E++ I+ E+ DRFG LP ++ L AR Sbjct: 1007 LGRESRFPEDYIEHPAQRIDFYRRLSLAKNMGEIDHIESEVSDRFGPLPRSSKGLFLAAR 1066 Query: 1066 LRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDL 1125 L+ + K G ++ ++ V++ + P + L K ++ + + Sbjct: 1067 LKFLSLKHGFSEVRVRDRELVVKPSFFGVFTPEKIQILTNKFEGRLWINPDSTFCLLGSP 1126 Query: 1126 SERKTRIEWVRQFM 1139 S ++ V + Sbjct: 1127 STFVNELDLVGHVL 1140 >UniRef50_A6L2L5 Transcription-repair coupling factor n=49 Tax=Bacteria RepID=A6L2L5_BACV8 Length = 1121 Score = 982 bits (2538), Expect = 0.0, Method: Composition-based stats. Identities = 362/1128 (32%), Positives = 579/1128 (51%), Gaps = 86/1128 (7%) Query: 18 LLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF-TDQMVMNLAD--WE 74 LG L +A A V+ + V + D++ A + +++Q D+ ++ Sbjct: 32 FLGGLHASAAALFVSSFLRENKQTFVFVLGDLEEAGYFYHDLTQVNGDEHILFFPSSYRR 91 Query: 75 TLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 + Y +I+ R L +L ++ L ++V L L + G+ Sbjct: 92 AVKYGQKDAANEIL--RTEVLSRLQKGDPLCVVTYPEALAEKVVSQEVLMDKTLKLGVGE 149 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 194 + + + L G+ HVD V E G+YA RG+++D+F SE PYR+DFF DE+DS+R Sbjct: 150 HVDTEFITEVLAGYGFEHVDYVYEPGQYAVRGSIIDVFSFASEYPYRIDFFGDEVDSIRT 209 Query: 195 FDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLP 254 F+V++Q + E+ ++I ++P DK+ + F R+T + Sbjct: 210 FEVENQLSKEKKQSIAIVPELTNAADKSGVSFFEFIPRETVLAMK--------------- 254 Query: 255 AGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPL 314 + L V E LA +E + L Sbjct: 255 ------------------------DFLWVRERIQVVREEALSPQALAAYEGEKTE----L 286 Query: 315 LPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDAL 374 + + + E ++ R++ + PT A L F + Sbjct: 287 MNLELKLIDGAEFTVRALDFKRIEFGNK--PTGTPQATLAFDTTVQPIFHKNFDLVSTSF 344 Query: 375 RKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGF 434 + + + +SE + + L ++ I + GF Sbjct: 345 TDYQKR-GYTLYICTDSEKQAKRLKDIFEERGDHITFIP------------VNKTLHEGF 391 Query: 435 VDTVRNLALICESDLLGERVARR--RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGR 492 D V + + +R + R D R+ ++ L++ G VVH++HGVGR Sbjct: 392 TDNVLKSCFFTDHQIF-DRFHKYNLRSDKARSGKVALTLKELSQFEPGDFVVHIDHGVGR 450 Query: 493 YAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSR 552 + G+ + G T E + L Y N+ ++V + SLH IS+Y G E L+KLG AW + Sbjct: 451 FGGLVRIPNGNTTQEVIKLIYQNEDVVFVSIHSLHKISKYKGKEGETPRLNKLGTGAWEK 510 Query: 553 ARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAV 612 +++ K++D+A +L+ +Y+QR ++GF++ D SF +E TPDQ +A Sbjct: 511 MKERTKSKIKDIARDLIRLYSQRKQEKGFSYSPDSFMQHELEASFIYEDTPDQLKATQDA 570 Query: 613 LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDR 672 +DM MDRLVCGDVGFGKTEVA+RAAF AV ++KQVAVLVPTT+LA QH+ F +R Sbjct: 571 KADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFSER 630 Query: 673 FANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH 732 ++P +++ +SR RSAK+ ++I+ E+A+GKI+IL+GTHK++ VKFKDLGLLI+DEE Sbjct: 631 LKDFPCKVDYLSRARSAKDVSRIVKELADGKINILVGTHKIIGKSVKFKDLGLLIIDEEQ 690 Query: 733 RFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE 792 +FGV KE+++ M+ NVD LT+TATPIPRTL ++ G RDLS+I TPP R ++T V Sbjct: 691 KFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEVHT 750 Query: 793 YDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 852 ++ ++ EAI E+ R GQV+++ N ++N+ + + +P+ R+ IGHGQM +LE+ Sbjct: 751 FNEDIITEAINFEMSRNGQVFFVNNRIQNLVELEAMIKRNIPDCRVCIGHGQMEPEKLEK 810 Query: 853 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 ++ DF + ++VL+ TTIIE+GIDIP ANTIII +A +FGL+ LHQ+RGRVGRS+ +A+ Sbjct: 811 IIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKAFC 870 Query: 913 WLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF 972 +LL P ++T +A++RL+AI + DLG+G +A DL+IRGAG +LG EQSG + +G+ Sbjct: 871 YLLAPPLTSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGFIADLGY 930 Query: 973 SLYMELLENAVDALK--------------AGREPSLEDLTSQQTEVELRMPSLLPDDFIP 1018 Y ++L AV LK AG E + + +VE + L P+++IP Sbjct: 931 ETYQKILAEAVKELKEDEFADLYAEELQAAGEEKISGENFVDECQVESDLELLFPNEYIP 990 Query: 1019 DVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 + R+ Y+ + + + +L K L DRFG +P LL I LR+ A++LG+ K+ Sbjct: 991 SSSERMLLYRELDGLELDKDLLAFKARLEDRFGKVPPEGLELLRIVPLRRLAKRLGVEKV 1050 Query: 1079 EGNEKGGVIEFAEK------NHVNPAWLIGLLQKQPQHYRLDGPTRLK 1120 + F +I + K P++ L + Sbjct: 1051 FLKAGRMTLFFISNQESPYYQSAAFGKVIDYMSKNPRYCNLREQNGKR 1098 >UniRef50_A6GBX4 Transcription-repair coupling factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GBX4_9DELT Length = 1243 Score = 980 bits (2535), Expect = 0.0, Method: Composition-based stats. Identities = 407/1215 (33%), Positives = 621/1215 (51%), Gaps = 88/1215 (7%) Query: 9 LPVKAGEQRLLGELTGAACATLVAEIAE--RHAGPVVLIAPDMQNALRLHDEISQFTD-- 64 +++G ++ + G L+A P+V +APD A + +++ F Sbjct: 14 TALRSGRRKRVLGAEGGYRGLLLARAMADPETDAPLVYVAPDDTTAQTVAADVAFFAGSG 73 Query: 65 --------------QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPV 110 Q V+ + + + PY SP + +R++ L +L + ++I+ + Sbjct: 74 EGASATDAGPVGSNQRVLTVPEIDVSPYGDVSPDPRSVGARMAALERLRAGEPELIILSL 133 Query: 111 NTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLD 170 +LM++ P + L R+ L +AGYR VD V + G +A RG ++D Sbjct: 134 RSLMRKTIPAEAFAQLCRTWAREGELGREEAAAFLSAAGYRRVDVVGDPGCFAIRGGIMD 193 Query: 171 LFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFP-----TDKAAIE 225 ++ P RL+++ DEI+ +RVFD DSQR+L EV +I + P E T A+ Sbjct: 194 VWVPLERFPARLEWWGDEIERIRVFDPDSQRSLREVRSIRVHPVRETVATGSRTTANALR 253 Query: 226 LFRSQWRDTFEVKRDP-EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT--LL 282 L + D EV + + G GI+ P+F + L + Y PAN L Sbjct: 254 LAVLELGDRIEVPSSATRQVIANLGAGVDFFGIDALTPVFH-DGLASVADYLPANARWYL 312 Query: 283 VNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTE 342 L ER + + R V+ + P+ + ++L +L+ V + + Sbjct: 313 DEPEALVGLGERMADELDFEY-RRAVEAKHLVAAPEDFFCTREQLREQLRGAAVVGARLD 371 Query: 343 HLPTKAANANLGFQKLPDLAVQAQQKAPLDALR------------KFLETFD-------- 382 + + DL A +A L+A R + Sbjct: 372 LYDPEQTKGDRRGVIRVDLGRNAPLRAKLEAARGQKGGELLRPVVDHIRELGVHADATLG 431 Query: 383 ----------GPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG---------- 422 VV + E L +L + P+ + + G Sbjct: 432 GALDPSERDPWDVVLVAPNTTHAERLTAMLRGYGLRPEGTSKQEREHSSGAGGAIELGGL 491 Query: 423 ------RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAE 476 ++ G GF L ++ ES++ G R + RR + +L++ Sbjct: 492 ELQAPRLRVIAGTLSEGFASEGDRLLVVSESEIFGPVARREGRRRRRRK---AGVASLSQ 548 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 L IG VVH+ HGVGRY G+T L A G+ G+++++ YA KLY+PV + I RY Sbjct: 549 LSIGDYVVHVVHGVGRYVGLTKLAAQGVPGDFVIVEYAKKDKLYLPVHRIGEIERYVSAE 608 Query: 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596 + L ++GG + +K VR +A ELL IYAQR A G AF + Y F + Sbjct: 609 AKAPKLDRMGGQTFQAKAKKIRSDVRQLAEELLQIYAQREAMTGHAFAPGGDMYAEFEQT 668 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 FPFE TPDQA AI++V D+ MDRLVCGDVGFGKTEVA+RAAF KQVAVL Sbjct: 669 FPFEETPDQADAIDSVQDDLSSQRPMDRLVCGDVGFGKTEVALRAAFRVAAAGKQVAVLA 728 Query: 657 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS 716 PTT+L QQHY F +R + +P+ + +++RF S ++ + LA + +G +D+++GTH+LL Sbjct: 729 PTTVLVQQHYLTFSERMSAFPLEVGVLNRFSSPADRKRTLAGIKDGTVDVVVGTHRLLSR 788 Query: 717 DVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 776 DV+FK+LGL+I+DEE RFGV+ K+R K ++ +VD+LTLTATPIPRTL+M++ GMR++S+I Sbjct: 789 DVRFKELGLVIIDEEQRFGVKQKDRFKKLKTSVDMLTLTATPIPRTLHMSLLGMREISMI 848 Query: 777 ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 T P RLAV+T++ + +V+ E I RE+ RGGQ++Y+ V I++ A R+ ELVPEA Sbjct: 849 TTAPVDRLAVRTYLTRHSDVVLEEGIRRELARGGQIFYVVPRVMGIEEHAVRIRELVPEA 908 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 R+ + HGQM LE+ M DF +VLV TTIIE+G+DIP ANT+ I RAD FGLAQL Sbjct: 909 RVIVAHGQMPPEMLEQTMVDFVRHEADVLVSTTIIESGLDIPRANTMFIARADQFGLAQL 968 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 +QLRGR+GRS +AY +L+ + ++ DA++RLEAI +LGAGF +A+ DLEIRGAG Sbjct: 969 YQLRGRIGRSKLRAYCYLMVASLERLSEDARRRLEAIQRHSELGAGFNVASQDLEIRGAG 1028 Query: 957 ELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 +LLG QSGS++ IGF Y +L AV L+ EV +P+ LPD + Sbjct: 1029 DLLGRRQSGSIQAIGFEAYARILGEAVAELRG-----DPISQETDPEVAFDVPAFLPDTY 1083 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076 + DV RL FY+R+++++ +E+ E+ EL DR+G LP AR + + ++L Sbjct: 1084 VEDVGARLDFYRRLSTSRDADEVREVLEELHDRYGELPVEARHFGLMMACKSYGRRLRAT 1143 Query: 1077 KLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERK-----TR 1131 LE I + + ++P +GL RL + + + R+ + Sbjct: 1144 ALELRAMRFSIRLSPETPLSPEVALGLSDATDGRVRLAPGGE-RILATIPNRQGKDCSRQ 1202 Query: 1132 IEWVRQFMRELEENA 1146 +E + EL A Sbjct: 1203 LEVCEGVLAELATYA 1217 >UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9Q8_9ACTN Length = 1198 Score = 979 bits (2532), Expect = 0.0, Method: Composition-based stats. Identities = 354/1114 (31%), Positives = 559/1114 (50%), Gaps = 50/1114 (4%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 E +R + G+ L ++ +A +VA A A P++L+ A R ++ + Sbjct: 15 EIHRIWNELDQGKDCTL-NISQSARPFIVAACACAQARPILLVVSGEDAADRAARILAGW 73 Query: 63 T-DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 +V D LP+ S ++ +R L+ L QR V++ L++R+ P + Sbjct: 74 LGPDVVFRYPDRADLPWSDKSASAEVCGTRAEALFHLAQPQRCVVVASARALLRRLPPKT 133 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRH---VDQVMEHGEYATRGALLDLFPMGSEL 178 + G L AL QL GY V +V E G + G +D+F + Sbjct: 134 SSFAQQQKICIGDELDIYALARQLVLWGYVSTTVVKEVREPGYFCVHGDSVDVFSPCEQA 193 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK 238 P R+ FF DE+D +R + +T+ + A E I+ +++ D + Sbjct: 194 PVRISFFGDEVDEIRKVVPSTGQTISSQQQAVFYAARELELSPETIQCAKNKLYDKAQED 253 Query: 239 RDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQAD 298 D E + Q+ + ++ + P + + Y + L+V D Sbjct: 254 LDTERVLDQIEESVYTNELDAYLPYLYP-STASVIDYMHPSALVVL-----AEPRALFDD 307 Query: 299 TLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKL 358 ++ + L+ EL + R+ L + A+ ++ ++ Sbjct: 308 CQRAYDELMHASTEKRVSLDGLYTSPVEL--DFGKQQRLSLSSLARQGMRASNHVVTEQC 365 Query: 359 PDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKI----------- 407 + + +R+ L + VVFSV G R AL I Sbjct: 366 D---IAGSASKMIGRIRELLAN-NSAVVFSVPDRGARRALQLSFTDENISFEDASEHASE 421 Query: 408 ------------APQRIMRLDEASDRGRYLMIG-AAEHGFVDTVRNLALICESDLLGERV 454 Q + + R + + G V +LA+ SDL Sbjct: 422 HASKRAPEHESEHNQDLEAQNLPLPRNKVVFFADPINAGIVIPSAHLAIFSVSDLNAHLN 481 Query: 455 ARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA 514 ++ + + I+P L G VVH HG+ + + E G +Y +LTYA Sbjct: 482 NKKHR--FQKIDPTKLTFPF---KPGDYVVHATHGIALFQKIVQQEVAGKKRDYFLLTYA 536 Query: 515 NDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQ 574 D KLYVP + I+RY G L +L WSRA +A + + +A +L+D+Y + Sbjct: 537 QDDKLYVPFEQVDKITRYIGPDGSTPRLTRLNSADWSRACTRARKSAQKMAFDLVDLYTR 596 Query: 575 RAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGK 634 R+ +GF+F D + SFP+ T DQA+A++ + +DM MDRL+CGDVGFGK Sbjct: 597 RSTIKGFSFSFDTPAQEDMETSFPYTLTRDQARALDDIKADMQSATPMDRLLCGDVGFGK 656 Query: 635 TEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQ 694 TEVA+RAAF +HKQV VL PTT+LAQQH++ F +RF + V + ++SRF EQ + Sbjct: 657 TEVALRAAFKCCQDHKQVMVLCPTTILAQQHFETFYERFTPFEVNVRVLSRFIKPAEQKR 716 Query: 695 ILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTL 754 L + G +D+LIGTH+LL SDV +LGL+I+DEE RFGV+HKE++K +R VD+LTL Sbjct: 717 TLEGFSTGDVDVLIGTHRLLSSDVNPSNLGLIIIDEEQRFGVQHKEQLKNIREQVDVLTL 776 Query: 755 TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYY 814 +ATPIPRT+ MAMSG+RD+S+I + PA R V+ V E+DS ++ +AI E+ R GQVYY Sbjct: 777 SATPIPRTMQMAMSGVRDMSLILSAPAGRKPVRVHVGEWDSDLISDAIRLELARKGQVYY 836 Query: 815 LYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874 + N V+ I A ER+ PEAR+ + HGQM ++E VM F +VLV TTIIE+G Sbjct: 837 VSNRVKTIDDALERVHACAPEARVGVAHGQMSPSQIEEVMLLFEEHEIDVLVATTIIESG 896 Query: 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIA 934 ID P NT+IIE + GLAQL+QL+GRVGR QAYA+ + P + +T +A++RLEAI Sbjct: 897 IDNPHTNTLIIEDSQRLGLAQLYQLKGRVGRGRVQAYAYFMFPPTEPLTEEARRRLEAIY 956 Query: 935 SLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSL 994 ++LG+G +A DLEIRGAG L+G EQ G++ +GF L+ ++L +AV K + + Sbjct: 957 EHQELGSGMRIAMKDLEIRGAGSLMGAEQHGNLSGVGFDLFTQMLSDAVREAKGETQHTD 1016 Query: 995 EDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLP 1054 + + + +D++P+++ R+ Y+R+A+A +E++ ++ E +D G L Sbjct: 1017 L----AEVVINIPADFYFSEDYVPEIDKRVLLYRRLAAATELSEVDALEKETLDTHGALE 1072 Query: 1055 DPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088 L AR+R +A +LG++ + +++ Sbjct: 1073 PAGVNLFGRARIRIRAARLGVQTVSALTDKIILQ 1106 >UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Coriobacteriaceae RepID=C8WGM0_EGGLE Length = 1161 Score = 977 bits (2526), Expect = 0.0, Method: Composition-based stats. Identities = 374/1168 (32%), Positives = 587/1168 (50%), Gaps = 61/1168 (5%) Query: 10 PVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-DQMVM 68 + AGE LG + +A LVA P +++ A+ ++ + D+ VM Sbjct: 22 KLDAGEDGTLGVAS-SARPFLVAARFAHRPQPTLVVVAGEDAAVAFSRSLAAYLGDERVM 80 Query: 69 NLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHAL 128 + P+ ++ R+ ++ L + + V++ L++ + P + Sbjct: 81 RFPERSDYPFVPKPSDPAQVARRMEAVHALASGREVVVVASARALVRALPPAGSDVHVPV 140 Query: 129 VMKKGQRL------------SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176 + G+ L + L+ GYR+ ++ G +A RG +D+FP Sbjct: 141 ALSAGRELAAMPGAQAASVTEFEDFAHALEERGYRNTGELDGPGTFAVRGGTIDVFPGNL 200 Query: 177 ELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE 236 P RLDFF DE++ +R + +T++ + +++ P EF K + R + Sbjct: 201 VYPVRLDFFGDELEEIRRIVPTTGQTIQALPDVSIYPVVEFSCSKRGLARARQKLERPAA 260 Query: 237 VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL--LVNTGDLETSAER 294 + +++ G G + P ++ L Y L L+ L Sbjct: 261 TNPVLRDVLEKLDGGLRFDGSDMLLPYLYA-TTSTLGDYVRPGALSVLLEPRSLFDDMSH 319 Query: 295 FQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLG 354 D R + + P ++ + + + + LP K Sbjct: 320 AYDDAAGRAKGSSIPVDGLYAEPGAVSFGEGQRATYVSIMRVGGHVDDELPVKRVE---- 375 Query: 355 FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMR 414 V LR ++T D VVFS + R+ + + Q + Sbjct: 376 --------VAGHPDKLFGRLRSLVDT-DYTVVFSASNFRARQDMKLAFVDHGLPIQETLD 426 Query: 415 LDEASDRGRYLMIGAAEHG------------FVDTVRNLALICESDLLGERVARRRQDSR 462 +E +D + G + LA++ SD G +R Sbjct: 427 AEEDADELEGIAKRRLRRGVVNVVDVDVPLGMIIPKAKLAIVSLSDTQGASTSR----PS 482 Query: 463 RTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVP 522 R ++ + G VVH HGV + + + G +YL+L Y+ KLYVP Sbjct: 483 RHVDITEITFPY---QPGDYVVHAAHGVAYFKELVRRDVDGTARDYLLLEYSEGDKLYVP 539 Query: 523 VSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582 V L ++RY G + L +L WSRA KA + + +A +L+D+YA+RA+ +G+ Sbjct: 540 VEQLDRVTRYVGPEGASPRLTRLNTADWSRALAKARKATKKLAFDLVDVYARRASVQGYR 599 Query: 583 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 642 F D + ++FP++ TPDQ AI V +DM MDRLVCGDVGFGKTEVA+RAA Sbjct: 600 FGPDTAAQREMEEAFPYQETPDQLAAIADVKADMQSAKPMDRLVCGDVGFGKTEVALRAA 659 Query: 643 FLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 702 F A + KQV VL PTT+LAQQHY NF++R + VR+E++SRFR+ +Q L EG Sbjct: 660 FKATQDSKQVMVLCPTTILAQQHYTNFKERCEPFGVRVEVLSRFRTPAQQAAALKGFQEG 719 Query: 703 KIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRT 762 +D+L+GTH+LL DV DLGL+I+DEE RFGV HKE++K +R ++D+LTL+ATPIPRT Sbjct: 720 DVDVLVGTHRLLSRDVNPHDLGLVIIDEEQRFGVGHKEQMKNLRESIDVLTLSATPIPRT 779 Query: 763 LNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENI 822 + M++SG+RD+S+I TPP R V+ V E+D VV AI RE+ RGGQVYY+ N V ++ Sbjct: 780 MQMSLSGVRDMSLILTPPDERRPVEVHVGEWDPDVVSGAIRRELARGGQVYYVSNRVRSM 839 Query: 823 QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 ++A R+ EAR+ + HGQM + +LERVM DF +VLV TTIIE+GID P NT Sbjct: 840 EEAVRRVTAAAGEARVGVAHGQMSKEQLERVMEDFSAGELDVLVATTIIESGIDNPHTNT 899 Query: 883 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAG 942 +IIE + +GLAQ++QL+GRVGRS QAYA+ + P +T +A RL A+ DLG+G Sbjct: 900 LIIEDSQRYGLAQMYQLKGRVGRSCTQAYAYFMFPEHMELTEEAAARLTALNEHTDLGSG 959 Query: 943 FALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQT 1002 +A DLEIRGAG LLG EQSG+M +GF L+ ++L AV A + G +++ L + Sbjct: 960 MRIAMRDLEIRGAGSLLGAEQSGNMSAVGFDLFAQMLNQAVSATREGDLKAMDALPPALS 1019 Query: 1003 EVELRMPS--LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTL 1060 ++ + +P LP++++PD + R+ +Y+RIASA TE +E+++ +L D+ +P A+ L Sbjct: 1020 DITVNVPGHTYLPEEYVPDADERVLWYRRIASAATEQAVEDVRADLADKRPDMPQAAKNL 1079 Query: 1061 LDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVN-PAWLIGLLQKQPQHYRLDGPTRL 1119 L+ AR++ A + I+ + V+E ++ P + L++ Y L +L Sbjct: 1080 LEKARIKAYANEHHIKTVSVTAGKLVVE-----PIDVPRDKMTGLRRAGGRY-LADKRKL 1133 Query: 1120 KF---IQDLSERKTRIEWVRQFMRELEE 1144 L E + V +F+ EL + Sbjct: 1134 SLPLRYFKLDEGDNLLAPVAEFLEELAK 1161 >UniRef50_C5NXX8 Transcription-repair coupling factor n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXX8_9BACL Length = 1183 Score = 976 bits (2524), Expect = 0.0, Method: Composition-based stats. Identities = 370/1109 (33%), Positives = 609/1109 (54%), Gaps = 58/1109 (5%) Query: 27 CATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQD 86 A + ++ VV+++ A L +S F + + + L S D Sbjct: 31 RALEIYNEYKQSDKTVVVVSQSKAEAEELFAILSDFEGET-YIYPEIDILK-RHTSKSND 88 Query: 87 IISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLD 146 ++ + + L L + ++I+P+ + + V S ++ + + +S D L+ +L Sbjct: 89 LVQNSIKVLENLVHNIQSIIIIPIEAIYRTVKNPSDFKNNSFEINEDTVISFDELQRKLV 148 Query: 147 SAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEV 206 + GYR V+ V GE++ RG+++D+F SE P RLDFFDDE+DS+R+FD +QR+L+ + Sbjct: 149 NMGYRRVESVDVVGEFSKRGSIVDIFSPLSEKPIRLDFFDDELDSMRIFDEITQRSLDRI 208 Query: 207 EAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR-DPEHIYQQVS-----------KGTLP 254 ++ + P +F ++ + + K+ + YQ++S Sbjct: 209 DSAVIYPTSDFFLTSEEKDIVVERVLAKLDDKKIQKDENYQEISTYLKEKVEIYRATGDF 268 Query: 255 AGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQADTLARFENRGVDPMR 312 + +E + L + E + Y +T++ N + E + L + + Sbjct: 269 SDLESFSNLIY-ENTYSIADYLNDDTIVFYDNYHKILEKIEGLREYFLTSLQEMNRSYIY 327 Query: 313 PLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLD 372 + + ++ L + L T L K N + DLA + ++ Sbjct: 328 QDVIDNIAFEKIQNLDIR-----KYYLSTLKLNDKIIEKNYNL-DIIDLAYYSSEEYLAK 381 Query: 373 ALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEH 432 +R+ + T + V+ S+ ++ +++ + ++L + G+ + H Sbjct: 382 EIREKI-TDNYKVIISLNTQKQKDYVEKVLFDNYF----YDDIYYGVKEGKIFIDLNKYH 436 Query: 433 --GFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 G D + L+ +L E ++R+ + N + IRN EL+IG +VH+ HG+ Sbjct: 437 LKGLEDRKNKIFLLTPRELFTEEERKKRRVKFKYTNSEK-IRNYQELNIGDYIVHVSHGI 495 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEE-NAPLHKLGGDA 549 G Y G+ +E GG+ ++L + Y +YV +++++ I +Y + L+KLG Sbjct: 496 GLYEGIENVEVGGVFKDFLKIVYDGGDIIYVDINNMNYIQKYTASTDNRKPALNKLGTKN 555 Query: 550 WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAI 609 W + + + +++ D++ +L+ +Y +R G+A+ D F F F T DQ +A Sbjct: 556 WQKTKSRVRKEIEDISEDLIKLYIKRELSSGYAYSIDGSLQAEFEADFSFTPTEDQVKAT 615 Query: 610 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 669 + DM + MDRL+CGDVGFGKTEVAMR AF AV ++KQVAVLVPTTLLA+QHYDNF Sbjct: 616 EEIKRDMEKERPMDRLLCGDVGFGKTEVAMRVAFKAVTDNKQVAVLVPTTLLAEQHYDNF 675 Query: 670 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 729 +RFAN+P+ IE++SRF+SAK+ T+I ++ EGKIDI++GTHKLL K+KDLGLLI+D Sbjct: 676 VNRFANFPINIEVVSRFKSAKDITEICKKLEEGKIDIIVGTHKLLNDKFKYKDLGLLIID 735 Query: 730 EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF 789 EE RFGV+HKE+IK ++ VD+LTL+ATPIPRTL+M++ G+RDLS+I TPP R ++TF Sbjct: 736 EEQRFGVKHKEKIKHLKNTVDVLTLSATPIPRTLHMSLIGIRDLSVIETPPRERQPIQTF 795 Query: 790 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERE 849 V + MV++EA++ E+ RGGQV+Y+YN VE I + L L+P+ IA HG+M +RE Sbjct: 796 VTAQNKMVIKEAVMNEVNRGGQVFYVYNRVETIDEKYLELKRLLPDINIAYAHGRMSQRE 855 Query: 850 LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 909 LE +M D +++++L+ TTIIETGIDI NT+I+E AD FGL+QL+QLRGRVGRS + Sbjct: 856 LENIMTDVIDRKYDMLISTTIIETGIDISNVNTLIVEDADRFGLSQLYQLRGRVGRSSRE 915 Query: 910 AYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMET 969 AYA+L+ K++T +++KRL AI + LG+GF +A DL IRGAG++LG Q G +++ Sbjct: 916 AYAYLMYEPFKSLTENSEKRLSAIKNFTSLGSGFKIAMQDLSIRGAGDVLGGRQHGFIDS 975 Query: 970 IGFSLYMELLENAVDALKAGREPSLEDLTSQQT--------------------------E 1003 +G++LY ++LE + A K EP LE +Q E Sbjct: 976 VGYTLYSQMLEQEIQAKKGILEPLLEQDRTQDVSYYENIIKEAAPSIKKDIFEVETDDLE 1035 Query: 1004 VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDI 1063 ++L + + +P ++I ++ FYKR+ + ++ E+E I +LIDRF + L+DI Sbjct: 1036 IKLNVDAFIPKEYISSDADKIDFYKRLNNVVSDEEIESIVEDLIDRFSDFGEEVNNLIDI 1095 Query: 1064 ARLRQQAQKLGIRKLEGNEKGGVIEFAEK 1092 L+ A+ + ++ VI F ++ Sbjct: 1096 CYLKVMAKNTMVTSIKELANKVVITFNKE 1124 >UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C986_9FIRM Length = 1150 Score = 976 bits (2523), Expect = 0.0, Method: Composition-based stats. Identities = 351/1125 (31%), Positives = 601/1125 (53%), Gaps = 37/1125 (3%) Query: 37 RHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDIISSRLSTL 95 + PV+ I D +A + +S + ++ S ++ + R++ + Sbjct: 45 KEKRPVIYILKDDVSAKETYLNLSDILSEKDILYYPAKPITHEFIDSHSMELTNKRVNVI 104 Query: 96 YQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQ 155 + +++ +N +++ + + K L D L+ GY + Sbjct: 105 KNAVMGSKKIIVTSINAAIEKGLF--WGKDSIITKKTEDILDIDEFIEILNKFGYAREYE 162 Query: 156 VMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAH 215 V G Y+ +G ++D+F MG E+P R++FFDDEIDS+R FD ++ +++E++ L+PA Sbjct: 163 VTGQGAYSVKGGIVDVFIMGDEVPVRIEFFDDEIDSIRTFDKNTGKSIEKINKFTLVPAK 222 Query: 216 EFPTDKAAIELFRSQWRDTFE----------VKRDPEHIYQQVSKGTLPAGIEYWQPLFF 265 D I + R E + ++ +Y++++ T + + Sbjct: 223 TSLLDYDEINKLNKKVRAKLEKAITQNEDEEIDKNYRELYEKIADDTNDTTKYIF---YA 279 Query: 266 SEPLPPLFSYFPANTLLVNTGDL-ETSAERFQADTLARFENRGVDPMRPLLPPQSLWL-- 322 S+ L + ++ + + + + RF + ++ + + + Sbjct: 280 SKQTKSLIDLYKDPLIIFDDYSIIKKTYNRFFKENKEELKDLAEHGKMLDIQVNNHFKFA 339 Query: 323 RVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFD 382 +E F L + L + + + ++ +D + +L+ D Sbjct: 340 EAEERFINLDSLIYFDLSMASNNLFCKDI-VEVKSSDNINYVKNINYLIDNIVTYLKE-D 397 Query: 383 GPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLA 442 V+ + ++E ++ L E L+ I ++ + L+ +G L Sbjct: 398 YKVIITYKNEKEKKNLSEFLSNYNIDYTHTVK-----EGHVALVKSNIRNGVNILSEKLF 452 Query: 443 LICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAG 502 ++ +D+L ++ A++++ + N +E+ G VVH +G+GRY GM +EAG Sbjct: 453 ILSYNDVLIKKEAKKKRTKKDKHNEKAF---FSEITKGDYVVHETYGIGRYLGMVNMEAG 509 Query: 503 GITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVR 562 G+ +YL + +A + KLYV + ++L+S+Y G ++ L+KLG W + K + V+ Sbjct: 510 GLYNDYLEIEFAGNDKLYVIANKMNLVSKYIGSSDAPPKLNKLGSQVWENTKNKTRKAVK 569 Query: 563 DVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAM 622 ++A E + +YA+R +GFAF D + F D+F +E T DQ + + V DM +P M Sbjct: 570 ELAKEYITLYAKRREIKGFAFSADTPWQKEFEDNFGYELTEDQERCVREVKEDMEKPYPM 629 Query: 623 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM 682 DRL+CGDVGFGKTEVA RA F AV + KQ AVLVPTT+LA QHY+ F +RF ++PV+IEM Sbjct: 630 DRLICGDVGFGKTEVAARAIFKAVMDGKQCAVLVPTTILAMQHYNTFVERFKDFPVKIEM 689 Query: 683 ISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERI 742 +SRF++ KE+ +I+ ++ GK+DI+IGTHKLL +V FKDLGLL+VDEE RFGV HK+++ Sbjct: 690 LSRFKTKKEENRIIDKLERGKVDIVIGTHKLLSDNVNFKDLGLLVVDEEQRFGVAHKDKL 749 Query: 743 KAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAI 802 K ++ NVD LTL+ATPIPRTLNM++ G+RDLS I PP R +T+V EYD ++++AI Sbjct: 750 KLLKENVDTLTLSATPIPRTLNMSLIGIRDLSTIEKPPKEREETETYVIEYDDYIIKDAI 809 Query: 803 LREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRF 862 RE+ RGGQV+++YN V+N +K +L +L+P ++ +GQM ERELE+ M F ++ F Sbjct: 810 NRELSRGGQVFFVYNSVKNAEKTCLKLRKLIPGLKVEFANGQMPERELEKTMFRFLNKEF 869 Query: 863 NVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAM 922 +VLVCT I+E G++I ANT+II+ ++ GL+QL+QLRGRVGRS+ AY ++ KA+ Sbjct: 870 DVLVCTAIVENGLNILNANTMIIKEGNNLGLSQLYQLRGRVGRSNKNAYCYVTYEKDKAL 929 Query: 923 TTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENA 982 A KRL+AI G+GF +A DL+IRG+G LLG QSG +G+ LY ++L+ A Sbjct: 930 NEVAMKRLKAINEFTKFGSGFQIAIRDLQIRGSGNLLGANQSGHFTNVGYELYTKMLQEA 989 Query: 983 VDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEI 1042 + K + +T + +++ + + +I D R+ YK IAS +TE + +E+ Sbjct: 990 LKESKGEAQ-----KEPVETTINIKINAYIDKKYIEDEKQRIITYKEIASIETEADKDEM 1044 Query: 1043 KVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE--FAEKNHVNPAWL 1100 LID +G + L+DI+ LR +A K I + NE+ I F ++ ++ + Sbjct: 1045 VENLIDIYGDIRKETLNLMDISLLRNKASKKDILSINVNEENREIYFDFDKEKEIHMDKI 1104 Query: 1101 IGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEEN 1145 L + + + ++ + + + + + + ++ +N Sbjct: 1105 NKLYEIFKGKF-IKNSKFIRICFPYKKTRNVHQSIMKLIDKIIDN 1148 >UniRef50_A9NE83 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NE83_ACHLI Length = 1143 Score = 975 bits (2521), Expect = 0.0, Method: Composition-based stats. Identities = 370/1146 (32%), Positives = 602/1146 (52%), Gaps = 50/1146 (4%) Query: 20 GELTGAACATLVAEIAERH---AGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWET 75 G+ G + + L ++ R+ + ++ P++ A + +D +S D+ V+ +T Sbjct: 21 GDFKGVSHSYLQTMLSLRYDISNKNIFVVLPNLYEAQKYYDTLSSIIDESKVLFYPMDQT 80 Query: 76 LPYDSFSPHQDIISSRLSTLYQLPT-MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 L + + RL TL +L + ++I ++ R + Q Sbjct: 81 LTSMMALGSPEFKNERLFTLRKLLQADDKYIIITTQEGILHRQLKPEDYERSVKKISVNQ 140 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 194 L +L GY+ V GE++ RG++LD++ + PYRLDFF D ++S++ Sbjct: 141 DYDLTDLTKKLIYDGYQFNYTVERPGEFSIRGSILDIYTHDYKDPYRLDFFGDTLESIKT 200 Query: 195 FDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF-------EVKRDPEHIYQQ 247 FDV +Q+++ + +I++ P +E E + F + + E Sbjct: 201 FDVQTQKSMNHITSIDIAPLNELFYTDELKEQALEKISKYFSGFKLSEKEDKKLETDLMH 260 Query: 248 VSKGTLPAGIEYWQPLFFSEPLPPLFSY-FPANTLLVNTGDLETSAERFQADTLARFENR 306 + + + + FF++ + + + P + +LV++ +E + E D L Sbjct: 261 IEERKRMDSLSMYIE-FFNDEVTTILDFSNPYDLILVDSYKMELNEETTYQDLLTYSHTM 319 Query: 307 GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQ 366 + L + + + + P+ +LG + Sbjct: 320 QGEAFIGL-----NFKVKLKELLKKNHLSFQIYSVSDKPST----DLGVLDVDPFVGH-- 368 Query: 367 QKAPLDALRKFLETFDG-PVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYL 425 L+ L F+ ++G ++ S ++ E + E L KI+ +++ D L Sbjct: 369 ----LEQLILFINEYNGFNILISTKTMVSFERIKEHLTNHKISY----SVNQFKDAMVVL 420 Query: 426 MIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVH 485 + F+D ++ E +L + + + R IN IR+++EL G VVH Sbjct: 421 VEEDLPGSFIDLNHKFIILTEDTILDTK-KKAKVRYRSVINQAVKIRDISELQNGDYVVH 479 Query: 486 LEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKL 545 + G+G+Y G+ T+ G +YL + Y D LYVP + L+ +Y + L KL Sbjct: 480 YDFGIGQYIGLKTMTLSGDKRDYLHIVYDKDEALYVPTDQIDLVLKYKSYDQVKPKLSKL 539 Query: 546 GGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQ 605 WS+ + + +K++D++ LL++YA+R EG+ F + F F ++ T DQ Sbjct: 540 NAKQWSKTKAQVKQKIKDLSDRLLNLYAKRHQAEGYQFSPRTDMLTSFEKDFNYDETIDQ 599 Query: 606 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 665 +AI+AV DM MDRL+ GDVG+GKTEVA+RAAF AV + KQVA LVPTT+LA+QH Sbjct: 600 QKAIDAVFEDMESSKPMDRLIAGDVGYGKTEVALRAAFKAVVDAKQVAYLVPTTVLARQH 659 Query: 666 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 725 Y F+DRF + + ++SR+ S +EQ ++L ++A+G ID++IGTH+LL D+ FKDLGL Sbjct: 660 YLTFKDRFEKYGGSVALLSRYVSKREQKEVLEKIAKGYIDVVIGTHRLLSDDIVFKDLGL 719 Query: 726 LIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785 I+DEE RFGV+HKE+IK ++ NVD LTL+ATPIPRTL MAM G++DLS+I TPP R Sbjct: 720 FIIDEEQRFGVQHKEKIKEIKVNVDTLTLSATPIPRTLQMAMYGLKDLSMIDTPPLNRYP 779 Query: 786 VKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQM 845 V+T+V E +++EAI RE+ RGGQV+YL+N+ E ++ +L +LVP ARI HG+M Sbjct: 780 VQTYVVERQPALIKEAIDRELSRGGQVFYLFNNTERMEAQVLKLQQLVPNARITYAHGKM 839 Query: 846 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 905 + +E ++ F + F++LV TTIIETG+DIP NT+II ADH GLAQL+QLRGRVGR Sbjct: 840 TKNRIEDTLSRFVEKEFDILVSTTIIETGVDIPNTNTLIIHDADHLGLAQLYQLRGRVGR 899 Query: 906 SHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 S AYA+L+ K + +A+KRL I DLG+GF +A DL IRGAG++LGEEQSG Sbjct: 900 SDRIAYAYLMFDGYKDVNDEAKKRLSVIEDFTDLGSGFKIALRDLGIRGAGDILGEEQSG 959 Query: 966 SMETIGFSLYMELLENAV--DALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTR 1023 ++++G LYM+LL+ + A ++ + +++ + S++ +P +I R Sbjct: 960 FIDSVGMDLYMKLLDEVMTGKAYESPKTDTVDQVFSKR---------HIPPTYINHDPVR 1010 Query: 1024 LSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL--EGN 1081 + +KRIAS +LE++K EL+DRFG + T + ++ ++GI K E + Sbjct: 1011 IEIHKRIASLNKMQDLEDLKQELLDRFGPIDIDLMTYMYEKLYKKLGHQVGIEKTVHEKD 1070 Query: 1082 EKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRE 1141 VI + ++ L+ + K + RL G +R ++S + W+ E Sbjct: 1071 FVKMVISLEKSELIDGMRLLYVASKSKMNIRL-GQSRGHVEINMSTKHETKHWL-YLACE 1128 Query: 1142 LEENAI 1147 L E I Sbjct: 1129 LLEMYI 1134 >UniRef50_C0BHL1 Transcription-repair coupling factor n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BHL1_9BACT Length = 1064 Score = 974 bits (2519), Expect = 0.0, Method: Composition-based stats. Identities = 361/1117 (32%), Positives = 576/1117 (51%), Gaps = 89/1117 (7%) Query: 45 IAPDMQNALRLHDEISQFT-DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLP-TMQ 102 I + + A +++ + V+ Y + + R L ++ + + Sbjct: 2 ILDNAEQAAYYLNDLERLLKPSDVLYFPASYRQAYAQETTDNANVLLRSEVLKKISGSKK 61 Query: 103 RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEY 162 ++I + +++ + L + K LS + + L G++ VD V GE+ Sbjct: 62 PRIIISYPQAVFEKIISQNTLKRITFKIIKDTILSLNFINESLFEMGFQRVDFVTSPGEF 121 Query: 163 ATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKA 222 A RG ++D+F + PYR++FFDD ++ L FDV +QR++ ++I LLP Sbjct: 122 AVRGGIIDVFSFAYQHPYRIEFFDDTVERLCSFDVQTQRSITAFDSIELLP--------- 172 Query: 223 AIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLL 282 DT F++ + +FPAN+ Sbjct: 173 ----------DTSNND--------------------------FTDKRKSILEFFPANSSF 196 Query: 283 VNTGDLETSA--ERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL- 339 + + +T+A E+ + ++ V PP++L++ DE + N L Sbjct: 197 IFSNFDKTTARLEQLFEKATDAYNSKEVTTQY---PPETLFMNRDEWIKDSHNKSVFVLE 253 Query: 340 KTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALG 399 +TE LP + + ++ P A Q + L + + +F +E + + Sbjct: 254 RTEDLPITS---QIHVKQSPQPAFNKQFDILISHLNENNKRGYKNTLF-CSNEQQTKRFH 309 Query: 400 ELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQ 459 ++ ++ + + GF D A + + ER + + Sbjct: 310 DIFQELEKTVHYKTE------------VLSIYEGFEDLEAQWACFSDHQIF-ERYHKYQL 356 Query: 460 DSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKL 519 S ++ L ++ +G V H++HG+G + G+ +E G E + L Y L Sbjct: 357 KSDAARKQALNLKELTQMEVGDYVTHIDHGIGTFGGLQRIEVEGKWQEAIKLIYGERDIL 416 Query: 520 YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 Y+ + SLH IS+Y G ++KLG W +QK K++++A L+++YA+R K Sbjct: 417 YLSIHSLHKISKYNGKDGAVPKIYKLGSKTWKALKQKTKAKIKEIAFNLIELYAKRRQKI 476 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 GFAF D SF +E TPDQ + A+ +DM MDRLVCGDVGFGKTEVA+ Sbjct: 477 GFAFDPDSYLQWELEASFMYEDTPDQEKTTQAIKADMESQQPMDRLVCGDVGFGKTEVAI 536 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 RAAF A DN KQV VLVPTT+LA QH+ F R PVR++ ++RFRS K++ QIL ++ Sbjct: 537 RAAFKAADNSKQVVVLVPTTILAFQHFKTFSARLKELPVRVDYLNRFRSTKDKNQILQDL 596 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 +EGKIDILIGTH+L+ +V FKDLGLLIVDEE +FGV KE+I++++ N+D+LTLTATPI Sbjct: 597 SEGKIDILIGTHQLVNKNVVFKDLGLLIVDEEQKFGVAVKEKIRSLKENIDVLTLTATPI 656 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTL ++ RDLS+IATPP R +++ V + ++R+ I+ E+ RGGQV++++N V Sbjct: 657 PRTLQFSLMAARDLSVIATPPPNRFPIESDVVRFSETLIRDGIMYELQRGGQVFFIHNRV 716 Query: 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 ENI + + + LVP+ARIAIGHGQM +LE+ + F F++L+ TTIIE G+D+P Sbjct: 717 ENIAEISGLVQRLVPDARIAIGHGQMEGTKLEKTLLSFMQGDFDILIATTIIENGLDVPN 776 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 ANTI I A++FGL+ LHQ+RGRVGRS+ +A+ + +TP AM++DAQKR++ I + Sbjct: 777 ANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPHSAMSSDAQKRIKTIEQFSAI 836 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 G+G +A DLEIRGAG+LLG EQSG + +GF Y ++L+ A+D LK L + Sbjct: 837 GSGIQIAMKDLEIRGAGDLLGGEQSGFINEMGFETYQKILQEAIDELKENEFKELYQQEA 896 Query: 1000 --------QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFG 1051 ++ +++ + +PDD++ V RLS Y+ ++ KT EL + + ++ DRFG Sbjct: 897 NDTLKSYVKEVQIDTDLELFIPDDYVNIVKERLSLYQELSQVKTSIELVDFENKMKDRFG 956 Query: 1052 LLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVN------PAWLIGLLQ 1105 LP+ A LL+ +L+ A +LGI +L + F + +L+ +Q Sbjct: 957 PLPEAALDLLESMKLKWVATQLGIERLIIKRGSCICYFISDQQSDFFQTVAFTFLLTQIQ 1016 Query: 1106 KQPQHYRLD-----GPTRLKFIQDLSERKTRIEWVRQ 1137 K P +L +L + + Sbjct: 1017 KAPDRIKLKEKNTSNGLKLLLAIQSINDIQTLTVLLN 1053 >UniRef50_Q72AT7 Transcription-repair coupling factor n=5 Tax=Desulfovibrionaceae RepID=Q72AT7_DESVH Length = 1160 Score = 970 bits (2508), Expect = 0.0, Method: Composition-based stats. Identities = 384/1148 (33%), Positives = 612/1148 (53%), Gaps = 40/1148 (3%) Query: 23 TGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-----VMNLADWETLP 77 +G A A + V++ D + ++ F+ + WE+ Sbjct: 24 SGMATAARLGNAVLDAGRSAVMVVRDAEELALARGLLTLFSPDASAGDSPLVKPRWESRW 83 Query: 78 -----YDSFSPHQDIISSRLSTLYQLPTMQ-RGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 + + ++D +SR++ L+ L + +++ V+ + ++ P H L + Sbjct: 84 VVMPQHPLGARNRDAWASRMAALFALGQKRVPQGVLITVDNFLSKLPPADLFASHELTLA 143 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 G ++ + + Q G+ V V GE A RG ++D++P G E P RL+FF + ++ Sbjct: 144 CGDEMAPELVLEQAVDWGFDRVQMVSRPGEIAVRGDIVDIYPPGYERPLRLEFFGETLEE 203 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKG 251 +R+FD +QR+L +++ + LLP ++W+ F E Y + +G Sbjct: 204 IRLFDASNQRSLGKLDEMVLLPVSPVVLSAELRSKATARWKRLFSKGMLTEEQYAGLLRG 263 Query: 252 TLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG--DLETSAERFQADTLARFENRGVD 309 G E P + E + + P + + G +L + E Q + A F+ + + Sbjct: 264 IERHG-EGLMPGAYYEAPTVVEEWLPRDAAWILPGRKELVDAVEAAQQNWEALFDKQAEE 322 Query: 310 PM---------RPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 360 R P + L+ D E V+ +P + + + PD Sbjct: 323 GGARQPRGLVLRDAAPVRQLYEEKDSAGFE-PLVMGVERTGVDMPERKLHGFVDLFPAPD 381 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 A +A + L +F+ T ++ GRR+ L L + I P + Sbjct: 382 -ARDRPWQALVAGLHRFVATHARVLLCFGNERGRRKFLK-LAEQDGITPTLRY---DPKG 436 Query: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 RG ++ G +I E D+L + R +R + L G Sbjct: 437 RGLMAVVAPYRAGVELAWDGTLVIGE-DVLQPKTDR---SARVASGAFRGLDKHEGLQPG 492 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 +VH ++GV R+ G+ ++ GG+ ++L+L YA D +LY+PV L L+ R+ G + Sbjct: 493 DLLVHRDYGVARFVGLERMDLGGVGNDFLLLEYAGDDRLYLPVDRLSLVQRFKGADDTKP 552 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 L +LGG AW ++ KA + + +AA+L+++YA R +G+ + E Y+ F SF FE Sbjct: 553 SLDRLGGGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPIGELYREFEASFGFE 612 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 TPDQA+AI VL DM +P+ MDRLVCGDVGFGKTEVA+RAAF A +QVA+L PTT+ Sbjct: 613 ETPDQARAIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTV 672 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LA+QHY FR R A +PV + M+SRF S ++QT++LA A+G +DILIGTH+LL DV+ Sbjct: 673 LAEQHYQTFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAAKGHVDILIGTHRLLSDDVRL 732 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 +LGLL++DEE RFGVRHKE++K R NVD LTLTATPIPRTL ++MSG+R+LS+I T P Sbjct: 733 PNLGLLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLSMSGIRELSVIETAP 792 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 R V T + E D ++ + REI R GQV++++N V+ +++ E + +LVP+AR+ + Sbjct: 793 PERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERTTEYVRKLVPDARVGM 852 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 HGQM ER LE M+ F H +VLVCT I+E+G+D P ANT+I+++A FGL QL+QLR Sbjct: 853 AHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQLYQLR 912 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGRS QAYA + P ++ A++R+ I ++ LGAGF +A DL IRGAG +LG Sbjct: 913 GRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVAMEDLRIRGAGNILG 972 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 E QSG M +G L++E+LE AV LK S +TE+ + +P+ +P+ +I D Sbjct: 973 EAQSGHMTRVGLELFLEMLEEAVTRLKG-----DPPRESVETELNIGIPAHIPEGYIEDA 1027 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 RL FYK ++SA ++I++E+ DR+G+ P T L + L++Q +++ +++ + Sbjct: 1028 RDRLRFYKALSSATDAAAQQDIEMEMRDRYGVFPPELETFLALLVLKRQLRRMQVQRADI 1087 Query: 1081 NEKGGVIEFAEK-NHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERK-TRIEWVRQF 1138 + + E+ V+ LI + + RL P L++ D R++ +R Sbjct: 1088 YPDKVRLVWDERQTAVDIGRLIEWVGQHADRARLQPPATLEWRLDTGLAAGARLDAMRGE 1147 Query: 1139 MRELEENA 1146 + L ++ Sbjct: 1148 LFRLVPDS 1155 >UniRef50_D2R0K5 Transcription-repair coupling factor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R0K5_9PLAN Length = 1087 Score = 967 bits (2499), Expect = 0.0, Method: Composition-based stats. Identities = 378/1112 (33%), Positives = 582/1112 (52%), Gaps = 108/1112 (9%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWE 74 E + + G++CA L A +A PV+ + P + A L +I+ F Q ++ L +E Sbjct: 39 EPATIDGVWGSSCALLAAALASADNSPVIAVLPTQREADDLAIDIALFRSQGILPLPSFE 98 Query: 75 TLPYDSFSPHQDIISSRLSTLYQLPTMQRG---------VLIVPVNTLMQRVCPHSFLHG 125 + D RL TL +L + +++ +++L+Q + L Sbjct: 99 SAIVAELGRD-DAFGPRLRTLKELLVARENPRAAATLQQLVVTSIHSLLQPMPQREVLAA 157 Query: 126 HALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFF 185 + ++K + L D L GY V GE+ RG ++DLF + P R++ F Sbjct: 158 SSRRVRKQESLEIDPFLRWLVEHGYEATTSVQLPGEFCHRGGIIDLFAHDWQRPARIELF 217 Query: 186 DDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIY 245 DDE++S+R FDV +QR+L ++ + + Sbjct: 218 DDEVESIRQFDVATQRSLGALDWVEITA-------------------------------- 245 Query: 246 QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT--LLVNTGDLETSAERFQADTLARF 303 + L G+ + Y P N+ LL + L A + A Sbjct: 246 --IPAANLAGGV--------------IADYLPPNSRILLFSPDRLSDEGRALHARSTAEA 289 Query: 304 ENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAV 363 + + V E+ S L ++ A +LG + Sbjct: 290 Q----------------LMSVAEVLSSLSSFGIAT------ADGIAAGSLGVPWHMPVES 327 Query: 364 QAQQKAPLDALRKFLETFDG--PVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR 421 Q L +R L G V+ +E + L E+ A +A + Sbjct: 328 VEQFSGDLTKVRDQLGDLAGDHEVMIITPTEAEVQRLREIFATTSLAATGRLSY------ 381 Query: 422 GRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQ 481 +IG GF L +I +L R I + +L G Sbjct: 382 ----VIGTLREGFRVPDEKLIIITGGELF----HRGELRRLPRRRLGKAIDSFLDLREGD 433 Query: 482 PVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541 VVHL HG+GR+AG+ LE G + E+L + + ++YVP + L+ +Y GG + Sbjct: 434 LVVHLAHGIGRFAGIKLLERGETSEEHLEIEFDGGTRIYVPAVRIDLVQKYVGGTKTRPS 493 Query: 542 LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFET 601 L K+GG W + ++ A V D+A E+L++ A R+A+ G AF D E + F +SFPF+ Sbjct: 494 LAKIGGKTWLKQKKAAESAVADLAVEMLELQAMRSARPGIAFSADSEWQKEFDNSFPFQE 553 Query: 602 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLL 661 T DQ +I ++ +DM + MDRL+CGDVGFGKTEVAMRAAF AVDN QVAVLVPTT+L Sbjct: 554 TVDQLTSIASIKADMQRARPMDRLLCGDVGFGKTEVAMRAAFKAVDNGYQVAVLVPTTIL 613 Query: 662 AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 721 A+QHY +F +R A +P I +SRF +++E+ + L + GK+DI++GTH+L DV F Sbjct: 614 AEQHYRSFIERMAEFPCDIAKLSRFCTSQEEREALKGIKSGKVDIVVGTHRLASQDVDFH 673 Query: 722 DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781 +LGL+I+DEE RFGV KER+KA++A VD+LTL+ATPIPRTL+M++ G+RD+S + +PP Sbjct: 674 NLGLVIIDEEQRFGVDVKERLKALKATVDVLTLSATPIPRTLHMSLVGVRDISNLESPPE 733 Query: 782 RRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 841 R+ V+T V+ +++ ++R A+LRE+ RGGQ+Y+++N V +I+ A RL ++VPEA + IG Sbjct: 734 DRVPVETSVKRWNNDLIRTAVLRELNRGGQIYFVHNRVNDIEIIARRLNQIVPEASLRIG 793 Query: 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901 HGQM E ELE+VM DF +F++L+ TTI+E+G+DIP ANTI I A+ +GLA LHQLRG Sbjct: 794 HGQMNETELEQVMVDFVAGKFDLLLATTIVESGLDIPNANTIFINEAERYGLADLHQLRG 853 Query: 902 RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961 RVGR ++A+ +LL K++T +A +RL AI ++GAGF ++ DLEIRGAG LLG Sbjct: 854 RVGRYKNRAHCYLLIDSNKSITPNAARRLRAIEEFSEMGAGFQISMRDLEIRGAGNLLGT 913 Query: 962 EQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVN 1021 +QSG + +G+ LY +LLENAV +L+ R+P + L ++ L + LP D++ D+ Sbjct: 914 QQSGHIAAVGYELYCQLLENAVRSLQ--RQPPKQQLA---VDLNLPGEAFLPSDYVDDMR 968 Query: 1022 TRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGN 1081 ++ Y+R++ + EL + + EL+DRFG P P LL + L+ A + + Sbjct: 969 LKIDLYRRLSRVGSPTELADFRSELVDRFGEPPPPVEHLLMLTGLKIDAMLWSVSSIYIE 1028 Query: 1082 EKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRL 1113 ++ V+ P L L + Q RL Sbjct: 1029 DQFVVLR-----GDAPVRLAQLAKTQKGRLRL 1055 >UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Actinomycetales RepID=B2GL97_KOCRD Length = 1254 Score = 967 bits (2499), Expect = 0.0, Method: Composition-based stats. Identities = 403/1185 (34%), Positives = 606/1185 (51%), Gaps = 89/1185 (7%) Query: 33 EIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMNLADWETLPYDSFSPHQDIISSR 91 AE HA ++ + + A L + S + + N WETLP++ SP D + R Sbjct: 69 SAAEAHAPVLLAVTATGREAEELQAALGSYLPSEQIANFPSWETLPHERLSPRSDTVGQR 128 Query: 92 LSTLYQLPTMQR-----GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLD 146 LS L +L V++ PV +++Q V + ++ GQ L +L Sbjct: 129 LSVLRRLERTDPSEQPLRVVVAPVRSVLQPVVA-GLGQMEPVTLRTGQDYDFQQLVVELA 187 Query: 147 SAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEV 206 A Y VD V GE+A RG ++D+FP + P R +FF DE+D +R F V QRTL Sbjct: 188 GAAYSRVDMVTRRGEFAVRGGIIDVFPPTEDHPVRAEFFGDELDEMRWFAVADQRTLTTA 247 Query: 207 EA---INLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPL 263 E I P E + ++ ++ ++ R+ + ++++ G G+E PL Sbjct: 248 EHPSVIVAPPCRELLITPS-VQSRAAKLKEQLPGGRE---MLERIAGGQYVEGMESLAPL 303 Query: 264 FFSEPLPPLFSYFPANTLLV---------NTGDLETSAERFQADTLARFENRGVDPM--- 311 E L + S PA ++ V DL + E F P+ Sbjct: 304 LADEMLQ-VMSLLPAGSMTVVLEPEKVRARAHDLVATNEEFLMAAWDSASGGSEAPLDLN 362 Query: 312 ------------------RPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANL 353 + + L L + + + T + ++ + Sbjct: 363 AALDTDDDAARTLSSGSFHTIAEVRDLALERSVGWWSVTGLNVNAVTTSQMDADTSDEEV 422 Query: 354 GFQKLPDLAVQAQQKAP------LDALRKFLETF---DGPVVFSVESEGRREALGELLAR 404 + + P + A+ FL D +V + G + L ELL Sbjct: 423 HLADTDADTLTVTAREPTRFSGDVPAVLSFLGERAREDWRIVLVTDGPGPLQRLSELLHG 482 Query: 405 IKIAPQRIMRLDEASDRGRY-LMIGAAEHGFVDTVRNLALICESDLLGE--RVARRRQDS 461 + R +D+A G L A GFV + +AL+ E+D+LG R + Sbjct: 483 ADVPAARYDSVDDAPQPGLVELTTARAGRGFVIEGQRIALLTEADVLGRSSTYDNRAERK 542 Query: 462 RRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGI---------TGEYLMLT 512 + LA L G VVH +HG+G++ + G EYL+L Sbjct: 543 LPQRRKRNQVDPLA-LQKGDYVVHEQHGIGQFIELVQRPIAGAMTAPGQPKPVREYLVLE 601 Query: 513 YAND------AKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAA 566 YA +L+VP L +S Y GG L K+GG W++ ++ A + V+++A Sbjct: 602 YAASKRNGPRDRLFVPTDQLDQVSTYVGGEA--PSLSKMGGADWNKTKRSAKKAVKEIAN 659 Query: 567 ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLV 626 EL+ +Y+ R A +G +F D + +FP+ TPDQ I+ V +DM +P+ MDRL+ Sbjct: 660 ELIRLYSARMASKGHSFGPDTPWQRELEQAFPYIETPDQLTTIDEVKADMERPIPMDRLI 719 Query: 627 CGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRF 686 GDVG+GKTEVA+RAAF AV + KQVAVLVPTTLLAQQH + F +RF+ +PVR+ +SRF Sbjct: 720 SGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHSETFAERFSGFPVRLATLSRF 779 Query: 687 RSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMR 746 ++AKE + + G +D++IGTH+LL +++FK+LGL+I+DEE RFGV HKE++KAMR Sbjct: 780 QTAKESKATMEGLRSGAVDVVIGTHRLLSKEMQFKNLGLVIIDEEQRFGVEHKEKLKAMR 839 Query: 747 ANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREI 806 +VD+L ++ATPIPRTL M+M+G+R+ S +ATPP R V T+V Y + V AI RE+ Sbjct: 840 TDVDVLAMSATPIPRTLEMSMTGIRETSTLATPPEERHPVLTYVGPYTNKQVSAAIRREL 899 Query: 807 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLV 866 +R GQV++++N V I+ A+ LAELVPEARIA+ HGQM E LE+++ DF ++F+VLV Sbjct: 900 MREGQVFFIHNRVSTIEAQAKELAELVPEARIAVAHGQMTESRLEQIIVDFWEKKFDVLV 959 Query: 867 CTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDA 926 CTTI+ETG+DI ANT+I++ AD +GL+QLHQLRGRVGR +AYA+ L P K ++ A Sbjct: 960 CTTIVETGLDIANANTLIVDHADRYGLSQLHQLRGRVGRGRERAYAYFLYPAEKPLSETA 1019 Query: 927 QKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDAL 986 +RL+A+A+ +LG+G LA DLEIRGAG LLG EQSG + +GF +Y+ L+ AV Sbjct: 1020 LERLKAVAAHNELGSGMQLAMKDLEIRGAGNLLGGEQSGHIAGVGFDMYLRLVGEAVAEY 1079 Query: 987 KAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVEL 1046 + +D + ++EL + + LP D++P RL Y+ IA+A TE + E EL Sbjct: 1080 RG-----DQDTGPAEMKIELPVNAHLPHDYVPGERLRLEAYRTIANAATEEAVAEAGEEL 1134 Query: 1047 IDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQK 1106 DR+G LP P LL++ARLR +A+ G+ + AE L + Q Sbjct: 1135 TDRYGPLPTPVENLLEVARLRIRARAAGLTDVATQGTMVRFSPAELTESRQMRLTRMYQG 1194 Query: 1107 QPQHYRLDGPTRLKFIQDLSERK---------TRIEWVRQFMREL 1142 R+ I + + W R+ + + Sbjct: 1195 AQVRPVPGTDERMVLIPKPKTARIGGKDLVDGDILAWAREVLDAI 1239 >UniRef50_Q6MB04 Probable transcription-repair coupling factor mfd n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MB04_PARUW Length = 1101 Score = 962 bits (2488), Expect = 0.0, Method: Composition-based stats. Identities = 367/1109 (33%), Positives = 588/1109 (53%), Gaps = 55/1109 (4%) Query: 18 LLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLP 77 L+ EL A A + A + V+++ Q RL ++S FT+ ++ WETLP Sbjct: 29 LIEELWNAPKALIAALAQQVTGKHVLILTGSSQEEARLFHDLSFFTNCPTVDFPSWETLP 88 Query: 78 YDSFSPHQDIISSRLSTLYQL-PTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 ++ P DI+ R L ++ + + +++ + +Q++ S L +K + Sbjct: 89 SENVPPSPDIVGERYQLLKKINSSSEPHIILTSLQACLQKLIAPSAFQKLYLTLKANESF 148 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 D L +L+ GY+ + GE+A RG ++D+FP+ S PYRL+F+ D+++S+R++D Sbjct: 149 FFDDLIQKLNLMGYQRKFIASDKGEFAVRGGIIDVFPVSSPDPYRLEFWGDDLESIRIYD 208 Query: 197 VDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAG 256 Q ++ VE I++ P E + E + + I+ + Sbjct: 209 PIGQISVRAVEQIDIAPGLELELLNQSNEQASFLD----YLGPETLIIFDDL-------- 256 Query: 257 IEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLP 316 L + L S N + + +Q ++ + ++ L Sbjct: 257 ------LALEDRYASLISLGANNKFFSSIEEFLHLLTPYQKMFWSQKPIEELSEVKHLDS 310 Query: 317 PQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRK 376 QS + +F +LK + + F + + + +++ + Sbjct: 311 KQSGYYSQTTIFHKLK------FQMFNRDWTVKRWRHPFNTITNYFISQEEQGDFN---- 360 Query: 377 FLETFDGPVVFSVESEGRREALGELLARIKIAP----QRIMRLDEASDRGRYLMIGAAEH 432 +++ + S +LL ++ Q+++ + + IG Sbjct: 361 -----GDEILYRLPSLSHETFRLDLLCASELEENNLRQKLLSNNIHLPKQTTYQIGYLSS 415 Query: 433 GFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGR 492 G V ++ ++L R RRQ R T + +L G+ +VHL +G+GR Sbjct: 416 GLVIQDEEWMILPLTELT-HRYKIRRQKLRSTYHTSP--AETYDLTPGEVIVHLNNGIGR 472 Query: 493 YAGMTTL-EAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWS 551 Y G+ GI E+ + YA+ AKLYVP + HLI++Y G E LH +G W Sbjct: 473 YLGIEKRANHLGILSEFFTIEYADQAKLYVPFNQAHLITKYLGSNEVIPKLHTIGSSKWK 532 Query: 552 RARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINA 611 + ++ + A++LL YA+R KEGFA+ D Q F FPF T DQ AI++ Sbjct: 533 KTKEHTERAILGYASDLLKSYAEREIKEGFAYPIDSADLQSFEGEFPFSETEDQLAAISS 592 Query: 612 VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-KQVAVLVPTTLLAQQHYDNFR 670 + DM AMDRL+CGDVG+GKTEVAMRAAF AV + KQVAVLVPTT+LA QH+DNF Sbjct: 593 IKQDMMSKKAMDRLICGDVGYGKTEVAMRAAFKAVTDGAKQVAVLVPTTVLAMQHFDNFL 652 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 DR AN+P+ I ++SRFR+ K+ + L +A G IDI+IGTH+++ DVKFKDLGL+I+DE Sbjct: 653 DRMANFPINIGILSRFRTQKQIQETLEGIANGFIDIVIGTHRIIGEDVKFKDLGLVIIDE 712 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 E RFGV+ KE +K ++ VD LTL+ATPIPRTL M++ G RD+S+I TPP RL KT + Sbjct: 713 EQRFGVKAKEHLKKIKIGVDCLTLSATPIPRTLYMSLIGARDMSVINTPPQDRLPTKTII 772 Query: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 E +++ A+LRE+ R GQ + ++N VE+I + R+ L+P+AR+ + HGQM E+ Sbjct: 773 TEPSDQIIQNALLRELSRDGQAFVIHNRVESIYSVSNRIKSLLPQARVLVAHGQMHADEI 832 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 + + F + ++LV TTI+E G+DIP ANTI+I+RADHFGLA L+QLRGRVGR + +A Sbjct: 833 DATFHAFKSGQADILVATTIVENGVDIPNANTILIDRADHFGLAALYQLRGRVGRWNRRA 892 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 YA+ L P+ + M +KRL+A++ G+G +A DLEIRGAG++LG EQSG + +I Sbjct: 893 YAYFLVPNLRVMPELTRKRLQALSEASGYGSGMKVAMRDLEIRGAGDILGLEQSGHVSSI 952 Query: 971 GFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI 1030 GF LY ++L+ + L+ +T++EL + + LP+D++ +V+ R+ Y+R+ Sbjct: 953 GFHLYCKMLKRTIQTLQGKL-----PSIVTETKIELAIDARLPEDYVNEVSLRMEVYQRL 1007 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFA 1090 A + E++ I E+ DRFG P+PA+ L + R+R A + G ++ + +E Sbjct: 1008 GEAFSLEEVDSIWSEIRDRFGPPPEPAQWLYHLTRIRVHASRFGFTLIKQEKLSLTMEKG 1067 Query: 1091 EKNHVNPAWLIGLLQKQPQHYRLDGPTRL 1119 +K L+ ++ + P L Sbjct: 1068 KKGK-------DLIIRKILMPKFKSPQEL 1089 >UniRef50_D2MMW5 Transcription-repair coupling factor n=2 Tax=Erysipelotrichaceae RepID=D2MMW5_9FIRM Length = 1142 Score = 961 bits (2484), Expect = 0.0, Method: Composition-based stats. Identities = 347/1102 (31%), Positives = 582/1102 (52%), Gaps = 34/1102 (3%) Query: 26 ACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVM-NLADWETLPYDSFSPH 84 A L+A ++ P++++ ++ A + ++ ++ F + E+L ++ + Sbjct: 35 QEALLMALSYQQKPRPMIVLKSNLYLAQQFYERLTSFLSEKECSLFGTDESLRVEAIASS 94 Query: 85 QDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQ 144 ++ + ++ TL+ L +++ + ++ + S ++ +K + S L+ + Sbjct: 95 PELSAQQVDTLFSLQKHPNQIVVTCPSAYLRFLPLPSQFKEASIHLKINEEWSIKVLKEK 154 Query: 145 LDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLE 204 L ++GY V + +A RG ++D++ + + P RL+FFD +I+S+R FD + QRT+ Sbjct: 155 LLASGYHQQAHVDQPLSFAIRGGIVDVYSINYDHPIRLEFFDTQIESIRFFDENIQRTIG 214 Query: 205 EVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP---EHIYQQVSKGTLPAGIEYWQ 261 +E + ++PA I R + E + + + + + Sbjct: 215 TIEEVEIVPASIVFFSFNQIGDIRKGIQQDLERNPNVFLQDELMTTIQAMEAHLFDKSMY 274 Query: 262 PLF-FSEPLPPLFSYFPANTLLVNTGDLET-SAERFQADTLARFENRGVDPMRPLLPPQS 319 P + F + L+ Y L ++ L + +R + DT++ + + LLP Sbjct: 275 PYYAFVPNMAGLWDYMEDAELFISDEILVNDAIKRLKEDTISYIQEMAQE--NKLLPRFD 332 Query: 320 LWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLE 379 LW ++ + + G ++ + P + L K ++ Sbjct: 333 LWHDLERSMPASRCY------------------YGDSYGDPVSHIEEVYLPNELLEKRIQ 374 Query: 380 -TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTV 438 V V ++ + + E+L KI + + +E YL GF Sbjct: 375 IAQKQRVTVFVLNKKEIQRIREILDHEKIEYRFLKEKEEIEKEALYLYEADWSQGFFLAD 434 Query: 439 RNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTT 498 + +A+ +L V R+ +I EL VVH +GVG+Y G+ T Sbjct: 435 QEVAVYTARELF--EVHHRKGRYENKFRNAEIIHAYQELEPKDYVVHANYGVGQYMGIET 492 Query: 499 LEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAA 558 E I ++L + Y +++L VP+ L+ ++ L+KLG W + + K Sbjct: 493 KEINHIKRDFLRIIYKANSELLVPLEQFRLVRKFVSREGIVPKLNKLGSGDWEKTKTKLQ 552 Query: 559 EKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQ 618 + V +VA LL++Y+ R G+AF D E+ + F D+FP++ T DQ +A+ + DM Sbjct: 553 KNVEEVATRLLNLYSSREQHIGYAFSKDTEETKKFEDAFPYDLTEDQKKAMVEIKKDMES 612 Query: 619 PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPV 678 MDRL+CGDVGFGKTEV++RA+F AV +HKQV VL PTT+LA+QH+ F++R+ ++ V Sbjct: 613 SKPMDRLLCGDVGFGKTEVSIRASFKAVIDHKQVVVLCPTTILAEQHFSTFKNRYKDFAV 672 Query: 679 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH 738 RIE++ RF +Q +IL ++ +G +DILIGTH++L DV FKDLGLL++DEEHRFGV H Sbjct: 673 RIEVLDRFVQKDKQQEILEDLEKGNVDILIGTHRVLSKDVHFKDLGLLVIDEEHRFGVEH 732 Query: 739 KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVV 798 KE+IK +R VD+L L+ATPIPRTL M++ G+R LS + TPP R +V+T+V E + ++ Sbjct: 733 KEKIKELRNGVDVLALSATPIPRTLQMSLIGVRSLSQLETPPLNRYSVQTYVVEKNQALI 792 Query: 799 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 858 +AI +E+ R GQV+YLYN++E I A L + +P+ARI + HG++ E+E +M F+ Sbjct: 793 VDAIQKELSRKGQVFYLYNNIEFIYNRARTLQKELPDARIGVVHGKLGRDEIEDIMWRFN 852 Query: 859 HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 HQ ++LV TTIIE GIDIP NTI+IE A +FGL+Q++Q++GRVGRS+ AYA+LL P+ Sbjct: 853 HQEIDILVTTTIIENGIDIPNVNTILIEDAQNFGLSQIYQMKGRVGRSNRLAYAYLLIPN 912 Query: 919 PKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMEL 978 K ++ AQKRL+A+ LG+G+ +A DL IRGAG+LLG QSG ++T+G Y+E+ Sbjct: 913 RKQLSEVAQKRLQAVKEFAKLGSGYKVAMRDLTIRGAGDLLGSSQSGFIDTVGIDFYIEM 972 Query: 979 LENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENE 1038 LE A++A R + + +++ S +P F D +L Y+RI + + E Sbjct: 973 LEAAIEA---KRNHQPIQKKEPKVKNNIQVSSYIPTGFAADDFDKLDLYQRIDALCHQQE 1029 Query: 1039 LEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAE--KNHVN 1096 LE+ K+E+ D++G LP + D L + ++ +K I F+ V+ Sbjct: 1030 LEDYKLEIKDQYGRLPKEVEMIFDKKALDIALSENHVQHYLQTDKATEITFSPLFSQSVD 1089 Query: 1097 PAWLIGLLQKQPQHYRLDGPTR 1118 L L + +L R Sbjct: 1090 GIRLFSLYSDLSKDIQLKYLNR 1111 >UniRef50_UPI0001C317DD transcription-repair coupling factor n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317DD Length = 1112 Score = 960 bits (2482), Expect = 0.0, Method: Composition-based stats. Identities = 386/1074 (35%), Positives = 578/1074 (53%), Gaps = 53/1074 (4%) Query: 22 LTGAACATLVAEIAER-HAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNLADWETLPYD 79 ++ + +VA +A++ A P++++A D + A L ++ + + V Sbjct: 27 VSQSLRPFVVAALAQQDPARPLLVVAGDDRQARDLAADMRTWLQPRPVRFYPSRGVAYES 86 Query: 80 SFSPHQDIISSRLSTLYQLPTMQ---RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 +P ++ R++ L L + V++V L ++V L H ++ G+ + Sbjct: 87 HLAPPAHLVGLRVAALDALIGERGAAAPVVVVSAVALSEKVPNP-ALRPHGFTLRVGELM 145 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 D L +AGY VDQV + G++A RG LLDL+P + R+D F DEI+SLR F Sbjct: 146 DLDESAEDLVAAGYERVDQVEDRGQFAIRGGLLDLYPATEDRAVRVDLFGDEIESLRWFS 205 Query: 197 VDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAG 256 +QR+L + E + + PA E + + + E + I + + G A Sbjct: 206 TFTQRSLGDAEEVEVSPAAELAPEHRELAEIAA-----LEDADNRPDIAELLPVGDFHA- 259 Query: 257 IEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSA--ERFQADTLARFENRGVDPMRPL 314 + P +++ + A + +Q A + D Sbjct: 260 ---------------MLDLVPDAAVMIAAEEEIAPALRDHWQDVCTAFHDTDAHD----- 299 Query: 315 LPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDAL 374 L++ + + + L R+ L + L F+ K L Sbjct: 300 -----LYVAPEAVQAALGERARIHLSS-----IDGGQPLAFRGQAADVAARGVKEAEPEL 349 Query: 375 RKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGF 434 K + + V + G + L R+K+ R + D + GF Sbjct: 350 EKLVRS-GYRTVVAFGRRGEGDRAAYNLGRMKV---RWVDGDAPRGADLAFVEARLRDGF 405 Query: 435 VDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYA 494 + LA+I E L R AR T +R+ +L G VVH +HG+ R+A Sbjct: 406 IAPGFRLAVIPEHRLFHRRPARTAGTG--TGRRRGALRSFTDLRTGDIVVHEDHGLARFA 463 Query: 495 GMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRAR 554 G T G+T +YL L YA K+++PV ISRY G ++ PL KLGG W + Sbjct: 464 GFDTKTVAGVTRDYLNLEYAGSDKVFMPVDQFAKISRYVGAGGDHPPLSKLGGRRWDTLK 523 Query: 555 QKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLS 614 +A +++A ELL++YA+R + G AF D + + F D++P+ TPDQ +AI V + Sbjct: 524 ARARRAAQEMAGELLNLYAERKRRAGHAFPPDSDWMREFEDAWPYRETPDQREAIEQVKT 583 Query: 615 DMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA 674 DM MDRL+CGDVG+GKTEVA+RAAF A ++ +QV VLVPTT+LAQQHY F +R Sbjct: 584 DMETARPMDRLICGDVGYGKTEVALRAAFKAANDGRQVMVLVPTTILAQQHYGTFAERLK 643 Query: 675 NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRF 734 ++P IE +SRFR A EQ + EG +DILIGTH+LL DV+ +DLGLLIVDEE RF Sbjct: 644 DYPFTIEHVSRFRPAAEQRAAIRAFTEGSVDILIGTHRLLSRDVRPRDLGLLIVDEEQRF 703 Query: 735 GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYD 794 GV+ KE ++ ++ VD++ ++ATPIPRTL M+++G+RD+S+I TPP R VKT+V EYD Sbjct: 704 GVKQKELLRQLKLKVDVIAMSATPIPRTLQMSIAGIRDISVIETPPEGRRPVKTYVGEYD 763 Query: 795 SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 854 +V+ AI RE RGGQ ++L+N VE I + AERL L PEAR + HGQ+ E+ LE M Sbjct: 764 EQLVKSAIERERSRGGQAFFLHNRVETIDETAERLRALCPEARFEVAHGQLDEKTLEERM 823 Query: 855 NDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL 914 F +VLV T+IIE+GIDIP ANT+++ERAD FGL+QL+Q+RGRVGRS +AYA+L Sbjct: 824 LRFLRGEADVLVATSIIESGIDIPQANTLMVERADLFGLSQLYQIRGRVGRSRERAYAYL 883 Query: 915 LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSL 974 L P A+T DA +RL A++ +LGAGF +A DLEIRGAG LLG+EQSG + +GF L Sbjct: 884 LYPSASALTADAAQRLSALSDYTELGAGFKVAMRDLEIRGAGNLLGDEQSGHVAALGFEL 943 Query: 975 YMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK 1034 YM++L+ AV + G E E+L +++ + + +P D+IP ++ ++RIA A+ Sbjct: 944 YMQMLDEAVQEM--GGEDGTEELAEP-VRLDVNVDAYVPVDYIPYEQAKIDVHRRIAGAR 1000 Query: 1035 TENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088 +EL E++ EL DRFG P+P R LL + + R + + G R + + Sbjct: 1001 EVSELHELRSELADRFGEPPEPLRNLLLLQQARIKLGEAGARAVSFRGGRLAVT 1054 >UniRef50_A1ZRM8 Transcription-repair coupling factor n=2 Tax=Bacteroidetes RepID=A1ZRM8_9SPHI Length = 1137 Score = 957 bits (2475), Expect = 0.0, Method: Composition-based stats. Identities = 368/1168 (31%), Positives = 583/1168 (49%), Gaps = 98/1168 (8%) Query: 15 EQRLLGELTGAACATLVAEIAERHAG-----PVVLIAPDMQNALRLHDEISQFTDQ-MVM 68 E+ + L G+ + + + + H +L+ D AL ++++ + + Sbjct: 29 ERVQVKGLVGSLDSVMASATYKIHTEANQRINHILVLHDRDEALYFYNDLQNLLGKKNIW 88 Query: 69 NLADWETLPYDSFSPHQDIISSRLSTLYQL----------------------PTMQRGVL 106 PY I R L ++ + ++ Sbjct: 89 FFPSSYKRPYKFMEVENANILERAEVLNRINQQISNPQVVSIDAGKANEENPTNQEGFMI 148 Query: 107 IVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRG 166 + + L+++V L + + G+++ + L L + + D V E G+++ RG Sbjct: 149 VTYPSALVEKVINKRSLLENTFTAEVGEKVDIEFLAEILHTYDFDKTDFVYEAGQFSIRG 208 Query: 167 ALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIEL 226 ++D+F ++ PYRL+FFDDE++S+R+FD +SQ ++E+V I ++P Sbjct: 209 GIVDIFSYSNDYPYRLEFFDDELESIRLFDPESQLSIEQVSQIAIIP------------- 255 Query: 227 FRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG 286 V + E + + L Y T+ V Sbjct: 256 --------------------NVQTKLVQEVRESFLNFVPNNTKVWLKDY--DATMDVIRK 293 Query: 287 DLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPT 346 A F+ + ++ P L+ +L + V+ Sbjct: 294 SFTKVANNFKEILEKSGNTQVIND------PDVLFETQASFEEKLLEFTTVEFGKRFH-- 345 Query: 347 KAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIK 406 ++ L + P + +D L++ ++ + +S + E L + + Sbjct: 346 FKSDKRLVQEAKPQPSFNKDFALLIDDLKE-RQSQGYANFIAADSLRQVERLHVIFDELD 404 Query: 407 IAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTIN 466 + + + GFVD V + + ER R R R + + Sbjct: 405 ------------PNISFEALGVSLREGFVDHVNRFVCYTDHQIF-ERFHRYRAGKRHSKS 451 Query: 467 PDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSL 526 ++ L L+ G V H+++GVGR+AG+ +EA G E + L Y +D LYV + SL Sbjct: 452 KALTMKALKALNPGDYVTHVDYGVGRFAGLEKVEANGKVQEAVRLVYRDDDLLYVSIHSL 511 Query: 527 HLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 H IS+Y+G +HKLG W +++ ++V D+A +L+++YA+R + GFAF D Sbjct: 512 HKISKYSGKDSAPPKVHKLGSPEWETKKKRVKKRVLDIAEDLIELYAKRKSAPGFAFSQD 571 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 SF +E TPDQA+A V +DM Q MDRLVCGDVGFGKTEVA+RAAF AV Sbjct: 572 SFLQAELESSFIYEDTPDQAKATADVKADMEQNSPMDRLVCGDVGFGKTEVAIRAAFKAV 631 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 + KQVA+LVPTT+LA QHY F++R +P IE I+RF+++K+ L EV EGK+DI Sbjct: 632 YDGKQVAILVPTTILALQHYKTFKNRLEKFPCNIEYINRFKTSKQIKATLKEVNEGKVDI 691 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 LIGTH+++ DV+FKDLGLL++DEE +FGV+ KER+K MR NVD+LTLTATPIPRTL+ + Sbjct: 692 LIGTHRIVNKDVQFKDLGLLVIDEEQKFGVKTKERLKEMRVNVDVLTLTATPIPRTLHFS 751 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 + G RDLSII TPP R V T ++ V+R+AI E+ RGGQV++++N V++I A Sbjct: 752 LMGARDLSIIQTPPLNRQPVTTEQHTFNDEVIRDAISFELRRGGQVFFVHNRVKDIISIA 811 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 + +LVP+A + + HGQM +LE+ M F ++VL+ T IIE G+D+P ANTIII+ Sbjct: 812 NNVLKLVPDAHVGVAHGQMEGPKLEKTMMKFIEGEYDVLISTNIIEAGLDVPNANTIIID 871 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 A FGLA LHQ+RGRVGRS+ +AY +LL P + ++++RL A+ DLG GF +A Sbjct: 872 MAHTFGLADLHQMRGRVGRSNRKAYCYLLAPASTLLNVESRRRLSALEEFSDLGDGFKIA 931 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLT------SQ 1000 DL+IRGAG LLG EQSG + +GF +Y ++L+ A+ LK + L + Sbjct: 932 MRDLDIRGAGNLLGAEQSGFISDLGFEMYHKVLDEAIQELKETKFRELFESELAIKEIKT 991 Query: 1001 QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTL 1060 +E + L+P++++ ++ RLS Y + + K EL + K+ + DRFG P L Sbjct: 992 DCVIETDLAILIPENYVTNITERLSLYTTLDNIKETEELNKFKISVQDRFGNPPSEVNDL 1051 Query: 1061 LDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKN-----HVNPAWLIGLLQKQPQHYRLDG 1115 ++ +LR +A++LG+ KL F +N +I LQ+ PQ RL Sbjct: 1052 IETVKLRWEAERLGMTKLTLKNGAMKGYFNSENDDYFKSDTFGKIIRYLQQNPQKTRLKE 1111 Query: 1116 PTRLKFIQDLSERKTRIEWVRQFMRELE 1143 + I I+ + ++ Sbjct: 1112 HKQKPIIIFAEVNS--IQQAISILSSIK 1137 >UniRef50_C5VMF4 Transcription-repair coupling factor n=2 Tax=Prevotella RepID=C5VMF4_9BACT Length = 1178 Score = 957 bits (2475), Expect = 0.0, Method: Composition-based stats. Identities = 371/1182 (31%), Positives = 595/1182 (50%), Gaps = 83/1182 (7%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-------- 63 K+ L L +A A IAER V + D A ++++ Sbjct: 26 KSIRTVFLQGLVASAAPMFFASIAERWKTTTVFVLNDNDEAGYFYNDLKTIAMPADGEGK 85 Query: 64 DQMVMNLAD--WETLPYDSFSPHQDIISSRLST-LYQLPTMQRGV----LIVPVNTLMQR 116 V+ + Y +I+ + + T L L + ++ + L + Sbjct: 86 VAEVLFFPSSYRRAVKYGQRDAGNEILRTEVLTRLSALASDADNALPLYIVTEPSALSEL 145 Query: 117 VCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176 V L L + Q + + L S G+ D V E G++A RG+++D++ + Sbjct: 146 VVSKKQLDERRLTLTVDQHIDIVEVEKTLRSFGFTETDYVYEPGQFAVRGSIIDVYSFSN 205 Query: 177 ELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE 236 ELP+R+DFF D+I+++R F+V++Q + E++ + ++P + + + D Sbjct: 206 ELPFRIDFFGDDIETIRNFEVETQLSTEKLTRVEIVP-ELTTMSEEKVPFLQFLPEDAVL 264 Query: 237 VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQ 296 +D ++ + +Q F ++ L T LE E Q Sbjct: 265 AFKDFLYVRDAIDN--------IYQEGFTNQAL---------------TEKLEGKTELEQ 301 Query: 297 ADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQ 356 + F G L P S W+ F ++ + A + F Sbjct: 302 RELEVAFRKEGQ------LVPASRWMNDALDFRRIEFGINYSSSDLAKKKDGSRATINFS 355 Query: 357 KLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGEL---LARIKIAPQ-RI 412 P LR +L +F+ +SE + L ++ L+ ++P Sbjct: 356 TSPQPLFHKNFDLLSKTLRDYLIKGYKLYIFA-DSEKQTVRLRDIFDSLSDTNVSPDSEN 414 Query: 413 MRLDEASDRGRYLMIGAA---------EHGFVDTVRNLALICESDLLGERVARR--RQDS 461 + + E S G+ +GA GFVD+ + + + +R + + D Sbjct: 415 LSVAELSGEGQDATVGALPFTPVNRTLHEGFVDSTLKVCFFTDHQIF-DRFHKYNLKSDK 473 Query: 462 RRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYV 521 R ++ L E+ G +VH++ G+G++AG+ + AG E + L Y ++ + V Sbjct: 474 ARQGKMALTMKELQEMEPGDFLVHVDFGIGKFAGLVRVPAGDSYQEMIRLVYQHNDIVDV 533 Query: 522 PVSSLHLISRYA-GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEG 580 + SL+ IS+Y G + E L LG AW R ++KA ++++D+A +L+ +YA+R ++G Sbjct: 534 SIHSLYKISKYRRGDSGEPPRLSVLGSGAWDRLKEKAKKRIKDIARDLIKLYAKRRREKG 593 Query: 581 FAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMR 640 FAF D SF +E TPDQ +A + DM MDRLVCGDVGFGKTEVA+R Sbjct: 594 FAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKTEVAIR 653 Query: 641 AAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA 700 AAF A ++KQVAVLVPTT+LA QHY F+ R + PVR++ +SR RSAK+ Q+L ++A Sbjct: 654 AAFKAAVDNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDYLSRARSAKQTKQVLEDLA 713 Query: 701 EGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIP 760 EGKIDIL+GTHKL+ VK+ DLGLLI+DEE +FGV KE+++ ++ NVD LT++ATPIP Sbjct: 714 EGKIDILVGTHKLIGKSVKWHDLGLLIIDEEQKFGVSTKEKLRQLKTNVDTLTMSATPIP 773 Query: 761 RTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVE 820 RTL ++ G RD+SI+ TPP R ++T + + V+ +AI E+ R GQVY++ + + Sbjct: 774 RTLQFSLMGARDMSIMRTPPPNRYPIQTEIASFSHEVIADAINFEMSRNGQVYFVNDRIS 833 Query: 821 NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880 N+ + A + + VP RIAIGHGQM+ ELE ++ F + ++VL+ TTI+E GIDI A Sbjct: 834 NLPEIANLIKKYVPNCRIAIGHGQMKPEELEEIVMGFMNYDYDVLLSTTIVENGIDISNA 893 Query: 881 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLG 940 NTIII A FGL+ LHQ+RGRVGRS+ +A+ +LL P A+ +A++RLEA+ + DLG Sbjct: 894 NTIIINDAHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNPEARRRLEALETFSDLG 953 Query: 941 AGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ 1000 +GF LA DL+IRGAG LLG EQSG ME +G+ Y ++L AV LK L + Sbjct: 954 SGFNLAMQDLDIRGAGNLLGSEQSGFMEDLGYETYQKILNQAVMELKNDEFQDLYEEEMD 1013 Query: 1001 Q------------TEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELID 1048 + VE + PD+++P + R+ Y+ + + + + +L+ + L D Sbjct: 1014 EGKQITGDDFIDDCAVESDLEMYFPDNYVPGSSERMLLYRELDNIEKDEDLDAYRKRLQD 1073 Query: 1049 RFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH------VNPAWLIG 1102 RFG +P L+ + LR+ ++LG K+ + ++F + ++ Sbjct: 1074 RFGPVPRQGEELMQVVALRRVGKRLGCEKIILKQGRMQMQFVSNPNSVYYQSAAFDKVLN 1133 Query: 1103 LLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 + P+ L K +S+ KT E V+ +R +E+ Sbjct: 1134 YIGYHPRRCNLK-ERNGKRSMVVSDVKTVGEGVK-VLRAIEQ 1173 >UniRef50_B8DPF5 Transcription-repair coupling factor n=6 Tax=Desulfovibrionales RepID=B8DPF5_DESVM Length = 1197 Score = 957 bits (2473), Expect = 0.0, Method: Composition-based stats. Identities = 387/1128 (34%), Positives = 599/1128 (53%), Gaps = 47/1128 (4%) Query: 23 TGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLAD---------W 73 +G A +A R VV++ D + F+ ++ W Sbjct: 47 SGMGGAARLALALMRAGRDVVMVVRDAAELAEARALTTLFSPELSGTDPAVTQARWDAQW 106 Query: 74 ETLP-YDSFSPHQDIISSRLSTLYQLPTMQ--RGVLIVPVNTLMQRVCPHSFLHGHALVM 130 P + + + + ++R+++LY L + RG++I V+ L+ ++ P H L + Sbjct: 107 IVFPQHPAGTRGRGAWAARMASLYALSRREHPRGIII-SVDNLLPKLPPVDIFEHHELRL 165 Query: 131 KKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEID 190 +G+ +S + + Q G+ V GE A RG +LD+FP G E P RL+FF D ++ Sbjct: 166 ARGEDMSPELVLDQAIDWGFERAQMVSRPGEAARRGDILDIFPPGYEKPLRLEFFGDTLE 225 Query: 191 SLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE---VKRDPEHIYQQ 247 +R+FD SQR+L +E LLP + E +W+ + + + + Sbjct: 226 DIRLFDATSQRSLASLEEFRLLPVAPVVGCREYREAAARRWKQLRKDGVIDGEQAAALAR 285 Query: 248 VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG--DLETSAERFQADTLARFEN 305 +++G + P + E + + P + + + DL T+ E + + A + Sbjct: 286 MAEGEVTG----LLPGAWYENATWMEDWLPRDAVWLLPDRADLSTALEAARTNWEALLD- 340 Query: 306 RGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDL---- 361 R D R P + DE + + + + + +L ++L Sbjct: 341 RQYDEHRLRQPRPLVLRDADEAQAAWRGRSVAHFERLVMGVERTGVDLPERRLHAFRDLF 400 Query: 362 ----AVQAQQKAPLDALRKFLETFD---GPVVFSVESEGRREALGELLARIKIAPQRIMR 414 +V + P L L + VV S S+ R +L + + P Sbjct: 401 AATPSVPVDEDRPWQRLVTALRQWTSERRQVVLSFASDRSRRKFLKLAEQDGVRPNLRYS 460 Query: 415 LDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNL 474 +DRG Y ++ G N+ +I E D+L + R+ + + Sbjct: 461 ---PADRGLYALVAPFRAGIDLAWDNVLVIGE-DVLQPKADRQPRVPTGAF---LGLDKY 513 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG 534 +L G +VH ++GVGR+ G+ ++ GG+ ++L+L YA + +LY+PV L LI R+ G Sbjct: 514 DDLSPGDLLVHRDYGVGRFGGLHRMDLGGVANDFLLLEYAGEDRLYLPVDRLSLIQRFKG 573 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 G + L KLGG W + KA + + +AA+L+ +YA R +G+ + E Y+ F Sbjct: 574 GDDSVPSLDKLGGSGWRACKDKARKAIEKIAADLVQMYAYRKVAKGYRYGPLGELYREFE 633 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 SF FE TPDQA+AI VL DM +P MDRLVCGDVGFGKTEVA+RAAF A +QVA+ Sbjct: 634 ASFGFEETPDQARAIQDVLDDMEKPEPMDRLVCGDVGFGKTEVALRAAFRAAAEGRQVAL 693 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 L PTT+LA+QHY FR R A +PV + M+SRF S ++Q ++L A G+IDILIGTH+LL Sbjct: 694 LCPTTVLAEQHYQTFRSRLAGFPVNVGMLSRFVSRQKQKEVLQAAARGQIDILIGTHRLL 753 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 DV+ +LGLL++DEE RFGVRHKE++K R NVD LTLTATPIPRTL ++MSG+R+LS Sbjct: 754 SDDVQLPNLGLLVLDEEQRFGVRHKEKLKKFRKNVDALTLTATPIPRTLQLSMSGIRELS 813 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 +I T P R V T + E D +R+ + REI R GQV++++N V+ +++ AE + LVP Sbjct: 814 VIETAPPERKPVATALIERDQNALRQILEREIAREGQVFWVHNRVQGLERVAEFVRGLVP 873 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 AR+ + HGQM ERELE M+ F H +VLVCT I+E+G+D P ANT+I+++A FGL Sbjct: 874 TARVGMAHGQMGERELEDTMHKFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLG 933 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QL+QLRGRVGRS QAYA + + + A++R+ I L+ LGAGF +A DL +RG Sbjct: 934 QLYQLRGRVGRSDRQAYAVFVVSDAERLPEQARQRMRIILELDYLGAGFQVAMEDLRLRG 993 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPD 1014 AG +LGE QSG M +G LY+E+LE V LK S + E+ + + + +P+ Sbjct: 994 AGNILGEVQSGHMTRLGLDLYLEMLEEEVARLKGA-----PPRESVEPELNIGLAAHIPE 1048 Query: 1015 DFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 +I D RL FYK ++SA L+++++EL DRFG P R L + L++ L Sbjct: 1049 TYIGDARERLKFYKALSSAPDAATLQDVEMELRDRFGPCPPELRNFLAVLVLKRFLATLQ 1108 Query: 1075 IRKLEGNEKGGVIEFAEKNH-VNPAWLIGLLQKQPQHYRLDGPTRLKF 1121 + + + + + + + E+ + P L+ + + RL P+ L+ Sbjct: 1109 VVRADIHPERLRLVWDERQTVIAPERLVAWVAARQGKARLVPPSTLEV 1156 >UniRef50_A4E9V3 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E9V3_9ACTN Length = 1210 Score = 955 bits (2469), Expect = 0.0, Method: Composition-based stats. Identities = 339/1125 (30%), Positives = 547/1125 (48%), Gaps = 56/1125 (4%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMN 69 + AGE L ++ + + A R P V I A R ++ + V Sbjct: 23 LDAGEDVTLA-VSQSGRTLMAAAQFARRPRPTVYIVSGEDAADRAARSLAAYVGLAHVCR 81 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 + + P+ +P +++ R L ++ +++ L++ V P + + Sbjct: 82 FPERKDYPWREQAPDDAVVAQRCEALGRIVRGDNCIMVASARALLRCVPPVESRYWESTT 141 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 G+ + D + +L GY + G + G +++FP + P R++FF DEI Sbjct: 142 FAVGEEIPFDEVPQRLVGMGYTNAGAADAPGLFRVHGDTVEVFPAQEKAPVRIEFFGDEI 201 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVS 249 D +R + +T+ ++I + P E A+ + + + V Sbjct: 202 DRIRRMVSSTGQTIGNEDSIEIFPCRELALTDEAVHNMHVALYRASQDDSKLAALLEMVD 261 Query: 250 KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN------------TGDLETSAERFQA 297 + ++ + P+ + + + PL ++++ D+E A Sbjct: 262 ARIVTPELDRFLPVMYGQTVSPLAHVSGKALVVLSEPRSLFDDCLRAYEDIEARAGEAGI 321 Query: 298 DTLARFENRG--------------------------VDPMRPLLPPQSLWLRVDELFSEL 331 D L R + +P + Sbjct: 322 DRLDGLYVRAQQLDFGAQQRLNYVSLIRAGGAVTAELKIEQPAIAGSDNRFMTRVQEVVG 381 Query: 332 KNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVES 391 K + V + ++ G + + + + + Sbjct: 382 KRYACVFAIPDRGARESMELTFGDEGITFEESLTAAPENAGVIGERVRVAAADSADRAAR 441 Query: 392 EGRREALGEL---------LARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLA 442 + A+ E L + S + A G V NLA Sbjct: 442 QDAHAAIRERKADALNARSLEAGAAQAAAGAAVPTISRGRVTFVDAALPQGVVVPDANLA 501 Query: 443 LICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAG 502 + +DL R+ R SRR ++ + G VVH HG+ ++ + E G Sbjct: 502 VFSIADL-NARMDANRARSRRKVDITQITFPF---KPGDYVVHATHGIALFSEIARQEVG 557 Query: 503 GITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVR 562 G +Y +L YA+ KLYVP+ + I+RY G + L +L W+RA KA + + Sbjct: 558 GKERDYFLLEYADGDKLYVPLEQVDRITRYVGPDGDKPRLTRLNTADWTRATNKARKNAK 617 Query: 563 DVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAM 622 +A +L+D+Y +R++ G A D + +SFP++ T DQ +AI + +DM P M Sbjct: 618 KLAFDLVDLYTRRSSITGIACPPDTPEQIEMEESFPYDETRDQLEAIADIKADMEAPKPM 677 Query: 623 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM 682 DRL+CGDVGFGKTEVA+RAAF VD+ +QV VL PTT+LAQQHY+ F +RFA + + +E+ Sbjct: 678 DRLLCGDVGFGKTEVALRAAFKCVDSGRQVMVLCPTTILAQQHYETFFERFAPFGLEVEV 737 Query: 683 ISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERI 742 +SRFR+ +Q + L AEG ID+LIGTH+LL +DV K+LG++I+DEE RFGV+HKE++ Sbjct: 738 LSRFRTPAQQKRALKAFAEGTIDVLIGTHRLLSADVNPKNLGMVIIDEEQRFGVQHKEQL 797 Query: 743 KAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAI 802 K +R +D+LTL+ATPIPRT+ MA SG+RD+S+I TPP R V V EYD VV AI Sbjct: 798 KNLREQIDVLTLSATPIPRTMQMATSGVRDMSLITTPPTGRRPVIVHVGEYDPDVVSAAI 857 Query: 803 LREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRF 862 E+ RGGQVYY+ N V+ I A R+ E PEAR+ + HG+M RE+E VM +F ++ Sbjct: 858 RLEVGRGGQVYYVSNRVKTIDDAVARVHEAAPEARVGVAHGKMSPREVEDVMIEFATKKI 917 Query: 863 NVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAM 922 +VL+ TTI+E+GID TANT+IIE + GLAQL+QL+GRVGRS QAYA+ + P + Sbjct: 918 DVLIATTIVESGIDNATANTLIIEDSQRLGLAQLYQLKGRVGRSATQAYAYFMFPGELPL 977 Query: 923 TTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENA 982 T +A RL A++ +DLG+G +A DLEIRGAG L+G EQ G++ ++GF L+ ++L A Sbjct: 978 TEEATARLTALSEFQDLGSGMRIAMRDLEIRGAGSLMGAEQHGNLSSVGFDLFTQMLGQA 1037 Query: 983 VDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEI 1042 V + + +E + + L L ++++P V+ R+ Y+++A+A+ ++E+ Sbjct: 1038 VAEARGDDDAGVE---AASVGINLPADYFLSEEYLPAVDQRVLVYRKLAAAEDLESIDEV 1094 Query: 1043 KVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVI 1087 + E G LP L + AR+R + ++LG+ + + Sbjct: 1095 QEETEAAHGELPLAGLNLFNRARIRIRGERLGLESVTLSGGRITF 1139 >UniRef50_C9LF18 Transcription-repair coupling factor n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LF18_9BACT Length = 1143 Score = 953 bits (2463), Expect = 0.0, Method: Composition-based stats. Identities = 349/1138 (30%), Positives = 564/1138 (49%), Gaps = 73/1138 (6%) Query: 31 VAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLAD--WETLPYDSFSPHQDI 87 + + + ++ +A D + A + ++ Q + V + Y DI Sbjct: 52 LRANLKNNCPTLLFVADDEETAGYFYHDLIQLLGEADVFFYPSMFKRAVKYGQRDAANDI 111 Query: 88 ISSRLSTLYQLPTMQRG--VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 + R L +L + ++ L RV + + +V+++ AL +L Sbjct: 112 L--RTEVLDRLASQNPAGTCIVTFPAALATRVAAKADMAAKTIVIEEEGHYDLTALEERL 169 Query: 146 DSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEE 205 G++ D V E G++A RG++LD++ SE P+R+DFF D++DS+R F+V +Q + E Sbjct: 170 LEFGFKRKDYVYEPGDFAVRGSILDVYSFASEFPFRIDFFGDDVDSIRSFEVQTQLSKER 229 Query: 206 VEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFF 265 ++A+ ++P + T + + + R+PE+I ++ + Sbjct: 230 LQAVTIVPDVD-ATGGDNVAFTDYLPESSLVITREPEYIRDVINN-------------IY 275 Query: 266 SEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVD 325 E + ++ + + + L ++ D Sbjct: 276 DEG-------------FTREAAMSGEWAAYEGERDTDLPQADLPTPQAEPDKAKLLVKGD 322 Query: 326 ELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPV 385 E++ L+ +P L P A A + F P A +L+ + + Sbjct: 323 EIYDRLRAFPNFLLAQGTTP---AAAKIQFHTTPQPIFHKNFDLVQRAFSDYLDQ-NYTI 378 Query: 386 VFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALIC 445 + +S +++ L ++LA GF D + Sbjct: 379 YITADSRKQQQRLADILAEKGGNSTFTPVDQT------------LHAGFSDENLRICCFT 426 Query: 446 ESDLLGERVARR--RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLE-AG 502 + + +R + R D R + L + H G +VHL+HGVGR+AG+ + A Sbjct: 427 DHQIF-DRYHKYSLRSDHARDAKMALTLNELLQFHPGDYIVHLDHGVGRFAGLVRVPAAD 485 Query: 503 GITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVR 562 G E + LTY +D + V + +LH +S+Y G L +LG AW + + + +K++ Sbjct: 486 GSQQEMIKLTYQHDDIVLVSIHALHKLSKYKGREGTPPHLSRLGTGAWEKMKDRTKKKIK 545 Query: 563 DVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAM 622 D+A L+ +Y+QR ++G+AF D Q SF +E TPDQ + V +DM M Sbjct: 546 DIARNLIKLYSQRKEEKGYAFSADSFLQQELEASFTYEDTPDQLKVTQEVKADMESLRPM 605 Query: 623 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM 682 DRLVCGDVGFGKTE+A+RAA A ++KQVAVLVPTT+LA QHY F +R +PVR+ Sbjct: 606 DRLVCGDVGFGKTEIAVRAALKAAVDNKQVAVLVPTTVLALQHYRTFAERLKGFPVRVAY 665 Query: 683 ISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERI 742 +SR +SAKE IL ++AEG I+I++GTHKL+ V+F+DLGLLI+DEE +FGV KER+ Sbjct: 666 LSRAKSAKETKSILHDLAEGHINIIVGTHKLIGKTVRFQDLGLLIIDEEQKFGVAVKERL 725 Query: 743 KAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAI 802 + ++ NVD LT++ATPIPRTL ++ G RDLS+I TPP R ++T + ++ ++ EA+ Sbjct: 726 RELKVNVDTLTMSATPIPRTLQFSLMGARDLSVIQTPPPNRRPIQTEIHTFNHEIIAEAV 785 Query: 803 LREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRF 862 E+ R GQV+ + N V ++ + + VP+AR+ +GHGQM ELE+++ DF + + Sbjct: 786 NFEMSRNGQVFIVTNRVASLGSLKALVEKYVPDARVVVGHGQMAPAELEKIILDFVNYDY 845 Query: 863 NVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAM 922 +VL+ TTI+E GIDIP ANTI+I+ A FGL+ LHQ+RGRVGRS +A+ +LL P + Sbjct: 846 DVLISTTIVENGIDIPNANTILIDAAHTFGLSDLHQMRGRVGRSSQKAFCYLLAPPLSIL 905 Query: 923 TTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENA 982 DA++RL+AI DLG+G +A DL+IRGAG LLG EQSG + +G+ Y ++L A Sbjct: 906 KDDARRRLQAIEEFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGFIADLGYETYQKILAEA 965 Query: 983 VDALKAGREPSLE-----------DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIA 1031 V LK+ L D + VE + + P+ ++P R+ Y+ + Sbjct: 966 VSELKSEEFADLYADSLKKTNLTGDFFVDECNVECDLHAFFPETYVPGATERMMLYRELD 1025 Query: 1032 SAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAE 1091 +++L + + DRFG LP LL I LR+ +KLG K+ ++ + F Sbjct: 1026 GLTADDQLAAFRKRMEDRFGKLPPEGDELLAIVPLRRSGRKLGAEKITLKQRRMTLYFIS 1085 Query: 1092 KNHVN------PAWLIGLLQKQPQHYRLD--GPTRLKFIQDLSERKTRIEWVRQFMRE 1141 K LI + L G R I+D+ + ++ Sbjct: 1086 KTDSPFYKSATFDRLIAFATTNFRRCELKESGGKRRMIIKDIGSVGQALNLLQSLTGN 1143 >UniRef50_A2BWG1 Transcriptional-repair coupling factor n=11 Tax=Prochlorococcus marinus RepID=A2BWG1_PROM5 Length = 1175 Score = 952 bits (2462), Expect = 0.0, Method: Composition-based stats. Identities = 327/1110 (29%), Positives = 588/1110 (52%), Gaps = 41/1110 (3%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL 70 ++ ++ + + A + ++ +A++ ++L++P+ + A + + + ++ ++ Sbjct: 23 IEKNKELNIIGSSRYAKSIIINSLAKKENKNIILVSPNEEIAYKWYGYFNSIGNRNILYY 82 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQLPTM---QRGVLIVPVNTLMQRVCPHSFLHGHA 127 + LPY S + ++ S+LS + +L ++ ++I +L + + Sbjct: 83 PPSKNLPYGSINKSKETEYSQLSVISKLINNDKEEKNIIITTERSLQPHLIKKNIFKQKI 142 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 + + KG + L +QL S GY + + G ++ RG ++D++P+ +ELP R++FFD+ Sbjct: 143 ITLNKGLAIEIKELTSQLVSLGYNKENLTSQEGSWSRRGEIIDIYPVNNELPIRIEFFDN 202 Query: 188 EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 247 ID +R +D +QRTL+ + + ++ + +EL E + E I Sbjct: 203 IIDKIREYDPVTQRTLDSINKVEIVQVGYNSLIREKLELLSD------EGVFNSEEI--- 253 Query: 248 VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQADTLARFEN 305 T ++ + + E L +Y ++++V D A + +++ F++ Sbjct: 254 ----TTKNNLDRYLGII-EEYPSNLINYINEDSIIVIDEIDDCTKFANNWYIESVNNFDH 308 Query: 306 RGVDPMRPLLPPQ-------SLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKL 358 + + L +L + + + ++ + L N L Sbjct: 309 FKDEITQNLRSNNINIKVKPNLHEKFEYILKTFSDFIVINLYEFESKRNLDNRFL-LSDK 367 Query: 359 PDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGEL--LARIKIAPQRIMRLD 416 + + KF+ D + S + R L E P + Sbjct: 368 RINSSSKNIGKLSKEINKFILNKDKVWILSAQPLRTRSLLFEHDCNTNYLEKPNDLDNAY 427 Query: 417 EASDRGRYLMIGAAE----HGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIR 472 + D ++I GF + + LI + +L ++ RR Sbjct: 428 KLIDIPTPVIIKNKNNYEIEGFYLPIWKIILITDKELFSQQALFNNVFIRRRKRSVNSNI 487 Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 N+ +++ G +VH HG+G++ + + G + +YL++ Y + K+ V L I+RY Sbjct: 488 NVNKINPGDYIVHKNHGIGQFLKLEKINITGESRDYLVIKYLDG-KISVAADQLGSINRY 546 Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 + ++KLGG W + + K + ++ VA ++L +YA+R +G + D + Sbjct: 547 RSTGKIMPKINKLGGAEWLKIKDKNRKIIKKVAYDILKLYAKREKLKGHIYPEDGPWQKE 606 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 +SFP++ TPDQ A+ + DM MDRLVCGDVGFGKTEVA+RA F A+ + KQV Sbjct: 607 LEESFPYQPTPDQLTAVKEIKIDMESDKPMDRLVCGDVGFGKTEVAVRAIFKAITSGKQV 666 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 +L PTT+LAQQH+ F +RF+ +P+++ +++RF+++ E+ I A + KID+++ TH+ Sbjct: 667 ILLAPTTILAQQHWRTFNNRFSPYPIKVSLLNRFKTSSEKKDIYAGLKNNKIDLVVATHQ 726 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 +L +++ K+LGLL++DEE RFGVR KE+IK ++ N+D+LTL+ATPIPRTL M++SG+R Sbjct: 727 ILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIPRTLYMSLSGLRQ 786 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 832 +S++ TPP R ++KT++ E D V+R AI +E+ RGGQ++Y+ + +I +A +L + Sbjct: 787 MSLLNTPPPSRRSIKTYLSEIDMDVIRTAISQELDRGGQIFYVLPRISDIDQAVNKLTNM 846 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 + + + HGQM E +LE M F++ ++++CTTIIE+G+DIP NTIIIE + FG Sbjct: 847 FNDLKFIVAHGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIEDSHKFG 906 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 L+QL+QLRGRVGRS QA+AWL P+ + +++RL+AI +LG+G+ LA D+EI Sbjct: 907 LSQLYQLRGRVGRSGIQAHAWLFYPNLNNINEASKQRLKAIKDFSELGSGYQLAMKDMEI 966 Query: 953 RGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLL 1012 RG G LLGEEQSG + IG+ LY+E+L A+ + P ++D T+V+L + + + Sbjct: 967 RGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEINGQEIPEVKD-----TQVDLPINAFI 1021 Query: 1013 PDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 P +I + +L YK T EL E+ + +R+G+LP P +L+ + +L+ A+K Sbjct: 1022 PATWILNREEKLDAYKEATECNTHKELTELATDWSNRYGVLPKPVESLILLMKLKLLAKK 1081 Query: 1073 LGIRKLEGNEKGGVIEFAEKNHVNPAWLIG 1102 G K++ + +IE + ++ LI Sbjct: 1082 CGFNKIKLKKPNIIIE--TRLKISTFKLIK 1109 >UniRef50_C6HVP9 Transcription-repair coupling factor n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVP9_9BACT Length = 1145 Score = 949 bits (2453), Expect = 0.0, Method: Composition-based stats. Identities = 378/1073 (35%), Positives = 579/1073 (53%), Gaps = 41/1073 (3%) Query: 30 LVAEIAERHAGP--VVLIAPDMQNALRLHDEISQFT-----DQMVMNLADWETLPYDSFS 82 L+ + R P + ++ + ALRL +EI + V+ + E LPY+ S Sbjct: 39 LLPGLLRRAGRPEILWVLTSTPEKALRLVEEIRSAPLLLDMEPDVLLFPEEEVLPYERES 98 Query: 83 PHQDIISSRLSTLYQLPTM-QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDAL 141 P I + R+ L +L + V++ PV ++++ L ++ G ++ Sbjct: 99 PADFIRAERIHALDRLASDTPPDVVVSPVVAVLRKTLSPPLLKSVRRTLRTGMEEDPQSV 158 Query: 142 RTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR 201 L + GY V QV GE++ RGAL+DL+ P RL++ D EI S+R FD ++QR Sbjct: 159 VETLLAQGYVRVPQVTAPGEFSVRGALVDLYSTDRRRPVRLEWDDLEIRSIRSFDPNTQR 218 Query: 202 TLEEVEAINLLPAHEFPTD-KAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYW 260 ++E V ++LLP+HE+ T ++++ W D P GIE + Sbjct: 219 SVEAVGEVDLLPSHEWITPSPSSLDTPSRDWIDRHLSLP-------------FPPGIERY 265 Query: 261 QPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSL 320 P FFSE P+ +L+ D + +R +D ++R E + L + Sbjct: 266 LPSFFSETAAPV---LSRPDILILVDDWKAVLDRT-SDWISRIEE----GWKVLPAEERS 317 Query: 321 WLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKF-LE 379 +L + L + T + A G L A+ L + + + Sbjct: 318 FLPAPDAAFFLPKSRQEWESLLPCLTVSDEAPEGTPSLLGSVPSARIDRNLSLISEIERQ 377 Query: 380 TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG----RYLMIGAAEHGFV 435 + V + G+ +G++L ++ I D + L+ G E F Sbjct: 378 PREWRTVIFCRTRGQMSRIGDMLEAGELP--YITSFDSLASGAGRLPVTLLQGDVEEAFE 435 Query: 436 DTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAG 495 + + ++ ++ L ++ R + + R+ G VVHL G+GR+ G Sbjct: 436 LPLDQILVLSDTWLF-KKPVSRPPFRSFSTSTQVYRRDRPTFADGDYVVHLHQGIGRFRG 494 Query: 496 MTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQ 555 + + G GE+ ++ Y + Y+ V + + Y G + +LGG +WS+ + Sbjct: 495 LQEVSVGANRGEFAVIEYLGGDRFYLSVDQMDQLLPYQGPEGSAPRIDRLGGKSWSQTKS 554 Query: 556 KAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSD 615 + ++V ++A+L+ +YA+R A EGFAF + + F SFP++ T DQ +AI AVLSD Sbjct: 555 RVRKQVEKISADLVMLYARRKAAEGFAFSPESILTREFDQSFPYDLTTDQEEAIQAVLSD 614 Query: 616 MCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 M P MDRL+ GDVGFGKTEVAMRAA AV + KQVAVLVPTTLLA QH++ F++RFA Sbjct: 615 MESPTPMDRLILGDVGFGKTEVAMRAAIRAVADGKQVAVLVPTTLLALQHHETFKNRFAG 674 Query: 676 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFG 735 +PVRIE +SR S EQ + + G+ DI++GT LL + V+F+DLGLLI+DEE RFG Sbjct: 675 FPVRIESLSRMVSPAEQKLVRERLRRGETDIVVGTTALLANAVEFRDLGLLIIDEEQRFG 734 Query: 736 VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDS 795 VR KE + + NVD LTL+ATPIPRTL MAMSG++ +S I TPP R A+KT + +D Sbjct: 735 VRQKENLASRFPNVDRLTLSATPIPRTLQMAMSGLKGISFIMTPPQGRKAIKTAIMRFDR 794 Query: 796 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMN 855 +RE I RE+ R GQV++++N V +I + A LA L PEA +A HGQM E E+E VM Sbjct: 795 ERIREVIDRELAREGQVFFIHNRVSSIARWARYLAALFPEAGVAYAHGQMGEEEIEAVMG 854 Query: 856 DFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLL 915 F + +LV TTI+E+G+DIP ANTI+I RAD FG+A+L+QLRGRVGR QAYA+ + Sbjct: 855 KFLRRESRILVSTTIVESGLDIPYANTILINRADMFGIAELYQLRGRVGRGGQQAYAYFI 914 Query: 916 TPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLY 975 TP +A+ A+KRL + + LG+G+ +A DLEIRGAG LLG +Q+G + +G LY Sbjct: 915 TPSEEALGEVARKRLHTLTTHSGLGSGYQIAMRDLEIRGAGSLLGHQQTGQVAMVGLDLY 974 Query: 976 MELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKT 1035 +E++E AV AL + + + VE + + +P+D++ + R+ FY+R+A A T Sbjct: 975 LEMVEEAVAALSS---ETPPPPGEEPARVEWKTEARIPEDYLGHPSERIDFYRRLAHADT 1031 Query: 1036 ENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088 + + I+ EL DRFG LP R LL AR+R A + G ++ ++ ++ Sbjct: 1032 MDSVTRIEEELSDRFGPLPRETRNLLAGARIRILATQRGFSEVVVRDRDITLK 1084 >UniRef50_C9MMN8 Transcription-repair coupling factor n=1 Tax=Prevotella veroralis F0319 RepID=C9MMN8_9BACT Length = 1187 Score = 946 bits (2446), Expect = 0.0, Method: Composition-based stats. Identities = 359/1187 (30%), Positives = 584/1187 (49%), Gaps = 98/1187 (8%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT--------DQM 66 L L +A A IAER +V + D + A ++++ T Sbjct: 29 RSIFLQGLVASAAPMFFAAIAERWKKTIVFVLSDNEEAGYFYNDLKTITMPEDGTSNTAE 88 Query: 67 VMNLAD--WETLPYDSFSPHQDIISSRLST-LYQLPTMQ------RGVLIVPVNTLMQRV 117 V+ + Y +I+ + + T L L T + ++ + L ++V Sbjct: 89 VLFFPSSYRRAVKYGQRDAGNEILRTEVLTRLSALATEKGTTNRLPLYIVTDPSALSEQV 148 Query: 118 CPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE 177 L L + Q + + L S G+ D V E G++A RG++LD++ E Sbjct: 149 VSKRQLDERRLSLSVNQHIDIVEVEKTLRSFGFTETDYVYEPGQFAVRGSILDVYSYSGE 208 Query: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEV 237 LPYR+DFF D+I+++R F+V+SQ + +++E I ++P ++ + D+F Sbjct: 209 LPYRIDFFGDDIETIRTFEVESQLSSKKLEHIEVVPELATLLEEK-VPFLHFLPSDSFLA 267 Query: 238 KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQA 297 +D ++ + G +A+ Sbjct: 268 FKDFLYVRDAIEN-IYKEGF---------------------------------TAQALTV 293 Query: 298 DTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAA------NA 351 + E + + L + +E N+ R++ H + A + Sbjct: 294 QREGKTEVEQHELEQAFRKEGQL-ITASHFMNEALNYRRIEFGVTHSISDTAKKADGQHV 352 Query: 352 NLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQR 411 + F LR +L +F+ +SE + L ++ + Sbjct: 353 TIQFNTTAQPLFHKNFDLLSKTLRDYLLQGYKLYIFA-DSEKQTIRLKDIFESLSNPDMV 411 Query: 412 IMRLDEASDRGRYLMIGA--------------AEHGFVDTVRNLALICESDLLGERVARR 457 + + G GFVD + + + +R + Sbjct: 412 PDSENLSVVEATTNSQGETKVRALPFTPVNRTIHEGFVDNTLKVCFFTDHQIF-DRFHKY 470 Query: 458 --RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAN 515 + D R ++ L E+ G +VH++ G+G++AG+ + G E + L Y + Sbjct: 471 NLKSDKARQGKMALTMKELQEMEPGDFLVHVDFGIGKFAGLVRVPTGDSYQEVIRLVYQH 530 Query: 516 DAKLYVPVSSLHLISRYA-GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQ 574 + + V + SL+ IS+Y G + E L LG AW R +++A ++++D+A +L+ +YA+ Sbjct: 531 NDIVDVSIHSLYKISKYRRGNSGEPPLLSVLGSGAWDRLKERAKKRIKDLARDLIKLYAK 590 Query: 575 RAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGK 634 R ++GFAF D SF +E TPDQ +A + DM MDRLVCGDVGFGK Sbjct: 591 RRREKGFAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGK 650 Query: 635 TEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQ 694 TEVA+RAAF A ++KQVAVLVPTT+LA QHY F+ R + PVR++ +SR RSAK+ Q Sbjct: 651 TEVAIRAAFKAAVDNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDYLSRARSAKQTKQ 710 Query: 695 ILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTL 754 ++ ++AEGKI+IL+GTHKL+ VK+ DLGLLI+DEE +FGV KE+++ ++ NVD LT+ Sbjct: 711 VIEDLAEGKINILVGTHKLIGKTVKWHDLGLLIIDEEQKFGVTTKEKLRQLKTNVDTLTM 770 Query: 755 TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYY 814 +ATPIPRTL ++ G RD+SI+ TPP R ++T + + V+ +AI E+ R GQVY+ Sbjct: 771 SATPIPRTLQFSLMGARDMSIMRTPPPNRYPIQTQIASFSHEVIADAINFEMSRNGQVYF 830 Query: 815 LYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874 + N V N+ + A + + VP+ R+AIGHGQM+ ELE+++ F + ++VL+ TTI+E G Sbjct: 831 VNNRVGNLPEIANLIKKYVPDCRVAIGHGQMKPEELEKIIMGFMNYDYDVLLSTTIVENG 890 Query: 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIA 934 IDI ANTIII A FGL+ LHQ+RGRVGRS+ +A+ +LL P A+ +DA+ RL A+ Sbjct: 891 IDISNANTIIINEAHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNSDARHRLLALE 950 Query: 935 SLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSL 994 + DLG+GF LA DL+IRGAG LLG EQSG ME +G+ Y ++L AV LK L Sbjct: 951 TFSDLGSGFNLAMQDLDIRGAGNLLGSEQSGFMEDLGYETYQKILSQAVTELKNDEFQDL 1010 Query: 995 E------------DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEI 1042 D VE + PD+++P + R+ Y+ + + + + +LE Sbjct: 1011 YAEEMNEGKQITGDDFIDDCAVESDLEMYFPDNYVPGSSERMLLYRELDNIEKDEDLEAY 1070 Query: 1043 KVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH------VN 1096 + LIDRFG +P L+ + LR+ ++LG K+ ++ ++F + Sbjct: 1071 RQRLIDRFGPVPRQGEELMQVVALRRIGKRLGCEKIILKQERMQMQFVSNPNSMYYQSAA 1130 Query: 1097 PAWLIGLLQKQPQHYRL--DGPTRLKFIQDLSERKTRIEWVRQFMRE 1141 ++ + P+ L R + D+ + ++ +R+ +E Sbjct: 1131 FGKVLNYIGYHPRQCNLKEKNGKRSMVVSDVKSVEQAVKVLREIDKE 1177 >UniRef50_D1PXI7 Transcription-repair coupling factor n=7 Tax=Bacteroidetes RepID=D1PXI7_9BACT Length = 1210 Score = 941 bits (2432), Expect = 0.0, Method: Composition-based stats. Identities = 361/1205 (29%), Positives = 590/1205 (48%), Gaps = 111/1205 (9%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS------QFTDQ 65 K+ + L L ++ + A+R P V I D A +++++ T + Sbjct: 26 KSVKNVFLQGLVASSAPLFFSSAAKRLNHPFVFILQDADEAGYFYNDLNLSSRTPSLTGK 85 Query: 66 ----------MVMNLAD--WETLPYDSFSPHQDIISSRLSTLYQLPT------------- 100 V ++ Y +I+ R L +L + Sbjct: 86 GDDRLRETHSSVYYFPSSYRRSVKYGQRDAANEIL--RTEVLSKLSSLGTNNSLTDHHTS 143 Query: 101 ----------MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGY 150 + ++ + + V + L + +K Q + L +L G+ Sbjct: 144 SAPPAEGERINEPLFIVTYPEAIAELVVSQTHLDERRISLKTAQSIDITDLVHRLRELGF 203 Query: 151 RHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAIN 210 D V E G++A RG+++D++ SELP+R+DFF DEID++R F V+ Q + + ++ Sbjct: 204 EEKDYVYEPGQFAVRGSIIDVYSFSSELPFRIDFFGDEIDTIRTFTVEDQLSKDRKSGVD 263 Query: 211 LLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLP 270 ++P A I + DT V +D E++ + + ++E Sbjct: 264 IVPELATLVS-AKIPFLQFLPDDTVLVAKDMEYVSGMIER-------------IYNEG-- 307 Query: 271 PLFSYFPANTLLVNTGDLETSAERFQADTLARF--ENRGVDPMRPLLP----PQSLWLRV 324 F A L LE + E Q T E+ P R Q + Sbjct: 308 -----FSAQAL---AERLEGATEMEQEQTRREMTKESMLCPPTRFAADAGKFKQVIMGDP 359 Query: 325 DELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGP 384 +++ ++ R + A++ F P +L +++ Sbjct: 360 SKIYGRSESRGRDTASPSPMGEGWGGASISFHISPQPLFHKNFTLLRQSLGDYIQQ-GYR 418 Query: 385 VVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALI 444 V +S+ + + L ++L + +R + S + GF D Sbjct: 419 VYILADSKKQHQRLRDILDEMGADQERSGANAQRSKIDFTPIDRTIHEGFADNDLKACFF 478 Query: 445 CESDLLGERVARR--RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEA- 501 + + +R + + D R ++ L E+ G +VH++ G+G++ G+ + Sbjct: 479 TDHQIF-DRFHKYNLKSDGARAGKMALTMKELQEMEPGDFIVHVDFGIGKFGGLVRVPIP 537 Query: 502 -----------GGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA-EENAPLHKLGGDA 549 E + + Y N+ K+ V + SL+ IS+Y E L LG A Sbjct: 538 TQGNTRQDATDDSQYQEVIRIIYQNNDKVDVSIHSLYKISKYRSSDAGEAPRLSTLGTGA 597 Query: 550 WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAI 609 W R ++KA ++++D+A +L+ +YA+R ++G+AF D Q SF +E TPDQ +A Sbjct: 598 WDRMKEKAKKRIKDIARDLIRLYAKRRKEKGYAFSPDSFMQQELEASFLYEDTPDQLKAT 657 Query: 610 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 669 V +DM + MDRLVCGDVGFGKTEVA+RAAF A + KQVAVLVPTT+LA QH+ F Sbjct: 658 QDVKADMERARPMDRLVCGDVGFGKTEVAVRAAFKAACDSKQVAVLVPTTVLAFQHFQTF 717 Query: 670 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 729 RDR ++PVR++ +SR RSA + Q+L ++ GKIDI+IGTHKLL +VK+ DLGLLI+D Sbjct: 718 RDRLRDFPVRVDYLSRARSAGQTRQVLEDLESGKIDIIIGTHKLLGKNVKWHDLGLLIID 777 Query: 730 EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF 789 EEH+FGV KE+++ ++ NVD +T++ATPIPRTL ++ G RD+SI+ TPP R + T Sbjct: 778 EEHKFGVSTKEKLRKLKTNVDTITMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPIHTE 837 Query: 790 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERE 849 + + V+ +AI E+ R GQV+++ N + N+ + A + + +P+ R+AIGHG+M E Sbjct: 838 LSTFGHEVITDAINFEMSRNGQVFFVNNRISNLPEIANLIQKHIPDCRVAIGHGKMSPEE 897 Query: 850 LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 909 LE+V+ F + ++VL+ TTI+E GIDIP ANTIII A FGL+ LHQ+RGRVGRS+ + Sbjct: 898 LEKVVMGFINYDYDVLLSTTIVENGIDIPNANTIIINGAHRFGLSDLHQMRGRVGRSNRK 957 Query: 910 AYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMET 969 A+ +LL P +T +A++RLEA+ + +LG+GF LA DL+IRGAG LLG EQSG ME Sbjct: 958 AFCYLLAPPKSVLTPEARRRLEALEAFSELGSGFNLAMQDLDIRGAGNLLGAEQSGFMED 1017 Query: 970 IGFSLYMELLENAVDALK-------------AGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 +G+ Y ++L AV L+ G+E S D + VE + PD F Sbjct: 1018 LGYETYQKILTQAVTELRNDEFSDLYADAIEEGKEISGSDFV-EDCAVESDLEMYFPDTF 1076 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076 +P + R+ Y+ + + + +++L + L+DRFG +P L+ + LR+ ++LG Sbjct: 1077 VPGSSERMLLYRELDNIEDDDDLSAYRQRLVDRFGKVPREGEELMQVVALRRVGKRLGCE 1136 Query: 1077 KLEGNEKGGVIEFAEKNHVN------PAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKT 1130 K+ + ++F +I + P+ +R + +S+ + Sbjct: 1137 KVTLRQGMMTLQFVSNQDSPFYQSPVFGRIIKYVMANPRRCNFK-DSRGHRLIHISDVPS 1195 Query: 1131 RIEWV 1135 E V Sbjct: 1196 ITEAV 1200 >UniRef50_C1SMC7 Transcription-repair coupling factor Mfd n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMC7_9BACT Length = 1103 Score = 937 bits (2422), Expect = 0.0, Method: Composition-based stats. Identities = 377/1130 (33%), Positives = 596/1130 (52%), Gaps = 40/1130 (3%) Query: 18 LLGELTGAACATLVAEIAERHAGPV-VLIAPDMQNALRLHDEISQF-TDQMVMNLADWET 75 LL L G C+++ R G V +L+A + + + E F + V+ ++ Sbjct: 3 LLSSLWG--CSSIWHFYNNRPKGRVSILVAGNKREYDLIMQEAEFFFSGVRVLGFPEYTQ 60 Query: 76 LPYDSFSPHQDIISSRLSTLYQLPTMQ-RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 PY+ ++ + R STL L +L+ L++ + P +K G Sbjct: 61 DPYEEARVLPEVFAKRASTLDFLLNADASCILVTTPYGLLKSLPPKDVFASATADIKVGG 120 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 194 R+ L L +GY HV+ V GEYA RG L++FP SE P ++FFDDE + + Sbjct: 121 TYEREELEYILAYSGYVHVEMVEGAGEYAFRGDTLEVFPADSETPCLIEFFDDEAERISY 180 Query: 195 FDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLP 254 D+ ++RTL+ + + LLPA E D D + I +V Sbjct: 181 VDIRTRRTLKIEKTVRLLPASEALFD-----------VDDLRKYINDSDILDKVELYGKY 229 Query: 255 AGIEYWQPLFFSEPLPPLFSYFPAN-TLLVNTGDLETSAERFQADTLARF-ENRGVDPMR 312 AG + P + + L Y + L T D + F+ + E Sbjct: 230 AGCHWLTPAVHN--MENLMDYVSESYNFLFFTEDYRSIFTDFRVLIDDKMPEGENFWNNN 287 Query: 313 PLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLD 372 + P + L+ ++ + + + ++E K++ +K + A +D Sbjct: 288 FIAPSRMLFYMTEDRVNVMAD--ITTAESEGTRYKSSAMLFAGKKGNLYQSMS---AAMD 342 Query: 373 ALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEH 432 ++ + E V+ S+ES+ + E P ++ E G YL Sbjct: 343 IIKSYAEK-SFRVICSIESDRLAKLFSEFSKDYAFIPAKVENYKEVDKAGLYLHSEKFRG 401 Query: 433 GFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGR 492 GF+D LA+ + D+ G R ++ + + +++L G VVH+++G+G Sbjct: 402 GFIDEKLMLAVFTDEDIFGTAKKRPKRGKKELYSTT-----ISDLEPGDHVVHVDYGIGI 456 Query: 493 YAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSR 552 Y G+ GG+ G+++ L Y N LYVP+SS+ I +Y G + L W + Sbjct: 457 YLGLVHQSIGGVEGDFIQLEYDNSEFLYVPLSSIGQIQKYIGSEGSRPRVSSLQTQQWKK 516 Query: 553 ARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAV 612 + +A + + +A +LL +YAQR ++GF+F D F SF ++ T DQ AI+ V Sbjct: 517 VKAQAKARAKKIAMDLLKLYAQRKVEKGFSFTDDGNMLDNFEQSFEYDETDDQLSAIHDV 576 Query: 613 LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDR 672 +DM + M+RLVCGDVGFGKTEVAMRAA AV KQVAVLVPTT+LA+QHY F +R Sbjct: 577 YNDMESAMPMERLVCGDVGFGKTEVAMRAACKAVAGGKQVAVLVPTTVLARQHYMTFFER 636 Query: 673 FANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH 732 F + PV+++ +SRFR+A++ QIL ++++G +DILIGTHK+L +++F+DLGLLI+DEE Sbjct: 637 FKDLPVKVDYVSRFRTARDTRQILVDLSKGDLDILIGTHKMLSKEIEFQDLGLLIIDEEQ 696 Query: 733 RFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE 792 RFGV HKE+IKAMR+NVD+L L+ATPIPRTL +++SG+RD+S I TPP RL V T V + Sbjct: 697 RFGVAHKEKIKAMRSNVDVLYLSATPIPRTLQLSLSGIRDISTIDTPPVDRLPVITKVIK 756 Query: 793 YDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 852 D + V+ AI RE+ RGGQV++L+N VENIQ A + ++P A ++I HGQM ELE+ Sbjct: 757 RD-VEVKNAIQRELERGGQVFFLHNRVENIQTVAAGVKNMLPGANVSIAHGQMTSSELEK 815 Query: 853 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 ++ +F+ + +VLVCT IIE GIDI ANTI+I A H GLAQ++QL+GRVGRS + Y Sbjct: 816 ILMEFYSGKTDVLVCTAIIENGIDIANANTIVINDAAHLGLAQIYQLKGRVGRSGRRGYC 875 Query: 913 WLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF 972 +L+ +++ AQKRL+ I L DLG+G +A +DL++RGAG+LLG +QSG M +G+ Sbjct: 876 YLVVEQFSSLSDVAQKRLKIIQQLSDLGSGVKIAFYDLQLRGAGDLLGADQSGFMVKVGY 935 Query: 973 SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIAS 1032 L++ +++ AV LK S TE+ +P +P D+I D RL +Y++ + Sbjct: 936 ELFIAMIDEAVKDLKG------ITSISADTEIITAIPHFIPADYIEDTKIRLDYYRKFSG 989 Query: 1033 AKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEK 1092 + + + E+ EL + +G L L I +++ A + K+ + F + Sbjct: 990 VEDMDSVRELLYELSELYGELKPETENLGRIMLIKKLAGFANMEKVYLYSNKVKMVFTKG 1049 Query: 1093 NHVNPAWLIGLLQKQPQHYRLDGPT--RLKFIQDLSERKTRIEWVRQFMR 1140 NP ++ + + D L F ++ + ++ + ++ Sbjct: 1050 TPSNPQRIMDAIANAGAGSKFDNEFTLSLFFEKEQKVLDKTVSFINELIK 1099 >UniRef50_A6DFV9 Transcription-repair coupling factor, MFD (Superfamily II helicase ) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DFV9_9BACT Length = 1062 Score = 933 bits (2413), Expect = 0.0, Method: Composition-based stats. Identities = 379/1077 (35%), Positives = 557/1077 (51%), Gaps = 94/1077 (8%) Query: 42 VVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQ---DIISSRLSTLYQL 98 ++ + A +E ++ Q L + + L Y F+ Q DI R TL QL Sbjct: 44 LLCVFETSSKAESCFNEFKKY--QSASLLPNVDLLLYPEFNSDQVEYDIDLERSRTLNQL 101 Query: 99 PT--MQRGVLIVPVNTLMQRVCPHSFLHGHALVMK-KGQRLSRDALRTQLDSAGYRHVDQ 155 + VLI V +L+ V P L+ +L++K ++ + + L G+ + Q Sbjct: 102 LQNRGEPQVLICSVASLLCAVTPPGLLNSQSLILKLADEQYAPEKLCEIFTEMGFDNEAQ 161 Query: 156 VMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAH 215 V GE++ RG +LD+F + P R+DFFDDEIDSLR+FDVDSQ+++ + ++ + P Sbjct: 162 VSLPGEFSLRGGILDVFSPDQKFPVRIDFFDDEIDSLRLFDVDSQKSIADAKSYQVSPVE 221 Query: 216 EFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSY 275 + + I + ++ Sbjct: 222 KCGLEPRGILEYIKGFK------------------------------------------- 238 Query: 276 FPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWP 335 +V ++ ER+Q + + + L+ + + + Sbjct: 239 ----LCVVEEESIDRHLERYQEKVQLSLWDEIKNSIE-LVSDIDIQADYNIKDFPVAALA 293 Query: 336 RVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRR 395 V T ++ + QA QK +D ++ ++ VF SE Sbjct: 294 PVYRSTLPEVERSIH-------------QAHQKFLIDRVKSWINKSWSVHVF-CGSEAGV 339 Query: 396 EALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVA 455 E L E+L + L + +GF+ A++ E +L G R Sbjct: 340 ERLNEVLELGN-------------KKNLLLYPVSLHYGFIVPELKYAVLSEQELFG-RPI 385 Query: 456 RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAN 515 +D + + EL+ G VH +G+ RY G+ + E+L+L +A+ Sbjct: 386 EETKDVSYSSQLQKNLEYEPELNEGDFAVHANYGICRYLGIKVKN----SQEFLLLEFAD 441 Query: 516 DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR 575 D KLY+P+ S HL+ RY GG + L +LG W ++ KA RD AAELL + A R Sbjct: 442 DRKLYLPLDSSHLLMRYIGGKKSVPKLARLGTGFWQKSLDKAENSARDYAAELLRLQAAR 501 Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 EG +F D LF +SFP+E TPDQ AI V DM + MDRL+CGDVGFGKT Sbjct: 502 EHSEGISFPKDNHWQSLFEESFPYEETPDQLSAIEEVKKDMERAKPMDRLLCGDVGFGKT 561 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 EVAMRAAF AV + QVA++VPTT+LAQQH+ +F R +++P++I +SRF S K+Q Q+ Sbjct: 562 EVAMRAAFKAVMSSHQVAIVVPTTVLAQQHFHSFSQRMSDFPIKIATLSRFISKKDQKQV 621 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 L E+AEG++DI++GTH+LLQ D+ F+ LGLL+VDEE RFGV KE +K MR NVDIL+++ Sbjct: 622 LKEMAEGEVDIVVGTHRLLQKDINFQKLGLLVVDEEQRFGVESKEALKRMRVNVDILSMS 681 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYL 815 ATPIPRTL ++M+G+RD S I T P R V+T V + + ++ AI RE+ RGGQVYYL Sbjct: 682 ATPIPRTLYLSMTGLRDFSTILTAPHNRKPVRTIVTKENDEIIEVAIRRELERGGQVYYL 741 Query: 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 +N V+ I+ A +L PEA I IGHGQM E ELE VMN+F +LVCTTIIE+G+ Sbjct: 742 HNRVKTIENVALKLKRQFPEANILIGHGQMDEEELEMVMNEFTDGDGQILVCTTIIESGM 801 Query: 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 DI ANT++I+RAD FGL+ L+QLRGRVGR H QAY +LL P +A+ +A++RL A+ Sbjct: 802 DIRNANTMVIDRADRFGLSSLYQLRGRVGRDHRQAYCYLLMPRDEAIMDNAKERLSALRK 861 Query: 936 LEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLE 995 GAGF LA DLEIRGAG +LG +QSG + +GF LY +LL+ +V+ LK Sbjct: 862 HTHPGAGFKLAMRDLEIRGAGNMLGSQQSGHIAAVGFELYCQLLKKSVEDLKGSIHQDTS 921 Query: 996 DLTSQQ------TEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDR 1049 S ++ ++P L +I + RL YKR ++A NE+ ++ EL DR Sbjct: 922 TSFSADFIHYGFQSIDNKIPVALTPQYIESDDVRLEMYKRFSTAVKYNEIISLEDELKDR 981 Query: 1050 FGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQK 1106 FG + + I +++ L E E +E + + + L QK Sbjct: 982 FGNFTSEVKAYVVIHKIKSLCNLLEFHSCEIKESSLYLEGNDGLYCEARKIPKLKQK 1038 >UniRef50_B5JG36 Transcription-repair coupling factor n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG36_9BACT Length = 1144 Score = 932 bits (2409), Expect = 0.0, Method: Composition-based stats. Identities = 396/1177 (33%), Positives = 588/1177 (49%), Gaps = 117/1177 (9%) Query: 21 ELTGAACATLVAEIAERHAGPVV-LIAPDMQNALRLHDEISQF--------TDQMVMNLA 71 + A A ++ + V+ ++A + + A +L+ +++ F T + Sbjct: 25 GVGEEATAPILEDWIHSSKSRVLTIVAKNSRLAEQLNADLAYFHTQIRGDKTKTRFLYFP 84 Query: 72 DWETLPYDSFSP--HQDIISSRLSTLYQL-PTMQRGVLIVPVNTLMQRVCPHSFLHGHAL 128 + L D SP + S R++ L + + + VL+ L Q V L L Sbjct: 85 EETELSEDEDSPVDRFETGSDRIAALASIRQSNDQLVLVTTPRALAQAVPAVDALTASQL 144 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 V+K GQ + L +L S Y + G++A RG L+D++P+ ++ PYR+DFF DE Sbjct: 145 VLKAGQTHPFEKLVEKLKSLDYDNEGLCEAPGQFARRGGLIDVYPISADTPYRIDFFGDE 204 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQV 248 ID+++ D +QR+ E+I + A A Sbjct: 205 IDAIKELDPVTQRSGAPTESIAIDAAPTLELKPA-------------------------- 238 Query: 249 SKGTLPAGIEYWQPLFFSEPLPPLFSYFPA--NTLLVNTGDLETSAERFQADTLARFENR 306 P G + PA L+ L S + + Sbjct: 239 -----PNG---------------YADHLPARSAWALLEPDQLMESFDSALEQAHGHSIGK 278 Query: 307 GVDPMRPLLPPQ-SLWLRVDELFSELKNWPRVQLKTEHLPTKAANANL-GFQKLPDLAVQ 364 +R Q LW +L + ++ P KT + L KL D + Sbjct: 279 AWTRLRNTRSEQADLWATFSDLDLDSQDDPAAITKTYEAESLTYYRPLADSSKLADERLA 338 Query: 365 AQQKAPLDALRKFLE--TFDGPVVFSVESEGRREALGELLARI-KIAPQRIMRLDEASDR 421 +Q A + L + L+ ++ + + + + E++ ++ + ++ Sbjct: 339 DEQSARIQFLEQVLKWSKAGEQIIVVLPNNSDKNRIQEIIESSTELKKIKFTFWKGDLNQ 398 Query: 422 GRYL----MIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIR---NL 474 G + +G F+ + LI E++L G R R+ + + + + + Sbjct: 399 GFRIHFRPKLGKLSWPFLKKTKGCVLITETELFGRRRGRKPPSKSKALVSQSQVDQLLDF 458 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG 534 AEL G+ VVHL HG+ Y G+T ++ G E L L + L+VP+ HLISRY G Sbjct: 459 AELVDGEFVVHLSHGIALYRGITKVDMQGQMREVLSLEFDEGVVLHVPLQESHLISRYVG 518 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 ++ L K+G + WS+ R+ A D+AA+LL++ A+R G AF D E F Sbjct: 519 ISKTRPKLGKIGSNRWSKTREAAERSTLDLAAKLLELQAKRDTGGGHAFALDTEWQTEFE 578 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 SFPF+ TPDQ +AI DM + + MDRL+CGDVGFGKTEVA+RAAF AV + KQVA+ Sbjct: 579 GSFPFKETPDQLKAIKESKGDMEKEIPMDRLICGDVGFGKTEVAIRAAFKAVMDDKQVAI 638 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 LVPTT+LAQQH+ NFRDR A +P+ +E +SRFR E +IL A GK+DILIGTH++L Sbjct: 639 LVPTTVLAQQHFLNFRDRMAGYPIVVETVSRFRKPAEVKKILQSTAAGKVDILIGTHRIL 698 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 Q DV FKDLGL+++DEE RFG++HKE K R+ VDILT++ATPIPRTL MA++G R+LS Sbjct: 699 QKDVSFKDLGLVVIDEEQRFGIKHKEVFKEWRSTVDILTMSATPIPRTLYMALTGARELS 758 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 +I T P R ++T V+ YD +V E I REI RGGQV+YL+N V+ I A +L +++P Sbjct: 759 VIETAPVERKPIQTIVKSYDDALVSEVIRREIARGGQVFYLHNRVQTINTVAAKLEKMLP 818 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 E I +GHGQM E++LE VM DF +Q++ VLVCTTIIE+G+DIP NTIIIE AD FGL+ Sbjct: 819 EVSIGVGHGQMDEKKLENVMLDFVNQKYQVLVCTTIIESGLDIPNCNTIIIEGADRFGLS 878 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QL+QLRGRVGR QAYA+LL K + A+KRL AI LGAGF LA DLE+RG Sbjct: 879 QLYQLRGRVGRFKRQAYAYLLLHKHKRLMDVARKRLAAIRHHNQLGAGFRLAMRDLELRG 938 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSL-------------------- 994 AG LLG EQSG + +GF LY +LL+ +V LK Sbjct: 939 AGNLLGSEQSGHIVGVGFELYCQLLKQSVARLKGDATALQIRASVKLDFVYQGEGAMTAA 998 Query: 995 ---EDLTSQQTEVEL------RMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVE 1045 ED + ++L + + +P FI + R+ Y+++A A + ++ E++ Sbjct: 999 NRHEDGFTVLNRLDLKEGACEPIQARIPATFIDETRLRIDLYRKMALASSVAQVRELREA 1058 Query: 1046 LIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQ 1105 + DRFG P LL + +R A++ IR +E + I L Sbjct: 1059 ITDRFGKFPAEVEALLRLTEVRCLAEQKHIRSVESQGNRLKCRIYRGRESDY---IKLGS 1115 Query: 1106 KQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 + P+ + + R+ + F+ L Sbjct: 1116 RFPR-------------LNSTNPMKRLNEILVFLNNL 1139 >UniRef50_Q1AXK2 Transcription-repair coupling factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXK2_RUBXD Length = 1054 Score = 927 bits (2397), Expect = 0.0, Method: Composition-based stats. Identities = 393/1063 (36%), Positives = 573/1063 (53%), Gaps = 74/1063 (6%) Query: 26 ACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQ 85 A L A +A R+ PV+L++ ++A R + + FTD+ V++L D F P Sbjct: 13 APRRLRAYLAARNERPVLLLSSTEEDAARYARDAACFTDEPVVHLPSRGVPYGDVFDPEV 72 Query: 86 DIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 + +R L+ L + + V+ LM+R H L + G L D + +L Sbjct: 73 WRVGARQRALHALDSAR--VVAAGPLALMERTPLHE-----PLRLAGGVELDMDEVLLRL 125 Query: 146 DSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEE 205 + GY V++V GE+A RG +LDLFP P R++++ DE++S+R + ++R ++E Sbjct: 126 AALGYERVERVFRPGEFAVRGGILDLFPSTRRSPVRVEWWGDEVESVRAVSLATRRAVKE 185 Query: 206 VEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFF 265 + A+ + A E D + E + ++ +G G++ Sbjct: 186 LAAVTVYAARE---------------GDLAGLAAGEEGLPEEARRGVRVPGLDRL----- 225 Query: 266 SEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVD 325 L + P + +E AE + E + PL + Sbjct: 226 ------LLALGPVEPAGLLPDGMEVWAEEPREGVAGGLEGLVEELYAPLPAADLRFSSGG 279 Query: 326 ELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPV 385 E + P LA A+ L V Sbjct: 280 EGEAL--------------------------SAPPLAPFAETPREAARRLGGLVEDGMAV 313 Query: 386 VFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALIC 445 + S + L +I D + G Y + G E GF +A++ Sbjct: 314 FIACGSGSQVRRTVYALGQIGREVVAAEHADPSLPPGLYAVPGEVEEGFSYPEGGIAVV- 372 Query: 446 ESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGIT 505 + A + R + + A+L G VVH G+GR+ G+ + E G+T Sbjct: 373 ------RQDAVLGRRRERRRRAGRALTSFADLKPGDLVVHAVQGIGRFEGLVSKEVLGVT 426 Query: 506 GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVA 565 +Y+ +TY L+VP + L+ +Y G A L +LGG++W+R ++ +VR +A Sbjct: 427 RDYMQVTYRGGDTLFVPYEQMELLHKYVGDG---ARLDRLGGESWARVTERVRRRVRMLA 483 Query: 566 AELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRL 625 ELL ++A+RA EGFAF D E + +SFP++ TPDQA AI AV DM +P MDRL Sbjct: 484 GELLRLHAERARAEGFAFPPDGEWERELEESFPYQETPDQAAAIAAVKEDMQRPRPMDRL 543 Query: 626 VCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISR 685 VCGDVGFGKTEVA+RAAF A KQ +L PTT+L QQHY FR+R + VR+E +SR Sbjct: 544 VCGDVGFGKTEVAVRAAFKAALAGKQTLMLAPTTILVQQHYRTFRERLERFAVRVESLSR 603 Query: 686 FRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAM 745 F +A E+ +IL ++A G++DILIGTH LL ++V+ KDLGLL+VDEE RFGVRHKERIK + Sbjct: 604 FTTAAERRRILRDLASGEVDILIGTHALLGAEVRPKDLGLLVVDEEQRFGVRHKERIKQL 663 Query: 746 RANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILRE 805 + +VD+LTLTATPIPRT+ M +SG+RD+S+I TPPA R +V T V YD +VR AI RE Sbjct: 664 KTSVDVLTLTATPIPRTMQMGLSGLRDISVIETPPAGRRSVLTHVGPYDEELVRRAIERE 723 Query: 806 ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 865 + RGGQV++++N VE I++AA+RL ELVP R A+ HGQM ER LE VM F +VL Sbjct: 724 VARGGQVFFVHNRVETIEEAAQRLRELVPGVRFAVAHGQMPERALEEVMQRFLEGEADVL 783 Query: 866 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTD 925 V TTI+E+G+DI TANT+I+ERAD GLAQL+QLRGR+GRS QAYA+L P + + Sbjct: 784 VTTTIVESGLDIATANTLIVERADAMGLAQLYQLRGRIGRSTEQAYAYLFAPLGATL--E 841 Query: 926 AQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDA 985 AQ+RLEA+ +LG+GFA+A DLEIRGAG LLG EQSG + +GF +Y+ LLE AV Sbjct: 842 AQRRLEALLDFTELGSGFAVAMRDLEIRGAGNLLGAEQSGHIAAVGFEMYLRLLEEAVAL 901 Query: 986 LKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVE 1045 R E + VE+ + + LP +++ D R+ Y+R ++A + E++++ E Sbjct: 902 ---ERGEEPERREERPVIVEVLLDAYLPPEYVADEIERVDLYRRASAAGSLAEVDDLAEE 958 Query: 1046 LIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088 L +RFG LP+PAR LL + RL+ ++ G + + Sbjct: 959 LEERFGPLPEPARNLLGLTRLKILGRRAGASSVGYRSGALTVY 1001 >UniRef50_Q2GHL2 Transcription-repair coupling factor n=5 Tax=canis group RepID=Q2GHL2_EHRCR Length = 1134 Score = 925 bits (2390), Expect = 0.0, Method: Composition-based stats. Identities = 334/1121 (29%), Positives = 583/1121 (52%), Gaps = 50/1121 (4%) Query: 30 LVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLPYDSFSPHQDII 88 ++ ++ + I L + ++ W ++PY SPH ++ Sbjct: 19 IIKMYIKKLIHSAIYIVNQETQLHNLASIFKFYVPNLEIIIFPAWNSIPYKKNSPHNSVM 78 Query: 89 SSRLSTLYQLP---TMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 + R+ TLY L ++I +N + Q+V + + L + Q ++++ + L Sbjct: 79 AERIKTLYSLITRHNDNPYIIISTINAITQKVLHQNIILQSVLKITSLQNITKNHIEDYL 138 Query: 146 DSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEE 205 + GY V + GE+AT ++D+FP + P R+ ++ I S+ F+ +Q Sbjct: 139 TNHGYSQYSIVQDIGEFATYNNIIDIFPTTYKNPIRIHLNNNLIQSIHYFNRQTQLIDNN 198 Query: 206 --VEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPL 263 + + + P E K I++F ++ +++ + G G E + PL Sbjct: 199 SSLNEVVIYPTSEIIKQKKNIDIFSKTYKTK---PNQDQNLLNTIISGKKHIGEENFLPL 255 Query: 264 FFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLR 323 F+ E L +F+Y NT L+ L + + + ++ + +PP L++ Sbjct: 256 FYKEELQNIFNYISQNTTLIFNDKLINEIKEYNNQIYLNYRSQ----LSYQVPPPQLYVD 311 Query: 324 VDEL-----------FSELKNWPRVQLKTEH-LPTKAANANLGFQKLPDLA--VQAQQKA 369 +E FS+ N T+ + T + N Q +P+ VQ +Q Sbjct: 312 SEEFKIITKQFHKTIFSQSDNTSNNSAYTDRNIHTSSFNITEKIQNVPNFKTLVQNKQID 371 Query: 370 PLDALRKFLET--FDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMI 427 + L ++++T ++ + S G E + L + I +I E + I Sbjct: 372 IFEILTQYIKTTCHTKKLIIACYSTGSLEYIQNRLRTLNIKLCKIENYQEIC-SSYNIAI 430 Query: 428 GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLE 487 H F+ + +I E DLL +Q++ N +I N L IG V+H + Sbjct: 431 LPIYHSFI--SKYTIVIAEHDLL------YKQETTNKSNISNIISNDTNLDIGDIVIHKD 482 Query: 488 HGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGG 547 +G+G+ + T + +++ + Y N+ KL++PV +++LIS+Y G N L KLG Sbjct: 483 YGIGKIVALETTKVFDSYHDFIKIEYYNNDKLFLPVENINLISKY-GQQNVNVTLDKLGS 541 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607 +W + + K ++ +A ELL I A R G +F D E Y+ FC+ F + T DQ Q Sbjct: 542 TSWQQRKTKIKNHIKKIAKELLTIEAARRLSTGKSFFPD-ENYKHFCNEFSYTETEDQLQ 600 Query: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667 AI + D+ M+RL+CGDVGFGKTE+A+RAAFL + QVA++VPTTLL +QH+ Sbjct: 601 AIKDMEHDLSSGKIMNRLICGDVGFGKTEIALRAAFLVASQNYQVAIIVPTTLLCRQHFI 660 Query: 668 NFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 F +RF +P ++I+ +S+ + E + ++ G++ I+IGTH +L DV F +L LL Sbjct: 661 VFTERFKKFPNIKIKQLSKIVARSEIKKTKESLSCGQVHIIIGTHAILAQDVTFANLSLL 720 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 I+DEE +FGV+ KE +K ++ NV +++L+ATPIPRTL M++ G++DLS+I TPP RLAV Sbjct: 721 IIDEEQQFGVKQKELLKKIKTNVHVISLSATPIPRTLYMSLCGIKDLSLIKTPPKNRLAV 780 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 T+ Y+ ++++AI+RE RGG+V+Y+ + NI+ ++++ +LVPE ++ HGQ+ Sbjct: 781 TTYTTYYEETIIKDAIIREHNRGGRVFYVCPQISNIKSISDKIRKLVPEIKMNTAHGQLS 840 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 +L+ +MNDF +F +L+ T+IIE G+DIP ANTIII AD FGLAQL+QL+GRVGRS Sbjct: 841 PTQLDTIMNDFFDGKFTILLTTSIIECGLDIPFANTIIIHNADMFGLAQLYQLKGRVGRS 900 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 + +A+ + + T + +LE I S++ + +GF L+ HD++IRG G L+GEEQSG+ Sbjct: 901 STKGFAYFIL--SEKATNKSAIKLEIIQSIDSINSGFNLSLHDMDIRGFGNLVGEEQSGN 958 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026 ++ IG LY ++LE ++ + + + + P+ +I D+ R+ Sbjct: 959 IKDIGIELYQQMLEEELNIYSEYPKDLDHINININVNIRI------PEHYIQDIGLRMRV 1012 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGV 1086 YK+I S KT+ +++ +EL ++FG LP+ LL+ ++Q +GI ++E + + Sbjct: 1013 YKKIGSLKTKEDIDNYYIELTNKFGKLPNEVENLLNTIYIKQLCANIGIYEVEQIKNSIL 1072 Query: 1087 IEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE 1127 ++ + ++ P +++ + L I + S Sbjct: 1073 LKIDSNTTLK-QKILNYFINNPLTFKIQNNSILMLINNSSN 1112 >UniRef50_C1A9L3 Transcription-repair coupling factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9L3_GEMAT Length = 1104 Score = 921 bits (2381), Expect = 0.0, Method: Composition-based stats. Identities = 366/1098 (33%), Positives = 559/1098 (50%), Gaps = 84/1098 (7%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDM-QNALRLHDEISQFTDQ-MVM 68 AG +G L G++ A LVA +A +V++ D +A R ++ D V Sbjct: 25 PGAGASLRVGGLAGSSDAVLVAGLARALPQRLVVVIADQLGDAERWLADLQALLDDVPVA 84 Query: 69 NLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHAL 128 E + PH ++ R+ TL +L +L+ +++R L G L Sbjct: 85 LYPPREG--FGEVEPHAEVAGERVETLEKLGRSAVRILLTTSRAVLERTALPRALSGARL 142 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 ++KG + L T L+S G+ V V + +++ RG + D++ G P RL+F+ D+ Sbjct: 143 ELRKGDQRRLSDLVTHLESIGFERVPMVEDVAQFSVRGGIFDIYSFGMAEPVRLEFWGDD 202 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQV 248 I LR FD+++QR+ + E +LP + E ++V Sbjct: 203 IIELRHFDLNTQRSTRDAELALILPVDGRV--------------------QMAEETDERV 242 Query: 249 SKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQA-DTLARFENRG 307 + P + P+++++V E + D A Sbjct: 243 A-----------LPALW-----------PSDSIVVMPAGSSVLPELVRTWDEAAHHIELA 280 Query: 308 VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANL--GFQKLPDLAVQA 365 + L++ E+ S L + V++ +AN+ PD+ Sbjct: 281 LRRGEDYTHRDLLFVPPPEMASTLARFGTVRINPPPQKATSANSKDLQPVGPEPDVMFPV 340 Query: 366 QQKAPLDALRKFLETFDG---PVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG 422 + + + L V ++ G+ E L ELL Sbjct: 341 RHPETISRDLRVLRRLQRDGLHTVILCDNAGQAERLDELLGEDG-------------PVA 387 Query: 423 RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQP 482 L IG GFV + ++ + ++ RR R + + L L G Sbjct: 388 AALAIGVLGGGFVVPHV-VRVLTDHEIF---RRERRLRRTRRYSTGASLDTLGALKPGDY 443 Query: 483 VVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN--- 539 VVHLEHG+G Y G+ + T E ++ Y +L VP+ + I RY + + Sbjct: 444 VVHLEHGIGIYRGIEKIFVRESTIESAVIEYEGGDRLNVPLYRIDQIERYRSAHDVSDDA 503 Query: 540 --APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSF 597 LHKLGG+ W R+K + ++ ELL++YA+R D + SF Sbjct: 504 PAPRLHKLGGNKWKAQREKTRMAILEMTQELLELYARRKVTTRPPHGADGAWQRQLESSF 563 Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 FE TPDQ +A V D+ MDRL+ GDVG+GKTE+A+RAAF AV +QVAVLVP Sbjct: 564 LFEDTPDQRKATEDVKRDLEGERPMDRLLVGDVGYGKTEIAIRAAFKAVQGGRQVAVLVP 623 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 TT+LA+QH +F DR A++PV +E++SRF++A +Q ++ ++ + ++DI+IGTH+LL D Sbjct: 624 TTILAEQHARSFGDRLADFPVTVEVMSRFQTASQQAVVVEKLKKKQVDIVIGTHRLLSPD 683 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 V F DLGL+IVDEEHRFGV+HKER+K ++ + D+LTLTATPIPRTL+ +++G+RDL+++ Sbjct: 684 VAFGDLGLIIVDEEHRFGVKHKERLKQLKLSTDVLTLTATPIPRTLHQSLAGLRDLTLMQ 743 Query: 778 TPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEAR 837 T P R V TFV +D ++ EAI RE+ RGGQV++++N +E I+ A+ L +VP AR Sbjct: 744 TAPRDRSPVLTFVEPFDDALIEEAISRELDRGGQVFFVHNRIETIEAIADHLRRIVPRAR 803 Query: 838 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 897 +A+GHGQM+ERELE+VM F ++LV T I+E+G+D+P ANT+ + RADH GLAQL+ Sbjct: 804 VAVGHGQMKERELEKVMRQFVEGEVDILVSTLIVESGLDVPNANTMFVNRADHLGLAQLY 863 Query: 898 QLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGE 957 QLRGRVGRSH +AY +LL P + DA++RL + +LGAG+ +A DLE+RGAG Sbjct: 864 QLRGRVGRSHRRAYCFLLVPD--RVDEDAERRLAVLEHHTELGAGYRVALKDLELRGAGN 921 Query: 958 LLGEEQSGSMETIGFSLYMELLENAVDALK--AGREPSLEDLTSQQTEVELRMPSLLPDD 1015 LLG EQSG + +GF LY+ LL+ V L G++P + +V L P+ LPD+ Sbjct: 922 LLGPEQSGFVHAVGFDLYLRLLDETVRLLADGGGQKPWI------PADVNLDFPAYLPDE 975 Query: 1016 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 +I +L Y+R+ + + +E +K E+ DRFG LP A L A LR L + Sbjct: 976 YIISQEAKLDVYRRLTAMRDVAAIEALKREVRDRFGALPPAADALFGSAVLRVLGAMLSV 1035 Query: 1076 RKLEGNEKGGVIEFAEKN 1093 + I F Sbjct: 1036 DGVLVRASEARITFRADA 1053 >UniRef50_O51568 Transcription-repair-coupling factor n=24 Tax=Borrelia RepID=MFD_BORBU Length = 1125 Score = 918 bits (2373), Expect = 0.0, Method: Composition-based stats. Identities = 324/1138 (28%), Positives = 588/1138 (51%), Gaps = 49/1138 (4%) Query: 15 EQRLLGELTGAA---CATLVAEIAE-RHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL 70 EQ + LTG A L+ +I E G ++LI D ++ +++ T+Q + L Sbjct: 25 EQNIFFSLTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTLDKIKNDLQVITNQ-IFEL 83 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVM 130 + L Y I + R+ L+ G+ I + +L+ ++ + L + + Sbjct: 84 NYFSPLVYKGIGSKSTIFNERIKFLFNFYKKNPGIYITVLKSLLSKIPDKNTLLKNIYKI 143 Query: 131 KKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEID 190 +K ++ + L + GY +V GE+ +G ++D++P G + P R+ D+I+ Sbjct: 144 EKNTNINTADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYPFGEQNPIRIALNFDKIE 203 Query: 191 SLRVFDVDSQ-RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVS 249 ++ F+ +Q + E+ +LP E D I +++ + + + I +++ Sbjct: 204 EIKKFNPLTQLKHDNEILEFQILPKKEIIWDDKTINTLKTKIKSV-----EYKKILEELD 258 Query: 250 KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG--DLETSAERFQADTLARFENRG 307 E + PL + L +T +VN + E E+ + ++ Sbjct: 259 FKKETKTEEMFYPLVANTYLG---DEIEKHTPIVNFEINNFEKEIEKIHQEYEKLYKE-A 314 Query: 308 VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQ 367 + + ++ P+ + L + + + + + + F+ + + Sbjct: 315 EEAGKNIIDPKRILLNYKTFNLKSD------VLFSKIKSLKSKETIEFKIESERNFFSNI 368 Query: 368 KAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMI 427 + +L+ ++ + ESE ++E L + + ++++ + + + Sbjct: 369 ALTKEEFENWLKN-GFKIIIAAESESQKEKLKYIFKELPKVSIEVLKISSSLIIEKEKIA 427 Query: 428 GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLE 487 E +T + + + + I + E+ VVH+ Sbjct: 428 IILESNIFNTGQKI------------------NKAFESSKTKAIDSFVEIEKNSHVVHIN 469 Query: 488 HGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGG 547 HG+G + + ++ + +Y+ + YA KL++P+ +LI +Y G +N L K+ Sbjct: 470 HGIGIFRQIKRIKTSSLEKDYIEIEYAEGEKLFIPIEQTNLIQKYIGSDPKNIKLDKISS 529 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607 W + + A +++ ++A +L+++Y++R + +G + D E LF FP++ TPDQ + Sbjct: 530 KTWIKNKANAKKRIEEIADKLIELYSKRESIKGIKYPEDNELQLLFESEFPYDETPDQIR 589 Query: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667 AI + DM MDRL+CGDVGFGKTEVAMRAAF AV +KQV VL PTT+LA+QH++ Sbjct: 590 AIKEIKEDMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFN 649 Query: 668 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727 F+ RF N+P++IE++SRF +++IL E+ GKIDI+IGTHK+L K+LGL+I Sbjct: 650 TFKKRFKNFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLII 709 Query: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787 +DEE RFGV+ KE++K +R +VD L L+ATPIPR+L+M++ +RD+S++ PP R+ ++ Sbjct: 710 IDEEQRFGVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIE 769 Query: 788 TFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 847 ++ + ++++ AI E+ R GQV+ + +++E + + L P ARIAI HG++ Sbjct: 770 AYLESFSELLIKHAIESELSRDGQVFLVNHNIEELYYLKTLIERLTPYARIAIIHGKLTG 829 Query: 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 E+E +M++F + + +L+ TTIIE GIDIP ANTIII A+ FGLAQL+QL+GRVGR Sbjct: 830 EEIENIMHNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLYQLKGRVGRGS 889 Query: 908 HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSM 967 +AYA+ L + + + +RL AI +LGAGF +A D+EIRG G LLG EQ G + Sbjct: 890 QKAYAYFLYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGNLLGREQHGEI 949 Query: 968 ETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFY 1027 E+IG Y+ +L A++ K G+ S E+ + ++++ +P+++ + ++ Y Sbjct: 950 ESIGLDYYLTMLNKAIEK-KMGKISSDEE----EVDIKINYSGFIPENYAKNEQDKILIY 1004 Query: 1028 KRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVI 1087 K+I +TE E ++I+ EL + FG +P+ +LL +A L+ A+ L I KL+ + I Sbjct: 1005 KKIFKIQTEEESKKIRSELHNDFGPIPEEINSLLMLAELKILAKDLNITKLKEKNRALEI 1064 Query: 1088 EFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE--RKTRIEWVRQFMRELE 1143 E+ + +I +LQK P L+ + + +I ++ + + L+ Sbjct: 1065 EYKNIESIPMEKIIEILQKHPNLLILNPSYQKSIFLSFKNIEKSEKINYIYKNINLLK 1122 >UniRef50_Q5PBQ9 Transcription repair coupling factor n=7 Tax=Anaplasma RepID=Q5PBQ9_ANAMM Length = 1152 Score = 918 bits (2372), Expect = 0.0, Method: Composition-based stats. Identities = 343/1093 (31%), Positives = 570/1093 (52%), Gaps = 29/1093 (2%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGP-VVLIAPDMQNALRLHDEISQFT-DQMVM 68 V G ++ + L+A++ V + + + L + F ++ V Sbjct: 29 VHVGSLEVITGVAPEFGDMLMAQMCMEDRHTSFVFVVQEGTSLAHLAKTLKFFDRERDVF 88 Query: 69 NLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ-RGVLIVPVNTLMQRVCPHSFLHGHA 127 L W+++P+ SP ++++R+ L + + V++ + Q+V P + A Sbjct: 89 ILPKWDSIPHKGVSPSSLVMATRMKCLLDVSNAKAPYVMLTTSGAVAQKVLPAHSVASAA 148 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 + + G LS DAL L + GY V E G +A RG ++D+F P R+DF D Sbjct: 149 ITVAPGDGLSMDALVQHLVACGYTQSSAVREVGSFAVRGEIVDIFQPIDNKPTRIDFCYD 208 Query: 188 EIDSLRVFDVDSQRTLE-EVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQ 246 ++S+R FD+D+Q T + ++ + PA E + + F +++ + DP Sbjct: 209 AVESIRYFDLDTQITDGGALPSLVIYPASEVIKTEENLNRFYTRYMQQYP-NPDPAFAEA 267 Query: 247 QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENR 306 +S+ G E W PL ++ L +F Y P L++ E R + + + Sbjct: 268 MLSRQKCM-GEEQWLPLLQADELSTIFDYVPNAKLVLAEQASEEVLRRLEGAQEEDYTAQ 326 Query: 307 GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKA----ANANLGFQKLPDLA 362 L ++++ F + +L +++N+G L Sbjct: 327 SATGKSALFLDLQGYIQITRSFHKAIFCRFDATSENNLWEHQQVICSSSNIGAVPNFRLL 386 Query: 363 VQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG 422 Q Q+ ++ + ++ + SEG L + + K I R+ E + Sbjct: 387 AQEQKADVFAVAADYINSAHKTLILACYSEGS---LLYFIDKFKAHGIHISRVHEYAGPI 443 Query: 423 RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQP 482 + +I E LL + A R + T++ L +G Sbjct: 444 GAFNAAVLPTSCDVVTHDFIVITEYSLLKRQCAAGR-------SSGTVVSEDTCLAVGDV 496 Query: 483 VVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPL 542 VVH ++GVG + + TL G +++ + Y N+ K +VPV + LI++Y G + L Sbjct: 497 VVHKDYGVGIFNALRTLSVCGHLHDFVEILYRNNDKFFVPVEDIDLITKY--GTNTDVVL 554 Query: 543 HKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETT 602 KLG +W K ++++D+A LL A R EG F ++Y FC FP+ T Sbjct: 555 DKLGSTSWQERSAKLKKRIKDIAQTLLHSEAMRVLAEGNKFLA-NQRYLDFCKEFPYVET 613 Query: 603 PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH--KQVAVLVPTTL 660 DQ +AI+ V D+ MDRL+CGDVGFGKTEVA+RAAFL ++ KQVAV+VPTTL Sbjct: 614 EDQLKAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVINEDPAKQVAVIVPTTL 673 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 L +QH FR+RF N+ + ++ ++R SA +++++ + G I+I+IGT LL D++F Sbjct: 674 LCRQHLAAFRERFQNYDINVQQLARS-SATQKSKVKKALENGDINIIIGTSALLAEDIRF 732 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 DL LLI+DEE FGV+ KE++K +R +V +L+L+ATPIPRTL+M++SG+++LS++ TPP Sbjct: 733 LDLSLLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLHMSLSGIKNLSVLRTPP 792 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 R+AV + +YD +++ AIL E+ RGG+V++ + +I L +LVP ++ + Sbjct: 793 MGRMAVDIAIIQYDGNIIKTAILDEVSRGGRVFFTCPFISDIDGVLADLQKLVPNVKVEV 852 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 HG+ R L+++MNDF +F+VL+ T+IIE+GIDIP ANTII+ AD FGLAQL+QL+ Sbjct: 853 AHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGLAQLYQLK 912 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGRS + YA+ + + KRLEA+ SL +G+GFALA D+++RG G L+G Sbjct: 913 GRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVRSLNSVGSGFALALQDMDMRGFGNLVG 972 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 EEQSG+++ +G LY ++LE A+ A + E +V + +P+ +I ++ Sbjct: 973 EEQSGNIKEVGIELYHKMLEEAIAACQ---EQPHIQAGCHSVKVGVDANVRIPESYIREL 1029 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 + R+ YK+I+S KT E + VEL++RFG P LL++ R++Q LGI+++ Sbjct: 1030 DLRIRVYKKISSLKTAEEADTCFVELVNRFGAPPPEVMNLLNVMRIKQLCSALGIQEVTQ 1089 Query: 1081 NEKGGVIEFAEKN 1093 ++ ++ Sbjct: 1090 AKRHVTFSLSQGT 1102 >UniRef50_Q255X7 Transcription-repair coupling factor-superfamily II helicase n=13 Tax=Chlamydiaceae RepID=Q255X7_CHLFF Length = 1084 Score = 904 bits (2337), Expect = 0.0, Method: Composition-based stats. Identities = 370/1128 (32%), Positives = 561/1128 (49%), Gaps = 78/1128 (6%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL 70 + L+ + A L A+ V++I L +++S F + Sbjct: 19 INTSTPLLIENIRPGARGFLAAKFFHERKKSVIMIT-TRSCIDDLLEDLSSFLGFPPLEF 77 Query: 71 ADWETLPYDSFSPHQ---DIISSRLSTLYQLPTMQRGVL-IVPVNTLMQRVCPHSFLHGH 126 E SP D + R LY+L + V + + L+++ Sbjct: 78 PSSEI----DLSPKLVNIDAVGKRDKILYELCEKKSPVFCVTTLKALLEKTRSPKDTVHQ 133 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 L ++ G L D + + GYRH + GE+A RG ++D+FP+ S+ P+R++F+ Sbjct: 134 HLDIQVGDLLDPDMMIDLCKNLGYRHETLARDKGEFAYRGGIIDIFPLSSQEPFRIEFWG 193 Query: 187 DEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQ 246 ++I S+R F+ Q + +V +++ PA T + E+ D F Sbjct: 194 EKIISIRPFNPSDQLSTGKVSKLSISPA----TKDSGKEVLSHCLLDYFHTP-------- 241 Query: 247 QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENR 306 P F + L L F + RF Sbjct: 242 ---------------PAFIFDNLARLEDDFSE-------------ISGTLSSLPNRFLPI 273 Query: 307 GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQ 366 R L P + + + V ++ H KA+ F P+ + Sbjct: 274 QYLCERALQSPTIFFEEKNFPNAHTVKNNEVNIEVFHRDVKASRLVAPFV-YPNETIDKH 332 Query: 367 QKAPLDALRKFLETFDGPVVFSVE-SEGRREALGELLARIKIAPQRIMRLDEASDRGRYL 425 + PL L+K E ++ + ++L E A I+ + + + E S Sbjct: 333 ENPPLGFLQKLQEYIPNKEPLNIAVYNTKSKSLKEARALIETLEENSIHIYEKS------ 386 Query: 426 MIGAAEHGFVDTVRNLALICESDLLGERVARR-RQDSRRTINPDTLIRNLAELHIGQPVV 484 G F A I S+ ++ RR +Q + ++ + + + G+ VV Sbjct: 387 --GNLSSSFALVKERFAAISLSEFTSTKILRRQKQRNYFSVTTEEVFVPI----PGETVV 440 Query: 485 HLEHGVGRYAGMTTL-EAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLH 543 HL +G+G++ GM I +YL+L YA+ A+LYVP +LISRY G +E+ LH Sbjct: 441 HLHNGIGKFIGMEKKPNHLNIETDYLVLEYADKARLYVPSDQAYLISRYVGTSEKTPDLH 500 Query: 544 KLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTP 603 L G W R+R + + + A +LL + AQR+ F + E+ F + FP+E TP Sbjct: 501 NLNGSKWKRSRDLSEKSLVLYAEKLLQLEAQRSTAPSFIYPPHGEEVMKFAERFPYEETP 560 Query: 604 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-KQVAVLVPTTLLA 662 DQ +AI + SDM MDRL+CGD GFGKTEV MRAA AV + +QV V+VPTT+LA Sbjct: 561 DQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGHRQVIVMVPTTILA 620 Query: 663 QQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 722 QHY+ F R A P++I ++SRF K + +I + A+G +DILIGTHKL+ +++FK+ Sbjct: 621 NQHYETFSQRMAGLPIKIAVLSRFSEGKAKKKIFEDTAKGDVDILIGTHKLINKNLEFKN 680 Query: 723 LGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR 782 GLLI+DEE RFGV+ K+ +K VD LT++ATPIPRTL M++SG RDLS+I PP Sbjct: 681 PGLLIIDEEQRFGVKVKDFLKERYPMVDCLTVSATPIPRTLYMSLSGARDLSLITMPPLD 740 Query: 783 RLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 842 RL V TF+ E++ + A+ E+LRGGQ Y ++N +E+I + + LVPEARIA+ H Sbjct: 741 RLPVSTFILEHNDETLSAALRHELLRGGQAYVIHNRIESIFRLGNTIRTLVPEARIAVAH 800 Query: 843 GQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGR 902 GQM EL + F Q NVLV T +IE GIDIP ANTI++++AD FG+A L+Q++GR Sbjct: 801 GQMSSDELASIFQKFKDQEINVLVATALIENGIDIPNANTILVDQADKFGMADLYQMKGR 860 Query: 903 VGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEE 962 VGR + +AY + L PH ++ A KRLEA+ ++ G G +A HDLEIRGAG +LG + Sbjct: 861 VGRWNRKAYCYFLVPHLDRLSVPAAKRLEALNK-QEYGGGMKIALHDLEIRGAGNILGTD 919 Query: 963 QSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNT 1022 QSG + IGF+LY +LL+ V ALK P+L + ++E S +PD +I + Sbjct: 920 QSGHISAIGFNLYCKLLKKTVAALKNNTSPAL---FNDDVKIEFPYKSRIPDTYIDLASM 976 Query: 1023 RLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNE 1082 R+ FY++I A+ +L+ IK E+ DRFG LPD L +A+LR A K I ++G Sbjct: 977 RIEFYQKIGGAEDAEQLDLIKEEMRDRFGPLPDEVLWLFALAQLRLFALKHNISSIKGTG 1036 Query: 1083 KGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKT 1130 I+ +NH + K+ Y L L + L + Sbjct: 1037 NALYIQ---QNHGKTEQI-----KKTLPYSLSPTPELLVSEVLESIEK 1076 >UniRef50_D1N873 Transcription-repair coupling factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N873_9BACT Length = 1098 Score = 901 bits (2329), Expect = 0.0, Method: Composition-based stats. Identities = 387/1074 (36%), Positives = 553/1074 (51%), Gaps = 91/1074 (8%) Query: 39 AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADW---ETLPYDSFSPHQDIISSRLSTL 95 P++ P++ A R E+ +F ++ + L E P + S R L Sbjct: 50 NAPLIAAFPELNLAERAVAELEEFRQELDLPLRLLVIPEAGRGKLLFPGGE--SRRARAL 107 Query: 96 YQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQ 155 T + +++ V+ L+ L +K G L L +L Y + Sbjct: 108 NAALTGEFDLVVGSVHALLAPAPAPETTVEAQLTLKAGMELPMAELLEKLVRLDYDDEYE 167 Query: 156 VMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAH 215 GE+A RG ++D+F + P R++FF D IDSLR F ++QR+ VE Sbjct: 168 ATVSGEFARRGGIIDIFSPAHDFPCRVEFFGDTIDSLRSFAPETQRSTGAVEEYR----- 222 Query: 216 EFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSY 275 +A I + D F +F E L + Sbjct: 223 --VIGRAGITAGGAADSDLFA---------------------------YFEERDYRLLTL 253 Query: 276 FPANTLLVNTGDLETSAERFQADT-LARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW 334 +P+ ER+ + LARF+ D R ++ EL Sbjct: 254 YPSTA--------RERIERYSGEAALARFDALARD--REAAGRAQVFCDATELSLYQDAV 303 Query: 335 PRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGR 394 P + LP A +L + + A++ ++K ++ LR+ +VF Sbjct: 304 P-----ADVLPPLGAAESLISGEAGESALELRRKLLVEQLRQAARE-GARIVFLAPHADN 357 Query: 395 REALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERV 454 L +A R GF L + E +L+ Sbjct: 358 IPVLEAWCRGHGLA-----------GRNFSFEPACIGAGFAIPAEQLIAVTERELVNAGF 406 Query: 455 ARRRQDSRRTINPDTLIRN----------LAELHIGQPVVHLEHGVGRYAGMTTLEAGGI 504 R + S + + LA+L G VHL+HG+G + G TLE+ GI Sbjct: 407 TREGRSSESDVVAPAASADEEPIRVPEFSLADLDEGDYAVHLDHGIGIFRGFKTLESRGI 466 Query: 505 TGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDV 564 E L++ Y + LYVP+ H +SRY G A + LH LGG W+R ++ A V Sbjct: 467 GREVLVMEYKDGQLLYVPLLQAHKVSRYLGAAG-HVTLHSLGGARWNRDKESARRSVHSY 525 Query: 565 AAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDR 624 AA++L + A R + G + D + + F +FPF TPDQ+++ + DM P MDR Sbjct: 526 AADMLRLQAMRQSAPGIVYPPDTAETKAFLRAFPFRDTPDQSRSTAEIRRDMESPRPMDR 585 Query: 625 LVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMIS 684 L+CGDVG+GKTE+AMRAAF AV QVA+L PTT+LAQQHY +FR+RFA +P I+++S Sbjct: 586 LLCGDVGYGKTEIAMRAAFKAVSAGYQVAILAPTTVLAQQHYYSFRERFAAYPYTIDVLS 645 Query: 685 RFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKA 744 RFR+A EQ I+ +V G IDILIGTH+L D+KF++LGL+++DEE RFGV+HKER++ Sbjct: 646 RFRTAAEQNAIMQKVRSGGIDILIGTHRLCNPDLKFRNLGLVVIDEEQRFGVKHKERLRR 705 Query: 745 MRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILR 804 RA VD+LT++ATPIPRTL +AM+G RDLS + T P +RL VKT + D M V +AI Sbjct: 706 FRAEVDVLTMSATPIPRTLYLAMAGARDLSTLMTAPKQRLPVKTVIAPEDEMQVAQAIRA 765 Query: 805 EILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNV 864 E+ RGGQVYYLYN V I++ A++L LVPEA+ A+ HGQM E ELE +M F + + Sbjct: 766 ELARGGQVYYLYNRVRTIEEKADKLRALVPEAKFAVAHGQMNEHELEAIMTSFLEGKIDC 825 Query: 865 LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTT 924 LVC+TIIE+G+D+P ANTIIIERAD FGLA+L+QLRGRVGR HQAYA++L P + ++T Sbjct: 826 LVCSTIIESGLDVPNANTIIIERADRFGLAELYQLRGRVGRWTHQAYAYMLLPKSQLVST 885 Query: 925 DAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVD 984 DA+KRL AI +LGAGF LA HDLEIRG+G LLG EQSG + +IGF LY +LL+ V Sbjct: 886 DARKRLSAIRRCSNLGAGFQLALHDLEIRGSGNLLGSEQSGHLNSIGFDLYCQLLKQEVS 945 Query: 985 ALKAGREPSLEDLTSQQTEVEL----------RMPSLLPDDFIPDVNTRLSFYKRIASAK 1034 L+ + +E L + ++ +P+ P D+I RL Y+R+ + Sbjct: 946 RLRGEQ---VEFLPEVEVAIDFVSFTLNAPPGVLPAAFPPDYIGGERLRLDAYRRLGALA 1002 Query: 1035 TENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088 +E ELE+ EL DR+G LP A LL + RLR + G + ++ Sbjct: 1003 SEAELEDFANELRDRYGKLPKCAENLLAVIRLRLLVARAGYELFTVADGRVILR 1056 >UniRef50_C7M0K8 Transcription-repair coupling factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0K8_ACIFD Length = 1131 Score = 894 bits (2310), Expect = 0.0, Method: Composition-based stats. Identities = 363/1126 (32%), Positives = 564/1126 (50%), Gaps = 40/1126 (3%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLPYDS 80 L+ A A +A +V++A + A + +++ + + V L W+TLP++ Sbjct: 28 LSAAGVALAWHRLA---PRRMVVVAEGDREAEAIANDLRWWLPRIPVALLPPWDTLPFER 84 Query: 81 FSPHQDIISSRLSTLYQLPTM--QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 P ++RL L + + V++ V + ++ S L++ +G L R Sbjct: 85 VVPSMGTTAARLRALASIVDPPDEGIVVVTTVRAALTKLVA-SAARLERLIVARGDELVR 143 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 D L T L+ AGY QV GEYA RG+++D+ G P R+D F DE+D L FD Sbjct: 144 DELITWLEDAGYVREPQVSAAGEYAVRGSIVDVADPGLASPVRIDLFGDEVDRLAFFDPT 203 Query: 199 SQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIE 258 +QR++ ++E + L PA E D + + V E + G P E Sbjct: 204 TQRSVGDLERVELFPAREVRIDTDLAKQLEALAARVPAVADRVEAVL----AGREPP--E 257 Query: 259 YWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQ 318 PL + P + L++ + AD L E + + P + Sbjct: 258 PLVPLVLGDVAPTVLDIVDEADLVLVP---AKGMDAVIADRLVAEERSIREALAPTWGLE 314 Query: 319 SLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFL 378 + L L +E + V+ + A LG V + ++ Sbjct: 315 ADALGSVSLMAEPERLRAVRARLVSADPAGFGARLGVSHRDLAGVFGRIRSA-------- 366 Query: 379 ETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIG-AAEHGFVDT 437 VV + R + + L I Q G + G Sbjct: 367 RRDGVHVVVATHGSERARHVAQRLGEEGIDVQLASVATCLEGHGVRVAAGLDLVESVELE 426 Query: 438 VRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMT 497 +L +I ++ L R T + +L G VVH +GV RY G+ Sbjct: 427 PASLVVIADASL-----VRPTAPRASVPTRTTGGLSFDDLVEGSFVVHEAYGVARYRGLV 481 Query: 498 TLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKA 557 G++ EYL L +A+ ++++P L L++ Y G E L +L G W R +A Sbjct: 482 RQVVDGVSREYLELEFASADRIFLPFEHLALVAPYVGSEE--PRLTRLRGGDWQRQVHRA 539 Query: 558 AEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMC 617 ++VA EL+ +Y +R A G + D F + FP+E T DQ + I VL+D+ Sbjct: 540 RRAAQEVAQELVVLYQRRLAATGSSITPDPVLLSEFAERFPYELTRDQERTIAEVLADLA 599 Query: 618 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 +P+ MDRLVCGDVGFGKTE+A+RAAF +QV VL PTTLLA QH + FR+RF P Sbjct: 600 KPVPMDRLVCGDVGFGKTEIALRAAFAVASEGRQVLVLAPTTLLAAQHAEVFRERFEGTP 659 Query: 678 VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVR 737 +R+ M+SR +A+E I AE+A G++D+ I TH L + +F LGLL++DEE RFGVR Sbjct: 660 IRVGMLSRLSTAREAASIRAELASGELDVCIATHAALGASTRFARLGLLVIDEEQRFGVR 719 Query: 738 HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV 797 HKE++K VD+L L+ATPIPR+L +++ G+RDLS++ T P R + T V +D V Sbjct: 720 HKEQLKEAFPGVDVLVLSATPIPRSLELSLVGIRDLSVLRTAPVDRHPILTHVGPFDPAV 779 Query: 798 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 857 V EAI RE+LR GQV++++N V +I+ +A +A+LVPEAR+ + HGQ+ LER M F Sbjct: 780 VTEAIRRELLREGQVFFVHNRVRDIEASARLVADLVPEARVLVAHGQLPPAALERTMAQF 839 Query: 858 HHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP 917 H +VLV TTI+E GID+ ANT+I++RA+ GLAQLHQLRGRVGRS QAYA+LLT Sbjct: 840 WHGEADVLVATTIVENGIDLARANTLIVDRAEQLGLAQLHQLRGRVGRSGRQAYAYLLTS 899 Query: 918 HPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYME 977 ++ A +RL +A DLGAG+ +A DLE+RGAG +LG QSG + +G+ LY+ Sbjct: 900 TTGGISDIALERLRTVAENTDLGAGYRIAMRDLELRGAGTVLGMRQSGHVSEVGYELYVR 959 Query: 978 LLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTEN 1037 L+ V + EP+ + + +++ + +LL +D++ + TR+ Y+R+A A+++ Sbjct: 960 LVAEEVARMDGVEEPTPDR----EVALDVPVSALLAEDYVAEAETRMDLYRRLARARSQA 1015 Query: 1038 ELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK--LEGNEKGGVIEFAEKN-H 1094 E ++ EL DRFG P A L+ +A+ R++ LG + N + +E Sbjct: 1016 EFDQFLEELRDRFGPPPAEALALVSLAKARRRLATLGADHALVRRNPRSARLELVVGPLQ 1075 Query: 1095 VNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1140 + A + L ++ + + + R+E + + + Sbjct: 1076 PSVATRLRLERRLHGVVSRGDDLAVPLARR-EDALGRLEALLEILE 1120 >UniRef50_P57381 Transcription-repair-coupling factor n=4 Tax=Buchnera aphidicola RepID=MFD_BUCAI Length = 812 Score = 893 bits (2309), Expect = 0.0, Method: Composition-based stats. Identities = 415/796 (52%), Positives = 578/796 (72%), Gaps = 1/796 (0%) Query: 353 LGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRI 412 +QKL DL + + L +L +F G ++FS+ E + + L R KI PQ I Sbjct: 17 FKYQKLLDLFYNVNNQKKNNQLLSYLYSFSGKIIFSLTEEKSLKKILRFLMRHKIHPQYI 76 Query: 413 MRL-DEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLI 471 R+ D + + MI ++GF+D N+ +C DLL + + + + + Sbjct: 77 KRIIDIKKEIDYFYMIEEIKNGFIDKKNNILFLCTKDLLPILIDDKYIGNIKKNTNNINK 136 Query: 472 RNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISR 531 NL++L + PV+H+EHG+GRY G+TT+E I EYL+++YA KLYVPVS+LHL+S Sbjct: 137 FNLSQLILNHPVMHIEHGIGRYKGLTTIETASIQSEYLVISYAEGDKLYVPVSNLHLVSP 196 Query: 532 YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 591 Y G + ENAPLHKLGGD W++ + K ++ V D AA+LL IYA+R +K GFAFK + E+Y Sbjct: 197 YTGTSIENAPLHKLGGDDWNKEKHKISKTVYDHAAQLLHIYAKRESKTGFAFKKNIEKYD 256 Query: 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ 651 LFC+ F+TT DQ + + VL DM +P+ MDRL+CGDVGFGKTE+AMRA+FLAV N KQ Sbjct: 257 LFCNDCSFKTTSDQNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQ 316 Query: 652 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 711 VA+LVPTTLLAQQHY NF+ RF+NWPV I ++SRF++ KEQ I G+I+I+IGTH Sbjct: 317 VAILVPTTLLAQQHYKNFKIRFSNWPVNINILSRFQTQKEQDLIFKHTKNGRINIIIGTH 376 Query: 712 KLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR 771 KLL ++++ LGLLI+DEEHRFGV HKE IK + +N+DILTLTATPIPRTLNMAM+G++ Sbjct: 377 KLLFKNIEWCSLGLLIIDEEHRFGVSHKEIIKKIYSNIDILTLTATPIPRTLNMAMTGIK 436 Query: 772 DLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 831 DLSIIA PPA+RLA+KTF++EY +++R+ ILREI RGGQVYY+YN V+NI AERL+ Sbjct: 437 DLSIIAKPPAQRLAIKTFIQEYSPILIRKTILREISRGGQVYYIYNKVQNIMNIAERLSI 496 Query: 832 LVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 L+PEA I IGHGQM+ +L++VMN+F++ +FNVL+CTTIIE+G+DI ANTIIIE +DHF Sbjct: 497 LIPEASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGVDIARANTIIIENSDHF 556 Query: 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLE 951 GL+QLHQLRGR+GRS++QAYA LL + +T+DA+KRLEAI+S+++ G GF+L+ DLE Sbjct: 557 GLSQLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISSVDNFGGGFSLSNQDLE 616 Query: 952 IRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSL 1011 IRG GE+LG+EQSG ++ IGFSLYM+LL+NA+D LK G+ S+E + E++L + SL Sbjct: 617 IRGVGEILGKEQSGHIKNIGFSLYMDLLKNAIDLLKNGKIFSVEKSLKKPLEIDLHVSSL 676 Query: 1012 LPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQ 1071 LP +I D+NTRL FYK++A+A E ++EEIK ELID+FG LPD ++ L+ IA++R A Sbjct: 677 LPSSYILDINTRLFFYKKLANAIHEKQIEEIKYELIDQFGKLPDFSKNLILIAKIRLIAD 736 Query: 1072 KLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTR 1131 K+GI+ ++ N G+IEF + +N +L+ + QK+P+ ++++ TR+KFI L R Sbjct: 737 KIGIKYIKSNNNIGIIEFNDYGSINTEYLLKMFQKEPKIWKMETSTRIKFILHLKNDYLR 796 Query: 1132 IEWVRQFMRELEENAI 1147 ++W+ +R L + I Sbjct: 797 LKWIINLLRNLFKKNI 812 >UniRef50_A1BEU9 Transcription-repair coupling factor n=12 Tax=Chlorobiaceae RepID=A1BEU9_CHLPD Length = 1127 Score = 893 bits (2308), Expect = 0.0, Method: Composition-based stats. Identities = 353/1149 (30%), Positives = 566/1149 (49%), Gaps = 126/1149 (10%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 + L G+ + L + PV+++ + + +++ ++ E LP Sbjct: 76 VTGLKGSLSSVLACTLFSESDCPVLVV-SGQTSFEKYENDLGGLLPHAPVHTFSDE-LP- 132 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 L L + +++ + L+ + S + + Sbjct: 133 --------------LALVALVQKKNPLILSSFDDLLLPLSSPSEALEKLFTLAVEKEAGY 178 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 + L + L G+ + V + GE++ RG+++D+F G+++P R++FF + + SLR FD++ Sbjct: 179 EKLLSFLAENGFEPREFVEDEGEFSVRGSIVDVFSFGAKVPLRIEFFGNTVSSLRTFDIN 238 Query: 199 SQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIE 258 SQ + + + A L + + E + I Sbjct: 239 SQLSQKTLTAAEL-----------------TGNFNPAESSKASAEIV------------- 268 Query: 259 YWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQ 318 L Y P +T+++ E SA Sbjct: 269 -------------LADYLPLSTIIIIDDCTELSA-------------------------- 289 Query: 319 SLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFL 378 + L + L + ++++K A+ + F A + L+K Sbjct: 290 --FENACSLEAALSGFRQIKIKP------ASGIAIDFHSSAQEKYNANFRLLASRLQKES 341 Query: 379 ETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTV 438 ++ VF+ S E L + +A I + + GF Sbjct: 342 DS-GRRTVFAASSRREIEELADFIAE------EIHGAETEQTIEADWIPVTLYTGFTFGD 394 Query: 439 RNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTT 498 L L ESD+ G+ + R+ +++L +L +G VVH +G+GR+ + T Sbjct: 395 --LDLYTESDIFGKFHTPKGHHKRKI--KGISLKDLQKLKVGDYVVHENYGIGRFKTLET 450 Query: 499 LEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAA 558 + G E +++ Y +L+V V +++L+S+Y L KLG W + K Sbjct: 451 ISVGNSEQECVLVEYEGGDQLFVNVQNINLLSKYTASEGSLPSLSKLGSSKWGAKKDKVR 510 Query: 559 EKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQ 618 K+RD+A L+ IYA+R EGFA D + F SF F+ TPDQ +AI V DM Sbjct: 511 RKLRDIAINLIKIYAKRKMTEGFACCADTIFTREFEASFVFDETPDQLKAIEEVKKDMQA 570 Query: 619 PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPV 678 MDRL+CGD GFGKTE+AMRAAF AV++ KQVA+L PTT+LA QH ++F RF N+P+ Sbjct: 571 SHPMDRLICGDAGFGKTEIAMRAAFKAVESKKQVAILTPTTILAHQHGESFTRRFENFPI 630 Query: 679 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH 738 I ++SRF + K+Q +I+ ++ G+IDI+IGTH+L+ DV FKDLGLL++DEE FGV Sbjct: 631 SIAVLSRFVARKDQEKIIEKIKAGQIDIVIGTHRLVSKDVLFKDLGLLVIDEEQHFGVEV 690 Query: 739 KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVV 798 KE+++ VD LT++ATPIPRTL +M G RDLSI++TPP R V+T + YD ++ Sbjct: 691 KEKLRDSFPGVDSLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPVETILTGYDPTII 750 Query: 799 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 858 + AI E+ R GQV++L+N + +++ + L +LVP ARI I HGQM +ELE+VM DF Sbjct: 751 QSAIRHELQRDGQVFFLHNRISGLEEVQQTLRDLVPYARIVIAHGQMPSKELEKVMMDFM 810 Query: 859 HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 + +VL+ T+II +G+DI ANTIII RAD FGL+ L+QLRGRVGRS +A +++TP Sbjct: 811 QKEIDVLISTSIISSGLDISNANTIIINRADMFGLSDLYQLRGRVGRSERKASCYMITPP 870 Query: 919 PKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMEL 978 + +A +RL I S +LG+GF +A DL+IRGAG LLG EQSG + +GF LY ++ Sbjct: 871 LNTLKKEAVQRLAVIESFTELGSGFTIALRDLDIRGAGNLLGAEQSGFIHELGFDLYQKM 930 Query: 979 LENAVDALKA-------GREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIA 1031 LE V LK+ E S L S+ ++ +L+PD +I ++ R +FY++I+ Sbjct: 931 LEETVAELKSTEFYQLFSNEESPAVLPSKPCDLAFFFDALIPDFYISAIHERFAFYEKIS 990 Query: 1032 SAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAE 1091 A +E L+ E+ DRFG LP+ LL +A+L+ A GI K++ + + + Sbjct: 991 RATSEEVLDSFHSEMKDRFGELPEEVANLLLLAKLKIAASAAGIDKIDIQPETFTMFLPD 1050 Query: 1092 KNH---VNPAWLIGL--------LQKQPQHYRLDGPTRLKFIQDLSERKTRIEWV---RQ 1137 + + N + L +Q ++ D +L KT + R Sbjct: 1051 QTNETIANSTFFHYLFLAVQEPWMQDYKPGFKADKKMKLVLRHPKESDKTPAVLLRKYRD 1110 Query: 1138 FMRELEENA 1146 +++LE+ + Sbjct: 1111 LLKKLEQRS 1119 >UniRef50_C7H0W1 Transcription-repair coupling factor n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0W1_9FIRM Length = 1092 Score = 891 bits (2304), Expect = 0.0, Method: Composition-based stats. Identities = 355/1119 (31%), Positives = 569/1119 (50%), Gaps = 85/1119 (7%) Query: 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADW 73 E+ + + +A A ++E + H V L+A ++ ++L + FT + + L+ Sbjct: 4 AERIEVIGVEASASARYISENIKNHDR-VFLVAATAEDCMQLAAALEYFTKKETIVLSKD 62 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKG 133 Y+S Q+I R + ++ + +R ++IV + +V F AL + G Sbjct: 63 LFFGYESRDRQQEISFLR--AVKRIASQERCMVIVTPFMINTKVSSAVF--KSALTLTMG 118 Query: 134 QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193 Q +SR+ + QL GY E GEYA RG ++D+ E R++FF D ID +R Sbjct: 119 QDISREDVEVQLSELGYERRQNAYEDGEYAVRGGIIDVMQ-DGENGVRIEFFGDCIDGIR 177 Query: 194 VFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTL 253 FD+ +QR+ E +E+I++ P F + I Sbjct: 178 KFDIKTQRSSEALESIDIEPVS-------------------FANGDEDSKI--------- 209 Query: 254 PAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLET-----SAERFQADTLARFENRGV 308 + + + + D+ ++FQ L E++ + Sbjct: 210 -----------------DIIDIVSPDVIFIEQPDVVAKSCTDEEQKFQKTILNLRESKQI 252 Query: 309 DPMRPLLPPQSLWLRVDELFSELKNWP---------RVQLKTEHLPTKAANANLGFQKLP 359 L + + + L W + +P + + + Sbjct: 253 SEEDIL--DHMALVDMKRMEQRLGIWQECDKPKNKAIYYMSAFDIPKGSFYYGKPAEVVR 310 Query: 360 DLAVQAQQKAPLDALRKFLETFDG---PVVFSVESEGRREALGELLARIKIAPQRIMRLD 416 A + L+ F+E + V + E + L E + I Sbjct: 311 KNAGVIRNVIDSKELKNFIERHEDEGFTVRVMAKDEYSKARLQEHFGILGITADIF---- 366 Query: 417 EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAE 476 GF+D + L+ E D+ G RV R ++++ +I + Sbjct: 367 -------TFGRADEFRGFIDNDEHSCLLTEKDIFGVRVYRAKRNTNESI--GERLSGYQN 417 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 + G +VH G+GRY G+ T++ G + +Y+ L YA D KLYVPV + +++S+Y+G + Sbjct: 418 IEEGDYLVHKTKGIGRYTGIKTMKLSGRSKDYICLVYAQDDKLYVPVENANVLSKYSGVS 477 Query: 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596 + L KL + WS ++KA V ++A ++L+ A+R AK+G+AF D E+ + F Sbjct: 478 DAAPKLSKLFTNEWSVTKKKAWLSVLELAKKILEDEAKRKAKKGYAFLPDDEESKKFDAD 537 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 F + T DQ +AI+ V +DM MDRL+CGDVG+GKTEVA RA + V KQVA L Sbjct: 538 FSYIPTDDQLRAIDEVKADMESHSPMDRLLCGDVGYGKTEVAARAMYKCVAAGKQVAFLA 597 Query: 657 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS 716 PTT+L QHY RF I +SRFR+ +Q +I+ + GK+DILIGTH++L Sbjct: 598 PTTILVNQHYKTLVKRFEKTAAIIGELSRFRTDVQQKKIIEDAKAGKVDILIGTHRMLSQ 657 Query: 717 DVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 776 D+ F+DLGLLI+DEE RFGV KE+I+ +R NVD+LTL+ATPIPRT++MA+SG RDLS+I Sbjct: 658 DIGFQDLGLLIIDEEQRFGVVQKEKIRRLRQNVDVLTLSATPIPRTMHMAISGARDLSLI 717 Query: 777 ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 PP R+ V TFV ++REAI RE+ R GQVY + + ++Q E++ LV Sbjct: 718 THPPLERMPVNTFVYIKSDEIMREAIEREVARKGQVYVVCRRISHMQDVKEKIERLVKGI 777 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 R+ +GQM E+ +E ++ F +VLVCT IIETGIDI ANTIII AD G+A+L Sbjct: 778 RVDTVNGQMNEKYIEDTLSSFIAGEIDVLVCTKIIETGIDIKNANTIIILDADMMGIAEL 837 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 +QLRGRVGR + ++A+LL K ++ + + RL AI G+ LA D++IRGAG Sbjct: 838 YQLRGRVGRGNRSSFAYLLHNDYKKLSDEQKSRLTAIKEFAKFGSSLTLAMKDMQIRGAG 897 Query: 957 ELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 +++G++Q G M +IG+ +Y++L+E+AV AL GRE +ED + E+ L + + +P + Sbjct: 898 DIIGKQQHGHMISIGYEMYIKLIEDAVKALNEGREIEIED--EVECEMSLDIEAYIPKSY 955 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076 I D ++L Y++IA +T E +++K + D FG P+ R L++++ ++ +A + GI Sbjct: 956 IHDTQSKLMVYRKIAGIQTNEEFQDVKEYIEDMFGRSPENVRKLMELSFVKNKAARCGIS 1015 Query: 1077 KLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDG 1115 K+ NE ++E+ + P L K ++ G Sbjct: 1016 KVRSNEFDIIVEYISAKSLQPHDYSALAGKFKDVLKIGG 1054 >UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=cellular organisms RepID=A1KUB2_NEIMF Length = 1375 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 400/710 (56%), Positives = 527/710 (74%), Gaps = 7/710 (0%) Query: 441 LALICESDLLGERVARRRQDSRRTINP---DTLIRNLAELHIGQPVVHLEHGVGRYAGMT 497 +A+I ESDL + VAR R +RR + D L+R+LAE++IG PVVH EHG+GRY G+ Sbjct: 668 IAVITESDLY-QYVARSRVHNRRKKHAAVSDGLLRDLAEINIGDPVVHEEHGIGRYMGLI 726 Query: 498 TLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKA 557 T++ GG T E ++L YA +A+LYVPVS LHLISRY+G A EN LHKLG AW++A++KA Sbjct: 727 TMDLGGETNEMMLLEYAGEAQLYVPVSQLHLISRYSGQAHENVALHKLGSGAWNKAKRKA 786 Query: 558 AEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMC 617 AEK RD AAELL++YAQRAA+ G F+ + YQ F D F +E T DQA AI AV+ D+ Sbjct: 787 AEKARDTAAELLNLYAQRAAQSGHKFEINELDYQAFADGFGYEETEDQAAAIAAVIKDLT 846 Query: 618 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 Q MDRLVCGDVGFGKTEVA+RAAF+AV KQVAVL PTTLL +QH NF DRFA++P Sbjct: 847 QAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHAQNFADRFADFP 906 Query: 678 VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVR 737 V++ +SRF ++K L +A+G +DI+IGTHKL+Q +++FK LGL+I+DEEHRFGVR Sbjct: 907 VKVASLSRFNNSKATKAALEGLADGTVDIVIGTHKLVQDNIRFKSLGLVIIDEEHRFGVR 966 Query: 738 HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV 797 KE++K +RANVDILT+TATPIPRTL+MA+ G+RD S+I T P+RRLAVKTFV+ + Sbjct: 967 QKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVKPFSEGS 1026 Query: 798 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 857 VREA+LRE+ RGGQV++L+N+V+ I+ ERL L+PEARI + HGQ+RERELE+VM DF Sbjct: 1027 VREAVLRELKRGGQVFFLHNEVDTIENMRERLETLLPEARIGVAHGQLRERELEQVMRDF 1086 Query: 858 HHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP 917 QRFNVL+C+TIIETGIDIP ANTIII RAD FGLAQLHQLRGRVGRSHHQAYA+LLTP Sbjct: 1087 LQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQLRGRVGRSHHQAYAYLLTP 1146 Query: 918 HPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYME 977 + +T DA+KRL+AIA+ ++LGAGF LA DLEIRGAGE+LGE QSG M +GF+LY E Sbjct: 1147 --EYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSGEMIQVGFTLYTE 1204 Query: 978 LLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTEN 1037 +L+ AV LK GR+P L+ TE++L P+LLP+ + PD++ RL YKR+A +T Sbjct: 1205 MLKQAVRDLKKGRQPDLDAPLGITTEIKLHSPALLPESYCPDIHERLVLYKRLAVCETVQ 1264 Query: 1038 ELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNP 1097 ++ I EL+DRFGL P +TL++ LR A++LGI ++ + + F + N+V+P Sbjct: 1265 QINAIHEELVDRFGLPEQPVKTLIESHHLRLMAKELGIDAIDAAGEAVTVTFGKNNNVDP 1324 Query: 1098 AWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAI 1147 +I L+Q + YRL G +L+F ++ + RI V+ ++ L+ + Sbjct: 1325 TEIILLIQNDKK-YRLAGADKLRFTAEMENIEVRINTVKNVLKTLQNRCL 1373 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 168/431 (38%), Positives = 233/431 (54%), Gaps = 15/431 (3%) Query: 7 YTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-Q 65 Y +P K E+ L+ + +A H V++ D + ALRL F Sbjct: 3 YPIP-KPREKSRWPNLSQGSLPLALARYLP-HKRLKVVLTQDAEQALRLQTAWRFFRPHD 60 Query: 66 MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHG 125 + L DWETLPY+ FSPHQD++S RLS L+Q+ + VL VPV T MQ++ P FL G Sbjct: 61 TAVFLPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAG 120 Query: 126 HALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFF 185 +K GQ L L+T L AGY HV V+ GE+A RG ++DLFPMGSE+PYR+D F Sbjct: 121 RTFWLKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSEMPYRIDLF 180 Query: 186 DDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIY 245 DDEIDS++ FD D+QRT+ V I LLPAHEFPTD A ++FRS++R+ + + +Y Sbjct: 181 DDEIDSIKTFDTDTQRTISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDGNPNDAAVY 240 Query: 246 QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFEN 305 + VS G AG+EY+ PLFF L LF Y + L V+ GD+ A RF +D +R+ Sbjct: 241 KAVSNGHFGAGVEYYLPLFFENELETLFDYIGEDALFVSLGDVHAEANRFWSDVKSRYAM 300 Query: 306 RGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQA 365 D P L PQ L+L D LKN+ +V LP + + LPDLAV Sbjct: 301 AQGDETYPPLLPQHLYLSADVFAGRLKNYGQV------LPDVSGKEH----ALPDLAVNR 350 Query: 366 QQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE--ASDRGR 423 Q PL AL+ F F+G ++ ES GRRE + L + + + + ++ Sbjct: 351 QSDEPLQALKDFQTAFEGRILLCAESLGRRETMLGFLQQNGLKAKSVSDWQGFLSAHEPL 410 Query: 424 YLMIGAAEHGF 434 + + +GF Sbjct: 411 MITVAPLAYGF 421 >UniRef50_B1H078 Transcription-repair coupling factor Mfd n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H078_UNCTG Length = 1048 Score = 887 bits (2293), Expect = 0.0, Method: Composition-based stats. Identities = 333/1105 (30%), Positives = 546/1105 (49%), Gaps = 120/1105 (10%) Query: 49 MQNALRLHDEISQFTDQMVMNLADWET-LPYDSFSPH--------QDIISSRLSTLYQLP 99 + +D++ F + D E +P S D + R ++ Sbjct: 47 DEELSSFYDDLHSFFNSAFHTPQDCELDVPVVKSSHSAPDIFILPSDNMQQRTFATDKIK 106 Query: 100 TMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEH 159 ++ ++ ++ V + + + + Q+ L T L S GY V + Sbjct: 107 NLKSFIVCATDISINSPVL--DSKNNIGINVAQNQKCDFSNLVTSLSSFGYTRTSFVEDK 164 Query: 160 GEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT 219 ++A RG ++D++ + E+P R+ F + ++++RVFD +SQ + + I +LP Sbjct: 165 LQFAVRGEIIDVWTVAGEMPVRILFKYNTVEAIRVFDPESQLSNVFISEIKILPVS---- 220 Query: 220 DKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN 279 FSE + YF Sbjct: 221 ---------------------------------------------FSECNSTIKDYF--- 232 Query: 280 TLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL 339 + D E + F E + + + + ++ N Sbjct: 233 ----DINDKENTMLYFDYLIGEEAEKS--------------FDKYELIINDPLNAISQYQ 274 Query: 340 KTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALG 399 + N NL F L D A D + ++ RE + Sbjct: 275 GYKSFTGFQGNVNLFFNSLKDFA-----------------ENDVKIKIYCANDSDRERIS 317 Query: 400 ELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQ 459 +L + + + G+ GF + I ++L +++ Sbjct: 318 DLFYENRWNYKNPE-----------FLYGSLSRGFYLENAKVTCISSREML----YKKKP 362 Query: 460 DSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKL 519 S I + + + E+ G VVH ++G+GRY G+ T+ EYL + Y N KL Sbjct: 363 VSFPKIRGGSRLEGIWEILAGDYVVHEKYGIGRYIGLKTISRENSISEYLCIEYKNGDKL 422 Query: 520 YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 Y+P + I +Y G L+ + AW R + +A E A ELL +Y QR+ + Sbjct: 423 YIPPEQIKTIKKYIGVEGVKPKLYSMDTLAWERVKSRAREAAAKFAEELLKLYVQRSLIK 482 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 F + ++FP++ TP Q +AI + +D +P M+RLVCGDVG+GKTEV + Sbjct: 483 RKPFGPGTAWEKELENTFPYDETPGQLKAIEDIKNDFLKPYPMERLVCGDVGYGKTEVVV 542 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 RAAF AV Q A+LVPTT+LAQQHY+ F DR + +P+++ ++SRF++ +Q +I ++ Sbjct: 543 RAAFKAVHESMQTAILVPTTVLAQQHYNTFCDRLSPFPIKVAVLSRFQTKAKQKEITQDL 602 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 G IDI+IGTH+LLQ DVKFK+LGLL++DEEHRFGV+ KE+IK+M+ N+DIL L+ATPI Sbjct: 603 ENGLIDIIIGTHRLLQKDVKFKNLGLLVIDEEHRFGVKQKEKIKSMKKNIDILMLSATPI 662 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTL+ ++SG RDLS+I TPP RL ++T + YD +++ I E+ R GQV+Y+YN + Sbjct: 663 PRTLSSSLSGFRDLSVIETPPFGRLPIETSISLYDENLIKNIIEAELSRNGQVFYVYNKI 722 Query: 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 E I A + ELVP ++ I +GQM+ +++E +M F + +VL+ TTIIE+G+DIP+ Sbjct: 723 ETILTKAASIRELVPGIKLGIIYGQMKAKDIEEIMWKFINMELDVLLATTIIESGLDIPS 782 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 NT+IIE ++FGL+QL+QLRGR+GR +AY +L K ++ +A KRLEAI +L Sbjct: 783 VNTMIIEEVENFGLSQLYQLRGRIGRDRKKAYCYLFY-KDKTLSDEAVKRLEAIREFGEL 841 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 G+GF LA DLEIRGAG +L Q G + IG+ ++ +LLE +K ++E Sbjct: 842 GSGFRLALKDLEIRGAGGILSSSQHGFVRDIGYDMFAKLLEEEGKKVKG---DAVESQEK 898 Query: 1000 QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPART 1059 + T ++L++ +L+P +I + R+ FY+++++A+ +E IK EL+DRFG +P+ + Sbjct: 899 KNTVIDLQINALIPPTYIEGEDIRILFYRKLSNAQNIKAIENIKNELLDRFGKIPNETQM 958 Query: 1060 LLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTR- 1118 L +I LR A+KL I ++ + + F+ K + A + L + Sbjct: 959 LFEITNLRLTAEKLDIERIAEDNNYIYLYFSRKADFSKADITKLTNDYSRIIEFITGKYY 1018 Query: 1119 -LKFIQDLSERKTRIEWVRQFMREL 1142 K +D+ + +E++ +F+ L Sbjct: 1019 AFKLKKDMIDT-NTVEYLEKFLSCL 1042 >UniRef50_B1ZYU7 Transcription-repair coupling factor n=2 Tax=Opitutaceae RepID=B1ZYU7_OPITP Length = 1205 Score = 883 bits (2281), Expect = 0.0, Method: Composition-based stats. Identities = 394/1228 (32%), Positives = 586/1228 (47%), Gaps = 144/1228 (11%) Query: 19 LGELTGAACATLVAEIAERHAGPV-VLIAPDMQNALRLHDEISQFTD-------QMVMNL 70 L +T +A ++ E+ RH PV +++A D++ A RL ++ + F Q + Sbjct: 12 LTGITPSAQGAVLTELTLRHPAPVWIVVAADLKAAERLAEDAAFFHGAAQLPHAQTTLVF 71 Query: 71 ADWETLP-----YDSFSPHQD--IISSRLSTLYQL-----------------PTMQRGVL 106 E++P ++F+ D + S+L L + V+ Sbjct: 72 P--ESMPDAGDMREAFAASNDRFTVLSKLRATRSLGVATSSEVGGARRRGGATALPPLVI 129 Query: 107 IVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRG 166 + L+Q V + +GQ S L +L Y G YA RG Sbjct: 130 VTTPGALLQPVPALEEFATREFTLSRGQTQSFQGLLERLQQLDYDSEAVCEAPGHYAIRG 189 Query: 167 ALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIEL 226 ++D++P+ + PYRLDFF DEI+++R FD +QR+ VE+I + + D + + Sbjct: 190 GIIDVYPVTANTPYRLDFFGDEIEAIREFDPVTQRSGATVESITISASSRVRLDPSKTGI 249 Query: 227 FRSQWRDTFEVKRDPEHIYQQVSK---------GTLPAGIEYWQPLFFSEPLPPLFSYFP 277 T V +P + +++S+ G P G+E P+ PL + Sbjct: 250 ADYLSPRTHLVLIEPAALEEKLSQLAREADGATGVPPVGLESAA----VSPVHPLNALLG 305 Query: 278 ANTLLVNTGDLETSAERFQ-ADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPR 336 + DL+ +A + AD + +++ + R P+ + + L E R Sbjct: 306 KCAAIFGVSDLDEAAALLEDADDDSTWDSESLSHHRHY--PEDALVAQERLQVEEDARRR 363 Query: 337 VQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRRE 396 + L K + + L++ F + +EG R Sbjct: 364 FLQQVAAWRQSGFAVFLVVSKEGEEQRIREILQEDAKLKRIQPQFLRGTL----NEGFRI 419 Query: 397 ALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVAR 456 P E + VR L ++ E+++ G + R Sbjct: 420 TFR------GANPSPPEAKPEETPPTLTWPSLP------PKVRGLVVVTETEVFGRQRQR 467 Query: 457 RRQDSRRTINPDTLIR---NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTY 513 R + R + I + +EL G VVHL+HG+ Y G+T L+ E + L + Sbjct: 468 RPALNPRAMAQRAQIDQLLDFSELVEGDFVVHLQHGIAHYRGLTKLDTAQGVREVISLEF 527 Query: 514 ANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYA 573 + L+VP+ HLISRY G ++ L ++G W +AR A D+AAELL I A Sbjct: 528 DDHVTLHVPLQESHLISRYVGLSKTKPQLGRIGSGRWEKARLAAERATIDLAAELLRIQA 587 Query: 574 QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFG 633 R A+ GFAF D + F SFPF T DQ +AI +DM + MDRL+CGDVGFG Sbjct: 588 AREAQPGFAFPPDTTWQKEFEASFPFTETRDQLRAIEETKTDMERTQPMDRLICGDVGFG 647 Query: 634 KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT 693 KTEVA+RAAF AV +QVA+LVPTT+LAQQH + FR+R A +P+ IEM+SRFRS +Q Sbjct: 648 KTEVAIRAAFKAVQGGRQVAMLVPTTVLAQQHLNTFRERMAGYPIAIEMVSRFRSRADQK 707 Query: 694 QILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILT 753 +IL A G++DILIGTH++LQ DVKF+DLGL+I+DEE RFGV+HKE K MR+ VD+L+ Sbjct: 708 KILTATAAGQVDILIGTHRVLQHDVKFRDLGLVIIDEEQRFGVKHKEVFKQMRSTVDVLS 767 Query: 754 LTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVY 813 ++ATPIPRTL +A++G RDLS+I T P R ++T V+ YD +V +A+ E+ RGGQV+ Sbjct: 768 MSATPIPRTLYLALTGARDLSVIETAPTNRHPIQTVVKTYDEKLVIDAVRHELRRGGQVF 827 Query: 814 YLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 873 YL+N +E I A RL EL+P+ I +GHGQM +LE VM +F R+ +LVCTTIIE+ Sbjct: 828 YLHNRIETINLVAARLRELMPDVTIGVGHGQMEAADLEEVMTEFVAGRYQLLVCTTIIES 887 Query: 874 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAI 933 G+DIP NTI+IE AD FGL+QL+QLRGRVGR HQAYA+LL + A++RL A+ Sbjct: 888 GLDIPNCNTILIEGADRFGLSQLYQLRGRVGRFKHQAYAYLLLHRHTRLLDVARQRLTAM 947 Query: 934 ASLEDLGAGFALATHDLEIRGA---------GELLGE---------EQS-----GSMETI 970 LGAGF +A DLE+RGA G ++G QS G Sbjct: 948 RQHTQLGAGFRIAMRDLELRGAGNLLGAQQSGHIVGVGFELYCQLLRQSVARLKGEKTAA 1007 Query: 971 GFSLYMELLENAVDALKAGREP------------------------------------SL 994 ++L V + P +L Sbjct: 1008 AIRASVKLDFVIVGEAEGRAGPPLPAGKAKDAPATAPAASGIAALPSSARGRHQDGYTAL 1067 Query: 995 EDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLP 1054 D Q ++ + LP +IP+ R+ FY+++A A + +L+EI+ L DRFG + Sbjct: 1068 RDAEDAQVAELPKIQARLPAAYIPETRLRIDFYRKLAMADSPAKLKEIEAALQDRFGKIG 1127 Query: 1055 DPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLD 1114 R LL ++R A++ I +E K N +Q + RL Sbjct: 1128 PDVRALLLTTQIRILAEQTNILSVETEANRL------KCLRNSGRRDDWVQVGTRFPRLT 1181 Query: 1115 GPTRLKFIQDLSERKTRIEWVRQFMREL 1142 S R++ + F+ L Sbjct: 1182 A----------STPLLRLKEIIAFLHNL 1199 >UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superfamily II helicase) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DY76_METI4 Length = 1060 Score = 826 bits (2134), Expect = 0.0, Method: Composition-based stats. Identities = 305/776 (39%), Positives = 452/776 (58%), Gaps = 31/776 (3%) Query: 348 AANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKI 407 ++ L K + + + L+AL +++E VV V +EG L E+L I Sbjct: 289 ESHLFLDTPKGDWFYQERRWQLFLEALGRWIEK-QWEVVIFVNNEGEESRLKEILNNQGI 347 Query: 408 APQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLG----ERVARRRQDSRR 463 + ++I+ GF L+++ ++++ G +++ R Q Sbjct: 348 STEKIL-----------FSKSPLLRGFCWPEAKLSILTDAEIFGRYQNQKILLRSQQKND 396 Query: 464 TINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPV 523 + G VVHL+ G+ ++ G+ T+E G E + L + AKLYVP+ Sbjct: 397 YFRAPLGSDIFEQWKEGDIVVHLQKGICKFKGIKTIE--GTNTEMVELEFDQQAKLYVPI 454 Query: 524 SSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAF 583 HLI+RY GG ++ L LGG+ W +A++ A + V D+A +LL I A+R EGFAF Sbjct: 455 DQAHLIARYIGGTKKLPKLDSLGGNRWIKAKRAAQKAVTDLAEKLLKINAEREVLEGFAF 514 Query: 584 KHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 643 D + + F ++F +E TPDQ +AI DM MDRL+CGDVGFGKTEVA+RA F Sbjct: 515 PQDDQWQKEFEEAFIYEETPDQLKAIEETKKDMESKRPMDRLICGDVGFGKTEVAIRAIF 574 Query: 644 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK 703 AV KQ +L PTT+LA+QH++ R+RFA++P+ ++ RF E+ +ILA + EG Sbjct: 575 KAVMGGKQAVLLTPTTVLAKQHFNTLRERFADYPIHTALLCRFVKNSEEKEILAGLKEGT 634 Query: 704 IDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTL 763 +D+++GTH+LL +DV+FKDLGL+++DEE RFGV KE+ K +D+L L+ATPIPRTL Sbjct: 635 VDVVVGTHRLLSADVEFKDLGLIVIDEEQRFGVLQKEKWKEKFRFIDVLLLSATPIPRTL 694 Query: 764 NMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQ 823 +AM+G RD+S+I TPP R ++T V YD V+R+AI RE+ RGGQVY+L+N + I+ Sbjct: 695 YLAMAGARDMSLIETPPPNRFPIETIVGPYDERVIRQAIERELNRGGQVYFLHNRIRTIE 754 Query: 824 KAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 K A RL L+P +I IGHG+M++ ELE VM F + +VL+ T+IIE G+DIP ANTI Sbjct: 755 KVASRLKSLLPSIKIDIGHGRMKKHELEEVMERFVEGKIDVLLATSIIENGLDIPNANTI 814 Query: 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGF 943 II+RAD FGLA L+QLRGRVGRS+ +AYA+LL P + +DA+KR++A+ LG GF Sbjct: 815 IIDRADLFGLADLYQLRGRVGRSNQKAYAYLLLPRDLFIQSDAKKRIKAMQEHSQLGTGF 874 Query: 944 ALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTE 1003 +A DLEIRGAG LLG QSG + +IGF LY +LL+ A+ ++ E L + Sbjct: 875 QIALRDLEIRGAGNLLGTSQSGHIASIGFELYCKLLKKAIQKIQG---KETEPLIDCRLS 931 Query: 1004 VELRMP---------SLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLP 1054 ++ +P + +P ++ RL Y+++A A ELEEIK DR+G P Sbjct: 932 LDFLLPEPGGGRHALAYIPFSYMERRQERLHAYRQLAEASQPEELEEIKKSWKDRYGPWP 991 Query: 1055 DPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKN-HVNPAWLIGLLQKQPQ 1109 +P L + +R A + GI ++E + L++ +P+ Sbjct: 992 EPVEHLFSLVEIRIIAARKGIERVETERDKLKLIKNNDYLFTKQGKFPRLIEAEPK 1047 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 89/192 (46%), Gaps = 2/192 (1%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWE 74 + L + + +A + GP+++IA +++ + + + + L + E Sbjct: 52 RNCAIDSLPLSGQSFFLASFLRVYRGPLLVIAENIKKTNEIALGLECW-GSPYLILPEVE 110 Query: 75 TLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 +P +S P ++ RLST Y L G++I + + + L L + Sbjct: 111 PVPAESL-PDPTFLAERLSTAYSLLDFPSGIIITTEQAMEEALPSPELLKEKRLPLAVEN 169 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 194 R A+ +L +AGY VD V G++A RGA++D F S P R+++ + + SLR Sbjct: 170 SFDRKAVIEKLVTAGYERVDSVDCRGQFAVRGAIIDTFCWDSCYPLRMEWEGNRLISLRQ 229 Query: 195 FDVDSQRTLEEV 206 FD +QR+ + + Sbjct: 230 FDPITQRSFKPL 241 >UniRef50_B9KVH0 DEAD/DEAH box helicase domain protein n=2 Tax=Rhodobacter sphaeroides RepID=B9KVH0_RHOSK Length = 1059 Score = 821 bits (2121), Expect = 0.0, Method: Composition-based stats. Identities = 358/1101 (32%), Positives = 528/1101 (47%), Gaps = 66/1101 (5%) Query: 43 VLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM 101 + I D A + + + W+ LPYD SP D + R++ L + Sbjct: 23 LHITSDDARAEEIVRFLREIAPTLRPGLFPCWDCLPYDGASPTPDAMGRRMALLDAVRAR 82 Query: 102 QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGE 161 ++IV + L+QRV P + ++ G+ L ALR+ AGY D++ E GE Sbjct: 83 DVRLVIVGPSGLLQRVPPVEAMRR--FAVRAGETLDLGALRSFAARAGYVEDDRIDEPGE 140 Query: 162 YATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDK 221 A R ++++F G++ P R+ D + +R +D S R+LE+V I+LLP E P Sbjct: 141 IAFRAEVVEVFAAGADRPVRIGLQGDLVTGIRRYDPVSLRSLEDVPGIDLLPVTELPES- 199 Query: 222 AAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL 281 ++G P G E+ P + L L + + Sbjct: 200 -------------------------AFAEGPPPRGAEHLLPRAWP-ALAALPDHLGQGGI 233 Query: 282 LVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKT 341 V G L A + + LL P +L+L ++L L + L Sbjct: 234 SVTPGALAALRRARAQIEEAHRDRESLGEGEALL-PDALYLGEEDLAGILAQAETLDLS- 291 Query: 342 EHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGEL 401 G++ +P A + +A L + VV + AL Sbjct: 292 ------------GWEPVPAFAEDRRPRAALARFVRGQIGEGRRVVLLAATPRDLRALR-R 338 Query: 402 LARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDS 461 Q ++ GFVD A++ D+LG R A + Sbjct: 339 ATGAADPAQDWQDARATPQDVPAAILSTLARGFVDLPGRTAVVTARDVLGSRAAEDAAVA 398 Query: 462 RRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYV 521 + T L G VVH + G+GR G+ L E + L YA+D L V Sbjct: 399 AVSAWQGTP----DALAEGDLVVHEDRGLGRLQGLEPLPGADG-REAIRLGYASDQHLLV 453 Query: 522 PVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGF 581 PV I RY G + L +L G AW+ R+K E + + A L+ +RAAK Sbjct: 454 PVEEAGRIWRY--GTGADVSLDRLNGSAWTNRRKKLDEGIAEAARALVSAAKERAAKSAR 511 Query: 582 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 641 +F+ + Y+ F FPF + DQ +AI V D+ M+RLV GDVGFGKTE+A+RA Sbjct: 512 SFEPPPDIYERFAGRFPFTLSADQRRAIAEVRDDLVAGRPMNRLVLGDVGFGKTEIALRA 571 Query: 642 AFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE 701 A + QVA++ P+T+LA+QH + FR RF + V + +SR +KE + + Sbjct: 572 AAAVALSGAQVALVAPSTVLARQHAETFRRRFEGFGVTVAHLSRLVPSKEAKAARDGLRD 631 Query: 702 GKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPR 761 G I I++GTH LL V F DLGLLIVDEE RFG HK R++A+ A++ +LT+TATPIPR Sbjct: 632 GSIRIVVGTHALLGKGVAFADLGLLIVDEEQRFGAAHKARLRALGADLHVLTMTATPIPR 691 Query: 762 TLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVEN 821 TL A+ G++DLS IATPPARR AV+T E D+ V+R+A+LRE RGGQ + + + Sbjct: 692 TLQTALVGLQDLSEIATPPARRRAVRTLTAEDDAAVLRQALLRERRRGGQSFVIVPRIAE 751 Query: 822 IQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 I RL +L+PEA++ + HG + EL+R M +F R ++L+ T+I+ETG+D+P AN Sbjct: 752 IDATEARLRDLLPEAQLRVAHGDLAPEELDRAMVEFAAGRGDILLATSIVETGLDVPRAN 811 Query: 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGA 941 T+I+ + FGLAQLHQLRGRVGR QAY +L+ + A +RL + + + LGA Sbjct: 812 TMIVMQPQLFGLAQLHQLRGRVGRGARQAYCYLMHGPGDDLDEAALRRLGTLQAFDRLGA 871 Query: 942 GFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQ 1001 G A+A DL+ RGAGEL GE QSG + IG LY LL AV A + E T+Q Sbjct: 872 GAAIAAEDLDQRGAGELFGERQSGHVRLIGLPLYQHLLAQAVRAARG------EPPTAQH 925 Query: 1002 TEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLL 1061 + + LP D+IP+ RL Y+R+A A E+ + E+ DRFG P A LL Sbjct: 926 VSLAMEGDGALPADYIPEAGLRLGLYRRLARAADPREVALLADEIEDRFGPPPAAAAGLL 985 Query: 1062 DIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKF 1121 A +R A+ LGI ++ G ++ A V + P+ L+G + Sbjct: 986 VAAEIRALARSLGIERVSAGPSGVALDLAPDACVE-----RFAEDLPEGVTLEGR---RL 1037 Query: 1122 IQDLSERKTRIEWVRQFMREL 1142 ++ + +R+L Sbjct: 1038 LRQEETDEDAARRALDLLRDL 1058 >UniRef50_C6B9D3 DEAD/DEAH box helicase domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6B9D3_RHILS Length = 1072 Score = 821 bits (2120), Expect = 0.0, Method: Composition-based stats. Identities = 340/1129 (30%), Positives = 536/1129 (47%), Gaps = 83/1129 (7%) Query: 30 LVAEIAERHAGPVVLIAPDMQNALRLHDEISQ-FTDQMVMNLADWETLPYDSFSPHQDII 88 LVA + R + +A A ++ D +S F D ++ L W+ LPYD P Q + Sbjct: 6 LVASL-RRSERSLCYVALSEGAATKIADAVSALFPDIEIIVLPPWDCLPYDRVPPSQRCM 64 Query: 89 SSRLSTL--YQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLD 146 R+ L + +P+ + + ++ +QR+ P + + L + G+ RDA + Sbjct: 65 GLRMDALRIWSMPSDAPRLFLTSLDATLQRIPPATVIANSRLELVVGKAFDRDAFSDFIQ 124 Query: 147 SAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFF-DDEIDSLRVFDVDSQRTLEE 205 GY + GE A R ++D++P G+ P R+ DD + LR FD SQRT Sbjct: 125 RTGYVEEGVADDPGELAVREGVIDIYPAGAPGPLRIVLSKDDSVLELRGFDRVSQRTESY 184 Query: 206 VEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFF 265 + + PA E + E F V R +YQ Sbjct: 185 FDKVIFGPASEAILTEGITEEFVPTSD---TVMRLLLRLYQD------------------ 223 Query: 266 SEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVD 325 +P +F + T+++ G + + AR + + +SL+L Sbjct: 224 ---MPTVFDFLGDATVVLAPGAADQVERYLEIVDDARQSRKDFGEVEA-PSSRSLYLDRA 279 Query: 326 ELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLE---TFD 382 E E + + L ++ DL +A P AL +++ Sbjct: 280 EW--------------ERQASSVSARELDLEEGGDLPTEASDTYPRTALINWMQDCLRHG 325 Query: 383 GPVVFSVESEGRREALGELLARIKIAPQRIMRLDEA--SDRGRYLMIG-AAEHGFVDTVR 439 VV S + G L APQ I + ++ G L + + GF+D Sbjct: 326 LKVVISGKGNGSEALCRRLGQATGTAPQSIDTWEAVLKAEPGTVLKLACELDQGFIDVTE 385 Query: 440 NLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTL 499 +A++ +D T + + + EL IG VVH +HGVG + ++ Sbjct: 386 RIAVVAAAD------------GISTASNCSTLLVEPELRIGDVVVHEDHGVGVLRDLESI 433 Query: 500 EAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAE 559 + + L Y + + VP+ + RY G E L +L AW R+K A Sbjct: 434 AVENVCRDAARLEYRDGDSVLVPMEEFGKLWRY-GSEPEAVTLDRLHTAAWQNKREKIAA 492 Query: 560 KVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQP 619 ++ A L+ + R A AF R + F FPF T DQA+AI +VLSD+ Sbjct: 493 DIQSTARHLIKLAKHRQASRAEAFVPPRAGFSAFTRRFPFTETHDQAEAIRSVLSDLATG 552 Query: 620 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 AM+RLVCGDVGFGKTE+A+RAA QV V+ PTT+L +QH+ F RFA V Sbjct: 553 RAMNRLVCGDVGFGKTEIALRAAAAVALAGGQVVVIAPTTVLTRQHFATFTRRFAGTGVS 612 Query: 680 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK 739 + M+SR +E ++ A +A G+I +++ T +L DV+F L L+IVDEEHRFG++ K Sbjct: 613 VGMLSRLLKPREAKKVKAALAVGEIGVIVTTQAILAKDVRFAHLALVIVDEEHRFGLKEK 672 Query: 740 ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVR 799 + + ++ L ++ATPIPRTL AM G+ ++S++ TPP RR V+T + +D +R Sbjct: 673 RAMNTLVPSLHTLAMSATPIPRTLQSAMVGVHEVSLLTTPPFRRRPVRTSLSVFDHASMR 732 Query: 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 ++RE RGGQ + + +E+I L ++VPE + + HG M ++ + F Sbjct: 733 TGLMREKRRGGQSFVVVPRIEDIDVVKTILRKIVPELSVKVAHGDMPAAAIDEAIVGFAE 792 Query: 860 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 +VL+ T IIE G+D+P ANT+ + +AD FGLAQLHQLRGRVGR Q A LLT + Sbjct: 793 GDGDVLLATNIIENGLDVPRANTMFVWQADRFGLAQLHQLRGRVGRGGAQGIATLLTENA 852 Query: 920 KAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELL 979 + ++ + + RL + + LGAG +++ DL++RG G++ GE+Q+G M+ IG LY +LL Sbjct: 853 E-LSDETRLRLSTLVENDRLGAGLSISLRDLDLRGGGDIAGEDQAGHMKVIGIGLYQKLL 911 Query: 980 ENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENEL 1039 AV L+ ++P+ T + V L + +P D++ D RL+ Y ++ A T +E+ Sbjct: 912 AGAVARLR--KQPAG---TPLRAIVNLGVAGTIPSDYVSDPAVRLNLYAKLLRASTLSEM 966 Query: 1040 EEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAW 1099 ++++ E DRFG LP LL RL+ A +LGI KLE K + K PA Sbjct: 967 DDLEEEFEDRFGELPQDVLLLLRTTRLQLAAGRLGIAKLEAGPKALAMTLTPKT---PAK 1023 Query: 1100 LIGLLQKQPQHYR-----------LDGPTRLKFIQDLSERKTRIEWVRQ 1137 +I L K+ R + G +L F + + R ++ Q Sbjct: 1024 VIAALTKKAGAVRRVDRLIFEASNMTGEEQLLFFERVVPAANRPKFRNQ 1072 >UniRef50_B5YL15 Transcription-repair coupling factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YL15_THEYD Length = 1042 Score = 820 bits (2119), Expect = 0.0, Method: Composition-based stats. Identities = 316/862 (36%), Positives = 520/862 (60%), Gaps = 17/862 (1%) Query: 283 VNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTE 342 + D + S + + + E + ++ + L + + + K + V++ Sbjct: 188 LFYPDTQRSFKDKNEIWIIQAEEKEINNIELLELFEFDNIFTVDKNFTNKKFNIVKISHL 247 Query: 343 HLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELL 402 + + + G + L + +++ + + L+ P++FS+ S G+ E + E+L Sbjct: 248 PVKFSTKSVDAGDKTFYGLGILPNERSSILDFPRNLKKLGIPIIFSISSRGKAETIKEVL 307 Query: 403 ARIKIAPQRIMRLDEASDRGRY-LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDS 461 I I + + + G+Y + I + GF NL +I + +L GE+ ++++ + Sbjct: 308 FNHDIIAPLIHKNEIGTYSGKYAITISDLQEGFY--RENLMIITDFELFGEKTLKKKKLA 365 Query: 462 RRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYV 521 + + D L E++ G +VH EHG+G + G+ + G + L+L Y + LYV Sbjct: 366 IQKLPIDGL-----EINEGDYIVHKEHGIGIFRGIKRQKYEGTEEDVLVLEYKDGDILYV 420 Query: 522 PVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGF 581 P ++ I RY+ P+ KLG + W +A+++ +++ D+A +L+ +YAQR + GF Sbjct: 421 PTWNIGKIYRYSAKEGFIPPIDKLGSNRWQKAKERERKRIHDIADKLIKLYAQRKTERGF 480 Query: 582 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 641 + D E ++ F D FP+E T DQ +AI+A+L M +P M+ L+CGD G+GKTEVAMRA Sbjct: 481 IYSEDTEIHKNFDDFFPYEETEDQQKAIDAILKKMREPFPMEVLLCGDAGYGKTEVAMRA 540 Query: 642 AFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE 701 +F AV + KQVAVLVPTTLL +QHY F+ RF +PV+IE +SRFRS KE +++ + Sbjct: 541 SFRAVYDGKQVAVLVPTTLLCEQHYRTFKKRFEAFPVKIEYLSRFRSEKEIKKVIEDTKL 600 Query: 702 GKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPR 761 GK+DILIGTH ++ +V F DLGLLI+DEE +FGV HKE+IK VD++T+TATPIPR Sbjct: 601 GKVDILIGTHIIILKEVDFFDLGLLIIDEEQKFGVIHKEKIKEKYPKVDLITITATPIPR 660 Query: 762 TLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVEN 821 TL + +SG+ D+ +I TPP RLAVKTFV + + ++++EAI +EI RGGQ+Y+L+N + + Sbjct: 661 TLQIGLSGLWDIFVIQTPPKERLAVKTFVIQENELIIKEAIEKEIQRGGQIYFLHNRIHD 720 Query: 822 IQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 I+ ++ +LVP ARI + HG+M+E+ L+++M DF + + ++L+CT+II +G+DIP N Sbjct: 721 IELVKSKIQKLVPMARIGVAHGRMKEKMLDKIMLDFIYGKIDILLCTSIIASGLDIPNVN 780 Query: 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGA 941 TIII++A FGL+ L+Q+RGRVGRS+ QA A+L+ P + ++ DA+KR++AI + LGA Sbjct: 781 TIIIDQAQTFGLSDLYQIRGRVGRSYRQANAYLVIPPEEILSEDAKKRIKAIQEMSYLGA 840 Query: 942 GFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQ 1001 GF +A DLEIRGAGELLG EQSG + +GF LY+E+L AV +K P+L+ Sbjct: 841 GFHIALRDLEIRGAGELLGVEQSG-VNRLGFDLYIEMLNEAVKEIKGEVLPALK-----L 894 Query: 1002 TEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLL 1061 E++ +P+ +P+++I + R+ Y++++ ++E+E++ E+IDRFG+ P + Sbjct: 895 PEIKFSIPAFIPEEYIKETPMRIRIYRKLSQISEDSEIEKLYDEIIDRFGMPPKEVENIF 954 Query: 1062 DIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKF 1121 IAR+R K I+ E +K +F + +++ ++ LL LKF Sbjct: 955 KIARIRLLVSK--IKASEVKQKKNTFKFKMEENLDTGFVNRLLHILTGFKNRGIIKNLKF 1012 Query: 1122 IQD-LSERKTRIEWVRQFMREL 1142 QD ++ + F++ L Sbjct: 1013 YQDGFEVNIEELDGLILFLKRL 1034 Score = 139 bits (351), Expect = 5e-31, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 99/227 (43%), Gaps = 30/227 (13%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-----QMVMNLADW 73 + L+ + + + ++ + A +L+ F+ ++ L Sbjct: 32 IYNLSITSFSLFICFY----KNNFIVFEENEDQAAKLYAAFKTFSSFFNTTDEIVFLPSK 87 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKG 133 T R+ ++++ + +I V++ ++ P H + +KKG Sbjct: 88 GT--------------ERMIAIFKILNERNKKIITTVDSA--KIPP----HIETINIKKG 127 Query: 134 QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193 + R+ L L + GY V+ V + GE++ G + D++ +G E P R++FF DEI+ ++ Sbjct: 128 GTIEREFLAKNLINLGYSKVELVTQEGEFSEHGWVFDIWGIGEEYPARIEFFGDEIEEIK 187 Query: 194 VFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 +F D+QR+ ++ I ++ A E + + ++ + F V ++ Sbjct: 188 LFYPDTQRSFKDKNEIWIIQAEEKEINNIELLEL-FEFDNIFTVDKN 233 >UniRef50_C7CIQ8 DEAD/DEAH box helicase domain protein n=9 Tax=Alphaproteobacteria RepID=C7CIQ8_METED Length = 1111 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 340/1132 (30%), Positives = 526/1132 (46%), Gaps = 70/1132 (6%) Query: 28 ATLVAEI-AERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQ 85 A VA + + A P++ +A D + + + + V +W+ LP+D SP + Sbjct: 29 ALAVALLGFAQAARPLIHVARDGRRLDEIAAVLLALAPERTVAVYPEWDCLPFDRASPSR 88 Query: 86 DIISSRLSTLYQLPTM--QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRT 143 ++ +R L L Q +++ L+QRV P + ++ G+ L + L Sbjct: 89 GVMGARTGVLRWLTDDRAQPDIVLTTAPALLQRVPPPETWESAHIELRVGEPLDAEQLTA 148 Query: 144 QLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTL 203 QL GY D+V E GE A RG +D+FP + LP R++ I ++R +D SQR+ Sbjct: 149 QLARLGYILDDRVDEPGEVAVRGRTIDVFPAAAPLPCRVEHDGARITAIRSYDPVSQRSR 208 Query: 204 EEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPL 263 E E + + PA E D + G E+ Sbjct: 209 VETERLVIDPATEIILDPDSGLALEP------------------------FTGQEHRLAR 244 Query: 264 FFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDP------MRPLLPP 317 F+ L + Y P L+V G E +A F+ R + P R P Sbjct: 245 FYP-ALVTMLDYVPEARLVVEAGVEERAAAFFEQIAEGREAEGAMSPSGSRRDDRSQQTP 303 Query: 318 Q-SLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRK 376 L+L E L + A P + + +A + Sbjct: 304 APDLYLAPKEWAKLLDARSLAAATSAEAERIAG---------PVFVRERRPEAAFAKALR 354 Query: 377 FLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE--ASDRGRYLMIG-AAEHG 433 VV + R + A + + I E A++ G L I E G Sbjct: 355 AALKVGERVVLAGPKAPLRRLVRAAAAADERTVRLIDGWAEVEAAEPGAMLAIEMPVEAG 414 Query: 434 FVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRY 493 F +I +DL G + L EL +G + +HG+ + Sbjct: 415 FRVPQAGATVIAAADLFG------PLAAGAGRRAAVLPIGEVELRVGDVSIDRDHGLCLF 468 Query: 494 AGMTTLEAGGI-TGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSR 552 G+ + G + L L +A+DA L VPVS I RY G E L +L G W+R Sbjct: 469 EGLEAIRGGEEDEEDALRLRFADDAILMVPVSQADRIWRY-GSEAEAVTLDRLDGGTWAR 527 Query: 553 ARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAV 612 R +A + A +L +R + + F F + T DQA A+ Sbjct: 528 RRLEAEATLAKAARAMLKAAQERREAHAPQIVPPEREMERFAAGFGYPLTGDQAGAVEET 587 Query: 613 LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDR 672 L+D+ + + MDRLVCGDVGFGKTEVA+RAA A+ +Q+AV+ PTT+L +QH + FR R Sbjct: 588 LADLAREMPMDRLVCGDVGFGKTEVALRAAAAAIFAGRQIAVMAPTTVLVRQHVETFRRR 647 Query: 673 FANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH 732 FA + + + +SR S E ++ +A+G + +++GT L V F DLGL I+DEE Sbjct: 648 FARFCIEVAHLSRLVSPAEAKRVKQGLADGSVRLVVGTQALAGRGVSFHDLGLAIIDEEQ 707 Query: 733 RFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE 792 RFG + K ++ + ILTL+ATPIPRTL AM G++ LS+IATPPA R ++T + Sbjct: 708 RFGAKTKASLRKAAGDAHILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTVIAP 767 Query: 793 YDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 852 ++ + A+ RE RGGQ + + +E+I A+RL LVP + HG+M+ E++ Sbjct: 768 FEESTLAAALRREHRRGGQSFVVCPRIEDIAPMAKRLHALVPGLDVVTAHGEMKPAEMDD 827 Query: 853 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 M F +VL+ T+IIE+G+D+P ANT+++ A+ FGLAQLHQLRGRVGR + Sbjct: 828 AMVRFADGNGDVLLATSIIESGLDVPRANTMLVWDAERFGLAQLHQLRGRVGRGQRRGVV 887 Query: 913 WLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF 972 +L K ++ +KRL + +L+ LGAGFA++ DL++RGAG+L+G++QSG ++ +G Sbjct: 888 YLFGHPDKPLSHSTEKRLRTLEALDRLGAGFAISARDLDLRGAGDLVGDDQSGHVKLVGL 947 Query: 973 SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIAS 1032 LY LL+ A+ A K E EV + + +P D+IP+ RLS Y R+ Sbjct: 948 GLYQHLLQLALRAAKG------EAAEDWSPEVRIGLNGRVPADYIPEPEIRLSLYTRLLR 1001 Query: 1033 AKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEK 1092 + E E++ ++ E+ DRFG LP+ L +ARLR LGI +L G +G +F Sbjct: 1002 LRAEAEIDALRDEIEDRFGPLPESVDALFTLARLRIGCLALGIVRLSGGPQGIAADFHPD 1061 Query: 1093 NHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 H + + + R+ + R F+R L++ Sbjct: 1062 RHAPVIPVSEEITVR--------DRRIVIRGGCDDAVERGARAAVFLRRLQD 1105 >UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Tax=Bacteria RepID=C4DT42_9ACTO Length = 1356 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 313/672 (46%), Positives = 437/672 (65%), Gaps = 14/672 (2%) Query: 423 RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQP 482 + +G HG VD LA++ D+ G + A R R + L EL G Sbjct: 623 VTVTVGGLSHGIVDEAAKLAILTGDDISGGKGATTRDMRRMPSRRKGGVNPL-ELSNGDY 681 Query: 483 VVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA------NDAKLYVPVSSLHLISRYAGGA 536 VVH +HGVGRY + G EYL++ YA +L+VP +L ++RY GG Sbjct: 682 VVHEQHGVGRYIELVRRTVNGAEREYLVIEYAASKRGQPADRLFVPTDALDQLTRYVGG- 740 Query: 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596 E +HKLGG W +A+ +A + VR++AAEL+ +YA R A EG AF D + D+ Sbjct: 741 -EMPSVHKLGGSDWQKAKSRAKKAVREIAAELIKLYAARQATEGHAFGPDTPWQRELEDA 799 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 FP++ TPDQA AI+ V SDM MDRL+CGDVG+GKTE+A+RAAF AV + KQVAVLV Sbjct: 800 FPYQETPDQAGAIDEVKSDMMGRTPMDRLICGDVGYGKTEIAVRAAFKAVTDGKQVAVLV 859 Query: 657 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS 716 PTTLLA QH + F +R + +PV I+ +SRF++ E QI + G++DI++GTH+LLQ+ Sbjct: 860 PTTLLASQHLNTFTERMSQFPVTIKQLSRFQTDAEAEQIRKGLIAGEVDIVVGTHRLLQT 919 Query: 717 DVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 776 + +FKDLGL+IVDEE RFGV HKE++KA+RA+VD+L ++ATPIPRTL MA++G+R++S I Sbjct: 920 ETRFKDLGLVIVDEEQRFGVEHKEKLKALRAHVDVLAMSATPIPRTLEMAITGIREMSTI 979 Query: 777 ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 TPP R V TFV Y+ V AI RE+LR GQV+YL+N VE+I+KAA RL E+VPEA Sbjct: 980 TTPPEERHPVLTFVGGYEDKQVGAAIRRELLRDGQVFYLHNRVESIEKAATRLREIVPEA 1039 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 R+ + HG+M E LE++M DF + F+VLV TTIIE+GIDIP ANT+I+ERAD GL+QL Sbjct: 1040 RVVVAHGKMGENRLEQIMQDFWNGEFDVLVSTTIIESGIDIPNANTLIVERADLLGLSQL 1099 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 HQ+RGRVGR +AYA+ + P K +T A +RL +A +LGAG +A DLEIRGAG Sbjct: 1100 HQIRGRVGRGRERAYAYFMYPPEKPLTEQAHERLATVAQHTELGAGMYVAMKDLEIRGAG 1159 Query: 957 ELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 LLG EQSG + +GF LY+ ++ +AV K +E L + +++L + + +P D+ Sbjct: 1160 NLLGGEQSGHIAGVGFDLYVRMVGDAVRTFKGAKEEIL-----TEVKIDLPVDAHIPYDY 1214 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076 IP RL Y+++A + + EL+E++ E+ DR+G LP L+ +AR R A+ G+ Sbjct: 1215 IPVERLRLEMYRKLAEVRDDAELDEVRTEMADRYGDLPAEVDNLVHVARFRLLARAAGLS 1274 Query: 1077 KLEGNEKGGVIE 1088 + + + Sbjct: 1275 DVSLQGRHIRLS 1286 Score = 222 bits (566), Expect = 7e-56, Method: Composition-based stats. Identities = 86/441 (19%), Positives = 153/441 (34%), Gaps = 48/441 (10%) Query: 24 GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLPYDSFS 82 AA VA +A+ V+ + + L ++ V WETLP++ S Sbjct: 42 AAARPFTVAALAQA-ERTVLAVTATSREGEELTQSLAGLLPDGSVAFYPAWETLPHERLS 100 Query: 83 PHQDIISSRLSTLYQLPTMQRG---VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRD 139 P D + RL+ L++L Q V++ PV +L+Q + + G+ Sbjct: 101 PRSDTVGKRLALLHRLAHPQGAPLRVVVAPVRSLLQPQL-KGLGDLKPVRLAVGESTDLS 159 Query: 140 ALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDS 199 L +L Y VD V + GE+A RG +LD+FP E P R++FF DEI+S+R F V Sbjct: 160 DLAAELSDLAYARVDLVEKRGEFAVRGGILDIFPPTDEHPSRVEFFGDEIESIRSFAVAD 219 Query: 200 QRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEY 259 QR+L++ + + P E R + + + + +Q+++G G+E Sbjct: 220 QRSLDKADTLFAPPCRELLLSP----RVRERAAELGQQHPGLAELCEQLAQGIPVEGMES 275 Query: 260 WQP-LFFSEPLPPLFSYFPANTLLV--NTGDLETSAERF----QADTLARFENRGVDPMR 312 P L ++ L P T++V + + + A + A + Sbjct: 276 LTPALLGADQLELFVQTMPRGTVVVQCDPERIRSRAHDLVATSEEFLQASWAAAATGGKA 335 Query: 313 PLLPPQSLW----------------------------LRVDELFSELKNWPRVQLKTEHL 344 P+ + + L +L + ++ E Sbjct: 336 PIDLDAAAFKSLSDVRQAASDHGCPWWSMGPFGVTEDLSPAQLEERKRARELAEITGEGF 395 Query: 345 PT--KAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELL 402 A ++ P ++++ V G E E L Sbjct: 396 EELVVADETSVTVTATPAPLYHGNSVKVTGDVKRWTND-GWRVCLVFAGHGLAERAVEQL 454 Query: 403 ARIKIAPQRIMRLDEASDRGR 423 A + + GR Sbjct: 455 AEAGVGASLADSVTRPDSDGR 475 >UniRef50_Q89AK2 Transcription-repair-coupling factor n=3 Tax=Gammaproteobacteria RepID=MFD_BUCBP Length = 697 Score = 813 bits (2101), Expect = 0.0, Method: Composition-based stats. Identities = 372/677 (54%), Positives = 498/677 (73%) Query: 468 DTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLH 527 + I +L++L I QP+VH EHGVGRY G+TT+ I E +++ YA ++KLYVP++ L+ Sbjct: 21 EKNICDLSKLKINQPIVHFEHGVGRYQGLTTVTTRNIKTECVVINYAQNSKLYVPITYLY 80 Query: 528 LISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 587 LISRY G ++++ PLH+LG D W++ ++KA EK D AA LL+IY+ R +++GF+FK Sbjct: 81 LISRYIGTSKKDIPLHRLGNDLWNKEKKKANEKAYDSAAILLNIYSHRISQKGFSFKKHH 140 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 +Y++FC+ FPF TPDQ AIN+VLSDM + MDRLVCGDVGFGKTEVAMRA FLAV Sbjct: 141 TKYKIFCERFPFTLTPDQDSAINSVLSDMYKSTPMDRLVCGDVGFGKTEVAMRATFLAVC 200 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 N KQVA+LVPTTLLAQQH++NF RF W +IE++SRF+S + +I+ V G + +L Sbjct: 201 NQKQVAILVPTTLLAQQHFNNFTLRFKYWSTKIEILSRFQSETKCNEIINNVNIGNVHVL 260 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 IGTHK+L ++K+K+LGLLIVDEEHRFGV HKE+IK + N+D+LTLTATPIPRTLNMA Sbjct: 261 IGTHKILLKNLKWKNLGLLIVDEEHRFGVHHKEQIKLISNNIDVLTLTATPIPRTLNMAF 320 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 G+RDLSIIATPP +RL VKTFVRE+ V+R+AILREILRGGQVYY+YN+V I++ Sbjct: 321 VGIRDLSIIATPPKQRLIVKTFVREFSYTVIRKAILREILRGGQVYYIYNNVNKIERKKI 380 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 L +LVPEA I IGHGQ+R +LE +MNDF+H+RFNVLVC+TIIETGIDIP NTIIIE Sbjct: 381 ELKKLVPEANIRIGHGQLRSTDLESIMNDFYHKRFNVLVCSTIIETGIDIPNVNTIIIEN 440 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 A++FGLAQLHQLRGRVGRS HQAYAWLL P K + +DA+KR++AI S+E G+ F LA Sbjct: 441 ANNFGLAQLHQLRGRVGRSQHQAYAWLLVPSLKDIKSDAKKRIDAITSIESFGSCFELAN 500 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR 1007 DLEIRG GE+LG QSG + IGFSLYM+LL NAV +K G L D+ + ++EL Sbjct: 501 RDLEIRGIGEILGNNQSGHITKIGFSLYMKLLMNAVRNIKNGYYKPLNDIINTYPKIELN 560 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 + +LLPD +I VN RL FY +IA++ +LE+I++ L FG LP+ L+ IA++R Sbjct: 561 VSNLLPDSYIKKVNHRLFFYNKIATSNNFLDLEKIRLTLCKNFGNLPNSGDYLIKIAKIR 620 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE 1127 ++K+G++K++ + KGG IEF E + +N L+ +K+ ++ D RL+F ++ Sbjct: 621 LISKKIGVKKIKSDVKGGYIEFFEDSKINIQNLLKEFKKEKNCWKFDTSNRLRFSKNFKN 680 Query: 1128 RKTRIEWVRQFMRELEE 1144 RI+W+ + + Sbjct: 681 NSERIDWILNMLININN 697 >UniRef50_C7NE08 Transcription-repair coupling factor n=4 Tax=Fusobacteriaceae RepID=C7NE08_LEPBD Length = 1068 Score = 806 bits (2083), Expect = 0.0, Method: Composition-based stats. Identities = 332/1063 (31%), Positives = 551/1063 (51%), Gaps = 115/1063 (10%) Query: 78 YDSFSPH-QDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 +++ S + +DI + L L ++ +L V +Q F + G+ Sbjct: 100 FENISQNKEDITGINIRLLDILKNQEKFILFVN----LQITLDIFFEKVKFFSFEIGKEY 155 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 S + L GY + + G+Y+ RG +LD+FP E P RL+FF DE++S+RVFD Sbjct: 156 SFSKIVKFLVENGYETSYLIEKKGQYSRRGDILDIFPPDLENPVRLEFFGDELESIRVFD 215 Query: 197 VDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAG 256 +DSQ ++E++E I + + IEL + + + E Sbjct: 216 IDSQISVEKMEEIKVFGNLLSGNNYELIELIDELKAEDVTIAIENEE------------- 262 Query: 257 IEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLP 316 L Y +L++ ET +R++ Sbjct: 263 ---------------LLDYKMEEFILLDRSREETYRKRYEN------------------- 288 Query: 317 PQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRK 376 L+ +F + KN+ + Q++T +L L+ ++ K Sbjct: 289 -----LKKKSIFVQTKNFSQEQIETFR----------DKNRLEKLSKIEDIYIFTNSYEK 333 Query: 377 FLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVD 436 + F + E E L I D + + Sbjct: 334 KMAEFGQ---ILTDKENNLEIEKYELFEGFIFNDNSENPDNKNRKN-------------- 376 Query: 437 TVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGM 496 N ++ + +L G + ++ + + ++ G V+H+++GVG Y G+ Sbjct: 377 ---NFIVLTDRELDG-----YIYERKKKTAKAIKYKKVNQIIEGDYVIHVQYGVGIYKGI 428 Query: 497 TTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQK 556 T+E +YL + YA++ LY+PV L + +Y E L +LG + R R+K Sbjct: 429 QTME----ERDYLKIKYADEDILYIPVEKLDRLEKYVSNDTE-PQLFRLGTRGFKRKRKK 483 Query: 557 AAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDM 616 E ++ AAEL+ I A+R ++ GF ++ D + F +FPFE T DQ AIN V DM Sbjct: 484 LEEDIQKFAAELIKIQARRQSQNGFVYQKDTVWQEEFEANFPFEETEDQRNAINDVKKDM 543 Query: 617 CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANW 676 P MDR+VCGDVG+GKTEVAMRAAF A+DN KQV ++ PTT+LA+QH++ F+ RF N+ Sbjct: 544 ESPQIMDRIVCGDVGYGKTEVAMRAAFKAIDNGKQVVMVAPTTVLAEQHFERFKRRFENY 603 Query: 677 PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGV 736 P+ IE +SR +K T IL + G ID++IGTH+LL DV+FK+LGLLI+DEE +FGV Sbjct: 604 PITIENLSRLTKSKS-TDILKNLKNGIIDLVIGTHRLLSDDVQFKNLGLLIIDEEQKFGV 662 Query: 737 RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSM 796 + KE++K+ R +D+LTLTATPIPRTLN+AM G+R++SII TPP RL + T + ++D Sbjct: 663 KAKEKLKSQREKLDVLTLTATPIPRTLNLAMLGIREISIIDTPPTNRLPIITEILDWDEE 722 Query: 797 VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE-ARIAIGHGQMRERELERVMN 855 +++ AILRE+ R GQV+Y+YNDV+N+++ + L E++P+ +I +GQ+ +E++ + Sbjct: 723 IIKMAILRELSRDGQVFYIYNDVKNMKEKLKELKEMLPDFVKIEFINGQLPPKEIKDKLL 782 Query: 856 DFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLL 915 F + +F++L+ +TIIE GID+ ANTI+IE GL+Q++QL+GRVGRS+ Q Y +LL Sbjct: 783 RFENGQFDILIASTIIENGIDVGNANTILIENFTGLGLSQVYQLKGRVGRSNRQGYCYLL 842 Query: 916 TPHPKAMTTDAQKRLEAIASLEDLGA-GFALATHDLEIRGAGELLGEEQSGSMETIGFSL 974 + +T +++ E++ +E + + GF ++ DL+IRGAGE+LG++Q G++ET G+ L Sbjct: 843 --KTRNITKQGRQKEESMLKVEGIKSGGFQISMEDLKIRGAGEILGDKQHGTIETFGYDL 900 Query: 975 YMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK 1034 Y+++L + K +E E+ L +P+ +I + + RL+ YKR A + Sbjct: 901 YIKMLNEEIRKQKGEFIEKIE-----NVEIILDERGFIPETYI-EKDERLNIYKRFAMLE 954 Query: 1035 TENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH 1094 T++EL ++ E+ DRFG +P+ + + +L+ A+K I+++ + F E Sbjct: 955 TDSELTDLLDEIRDRFGKIPEQMKKFILSIKLKLFAEKHKIQRILETRNHFELYFLENAQ 1014 Query: 1095 VNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQ 1137 +I L + + ++ I+ + +K E + Sbjct: 1015 ---EKIIEL----NKKISMQLVEKVITIESIKNKKKSDEETNE 1050 >UniRef50_Q1YKV9 Putative transcription-repair coupling factor n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YKV9_MOBAS Length = 1128 Score = 791 bits (2044), Expect = 0.0, Method: Composition-based stats. Identities = 350/1152 (30%), Positives = 530/1152 (46%), Gaps = 75/1152 (6%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF-TDQMVMNL 70 ++G +R+ A ++A P++ IA + + S V L Sbjct: 20 RSGNKRVFPLHPIGVVAAMIARRVSDDRRPLIYIAETGRRRHDIFALASILAGPGTVCEL 79 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQLP--TMQRGVLIVPVNTLMQRVCPHSFLHGHAL 128 + P D +R++ L L + VLI L+++V P S G Sbjct: 80 DAPDGFPGDGLPVTVATAGNRMAMLRWLLDEEKRPSVLITTPAALIRKVPPKSVWEGLHS 139 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 ++ G+ L + AL+ +L GY D+V E GE A RG +L++FP + P R++ D Sbjct: 140 EIRVGETLDQTALQAKLQHLGYWLDDRVDEPGEAAFRGKVLEIFPAAAPRPCRIEHEDGV 199 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQV 248 + ++R +D SQR++ E + + + PA E D Q++ Sbjct: 200 VTAIRSYDPVSQRSVSETDCLIVDPASEIV------------------GADDGATGRQEI 241 Query: 249 SKGTLPAGIEYWQPLFF--SEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENR 306 TL G + E +F Y +++ TG + E F D L R + Sbjct: 242 DGETLQTGAPDSERFLCRQYERPETVFDYLQDADMVLETGAEIRADEVF--DALQRIDA- 298 Query: 307 GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQ 366 DP R + L + + W + + + + + V A Sbjct: 299 -DDPHRHAVLADHL---------DRETWDTL------VAERVTALVDDVEADYSVPVFAT 342 Query: 367 QKAPLDALRKFLETF--DGPVVFSVESEGR-----REALGELLARIKIAPQRIMRLDEAS 419 ++ P AL F+E +G + +GR G L + + +A+ Sbjct: 343 ERQPYKALASFVEPLRDEGYRIVLAGPDGRVMRSAARKAGTALDGVFEPAANWDAICDAA 402 Query: 420 DRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHI 479 L GFV +A+I +L G++ A P + Sbjct: 403 PSSLLLFDAPITQGFVAAESGVAVISLRNLEGQKAAAAVAGPSDGFAPQ-----VDTFMT 457 Query: 480 GQPVVHLEHGVGRYAGMTTLEAGG----ITGEYLMLTYANDAKLYVPVSSLHLISRYAGG 535 G VVH+EHGV G+ ++ G GE L L Y ND L VP+S + + R GG Sbjct: 458 GDRVVHIEHGVAVLDGLVPIDPNGNGGDPEGEALSLRYRNDETLLVPMSDIGAVWR-CGG 516 Query: 536 AEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCD 595 A + L L G W + R + + A +++ ++A + DR ++ FC Sbjct: 517 ASTDVTLDDLKGRTWQKRRDEIFGAISVTADRMVERLTEKAEAKAPKIVPDRVSFERFCA 576 Query: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655 F +E T DQ A VL D+ M+RLVCGDVG+GKTEVA+RAA AV + +QVAV+ Sbjct: 577 RFAYELTADQNNACLDVLDDLASGRPMERLVCGDVGYGKTEVALRAAAAAVFSGRQVAVI 636 Query: 656 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 715 PTT+LAQQH+ F RF V I +SR E A + +G I++GTH +L Sbjct: 637 APTTVLAQQHFREFSARFGAQGVEIVRLSRLVGKDEADAAKAAMQDGTAKIVVGTHAILS 696 Query: 716 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 775 DV F DL L+I+DEE RFG K ++ + V ILT+TATPIPRTL G+ DLSI Sbjct: 697 GDVAFDDLALVIIDEEQRFGSEQKAAMRTLADGVHILTMTATPIPRTLQSGFVGLSDLSI 756 Query: 776 IATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE 835 IATPP RR VKT V +D VR+A+ E RGGQ + + +E+++ A +L ELVPE Sbjct: 757 IATPPNRRSPVKTRVGPFDDAAVRDALTAERARGGQSFVVCPRIEDLEPMAAKLQELVPE 816 Query: 836 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 895 HG+M+ E+E M F H +VL+ T I+E+G+D+ ANT+++ AD FGLA+ Sbjct: 817 QTTVTLHGKMKPDEVEDAMLAFAHGEHDVLLATAIVESGLDVANANTMVVCHADRFGLAE 876 Query: 896 LHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGA 955 LHQLRGRVGR + + L T + + A+ RLEA+ LGAGF +A DL++RG Sbjct: 877 LHQLRGRVGRGARRGHVLLTTEADRELGEHARSRLEALEEFSTLGAGFDIAARDLDLRGT 936 Query: 956 GELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDD 1015 GELLG+EQ+G ++TIG LY ++LE AV + EP + + L +P+ +P D Sbjct: 937 GELLGDEQAGHVQTIGIGLYRKILERAVALAQGQPEPD-----DVRPVIALGLPATIPAD 991 Query: 1016 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 ++P+ + R+ + L+ ++VE+ DRFG +P T +A LR + + G+ Sbjct: 992 YVPEPDMRIELALLLERVSDAATLDALRVEIEDRFGPMPATLLTHFRLAELRLRCRAAGV 1051 Query: 1076 RKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGP----TRLKFIQDLSERKTR 1131 KL+ K + F LQ RLD RL F + Sbjct: 1052 AKLDHGPKATALGFTPAMS-------AALQDAGIEDRLDDAKWSKNRLIFPAPEDDEADP 1104 Query: 1132 IEWVRQFMRELE 1143 + + + L Sbjct: 1105 LAHANELLDRLA 1116 >UniRef50_C5F1R4 Transcription-repair coupling factor n=2 Tax=Helicobacter RepID=C5F1R4_9HELI Length = 1008 Score = 790 bits (2040), Expect = 0.0, Method: Composition-based stats. Identities = 308/1059 (29%), Positives = 533/1059 (50%), Gaps = 99/1059 (9%) Query: 31 VAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISS 90 + + E++ ++ + D +A +L +++ F L D + + +Q+ + Sbjct: 14 LRDFQEKYQNGLICLTKDKNDAQKLA-DVASFLGIQSFVLEDLRAVFGEDLRSYQEELRE 72 Query: 91 RLSTLYQL-PTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAG 149 L+TL T +L P+ TL+ + L G ++ G+ L + L G Sbjct: 73 ILNTLKNFYTTNSPKILFSPLQTLLNPMPKLEALEGFSIAF--GESLELREFQETLLHFG 130 Query: 150 YRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTL-EEVEA 208 Y V+ V GE + RG ++DLF E P RL F +EI+S+R FDV +Q EE+E Sbjct: 131 YEFVELVEMSGEVSIRGDIIDLFLPNYENPIRLSLFCNEIESIRFFDVQTQLCFQEEIEK 190 Query: 209 INLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEP 268 + +LPA F + E S+ ++ + E+ G+ + + + Sbjct: 191 LEILPAF-FNLSAKSYEELLSKIQE-----ANIENSLHYQGNLIAAYGLWFLEE---KQN 241 Query: 269 LPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELF 328 L ++ Y A + + + L+ E EL Sbjct: 242 LLEIYPYLKAPNI-----------QDLLDELLSFQEQN------------------KELL 272 Query: 329 SELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFS 388 ++ +++ + + A N+ +F + ++ Sbjct: 273 KQILEHKSIEVSQNYEDFECAFRNIP------------------TFLEFHKNKKITIIAK 314 Query: 389 VESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESD 448 ES R+ + + Y ++ ++G ++ ++ Sbjct: 315 TESLIRQAGIS------------------LGEHKEYQLVLGKDYGIWILGKDELILS--- 353 Query: 449 LLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY 508 L + ++++ + + + + EL +G VVH+++GV + G+ G T ++ Sbjct: 354 -LNTKTKQKKKFANKIL--------IDELKVGDYVVHIDYGVALFNGIVQANIFGATRDF 404 Query: 509 LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAEL 568 + L Y + KL +PV +L I RY L KLG +++R ++K EK+ +A + Sbjct: 405 IELKYLGEDKLLLPVENLDRIDRYI-ADGGIPILDKLGKGSFARLKEKVKEKLFVIANGI 463 Query: 569 LDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCG 628 + + A+R +G ++E+ +F + F T DQ++AI + D+ MDRL+ G Sbjct: 464 IALAAKRELIDGIVLDTNKEEILIFQNQSGFIYTKDQSKAIEEIFKDLSSGRVMDRLLSG 523 Query: 629 DVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRS 688 DVGFGKTEVAM A F++ + Q A++ PTTLLA QHY + RF ++ ++I + R+ Sbjct: 524 DVGFGKTEVAMNAMFVSYLSGYQSAIITPTTLLAYQHYLTIKSRFESFGIKIARLDRYIG 583 Query: 689 AKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRAN 748 KE+ IL + +G I ++GTH LL +V FK+L L+++DEEH+FGV+ KERIK + N Sbjct: 584 TKEKKAILEGLKDGTIHAVVGTHALL--NVSFKNLALIVIDEEHKFGVKQKERIKEIAQN 641 Query: 749 VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILR 808 +L+++ATPIPRTLNMA+S ++ LS + P++RL +TFV+EY +++E ILRE+ R Sbjct: 642 THLLSMSATPIPRTLNMALSHIKGLSELKEAPSQRLPTRTFVKEYSDSLLKEVILRELRR 701 Query: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868 GGQV+Y++N++ I + E + ++P +IAI H Q++ +E E ++ +F FN+L+CT Sbjct: 702 GGQVFYIHNNISTINQKKEEILTILPHLKIAILHSQIQAQESENIIMEFAKGNFNLLLCT 761 Query: 869 TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQK 928 +I+E+GI +P ANTI++ R+D FG+A LHQLRGRVGR + + + L ++T +AQK Sbjct: 762 SIVESGIHLPNANTILVGRSDCFGIADLHQLRGRVGRGSKEGFCYFLIEDSSSITQEAQK 821 Query: 929 RLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKA 988 RL A+ LG+G ALA HDLEIRG G LLGE QSG ++ IG+SLY+ +LE A+ L Sbjct: 822 RLLALEKNAYLGSGGALAYHDLEIRGGGNLLGEAQSGHIKNIGYSLYLRMLEEAIYQLSG 881 Query: 989 GREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELID 1048 + +V+L + + L + I RL Y+R++ + E+ + I+ E+ + Sbjct: 882 NIKE-----EKANIDVKLSVTAFLNPELIASEKLRLEIYRRLSRCEEESAVYGIESEIEE 936 Query: 1049 RFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVI 1087 RFG L + + + ++ +A+K GI + ++ Sbjct: 937 RFGALDIYTKQFIALIVIKIKARKQGIINILNYQQNITF 975 >UniRef50_Q83N19 Transcription-repair coupling factor n=4 Tax=Bacteria RepID=Q83N19_TROWT Length = 1291 Score = 784 bits (2024), Expect = 0.0, Method: Composition-based stats. Identities = 280/669 (41%), Positives = 411/669 (61%), Gaps = 25/669 (3%) Query: 423 RYLMIGAAEHGFVDTVRNLALICESDLLGERVARR-RQDSRRTINPDTLIRNLAELHIGQ 481 ++ + GF ++ LI E +L G+ ++ + SRR I+P L I Sbjct: 567 VVVIDSYIQEGFSVPTKSFTLIGEHELFGKTTLQKAPRISRRAIDP-------INLAIDD 619 Query: 482 PVVHLEHGVGRYAGMTTL--EAGGITGEYLMLTYAND-----AKLYVPVSSLHLISRYAG 534 VVH HG+ R+ GM + + EYL+L YA + KLY+P L +IS+Y G Sbjct: 620 YVVHEIHGIARFKGMCSRRPKHDAPEQEYLILEYAKNRLGVADKLYIPTDQLSMISKYIG 679 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 L ++GG W+ + +A + + +A +L+ +Y++R+ +G+AF D F Sbjct: 680 SD--RPTLSRIGGSDWALTKSRARKAISSIALDLVKLYSRRSITKGYAFSPDTPFQTHFE 737 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 + F + T DQ + I AV +DM MDR++ GDVGFGKTE+AMRAAF AV ++KQVAV Sbjct: 738 NEFLYTETRDQEKTIVAVKADMENSKPMDRIISGDVGFGKTEIAMRAAFKAVQDNKQVAV 797 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 LVPTTLLA+QH F +RF WPV I +SRF+S E + + ++ G IDI+IGTH LL Sbjct: 798 LVPTTLLARQHIQTFCERFDKWPVTIASLSRFQSKSEIQKTICGISSGGIDIVIGTHMLL 857 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 ++FKDLGLLI+DEEHRFGV HKE IK ++ +DIL ++ATPIPRTL M++ G++++S Sbjct: 858 NKKIQFKDLGLLIIDEEHRFGVNHKEAIKKLKIGIDILAMSATPIPRTLEMSLMGIKEIS 917 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 ++TPP R+ + T V Y V A+ REI+RGGQV+Y++ND I + A+RL +L+P Sbjct: 918 TLSTPPENRMPILTHVGPYRDKQVIAAVRREIIRGGQVFYIHNDTATISRVAQRLEQLIP 977 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 EAR+ H ++ ER LE+ + DF ++++LVCTTIIETG+D ANTIII+ A+++GL+ Sbjct: 978 EARVVSAHAKLAERMLEKTVIDFWEGKYDILVCTTIIETGLDNANANTIIIDSAENYGLS 1037 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QLHQLRGRVGR +AYA+L + A KRLEAIA LGAG +A DLE+RG Sbjct: 1038 QLHQLRGRVGRGTKRAYAYLFY--TSTLKDTAYKRLEAIARNNHLGAGAQIAMKDLELRG 1095 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPD 1014 AG LLG QSG + ++GF LY+ ++ +A+ K E + +E+ + + +P Sbjct: 1096 AGSLLGHAQSGHIASVGFDLYIRMVTDAISNFKG------EQSRTNNLRLEIPVDASIPK 1149 Query: 1015 DFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 ++ R+ YK+I+ A ++ ++++I E++DRFG LP LL++ARLR A G Sbjct: 1150 AYVDSERLRIELYKKISEALSDADIKDIGDEILDRFGNLPSQVINLLELARLRILASSRG 1209 Query: 1075 IRKLEGNEK 1083 I + Sbjct: 1210 IDLITLKSD 1218 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 40/228 (17%) Query: 9 LPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMV- 67 +P G + A+LV ++ +++I P D + + + + Sbjct: 54 IPTGFAATACPGGFSACKVASLVGDV-----DSLLVILPSEDAC--FTDTLRTYLPESII 106 Query: 68 MNLADWETLPYDSFSPHQDIISSRLSTLYQLP---------------------------- 99 +N +W+TL ++ SP + +S+R+ L+++ Sbjct: 107 LNFPEWDTLLHEQISPSPERVSARMEALHKISLFRKNNKRAKNAQTSKTLHDIGILEDNL 166 Query: 100 --TMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVM 157 Q+ V++ + MQ + S + L G + L + Y D V Sbjct: 167 PTIHQKLVVVASIKAFMQPII--SDGNPPCLYFHTGGEYELSEIANILVAMSYSRTDLVG 224 Query: 158 EHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEE 205 GE+A RG +LD++P + P R++FF +++S+R F V QR++ Sbjct: 225 ARGEFAIRGGILDIYPPTEKHPIRIEFFGRQLESMRHFRVSDQRSIGP 272 >UniRef50_Q8D3A2 Mfd protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3A2_WIGBR Length = 685 Score = 780 bits (2014), Expect = 0.0, Method: Composition-based stats. Identities = 321/675 (47%), Positives = 477/675 (70%), Gaps = 3/675 (0%) Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 + E G ++H++HG+G+Y G +E GI EY+++ YA + LY+P +SLHLIS Sbjct: 12 FSSDIEFISGDFIIHIDHGIGKYIGTKFIETSGIKNEYMVIQYAENDILYLPFTSLHLIS 71 Query: 531 RYAGG--AEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDRE 588 +Y L KLG D W + +K +K+ D+A E+LD ++R +K+GF+F+ Sbjct: 72 KYKKNNYDSNLIILDKLGSDTWKKYSKKIIKKINDIAVEILDNASERLSKKGFSFELKFN 131 Query: 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 +Y+LFC+ F+ T DQ +AI V+ DM + M+RL+CGDVGFGKTE+AMRAAF+A+ N Sbjct: 132 KYKLFCNECNFDLTQDQNKAILEVIDDMKKSSVMNRLICGDVGFGKTEIAMRAAFIAIQN 191 Query: 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 708 KQV++L PTTLL+QQH+DNF+ RF WP++I ++SRF + KEQ +++ + G+IDILI Sbjct: 192 KKQVSLLTPTTLLSQQHFDNFKLRFKKWPIKISILSRFLNKKEQNKVIKMILIGEIDILI 251 Query: 709 GTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMS 768 GTH++LQ D+ +KDLGLLI+DEEHRFGV KE IK +R VD+L+LTATPIPRTLNMAM+ Sbjct: 252 GTHRILQKDIIWKDLGLLIIDEEHRFGVSQKECIKTVRTGVDVLSLTATPIPRTLNMAMN 311 Query: 769 GMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAER 828 G+RDLSII+TPP RL VKTF+ EY+ ++++AI E+ R GQ+YYL+N++ I + ++ Sbjct: 312 GLRDLSIISTPPKYRLPVKTFIYEYNKDIIKKAIKNELSRKGQIYYLHNNISTINETSKI 371 Query: 829 LAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 L ++ P+ RI I H +M + L++ M DF +F++LVCT+IIETGIDI ANTIIIE+A Sbjct: 372 LKKIAPKVRIKISHSKMCKNLLKKTMQDFKENKFDMLVCTSIIETGIDIANANTIIIEKA 431 Query: 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATH 948 + FGLAQL+QLRGRVGRS QAYA+L T ++ +++KRLEAI+S+ LG+GF+L+ + Sbjct: 432 NQFGLAQLNQLRGRVGRSFRQAYAYLFTSKSNSLNENSKKRLEAISSINKLGSGFSLSIN 491 Query: 949 DLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRM 1008 DLEIRG+GELLG +QSG + +IG SLY +LL+ ++ +K+G+E SLE + TEV L + Sbjct: 492 DLEIRGSGELLGSKQSGKINSIGISLYNKLLKKSIKLIKSGKELSLETIKENFTEVNLNI 551 Query: 1009 PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQ 1068 P+ +PD +IPDV+ RL +YK+ S +T++E+ +K + +FG LP L++IA +RQ Sbjct: 552 PAFIPDSYIPDVSIRLFYYKKFFS-ETKSEINNLKNIITSKFGKLPKSVCYLIEIAYIRQ 610 Query: 1069 QAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSER 1128 +A +GI+ + N KGG +EF + N +N I LL+ P+ Y++ T+L+ Sbjct: 611 KANFIGIKIININFKGGFVEFNKNNSINYESFIRLLKNYPKIYKIISQTKLRIKYLTKSH 670 Query: 1129 KTRIEWVRQFMRELE 1143 + +I++++ F+ ++ Sbjct: 671 EEKIDYIKNFLNYIK 685 >UniRef50_D1Y8J9 Transcription-repair-coupling factor n=2 Tax=Synergistaceae RepID=D1Y8J9_9BACT Length = 990 Score = 778 bits (2010), Expect = 0.0, Method: Composition-based stats. Identities = 351/1072 (32%), Positives = 529/1072 (49%), Gaps = 117/1072 (10%) Query: 37 RHAGPVVLIAPDMQNALRLHDEISQF--TDQMVMNLADWETLPYDSFSPHQDIISSRLST 94 R ++++ P Q AL L ++ + ++ ++ D R T Sbjct: 2 RGCEKILVLVPTRQEALALDSDLKVLEVGESRLLEEPPLDS----EKLRSGDSFLRRGHT 57 Query: 95 LYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVD 154 L + G+L+ L L + G+RL RD L + L GYR + Sbjct: 58 LSGWLNAKSGMLVATPGAL----VTPFRFGKTGLTLAAGKRLGRDTLTSWLAENGYRRAE 113 Query: 155 QVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPA 214 V + GE+A RGAL+D F + P R++FFD+++ Sbjct: 114 LVWQPGEFAVRGALVDFFDPSEKAPLRVEFFDEDV------------------------- 148 Query: 215 HEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFS 274 +I F+ + + +F + P I + V+ W Sbjct: 149 -------ESIRFFQPRSQRSF--QNLPHFIVRSVNHSEDEQRERSWGNY----------- 188 Query: 275 YFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW 334 TLLV LE S F A E + L P + Sbjct: 189 ----GTLLVQPRRLEDSFAAFCELYNALVEEKQR------LAPD--------------AF 224 Query: 335 PRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGR 394 R L T LP + + AP + + + F F + Sbjct: 225 ERFLLDTGRLP------------------RLRVSAPGEGVHQDTLDFGAVPYFRGDLRAA 266 Query: 395 REALGELLA-RIKIAPQRIMRLDEASDRGRYLMIGA-AEHGFVDTVRNLALICESDLLGE 452 R + L KI + G+ G V RN I +++L G Sbjct: 267 RAYVDSHLRAGFKIHIASRNLTGSSFPEQVSFQRGSSLSGGVVVKDRNEIWISDAELFGI 326 Query: 453 RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLT 512 + + IN + A L Q V+H ++GV + G + GG E ++L Sbjct: 327 -----NEVAEEEINRGMPLDLEASLKKDQWVIHEKYGVCQLEGTSVENFGGQDYETIVLR 381 Query: 513 YANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIY 572 +A++ +L +P + L ++ + G L L W A +KA ++ A LL++Y Sbjct: 382 FADNERLIIPTAELFRLTPWNGNG--VPELDSLKSKRWRSAWKKAEAQIEAEAQGLLNLY 439 Query: 573 AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632 AQR +G AF D + + F +SFP++ T DQ +AI V DM + MDRL+ GDVG+ Sbjct: 440 AQRELADGRAFGRDGDLLKRFEESFPYKETVDQLRAIRDVKHDMERRWPMDRLIVGDVGY 499 Query: 633 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ 692 GKTEV +RAA V+N Q A++ PTT+LA QHY R P+R+E++SR K+Q Sbjct: 500 GKTEVVLRAAVKTVENGAQAAIIAPTTVLALQHYRTCVARVGELPIRVELLSRMIPKKKQ 559 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 +IL E A G++DILIGTH+L Q D++FKDLGLLI+DEEHRFGV+HKER+K +D+L Sbjct: 560 KEILDETANGRVDILIGTHRLFQDDIRFKDLGLLIIDEEHRFGVKHKERLKVAHPGLDVL 619 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 +L+ATPIPR+L+MAM G+RD+S+IAT P R V T +D + +A+LRE++RGGQV Sbjct: 620 SLSATPIPRSLSMAMRGIRDISVIATSPRGRGEVFTVTSRWDPSLAHDAVLRELMRGGQV 679 Query: 813 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 YYL+N +++I++ A RLA P R A+ HGQM ERELE+ MN+F+ + +LVCTTIIE Sbjct: 680 YYLHNRIDDIEQIAARLANRFPGHRTAVAHGQMGERELEKTMNEFYDGKIEILVCTTIIE 739 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 +G+D+P ANT+I++ GLAQ+HQ+RGR+GR AYA ++ ++RLEA Sbjct: 740 SGLDVPRANTLIVDDVRRLGLAQMHQIRGRIGRRSENAYALFFYESEES-GGQTRERLEA 798 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP 992 + ++ G+ LA DLEIRGAGE+LG EQ G E IG++LY++ L+ VD L+ Sbjct: 799 LGAVGSQNGGYQLAQRDLEIRGAGEILGTEQHGFKERIGYTLYLKKLKERVDQLRG---- 854 Query: 993 SLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGL 1052 + + V+L MP ++P D++P + R+ Y+R+ S + E EE++ EL+DR+G Sbjct: 855 ----IEIKPALVDLAMPLVIPVDYVPQTDLRIGLYRRLLSPLSAQEYEEMQAELLDRYGP 910 Query: 1053 LPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE--FAEKNHVNPAWLIG 1102 LP+ + LLD A +R + LGI +L +E +E E P W++ Sbjct: 911 LPEQVQGLLDAALVRGEGGALGIERLRVSEAFVALEGPLGEDIFSPPRWIVK 962 >UniRef50_UPI0001745840 transcription-repair coupling factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745840 Length = 1117 Score = 777 bits (2007), Expect = 0.0, Method: Composition-based stats. Identities = 317/813 (38%), Positives = 441/813 (54%), Gaps = 52/813 (6%) Query: 336 RVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRR 395 R L E T LG D VQ ++ + VV + G R Sbjct: 303 RADLAEEDFSTAIFENPLGVFHAGDFVVQEARREQFTRQVEDWRKQKWRVVMFFHNPGER 362 Query: 396 EALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVA 455 E EL+ + L +G GFV LA++ +++ G Sbjct: 363 ERFEELVGG-----------EWLQKHDLELALGLLHRGFVIPAAKLAVLTGAEVFGRYQN 411 Query: 456 RRRQDSRRTINPD---TLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLT 512 RR + +L EL G VVHL++G+G+Y G+ E G E +++ Sbjct: 412 TRRFRGSKLDEAQVLRQARDHLRELREGDLVVHLDYGIGKYGGIEVRE-GARREEVMVIR 470 Query: 513 YANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIY 572 YA DAK++VPVS HL+SRY G L+KLG W + R +A + V + AA +L I Sbjct: 471 YAEDAKVFVPVSQAHLVSRYVGVGSRAPTLNKLGDARWVKTRAQAEKSVEEFAAGMLSIA 530 Query: 573 AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632 AQR +G A D + F SF + TPDQ ++I + DM Q MDRL+CGDVGF Sbjct: 531 AQRQTLKGHAHPPDTKWQVEFEQSFLYRETPDQLKSIAEIKRDMEQEKPMDRLLCGDVGF 590 Query: 633 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ 692 GKTEVA+RAAF AV KQVAVLVPTT+LAQQH F++R +++PV +EM+SR AK + Sbjct: 591 GKTEVAIRAAFKAVMGGKQVAVLVPTTVLAQQHLATFKERMSDYPVTVEMLSRLTPAKRE 650 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 +IL V +G +DI++GTH+++ DV+FK LGL ++DEE RFGV+HKER K + VD+L Sbjct: 651 KEILKGVKDGTVDIVVGTHRVISKDVQFKQLGLAVIDEEQRFGVKHKERFKQLFRLVDVL 710 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 TL+ATPIPRTL + + GMRD+S + TPP R AV+T V YD ++R+AI +EI RGGQV Sbjct: 711 TLSATPIPRTLYLGLVGMRDMSTLDTPPPNRHAVQTSVCGYDERIIRDAINKEIERGGQV 770 Query: 813 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 ++L+N V +++K +L L P+AR+ IGHGQM E LE VM F +VL+CTTIIE Sbjct: 771 FFLHNRVMDMEKMKAKLEALSPKARVVIGHGQMDETLLEDVMRRFIAGEADVLLCTTIIE 830 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 +G+DIP ANTIII+RAD FGLA L+QLRGRVGR +A+A+L+ P DA+KR+ A Sbjct: 831 SGVDIPNANTIIIDRADRFGLADLYQLRGRVGRGGERAHAYLMLPRDLMTVGDARKRVTA 890 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP 992 I LG+GF +A DLEIRGAG LLG EQSG + IGF LY ++L++A L+ R P Sbjct: 891 IKQYTALGSGFKIAMRDLEIRGAGNLLGTEQSGHIFAIGFDLYCQMLKSATARLQGRRTP 950 Query: 993 SLEDLT-------------------------------------SQQTEVELRMPSLLPDD 1015 +++ T E R+P +P Sbjct: 951 PPMEVSLRVDFLCMSEAQWLQEADGTPQKRVTAATAHRPPDRQKLVTANEWRIPCFIPQS 1010 Query: 1016 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 +I D +R++ Y+ + T EL+ ++ D++G P LL A ++ A I Sbjct: 1011 YIEDARSRITAYRLLGEVLTRKELDTLERNWRDQYGPPPPAVENLLVCAGIKLAAAHASI 1070 Query: 1076 RKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQP 1108 +E E ++ + + L P Sbjct: 1071 SAVEVKEGKLMLTRNGQYVLLSGKFPRLTANDP 1103 Score = 142 bits (359), Expect = 6e-32, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 28/210 (13%) Query: 30 LVAEIAER--HAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDI 87 +A + + ++ PD + ++ E+ + + + + P D Sbjct: 52 FATALAAQALPKRRLWVVCPDARVQEQVQGELRVW-GLPALFFPRLSQMGDAAGLPDPDA 110 Query: 88 ISSRLSTLYQLPT-------------------------MQRGVLIVPVNTLMQRVCPHSF 122 ++ R++ L + Q VL++ ++L + V Sbjct: 111 LAERITALTRFSESMAGKGHGKGKARPGDSGEATGGDEGQPRVLVICADSLDEEVPALHE 170 Query: 123 LHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRL 182 L + ++ G +L +AL L SAGY V V E G+ A RG ++D+F +E P R+ Sbjct: 171 LEAGKMSLQTGMKLDVEALLQDLGSAGYERVPVVTERGQVARRGGIVDVFSWQAEEPLRM 230 Query: 183 DFFDDEIDSLRVFDVDSQRTLEEVEAINLL 212 +FFDDE++SLR FD+ +Q +++ + + LL Sbjct: 231 EFFDDELESLRSFDIHTQTSVQRFQRMQLL 260 >UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX01_9BACT Length = 1082 Score = 772 bits (1994), Expect = 0.0, Method: Composition-based stats. Identities = 311/774 (40%), Positives = 458/774 (59%), Gaps = 54/774 (6%) Query: 355 FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMR 414 F+ + + +++ LR++ VF +EG E L +LL ++ Sbjct: 289 FEAGDFVVDEIKRERFFSQLREWRTEGWRVHVF-CNNEGEIERLHDLLPPVEADA----- 342 Query: 415 LDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIR-- 472 +G GF +A++ +++L G R + + R Sbjct: 343 --------LQFTVGTLNCGFTFPSAKVAVLSDAELFGRYRNTRARRMALRRAREQASRSQ 394 Query: 473 -NLAELHIGQPVVHLEHGVGRYAGMTTLE-AGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 + +EL+ VVHLEHG+GRY GM ++ A G T E L+L +A+DA+LYVP+ +L+S Sbjct: 395 IDFSELNEDDYVVHLEHGIGRYEGMKSIPRADGKTEEVLVLAFADDARLYVPLEQSYLVS 454 Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 RY G ++N L LG W++A++ A + V D A++LL ++A+R G+AF D + Sbjct: 455 RYVGVGKKNPALSVLGDGKWAKAKKNAEKAVFDYASKLLAVHAERETAVGYAFPPDNKWQ 514 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 + F SF F+ T DQ AI A +DM MDRL+CGDVGFGKTEVA+RAAF +V K Sbjct: 515 REFESSFLFKETVDQLTAIAASKADMESERPMDRLICGDVGFGKTEVAIRAAFKSVMGGK 574 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 QVA+LVPTT+LA+QHY NFR+R +++PV +E++SRFR+A EQ + + +A+G++DI++GT Sbjct: 575 QVAILVPTTVLAEQHYRNFRERMSDYPVTVELLSRFRTAAEQRKTVQGLADGRVDIVVGT 634 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H+L+ D+ FKDLGL+++DEE RFGV HKER K M VD+LTL+ATPIPRTL +++ G Sbjct: 635 HRLISKDILFKDLGLVVIDEEQRFGVLHKERFKEMFKLVDMLTLSATPIPRTLYLSLMGA 694 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 +D+S I TPP R+ +T + YD ++R+AI RE+ R GQVY+L+N V +I+ +++ Sbjct: 695 KDMSTIETPPLNRIPTETLICPYDERIIRDAINRELSRQGQVYFLHNRVHSIEMMRDKIK 754 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 +L P+AR IGHGQM E ELE VM++F +VL+ TTIIE+G+DIP ANTIII+RAD Sbjct: 755 KLCPKARCVIGHGQMDEHELEDVMHEFVSGAADVLISTTIIESGLDIPNANTIIIDRADR 814 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 FGLA L+QLRGRVGR+ H+AYA+LL P +A++R+ AI LGAGF +A DL Sbjct: 815 FGLADLYQLRGRVGRAQHKAYAYLLLPREMMTQGEARRRINAIKQYSSLGAGFKIAMRDL 874 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAG--------------------- 989 EIRGAG +LG QSG + IGF LY LL+ A+ LK Sbjct: 875 EIRGAGNILGTAQSGHIVNIGFDLYCALLKQAIAKLKGEKVRARLEVVLRTDFVATREAE 934 Query: 990 ---REPSLEDLTSQ------------QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK 1034 R +ED S+ +T + P+ LP +I + R+ Y+++A Sbjct: 935 FLNRSSKIEDGRSEMAGRGSAANSELRTPISDFAPAFLPSVYIGESQPRIQAYRKLAEVT 994 Query: 1035 TENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088 T+ +L+ I+ DR+G+LP+ A LL + ++ A +E + ++ Sbjct: 995 TQEQLDTIRKTWRDRYGVLPEAAENLLVMTEIKLAATARKFTMVEARDGKLILT 1048 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 80/298 (26%), Positives = 138/298 (46%), Gaps = 16/298 (5%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL 70 V+ GE + AA L A + ++ V ++ P+++ +H+E+ Q+ + Sbjct: 24 VRKGEAVSFEHVVAAAQPFLAALLVQQAKARVWIVCPNVRTQETMHNELLQWFPDA-LFF 82 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQLPT-MQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 + + P + P + I+ RL + +L + R V+++ +L V + L + Sbjct: 83 PEIDRAPVEGALPDPESIAERLGIVQRLTSVKGRQVVVLTRASLDDEVPSPAALKQLEIR 142 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 +++ RL R+ L QL AGY HV QV G++A RG +LD+F LP R++ FDDEI Sbjct: 143 LRRSTRLDREKLLKQLAEAGYEHVPQVSARGQFAVRGGILDVFSFHHSLPVRIELFDDEI 202 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQV- 248 DSLR FD+D+Q +++ ++ + LL E ++A+ +L + + QV Sbjct: 203 DSLREFDLDTQISVQHLDTVTLL-LGEAAAERASCKLQELVTERDITIDAEASWFAAQVR 261 Query: 249 ----SKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLAR 302 S+G G E + FF L F A +V+ E ERF + Sbjct: 262 IMEHSEGAATEGAEDYSTAFFDHGLGE----FEAGDFVVD----EIKRERFFSQLREW 311 >UniRef50_C1TQS1 Transcription-repair coupling factor Mfd n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQS1_9BACT Length = 1014 Score = 769 bits (1986), Expect = 0.0, Method: Composition-based stats. Identities = 343/1090 (31%), Positives = 521/1090 (47%), Gaps = 120/1090 (11%) Query: 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMNLAD 72 G + GA A + + + ++ PD A + + + + L D Sbjct: 7 GSRAFFFPFKGAVRAWI----CRERSSRLTVLLPDENQAEDFYSDAKILLSHEKIFRLPD 62 Query: 73 WETLPYD-SFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 +P + + +R L + + + G+LI +M L L ++ Sbjct: 63 ---IPLEKGIVDDPASMVARGHVLRKW-SEEGGILISTPGGMMSPFMNSEGL----LSLR 114 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 G+ RD L + LDS+GY D V + G E R +D Sbjct: 115 IGECAGRDRLISWLDSSGYSRSDLVWKPG----------------EYAVR----GGIVD- 153 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRD-TFEVKRDPEHIYQQVSK 250 +FD S+ +P D E+ D T + K + +++ + Sbjct: 154 --LFDPSSR-----------MPLRVVFFDDEIEEMRLFSPEDQTSKCKVEAFSVWELGDR 200 Query: 251 GTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDP 310 + L + + +A+ F++ + Sbjct: 201 -------------VTPSAASTVSE--KGEVFLFDPIRSQINADSFRSIWNDLSAKWNIPE 245 Query: 311 MRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAP 370 R L + P + L + L +++P + + A Sbjct: 246 ER--------------WDRFLIDTPLLYRFESGLGVRQRR--LSLREVPRFRGRISEMAV 289 Query: 371 LDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAA 430 + ++ E + S P +D + Sbjct: 290 --QISRWREQGYYVAIRSSSPL----------------PSDFEGMDWQPE--------PL 323 Query: 431 EHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 GF+D + + + ++ G R RR + + L +VH +HG+ Sbjct: 324 SSGFIDDEEKMVFLSDVEMYGIRPDRRTERQGTPKDWSILFEAR------DWLVHEDHGL 377 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW 550 RY G+ ++E E+L+L + + +L +P + IS Y G +E+ +LG W Sbjct: 378 CRYGGLESVEGSWGRQEFLVLEFQDKKRLLLPTGQISRISPYKGSVDESTVPDRLGSSRW 437 Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 S + +KA ++ + A ELL++YA+R +G AF D E + F SFP E T DQ +AI+ Sbjct: 438 STSLRKAERQIEEEAKELLELYAKRKIAKGHAFSPDGEAMEEFERSFPHEETIDQLKAIS 497 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 V DM P MDRLV GDVG+GKTEVA+RA F A + QV VLVPTT+LAQQHY FR Sbjct: 498 DVKKDMESPRPMDRLVVGDVGYGKTEVALRAVFKAAMDGFQVLVLVPTTVLAQQHYMTFR 557 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 R +P+++E++SRF S + Q +IL +A+G +D++IGTH+LLQ+D+K + LGL+IVDE Sbjct: 558 SRMGPFPLKVELLSRFVSQRRQNEILTGLADGSVDVVIGTHRLLQNDLKIRRLGLIIVDE 617 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 EHRFGV HKER + +R+ VD+LTL+ATPIPRT +MAM GMRD+SII TPP R A+ T Sbjct: 618 EHRFGVAHKERFRKLRSGVDVLTLSATPIPRTFSMAMKGMRDVSIIETPPGNRPAIITVT 677 Query: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 +D +VR+A+ RE+ RGGQVY L+N V I++ A + P+ R+A HG+MRE EL Sbjct: 678 GAWDDGLVRKALAREMARGGQVYMLHNRVGTIEERAGWVKSRFPDVRVAFAHGRMRENEL 737 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 E M F+ ++LVCTTI+E+G+D+ ANT++++ + GLAQ+HQLRGRVGR A Sbjct: 738 EETMMAFYDGEIDILVCTTIVESGLDVGRANTLVVDDSRLLGLAQMHQLRGRVGRRDDTA 797 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 YA+ L P + +RL+AI L GAG+ LA DL IRG G+LLG Q G E + Sbjct: 798 YAFFLYPSDCVLPHSTAERLDAIGRLSFQGAGYELAKEDLHIRGGGDLLGMSQHGHRERV 857 Query: 971 GFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI 1030 G LY L + VD L+ G T+ +TE+E+R+P +P+ +I RL+ Y+RI Sbjct: 858 GLQLYYRKLRDEVDRLRGG--------TTGETEMEIRIPLSIPESYISVSALRLAIYRRI 909 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFA 1090 + E ++ EL DRFG +P LLD+A LR +K GI + +E+ I Sbjct: 910 DEIEDLEGRENLRNELQDRFGPIPSEVDRLLDLALLRTICRKRGIIRCMLSEERCEITLG 969 Query: 1091 EKNHVNPAWL 1100 EK V + L Sbjct: 970 EKTDVRLSAL 979 >UniRef50_Q89L81 Bll4667 protein n=2 Tax=Bradyrhizobium RepID=Q89L81_BRAJA Length = 1093 Score = 767 bits (1980), Expect = 0.0, Method: Composition-based stats. Identities = 321/1125 (28%), Positives = 504/1125 (44%), Gaps = 97/1125 (8%) Query: 24 GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLPYDSFS 82 G+ L+A+ + +V +A A RL I V+ TLP+D Sbjct: 58 GSMALHLLAQWKQSGRSGIVFLAESENRAERLGSVIHALDPACEVLVFPRLNTLPFDQLE 117 Query: 83 PHQDIISSRLSTLYQLPTMQRGV-LIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDAL 141 P ++ R S L +L ++ + L+ +M+R+ P + L ++ +K G S L Sbjct: 118 PSHELAGRRASVLRRLAKSRKPLFLVSTAEAVMERLPPPASLSRLSVSLKVGGAFSERDL 177 Query: 142 RTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR 201 R +L+ GY D+ G G ++FP G+ P+R++ I + FD Sbjct: 178 RGRLEELGYDLEDEPDYPGGALFHGQTFEIFPAGALGPFRIEHSGRAISRIVAFDPKEHD 237 Query: 202 TLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQ 261 + E + + P E R F KR Sbjct: 238 IIFETSELLVDPMSE---------------RLAFAGKRGKR------------------- 263 Query: 262 PLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLW 321 LF Y + + G ++ P + + Sbjct: 264 --------ATLFDYCGRAKWIADAGVP----------LHVDGWLSTIEEAAPRAEREREY 305 Query: 322 LRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETF 381 + + W ++ + LP A+ FQ +P+ + + L A + Sbjct: 306 IGRRD-------WKQLSRGMKVLPRTAS-----FQPIPEFSKLTSSRKALRAFVEETRRA 353 Query: 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEA--SDRGRYLMIGAAEHGFVDTVR 439 ++ E + + + QR DEA G ++ + GFV + Sbjct: 354 GSRLILVAAQEDDLRVMERM---GGVKAQRCENWDEAVRGRSGEAALLADLDAGFVVPGK 410 Query: 440 N-LALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTT 498 L ++ SD+LG R A Q R + ++ E G VVHL+ G+ G+ T Sbjct: 411 KSLVVVTASDVLGSR-AHHPQPMARAWSAAFDHADVPE--QGTVVVHLQRGLAVLDGLQT 467 Query: 499 LEAGGIT-GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKA 557 + GG E + L +A D + VP L L+ YA + A L K G +W R +A Sbjct: 468 VNTGGGALREMIRLVFAGDNAVLVPPPDLALMWPYATEPGKLA-LDKADGSSWWARRTEA 526 Query: 558 AEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMC 617 +++ L +QR + Y+ F FP+ TT DQA+AI VL D+ Sbjct: 527 EREIQIAGKVLAKHISQRRRRRADKLVPPGSAYEKFVARFPYFTTVDQAKAIRDVLEDLA 586 Query: 618 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 MDR++CGDVGFGKTEVA+RAA V + KQVA+ VPTT+LA+QH F+ RFA + Sbjct: 587 SGHPMDRVICGDVGFGKTEVALRAAAAVVLSGKQVAIAVPTTVLARQHVATFQKRFAPFD 646 Query: 678 VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVR 737 + + +SR S E + G+I +++GT L DVKF DLGL+I+DEE FG Sbjct: 647 IEVGNLSRATSGAELRATREGLRSGRIKVVVGTQALGGKDVKFDDLGLVIIDEEQHFGAA 706 Query: 738 HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV 797 K R+ ++ NV +L ++ATPIPRTL ++G RDLS+IA+PP RL V T + Sbjct: 707 EKARLSSLAKNVHVLMMSATPIPRTLAAGLAGFRDLSVIASPPVHRLPVATRIAPLSDAA 766 Query: 798 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 857 + A+LRE R GQ + + ++++ R+ + + RI HG++ E++ M F Sbjct: 767 IASALLREQRRHGQSFLICPRIQDLDPMLARVQAVAGDLRIVCLHGRLAADEIDDRMMSF 826 Query: 858 HHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP 917 R +VL+ T I+E+G+DIP ANTI++ + FGLAQLHQLRGRVGRS +A+A LLT Sbjct: 827 VEGRADVLLATNIVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRVGRSGIRAFAHLLTE 886 Query: 918 HPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYME 977 + KRL + GAGFA++ DL++RGAG+L E+QSG ++ G LY Sbjct: 887 TNSGQSE---KRLAVLEEFSRPGAGFAISERDLDLRGAGDLFSEQQSGHVQVFGPVLYSH 943 Query: 978 LLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTEN 1037 LL+ A + + R ++ L + +LP+ ++ RL Y R A +E+ Sbjct: 944 LLKMASEKVDEERAAV------WVPDLNLPVADMLPETYVHSEPVRLELYARAARCSSED 997 Query: 1038 ELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNP 1097 +L +++ E RFG LP AR A+LR + ++ GI +L+ F Sbjct: 998 DLVDLEEETSRRFGPLPKVARDFFAAAKLRLECKRRGIIRLDVGLGAVAATF-------- 1049 Query: 1098 AWLIGLLQKQPQHYRLDGPTRLKFIQDLSE-RKTRIEWVRQFMRE 1141 L G L+K R+ + + + R+E + + + E Sbjct: 1050 --LPGRLRKSRGKSLQRDGDRVVYHSQMRDAPFERVEELFEVLDE 1092 >UniRef50_Q5SJW3 Transcription-repair coupling factor n=3 Tax=Thermus RepID=Q5SJW3_THET8 Length = 978 Score = 766 bits (1979), Expect = 0.0, Method: Composition-based stats. Identities = 345/930 (37%), Positives = 477/930 (51%), Gaps = 49/930 (5%) Query: 208 AINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSE 267 + + P E +KA L + F + + +V + E Sbjct: 52 KVYVNPGLEALEEKALFVLSYEEALSPFPEDPEAWRLLLEVGRAYP---REALLSRLLKL 108 Query: 268 PLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDEL 327 Y +L +L F D L R RG + R +L P+ Sbjct: 109 GYARDEDY----RVLGEVVELGEVRLEFFGDELERLVVRGEERRRHVLLPKPGKAEGFTS 164 Query: 328 FSELKNWPRVQLKTEHLPTKA-----------------ANANLGFQKLPDLAVQAQQKAP 370 L V L T L KA L P + KA Sbjct: 165 KKVLHFPGPVYLDTPALAPKALWPLLAGRPWVALGGGVELPPLELGARPLPPYRGSLKAL 224 Query: 371 LDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAA 430 L ++L +F G L L R++ I+ L+ G Sbjct: 225 EKDLARWLAEGKRVHLFV----GHARTLEYLKRRLQAFSPLILDRFPGPKGRLALLPGDF 280 Query: 431 EHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 E G L+ E+ + R R + + + L G ++H EHGV Sbjct: 281 EGGAEWGEW--VLLTEALVFATGGVRAR------VRVGEGLSDPGALSPGDYLIHPEHGV 332 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW 550 G+Y G+ T E G+ +YL+L Y + KLY+PV L L+ R+ G ++ L LG + W Sbjct: 333 GQYLGLETREVLGVKRDYLVLRYKGEGKLYLPVEQLPLLKRHPGTTDDPPELSSLGKNEW 392 Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 RA+++A + V ++A LL + A+R A G AF E L FP+E TPDQ +A+ Sbjct: 393 QRAKERARKDVEELAGRLLVLQAKRKATPGRAFPPLPEWDPLVEKGFPYELTPDQKRALE 452 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 VL D+ P MDRLV GDVGFGKTEVA+RAA V + QVA LVPTTLLA+QH FR Sbjct: 453 EVLRDLESPHPMDRLVSGDVGFGKTEVALRAAHRVVGHGAQVAFLVPTTLLAEQHGKTFR 512 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 +RF PVR+ ++SRF KE+ IL +AEG +DI+IGTH+LLQ DV+F+DLGLLIVDE Sbjct: 513 ERFQGLPVRVAVLSRFTPPKEEEAILKGLAEGTVDIVIGTHRLLQEDVRFRDLGLLIVDE 572 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 EHRFGV KERI+ ++A VD L L+ATPIPRTL A+ G++DLS I TPP R +KTF+ Sbjct: 573 EHRFGVAQKERIRELKAEVDTLYLSATPIPRTLYSALVGLKDLSSIQTPPPGRKPIKTFL 632 Query: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 +D ++VREAIL E+ RGG+V+Y+++ V +I+ L LVPEARI + HGQM E + Sbjct: 633 APFDPLLVREAILFELERGGKVFYVHDRVASIEARRRFLENLVPEARIGVVHGQMPESLI 692 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 E M F ++VL+ TTIIE G+D+P ANTI+IERAD GLA L+QLRGRVGR +A Sbjct: 693 EETMLLFAEGAYDVLLATTIIEAGLDVPEANTILIERADRLGLATLYQLRGRVGRREEEA 752 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 YA+L P +T A+KRL AIA L DLG+G LA D+EIRG G LLG EQ G + + Sbjct: 753 YAYLFHPP--RLTEAAEKRLAAIADLSDLGSGHLLAERDMEIRGVGNLLGPEQHGHIRAL 810 Query: 971 GFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI 1030 +Y ELLE A+ LK + ++L + + LP +++ + R +Y R Sbjct: 811 SLEVYTELLEEAIRKLKGEAKEERRH-----VTLDLALSARLPAEYVGSLEARSRYYSRF 865 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFA 1090 A AK+ EL + EL +R+G LP+ A + +ARLR A++ G+ + + F Sbjct: 866 AEAKSLAELSRLVRELKERYGPLPEEAENFVALARLRLVAERKGVVSITEGLTHLEVVFP 925 Query: 1091 EKN-HVNPAWLIGL-----LQKQPQHYRLD 1114 + L GL L + P +RL+ Sbjct: 926 RYPLDYDARGLKGLPYRVELTQYPPGFRLE 955 Score = 55.7 bits (133), Expect = 9e-06, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 41/162 (25%) Query: 31 VAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISS 90 A + + A P +L+ P+ + LR + ++S F V E L Sbjct: 20 AALLFAQEAPPALLLVPEAR--LRRYRDLSAF-GAKVYVNPGLEAL-------------- 62 Query: 91 RLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGY 150 ++ + ++ + L+++ G+ R+AL ++L GY Sbjct: 63 ----------EEKALFVLSYEEALS--PFPEDPEAWRLLLEVGRAYPREALLSRLLKLGY 110 Query: 151 RHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 + +Y G +++L RL+FF DE++ L Sbjct: 111 ARDE------DYRVLGEVVEL------GEVRLEFFGDELERL 140 >UniRef50_A4YQE5 Putative transcription repair coupling factor n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YQE5_BRASO Length = 1091 Score = 760 bits (1963), Expect = 0.0, Method: Composition-based stats. Identities = 334/1127 (29%), Positives = 518/1127 (45%), Gaps = 98/1127 (8%) Query: 24 GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLPYDSFS 82 G + L+ + VV ++ D A R+ + V+ L ++T+P+D + Sbjct: 35 GLVASHLLRLWQQPSTRGVVFLSSDEARAERIAAVLHAMDPDCGVLVLPRFDTVPFDDAA 94 Query: 83 PHQDIISSRLSTLYQLP-TMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDAL 141 P +++ R L +L + +LI V ++ V P +L +K GQ + + Sbjct: 95 PSRELSGRRAHVLRRLAEHARHPLLISTVEAVLPLVPPQRCWTAASLHLKAGQPIDLEGF 154 Query: 142 RTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR 201 R L GY + + G G +LFP G+ P R++ D I + FD+ Q Sbjct: 155 RNSLAKLGYATDEPPDDPGSVLFHGQTTELFPAGALGPVRINHADGMISDIHFFDLGHQN 214 Query: 202 TLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQ 261 + E + + P E Sbjct: 215 AVVAAETLVIDPMSERSVGG---------------------------------------- 234 Query: 262 PLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLW 321 E L LF+Y + ++V++ + + R A + VD R Sbjct: 235 -----EALVDLFTYLDGSEIIVDSTVPDHAEMRL-----AALDESDVDKER--------- 275 Query: 322 LRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETF 381 F + W LP K + +P A Q +A L + Sbjct: 276 --RKRAFVDRSTWRHALRLATVLPAKG-----HSEPIPVFAQQRSARATLRRFIESARQR 328 Query: 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRN- 440 ++F+ +E + + + + A D ++ + GF R Sbjct: 329 GARILFTAATERDLQGMERVAGEKAERRKNWAAATRARDGAITSLLIDLDRGFTTGTRRP 388 Query: 441 LALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLE 500 L +I +++LG R +R+ I G ++HL+ G+ G+ + Sbjct: 389 LIVITAAEVLGSRARHLLPMARQAAVAGITIP-----VPGSAIIHLQRGLALLDGLELIS 443 Query: 501 AGGIT-GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAE 559 A ++ + + L +AND + VP++ L LI YAG L G +W+ +A + Sbjct: 444 APNVSARDMIRLVFANDEAILVPIADLGLIWPYAG-DPSGVKLDDADGRSWAARCLRAED 502 Query: 560 KVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQP 619 ++ A L D R E +Y+ F FP+ TPDQA AI VL D+ Sbjct: 503 EIDRTAVRLSDQIRARRRAEAPRIVAPAVEYERFVARFPYLVTPDQAAAIEDVLKDLGAG 562 Query: 620 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 MDR+VCGDVGFGKTE+A+RAA V +QVA++VPTT+LA QH F RFA + + Sbjct: 563 HPMDRIVCGDVGFGKTEIALRAAAATVFAGRQVALIVPTTVLAAQHVQTFVKRFAPFGIS 622 Query: 680 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK 739 + +SR + + ++A+G + ++IGT L DV+F DLGL+IVDEE FG K Sbjct: 623 VGHLSRLSTTADARSTRRQLADGTLKLVIGTTALAADDVRFADLGLVIVDEEQHFGAADK 682 Query: 740 ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVR 799 R+ A+RA V LT++ATPIPRT+ AM+G+RDLSIIATPP RR V T V + Sbjct: 683 ARLSALRAGVHALTMSATPIPRTMAGAMAGLRDLSIIATPPVRRRPVLTKVEPLLDATLS 742 Query: 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 A+ RE RGGQ + + ++++ ERL+ LVPE IA+ HG+M RE++ M F Sbjct: 743 MALRREHRRGGQSFVICPRIKDLAPMRERLSHLVPELGIAMIHGRMPAREIDAEMMRFVA 802 Query: 860 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 + ++L+ T I+E G+DIP ANTI+I A+HFGL+QLHQLRGRVGR +AYA+LL P Sbjct: 803 GKADILLATNIVENGLDIPRANTILISGAEHFGLSQLHQLRGRVGRGGIRAYAYLLADTP 862 Query: 920 KAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELL 979 AQKRL A+ L GAGF ++ DL++RGAG+LL E+Q+G ++ G +LY ELL Sbjct: 863 ---GDAAQKRLSALQELHFAGAGFQISARDLDLRGAGDLLSEQQAGHVQVFGPALYQELL 919 Query: 980 ENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENEL 1039 A+ GR + + ++ P+ LP D++ D TRL Y R+A A+T ++ Sbjct: 920 SRALQ----GRPHRAAEFWLPELRID--RPAFLPSDYVQDQVTRLDVYARLAHAETVADI 973 Query: 1040 EEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAW 1099 ++I+ ++ RFG P A L+ AR+R LGI +L+ +G Sbjct: 974 DDIEDDMQLRFGHPPQEASNLIASARIRLDCHALGIARLDVGTEGIAARLRPAATAGTPR 1033 Query: 1100 LIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENA 1146 P R +RL + + + +F+ L+ +A Sbjct: 1034 --------PGRPR----SRLVYKHKIRPD-RILTAAIRFLAALKRDA 1067 >UniRef50_B2KBP0 DEAD/DEAH box helicase domain protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBP0_ELUMP Length = 1044 Score = 759 bits (1961), Expect = 0.0, Method: Composition-based stats. Identities = 297/862 (34%), Positives = 440/862 (51%), Gaps = 64/862 (7%) Query: 322 LRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKF---- 377 L +EL S +KNW P +A + + + L+A KF Sbjct: 196 LHFEELPSNIKNWAGEAAFIFDNPASDFDATEYDNAVIISPIPHGENYALNANIKFNANM 255 Query: 378 ---------LETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIG 428 L + + G + L EL I I Sbjct: 256 DLATKEINSLSLQGYDIAVFCLNRGEEDRLKELFNNHGI------------LNKVSFKIA 303 Query: 429 AAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEH 488 G+ A I S++L I +R +L G +VH H Sbjct: 304 DITQGYYSVKDKKAYITSSEILDRNYHTSSLLKNFEIEGAKRVR-FKDLVEGDYIVHQTH 362 Query: 489 GVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 548 G+GRY G+ TL+ + L++ Y +KL+VPV + +Y G + PL LGG Sbjct: 363 GIGRYRGLETLDKDTAPTDALVIEYRKGSKLFVPVQDFGKVQKYIGVKGKTPPLSHLGGV 422 Query: 549 AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 608 AW +++ E + A E+L + A R+A D + F DSFP+ TPDQ+QA Sbjct: 423 AWKEVKRRVKEAAQKDAEEILKMEALRSAANAKPLTGDAQLEAEFADSFPYIQTPDQSQA 482 Query: 609 INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDN 668 I+ +L D+ + MDR++ GDVGFGKTEVAMRA + KQV VLVPTT+LA QHY Sbjct: 483 ISEILDDLTRQKTMDRVLVGDVGFGKTEVAMRAVMRTALSSKQVLVLVPTTILAAQHYKT 542 Query: 669 FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 728 F R A++PV +EM+SRF++ EQ I+ ++ +G +DI++GTH+LL D+ F +LGL+I+ Sbjct: 543 FVKRMASFPVSVEMLSRFQTKAEQKIIVEKIRKGTVDIVVGTHRLLSKDISFANLGLVII 602 Query: 729 DEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 788 DEEHRFGV+ KE+IKA A V L L+ATPIPRTLN ++S +R+LS+I TPP R+ VKT Sbjct: 603 DEEHRFGVKQKEKIKAKTAGVHTLMLSATPIPRTLNQSLSSLRNLSLIETPPQGRMPVKT 662 Query: 789 FVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 848 V +++ + A+ +EI RGGQVY++YN V++++ E L LVPEARI + HGQM E Sbjct: 663 IVTPWNNDLAANAVRQEIGRGGQVYFVYNRVQSMESRLELLKRLVPEARICMAHGQMNET 722 Query: 849 ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908 LE+ + F++ +++L+ +TIIE+G+DI ANT+IIE A FGLAQL+QLRGR+GR Sbjct: 723 ALEKTLWAFYNHEYDILLASTIIESGLDISNANTLIIESAQDFGLAQLYQLRGRIGRGDR 782 Query: 909 QAYAWLLTPH---------------------------PKAMTTDAQKRLEAIASLEDLGA 941 +AY +L P T A+KRL A+ +LG+ Sbjct: 783 KAYCYLFHPDWLFQKPKDNIERENNFEDLKAFLTKKKEADPTETAKKRLSALMEFSELGS 842 Query: 942 GFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQ 1001 GF LA D+EIRGAGELLG Q G +G SLY +++ V LK + Sbjct: 843 GFKLALRDMEIRGAGELLGTRQHGFANEVGLSLYCDMVAAEVKKLKGE-----PVEKKYR 897 Query: 1002 TEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLL 1061 V + + + +P +++PD N RL +YK + ++ + + + +LID G LP+ +TL Sbjct: 898 ATVNVPVAAYIPPEYLPDDNERLRYYKELLNSGELEQKKTL-NKLIDLAGPLPEEVKTLS 956 Query: 1062 DIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPT---- 1117 + + +A +L IR +E + FA+ + + L+ K + + Sbjct: 957 KVILISNKAGELNIRHIEATKDFVEFYFAKNFKMPEGAIGELIVKYGNNLKFIPSAKGDG 1016 Query: 1118 -RLKFIQDLSERKTRIEWVRQF 1138 R+ + + IE F Sbjct: 1017 FRINLTRGGANYFNEIENTLNF 1038 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 77/192 (40%), Gaps = 12/192 (6%) Query: 25 AACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPH 84 A A V + V ++ + ++ + +++ ++ E D Sbjct: 17 GAKARFVFDKFSSLDKNSVFVSNEEEDLDAFESALKTWSEGKILT----EVYLSDDK--- 69 Query: 85 QDIISSRLSTLYQLPTMQRGVLIV-PVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRT 143 + LY++ + I L + +K+ + L R L Sbjct: 70 ----GMLMHALYKILKSSAPLAITSTYQNLNIPLPGKKDFLSKLKNIKQTEVLKRGDLID 125 Query: 144 QLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTL 203 L S GY+ + GE+A RG+++D+F G +LP RL F + ++++ FDVD+Q T Sbjct: 126 YLHSCGYKREEFTENPGEFAVRGSVVDVFIHGQKLPARLYFAGNIVETISSFDVDTQNTK 185 Query: 204 EEVEAINLLPAH 215 E I ++P H Sbjct: 186 EYKNEITVIPLH 197 >UniRef50_Q1J0Y7 Transcription factor CarD n=3 Tax=Deinococcus RepID=Q1J0Y7_DEIGD Length = 1041 Score = 753 bits (1945), Expect = 0.0, Method: Composition-based stats. Identities = 321/906 (35%), Positives = 473/906 (52%), Gaps = 62/906 (6%) Query: 224 IELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIE---YWQPLFFSEPLPPLFSYFPANT 280 +E + + + + ++ G E + + FF + L L P Sbjct: 114 LERLGYERDEEPGYFLRGDTLELRLEPGAGVPNGEDPVWLRAEFFGDELDTLRRLLPG-- 171 Query: 281 LLVNTGDLETSAERFQADTLA----RFENRGVDPMRPLLPPQSLWLRVDELFSELKN--- 333 E + ER Q TL D R L P ++L E ++ Sbjct: 172 --------ELTGERIQTFTLEPTADYLTEVKWDATRLDLLPGRVFLDAPEFYASSLGPLI 223 Query: 334 ---WPRVQLKTE----HLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVV 386 WPR++ + P + + +LG + LP + + L+ V+ Sbjct: 224 DTLWPRLREREVTSFGRAPLELTDVDLGLKVLP---YYRARLSELERDVAEWRGAGYRVM 280 Query: 387 FSVESEGRREALGE-LLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALIC 445 V + L + LL +I + + R++E + E GF ++ Sbjct: 281 ILVRHDRTAAYLADKLLGTHEIPWRSVPRVEE---GALGFLRAGGEGGFAIPEHRTVVLT 337 Query: 446 ESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGIT 505 E + G + + + P + + LH+G ++H EHG+G++ G+ T G+T Sbjct: 338 EDLIYGFQGGSALRGKKLVGKP---VTDALGLHVGDYLIHPEHGIGQFQGLETRTVLGVT 394 Query: 506 GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVA 565 +YL L Y A+L VP+ L ++ R+ G ++ L W+RA++KA + +VA Sbjct: 395 RDYLNLEYRGGARLAVPIEQLPVLRRHPGTTDDPPVLSSFDKKDWARAKEKARKNAEEVA 454 Query: 566 AELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRL 625 A LL YA R G +F E +F FE T DQ A+ + D+ P DRL Sbjct: 455 ARLLVQYAARQVTPGNSFPPQPEWDAQVERNFKFELTADQKTALKETMRDLEAPHPADRL 514 Query: 626 VCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISR 685 + GDVGFGKTEVA+RAA V + KQVA+LVPTTLLA+QH F +RF + PVR+E +SR Sbjct: 515 ISGDVGFGKTEVALRAAHRVVGHGKQVAMLVPTTLLAEQHTSTFVERFKDLPVRVEGLSR 574 Query: 686 FRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAM 745 F K+ ILA++A GK+DI+IGTH+LL SDV+FKDLGL+IVDEEHRFGV KE+++A+ Sbjct: 575 FTGDKQAKAILADLAAGKVDIIIGTHRLLSSDVQFKDLGLIIVDEEHRFGVGQKEKLRAL 634 Query: 746 R-----------------ANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 788 R VD L L+ATPIPRTL M+M G+RD+S I TPP R ++T Sbjct: 635 RGLPDVPKDGKLELPEGVKAVDTLALSATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQT 694 Query: 789 FVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 848 + +D + VR+AIL EI RGG+V+Y+++ + +I + L LVPEARI + HG+M E Sbjct: 695 VLAPFDPVTVRDAILNEIERGGKVFYIHDRIASIGARSLYLRNLVPEARIGVAHGRMNEE 754 Query: 849 ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908 ELE +M F F+VL+ TTI+ETG+DIP ANTI+IERAD GLAQL+QLRGRVGR Sbjct: 755 ELEEIMLGFEQGAFDVLLSTTIVETGLDIPEANTILIERADRLGLAQLYQLRGRVGRRQQ 814 Query: 909 QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSME 968 AYA+L P MT +AQ+RL AIA L+DLG+G LA D+EIRG G +LGEEQ G ++ Sbjct: 815 TAYAYLFYPP--RMTENAQRRLWAIADLQDLGSGHLLAEKDMEIRGVGNILGEEQHGHVQ 872 Query: 969 TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLL-PDDFIPDVNTRLSFY 1027 + +Y E+L AV LK + ++L + + L P+ F + R++ Y Sbjct: 873 AVSIDVYTEMLAEAVARLKGEPLEA-----PPTVSIDLPINARLTPEYFDGNEEERIATY 927 Query: 1028 KRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVI 1087 R++ A+T + ++ +L ++G + +D+A+LR A + I Sbjct: 928 GRLSEARTLQAVSRVERDLRKKYGPPTPEVQNFIDLAKLRLTAVAKRALSIGETMTHLQI 987 Query: 1088 EFAEKN 1093 FA K+ Sbjct: 988 TFAYKS 993 Score = 70.3 bits (171), Expect = 4e-10, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 53/123 (43%), Gaps = 15/123 (12%) Query: 106 LIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATR 165 +++ VNT + H HAL ++ G R+ L +L+ GY E G + R Sbjct: 77 VVLDVNTALDLFPTHP--EDHALTLRVGASYPREDLLNRLERLGYERD---EEPGYF-LR 130 Query: 166 GALLDLF------PMGSELPY--RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF 217 G L+L E P R +FF DE+D+LR T E ++ L P ++ Sbjct: 131 GDTLELRLEPGAGVPNGEDPVWLRAEFFGDELDTLRRLLPGE-LTGERIQTFTLEPTADY 189 Query: 218 PTD 220 T+ Sbjct: 190 LTE 192 >UniRef50_C3WG56 Transcription-repair coupling factor n=6 Tax=Fusobacterium RepID=C3WG56_FUSMR Length = 988 Score = 745 bits (1923), Expect = 0.0, Method: Composition-based stats. Identities = 313/861 (36%), Positives = 496/861 (57%), Gaps = 40/861 (4%) Query: 272 LFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSEL 331 + FP N+ E + + R ++ + + +++ ++ E Sbjct: 137 ILDIFPKNS------KYPVRIEFSFNNEVERIAYFDIETQKSVEKKNQVYMYINNNIEEK 190 Query: 332 KNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQA--QQKAPLDALRKFLETFDGPVV--F 387 ++ L N +L KL ++ + ++K+ FL+ + F Sbjct: 191 NSFLDFLNNRNDLKIFIENIDLLNYKLEEILSNSEIKEKSIKGIYNNFLKIAKSVEINKF 250 Query: 388 SVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIG--------AAEHGFVDTVR 439 + E E++ + K Q+I + + R R + G G Sbjct: 251 THEELQNFESIEYVKKIGKDPLQKIKIVSDEEKRYREIFEGYNFEYEKYPLFEG--YKEE 308 Query: 440 NLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTL 499 NL ++ + +L G RV R ++D +N+ E+ G ++H +GVG Y G+ + Sbjct: 309 NLLVLTDRELKGIRVRREKKDKGF-----QRYKNITEIQEGNYIIHENYGVGLYLGIEII 363 Query: 500 EAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAE 559 + +YL + YA + KL+VP+ + I +Y E ++ LG + + R+K AE Sbjct: 364 DG----HDYLKIKYAGEDKLFVPIEGIGKIGKYISIDGEIPEIYNLGRKGFRKKREKIAE 419 Query: 560 KVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQP 619 ++ A E+++I A+R + G++F D + F +SFP++ TP Q QAI V DM Sbjct: 420 EMLQFAKEIVEIQARRDLEAGYSFAPDNLWQEEFEESFPYKETPSQLQAIEDVKRDMESS 479 Query: 620 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 MDR+VCGDVG+GKTEVA+RAAF A KQV ++VPTT+LAQQHY+ F +R N+P+ Sbjct: 480 RIMDRVVCGDVGYGKTEVAIRAAFKAAIEGKQVVLMVPTTVLAQQHYERFTERMKNYPIN 539 Query: 680 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK 739 IE++SR ++KEQTQ L ++ EG +DI+IGTH++L DV+FKDL L+I+DEE +FGV+ K Sbjct: 540 IELLSRLLTSKEQTQTLKKIKEGGVDIVIGTHRILSEDVEFKDLRLVIIDEEQKFGVKAK 599 Query: 740 ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVR 799 E++K +R+ VD+LTLTATPIPRTLN+A+ G+RDLS+I TPP R + TF E +R Sbjct: 600 EKLKKLRSKVDVLTLTATPIPRTLNLALLGIRDLSVIDTPPEGRKPINTFFVEGLEKNIR 659 Query: 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA-RIAIGHGQMRERELERVMNDFH 858 E I++EI R GQV+Y++N V+ I+K + L +++PE +I HGQM R+++ + +F Sbjct: 660 EIIMKEIAREGQVFYIFNSVKGIEKKTQELRKILPEYLKIDFVHGQMTPRDIKEKIKEFE 719 Query: 859 HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 + ++LV TTIIE GIDI ANT+II+RAD GL+Q++QLRGRVGR + Q+Y +LLT Sbjct: 720 NGEIDILVATTIIENGIDIENANTMIIDRADKLGLSQIYQLRGRVGRGNRQSYCYLLTK- 778 Query: 919 PKAMTTDAQKRLEAIASLEDL-GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYME 977 + T A++R E+I +LE++ G G L+ D+ IRGAGE+LGE+Q G +ET G++LYM+ Sbjct: 779 -EYQTKKAKEREESIKNLEEIDGGGLQLSMEDMRIRGAGEILGEKQHGILETFGYTLYMK 837 Query: 978 LLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTEN 1037 +L+ +D +K E ++D+ E+++ P+ +P+++I + + ++ Y+RI K+ Sbjct: 838 MLQEEIDKIKGRFEEDIDDI-----EIKVNYPAFIPNEYI-EKDEKIKVYRRITEVKSII 891 Query: 1038 ELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR-KLEGNEKGGVIEFAEKNHVN 1096 ELE IK ELIDRFG +P A+ L+ +A+KLGI+ LE K I + VN Sbjct: 892 ELENIKDELIDRFGKMPVEAQGFFRYIGLKFRAKKLGIKNALEIKGKVESIIKFNSDKVN 951 Query: 1097 PAWLIGLLQKQPQHYRLDGPT 1117 L+ L+Q+ Y+ T Sbjct: 952 FDVLLKLIQEGLIKYQKKDDT 972 Score = 130 bits (327), Expect = 3e-28, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 97/218 (44%), Gaps = 15/218 (6%) Query: 34 IAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLS 93 + + G ++ + +N ++ +S ++ L ++ ++ Sbjct: 15 LLKEIGGKILYLCSSNRNIEDYYNVLSDIYGGNILKL--------ENTQSKDELEKDNYD 66 Query: 94 TLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHV 153 L L + + ++++ + +++ FL G ++ G+ L L L+ +GY Sbjct: 67 LLEILKSEEDFIILLSLEAILREY----FLEGKRYEIEIGKSLDIKELENSLEESGYNKE 122 Query: 154 DQVMEHGEYATRGALLDLFPMGSELPYRLDF-FDDEIDSLRVFDVDSQRTLEEVEAINLL 212 V E +Y+ RG +LD+FP S+ P R++F F++E++ + FD+++Q+++E+ + + Sbjct: 123 YMVEERNQYSMRGDILDIFPKNSKYPVRIEFSFNNEVERIAYFDIETQKSVEKKNQVYMY 182 Query: 213 PAHEFPTDKAAIELF--RSQWRDTFEVKRDPEHIYQQV 248 + + ++ R+ + E + +++ Sbjct: 183 INNNIEEKNSFLDFLNNRNDLKIFIENIDLLNYKLEEI 220 >UniRef50_C1XT24 Transcription-repair coupling factor (Superfamily II helicase) n=2 Tax=Meiothermus RepID=C1XT24_9DEIN Length = 988 Score = 744 bits (1921), Expect = 0.0, Method: Composition-based stats. Identities = 316/832 (37%), Positives = 458/832 (55%), Gaps = 37/832 (4%) Query: 313 PLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLD 372 P L P LW ++ ++ L LP +LG+Q LP +A+ ++ Sbjct: 185 PSLAPGELWQHLEG-----RDLVTFGLGGPELPK----LDLGYQALPP--YRARIAQFVE 233 Query: 373 ALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEH 432 +R++ E G V+F ++G R L L I + R E L+ G E Sbjct: 234 EVRRWTEQDYGVVLFYKHAKG-RAYLESKLQGINL---RKSGRFECKPGWITLVPGGFEG 289 Query: 433 GFVDTVRNLALICESDLL----GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEH 488 ++D + E L G+ RR + T +P L G ++H EH Sbjct: 290 AYLDPEAKAVCLTEPHLYAFGSGQAGPSRRIVTGETGDPSA-------LAPGDYLIHPEH 342 Query: 489 GVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 548 G+G++ G+ E G+ +YL+L YA +A+LY+PV L L+ R+ G ++ L LG Sbjct: 343 GIGQFVGLEPREILGVKRDYLILQYAGEARLYLPVEQLPLLKRHPGTTDDPPRLSSLGKG 402 Query: 549 AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 608 W +AR+KA + ++AA +L ++A+R A G A+ E L +FP+ TPDQ ++ Sbjct: 403 EWKKAREKAQKDAEELAARMLVLHAKRQATPGRAWAPIPEWDSLIEKNFPYALTPDQEKS 462 Query: 609 INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDN 668 + D+ P MDRL+ GDVGFGKTEVA+RAA V + QVA+LVPTTLLA+QH Sbjct: 463 LEDTFRDLEAPRPMDRLISGDVGFGKTEVALRAAHRVVGHGAQVALLVPTTLLAEQHTQT 522 Query: 669 FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 728 F+ RF PVR+E +SRF S ++ +IL ++ G +DI+IGTH+LL D++FKDLGLLI+ Sbjct: 523 FKSRFEGLPVRVEGLSRFTSELDEQRILRDLEAGAVDIVIGTHRLLSGDLRFKDLGLLII 582 Query: 729 DEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 788 DEEHRFGV KERI+ + VD L L+ATPIPRTL A+ G++DLS I TPP R ++T Sbjct: 583 DEEHRFGVAQKERIREIAETVDTLYLSATPIPRTLYSALVGLKDLSSIQTPPPGRKPIQT 642 Query: 789 FVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 848 + YD +VREAIL E+ RGG+V+Y+++ V IQ L + PEARI + HGQM E Sbjct: 643 VLAPYDPSLVREAILSEMERGGKVFYVHDRVATIQARQRYLENIAPEARIGVVHGQMPEG 702 Query: 849 ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908 ++E VM F F+VL+ TTIIE+G+DIP ANTI+IERAD GLA L+QLRGRVGR Sbjct: 703 DIEEVMLAFAEGAFDVLLATTIIESGLDIPEANTIVIERADRLGLAALYQLRGRVGRRDQ 762 Query: 909 QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSME 968 +AYA+ P +T A++RL AIA L DLG+G LA D+EIRG G LLG EQ G + Sbjct: 763 EAYAYFFHPP--RLTEAAERRLSAIADLSDLGSGHLLAEKDMEIRGVGNLLGPEQHGHIR 820 Query: 969 TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1028 + +Y ELL A+ LK + + ++L + + L ++IP R +Y Sbjct: 821 AVSLEIYTELLAEAIAKLKGEK-----TEPEKHVTLDLAVSARLTPEYIPSAAARSRYYG 875 Query: 1029 RIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088 R+A AK ++ I EL +R+G P L + RLR A+ G+ + + + Sbjct: 876 RLAEAKRLAQVARIAGELRERYGEPPVEVENFLALTRLRLLAEAKGVVSITEDLTWLQLV 935 Query: 1089 FAEKNHVNPAWLIGLLQKQPQHYRLDG-PTRLKFIQDLSERKTRIEWVRQFM 1139 F E+ ++ L+ P L P + + ++ + V + Sbjct: 936 F-ERWPLDYDS--KALRALPYRIELTQYPPGFRIAKKGLSQEQYSQAVSDLL 984 Score = 61.5 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 63/175 (36%), Gaps = 40/175 (22%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 L L A A L A + P +L+ P+ + L + + F V E Sbjct: 13 LPGLPQVARARLFA----QTEPPAILLVPEHR--LDFYRNLEPF-GVGVYVNPGLEAW-- 63 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 + G ++ +Q LV++ G+R R Sbjct: 64 ----------------------GEAGWVVFDYREALQ--AFPQDPSAWRLVLEVGRRYLR 99 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193 + L +L GY + E G +A RG ++++ RL+FF DE+++++ Sbjct: 100 EDLLERLTRMGYLRESEEGEAG-FAVRGEIVEI------GEVRLEFFGDELEAIK 147 >UniRef50_Q9ZJ57 Transcription-repair-coupling factor n=19 Tax=Helicobacter RepID=MFD_HELPJ Length = 1001 Score = 739 bits (1909), Expect = 0.0, Method: Composition-based stats. Identities = 303/1059 (28%), Positives = 507/1059 (47%), Gaps = 112/1059 (10%) Query: 43 VLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLY----Q 97 +L D + + + IS F + + D + L L Sbjct: 18 ILACKDFKESELAKEVISYFKPNIKAVLFPELRAKKNDDLRSFFEEFLQLLGGLREFYQA 77 Query: 98 LPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVM 157 L Q ++I P++ L+ + L + + ++ + L+ +L GY +D V Sbjct: 78 LENKQETIIIAPISALLHPLPKKELLESFKITLL--EKYNLKDLKDKLFYYGYEILDLVE 135 Query: 158 EHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF 217 GE + RG ++D++ S+ YRL FD + +++E++ PA + Sbjct: 136 VEGEASFRGDIVDIYIPNSK-AYRLS----------FFDAE-CESIKELD-----PATQM 178 Query: 218 PTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFP 277 + +E+ E P LFS Sbjct: 179 SLKEDLLEI----------------------------------------EIPPTLFSL-- 196 Query: 278 ANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRV 337 E D + E ++ L LW ++ L + + Sbjct: 197 --------------DEPSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLGVYQSI 242 Query: 338 QLKTEHLPTKAANANLGFQKLPDLAVQA--QQKAPLDALRKFLETFDGPVVFSVESEGRR 395 + L A+L + + L + +G + Sbjct: 243 -ISPRALEEIQELASLNELDDERFKFLKVLENAQGYEDLEIHVHALEGFIALHSN----- 296 Query: 396 EALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVA 455 LLA K + + +A + +I F R I L Sbjct: 297 -RKITLLAPNKTILDNSISVLDAGN--MECVIAPFVLNFKTPDR--IFIS---LNSFERK 348 Query: 456 RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAN 515 ++RQ S+ L EL+ G+ VVH ++GVG ++ + G ++L + Y Sbjct: 349 KKRQKSK---------LALNELNAGEWVVHDDYGVGVFSQLIQHSVLGSKRDFLEIAYLG 399 Query: 516 DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR 575 + KL +PV +LHLI+RY ++ +LG ++ + + K K+ ++A +++++ A+R Sbjct: 400 EDKLLLPVENLHLIARYVVQSDSVPVKDRLGKGSFLKLKAKVRAKLLEIAGKIIELAAER 459 Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 G + ++F FE T DQ +AI + D+ MDRL+ GDVGFGKT Sbjct: 460 NLILGKKMDTHLAELEIFKSHAGFEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKT 519 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 EVAM A F A N Q A++VPTTLLA QH++ + RF N+ V++ + R+ E++++ Sbjct: 520 EVAMHAIFCAFLNGFQSALVVPTTLLAHQHFETLKARFENFGVKVARLDRYIKTSEKSKL 579 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 L V G +D+LIGTH +L KFK+LGL++VDEEH+FGV+ KE +K + +V L+++ Sbjct: 580 LKAVELGLVDVLIGTHAIL--GTKFKNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMS 637 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYL 815 ATPIPRTLNMA+S ++ +S + TPP R +TF++E + +++E I RE+ R GQ++Y+ Sbjct: 638 ATPIPRTLNMALSQIKGISSLKTPPTDRKPSRTFLKEKNDELLKEIIYRELRRNGQIFYI 697 Query: 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 +N + +I K +L +L+P+ +IAI H Q+ E E +M +F + VL+CT+I+E+GI Sbjct: 698 HNHIASISKVKTKLEDLIPKLKIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGI 757 Query: 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 +P ANTIII+ A +FGLA LHQLRGRVGR + + + L K++ A KRL A+ Sbjct: 758 HLPNANTIIIDNAQNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEK 817 Query: 936 LEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLE 995 LG+G ++A HDLEIRG G LLG++QSG ++ IG++LY +LE+A+ L G++ Sbjct: 818 NSYLGSGESIAYHDLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELSGGKKR--- 874 Query: 996 DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPD 1055 + E++L + + L + I + RL Y+R++ + +E+ +I E+ DRFG + D Sbjct: 875 --LEKSVEIQLGVSAFLNPELIASDSLRLDLYRRLSLCENVDEVGQIHEEIEDRFGKMDD 932 Query: 1056 PARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH 1094 + L I L+ A +LGI KL + + ++++ Sbjct: 933 LSAQFLQIITLKILANQLGILKLSNFNQNITLTYSDEKK 971 >UniRef50_C3XNZ2 Transcription-repair coupling factor n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XNZ2_9HELI Length = 1011 Score = 730 bits (1885), Expect = 0.0, Method: Composition-based stats. Identities = 309/1071 (28%), Positives = 527/1071 (49%), Gaps = 106/1071 (9%) Query: 33 EIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRL 92 E R ++++ D ++AL ++++F D+ D +Q+ +S+ Sbjct: 15 EFKTRFKNGLIILCEDGRSALS-CGDVAKFLGFKTFVFPDFRAAFGDDLRSYQEELSALF 73 Query: 93 STLYQLPTMQ-RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYR 151 TL + T + +L P+ TL+ + L + +K G L+ + + L GY Sbjct: 74 WTLREFYTFKGEKILFSPLYTLLHPLPNAESL--LTMQLKVGDVLNLKSFKENLLYFGYE 131 Query: 152 HVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR-TLEEVEAIN 210 VD V GE + RG ++D+ + PYR+ FDDEI+S+R FD +Q + E ++++ Sbjct: 132 FVDLVELGGEVSMRGDIIDILTPNEQNPYRITLFDDEIESVRYFDSQTQLCSKENLDSLE 191 Query: 211 LLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLP 270 + PA + + E ++ + I S L G + E L Sbjct: 192 IPPAF-LSLNAESYE----NLKEAILAILQKQSILDGGSGDILGFG------FWCLENLG 240 Query: 271 PLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSE 330 + +V E + E F + + ++ + ++L E E Sbjct: 241 ITKDFLQDYPFVVLPNVKELAKEALG------FNEQNANKLQCVFEGETL-----ESTQE 289 Query: 331 LKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVE 390 +++ + + + A Q PLDA F D + Sbjct: 290 FEDFTYNFNSLQSFLEFHKQKTITILAKSE-AQVRQAGIPLDAPYTFKFGVDYAI----- 343 Query: 391 SEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHG--FVDTVRNLAL---IC 445 LL + + + +++ + G V +A+ I Sbjct: 344 ---------NLLGKESLILSLNTPQKQQKRAKVKILLDELKVGDYVVHCDYGIAIFSGIT 394 Query: 446 ESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGIT 505 ++++ G R+ L RY G Sbjct: 395 QANIFG------------------ATRDFIAL--------------RYLG---------- 412 Query: 506 GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVA 565 + KL +PV +L I RY + L KLG ++++ ++K EK+ +A Sbjct: 413 ----------EDKLLLPVENLDRIDRYIADSGGIPILDKLGKGSFAKLKEKVKEKLFVIA 462 Query: 566 AELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRL 625 ++ + A+R +G F +E+ LF + F T DQ QA+N + D+ MDRL Sbjct: 463 NAIIALAAKRELIDGVVFDVQKEEILLFQNKSGFHYTEDQTQAVNEIFKDLSSGKVMDRL 522 Query: 626 VCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISR 685 + GDVGFGKTEVAM A F+A + Q A++VPTTLLA QH++ ++RF + ++ + R Sbjct: 523 LSGDVGFGKTEVAMNAMFVAFLSGFQSAMIVPTTLLAYQHFNTLKERFVPFGFKLARLDR 582 Query: 686 FRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAM 745 + S KE+ QIL ++ G+++ ++GTH LL + +FK+L L++VDEEH+FGV+ KE+IK + Sbjct: 583 YVSTKEKKQILRDLKNGELNAVVGTHALLSA--EFKNLALMVVDEEHKFGVKQKEKIKDL 640 Query: 746 RANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILRE 805 N+ +L+++ATPIPRTLNMA+S ++ LS + TPP+ R A +TFV++ D +++E I+RE Sbjct: 641 SQNIHLLSMSATPIPRTLNMALSHIKGLSELKTPPSERQATRTFVKQLDDTLLKEIIMRE 700 Query: 806 ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 865 + RGGQ++Y++N + I++ E + ++P +IAI H Q+ +E E ++ +F + +L Sbjct: 701 MRRGGQMFYIHNSIATIRQKKEEILRVLPTLKIAILHSQIPAQEAEDIVLEFAKGTYQIL 760 Query: 866 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTD 925 +CT+I+E+GI +P ANTI+++ A++FG+A LHQLRGRVGR + + + +LL +++T D Sbjct: 761 LCTSIVESGIHLPNANTILVDNANYFGIADLHQLRGRVGRGNKEGFCYLLIEDFESITED 820 Query: 926 AQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDA 985 A+KRL A+ LG+G ALA HDLEIRG G LLGE QSG ++ IG+SLY+ +LE+A+ A Sbjct: 821 AKKRLLALEKNSFLGSGGALAYHDLEIRGGGNLLGEAQSGHIKNIGYSLYLRMLEDAIFA 880 Query: 986 LKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVE 1045 L EV+L + + L + I RL Y+R++ + E + I+ E Sbjct: 881 LSGNVAQK-----EANVEVKLSVTAFLNAELIESERLRLEIYRRLSKCQEEKAVFAIEGE 935 Query: 1046 LIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVN 1096 + +RFG L R LD+ R++ A+ GI + ++ + ++ Sbjct: 936 IEERFGRLDIYTRQFLDLIRIKIVARNCGIASIMNYQQNISFTSNNGDKIS 986 >UniRef50_A9BHZ6 DEAD/DEAH box helicase domain protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHZ6_PETMO Length = 974 Score = 724 bits (1870), Expect = 0.0, Method: Composition-based stats. Identities = 251/679 (36%), Positives = 410/679 (60%), Gaps = 9/679 (1%) Query: 458 RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDA 517 + + + +L+ G VVH ++G+G Y G+ +E E++ L Y++++ Sbjct: 302 KSKKEDKRLEYIPLLDWEDLNDGDLVVHEDYGIGIYHGVNKVETLLGLREFVTLEYSDNS 361 Query: 518 KLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAA 577 ++YVPV L +S+Y G E+ + L +W +QK E+++ EL IYA R Sbjct: 362 RVYVPVGRLDKLSKYIG-DPESVKISSLNSKSWKNTKQKVKEEIKQKIEELQKIYALREN 420 Query: 578 KEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV 637 + G D E + F ++FP+ TPDQ ++I V+ D+ MDRL+ GD GFGKTEV Sbjct: 421 QRGIQLFGDPELEEKFKETFPYVETPDQEKSIKEVMRDLESERPMDRLLSGDSGFGKTEV 480 Query: 638 AMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILA 697 AMRAAF V ++ QV +L PTT+LA+QHY+NF+ R ++ ++I +++R ++ KE+ + Sbjct: 481 AMRAAFRTVVSNYQVLLLAPTTILAKQHYENFKQRMDSFGIKIALVTRHKTQKEKKDLFE 540 Query: 698 EVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTAT 757 + +G++DI+IGTH LL ++ K+LGL+IVDEE RFGV KE+ K + V+ L ++AT Sbjct: 541 SIGKGQVDIVIGTHALLSDLLQVKNLGLVIVDEEQRFGVLQKEKFKKLSDGVNFLMMSAT 600 Query: 758 PIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYN 817 PIPRTL M++SG+RD+S I+TPP RL ++TF+ +Y +VR AILRE RGGQV Y++N Sbjct: 601 PIPRTLYMSISGLRDISTISTPPVGRLPIQTFIGKYSDKLVRTAILREKSRGGQVIYIHN 660 Query: 818 DVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 877 V+ + + ++L L+PE +IA+ HG ++E + +ND + ++L+ TTIIE GIDI Sbjct: 661 RVQELNELHKKLRTLIPEIKIAMVHGGTPKKEFIKSINDLYDGNIDLLLSTTIIENGIDI 720 Query: 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 P NT+I++ + +G++QL+Q++GRVGRS+ +A+ + L K +T +KRLEAI Sbjct: 721 PNVNTLILDDPERYGISQLYQIKGRVGRSNRRAFVYFLFK--KEVTPQTKKRLEAIKQYN 778 Query: 938 DLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDL 997 + G+G LA DLEIRG G++LG EQ G + IG+ LY E+L + +E ++ Sbjct: 779 EPGSGLKLALRDLEIRGYGDILGIEQKGHINAIGYHLYHEMLNKILFEYGIKKEEEIQKP 838 Query: 998 TSQQTEVE-LRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDP 1056 + TE++ ++ ++P+ +I + R+ Y+RI+ AKT +++E+I+ E+ D++G P+ Sbjct: 839 QTY-TEIKGIKGSLVIPESYISNSIERMRIYRRISVAKTVDDVEDIRSEIRDKYGKFPEE 897 Query: 1057 ARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGP 1116 L A ++ +A GI+++E + I F +N VNP +I K + Sbjct: 898 VERLFQYALIKVKANMEGIKEIEIGD--TYISFKFENDVNP--VIEKYNKYSRKITFYPE 953 Query: 1117 TRLKFIQDLSERKTRIEWV 1135 T+ + +E V Sbjct: 954 TKELISYGPKDHMKYMEKV 972 Score = 169 bits (429), Expect = 6e-40, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 110/282 (39%), Gaps = 25/282 (8%) Query: 35 AERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDIISSRLS 93 ++ +L+ PD + F D+ V D++ P+++ +I + R+ Sbjct: 13 LKKVNKQKILVLPDGY--------LQDFDDEEEVFIYPDFDIFPFENLDISPNIKAKRMK 64 Query: 94 TLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHV 153 TL+ L T + ++ ++L++ P + +K G D GY Sbjct: 65 TLHALLTKENVTVLTTFSSLIRYTLPKNEFVSK--KIKVGDTFDLD--HNVPYHLGYNLS 120 Query: 154 DQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLP 213 ++V GEY+ RG + D F E P R++ +D+ ID + FD SQR++E ++ + ++P Sbjct: 121 EEVTSPGEYSKRGFVRDFFIPIYEQPVRIELWDEVIDRISFFDSYSQRSIENLKEVEIIP 180 Query: 214 AHEFPTDKAAIELFRSQWRDTFEVKRDPEHI-YQQVSKGTLPAGIEYWQPLFFSEPLPPL 272 E +E + + + + E + Q + P F + + Sbjct: 181 GSEIMKFDHNLEFYEERLKKYLNGTNEEEFLTLDQFNT----------LPGIFYKDKNTI 230 Query: 273 FSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPL 314 FSY + + + E + +E + R + Sbjct: 231 FSYLNEDGDIYLI-NKEEIINSYSEKEKENYEMCDTELKRKI 271 >UniRef50_B9K8D6 Transcription-repair coupling factor n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K8D6_THENN Length = 895 Score = 715 bits (1845), Expect = 0.0, Method: Composition-based stats. Identities = 267/632 (42%), Positives = 396/632 (62%), Gaps = 12/632 (1%) Query: 467 PDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSL 526 + ++ E+ G+ VVH EHG+ + GM L++ +YL L Y + A LYVPV + Sbjct: 240 RSLPLVDIDEIEEGELVVHKEHGIAIFEGMIRLKSVLGERDYLKLKYED-AVLYVPVEKI 298 Query: 527 HLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 + RY G L +L W R +K E + EL+++Y +R G D Sbjct: 299 DRVHRYIG-DPSQVKLDRLNRGRWKRTLKKVREDIEKRVRELVELYLKREEVRGTLLPGD 357 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 E + F ++FP+ TPDQ + I VL+D+ MDRL+CGD G GKTEVA+RAAF AV Sbjct: 358 PELEEKFAETFPYIETPDQQKCIEEVLTDLSSEKPMDRLLCGDAGVGKTEVALRAAFRAV 417 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 + KQVAVLVPTT+LA+QHY+NF++R + VR+E++ R+ +E+ +IL + +G+ID+ Sbjct: 418 VSGKQVAVLVPTTVLARQHYENFKERLEPFGVRVELLDSSRTLRERKEILEGLKKGEIDV 477 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 +IGTH LL V+F DLGL+I+DEE +FGV KE+ K MR +V++L+L+ATPIPRTL+MA Sbjct: 478 VIGTHALLNERVEFSDLGLVIIDEEQKFGVEQKEKFKKMRLSVNVLSLSATPIPRTLHMA 537 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 +SGM+DLS+I PP R V ++ EY+ +V+ A++RE+ RGGQV Y++N VE + + Sbjct: 538 LSGMKDLSVINAPPPGRKPVHVYIAEYNEELVKGAVVREVNRGGQVIYVHNRVEELPEVL 597 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 E L + PE RIA+ HG+M R +E+V+++F+ +VL+CTTIIE G+DIP ANT+I++ Sbjct: 598 ENLKRMFPELRIAMAHGKMSRRVMEKVVHEFYSGNIDVLLCTTIIENGVDIPNANTLIVD 657 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 A +GLAQL+QLRGRVGRS +A+A+ L P K + A +RL + + G+G +A Sbjct: 658 DAHRYGLAQLYQLRGRVGRSDRRAFAYFLYP--KGVPKSALERLRVLKAHTGPGSGLQIA 715 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVEL 1006 D+E+RG G++LG EQ G++ +IG LY E+L V ++E+ Sbjct: 716 MKDMEMRGIGDVLGLEQHGNIISIGLKLYNEILRETVTK-----VKKKRVERKHTVQIEI 770 Query: 1007 RMPS---LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDI 1063 P +P+D+I + RL Y+R+ASA E E+EEI E+ DRFG P+ + LLD Sbjct: 771 ENPPGRFFIPEDYISNPVERLRMYRRLASASEEGEIEEILEEMRDRFGEPPEEVKLLLDY 830 Query: 1064 ARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHV 1095 R+R +A KLGIRK+ + + + + + Sbjct: 831 FRIRIRASKLGIRKIRFDHFMVELLPGKNSPL 862 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 96/227 (42%), Gaps = 14/227 (6%) Query: 43 VLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ 102 +L+ P+ + + + + LP + ++ R+ L++L + Sbjct: 4 ILLVPNERE----------IHLEGYLFYPSRDNLPLEDVPLSPEVKKKRMEILWRLLKGE 53 Query: 103 RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEY 162 ++ + L +++ L + +++ + GY V GE+ Sbjct: 54 NLKIVTTLKALTEKIFSPESLKERTIEVRRSASFYLSP--ERFVEMGYERTFTVQMPGEF 111 Query: 163 ATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKA 222 + RG +LD+F G + P R++ F + ++ +R FDV +QR+ ++V+ + +LP + D + Sbjct: 112 SIRGGILDIFSPGYDFPVRIELFGEVVEDIRFFDVSTQRSFQKVDEVYILPFLDEYGDSS 171 Query: 223 AIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPL 269 ++ F R T E Y+++ K E + LFF E + Sbjct: 172 LLD-FVKDVRFTCENLEKALTEYRKIRKELKDLLKEKY-DLFFDEGV 216 >UniRef50_D1B5L3 DEAD/DEAH box helicase domain protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5L3_THEAS Length = 994 Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 296/843 (35%), Positives = 447/843 (53%), Gaps = 42/843 (4%) Query: 272 LFSYFPANTLLV---NTGDLETSAERFQADT------LARFENRGVDPMRPL------LP 316 L FP + DL F +T L +E G+ R L +P Sbjct: 138 LVDLFPPGDRAIRVAFDDDLVEEIRVFSPETQRAVASLDSWEMGGLKGGRSLTLLDVPVP 197 Query: 317 PQSLWLRVDELFSELKN----WPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLD 372 + ++ + ++ W +++ + LP A ++L + + V + Q P Sbjct: 198 FGLVVFEPGQVEIQCESAVWLWEQMREEIHSLPGAADWSSLASRVQGVIRVSSSQGDPSA 257 Query: 373 ALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEH 432 L + + F G + E+EG + R ++ A+ G ++ G+A Sbjct: 258 MLER-VPNFAGRL---KEAEGFVLDMRSKGFRTLFLGSTRGYVEWAAGCGMEVIRGSASE 313 Query: 433 GFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGR 492 G +D + + E D+ G R D+LI G +VH ++GV R Sbjct: 314 GALDLSERVLYLSEVDVAGVRPPSSPAGKPPADVLDSLIS-------GDLMVHEDYGVCR 366 Query: 493 YAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSR 552 + G+ +E GG+ +Y+ L +A +L +P + + RYAG A L L WSR Sbjct: 367 FLGIEMIEQGGVQQDYIALEFAQGKRLLMPTYRIARLYRYAG-DPAEAELDSLKRGRWSR 425 Query: 553 ARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAV 612 + Q+A EK R+ A LL A+R + G AF + + +FP+ T DQ + + Sbjct: 426 SYQEAKEKAREAAERLLSAQARRHSARGIAFDPLEREMEELRSTFPYRETVDQVRCWEEI 485 Query: 613 LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDR 672 +DM +P+ MDRL+ GDVGFGKTE+A+RAAF A + QV V+ PTTLLA QH F R Sbjct: 486 RADMERPVPMDRLLVGDVGFGKTELALRAAFKAAMSGYQVVVVTPTTLLASQHLSTFASR 545 Query: 673 FANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH 732 + +P+R+E + RF Q +IL + AEG++DILIGTH++L DV+ ++LGL+++DEEH Sbjct: 546 LSPFPLRVEALYRFVPRSRQEEILNDFAEGRVDILIGTHRILGDDVRARNLGLIVLDEEH 605 Query: 733 RFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE 792 RFGV KER + D+L L+ATPIPRTL +A+ G +D+S++ TPP R V T V Sbjct: 606 RFGVMQKERWRERFPGADVLMLSATPIPRTLQLALGGYKDISVMTTPPVDRRPVVTVVSP 665 Query: 793 YDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 852 + +V+ A+LRE+ RGGQV++++N ++++ +A R L+P R+ + HG+MR+ ELE Sbjct: 666 WQDELVKGAVLRELSRGGQVFWVHNRIQSMHRAFLRAKALLPGVRVEMAHGRMRDSELES 725 Query: 853 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 +M F R +VL+CTTIIE+G+D+P NTII+E A GLAQL+QLRGRVGR QA+A Sbjct: 726 LMARFVEGRLDVLLCTTIIESGLDLPRVNTIIVEDAHRMGLAQLYQLRGRVGRRSDQAFA 785 Query: 913 WLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF 972 L P A +RLEAI SLE+LG+GF LA DL IRG GELLG Q G + ++ Sbjct: 786 LFLYPRGAEAGR-ALERLEAIGSLEELGSGFHLAMMDLSIRGGGELLGTAQHGHVSSLSP 844 Query: 973 SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIAS 1032 LY ++LE V LK G E VE +P+ ++ D R+ Y+R+ Sbjct: 845 ELYFQMLEREVTRLKGGAELPP---------VEWGYSPSIPEWYVEDQPLRVRLYRRLFL 895 Query: 1033 AKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEK 1092 +EL++++ E++DRFG +P L+ ARLR L ++ + F + Sbjct: 896 PMDASELDQLRDEMVDRFGPVPHQVEELILAARLRVLLAGL-ASEITIGRDQVQVRFRDS 954 Query: 1093 NHV 1095 V Sbjct: 955 AAV 957 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 41/173 (23%), Positives = 76/173 (43%), Gaps = 10/173 (5%) Query: 39 AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQL 98 V+I P + + L +++ ++ L +P Q + R L Sbjct: 18 PDRFVVILPGWSDVVTLSSDLACLGREVSPLLPP---VPLGVKEGVQAHLLHRGRVLEDW 74 Query: 99 PTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVME 158 + G++ ++ + P ++KG R R +L + S GY V V Sbjct: 75 IRLGGGLITSAAGAVLPALSPSGHFQ-----LRKGDRC-RSSLIHWISSQGYERVPVVWA 128 Query: 159 HGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINL 211 G++A RGAL+DLFP G + R+ F DD ++ +RVF ++QR + +++ + Sbjct: 129 PGQWALRGALVDLFPPG-DRAIRVAFDDDLVEEIRVFSPETQRAVASLDSWEM 180 >UniRef50_C0QQC7 Transcription-repair-coupling factor (Trcf) (ATP-dependent helicase mfd) n=2 Tax=Hydrogenothermaceae RepID=C0QQC7_PERMH Length = 947 Score = 712 bits (1838), Expect = 0.0, Method: Composition-based stats. Identities = 274/730 (37%), Positives = 427/730 (58%), Gaps = 39/730 (5%) Query: 417 EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAE 476 E D + V A I E + + + Sbjct: 253 EDIDNSFKINRLPLRQPVVLKDEKTAFIPE-------------------DSKKVDLEIQP 293 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 + G ++H + G+G + G+ T E G ++++L YAN+ K+YV I RY Sbjct: 294 IKEGDYIIHEDFGIGIFRGIETREIRGKKYDFMILEYANNEKVYVSYLHFDKIHRYKASG 353 Query: 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596 L ++GG +W ++K ++ +A +L+ +Y +R + + + F S Sbjct: 354 --VITLDRIGGTSWRNLKRKVKNSLKKIAFQLVKLYTERKQIRRDPLVVENDLIEAFERS 411 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 FP+ TPDQ +AI + D+ M+R++CGDVGFGKTEVA+RA F+ N KQ VLV Sbjct: 412 FPYIETPDQLKAIKDIKRDLSSDRPMERVICGDVGFGKTEVAIRAVFINAVNGKQSLVLV 471 Query: 657 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS 716 PTT+L+ QHY NF++R + V +E +SR +S KE I V EGKID++IGTHK L Sbjct: 472 PTTVLSYQHYRNFKERLEPFGVVVENLSRLKSKKETEDIFKRVKEGKIDVIIGTHKALNE 531 Query: 717 DVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 776 ++KFK+LGLL++DEEHRFGVR KE+IKA++ +VD L +TATPIPRTLNMA+SG++D+S+I Sbjct: 532 NLKFKNLGLLVIDEEHRFGVRAKEKIKALKKDVDTLYMTATPIPRTLNMALSGLKDMSVI 591 Query: 777 ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 +TPP R+ KTFV + ++++A+ E+ RGGQV+YL+N +E+I++ A+ L+ L A Sbjct: 592 STPPEGRVETKTFVSIFSEDLIKKAVNFELERGGQVFYLHNRIESIKERADHLSSLFRGA 651 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 RI I HG+MR +E+E+++ +F ++ ++LV T+IIETGIDIPTANT+IIERAD FGLAQL Sbjct: 652 RIGIAHGKMRPKEIEKIILEFIERKIDILVSTSIIETGIDIPTANTLIIERADLFGLAQL 711 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 + LRGRVGR + QAY +LL P +T +A+KR++ I L G+G ++ D++IRG G Sbjct: 712 YHLRGRVGRGNIQAYCYLLLPPQ--ITENAEKRIDVILRLTRPGSGLKVSIEDMQIRGVG 769 Query: 957 ELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 +LG EQSG ++ +G+ +Y++LL+ A++ RE + +++ S +P+DF Sbjct: 770 NILGVEQSGHIKAVGYEMYLKLLQEAINEEMDRRER--------EPVIQVDFESYIPEDF 821 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076 IPD R++ Y IA E++ +K L + + +P L+I++L++ A+ GI Sbjct: 822 IPDPQERMNIYMAIAKTTDIEEIDRLKEYLKNFYDFIPSAFSLYLEISKLKKAAKNSGIT 881 Query: 1077 KLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVR 1136 K+E E I F + LI + + + R G R++ + K+ I + Sbjct: 882 KIELKEPVSTIYFDSDFDPD---LIMEIARNFET-RGIGTDRIEIFLN----KSEINKLT 933 Query: 1137 QFMRELEENA 1146 + +E+A Sbjct: 934 DILSAKKESA 943 Score = 92.3 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 91/225 (40%), Gaps = 21/225 (9%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-----QMVMNLADW 73 + TG+ + A A+ V+I PD + ++++ + D V+ L + Sbjct: 5 IFGATGSYPEYITASTAKE---RTVVILPDRKRQKLFLNDLNAYLDFFKRDIKVIELPES 61 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKG 133 + + R L L + + + +L +V + +K G Sbjct: 62 DD------PSDIESQIKRNLFLMYLLKGKDFIGVATEKSLDIKV--DKNFSERLIDIKTG 113 Query: 134 QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193 ++RD L +L +GY + + GE++ +G + ++ + ++D F D+++S+ Sbjct: 114 SEINRDLLIHKLIESGYIREEYIENEGEFSVKGGFISVYIPFYGV-VQIDLFGDQVESV- 171 Query: 194 VFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK 238 F T + + ++ + P ++ P + + Q+RD V+ Sbjct: 172 -FLKSKLETRKSINSVTIFPLYDKPL--ISRDGIDLQFRDIETVR 213 >UniRef50_A8F4U5 DEAD/DEAH box helicase domain protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F4U5_THELT Length = 939 Score = 711 bits (1836), Expect = 0.0, Method: Composition-based stats. Identities = 261/669 (39%), Positives = 408/669 (60%), Gaps = 7/669 (1%) Query: 459 QDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAK 518 + + I + EL G+ VVH ++G+G Y G+ + T EY +L Y + Sbjct: 274 PQTSQKSRDQIPIFDEEELIEGEFVVHRDYGIGVYDGVKKISNPLGTREYFVLRYEDST- 332 Query: 519 LYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAK 578 +YVPV +H I +Y G N + ++ W + ++ +R+ EL+ IY R Sbjct: 333 VYVPVERIHKIHKYIG-DTRNVRIDRIHSGNWKKRIERVKRNLREKVEELIRIYDTRQKI 391 Query: 579 EGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVA 638 G + D E + F + FP+ T DQ AI VLSD+ MDRL+CGD G+GKTEVA Sbjct: 392 SGLSLPGDPELEKRFAEFFPYAETDDQMTAIEEVLSDLANDKPMDRLLCGDAGYGKTEVA 451 Query: 639 MRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAE 698 +RAAF V + KQVAVLVPTT+LA+QHY F R + + +++ ++ R S + +IL Sbjct: 452 LRAAFKCVVSGKQVAVLVPTTVLARQHYKIFTQRMSPFGIQVRLLDRSISTIMKKEILDG 511 Query: 699 VAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATP 758 + GKID++IGTH LLQ++V+F DLGL+I+DEE FGV KE+ K +R NV++L+L+ATP Sbjct: 512 LFRGKIDVIIGTHALLQNNVRFSDLGLVIIDEEQSFGVEQKEKFKQLRTNVNVLSLSATP 571 Query: 759 IPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYND 818 IPRTL+MAM+GM+DLS+I TPP RL V T+V +Y + +VR A+LREI RGGQV Y++N Sbjct: 572 IPRTLHMAMTGMKDLSVINTPPIGRLPVITYVAKYSNQLVRGAVLREINRGGQVIYVHNR 631 Query: 819 VENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 + +IQ + L ++PEA+I + HG+M R+L + F+ +V++CT+I+E+GIDIP Sbjct: 632 IHDIQDVYQNLQHIIPEAKIVLAHGKMGIRKLTEAVRSFYEHDSDVILCTSILESGIDIP 691 Query: 879 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLED 938 ANTII++ + +GLAQL+QLRGRVGRS +A+A+ L H ++ A +RL+AI L Sbjct: 692 NANTIIVDDSHRYGLAQLYQLRGRVGRSTKRAFAYFL--HDSEISEKALQRLQAIKQLTG 749 Query: 939 LGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLT 998 G+GF LA D++IRG G + G EQ G++ +G +LY+E++ + +K + S + Sbjct: 750 SGSGFQLALRDMQIRGVGSVFGFEQHGNINDVGLNLYLEIMNQQLKGIKEEKSESRKLFV 809 Query: 999 SQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPAR 1058 + E + ++P D++ R+ Y+R AS +T +E++ + EL DRFG LP+ A Sbjct: 810 DTEME-GIPGELVIPPDYVESPLERMRIYRRFASCETVSEIDGMVEELHDRFGKLPNQAL 868 Query: 1059 TLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNP--AWLIGLLQKQPQHYRLDGP 1116 L+++ ++R A IRK+E + + + ++ + ++ +K Y ++ Sbjct: 869 MLVELFKIRLLASSKHIRKIEYRDNILKLIYEKQPSLKFKGKFICNEREKTYFFYNVEPG 928 Query: 1117 TRLKFIQDL 1125 + F+++L Sbjct: 929 QVVGFLKEL 937 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 57/402 (14%), Positives = 133/402 (33%), Gaps = 50/402 (12%) Query: 34 IAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLS 93 + PV+++ P A L +++ F + P++ + ++ R+ Sbjct: 8 LKLNLEKPVLIVVPTEYEAQLLSQKLNAF------YFPSHDVFPFEEVAVSFEVRCRRIE 61 Query: 94 TLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHV 153 L++L + V++ ++ + ++ L A +++KG+ + + GY Sbjct: 62 ILWKLLNDPKIVIVCTLHAISRKTFSPVQLRQAARILRKGEVFHNPE--ETMLNLGYDRT 119 Query: 154 DQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLP 213 V GE++ RG ++D F + P R++ FD I+++R FD +QR++ +VE LLP Sbjct: 120 YIVRTGGEFSVRGDVIDFFGPLYDNPVRVELFDQTIEAIRCFDASTQRSVFKVEEAFLLP 179 Query: 214 AHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273 E+ ++ + ++ + Sbjct: 180 VREYLCNEHLFDTVPAKLGSN-----------------------------------STIL 204 Query: 274 SYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKN 333 Y + + + + E F E + + + L ++ Sbjct: 205 DY---SDFEIFVAEFDRCQEEFAKREREAREMLEKKQIEDYVENSQI--SFSSLVKRIEF 259 Query: 334 WPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEG 393 + +++ L + ++P + + R + V G Sbjct: 260 FKPLEIDLNTLKILPQTSQKSRDQIPIFDEEELIEGEFVVHRDYGIGVYDGVKKISNPLG 319 Query: 394 RREALGELLARIK--IAPQRIMRLDEASDRGRYLMIGAAEHG 433 RE + +RI ++ + R + I G Sbjct: 320 TREYFVLRYEDSTVYVPVERIHKIHKYIGDTRNVRIDRIHSG 361 >UniRef50_C5CIP9 Transcription-repair coupling factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIP9_KOSOT Length = 1018 Score = 710 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 281/700 (40%), Positives = 433/700 (61%), Gaps = 19/700 (2%) Query: 452 ERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLML 511 + + + P + + +EL G VVH+E+G+G++ G+ + T EYL + Sbjct: 329 KATRKNLPRKQEKYVPKAPVFDWSELEEGDFVVHIEYGIGKFLGIRKINGVLGTREYLTI 388 Query: 512 TYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDI 571 Y +K+YVP+ L + +Y G + N L+ L G+AW + +++ ++V++ EL + Sbjct: 389 EYREGSKIYVPIERLDRVHKYVGDTD-NIQLNSLRGNAWKKRKKRVEKEVKERIKELALL 447 Query: 572 YAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVG 631 Y R G + K D F SFP T DQA+AI VL D+ MDRLV GD G Sbjct: 448 YGTREHLRGLSLKGDPTLEDAFKRSFPHLETEDQAKAIEEVLDDLADEKPMDRLVSGDAG 507 Query: 632 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKE 691 +GKTEVA+RAAF AV + KQV++LVPTT+LA+QHY+ F++R + V ++++ R+R+ KE Sbjct: 508 YGKTEVALRAAFRAVVSGKQVSILVPTTVLARQHYETFKNRLEPFGVNVDILDRYRTPKE 567 Query: 692 QTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDI 751 + +IL E+ GKID++IGTH LL DV+F DLGL+I+DEE FGV KE +K +R V++ Sbjct: 568 RQKILRELKNGKIDVIIGTHSLLSKDVRFADLGLVIIDEEQLFGVMQKEHLKKLRLEVNV 627 Query: 752 LTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQ 811 LT++ATPIPRTL MA+SG+R+LS+IATPP R +T+V + ++R A+LREI RGGQ Sbjct: 628 LTMSATPIPRTLYMALSGLRELSMIATPPIGRTMPETYVGPVNDRLIRTAVLREINRGGQ 687 Query: 812 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTII 871 V Y++N V + K ++ L+PE I + HGQM +R E+ + DF+ + +L+CTTII Sbjct: 688 VIYVHNRVNELNKLENKIRTLLPEVEIGVAHGQMPKRLFEKNVGDFYSGKLQMLLCTTII 747 Query: 872 ETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLE 931 E+G+DIP ANT+I++ + +GLAQL+QLRGRVGRS +A+A+ L +PK +T A++RL+ Sbjct: 748 ESGVDIPNANTLIVDDSQRYGLAQLYQLRGRVGRSTRRAFAYFLY-NPKRLTPKAKERLK 806 Query: 932 AIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGRE 991 A+ G+G LA D+EIRG GELLG+EQ G++ +IG LY E++E AV + +E Sbjct: 807 ALREFSGPGSGMKLAIKDMEIRGFGELLGKEQHGNISSIGLYLYKEMVERAVAEARGIKE 866 Query: 992 PSLEDLTSQQTEV-ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRF 1050 + TE+ + ++P+++I D R+ Y+RIA +++ E+ EI+ EL DRF Sbjct: 867 LEPLEEKFIDTELHNIPYDMVIPEEYINDSFERMKIYRRIAMSRSVEEITEIEEELKDRF 926 Query: 1051 GLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQH 1110 G LPD R+LLD AR+R A L I+ F E + + A +IGL + ++ Sbjct: 927 GTLPDEVRSLLDAARIRIAAYNLSIK------------FIEYDPHSEAVIIGLKESGKKN 974 Query: 1111 YRLDGPTRLKFIQDLSERKTRIEWVRQ--FMRELEENAIA 1148 ++ L+ I + E K + +++ + ++ + Sbjct: 975 VKIF--DGLRNIFNEKESKVILYNIKEEKLLDTIKAIFLG 1012 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 71/404 (17%), Positives = 149/404 (36%), Gaps = 12/404 (2%) Query: 29 TLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDII 88 V E ER V+I P + R S D+ + + P++ + Sbjct: 14 LWVIENLERIPESSVIIFPSERELQRFLSFHSPSGDEGIFF--SHDVFPFEDVRVSAYVR 71 Query: 89 SSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSA 148 + R+S L L + ++ ++++ P + G ++ +L Sbjct: 72 NHRMSCLSNLQNKNIKRIYTSLDAILRKTLPPEAMKGSTKKIRIDDPFGFHP--DKLVEM 129 Query: 149 GYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEA 208 GY V V+E G+++ +G ++D+F GS LPYRL FDD ++ +++FD +QR+++ + Sbjct: 130 GYERVFTVVEPGQFSWKGEVVDIFVPGSVLPYRLILFDDIVEEIKLFDPGNQRSVKHISE 189 Query: 209 INLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEP 268 I + PA E T + + L + + + + I + ++ LF+ + Sbjct: 190 IEIFPAGEVLTIEENVSLAKLRIENAEKATGKRFSISPLNWQR-----MDTVVGLFYRQQ 244 Query: 269 LPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELF 328 L Y + + D E + F+ E + + + L+ Sbjct: 245 -AWLGDYLGDDCFFLFV-DPEEGLKDFELRERETLEILSNKEVEKFIYRRFGTFSPTLLY 302 Query: 329 SELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFS 388 S K + + E + +L + ++ P + + E +G V Sbjct: 303 SVKKYGLISKREVETFEWTSLKYEDVKATRKNLPRKQEKYVPKAPVFDWSELEEGDFVVH 362 Query: 389 VESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEH 432 +E G + LG + + + ++ Y+ I + Sbjct: 363 IEY-GIGKFLGIRKINGVLGTREYLTIEYREGSKIYVPIERLDR 405 >UniRef50_A7HNV8 DEAD/DEAH box helicase domain protein n=3 Tax=Thermotogaceae RepID=A7HNV8_FERNB Length = 923 Score = 710 bits (1833), Expect = 0.0, Method: Composition-based stats. Identities = 267/665 (40%), Positives = 394/665 (59%), Gaps = 20/665 (3%) Query: 436 DTVRNLALICESDLL--------GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLE 487 D + +I D+L + + + + P + + EL +G VVH Sbjct: 232 DEYKKFGIISYEDILSKAQEIELKQPITQEKLLIEEEYIPSAPVLSEDELQVGDLVVHKR 291 Query: 488 HGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGG 547 +G+ R+ + +E E+L+L +A+ LYVP+ + LI +Y G + N L L Sbjct: 292 YGIARFTEIKKVETISGAKEFLVLNFADST-LYVPIERIDLIDKYIG-DDVNVKLDSLKK 349 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607 WS+ KA + + ++L I+ R G A D E F +FP+ T DQ + Sbjct: 350 GTWSKKVSKAKRNIETIVRDMLLIHYIRNNTTGVALPGDSELESEFAKTFPYIETEDQLK 409 Query: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667 AI V D+ MDRL+ GD G+GKTEVA+RA F A+ + KQ A+L PTT+LA+QHY+ Sbjct: 410 AIQDVFEDLVSGKPMDRLLVGDAGYGKTEVAIRAIFRAIVSGKQAALLAPTTVLARQHYE 469 Query: 668 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727 N +RF + +R+ ++ RF + KE+ +IL +V GKID+LIGTH +L +V F DLGL++ Sbjct: 470 NIAERFKPFGIRVALLDRFVTKKEREEILRDVKNGKIDLLIGTHSILN-NVVFADLGLVV 528 Query: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787 +DEE +FGV KE+ K +R NV +L+++ATPIPRTL+MA+S +++ S I TPP R V+ Sbjct: 529 IDEEQKFGVEQKEKFKKLRVNVHVLSMSATPIPRTLHMALSELKEFSEIKTPPFGRKEVQ 588 Query: 788 TFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 847 + +D +VR AILREI RGGQV Y++N V I ERL EL+PE I IGHGQ + Sbjct: 589 VHIGPFDDRIVRIAILREINRGGQVIYVHNRVNTIYDVYERLKELLPEVSIVIGHGQQSK 648 Query: 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 EL+R ++ F H + +VL+CTTI+E G+D+P ANT+I++ A +GLAQL+QLRGRVGRS Sbjct: 649 SELKRAIDMFFHGKADVLLCTTIVENGVDVPNANTLIVDDAHRYGLAQLYQLRGRVGRSD 708 Query: 908 HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSM 967 ++A+ HPK + +RL AI S G+G +A D+EIRG G + G EQ G + Sbjct: 709 KISFAYFF--HPKHVNDKVLERLYAIKSYVGPGSGLKIAMRDMEIRGIGAVFGLEQHGYI 766 Query: 968 ETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVE-LRMPSLLPDDFIPDVNTRLSF 1026 IG + Y+ELL+ + K E ++ TE+E + ++P+ +I D R+ F Sbjct: 767 NDIGLNYYLELLDETIKESKG------ELISKVDTELEGIPGSIIIPEAYIYDPFERMRF 820 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGV 1086 Y+RIASA + +EL +IK+EL DRFG +P+ LL LR K+G++K + V Sbjct: 821 YRRIASATSIDELMDIKLELEDRFGKIPNSVENLLKYGMLRVLLWKMGVKKATIGDSTIV 880 Query: 1087 IEFAE 1091 +EF Sbjct: 881 VEFKN 885 Score = 146 bits (369), Expect = 4e-33, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 80/158 (50%), Gaps = 6/158 (3%) Query: 65 QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLH 124 + + D++ LPY++ P + S R+ LY L + I + L+ V S Sbjct: 20 EGYYYIPDYDVLPYENLRPSWYVRSRRIYALY-LAVQGKLKGIATLRALLHYVMKPSEFK 78 Query: 125 GHALVMKKGQRLS-RDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLD 183 + +K G LS + L +L GY V V E G ++ RG ++D + +P R++ Sbjct: 79 KYIYHLKPGDELSSPEELFAKL---GYERVFNVREGGTFSIRGEIIDYLGPDN-MPVRIE 134 Query: 184 FFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDK 221 + + I+ +R FD+ +QR+ E++E+ LLPA EF ++ Sbjct: 135 LYGNLIEEIRRFDLKTQRSQEKLESALLLPAREFVVEE 172 >UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaerobacter ethanolicus CCSD1 RepID=C7IS11_THEET Length = 765 Score = 706 bits (1822), Expect = 0.0, Method: Composition-based stats. Identities = 235/744 (31%), Positives = 383/744 (51%), Gaps = 25/744 (3%) Query: 18 LLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLP 77 L LT + A + I + V++IAPD A ++++++ F E L Sbjct: 27 LAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLYSFNFGNASLFPKREALF 86 Query: 78 YDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLS 137 Y + Q+++S RL + +L ++ ++ + ++ P + V K G ++ Sbjct: 87 YKIDAASQEVVSQRLQVIKKLSEESPHAVVTSIDAAVGKLIPMDLFKKYQFVFKLGVTVN 146 Query: 138 RDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDV 197 + + L + GY V V G+++ RG ++D+F E PYR++ FDDEIDS+R FDV Sbjct: 147 LEEVIKSLVTMGYERVQMVEGKGQFSVRGGIIDVFSPTEEYPYRIELFDDEIDSIRTFDV 206 Query: 198 DSQRTLEEVEAINLLPAHEFPTDKAAIE----------------LFRSQWRDTFEVKRDP 241 +QR+LE ++ IN+ PA EF I+ + +S+ ++++ Sbjct: 207 ITQRSLENIDKINIFPATEFIAGAEHIKKGISAVSNYLNSYLSKIKKSKSGIAEKLQQKF 266 Query: 242 EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLA 301 E I +++++ I F+ + + + Y + +++ Sbjct: 267 EEIMEEITESKRVENIYELIDYFYDD-VYSIVDYMGEDAVIILDESSRIKQRVNNLQMEF 325 Query: 302 RFENRGVDPMRPLLPPQS-LWLRVDELFSELKNWPRVQLKTEHLPTKAANAN--LGFQKL 358 + + +LP QS L+ +E+ +KN + + T P + F Sbjct: 326 NENFKALLEKGEVLPEQSKLFFDYEEILKRVKNNFLLIMNTLAKPGNELQPQTIVNFVSR 385 Query: 359 PDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEA 418 +D L K+ + V+ ++ R L + L I I + Sbjct: 386 SMHHFHGNMDILVDDL-KYYKNAGYKVLLLSGNQERARILKDTLDSFNIDTVVIKDSEYD 444 Query: 419 SDRGRYLMI-GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAEL 477 +G+ ++ + GF A+I + ++ G+ R+R + + I++ EL Sbjct: 445 IQKGQVVIYPASVSKGFEYVDAKFAVISDGEIFGQTKRRKRTVKIKNADK---IKSFTEL 501 Query: 478 HIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAE 537 IG VVH+ +G+G+Y G+ ++ GI +YL + YA L+VPV L L+ +Y G + Sbjct: 502 EIGSYVVHVNYGIGKYEGIEKIKVDGIVRDYLKIIYAGGDTLFVPVEQLDLVQKYVGPTD 561 Query: 538 ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSF 597 L+KLGG W RA++KA + V D+A +L+ +YA+R +G AF D + F + F Sbjct: 562 NPPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAFSPDTPWQKEFEEQF 621 Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 P+E T DQ + I + DM + MDRL+CGDVG+GKTEVA+RAAF AV + KQVA L P Sbjct: 622 PYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTEVALRAAFKAVADGKQVAFLCP 681 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 TT+LA QHY NF +RF +PV+IEM+SRFR+ KEQ++I+ E+AEG IDI++GTH+LLQ+D Sbjct: 682 TTILAYQHYTNFIERFKEFPVKIEMLSRFRTPKEQSKIIKELAEGNIDIIVGTHRLLQND 741 Query: 718 VKFKDLGLLIVDEEHRFGVRHKER 741 +KFKDLGLLI+DEE RFGV HKE+ Sbjct: 742 IKFKDLGLLIIDEEQRFGVVHKEK 765 >UniRef50_Q8RH90 Transcription-repair coupling factor n=12 Tax=Fusobacterium RepID=Q8RH90_FUSNN Length = 981 Score = 704 bits (1818), Expect = 0.0, Method: Composition-based stats. Identities = 275/674 (40%), Positives = 421/674 (62%), Gaps = 23/674 (3%) Query: 442 ALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEA 501 ++ + ++ G RV R R + + + + E+ V+H GVG + G+ +E Sbjct: 305 LILTDREIKGIRVKRERVEKK-----ALRYKTVDEIKEQDYVIHENFGVGIFLGLENIEG 359 Query: 502 GGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKV 561 +YL + YA++ KL+VPV S++ I ++ ++ ++KLG + R + K +E + Sbjct: 360 ----QDYLKIKYADEDKLFVPVDSINKIEKFINISDVIPEIYKLGRKGFKRKKAKLSEDI 415 Query: 562 RDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621 A E++ I A+R GF F D + F ++FPF TP Q++AI V DM Sbjct: 416 EIFAKEIIKIQAKRNLGNGFKFSKDTVMQEEFEETFPFTETPAQSKAIEDVKRDMESGKV 475 Query: 622 MDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIE 681 MDRL+CGDVGFGKTEVA+RA F AV + KQV +LVPTT+LA+QHY+ F +RF N+PV IE Sbjct: 476 MDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVPTTVLAEQHYERFSERFKNYPVHIE 535 Query: 682 MISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKER 741 ++SR +S KEQT+ L + G D++IGTH+LL D+KFKD+GLLI+DEE +FGV+ KE+ Sbjct: 536 ILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDDIKFKDVGLLIIDEEQKFGVKAKEK 595 Query: 742 IKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREA 801 +K ++ ++D+LTLTATPIPRTLN+++ G+RDLS+I T P R + T + + ++E Sbjct: 596 LKKIKGDIDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIHTEYIDNNKNFIKEI 655 Query: 802 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEA-RIAIGHGQMRERELERVMNDFHHQ 860 IL EI R GQV+Y++N V+ ++ + + EL+PE +++ HGQM R++++ + DF + Sbjct: 656 ILSEISREGQVFYIFNSVKRMESKVKEIRELLPEYIKVSYIHGQMLPRDIKKNIQDFENG 715 Query: 861 RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 920 +VLV TTIIE GIDI ANT+IIE + GL+Q++QLRGR+GRS ++Y ++LT K Sbjct: 716 NVDVLVATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGRIGRSTKKSYCYMLTNENK 775 Query: 921 AMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLE 980 T +A+KR E+I ++L G LA D +IRG GE+LGE+Q G++ET G++LYM++L Sbjct: 776 --TKNAKKREESIREFDNLT-GIDLAMEDSKIRGVGEILGEKQHGAVETFGYNLYMKMLN 832 Query: 981 NAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELE 1040 + LK E L+++ + P LPD++I + N ++ YKR + K +ELE Sbjct: 833 EEILKLKGEAEEELDEVDVEL-----NFPRFLPDNYI-EKNEKVKIYKRALALKNLDELE 886 Query: 1041 EIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG---NEKGGVIEFAEKNHVNP 1097 + EL DRFG + A+ D ++R A+ LGI ++ N+ +I F EK +N Sbjct: 887 NLYNELEDRFGKIKSEAKGFFDFIKIRIIARDLGITTIKQDKENKDRILINFNEK-KINV 945 Query: 1098 AWLIGLLQKQPQHY 1111 +I LL + Y Sbjct: 946 DKIIYLLSNKKIMY 959 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 39/225 (17%), Positives = 98/225 (43%), Gaps = 14/225 (6%) Query: 35 AERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLST 94 + +V I +N + F ++ + + +++ Sbjct: 13 LKNKKNNLVYICSSNRNIDDYFFVLKDFYKGKILRI--------KKENEARELKKYNYDL 64 Query: 95 LYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVD 154 L + + ++ ++++ ++ ++ + +++ ++KG+ L+ L +L A + Sbjct: 65 LELINSNEKFIILISLDYFLEDY----YSEANSIFIEKGKNLNIKDLEEKLIDADFEKTY 120 Query: 155 QVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPA 214 V + EY+ RG +LD+F + + P R++FF +E+D + FD++SQ ++E+ ++I L Sbjct: 121 MVAQRKEYSIRGDILDIFNINQDNPVRIEFFGNEVDRITYFDINSQLSIEKKDSIELY-- 178 Query: 215 HEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEY 259 + +K I S ++ E + I Q K + ++ Sbjct: 179 IDNNKNKKDIFSLMSMNKNKIEYYYENNDILQAKIKRLINENLDR 223 >UniRef50_A8ERW1 Transcription-repair coupling factor n=13 Tax=Epsilonproteobacteria RepID=A8ERW1_ARCB4 Length = 995 Score = 703 bits (1815), Expect = 0.0, Method: Composition-based stats. Identities = 240/699 (34%), Positives = 403/699 (57%), Gaps = 12/699 (1%) Query: 396 EALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVA 455 + E ++ I+ EA +G L + +V L L+ + +++ Sbjct: 286 ANVKEFISFHNDKKITIISGSEAKVKGYDLDLSDKNINYVFENYILNLVSDDEVI----- 340 Query: 456 RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAN 515 + + L EL VVH ++G+G+Y G+ + G +++++ Y Sbjct: 341 ISLNKEVKKRRKKKVKLVLDELQYNDFVVHEKYGIGQYKGIEPVTVMGAKRDFVIIQYQG 400 Query: 516 DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR 575 + KL VPV +L LI RY A + KLG ++++ ++K +K+ +A +++ + A R Sbjct: 401 EDKLLVPVENLDLIDRYVADGNSYAVVDKLGKGSFAKLKEKVKDKLFAIANDIIKLAAAR 460 Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 G D++ + F S FE T DQ ++I +L D+ MDRL+ GDVGFGKT Sbjct: 461 ELVNGIKINTDKKVLEDFQKSAGFEYTKDQKRSIKEILDDLSSGRVMDRLLSGDVGFGKT 520 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 EVAM A + + Q + PTTLLA QHY + + R ++ +R+ + +AKE+T I Sbjct: 521 EVAMNALLAVILDGYQTIFVCPTTLLATQHYHSIQKRLESFGIRVAKLDGKTTAKEKTSI 580 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 + I ++IGTH LL D+K +L L+I+DEEH+FGV+ KE++K +R +V I +++ Sbjct: 581 KKGLENADIKLVIGTHSLL--DIKTSNLALVIIDEEHKFGVKQKEKLKQLREDVHIFSMS 638 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYL 815 ATPIPRTLN+A+S ++ +S + TPP+ RL V+T+V+EY +++E ILRE RGGQ++Y+ Sbjct: 639 ATPIPRTLNLALSKLKGMSSLLTPPSERLGVRTYVKEYSEKLIKEIILREKRRGGQLFYV 698 Query: 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 +N++ +I+ + + +VP +I I H Q++ + E+++ F ++ F++L+ T+I+E+GI Sbjct: 699 HNNIASIEAKKKDIEAIVPNIKIDIIHSQIKPEQAEKIIEAFENKEFDILLATSIVESGI 758 Query: 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 +P AN+III+ AD FG+A LHQLRGRVGRS+ + Y + + K++T DA KRL A+ S Sbjct: 759 HLPNANSIIIDGADRFGIADLHQLRGRVGRSNKEGYCYYVVEDKKSITDDAVKRLVALES 818 Query: 936 LEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLE 995 LG+G ALA DLEIRG G ++GE QSG ++ IG+ LY+++LE+ + L E Sbjct: 819 NSYLGSGTALAHQDLEIRGGGNIIGEAQSGHIKQIGYGLYLKMLEDTLATLSG-----DE 873 Query: 996 DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPD 1055 + +++L + + + D++I + RL Y+R++ A E+ I+ E+ DRFG Sbjct: 874 KNEKKTVDIKLAISAYISDEYISEDRVRLELYRRLSKASDIQEVYSIEEEMEDRFGKPDI 933 Query: 1056 PARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH 1094 + +++ ++ A KLGI+ + E A+ Sbjct: 934 VTKQFIELIIIKILALKLGIQTISSYEMNITFTKADDTK 972 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 73/348 (20%), Positives = 135/348 (38%), Gaps = 32/348 (9%) Query: 43 VLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPT-- 100 +LI D + A ++ +I + LAD+ D + + TL + Sbjct: 22 LLIVNDDRQA-QIASDIVSYLGFKPFLLADFRANFGDDLLSFSEELHEITKTLGDFYSYK 80 Query: 101 MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHG 160 Q +LI P+ T+ + + RL+ + L+++L + GY VD V G Sbjct: 81 KQDKILISPIRTISYPLPKEKCFESFTINFA--DRLNLEELKSKLYNWGYYFVDIVTSEG 138 Query: 161 EYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR-TLEEVEAINLLPAHEFPT 219 E + RG +LD+ P+GS+ YR+ FDDE++S+R FD++ Q+ + EE+E+ ++ PA Sbjct: 139 EVSLRGDILDICPLGSDFGYRVSLFDDEVESIRKFDIEDQKSSKEEIESFSINPAF-LAL 197 Query: 220 DKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFP-A 278 D+A E Q Q +S I + ++ L L Y P Sbjct: 198 DEATFEEINEQ--------------IQTISSDAFIKDI-HSLGFWY---LGELGEYLPQK 239 Query: 279 NTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQ 338 + + L+ E + FE + V+ + LL PQ + + + + Sbjct: 240 MSSFITQDALDELEEVYV------FEEKRVNKDKFLLTPQIYNSKNYQEINPANVKEFIS 293 Query: 339 LKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVV 386 + T + + + + L + D ++ Sbjct: 294 FHNDKKITIISGSEAKVKGYDLDLSDKNINYVFENYILNLVSDDEVII 341 >UniRef50_B2V9E1 DEAD/DEAH box helicase domain protein n=2 Tax=Sulfurihydrogenibium RepID=B2V9E1_SULSY Length = 938 Score = 702 bits (1811), Expect = 0.0, Method: Composition-based stats. Identities = 254/660 (38%), Positives = 408/660 (61%), Gaps = 15/660 (2%) Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 ++ L G ++H + G+G Y G+ T E G ++++L Y+ K+YV I +Y Sbjct: 286 DVEPLKEGDYIIHEDFGIGIYRGIETREIRGKVYDFMILEYSGGEKVYVSYLHFDKIHKY 345 Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 + + K+GG +W ++K E ++++A LL+IY++R K D E Sbjct: 346 K--TDSIIQIDKIGGTSWRNLKKKVKESLKNIAKNLLEIYSKRQNIYRPPLKTDDELISK 403 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F FPF TPDQ +AI + SD +P M+RL+CGDVGFGKTEVA+R F++V N Q Sbjct: 404 FEREFPFVETPDQIKAIKDIKSDFLKPKPMERLICGDVGFGKTEVAIRGIFISVINGYQA 463 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 +LVPTT+LA QHY ++R + + ++ +SR +S KE + EGKID+L+ THK Sbjct: 464 LLLVPTTVLAYQHYKKLKERLEPYGIIVKNLSRLKSKKENDNTIKAFEEGKIDVLVATHK 523 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 +L +++ F L LL++DEEHRFGV+ KE+I+ +R +VD L LTATPIPRTLNMA+SG++D Sbjct: 524 ILHTNLSFNKLELLVIDEEHRFGVKAKEKIRQIRESVDTLYLTATPIPRTLNMALSGLKD 583 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 832 +S++ TPP R +KT+V +D ++++AI EI R GQV+YL+N +E I++ A+ L L Sbjct: 584 ISVLNTPPEGRYEIKTYVSNFDEELIKKAIEFEIDRNGQVFYLHNRIETIKETADFLKNL 643 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 V +A++ HG+M+ E+E+ + DF + NVL+ T+IIETGIDIPTANT+I++RAD FG Sbjct: 644 VKKAKVDFIHGKMKPSEIEKKIIDFLEGKTNVLISTSIIETGIDIPTANTLIVDRADLFG 703 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 LAQL+ LRGRVGR + QAY +L+ P K +T DA++R++ + L G+G ++ D++I Sbjct: 704 LAQLYHLRGRVGRGNIQAYCYLIVP--KEITKDAKRRIDTLLKLTRPGSGLKVSIEDMQI 761 Query: 953 RGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLL 1012 RG G +LG EQSG ++++GF Y++LL+ A++ + +E + E+E+ + Sbjct: 762 RGPGNILGVEQSGFIKSLGFDYYVKLLKEAINEERGEKEF--------EAEIEIDFDYYI 813 Query: 1013 PDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 P DFI D RL+ Y ++ A+ E+E+++ L + + LP L I+ +++ + Sbjct: 814 PQDFIKDPTERLNIYMAVSKAEDYEEIEKLRKYLKEFYNDLPKAFDLYLVISEIKKLLSR 873 Query: 1073 LGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRI 1132 L I+KL ++ ++ NP ++ L++ +++ + ++ L E K +I Sbjct: 874 LKIKKLHMKSDLAYLQLSD--QTNPEVILKLIENL-NPVKIEKEKIIFQVESLEELKEKI 930 Score = 96.1 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 46/222 (20%), Positives = 92/222 (41%), Gaps = 12/222 (5%) Query: 34 IAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISS--R 91 + + P+ LI ++A + + D D E + + S D++S R Sbjct: 14 LLIQKEKPLFLITDSEKSAKESFLNLKAYKD---FFKKDLEIIHFPSSQEKLDLLSQIER 70 Query: 92 LSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYR 151 +Y++ + +L+ + L +V + +KK L+R+ L +L GY Sbjct: 71 NYAIYKILAGKNWILVFSKDALNVKVRTKENFLKDIINIKKSGELNREFLIEKLYKLGYI 130 Query: 152 HVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINL 211 + GE++ RG L + + +DFF D I+++ F T +E+E I++ Sbjct: 131 REEFPENEGEFSVRGGFLSINIPKVGI-VDIDFFGDTIENI--FLKSKILTRKEIEEISI 187 Query: 212 LPAHEFPTDKAAIELFRSQ----WRDTFEVKRDPEHIYQQVS 249 LP ++F +F + +RD + IY+ ++ Sbjct: 188 LPLYDFNIKSQTPLIFEDEESTFFRDYLKNDIYTLDIYEDLN 229 >UniRef50_B1LBI8 DEAD/DEAH box helicase domain protein n=5 Tax=Thermotogaceae RepID=B1LBI8_THESQ Length = 893 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 265/636 (41%), Positives = 403/636 (63%), Gaps = 10/636 (1%) Query: 461 SRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLY 520 +R I ++ E+ G VVH EHG+ + G+ L+ +YL L Y + A LY Sbjct: 234 TRIEKKESLPILDVDEIEEGGLVVHREHGIAIFEGVVRLKGVLGERDYLKLKYED-AVLY 292 Query: 521 VPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEG 580 VP+ + + +Y G L ++ W + +K E + EL+++Y +R +G Sbjct: 293 VPIEKIDRVHKYIG-DPSQVKLDRMNRGKWKQTLKKVREDIEKKIRELVELYMKRQEAQG 351 Query: 581 FAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMR 640 + D E + F +SFP+ TPDQ Q+I V+SD+ MDRL+CGD G GKTEVA+R Sbjct: 352 LSLPGDPELEEKFAESFPYIETPDQQQSIEEVMSDLASEKPMDRLLCGDAGVGKTEVALR 411 Query: 641 AAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA 700 AAF AV + KQVAVLVPTT+LA+QHY+NF++R + V++E++ R+A+E+ +I+ ++ Sbjct: 412 AAFRAVVSGKQVAVLVPTTVLARQHYENFKERMETFGVKVELLDSSRTAREKKEIIEKLK 471 Query: 701 EGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIP 760 +G+IDI+IGTH LL ++F DLGL+I+DEE +FGV KER K +R +V++LTL+ATPIP Sbjct: 472 KGEIDIIIGTHSLLNERIEFSDLGLVIIDEEQKFGVEQKERFKKLRLSVNVLTLSATPIP 531 Query: 761 RTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVE 820 RTL+MA+SGM+D S+I +PP R V +V EY +V+ A++REI RGGQV Y++N VE Sbjct: 532 RTLHMALSGMKDFSVINSPPPGRKPVYVYVAEYSDDLVKGAVIREINRGGQVIYVHNRVE 591 Query: 821 NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880 + + E+L + PE IA+ HG+M R +ER++++F+ +VL+CTTIIE G+DIP A Sbjct: 592 ELPEVFEKLKRMFPELEIAVAHGKMSRRAMERIVHEFYRGNIDVLLCTTIIENGVDIPNA 651 Query: 881 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLG 940 NT+I++ A +GL+QL+QLRGRVGRS +A+A+ L P + A +RL+ + S G Sbjct: 652 NTLIVDDAHRYGLSQLYQLRGRVGRSDRRAFAYFLYPKGTPRS--ALERLKVLKSYTGFG 709 Query: 941 AGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ 1000 +G +A D+E+RG G++LG EQ G++ ++G LY E+L+ + K R +E S Sbjct: 710 SGLQIALKDMELRGVGDVLGLEQHGNVVSVGLKLYNEILKETITRFKERR---IEKKHSV 766 Query: 1001 QTEVELRMPS--LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPAR 1058 E+E P +P+D++ + RL Y+R+AS+ E +LEEI E+ DRFG P+ + Sbjct: 767 NVEIE-NPPGRFFIPEDYVQNPVERLRLYRRLASSLDEEDLEEILEEMRDRFGEPPEEVK 825 Query: 1059 TLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH 1094 L+D RLR +A KLG++K+ + I + Sbjct: 826 LLVDYFRLRIRASKLGVKKIRFDHSMVEIFPNRDSP 861 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 44/200 (22%), Positives = 91/200 (45%), Gaps = 2/200 (1%) Query: 65 QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLH 124 + + + LP + +I R+ L++L + + + L ++V FL Sbjct: 16 EGYIFYPSRDVLPLEDVVLSPEIKGKRIEILWRLLNGENIKIATTLKALTEKVFSPDFLR 75 Query: 125 GHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDF 184 ++L++ + +L+ +L GY V V GE+A RG ++D++ G++ P R++ Sbjct: 76 ENSLMITRSTKLTLSP--ERLVEMGYERVFTVQNVGEFAIRGDIIDIYSPGNDFPVRIEL 133 Query: 185 FDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHI 244 F DEI+ +R F VD+QR+ + + +LP + + ++ ++ R E + Sbjct: 134 FGDEIEEIRFFKVDTQRSFQSADKTLILPFVDLYGESTLLDFVKTDVRFICEDLQKVLDE 193 Query: 245 YQQVSKGTLPAGIEYWQPLF 264 Y++ K E + F Sbjct: 194 YRKFRKEMRDLLKERYNDFF 213 >UniRef50_D1B3F9 Transcription-repair coupling factor n=14 Tax=Campylobacterales RepID=D1B3F9_SULD5 Length = 989 Score = 677 bits (1748), Expect = 0.0, Method: Composition-based stats. Identities = 236/621 (38%), Positives = 383/621 (61%), Gaps = 7/621 (1%) Query: 474 LAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYA 533 L EL G VVH +G+G + G+T + G T +++++ Y D KL +PV +LH+I RY Sbjct: 351 LDELKNGDYVVHENYGIGIFKGLTQVSVLGATKDFVLIEYLGDDKLLLPVENLHVIDRYI 410 Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 G + + +LG ++ + + K E++ ++A+E++ I A+R EG + E+ Q F Sbjct: 411 GESGGLVSVDRLGKGSFQKLKAKTKERLLEIASEIIAIAAKREMVEGLNIAIENEELQAF 470 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 F T DQ + I+ +L D MDRL+ GDVGFGKTEVAM A F V Q Sbjct: 471 QADAGFMYTEDQKRVIDEILVDFKSGKMMDRLLSGDVGFGKTEVAMNAIFATVQKGFQAL 530 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 ++ PTTLL QH+ + RFA + +++ + RF +A ++ IL E+ G + + +GTH L Sbjct: 531 LIAPTTLLCAQHFKSLSHRFAKYNIKVAQLDRFTTAAQKQLILKELKSGALQVCVGTHSL 590 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 DV+ + L++VDEEH+FGV+ KE++K R NV IL+++ATPIPR+LNMA+S ++ Sbjct: 591 F--DVELFNPALVVVDEEHKFGVKQKEKLKNFRENVHILSMSATPIPRSLNMALSSIKQY 648 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 S + TPP+ R V+TFV+EYD V++EAILRE+ RGGQ+++++N + I+ + L ++ Sbjct: 649 SQLLTPPSDREDVRTFVKEYDEKVIKEAILREMRRGGQIFFVHNRIATIEAKRKELLSMM 708 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 P RI H ++ E+ M F + +++L+ T+IIE+GI IP NTI+I+ ADHFG+ Sbjct: 709 PNLRILTLHSEISASVTEKEMLRFEEKAYDLLLSTSIIESGIHIPNVNTIMIDAADHFGM 768 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 A LHQLRGRVGRS Q + + L ++++ A+KRL A+ S LG+G LA HDLEIR Sbjct: 769 ADLHQLRGRVGRSKRQGFCYFLVKEKESLSESAKKRLIALESNSYLGSGSILAYHDLEIR 828 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLP 1013 G G L+GE QSG ++ IG++LY+ +LE+A++AL + S++ +++L + + + Sbjct: 829 GGGNLVGEAQSGHLKNIGYALYLRMLEDAINALMGKT-----PVASREVDMKLSISAFIS 883 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKL 1073 D +I + RL Y+R++ + +E+ EI+ E++DRFG + P + L + ++ A + Sbjct: 884 DSYIAEDRVRLELYRRLSRCGSIHEVLEIEEEMLDRFGKMDVPTKQFLQLIEIKILATQH 943 Query: 1074 GIRKLEGNEKGGVIEFAEKNH 1094 I + + +++ ++ Sbjct: 944 HIVLVSNYGQMITLKYEDEKK 964 Score = 145 bits (367), Expect = 7e-33, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 103/227 (45%), Gaps = 28/227 (12%) Query: 7 YTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM 66 Y E LLG + G A L +E+A + G + PD++ D++ F ++M Sbjct: 7 YEFLQTKNECELLG-VKGDKEAFLASEVAL-YCGKKSYVLPDLR--ANYGDDLLSFHEEM 62 Query: 67 VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGH 126 V L +D+ S + +LI P+ TL+ + Sbjct: 63 VELLRVLYAFYHDASS--------------------KKILISPLRTLLTPLPKVELF--S 100 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 L + G RL + R Q+ GY VD V GE + RG ++D+FP S+ R+ FD Sbjct: 101 TLTLAFGMRLHLERFREQMFYWGYLAVDVVQGKGEISIRGDIIDIFPPNSDYALRISLFD 160 Query: 187 DEIDSLRVFDVDSQRTL-EEVEAINLLPAHEFPTDKAAIELFRSQWR 232 DE++S+R F+ +SQ++L +E+E L PA F D++ L + + Sbjct: 161 DEVESIRFFECESQKSLKDELEEWLLFPAL-FALDESRYALMQRRIE 206 >UniRef50_C3XFZ1 Transcription-repair coupling factor n=2 Tax=Campylobacterales RepID=C3XFZ1_9HELI Length = 1042 Score = 671 bits (1732), Expect = 0.0, Method: Composition-based stats. Identities = 295/1106 (26%), Positives = 494/1106 (44%), Gaps = 135/1106 (12%) Query: 17 RLLGELTGAACATLVAEIAERHAGPVVLIAPDMQ---NALRLHDEISQFT---------- 63 +L + ++ + + P +LI + L ++ + Sbjct: 16 EILTHVKISSLNQTLTNHTKNKNTPQILICSSEEILLAKEALCATLNLISMQKTKKEVKE 75 Query: 64 DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ-RGVLIVPVNTLMQRVCPHSF 122 + + L D P+DS + + L + +LI P +TLM + Sbjct: 76 STLPIVLPDIRLSPFDSTQSFYEEFHELFAKLALWYENDCKQILISPPHTLMAFMPSKEL 135 Query: 123 LHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRL 182 L H+ ++K + + +L GY HV+ V GE++ R Sbjct: 136 L--HSFCVRKSENIVVKDFIAKLIHYGYEHVEIVEMQGEFSHR----------------- 176 Query: 183 DFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPE 242 D ID +P+ EFP I LF ++ + + Sbjct: 177 ---GDIID-------------------IFIPSFEFPV---RISLFDTEIEEINFFNHET- 210 Query: 243 HIYQQVSKGTLPAGIEYWQPLF-FSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLA 301 Q+S+ + ++ + +F E L ++ + + Sbjct: 211 ----QLSQNEMIENLKIYPAIFSLDESQHTLLE-----------SRIKELDNTLECSINS 255 Query: 302 R-FENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 360 F L S L L N V +P N F L D Sbjct: 256 LGFWFLKDIGGLDFLKTYSHVFTPKALSEYLLNLEFV------MPEVLPETNTEFYILQD 309 Query: 361 -LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEAS 419 + + + L + L+ + +L + I + Sbjct: 310 SINFRDLEPLKLSQIHNTLKLNSNKDITIFSPTNA------MLKSYNLESLSIKTKQIIT 363 Query: 420 DRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHI 479 F I ++ L + + + +R + L L + Sbjct: 364 P-------------FYLN------ITSNEKLFLSLQKPQIMRKRKVK-----LELDALKV 399 Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G VVH E+G+G + + + G +++ + YAND +L +PV +L++I +Y + Sbjct: 400 GAYVVHSEYGIGIFEAIKQVSIMGGLKDFISIIYANDDRLLLPVENLNMIEQY-SAYDSV 458 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY----QLFCD 595 + KLG ++ + + EK+ +A E++ + AQR +G + + F Sbjct: 459 VRIDKLGKSSFLKLKDSIKEKLFAIANEIIRLQAQRTLAKGVKIELETPDQITAFNTFES 518 Query: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655 S F T DQ AI L D+ + MDRL+ GDVGFGKTEVAM F + N VL Sbjct: 519 SRGFTLTQDQTHAIQESLKDLKSGMIMDRLLNGDVGFGKTEVAMSLCFASALNDFNSIVL 578 Query: 656 VPTTLLAQQHYDNFRDRFANWPVR------IEMISRFRSAKEQTQILAEVAEGKIDILIG 709 VPTTLL QH+++F++R N + I I RF +A ++ I + I I++G Sbjct: 579 VPTTLLCNQHFESFKERLHNTKLPNGKILYIAKIDRFTTATQKRAIQENFKDN-IQIIVG 637 Query: 710 THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSG 769 TH L +++ ++LGL+++DEEH+FGV+ KE +K IL+++ATPIPRTLNMA S Sbjct: 638 THSLF--NLEIENLGLMVIDEEHKFGVKQKELLKQKSLTTHILSMSATPIPRTLNMAYSK 695 Query: 770 MRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 ++ +S + TPP + KTFV+ +++E ILRE+ RGGQV+Y++N++ I L Sbjct: 696 LKSISELKTPPFFKQESKTFVKVKQDSLIKEVILRELRRGGQVFYIFNNIAKITTIQSYL 755 Query: 830 AELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 +L+P+ RI I H Q+ ++ E+ M F + +++L+CT+I+E+GI +P ANTIII+ A Sbjct: 756 HDLLPQLRILILHSQINPKDTEKGMLAFLKKEYDLLLCTSIVESGIHLPNANTIIIDDAH 815 Query: 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHD 949 +FG+A LHQLRGRVGR H + +LLT + +T DA KRL ++ LG+G ALA HD Sbjct: 816 NFGIADLHQLRGRVGRGKHVGFCYLLT--NENITQDAAKRLLSLEKNSYLGSGAALAYHD 873 Query: 950 LEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMP 1009 LEIRG G LLGE QSG ++ +GF +Y+ +LE+ + +L + Q+ +++L + Sbjct: 874 LEIRGGGNLLGEAQSGHIKQVGFGMYVRMLEDTLQSLLQNEQQE------QKVDIKLSVS 927 Query: 1010 SLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQ 1069 + L + + RL Y+R++ K+E E+ EI+ E+ RFG L + L+I ++ Sbjct: 928 AFLNESLVSSERMRLDLYRRLSQVKSEFEVREIEGEIEQRFGRLDIYSLQFLEIIIIKTL 987 Query: 1070 AQKLGIRKLEGNEKGGVIEFAEKNHV 1095 A +LGI+ + + + + Sbjct: 988 ALQLGIKAISNAGYNISLIGHDDTRI 1013 >UniRef50_D1AW65 DEAD/DEAH box helicase domain protein n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AW65_STRM9 Length = 900 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 269/879 (30%), Positives = 454/879 (51%), Gaps = 51/879 (5%) Query: 220 DKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN 279 + + L + D V + + +KG L I +FF E Sbjct: 50 ESKYVNLSSYSFIDLVGVNIEILEFLNKNTKGILFLDINLALKIFFDE------------ 97 Query: 280 TLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDEL---FSELKNWPR 336 + + + + E + + L G +L +R D + S L N R Sbjct: 98 ---FKSKEFKVNEEYSRDEILKYLVENGYKKEYTVLNKGEFAIRGDIIDIYPSNLDNPIR 154 Query: 337 VQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRRE 396 + L + + + ++ L + + + + S+ S+G E Sbjct: 155 LDFFDTILENIKIFSTYDQRSIENIEEITVFGNVLSGMEREI-----VDMISIFSKGNIE 209 Query: 397 ALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVAR 456 E +++ ++++ D+ +++ + F + L+ E +R + Sbjct: 210 IFLENKEFLEVKLEQMLMFDKDNEK-------VLKERFNKLIEKGNLL-EVSRSKDRNYQ 261 Query: 457 R--RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA 514 + R N+ ++ G V+H+E G+G Y G + +YL + YA Sbjct: 262 DEIKSKRERIEKKGIKYSNINQILEGDYVIHVEFGIGIYMGAVNIN----DRDYLYIQYA 317 Query: 515 NDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQ 574 ++ KLY+PV L IS+Y L+ LG + R ++ E V A EL++I A+ Sbjct: 318 DNDKLYIPVEKLDRISKYMS-TGIAPKLYSLGTKGFKRREKRIREDVEKFAQELINIQAK 376 Query: 575 RAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGK 634 R D + F + F F T DQ +A+ + D+ MDR++ GDVG+GK Sbjct: 377 RKLVRKLPLIKDTLWQEEFEEKFSFNLTWDQQKAVEDIKHDLESGRLMDRILVGDVGYGK 436 Query: 635 TEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQ 694 TEVAMRAAF A++N Q A+L PTT+LA QH++ RF ++ + + +SR + K Sbjct: 437 TEVAMRAAFKAIENGYQCAILAPTTVLANQHFERCHKRFEDFGISVNNLSR-LTGKNTDD 495 Query: 695 ILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTL 754 +L + GKID++IGTH+LL DVKFK+LGLLI+DEE +FGV KE+IK + ++ +LTL Sbjct: 496 VLDGLKNGKIDLVIGTHRLLGDDVKFKNLGLLIIDEEQKFGVNAKEKIKKRKEDIHLLTL 555 Query: 755 TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYY 814 +ATPIPRTLN+A+ G+RD+S+I + P RL + T + D +++ IL+E+ R GQV+Y Sbjct: 556 SATPIPRTLNLALLGIRDISLIQSSPMDRLPIITQKIQED--EIKKVILKELSRDGQVFY 613 Query: 815 LYNDVENIQKAAERLAELVPE-ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 873 + N+V+ + + + L +L+P+ I HG++ RE+++ +NDF +F++L+ +TI+E Sbjct: 614 ITNNVKGMAEKQKSLKKLMPDFVNIEYIHGKLSPREIKQKINDFDEGKFDILIASTIVEN 673 Query: 874 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLL-TPHPKAMTTDAQKRLEA 932 GIDI AN+IIIE GL+Q++QLRGRVGR Q Y +LL + + + K LE Sbjct: 674 GIDITNANSIIIENYTSLGLSQIYQLRGRVGRGKRQGYCYLLDSEYKSKKGKEKDKSLEK 733 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP 992 I +E G G+ L+ DL IRGAGE+LGE+Q G+++ G+ LY+++L+N ++ LK + Sbjct: 734 IEGVE--GGGYLLSLEDLNIRGAGEILGEKQHGAIDMFGYDLYLKMLKNEINKLKGEKVR 791 Query: 993 SLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGL 1052 + TE++L +P+++I + + R+ YKR A + E+EL E+ E+ DRFG Sbjct: 792 EFK-----NTEIDLLNNGYIPEEYI-EKDERILIYKRYAEVQNESELNELTEEIRDRFGK 845 Query: 1053 LPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAE 1091 +P + + +++ + I K++ N+K ++ E Sbjct: 846 IPKQMQNFIYSIKIKLYMIENNIDKIKENDKEYILTLQE 884 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 93/207 (44%), Gaps = 12/207 (5%) Query: 41 PVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQ-DIISSRLSTLYQLP 99 +V+I+ N ++ + Q + +E+ + S D++ + L L Sbjct: 24 KMVVISSASNNLEYYYNILKQEGSE-------YESKYVNLSSYSFIDLVGVNIEILEFLN 76 Query: 100 TMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEH 159 +G+L + +N L ++ F + K + SRD + L GY+ V+ Sbjct: 77 KNTKGILFLDIN-LALKIFFDEF---KSKEFKVNEEYSRDEILKYLVENGYKKEYTVLNK 132 Query: 160 GEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT 219 GE+A RG ++D++P + P RLDFFD ++++++F QR++E +E I + Sbjct: 133 GEFAIRGDIIDIYPSNLDNPIRLDFFDTILENIKIFSTYDQRSIENIEEITVFGNVLSGM 192 Query: 220 DKAAIELFRSQWRDTFEVKRDPEHIYQ 246 ++ +++ + E+ + + + Sbjct: 193 EREIVDMISIFSKGNIEIFLENKEFLE 219 >UniRef50_Q4HTG2 Transcription-repair coupling factor n=2 Tax=Campylobacter RepID=Q4HTG2_CAMUP Length = 974 Score = 654 bits (1688), Expect = 0.0, Method: Composition-based stats. Identities = 267/844 (31%), Positives = 448/844 (53%), Gaps = 41/844 (4%) Query: 282 LVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKT 341 ++ G+ S F DT + +E +L+++ L Sbjct: 154 ILFFGEEIESIRYFDLDTQKSIPSELDKLEICPFLSHFSKSAYEEFEEKLESFESKAL-- 211 Query: 342 EHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVF--------SVESEG 393 +LGF + D + +++KF +F+ SV + Sbjct: 212 -----IKDINSLGFWCVDDFEDYLKLD--FKSIKKFDASFENVDFINARILPEASVYRDL 264 Query: 394 RREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGER 453 + + A I+ +EA + L + F + L +I +++ Sbjct: 265 QSIYNQDFFALHHSKKITILAQNEALFKQLELDMSNII--FKQSTLRLNVISSDEIILSL 322 Query: 454 VARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTY 513 + ++ +R N L EL IG +VH ++GVG++ G+ L G E++ L+Y Sbjct: 323 NKKDKKRQKRKAN-----LILDELKIGDFIVHEDYGVGKFLGLELLNISGAKKEFVALSY 377 Query: 514 ANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYA 573 N+ KL +PV +L++I +Y G L +LG + + ++K K+ +A++++ + A Sbjct: 378 QNNDKLLLPVENLYMIDKYLGVGGAIPLLDRLGKSTFIKLKEKLKTKLLALASQIIAMAA 437 Query: 574 QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFG 633 +RA + D E F F T DQ +A +L D MDRL+ GDVGFG Sbjct: 438 KRALIKPKKIMIDLEAQADFVQRAGFSYTEDQVKACEDILEDFKSSRVMDRLLSGDVGFG 497 Query: 634 KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT 693 KTEVAM A F + + V VPTTLL+ QHY + + RF + +++ + RF SAKE+ Sbjct: 498 KTEVAMNAIFPVLKSGFSVFFFVPTTLLSHQHYQSLKKRFKEFDLKVFKLDRFTSAKEKK 557 Query: 694 QILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILT 753 +L E+ +++GTH LL V+ +++ L+I+DEEH+FGV+ KE++K N +L+ Sbjct: 558 YLLEELKNNTPCVVVGTHALLS--VECENVALVIIDEEHKFGVKQKEKLKEFSQNSHLLS 615 Query: 754 LTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVY 813 ++ATPIPR+LN A+S ++ SI+ TPP RL +++FVRE + +++EAILRE+ RGGQ++ Sbjct: 616 MSATPIPRSLNQALSSIKSYSILQTPPEDRLDIRSFVRESEDALLKEAILRELRRGGQIF 675 Query: 814 YLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 873 Y++N + +I++ + L L + RI I H ++ + E M F ++ +++L+CT+I+E+ Sbjct: 676 YIHNHIASIKQCEKHLKSLFKDLRILILHSKIDAKTTEEEMLKFENKAYDLLLCTSIVES 735 Query: 874 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAI 933 GID+P NTIIIE+++ FG+A LHQLRGRVGRS+ Q Y + L ++ A KRL ++ Sbjct: 736 GIDLPNVNTIIIEKSERFGMADLHQLRGRVGRSNKQGYCYFLVEDKANLSEAALKRLVSL 795 Query: 934 ASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPS 993 S LGAG LA HDLEIRG G LLG +QSG +E IG+SLY+++LE+ ++AL Sbjct: 796 ESNSFLGAGSLLAYHDLEIRGGGNLLGLDQSGHIEQIGYSLYLKMLEDELNALSKN---- 851 Query: 994 LEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLL 1053 E + + E++L + + L + I + + RL Y+R++ + + L EI+ E+ DRFG L Sbjct: 852 -ESVCENKLELKLNINAFLNPELINEDSLRLELYRRLSKCEDSSRLYEIEAEIEDRFGKL 910 Query: 1054 PDPARTLLDIARLRQQAQKL---------GIRKLEGNEKGGVIEFAEKNHVNP-AWLIGL 1103 + L + R++ A I+ ++ N++ VI+ K+ + ++ Sbjct: 911 DLYTKQFLALIRIKILASGKFKAISNYMQNIQLIKINDEKEVIKAKSKDEDDILEAILVY 970 Query: 1104 LQKQ 1107 L+K Sbjct: 971 LRKS 974 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 47/193 (24%), Positives = 90/193 (46%), Gaps = 6/193 (3%) Query: 43 VLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQL-PTM 101 +L+ + + A L +S F L D+ D + L Sbjct: 17 LLLCENEKEADLLAQ-VSAFFGIKTFVLPDFRAEFGDDLRAFSKELFELCKVLNAYHKEN 75 Query: 102 QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGE 161 + +LI P+ ++++++ L G ++ K + + + L+ + GY VD V + GE Sbjct: 76 AQKILISPLASVLKKLPSKRHLQG--FILDKTKPFNVELLKDEFLRLGYEFVDMVQDKGE 133 Query: 162 YATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTL-EEVEAINLLPAHEFPTD 220 + RG +LD+F + E P R+ FF +EI+S+R FD+D+Q+++ E++ + + P Sbjct: 134 LSLRGEVLDIFCINEENPVRILFFGEEIESIRYFDLDTQKSIPSELDKLEICPFL-SHFS 192 Query: 221 KAAIELFRSQWRD 233 K+A E F + Sbjct: 193 KSAYEEFEEKLES 205 >UniRef50_A9S9T2 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S9T2_PHYPA Length = 792 Score = 651 bits (1679), Expect = 0.0, Method: Composition-based stats. Identities = 243/657 (36%), Positives = 370/657 (56%), Gaps = 24/657 (3%) Query: 451 GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGE--Y 508 G+ VA + ++PDT L G+ VVH GVG + G+ G T Y Sbjct: 91 GQGVAVDGEAFSYAVDPDT-------LSPGEYVVHKRVGVGCFIGIKYEVPAGKTKPAKY 143 Query: 509 LMLTYAND-AKLYVPVSSLHLISRY--AGGAEENAPLHKLGG-DAWSRARQKAAEKVRDV 564 + L YA+ AKL +S L+ RY G L KL W + K ++ + Sbjct: 144 IYLKYADGVAKLRAKQAS-RLLYRYFSPGDVGRAPVLSKLNDPGNWEKRVSKGKLAIQKL 202 Query: 565 AAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDM-CQPLAMD 623 ++++Y R + + + + F FP++ T DQ QAI V DM + MD Sbjct: 203 VVNMMELYIHRLKQTRPVYPKNSKLMDSFAAKFPYKETSDQVQAIADVERDMTERETPMD 262 Query: 624 RLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMI 683 RL+CGDVGFGKTEVA+RA FLA +Q +L PTT+LA+QHYD R RFA + +++ ++ Sbjct: 263 RLICGDVGFGKTEVALRALFLAASAGRQAMLLAPTTVLAKQHYDVIRQRFAGYDMKVALL 322 Query: 684 SRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIK 743 SRF+ E+ +++A +++G + I++GTH LL + V++ +LGLL+VDEE RFGVR KERI Sbjct: 323 SRFQKDGEKKEVIAGISDGSLSIVVGTHSLLGNQVRYHNLGLLVVDEEQRFGVRQKERIT 382 Query: 744 AMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAIL 803 +M+ +VD+LTL+ATPIPRTL +A+SG RD S+I TPPA R + T + E++ V++AI Sbjct: 383 SMKTSVDVLTLSATPIPRTLYLALSGFRDASLITTPPAERRPITTHLMEFNPEAVKKAID 442 Query: 804 REILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN 863 E+ RGGQV+Y+ V+ ++++ L P+ I + HGQ LE M F + Sbjct: 443 FELKRGGQVFYVVPRVKGMEESKAILESYFPDVGIGVAHGQQSATVLEESMEQFSEGTYL 502 Query: 864 VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMT 923 +L+CT+I+E+G+DI NTIIIE FGLAQL+QLRGRVGRS +A+A++ P + ++ Sbjct: 503 ILLCTSIVESGLDIRRVNTIIIEDVQLFGLAQLYQLRGRVGRSDREAHAYMFHPSKENLS 562 Query: 924 TDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAV 983 DA +RL A+ LG GF LA D+ IRG G + GE+QSG + IG LY+E+L + Sbjct: 563 DDALERLVALEDCCGLGQGFQLAERDMAIRGIGSVFGEKQSGDVAKIGVDLYLEMLFEGL 622 Query: 984 DALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKT--ENELEE 1041 + + P ++T ++ +++L + + +P D++ R + A N L + Sbjct: 623 SNVDLQKLP---EVTFEEVQLDLAVSTHIPGDYVTSAALRDKVLRDAEKAANNGMNALMQ 679 Query: 1042 IKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPA 1098 L + +G P LL +++ A LGI ++ K V+ + P Sbjct: 680 FTNRLRNEYGPEPPTVEMLLKTLYVKRLAADLGIHRIRTRGKTVVM----DTKMEPE 732 >UniRef50_B9GNF6 Predicted protein n=2 Tax=rosids RepID=B9GNF6_POPTR Length = 939 Score = 627 bits (1617), Expect = e-178, Method: Composition-based stats. Identities = 240/703 (34%), Positives = 363/703 (51%), Gaps = 68/703 (9%) Query: 449 LLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITG-- 506 L G+RVA+ ++P T L G VVH + G+GR+ G+ + G + Sbjct: 117 LKGDRVAKEGDVFSYKVDPYT-------LSSGDYVVHKKVGIGRFVGIKFDMSKGSSEAI 169 Query: 507 EYLMLTYAND-AKLYVPVSSLHLISRYAGGAEENAP--LHKL-GGDAWSRARQKAAEKVR 562 EY+ + YA+ AKL V +S ++ RY + P L KL AW R + K ++ Sbjct: 170 EYVFIEYADGMAKLPVKQAS-RMLYRYNLPNDTKKPRTLSKLSDNGAWERRKTKGKVAIQ 228 Query: 563 DVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDM-CQPLA 621 + +L+++Y R + + F FP+E TPDQ QA V+ D+ + Sbjct: 229 KMVVDLMELYLHRLKQRRPPY-PKTPAMVDFSAQFPYEPTPDQKQAFIDVMRDLTERETP 287 Query: 622 MDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRI 680 MDRL+CGDVGFGKTEVA+RA F V KQ VL PT +LA+QH+D +RF+ +P +++ Sbjct: 288 MDRLICGDVGFGKTEVALRAIFCVVSAGKQAMVLAPTIVLARQHFDVISERFSKYPHIKV 347 Query: 681 EMISRFR------SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH-- 732 ++SRF+ S E+ L G +DI++GTH LL S V + +LGLL+VDEE Sbjct: 348 ALLSRFQAYLLLQSKAEKEMYLEMTKHGHLDIIVGTHSLLGSRVVYNNLGLLVVDEEQTT 407 Query: 733 -------------------------RFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 RFGV+ KE+I + + +VD+LTLTATPIPRTL +A+ Sbjct: 408 NKRKGKGNFSINHDFANEKEKKESRRFGVKQKEKIASFKTSVDVLTLTATPIPRTLYLAL 467 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 +G RD S+I+TPP R+ +KT + Y + AI E+ RGGQV+Y+ ++ +++ + Sbjct: 468 TGFRDASLISTPPPERVPIKTHLSAYSKERLISAIKYELDRGGQVFYVLPRIKGLEEVKD 527 Query: 828 RLAELVPEARIAIGHGQMRERE-------------LERVMNDFHHQRFNVLVCTTIIETG 874 L + IA+ HGQ ++ LE M F +L+CT I+E+G Sbjct: 528 FLEQSFSNVEIAVAHGQHVTKKGNSFLLVKQYSKLLEDTMEQFAQGEIKILICTNIVESG 587 Query: 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIA 934 +DI ANTIII+ FGLAQL+QLRGRVGR+ +A+A L P +T A +RL A+ Sbjct: 588 LDIQNANTIIIQDVQLFGLAQLYQLRGRVGRADKEAHAHLFYPDKSMLTDQALERLAALE 647 Query: 935 SLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSL 994 ++LG GF LA D+ IRG G + GE+Q+G + +G + E+L + L E + Sbjct: 648 ECQELGRGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDFFFEMLFES---LSKVDEHRV 704 Query: 995 EDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTEN--ELEEIKVELIDRFGL 1052 + Q +V+L + LP D+I + + A + L + L ++G Sbjct: 705 ISVPYQSVQVDLNINPHLPSDYINSLENPMEIINEAEKAAETDIWSLMQFTENLRCQYGK 764 Query: 1053 LPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHV 1095 P LL +R+ A +GI ++ + K +E V Sbjct: 765 EPCSMEILLKKLYIRRMAADIGITRIYASGKMVGMETNMSKKV 807 >UniRef50_Q2R377 CarD-like transcriptional regulator family protein, expressed n=14 Tax=Magnoliophyta RepID=Q2R377_ORYSJ Length = 832 Score = 621 bits (1602), Expect = e-176, Method: Composition-based stats. Identities = 219/630 (34%), Positives = 357/630 (56%), Gaps = 15/630 (2%) Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 + EL G+ VVH + GVG++ ++ + +Y+ + YA+ + ++ RY Sbjct: 153 DPRELEAGEYVVHKKVGVGKFVCISAEDGL----DYVFIQYADAMAKLAVDQAARMLYRY 208 Query: 533 AGGAEENAP--LHKLGG-DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQ 589 E+ P L KL W + R K V+ + L+++Y QR ++ + Sbjct: 209 NLPHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKRPPY-PKPVG 267 Query: 590 YQLFCDSFPFETTPDQAQAINAVLSDM-CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 F FP+E TPDQ QA V D+ + MDRL+CGDVGFGKTEVAMRA F+ + Sbjct: 268 MDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISA 327 Query: 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 Q VL PT +LA+QHYD +RF+N+P +++ M S ++ +E+ +++ ++ G + I+ Sbjct: 328 GFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHII 387 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 +GTH +L + + +LGLL+VDEE +FGV+ KE+I + +A++D+LTL+ATPIPRTL +A+ Sbjct: 388 VGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLAL 447 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 +G RD S+++TPP R+AV+T+V + AI E+ RGGQV+Y+ ++ I + Sbjct: 448 TGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQ 507 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 L + +P+ +A+ HG+ + ++ M F +LVCT IIE+GIDIP ANT++++ Sbjct: 508 FLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQY 567 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 A+ FGLAQL+QLRGRVGRS + +A+L ++ A RL AI DLG GF +A Sbjct: 568 AELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAE 627 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR 1007 D+ IRG G L GE+QSG + +G L+ ++L D+L + L + + ++++ Sbjct: 628 KDMGIRGFGSLFGEQQSGDVANVGIDLFFDML---FDSLSKVDQFCLIPVPYKDVQLDIN 684 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTEN--ELEEIKVELIDRFGLLPDPARTLLDIAR 1065 + S L ++I + + A A ++ L + +L ++G P LL Sbjct: 685 ISSRLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKEPRDMELLLKKLY 744 Query: 1066 LRQQAQKLGIRKLEGNEKGGVIEFAEKNHV 1095 +R+ A LGI ++ + K +++ V Sbjct: 745 VRRMAADLGISRIYSSGKMIIMKTNMNKKV 774 >UniRef50_A4RX81 Predicted protein n=4 Tax=Mamiellales RepID=A4RX81_OSTLU Length = 754 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 234/687 (34%), Positives = 362/687 (52%), Gaps = 26/687 (3%) Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEA-----GGITGEYLMLTYANDAKLYVPVSSLHLISR 531 L G+ VVH ++G+G++ GM L G +L L Y + P +S L+ R Sbjct: 68 LVTGEYVVHRKYGIGQFLGMKVLAVESANEGTQNKPFLFLKYQDATAKISPEASRRLLYR 127 Query: 532 YAGGAE--ENAPLHKLGGDA-WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK-HDR 587 + + L+KL + W +K +R + + +Y QR + D Sbjct: 128 FCSPGGLVKPPKLNKLNDKSTWDLRERKTEATIRRLVVNQMVVYLQRLQCVREPYPLPDP 187 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 E+ + F SFPF TPDQ AI + D+ Q MDRLV GDVGFGKTEVAMRA F Sbjct: 188 ERAKQFDASFPFTLTPDQTSAIQEITEDLQQDAPMDRLVIGDVGFGKTEVAMRAMFHVAS 247 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 + V ++ PTT+LA+QH N RF + +E+++R A +Q I + +GK+ I+ Sbjct: 248 SGGGVFMMAPTTVLAKQHAANLAVRFRPLGINVELVTRHIQAAKQNTIFDDFRDGKVQII 307 Query: 708 IGTHKLLQ-SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 +GTHKL+ +K L LL++DEE RFGV+HK++I A++A VD+LTL+ATPIPRTL+MA Sbjct: 308 VGTHKLVNLEQEYYKQLRLLVIDEEQRFGVKHKDQISALKAEVDVLTLSATPIPRTLHMA 367 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 MSG RD S++ TPP R + T + + +R+AI EI R GQ+YY+ + ++ A Sbjct: 368 MSGFRDASLVQTPPPERRPINTVLAPQNDDDIRKAIEYEISRNGQIYYIVPRINMMRDAC 427 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 +RL L P +I HGQM ++ M F + +VL+ TTI+E+G+DIP NTIIIE Sbjct: 428 DRLLRLFPNLQIMTAHGQMDGEAIDDAMESFSNGSADVLIATTIVESGLDIPNCNTIIIE 487 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTP-HPKAMTTDAQKRLEAIASLEDLGAGFAL 945 FGLA L+QLRGRVGR+ QAYA++ +TT AQ+RL A+ LG GF L Sbjct: 488 NVQFFGLASLYQLRGRVGRAGRQAYAYMFYSADESELTTGAQERLAALEECCGLGEGFRL 547 Query: 946 ATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVE 1005 + D+ IRG G + GE+QSG ++++G LY+ELL + + R +++ +V Sbjct: 548 SERDMGIRGVGTMFGEKQSGDVDSVGADLYLELLYKQLQRIDNLRIKTIDAD-----DVR 602 Query: 1006 LRMPSL---LPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLD 1062 + + +I I S ++ ++ + D FG + + + + Sbjct: 603 VGAAGYEFGITPFYIATTEASDEVKATIDSITAHEQVHDVLALMRDTFGEPDEFSLSCVF 662 Query: 1063 IARLRQQAQKLGIRKLEGNEKGG-VIEFAEKNHVNPAWLIGLLQKQPQHYR---LDGPTR 1118 +R A LGI+ + + +I+ + L L++ Y +D R Sbjct: 663 AREMRILAGDLGIQGILLDSPTAPIIDLITDASIMVKEL--LVEGISDAYDVEIIDTGIR 720 Query: 1119 LKFIQDLSERKTRIEWVRQFMRELEEN 1145 LK + D+ ++ + + +R++ + Sbjct: 721 LKTMTDM-TMHGKVMYTVKILRQITGS 746 >UniRef50_B7GBS8 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GBS8_PHATR Length = 942 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 234/661 (35%), Positives = 353/661 (53%), Gaps = 70/661 (10%) Query: 479 IGQPVVHLEHGVGRYA---------------------------------------GMTTL 499 G VVH ++G+GR+ + + Sbjct: 99 PGDFVVHRKYGIGRFETTCLRPKTKLNEEERLAQEERRAEILTTELRKRKRVTPDEIQEI 158 Query: 500 EAGGITGE-----------YLMLTYANDAKLYVPVSSLHLISRYAGGAEE-NAPLHKLGG 547 A T E L +TYA+ A ++VPV + +SRY G L ++ G Sbjct: 159 RARFGTEEDTDPLSNPQTTVLEITYAD-AVVHVPVDRAYRLSRYRAGDAVVKPKLSRVKG 217 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY-QLFCDSFPFETTPDQA 606 +AWS+A+QK E +A ++L +YA R + F E Q F SF +E T DQ Sbjct: 218 EAWSKAKQKVEENTLQLAQDVLALYATRETLQRQPFDPSVEDVVQEFSKSFLYEPTTDQK 277 Query: 607 QAINAVLSDMC-QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 665 + + +DM + MDRL+CGDVGFGKTEVA+RA F ++ N +Q A+L PT +LA QH Sbjct: 278 KCFEEIENDMVWRSRPMDRLICGDVGFGKTEVAIRALFRSIINGRQAALLAPTGVLAAQH 337 Query: 666 YDNFRDRFAN---WPVRIEMISRFRSAKEQ--TQILAEVAEGKIDILIGTHKLLQSDVKF 720 Y N R + + I ++ + + ++ E+ GK +++GTH LL +++KF Sbjct: 338 YKNIVKRMGPGTEYNINIALLRGGMGKQTKAGRELRGEIEGGKTQLIVGTHALLSNEMKF 397 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 K+LGLL+VDEE RFGV+ KER+K + +D+LTL+ATPIPRTL M++SG+RD S I +PP Sbjct: 398 KNLGLLVVDEEQRFGVKQKERLKLICDGIDVLTLSATPIPRTLQMSLSGIRDTSTIRSPP 457 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 R T V+++ +V+ AI E+ RGGQ YY+ + + +A + + L P RI Sbjct: 458 PMRKPTVTHVQDFSEDIVKTAISTELARGGQCYYVVPRISMLDEAEQTIQSLFPGIRIIQ 517 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 HG+M+ E + +F ++VL+ TT+IE G+DIP+ NTI+++ + FG++ L+QLR Sbjct: 518 AHGRMQRNGAEENVAEFAEGNYDVLLATTVIENGVDIPSVNTIVVQNSQAFGMSTLYQLR 577 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGRS QA+A+ L +++T A RL+AI L +LG+GF +A DLEIRGAG LLG Sbjct: 578 GRVGRSDKQAFAYFLYR-EESITEQAAMRLQAIGELSELGSGFDVANRDLEIRGAGSLLG 636 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS-----LLPDD 1015 EQSG +GF LYM +L+ ++ L+ L+ +T + LP Sbjct: 637 TEQSGMAAKVGFDLYMRMLKKSIRKLRG-----LDLPLVPRTNILFPTDGSPSTFSLPMS 691 Query: 1016 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 FI + R S + A++ + L + E ++G LP + L L ++LGI Sbjct: 692 FIERQSERRSEETKARLAESTSALVTLTNEWKSKYGSLPSTLQNQLKTLHLHACTRRLGI 751 Query: 1076 R 1076 Sbjct: 752 D 752 >UniRef50_B7F5N3 cDNA clone:J013044D20, full insert sequence n=6 Tax=Magnoliophyta RepID=B7F5N3_ORYSJ Length = 590 Score = 566 bits (1460), Expect = e-159, Method: Composition-based stats. Identities = 196/536 (36%), Positives = 316/536 (58%), Gaps = 8/536 (1%) Query: 564 VAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDM-CQPLAM 622 + L+++Y QR ++ + F FP+E TPDQ QA V D+ + M Sbjct: 1 MVVNLMELYLQRMRQKRPPY-PKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPM 59 Query: 623 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIE 681 DRL+CGDVGFGKTEVAMRA F+ + Q VL PT +LA+QHYD +RF+N+P +++ Sbjct: 60 DRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVA 119 Query: 682 MISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKER 741 M S ++ +E+ +++ ++ G + I++GTH +L + + +LGLL+VDEE +FGV+ KE+ Sbjct: 120 MFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEK 179 Query: 742 IKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREA 801 I + +A++D+LTL+ATPIPRTL +A++G RD S+++TPP R+AV+T+V + A Sbjct: 180 IASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSA 239 Query: 802 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR 861 I E+ RGGQV+Y+ ++ I + L + +P+ +A+ HG+ + ++ M F Sbjct: 240 IKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGE 299 Query: 862 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA 921 +LVCT IIE+GIDIP ANT++++ A+ FGLAQL+QLRGRVGRS + +A+L Sbjct: 300 VKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSL 359 Query: 922 MTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLEN 981 ++ A RL AI DLG GF +A D+ IRG G L GE+QSG + +G L+ ++L Sbjct: 360 LSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDML-- 417 Query: 982 AVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTEN--EL 1039 D+L + L + + ++++ + S L ++I + + A A ++ L Sbjct: 418 -FDSLSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLWTL 476 Query: 1040 EEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHV 1095 + +L ++G P LL +R+ A LGI ++ + K +++ V Sbjct: 477 IQFTEDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKV 532 >UniRef50_C0BP78 Transcription factor CarD n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BP78_9BACT Length = 681 Score = 531 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 190/689 (27%), Positives = 320/689 (46%), Gaps = 60/689 (8%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADW 73 + L L G+A + + + P VLI D + A + +++ F + V+ Sbjct: 21 KTVYLNGLAGSALSFAITALFNESKVPFVLILEDKETAAYVLNDLESFIGEDRVLFYPAS 80 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQL-PTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKK 132 PY I R L + + ++ + ++V L + L +K+ Sbjct: 81 YKKPYQHSQTDNANILLRAEVLQRFGKKGKPLCIVSYPEAIFEKVIQKKTLEKNTLNLKQ 140 Query: 133 GQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 G+ +S D L L G++ VD V GE++ RG ++D+F + PYR++FF +E++S+ Sbjct: 141 GELISLDFLNESLFEYGFKRVDFVSSPGEFSVRGGIVDVFSYAYDHPYRIEFFGEEVESI 200 Query: 193 RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGT 252 R FD+ SQR++ + E I+++P DT ++D Sbjct: 201 RTFDIVSQRSIAKQEEISIIP--------------NVTQTDTLTKRQD------------ 234 Query: 253 LPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMR 312 FFS F+ L+ G L+ E + + +F+ + + Sbjct: 235 -----------FFS------FTDKKTTVLIRKPGVLKQKIESLYKEAVLKFDTLEGEIAQ 277 Query: 313 PLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLD 372 +PP++L+++ ELF L+ V L+++ A A LG QK D A+ +D Sbjct: 278 --IPPENLYVQSKELFGALEKHQCVFLESQP----AEIAQLGIQKQQD---SAENNILID 328 Query: 373 ALRKFLETFDGPVVFSVESEGRREALG---ELLARIKIAPQRIMRLDEASDRGR--YLMI 427 F+ +E + G L + +R + EA+++ ++ Sbjct: 329 FKGTDQPAFNKKFPLIIERLAQNNLKGTNNYLFCASEQQAKRFSDIFEAAEKEVPYKTVV 388 Query: 428 GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLE 487 GF + +LA + ++ ER + + + L +L IG V H++ Sbjct: 389 LPIHRGFEIPLLHLACYTDHEIF-ERYHKFHIKNGFDKKEAISLSELNKLEIGDYVTHID 447 Query: 488 HGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGG 547 HG+G++ G+ + G E + L+Y LYV + SLH I+++ G ++KLG Sbjct: 448 HGIGKFGGLQKIAVEGKKQEAIKLSYGERDVLYVSIHSLHKIAKFNGKDGSPPKIYKLGS 507 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607 AW + ++K +V+ +A +L+ IYA+R ++GF + D SF +E TPDQ Sbjct: 508 GAWKKVKEKTKSRVKKLAFDLIQIYAKRRLQKGFQYAADSSLQHELEASFLYEDTPDQLT 567 Query: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667 A + DM MDRL+CGDVGFGKTEVA+RAAF AVDN KQVA+LVPTT+LA QH++ Sbjct: 568 ATEDIKKDMESERPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAILVPTTILAYQHFN 627 Query: 668 NFRDRFANWPVRIEMISRFRSAKEQTQIL 696 R + PV ++ ++RFRS+KE+ I Sbjct: 628 TLTARLKDMPVSVDYLNRFRSSKEKKDIF 656 >UniRef50_B5Y798 ATP-dependent DNA helicase RecG n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y798_COPPD Length = 793 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 184/497 (37%), Positives = 269/497 (54%), Gaps = 30/497 (6%) Query: 532 YAGGAEENAPLHKL-GGDAWSRARQKAAEKVRDVAAELLDIYAQ-RAAKEGFAFKHDREQ 589 + + LH+ + +AR + A + V LL + + +G +F+ +R+ Sbjct: 293 FLSYPDAVEKLHRPENQAQFEKARSEIAYREIFVLQVLLALRKKVIGQAQGISFRVERDW 352 Query: 590 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH 649 + PF T Q + I +L+DM + M+RL+ GDVG GKT VAM A F+A N Sbjct: 353 IEELERKLPFTLTNAQKRVILEILNDMQKSKPMNRLLQGDVGSGKTVVAMFAMFVAAKNG 412 Query: 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIG 709 KQ AV+VPT +LA QHY F + +R+ ++ SA E++++ + G++DI++G Sbjct: 413 KQSAVMVPTEVLAFQHYMVFSQWAEQFGLRVGLLVGSLSASEKSKVKRYLKSGQLDIVVG 472 Query: 710 THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKA--MRANVDILTLTATPIPRTLNMAM 767 TH L+Q D FKDLGL+I+DE+HRFGV + + + D+L ++ATPIPRTL + Sbjct: 473 THALIQEDTSFKDLGLVIIDEQHRFGVYQRAALISMDKSKQPDVLVMSATPIPRTLVLTY 532 Query: 768 SGMRDLSIIATPPARRLAVKTF-VREYDSMVVREAILREILRGGQVYYLYNDVENIQ--- 823 G D+S+I P R VKTF V E V EA+ RE+ G Q Y + +E + Sbjct: 533 YGDLDVSVIDELPPNRKPVKTFWVSEKRRSSVYEAVKRELDEGRQAYVVAPLIEESESIE 592 Query: 824 -KAAERLAE-----LVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 877 AA L E + + ++ + HG+M + E + VM++F VLV TT+IE G+D+ Sbjct: 593 AAAATSLYEELCSTFLKDYKVGLLHGKMNKEEKKNVMDEFRKGSLQVLVSTTVIEVGVDV 652 Query: 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 P A ++IE AD FGL+QLHQLRGRV RS +QAY +L+ T +A +RLE++ Sbjct: 653 PNATVMVIEGADRFGLSQLHQLRGRVVRSSYQAYCYLIANAK---TQEAVERLESMVKYS 709 Query: 938 DLGAGFALATHDLEIRGAGELLGEEQSGS--METIGFSLYMELLENAVDALKAGREPSLE 995 D GFALA DL +RG GEL+GE Q G M M++LE A E Sbjct: 710 D---GFALAEKDLLLRGPGELMGERQHGFSGMRVADLIKDMKMLEPA--------RQDAE 758 Query: 996 DLTSQQTEVELRMPSLL 1012 L S+ +E S L Sbjct: 759 RLVSEDPNLERPSSSFL 775 >UniRef50_B8E2R9 ATP-dependent DNA helicase RecG n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E2R9_DICTD Length = 779 Score = 497 bits (1279), Expect = e-138, Method: Composition-based stats. Identities = 159/445 (35%), Positives = 240/445 (53%), Gaps = 24/445 (5%) Query: 569 LDIYAQRAAKE---GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRL 625 L++ +R E F E + F S PF+ T Q + + D+ M RL Sbjct: 318 LNLAKKRREIEELSAPVFNIQSELVEKFLGSLPFKLTKAQEKVWEEIKKDLSSGRPMHRL 377 Query: 626 VCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISR 685 + GDVG GKT +A A LA DN Q A +VPT +LA+QHY+ ++ F ++I +++ Sbjct: 378 LQGDVGSGKTVIAALATILAYDNGYQTAFMVPTEILAEQHYNRLKNIFEPLGIKIALLTS 437 Query: 686 FRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAM 745 KE+T I ++AEGK+ ++IGTH L+Q +V FK LGL+I+DE+HRFGV + ++ Sbjct: 438 STPKKEKTYIYLDLAEGKLPVVIGTHALIQEEVTFKKLGLVIIDEQHRFGVIQRAKLWKK 497 Query: 746 RANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV-REYDSMVVREAILR 804 +L +TATPIPR+L + + G D+SII P R V T++ + + V + + Sbjct: 498 GEAPHLLVMTATPIPRSLALVLYGELDISIIDELPPGRKPVITYLFSKKERRKVYSFVEK 557 Query: 805 EILRGGQVYYLYNDVENIQ--------KAAERLAELVPEARIAIGHGQMRERELERVMND 856 EI +G Q + + +E + K E L + P I + HG + E R+M + Sbjct: 558 EIEKGKQAFVVCPLIEESEKLEAESAKKLYEELKKFFPRFNIGLIHGLVPREERTRIMEE 617 Query: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 F +LV TT+IE G+DIP A+ ++IE AD FGLAQLHQLRGRVGR Q+Y +L+ Sbjct: 618 FQKGEIQILVATTVIEVGVDIPNASIMVIENADRFGLAQLHQLRGRVGRGSEQSYCFLIA 677 Query: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYM 976 +A++RL+ + D GF +A DLEIRG GE G +Q G+++ + L Sbjct: 678 DLK---GENAKERLKVMVETND---GFVIANKDLEIRGPGEFFGTKQHGTLDVLFVDLTK 731 Query: 977 EL------LENAVDALKAGREPSLE 995 ++ A + +K E E Sbjct: 732 DMKLFEIARNEAFEVIKNQNERIEE 756 >UniRef50_A5GF54 ATP-dependent DNA helicase RecG n=15 Tax=Bacteria RepID=A5GF54_GEOUR Length = 829 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 165/419 (39%), Positives = 234/419 (55%), Gaps = 17/419 (4%) Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 A +EG F+ + + PF T Q + ++ + +DM P M RLV GDVG GKT Sbjct: 376 ALEEGIDFQVTHKYTKELLKLLPFSLTNAQRRVLSEIKNDMMAPHPMHRLVQGDVGCGKT 435 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 VA+ AA +AV+N QVA++ PT +LA+QH+ N V++ +++ K + Sbjct: 436 LVALMAALVAVENDYQVAIMAPTEILAEQHFLNIHHWCDALGVKVALLTSSLKGKAKKAA 495 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 L E+A G ++IGTH ++Q V+F+ LGL I+DE+HRFGV + +K N DIL +T Sbjct: 496 LEEIATGNAQVVIGTHAVIQDKVEFRRLGLGIIDEQHRFGVLQRGILKKKGQNPDILVMT 555 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVR-EYDSMVVREAILREILRGGQVYY 814 ATPIPRTL M + G LS+I P R V+T + E V I E+ +G Q Y Sbjct: 556 ATPIPRTLAMTVFGDLSLSVIDELPPGRTPVETRIAFESRRSQVYGVIREEVKKGRQAYV 615 Query: 815 LYNDVENIQK--------AAERLA-ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 865 +Y VE +K AE+L ++ P+ R+ + HG+MR E E VM F + ++L Sbjct: 616 IYPLVEESEKSDLKAAAQMAEQLQSDVFPDLRVGLLHGRMRPDEKEAVMAAFKARETDIL 675 Query: 866 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTD 925 V TT+IE GID+P A ++IE A+ FGL+QLHQLRGRVGR ++ LLT ++ D Sbjct: 676 VATTVIEVGIDVPNATVMVIEHAERFGLSQLHQLRGRVGRGSDKSRCILLT--TGRLSED 733 Query: 926 AQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG--SMETIGFSLYMELLENA 982 +KRL + S D GF +A DLEIRG G+ LG Q+G +LE A Sbjct: 734 GEKRLRVMESTSD---GFRIAEADLEIRGPGDFLGTRQAGLPDFRVANILRDGRILEEA 789 >UniRef50_C9RAM3 ATP-dependent DNA helicase RecG n=2 Tax=Clostridia RepID=C9RAM3_AMMDK Length = 685 Score = 493 bits (1270), Expect = e-137, Method: Composition-based stats. Identities = 175/481 (36%), Positives = 256/481 (53%), Gaps = 30/481 (6%) Query: 555 QKAAEKVRDVAAE---LLDIY-AQRA-----AKEGFAFKHDREQYQLFCDSFPFETTPDQ 605 +KA E + + E LL + QR A++ + + D Q F S PF TP Q Sbjct: 206 EKAEEARKRLVLEELFLLQLALGQRRRHLASAQKPYPCRPDGPLVQQFLASLPFTLTPAQ 265 Query: 606 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 665 +A + DM P M RL+ GDVG GKT VA A AV+N Q A++ PT +LA+QH Sbjct: 266 ERAWREISRDMESPRPMHRLLQGDVGAGKTVVAALALVKAVENGLQGALMAPTEILAEQH 325 Query: 666 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 725 + N +++ +++ + + + +A +A G ID++IGTH L+Q +V F LGL Sbjct: 326 FLNLHPLLEKIGIKVGLLTGNLKKELRWRQIAAIARGDIDVVIGTHTLIQEEVSFHRLGL 385 Query: 726 LIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785 +++DE+HRFGVR + ++ D+L +TATPIPRTL + + G DLS+I + P R Sbjct: 386 VVIDEQHRFGVRQRTILRRKGEAPDVLVMTATPIPRTLALTLYGDLDLSVIDSLPPGRQP 445 Query: 786 VKT-FVREYDSMVVREAILREILRGGQVYYLYNDVENIQK--------AAERLAELVPEA 836 VKT +++ V I +E +G Q +++ +E ++ AE L + PE Sbjct: 446 VKTIWIKPSALPRVYNFIRQEAAQGNQAFFVCPLIEESEELNAQAASKLAEELKKFFPEF 505 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 +I + HG+++ E ERVM F +LV T+++E G+D+P A ++I AD FGLAQL Sbjct: 506 QIGLLHGRLKLEEKERVMAAFRSGEIKLLVTTSVVEVGVDVPNATVMVIYDADRFGLAQL 565 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 HQLRGRVGRS +Y L+ +T +AQ RL+A +L GFALA DL IRG G Sbjct: 566 HQLRGRVGRSDKPSYCILVA---DKVTPEAQARLKA---FTNLRDGFALAEEDLRIRGPG 619 Query: 957 ELLGEEQSGSMETIGFSL--YMELL----ENAVDALKAGREPSLEDLTSQQTEVELRMPS 1010 E G QSG E L +LL E A L+ S + E+ LR + Sbjct: 620 EFFGTRQSGLPELKVADLLRDHQLLPLAREEAWRFLEKDPSLSSPLGRILRQEIALRFAA 679 Query: 1011 L 1011 Sbjct: 680 F 680 >UniRef50_A3DEY1 ATP-dependent DNA helicase RecG n=25 Tax=Clostridia RepID=A3DEY1_CLOTH Length = 694 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 156/454 (34%), Positives = 248/454 (54%), Gaps = 18/454 (3%) Query: 578 KEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV 637 KEG AF +R++ F +S F T Q + + DM M+RLV GDVG GKT V Sbjct: 244 KEGIAFAPNRKEMVDFINSIGFTLTNAQKRVWEEIEKDMESNRVMNRLVQGDVGSGKTIV 303 Query: 638 AMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILA 697 A A AV + Q A++VPT +LA+QHY++ +D + + ++ ++ K++++IL+ Sbjct: 304 AALALAKAVKSGYQGAMMVPTEILAKQHYESLKDIMGKHGINVALLVGSQTKKQRSEILS 363 Query: 698 EVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTAT 757 ++ G+++I+IGTH L++ VKF LGL+I DE+HRFGVR + + N DIL +TAT Sbjct: 364 KIESGEVNIVIGTHALIEEKVKFSKLGLVITDEQHRFGVRQRAMLSNKGINPDILVMTAT 423 Query: 758 PIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYD-SMVVREAILREILRGGQVYYLY 816 PIPRTL + + G D+SII P R VKT+ + + I ++IL G Q Y + Sbjct: 424 PIPRTLALILYGDLDISIIDELPPGRKPVKTYAVDNSMRQRINNFIKKQILEGRQAYIIC 483 Query: 817 NDVENIQKAAER---------LAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 V+ + + E + R+ + HG+M E E VM F ++LV Sbjct: 484 PLVDESDEIEAKSALKTAEKIAKEDFKDFRVGLLHGKMPAGEKEEVMQKFLKGEIDILVS 543 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 TT++E G+++P A +++E A+ FGLAQLHQLRGRVGR HQ+Y L ++ + A+ Sbjct: 544 TTVVEVGVNVPNATLMVVENAERFGLAQLHQLRGRVGRGPHQSYCILY---NESKSQIAK 600 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK 987 +R++ + D GF ++ DL IRG GE G Q G + +LY ++ + + Sbjct: 601 ERMKVMQETTD---GFVISEKDLLIRGPGEFFGTRQHGLPDLKIANLYRDM--EILKKAQ 655 Query: 988 AGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVN 1021 + L+ + E L++ + + FI ++ Sbjct: 656 EAAQEILKRDRNLFMEENLKLKEKIAEKFIEKIH 689 >UniRef50_B5YEA4 ATP-dependent DNA helicase RecG n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YEA4_DICT6 Length = 778 Score = 491 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 166/460 (36%), Positives = 251/460 (54%), Gaps = 21/460 (4%) Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 S +++ A E++ + L + + FK D E + F +S PF+ T Q + Sbjct: 302 SASKRIAFEELFFLQLNLAEKRKEIEKLSAPVFKTDSELVERFLNSLPFKLTKAQEKVWE 361 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 + D+ M RL+ GDVG GKT +A AA LA DN Q A +VPT +LA+QHY+ + Sbjct: 362 EIKKDLSSGRPMHRLLQGDVGSGKTVIAALAAILAYDNGYQTAFMVPTEILAEQHYNRLK 421 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 F +RI +++ KE+T I ++AEGK+ I+IGTH L+Q +V FK LGL+I+DE Sbjct: 422 KIFEPLGIRIALLTSSTPKKEKTYIYLDLAEGKLPIVIGTHALIQEEVTFKKLGLVIIDE 481 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 +HRFGV + ++ N +L +TATPIPR+L + + G D+SII P R V T++ Sbjct: 482 QHRFGVIQRAKLWKKGENPHLLVMTATPIPRSLALVLYGELDISIIDELPPGRKPVITYL 541 Query: 791 -REYDSMVVREAILREILRGGQVYYLYNDVENIQ--------KAAERLAELVPEARIAIG 841 + + V + +EI++G Q + + +E + K E L + P+ +I + Sbjct: 542 FSKRERKKVYSFVEKEIMKGKQAFVVCPLIEESEKLEAESAKKLYEELKKFFPQFKIGLI 601 Query: 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901 HG + E R+M +F + +LV TT+IE G+DIP A+ ++IE A FGLAQLHQLRG Sbjct: 602 HGLVPSEERNRIMEEFQNGEIQILVATTVIEVGVDIPNASIMVIEDAHRFGLAQLHQLRG 661 Query: 902 RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961 RVGR QAY +L+ DA +RL+ + D GF +A DLEIRG GE G Sbjct: 662 RVGRGSEQAYCFLIADLK---GEDATERLKVMVETND---GFVIANKDLEIRGPGEFFGT 715 Query: 962 EQSGSMETIGFSLYMEL------LENAVDALKAGREPSLE 995 Q G++ ++ L ++ A + ++ E E Sbjct: 716 RQHGALNSLIVDLTKDMKLFEIARNEAFELMRYENERLSE 755 >UniRef50_Q6MKR1 ATP-dependent DNA helicase RecG n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MKR1_BDEBA Length = 701 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 164/496 (33%), Positives = 267/496 (53%), Gaps = 35/496 (7%) Query: 548 DAWSRARQKAAEKVRDVAAELLDIY--AQR---AAKEGFAFKHDREQYQLFCDSFPFETT 602 +S + A +++ L++Y +++ + ++ E+ + S PFE T Sbjct: 217 KQYSEFKTAAQKRIIFDEFFWLELYLASKKAGFQKEGAPQIRNSGEKMRALLQSLPFEMT 276 Query: 603 PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLA 662 Q + + +D+ + M R+V GDVG GKT V+ AA A ++ Q ++ PT +LA Sbjct: 277 GAQKRVFTEIKADLEKGHPMHRMVQGDVGSGKTLVSFMAAIYAAESGYQSCLMAPTEILA 336 Query: 663 QQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 722 +QH+ N R +R+ ++ A E+ Q+LA + G+ID++IGTH L++ +V+F + Sbjct: 337 EQHFKNARKVLEPLGIRLGLLVGKSKASERKQLLAALGAGEIDLIIGTHALIEDEVQFAN 396 Query: 723 LGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR 782 LGL+I+DE+HRFGV + +K + L +TATPIPRTL M + G D+SII PA Sbjct: 397 LGLVIIDEQHRFGVEQRGVLKNKGNSPHFLVMTATPIPRTLAMTVYGDLDVSIIDEMPAG 456 Query: 783 RLAVKTFVR-EYDSMVVREAILREILRGGQVYYLYNDVENIQKA--------AERLAELV 833 R ++T E + +L +I +G Q Y +Y VE +K E+L EL Sbjct: 457 RSPIQTRATFESKRPQALQFMLEQIQKGRQAYIVYPLVEESEKIDLKDAVSEYEKLKELY 516 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 P+ +I + HG+M+ E ++VM+ F VLV TT+IE G+D+P AN +IIE A+ FGL Sbjct: 517 PQLKIGLLHGKMKPDEKDQVMDQFRKNEIQVLVSTTVIEVGVDVPNANIMIIEHAERFGL 576 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 +QLHQLRGRVGR H+++ L+ + A++ + + R E + D GF +A DLE+R Sbjct: 577 SQLHQLRGRVGRGEHKSFCILIMGY--AVSEEGKARTEMMEKTTD---GFKIAEFDLEMR 631 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLP 1013 G GE +G +QSG GF L + + A+ L+ RE + E + + + Sbjct: 632 GPGEFMGTKQSGLS---GFKLANLVRDMAI--LQEAREAAFE-VLRKDPRL--------- 676 Query: 1014 DDFIPDVNTRLSFYKR 1029 ++ + + + Sbjct: 677 -SYVENQGLKAELLRE 691 >UniRef50_C0BPF2 Helicase domain protein (Fragment) n=2 Tax=Bacteroidetes RepID=C0BPF2_9BACT Length = 465 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 180/432 (41%), Positives = 270/432 (62%), Gaps = 14/432 (3%) Query: 697 AEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTA 756 + G+IDI+IGTH+L+ VKFKDLGLLIVDEE +FGV K+++K+++ NVD+LTLTA Sbjct: 1 ERLENGRIDIVIGTHQLVNKAVKFKDLGLLIVDEEQKFGVGVKDKLKSLKENVDVLTLTA 60 Query: 757 TPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLY 816 TPIPRTL ++ RDLS+I T P R +++ V ++ ++REAI EI R GQV++++ Sbjct: 61 TPIPRTLQFSLMAARDLSVINTAPPNRYPIESNVVRFNETLIREAISYEIQRDGQVFFIH 120 Query: 817 NDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876 N +ENI + A + LVP+AR+ IGHGQM ++LE +M F F+VLV TTIIE+G+D Sbjct: 121 NRIENITEVAGLIQRLVPDARVGIGHGQMEGKKLENLMKAFMGGEFDVLVSTTIIESGLD 180 Query: 877 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 + ANTI I A++FGL+ LHQ+RGRVGRS+ +A+ + +TP + MT DA+KR++A+ Sbjct: 181 VSNANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYEVMTADARKRIQALEQF 240 Query: 937 EDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGR-----E 991 LG+GF +A DLEIRGAG++LG EQSG + IGF Y +++ A+D LK E Sbjct: 241 TALGSGFNIAMKDLEIRGAGDILGGEQSGFINEIGFETYQKIMAEAIDELKNSEFKDLYE 300 Query: 992 PSLEDLTSQ---QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELID 1048 +ED +T+++ + L PDD+I + + RL Y + E+EL+ + ELID Sbjct: 301 APIEDENKAFALETQMDADIEMLFPDDYINNTSERLKLYTTLNGLSNESELDAFEKELID 360 Query: 1049 RFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVN------PAWLIG 1102 RFG +PD + LL +++ +G+ K+ + + F + ++ Sbjct: 361 RFGPIPDETKDLLLAVQVKWICNYMGMEKVVMKKGKFLGYFIANQQSDYYQSARFRKVLA 420 Query: 1103 LLQKQPQHYRLD 1114 +Q + L Sbjct: 421 FVQAHSKQCSLK 432 >UniRef50_D1BMY0 ATP-dependent DNA helicase RecG n=3 Tax=Veillonella RepID=D1BMY0_VEIPT Length = 680 Score = 485 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 164/466 (35%), Positives = 250/466 (53%), Gaps = 19/466 (4%) Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 Q A E++ + A L + ++ G + E ++ PF T DQ +A+ Sbjct: 205 EARHQLAYEELFVMQAGLALLRSKEQCHRGPKMGPNGELMARCIENLPFSLTGDQQRALE 264 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 + DM M RL+ GDVG GKT VA A++N Q A++ PT +LA QHY+ R Sbjct: 265 DIRIDMEDERPMQRLLQGDVGSGKTIVATLGLLKAIENGYQGALMAPTEILAAQHYEGIR 324 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 AN + IE+++ + KE+ I +A+G I ++IGTH L+Q +V F +LGL+I+DE Sbjct: 325 TVCANLGITIELLTGSTTKKEKECIYEGLADGSIHMIIGTHALIQENVNFHNLGLVIIDE 384 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF- 789 +HRFGV + R++ +L +TATPIPRT+ +++ G +S+I P R VKT+ Sbjct: 385 QHRFGVEQRARLQQKGTYPHVLIMTATPIPRTMTLSVYGDLAVSLIKEMPPGRKPVKTYA 444 Query: 790 VREYDSMVVREAILREILRGGQVYYLYNDVENIQK----AAERLAELVPE-----ARIAI 840 V + +E+ G QVY + VE +K AAE L + E + + Sbjct: 445 VDSSYKDRLCTFFGKEMAEGRQVYVVCPLVEESEKLDLQAAEELYLELKEYFYKAYEVGL 504 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 HG+M+ E + VMN FH ++LV TT+IE G+++P A + +E A+ FGL+QLHQLR Sbjct: 505 VHGRMKPSEKDEVMNAFHKGEISLLVSTTVIEVGVNVPNATIMCVEGAERFGLSQLHQLR 564 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGR +Q+Y L++ +Q+RL+ + ++D GF LA DL +RG+G+L G Sbjct: 565 GRVGRGAYQSYCILVSDSKN---DVSQERLKLMEQIQD---GFELAEQDLLLRGSGQLFG 618 Query: 961 EEQSG--SMETIGFSLYMELLENA-VDALKAGREPSLEDLTSQQTE 1003 QSG + +E+L A D L + +E L S E Sbjct: 619 LAQSGLPDLRVANIIKDIEILVEARKDVLDFANQFGIEKLESVMKE 664 >UniRef50_C0EVE3 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EVE3_9FIRM Length = 682 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 154/437 (35%), Positives = 235/437 (53%), Gaps = 22/437 (5%) Query: 569 LDIYAQRAAKEGFAFKHD-REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 L++ R + + E + F ++ P+ T Q + +N + D +AM+RL+ Sbjct: 230 LELVKDREEQALNHYIIPMEEPVKRFVENLPYPLTGAQKKVLNEIRQDFSDTMAMNRLLQ 289 Query: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 GDVG GKT VAM A + AV Q A++ PT +LA+QHY NF + + + +++ Sbjct: 290 GDVGSGKTIVAMTAMYAAVLAGYQAALMAPTEVLAEQHYQNFVKLLSPLGITVALLTGST 349 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 AKE+ +I A A G+I ILIGTH ++Q DV F +L ++ DE+HRFGV+ ++ Sbjct: 350 KAKEKREIKAACASGEIQILIGTHAVIQDDVAFDNLAFIVTDEQHRFGVKQRDAFMKKGK 409 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT-FVREYDSMVVREAILREI 806 + +L ++ATPIPRTL + + D+SI+ PA RL +K V E I +++ Sbjct: 410 DPHVLVMSATPIPRTLGIILYRDLDVSIMNEMPASRLPIKNSVVGTSYRPAAWEFIRKQV 469 Query: 807 LRGGQVYYLYN--------DVENIQKAAERLAELV-PEARIAIGHGQMRERELERVMNDF 857 G Q Y + D+EN+++ A L++ + P + +G MR E +M F Sbjct: 470 ALGHQAYVICPMIEENEKMDLENVEEYARMLSQALPPSITVEALNGHMRPAEKNDIMERF 529 Query: 858 HHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP 917 +LV TT++E GID+P A ++IE A+ FGLAQLHQLRGRVGR Q+Y ++ Sbjct: 530 SKNEIQILVSTTVVEVGIDVPNATVMLIENAERFGLAQLHQLRGRVGRGKAQSYCVFISG 589 Query: 918 HPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLY-- 975 K +A +RL I D GF +A DL++RG GE G +QSG+M +Y Sbjct: 590 SEK---EEAMERLSIIGHSND---GFEIANEDLKLRGPGEFFGVKQSGTMNFALGDIYSN 643 Query: 976 ---MELLENAVDALKAG 989 +++ AVD LK Sbjct: 644 ADILKMASEAVDYLKKE 660 >UniRef50_C6VPY9 ATP-dependent DNA helicase RecG n=34 Tax=Bacteria RepID=C6VPY9_LACPJ Length = 679 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 147/425 (34%), Positives = 224/425 (52%), Gaps = 16/425 (3%) Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 + R E+ ++ + A G A +D ++ + F + PFE T Q + +N Sbjct: 205 AARRSATYEEFLLFQMQMQVLKQTDATTNGIAIAYDNDRLKAFIKTLPFELTHAQKRVVN 264 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 + D+ P M+RL+ GDVG GKT VA + A+ Q A++ PT +LA+QH +N Sbjct: 265 EICLDLKSPKHMNRLLQGDVGSGKTIVAAIVMYAAITAGYQAALMAPTEILAEQHANNLA 324 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 FA+ V + +++ + +LA +A G+I++LIGTH L+Q V + +LGL+I DE Sbjct: 325 QVFADTDVNVALLTGATKPAARKTLLAALAAGEINLLIGTHALIQDGVTYANLGLVITDE 384 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV-KTF 789 +HRFGV + + D L +TATPIPRTL + G D+S I PA R + T+ Sbjct: 385 QHRFGVNQRAAFRQKGGQPDALAMTATPIPRTLAITAYGEMDVSEIDELPAGRQPIQTTW 444 Query: 790 VREYDSMVVREAILREILRGGQVYYLYN--------DVENIQKAAERLAELVP-EARIAI 840 VR + + ++I G Q Y + DV+N + + L E ++ + Sbjct: 445 VRSNQANSALSFVHQQIDNGSQAYVVTPLIEESETLDVKNAEALSANLQEYFGASVKVGL 504 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 HG+M+ E + VM F +LV TT+IE G+D+ A ++I AD FGLAQLHQLR Sbjct: 505 LHGRMKPEEKDAVMAAFKAGDIQLLVSTTVIEVGVDVKNATIMMIYDADRFGLAQLHQLR 564 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGR +Y L+ +R++ + + GF LA DLE+RGAG++LG Sbjct: 565 GRVGRGTKASYCILVADPKN---QQGIERMQIMTQTTN---GFVLAQKDLELRGAGDVLG 618 Query: 961 EEQSG 965 +QSG Sbjct: 619 VKQSG 623 >UniRef50_Q1PZ44 Similar to DNA helicase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ44_9BACT Length = 686 Score = 479 bits (1233), Expect = e-133, Method: Composition-based stats. Identities = 163/455 (35%), Positives = 254/455 (55%), Gaps = 25/455 (5%) Query: 569 LDIYAQRAAKEG---FAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRL 625 + + +R +G FK + PF T Q + I + DM M+RL Sbjct: 226 MAMALRRYRIKGETRIPFKAGANVDAHIRNIIPFTLTKAQERVIYEIREDMKSDKPMNRL 285 Query: 626 VCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISR 685 + GDVG GKT VA+ AA +AV N Q + PT LLAQQH+ + + VR+ +++ Sbjct: 286 LQGDVGSGKTVVALYAALIAVANGYQATFMAPTELLAQQHFRTLQKFLSGSQVRVCLLTG 345 Query: 686 FRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAM 745 +A + ++A+V++G ID+++GTH +++ V FK LGL+++DE+H+FGV + +++ Sbjct: 346 SGNATHKKNVIAQVSDGGIDLIVGTHAIIEESVSFKKLGLVVIDEQHKFGVLQRLKLRKK 405 Query: 746 RANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF-VREYDSMVVREAILR 804 A+ D+L +TATPIPRTL++ + G D+S++ P R+ VKTF V + + I Sbjct: 406 GASPDVLIMTATPIPRTLSLTLFGDMDISMLDEMPPGRIPVKTFWVSKNKEKAAYDFIRG 465 Query: 805 EILRGGQVYYLYNDVENIQKA--------AERLA-ELVPEARIAIGHGQMRERELERVMN 855 EI +G QV+ +Y VE+ +K AERL E+ PE ++ + HG+M+ E E+ M Sbjct: 466 EISKGKQVFVVYPLVEHSEKLDLKSAITEAERLRNEIFPECKVGLLHGKMKSAEKEQAMA 525 Query: 856 DFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLL 915 DF +R+++LV T IIE GID+P A ++IE A+ FGLAQLHQLRGR+GR Q+Y L Sbjct: 526 DFKERRYDILVSTIIIEVGIDVPNATIMVIEHAERFGLAQLHQLRGRIGRGGKQSYCLLF 585 Query: 916 TPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG----SMETI- 970 A++ + RL + + D GF +A D +RG GE G Q G + I Sbjct: 586 GTPKTALS---RDRLRTMVNTSD---GFKIAEMDFRLRGPGEFFGTRQHGLPELKISNIF 639 Query: 971 -GFSLYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 FSL + ++A + + S E+ +T+V Sbjct: 640 HDFSLLQKARKDAFEIVCRDPSLSAEEHQKIKTKV 674 >UniRef50_Q1D6X0 ATP-dependent DNA helicase RecG n=9 Tax=Bacteria RepID=Q1D6X0_MYXXD Length = 669 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 167/485 (34%), Positives = 265/485 (54%), Gaps = 22/485 (4%) Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE---GFAFKHDR 587 R+ +A L L R+ A +++ + L + +R + G +F Sbjct: 172 RFIHFPPGDADLEALDAHQSPAHRRLAFDELFFLQ---LGMALKRQGVKAEVGISFDVSE 228 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 + ++ PF+ T QA+ + + DM +P M+RLV GDVG GKT VAM +A +A+ Sbjct: 229 PRLAKARNALPFQLTGAQARVVEELCWDMARPEPMNRLVQGDVGSGKTAVAMVSALIALQ 288 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 QVAV+ PT +LA+QH NFR R+ ++S +AK + Q+ VA G++ + Sbjct: 289 AGYQVAVMAPTEILAEQHERNFRKVMEPLGYRVGLVSAAGTAKAKRQVREAVARGEVHLA 348 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 +GTH LLQ+DV F LGL+++DE+HRFGV + + + D+L +TATPIPRTL M + Sbjct: 349 VGTHALLQADVSFDRLGLVVIDEQHRFGVLQRHTLMSKGPKPDVLVMTATPIPRTLAMTL 408 Query: 768 SGMRDLSIIATPPARRLAVKTFV-REYDSMVVREAILREILRGGQVYYLYNDVENIQKA- 825 G DLS+I P R ++T V + +V E++ ++ +G Q Y +Y VE +K Sbjct: 409 YGDLDLSVIDQLPPGRTPIQTRVFNDKQRALVYESVGAQLAKGHQAYVVYPLVEESEKLD 468 Query: 826 -------AERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 E+L ++ P+A++ + HG+M+ E + VM DF +R ++LVCTT++E G+D+P Sbjct: 469 LEDATRGVEKLRKVFPDAKVGLLHGRMKAEEKDSVMEDFREKRLHLLVCTTVVEVGVDVP 528 Query: 879 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLED 938 A+ +++E A+ FGL+QLHQLRGRVGR ++ L+ + + ++ +RL + D Sbjct: 529 NASVMVVESAERFGLSQLHQLRGRVGRGAAASFCHLVAGSAR--SWESAERLTVMEQSSD 586 Query: 939 LGAGFALATHDLEIRGAGELLGEEQSG--SMETIGFSLYMELLENAVDALKAGREPSLED 996 GF +A DLEIRG GE LG QSG + + +LL A + E + Sbjct: 587 ---GFVIAEKDLEIRGPGEFLGTRQSGLPELAVANLARDGDLLSMAQSEARRILEKDPDM 643 Query: 997 LTSQQ 1001 + Sbjct: 644 KAKEN 648 >UniRef50_Q55681 ATP-dependent DNA helicase recG n=5 Tax=Cyanobacteria RepID=RECG_SYNY3 Length = 831 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 149/451 (33%), Positives = 247/451 (54%), Gaps = 20/451 (4%) Query: 568 LLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 L Y Q+ ++ F E + F D PF T Q + +N +L D+ +P M+RLV Sbjct: 373 LQRRYEQKQQQQSAIFTPHGELLEKFSDLLPFRLTQAQQRVVNEILQDLNKPSPMNRLVQ 432 Query: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 GDVG GKT V + A A+ Q A++ PT +LA+QHY F + +E+++ Sbjct: 433 GDVGSGKTVVGVFAILAALQGGYQAALMAPTEVLAEQHYQKLVSWFNLLYLPVELLTGST 492 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 ++ +I A+++ G++ +L+GTH L+Q V F+ LGL+++DE+HRFGV+ + ++ A Sbjct: 493 KTAKRREIHAQLSTGQLPLLVGTHALIQETVNFQRLGLVVIDEQHRFGVQQRAKLLAKGN 552 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT-FVREYDSMVVREAILREI 806 +L++TATPIPRTL + + G ++S I P R + T + + + E I RE+ Sbjct: 553 APHVLSMTATPIPRTLALTLHGDLEVSQIDELPPGRQPIHTSVITAKERPQMYELIRREV 612 Query: 807 LRGGQVYYLYNDVEN---------IQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 857 +G QVY ++ +E +++ ++ P I + HG+++ E E + F Sbjct: 613 AQGRQVYIIFPAIEESEKLDIKAAVEEHKYLTEKIFPNFNIGLLHGRLKSAEKEAALTAF 672 Query: 858 HHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP 917 ++ ++V TT+IE G+D+P A ++IE A+ FGL+QLHQLRGRVGR HQ+Y L+T Sbjct: 673 REKQTEIIVSTTVIEVGVDVPNATVMVIENAERFGLSQLHQLRGRVGRGSHQSYCLLVTN 732 Query: 918 HPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG----SMETIGFS 973 + DA++RL + +D GF +A DL +RG GE LG +QSG ++ ++ Sbjct: 733 SK---SNDARQRLGVMEQSQD---GFFIAEMDLRLRGPGEFLGTKQSGLPDFALASLVED 786 Query: 974 LYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 + LL +P+LE + ++ Sbjct: 787 QEVLLLAREAAETMMVEDPNLEAHPDLKIKL 817 >UniRef50_A9KPH4 ATP-dependent DNA helicase RecG n=8 Tax=Clostridiales RepID=A9KPH4_CLOPH Length = 678 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 166/535 (31%), Positives = 270/535 (50%), Gaps = 49/535 (9%) Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVP---VSSLHLISRYA 533 L++ QP+ L G+ + + +L+ +D K ++P + +LISR A Sbjct: 140 LNVMQPIYALTEGLTNHTVSKAVNT--------VLSQIDDFKEFLPKTIIKEQNLISRKA 191 Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYA---QR------AAKEGFAFK 584 E + P +AR E R + + IY QR + GF Sbjct: 192 AIREIHFP----------KARDTMLEARRRLVFDEFFIYTVILQRIRENKGSILNGFVI- 240 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 ++++ P+E T Q + V D+ +M+RL+ GDVG GKT +A+ A L Sbjct: 241 KEQQEVSELIAGLPYELTNAQKKVWEEVKKDLLCNTSMNRLIQGDVGSGKTILAVLALLL 300 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 N Q +VPT +LA+QH + + + V+IE++ +A + + + ++ Sbjct: 301 VAKNGYQGCFMVPTEVLAKQHLEALQSSLTRFGVKIELLVGSMTASMKRKAYQRIENHEV 360 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 DI++GTH L+Q V + L L+I DE+HRFGV+ +E + N +L ++ATPIPRTL Sbjct: 361 DIIVGTHALIQEKVIYDKLALVITDEQHRFGVKQRESLLNKGDNPHVLVMSATPIPRTLA 420 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREY-DSMVVREAILREILRGGQVYYLYNDVENIQ 823 + + G D+S++ PA RL +K V + I ++I G Q Y + VE + Sbjct: 421 IILYGDLDISVVDELPANRLPIKNCVVDSTYRETAYRFIGKQISEGRQAYVICPMVEESE 480 Query: 824 --------KAAERLAELVPEAR-IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874 + E+L E +P I HG+M+ ++ + +M F VLV TT++E G Sbjct: 481 TMEAENVVEYTEKLKEALPSINGIEYLHGKMKPKDKDDIMGRFASGEIKVLVSTTVVEVG 540 Query: 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIA 934 +++P + ++IE A+ FGLAQLHQLRGRVGR HQ+Y L++ + + +RLE + Sbjct: 541 VNVPNSTVMMIENAERFGLAQLHQLRGRVGRGAHQSYCILVSGSS---SKETMERLEILN 597 Query: 935 SLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYME--LLENAVDALK 987 D GF +A+ DL++RG G+L G QSG +E +Y + +L+ A +A K Sbjct: 598 KSND---GFFIASEDLKLRGPGDLFGIRQSGDLEFKIGDIYQDASVLKAANEAAK 649 >UniRef50_Q1Q824 ATP-dependent DNA helicase RecG n=11 Tax=Gammaproteobacteria RepID=Q1Q824_PSYCK Length = 782 Score = 477 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 156/495 (31%), Positives = 255/495 (51%), Gaps = 21/495 (4%) Query: 532 YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 591 Y ++ L +L + ++ E++ LL Q + Sbjct: 290 YTDAGQQYKLLTQLSARTHAACQRLIIEELTAHQLSLLYRRQQLHQYKAPKCAIQSPLAD 349 Query: 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ 651 + PF+ T Q + + + +DM + M RLV GDVG GKT VA AA A+D+ Q Sbjct: 350 KLFGALPFDLTGAQKRVMRDITADMATSIPMLRLVQGDVGAGKTLVAAGAAGYALDSGWQ 409 Query: 652 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 711 VAV+ PT +LA+QH NF++ F + + ++ ++AK++ + L V+E + +++GTH Sbjct: 410 VAVMAPTEILAEQHLVNFKNWFEPLGIGVGWLAGKQTAKQRREALEAVSENTVQVVVGTH 469 Query: 712 KLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAM---RANVDILTLTATPIPRTLNMAMS 768 L Q V+F LGL+I+DE+HRFGV + + + L +TATPIPRTL M++ Sbjct: 470 ALFQDQVQFAKLGLVIIDEQHRFGVEQRMALTNKGVAGSTPHQLIMTATPIPRTLAMSVY 529 Query: 769 GMRDLSIIATPPARRLAVKTFVREYDSM-VVREAILREILRGGQVYYLYNDVEN------ 821 G D SII P R + T + + V E I G Q Y++ + VE Sbjct: 530 GDMDTSIIDELPPGRTPITTVTIDRNRRDEVIERIAVNCEAGRQAYWVCSLVEESSVLDA 589 Query: 822 --IQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 + E L+E + + RI + HG+M+ + + +M F + ++L+ TT+IE G+D+P Sbjct: 590 QAAEATYEDLSERL-DIRIGLVHGKMKGADKQAIMQAFKAGQLDLLIATTVIEVGVDVPN 648 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 A+ ++IE A+ GL+QLHQLRGRVGR ++Y LL P ++ +RL + D Sbjct: 649 ASLMVIENAERLGLSQLHQLRGRVGRGSTKSYCVLLYQKP--LSETGTERLNVLRDSTD- 705 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 GF +A DLE+RG GELLG+ Q+G+ +G+ L + + + A+ L + Sbjct: 706 --GFVIAQKDLELRGPGELLGKRQTGN---VGYYLADLIRDEQLFAIAQRLAKHLIADPA 760 Query: 1000 QQTEVELRMPSLLPD 1014 ++ +V + +P+ Sbjct: 761 RKADVSQLIHRWMPE 775 >UniRef50_B5YJX3 ATP-dependent DNA helicase RecG n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJX3_THEYD Length = 690 Score = 477 bits (1228), Expect = e-132, Method: Composition-based stats. Identities = 163/484 (33%), Positives = 260/484 (53%), Gaps = 22/484 (4%) Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 ++ NA + L ++ +++ + +L I R ++G +F + + Sbjct: 201 KFVHLPPNNADIKLLNEKTSDFHKRIIFDELFFLQLGILLIKQNRICEKGISFNPEGDLL 260 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 + F ++ PF+ T Q + IN +L DM +P+ M+RL+ GDVG GKT VA+ A A++ Sbjct: 261 KKFLENLPFKLTSAQQKVINEILEDMKKPIPMNRLLQGDVGSGKTVVAVAAMLAAIECGY 320 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Q A++ PT +LA+QHY N P+ + + + + G ++++IGT Sbjct: 321 QAALMAPTEILAEQHYLNISSLLKGLPINTLIYTSS-----YNKHSNLICSGAVNLIIGT 375 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H L+Q D+ FK+LG++++DE+HRFGV + +K N D L +TATPIPRT+ + + G Sbjct: 376 HALIQEDIHFKNLGIVVIDEQHRFGVIQRAMLKKKGLNPDTLVMTATPIPRTMALTVYGD 435 Query: 771 RDLSIIATPPARRLAVKTFVRE-YDSMVVREAILREILRGGQVYYLYNDVENIQKA---- 825 D SI+ PA R + T V E + ++ + I E+ GGQVY +Y +E + Sbjct: 436 LDYSILDELPAGRKPILTKVIEPENKKIIYKMIAEEVSSGGQVYVVYPLIEESEAMDLKS 495 Query: 826 ----AERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 E L +L P+ ++A+ HG+M ++ E +M +F + ++LV TT+IE G+D+P A Sbjct: 496 ATQGYEGLKKLFPQYKVALIHGKMSAKQREEIMKEFRNGDIHILVATTVIEVGVDVPNAT 555 Query: 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGA 941 +II A+ FGLAQLHQLRGRVGR + LL P +T +A+ RL AI + D Sbjct: 556 LMIIIHAERFGLAQLHQLRGRVGRGLRPSKCILL---PYKLTEEAKLRLRAIVNYSD--- 609 Query: 942 GFALATHDLEIRGAGELLGEEQSGSMETIGFSL--YMELLENAVDALKAGREPSLEDLTS 999 GF +A D++IRG GEL G +QSG + L LLE A + + + Sbjct: 610 GFKIAEEDMKIRGPGELFGVKQSGMPDLKVADLIKDQSLLEIARNEAEQLLQEDKNLSLH 669 Query: 1000 QQTE 1003 +T Sbjct: 670 PKTR 673 >UniRef50_C8WW85 ATP-dependent DNA helicase RecG n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW85_ALIAD Length = 678 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 159/427 (37%), Positives = 230/427 (53%), Gaps = 15/427 (3%) Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 R+ E+ +L + A+R G A + F P T Q +A Sbjct: 205 QARRRLVFEEFLLFQIQLQWLRAKREEPAGRAQPVPSDALTAFEALLPGPMTNAQRRACE 264 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 +L D+ +P+ M RL+ GDVG GKT VA+ A F Q A++ PT +LA+QH Sbjct: 265 DILRDLQRPVPMTRLIQGDVGSGKTWVALFACFAVHLARGQSALMAPTEILAEQHARLAH 324 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 + + VR+E+++ + +E+ ++LA +A G + + +GTH LL V+F+DL LL+ DE Sbjct: 325 ELLGSAGVRVELLTGSVTGRERDRVLAGLASGDVSLAVGTHALLSEGVEFRDLALLVTDE 384 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF- 789 +HRFGV + R++ D+L L+ATPIPRTL +A+ G D+SI+ P R V+T Sbjct: 385 QHRFGVAQRARLREKGRAPDVLMLSATPIPRTLALAIYGDMDVSILNELPKGRKPVQTIA 444 Query: 790 VREYDSMVVREAILREILRGGQVYYLYN--------DVENIQKAAERLAELVPEARIAIG 841 V D V I RE+ RG Q Y + DV ++ + ER+ E + R+ + Sbjct: 445 VPSKDDETVLRLIRRELARGHQAYIVAPAIEASERDDVASVTELYERVREHLAGFRVELL 504 Query: 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901 HG+M + ER+M F + LV TT+IE GID+P A + I A+ FGLAQLHQLRG Sbjct: 505 HGRMPSADKERMMRAFRDGDIHALVATTVIEVGIDVPNATVMAIYGAERFGLAQLHQLRG 564 Query: 902 RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961 RVGR H +Y L+ A + A+ R+E + D GF +A DLE+RG GEL G Sbjct: 565 RVGRGPHPSYCLLIH---DASSEAARARIETMLQTND---GFEIAERDLELRGPGELFGL 618 Query: 962 EQSGSME 968 QSG E Sbjct: 619 RQSGLPE 625 >UniRef50_B5Y8L2 Transcription-repair-coupling factor (Trcf) (ATP-dependent helicase mfd), putative n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8L2_COPPD Length = 849 Score = 476 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 189/685 (27%), Positives = 320/685 (46%), Gaps = 53/685 (7%) Query: 403 ARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR 462 ++ + AS R+L+ G F + + + LG +V RR Sbjct: 179 RKLGWPVFDSISAGLASGEKRFLVHGRIRMPFSL--DGFDIHIDREGLGWKVGHRR---- 232 Query: 463 RTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVP 522 +L + L +G+PV+H++ GVG Y G+ +E Y ++Y + L VP Sbjct: 233 ------SLELSWHGLKVGEPVLHVDRGVGVYDGIEYVEG----KPYFSISYKDGHVL-VP 281 Query: 523 VSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582 + + R + LG WSR + ++ + + L + + Q+ + + F Sbjct: 282 LERSQKLVR----VPSTMSIDSLGPARWSRKSRALQQRALKMRSFLENRFKQKKSTQSFT 337 Query: 583 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 642 + D E F SF FE T DQ QA + + + P + L+ G+ G GKTEV MRAA Sbjct: 338 IEPDEEIESAFAQSFQFEETSDQKQATEELHAWLAIPHPEEALIIGESGVGKTEVLMRAA 397 Query: 643 FLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 702 + ++VPT +L Q+ + +R + + +L++ Sbjct: 398 VAVASAGYKAVIVVPTRVLVDQYMAAYSERIQSCGL----------------LLSDDPAL 441 Query: 703 KIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRT 762 DIL+GTH LL+ + L L+I DEE +FGV HK + V ++ +ATPIPRT Sbjct: 442 PWDILVGTHSLLKKQLYDDKLALVIFDEEQKFGVTHKNWFQEHFPWVKVIFSSATPIPRT 501 Query: 763 LNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENI 822 +A G L + P R V F EY +VR+ + E+ RGG V Y++ +E I Sbjct: 502 FFLARRGYVKLIRMHELPYGRQKVTVFADEYSPDLVRKVLSDELDRGGLVIYIHPTIEGI 561 Query: 823 QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 A L ++ +A I + H +M ++ ++ + + ++LV TTI+E G+D+P ANT Sbjct: 562 DLRALELQQMFLDAEIEVLHARMTDKRIKSIFKKLQEGKIDILVATTIMEAGVDLPIANT 621 Query: 883 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAG 942 I++E A H G++Q++QL+GRVGR+ + YAW L P + + R+ + L + Sbjct: 622 IVVEDATHLGVSQMYQLKGRVGRNSVKGYAWFLYPP--TASPATRSRIHSTVKLLNYSDS 679 Query: 943 FALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQT 1002 +ALA D RG GE+ G Q G ++ + V A+ A E + + ++ Sbjct: 680 YALAELDTRYRGIGEIFGIRQHGLVK-----------QEDVFAVDALLEQTYREEETEIV 728 Query: 1003 EVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLD 1062 ++M +P+ +P+ R + K I A TE EL ++ + D G +P+ ++ L Sbjct: 729 SWPIKMN--IPEWILPEP-ERSNLLKDILDADTERELMQLFLMFKDLVGHIPEESKALFA 785 Query: 1063 IARLRQQAQKLGIRKLEGNEKGGVI 1087 + L+ K GI ++ N +G + Sbjct: 786 YSLLKVLGNKRGITMIKFNSRGFQL 810 Score = 61.9 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 6/90 (6%) Query: 124 HGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLD 183 G L++ KG D + + L GY VD + ++A RG +LD++ S+ YRLD Sbjct: 16 EGDPLLITKGT--PMDVVLSFLKLTGYTRVDFCYDSFQWAKRGFVLDIY---SDELYRLD 70 Query: 184 FF-DDEIDSLRVFDVDSQRTLEEVEAINLL 212 F +D ++S+R+ D ++Q ++ E L Sbjct: 71 FDEEDRVESIRIVDSETQMSIRRTEYATLW 100 >UniRef50_D1CCP1 ATP-dependent DNA helicase RecG n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCP1_THET1 Length = 786 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 167/475 (35%), Positives = 244/475 (51%), Gaps = 24/475 (5%) Query: 548 DAWSRARQKAA--EKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQ 605 D AR++ A E + L+ +R +K A + Q F + PF T Q Sbjct: 307 DQLEAARRRLAFDEFLEIQLGALMKQAVRRRSKGALALDVRKPQIGEFLTNLPFRLTGAQ 366 Query: 606 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 665 + I ++ D+ + M+RL+ GDVG GKT VA A A N Q A++ PT +LA+QH Sbjct: 367 ERVIQEIMHDLESDVPMNRLLQGDVGSGKTVVAASALITAFANGYQGAIMAPTEILAEQH 426 Query: 666 YDNFRDRFANWP---VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 722 Y + ++ +++ KE+ + V +G+IDILIGTH L+Q V+F + Sbjct: 427 YKGISRLVSVLGEDAPKVSLLTGSIKGKERDDLYQAVEQGEIDILIGTHALIQEGVRFNN 486 Query: 723 LGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR 782 L + +VDE+HRFGV + ++A N +L +TATPIPR+L + + G DLS++ P Sbjct: 487 LAVCVVDEQHRFGVEQRAALRAKGVNPHLLVMTATPIPRSLALTIYGDLDLSVLDEMPPG 546 Query: 783 RLAVKTF-VREYDSMVVREAILREILRGGQVYYLYNDVENIQKA--------AERLAEL- 832 R ++TF + + E+ RG Q Y + VE +K ERL + Sbjct: 547 RQPIQTFALTPEQRSWAYNFLREEVERGRQAYIICPLVEESEKIEAKAAIEEYERLQKYV 606 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 P+ R+ + HG+M+ RE + VM F VLV T ++E GID+P A ++IE AD FG Sbjct: 607 FPDLRLGLLHGRMKPREKDEVMERFRLGELQVLVSTAVVEVGIDVPNATVMLIEGADRFG 666 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 LAQLHQ RGRVGR ++Y LL+ P + DA+KRLE + D GF LA DL++ Sbjct: 667 LAQLHQFRGRVGRGTEKSYCLLLSDSP---SEDARKRLEIVQECSD---GFVLAEEDLKM 720 Query: 953 RGAGELLGEEQSGSMETIGFSL-YMELLENA--VDALKAGREPSLEDLTSQQTEV 1004 RG GE G QSG + L LLE + A +P L ++ V Sbjct: 721 RGPGEFYGIRQSGQINLKVAKLSDFGLLEETRKIAAELLEDDPDLRHYPKLRSRV 775 >UniRef50_B2KB03 ATP-dependent DNA helicase RecG n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KB03_ELUMP Length = 691 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 156/467 (33%), Positives = 256/467 (54%), Gaps = 35/467 (7%) Query: 574 QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFG 633 Q+ ++ + + F ++ FE T Q + IN + DM L M RL+ GDVG G Sbjct: 241 QKTVQKNYTYHIKTNLLTPFKNNLGFELTHAQKKVINEIFKDMQSTLPMTRLLQGDVGSG 300 Query: 634 KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT 693 KT VA+ A LAV+N Q A++ PT +LA+QH+ + V+ +++ K + Sbjct: 301 KTTVALSAMLLAVENKFQAALMAPTEILAEQHFITITNFLKGLDVKTALLTSSVKGKTKE 360 Query: 694 QILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILT 753 ++LA++AEGKIDIL+GTH +++ +V FK+L + +VDE+HRFGV + R++ +D+LT Sbjct: 361 KLLADLAEGKIDILVGTHSIIEDNVVFKNLKMTVVDEQHRFGVEQRTRLRNKAKEIDMLT 420 Query: 754 LTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVY 813 +TATPIPRTL +A G ++S I P R + TF + E+ +G QVY Sbjct: 421 MTATPIPRTLALAFYGDLEVSAITELPPGRKPITTFSITEG--EAYQKAKSELEKGRQVY 478 Query: 814 YLYNDVENIQKAA--------ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 865 +Y +E +K E++ + ++ + HGQM+ E E+ M DF ++ +VL Sbjct: 479 IVYPLIEESEKLTVKAVKEDIEKIEGVFAPYKVGMLHGQMKRAEKEKAMADFKDKKTDVL 538 Query: 866 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTD 925 V T +IE GID+ A ++I+ A+ FGLA LHQLRGRVGR +++ L+ P ++T Sbjct: 539 VATPVIEVGIDVKNATVMVIQSAERFGLASLHQLRGRVGRGSEESFCLLV---PHNLSTV 595 Query: 926 AQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLY--MELLENAV 983 +++R++ + D GF + D+++RG GE+LG QSG E ++ E+L+ A+ Sbjct: 596 SKERIDILCQTTD---GFKIGERDMQLRGPGEILGTRQSGDFEFKAGDIFKDQEVLKWAI 652 Query: 984 DALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRL-SFYKR 1029 + ++L +Q ++ L +L RL Y++ Sbjct: 653 E--------DRDELLTQDPKLILPEHALF--------KERLIDLYQK 683 >UniRef50_D1VSD3 ATP-dependent DNA helicase RecG n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSD3_9FIRM Length = 674 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 168/595 (28%), Positives = 292/595 (49%), Gaps = 40/595 (6%) Query: 387 FSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICE 446 E R + LL + + D + + F+ +N E Sbjct: 53 IIGEKSTFRCRILSLLDNRNLRKGLSITSFLIEDDSAEAKLIFFNNRFI---KNTIDFGE 109 Query: 447 SDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGM--TTLEAGGI 504 + L+ + R R + T + N+ L GR G+ T Sbjct: 110 TYLIYGKYERFRGRIQLTSPEIEKVDNIRNL-------------GRIRGIYNQTKGLTNN 156 Query: 505 TGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP--LHKL-GGDAWSRARQK-AAEK 560 +YL + D L+ LI +Y+ + A +H+ +++ ++Q+ E+ Sbjct: 157 NIDYL-IDQVIDKNLFEECIPNDLIKKYSLIDKNKAIKNIHRPENRKSYALSKQRLIYEE 215 Query: 561 VRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPL 620 + +L + + + G F + Y F ++ P++ T Q + + + DM Sbjct: 216 LLFFELSILSMQNKNNSSHGIKFNIPNKIY-EFINNLPYKLTSGQEKVLKDITGDMQNGK 274 Query: 621 AMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRI 680 +++RL+ GDVG GKT V++ + +AV N Q A++ PT +LA+QH++NF ++ VRI Sbjct: 275 SVNRLIQGDVGSGKTIVSIILSLVAVLNGYQCAIMAPTEILAKQHFENFNSLLEDYGVRI 334 Query: 681 EMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE 740 +++ +K + +IL A G IDILIGTH L++ DVKF +LGL ++DE+HRFGV + Sbjct: 335 KLLVGSTPSKVKKEILTNTANGMIDILIGTHSLIEDDVKFFNLGLNVIDEQHRFGVIQRS 394 Query: 741 RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF-VREYDSMVVR 799 +++ + ++ATPIPRTL++ + D+SII T P R +KT + Sbjct: 395 KLRYKNDKACNIIMSATPIPRTLSLILYADLDISIIDTMPGGRKNIKTLAINSSQVNEAL 454 Query: 800 EAILREILRGGQVYYLYNDVEN---------IQKAAERLAELVPEARIAIGHGQMREREL 850 I +E+ G Q Y + + +E+ ++K + L + ++A+ HG++ E Sbjct: 455 TFIEKELNAGHQAYVICSLIEDNEDFENLESVEKVFKDLKKFFKNYKLALLHGRLSTDEK 514 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 +VM DF +++ +++V TT+IE GI++ A ++I A+ FGL+ LHQLRGRVGR Q+ Sbjct: 515 NKVMEDFKNRKIDLIVSTTVIEVGINVANATVMMIYNAERFGLSTLHQLRGRVGRGDAQS 574 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 Y L + + + +R++ + D GF +A DLE+RG G++LG QSG Sbjct: 575 YCILF---NNSKSEISWRRMKIM---TDSTDGFYIANKDLELRGFGDILGVRQSG 623 >UniRef50_B0VFU3 ATP-dependent DNA helicase RecG n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFU3_9BACT Length = 699 Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats. Identities = 160/462 (34%), Positives = 242/462 (52%), Gaps = 24/462 (5%) Query: 578 KEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV 637 +G F + ++ PF T Q + + + +DMC M RL+ GDVG GKT V Sbjct: 250 TKGIKFINKKQLTTGVYKKLPFTLTKAQKKVLWEIFADMCSEKQMSRLLQGDVGSGKTVV 309 Query: 638 AMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILA 697 + A LAV+N Q A++ PT +LA+QHY+ + + V++ ++ K + I Sbjct: 310 TLFAMLLAVENGYQSALMAPTEILAEQHYETITNLLKGFEVQVCLLKGGV-YKGKEAIKK 368 Query: 698 EVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTAT 757 +AEG I+IGTH LLQ D+ FK LG VDE+HRFGV + ++ + + D+L L+AT Sbjct: 369 AIAEGSAQIVIGTHALLQKDINFKRLGFACVDEQHRFGVEQRAKLANLAEHPDLLYLSAT 428 Query: 758 PIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDS-MVVREAILREILRGGQVYYLY 816 PIPR+L M + G ++SI+ P R V+T +R V + +E+ G QVY + Sbjct: 429 PIPRSLAMTVYGDLEVSILDELPPTRKPVRTIIRPSSKIDTVYSEVRQELALGRQVYIVC 488 Query: 817 NDVENIQKAA---------ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 VE +K A ++ PE ++ HG+M +E + +M F +LV Sbjct: 489 PLVEESEKIALLDATKLYEYISQKVFPEYPASLLHGRMPVKEKDMIMQKFKAGEIKILVS 548 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 TT+IE G+D+P A+ +I+E A+ FGLAQLHQLRGRVGR QAY +L+ ++ A Sbjct: 549 TTVIEVGVDVPNASVMIVEHAERFGLAQLHQLRGRVGRGSAQAYCYLI--EHSPVSEVAW 606 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK 987 +RL + D GF +A DLE+RG GE+ G EQSG + F+ L + L+ Sbjct: 607 QRLTTMTKTTD---GFIIAEKDLELRGPGEIFGYEQSG-LPVFRFA----NLVRDQEILR 658 Query: 988 AGREPSLEDLTSQQTEVELRMPSLLPDDFIPD--VNTRLSFY 1027 R+ + E + + EL +LL + +L Y Sbjct: 659 LARQDAFE-IVHADPDFELPENALLKKIYFSQFTDKEKLILY 699 >UniRef50_UPI0000E87F40 ATP-dependent DNA helicase n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87F40 Length = 677 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 157/478 (32%), Positives = 240/478 (50%), Gaps = 25/478 (5%) Query: 553 ARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAV 612 ++ +++ +Y Q+ DR + F S F T Q N + Sbjct: 205 RKKLIYDELLAHQLFFRGLYHQQKNYIAKKIIFDRSLHDAFVSSLEFTLTGQQENCFNEI 264 Query: 613 LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDR 672 +SD+ M+RL+ GDVG GKT VA AA A+ N QV + PT +LA+QHY RD Sbjct: 265 MSDLGCSFPMNRLLQGDVGSGKTVVATMAALQAIKNGGQVGFMAPTEILAEQHYIKLRDW 324 Query: 673 FANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH 732 + +E +S SA E+ I + EG+ID+L+GTH L+Q V+FK L L I+DE+H Sbjct: 325 LNPLNISVEFLSGSISAPEKKIIYERLVEGRIDLLVGTHALIQDKVRFKSLALYIIDEQH 384 Query: 733 RFGVRHKERIKA-----MRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787 RFGV + +I++ L ++ATPIPRTL+M+ D+S I P R +K Sbjct: 385 RFGVEQRLQIRSNNKTRAHEEAHQLMMSATPIPRTLSMSYFADMDISTINELPPGRQPIK 444 Query: 788 T-FVREYDSMVVREAILREILRGGQVYYLYNDVEN--------IQKAAERLAELVPEARI 838 T + + + I + G QVY++ +E ++ ++L+ I Sbjct: 445 TKLISDSRRNDLLTIIQKHCNEGNQVYWVCPLIEESEVLQLETVENTFQQLSSFFKSQTI 504 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 A+ HG+M++ E E +M F +LV TT+IE G+D+P A +IIE A+ GL+QLHQ Sbjct: 505 ALIHGKMKQSEKETIMQTFKAGHTQILVATTVIEVGVDVPNATMMIIENAERMGLSQLHQ 564 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 LRGRVGR Q+ L K +T A+ RL I D GF ++ DL++RG GE Sbjct: 565 LRGRVGRGSKQSTCILFYG--KKLTDTAKDRLRIIYENTD---GFKISEEDLKLRGPGEF 619 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 LG +QSG L + + D L + + LT++ +++ + + D+ Sbjct: 620 LGLKQSGLPS-----LKIANINKDDDLLALAKSDAEYLLTTKHNDIQSHLQRWI-SDY 671 >UniRef50_Q02VP1 ATP-dependent DNA helicase RecG n=12 Tax=Lactobacillales RepID=Q02VP1_LACLS Length = 681 Score = 472 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 161/487 (33%), Positives = 257/487 (52%), Gaps = 29/487 (5%) Query: 528 LISRYAGGAEENAPLHKLGGDAWSRARQKAAE-KVRDVAAELLDIYA----QRAAKEGFA 582 LI +Y + A L + +Q K ++ L + A +++ + G Sbjct: 190 LIEKYRLMNRQEAVLAMHFPEDMEAHKQALRRVKFEELFMFQLKLQALKNKEKSGRAGLQ 249 Query: 583 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 642 ++E+ PFE T Q++A+ +L DM P M+RL+ GDVG GKT VA + Sbjct: 250 VIFEQEEIDKKISDLPFELTGGQSRALTEILDDMKSPYHMNRLLQGDVGSGKTVVASLSM 309 Query: 643 FLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 702 + A + Q A++VPT +LA+QH+ N + F + ++ A E+ +ILA++A G Sbjct: 310 YAACLANFQAAIMVPTEILARQHFANLQALFPELQIS--LLVSGLKAAERREILADLASG 367 Query: 703 KIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRT 762 +++GTH L+Q V F +LGL+I DE+HRFGV ++ ++ N D+L +TATPIPRT Sbjct: 368 HTHMVVGTHALIQEGVDFYNLGLVITDEQHRFGVNQRKILREKGQNPDVLMMTATPIPRT 427 Query: 763 LNMAMSGMRDLSIIATPPARRLAVKT-FVREYDSMVVREAILREILRGGQVYYLYNDVE- 820 L + G D+SII P R + T +V+ V + E+ QVY++ +E Sbjct: 428 LAITAFGDMDVSIIDELPKGRQPITTRWVKHEQFSEVLSWVKGEVANDSQVYFISPLIEE 487 Query: 821 -------NIQKAAERLAELVP-EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 N + L + A+I + HG+M+ E +++M +F ++ ++LV TT+IE Sbjct: 488 SETLDLKNAEALFAELNDYFGLFAKIGLLHGKMKNDEKDQIMQEFKAKKLDILVSTTVIE 547 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 G+D+P A ++I AD FGL+QLHQLRGRVGR ++YA L+ + ++R++ Sbjct: 548 VGVDVPNATIMVIMDADRFGLSQLHQLRGRVGRGTKKSYAILVANPK---SDSGKQRMKI 604 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSL--YMELLE----NAVDAL 986 + ++ GF LA DL++RG+GE+ G QSG E I L +LE AV+ Sbjct: 605 MTETQN---GFVLAEEDLKMRGSGEIFGLRQSGLPEFIAADLVNDYNILEVARQEAVEIF 661 Query: 987 KAGREPS 993 K E Sbjct: 662 KKADEFP 668 >UniRef50_D2BIL8 ATP-dependent DNA helicase n=5 Tax=Dehalococcoides RepID=D2BIL8_DEHSV Length = 818 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 154/467 (32%), Positives = 245/467 (52%), Gaps = 44/467 (9%) Query: 574 QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFG 633 + + G A K + F PF+ T Q + + + +D+ + + M RL+ G+VG G Sbjct: 349 RWQEQTGRALKVNLPAIDHFISRLPFKLTDAQTKCLADIKADISKNVPMSRLLQGEVGSG 408 Query: 634 KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA------------------- 674 KT VA+ + F A N Q A + PT +LA+QH+ + FA Sbjct: 409 KTIVAVISLFTAAANGLQGAFMAPTEILAEQHFKSVTRLFASIAKVSTLLDGVHTFEGLL 468 Query: 675 NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRF 734 + P+R+ ++ + ++ + ++ +G+IDI IGTH L+Q +++FK LGL ++DE+HRF Sbjct: 469 DHPLRVALMISDMKSSQKDILKEKIKKGEIDIAIGTHALIQKEIRFKSLGLAVIDEQHRF 528 Query: 735 GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT-FVREY 793 GV + +K+ N IL +TATPIPRTL + + G DLS+I P R ++KT +++ Sbjct: 529 GVEQRSALKSKGLNPHILIMTATPIPRTLALTLYGDLDLSVIDELPPGRQSIKTRWLKPE 588 Query: 794 DSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA---------ELVPEARIAIGHGQ 844 I ++I G Q + + VE + + A E+ PE ++A+ HG+ Sbjct: 589 QRNSAYNFIRKQIEAGRQAFIICPLVEESEAIQAKAATAEYETLSSEVFPEYKVALLHGR 648 Query: 845 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 M E E +M F+ + ++LV T ++E GIDIP A +++E AD FGL+QLHQ RGRVG Sbjct: 649 MNAAEKESIMKHFNEGKMDILVSTPVVEVGIDIPNATVMLVESADRFGLSQLHQFRGRVG 708 Query: 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 964 R Q+Y L +P + Q+RL I S +D GF LA DL +RG GE G QS Sbjct: 709 RGTEQSYCMFLAKNPSLL---GQERLSIIESTQD---GFKLAEEDLRLRGPGEFFGTRQS 762 Query: 965 G-------SMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 G S+ +G L + + A ++ E +L + + + E+ Sbjct: 763 GLPDLRMASISDVG--LLEQARKEATRLFESDPELNLPENKALEEEI 807 >UniRef50_B7JUK9 ATP-dependent DNA helicase RecG n=12 Tax=Bacteria RepID=B7JUK9_CYAP8 Length = 819 Score = 470 bits (1211), Expect = e-130, Method: Composition-based stats. Identities = 144/433 (33%), Positives = 238/433 (54%), Gaps = 18/433 (4%) Query: 568 LLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 L Q+ ++ F + + F PF+ T Q + IN +L D+ M+RLV Sbjct: 361 LQRRQEQKHLEKSAIFLPQGKLIENFNQLLPFKLTNAQQRVINEILEDLNSSTPMNRLVQ 420 Query: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 GDVG GKT VA+ + A+ + Q A++ PT +LA+QHY F + +E+++ Sbjct: 421 GDVGAGKTIVAVFSILAAIQSGYQAALMAPTEVLAEQHYRKLVTWFNLLHLPVELLTGST 480 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 ++ +I +++ G++ +L+GTH L+Q V F+ LGL+++DE+HRFGV+ + ++ A Sbjct: 481 KIAKRREIHSQLETGELPLLVGTHALIQDKVNFQRLGLVVIDEQHRFGVQQRAKLLAKGQ 540 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV-KTFVREYDSMVVREAILREI 806 + +LT+TATPIPRTL + + G D+S I P R + T + + + I RE+ Sbjct: 541 SPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQPIQTTALIGKERTQAYDLIRREV 600 Query: 807 LRGGQVYYLYNDVEN---------IQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 857 +G Q Y ++ +E +++ + + P+ I + HG+M E + ++ +F Sbjct: 601 AQGRQAYIIFPMIEESEKLDVRAAVEEHKKLSETVFPQFNIGLLHGRMSSSEKDEILTNF 660 Query: 858 HHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP 917 + ++V TT+IE G+D+P A ++IE A+ FGL+QLHQLRGRVGR HQ+Y L++ Sbjct: 661 RDNKSQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQLRGRVGRGSHQSYCLLMSN 720 Query: 918 HPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSL--Y 975 T D+++RL + +D GF ++ DL RG G +LG QSG + SL Sbjct: 721 SK---TPDSRQRLSVLEQSQD---GFFISEMDLRFRGPGTVLGTRQSGLPDFALASLVED 774 Query: 976 MELLENAVDALKA 988 E+LE A A + Sbjct: 775 QEILELARSAAEK 787 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=B... 1367 0.0 UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 T... 1274 0.0 UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=ce... 1274 0.0 UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Hal... 1230 0.0 UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=P... 1224 0.0 UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Bet... 1217 0.0 UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Ga... 1212 0.0 UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=She... 1212 0.0 UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Fir... 1208 0.0 UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clo... 1206 0.0 UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Bur... 1200 0.0 UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=B... 1196 0.0 UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Det... 1193 0.0 UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moo... 1192 0.0 UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Nat... 1190 0.0 UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Be... 1188 0.0 UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Del... 1187 0.0 UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 1184 0.0 UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Ba... 1183 0.0 UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xa... 1182 0.0 UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Cl... 1180 0.0 UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=G... 1180 0.0 UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Des... 1179 0.0 UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Des... 1178 0.0 UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Des... 1177 0.0 UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Vei... 1175 0.0 UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clo... 1173 0.0 UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamil... 1170 0.0 UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clo... 1167 0.0 UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostri... 1163 0.0 UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=bet... 1162 0.0 UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Sta... 1155 0.0 UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coproco... 1152 0.0 UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bac... 1150 0.0 UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lac... 1149 0.0 UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Pr... 1148 0.0 UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Aci... 1148 0.0 UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Pep... 1148 0.0 UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Car... 1147 0.0 UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Fr... 1146 0.0 UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=La... 1145 0.0 UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Des... 1141 0.0 UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bac... 1137 0.0 UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Amm... 1137 0.0 UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Des... 1135 0.0 UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamil... 1129 0.0 UniRef50_B6ISZ9 Transcription-repair coupling factor n=96 Tax=Al... 1129 0.0 UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=St... 1128 0.0 UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Aci... 1125 0.0 UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Aci... 1118 0.0 UniRef50_D2LDK6 Transcription-repair coupling factor n=1 Tax=Rho... 1118 0.0 UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic... 1114 0.0 UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lac... 1114 0.0 UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syn... 1113 0.0 UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Ros... 1109 0.0 UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotro... 1109 0.0 UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 ... 1108 0.0 UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chl... 1106 0.0 UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttle... 1104 0.0 UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clo... 1103 0.0 UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=The... 1103 0.0 UniRef50_B0U870 Transcription-repair coupling factor n=86 Tax=Al... 1102 0.0 UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostri... 1102 0.0 UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Rum... 1102 0.0 UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostri... 1101 0.0 UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 ... 1101 0.0 UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71... 1100 0.0 UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Fir... 1100 0.0 UniRef50_A6NQ58 Putative uncharacterized protein n=1 Tax=Bactero... 1099 0.0 UniRef50_Q6ARL4 Related to transcription-repair coupling factor ... 1097 0.0 UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myx... 1097 0.0 UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostri... 1096 0.0 UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostri... 1095 0.0 UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostri... 1094 0.0 UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Her... 1094 0.0 UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Ori... 1094 0.0 UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sph... 1089 0.0 UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=del... 1086 0.0 UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=The... 1081 0.0 UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Ana... 1081 0.0 UniRef50_D2RAQ2 Transcription-repair coupling factor n=6 Tax=Act... 1079 0.0 UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Aci... 1078 0.0 UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Vei... 1075 0.0 UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syn... 1074 0.0 UniRef50_Q0F085 Transcription-repair coupling factor n=1 Tax=Mar... 1074 0.0 UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clo... 1072 0.0 UniRef50_C9KMW0 Transcription-repair coupling factor n=3 Tax=Vei... 1072 0.0 UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bac... 1070 0.0 UniRef50_A5V6G5 Transcription-repair coupling factor n=2 Tax=Sph... 1067 0.0 UniRef50_Q6MGN1 Transcription-repair coupling factor n=2 Tax=Pro... 1066 0.0 UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Bra... 1066 0.0 UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax... 1066 0.0 UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Co... 1065 0.0 UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Ana... 1064 0.0 UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamil... 1064 0.0 UniRef50_C4LHL4 Transcription-repair coupling factor n=5 Tax=Bac... 1063 0.0 UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclass... 1060 0.0 UniRef50_C8PBN6 Transcription-repair-coupling factor n=1 Tax=Lac... 1060 0.0 UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Pep... 1059 0.0 UniRef50_Q04H97 Transcription-repair coupling factor (Superfamil... 1059 0.0 UniRef50_A9G788 Transcription-repair coupling factor n=3 Tax=Pro... 1057 0.0 UniRef50_A5EV48 Transcription-repair coupling factor n=2 Tax=Car... 1056 0.0 UniRef50_B0VGK6 Putative transcription-repair coupling factor n=... 1051 0.0 UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Lep... 1048 0.0 UniRef50_B2S2U1 Transcription-repair coupling factor n=4 Tax=Tre... 1046 0.0 UniRef50_D0LU01 Transcription-repair coupling factor n=1 Tax=Hal... 1044 0.0 UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cy... 1043 0.0 UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Ato... 1042 0.0 UniRef50_C6X2W6 Transcription-repair coupling factor n=17 Tax=Ba... 1038 0.0 UniRef50_Q11PH6 Transcription-repair coupling factor n=5 Tax=Bac... 1037 0.0 UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerof... 1037 0.0 UniRef50_A6CB65 Transcription-repair coupling factor n=2 Tax=Pla... 1036 0.0 UniRef50_C6A8D1 Transcription-repair coupling factor n=17 Tax=Ac... 1035 0.0 UniRef50_C7PET5 Transcription-repair coupling factor n=1 Tax=Chi... 1034 0.0 UniRef50_A4A0Y1 Transcription-repair coupling factor n=1 Tax=Bla... 1032 0.0 UniRef50_Q1Q1A4 Similar to transcription-repair coupling factor ... 1032 0.0 UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rot... 1030 0.0 UniRef50_Q0B0S4 Transcription-repair coupling factor-superfamily... 1030 0.0 UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bac... 1030 0.0 UniRef50_Q1RI82 Transcription-repair-coupling factor n=16 Tax=Ri... 1028 0.0 UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Ac... 1027 0.0 UniRef50_Q7UQN7 Transcription-repair coupling factor n=1 Tax=Rho... 1027 0.0 UniRef50_C9LLX5 Transcription-repair coupling factor n=1 Tax=Dia... 1024 0.0 UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax... 1023 0.0 UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cya... 1022 0.0 UniRef50_B5YFB2 Transcription-repair coupling factor n=2 Tax=Dic... 1021 0.0 UniRef50_UPI00016C571B transcription-repair coupling factor n=1 ... 1021 0.0 UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=... 1021 0.0 UniRef50_C2KSG9 Possible transcription-repair coupling factor n=... 1020 0.0 UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Cor... 1019 0.0 UniRef50_A6L2L5 Transcription-repair coupling factor n=49 Tax=Ba... 1019 0.0 UniRef50_C6XGB7 Transcription-repair coupling factor n=1 Tax=Can... 1018 0.0 UniRef50_C5NXX8 Transcription-repair coupling factor n=1 Tax=Gem... 1017 0.0 UniRef50_Q2S6G5 Transcription-repair coupling factor n=2 Tax=Rho... 1014 0.0 UniRef50_B6AN99 Transcription-repair coupling factor n=2 Tax=Lep... 1014 0.0 UniRef50_B8IZ90 Transcription-repair coupling factor n=3 Tax=Des... 1012 0.0 UniRef50_A6GBX4 Transcription-repair coupling factor n=1 Tax=Ple... 1012 0.0 UniRef50_C8P217 Transcription-repair-coupling factor (ATP-depend... 1009 0.0 UniRef50_A1ZRM8 Transcription-repair coupling factor n=2 Tax=Bac... 1009 0.0 UniRef50_D1R5W0 Putative uncharacterized protein n=1 Tax=Parachl... 1009 0.0 UniRef50_C9RNX3 Transcription-repair coupling factor n=1 Tax=Fib... 1005 0.0 UniRef50_A9NE83 Transcription-repair coupling factor (Superfamil... 1000 0.0 UniRef50_D2R0K5 Transcription-repair coupling factor n=1 Tax=Pir... 999 0.0 UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Act... 999 0.0 UniRef50_A4E9V3 Putative uncharacterized protein n=3 Tax=Collins... 999 0.0 UniRef50_Q72AT7 Transcription-repair coupling factor n=5 Tax=Des... 998 0.0 UniRef50_C0BHL1 Transcription-repair coupling factor n=1 Tax=Fla... 997 0.0 UniRef50_Q6MB04 Probable transcription-repair coupling factor mf... 995 0.0 UniRef50_D1PXI7 Transcription-repair coupling factor n=7 Tax=Bac... 993 0.0 UniRef50_C0GM56 Transcription-repair coupling factor n=1 Tax=Des... 993 0.0 UniRef50_C5VMF4 Transcription-repair coupling factor n=2 Tax=Pre... 992 0.0 UniRef50_D2MMW5 Transcription-repair coupling factor n=2 Tax=Ery... 991 0.0 UniRef50_A2BWG1 Transcriptional-repair coupling factor n=11 Tax=... 990 0.0 UniRef50_UPI0001C317DD transcription-repair coupling factor n=1 ... 989 0.0 UniRef50_C9LF18 Transcription-repair coupling factor n=1 Tax=Pre... 988 0.0 UniRef50_C9MMN8 Transcription-repair coupling factor n=1 Tax=Pre... 987 0.0 UniRef50_B8DPF5 Transcription-repair coupling factor n=6 Tax=Des... 986 0.0 UniRef50_C6HVP9 Transcription-repair coupling factor n=1 Tax=Lep... 966 0.0 UniRef50_B5JG36 Transcription-repair coupling factor n=1 Tax=Ver... 962 0.0 UniRef50_C1SMC7 Transcription-repair coupling factor Mfd n=1 Tax... 955 0.0 UniRef50_C1A9L3 Transcription-repair coupling factor n=1 Tax=Gem... 951 0.0 UniRef50_Q1AXK2 Transcription-repair coupling factor n=1 Tax=Rub... 951 0.0 UniRef50_Q5PBQ9 Transcription repair coupling factor n=7 Tax=Ana... 948 0.0 UniRef50_A6DFV9 Transcription-repair coupling factor, MFD (Super... 948 0.0 UniRef50_C7M0K8 Transcription-repair coupling factor n=1 Tax=Aci... 939 0.0 UniRef50_A1BEU9 Transcription-repair coupling factor n=12 Tax=Ch... 935 0.0 UniRef50_Q2GHL2 Transcription-repair coupling factor n=5 Tax=can... 935 0.0 UniRef50_D1N873 Transcription-repair coupling factor n=1 Tax=Vic... 934 0.0 UniRef50_B1H078 Transcription-repair coupling factor Mfd n=1 Tax... 933 0.0 UniRef50_O51568 Transcription-repair-coupling factor n=24 Tax=Bo... 932 0.0 UniRef50_Q255X7 Transcription-repair coupling factor-superfamily... 931 0.0 UniRef50_C7H0W1 Transcription-repair coupling factor n=1 Tax=Eub... 916 0.0 UniRef50_B1ZYU7 Transcription-repair coupling factor n=2 Tax=Opi... 908 0.0 UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=ce... 871 0.0 UniRef50_C1TQS1 Transcription-repair coupling factor Mfd n=1 Tax... 870 0.0 UniRef50_C7CIQ8 DEAD/DEAH box helicase domain protein n=9 Tax=Al... 861 0.0 UniRef50_P57381 Transcription-repair-coupling factor n=4 Tax=Buc... 851 0.0 UniRef50_B9KVH0 DEAD/DEAH box helicase domain protein n=2 Tax=Rh... 845 0.0 UniRef50_C6B9D3 DEAD/DEAH box helicase domain protein n=1 Tax=Rh... 844 0.0 UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superf... 841 0.0 UniRef50_Q1YKV9 Putative transcription-repair coupling factor n=... 839 0.0 UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Ta... 830 0.0 UniRef50_C7NE08 Transcription-repair coupling factor n=4 Tax=Fus... 824 0.0 UniRef50_D1B5L3 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 819 0.0 UniRef50_B5YL15 Transcription-repair coupling factor n=1 Tax=The... 819 0.0 UniRef50_C5F1R4 Transcription-repair coupling factor n=2 Tax=Hel... 811 0.0 UniRef50_Q89L81 Bll4667 protein n=2 Tax=Bradyrhizobium RepID=Q89... 800 0.0 UniRef50_Q5SJW3 Transcription-repair coupling factor n=3 Tax=The... 797 0.0 UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Cht... 796 0.0 UniRef50_Q83N19 Transcription-repair coupling factor n=4 Tax=Bac... 792 0.0 UniRef50_UPI0001745840 transcription-repair coupling factor n=1 ... 791 0.0 UniRef50_A4YQE5 Putative transcription repair coupling factor n=... 790 0.0 UniRef50_B2KBP0 DEAD/DEAH box helicase domain protein n=1 Tax=El... 789 0.0 UniRef50_C3XNZ2 Transcription-repair coupling factor n=1 Tax=Hel... 789 0.0 UniRef50_Q89AK2 Transcription-repair-coupling factor n=3 Tax=Gam... 787 0.0 UniRef50_Q1J0Y7 Transcription factor CarD n=3 Tax=Deinococcus Re... 773 0.0 UniRef50_D1Y8J9 Transcription-repair-coupling factor n=2 Tax=Syn... 772 0.0 UniRef50_Q8D3A2 Mfd protein n=1 Tax=Wigglesworthia glossinidia e... 771 0.0 UniRef50_C1XT24 Transcription-repair coupling factor (Superfamil... 768 0.0 UniRef50_C3XFZ1 Transcription-repair coupling factor n=2 Tax=Cam... 756 0.0 UniRef50_C3WG56 Transcription-repair coupling factor n=6 Tax=Fus... 753 0.0 UniRef50_D1B3F9 Transcription-repair coupling factor n=14 Tax=Ca... 745 0.0 UniRef50_A9BHZ6 DEAD/DEAH box helicase domain protein n=1 Tax=Pe... 739 0.0 UniRef50_C5CIP9 Transcription-repair coupling factor n=1 Tax=Kos... 737 0.0 UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaeroba... 733 0.0 UniRef50_A8F4U5 DEAD/DEAH box helicase domain protein n=1 Tax=Th... 732 0.0 UniRef50_B9K8D6 Transcription-repair coupling factor n=1 Tax=The... 729 0.0 UniRef50_A7HNV8 DEAD/DEAH box helicase domain protein n=3 Tax=Th... 724 0.0 UniRef50_A8ERW1 Transcription-repair coupling factor n=13 Tax=Ep... 720 0.0 UniRef50_B1LBI8 DEAD/DEAH box helicase domain protein n=5 Tax=Th... 719 0.0 UniRef50_C0QQC7 Transcription-repair-coupling factor (Trcf) (ATP... 717 0.0 UniRef50_Q8RH90 Transcription-repair coupling factor n=12 Tax=Fu... 708 0.0 UniRef50_Q9ZJ57 Transcription-repair-coupling factor n=19 Tax=He... 706 0.0 UniRef50_B2V9E1 DEAD/DEAH box helicase domain protein n=2 Tax=Su... 698 0.0 UniRef50_D1AW65 DEAD/DEAH box helicase domain protein n=1 Tax=St... 685 0.0 UniRef50_Q4HTG2 Transcription-repair coupling factor n=2 Tax=Cam... 680 0.0 UniRef50_A9S9T2 Predicted protein n=1 Tax=Physcomitrella patens ... 671 0.0 UniRef50_Q2R377 CarD-like transcriptional regulator family prote... 643 0.0 UniRef50_B9GNF6 Predicted protein n=2 Tax=rosids RepID=B9GNF6_POPTR 642 0.0 UniRef50_A4RX81 Predicted protein n=4 Tax=Mamiellales RepID=A4RX... 620 e-176 UniRef50_B7GBS8 Predicted protein n=2 Tax=Bacillariophyta RepID=... 602 e-170 UniRef50_B7F5N3 cDNA clone:J013044D20, full insert sequence n=6 ... 588 e-166 UniRef50_A5GF54 ATP-dependent DNA helicase RecG n=15 Tax=Bacteri... 557 e-157 UniRef50_B8E2R9 ATP-dependent DNA helicase RecG n=1 Tax=Dictyogl... 557 e-156 UniRef50_B5Y798 ATP-dependent DNA helicase RecG n=1 Tax=Coprothe... 554 e-155 UniRef50_Q1D6X0 ATP-dependent DNA helicase RecG n=9 Tax=Bacteria... 552 e-155 UniRef50_B5YEA4 ATP-dependent DNA helicase RecG n=1 Tax=Dictyogl... 551 e-155 UniRef50_C9RAM3 ATP-dependent DNA helicase RecG n=2 Tax=Clostrid... 547 e-153 UniRef50_C5CH96 ATP-dependent DNA helicase RecG n=2 Tax=Thermoto... 546 e-153 UniRef50_B5YJX3 ATP-dependent DNA helicase RecG n=1 Tax=Thermode... 544 e-153 UniRef50_Q6MKR1 ATP-dependent DNA helicase RecG n=1 Tax=Bdellovi... 544 e-152 UniRef50_D1BMY0 ATP-dependent DNA helicase RecG n=3 Tax=Veillone... 543 e-152 UniRef50_D1VSD3 ATP-dependent DNA helicase RecG n=1 Tax=Peptonip... 539 e-151 UniRef50_Q55681 ATP-dependent DNA helicase recG n=5 Tax=Cyanobac... 538 e-151 UniRef50_B0VFU3 ATP-dependent DNA helicase RecG n=1 Tax=Candidat... 537 e-150 UniRef50_A3DEY1 ATP-dependent DNA helicase RecG n=25 Tax=Clostri... 536 e-150 UniRef50_D1CCP1 ATP-dependent DNA helicase RecG n=1 Tax=Thermoba... 535 e-150 UniRef50_C6VPY9 ATP-dependent DNA helicase RecG n=34 Tax=Bacteri... 535 e-150 UniRef50_Q2S5W6 ATP-dependent DNA helicase RecG n=2 Tax=Rhodothe... 535 e-150 UniRef50_C0BP78 Transcription factor CarD n=1 Tax=Flavobacteria ... 534 e-150 UniRef50_C1SJP0 ATP-dependent DNA helicase RecG n=1 Tax=Denitrov... 534 e-149 UniRef50_Q1PZ44 Similar to DNA helicase n=1 Tax=Candidatus Kuene... 532 e-149 UniRef50_B7JUK9 ATP-dependent DNA helicase RecG n=12 Tax=Bacteri... 531 e-149 UniRef50_Q54900 ATP-dependent DNA helicase recG n=129 Tax=Bacill... 531 e-149 UniRef50_D2BIL8 ATP-dependent DNA helicase n=5 Tax=Dehalococcoid... 529 e-148 UniRef50_C0EVE3 Putative uncharacterized protein n=1 Tax=Eubacte... 529 e-148 UniRef50_C8WW85 ATP-dependent DNA helicase RecG n=2 Tax=Alicyclo... 528 e-148 UniRef50_Q1Q824 ATP-dependent DNA helicase RecG n=11 Tax=Gammapr... 527 e-148 UniRef50_B2KB03 ATP-dependent DNA helicase RecG n=1 Tax=Elusimic... 526 e-147 UniRef50_B0MQ01 Putative uncharacterized protein n=1 Tax=Eubacte... 526 e-147 Sequences not found previously or not previously below threshold: >UniRef50_P30958 Transcription-repair-coupling factor n=202 Tax=Bacteria RepID=MFD_ECOLI Length = 1148 Score = 1367 bits (3538), Expect = 0.0, Method: Composition-based stats. Identities = 1148/1148 (100%), Positives = 1148/1148 (100%) Query: 1 MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60 MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS Sbjct: 1 MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60 Query: 61 QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH Sbjct: 61 QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY Sbjct: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD Sbjct: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL 300 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL Sbjct: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL 300 Query: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 360 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD Sbjct: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 360 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD Sbjct: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 Query: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG Sbjct: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA Sbjct: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE Sbjct: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL Sbjct: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF Sbjct: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP Sbjct: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI Sbjct: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR Sbjct: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG Sbjct: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV Sbjct: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG Sbjct: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 Query: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1140 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR Sbjct: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1140 Query: 1141 ELEENAIA 1148 ELEENAIA Sbjct: 1141 ELEENAIA 1148 >UniRef50_B3PFQ1 Transcription-repair coupling protein Mfd n=58 Tax=Gammaproteobacteria RepID=B3PFQ1_CELJU Length = 1184 Score = 1274 bits (3297), Expect = 0.0, Method: Composition-based stats. Identities = 637/1139 (55%), Positives = 845/1139 (74%), Gaps = 7/1139 (0%) Query: 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ----MVMN 69 G ++ G L G+A A + A +AG ++IAPD +A+RL E+S FT V++ Sbjct: 47 GNRQYWGNLHGSAQALAIVNAARNYAGLSLVIAPDTSSAIRLQTELSFFTGGDEQLPVLH 106 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 LADWETLPYDS SPHQDIIS RL TLY+LPT +RG+L+VP+ TL+QR+ P S+L G++L+ Sbjct: 107 LADWETLPYDSISPHQDIISERLRTLYRLPTTRRGILVVPITTLLQRLMPRSYLLGNSLM 166 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 + G++L D LR L+ AGY VD V EHGE+A RGALLD+FPMGS+LPYR+D FDDE+ Sbjct: 167 LAVGEQLDIDQLRHNLERAGYHAVDTVYEHGEFAVRGALLDIFPMGSDLPYRIDLFDDEV 226 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVS 249 ++LR FD ++Q T+++VE I LLPA EFP +K I LF+ QW + F+V ++Q +S Sbjct: 227 ETLRTFDPETQMTIDKVEKIQLLPAKEFPLNKPGINLFKQQWLERFDVNHKECPVFQDIS 286 Query: 250 KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVD 309 G P G+EY+ PLFF + LF Y P NTL+ G+ E SAE F + L R+E+R VD Sbjct: 287 AGISPPGVEYYLPLFF-DSCSNLFDYLPQNTLVYALGNFEKSAENFWLELLRRYESRRVD 345 Query: 310 PMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKA 369 P+RPLLPP+ ++L +DEL+++LK + R + + L +A + N + P+L ++AQ + Sbjct: 346 PLRPLLPPKDIYLSIDELYTQLKPYSRTFISNDILEERAGHYNFASCQPPNLPIRAQAEQ 405 Query: 370 PLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEA--SDRGRYLMI 427 PL A+ FL + G V+F ES GRRE L ELL RI++ P S + I Sbjct: 406 PLAAIEAFLMEYHGRVLFCAESAGRRETLLELLGRIRVRPAPAESWQAFLSSKESIAITI 465 Query: 428 GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLE 487 E G + LI ES L GER+ ++R+ + N + +++NL EL IG PVVH++ Sbjct: 466 APLEQGLQQQQPDTVLIAESQLFGERIQQQRRRKQAQDNSELVVKNLTELKIGAPVVHID 525 Query: 488 HGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGG 547 HGVGRY G+ T+ T E+L L YA+DAKLYVPV+SLHLISRY+G ++ APLHKLG Sbjct: 526 HGVGRYRGLETITVDNQTNEFLTLEYADDAKLYVPVTSLHLISRYSGAEDDLAPLHKLGS 585 Query: 548 DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQ 607 ++W +A++KAAE++RD AAELL++YA+RAA++GFAF + Y F SFPFE TPDQ + Sbjct: 586 ESWQKAKRKAAEQIRDTAAELLEVYARRAARKGFAFPDPQTAYAAFSASFPFEETPDQQR 645 Query: 608 AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYD 667 AI AV+ DM P MDRLVCGDVGFGKTEVAMRAAF+A KQVA+L PTTLLAQQHY+ Sbjct: 646 AIEAVVKDMLSPKPMDRLVCGDVGFGKTEVAMRAAFVASHAGKQVAILAPTTLLAQQHYE 705 Query: 668 NFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 727 + +DRFA WP+ IE++SRFR+ KE Q+L +AEGK+DI++GTHKLLQ D+KFK+LGLLI Sbjct: 706 SLKDRFAEWPITIEVLSRFRTTKEVNQVLERLAEGKVDIIVGTHKLLQPDIKFKNLGLLI 765 Query: 728 VDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK 787 +DEEHRFGVR KE+IKA+RA +DILTLTATPIPRTLNM+M+G+RDLSIIATPPARRL+VK Sbjct: 766 IDEEHRFGVRQKEQIKALRAEIDILTLTATPIPRTLNMSMAGIRDLSIIATPPARRLSVK 825 Query: 788 TFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRE 847 TFVR YD V++EAILREILRGGQVYYL+N+V+ I+K A L EL+PEARIA+GHGQMRE Sbjct: 826 TFVRTYDEAVIKEAILREILRGGQVYYLHNEVDTIEKVARELQELIPEARIAVGHGQMRE 885 Query: 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 R+LERVM+DF+H+RFN++VCTTIIETGIDIP+ANTIII RAD FGLAQLHQLRGRVGRSH Sbjct: 886 RDLERVMSDFYHKRFNIMVCTTIIETGIDIPSANTIIINRADKFGLAQLHQLRGRVGRSH 945 Query: 908 HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSM 967 HQAYA+LLTP +AMT DA KRLEAI++ EDLGAGF LAT+D+EIRGAGELLGEEQSG + Sbjct: 946 HQAYAYLLTPERRAMTDDAVKRLEAISAAEDLGAGFTLATYDMEIRGAGELLGEEQSGQI 1005 Query: 968 ETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFY 1027 +TIGFSLYME+L+ AV A++ G++ +E + ++ LR+P+L+P D++PDV+ RL Y Sbjct: 1006 QTIGFSLYMEMLDRAVKAIRQGKQADIEQALKESIDINLRIPALIPSDYLPDVHLRLVMY 1065 Query: 1028 KRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVI 1087 KR+A+A+ L +++VE+IDRFGLLPD + L + +++ A++LGI K+E N +GG I Sbjct: 1066 KRLANAENAESLRDLQVEMIDRFGLLPDAVKNLFRVTQIKITAEQLGITKIEANSRGGKI 1125 Query: 1088 EFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENA 1146 EF+ V+P ++ L+Q QP+ Y+L+G +LKF QDL + R++ + + + L + Sbjct: 1126 EFSGATGVDPLQIVKLVQSQPRVYKLEGANQLKFAQDLESTEKRLQTLSELLDYLTPKS 1184 >UniRef50_P45128 Transcription-repair-coupling factor n=72 Tax=cellular organisms RepID=MFD_HAEIN Length = 1146 Score = 1274 bits (3296), Expect = 0.0, Method: Composition-based stats. Identities = 732/1142 (64%), Positives = 927/1142 (81%), Gaps = 3/1142 (0%) Query: 4 QYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT 63 ++ +P + + ++LG + A A ++EI+E++ V++ PD ++A+RL +S+ + Sbjct: 5 FFQPDIPTQPNDHKILGNVLPGADALAISEISEQNQNLTVVVTPDTRSAVRLSRVLSELS 64 Query: 64 DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFL 123 Q V DWETLPYD+FSPHQ+IISSRLS L+ L ++G+ ++P++TLMQR+CP +L Sbjct: 65 SQDVCLFPDWETLPYDTFSPHQEIISSRLSALFHLQNAKKGIFLLPISTLMQRLCPPQYL 124 Query: 124 HGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLD 183 + L++KKG RL D +R QL++AGYR V+QV+EHGEYA RGALLDLFPMGS +P+RLD Sbjct: 125 QHNVLLIKKGDRLVIDKMRLQLEAAGYRAVEQVLEHGEYAVRGALLDLFPMGSAVPFRLD 184 Query: 184 FFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF-EVKRDPE 242 FFDDEIDS+R FDVD+QRTL+E+ +INLLPAHEFPTD IE FR+Q+R+TF E++RDPE Sbjct: 185 FFDDEIDSIRTFDVDTQRTLDEISSINLLPAHEFPTDDKGIEFFRAQFRETFGEIRRDPE 244 Query: 243 HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLAR 302 HIYQQ+SKGTL +GIEYWQPLFF+E + LF Y P TL V+ + +T ERF D R Sbjct: 245 HIYQQISKGTLISGIEYWQPLFFAE-MATLFDYLPEQTLFVDMENNQTQGERFYQDAKQR 303 Query: 303 FENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLA 362 +E R VDPMRPLL P+ LWL VDE+ LK++PR+ K E + + NL LP++ Sbjct: 304 YEQRKVDPMRPLLSPEKLWLNVDEVNRRLKSYPRITFKAEKVRSSVRQKNLPVAALPEVT 363 Query: 363 VQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG 422 +Q+QQK PL LR+F+E F G V+FSVE+EGRRE L +LL+ +K+ P++I L++ + Sbjct: 364 IQSQQKEPLGQLRQFIEHFKGNVLFSVETEGRRETLLDLLSPLKLKPKQIQSLEQIENEK 423 Query: 423 RYLMIGAAEHGFVDTV-RNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQ 481 L++ + E GF+ +A+I E++LLG+R+ +R +D R+TINPDTL+RNLAEL IGQ Sbjct: 424 FSLLVSSLEQGFIIEQSLPVAIIGEANLLGKRIQQRSRDKRKTINPDTLVRNLAELKIGQ 483 Query: 482 PVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541 PVVHL+HGVGRY G+ TL+ GGI EYL+L YAN++KLYVPV+SLHLISRY GG++E+AP Sbjct: 484 PVVHLDHGVGRYGGLVTLDTGGIKAEYLLLNYANESKLYVPVTSLHLISRYVGGSDESAP 543 Query: 542 LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFET 601 LHKLG +AW+++RQKAAEK+RDVAAELLD+YAQR AK+GFAFK+DRE++Q F +FPFE Sbjct: 544 LHKLGNEAWAKSRQKAAEKIRDVAAELLDVYAQREAKKGFAFKYDREEFQQFSATFPFEE 603 Query: 602 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLL 661 T DQ AINAV+SDMCQP AMDRLVCGDVGFGKTEVAMRAAFLAV NHKQVAVLVPTTLL Sbjct: 604 TYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVLVPTTLL 663 Query: 662 AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 721 AQQHY+NF+DRFAN PV +E++SRF++AKEQ QIL +AEGK+DILIGTHKL+QSDVKF Sbjct: 664 AQQHYENFKDRFANLPVNVEVLSRFKTAKEQKQILENLAEGKVDILIGTHKLIQSDVKFN 723 Query: 722 DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781 DLGLLI+DEEHRFGV KE+IK +RAN+DILTLTATPIPRTLNMAM+G+RDLSII+TPPA Sbjct: 724 DLGLLIIDEEHRFGVGQKEKIKQLRANIDILTLTATPIPRTLNMAMNGIRDLSIISTPPA 783 Query: 782 RRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 841 RRL++KTFVR+ D +VVREAILREILRGGQVYYL+NDV +I+ AE+L LVPEAR+ +G Sbjct: 784 RRLSIKTFVRQNDDLVVREAILREILRGGQVYYLHNDVASIENTAEKLTALVPEARVIVG 843 Query: 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901 HGQMRERELERVM+DF+HQR+NVLVC+TIIETGID+PTANTIIIERADHFGLAQLHQLRG Sbjct: 844 HGQMRERELERVMSDFYHQRYNVLVCSTIIETGIDVPTANTIIIERADHFGLAQLHQLRG 903 Query: 902 RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961 RVGRSHHQAYA+LLTP PK MT DA++RL+A+ +L++LGAGF LATHDLEIRGAGELLG Sbjct: 904 RVGRSHHQAYAYLLTPPPKMMTKDAERRLDALENLDNLGAGFILATHDLEIRGAGELLGN 963 Query: 962 EQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVN 1021 EQSG +E+IGFSLYMELL+ AV ALK GREPSLE+LT QQ ++ELR+P+LLPDD++ DVN Sbjct: 964 EQSGQIESIGFSLYMELLDAAVKALKEGREPSLEELTQQQADIELRVPALLPDDYLGDVN 1023 Query: 1022 TRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGN 1081 RLSFYKRIA+A+++ EL+E+KVELIDRFGLLPD + LL I LR + L + +++ Sbjct: 1024 MRLSFYKRIAAAESKAELDELKVELIDRFGLLPDATKNLLQITELRLLVEPLNVVRIDAG 1083 Query: 1082 EKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRE 1141 +GG IEF+ K VNP I L+QK+P YR DGP + KF++DLS+ K R+E+V +R Sbjct: 1084 TQGGFIEFSAKAQVNPDKFIQLIQKEPIVYRFDGPFKFKFMKDLSDNKVRLEFVVDLLRT 1143 Query: 1142 LE 1143 + Sbjct: 1144 IA 1145 >UniRef50_B8D013 Transcription-repair coupling factor n=1 Tax=Halothermothrix orenii H 168 RepID=B8D013_HALOH Length = 1170 Score = 1230 bits (3182), Expect = 0.0, Method: Composition-based stats. Identities = 412/1156 (35%), Positives = 662/1156 (57%), Gaps = 33/1156 (2%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQFTDQMVMN 69 + G+ + + G A + I ++ V+++ D + R ++++ ++ V+ Sbjct: 20 INQGQNLFIEGMPGNRFAFITGNILQKIDKTVLMVTYDTVHLNRYYEDLIRMMPEEKVLL 79 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQ-LPTMQRGVLIVPVNTLMQRVCPHSFLHGHAL 128 + E LP++ P + R+ L + + VL+ L++++ P S + Sbjct: 80 YPESEVLPHEQIVPDLAETAQRIRVLQSVITDKKPAVLLTTATALLRKMIPVSTFKKYIF 139 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 ++ GQ + + +L +GY V+ V GE++ RG ++D+FP+ P+R++ F DE Sbjct: 140 SLQVGQEIDLNKFTEKLRISGYNRVEMVENPGEFSIRGGIIDIFPLSVNKPFRIELFGDE 199 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE------------ 236 ID++R F+ +QR+ +E + + PA E I+ + F Sbjct: 200 IDTIREFEPATQRSRRSLEKVFISPAREIIVSPRQIKKAIPAIKSDFNDTINTLYENNYK 259 Query: 237 -----VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETS 291 ++ + +++++ G E + P ++ E L L Y P ++++ +T Sbjct: 260 EEGDYLREKRDESLEKLAERDDFPGSEQFLPYYYPE-LHTLIDYLPDDSVIFFDQAEKTW 318 Query: 292 AE-RFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKT---EHLPTK 347 + D L + ++ L +L + L +LK++ V T E L Sbjct: 319 QRIKGFIDELQETQATLLEQGSVLPTYHKNFLSREALLDKLKDFNFVYSSTSINEELSWV 378 Query: 348 AANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKI 407 + F + + +R+ ++T V ++ S + + L ++ Sbjct: 379 KDFEKVSFTTRSVEPYHGKLDLFAERVRELVDT-GYRVFVTLNSSNKARRVVNYLKENEM 437 Query: 408 APQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINP 467 A R +E S +M G+ GF+ NLAL E ++LG ++++ I Sbjct: 438 AVAF--RREEFSRERIIVMPGSLSEGFIIDDINLALFTEKEVLGN--PQKKRRQLNDIEN 493 Query: 468 DTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLH 527 I ++ EL +G VVH HG+G+Y G+ TL G +YL+L YA + KLYVP + Sbjct: 494 GVKISSIDELQVGDYVVHENHGIGKYLGVKTLAVQGQHKDYLVLKYAGEDKLYVPTDQFN 553 Query: 528 LISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 587 L+ +Y G + L+KLGG+ W + +QK E V+++A LL++YA+R +G++F D Sbjct: 554 LVQKYIGADNKPPKLYKLGGNDWKKVKQKVKESVKEMAIGLLELYAERETIKGYSFSDDT 613 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 + F ++FP+E TPDQ +AI V +DM MDRL+CGDVG+GKTEVA+RAAF AV Sbjct: 614 VWQKEFEEAFPYEETPDQLKAIEEVKNDMESATPMDRLLCGDVGYGKTEVAIRAAFKAVM 673 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 + KQ AVLVPTT+LAQQHY+ F +R N+P+ IEMISRF++ EQ ++L ++A G++DI+ Sbjct: 674 DGKQTAVLVPTTILAQQHYNTFSERMKNYPINIEMISRFKTPAEQREVLKKLAAGEVDII 733 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 IGTH+LL DV F DLGLLI+DEE RFGV HKE+IK ++ NVD+LT+TATPIPRTL+MA+ Sbjct: 734 IGTHRLLSRDVVFNDLGLLIIDEEQRFGVSHKEKIKDLKRNVDVLTMTATPIPRTLHMAL 793 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 G+RD+S+I TPP R ++T++RE++ ++R+A+ +E+ R GQVY+++N VE+IQ+ A Sbjct: 794 VGVRDMSVIETPPENRYPIRTYIREFNKELIRDAVRKELGREGQVYFVHNRVEDIQEQAT 853 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 + +LVPE R+A+ HGQM E +LER+M DF++ +++VLVCTTIIETG+DIP NTII+ R Sbjct: 854 MIKKLVPECRVAVAHGQMNEHKLERLMLDFYNHQYDVLVCTTIIETGLDIPNVNTIIVNR 913 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 AD GLAQL+QLRGRVGRS+ AYA+LL + + A+KRL AI +LG+GF +A Sbjct: 914 ADQMGLAQLYQLRGRVGRSNRIAYAYLLYEKDRVLPEVAEKRLRAIKEFTNLGSGFKIAM 973 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR 1007 DLEIRGAG LLG EQ G + ++GFSLY +LLE AV+ LK + + E+EL Sbjct: 974 RDLEIRGAGNLLGPEQHGHIASVGFSLYCKLLEGAVEELKGKEKDKGIT----RVEIELD 1029 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 + + LPD++I D ++ YK+I + K E+E++ ELIDRFG P+P LL I++L+ Sbjct: 1030 IDAYLPDEYITDSRQKIDIYKKIMALKDFEEVEDMIDELIDRFGDPPEPVLNLLGISKLK 1089 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE 1127 +A KLGI K+ N+K F + ++++ ++ ++ + ++ R LS Sbjct: 1090 VKASKLGIDKISRNKKFVEFRFMKPDYLDGDKVVKFVKNHSRKVKIKSGKRPVIAYRLSP 1149 Query: 1128 RKTRIEWVRQFMRELE 1143 +T I+ + + + EL+ Sbjct: 1150 GRTTIKRLEKILSELK 1165 >UniRef50_Q2SWT7 Transcription-repair coupling factor n=107 Tax=Proteobacteria RepID=Q2SWT7_BURTA Length = 1217 Score = 1224 bits (3168), Expect = 0.0, Method: Composition-based stats. Identities = 575/1150 (50%), Positives = 759/1150 (66%), Gaps = 17/1150 (1%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEI--AERHAGPVV-LIAPDMQNALRLHDE 58 P Q L VKAG++ G+A A ++A A R P++ +I + +A RL E Sbjct: 67 PSQSPVAL-VKAGQRFAFDGAHGSADALVIARYLAAHRAQVPLLAVICANAVDAQRLAQE 125 Query: 59 ISQFTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRV 117 + F V L DWETLPYD+FSPHQD++S RL+TL+ L + +L+VP T + R+ Sbjct: 126 LRYFAPDARVRVLPDWETLPYDTFSPHQDLVSERLATLHDLGEGRCDILLVPATTALYRM 185 Query: 118 CPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE 177 P SFL + +G+RL L+ QL AGY HV QV+ GEY RG+L+DLFPMGS Sbjct: 186 PPASFLAAYTFAFTQGERLDEAKLKAQLTLAGYEHVSQVVRPGEYCVRGSLIDLFPMGSP 245 Query: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEV 237 LPYR+D FDD++DS+R FD D+QR+L V + LLP EFP D+AA FRS+WR+TFE Sbjct: 246 LPYRIDLFDDQVDSIRAFDPDTQRSLYPVRDVRLLPGREFPFDEAARTAFRSRWRETFEG 305 Query: 238 KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQA 297 IY+ + G AGIEY+ PLFF E LF Y P N LV TGDL+ + +RF A Sbjct: 306 DPSRAPIYKDIGNGVPSAGIEYYLPLFFDE-TATLFHYLPENAQLVFTGDLDAAIKRFTA 364 Query: 298 DTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQK 357 DT R+ D RP+L PQ L+L D+ + K + R+ L + AA Sbjct: 365 DTKQRYAFLSHDRERPILEPQRLFLSDDDFYLLAKPFARIVLPAQPSGGWAA-------P 417 Query: 358 LPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE 417 LP+LA+ APL A +LET + V+F+VES GRRE + +L A + P Sbjct: 418 LPNLALDRHADAPLAAFAAYLETTNNRVLFTVESAGRRETIAQLFAEHHLRPAGSDSFAA 477 Query: 418 --ASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQD-SRRTINPDTLIRNL 474 +D L + GF A++ E++L G R + + N D ++R+L Sbjct: 478 WLETDERFALGVAPLASGFAVPGEGYAIVTETELYGALGRRAGRRRQEQASNVDAMVRDL 537 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG 534 +EL +G PVVH +HG+GRY G+ +++ G E+L L YA D+KLYVPV+ LH+ISRY+G Sbjct: 538 SELKVGDPVVHAQHGIGRYMGLVSMDLGEGDTEFLHLEYAGDSKLYVPVAQLHVISRYSG 597 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 ++APLH LG W RA+++AA+++RD AAELL++YA+RAA+EG AF D Y F Sbjct: 598 ADPDSAPLHALGSGQWERAKRRAAQQIRDTAAELLNLYARRAAREGHAFALDPRDYVKFA 657 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 DSF FE TPDQA AI AV+ DM MDRLVCGDVGFGKTEVA+RAAF+AV KQVA+ Sbjct: 658 DSFGFEETPDQAAAIAAVIGDMTSGKPMDRLVCGDVGFGKTEVALRAAFIAVMGGKQVAL 717 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 L PTTLLA+QH F DRFA+WPV+I +SRF+S KE + ++ +G +DI+IGTHKLL Sbjct: 718 LSPTTLLAEQHTQTFIDRFADWPVKIVELSRFKSTKEVNAAIQQINDGSVDIVIGTHKLL 777 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 SDV+FK LGL+I+DEEHRFGVR KE +KA+RA VD+LTLTATPIPRTL MA+ G+RD S Sbjct: 778 SSDVQFKRLGLVIIDEEHRFGVRQKEALKALRAEVDVLTLTATPIPRTLGMALEGLRDFS 837 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 +IAT P +RLA+KTFVR + V+REA+LRE+ RGGQVY+L+N+VE I+ L ELVP Sbjct: 838 VIATAPQKRLAIKTFVRREEESVIREAMLRELKRGGQVYFLHNEVETIENRRAMLEELVP 897 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 EARI I HGQM ERELERVM DF QR NVL+CTTIIETGID+P+ANTII+ RAD FGLA Sbjct: 898 EARIVIAHGQMHERELERVMRDFVAQRANVLLCTTIIETGIDVPSANTIIMHRADKFGLA 957 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QLHQLRGRVGRSHHQAYA+LL P+A+T AQ+RLEAI +E+LG+GF LA HDLEIRG Sbjct: 958 QLHQLRGRVGRSHHQAYAYLLVHDPQALTKQAQRRLEAIQQMEELGSGFYLAMHDLEIRG 1017 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPD 1014 GE+LG++QSG + IGF LY E+L +AV ALK G+EP L + TE+ L P++LP Sbjct: 1018 TGEVLGDKQSGEIHEIGFQLYTEMLNDAVKALKNGKEPDLTAPLAATTEINLHAPAILPA 1077 Query: 1015 DFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 D+ DV RLS YKR+A+ + + ++ I+ ELIDRFG LP A L++ RLR A+ LG Sbjct: 1078 DYCGDVQERLSLYKRLANCEHGDAIDGIQEELIDRFGKLPPQAHALVETHRLRLAAKPLG 1137 Query: 1075 IRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEW 1134 I K++ +E ++F ++P +I ++QK +H +L G +L+ + R+ Sbjct: 1138 IMKIDASEAAIGLQFVPNPPIDPMRIIDMVQKH-RHIKLAGQDKLRIETRTPDLAVRVST 1196 Query: 1135 VRQFMRELEE 1144 V++ +R L + Sbjct: 1197 VKETLRALGQ 1206 >UniRef50_C6P0P2 Transcription-repair coupling factor n=5 Tax=Betaproteobacteria RepID=C6P0P2_9PROT Length = 1227 Score = 1217 bits (3148), Expect = 0.0, Method: Composition-based stats. Identities = 559/1189 (47%), Positives = 748/1189 (62%), Gaps = 60/1189 (5%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNL 70 + L G++ A +A+ A +H+ P+V+IA + A RL +EI F + V L Sbjct: 42 SKHSRPRYSNLQGSSDALALAQYAVQHS-PLVIIAANALEAQRLVEEIPFFDPKLRVHLL 100 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQL----------------PTMQR----------- 103 DWETLPYD FSPHQD+IS RL+TL+ + + + Sbjct: 101 PDWETLPYDHFSPHQDLISERLATLHHIRSIGQQTARPSPQSSPASGRGSERENQSSTSA 160 Query: 104 -GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEY 162 V++VP+ T + + P S+L + +KKG+RL DA R Q+ AGY HV QV+ GEY Sbjct: 161 CDVIVVPITTALYPLPPVSYLAAYTFFLKKGERLDLDAFRQQMTLAGYNHVQQVLTPGEY 220 Query: 163 ATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKA 222 RG ++DLF MGS LPYR+D FDDEI+++ FDVD+QRTL V I LLPA EFP D+ Sbjct: 221 CVRGGIIDLFAMGSVLPYRIDLFDDEIETIATFDVDTQRTLYPVPEIRLLPAREFPLDEK 280 Query: 223 AIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLL 282 FR +RD FE IY+ VSKG PAGIEY+ PLFF + LF Y P L Sbjct: 281 GQATFRQNFRDRFEGDPSKSRIYKDVSKGIAPAGIEYYLPLFF-DQTATLFDYLPKIATL 339 Query: 283 VNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTE 342 +++ + F D +R+ DP PLL + L+L ++ F K + R+ + Sbjct: 340 CLHHNVDEAITSFGKDAASRYNLLRGDPQHPLLETKELFLDGEQFFIRAKEFARIDVIAA 399 Query: 343 HLP--------------------------TKAANANLGFQKLPDLAVQAQQKAPLDALRK 376 P +P +AV + + P Sbjct: 400 SAPSPLAPLPEGEGNLSSLSPGEGVGVREDSKNTTRCSTAAIPPIAVDRRAEVPTQKFAD 459 Query: 377 FLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG--RYLMIGAAEHGF 434 FL + G V+ ES GRRE + L + P L +G + GF Sbjct: 460 FLRAYAGRVLLLAESLGRREIMSGYLKEYGLTPAVCEDYASFLAGQDKFMLGVGPVQIGF 519 Query: 435 VDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYA 494 LA++ E++L + R + R N + ++R+L+EL G PVVH +HG+ RY Sbjct: 520 SLPDEQLAIVTETELYAAQPRSRANRAARKSNVEGMLRDLSELKPGDPVVHEQHGIARYR 579 Query: 495 GMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRAR 554 G+ L+ G E+L+L YA + KLYVPVS LH+ISRY+GGA E APLHKLG AW +A+ Sbjct: 580 GLVNLDLGEGENEFLLLEYAGEDKLYVPVSQLHVISRYSGGAAEAAPLHKLGSGAWDKAK 639 Query: 555 QKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLS 614 ++A ++VRD AAELL+IYAQRA ++G AFK Y+ F F FE T DQA AI AVL Sbjct: 640 RRAMQQVRDTAAELLNIYAQRATRKGHAFKLTYHDYEAFAAGFGFEETADQAAAIEAVLL 699 Query: 615 DMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA 674 D+ MDRL+CGDVGFGKTEVA+RAAF+A KQVAVLVPTTLLA+QH+ NF RFA Sbjct: 700 DLQSGKPMDRLICGDVGFGKTEVALRAAFVAASEGKQVAVLVPTTLLAEQHFQNFSTRFA 759 Query: 675 NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRF 734 +WP+RI +SRFRSAKE TQ L ++A+GK+DI+IGTHKL+Q DVKF +LGL+I+DEEHRF Sbjct: 760 DWPIRIAELSRFRSAKEVTQALKDLADGKLDIVIGTHKLIQKDVKFHNLGLVILDEEHRF 819 Query: 735 GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYD 794 GV+ KE++KA+RA VD+LTLTATPIPRTL M++ G+RD S+IAT P RRL++KTFV + Sbjct: 820 GVQQKEKLKALRAEVDVLTLTATPIPRTLAMSLEGLRDFSVIATAPQRRLSIKTFVSGFS 879 Query: 795 SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 854 V+REA+LRE+ RGGQVY+L+N+V+ I E+L L+PEARI + HGQM ER+LE VM Sbjct: 880 QGVIREAVLRELKRGGQVYFLHNEVDTIANMLEKLETLLPEARIRVAHGQMGERDLEAVM 939 Query: 855 NDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL 914 DFHHQRFNVL+C+TIIETGID+PTANTII+ RAD FGLAQLHQLRGRVGRSHHQAYA+L Sbjct: 940 RDFHHQRFNVLLCSTIIETGIDVPTANTIIMNRADRFGLAQLHQLRGRVGRSHHQAYAYL 999 Query: 915 LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSL 974 L +T A+KRLEAI ++E LG+GF LA HDLEIRGAGE+LGE QSG M+ IGFSL Sbjct: 1000 LVDSMDGLTAQAKKRLEAIQAMEQLGSGFFLAMHDLEIRGAGEVLGESQSGEMQEIGFSL 1059 Query: 975 YMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK 1034 Y ++L A+ +LK G+EP + TE+ L P+LLP+D+ D++ RL YKR+A+ Sbjct: 1060 YNDMLAAAIASLKQGKEPDMTHPLGVTTEINLHTPALLPNDYCGDIHQRLIIYKRLANCD 1119 Query: 1035 TENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH 1094 T+ +L++++ ELIDRFGLLP+PA+TLLD RLR A+ LGI K++ + + VI+F Sbjct: 1120 TQEDLDDMQQELIDRFGLLPEPAQTLLDSHRLRILAKPLGISKVDASSEAIVIQFVPNPP 1179 Query: 1095 VNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELE 1143 ++P +I ++Q +H ++ G +L+ + + R+ VR F EL+ Sbjct: 1180 IDPMKVITMIQ-SKRHIKMAGQDKLRIELKYGDLQQRVLAVRNFFGELK 1227 >UniRef50_Q31GG0 Transcription-repair coupling factor n=59 Tax=Gammaproteobacteria RepID=Q31GG0_THICR Length = 1159 Score = 1212 bits (3137), Expect = 0.0, Method: Composition-based stats. Identities = 574/1139 (50%), Positives = 779/1139 (68%), Gaps = 19/1139 (1%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF--TDQMVMNLADWETL 76 L ++ +A A + E A+ G VL+ +M A + + + F TD +++ +WETL Sbjct: 27 LNNISESALALI--EKAQNAPGLAVLLTENMAEANKYSELLRFFAETDYPILSFPEWETL 84 Query: 77 PYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 PYD FSPHQDIIS RL TLYQLP+ ++G+LI+PV+TL+Q+V PH F+ + +++ G+ + Sbjct: 85 PYDQFSPHQDIISQRLKTLYQLPSTKQGLLILPVSTLIQKVVPHQFIEKYTFLLQCGETV 144 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 DA QL+S+GY+ V QVMEHGE+A RG+++DL+PMGS PYRLD FDDEI+++R FD Sbjct: 145 DIDAFTRQLESSGYQRVSQVMEHGEFAVRGSIIDLYPMGSRTPYRLDLFDDEIETIRSFD 204 Query: 197 VDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAG 256 ++QR+++ +E I LLPA E+ I LFR +R F +Y+ V G G Sbjct: 205 PETQRSVDSIEQIELLPAKEYDLTPEGISLFRQNFRSHFGDDARNSQLYRSVKDGQTVDG 264 Query: 257 IEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLP 316 +EY+ LF S + F Y P++ L N GDL+ + D R++ +P P+L Sbjct: 265 LEYYLSLFHS-NIATFFDYLPSDCLFFNQGDLQAQIRQNWQDYQERYDIAQHNPDYPVLV 323 Query: 317 PQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRK 376 P L L +E FS LK + R+Q + PT A A LPDL +Q+ + PL L Sbjct: 324 PSELILSENETFSALKAFHRIQFSLQ--PTDKATATFKTYPLPDLTIQSNSEYPLAKLNA 381 Query: 377 FLET----FDGPVVFSVESEGRREALGELLARI----KIAPQRIMRLDEASDRG--RYLM 426 FL+ +G +++ ES GRRE L +L++ P++I E ++ Sbjct: 382 FLDQYASEHNGRILYCAESTGRRETLLTILSKHPQFKGKLPKQIDSWGEFKTSKAPYEII 441 Query: 427 IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 +G E ++ ES + G+ V ++R+ R+ D I NL EL +GQP+VH Sbjct: 442 VGPLEDSVYTDD--FCILSESQIFGQTVIQKRRRKRKHSEFDNAISNLIELDLGQPIVHF 499 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLG 546 +HGVGR+ G+ T+ G E+LM+ YA DAKLYVPV+SLHLISRY G + E APLHKLG Sbjct: 500 DHGVGRFLGLETMTIQGEEHEFLMIQYAGDAKLYVPVTSLHLISRYTGASAETAPLHKLG 559 Query: 547 GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606 D W +A++KAAEKVRDVAAELLDIYAQR A+ G+AF+ D E Y F FPFE TPDQ Sbjct: 560 SDKWDKAKRKAAEKVRDVAAELLDIYAQREARPGYAFQTDEEAYARFRAGFPFEETPDQE 619 Query: 607 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 666 AI AVLSDM MDRL+CGDVGFGKTEVAMRAAF+A + KQVAVLVPTTLL+QQH Sbjct: 620 AAIEAVLSDMKSDKPMDRLICGDVGFGKTEVAMRAAFVAAYSGKQVAVLVPTTLLSQQHL 679 Query: 667 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 +NF++RFA+WP+RIE +SRF+SAKE QI+ V ++DI+IGTHK++Q+D++F +LGL+ Sbjct: 680 ENFKNRFADWPIRIEGLSRFQSAKETKQIVEAVKNNQVDIIIGTHKIIQNDMQFGNLGLI 739 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 I+DEEHRFGVR KE++K +R VD++T+TATPIPRTLNMAM+ +RDLSIIAT PA+RLAV Sbjct: 740 IIDEEHRFGVRQKEQLKKLRTEVDVMTMTATPIPRTLNMAMNDLRDLSIIATAPAKRLAV 799 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 +TFV++++ VV+EA LREI RGGQ+Y L+N+V+ I++ AE + L+PEA++ HGQM Sbjct: 800 QTFVQDWNPDVVKEACLREIRRGGQIYLLFNNVDKIEQMAEEIQALLPEAKVETAHGQMH 859 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 ERELE+VM +F+H+RFN+LVCTTIIETGIDIPTANTI+I RAD FGLAQLHQLRGRVGRS Sbjct: 860 ERELEQVMQNFYHRRFNILVCTTIIETGIDIPTANTILIHRADKFGLAQLHQLRGRVGRS 919 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 HH+AYA+L T MT DA+KRL AIA + LGAGF LA+HDLEIRGAGELLG+ QSG Sbjct: 920 HHKAYAYLFTAGKALMTKDAEKRLTAIAKHDTLGAGFMLASHDLEIRGAGELLGDGQSGQ 979 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026 + IGF LY +LL+ AV ALK+G++P L+ EVEL MP+L+P+D++PD++TRL F Sbjct: 980 IHEIGFGLYSDLLDRAVRALKSGKQPELDAKLHTGAEVELGMPALIPEDYLPDIHTRLVF 1039 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGV 1086 YKRIASA+ N L+E++VE+IDRFGLLPD + L + R++ L ++K+E +E Sbjct: 1040 YKRIASAEDNNALQELEVEMIDRFGLLPDQVKNLFETTRVKLVIDALNLKKVEASEAMIR 1099 Query: 1087 IEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEEN 1145 I+F ++NP LI L+Q P++Y+L G LK+ + E K RI+ + + + Sbjct: 1100 IQFGSNPNINPLELIKLIQNHPKNYQLKGQIELKYFDTMLEMKQRIQAIELIVATISNK 1158 >UniRef50_Q12NL8 Transcription-repair coupling factor n=2 Tax=Shewanella RepID=Q12NL8_SHEDO Length = 1179 Score = 1212 bits (3137), Expect = 0.0, Method: Composition-based stats. Identities = 642/1179 (54%), Positives = 840/1179 (71%), Gaps = 33/1179 (2%) Query: 1 MPEQYRYTLP-VKAGEQ-RLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDE 58 M + +T P VK G+Q + L L G + + +A++ + G +++ D A+ L E Sbjct: 1 MSQFSVFTPPSVKKGQQTQRLVTLGGLSQSLSLAQLILANKGTSLIVTHDTPTAMLLETE 60 Query: 59 ISQFT---DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 + D + D ETLPYDSFSPHQD+IS RL TL QL + +IVP+NTLM Sbjct: 61 LHYLLANHDVNLCLFPDRETLPYDSFSPHQDLISQRLETLAQLGNLGHNAVIVPINTLMV 120 Query: 116 RVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175 R+ P S+L + +V+KKG + +R L GY V+QV EHGE+A RG++LD+FP G Sbjct: 121 RLPPQSYLSANVMVLKKGDTYALQTVRQHLVDTGYHLVEQVYEHGEFAIRGSILDIFPTG 180 Query: 176 SELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF 235 + P R++ FDDEI+S+R FDV++QR+ V+AI +LPA EF TD AAIE FR ++R F Sbjct: 181 CQQPLRIELFDDEIESIRHFDVETQRSEVAVDAIRMLPAKEFATDSAAIEGFRQRYRRRF 240 Query: 236 EV-KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAER 294 EV ++ E +YQ VS+ +PAGIE + PLFF + LF Y P NT L+ GD++ + Sbjct: 241 EVISKEAESVYQLVSRNLMPAGIENYLPLFFDD-TASLFDYLPENTQLITLGDIDKACAN 299 Query: 295 FQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL--------------K 340 + R+E+R VDP+RPLL P L+L ++LF+ K + R Q Sbjct: 300 HLTEIHHRYEDRRVDPLRPLLAPHELYLTQEQLFAAFKPYKRSQFFIHTPGDAQLGEDGT 359 Query: 341 TEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGE 400 + + K + LPD+ + K PL++L+ F P++FS ESEGRREAL Sbjct: 360 KKDVAKKDSALQANVAPLPDINANHKLKQPLESLQAF-AQDGKPLLFSAESEGRREALLA 418 Query: 401 LLARIKIAPQRIMRLDEASDRGR-------YLMIGAAEHGF---VDTVRNLALICESDLL 450 LL++I I P LDE D L++ G L+LICE++L Sbjct: 419 LLSKIGIKPTLFKHLDEFLDASVPLKGPVHGLIVSPLSRGCTLLDSPKGELSLICETELF 478 Query: 451 GERVARRRQD-SRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL 509 G ++A++R+ ++ ++ D LI++LAEL +GQ +VHLEHGV Y G+ TL+ GG+ EYL Sbjct: 479 GHKIAQQRRRDKQKQVSSDALIKDLAELKVGQAIVHLEHGVALYQGLETLDTGGLVAEYL 538 Query: 510 MLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELL 569 L YA KLYVPVSSLHLISRY +E+NA L+KLG + W++A++KA EK+RDVAAELL Sbjct: 539 KLEYAGGDKLYVPVSSLHLISRYNANSEDNAQLNKLGNETWAKAKKKAIEKIRDVAAELL 598 Query: 570 DIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGD 629 D+YA+R ++ G A D ++Y F FP+E T DQ AI AVL+DM P +MDRLVCGD Sbjct: 599 DVYARRQSRPGEALAIDADEYAQFAQGFPYEETVDQESAIIAVLNDMQAPTSMDRLVCGD 658 Query: 630 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSA 689 VGFGKTEVAMRAAF+AV+ KQV VLVPTTLLAQQHY+NF+DRFA+WPV IE++SRFRSA Sbjct: 659 VGFGKTEVAMRAAFVAVNAGKQVVVLVPTTLLAQQHYENFKDRFADWPVEIEVMSRFRSA 718 Query: 690 KEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANV 749 KEQ Q+L ++EGK+DI+IGTHKLLQS+ KF DLGLLI+DEEHRFGVR KE+IKA+RANV Sbjct: 719 KEQEQVLQSLSEGKVDIVIGTHKLLQSEAKFVDLGLLIIDEEHRFGVRQKEKIKALRANV 778 Query: 750 DILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRG 809 DILTLTATPIPRTLNMAMSGMRDLSIIATPPA+RLAVKTFVREY +REA+LREILRG Sbjct: 779 DILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVREYHQATIREALLREILRG 838 Query: 810 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 869 GQVYYL+N+VE I+K A+ L +L+PEAR+ GHGQMRER+LE+VM DF+HQRFNVLVCTT Sbjct: 839 GQVYYLHNNVETIEKCAQDLRDLLPEARVVTGHGQMRERDLEKVMADFYHQRFNVLVCTT 898 Query: 870 IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKR 929 IIETGID+P+ANTI+I+RAD FGLAQLHQLRGRVGRSHHQAYA+++TP K ++TDA+KR Sbjct: 899 IIETGIDVPSANTIVIDRADKFGLAQLHQLRGRVGRSHHQAYAYMITPPIKLISTDARKR 958 Query: 930 LEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAG 989 LEAI +LE+LGAGF LAT DLEIRGAGELLG+EQSG + IGFSLYME+LE+AV ALK G Sbjct: 959 LEAIDALEELGAGFMLATQDLEIRGAGELLGDEQSGHISKIGFSLYMEMLESAVSALKEG 1018 Query: 990 REPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDR 1049 +EPSL + + Q EV+LR+P+LLP+D++ DVN RLS YKRIA+ K+E L+E++VE IDR Sbjct: 1019 KEPSLAYMLNAQCEVDLRIPALLPEDYVSDVNMRLSMYKRIANCKSEAMLDELRVEFIDR 1078 Query: 1050 FGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQ 1109 FGLLP+P + LL+++ + QA KLG K+E + KGG IEF + + ++P ++IGLLQKQP Sbjct: 1079 FGLLPEPTKNLLELSLYKHQATKLGATKIEMHAKGGSIEFGDNHKIDPMFIIGLLQKQPN 1138 Query: 1110 HYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA 1148 YR++GP +L+F K R+E V + +L +++I Sbjct: 1139 IYRMEGPNKLRFAIPAESSKQRLELVATLLEQLAQHSIG 1177 >UniRef50_B0TBA7 Transcription-repair coupling factor n=9 Tax=Firmicutes RepID=B0TBA7_HELMI Length = 1247 Score = 1208 bits (3126), Expect = 0.0, Method: Composition-based stats. Identities = 411/1162 (35%), Positives = 662/1162 (56%), Gaps = 36/1162 (3%) Query: 3 EQYRYTLPVKAGEQR-LLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 E K G ++ + L+ + L+A +A R P+ ++ +Q A R+ +++ Sbjct: 19 EFQHLWSNWKRGRRQQAVFGLSASQRTALMATMARRLGHPLCVVTHSIQQARRIAEDLQV 78 Query: 62 FTD-QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 + V++ E +PY+ + ++++ RL L +L + ++ ++ LM+++ P Sbjct: 79 LLPDEEVLSFPATEVMPYEVLTSSHELLAQRLDVLSRLARREPVTVVTTIDALMKKLVPP 138 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 + + L G R+ ++ +L GY+ V G+Y+ RG +LD++P+ LP Sbjct: 139 AVMAEADLEFIVGCRMELSHIQERLHYLGYQRTPMVEAPGQYSLRGGILDVYPLTRSLPA 198 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R++FFDDEIDS+R+FDV++QR+ E+ + PA E + R + R+ Sbjct: 199 RIEFFDDEIDSIRLFDVETQRSKEKQDRYAAGPAREMLLAAETLAQGRRELEKEAATARE 258 Query: 241 P-----------------EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV 283 + +Q+ +G G+E +Q F+ + + LFSY T++ Sbjct: 259 RLLQSGCQEAAARLQAKIDSYLEQLDEGIWVEGLEQFQNFFYPDQV-SLFSYLHPETIVF 317 Query: 284 NTG--DLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLK- 340 L+ SAE + + F + ++ L ++++ ++L EL + L Sbjct: 318 WDEPTRLKESAEAKEQEISETFVHL-LEAGSVLPAQRNVYRHYNDLVEELAGHRVIHLAL 376 Query: 341 -TEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALG 399 + + + F + + L+ + + V+ S RR+ + Sbjct: 377 LAKKIERVTVEDTIQFNAKNMHPFLGKLDMLAEELKNY-KKRRMAVLILAASTVRRDRIC 435 Query: 400 ELLARIKIAPQRIMRLD-EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRR 458 + L + Q + +D E + +G E GF L LI + ++ G +R Sbjct: 436 DALRDYGVEAQPVPGIDAELHPGTVAVGVGQLEAGFELVQARLVLITDLEIFGRE--KRP 493 Query: 459 QDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAK 518 + R++ I + +L +G VVH+ HG+GRY G+ LE GG+ +YL++ YA + + Sbjct: 494 RKPRKSAREGQRIDSFVDLALGDYVVHVNHGIGRYMGVEKLEVGGVHKDYLVIRYAGEDR 553 Query: 519 LYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAK 578 LYVP +HLI +Y G L++LGG+ W + +QK + VR++A +LL +YA R +K Sbjct: 554 LYVPTDQVHLIQKYVGAEGVAPKLYRLGGNEWHKVKQKVKDSVRELAGDLLKLYAARESK 613 Query: 579 EGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVA 638 G+A+ D + F ++FP+E TPDQA++I V +DM + AMDRL+CGDVG+GKTEVA Sbjct: 614 PGYAYSADTPWQKEFEEAFPYEETPDQARSIAEVKTDMEKAKAMDRLLCGDVGYGKTEVA 673 Query: 639 MRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAE 698 +RAAF AV + KQVA+LVPTT+LAQQHY+ FR+RF+ +PVR++++SRFRS KEQ L Sbjct: 674 IRAAFKAVQDGKQVAILVPTTILAQQHYNTFRERFSGYPVRVDVLSRFRSPKEQKASLEG 733 Query: 699 VAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATP 758 + G++DI+IGTH+L+ +DV FKDLGLLI+DEE RFGV HKE+IK ++ NVD+LTL+ATP Sbjct: 734 LKSGEVDIVIGTHRLVSNDVSFKDLGLLIIDEEQRFGVAHKEKIKHLKENVDVLTLSATP 793 Query: 759 IPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYND 818 IPRTL+M++ G+RD+SII TPP R V+T+V EY+ ++REA+ RE+ RGGQVYY+ N Sbjct: 794 IPRTLHMSLVGLRDMSIIETPPEDRYPVQTYVVEYNPELIREAVRRELNRGGQVYYVRNR 853 Query: 819 VENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 +E++ + A L LVP+ARI +GHG+MRE +LE+VM DF +++LVCTTIIETG+DIP Sbjct: 854 IEDLDRIARDLGALVPDARIVVGHGKMREDQLEQVMLDFLEGEYDILVCTTIIETGLDIP 913 Query: 879 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLED 938 NT+I++ AD GL+QL+QLRGRVGRS+ AYA+ K +T A+KRL AI + Sbjct: 914 NVNTLIVDGADLMGLSQLYQLRGRVGRSNRLAYAFFTYRKDKVLTEVAEKRLHAIREFTE 973 Query: 939 LGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLT 998 LG+GF +A DLEIRG G LLG EQ G M ++GF LY LLE A+ LK + Sbjct: 974 LGSGFKIAMRDLEIRGVGNLLGPEQHGQMASVGFDLYCRLLEEAIQELKGAK-----PEE 1028 Query: 999 SQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPAR 1058 + +T V++R+ + +PD ++ D +++ FYKR+ +A+T +++E ++ E+ DRFG P+P Sbjct: 1029 APETFVDIRVDAFIPDGYMADSLSKVQFYKRLLAARTVDQVEALEEEMEDRFGDPPEPVE 1088 Query: 1059 TLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTR 1118 L+ ++R++ Q+ G+ ++ ++ I F V + L+Q + Sbjct: 1089 NLVSLSRIKAYGQQAGVSAVQQEKEELRIRFFPHAKVEAKAVSALVQHLGRKVNFSATGG 1148 Query: 1119 LKFIQDLSERKTRIEWVRQFMR 1140 + K R + + + Sbjct: 1149 FEIRIKPGRVKPR--ELLRLLE 1168 >UniRef50_A3DIQ2 Transcription-repair coupling factor n=7 Tax=Clostridia RepID=A3DIQ2_CLOTH Length = 1178 Score = 1206 bits (3121), Expect = 0.0, Method: Composition-based stats. Identities = 378/1166 (32%), Positives = 614/1166 (52%), Gaps = 34/1166 (2%) Query: 1 MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60 + E +K G + + + + + + IA + A ++ +++S Sbjct: 18 IKEYTNVLENIKRGIPTTVTGPSESQKVHIACALCGHLGLKGIYIAYNEMQARKMFEDVS 77 Query: 61 QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 F + + E + +D + D I R++ LY++ G ++ L Q++ Sbjct: 78 FFFGKDAVFFPSKEIMLHDVEAKSYDSIYERINALYRIVNDDYGFIVTSAEALCQKLIDR 137 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 + + G R+ +L S GY V V ++A RG ++D+FP+ ++ Sbjct: 138 KLFKESIVNVALGDRIDLGLFTQKLVSIGYERVTTVEGKSQFAVRGGIVDIFPVNADTAV 197 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R++ FDDE+DS+R FD +QR++E +EA+ +LPA E + + + +++ Sbjct: 198 RIELFDDEVDSVRSFDTMTQRSVENLEAVTILPARELIYPPGLRDSIMEKILNDLKIQIK 257 Query: 241 PEH-----------------IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV 283 ++ S+ AG++ + P E + Y + +LV Sbjct: 258 KMEGKNNKSGIQKLEAKINSDIERFSQEYYFAGMDRYIPYII-EKPSAVIDYI-DSEILV 315 Query: 284 NTGDLETSAERFQADTLARFE--NRGVDPMRPLLPPQSLWLRVDELFSELKN-WPRVQLK 340 + + +R + E ++ + L ++ + L+ ++K + Sbjct: 316 FVDEPKRFEQRIENLITESNEMCKSFMENGQLLAGSFDIFFDCNYLWDKVKKCKNTLYFT 375 Query: 341 TEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGE 400 T + Q + + + + + VV ++ R E L E Sbjct: 376 TLPSDDGQEEKRENIVSKLLNSYQGHLEILEEDISHW-KKNRARVVILSGTKSRGEMLAE 434 Query: 401 LLARIKIAPQRIMRLD-EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQ 459 L I + + + G GF ++ +L G+ RR Sbjct: 435 TLRTKDIEAVYLEEPHRDIQPGEVVITHGVLNRGFEYPGIGFVVVSGKELFGQEKKTRRH 494 Query: 460 DSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKL 519 S + I +L++G VVH HG+G+Y G+ L + +YL + Y++ L Sbjct: 495 KSAK----GKKISVFTDLNVGDYVVHYVHGIGKYIGIEQLVVENVKKDYLKIQYSDGDYL 550 Query: 520 YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 YVP + L LI +Y G + L KLGG W++ R + E ++++A EL+++YAQR E Sbjct: 551 YVPTNQLDLIQKYIGSEGKTPKLSKLGGTDWAKTRARTKESLKELAQELINLYAQREMAE 610 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 G AF D + F D FP++ T DQ + I + DM P MDRL+CGDVG+GKTEVAM Sbjct: 611 GHAFGKDTVWQKQFEDLFPYQETEDQLRCIEEIKRDMESPRPMDRLLCGDVGYGKTEVAM 670 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 RA F AV + KQVA LVPTT+LAQQHY+ F++R ++P+ +E++SRFR+ EQ +IL +V Sbjct: 671 RAVFKAVMDGKQVAYLVPTTVLAQQHYNTFKERMKDFPITVEVLSRFRTQAEQKRILKDV 730 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 G +D+LIGTH+LLQ DV FKDLGLL++DEE RFGV HKE+IK M+ N+D+LTLTATPI Sbjct: 731 KAGMVDVLIGTHRLLQKDVCFKDLGLLVIDEEQRFGVTHKEKIKRMKTNIDVLTLTATPI 790 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTL+M++ G+RD+S I PP R V+T+V EY+ VVR+AI RE+ RGGQV+YLYN V Sbjct: 791 PRTLHMSLVGIRDISTIEEPPEERYPVQTYVMEYNDEVVRDAINREMSRGGQVFYLYNRV 850 Query: 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 I + A + +LVPEAR+AI HGQM E ELE +M F + +++LVCTTIIE+G+D+P Sbjct: 851 RAINQKAAEIQKLVPEARVAIAHGQMNETELENIMFRFINGEYDILVCTTIIESGLDMPN 910 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 NTII+E AD GLAQL+QLRGRVGRS+ AYA++ K ++ A+KRL+AI + Sbjct: 911 VNTIIVEDADKMGLAQLYQLRGRVGRSNRLAYAYITYKKDKVLSEIAEKRLQAIKEFTEF 970 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 G+GF +A DL++RGAG LLG +Q G ++++G+ +Y +LL AV+ L+ Sbjct: 971 GSGFKIAMRDLQLRGAGNLLGPQQHGHIDSVGYDMYCKLLAEAVNELRG----IPVTKED 1026 Query: 1000 QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPART 1059 ++ +++ + + + +D+I D N ++ YK+IAS E ++ + + EL+DR+G +P P + Sbjct: 1027 EEISIDVNVSAYIDNDYIGDENQKIDMYKKIASINDEQDVIDAEDELMDRYGEIPQPVKN 1086 Query: 1060 LLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRL 1119 LL IA ++ A+ G ++ + +++E ++N L L+ K + R Sbjct: 1087 LLQIAYIKSLAKACGFSSVQEKNDTVIFQYSESKNINFEVLGKLMDKYRRKLLFTASNRP 1146 Query: 1120 KFIQDLSERKTRIEWVRQFMRELEEN 1145 + E + + ++ L ++ Sbjct: 1147 YIT--FKTTGVKGEELLEIIKILLQD 1170 >UniRef50_Q12A09 Transcription-repair coupling factor n=2 Tax=Burkholderiales RepID=Q12A09_POLSJ Length = 1201 Score = 1200 bits (3105), Expect = 0.0, Method: Composition-based stats. Identities = 559/1192 (46%), Positives = 755/1192 (63%), Gaps = 57/1192 (4%) Query: 8 TLPVKAGEQRLLGELTGAACATLVAEIAER---HAGPVVLIAPDMQNALRLHDEISQFTD 64 P+ +G++ L + G+A A L+A + +R +I D A RL DE++ F Sbjct: 3 LPPLVSGKRYTLPQPPGSADALLLARLGQREQAAGKLTAIITSDATTAQRLMDEMAFFAP 62 Query: 65 Q-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG----VLIVPVNTLMQRVCP 119 DWETLPYD+FSPHQD+IS RL+TL+++ + V+IVP T + R+ P Sbjct: 63 DLRYALFPDWETLPYDTFSPHQDLISERLATLWRISQRDKDTGADVVIVPATTALYRLAP 122 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 SFL G+ K Q+L L+ QL AGY HV QV+ GEYA RG L+DLFPMGS +P Sbjct: 123 PSFLAGYTFEFKVKQKLDESRLKAQLTLAGYSHVTQVVGPGEYAVRGGLIDLFPMGSLVP 182 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR 239 +R+D FDDEIDS+R FD DSQR+L V + LLP EFP D A FR +WR+ + Sbjct: 183 FRVDLFDDEIDSIRTFDPDSQRSLYPVPEVRLLPGREFPMDDDARAKFRKRWRELLDGDP 242 Query: 240 DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADT 299 IY+ + G +GIEY+ PLFF E +F Y ++ +V GDLE + +RF DT Sbjct: 243 TKSRIYKDMGNGVATSGIEYYLPLFFDE-TATVFDYLGSDATVVLHGDLEPAFQRFWQDT 301 Query: 300 LARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLK------------------- 340 R+ P RP LPP+SL+L ++ ++ + ++ LK Sbjct: 302 KDRYRLVRDAPDRPALPPESLFLGAEQFYARANGYAQLALKAGSPHPNPLPGGEGIKGDL 361 Query: 341 ----------------TEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGP 384 + F LP +AV + PL + + Sbjct: 362 LPLQGGEESKGDLLPLPLGEGRGEGSPYTEFDSLPAMAVVRGAEDPLARFKGHVRNTAHR 421 Query: 385 VVFSVESEGRREALGELLARIKIAPQRIMRLDEAS--DRGRYLMIGAAEHGFVDTVRNLA 442 V+ ES+GRRE+L + L ++P L + D + A GF + Sbjct: 422 VLVLAESDGRRESLLDFLRASNVSPPAFNSLQDFQTSDEKLGIATAALNTGFSWLEEGID 481 Query: 443 LICESDLLGERVARRRQDSRRT--INPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLE 500 I E++L V RR++ ++ + + LI++L+EL++G PVVH HG+GRY G+ L+ Sbjct: 482 FITETELFAAGVTTRRRNKKQEQVSDVEALIKDLSELNVGDPVVHSAHGIGRYRGLLNLD 541 Query: 501 AGGIT--------GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSR 552 G E+L L YA+ A LYVPVS LHLISRY G + E APLH+LG W + Sbjct: 542 LGQDKNPDGSPSLQEFLHLEYADKATLYVPVSQLHLISRYTGVSAEEAPLHRLGSGQWEK 601 Query: 553 ARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAV 612 A++KAAE++RD AAELL+IYA+RAA+EG AF++ Y+ F + F FE T DQ AI+AV Sbjct: 602 AKRKAAEQIRDSAAELLNIYARRAAREGHAFRYSPGDYEAFANDFGFEETADQRAAIHAV 661 Query: 613 LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDR 672 + DM P MDRLVCGDVGFGKTEVA+RAAF+A+ KQVA+L PTTLLA+QHY DR Sbjct: 662 IQDMISPRPMDRLVCGDVGFGKTEVALRAAFIAITGGKQVALLAPTTLLAEQHYQTLVDR 721 Query: 673 FANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH 732 FA WPV++ +SRFRSA+E T + +A+G +DI++GTHKLL DVKF+ LGLLI+DEEH Sbjct: 722 FAKWPVKVAEMSRFRSAREITAAIKGLADGSVDIVVGTHKLLSQDVKFQRLGLLIIDEEH 781 Query: 733 RFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE 792 RFGVRHKE +KAMRA VD+LTLTATPIPRTL MA+ G+RDLS+IAT P RRLA+KTFVR Sbjct: 782 RFGVRHKETMKAMRAEVDVLTLTATPIPRTLGMALEGLRDLSVIATAPQRRLAIKTFVRS 841 Query: 793 YDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 852 ++ V+REA+LRE+ RGGQVY+L+N+VE IQ E+L E++PEARIA+ HGQM ERELER Sbjct: 842 ENNGVIREAVLRELKRGGQVYFLHNEVETIQNRREKLEEILPEARIAVAHGQMPERELER 901 Query: 853 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 VM DF QR+N+L+C+TIIETGID+P+ANTI++ RAD FGLAQLHQLRGRVGRSHHQAYA Sbjct: 902 VMKDFVAQRYNLLLCSTIIETGIDVPSANTIVMSRADKFGLAQLHQLRGRVGRSHHQAYA 961 Query: 913 WLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF 972 +L+ P + +T A +RLEAI +E+LG+GF LA HDLEIRG GE+LGE QSG+M +GF Sbjct: 962 YLMVPDIEGLTKQASQRLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGESQSGNMLEVGF 1021 Query: 973 SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIAS 1032 LY E+L AV +LKAGREP L S TE+ L P+LLP+D+ DV+ RLSFYK++A+ Sbjct: 1022 QLYNEMLSEAVASLKAGREPDLLSPLSVTTEINLHAPALLPNDYCGDVHLRLSFYKKLAT 1081 Query: 1033 AKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEK 1092 AK ++++ + E++DRFG LP A+TL+D+ RLR A+ G+ K++ I F + Sbjct: 1082 AKNTDQIDALLEEIVDRFGKLPPQAQTLIDVHRLRVIARPYGVVKVDAAPGLINITFKKD 1141 Query: 1093 NHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 ++ ++ L+QK +H +L G +L+ + L K R + VR +R L + Sbjct: 1142 PPIDSMAIMQLIQKN-RHIKLAGNDKLRIERALENPKDRAQMVRDVLRSLGQ 1192 >UniRef50_P37474 Transcription-repair-coupling factor n=170 Tax=Bacilli RepID=MFD_BACSU Length = 1177 Score = 1196 bits (3094), Expect = 0.0, Method: Composition-based stats. Identities = 390/1163 (33%), Positives = 631/1163 (54%), Gaps = 30/1163 (2%) Query: 4 QYRYTLPVKAG-EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 + G +++LL L+G+A + + +A P+ LI ++ A ++ D+++ Sbjct: 14 FKSIINGLHEGLKEQLLAGLSGSARSVFTSALANETNKPIFLITHNLYQAQKVTDDLTSL 73 Query: 63 TDQM-VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 + V+ E + + ++ + RL + +L + +++ PV + + + P Sbjct: 74 LEDRSVLLYPVNELISSEIAVASPELRAQRLDVINRLTNGEAPIVVAPVAAIRRMLPPVE 133 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 ++++ G + D L ++L GY D V GE++ RG ++D++P+ SE P R Sbjct: 134 VWKSSQMLIQVGHDIEPDQLASRLVEVGYERSDMVSAPGEFSIRGGIIDIYPLTSENPVR 193 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK--- 238 ++ FD E+DS+R F+ D QR++E + +IN+ PA E + Sbjct: 194 IELFDTEVDSIRSFNSDDQRSIETLTSINIGPAKELIIRPEEKARAMEKIDSGLAASLKK 253 Query: 239 -----------RDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG- 286 + H +++S+G + + F+ E L Y P NTLL+ Sbjct: 254 LKADKQKEILHANISHDKERLSEGQTDQELVKYLSYFY-EKPASLLDYTPDNTLLILDEV 312 Query: 287 DLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPT 346 E A F ++ + L + + + + + L H+ Sbjct: 313 SRIHEMEEQLQKEEAEFITNLLEEGKILHDIRLSFSFQKIVAEQKRPLLYYSLFLRHVHH 372 Query: 347 KAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIK 406 + + + Q + +F + + VVF ++ R + L +LA Sbjct: 373 TSPQNIVNVSGRQMQSFHGQMNVLAGEMERF-KKSNFTVVFLGANKERTQKLSSVLADYD 431 Query: 407 IAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTIN 466 I Y+M G + GF + LA+I E +L RV ++ + + Sbjct: 432 IEAAMTDSKKALVQGQVYIMEGELQSGFELPLMKLAVITEEELFKNRVKKKPRKQ--KLT 489 Query: 467 PDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSL 526 I++ +EL IG VVH+ HG+G+Y G+ TLE GI +YL + Y KLYVPV + Sbjct: 490 NAERIKSYSELQIGDYVVHINHGIGKYLGIETLEINGIHKDYLNIHYQGSDKLYVPVEQI 549 Query: 527 HLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 + +Y G + L+KLGG W R ++K V+D+A +L+ +YA+R A +G+AF D Sbjct: 550 DQVQKYVGSEGKEPKLYKLGGSEWKRVKKKVETSVQDIADDLIKLYAEREASKGYAFSPD 609 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 E + F +FP++ T DQ ++I+ + DM + MDRL+CGDVG+GKTEVA+RAAF A+ Sbjct: 610 HEMQREFESAFPYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAI 669 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 + KQVA+LVPTT+LAQQHY+ ++RF ++P+ I ++SRFR+ KE + + + G +DI Sbjct: 670 GDGKQVALLVPTTILAQQHYETIKERFQDYPINIGLLSRFRTRKEANETIKGLKNGTVDI 729 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 +IGTH+LL DV +KDLGLLI+DEE RFGV HKE+IK ++ANVD+LTLTATPIPRTL+M+ Sbjct: 730 VIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQIKANVDVLTLTATPIPRTLHMS 789 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 M G+RDLS+I TPP R V+T+V EY+ +VREAI RE+ RGGQVY+LYN VE+I++ A Sbjct: 790 MLGVRDLSVIETPPENRFPVQTYVVEYNGALVREAIERELARGGQVYFLYNRVEDIERKA 849 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 + ++ LVP+A++A HG+M E ELE VM F +VLV TTIIETG+DIP NT+I+ Sbjct: 850 DEISMLVPDAKVAYAHGKMTENELETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVF 909 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 AD GL+QL+QLRGRVGRS+ AYA+ K +T A+KRL+AI +LG+GF +A Sbjct: 910 DADKMGLSQLYQLRGRVGRSNRVAYAYFTYRRDKVLTEVAEKRLQAIKEFTELGSGFKIA 969 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVEL 1006 DL IRGAG LLG +Q G ++++GF LY ++L+ A++ K + +TE+++ Sbjct: 970 MRDLTIRGAGNLLGAQQHGFIDSVGFDLYSQMLKEAIEERKGDTAKT----EQFETEIDV 1025 Query: 1007 RMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARL 1066 + + +P+ +I D ++ YKR S T E E++ E+IDRFG P L +A + Sbjct: 1026 ELDAYIPETYIQDGKQKIDMYKRFRSVATIEEKNELQDEMIDRFGNYPKEVEYLFTVAEM 1085 Query: 1067 RQQAQKLGIRKLEGNEKGGVIEFAEKNH--VNPAWLIGLLQKQPQHYRLDGPT---RLKF 1121 + A++ + ++ ++ + +E+ ++ L L + + L ++ Sbjct: 1086 KVYARQERVELIKQDKDAVRLTISEEASAEIDGQKLFELGNQYGRQIGLGMEGKKLKISI 1145 Query: 1122 IQDLSERKTRIEWVRQFMRELEE 1144 ++ V ++ L++ Sbjct: 1146 QTKGRSADEWLDTVLGMLKGLKD 1168 >UniRef50_C0GIY9 Transcription-repair coupling factor n=2 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GIY9_9FIRM Length = 1177 Score = 1193 bits (3086), Expect = 0.0, Method: Composition-based stats. Identities = 397/1171 (33%), Positives = 631/1171 (53%), Gaps = 35/1171 (2%) Query: 1 MPEQYRYTLPVKAGEQ-RLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDE- 58 +P +K + +L+ L +A L+A + PV+++ PD +A R++++ Sbjct: 12 LPSLQPLLEGLKVKSRYQLVYGLDESARTMLMAALRLHTDRPVLIVTPDQTHAGRIYEDM 71 Query: 59 ISQFTDQMVMNLADWETLPYDSF-SPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRV 117 +S F D+ V E L Y + S D + R++ + +L V++ V+ ++ ++ Sbjct: 72 LSVFKDEDVYLFPGKELLYYSNLFSESGDAAAQRIAAMKRLARGDNIVVVATVSAMVTKM 131 Query: 118 CPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE 177 P + ++ + D L +L GY V+ V G+ + RG ++D++P G Sbjct: 132 PPFAPWQEACFTLRPDDDIPIDELLGKLVDGGYERVEMVDVQGQVSVRGGIVDIYPAGEP 191 Query: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQW------ 231 PYR++FF + +DS+R FD +SQR+ E V+ + L PA E A + S Sbjct: 192 YPYRIEFFGETVDSIRRFDPESQRSRERVDLLELTPARELVVTAAERKNALSALAKEDAK 251 Query: 232 -----------RDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT 280 +++ +++ + G+E + F+ + + YFP NT Sbjct: 252 LSEQLAKGVRTEAEGKLQERLAEHMEKIREEVYFPGMEQYLLYFY-DQAAKITDYFPDNT 310 Query: 281 LLV--NTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQ 338 LL E +AE+ + P +W L + L Sbjct: 311 LLFIDEPQRCENTAEQLVREIGEMQSTLFAQGDLPARSADMVWSYKSLLANLLTQLVAFS 370 Query: 339 LKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREAL 398 L ++ P Q + + ++ VV S R + Sbjct: 371 LFAHSSDHHPYRRSVSLSAKPVPKFLGQWDLFGEEVGQWRRQ-GYRVVILTSSRQRSTGI 429 Query: 399 GELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRR 458 E+LA I + + + R L+ G+ E GFV L L+ E D+L ++ Sbjct: 430 VEVLAEKNIPAHYTLSEPDLAQRSVTLLHGSLESGFVLPEIKLVLLTEQDILPQKKK--- 486 Query: 459 QDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAK 518 R + + EL +G VVH +HG+G+Y G+ TL+ GG +YL + Y+ + K Sbjct: 487 -KRRIKGKEGVRVGDYQELQVGDFVVHEQHGIGQYLGLRTLDVGGTQRDYLYIQYSGNDK 545 Query: 519 LYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAK 578 LY+P+ + ++ +Y G + + LGG WSR + + V+++A ELL +YA R + Sbjct: 546 LYIPIEQIDVVRKYIGVEGKKPKMSALGGGEWSRVKARVQASVQELAKELLALYAARETE 605 Query: 579 EGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVA 638 G AF D + F +FP+E TPDQ QAI V DM + DRL+CGDVG+GKTEVA Sbjct: 606 PGHAFSPDHSWQKDFEAAFPYEETPDQLQAIAEVKQDMEKSTVTDRLLCGDVGYGKTEVA 665 Query: 639 MRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAE 698 +R AF AV + KQ A LVPTT+LAQQHY NF +R +PV + ++SRF+S EQ + + Sbjct: 666 LRGAFKAVMDDKQAAFLVPTTVLAQQHYHNFVERLEGFPVNVGILSRFQSPAEQKETIKG 725 Query: 699 VAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATP 758 + EG ID+++GTH++L D++F+DLG L+VDEE RFGVRHKERIK ++ N+D+LT+TATP Sbjct: 726 LKEGTIDLVVGTHRILSKDIRFRDLGFLVVDEEQRFGVRHKERIKMLKKNLDVLTMTATP 785 Query: 759 IPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYND 818 IPRTL+M++ G+RD+S+I TPP R ++T+V EY ++REA++RE+ RGGQVY+++N Sbjct: 786 IPRTLHMSLVGVRDMSVIETPPEDRYPIQTYVLEYSDALIREAVMRELNRGGQVYFVHNR 845 Query: 819 VENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 V++I + A +L EL+PE R+A+ HGQM E LE+VM F ++VL+ TTI+E G+DIP Sbjct: 846 VQSINRWAAKLQELMPEVRLAVAHGQMPEDRLEKVMMGFLEGEYDVLLSTTIVEAGLDIP 905 Query: 879 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLED 938 NTIII+ AD FGLAQL+QLRGRVGRS+ AYA+L K +T A+KRL+AI + Sbjct: 906 NVNTIIIQDADKFGLAQLYQLRGRVGRSNRIAYAYLTYQKDKVLTEVAEKRLQAIKEFTE 965 Query: 939 LGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLT 998 LG+GF +A DLEIRGAG +LG EQ G M +GF LY++LLE+A+ K E + + Sbjct: 966 LGSGFKIAMRDLEIRGAGNILGPEQHGFMMAVGFDLYVKLLEDAIRTYKGQEEDTRQ--- 1022 Query: 999 SQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPAR 1058 + +E++ + LP +I D ++ FY+++A+ ++ ++ E K EL DR+G LP A Sbjct: 1023 --EPRIEIQADAYLPASYISDARQKIVFYQKVAAVESVEQVLEAKEELCDRYGPLPAAAE 1080 Query: 1059 TLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTR 1118 LL++A ++ A++L + + + I F + ++ L+ L ++ + Sbjct: 1081 NLLNVAHVKLLARELYVSSVSEEKGEIQIRFTKDFTLSGDLLLKLSKQFKGRLTAGTGKQ 1140 Query: 1119 --LKFIQDLSERKTRIEWVRQFMRELEENAI 1147 L F + R+ ++ + EL++ AI Sbjct: 1141 FILAFRLNTRSAGERLLFILELFDELKKLAI 1171 >UniRef50_Q2RMB9 Transcription-repair coupling factor n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RMB9_MOOTA Length = 1183 Score = 1192 bits (3085), Expect = 0.0, Method: Composition-based stats. Identities = 421/1168 (36%), Positives = 651/1168 (55%), Gaps = 34/1168 (2%) Query: 3 EQYRYTLPVKAGEQRL-LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-S 60 + Y ++ G + L L +A + + P++++ P + A RL +I S Sbjct: 15 QFYAIAGGLRRGAGEVQLYGLPEGMKGLWLAAMLDEFN-PILVVTPGSEEAQRLAADIES 73 Query: 61 QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 + + + L E LP + ++P ++ + RL L L + + +L+VPV L++++ P Sbjct: 74 FWPGEGIDYLPPSELLPLEVYTPSPELAAQRLKVLTNLVSGRTRILVVPVEDLLRKLPPP 133 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 L ++ GQ + R+AL +L GYR + V G+ A RG ++D+FP+G+E P Sbjct: 134 DTLRHSLQSLEVGQIIDREALLQKLTGLGYRREEVVEAPGQLAVRGGIIDIFPLGAEEPV 193 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKA---AIELFRSQWRDTF-- 235 RL+ F DEIDSLR FD SQR++ ++ AI + PA E +E ++++ T+ Sbjct: 194 RLELFGDEIDSLRRFDPVSQRSVADLRAIVVGPAQEVLPPPDLGPGLETLKAEFSQTYAT 253 Query: 236 ----------EVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV-- 283 E+K + + + G+ P G QP F+ LF YF LLV Sbjct: 254 LRQRQPQAARELKDRVQELIAMLEAGSWPGGSSQLQPFFYPRQ-ATLFEYFQRQPLLVLD 312 Query: 284 NTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEH 343 + L R + L F + + L +L +L + + R+ Sbjct: 313 DPARLLEEMRRREQQRLGIFTDM-LAAGLALPSQGQAYLDSADLERLWQRYQRLYFSLLP 371 Query: 344 L--PTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGEL 401 P +G A Q + ++ L ++ ++ V R AL + Sbjct: 372 RRVPGSNPRPAVGISAQTIPAFQGKLGLVVEELTRWRRE-GYRIILMVADPNRVVALRQA 430 Query: 402 LARIKIAPQRIMRLDEASDRGRYLMI-GAAEHGFVDTVRNLALICESDLLGERVARRRQD 460 LA I + RG +M+ G GF LA+I ++++ G RR Sbjct: 431 LAEQGIEALTHPEARDTLGRGEVIMVSGRLRQGFTWPEMRLAIIGDTEIYG---PIRRPR 487 Query: 461 SRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLY 520 +T + I + +L G VVH+ HG+GRY G+ L+ GG+ +YL++ YA +LY Sbjct: 488 RVKTPREGSKISSFTDLKEGDYVVHVHHGIGRYLGLQQLDVGGVKKDYLLIQYAGKDRLY 547 Query: 521 VPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEG 580 VPV + L+ +Y GG L++LGG+ W++ + + E V+++A ELLD+YA+R A G Sbjct: 548 VPVDQVSLVQKYVGGEGHVPRLYRLGGNEWNKVKSRVQEAVQEMAQELLDLYARREAIPG 607 Query: 581 FAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMR 640 AF D + F ++FP+ TPDQ +AI V +DM +P MDRL+CGDVG+GKTEVAMR Sbjct: 608 HAFGPDTPWQREFEEAFPYTETPDQLRAIAEVKADMEKPRPMDRLLCGDVGYGKTEVAMR 667 Query: 641 AAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA 700 AAF AV + QVAVLVPTT+LAQQHY+ F+ RFA +PV+I ++SRF S +EQ ++ + Sbjct: 668 AAFKAVMDGMQVAVLVPTTILAQQHYETFKARFAPFPVKIAVLSRFCSPREQKVVVEALK 727 Query: 701 EGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIP 760 G++DI+IGTH+LL SDV FK+LGL+I+DEE RFGV HKE++K +R +VD+LT+TATPIP Sbjct: 728 RGEVDIVIGTHRLLSSDVNFKNLGLVIIDEEQRFGVAHKEKLKQLRYSVDVLTMTATPIP 787 Query: 761 RTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVE 820 RTL+M+++G+RD+S+I TPP R V+T+V EY+ +VREAI RE+ RGGQV+ ++N V+ Sbjct: 788 RTLHMSLAGVRDMSMIETPPEDRFPVQTYVVEYNPELVREAIRRELDRGGQVFIVHNRVQ 847 Query: 821 NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880 +I + A + +LVPEAR+ IGHGQM E ELE VM DF R++VLV TTI+E G+DI A Sbjct: 848 DIDRFAYHIQQLVPEARVGIGHGQMGEEELENVMLDFISGRYDVLVSTTIVENGLDIQNA 907 Query: 881 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLG 940 NT+I++ +D+FGLAQL+QLRGRVGR++ AYA+ K + A+KRL AI G Sbjct: 908 NTLIVDESDNFGLAQLYQLRGRVGRTNRLAYAYFTYRPDKVLGEIAEKRLAAIREFTAFG 967 Query: 941 AGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ 1000 +G+ +A DL+IRGAG LG EQ G M +GF LY +LLE AV LK R + Sbjct: 968 SGYKIALRDLQIRGAGNFLGPEQHGHMVAVGFDLYCQLLEEAVRKLKEQRGEGVPRPALA 1027 Query: 1001 QTE---VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPA 1057 + + +EL + + L D++IP+ ++ Y R+ +A +E+I E+ DR+G P A Sbjct: 1028 EPQATPIELSVDTFLGDNYIPEATLKMELYHRLMNAGDLAAVEDIAAEMEDRYGPPPPEA 1087 Query: 1058 RTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPT 1117 R LL + R+R A+++G+ + + + F + + L+ L Q P+ Sbjct: 1088 RNLLALTRVRILAREVGVISVNQKNREVELSFGQHTGLRGEKLLQLNQYFPRKLAFSSAG 1147 Query: 1118 RLKFIQDLS--ERKTRIEWVRQFMRELE 1143 L + ++ ++ + + + ++ Sbjct: 1148 GLTIRVRVMGLSQEELLDLLEKVLTRIK 1175 >UniRef50_B2A3P0 Transcription-repair coupling factor n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A3P0_NATTJ Length = 1196 Score = 1190 bits (3079), Expect = 0.0, Method: Composition-based stats. Identities = 382/1176 (32%), Positives = 642/1176 (54%), Gaps = 41/1176 (3%) Query: 7 YTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-Q 65 ++ K ++++ ++G+ ++A + + P+ LI D A L+ ++ D + Sbjct: 21 FSPRRKRSTKQMVSGISGSEFPLILAGLFRAYGRPITLITYDNYRAESLYSDLVTLLDKE 80 Query: 66 MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHG 125 V + + P++ +D+ + R L + + + V I + + +++ P + Sbjct: 81 QVYIYPEHQVYPFELAWQSRDVNNERAQVLQAMLSKKSAVYIFSLKSAKEKLSPAQVVKQ 140 Query: 126 HALVMKKG-QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDF 184 L ++ G ++LS + +L GY + V + G+++ RG ++D+FP+ SELP R++F Sbjct: 141 TFLNLEVGNEKLSPTMIAEKLTGLGYENTSMVEQKGQFSHRGGIIDVFPVASELPVRIEF 200 Query: 185 FDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT-DKAAIELFRSQWRDTFEVKR---- 239 FDDEI+S+R FD+ +QR+L+E ++ + P + D + +Q FE+++ Sbjct: 201 FDDEIESIRAFDLATQRSLKEYNSLVVGPGSQLVIGDNTNLSQALNQLTREFELQKGKLM 260 Query: 240 -------------DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLL-VNT 285 + G + F+ + + + P N+L V+ Sbjct: 261 KDGITDRSEELEERINRDLSSLENGISLPHFHRYLSYFYPKNYGTIIDFLPTNSLFWVDE 320 Query: 286 GDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKN---WPRVQLKTE 342 + ++ F + + ++ + L +L+ ++++ S + L+ Sbjct: 321 PNRIKESDEFYNNEITELAESLIEEGKILPGESNLFYSIEDVLSGNPFDTIYSANFLRQN 380 Query: 343 HLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELL 402 + N+ + Q L +++++ + ++ + L E L Sbjct: 381 PFENVSQATNMSVKS--MNQFYGQWDFFLKEMKQWM-NNNYRIILFSPTPESARTLYENL 437 Query: 403 ARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR 462 + +I + + + ++ + +G + GF+ LA+I DL G + + R R Sbjct: 438 KKEEIGATIVEKGNTKTENQVVIAVGDLKSGFILQESKLAVITYGDLWGHQKKKIRSRKR 497 Query: 463 -RTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYV 521 ++ + + + EL + VVH +HG+G+Y G+ TLE GG+ +YL + YA + LYV Sbjct: 498 DKSEDKAVKVSDYRELQVEDYVVHEKHGIGKYMGIKTLEVGGLYKDYLHIKYAGNDSLYV 557 Query: 522 PVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGF 581 P + I +Y G + L+ LG W + +Q+ V+++A +LL +YA+R++++G+ Sbjct: 558 PTEQIDEIQKYVGKEGKPPKLYSLGSSEWQKVKQRVKSSVKELAEDLLKLYAERSSRKGY 617 Query: 582 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 641 AF D + F D FP+E TPDQ +AI+ + D+ MDRL+CGDVG+GKTEVAMRA Sbjct: 618 AFSQDTPWQKEFEDYFPYELTPDQKKAISEIKEDLESEQPMDRLLCGDVGYGKTEVAMRA 677 Query: 642 AFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE 701 AF AV KQV VLVPTT+LAQQH+ F++RFA +PV I +ISRF S K++ + E+ E Sbjct: 678 AFKAVMEGKQVCVLVPTTILAQQHFQTFKERFAPYPVDIRVISRFSSQKDEKLVKEEMKE 737 Query: 702 GKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPR 761 G +I+IGTHKLL VKF+DLGLLI+DEE RFGV+HKE+IK ++ N+D+LT+TATPIPR Sbjct: 738 GNAEIIIGTHKLLNKSVKFRDLGLLIIDEEQRFGVQHKEKIKMLKKNLDVLTMTATPIPR 797 Query: 762 TLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVEN 821 TL+M++ G+RDLS+I TPP R V+T+V E+ ++REA+ REI R GQVY ++N V+ Sbjct: 798 TLHMSLVGVRDLSVIETPPEGRFPVQTYVMEHSPQLIREAVNREISREGQVYVVHNRVKG 857 Query: 822 IQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 I K A+ +A+ VP+A++ + HGQM E++LERVM DF+ +++VLV T+I+E G+DI N Sbjct: 858 INKVAKEVADWVPDAKVGVAHGQMPEKQLERVMLDFYEGKYDVLVSTSIVEAGLDIQNVN 917 Query: 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGA 941 TIII AD GL+Q +QLRGRVGRS+ AYA+L K +T +A+KRL+AI +LG+ Sbjct: 918 TIIIYNADRMGLSQPYQLRGRVGRSNRMAYAYLTYQKDKVLTQEAEKRLKAIKEFTELGS 977 Query: 942 GFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLED----- 996 GF LA DLEIRGAG +LG EQ G + +GF +Y ++L++A+ + + E Sbjct: 978 GFKLALRDLEIRGAGNILGPEQHGHIMAVGFDMYTKMLKDAIKEISQESQTQEETTKIQD 1037 Query: 997 -----LTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFG 1051 ++ +VEL + + LP +I D +++ YK+ S + +E +++ EL DRFG Sbjct: 1038 DKTEVEKPEEVKVELNINAYLPTTYISDHEQKITIYKKARSINSYSEANDLETELKDRFG 1097 Query: 1052 LLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHY 1111 LP + LLDI RL+ A++ GI + ++ + ++ LI L K P Sbjct: 1098 SLPQEVKNLLDITRLKVLARETGIISITRQGYWVHLDLDPRQKISGENLIKLTTKFPGKI 1157 Query: 1112 RLDGP-TRLKFIQDLSERKT--RIEWVRQFMRELEE 1144 + L ++ K ++ + + L E Sbjct: 1158 TVSSQTDGLTLKVNVKNLKDSGLMDMINKVAESLLE 1193 >UniRef50_B1XUT3 Transcription-repair coupling factor n=24 Tax=Betaproteobacteria RepID=B1XUT3_POLNS Length = 1181 Score = 1188 bits (3074), Expect = 0.0, Method: Composition-based stats. Identities = 552/1175 (46%), Positives = 746/1175 (63%), Gaps = 39/1175 (3%) Query: 4 QYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGP---VVLIAPDMQNALRLHDEIS 60 +AG + L G++ A L+A+ A R+ +V+ Q A RL +EI Sbjct: 7 LVPPIPAPRAGRRFTFSGLIGSSDAALIAQTALRYRDKFSVMVIFCAQAQEAQRLLEEIP 66 Query: 61 QFTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCP 119 F Q L DWE LPYD FSPHQD++S RL+TLY+L +++VPV T +QR+ P Sbjct: 67 AFAPQLKTRLLPDWEILPYDHFSPHQDLVSERLATLYELLNGSCNIVLVPVTTALQRLGP 126 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 +FL H ++G +L+ AL+ QL AGY V VM GEY+ RG L DLFPMGS LP Sbjct: 127 PNFLASHTFFFRQGDKLNEAALKLQLQQAGYDPVSAVMRPGEYSIRGGLFDLFPMGSNLP 186 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR 239 YRLD F DEI+ +R F+ D+QR+L V+ + LLP HEFP D + FR +WR+ FE Sbjct: 187 YRLDLFGDEIEQIRAFNPDTQRSLYPVKEVRLLPGHEFPFDDTSRTSFRGRWREVFEGDP 246 Query: 240 DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFP---ANTLLVNTGDLETSAERFQ 296 IY+ S G AGIE + PLFF E LF Y P LV+ GD+E + + F Sbjct: 247 SRCSIYKDASLGIPSAGIESYLPLFFEEN-SSLFDYLPRSGDPVWLVSIGDVEETIKGFW 305 Query: 297 ADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQ 356 DTL+R+E D RP+LPP+ L+L VDE FS K + R+ L+ E + F Sbjct: 306 KDTLSRYEFLKHDLDRPILPPKELFLDVDEFFSTSKPYARLSLENEAVEKNE------FF 359 Query: 357 KLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLAR------------ 404 +PD++V + P+ LR + + + V+ +S GR+E++ +L Sbjct: 360 AVPDISVHRRDADPISRLRNVVASENVRVLICSDSAGRKESIRQLFDESNSVASVDGKSL 419 Query: 405 IKIAPQRIMRLDEASDRG--RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQ-DS 461 + P+ + E L+ +GF NL +I E++L +RR+ + Sbjct: 420 YSLKPEGFDSIAEFIKSESLFGLVTAPLFNGFSWPSENLIVITEAELFTTTTRQRRKGKA 479 Query: 462 RRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGE-----YLMLTYAND 516 + D L ++L+EL IG PVVH EHG+GRY G+ L E +L L YA Sbjct: 480 NENADSDMLFKDLSELKIGDPVVHAEHGIGRYQGLVLLNLAPPKEEPSFEEFLHLQYAGQ 539 Query: 517 AKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRA 576 A LYVPV L +++RYAG ++APLH+LG W +A++KAA+++RD AAELL +YA RA Sbjct: 540 ATLYVPVQQLQMVTRYAGSDPDSAPLHQLGSGQWGKAKRKAAQQIRDTAAELLGLYAARA 599 Query: 577 AKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTE 636 ++G AF+ Y F +SF FE TPDQA AI AV+ DM MDRLVCGDVGFGKTE Sbjct: 600 IRKGHAFEFSAHDYAAFAESFGFEETPDQANAIAAVIGDMTSGTPMDRLVCGDVGFGKTE 659 Query: 637 VAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQIL 696 VA+RA+F+AV KQVA+L PTTLLA+QH ++DRFA+WPVRI +SRF++ KE L Sbjct: 660 VALRASFVAVMGGKQVAILAPTTLLAEQHVATWKDRFADWPVRIVELSRFKTTKEINVAL 719 Query: 697 AEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTA 756 A +A+G+ DI+IGTHKLL + +F +LGL+I DEEHRFGVR K+ +KA+RA VDILTLTA Sbjct: 720 AAIAKGEADIIIGTHKLLSKETQFANLGLVIADEEHRFGVRQKDALKALRAEVDILTLTA 779 Query: 757 TPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLY 816 TPIPRTL MAM G+R+ SIIAT P +RLA+KTFVR V+REA+LREI RGGQVY+L+ Sbjct: 780 TPIPRTLGMAMEGLREFSIIATAPQKRLAIKTFVRREGDDVIREAVLREIKRGGQVYFLH 839 Query: 817 NDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876 N+VE IQ L EL+PEARI++ HGQM ERELE VM +F QR N+L+CTTIIETGID Sbjct: 840 NEVETIQNRKHALQELIPEARISVAHGQMHERELESVMREFVTQRTNILLCTTIIETGID 899 Query: 877 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 +PTANTII+ RAD FGLAQLHQLRGRVGRSHH+AYA+LL P+ +A++ AQ RL AI ++ Sbjct: 900 VPTANTIIMHRADKFGLAQLHQLRGRVGRSHHRAYAYLLVPNSEALSKQAQLRLNAIQAM 959 Query: 937 EDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLED 996 E+LG+GF LA HDLEIRGAGE+LG++QSG + IGF LY E+L AV +L++G+E L Sbjct: 960 EELGSGFYLAMHDLEIRGAGEVLGDKQSGEIHEIGFQLYTEMLNRAVKSLRSGKESDLLS 1019 Query: 997 LTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDP 1056 T+V L +P+LLP+D+ PDV+ RLS YKR A +EL ++ EL+DRFG LPD Sbjct: 1020 PLQATTDVNLGVPALLPEDYCPDVHERLSLYKRFAGTHDFSELMGLREELVDRFGDLPDQ 1079 Query: 1057 ARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGP 1116 AR+ + RLR + GI+K++ I+F ++P +I L+Q +H +L+G Sbjct: 1080 ARSFYETHRLRLEMAGFGIKKIDATPVSIQIQFIPNPPIDPMKIIQLIQ-SSKHIQLNGQ 1138 Query: 1117 TRLKFI----QDLSERKTRIEWVRQFMRELEENAI 1147 +LK + ++ + R++ +RQ +R L E+A+ Sbjct: 1139 DKLKVLPQKDREFERLEQRLDAIRQVLRRLNESAV 1173 >UniRef50_Q39PS2 Transcription-repair coupling factor n=4 Tax=Deltaproteobacteria RepID=Q39PS2_GEOMG Length = 1158 Score = 1187 bits (3071), Expect = 0.0, Method: Composition-based stats. Identities = 463/1154 (40%), Positives = 666/1154 (57%), Gaps = 30/1154 (2%) Query: 8 TLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM- 66 L K G L L G+A A L+A++ + P+++IAPD A + E+ F+ + Sbjct: 15 HLAPKTGR-VTLTGLKGSAPAYLLAQLLKTAERPLLVIAPDADRAAEICTELRFFSGRPF 73 Query: 67 -VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHG 125 V++ W+ P++ SPH D+ RL+ L +L + ++ + L QRV P + L Sbjct: 74 DVLSFPAWDVAPFEKGSPHADVTGQRLACLRRLMDRKTAAVVTTPDALRQRVLPRTMLDN 133 Query: 126 HALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFF 185 +L G+ +RD +L + GY +V V + G +A RG ++D+FP G E P R++FF Sbjct: 134 ASLYFLPGEESNRDEFLAKLVTLGYLNVPLVEDRGTFAVRGGIVDIFPPGFEQPVRIEFF 193 Query: 186 DDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP---- 241 D ++++R FD SQR+L +E + LLP+ E ++ + + Sbjct: 194 GDFVETIRAFDPLSQRSLAPLEELLLLPSREMVLTDEVLKSASHHIKARCDELEISPVAR 253 Query: 242 EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLA 301 + +Q+ +G P G+E+ PLF L LF Y +V + + L Sbjct: 254 RELLEQLQQGLYPTGVEWLLPLFHP-RLETLFDYAGDAVRVVLDPEALAEEDERFDRELV 312 Query: 302 RFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRV---QLKTEHLPTKAANANLGFQKL 358 E++ + P +L E ++ V L + L Q+ Sbjct: 313 TAEDQARERGDLFASPAEFFLTASETAGSIEAGRLVTIPYLTVTGESDEKTALALDIQEN 372 Query: 359 PDLAVQAQQKA------PLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRI 412 DL V + + L +LE V+ + G+ + L ELL+ + Sbjct: 373 TDLKVDVSSDSERILKPLVTRLNGWLEER-QRVIVACHQRGQAQRLYELLSHYPLPLNIS 431 Query: 413 MRLD----EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPD 468 R E D ++IG GF L +I E ++ G R RR + Sbjct: 432 DRPFPAERERDDGKVDVVIGDLSRGFRLPEEKLIVIAEEEIFGRRQKRRGV---SELRKK 488 Query: 469 TLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHL 528 ++ +LAEL G +VHL+HG+G Y G+ + G G++++L YA KLY+PV L+L Sbjct: 489 QIMTSLAELKPGDYMVHLDHGIGIYRGLQHISLSGCAGDFILLEYAGGDKLYLPVDRLNL 548 Query: 529 ISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDRE 588 + RY G + KLGG +W +A+ KA V+++A ELL IYA R EG AF + Sbjct: 549 VQRYVGAEGLEPRVDKLGGTSWEKAKGKARAAVQEMAGELLQIYAARQLHEGHAFSPPDD 608 Query: 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 Y+ F SF +E T DQ AI V+ DM MDRLVCGDVG+GKTEVAMR AF AV + Sbjct: 609 LYREFEASFAYEETSDQMSAIMDVIGDMTSAKPMDRLVCGDVGYGKTEVAMRGAFKAVMD 668 Query: 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 708 KQVAVLVPTT+LAQQH + F+ R +PV +EM+SRFR+ KEQ +IL +V +G ID++I Sbjct: 669 GKQVAVLVPTTVLAQQHLETFKARLGAYPVTVEMLSRFRTPKEQKEILEKVKKGAIDVII 728 Query: 709 GTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMS 768 GTH+LLQSDV FKDLGLLIVDEE RFGV HKE++K +A VDILTLTATPIPRTL M+M Sbjct: 729 GTHRLLQSDVTFKDLGLLIVDEEQRFGVTHKEKLKKYKAVVDILTLTATPIPRTLYMSMM 788 Query: 769 GMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAER 828 G+RDLSII TPP RLAVKTFV ++REA++RE+ RGGQ+++++N V++I AE Sbjct: 789 GIRDLSIIDTPPVDRLAVKTFVARSSDDLIREAVMRELRRGGQIFFVHNRVQSIMNWAEH 848 Query: 829 LAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 L +VPEA+IA+GHGQM E ELE+VM F H N+L+CTTIIE+G+DIP ANT+II+RA Sbjct: 849 LRRIVPEAKIAVGHGQMDEGELEKVMLGFMHGETNLLLCTTIIESGLDIPNANTLIIDRA 908 Query: 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATH 948 D FGLAQL+QLRGRVGRS +AYA+LL P A+++DA++RL+ I L +LGAGF LATH Sbjct: 909 DTFGLAQLYQLRGRVGRSKQRAYAYLLIPGEGAISSDARERLKIIQELTELGAGFRLATH 968 Query: 949 DLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRM 1008 DLEIRGAG++LG +QSG++ +GF LY ELLE A+ LK E L + E+ LR+ Sbjct: 969 DLEIRGAGDILGAKQSGNIAAVGFDLYTELLEEAIQNLKGE-----ERLERVEPEINLRI 1023 Query: 1009 PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQ 1068 P+ +P+D++ + N RL YK++ A++E E++E+ EL+DRFG LP A LL++ +LR Sbjct: 1024 PAFVPEDYVREPNQRLIIYKKLTQAESEEEVDEVMAELVDRFGKLPLAATYLLEVMKLRI 1083 Query: 1069 QAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSER 1128 ++ I E + + + F +K V P +IGL++ P+ Y+ RL + Sbjct: 1084 HFKRFLITMAEFDGRRLCLSFHQKTPVPPDTIIGLIRSNPKRYQFSPDFRLTAELADTSF 1143 Query: 1129 KTRIEWVRQFMREL 1142 + +E R ++ L Sbjct: 1144 EGVLEEARNLLKRL 1157 >UniRef50_A5N4J1 Mfd n=34 Tax=Clostridium RepID=A5N4J1_CLOK5 Length = 1173 Score = 1184 bits (3063), Expect = 0.0, Method: Composition-based stats. Identities = 381/1167 (32%), Positives = 638/1167 (54%), Gaps = 36/1167 (3%) Query: 3 EQYRYTLPVKAGE-QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 E + + + L+ ++ + L+ + + P ++I A +L++++ Sbjct: 15 EFKDIMAGIDRKKFPIAVFGLSESSRSYLIYAVYNQQDKPFLIITHSDVEARKLYEDLCF 74 Query: 62 FTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 + Q V E + Y+ + D+ RL + ++ + ++I V +L P Sbjct: 75 YLPQ-VYYFPTKEVVFYNIDAISGDLRWERLKVIREMLNPGKKIIITCVESLASVYVPVE 133 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 + + G ++ + +L GY ++ V G+++ RG ++D++ S+ PYR Sbjct: 134 LYKNYIFKISVGDKVDFKNISEKLIQCGYERMEMVERRGQFSIRGGIMDIYSPISQEPYR 193 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP 241 ++ F DE++S+R F+++SQR++E++ I + A E D+ IE+ +S+ ++ + Sbjct: 194 VELFGDEVESIRNFNLESQRSIEKMNNIEIFAAKEIIFDRERIEIGKSKIKEDLASIIEK 253 Query: 242 EHI-----------------YQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN 284 + + + I+ + P F+ E Y A V Sbjct: 254 LKENKNNEGMEKIKTITNKNLETLQETWTFESIDSFLPYFY-EHTSSFLDY--AKNYFVI 310 Query: 285 TGDLETSAERFQADTLARFENRGVDPMRPLLPPQS--LWLRVDELFSELKNWPRVQLKT- 341 D++ + + + EN R + P + L EL E + + L Sbjct: 311 VDDIKRCSGKLDSVYFEFLENYKNFLERGNVLPGQSKMLLDRSELIDEFNHREIIILDAI 370 Query: 342 -EHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGE 400 + + F ++ Q + + ++ + K ++ ++ + R E L + Sbjct: 371 AKSTKILPPKLIVNFTQITLNNYQGKLELLIEEI-KHKKSKSFKILILSGTRARGERLVD 429 Query: 401 LLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQD 460 L I ++E + G GF +++I + ++ G+ A+R+ Sbjct: 430 TLRDNGIESSYRDVVNEIKPGEVVITFGNQLKGFEYPEIKISVISDKEVFGK--AKRKNI 487 Query: 461 SRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLY 520 + + I++ EL G +VH+ HG+G Y G+ LE G +YL L Y + KLY Sbjct: 488 RKTNKKGTSKIKSFTELKPGDFIVHVNHGIGVYKGIKQLELQGHKKDYLELVYECEDKLY 547 Query: 521 VPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEG 580 VPV L ++ +Y G +N ++KLG WS+ ++KA + + ++A +L+ +YA R+ +G Sbjct: 548 VPVEQLDMVQKYIGSEGKNPKINKLGSSEWSKVKKKAKKSIEEMAEDLIKLYAIRSTLKG 607 Query: 581 FAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMR 640 + + D + F D FP+E TPDQ I + DM MDRL+CGDVG+GKTEVA+R Sbjct: 608 YKYSKDTIWQKQFEDEFPYEETPDQLSTIQDIKMDMESDKVMDRLLCGDVGYGKTEVAVR 667 Query: 641 AAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA 700 AAF AV + KQVA LVPTT+LAQQHY+NF RF+++PV+I+MISRF++A +Q + V Sbjct: 668 AAFKAVMDGKQVAFLVPTTILAQQHYNNFIQRFSDFPVKIDMISRFKTAAQQKATIKAVK 727 Query: 701 EGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIP 760 G +D+LIGTH++LQ DV+FKDLGLLI+DEE RFGV HKE+IK +R NVD+LTL+ATPIP Sbjct: 728 IGDVDVLIGTHRILQKDVQFKDLGLLIIDEEQRFGVSHKEKIKQIRKNVDVLTLSATPIP 787 Query: 761 RTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVE 820 RTL+M++ G+RD+S+I TPP R ++T+V EY+ ++R+A+LRE+ RGGQVY++YN VE Sbjct: 788 RTLHMSLVGVRDISVIETPPDERYPIQTYVVEYNDQLIRDAVLRELSRGGQVYFVYNRVE 847 Query: 821 NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880 NI++ A +A+L+PE ++A+ HGQM+ERELE ++ DF ++++LV TTIIETG+DI Sbjct: 848 NIKEMASYIAKLIPEGKVAVAHGQMQERELEGIIMDFMQNKYDILVSTTIIETGMDIQNV 907 Query: 881 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLG 940 NT++I AD GL+QL+QLRGRVGR++ AY +L K + A+KRL+ I +LG Sbjct: 908 NTMVIYDADKMGLSQLYQLRGRVGRTNRIAYCYLSYRKDKVLKEVAEKRLKVIKEFTELG 967 Query: 941 AGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ 1000 +GF +A DLEIRGAG ++G Q G M +G+ LY +LE+++ +K D Sbjct: 968 SGFKIALKDLEIRGAGNMMGSSQHGHMAAVGYDLYCRMLEDSIKLIKGE-----IDKEPV 1022 Query: 1001 QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTL 1060 +T VEL++ + +PD++I + ++ YK+IA+ + ++ +IK EL DRF +P L Sbjct: 1023 ETTVELKVDAYIPDNYIENEVQKIEVYKKIAAISSYEDMLDIKEELEDRFYDIPPSVYNL 1082 Query: 1061 LDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLK 1120 +DIA +R ++LGI ++ ++ V F ++ V+ L L++ L +L Sbjct: 1083 MDIAYIRSIGKELGIESIKESKNEVVFTFQNEDRVDKNVLKALVKTYFGKIVLKMNKKLS 1142 Query: 1121 FIQDLSERKTRIEWVRQFMRELEENAI 1147 F L + K E + ++E+ + I Sbjct: 1143 FGYTLKDVKR--ENLLSNVKEIVKYMI 1167 >UniRef50_A9KR33 Transcription-repair coupling factor n=11 Tax=Bacteria RepID=A9KR33_CLOPH Length = 1179 Score = 1183 bits (3061), Expect = 0.0, Method: Composition-based stats. Identities = 364/1148 (31%), Positives = 602/1148 (52%), Gaps = 34/1148 (2%) Query: 3 EQYRYTLPVKAGE-QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 E ++ + L+ + L+ ++E ++I + A +++++ Sbjct: 13 EFQVIEQSIQKNQFPLLITGCIDSQKCHLIHALSEGIVCK-LVITYNDIKAKEIYEDLKL 71 Query: 62 FTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 + D+ V + + Y + I+ R+ L L + ++ ++ M ++ P Sbjct: 72 Y-DRNVYLYPAKDIIFYSADIHGNAIVRERMRILKNLLERKPMTVVATIDGGMDKLLPLD 130 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 +L + +K+ + + L +L GY QV GE+A RG ++D++P+ E PYR Sbjct: 131 YLSDKIICIKEDSTIEIECLSEKLIHLGYERQGQVENPGEFAIRGGIIDIYPLTEEAPYR 190 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQW---------- 231 ++ + DE+DS+R FDV SQR++E V + PA E + A++ + Sbjct: 191 IELWGDEVDSIRTFDVGSQRSIERVSTAVIYPASEIILEPEALKNGLHKLNIEQKEYVGK 250 Query: 232 -------RDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN 284 + + + E + + ++ + F+ + F YF ++ ++ Sbjct: 251 LRGELKTEEAARIHQIVEEFKENLECLQGSLNLDSYIRFFY-DKTCSFFDYFANDSSIIF 309 Query: 285 TGDLETSAERFQADTLARFENRGVDPMRPLLPPQS--LWLRVDELFSELKNWPRVQLKTE 342 + AE+ +A E+ + + P + EL + L V + T Sbjct: 310 ADEPNRLAEKGEAVFTEFSESMVGRIEKGYILPSQMDVIYDYKELLANLSRRNSVLISTM 369 Query: 343 HLPTKA--ANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGE 400 A + + + L+ + + V+ S R L + Sbjct: 370 DHKVMQLAAKKKVDITVKSVNPYNNNFEILIKDLQNW-KRNGYRVILLSGSRTRAARLAQ 428 Query: 401 LLARIKIAPQRIMRLDEAS-DRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQ 459 L ++ +D +M G+ GF + L +I ESD+ G A +++ Sbjct: 429 DLRDNELPAIYSEDVDRIPVKGEIVVMHGSVHRGFEYPLIKLVIISESDIFG---AEKKK 485 Query: 460 DSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKL 519 ++ I++ +L+IG VVH HG+G Y G+ +E ++ +Y+ L Y L Sbjct: 486 KKKKPSYEGKQIQSFTDLNIGDYVVHENHGLGIYRGIEKIEVDKVSKDYIKLEYGGGGVL 545 Query: 520 YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 Y+ + L +I +YAG L+KL W + K V+++A EL+++YA R AK Sbjct: 546 YILATGLDVIQKYAGADARKPKLNKLNSVEWKNTKAKVKGAVKEIAKELVELYATRQAKA 605 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 G +F D + F + FP+E T DQ +AI+ DM MDRL+CGDVG+GKTE+A+ Sbjct: 606 GHSFCEDTVWQREFEEMFPYEETDDQLRAIDDTKRDMESKKIMDRLICGDVGYGKTEIAI 665 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 RAAF A+ + KQV LVPTT+LAQQHY+ F R N+P+ ++M+ RF++ +Q + L + Sbjct: 666 RAAFKAISDGKQVVFLVPTTILAQQHYNTFSQRMMNFPISVDMLCRFKTPAQQKKTLENL 725 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 +G++DILIGTH++L D++FK+LGLLI+DEE RFGV HKE+IK M+ ++D+LTLTATPI Sbjct: 726 KKGQLDILIGTHRVLSKDIQFKNLGLLIIDEEQRFGVTHKEKIKQMKGDIDVLTLTATPI 785 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTL+M++ G+RD+S++ PP RL ++TFV E++ ++REAI RE+ RGGQVYY++N V Sbjct: 786 PRTLHMSLVGIRDMSVLEEPPVDRLPIQTFVLEHNDEIIREAINRELARGGQVYYVHNRV 845 Query: 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 + + +A LVP+A +A HGQM E +LE++M +F + +VLV TTIIETG+DI Sbjct: 846 NGLDEITNTIARLVPDANVAFAHGQMHEHQLEKIMFEFINGEIDVLVSTTIIETGLDISN 905 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 NT+II+ AD GL+QL+QLRGRVGRS+ ++A+L+ K + A+KRL+AI +L Sbjct: 906 VNTMIIDNADQLGLSQLYQLRGRVGRSNRTSFAFLMYKRDKLLKEVAEKRLQAIKEFTEL 965 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 G+GF +A DLEIRGAG LLG +QSG ME +G+ LY ++L +AV LK D + Sbjct: 966 GSGFKIAMRDLEIRGAGNLLGAQQSGHMEAVGYDLYCKMLNDAVKGLKGEIS----DEDT 1021 Query: 1000 QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPART 1059 T +++ M + +P +I + +L YKRIA + E E +++ E++DRFG +P Sbjct: 1022 FDTSIDMDMDAFIPSTYIKNEMQKLDMYKRIAGIENEEEFMDMQEEMLDRFGDIPTSVNN 1081 Query: 1060 LLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRL 1119 LL+IA L+ A ++ + L + K + + LL K + ++ Sbjct: 1082 LLNIALLKSMAHQVYVSNLVQKGTEVKLSMYPKAKIKVEMIPELLLKVGNNLKMIPGATP 1141 Query: 1120 KFIQDLSE 1127 F ++ Sbjct: 1142 FFTYHMAN 1149 >UniRef50_B2I662 Transcription-repair coupling factor n=11 Tax=Xanthomonadaceae RepID=B2I662_XYLF2 Length = 1195 Score = 1182 bits (3058), Expect = 0.0, Method: Composition-based stats. Identities = 579/1195 (48%), Positives = 776/1195 (64%), Gaps = 56/1195 (4%) Query: 2 PEQYRYTLPVKAGEQRLL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI 59 P + L +AG+ R ++ A A +A A+ H GP++L+ D +A ++ ++ Sbjct: 3 PSSFPSPLLPRAGQLRAFWRAPVSPTALAWHIACAAQAHRGPLLLVTHDNHSAHQIEVDL 62 Query: 60 SQFT----DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 V+ DWETLPYD FSP +I+S RL+TL++LP++ RG+++VPV TLMQ Sbjct: 63 QTLLAHCSGLPVIGFPDWETLPYDQFSPDPNIVSQRLATLHRLPSLARGIVVVPVQTLMQ 122 Query: 116 RVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175 ++ P S++ G + K GQRL DA + +L+ AGYR+V QVM+ G++ RG LLD++PMG Sbjct: 123 QLAPLSYIVGGSFDFKVGQRLILDAEKQRLERAGYRNVPQVMDPGDFTVRGGLLDVYPMG 182 Query: 176 SELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF 235 +++P R++ D+EIDS+R FD +SQR+L +V+ I++LP E P D A +E + R+ F Sbjct: 183 TDVPLRIELLDEEIDSIRTFDPESQRSLNQVDVIHMLPGREVPLDPAVLERVLVRLRERF 242 Query: 236 EVKRDPEHIYQQVSKGTLPAGIEYWQPLFFS------EPLPPLFSYFPANTLLVNTGDLE 289 ++ +YQ + G P+GIEY+ PLFF LF Y A+ L++ + Sbjct: 243 DLDTRRSALYQDLKAGLAPSGIEYYLPLFFESGRGGKHATATLFDYLSADLLVLTAPGVS 302 Query: 290 TSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAA 349 +A+ F T+ R+E R D RPLLPPQ L+ D L L PR+++ + Sbjct: 303 NAADAFWGQTMQRYEQRRHDIERPLLPPQELYQSPDALRERLNRLPRIEVWSAEHAHIDK 362 Query: 350 NANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAP 409 L Q LP ALR FL + G V+ + S GRRE L ELLA + P Sbjct: 363 AEVLDEQPLPVATKDVSVGQ---ALRTFLADYAGRVLIAATSPGRREVLLELLATADLQP 419 Query: 410 QRIMRLDEA----------------------------------------SDRGRYLMIGA 429 + + S + + Sbjct: 420 EVLPDFRSFFLSAAEVSDLGEANRDSGNGVSGSNDADAAAFHVIASQGGSLPTFAITVAP 479 Query: 430 AEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHG 489 E GF +V +A++ E L ERV R+ R P+ +IR+L EL G P+VH +HG Sbjct: 480 LEDGFSLSVPPIAVLTERQLFPERVNPVRRSRRVGREPEAIIRDLGELSEGAPIVHEDHG 539 Query: 490 VGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDA 549 VGRY + T+ G+ GE++ + YA +LYVPV+ LHLISRY+G + E APLH LGG+ Sbjct: 540 VGRYRKLITMNVSGMPGEFVEIEYAKGDRLYVPVAQLHLISRYSGASPETAPLHSLGGEQ 599 Query: 550 WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAI 609 WS+A++KAAEKVRDVAAELL+I A+R A+ G A + DR Y+ F FPFE TPDQ AI Sbjct: 600 WSKAKRKAAEKVRDVAAELLEIQARRQARAGLALRIDRTMYEPFAAGFPFEETPDQLAAI 659 Query: 610 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 669 L D+ MDR+VCGDVGFGKTEVA+RAAF A KQVAVLVPTTLLA+QHY NF Sbjct: 660 ETTLRDLQSSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQVAVLVPTTLLAEQHYRNF 719 Query: 670 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 729 RDRFA++P+R+E++SRF+S KE L +V+EG +D+++GTH+LLQ DVKFKDLGL+IVD Sbjct: 720 RDRFADYPIRVEVLSRFKSTKEIKAELQKVSEGTMDVIVGTHRLLQPDVKFKDLGLVIVD 779 Query: 730 EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF 789 EE RFGVR KE +K++RANV +LTLTATPIPRTLNMAM+G+RDLSIIATPP RLAV+TF Sbjct: 780 EEQRFGVRQKEALKSLRANVHLLTLTATPIPRTLNMAMAGLRDLSIIATPPLNRLAVQTF 839 Query: 790 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERE 849 + +D+ ++ EA RE+ RGGQ+Y+L+NDVE+I + LA+LVPEARI I HGQM ERE Sbjct: 840 ITPWDNALLHEAFQRELARGGQLYFLHNDVESIGRMQRDLAQLVPEARIGIAHGQMPERE 899 Query: 850 LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 909 LERVM DF Q FNVL+ TTIIE+GIDIP ANTIII RAD FGLAQLHQLRGRVGRSHH+ Sbjct: 900 LERVMLDFQKQHFNVLLSTTIIESGIDIPNANTIIINRADRFGLAQLHQLRGRVGRSHHR 959 Query: 910 AYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMET 969 AYA+L+ P ++MT DA+KRLEAIAS+++LGAGF LATHDLEIRGAGELLGE+QSG M Sbjct: 960 AYAYLVVPDRRSMTADAEKRLEAIASMDELGAGFTLATHDLEIRGAGELLGEDQSGQMAE 1019 Query: 970 IGFSLYMELLENAVDALKAGREPSLEDLTSQQ-TEVELRMPSLLPDDFIPDVNTRLSFYK 1028 +GFSLY ELLE AV ++K G+ P L+ ++ EV+L +P+L+P+D++PDV+TRL+ YK Sbjct: 1020 VGFSLYTELLERAVRSIKQGKLPDLDAGQEERGAEVDLHIPTLIPEDYLPDVHTRLTLYK 1079 Query: 1029 RIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088 RI++A+ N L E+ VE+IDRFG+LP+ A+ L IA L+ QA LGI KLE E GG I Sbjct: 1080 RISTARDSNALRELNVEMIDRFGVLPETAKHLFAIAELKLQATALGISKLELGENGGRII 1139 Query: 1089 FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELE 1143 F K ++P +I L+QKQ + Y ++GP++LK L E R R + L Sbjct: 1140 FGAKPIIDPMAVIQLVQKQSKLYSMEGPSKLKLKLPLPEPADRFNAARGLLAALT 1194 >UniRef50_A8MK41 Transcription-repair coupling factor n=15 Tax=Clostridia RepID=A8MK41_ALKOO Length = 1174 Score = 1180 bits (3052), Expect = 0.0, Method: Composition-based stats. Identities = 376/1153 (32%), Positives = 625/1153 (54%), Gaps = 31/1153 (2%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLA 71 L L + + I + G V ++ + A ++++++ + + L Sbjct: 25 SRKSPIALYGLNDTQKSHIAYGIQDEIKGQVCIVTYNEMEARQIYEDLKFYAGDRAIFLP 84 Query: 72 DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 E + Y+ + ++ R+ + + +++ ++T ++ + P S + + + Sbjct: 85 SKEIMFYNMEATSRNAQEERMKAIETILEGSDCIVVTAIDTFLRLMPPPSAYTKNQISFQ 144 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 G + + + L GY D V E G+++ RG ++D+FP +E+P R++ F DEIDS Sbjct: 145 VGDTVDLEKVIENLVMQGYEREDIVEERGQFSIRGDIIDIFPSSAEMPVRVELFGDEIDS 204 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE-------------VK 238 +R F +QR+L+++EA+ + A E + +E + ++ +K Sbjct: 205 IRNFQPATQRSLDKIEAVKVYAAKETTIESFDVEAVILKLNQDYKNISKKLNQAAKENLK 264 Query: 239 RDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQAD 298 E + +++ G+E P + E L YF N L + + E+ + Sbjct: 265 NSLEELSEKLRSLGNFRGVEKLLPYIY-EKTTCLLHYFKDNALFIL-DEPSRLREKSEGY 322 Query: 299 TLARFENRGVDPMRPLLPPQS--LWLRVDELFSELKNWPRVQLKTEH--LPTKAANANLG 354 E+ + R + P L L E+ LK V L + + Sbjct: 323 IEEFKESFKILVERGEVFPGQGKLILSYGEVIDRLKEKRIVTLSLLPKAIKDFPPKEIIN 382 Query: 355 FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQR-IM 413 F P + + + +++ L+ + ++ R L E L +I + + Sbjct: 383 FDTRPMASFHGKLELLGKEIQR-LQYKGYKIALIPGTKERCLKLLEFLREKEIPAEYLVG 441 Query: 414 RLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRN 473 + ++ G GF A+I + ++ G +R+ + + +P I++ Sbjct: 442 EKQDLVTGEVVILSGNLRRGFEYVKNKFAVITDYEIYGVHKQQRKTNKTKDASP---IKS 498 Query: 474 LAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYA 533 +L +G VVH HG+G+Y G+ L+ G+ +YL + Y+ + LYVP + LI +Y Sbjct: 499 FIDLKVGDYVVHEGHGIGKYIGIEELKVEGVKKDYLKIRYSGEGFLYVPTDQMDLIQKYI 558 Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 G + L+KLGG W++ + K + + D+A EL+ +YA+R +G AF D + + F Sbjct: 559 GSDDAPPKLNKLGGSEWAKTKTKVKKAIEDMAGELIKLYAEREKTKGHAFSPDSDWQKQF 618 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 + FP+E TPDQ + I V DM + AMDRL+CGDVG+GKTEVA+RAAF AV + KQVA Sbjct: 619 EELFPYEETPDQLRCIEEVKQDMEKERAMDRLLCGDVGYGKTEVAIRAAFKAVGDSKQVA 678 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 LVPTT+LAQQHY+ F+ RF+++P+ +EM+SRF++A Q +I+ + G +DI+IGTH+L Sbjct: 679 FLVPTTILAQQHYNTFKQRFSDFPITVEMLSRFKNATAQKKIIENIRTGNVDIVIGTHRL 738 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 L D+++KDLGLLIVDEE RFGV+HKE +K ++ ++D+LTLTATPIPRTL+M+M G+RD+ Sbjct: 739 LSKDIEYKDLGLLIVDEEQRFGVKHKEALKKLKKSIDVLTLTATPIPRTLHMSMIGIRDM 798 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 S+I PP R V+T+V Y +V +AI RE+ RGGQVYY+YN V+ I + A L ELV Sbjct: 799 SVIEDPPEERFPVQTYVLGYSESMVVDAISRELARGGQVYYVYNRVQGIHQVANNLKELV 858 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 P+ R+A+ HGQM ERELE++M ++ + +++LV TTIIETG+DI NTIII+ AD GL Sbjct: 859 PQGRVAVAHGQMSERELEKIMLEYMNGEYDILVSTTIIETGMDISNVNTIIIQDADKLGL 918 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 +QL+QLRGRVGRS+ Q YA+L+ K ++ A+KRL+AI + G+GF +A DLEIR Sbjct: 919 SQLYQLRGRVGRSYRQGYAYLMYEKDKILSEVAEKRLKAIKEFTEFGSGFKIAMRDLEIR 978 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLP 1013 GAG LLG EQ G M IG+ LY++LLE V ++ E T +EL + + + Sbjct: 979 GAGNLLGGEQHGHMAAIGYDLYVKLLEETVGEMRGEYTEKFE-----DTTIELNVNAYIS 1033 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKL 1073 + +I + + ++ YK+IAS + + ++ ++ E+ DRFG +P AR LL I+ ++ A+ L Sbjct: 1034 EKYIGNPSHKIEIYKKIASIRNKEDMYRVEEEIEDRFGDIPLSARNLLLISYIKSLAKGL 1093 Query: 1074 GIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD--LSERKTR 1131 + + +K I+F + + + P + +L + + FI ++ Sbjct: 1094 KVTAITQKDKEIRIQFKDGSMLKPEGIGNVLHTYHRKVSFNATAEPYFIYKVLTMDQYKV 1153 Query: 1132 IEWVRQFMRELEE 1144 + +R + ++ Sbjct: 1154 LMELRDIIEKISG 1166 >UniRef50_Q6FCF0 Transcription-repair coupling protein n=17 Tax=Gammaproteobacteria RepID=Q6FCF0_ACIAD Length = 1171 Score = 1180 bits (3052), Expect = 0.0, Method: Composition-based stats. Identities = 573/1142 (50%), Positives = 778/1142 (68%), Gaps = 12/1142 (1%) Query: 10 PVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN 69 +KAGE+R +G L G++ A L EI ++H +V++ + Q+ +L E+ F Sbjct: 29 QLKAGEKRWIGSLFGSSGALLFKEIVQQHTTLLVIVTQNSQHLAQLESELE-FYGVKPTI 87 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 DWE LPYD SPHQDI+S RL+ L + Q GVL++ +TL QRV P ++ G Sbjct: 88 FPDWEILPYDRLSPHQDIVSERLAILSNM--PQTGVLLISASTLAQRVAPIGWVLGEHFD 145 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 ++ GQ+L + + +L AGY VD V +HGE+A RG+++D++ G E P R+D FDDEI Sbjct: 146 IQVGQKLDLEKEKLRLIQAGYHLVDTVYDHGEFAVRGSIMDIYASGQEQPIRIDLFDDEI 205 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF-EVKRDPEHIYQQV 248 D+L+ FD ++QRT E ++ +LPA EFP K +FR ++ + F IYQ V Sbjct: 206 DTLKFFDPETQRTTENLKQFRILPAKEFPL-KEGRSIFRERYAEAFPTANPKKNPIYQDV 264 Query: 249 SKGTLPAGIEYWQPLFFS----EPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFE 304 G G+E++ PLFF E +Y P N +++ L+ S D + R+E Sbjct: 265 LDGIASPGVEFYLPLFFEKGQMESQSYFTAYLPRNCIVITNDALDESLTSCWKDVVQRYE 324 Query: 305 NRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQ 364 +R + +P+L P+ L+L + + +LK +PR+ + +E + + NL + LAV Sbjct: 325 SRRHNIDQPILSPEHLFLMPNMVLEQLKQFPRIHVSSEIIAERVGGINLPVSQPVKLAVD 384 Query: 365 AQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY 424 +++ P + + K++ + PV+ ES GRRE+L + L + D + Sbjct: 385 PKKEHPFEVVTKYINEVNHPVLLVAESAGRRESLKDALRPSLGDIPNVEGFDAFVKQQYA 444 Query: 425 LMI--GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQP 482 + I + G V LA+I E+ L RV +RR+ ++ ++ + LIR+L EL IG P Sbjct: 445 IAITNAPLDRGLVL-SSQLAVISENQLYEHRVVQRRRKRQQEVSEEFLIRSLTELSIGAP 503 Query: 483 VVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPL 542 VVH+++GVGRYAG+ TLE E+L L YA+ AK+YVPV++LHLISRY+GG + APL Sbjct: 504 VVHIDYGVGRYAGLITLEIDDQDHEFLQLDYADAAKVYVPVTNLHLISRYSGGDPDLAPL 563 Query: 543 HKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETT 602 HKLG DAWS+A++KA E++ DVAAELL I A+R +K GFAF+ D+ Y F F +E T Sbjct: 564 HKLGTDAWSKAKRKALEQIHDVAAELLHIQARRQSKPGFAFELDQSPYMQFSSGFAYEET 623 Query: 603 PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLA 662 DQA AI A L DM MDRLVCGDVGFGKTEVAMRAAFLAV N+KQVAVLVPTTLLA Sbjct: 624 LDQANAIEATLHDMQLAKPMDRLVCGDVGFGKTEVAMRAAFLAVQNNKQVAVLVPTTLLA 683 Query: 663 QQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 722 QQHY++F+DRFA+WP+RIE++SRF S K + + ++ GK+DI++GTHKLLQ V+F D Sbjct: 684 QQHYESFKDRFADWPIRIEVLSRFGSNKTHQKNIEDLQTGKVDIVVGTHKLLQETVQFHD 743 Query: 723 LGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR 782 LGL+IVDEEHRFGVR KERIKAMRA+VD+LTLTATPIPRTLNMA SGMRDLSIIATPPAR Sbjct: 744 LGLMIVDEEHRFGVRDKERIKAMRADVDMLTLTATPIPRTLNMAFSGMRDLSIIATPPAR 803 Query: 783 RLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 842 RLAVKTFV+E+ VREAILRE+LRGGQVY+L+N+V++I++ AE + LVPEAR+A+ H Sbjct: 804 RLAVKTFVQEHTDDSVREAILRELLRGGQVYFLHNEVDSIERTAENIRNLVPEARVAVAH 863 Query: 843 GQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGR 902 GQMRERELE+VM F+H+ +NVLVC+TIIETGID+P ANTII+ERAD GLAQLHQLRGR Sbjct: 864 GQMRERELEQVMQQFYHKEYNVLVCSTIIETGIDVPNANTIIMERADKLGLAQLHQLRGR 923 Query: 903 VGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEE 962 VGRSHHQAYA+LL P K + DA+KRL+AI LGAGF LAT DLEIRGAGELLGE+ Sbjct: 924 VGRSHHQAYAYLLVPSIKHLKGDAEKRLDAIQRASTLGAGFMLATEDLEIRGAGELLGEQ 983 Query: 963 QSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNT 1022 QSGSM+ IG+SLYME+LE A A++ G+ P+ + S E+ L MP+L+PD+++ DV+ Sbjct: 984 QSGSMQAIGYSLYMEMLEKATKAIQKGKTPNFDAPLSLTAEINLHMPALIPDEYLGDVHQ 1043 Query: 1023 RLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNE 1082 RL FYKRI++ T+ +L+ I++ELIDRFG LP + L + +LR QA++LGI K++ N Sbjct: 1044 RLLFYKRISNTDTQEKLDNIRMELIDRFGTLPVSVKQLFHVHQLRLQAEELGITKIDLNS 1103 Query: 1083 KGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 +GG IEF++ V +I L+QKQP +YR++G RLK L E RI++ + +L Sbjct: 1104 QGGYIEFSQDTPVQAISIIQLMQKQPTYYRMEGGQRLKVTVQLQEYDKRIQFAHALLSKL 1163 Query: 1143 EE 1144 + Sbjct: 1164 IQ 1165 >UniRef50_B8FKE5 Transcription-repair coupling factor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKE5_DESAA Length = 1179 Score = 1179 bits (3050), Expect = 0.0, Method: Composition-based stats. Identities = 392/1174 (33%), Positives = 626/1174 (53%), Gaps = 42/1174 (3%) Query: 4 QYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT 63 QY G L L ++ A +A++ V+++AP + A L ++ F Sbjct: 14 QYLALTRESQGPVECL-GLERSSQAYFIAQLFREKKRTVLVLAPTKKEAKTLCADLDFFL 72 Query: 64 DQM------------VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPT-MQRGVLIVPV 110 + ++ + LP+ S H + ++R+S L ++ +++ Sbjct: 73 QDLKQPESALPGQGWILEFPAYHILPFKGISYHTETAANRISALSRMANSPDPAIVVTTP 132 Query: 111 NTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLD 170 + R+ P S L+ ++ G+ L RDA +L S GY V E G++ RG+++D Sbjct: 133 QAMASRLIPKSALNSFGELIMAGEELDRDAFVEKLVSGGYVKNLIVEEPGDFCVRGSIVD 192 Query: 171 LFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQ 230 ++ P R++FF DE+DS+R F +QRT++++E +LPA E K ++ + Sbjct: 193 VYGPPYSQPLRIEFFGDEVDSIRFFSPSTQRTIKKMEEAVILPATEAVVSKDRLQSVIHR 252 Query: 231 WRDTFEVKR----DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL--LVN 284 R+ + + + GIE + PL + LF Y PA+TL +++ Sbjct: 253 VREKAVLADMPVTKIREVVDSLKATQQFPGIEGFVPLLYENGGDSLFDYLPADTLCTVLD 312 Query: 285 TGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL----- 339 E++ D FE + R +PP L ++ L + Sbjct: 313 PVAASQEYEKYLEDVEENFETAQAEN-RLSIPPAMTHLPAEDFRKRLNRARPLTFPTLAV 371 Query: 340 -KTEHLPTKAANANLGFQKLPDLAVQ----AQQKAPLDALRKFL---ETFDGPVVFSVES 391 + A L + +L ++ L L ++ +V + S Sbjct: 372 TGPQEEEAGKARMQLHVETNTELVQNLKASKERDQLLKPLADWVNDKRDQGYSIVMACGS 431 Query: 392 EGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLG 451 + + E L LL + R +++G+ GFV +LA++ E+++ G Sbjct: 432 KMQAERLESLLTPYGVGLSRNQNWMTRPSARCQVVLGSLSSGFVWPAESLAVVTETEIFG 491 Query: 452 ERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLML 511 + R+ T P T + +LA+L G VVH++HG+ +Y G+ ++ GG+ ++L+L Sbjct: 492 ---PKHRRRKIETQRPRTELLDLAQLSQGDFVVHVDHGIAQYGGLVKMDLGGVANDFLLL 548 Query: 512 TYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDI 571 Y + KLY+PV +LI +Y E L KLGG AW + + + + V +A ELL + Sbjct: 549 EYRDGDKLYLPVDKSNLIQKYRTMGETAPALEKLGGKAWEKVKSRVKKSVEKIAGELLKL 608 Query: 572 YAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVG 631 YA R K+G+AF + F +F +E TPDQA+AIN VL+DM MDRL+CGDVG Sbjct: 609 YAVRKVKQGYAFSPTDSYFAEFEANFEYEETPDQAKAINDVLADMENRRPMDRLICGDVG 668 Query: 632 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKE 691 +GKTEVA+RA+F AV + KQ A + PTT+L++QHY F R+ +PV+I ++RFR A E Sbjct: 669 YGKTEVALRASFKAVSDSKQTAFVTPTTILSEQHYRTFLKRYEGYPVKIACLNRFRKAAE 728 Query: 692 QTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDI 751 + +IL + G IDI+IGTH +LQ V+FKDL L+I+DEE RFGV+HKE +K +RA VD+ Sbjct: 729 KKEILKGLENGDIDIVIGTHSVLQKSVQFKDLRLVIIDEEQRFGVKHKETLKKIRATVDV 788 Query: 752 LTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQ 811 L LTATPIPRTL+M+M G+RD+++I TPP +R + T+V ++D ++ EAI E+ R GQ Sbjct: 789 LALTATPIPRTLHMSMVGIRDITVINTPPEQRRPITTYVSKFDEVIAAEAIRAELARKGQ 848 Query: 812 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTII 871 V++++N V++I A RL LVPEAR+ + HGQM E LE+VM F + ++LVCT II Sbjct: 849 VFFVHNRVQSIDAMAGRLKRLVPEARVGVAHGQMSETMLEKVMIKFVNHEIDLLVCTAII 908 Query: 872 ETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLE 931 E+G+DIP ANTI+I RAD FGLAQ++QLRGRVGR QAYA+L P +T DAQ+RL+ Sbjct: 909 ESGLDIPAANTILINRADMFGLAQIYQLRGRVGRGDDQAYAYLFIPDESVLTRDAQRRLK 968 Query: 932 AIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGRE 991 + DLGAGFA+A DL+IRG G +LG QSG + +G+ +Y++L+E A+ LK Sbjct: 969 VLMEHSDLGAGFAIAMSDLQIRGGGTILGSAQSGQIAAVGYEMYLQLMETAIGQLKGEGS 1028 Query: 992 PSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFG 1051 E+ + + +P+ +IPDV+ RL Y+R++ + +++ E+ DRFG Sbjct: 1029 -----APPLDPEINVDFSAFIPEWYIPDVDQRLLAYRRLSRMEKVSDVGAFSKEMQDRFG 1083 Query: 1052 LLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHY 1111 +P L + + G++K++ K + + ++ N L+ ++++ + Sbjct: 1084 KVPQETNQLFFKIMFKILCRDAGVKKMDMAGKNLHLVISPEHQRNRDELLYMIKENFPRF 1143 Query: 1112 RLDGPTRLKFIQDLSERKTRIEWVRQFMRELEEN 1145 RL+ LK D K R V+ ++E+ Sbjct: 1144 RLNTEGVLKVALDTEAVKGRAVAVKNVLKEIAGR 1177 >UniRef50_C8W311 Transcription-repair coupling factor n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W311_DESAS Length = 1197 Score = 1178 bits (3049), Expect = 0.0, Method: Composition-based stats. Identities = 407/1187 (34%), Positives = 636/1187 (53%), Gaps = 56/1187 (4%) Query: 2 PEQYRYTLPVKAGEQ-RLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60 PE + + +++ L+ A + ++A + + ++I Q A L +++ Sbjct: 20 PEFIDLQNGLAKNRRCQVVSGLSSAQKSFVIAGLVQAMRQTALIITASDQEAAGLTEDLK 79 Query: 61 QFTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCP 119 VM LPY F+ ++I+ R+ L L + V+I PV LM+R+ P Sbjct: 80 NLLPDLKVMTFPARRLLPYQVFAYSKEILRQRMEVLESLCRGENPVIIAPVEALMRRLGP 139 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 + L + GQR + + L GY V+ V HG+++ RG +LD++P+ P Sbjct: 140 CADFCSARLELNVGQRYELPQMVSCLHEHGYERVNLVESHGQFSVRGGILDIYPITGINP 199 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR 239 R++FFDDE+DS+R+F+ +QR+ E + + + P E + E ++ +R Sbjct: 200 VRVEFFDDEVDSIRIFNPGTQRSEENMSQMQIFPVREMVVRQGDWERAYQALSQEYQYRR 259 Query: 240 DP----------------EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLL- 282 E + +S+ IE + P F+ E + L +Y A +L+ Sbjct: 260 RNLDKKSDSEVLDNLSRCEEVLDNISQAKYFDSIEQYLPYFYDEDI-TLLNYIKAESLVL 318 Query: 283 VNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTE 342 V+ + + R L + + ++ + + Sbjct: 319 VDEPSRLQENTDLLQRERTETYSELMKAGRVLPGQFKGYTDWAGIHKQITGFRAIYFSFL 378 Query: 343 HLPTK--AANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRRE---- 396 + + F + + + +R + + G V+ S+ + Sbjct: 379 PRQASLWRSCNTVNFPVKTMQNFMGKVEMLAEEIRHYKMSRYGVVLLVKNSDRAAQLVLS 438 Query: 397 ---------ALGELLARI-------KIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRN 440 L + L+ + + + ++ +GF Sbjct: 439 LRDYDLEALYLKKDLSEYPHLNVQEDMPDSKTKYKVDRGRGQIVILPMHLSNGFELVSGK 498 Query: 441 LALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLE 500 LA+I E+++ G R Q R + AEL G VVH+ HG+GRY G+ L Sbjct: 499 LAVITETEIYGHRKKPSVQRQRVQDKMEL----FAELKTGDYVVHVNHGIGRYDGVVQLT 554 Query: 501 AGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEK 560 G + +YL++ YA + KLY+P + +I +Y G L +LGG WSR + K E Sbjct: 555 IGDVKRDYLLVKYAGEDKLYIPTDQVEMIQKYLGSEGGTPKLSRLGGAEWSRVKSKVKEA 614 Query: 561 VRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPL 620 V+++A ELL +YA R A +G F D Q F +FP+E TPDQ +AI V +DM +P Sbjct: 615 VKEMAQELLALYAAREAVQGHPFSKDTVWQQEFEAAFPYEETPDQLKAIEEVKADMERPR 674 Query: 621 AMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRI 680 MDRL+CGDVG+GKTEVA+RAAF AV + KQVAVLVPTT+LAQQH++ F++RFA +PV I Sbjct: 675 PMDRLLCGDVGYGKTEVALRAAFKAVMDGKQVAVLVPTTILAQQHFNTFKERFAKYPVNI 734 Query: 681 EMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE 740 M+SRF +A+ Q QI+ E+ G++DI+IGTH+L+Q D+KFKDLGL++VDEE RFGV HKE Sbjct: 735 AMLSRFITARRQRQIVQELLLGQVDIVIGTHRLVQDDIKFKDLGLVVVDEEQRFGVTHKE 794 Query: 741 RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVRE 800 ++K +R NVD+LTLTATPIPRTL+M++ G+RD S++ TPP R+ V+T+V E + ++VRE Sbjct: 795 KLKQLRQNVDVLTLTATPIPRTLHMSIVGVRDTSLLETPPEDRIPVQTYVLEEEPVIVRE 854 Query: 801 AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ 860 AI RE+ RGGQVYY++N V ++ + A L LVP+A IAIGHGQM+E LE VM DF ++ Sbjct: 855 AIRRELGRGGQVYYVHNRVADLDRVAGWLKGLVPDAAIAIGHGQMKEDRLENVMLDFMNK 914 Query: 861 RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 920 +F++L+CTTIIETG+DI NT+I++ AD+ GLAQL+QLRGRVGR++ AYA+ K Sbjct: 915 KFDILLCTTIIETGLDIQNVNTLIVKDADYMGLAQLYQLRGRVGRTNRLAYAYCTFRGDK 974 Query: 921 AMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLE 980 M+ A+KRL A+ + G+G+ +A DLEIRGAG +LG EQ G + +GF LY LLE Sbjct: 975 VMSELAEKRLSAVREFTEFGSGYKIAMRDLEIRGAGNILGPEQHGHIAAVGFDLYCRLLE 1034 Query: 981 NAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELE 1040 AV K G E+ +T VEL + + +PD+++ D+N ++ YKR+A+ + L Sbjct: 1035 EAVLEAKGG-----ENAKPIETLVELPVTAYIPDEYVIDLNQKVELYKRMANIRDIKMLS 1089 Query: 1041 EIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWL 1100 E++ ELIDRFG +P+P LL + R++ A L I+ + ++FA + + L Sbjct: 1090 EMEDELIDRFGDIPEPVLNLLAVTRIKALAVNLKIKNISRINGYYRLQFAASHDLTGEKL 1149 Query: 1101 IGLLQKQPQHYRL---DGPTRLKFIQDLSERKTRI--EWVRQFMREL 1142 I + +K + +G ++ +++TR+ + + L Sbjct: 1150 ITVSEKYGGKVKFNHAEGEFEIRLQTVSKDQETRLTMSRLESLLMNL 1196 >UniRef50_A1ALB0 Transcription-repair coupling factor n=8 Tax=Desulfuromonadales RepID=A1ALB0_PELPD Length = 1177 Score = 1177 bits (3045), Expect = 0.0, Method: Composition-based stats. Identities = 447/1158 (38%), Positives = 661/1158 (57%), Gaps = 34/1158 (2%) Query: 10 PVKAG-EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF--TDQM 66 ++ G LL L G++ A ++A+I R ++++ PD A E++ F Sbjct: 19 ALERGSRHILLPGLKGSSPACILADILARSTRTLLVLTPDQAAADEFLRELTFFASPSHA 78 Query: 67 VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGH 126 ++ W+ P+ + SPH DI +RL TL++L +++PV +QRV Sbjct: 79 PLSFPAWDMAPFSATSPHPDISGARLDTLFRLQNGLARAVVMPVAAALQRVLGRGLFSES 138 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 + + G+ RD L +L GY +V V + G +A RG +LD+FP P R++FF Sbjct: 139 SCYLVSGEEFERDELLGRLVKMGYANVPLVEDRGTFAVRGGILDIFPPNLSAPVRIEFFG 198 Query: 187 DEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPE---- 242 D +++R FD +QR+L +E + LLP+ E + + + + P Sbjct: 199 DTAETIRTFDPLTQRSLHPLEELVLLPSREIILTDGVLADIAPRLKGCCDDLEIPANRRR 258 Query: 243 HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLAR 302 I + + G+EY QPL L +F Y P +L + A L Sbjct: 259 EILENLKSAVYFRGVEYLQPLLHP-GLETIFDYAPDASLALLDPQAIQEAITTFGRELED 317 Query: 303 FENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHL--PTKAANANLGFQKLPD 360 E P P Q L+L ++L ++N R++L L P A + Q D Sbjct: 318 GEATARQNGLPHSPRQELYLDGEQLRELMENRGRLELSGLLLEEPQGPAVITIPCQDNTD 377 Query: 361 LAVQAQQK--APLDALRKFLETF---DGPVVFSVESEGRREALGELLARIKIAPQRIMRL 415 L V ++ L L + L + V+ + + E L ELL +I Sbjct: 378 LRVTVSKETTQALTPLSRSLRQWLDSGFRVLIACHQNAQAERLRELLTPYRIPCAISEAS 437 Query: 416 -----------DEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRT 464 D + D L+ G GF L LI E +L G+RV R+ Sbjct: 438 FAETVQGEAQGDASPDGVVTLLQGDLSRGFRLLEARLVLIAEEELFGKRV---RRRGISE 494 Query: 465 INPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVS 524 + ++ +LAEL G +VH++HG+G Y G+ + G+ G++L+L Y KLY+PV Sbjct: 495 VRKKQILSSLAELKPGDHMVHVDHGIGLYRGLQHISVSGVGGDFLLLEYNGGDKLYLPVD 554 Query: 525 SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 L L+ RY G + L KLGG +W +++ KA + + ++A ELL+IYA+R EGF+F Sbjct: 555 RLALVQRYVGPEGSSPSLDKLGGVSWEKSKGKARKAIEELAGELLEIYAKRQICEGFSFS 614 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 E Y+ F SF +E TPDQ AIN VL+DM MDRLVCGDVG+GKTEVA+R AF Sbjct: 615 PPDEMYREFEASFAWEETPDQLSAINDVLADMQHSRPMDRLVCGDVGYGKTEVALRGAFK 674 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 A + KQV VLVPTT+LAQQH++ F +R +PVR+E +SRFR+ KEQ IL + +G+I Sbjct: 675 AALDGKQVGVLVPTTILAQQHFETFHERLKEYPVRVEALSRFRTPKEQKAILERLKKGEI 734 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 DI+IGTH+LLQ DV FKDLGLLI+DEE RFGV+ KER+KA RA VD++TLTATPIPRTL Sbjct: 735 DIVIGTHRLLQKDVAFKDLGLLIIDEEQRFGVKDKERLKAFRAVVDVMTLTATPIPRTLY 794 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 M+M G+RDLSII TPP RLAVKT V + +VREAI+RE+ RGGQV++++N V+ I K Sbjct: 795 MSMMGIRDLSIIDTPPVDRLAVKTIVARFSEELVREAIMRELRRGGQVFFVHNRVQTIAK 854 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 AE +A LVPEA+IA+GHGQM E+ELE+VM F H N+L+CTTIIE+G+DIP ANT+I Sbjct: 855 RAELIAALVPEAKIAVGHGQMGEQELEKVMLGFMHGETNLLICTTIIESGLDIPNANTLI 914 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 ++ AD FGL+QL+QLRGRVGRS + YA+LL P ++T+DA++RL+ + + +LGAGF Sbjct: 915 VDHADRFGLSQLYQLRGRVGRSSQRGYAYLLIPGEGSLTSDARERLKILQDISELGAGFR 974 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 +ATHD+EIRGAG++LG QSG++ IGF LY ++LE + ++ E + + E+ Sbjct: 975 IATHDMEIRGAGDMLGSRQSGTVIEIGFELYNQMLEETICRMRGE-----EMIEQVEPEI 1029 Query: 1005 ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA 1064 L++P+ +P+ ++ D RL YK++ A++E ++ +++ E+ DRFG P L + Sbjct: 1030 NLKVPAFIPETYVRDTGQRLVIYKKLTQAESEEDVLDVQNEVSDRFGKYPLATAYLFETM 1089 Query: 1065 RLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD 1124 +LR +KL +R+++ + K VI F + +P +I +++ +P+ YR RL Sbjct: 1090 KLRIMLKKLLVRQIDYDGKDVVISFHPRTPASPDTIIAMMRNEPKRYRFTPDYRLTCGVK 1149 Query: 1125 LSERKTRIEWVRQFMREL 1142 + + I+ R + L Sbjct: 1150 GTAFEEIIDAARTALLRL 1167 >UniRef50_A1HRU9 Transcription-repair coupling factor n=2 Tax=Veillonellaceae RepID=A1HRU9_9FIRM Length = 1109 Score = 1175 bits (3040), Expect = 0.0, Method: Composition-based stats. Identities = 402/1147 (35%), Positives = 605/1147 (52%), Gaps = 72/1147 (6%) Query: 4 QYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT 63 Q A + L+ LTG + L+A + +I ++ +L +++ Sbjct: 15 QQALAACTAANKASLIYGLTGTQKSVLLAAAYHKKPRATFIITVSGESLSQLKSDLATLL 74 Query: 64 DQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSF 122 V+ L + + + + ++ + RL +L + +++ +MQ+ P Sbjct: 75 PAAPVLELPALDFVTFSVTAKSLELTAQRLDIYSRLLGGEPVIVLATAEAIMQKAPPKEE 134 Query: 123 LHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRL 182 L + + G + + L L GY VDQV G+++ RG ++D+FP+ P RL Sbjct: 135 LVNSRVSLAAGGIVQLEKLLATLVRFGYERVDQVDNVGQFSARGGIIDIFPLNRPYPLRL 194 Query: 183 DFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPE 242 + F DEIDSLR FD +QR++ ++ +++P + Sbjct: 195 ELFGDEIDSLREFDPATQRSIGALDKADIMP----IIEPE-------------------- 230 Query: 243 HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLAR 302 S + SY PA+ +V D AR Sbjct: 231 ----------------------HSGKRTTVLSYLPADGCVVF-------------DEPAR 255 Query: 303 FENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKT--EHLPTKAANANLGFQKLPD 360 ++ + ++ + + + V L + P Sbjct: 256 VREAMAKLIKENPEIKRRVYTWPDIAAAAQAFNVVYLSLLLQKTPYTEPGEIHSITAKGI 315 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 Q + +D L+ +L+ PV+F + + L L + ++ +L Sbjct: 316 APFHRQMEMLVDELKAWLDRKLQPVIFMT-NRDKAVHLQHNLTQEGVSAVFSEQLTTLVP 374 Query: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 + +G GF LA++ E D+ G + R + + I +L +G Sbjct: 375 GTVMITVGVLAGGFELPHAKLAVLTEKDIFGRQKKGIRPRAAK----GQQITYFRDLKVG 430 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 VVH+ HG+G+YAG+ TLE GG+ +Y ++ YA + K+YVP +HL+ +Y G E Sbjct: 431 DYVVHVNHGIGKYAGVETLEVGGVHRDYFLIRYAGEDKIYVPTDQVHLLQKYIGAEGEVP 490 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 LH++GG W +A +A V D+A EL+ +YA R GFAF+ D + F ++FP+E Sbjct: 491 RLHRMGGTEWQKATSRAKAAVADLAKELIALYAARQVTPGFAFEPDTPWQKEFEEAFPYE 550 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 TPDQ QAI+ + DM P MDRL+CGDVGFGKTEVA+RAAF AV + KQVAVLVPTT+ Sbjct: 551 ETPDQLQAISEIKRDMEAPRPMDRLLCGDVGFGKTEVAIRAAFKAVMSGKQVAVLVPTTV 610 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LAQQHY F RFA + +++ISRFRS KEQ LA+V G++D+LIGTH+LL DV+F Sbjct: 611 LAQQHYQTFSSRFAGFGPVVDVISRFRSPKEQKATLAKVRAGQVDVLIGTHRLLNPDVQF 670 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 KDLGLLIVDEE RFGV KE++K R N+D+LTL+ATPIPRTL+M++ G RD+SII TPP Sbjct: 671 KDLGLLIVDEEQRFGVAQKEKLKKWRTNIDVLTLSATPIPRTLHMSLVGARDMSIIETPP 730 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 R V+T+V EY VVR+AI RE+ RGGQVY++YN V+ I K RL+E++P+ARI + Sbjct: 731 EERYPVQTYVVEYHEEVVRDAIRRELRRGGQVYFVYNRVQTIDKMHSRLSEILPDARIGV 790 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 HGQM E LERVM DF+ +++LVCT+IIE+G+D+P ANTII+ AD FGLAQL+Q+R Sbjct: 791 AHGQMSEDRLERVMLDFYEGNYDILVCTSIIESGLDVPNANTIIVYDADKFGLAQLYQMR 850 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGR+H AYA+ K +T A+KRL+AI +LGAGF +A DLEIRGAG +LG Sbjct: 851 GRVGRTHRMAYAYFTYQRDKVLTEVAEKRLQAIKEFAELGAGFKIAMRDLEIRGAGNILG 910 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 +Q G + ++GF +Y LL+ AV L+ G+ + +E + + L D+I D Sbjct: 911 PQQHGHILSVGFEMYCRLLDEAVQELRTGKVVQ----PPPEPVLEFNVDAYLSGDYISDA 966 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 ++ Y+RIA+ +TE + E+ ELIDRFG P P + L +AR++ A+ LGIR + Sbjct: 967 MHKIEVYQRIAAIRTEEHISELVDELIDRFGEPPQPVQNLFMVARIKNYARVLGIRSIFQ 1026 Query: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKT-RIEWVRQFM 1139 I+F ++ ++ ++ L P + ++W+ + + Sbjct: 1027 RRDHVEIQFTDRPNIGLDDIMALKSTYPGRVSIQPGPPQTLRLKTVNLTEPVLDWLVKVL 1086 Query: 1140 RELEENA 1146 R L E+A Sbjct: 1087 RPLSESA 1093 >UniRef50_C5EM54 Transcription-repair coupling factor n=3 Tax=Clostridiales RepID=C5EM54_9FIRM Length = 1186 Score = 1173 bits (3036), Expect = 0.0, Method: Composition-based stats. Identities = 402/1188 (33%), Positives = 636/1188 (53%), Gaps = 53/1188 (4%) Query: 1 MPEQYRYTLPVKAGE-QRLLGELTGAACATLVAEIAERHAGPV-VLIAPDMQNALRLHDE 58 + E + G+ + + L+ E+ E A P +++ D A ++D+ Sbjct: 3 LQEYDNLIQALNKGKGPLQVTGTLDSQKVHLMYELGEGAAFPWKLVVTYDDTRAKEIYDD 62 Query: 59 ISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVC 118 FT Q V + L Y + + R++ L L Q GV++ ++ LM + Sbjct: 63 FRNFTKQ-VWLYPAKDLLFYSADIHGNLMTRQRIAVLRHLMEDQGGVVVTTMDGLMDHLL 121 Query: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL 178 P +L A+ ++ GQ + + R +L + GY + QV G+++ RG ++D+FP+ E+ Sbjct: 122 PLQYLKEQAITVESGQVIDLNVWRQRLTAMGYERMAQVDGMGQFSIRGGIIDIFPLTEEV 181 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK 238 P R++ +DDE+DS+R FD++SQR++E+++A+ + PA E DK +E + R + Sbjct: 182 PLRIELWDDEVDSIRTFDLESQRSVEQLDAVTIYPAAEVVLDKKQLEAGTDRLRKEAKTY 241 Query: 239 RDP-----------------EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL 281 E + + +G G++ + F + + YFP Sbjct: 242 EKALREQHKTEEAHRIHSIIEELADGLREGWKLGGLDAYIRYFCPDTV-SFLEYFPKGES 300 Query: 282 LVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQS--LWLRVDELFSELKNWPRVQL 339 +V + E+ + L E+ + L P L V+E+ + ++ V L Sbjct: 301 VVYLDEPARLREKGETVELEFRESMVHRLEKGYLLPGQTELLYPVEEVMARVQRPLTVML 360 Query: 340 KT--EHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREA 397 + LP N + Q + + L ++ + V+ S R Sbjct: 361 TGLDQKLPGMKVNHKFSIDVKNVNSYQNSFEILIKDLTRW-KKEGYRVILLSASRTRASR 419 Query: 398 LGELLARIKIAPQRIMRLD----------------EASDRGRYLMIGAAEHGFVDTVRNL 441 L L + + + + G+ GF + Sbjct: 420 LASDLREYGLRAYCPDGAEPEMETGDGREAKDAHPKVKPGEIMVTYGSLHRGFEYPLLKF 479 Query: 442 ALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEA 501 I E D+ G V ++++ ++T I++ +EL +G VVH EHG+G Y G+ +E Sbjct: 480 VYITEGDMFG--VEKKKKRRKKTNYQGKAIQSFSELSVGDYVVHEEHGLGIYKGIEKVER 537 Query: 502 GGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKV 561 + +Y+ + Y + LY+P + L I +YAG + L+KLGG W + + + V Sbjct: 538 DKVIKDYIKIEYGDGGNLYLPATRLESIQKYAGADAKKPKLNKLGGTEWGKTKTRVKGAV 597 Query: 562 RDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621 +++A +L+ +YA R K GF + HD + F + FP++ T DQ AI+AV +DM Sbjct: 598 QEIAKDLVKLYAARQEKAGFQYGHDTVWQREFEELFPYDETDDQMDAIDAVKTDMESRRI 657 Query: 622 MDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIE 681 MDRL+CGDVG+GKTEVA+RAAF AV + KQV LVPTT+LAQQHY+ F R ++PVR++ Sbjct: 658 MDRLICGDVGYGKTEVALRAAFKAVQDSKQVVYLVPTTILAQQHYNTFVQRMKDFPVRVD 717 Query: 682 MISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKER 741 M+SRF + Q + L ++ +G +DI+IGTH++L D++FKDLGLLI+DEE RFGV HKE+ Sbjct: 718 MLSRFCTPARQKRTLEDLRKGMVDIVIGTHRVLSKDMQFKDLGLLIIDEEQRFGVAHKEK 777 Query: 742 IKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREA 801 IK ++ NVD+LTLTATPIPRTL+M+++G+RD+S++ PP R ++T+V EY+ +VREA Sbjct: 778 IKQLKENVDVLTLTATPIPRTLHMSLAGIRDMSVLEEPPVDRTPIQTYVMEYNEEMVREA 837 Query: 802 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR 861 I RE+ R GQVYY+YN V +I + A R+ LVPEA + HGQMRE ELER+M DF + Sbjct: 838 INRELARNGQVYYVYNRVTDIDEVANRIQALVPEAVVTFAHGQMREHELERIMADFINGE 897 Query: 862 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA 921 +VLV TTIIETG+DIP ANT+II AD GL+QL+QLRGRVGRS+ +YA+L+ K Sbjct: 898 IDVLVSTTIIETGLDIPNANTMIIHDADRMGLSQLYQLRGRVGRSNRTSYAFLMYRRDKL 957 Query: 922 MTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLEN 981 + +A+KRL+AI +LG+G +A DLEIRGAG +LG EQ G ME +G+ LY ++L Sbjct: 958 LKEEAEKRLQAIREFTELGSGIKIAMRDLEIRGAGNVLGAEQHGHMEAVGYDLYCKMLNE 1017 Query: 982 AVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEE 1041 AV ALK + D S +T VE + + +P +I + +L YKRI++ +TE+E + Sbjct: 1018 AVLALKGEK----PDEDSYETVVECDIDAYIPSSYIKNEYQKLDIYKRISAIETEDEYMD 1073 Query: 1042 IKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLI 1101 ++ EL+DRFG +P LL IA LR A + + ++ N + + +K + + Sbjct: 1074 MQDELMDRFGDIPRSVDNLLMIAGLRALAHQAYVTEVVINRQEIRLSMYQKARLQIEKIP 1133 Query: 1102 GLLQKQPQHYRLDGPTRLKFIQDLSERKTR-----IEWVRQFMRELEE 1144 L++ +L F K + +E ++ ++ L E Sbjct: 1134 ELVKAYKGDLKLVPGEVPAFHYIDRRNKNQDSLAMVEKAKEILKGLGE 1181 >UniRef50_C4Z4L4 Transcription-repair coupling factor (Superfamily II helicase) n=2 Tax=Clostridiales RepID=C4Z4L4_EUBE2 Length = 1206 Score = 1170 bits (3027), Expect = 0.0, Method: Composition-based stats. Identities = 377/1198 (31%), Positives = 608/1198 (50%), Gaps = 65/1198 (5%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 EQ L G ++ + IA + ++I D A + ++ F Sbjct: 15 EQLNKELAKDGGRTVMVSGCIDTQKLHFSSAIASNYNFQ-LVITSDEGKARDMAEDARFF 73 Query: 63 TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQL--------------------PTMQ 102 VM + + Y++ + I R+ + + + Sbjct: 74 NGGNVMYYPAKDVIFYNADVQGRQIAGERIRCIAAIIDRLNKSDIVKSGTEKSTEEASDG 133 Query: 103 RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEY 162 ++ ++ + + P + +KKG L + + +L + G+ V G++ Sbjct: 134 PLTIVTTIDGISDMLLPVDRFKRAVINLKKGDILDVEDMAKKLTAMGFERFGMVEAKGQF 193 Query: 163 ATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKA 222 A RG ++D+F E P R++ +DDEIDS+R FD DSQR++E ++ + PA EF + Sbjct: 194 AIRGGIIDIFSYTDEAPVRIELWDDEIDSIRAFDADSQRSIENYKSYTVFPATEFLFTED 253 Query: 223 AIELFRSQWR---------------DTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSE 267 IE + R + + + + ++ L G F++ Sbjct: 254 EIEQGIEKIRHEKDEQMKLFGADKRKRTKEQIEAGNHLNRMFDDALRTGDYSKFIYTFAD 313 Query: 268 PLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRG--VDPMRPLLPPQSLWLRVD 325 + L YFP L+ + E E+ ++ L +++ ++ Sbjct: 314 RVSSLAEYFPKGDTLIVVDEPVRLKEHSDMTFYEYSESMKNRLESGYVLPSQTHMFMDME 373 Query: 326 ELFSELKNWPRVQLKTEHL--PTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDG 383 + ++ L T + ++ + + + D +RK+ + Sbjct: 374 TAVLSMNGHKQLVLTTLEYTPEFFGIDYSMHIEARSISSYNNSFEYLSDDIRKY-KRNKY 432 Query: 384 PVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG-RYLMIGAAEHGFVDTVRNLA 442 V+ S R + + L R+ I +++ G + G+ GF ++ Sbjct: 433 AVLLVCSSRTRANRIVDDLGRLGIESFYTEDSNKSMAGGLVMVTYGSLHRGFEYPLQGFV 492 Query: 443 LICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAG 502 I E+D+ E+ +R + I EL+IG VVH +G+G+Y G+ ++ Sbjct: 493 CIAENDIFTEKKRKRVKKKEYD---GKNIAGFNELNIGDYVVHENYGIGQYKGIEKIKVE 549 Query: 503 GITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA-EENAPLHKLGGDAWSRARQKAAEKV 561 G+ +Y+ ++YA+++ LYV + L + ++AG E+ L+K+GG W + + K V Sbjct: 550 GVEKDYIKISYADNSNLYVLATQLDRLQKFAGSDVEKKPKLNKIGGSEWGKTKSKVHSAV 609 Query: 562 RDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621 +VA +L+++YA R EG+ F D Q F + FP+E T DQ AI DM Sbjct: 610 EEVAKDLVELYATRQRIEGYQFGPDTVWQQEFEEMFPYEETTDQLNAIEDTKHDMESRRV 669 Query: 622 MDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIE 681 MDRL+CGDVG+GKTE+A+RAAF AV KQVA LVPTT+LA QH+ F R ++PV + Sbjct: 670 MDRLICGDVGYGKTEIAIRAAFKAVQEGKQVAYLVPTTVLASQHFTTFEQRMKDFPVTVA 729 Query: 682 MISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKER 741 +S FR++ + + + E+ +G +DI+IGTH+LL DV FKDLGLLI+DEE RFGV HKE+ Sbjct: 730 QLSSFRTSAQNKETIEELKKGMVDIVIGTHRLLSKDVVFKDLGLLIIDEEQRFGVTHKEK 789 Query: 742 IKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREA 801 IK ++ NVD+LTL+ATPIPRTL+M+++G+RD+S++ PP R+ ++TFV E++ ++REA Sbjct: 790 IKKLKNNVDVLTLSATPIPRTLHMSLAGIRDMSVLEEPPVDRVPIQTFVTEHNDEMIREA 849 Query: 802 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR 861 I RE+ R GQVYY+YN V +I +AA + ELVP+A +A HGQM +RELE++M DF + Sbjct: 850 ITRELARNGQVYYVYNRVRSIDEAAAHIQELVPDANVAYAHGQMAKRELEKIMCDFVNGE 909 Query: 862 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA 921 +VLV TTIIETG+DI NT+IIE AD FGL+QL+QLRGRVGRS AYA+LL K Sbjct: 910 IDVLVSTTIIETGMDISNCNTMIIEDADRFGLSQLYQLRGRVGRSSRTAYAFLLYRRDKV 969 Query: 922 MTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLEN 981 +T A+KRL I D G+GF +A DLEIRGAG +LG Q G M +G+ LY ++L Sbjct: 970 LTEVAEKRLSVIREFADFGSGFKIAMKDLEIRGAGNVLGNSQHGHMAAVGYDLYCKMLNQ 1029 Query: 982 AVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEE 1041 AV+ LK + +T +++ + + +P +I +L YKRIA+ + +EL + Sbjct: 1030 AVNNLKGIKNEY-----EFETTIDVDVDAYIPATYIKSEYQKLDIYKRIAALENMDELSD 1084 Query: 1042 IKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK---------GGVIEFAEK 1092 ++ EL DR+G +P A LL IA ++ +A KLG+ +++G V+ K Sbjct: 1085 MRDELSDRYGSVPSCADNLLMIALIKSKAHKLGMIEIKGGVAHQESGTAVWRTVMTVYPK 1144 Query: 1093 NHVNPAWLIGLLQKQPQHYRLDGPTRLKFI-----QDLSERKTRIEWVRQFMRELEEN 1145 ++P + LL + ++ FI + + K ++ + M E Sbjct: 1145 AELDPDAIKKLLDEYGGAIQMRVDANPAFIWTVTKKKFTNAKEYLKGLNALMDVFMER 1202 >UniRef50_C4ZBV9 Transcription-repair coupling factor n=6 Tax=Clostridiales RepID=C4ZBV9_EUBR3 Length = 1177 Score = 1167 bits (3020), Expect = 0.0, Method: Composition-based stats. Identities = 390/1167 (33%), Positives = 618/1167 (52%), Gaps = 38/1167 (3%) Query: 8 TLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMV 67 K+ + A + ++ H +++ Q A L+DE S F D+ V Sbjct: 19 KTAEKSSGLISVTGCIDAQKSQMIYA-FGGHRKNKLIVTFGEQKAKELYDEYSFF-DKEV 76 Query: 68 MNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHA 127 + + L Y S + + R+ L + +R L+ + LM + P + + Sbjct: 77 VYYPSKDVLFYQSDIRGNLLTAERIRALKAIREQERVTLVTTFDALMNTMAPIEKMWENV 136 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 L +++GQ L ++ L GY QV G+++ RG +LD+FP+ E P R++ + D Sbjct: 137 LTLEQGQLLDLKEIQAALIRMGYEKEYQVQTMGQFSVRGGILDVFPLTEENPIRIELWGD 196 Query: 188 EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAA----IELFRSQWRDTFEVKRD--- 240 EID++R FD +SQ+++E ++ +++ PA E I+ +++ + + R Sbjct: 197 EIDTIRYFDCESQKSIENIDRVSIYPAAELVLSDEEKAGGIDKLKAEAKRVSDKLRKQMK 256 Query: 241 ----------PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLET 290 + + ++ + ++ AG++ + FF E + + YF + L+ +L Sbjct: 257 TEEAHRVTVMADELTEEWGELSMYAGMDAFLSYFFDERVG-ILDYFNPSDSLIFFDELTR 315 Query: 291 SAERFQADTLARFENRGVDPMRPLLPPQSL--WLRVDELFSELKNWPRVQLKTEHLPTKA 348 E+ + E+ + P + E+ ++L + + L Sbjct: 316 CTEQGKLTETEFSESMKQRLAMGYILPGQMNGLFTEKEIVAKLGKYSCIALAALDNKANG 375 Query: 349 AN--ANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIK 406 + + G + + L+++ + V+ S R + L E + Sbjct: 376 LHQLGSYGIHCQSVSPYNNSFELLIKDLKRY-KKNGYRVILLSGSRTRAKRLSEDITDQG 434 Query: 407 IAPQRIMRLD-EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTI 465 I D E + + G GF + A+I ESD+ G + ++++ Sbjct: 435 ITCFYTENYDHELFEGQIMVCYGKVRRGFEYPILKFAVITESDIFGAQQKKKKRHRTY-- 492 Query: 466 NPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSS 525 I++ +L +G VVH HG+G Y G+ LE +Y+ + Y + LY+ + Sbjct: 493 -EGEKIQSFTDLSVGDYVVHENHGLGIYRGIEKLEVDKKVKDYIKIEYQGGSNLYILATQ 551 Query: 526 LHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKH 585 L +I +YAG L+KLGG W+R + + V+ +A +L+ +YAQR + G+AF Sbjct: 552 LDMIQKYAGKDARKPKLNKLGGQEWTRTKNRVRGAVKQIAGDLVKLYAQREQQNGYAFGE 611 Query: 586 DREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA 645 D + F + FPF+ T DQ AI A +DM MDRL+CGDVG+GKTEVA+RAAF A Sbjct: 612 DTVWQREFEELFPFDETEDQILAIEATKTDMQSHKIMDRLICGDVGYGKTEVAIRAAFKA 671 Query: 646 VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID 705 V + KQVA L PTT+LAQQ YD F R ++PV ++++ RFRSA EQ + + ++ +G++D Sbjct: 672 VQDSKQVAYLAPTTILAQQIYDTFSQRMKDFPVNVDLMCRFRSAAEQKKTIEKLKKGEVD 731 Query: 706 ILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNM 765 I+IGTH++L DV+FKDLGLL++DEE RFGV HKE+IK M+ NVD+LTLTATPIPRTL+M Sbjct: 732 IIIGTHRILSKDVQFKDLGLLVIDEEQRFGVTHKEKIKQMKVNVDVLTLTATPIPRTLHM 791 Query: 766 AMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKA 825 ++ G+RD+S++ PP R+ ++T+V EY+ +VREAI RE+ R GQVYY+YN V +I Sbjct: 792 SLIGIRDMSVLEEPPMDRVPIQTYVMEYNDELVREAINRELARNGQVYYVYNKVRDIADI 851 Query: 826 AERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 885 +L ELVP+A +A HGQM+E ELER+M F + +VLV TTIIETG+DI NT+II Sbjct: 852 TAKLQELVPDATVAFAHGQMKETELERIMYRFINGEIDVLVSTTIIETGLDISNVNTMII 911 Query: 886 ERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFAL 945 AD+ GL+QL+QLRGRVGRS+ AYA+L+ K + A+KRL AI DLG+GF + Sbjct: 912 HDADNMGLSQLYQLRGRVGRSNRTAYAFLMYRRNKMLKEVAEKRLAAIKEYSDLGSGFKI 971 Query: 946 ATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVE 1005 A DLEIRGAG LLG EQSG ME +G+ LY ++L AV K + T V+ Sbjct: 972 AMRDLEIRGAGNLLGAEQSGHMEAVGYDLYCKMLSEAVKEAKGIE----DISDKFDTTVD 1027 Query: 1006 LRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIAR 1065 + + +P +I + +L YKRIA +TE E +E+ ELIDRFG P +LL +AR Sbjct: 1028 IVTDAYIPAGYIANEFQKLDIYKRIAGIETEEEKDEMLEELIDRFGEPPKSVLSLLRVAR 1087 Query: 1066 LRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDL 1125 L+ A + I +++ + E+ +NP + L+ + + + F DL Sbjct: 1088 LKALAHAVYITEIKQTGSLIKLTMFERARINPEKIPELIARYKSSLKFNMAENPYFTFDL 1147 Query: 1126 SER-----KTRIEWVRQFMRELEENAI 1147 + ++ V + + ++ + I Sbjct: 1148 KNGSVAKKRDVLDVVEELISQMRKELI 1174 >UniRef50_A8RWH1 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RWH1_9CLOT Length = 1200 Score = 1163 bits (3009), Expect = 0.0, Method: Composition-based stats. Identities = 385/1197 (32%), Positives = 619/1197 (51%), Gaps = 64/1197 (5%) Query: 1 MPEQYRYTLPVKAGE-QRLLGELTGAACATLVAEIAERHAGPV-VLIAPDMQNALRLHDE 58 + E +K+G+ + + L+ E+ E A +++ D A ++D+ Sbjct: 8 LQEYDNLVQALKSGKGPLQVTGTLDSQKVHLMYELGEASAFSWKLVVTYDDTRAKEIYDD 67 Query: 59 ISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVC 118 + FT V + L Y + + R++ L +L + GV++ ++ LM + Sbjct: 68 LRSFTS-RVWLYPAKDLLFYSADIHGNLMARQRIAVLRRLMEDREGVVVTTMDGLMDHLL 126 Query: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL 178 P +L ++ ++ GQ + D + +L + GY V QV G+++ RG ++D+FP+ E+ Sbjct: 127 PLKYLREQSITVESGQVIDLDVWKERLIAMGYERVAQVDGMGQFSIRGGIVDIFPLTEEV 186 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK 238 P R++ +DDE+DS+R FD++SQR++E++E I + PA E + + + Sbjct: 187 PVRIELWDDEVDSIRTFDLESQRSVEQLENITIYPAAEVVLSADQLAAGIRRLEKEEKTY 246 Query: 239 RDPE-----------------HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL 281 + + +G G++ + F + + YFP Sbjct: 247 EKALREQHKPEEAHRIHTIIGELRSGLDEGWRIGGLDAYIRYFCPDTV-SFLEYFPQGES 305 Query: 282 LVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQS--LWLRVDELFSELKNWPRVQL 339 ++ + E+ + L E+ + L P L E+ + ++ V L Sbjct: 306 VIFLDEPARLKEKGETVELEFRESMVHRLEKGYLLPGQTELLYPAAEILARMQKPYAVML 365 Query: 340 KT--EHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREA 397 + LP N + Q + + L ++ + V+ S R Sbjct: 366 TGLDQKLPGMKVNQKFSIDVKNVNSYQNSFEILIKDLTRW-KKEGYRVILLSASRTRASR 424 Query: 398 LGELLARIKIAPQRIM---------------------------RLDEASDRGRYLMIGAA 430 L L + + + + G Sbjct: 425 LASDLREYDLRAYCPDGREGESGNAGGEGAGSADTGNPGAVNTSVRKVRPGEILVTYGNL 484 Query: 431 EHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 GF + I E D+ G V ++R+ ++T I++ EL +G VVH EHG+ Sbjct: 485 HRGFEYPLLKFVFITEGDMFG--VEKKRKRRKKTNYQGKAIQSFTELSVGDYVVHEEHGL 542 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW 550 G Y G+ +E + +Y+ + Y + LY+P + L I +YAG + L+KLGG W Sbjct: 543 GIYKGIEKVERDKVIKDYIKIEYGDGGNLYLPATRLESIQKYAGAEAKKPKLNKLGGTEW 602 Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 ++ + + V+++A +L+ +YA R K GF + D + F + FP++ T DQ AI+ Sbjct: 603 NKTKTRVRGAVQEIARDLVKLYAARQEKAGFQYGTDTVWQREFEELFPYDETDDQMDAID 662 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 AV DM MDRL+CGDVG+GKTEVA+RAAF AV + KQV LVPTT+LAQQHY+ F Sbjct: 663 AVKKDMESRRIMDRLICGDVGYGKTEVALRAAFKAVQDSKQVVYLVPTTILAQQHYNTFV 722 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 R ++PVR++M+SRF + Q + L ++ +G +DI+IGTH++L D++FKDLGLLI+DE Sbjct: 723 QRMKDFPVRVDMLSRFCTPARQKRTLEDLRKGMVDIVIGTHRVLSKDMQFKDLGLLIIDE 782 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 E RFGV HKE+IK ++ NVD+LTLTATPIPRTL+M+++G+RD+S++ PP R ++T+V Sbjct: 783 EQRFGVAHKEKIKHLKENVDVLTLTATPIPRTLHMSLAGIRDMSVLEEPPVDRTPIQTYV 842 Query: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 EY+ +VREAI RE+ R GQVYY+YN V +I + A R+ LVP+A + HGQMRE EL Sbjct: 843 MEYNEEMVREAINRELARNGQVYYVYNRVTDIDEVAGRVQALVPDAVVTFAHGQMREHEL 902 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 ER+M DF + +VLV TTIIETG+DI ANT+II AD GL+QL+QLRGRVGRS+ + Sbjct: 903 ERIMADFINGEIDVLVSTTIIETGLDISNANTMIIHDADRMGLSQLYQLRGRVGRSNRTS 962 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 YA+L+ K + +A+KRL+AI +LG+G +A DLEIRGAG +LG EQ G ME + Sbjct: 963 YAFLMYKRDKLLREEAEKRLQAIREFTELGSGIKIAMRDLEIRGAGNVLGAEQHGHMEAV 1022 Query: 971 GFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI 1030 G+ LY ++L AV ALK + S T VE + + +P +I + +L YKRI Sbjct: 1023 GYDLYCKMLNQAVLALKGETL----EEDSYDTVVECDIDAYIPGRYIKNEYQKLDIYKRI 1078 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFA 1090 ++ +TE E +++ EL+DRFG +P LL IA +R A + + ++ N + + Sbjct: 1079 SAIETEEEYMDMQDELMDRFGDIPRSVENLLKIASIRALAHQAYVTEVVINRQEVRLTMY 1138 Query: 1091 EKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQ-----DLSERKTRIEWVRQFMREL 1142 +K + + +++ +L F + + + ++ + Sbjct: 1139 QKAKLQVDKIPDMVRSYKGDLKLVPGDVPSFHYIDRRNKNQDSLEMMGKAEEILKSM 1195 >UniRef50_B6BUC0 Transcription-repair coupling factor n=1 Tax=beta proteobacterium KB13 RepID=B6BUC0_9PROT Length = 1120 Score = 1162 bits (3006), Expect = 0.0, Method: Composition-based stats. Identities = 476/1119 (42%), Positives = 708/1119 (63%), Gaps = 22/1119 (1%) Query: 29 TLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL-ADWETLPYDSFSPHQDI 87 +E++ + P+V+ D A RL E+ F +V+++ DWETLPYDS SPH D+ Sbjct: 21 FYCSELSAK-NTPLVIFTKDSYVAARLQQEMLWFNQNLVVSMIPDWETLPYDSVSPHPDL 79 Query: 88 ISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDS 147 IS RL +L+ + +LI+P + + + P ++ ++ KGQ++ ++L+ L Sbjct: 80 ISDRLKSLFLVTQKAFDILIIPATSALNHLPPKQYITQNSFFYSKGQKVDLESLKMVLIE 139 Query: 148 AGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVE 207 GY +V +V GE+A RG L+DLFPMGS +PYR+DFFD EI+S++ FDV++Q+++ Sbjct: 140 NGYINVQKVFHPGEFAVRGGLIDLFPMGSTIPYRIDFFDTEIESIKTFDVETQKSIYPTN 199 Query: 208 AINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSE 267 I +LPA E P + +IE FR +R+ F IY +S AG+E++ PLF+ E Sbjct: 200 KIEILPARECPLTELSIETFRKNYRERFSGDPSKSPIYTNISNKIPFAGMEWYLPLFYQE 259 Query: 268 PLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDEL 327 +F Y P +TL+ L +S + + D RF+ D RP+L P+ + + + Sbjct: 260 -TNTIFDYLPDDTLIDVPFKLSSSIDHYWLDAQTRFKMYAYDIERPILNPEEIMMDSVKF 318 Query: 328 FSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVF 387 +L + N N P + K + ++ ++ Sbjct: 319 HQDLNRFK--------------NLNFDVIDNPLPKITIDYKDGYKNIADYINQCPKKIII 364 Query: 388 SVESEGRREALGELLARIKIAPQRIMRLDEASD-RGRYLMIGAAEHGFVDTVRNLALICE 446 S ES GRRE + ++L ++ +R ++ L+ + GF + E Sbjct: 365 SAESLGRRETIHKMLTECDLSLKRSESINILDPVIDHLLIQSPLKEGFS--DEYFEVFTE 422 Query: 447 SDLLGERVARRRQD-SRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGIT 505 DL + + + + + N + +I++L+E+ +G PVVH HGVGRY G+ L+ G Sbjct: 423 YDLFPDFIHQEKSKYKSKDYNAEVVIKDLSEISVGDPVVHENHGVGRYQGLVQLDMLGSI 482 Query: 506 GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVA 565 E+L+LTY + KLYVPV+ L+ ISRY GG E+APLHKLG W + ++KA ++V D A Sbjct: 483 NEFLLLTYEKEDKLYVPVTQLNSISRYTGGPIESAPLHKLGSGQWEKEKRKALKQVYDTA 542 Query: 566 AELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRL 625 AELL++YA R K+G K D +YQ F + FPFE TPDQ AI +V+ DM MDRL Sbjct: 543 AELLNLYALREKKKGLVSKIDFLEYQKFANEFPFEETPDQMLAIESVIKDMESARPMDRL 602 Query: 626 VCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISR 685 +CGDVGFGKTEVAMRAAF+++ N++QV +LVPTTLLA QHY+NF DRF+++PV IE ISR Sbjct: 603 ICGDVGFGKTEVAMRAAFISIMNNRQVIILVPTTLLASQHYNNFVDRFSSFPVEIEEISR 662 Query: 686 FRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAM 745 F+S K+Q ++L ++A GK+DI+IGTH+LLQ D+K ++GL+IVDEEHRFGVR KE +K Sbjct: 663 FKSNKQQNEVLEKLANGKVDIVIGTHRLLQKDIKIDNIGLIIVDEEHRFGVRQKEMLKKF 722 Query: 746 RANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILRE 805 + N D L LTATPIPRTL+M++ G+RD SII+TPP +RL++KT V+ + +++EA+ RE Sbjct: 723 KTNTDFLALTATPIPRTLSMSLEGLRDFSIISTPPQKRLSIKTMVKSFSEGIIKEALTRE 782 Query: 806 ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 865 RGGQ Y+L+NDV +I +E+L +++P+A++AI HGQM+E+ELERVM DFH QRFN+L Sbjct: 783 FNRGGQAYFLHNDVSSIYAISEKLTKIMPDAKVAIAHGQMKEKELERVMQDFHQQRFNLL 842 Query: 866 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTD 925 +CTTIIETGIDIPT+NTIII AD FGL+QLHQLRGRVGRSHHQA+A+LL +++T+ Sbjct: 843 LCTTIIETGIDIPTSNTIIINNADRFGLSQLHQLRGRVGRSHHQAFAYLLIDENRSLTSK 902 Query: 926 AQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDA 985 A+KRLEAI LEDLG+G+ LA HDLEIRGAGE+LG++QSG + IGFS+Y+++L AV Sbjct: 903 AKKRLEAIQYLEDLGSGYFLAMHDLEIRGAGEILGDQQSGEIHEIGFSMYLKMLNRAVTH 962 Query: 986 LKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVE 1045 LK + ++ ++ + P++L + + D N RL YKR++S ++ +L+ IK E Sbjct: 963 LKNNETLDINADYNENNDINIHAPAILTNQYCGDPNERLVIYKRLSSCESLEDLQMIKEE 1022 Query: 1046 LIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQ 1105 LIDRFG+ P+ L I +R + L + K++ +K + F EKN+++P +I L+Q Sbjct: 1023 LIDRFGVAPEQTENLFIIHHIRIITKDLDVTKIDAGKKTISLNFREKNNLDPLKIIDLVQ 1082 Query: 1106 KQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 H +LDGP ++ D + ++ ++ + E+++ Sbjct: 1083 TNK-HIKLDGPNKITLAGDFEDPFDKLNNIKSLVGEIKD 1120 >UniRef50_C4WBZ1 Transcription-repair coupling factor n=3 Tax=Staphylococcus RepID=C4WBZ1_STAWA Length = 1169 Score = 1155 bits (2988), Expect = 0.0, Method: Composition-based stats. Identities = 393/1163 (33%), Positives = 641/1163 (55%), Gaps = 29/1163 (2%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDE-IS 60 ++++ V + L+ L+ +A AT++AE ++L+ ++ A ++ + + Sbjct: 12 DKRFQELDQVFGQDNILVTGLSPSAKATIIAEKYLADQKQMLLVTNNLYQADKIEADILQ 71 Query: 61 QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 + + + + + + + ++S R+ TL L ++G+ IVP+N L + + P Sbjct: 72 YVSGEEIYKYPVQDIMTEEFSTQSPQLMSERVRTLTALAHGEKGLFIVPLNGLKKWLTPV 131 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 H + + G + D +L + GYR V GE++ RG ++D++P+ P Sbjct: 132 EMWRNHQMTLNVGDDIDVDDFLNKLVNMGYRRESVVSHIGEFSLRGGIIDIYPLIG-SPV 190 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R++ FD EIDS+R FDV++QR+ + +E++++ A ++ I ++Q + +E R Sbjct: 191 RIELFDTEIDSIRDFDVETQRSNDNLESVDITTASDYIITDEVISHLQTQLKAAYEDTRP 250 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFS------------EPLPPLFSYFPANTLL-VNTGD 287 + + ++ FF + + YF + ++ V+ + Sbjct: 251 KIEKSVRNDLKETYESFKLFESTFFDHQLLRRLVAFMYDQPSTIIDYFANDVVIAVDEYN 310 Query: 288 LETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPR--VQLKTEHLP 345 E + F + ++ + +++ D + L P L T +P Sbjct: 311 RIKETEETLTTEVDDFISNLIESGNGFI--GQSFMQYDGFETLLDERPVAYFTLFTSSMP 368 Query: 346 TKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARI 405 + + + F P Q ++F+ D +V VE+E + E + +L + Sbjct: 369 VELDHI-IKFSCKPVQQFYGQYDIMRSEFQRFIHN-DYAIVVLVETETKVERIQSMLNEM 426 Query: 406 KIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTI 465 I ++ ++ G+ GF L +I E +L ++++ +T+ Sbjct: 427 HIPV-VTHIDQASTSGQAVVVEGSLSEGFELPYMQLVVITERELFKT-KQKKQRKRTKTM 484 Query: 466 NPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSS 525 + I++ +L++G VVH+ HGVGRY G+ TLE G +Y+ L Y +L+VPV Sbjct: 485 SNAEKIKSYQDLNVGDYVVHVHHGVGRYLGVETLEVGEQHRDYIKLQYKGTDQLFVPVDQ 544 Query: 526 LHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKH 585 + + +Y +++ L+KLGG W + + K + V D+A EL+D+Y QR G+ F Sbjct: 545 MDQVQKYVASEDKSPRLNKLGGTEWKKTKAKVQQSVEDIADELIDLYKQREMSVGYQFGP 604 Query: 586 DREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA 645 D E+ F FP+E TPDQ+++I + DM + MDRL+CGDVG+GKTEVA+RAAF A Sbjct: 605 DTEEQSTFELDFPYELTPDQSKSIEEIKGDMERERPMDRLLCGDVGYGKTEVAVRAAFKA 664 Query: 646 VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID 705 V KQVA LVPTT+LAQQHY+ +R ++PV I++ISRFRS KE + + G +D Sbjct: 665 VMEGKQVAFLVPTTILAQQHYETLIERMQDFPVEIQLISRFRSTKEVKETKEGLKSGYVD 724 Query: 706 ILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNM 765 I++GTHKLL D+ +KDLGLLIVDEE RFGVRHKERIK ++ NVD+LTLTATPIPRTL+M Sbjct: 725 IVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERIKTLKNNVDVLTLTATPIPRTLHM 784 Query: 766 AMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKA 825 +M G+RDLS+I TPP R V+T+V E ++ ++EA+ RE+ R GQV+YLYN V++I + Sbjct: 785 SMLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEK 844 Query: 826 AERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 885 E+L L+P+A IA+ HGQM ER+LE M F + +++LV TTIIETG+D+P ANT+II Sbjct: 845 REQLQMLMPDANIAVAHGQMTERDLEETMLSFINHEYDILVTTTIIETGVDVPNANTLII 904 Query: 886 ERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFAL 945 E AD FGL+QL+QLRGRVGRS YA+ L P K + A++RL+AI +LG+GF + Sbjct: 905 EEADRFGLSQLYQLRGRVGRSSRIGYAYFLHPANKVLNETAEERLQAIKEFTELGSGFKI 964 Query: 946 ATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVE 1005 A DL IRGAG LLG++Q G ++++GF LY ++LE AV+ + +E + + EVE Sbjct: 965 AMRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKEETPDV---PDVEVE 1021 Query: 1006 LRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIAR 1065 L + + LP ++I + ++ YK++ ++E +L +IK ELIDRF P LLDI Sbjct: 1022 LNLDAYLPAEYIQNEQAKIEIYKKLRKVESEEQLMDIKDELIDRFNDYPTEVERLLDIVE 1081 Query: 1066 LRQQAQKLGIRKLEGNEKGGVIEFAE--KNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQ 1123 ++ A GI K++ K I +E ++ L Q + ++ Sbjct: 1082 IKTHALHAGITKIKDMGKQIQIFLSETSTADIDGEALFKNTQPLGRTMKVGVENG-AMKV 1140 Query: 1124 DLSERKTRIEWVRQFMRELEENA 1146 L++ K ++ ++ ++ +EE+ Sbjct: 1141 TLTKSKQWLDNLKFLVKCIEESM 1163 >UniRef50_A8SUU5 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SUU5_9FIRM Length = 1186 Score = 1152 bits (2980), Expect = 0.0, Method: Composition-based stats. Identities = 380/1147 (33%), Positives = 623/1147 (54%), Gaps = 32/1147 (2%) Query: 24 GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSP 83 G L+ +++ + +++ + A +L+ ++ F + V + L + + Sbjct: 37 GTDRVFLMNAVSDESSVK-LVLTYSDKRAEQLYSDLR-FYSRDVYMYPAKDILFFSADVH 94 Query: 84 HQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRT 143 I R+ L +L + + ++ V+ L ++ S+++ + + + QRL D LR Sbjct: 95 GNAITRKRMDVLRRLVSGEPCTIVATVDALFDKIPALSYMNKYIINICTAQRLDVDDLRQ 154 Query: 144 QLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTL 203 +L + GY VD V E G++A RG ++D++P+ E PYR+D +DDE+D+++ FD +SQR++ Sbjct: 155 KLSALGYDKVDNVEEPGQFAVRGGIIDIYPLTEECPYRIDMWDDEVDTIKTFDAESQRSI 214 Query: 204 EEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE-----------------VKRDPEHIYQ 246 E V++I + PA E + I + + +KR+ + + Sbjct: 215 ETVDSIVIYPAGEIVLSQDRINRGIRKIEAELKPYAQKLKESFHTEAYARIKREVAELKE 274 Query: 247 QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENR 306 Q+++ + G++ + F+S+ + L P ++ ++ + S +T R Sbjct: 275 QLTEFSAVYGVDSYVDYFYSDTV-SLIDCLPDDSYVLIDETRKVSDRAATDETGFRSSMV 333 Query: 307 GVDPMRPLLPPQ-SLWLRVDELFSELKNWPRVQLKTEHLPTKAANANL--GFQKLPDLAV 363 +LP Q ++ D++ + K + V + + + Sbjct: 334 HRLEGGYVLPGQMNVMYSYDDVIDKAKKYNVVGFDAFDGRDDRISYAHKTEIECHEVHSY 393 Query: 364 QAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE-ASDRG 422 + + +R + + V+F S + + + L I + D+ + R Sbjct: 394 RNSFDTLVADIRSW-KKNKNSVLFVSPSSVGAKRMVDNLMDADIICHYLSDADKVLTPRE 452 Query: 423 RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQP 482 M G GF+ +L ++ E D+ R + ++ ++ +I++ +++ +G Sbjct: 453 IAAMAGRLRSGFMIPAMHLVVVSEGDVFSSRSSSGKRTQKKLPYSGEIIKSFSDVSVGDY 512 Query: 483 VVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPL 542 VVH ++G+G Y G+ +E G +YL++ YA KLYV S I +Y + Sbjct: 513 VVHEKYGIGVYKGIEKIEVDGALKDYLVIEYAEGGKLYVLASETDRIQKYRSKEGRPPKI 572 Query: 543 HKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETT 602 ++LGG+ W + R + V +VA L+ +YA+R +KEG A+ D E + F ++FP++ T Sbjct: 573 NRLGGNEWQKVRNRVKGHVDEVAEHLVKLYAERQSKEGHAYSPDSEWQKEFEETFPYKET 632 Query: 603 PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLA 662 DQ +AI V +DM MDRLVCGDVGFGKTEVA+RAAF AV + +QVA LVPTT+LA Sbjct: 633 DDQLRAIADVKADMESSRIMDRLVCGDVGFGKTEVAIRAAFKAVGDSRQVAYLVPTTILA 692 Query: 663 QQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 722 +QHY+ F +R ++PV I ++ RF + KE L E+ EGK+DI+IGTH+LL DV+FK+ Sbjct: 693 EQHYETFTERMKDYPVVIRLLCRFCTQKEIKNTLRELKEGKVDIVIGTHRLLSKDVEFKN 752 Query: 723 LGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR 782 LGLLI+DEE RFGV HKE+IK M+ NVD+LTLTATPIPRTL+M++ G+RD+S++ P Sbjct: 753 LGLLIIDEEQRFGVNHKEKIKEMKTNVDVLTLTATPIPRTLHMSLVGIRDMSLLEEAPVD 812 Query: 783 RLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 842 R ++T+V EYD + REAI RE+ R GQVYY+YN V +I++ + +LVP A + H Sbjct: 813 RRPIQTYVMEYDKELAREAIARELARQGQVYYVYNRVNDIEQFTAEVQKLVPNANVEFAH 872 Query: 843 GQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGR 902 GQM R LE +M F+ + +VLVCTTIIETG+DIP ANTIII A++FGLAQL+QLRGR Sbjct: 873 GQMDGRTLEDIMYRFNKKEIDVLVCTTIIETGLDIPNANTIIIHDANNFGLAQLYQLRGR 932 Query: 903 VGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEE 962 VGRS A+A++ K ++ A+KRL AI DLG+G ++ DL IRGAG +LGE Sbjct: 933 VGRSDRSAFAFMFYRRNKVISEVAEKRLRAIKEYTDLGSGVKISKADLNIRGAGSVLGES 992 Query: 963 QSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNT 1022 QSG+ E +G+ LY ++L +AV + +TE+++ + S +P+ ++ + Sbjct: 993 QSGNYEVVGYDLYCKMLNDAVRERRGDT-----VFHDYETEIDIPIDSFIPETYVKNDFI 1047 Query: 1023 RLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNE 1082 +L KRI+ K E+E +I ELIDRFG +PD LLD A LR +A I ++ + Sbjct: 1048 KLELCKRISLIKNEDEYNDIIDELIDRFGDIPDETMNLLDAALLRARAYVCYITRIWYRD 1107 Query: 1083 KGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTR--IEWVRQFMR 1140 K ++N + L+ + + +F+ LS+ + R + + Sbjct: 1108 GLLRFSMYNKANINVDGIEDLVNNYMGRMKFQMGAKPEFVLKLSKEEKRDILRQAEFVVA 1167 Query: 1141 ELEENAI 1147 ++ + I Sbjct: 1168 DISQLLI 1174 >UniRef50_A5CVJ9 Transcription-repair coupling factor n=4 Tax=Bacteria RepID=A5CVJ9_VESOH Length = 1145 Score = 1150 bits (2974), Expect = 0.0, Method: Composition-based stats. Identities = 488/1153 (42%), Positives = 740/1153 (64%), Gaps = 19/1153 (1%) Query: 1 MPEQYRYTLPVKA---GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHD 57 MP Y Y+ VK G + G L G+A A + E A + +++IA D+ + + Sbjct: 2 MP--YLYSNKVKCFELGRKMYWGSLYGSADALALIEFANQ-QHIILVIANDIVHFDNFYK 58 Query: 58 EISQF-TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQR 116 + + TD ++ +WE L YD FSPH DI SSRL TL +L +++RG++I + +L Sbjct: 59 SLKFYNTDLEILKFDNWEVLAYDYFSPHPDITSSRLKTLSKLKSLKRGIVITTLESLFSH 118 Query: 117 VCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176 +CP F ++L ++ +++ D +L GY+HV VMEHGE+ R +L+DL+PMG+ Sbjct: 119 LCPLEFSKKYSLNIRINDKINPDTFSEKLLKIGYKHVITVMEHGEFNMRNSLIDLYPMGT 178 Query: 177 ELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE 236 + YR++ F+ +++S+R F+ +QR+ ++ I LLPA EF TD +IE F++ ++ F Sbjct: 179 KTAYRINLFNQKVESIRAFNTSTQRSKTKIPEITLLPAREFATDNTSIEYFKTNYKKIF- 237 Query: 237 VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQ 296 D IY +VS+G LP GIE++ PLFF LF Y NT++ + + ++ Sbjct: 238 --NDNGFIYTEVSEGRLPGGIEFYLPLFF-HTTNTLFDYLADNTIIATSKEFSNLVDKTY 294 Query: 297 ADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQ 356 + RFEN R L Q ++L + LFSE+K ++ + T L K + N Sbjct: 295 NEIRERFENAKKSLDRAPLDIQRVFLSKELLFSEVKKKSQIIISTSKLENKKQHFNFNSS 354 Query: 357 KLPDLAVQAQQKAPLDALRKFLETF----DGPVVFSVESEGRREALGELLARIKIAPQRI 412 P + ++ Q PL F++ F + ++ ES R+ L +LL + + Sbjct: 355 LPPPVRIELQTNNPLSKFSTFVKRFTNKQNKKILIVCESLDRQNVLSDLLINHNLNTYSV 414 Query: 413 MRLDEASD--RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTL 470 E + + ++ HG + N+A+I E DL G+ V ++++ + D Sbjct: 415 KSWHEFTTSSKSLNIIHEDLIHGLLI--HNIAIITEEDLFGQEVVQQQRRHTKHKYFDVA 472 Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 I++L E+ IG +VH +GVGRY G+ T + ++L+L YAN+AKL VP+ S +LIS Sbjct: 473 IKSLVEIKIGDAIVHENYGVGRYLGLKTKIFDKQSQDFLVLKYANNAKLMVPIISFNLIS 532 Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 RYAG + ++ PLHKLG + W++A++KA E + D+A ELL I A+R+++ GF+F + Y Sbjct: 533 RYAGISLKSTPLHKLGTNQWAKAKKKAGEALFDIAVELLKISAKRSSQTGFSFPKPNDDY 592 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 F +FPFE TPDQ + +N VL+DM MDRLVCGDVGFGKTE+AMRAAFLAV K Sbjct: 593 SSFVANFPFEETPDQIKTMNEVLADMQSQQPMDRLVCGDVGFGKTEIAMRAAFLAVKAGK 652 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 QVA+LVPTTLL+ QHY +F DRF N P +I +SRF++ KEQ I+ ++ +G IDI+IGT Sbjct: 653 QVAILVPTTLLSNQHYRSFIDRFTNDPTKIATLSRFQTPKEQKIIIEQLKQGTIDIIIGT 712 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 HK++Q+++K+K+L L+I+DEEHRFGV+ KE +K +R DILT+TATPIPRTLNMA+ + Sbjct: 713 HKIIQNNIKYKNLSLIIIDEEHRFGVKQKEALKKLRGQSDILTMTATPIPRTLNMALGSL 772 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 R+LSIIATPPA+R ++TFV+E+ + ++EAI REI RGGQV+ L+ND+ +I AE L Sbjct: 773 RELSIIATPPAKRSTIQTFVQEWHNDNIKEAITREIHRGGQVFILHNDINSIDNMAENLK 832 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 +++P+ +I I HG++ RELE++M+DF+H RF++LVCTTIIETGIDIP ANTIII A + Sbjct: 833 QIIPKLQIRIAHGKIPTRELEQIMSDFYHARFHILVCTTIIETGIDIPNANTIIINNAQN 892 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 FGLAQLHQLRGRVGRSHH+AYA+L+ +++ A+ RL+ I SL +LG+GF LA HDL Sbjct: 893 FGLAQLHQLRGRVGRSHHRAYAYLIVKSHLSLSKTAKDRLDVIKSLTELGSGFMLANHDL 952 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS 1010 EIRGAG+LLG+ QSG + IGF+LY +LL+ +DA+ +G++ +L D + + +++ +PS Sbjct: 953 EIRGAGDLLGDNQSGQISEIGFNLYHDLLKRTIDAVYSGKKINLNDPINHEVQIDSGLPS 1012 Query: 1011 LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQA 1070 ++P+ +I DV+ RL YKRIA+ + NEL+ +++E+IDRFGLLPD + LL +L+ + Sbjct: 1013 IIPETYIFDVHERLVLYKRIANCQNNNELKALQIEMIDRFGLLPDSTKNLLYNTKLKLFS 1072 Query: 1071 QKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKT 1130 Q +G+ K+ E +I F +KN ++P + L+QKQ + Y+L +L + + + Sbjct: 1073 QIIGVNKIILYEDKAIITFNKKNTIDPIKITNLIQKQAKKYQLKDQNQLIIKEQMPKNIR 1132 Query: 1131 RIEWVRQFMRELE 1143 RI+ + ++ L Sbjct: 1133 RIKLIEYLLKMLN 1145 >UniRef50_C8P4L0 Transcription-repair coupling factor n=2 Tax=Lactobacillaceae RepID=C8P4L0_9LACO Length = 1185 Score = 1149 bits (2972), Expect = 0.0, Method: Composition-based stats. Identities = 390/1165 (33%), Positives = 624/1165 (53%), Gaps = 41/1165 (3%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 PE + + G ++L+ ++G+A L+A + E+ PV+ + + L D+++ Sbjct: 18 PEFKQLLQQRQPGTRQLVTGISGSARTLLLAGLVEQSQQPVLAVVDSLSQVEELADDLAN 77 Query: 62 FTD-QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 V E L + + + R+ L L + + V++ V L + V Sbjct: 78 LLPPDRVYQFPVEEVLAAEVATSSPNYRLQRVQALDALDSQRPAVVVTSVAGLRRNVFAP 137 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 F L + G L + R QL + GY+ V+ G++A RG+++D++ + ++ P Sbjct: 138 EFFAQATLKVAVGGELDPERARQQLSAMGYQLQKMVLRPGDFAIRGSIIDVYALNTDNPV 197 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE---- 236 R+D FD E+DSLR FD +Q+++ E + +LPA + A ++ + F+ Sbjct: 198 RIDLFDTEVDSLRYFDASTQKSVGNAEEVEILPATDLILPPAEFSRVQAAVKQQFDQLKA 257 Query: 237 ------------VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN 284 V + + + LP + + L + L Y A+ L Sbjct: 258 ELQDGDADILQQVNNRFTPLLTALQERRLPNEMLEFGDLVYPTR-HSLLDYLAADGALYL 316 Query: 285 TG--DLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTE 342 L+ A + + E + L+ SL +E +K QL Sbjct: 317 DDYSRLKDRAGKLADEDQGWLEEKV--KYHQLVSVPSL---SNEFAKLVKADQHAQLFGA 371 Query: 343 HLPTKAANANLG----FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREAL 398 A N P Q L+++ + ++ + RR+ + Sbjct: 372 LFKKGAGNLRFSQLVEITSRPMQRFFGQMPLLKTELQRWTDQ-GQTIIIMADGNERRQQI 430 Query: 399 GELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRR 458 L I D+ L+ + +GF L +I E +L + ++R Sbjct: 431 ARTLTDFGIPVIET-AADQLQVNTVQLVAASLNNGFEMPAAGLVVITEGELF--KQVKKR 487 Query: 459 QDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAK 518 + + + I++ +L G VVH+ HG+G ++G+ T+E G+ +Y+++ Y N+A+ Sbjct: 488 RHRAQKLANAERIKSYTDLKPGDYVVHVNHGIGIFSGIKTMEVDGVHQDYMIINYRNNAQ 547 Query: 519 LYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAK 578 ++VPV+ L+L+ +Y + +++LGG+ W++ +++ A KV D+A EL+D+YA+R A Sbjct: 548 IFVPVTQLNLVQKYVSAESKTPRINRLGGNEWAKTKRRVASKVEDIADELVDLYAKREAA 607 Query: 579 EGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVA 638 +G+AF D F +FP+ T DQ ++I V DM +P MDRL+ GDVG+GKTEVA Sbjct: 608 KGYAFPADDYLQAQFDANFPYTETRDQLRSIKEVKRDMEKPRPMDRLLVGDVGYGKTEVA 667 Query: 639 MRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAE 698 MRA F AV KQVA LVPTT+LAQQH+D RFA +PV+I ++SRF++ +E + A Sbjct: 668 MRAIFKAVTGGKQVAFLVPTTVLAQQHFDTLSKRFAGFPVKIALMSRFKTNQELKETDAG 727 Query: 699 VAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATP 758 +A G IDI++GTH++L DV+F+DLGL+IVDEE RFGV+HKER+K ++ NVD+LTLTATP Sbjct: 728 LAAGSIDIVVGTHRILSKDVQFRDLGLVIVDEEQRFGVKHKERLKELKNNVDVLTLTATP 787 Query: 759 IPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYND 818 IPRTLNM+M G+RDLS++ TPPA R ++T+V E + +R+ I RE+ RGGQVYYL+N Sbjct: 788 IPRTLNMSMLGVRDLSVLETPPAGRFPIQTYVMEQNGGAIRDGITRELNRGGQVYYLHNR 847 Query: 819 VENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 V +I++ +L LVP+ARI HG+M E ELE V+ DF ++VLV T+IIETG+DIP Sbjct: 848 VSDIEETVMKLQALVPDARIGYIHGKMGENELETVLYDFIQGNYDVLVTTSIIETGVDIP 907 Query: 879 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLED 938 NT+ +E ADH GLAQL+Q+RGR+GRS+ AYA+ + K +T +KRL AI + Sbjct: 908 NVNTLFVENADHLGLAQLYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFTE 967 Query: 939 LGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLT 998 LG+GF +A DL IRGAG +LG++Q G ++++G+ LY +L AV + + + Sbjct: 968 LGSGFKIAMRDLAIRGAGNILGKQQHGFIDSVGYDLYSSMLNEAVARKQGKKRAA----- 1022 Query: 999 SQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPAR 1058 EVEL + + LPD ++ D ++ YK I A+T++EL EI+ +L+DRFG P Sbjct: 1023 RADAEVELGVEAYLPDSYVNDQRQKIELYKAIRQAQTDDELLEIQGDLLDRFGDYPAAVG 1082 Query: 1059 TLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAE--KNHVNPAWLIGLLQKQPQHYRLDG- 1115 LL I++L+Q A + I +++ +I F + V +I LL K L Sbjct: 1083 NLLLISKLKQHADEAMIEQIKRQRDSILITFTPAGSHLVKAPQIIKLLAKTKFKATLGEH 1142 Query: 1116 PTRLKFIQDLSERKTRIEWVRQFMR 1140 +L + + T+ +W+ Q + Sbjct: 1143 EGQLTVRLVIQPKMTQTDWLNQLLD 1167 >UniRef50_A5WFY6 Transcription-repair coupling factor n=21 Tax=Proteobacteria RepID=A5WFY6_PSYWF Length = 1271 Score = 1148 bits (2971), Expect = 0.0, Method: Composition-based stats. Identities = 543/1223 (44%), Positives = 747/1223 (61%), Gaps = 89/1223 (7%) Query: 6 RYTLPVKAGEQRLLGELTGAACATLVAEI-----AERHAGPVVLIAPDMQNALRLHDEIS 60 P+ ++R L AA + +A + A V++ D ++ E++ Sbjct: 48 EQLFPIDKAQKRWLYPAYAAAGSLWLASLSDCPVANVANRLKVVVTKDQNQLNQIETELA 107 Query: 61 QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 F DWETL YD SPHQDI+S R++ L + ++G+L++ + TLMQR+ P Sbjct: 108 -FCGVDAYVFPDWETLTYDELSPHQDIVSERINLLTDM--PKQGILLISIQTLMQRMAPP 164 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 S+L G + G + R L +AGYR VD V E GE+A RG+++D+F MG P Sbjct: 165 SWLIGQHFDLSVGDIFDINQQREMLAAAGYRAVDNVFEPGEFAVRGSVIDIFAMGQPFPL 224 Query: 181 RLDFFDDEIDSLRVFDVDSQRTL------------------------------------- 203 RLD FD+EI+++R F+ +QRTL Sbjct: 225 RLDLFDNEIETIRFFNPQTQRTLSTQTLMDLVAGRADANSANQHDLTVESLSLLHKLPDV 284 Query: 204 -EEVEAINLLPAHEFPTDKAAIELFRSQWRDTF-EVKRDPEHIYQQVSKGTLPAGIEYWQ 261 + + +LPA EFP D E FR+ + F V +++ V G +G+EY+Q Sbjct: 285 SKPITQFQILPAKEFPLD-EGKETFRNNFAAMFPNVSSRRFELHKDVMAGIASSGLEYYQ 343 Query: 262 PLFFS----EPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPP 317 PLFF LFSYFP +TL + + + + + R+E R D +P++ P Sbjct: 344 PLFFEIEDWSQNGHLFSYFPKDTLFIIDENTAEAQADYWSQIQRRYEERRHDIDKPIVEP 403 Query: 318 QSLWLRVDELFSELKNWPRVQLKTEHLP----TKAANANLGFQKLPDLAVQAQQKAPLDA 373 L+L + L L +PRV L L T++ L P+L V Q+ PL Sbjct: 404 TLLYLPSNSLNEMLNAYPRVILSQSDLAAADNTQSGKVKLPALMPPELPVSHQKAEPLLE 463 Query: 374 LRKFLETFD----------GPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGR 423 L + P++ E+ GRRE L EL K+ Q L + Sbjct: 464 LLNYASAGWDDNTTEAALARPILVVAETAGRREILLELFRG-KLNVQTFDSLQQFLGSEL 522 Query: 424 Y-------------------LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRT 464 Y L I E G V ++L++I E+ L G +V + R+ + Sbjct: 523 YQQSLIKNTASASNTKPTVGLTIAPIERGAVI-DQHLSIISETQLFGRQVLQTRRRRQSD 581 Query: 465 INPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVS 524 ++ + L++++ EL G PVVH++ G+GRY G+ TL+ G E++ L YA+DA +YVPV+ Sbjct: 582 VSEEFLVKSVTELTEGSPVVHIDQGIGRYHGLITLDIGEGEQEFIHLKYADDASIYVPVA 641 Query: 525 SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 +L LISRY+GG APLHK+G W +A+QKA E++ DVAAELL++ A+R AKEG FK Sbjct: 642 NLQLISRYSGGDPALAPLHKIGSGKWDKAKQKALEQIHDVAAELLNMQARRQAKEGIHFK 701 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 + QY+LF F FE TPDQA AI+AV+ DM Q MDRL+CGDVGFGKTEVAMRAAF+ Sbjct: 702 VETAQYELFASQFAFEETPDQANAIDAVMHDMKQNKPMDRLICGDVGFGKTEVAMRAAFI 761 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 AV++ QVAVLVPTTLLA QH DNF+DRFA+WP+R+E +SRF K Q Q+L ++A GK+ Sbjct: 762 AVNSGYQVAVLVPTTLLAGQHEDNFKDRFADWPIRVETLSRFGGKKYQDQVLEDLAAGKV 821 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 DI+IGTHKLLQ DVKF +LGL+IVDEEHRFGVRHKERIKA++++VD L++TATPIPRTLN Sbjct: 822 DIVIGTHKLLQKDVKFANLGLMIVDEEHRFGVRHKERIKAIQSDVDSLSMTATPIPRTLN 881 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 MA++GMRD+SIIATPPARRL++KTFV + + +++EAILRE+LRGGQVY L+NDV +I++ Sbjct: 882 MALTGMRDMSIIATPPARRLSIKTFVMQKTNQLMKEAILRELLRGGQVYLLHNDVASIER 941 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 AE + ELVPEAR+ + HGQM ER LE+VM F+H++FNVLVCTTIIETGID+P ANTII Sbjct: 942 MAENIRELVPEARVGVAHGQMNERGLEQVMQQFYHKKFNVLVCTTIIETGIDVPNANTII 1001 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 IERAD FGLAQLHQLRGRVGRSHHQAY +LL P K + DA+KRL AI LGAGF Sbjct: 1002 IERADKFGLAQLHQLRGRVGRSHHQAYCYLLVPSVKGLKGDAKKRLTAIERANTLGAGFM 1061 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 LA+ DLEIRGAGE+LG++QSG+M+ IGFSLYM++LE A A+KAG+EP L S +++ Sbjct: 1062 LASEDLEIRGAGEILGKQQSGNMQAIGFSLYMDMLERATKAIKAGKEPDLNTPLSLTSDI 1121 Query: 1005 ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA 1064 L +L+P+D++ DV RL FYKRI++A+ + L +I+ E+IDRFG LPD + L I Sbjct: 1122 NLHSSALIPEDYVNDVPQRLLFYKRISNAEDKEVLTDIRTEMIDRFGALPDQTKQLFAIH 1181 Query: 1065 RLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQ- 1123 +LR A+ L I K++ ++EFA V +I L+Q YR++G + +++ Sbjct: 1182 QLRVLAEPLAIYKIDATSNSVILEFAPDTPVEALAIIQLIQSDGNRYRMNGASGIRYTNP 1241 Query: 1124 -DLSERKTRIEWVRQFMRELEEN 1145 L R+E VR+ + + Sbjct: 1242 DKLDTPAKRVEVVRELLNHFTRH 1264 >UniRef50_B7J4B9 Transcription-repair coupling factor n=3 Tax=Acidithiobacillus RepID=B7J4B9_ACIF2 Length = 1149 Score = 1148 bits (2971), Expect = 0.0, Method: Composition-based stats. Identities = 548/1155 (47%), Positives = 747/1155 (64%), Gaps = 21/1155 (1%) Query: 1 MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60 M P +AG R ++ GAA + L A++ + P++++ P+ ++ E Sbjct: 1 MDRSLSLGTPPRAGAARAFSQIYGAADSWLAAQMTRQWQRPLLILLPNARDVEEWQREWR 60 Query: 61 QFTDQ--MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVC 118 F + D E LPYD +P D ++RL+TL LP + GV + P++ ++QR+ Sbjct: 61 FFAPDLPAPLVFPDREILPYDRLAPPADATATRLATLATLPEWR-GVCLAPLSAVLQRLP 119 Query: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL 178 P SFL HA V+ G LS + R +L AGYR+V +V E GE A RG ++DLFP GS L Sbjct: 120 PRSFLDQHAFVLAVGDHLSPEGFRQRLIDAGYRNVSEVSEAGELAWRGGIIDLFPSGSPL 179 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK 238 PYR++ FD ++S+R FD ++QRTL++VE ++LLPA E P D AA++ FRS++R F Sbjct: 180 PYRIELFDRVVESIRAFDPETQRTLQKVEGVSLLPAREVPVDTAALQEFRSRFRARFSGD 239 Query: 239 RDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQAD 298 IY+ S+G P G E++ PLFF E L +FP + ++ LE SA + D Sbjct: 240 PQRAEIYRAASRGQAPQGAEHYLPLFFPE-CSHLLMHFPVDGVVFLPPGLEASARHIRQD 298 Query: 299 TLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKL 358 R+E R D + P+LPP L L E L+ RV + E + Sbjct: 299 WQERYEERSHDTVHPILPPDELLLPPSEWEDVLRGRARVYGQQEGDAER-------LPTA 351 Query: 359 PDLAVQAQQKAPLDALRKFLETF--DGPVVFSVESEGRREALGELLARIKIAPQRIMRLD 416 P + +APL +L FL G V+ + ES GR+EAL E L + + P R+ Sbjct: 352 PLPDLHGSPEAPLASLDTFLRHLPTTGRVILAAESPGRQEALSERLGKSGLLPSRVHDWP 411 Query: 417 EASDRG--RYLMIGAAEHGFVDTVRNLA---LICESDLLGERV-ARRRQDSRRTINPDTL 470 E + + E G + L L+ E+ + G+RV A+RR + R + + L Sbjct: 412 EFLAGTERIAITVAPLERGLLIKENGLVRLALVSEAQIFGDRVFAQRRSANARQRSIEGL 471 Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTT-LEAGGITGEYLMLTYANDAKLYVPVSSLHLI 529 +R+L EL G V H E+G+GR+ GM T + G EY++L YAN +YVP L I Sbjct: 472 VRDLGELQPGDAVTHEEYGIGRFQGMATPFASQGDINEYVVLEYANGDLVYVPADHLDRI 531 Query: 530 SRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQ 589 +RY G L +LG + W + + KA +K D A+ELLDIYA+RAA+ G AF + Sbjct: 532 ARYVGNGATEPVLSRLGSNHWEKVKAKARQKAVDAASELLDIYARRAARTGRAFPEPDDA 591 Query: 590 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH 649 Y F FPFE TPDQ QAI+AV++DM P MDRLVCGDVGFGKTEVA+RAAFLA + Sbjct: 592 YWEFVSRFPFEETPDQQQAIDAVIADMTSPHPMDRLVCGDVGFGKTEVALRAAFLAAHSG 651 Query: 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIG 709 QVAVLVPTTLLAQQHY+NFR+R A P+R+E++SRF++AK Q+L V+ G++DILIG Sbjct: 652 AQVAVLVPTTLLAQQHYENFRNRCAGLPLRVEVLSRFQNAKTHKQVLTAVSVGEVDILIG 711 Query: 710 THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSG 769 TH+LLQ DV F DLGLLI+DEEHRFGVR KERIKA+RA VDILTLTATPIPRTLN++++G Sbjct: 712 THRLLQKDVAFHDLGLLILDEEHRFGVRQKERIKALRAEVDILTLTATPIPRTLNLSLAG 771 Query: 770 MRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 +RDLSIIATPP RR V+TFV+ +D V EA RE+ RGGQVY+L+N+V +I++ A L Sbjct: 772 LRDLSIIATPPQRRQPVRTFVQIWDDATVIEACQRELHRGGQVYFLHNEVRDIERMAATL 831 Query: 830 AELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 L+PEAR+ + HGQM E ELE VM DF+HQRF++L+CTTIIE+GID P ANTI+I RAD Sbjct: 832 RRLLPEARLRVAHGQMPEGELEAVMLDFYHQRFDILLCTTIIESGIDNPHANTILINRAD 891 Query: 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHD 949 FGLAQLHQLRGRVGRSH +AYA+L TP +AM+ DA++RL+AI SLEDLG GFALA+HD Sbjct: 892 KFGLAQLHQLRGRVGRSHQRAYAYLFTPDLRAMSDDARRRLDAIQSLEDLGVGFALASHD 951 Query: 950 LEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP-SLEDLTSQQTEVELRM 1008 LEIRGAGELLGEEQSG M+ +GF+L+ME L++AV+A++AGR+P SLE+ + E+ L Sbjct: 952 LEIRGAGELLGEEQSGHMDEVGFTLFMEWLDDAVEAIRAGRDPRSLEEQRTSGPEIHLNT 1011 Query: 1009 PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQ 1068 P+L+PDD++PDV+ RL YKR++ +++ + EI VE+IDRFG +P PARTLL RLR Sbjct: 1012 PALIPDDYLPDVHLRLQLYKRLSDVRSDTAIGEIMVEMIDRFGPIPAPARTLLCQTRLRL 1071 Query: 1069 QAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSER 1128 A + GI +++ G ++FA +N V P +I L+Q+ Y+LDG RL+ +DL + Sbjct: 1072 VAIQTGIEQIDAGPAGARLQFAAENQVAPDKIIRLIQQPHSIYQLDGEHRLRIRRDLPDG 1131 Query: 1129 KTRIEWVRQFMRELE 1143 + R + + Q + +L Sbjct: 1132 EARCQELLQLIDQLR 1146 >UniRef50_B1I198 Transcription-repair coupling factor n=2 Tax=Peptococcaceae RepID=B1I198_DESAP Length = 1176 Score = 1148 bits (2969), Expect = 0.0, Method: Composition-based stats. Identities = 433/1177 (36%), Positives = 632/1177 (53%), Gaps = 44/1177 (3%) Query: 1 MPEQYRYTLPVKAG-------EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNAL 53 + E R T +K +++ + + G A + A +A R P+++I P + A Sbjct: 4 LTEFLRETPALKTAVSGLARYKRQHVLGVGGGHQALVCAALA-RDPAPLLIITPGEREAA 62 Query: 54 RLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNT 112 L D++ + + WE LP + ++I R+ L L T V+I PV+ Sbjct: 63 ALADDLVTLLPGRGIFVFSAWELLPVQVLAYSREIGVRRMRVLEALITGTNPVVIAPVDA 122 Query: 113 LMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLF 172 L + + P L V++ GQ + ALR +L S GY V QV G+++ RG + DLF Sbjct: 123 LARLLPPSGVLRERIFVLEGGQSWTMGALRGRLLSMGYEAVSQVDTAGQFSIRGGIADLF 182 Query: 173 PMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAA----IELFR 228 P + P R++FF DEI SLR FD ++QR+ + + + PA E + A IE Sbjct: 183 PYTARYPIRVEFFGDEIASLRTFDPETQRSRAATDRVTVAPATELVVEDDAWEAGIETLT 242 Query: 229 SQWRDTFE-------------VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSY 275 ++R+ + ++ E I + + GIE F+ + L Y Sbjct: 243 REYREQLDRLEKQGDTEGARRLREWVEEILPHLDARSHTPGIEDLLAYFYPQA-ATLMDY 301 Query: 276 F-PANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW 334 PA + V D A A ++ R L L+L ++LF+ L + Sbjct: 302 LGPAGVVAVTEPDRVAEVAESFAQHRAHGYAVLLEQGRLLPGQFRLYLDREQLFAALAPF 361 Query: 335 PRVQLKTEHL--PTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESE 392 V L ++ + F+ + A L +R+ VV V + Sbjct: 362 RTVYLSLFGRVGAFSRSDREIRFEVRELPGNLGRTGAVLGEIRRRQVA-GQRVVLLVGTG 420 Query: 393 GRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGE 452 R L L + +A + L + + +G GF LA++ E ++ G+ Sbjct: 421 ERARRLLNSLRQSGLAAFQAYELGQVQPGQVAVGVGRLNKGFEIAESQLAVLTEREIYGK 480 Query: 453 RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLT 512 ++ QD R + L G VVH+ HG+GRY G+ LE G + EYL++ Sbjct: 481 QL----QDRREPYRLRRRTLDELNLAPGDFVVHVNHGIGRYHGIVLLEIGEVKREYLLIN 536 Query: 513 YANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIY 572 Y + KLYVP L L+ +Y G E +LGG W+R++++ E VR++A ELL +Y Sbjct: 537 YLGEDKLYVPTDQLGLVQKYIGAEGETPRCSRLGGSEWARSKKRVREAVREMAQELLKLY 596 Query: 573 AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632 A R + G+ F D + F +FPFE TPDQ +AI V DM +P MDRL+CGDVG+ Sbjct: 597 AARQSLPGYRFPADNPWQREFELAFPFEETPDQLKAIMQVKKDMERPRPMDRLLCGDVGY 656 Query: 633 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ 692 GKTEVAMRA F AV + KQ AVLVPTT+LAQQH FR+RF +PV IEM+SRFRS +EQ Sbjct: 657 GKTEVAMRAVFKAVTDGKQAAVLVPTTVLAQQHLQTFRERFNGYPVVIEMLSRFRSVREQ 716 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 Q+LA++A GK+DI+IGTH+L+Q DV+F DLGL++VDEE RFGV HKE++K NVD++ Sbjct: 717 KQVLADLAAGKVDIVIGTHRLVQDDVQFADLGLIVVDEEQRFGVLHKEKLKLRHPNVDVI 776 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 TLTATPIPRTL M++ G+RD S++ TPP R V+TFV E D +++REA+ RE+ RGGQV Sbjct: 777 TLTATPIPRTLYMSLVGIRDTSLLETPPLDRFPVQTFVVEEDPVLIREAVGRELARGGQV 836 Query: 813 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 Y+++N V + + A L ELVPEARIA+ HGQMRE +LE+VM DF ++VLVCTTIIE Sbjct: 837 YFVHNRVFELDRVAGWLQELVPEARIAVAHGQMREDQLEQVMLDFVAGAYDVLVCTTIIE 896 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 TG+DI NT++++ AD GLAQL+QLRGRVGRS+ AYA+ + + A+KRL A Sbjct: 897 TGLDITNVNTLVVKEADQLGLAQLYQLRGRVGRSNRLAYAYFTFRRDRLLGEAAEKRLRA 956 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP 992 I D G+GF LA DLEIRGAG LLG EQ G++ +GF +Y LLE +V LK Sbjct: 957 IRDFTDFGSGFRLAKRDLEIRGAGNLLGTEQHGNISVVGFEMYCRLLEESVRELKGE--- 1013 Query: 993 SLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGL 1052 +T VE+ + + LPDD+IPD ++ FY +A + +++ + EL DRFG Sbjct: 1014 --APPEEFETVVEVPVTAFLPDDYIPDPEQKVQFYHLLARVQQVEDVDHVAEELRDRFGS 1071 Query: 1053 LPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYR 1112 P P LL IAR+R A+ I+ + G + E + ++ + L+ + + P R Sbjct: 1072 PPAPVENLLAIARIRAMAKGFRIKSINGQGRSCRFILGEAHPLDGSTLVAVSEHYPGRLR 1131 Query: 1113 LD-GPTRLKFIQDLSERKT---RIEWVRQFMRELEEN 1145 + + L I + F+ ++ + Sbjct: 1132 FKEEESGFEIWLKLESPGDGPRVIREIESFLAKISQK 1168 >UniRef50_Q3AFL2 Transcription-repair coupling factor n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AFL2_CARHZ Length = 1160 Score = 1147 bits (2967), Expect = 0.0, Method: Composition-based stats. Identities = 389/1160 (33%), Positives = 603/1160 (51%), Gaps = 38/1160 (3%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 E R + +L+ G A L+A +A+ P+++I + Q A + +++ F Sbjct: 14 EFKRLLEGINKKRIQLIYGSYGTARTFLMATVAKALNRPLLVITENEQVAREIAEDLEFF 73 Query: 63 TDQMVMNLADWETLPYD-SFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 E +D + ++ +SR+ L +L ++ +V L ++ P Sbjct: 74 LGDKTSRFFYREGFLFDLTVREGGELKASRIELLKRLSRGEKPHTVVNYEALTRKYPPLQ 133 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 ++ G + + L L GY VDQV G+++ RG ++D++ G E+P+R Sbjct: 134 SFARWKRELRVGDVVELEELIRYLSQIGYERVDQVEAPGQFSQRGGIVDVYVPG-EVPFR 192 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE----- 236 +FF DEIDSLR DV+SQR+ + + + PA ++ + + + E Sbjct: 193 AEFFGDEIDSLRALDVESQRSQANLNEVVIYPAEVAVAEEDLLLEVKQKISADIEQQVKK 252 Query: 237 ---------VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NT 285 R E + ++ IE P F+S L YF L+ Sbjct: 253 LIQQNKREAAGRLKEKGAEVLNILGKSEVIEKLLPYFWSG--VSLLDYFGDEYLVFLDEP 310 Query: 286 GDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHL- 344 G + F + L ++ ++L + L+ V Sbjct: 311 GRFGEQINSLEKLRRESF-TEALSGGYTLPKQAEVFYEEEQLMALLRGRIAVITSLLPKT 369 Query: 345 -PTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLA 403 F ++K + ++ FL + + E AL L Sbjct: 370 PRFIGDYDPHNFAGRKPPNYLGKEKLFFEDIKNFLAN-NYRIFILRGREEAAVALKNELL 428 Query: 404 RIKIAPQRIMRLD-EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR 462 + + + + E + R + +G GF + L + + +L G V R + Sbjct: 429 KRNFPASFVEKFEVEIAPREIKIGLGVLNSGFEFPQQKLLVYTDVELAGRAVKARVTKAV 488 Query: 463 RTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVP 522 + G VVH HG+G+Y G+ +E GG +YL++ Y + +LYVP Sbjct: 489 LGERAEEPFS------PGDYVVHPVHGIGKYLGIKPVEVGGNVKDYLVIAYQGEDRLYVP 542 Query: 523 VSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582 + + +Y G E L +LGG W R + + VR++A LL++YA+R AK GFA Sbjct: 543 PEQVGNLQKYVGVDGEPPKLSRLGGSDWQRVKNRVKAAVREMAEGLLELYAKRMAKPGFA 602 Query: 583 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 642 F D + F + FP+E TPDQ +AI V DM +P MDRL+CGDVG+GKTEVA+RAA Sbjct: 603 FSPDTVWQKEFEERFPYEETPDQLKAIEEVKRDMEKPKVMDRLLCGDVGYGKTEVALRAA 662 Query: 643 FLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 702 F AV + KQVAVL PTTLLAQQHY+ F++RF+ +PV I ++SRF++A+EQ +I+ E+ G Sbjct: 663 FKAVMDGKQVAVLTPTTLLAQQHYNTFKERFSGYPVEIRLLSRFQTAREQKEIIKELKRG 722 Query: 703 KIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRT 762 K+DI+IGTH+LLQ DV+F DLGL+IVDEE RFGV KER+K + VD+LTLTATPIPRT Sbjct: 723 KVDIVIGTHRLLQDDVQFYDLGLMIVDEEQRFGVAQKERLKILTETVDVLTLTATPIPRT 782 Query: 763 LNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENI 822 L+MA+ G+RDLS++ TPP R V+T+V E D ++R+AI RE+ RGGQV++++N V +I Sbjct: 783 LHMALMGIRDLSVLNTPPENRFPVQTYVLEEDPFIIRDAIRRELGRGGQVFFVHNRVSDI 842 Query: 823 QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 + A + LVPEA++A+ HGQM+E +LERVM +F +++VLV TTIIETGID+P NT Sbjct: 843 DEVAAWVQSLVPEAKVAVAHGQMKEEQLERVMLEFISGKYDVLVSTTIIETGIDLPNVNT 902 Query: 883 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAG 942 +II+ AD FGLAQL+QLRGRVGRS+ AYA+L+ K + A+KRL AI + G+G Sbjct: 903 LIIKNADRFGLAQLYQLRGRVGRSNRIAYAYLMYEKDKVLREAAEKRLAAIKEFTEFGSG 962 Query: 943 FALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQT 1002 LA DLEIRGAG LLG EQ G + +GF +YM+LL+ V LK + Sbjct: 963 LKLAMRDLEIRGAGNLLGPEQHGHIAAVGFDMYMKLLQETVAELKG-----QVTSEEVEP 1017 Query: 1003 EVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLD 1062 ++EL + + +P+ +IPD ++ Y+R++ + +LE++ ELIDRFG +P L+ Sbjct: 1018 QLELNLTAYIPESYIPDEKQKIEMYRRLSRTRNLEDLEDVVDELIDRFGEIPPEVENLIR 1077 Query: 1063 IARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFI 1122 + +++ A KL ++ + ++ I+F + L + + L+ Sbjct: 1078 LIKIKIVASKLKVKGIFQTDEELKIQFFPNPEITAEKLSRISGQFKGRVIFGMNPDLEIR 1137 Query: 1123 QDLSERKTRIEWVRQFMREL 1142 + + + + + Sbjct: 1138 VRTKGKMG--QEIFSILERI 1155 >UniRef50_A0Q6R1 Transcription-repair coupling factor n=19 Tax=Francisella RepID=A0Q6R1_FRATN Length = 1141 Score = 1146 bits (2964), Expect = 0.0, Method: Composition-based stats. Identities = 481/1141 (42%), Positives = 724/1141 (63%), Gaps = 15/1141 (1%) Query: 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM----VM 68 + ++ G+A + L E +++ +++ D Q A +++ E+ ++ Sbjct: 7 SANDTVVSNAYGSAFSILFNEYLKQNNQFNLIVTEDSQQAHKIYKELKYLNKNNSKVDIL 66 Query: 69 NLADWETLPYDSFSPHQDIISSRLSTLYQLPTM-QRGVLIVPVNTLMQRVCPHSFLHGHA 127 + E LPYD FS DIIS R LY++ Q ++I ++ ++++ P SF+ H+ Sbjct: 67 FFPNLEILPYDRFSASIDIISRRQEILYKMTHQPQNTLIITSISNTLRKIAPASFIQEHS 126 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 ++K G L + L AGY V+ V E GE++ RG+++D++P+GS++ +R+D FD+ Sbjct: 127 FILKTGDNLDITKYKMLLTEAGYTLVNNVFEKGEFSIRGSIIDIYPIGSKVAFRIDLFDN 186 Query: 188 EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 247 EIDS++ + +SQR+ ++++IN++P+HE + + K I Sbjct: 187 EIDSIKELNTESQRSGNQIQSINIMPSHELVYNNQNTTFALDKLNKLCGDKALNSTIATY 246 Query: 248 VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRG 307 + +GIE++ PLF+ + L L+ Y P +T + ++ S E F + R+ Sbjct: 247 IQNNEYFSGIEFYLPLFY-DKLSSLYDYLPPSTNIHLVDNITNSIEAFSDEVKFRYNELK 305 Query: 308 VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQ 367 D RP+LP Q ++ E+ + + ++ + K+ + L L ++ + Sbjct: 306 HDSDRPILPFQEIFYSQQEIQDIYQQYKNIKWFQQP---KSKSKILKVDHLEKISANYKL 362 Query: 368 KAPLDALRKFLETFDG-PVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR--GRY 424 P L++F++ + V+FS +S GR E L E L ++ + Q +EA + Sbjct: 363 ANPFKDLQQFIDKSNFDKVIFSTDSNGRAELLLEHLNKLNLNIQSCKNFNEAIEASTKFC 422 Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 L+I + G + + +ALI E+DL E + S+ +P +++L +L G VV Sbjct: 423 LIISPFQEGMII-DKKIALITEADLFPEHSYNSTKVSQHDHHPTVDLKDLTDLKPGMHVV 481 Query: 485 HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544 H++HG+GRY G+ ++E G E+++L YANDAK+YVP++SL+LIS Y E L+K Sbjct: 482 HIDHGIGRYEGLESIELNGKKDEFILLRYANDAKIYVPITSLNLISIYNSSLTEKIALNK 541 Query: 545 LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604 LG D W + ++K +K+ DVAA LL+IYA+R ++GF+ D E+Y FC FP+E TPD Sbjct: 542 LGTDKWKKQKEKTIKKIIDVAANLLEIYAKREMRQGFSNSLDEEEYLRFCADFPYEETPD 601 Query: 605 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 664 Q AIN V DM MDRL+CGDVGFGKTE+AMRAAFLA N KQVA+LVPTT+LAQQ Sbjct: 602 QLSAINDVFKDMISAKPMDRLICGDVGFGKTEIAMRAAFLATQNQKQVAILVPTTILAQQ 661 Query: 665 HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 724 HY++F+DRF N V IE+I+R ++ K Q Q+ ++ +G +DI+IGTHKL+ S + FK+LG Sbjct: 662 HYNSFKDRFTNTAVNIEVITRSKTPKAQQQLFEDLKKGTVDIIIGTHKLISSKIDFKNLG 721 Query: 725 LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784 LLI+DEEHRFGV KE++K+++A +DILT++ATPIPR+L+MA S +RDLSIIA+PPA+RL Sbjct: 722 LLIIDEEHRFGVAQKEKLKSLKAEIDILTMSATPIPRSLSMAFSALRDLSIIASPPAKRL 781 Query: 785 AVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 844 +VKTFV+EYD+ ++REA+ RE +RGGQ++YLYN VE IQK E L EL P RIAI HGQ Sbjct: 782 SVKTFVKEYDNNIIREAVSRETIRGGQIFYLYNKVETIQKKKEILQELFPRLRIAIAHGQ 841 Query: 845 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 M E+E+++VM DF H ++++L+CTTIIETGIDIP ANT+IIE A++ GLAQLHQLRGRVG Sbjct: 842 MSEKEIQKVMFDFKHNKYHILLCTTIIETGIDIPNANTLIIEDANNLGLAQLHQLRGRVG 901 Query: 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 964 RSHHQAYA++L P+ ++T DA KRLEAI++ E LG GF LA HDLEIRGAGE+LGEEQS Sbjct: 902 RSHHQAYAYMLIPNEASITKDALKRLEAISNTESLGGGFTLANHDLEIRGAGEILGEEQS 961 Query: 965 GSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQ-TEVELRMPSLLPDDFIPDVNTR 1023 G+++ IG +LYM+LL+ + L+AG+E ++E++ + EVEL +P+L+PD +I DVNTR Sbjct: 962 GNIDGIGLNLYMDLLDKTIANLRAGKELNIEEVINSTVCEVELNIPTLIPDYYIYDVNTR 1021 Query: 1024 LSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 L+ YKRI+ A + +L IK+ELIDRFG LP LL +A ++ A LGI +++ Sbjct: 1022 LNIYKRISKA-SHQDLVNIKIELIDRFGKLPLEVLYLLKVAHIKIDAIALGISQIKMFAT 1080 Query: 1084 GGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELE 1143 G I F+ LI L+Q Q +RL L + + RIE++ F++++ Sbjct: 1081 SGKISFSNNTKFELQKLIKLIQSQHSDFRLTKEHDLIITKVTKTAEQRIEFIENFLKKIV 1140 Query: 1144 E 1144 + Sbjct: 1141 Q 1141 >UniRef50_C7TMD0 Transcription-repair coupling factor n=18 Tax=Lactobacillus RepID=C7TMD0_LACRL Length = 1175 Score = 1145 bits (2962), Expect = 0.0, Method: Composition-based stats. Identities = 384/1159 (33%), Positives = 616/1159 (53%), Gaps = 37/1159 (3%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 PE ++ G L+ L+G+A + ++ ++++ + +A L ++S Sbjct: 11 PELSALWPKLETGRH-LVTGLSGSAKTVFFGALLQQQKKQLLIVENNRFHADELAADLSS 69 Query: 62 FTDQM-VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 V + + L + + + R++ L + + Q G+++ + + + Sbjct: 70 LLGDALVYDFPVEDVLAAEVAVSSPETRNDRINALTFIQSGQPGIIVTSLAGYKRILPAP 129 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 + LV+ L + QL + GYR V G++A RG ++D++P+ + P Sbjct: 130 AAWAASELVVDMDSELDPQTVAKQLVAMGYRRDSLVSAPGQFAIRGGIIDIYPLNQDDPI 189 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R++ FD EIDS+R FD+ +QR+L++++ I + PA + + ++ + Sbjct: 190 RIELFDTEIDSIRSFDIATQRSLKKLDQIVIAPATDMIASDQVLTDAGARIGKQATAYKA 249 Query: 241 PEHIY--------------QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG 286 QQ+ P + + P + E + Y + L+ Sbjct: 250 KVKDAAAKQAITDGLLTTSQQLQALERPENLALYAPELYPE-HHRITDYLAGDALVAFDD 308 Query: 287 --DLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHL 344 L S DT + + P + ++ PR+ L Sbjct: 309 YSRLLDSDTNLVQDTAEWYSQLQEEGRLLPKTPNPTI----QALNQRDRHPRLYLSLFQK 364 Query: 345 PTKAANANL--GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELL 402 + +Q ++++ VVF V + R + L L Sbjct: 365 GMGQLRLDSLTNVPSRNVQQFFSQMPLLKTETDRWVKQ-KQTVVFLVSDKNRLDKLSATL 423 Query: 403 ARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR 462 +I + ++ L G+ ++GF L ++ E +L +RR+ Sbjct: 424 HDFEI-SNVVTEPNQLLSGKVQLTDGSLKNGFELPDLKLVVVTEHELFN--ARQRRRARH 480 Query: 463 RTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVP 522 +T+ +R+ EL G VVH+ HG+G+Y GM TLE G+ +Y+ + Y N+ KL++P Sbjct: 481 QTLANTERLRSYNELKPGDYVVHVNHGIGQYTGMETLEVDGVHRDYITIVYRNNDKLFIP 540 Query: 523 VSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582 V L+L+ +Y + ++KLGG W + ++K A ++ D+A EL+D+YA+R A++G+A Sbjct: 541 VDQLNLVQKYVSADGKTPNVNKLGGTEWQKTKRKVAARIEDIADELIDLYAKREAEKGYA 600 Query: 583 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 642 F D + Q F D FP+ TPDQ ++ + DM +P MDRL+ GDVGFGKTEVA+RAA Sbjct: 601 FGPDDDLQQKFEDEFPYPETPDQLRSAKEIKRDMEKPKPMDRLLVGDVGFGKTEVALRAA 660 Query: 643 FLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 702 F AVD KQVA+LVPTT+LAQQH+D +DRFA++PV+I ++SRF++ + + + G Sbjct: 661 FKAVDYGKQVAILVPTTILAQQHFDTMKDRFADFPVKIGLLSRFQTPHQNKMTIKGLKNG 720 Query: 703 KIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRT 762 IDI++GTH+LL DV F+DLGLL++DEE RFGV+HKERIK +++NVD+LTLTATPIPRT Sbjct: 721 TIDIVVGTHRLLSKDVAFRDLGLLVIDEEQRFGVKHKERIKQLKSNVDVLTLTATPIPRT 780 Query: 763 LNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENI 822 LNM+M G+RDLS+I TPP R ++TFV E + V+REAI RE+ RGGQV+YL+N VE++ Sbjct: 781 LNMSMLGVRDLSVIETPPTNRYPIQTFVMEQNPGVIREAIEREMERGGQVFYLHNRVEDM 840 Query: 823 QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 ++ +L ELVP+A I HGQM E +LE V+ DF H ++VLV TTIIETG+D+P ANT Sbjct: 841 ERTVSQLEELVPDASIGYAHGQMTETQLENVIYDFLHGAYDVLVTTTIIETGVDMPNANT 900 Query: 883 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAG 942 +IIE ADH+GL+QL+QLRGR+GRS AYA+ + K + A+KRL+AI +LG+G Sbjct: 901 LIIENADHYGLSQLYQLRGRIGRSSRVAYAYFMYQPMKVLNEVAEKRLQAIKDFTELGSG 960 Query: 943 FALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQT 1002 F +A DL IRGAG LLG++Q G ++++G+ LY ++L+ AV+ + + + Sbjct: 961 FKIAMRDLSIRGAGNLLGKQQHGFIDSVGYDLYTQMLQEAVNKRRGLK-----TVQKTDA 1015 Query: 1003 EVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLD 1062 E++L + + LP D++ D ++ YKRI A ++ EI +LIDRFG P P LL Sbjct: 1016 EIDLGLEAYLPTDYVADSRQKIELYKRIREADSDEAETEISEDLIDRFGDYPQPVTNLLA 1075 Query: 1063 IARLRQQAQKLGIRKLEGNEKGGVIEFAEK--NHVNPAWLIGLLQKQPQHYRLD-GPTRL 1119 IA L++ A + ++ N++ + + + L ++ +L Sbjct: 1076 IAHLKRFADLAWVDHVQKNDQKMTVVLTPQATAKAQGEPIFKALAATTLKAQVAIADGKL 1135 Query: 1120 KFIQDLSERKTRIEWVRQF 1138 + EW+ Q Sbjct: 1136 TVTLAVPATMKEDEWLGQL 1154 >UniRef50_B8FZB7 Transcription-repair coupling factor n=2 Tax=Desulfitobacterium hafniense RepID=B8FZB7_DESHD Length = 1197 Score = 1141 bits (2952), Expect = 0.0, Method: Composition-based stats. Identities = 395/1150 (34%), Positives = 628/1150 (54%), Gaps = 36/1150 (3%) Query: 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMNLADWE 74 +++ LTG+ A++ ++ P ++I + A + +++ + + V+ E Sbjct: 46 PQMIYNLTGSQKPAFAAQLIQK-GKPGLIITYSEELAQKWVNDLRSWLPGEDVLYFPSSE 104 Query: 75 TLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 LP++ ++ R+ L +L + ++VP + QR + L +K+G Sbjct: 105 WLPFEVLGKSRETTIERIRVLNRLAQDNQCTVVVPALAVNQRSFSRRRWQEYILELKEGT 164 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 194 L +L +AGY +D V G++A RG ++D+ P+ E P R++FFDDE+DS+RV Sbjct: 165 SYDLKDLAQKLSTAGYERLDVVDGKGQFAIRGGIMDIAPLDGE-PLRVEFFDDEVDSIRV 223 Query: 195 FDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF-----------------EV 237 FD+++Q++ E ++++ + PA E +E + R +V Sbjct: 224 FDLETQKSTETLKSVKIPPALEVVIRPEELEKLGWEVRAQARKQAGRLNRSGRSDVAEQV 283 Query: 238 KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAE-RFQ 296 + + I +++ G + I + L EPL P FS + ++ L + FQ Sbjct: 284 MKQAQRIEERLKTGRVDESIYPYLSLL-EEPLEPFFSLLSQDHYVILDEPLRLKEQLEFQ 342 Query: 297 ADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEH--LPTKAANANLG 354 + + P+ ++ ++ + P V + T +P A Sbjct: 343 QKERLEEYTQALAKGEEFYSPEDQFVSYEQFLRYGEKHPFVLISTLPREIPGVAPKRIFN 402 Query: 355 FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMR 414 P + +D + + ++ V V E E + + L ++ Sbjct: 403 LNARPLTGFMGKTGILVDEIEHWQKS-GHIVNLFVGDEEHAERMLQGLRDRGALAKKHEL 461 Query: 415 LDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNL 474 + + G Y+ + + GF + L ++ E+++ + + ++ Sbjct: 462 HEPVQEGGVYVYSSSLDQGFELPLSKLIVLSEAEIYKRERKAAVKRKKAPEKTGQRLQ-F 520 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG 534 A+L G VVH+ HG+G++ G+ + GG+ +Y + YA KLYVP+ L+ + +Y G Sbjct: 521 ADLKPGDFVVHVHHGIGQFMGIERIAVGGVEKDYFSVKYAGQDKLYVPLDQLNFLQKYLG 580 Query: 535 GAEEN-APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 E L+KLGG W + + KA ++++A +L+ +YAQR A +G+AF D Q F Sbjct: 581 SDAETLPKLYKLGGSEWKKVKAKAKSAIKEMAFDLVKLYAQREATKGYAFSPDNVWQQEF 640 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 + FP++ TPDQ Q I V DM + MDRL+CGDVG+GKTEVA+RAAF AV + KQVA Sbjct: 641 EEKFPYQETPDQMQCIVEVKQDMMRQRPMDRLLCGDVGYGKTEVALRAAFKAVMDSKQVA 700 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 VLVPTT+LAQQH++ F++RF +PV I+M+SRFRSAKEQ IL + EG IDI++GTHKL Sbjct: 701 VLVPTTILAQQHFNTFQERFMGYPVSIQMLSRFRSAKEQKLILQGLKEGSIDIVVGTHKL 760 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 + +KFKDLGLLIVDEE RFGV HKE++K ++ANVD+LTL+ATPIPRTL+M++ G+RDL Sbjct: 761 VSDSIKFKDLGLLIVDEEQRFGVAHKEKLKTLKANVDVLTLSATPIPRTLHMSLVGVRDL 820 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 SII TPP R V+T+V E+ VVREAI REI RGGQV++++N VE++++ L++LV Sbjct: 821 SIIETPPEDRFPVQTYVAEFRPDVVREAIRREIQRGGQVFFVHNRVEDMEQVVHFLSQLV 880 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 PEAR I HGQM E+ELE+ M F +VLVCTTIIETG+D+P NT+II+ AD GL Sbjct: 881 PEARYGIAHGQMSEKELEQEMLAFLEHESDVLVCTTIIETGLDMPNVNTLIIDEADRLGL 940 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 QL+QLRGRVGRS+ +AY++ L K +T A+KRL AI + G+G +A DLEIR Sbjct: 941 GQLYQLRGRVGRSNRRAYSYFLYKPQKVLTEVAEKRLAAIREFTEFGSGLKIAMRDLEIR 1000 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLP 1013 GAG L+G +Q G + +GF LY ++L+ AV LK + +T +E+++ + LP Sbjct: 1001 GAGNLIGAQQHGHLAALGFELYSQMLKEAVQELKGE-----QVEEKIETSIEVQVDAYLP 1055 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKL 1073 D +I + + + Y+R+ + E +L + ELIDRFG P LL I R++ A + Sbjct: 1056 DIYIGERQLKAALYQRMVAIDNEEDLSMMIDELIDRFGTPPREVENLLKIVRIKWMASGM 1115 Query: 1074 GIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRL--DGPTRLKFIQDLSE--RK 1129 I +++ ++ V FA ++ L+ + + P G L+ L ++ Sbjct: 1116 KIEQIQQLKQQMVFRFAADPGISGEMLMTMATQSPYPVSFGTTGNGNLEIKVRLRSVVQE 1175 Query: 1130 TRIEWVRQFM 1139 +E + + + Sbjct: 1176 ELLEAIHKVL 1185 >UniRef50_A0L867 Transcription-repair coupling factor n=2 Tax=Bacteria RepID=A0L867_MAGSM Length = 1198 Score = 1137 bits (2942), Expect = 0.0, Method: Composition-based stats. Identities = 495/1191 (41%), Positives = 705/1191 (59%), Gaps = 71/1191 (5%) Query: 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT---DQMVMN 69 +L ELT A + L E+A PVVL+ +Q A + E+ F ++ Sbjct: 17 RKSPLILPELTTGASSWLAVELALTQPAPVVLVTGKVQRAESIARELLFFGAQRGVHILP 76 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQL--------------PTMQRGVLIVPVNTLMQ 115 WETLP++ SP+ ++ RL+TL +L R V+I +MQ Sbjct: 77 FPAWETLPFEPLSPYGPLVGDRLATLSRLIGLGKSGPISIGNELGDSRTVVITTPAAIMQ 136 Query: 116 RVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175 R+ P + L + G +L+ R L +GY V QV E GEYA RG L+DLFP G Sbjct: 137 RLMPKAVLARYGFAFSVGDQLNLPQFRELLTRSGYNPVSQVSEPGEYAARGGLIDLFPPG 196 Query: 176 SELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF 235 + P R++ F DE++S+R+FD +QR+L+ + A+ +LP E + I FR+ +R+ F Sbjct: 197 RDEPVRVELFGDEVESIRLFDPSNQRSLDPIPAVEVLPVREVILNADTISCFRTAYREVF 256 Query: 236 EVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERF 295 + IY+++S+ G+E + PLF+ + L LF Y P TL + D+ E Sbjct: 257 GGYAAEDLIYKEISQNRTYQGMEQYLPLFYPD-LDTLFDYLPKQTLFLMEPDVPNQIEER 315 Query: 296 QADTLARF----------ENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLP 345 + + E + +L+L EL LK +P++ P Sbjct: 316 AREIEDQHRIAYQAGQGNEKGYDGSSMRCIARNTLYLDQRELTERLKPYPQLLQSATGKP 375 Query: 346 TKAANANLGFQKLPDLAVQAQ------------QKAPLDALRKFL---ETFDGPVVFSVE 390 +L +P + Q +D L + + + + F Sbjct: 376 ----ALDLDLHPIPPIQEGVQGADHSQQDEKKATATVMDRLCRQISLWQKEQRRIGFVSR 431 Query: 391 SEGRREALGELLARIKIAPQRIMRLD---EASDRGRYLMIGAAEHGFVDTVRNLALICES 447 + G+RE + ELL K++ +A R L++G GF R++ LI E Sbjct: 432 TIGQRERMRELLTDHKVSVVDGSSWSALLQADPRQPMLLLGDVSDGFEHPTRHVVLISED 491 Query: 448 DLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGE 507 ++ G R R+ D LI + A+L+ G VVH++HGVGR+ G+ +LE G + + Sbjct: 492 NVFG---VRIRRRQISRRYLDQLIASFADLNEGDAVVHVDHGVGRFGGLVSLEVGQLKND 548 Query: 508 YLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAE 567 +L++ YA+ KLYVPV +L + +++ E L KLGG W++ R KA +K+ ++A E Sbjct: 549 FLLIIYADGDKLYVPVENLDRVGKHSS--GEEVQLDKLGGKRWAKTRAKARKKILEMAEE 606 Query: 568 LLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 L+ I AQR A +G + YQ F +FPFE T DQA+AI AVL DM P AMDRLVC Sbjct: 607 LVAIQAQREATQGVVYSGPDALYQEFASTFPFEETVDQAKAIEAVLEDMASPKAMDRLVC 666 Query: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 GDVGFGKTEVA+RA F A + KQVA+LVPTT+LAQQHY+NF R A +P++++++SRFR Sbjct: 667 GDVGFGKTEVALRATFRAAMDGKQVAILVPTTILAQQHYENFAKRLAGYPIKVDILSRFR 726 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 + KEQ + V G ID+++GTH+LLQ+DVKFKDLGLL+VDEE RFGV HKERIK +RA Sbjct: 727 TPKEQKATIEAVGHGTIDVIVGTHRLLQTDVKFKDLGLLVVDEEQRFGVSHKERIKNLRA 786 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREIL 807 +DILTLTATPIPRTLNMAM+G+RD+SIIA+PPA RLA++T + YD VREAILRE+ Sbjct: 787 TLDILTLTATPIPRTLNMAMAGVRDISIIASPPADRLAIRTIITHYDKQQVREAILRELY 846 Query: 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 RGGQV+Y++N V++I++ A+ +AELVPEAR+ + HGQMRE +LE+VM +F+ Q FN+LVC Sbjct: 847 RGGQVFYVHNQVQDIERKAQEIAELVPEARVGVAHGQMRENQLEKVMMEFYRQTFNILVC 906 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 TTI+E G+DIPTANTIII+RAD FGLAQLHQLRGRVGRS H+AYA++L PH + +T A+ Sbjct: 907 TTIVENGVDIPTANTIIIDRADKFGLAQLHQLRGRVGRSKHRAYAYMLVPHLRRLTKHAE 966 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK 987 KRLEA+ SL +LGAGF LATHDLEIRGAG +LG+EQSG ++ +GF LY ++L AV AL+ Sbjct: 967 KRLEALESLGELGAGFMLATHDLEIRGAGNILGDEQSGQIKEVGFELYNQMLREAVVALQ 1026 Query: 988 AGREPSLED--------------LTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASA 1033 R + + L + + +P++++ DV+ RL+ YKRIA Sbjct: 1027 TARAQGRDLASTTPLGQAPVDEGPAPVVPSINLHLSTYIPEEYVEDVHQRLTLYKRIAEL 1086 Query: 1034 KTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKN 1093 KT EL+E+++EL DRFG LP LL + +++ KL I KL+ KGG +F E Sbjct: 1087 KTYEELQEMRLELADRFGPLPATVDHLLSVMEIKRLCVKLRIIKLDAGPKGGTFQFDELF 1146 Query: 1094 HVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD--LSERKTRIEWVRQFMREL 1142 V LI ++Q++ H RLD +R +++ SE K R++ VR+ + L Sbjct: 1147 TVEIPRLIAMVQREVGHARLDQTSRTLILRNRPWSEDKQRLQEVREALTTL 1197 >UniRef50_C9RA21 Transcription-repair coupling factor n=1 Tax=Ammonifex degensii KC4 RepID=C9RA21_AMMDK Length = 1123 Score = 1137 bits (2942), Expect = 0.0, Method: Composition-based stats. Identities = 412/1147 (35%), Positives = 607/1147 (52%), Gaps = 42/1147 (3%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 P + ++AG+ + + L+G A + L+A +V++ PD + AL L E+ Sbjct: 12 PSVQKIKTALQAGKPQAVYGLSGTALSFLLAATFREWPAGMVIV-PDEETALTLAAELKL 70 Query: 62 FTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 + V E P + RL +L L Q GV++ L+Q + P Sbjct: 71 LWGEEVFVFLPREIFGLGPSLPSAFVPRQRLLSLAALARRQ-GVVVATAPALLQGLAPPE 129 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 H + KG+ LS + L +L GY V V G++A RG ++D FP S LP R Sbjct: 130 NFSPHCWELWKGEELSPEELGQRLVETGYVRVSAVEVPGQFARRGGIVDFFPPSSPLPVR 189 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP 241 ++F DEI + FD SQR+ +EA+ + PA E P E+ W Sbjct: 190 VEFDGDEIARIATFDPASQRSQTRLEAVKVEPAVEVPNPCTGREILPESW---------- 239 Query: 242 EHIYQQVSKGTL-PAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL 300 +S+G E P F + L +Y P L +A+ Sbjct: 240 -----FLSQGEDSFPYPEVLLPCLFP-RVVSLLAYLPPGAPLALVEAQAAEKAAREAEER 293 Query: 301 ARFE-NRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLP 359 + + + +L E+ EL +P +L+ LP K LG Sbjct: 294 QMEICREMIAKKKLPEESRKAFLSWSEVAKELSLYPH-RLRLSFLPEKNGEV-LGLAVRT 351 Query: 360 DLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEAS 419 + + + +++F+ V+ V+ E R + + E L I P+ D A Sbjct: 352 APSFLGKFAQLAEEIQEFMR--HYRVILLVDKEERVKGVVEGLKEYGIIPRLT--PDSAP 407 Query: 420 DRGRYLMIG-AAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELH 478 ++ G GF+ L+ +++ G R A + P ++ E Sbjct: 408 VGTVTVVKGGNLREGFIFPEAQFVLLTPAEIFGRRQA------TFSPTPTPVVEEEREFK 461 Query: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEE 538 G+ VVH EHG+G Y G+ L G+T EY ++ YA + +LY+P L ++ RY GG Sbjct: 462 PGEYVVHPEHGIGIYRGLVQLSVEGVTREYALIQYAGEDRLYLPADQLGVLERYVGGEGA 521 Query: 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFP 598 L +LGG W R R + + DVA ELL +YA R +G AF D + F +FP Sbjct: 522 KPRLSRLGGGEWKRVRARVKQAATDVARELLRLYAMRETAKGHAFSPDTPWQREFEAAFP 581 Query: 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 658 +E TPDQ +AI V +DM +P MDRL+CGDVGFGKTE+A+RAAF AV + KQVAVLVPT Sbjct: 582 YEETPDQLRAIADVKADMEKPRPMDRLICGDVGFGKTEIALRAAFKAVMDGKQVAVLVPT 641 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 T+LAQQHY F RFA +P+R+ + RF++ EQ +++ + G IDI+IGTH+LLQ+DV Sbjct: 642 TILAQQHYRTFSSRFAPYPIRVAWLCRFQTPAEQREVIKGLKAGTIDIVIGTHRLLQNDV 701 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 +F+DLGL+I+DEE RFGV KE++K +R VD+LTLTATPIPRTL M++ G+RD S + T Sbjct: 702 QFRDLGLVIIDEEQRFGVLQKEKLKLLRKEVDVLTLTATPIPRTLYMSLVGLRDTSCLTT 761 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 PP RL V+T+V E D ++REAI RE+ RGGQVY++YN V I + A + LVPEAR+ Sbjct: 762 PPPDRLPVETYVVEEDPAIIREAIRRELARGGQVYFVYNRVAGIVEVANWVKHLVPEARV 821 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 A HGQM E LER+M DF +++VLV TTI+E G+DI NT+I++ AD GL+QL+Q Sbjct: 822 AYAHGQMPEAALERIMLDFIDHKYDVLVATTIVENGLDIGNVNTLIVKDADQLGLSQLYQ 881 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 LRGRVGR++ AYA+ L K + A+ RL AI LGAGF +A DLEIRGAG L Sbjct: 882 LRGRVGRTNRLAYAYFLYRRDKIINEAAKARLRAIKDFTSLGAGFKVAKRDLEIRGAGNL 941 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIP 1018 LG EQ G ++ +G LY LL+ A+ LK E + +EL + + +PDD++P Sbjct: 942 LGTEQHGHIQAVGLELYCRLLQEAIKELKGE-----EVVPPVDPVIELTVSAYIPDDYVP 996 Query: 1019 DVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 + +L Y+ ++ A+T E+E + DR+G P P R LL +ARLR QA++L ++ + Sbjct: 997 -FDQKLEIYQELSRAETPEEVEGLAEGYRDRYGPFPPPFRNLLAVARLRAQAKRLRLKLI 1055 Query: 1079 EGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQ---DLSERKTRIEWV 1135 + FA + ++PA L+ + K ++ +G + + E + ++ + Sbjct: 1056 GRQGGFYRLVFAPGHQLSPAKLVAVADKWGARFKQEGEDFVILLPASGRGPEGEPELKKL 1115 Query: 1136 RQFMREL 1142 QF+ L Sbjct: 1116 SQFLVAL 1122 >UniRef50_A9A0K9 Transcription-repair coupling factor n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A9A0K9_DESOH Length = 1174 Score = 1135 bits (2936), Expect = 0.0, Method: Composition-based stats. Identities = 395/1166 (33%), Positives = 611/1166 (52%), Gaps = 40/1166 (3%) Query: 9 LPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ--- 65 L AGE + A A +V+ I + PV+++ + A R ++ F Sbjct: 17 LETGAGEVVC-AGVGKGADAFMVSRIGQTLNVPVLVVTASAREAQRFTEDARFFQPADAR 75 Query: 66 -MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM-QRGVLIVPVNTLMQRVCPHSFL 123 V + +PY + H + R+ LY + VL++ V+ L+Q+ P L Sbjct: 76 AEVALFPSYTVMPYRPVAYHNRTAAERIQLLYGMSEGLAPAVLVLAVDALLQKTIPPGDL 135 Query: 124 HGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLD 183 A + +G+ L AL +L + GY V E G+++ RG ++DLF E P R+D Sbjct: 136 CEFAQTVSEGESLDPTALAEKLVAGGYTRTAIVEEPGDFSIRGGIVDLFSPFHEAPARID 195 Query: 184 FFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP-- 241 F D ++S+ F +QR I LLPA E K I + + P Sbjct: 196 LFGDTVESIHFFSPVTQRRGRPTSGITLLPARETVLAKDRIGRLIAAVKKRSAELNLPVS 255 Query: 242 --EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQA 297 I ++ +GT G+E PL + E LF Y P TLLV + G + AE Sbjct: 256 VSRDIIDRMEQGTDTEGMESLMPLVY-ETPATLFDYLPGKTLLVMVDPGMIAEKAENHGR 314 Query: 298 DTLARFENRGVDPMRPLLPPQSLWLRV-----DELFSELKNWPRVQLKTEHLP------- 345 +E + R +PP +L+L + L ++P + + Sbjct: 315 LATELYETAR-EEGRWCVPPDALYLDWQAVQKEAFKKPLLSFPVLPVSATPEDGDNTPVV 373 Query: 346 TKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDG---PVVFSVESEGRREALGELL 402 A + L L L ++E G V + + + + L Sbjct: 374 ETAGVTDNSAVTLMLRTQPRDTDTVLTPLLSWIEENRGLGCVSVIACGGRAQVDRMAYFL 433 Query: 403 ARIKIAPQRIMRLDEASDRG--RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQD 460 ++ + + L+ G GF LA+I ++++ G R Sbjct: 434 TSHRVPHESLDAFSSMGRGSDTVCLVSGQLSAGFRFAAEGLAVITDTEIFGRVRHRSSAG 493 Query: 461 SRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLY 520 + + + +L L G VVH++HG+GRY G+ + GI ++L+L+Y + +LY Sbjct: 494 KKGARD---VYLDLETLKQGDLVVHVDHGIGRYEGIRKVTVEGIANDFLLLSYRDGDRLY 550 Query: 521 VPVSSLHLISRYAGGAEENAPL-HKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 + V + + +Y G + APL K+G W R + KA ++ +A ELLD+YA+R ++ Sbjct: 551 LSVDRMDMARKYVGADDAEAPLLDKMGAKTWGRVKAKARKEAEKIAKELLDLYARRRVQQ 610 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 G F + + F F FE T DQ + IN VLSDM MDRLVCGDVG+GKTEVAM Sbjct: 611 GHGFHPPGQWFSDFEAGFDFEETDDQLKVINEVLSDMASSTPMDRLVCGDVGYGKTEVAM 670 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 R++F+ V + QVAVLVPTT+LA+QH+ F RFA +P I +SRF++ Q QI+A++ Sbjct: 671 RSSFMCVCDGFQVAVLVPTTVLAEQHFATFSRRFAGYPFNIACLSRFKTPARQKQIVADL 730 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 EG++DI+IGTH+LL DV FK LGL+I+DEE RFGV+HKE +K MR VD+L+LTATPI Sbjct: 731 KEGRVDIVIGTHRLLSKDVAFKQLGLVILDEEQRFGVKHKETLKKMRTTVDVLSLTATPI 790 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTL+M++SGMRD+S+I TPP R A+KT++ E+D ++R AI +E+ RGGQ+Y+++N++ Sbjct: 791 PRTLHMSLSGMRDISVITTPPEHRKAIKTYISEFDDAIIRTAIRKELERGGQIYFVHNNI 850 Query: 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 I A+ L +LVPE R+ I HG++ + LE M F ++ ++LVCT IIE+GIDIP+ Sbjct: 851 HKIAFIADHLKKLVPEVRLGIVHGRLDQNTLETCMMQFVNREIDMLVCTRIIESGIDIPS 910 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 ANTI I RAD FGLAQ++QLRGRVGRS QAYA+L P A+ DA+KRL+ + DL Sbjct: 911 ANTIFINRADMFGLAQIYQLRGRVGRSDEQAYAYLFIPRESALGKDARKRLKVLMEHSDL 970 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 G+GF +A +DL+IRG G LG QSG + +G+ ++++L+E AV LK + Sbjct: 971 GSGFQIAMNDLKIRGGGAALGVSQSGHITAVGYDMFLQLMEQAVAELKGE-----PVTET 1025 Query: 1000 QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPART 1059 E+ + + S L + +I D++ R++ Y+R++ E+ +K EL DRFG LP A Sbjct: 1026 LNPEINIPVSSFLSEAYISDIDQRMAIYRRLSRVTETREITAVKTELEDRFGPLPAEAEN 1085 Query: 1060 LLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRL 1119 LL L+ A +G+++L+ + + F++ + A + L ++ P ++ P + Sbjct: 1086 LLLKIMLKTMAAGMGVKRLDLADTQMHLRFSDDRLPDAAAVDVLARENPVTVKIVPPDGV 1145 Query: 1120 KFIQDLSERKTRIEWVRQFMRELEEN 1145 + + I + ++ L Sbjct: 1146 FITFTGKKGRGAIGAAKNILKALAGR 1171 >UniRef50_Q03SZ8 Transcription-repair coupling factor (Superfamily II helicase) n=34 Tax=Lactobacillaceae RepID=Q03SZ8_LACBA Length = 1180 Score = 1129 bits (2920), Expect = 0.0, Method: Composition-based stats. Identities = 378/1162 (32%), Positives = 624/1162 (53%), Gaps = 40/1162 (3%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN- 69 + G+++L+ L G+A +A + +V + + +A +L D+++ D + Sbjct: 20 LGVGQRQLVTGLNGSAETLFIASLLHEQQRSLVYVTDTLYHASQLVDDLANLLDDDELFD 79 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 E L + + + S+R+ L L + + V++ ++ L + + + Sbjct: 80 FPVEELLAAEVATSSPEYRSARIDALRALQSDRPVVVVTSLSGLRRFLPTPANFAAARFT 139 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 + G +AL+ +L + GY H V G++A RG+++D++P+ ++ P R+DFFD E+ Sbjct: 140 VSVGDEFDLEALQQKLFAMGYAHQKLVAAPGDFAVRGSIIDIYPLAADYPIRIDFFDTEV 199 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF-------------E 236 DSLR FD +QR+++ + + +LPA +F + R T Sbjct: 200 DSLRYFDPATQRSIDNGQTVEVLPATDFILTADERATGATALRTTLQAQAADLAAEDATT 259 Query: 237 VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAER 294 + + + + KG++ + + F E + Y P + +++ + L+ + + Sbjct: 260 LTNQVQPLIDGLQKGSVDPQLLEFADYLFPE-HHQVLDYLPDDGVVLFGDYVRLQDAERQ 318 Query: 295 FQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL--KTEHLPTKAANAN 352 D ++ + Q + ++ L + + + A Sbjct: 319 LLEDEANWATDKLA---HHQIFTQQTFGGELRPIVRADKHAQIMLALFQKGMGSLRFQAM 375 Query: 353 LGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRI 412 Q + ++ + VV V+ E R + + L +I Sbjct: 376 TNMTTRAMQQFFGQLPVMKTEIDRWHKQQ-QTVVLLVQDEERLAKIEQTLDDFEIQAVLT 434 Query: 413 MRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIR 472 + L+ + GF +L +I E+++ + +R + T+ ++ Sbjct: 435 KSAN-LQPALTQLVPERLQTGFELPEASLVVITEAEMFQKVTKKRPRRQ--TMANAERLK 491 Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 + +L G VVH+ HG+G++ GM TL G+ +Y+ + Y ++A+L++PV+ L+LI +Y Sbjct: 492 SYTDLKPGDYVVHVNHGIGKFIGMQTLTVDGVHQDYMTIDYQDNAQLFIPVTQLNLIQKY 551 Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 ++ ++KLGG W++ + K A K+ D+A EL+D+YA+R+A++G+AF D Sbjct: 552 VSSEDKKPKINKLGGSEWAKTKSKVAAKIEDIADELVDLYAKRSAEKGYAFPVDDSLQHD 611 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F + FP+ TPDQ + I V DM +P MDRL+ GDVG+GKTEVA+RAAF AV+ KQV Sbjct: 612 FENDFPYAETPDQLRTIEEVKHDMEKPRPMDRLLVGDVGYGKTEVALRAAFKAVEAGKQV 671 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 A LVPTT+LAQQHYD RF +P+ +EM SRFR+ K+ Q + ++ G++DI++GTH+ Sbjct: 672 AFLVPTTILAQQHYDTMVSRFEGYPINVEMFSRFRTTKQIHQAIKDLETGQLDIVVGTHR 731 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 LL DVKFK+LGL++VDEE RFGV+HKER+K ++ANVD+LTLTATPIPRTL+M+M G+RD Sbjct: 732 LLSQDVKFKNLGLVLVDEEQRFGVKHKERLKQLKANVDVLTLTATPIPRTLHMSMLGVRD 791 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 832 LS+I TPPA R ++T+V E ++ +++ I RE+ RGGQV+YL+N V++I+K ++ L Sbjct: 792 LSVIETPPANRFPIQTYVMEQNAGAIQDGIRREMQRGGQVFYLHNRVDDIEKTVGQIQVL 851 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 VPEAR+ HG+M E +LE V+ DF ++VLV TTIIETGIDIP ANT+ +E AD G Sbjct: 852 VPEARVGYIHGKMTEAQLEGVLFDFLRGDYDVLVTTTIIETGIDIPNANTLFVENADRMG 911 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 L+QL+QLRGR+GRS+ AYA+ K +T ++KRLEAI +LG+GF +A DL I Sbjct: 912 LSQLYQLRGRIGRSNRVAYAYFTYQPNKVLTEVSEKRLEAIKDFTELGSGFKIAMRDLSI 971 Query: 953 RGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLL 1012 RGAG LLG++Q G + ++G+ LY ++L +AV + + T +EL + + L Sbjct: 972 RGAGNLLGKQQHGFINSVGYDLYTQMLSDAVAKKRGQK-----TQPKTDTTIELGVEAYL 1026 Query: 1013 PDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 P D+I D ++ YKRI + ++E+ EI+ +LIDRFG P LL I +L+ A Sbjct: 1027 PSDYIEDEQQKIEMYKRIRQLEDDDEVSEIQADLIDRFGEYPPAVDQLLTIGQLKLAADL 1086 Query: 1073 LGIRKLEGNEKGGVIEFAEKNH--VNPAWLIGLLQKQPQHYRLD-GPTRLKFIQDLSERK 1129 + K+ + +++ + + L + RL L Sbjct: 1087 ALVDKIRRVNGDVFVTVSKQGTEILGGEDVFKALAVTQLKATVGINDDRLHIKLVLQPNM 1146 Query: 1130 TRIEWVRQF------MRELEEN 1145 T +W+ Q +RE+ E Sbjct: 1147 TTTDWLPQVQAFMVTLREIVEQ 1168 >UniRef50_B6ISZ9 Transcription-repair coupling factor n=96 Tax=Alphaproteobacteria RepID=B6ISZ9_RHOCS Length = 1209 Score = 1129 bits (2920), Expect = 0.0, Method: Composition-based stats. Identities = 435/1130 (38%), Positives = 633/1130 (56%), Gaps = 33/1130 (2%) Query: 45 IAPDMQNALRLHDEISQF-TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPT--- 100 +A D A RL + +S F V+ W+ LPYD SP+ DI++ R+ L +L Sbjct: 45 VATDDARAARLAEAVSFFDPGIEVILFPAWDCLPYDRVSPNGDIVARRIDALTRLLEPAA 104 Query: 101 -MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEH 159 + +L+ VN + +V P + + G R++ L+ L + GY V E Sbjct: 105 KDRALLLVTTVNAALHKVPPRLAFRNASFRARVGDRINLPELQRFLANNGYTKAQTVREP 164 Query: 160 GEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT 219 GE+A RG ++DLFP G+ P RLD F D++D +R FD +Q T E+ + L P E Sbjct: 165 GEFAVRGGIVDLFPPGTAEPLRLDLFGDDLDGVRAFDPMTQLTTEKRDGFVLKPMSEVFL 224 Query: 220 DKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN 279 D+ +I FR+ +R+ F + +Y+ VS G AG+E+W PLF S L LF Y P Sbjct: 225 DEMSISRFRTGYRELFGAVTGDDPLYEAVSAGRKYAGMEHWLPLFHS-GLETLFDYMPDA 283 Query: 280 TLLVNTGDLETSAERFQA--------DTLARFENRGVDPMRPLLPPQSLWLRVDELFSEL 331 + ++ E +R + TL E + +P+ +PP L + L Sbjct: 284 PVTLDPHVEEARDQRLEQVRDFFEARRTLQEAEKKSGNPVYRPVPPGMTVLDAEGWDLHL 343 Query: 332 KNWPRVQLKTEHLPTKAANANL---------GFQKLPDLAVQAQQKAPLDALRKFLETFD 382 P QL +N +L F + + + L Sbjct: 344 AVRPVAQLTPFAAAEAGSNPDLTDAGGRKGRDFADARVQSGVNVYDVLREHVGALLAD-G 402 Query: 383 GPVVFSVESEGRREALGELLARIKIA----PQRIMRLDEASDRGRYLMIGAAEHGFVDTV 438 VV + S G R+ L +L I + ++ L++ A +HGF Sbjct: 403 RRVVVAGYSTGARDRLRSVLKEHGIERVKAVESWAEVEGLPRTTTALVVLALDHGFTAP- 461 Query: 439 RNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTT 498 LA+I E D+LG+R+ R +R I + L+ G VVH++HG+GRY G+ T Sbjct: 462 -GLAVITEQDILGDRLVRAGGRKKR--RAANFIAEASGLNPGDLVVHIDHGIGRYDGLET 518 Query: 499 LEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAA 558 L+ GG + L L Y KLYVPV ++ ++SRY G + L +LGG W + + Sbjct: 519 LDVGGAPHDCLRLVYEGGDKLYVPVENIEVLSRY-GSEDSAGQLDRLGGAGWQSRKARVK 577 Query: 559 EKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQ 618 ++++D+AA LL I A+RA + + FC FP+ T DQ AI VL D+ Sbjct: 578 KRLKDMAAALLRIAAERALRTAPPVAVPDGAWDEFCARFPYAETDDQLHAIEDVLGDLSS 637 Query: 619 PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPV 678 MDRLVCGDVGFGKTEVA+RAAFLAV N QVAV+VPTTLLA+QHY F RFA PV Sbjct: 638 GRPMDRLVCGDVGFGKTEVALRAAFLAVMNGMQVAVVVPTTLLARQHYRTFEQRFAGLPV 697 Query: 679 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH 738 R+ +SR +AKE Q A +A+G +DI++GTH LL V FK LG++IVDEE FGV+ Sbjct: 698 RLGQLSRLATAKETAQTKAGLADGTVDIVVGTHALLSKSVDFKRLGMVIVDEEQHFGVKQ 757 Query: 739 KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVV 798 KER+K +RA++ +LTLTATPIPRTL +A+SG+R+LS+IATPP RLAV+TFV YD +V+ Sbjct: 758 KERLKELRADIHVLTLTATPIPRTLQLALSGVRELSLIATPPVDRLAVRTFVLPYDPVVI 817 Query: 799 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 858 REAILRE RGGQ +Y+ +E++++ +L ELVPE ++ + HGQM +LE VM F Sbjct: 818 REAILREHYRGGQSFYVCPRIEDLERVRLQLEELVPEVKVVVAHGQMPASQLEEVMTAFD 877 Query: 859 HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 +++VL+ T IIE+G+DIP+ANT+++ RAD FGLAQL+Q+RGRVGR+ + YA+L Sbjct: 878 EHKYDVLLATNIIESGLDIPSANTLVVHRADLFGLAQLYQVRGRVGRAKVRGYAYLTYQP 937 Query: 919 PKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMEL 978 ++ AQ+RL I +L+ LGAGF LA+HD++IRGAG LLGEEQSG + +G LY ++ Sbjct: 938 RTVLSATAQQRLHVIETLDSLGAGFQLASHDMDIRGAGNLLGEEQSGHIREVGVELYQQM 997 Query: 979 LENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENE 1038 LE AV ++GR S ++ L MP L+P+ ++PD+N RL+ Y+R++ E Sbjct: 998 LEEAVADARSGRGAEQAAEDSWSPQINLGMPVLIPESYVPDLNVRLTLYRRVSDLTDRQE 1057 Query: 1039 LEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPA 1098 ++ ELIDRFG LP+ LL + +++ ++ G+ L+ KG V+ F + NPA Sbjct: 1058 IDAFAAELIDRFGPLPEEVDNLLRLVEIKRLCKEAGVANLDAGPKGAVVGFRNNSFRNPA 1117 Query: 1099 WLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAIA 1148 L+ +QKQ +L +L ++ ++R+ VRQ M L + A Sbjct: 1118 RLVDFMQKQAGTAKLRPDHKLVLLRPWDSPESRMAGVRQLMLSLAQMAAG 1167 >UniRef50_Q49V12 Transcription-repair-coupling factor n=58 Tax=Staphylococcus RepID=MFD_STAS1 Length = 1170 Score = 1128 bits (2919), Expect = 0.0, Method: Composition-based stats. Identities = 385/1163 (33%), Positives = 635/1163 (54%), Gaps = 26/1163 (2%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 ++Y+ V E L+ L+GAA AT++AE ++++ ++ A +L ++ Q Sbjct: 12 DKRYQELNEVFGKENVLVTGLSGAAKATIIAEKYLNSEQQLLVVTNNLYQADKLESDLLQ 71 Query: 62 FTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 F + + + + + + +S R+ TL L +RG+ IVP+N L + + P Sbjct: 72 FVEDSEIYKYPMQDIMTEEFSTQSPQFMSERVRTLTALAQEERGLFIVPLNGLKKWLTPV 131 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 H L + G + D +L + GYR V GE++ RG ++D++P+ + P Sbjct: 132 DMWKSHQLTLNVGDDIDIDEFLNKLVNMGYRRESVVSHIGEFSLRGGIVDIYPLIGK-PV 190 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R++FFD E+DS+R FDV+SQR+ +E +++ A ++ + ++ + + + +E R Sbjct: 191 RIEFFDTEVDSIRDFDVESQRSEGNIEHVDITTASDYIITEDVLKHTKHKLKQAYEDTRP 250 Query: 241 PEHIYQQVSKGTLPAGIEYWQP------------LFFSEPLPPLFSYFPANTLL-VNTGD 287 + + ++ F E + YF + ++ V+ + Sbjct: 251 KIEKSVRNELKETYESFQLFEAEMFDHQVLRRLVAFMYEQPATIMDYFKEDAIIAVDEYN 310 Query: 288 LETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLP-T 346 E + F ++ + + +L+ + + LK + Sbjct: 311 RIKETETTLVTEIDEFMQNLIESGKGFI--DQSFLQYEGFENLLKPFAVTYFTLFTATMP 368 Query: 347 KAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIK 406 N + F P Q ++F++ D +V E+E ++E + +L + Sbjct: 369 VQLNEIIKFSCKPVQQFYGQYDIMRSEFQRFIQN-DYTIVVLAETETKKERIQSMLNEMH 427 Query: 407 IAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTIN 466 I + G+ GF L ++ E +L +++ +T+ Sbjct: 428 IPTFIDTPSRRNEGGSAIITEGSLSEGFELPYMQLVVVTERELFKS-KQKKKPKQHKTLT 486 Query: 467 PDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSL 526 I++ +L +G VVH+ HGVGRY G+ TLE GG+ +Y+ L Y +L+VPV + Sbjct: 487 NAEKIKSYQDLKVGDYVVHVHHGVGRYLGVETLEVGGVHKDYIKLQYKGTDQLFVPVDQM 546 Query: 527 HLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 + +Y +++ L+KLGG W + + K + V D+A EL+++Y R G+ F D Sbjct: 547 DQVQKYVASEDKSPKLNKLGGTEWKKTKAKVQQSVEDMADELIELYKAREMSVGYKFGPD 606 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 + F FP+E TPDQ+++I + DM MDRL+CGDVG+GKTEVA+RAAF AV Sbjct: 607 TAEQNDFEIDFPYELTPDQSKSIEEIKQDMEIERPMDRLLCGDVGYGKTEVAVRAAFKAV 666 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 KQVA LVPTT+LAQQHY+ +R ++P+ +++ISRFR+ KE + + G +DI Sbjct: 667 MEGKQVAFLVPTTILAQQHYETLIERMQDFPIEVQLISRFRTTKEVKETKEGLKSGFVDI 726 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 ++GTHKLL D+++KDLGLLIVDEE RFGVRHKERIK+++ NVD+LTLTATPIPRTL+M+ Sbjct: 727 VVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERIKSLKNNVDVLTLTATPIPRTLHMS 786 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 M G+RDLS+I TPP R V+T+V E ++ ++EA+ RE+ R GQV+YLYN V++I + Sbjct: 787 MLGVRDLSVIETPPENRFPVQTYVLEQNTNFIKEALERELSRDGQVFYLYNKVQSIYEKR 846 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 E+L L+P+A I + HGQM ER+LE M F + ++++V TTIIETG+D+P ANT+IIE Sbjct: 847 EQLQMLMPDANIGVAHGQMNERDLEETMLSFINHEYDIIVTTTIIETGVDVPNANTLIIE 906 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 AD FGL+QL+QLRGRVGRS YA+ L P K ++ A+ RL+AI +LG+GF +A Sbjct: 907 DADRFGLSQLYQLRGRVGRSSRIGYAYFLHPTNKVLSETAEDRLQAIKEFTELGSGFKIA 966 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVEL 1006 DL IRGAG LLG++Q G ++++GF LY ++LE AV+ + + + + + E+EL Sbjct: 967 MRDLNIRGAGNLLGKQQHGFIDSVGFDLYSQMLEEAVNEKRGIKAEKQD---APEIEIEL 1023 Query: 1007 RMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARL 1066 + + LP ++IP+ +++ YK++ ++E +L ++K ELIDRF P LL++ + Sbjct: 1024 NIDAYLPAEYIPNEQSKIEIYKKLRKIESETQLMDVKDELIDRFNDYPIEVERLLEMMEI 1083 Query: 1067 RQQAQKLGIRKLEGNEKGGVIEFAEK--NHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD 1124 + A G+ ++ K + +EK +N L Q + ++ K Sbjct: 1084 KVHALHAGVTLIKDVGKQVEVYLSEKGTTDINGETLFKQTQPLGRTMKVGVQEG-KMKVT 1142 Query: 1125 LSERKTRIEWVRQFMRELEENAI 1147 L++ ++ ++ + LEE+ + Sbjct: 1143 LNKTGNWLDSLKFLTKSLEESMV 1165 >UniRef50_C1F915 Transcription-repair coupling factor n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F915_ACIC5 Length = 1189 Score = 1125 bits (2910), Expect = 0.0, Method: Composition-based stats. Identities = 429/1172 (36%), Positives = 663/1172 (56%), Gaps = 44/1172 (3%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ- 61 EQ + L + G +R + LT A + + +A PVVL+ D + A +H + Sbjct: 20 EQAQRHLSLSRGRRR-VSGLTSTARSLYIPLLARAAKVPVVLLVADNKAADAMHLALRAG 78 Query: 62 ------FTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQ 115 + V+ L + LP+++ SPH ++ R +TL+++ T ++I PV Sbjct: 79 CELTGAIAAERVLKLPAHDVLPFENMSPHPEVQEQRATTLWKIATGDAAIVIAPVEAAAM 138 Query: 116 RVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175 ++ P F G A V+++G+ + D L T L S GY VD V G+Y RG +LD++ Sbjct: 139 KLFPAPFYGGLAQVLRRGEEIDVDMLLTHLASVGYEQVDVVEMPGQYTRRGGILDVYSPE 198 Query: 176 SELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWR-DT 234 ++ P R++FF DEI+++R FD +SQR+ ++ LLP E P + + ++ Sbjct: 199 ADRPVRMEFFGDEIETMRKFDPESQRSQSPLDEARLLPLTETPVTERLLAAVHARLSGAR 258 Query: 235 FEVKRDPEHIYQQVSKGTL--PAGIEYWQPLFFSEPLPPLFSYFPANTLLVN-TGDLETS 291 FE + E + + V+ G + G E++ + + L FP L V G ++ Sbjct: 259 FETNDEGEMVAEMVAAGGVSVFPGWEFFAGVAGANK--TLLDLFPRCVLFVEEPGMIKNQ 316 Query: 292 AERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEH----LPTK 347 ER+ R + + L+ P+ ++LR + L ++ K+ P + + L Sbjct: 317 VERWWNKVEQRHDRSSIGT---LIRPEDIYLRPELLEAQRKSHPGLDIDQLGAVDVLEDD 373 Query: 348 AANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKI 407 + F P L A ++ ++ ++ + ++ + ++G E L LL ++ Sbjct: 374 ETLGEIAFSSRPTLRFHGSIPAFVEQIKNLMQQ-ETRMLLAAPNQGEVERLATLLREYEL 432 Query: 408 APQRIMRLDEASDRGRY--------------LMIGAAEHGFVDTVRNLALICESDLLGER 453 + R+ Y ++ G NL + +DL E Sbjct: 433 PYRLGSRVMHTGSETMYDEASHLGGDLRTPIILRAPIATGVSLPDANLVVFGANDLNDEA 492 Query: 454 VARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTY 513 R +R++ I + +L +G VVH+EHG+ RY G+ + G T E+++L + Sbjct: 493 DVTARPAARKSKTAA-FISDFRDLAVGDYVVHVEHGIARYLGLKEIAQDGTTLEFMILEF 551 Query: 514 ANDAKLYVPVSSLHLISRYAGGA-EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIY 572 A +AKLYVP++ L LI +Y LH+LG W++ + + + ++D+A ELL +Y Sbjct: 552 AEEAKLYVPLTRLDLIQKYRSTESGPAPVLHRLGTQQWAKTKARVKKAMQDMADELLKLY 611 Query: 573 AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632 AQR A +G A+ D E + F DSF + T DQ AI + DM MDRL+CGDVG+ Sbjct: 612 AQRKAAQGHAYSADNEFQREFEDSFDYNETDDQLSAIADIKRDMESTTPMDRLLCGDVGY 671 Query: 633 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ 692 GKTEVAMRAAF AV + KQVAVL PTT+L+ QHY+ F+ RF +P+ IEM+SRFR+AKEQ Sbjct: 672 GKTEVAMRAAFKAVQDGKQVAVLTPTTVLSFQHYETFKKRFRQFPIHIEMLSRFRTAKEQ 731 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 I+ V G+IDILIGTH+LL D+KF D+GLLIVDEE RFGVRHKER+K +RA +D+L Sbjct: 732 KLIVERVEAGEIDILIGTHRLLSKDLKFHDIGLLIVDEEQRFGVRHKERLKQLRAQLDVL 791 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 T++ATPIPRTL+M++ G+RD+S+I TPP R+A++T V ++D +VR A+ E+ RGGQ+ Sbjct: 792 TMSATPIPRTLHMSLVGLRDMSVIETPPKDRMAIQTIVAKFDEKLVRSAVEVELERGGQI 851 Query: 813 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 Y+++N VE I + A ++ ELVP ARI +GHGQM E ELE+VM F + ++VLV T+IIE Sbjct: 852 YFVHNRVETIYEIAAKIQELVPHARITVGHGQMGEAELEKVMLAFMNHEYDVLVATSIIE 911 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 G+DIP ANTI+I RAD GL++L+QLRGRVGRS+ +AYA+L+ P + +T A++RL A Sbjct: 912 NGLDIPLANTILINRADRHGLSELYQLRGRVGRSNRRAYAYLMIPPEQELTEIARRRLAA 971 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP 992 + DLGAGF +A DLE+RGAG +LG EQSG +E +GF LY +LE AV+ +K Sbjct: 972 LKEFSDLGAGFKIAALDLELRGAGNMLGGEQSGHIEAVGFELYTTMLEEAVNKMKG---- 1027 Query: 993 SLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGL 1052 E + T++ L +P + D +IP+ N RL YK IA A+ E + I+ EL+DR+G Sbjct: 1028 -QETVERPVTQLSLGIPLRIDDSYIPEENQRLRMYKHIAGAQDERAIAGIRAELVDRYGA 1086 Query: 1053 LPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQ-PQHY 1111 LP R LLD A LR + +G+ +++ ++F EK ++P L+ L+ K + Sbjct: 1087 LPTGVRHLLDAAELRIACEHMGVAQVDRKRDQIHLKFTEKASIDPGILMKLVSKNAKRGA 1146 Query: 1112 RLDGPTRLKFIQDLSERKTRIEWVRQFMRELE 1143 + L+F ++ ++ +R + +L Sbjct: 1147 QFTPQGVLRFPLSGTDPESIFTELRVLLDDLA 1178 >UniRef50_Q1IHV1 Transcription-repair coupling factor n=2 Tax=Acidobacteria RepID=Q1IHV1_ACIBL Length = 1182 Score = 1118 bits (2891), Expect = 0.0, Method: Composition-based stats. Identities = 399/1173 (34%), Positives = 635/1173 (54%), Gaps = 40/1173 (3%) Query: 2 PEQYRYTLPVKAGE-QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60 PE R VK+G + + LT +A A A ++ P++++ P + A L + Sbjct: 17 PEFLRAATQVKSGTGRIRVSGLTPSARALHYALFSKATLKPLIVVVPSNRAAEELLPIVQ 76 Query: 61 QFTD-------QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTL 113 + + V+ L ++ LPY++ SPH +I +R + L+++ + +I P Sbjct: 77 AYCELTGTAHADAVVMLPAYDVLPYENLSPHPEIQEARAAALWKIVSGTARFVIAPFVAT 136 Query: 114 MQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFP 173 P F V+ +G + D LR L+++GY VD V GEYA RG +LD++P Sbjct: 137 AMHYRPAEFYFDLTKVINRGNSIDSDELRAHLNTSGYSTVDVVEMPGEYALRGGILDIYP 196 Query: 174 MGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWR- 232 SE P R++ F DE++S+R FD ++QR+ + + LLP + P + + ++ Sbjct: 197 PESEHPVRIELFGDEVESIRKFDTETQRSAGATDEVVLLPLSDTPVREDILGSIHAKLSG 256 Query: 233 DTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLL-VNTGDLETS 291 + + + T+ G EY+ ++ LF P +L + +E+ Sbjct: 257 RRLDADEETLEAIARAEGVTVFPGWEYYAGATANQR---LFDLLPNAAVLRDDPVKIESD 313 Query: 292 AERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANA 351 E + E GV L+ P+ L D + + P ++ + +++ Sbjct: 314 FEAWWERVQQSHERSGV---GHLVRPEDLLDSPDTWQQRIASLPGADVEQLGMYSESGE- 369 Query: 352 NLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQR 411 + Q A ++ ++ L V+F+ + G E L ++ + + + Sbjct: 370 QIAIQSQSTSKFHGSVPAMVEEVKALLTD-GRRVLFAAANTGEVERLADIFSEYMVPFRV 428 Query: 412 IMRLDEASDRG--------------RYLMIGAAEHGFVDTVRNLALICESDLLGE-RVAR 456 R ++ G L DL E VA Sbjct: 429 GSRSTRPGQETYIEEQGFFAEDLSATTVVKAYVPEGVAMPESRFVLFGTRDLFDESEVAS 488 Query: 457 RRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLE-AGGITGEYLMLTYAN 515 +Q R + + +L I VVH+EHG+G+Y G+ + G E+++L YA Sbjct: 489 AQQPKRSRSKVSAFLSDFRDLTINDYVVHVEHGIGQYQGLKEIAQGDGEPAEFMILEYAE 548 Query: 516 DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR 575 A+LYVP++ L LI +Y L++LG W++ + + + ++D+A ELL +YA R Sbjct: 549 GARLYVPLTRLDLIQKYRSSEGVKPALNRLGTQQWAKTKARVKKAMKDMADELLKLYAAR 608 Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 +G AF + + F D+F F T DQ AI V DM MDRL+CGDVG+GKT Sbjct: 609 KTAKGHAFSATGQFEREFDDAFEFNETEDQENAIRDVRQDMESDTPMDRLLCGDVGYGKT 668 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 EV+MRAAF AV ++KQVAVL PTT+LA QH++ F+ RF+ +PV++EMISRFR+AK+Q +I Sbjct: 669 EVSMRAAFKAVSDNKQVAVLAPTTVLAFQHFETFKRRFSAFPVKVEMISRFRTAKQQKEI 728 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 + V G++DILIGTH++L D+ F DLGL+++DEE RFGVRHKER+K +R VD+LT++ Sbjct: 729 VERVNNGQVDILIGTHRVLSKDIHFPDLGLVVIDEEQRFGVRHKERLKQLRKEVDVLTMS 788 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYL 815 ATPIPRTL+M++ G+RD+S+I TPP R+A++T V ++D +++ AI +E+ RGGQ+Y++ Sbjct: 789 ATPIPRTLHMSLLGLRDMSVIETPPKDRMAIQTVVAKWDEKLIKSAIEQELDRGGQIYFV 848 Query: 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 +N VE+I + ++++ ELVP+A+I +GHGQM E +LE +M F ++LV TTIIE G+ Sbjct: 849 HNRVESIYEISDKIHELVPKAKILVGHGQMGEGQLEDIMLKFMRHDADILVATTIIENGL 908 Query: 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 DIP NT+I+ RAD GL++L+QLRGRVGRS+ +AYA+LL P + +T A++RL A+ Sbjct: 909 DIPLCNTMIVNRADRHGLSELYQLRGRVGRSNRRAYAYLLVPPDRELTELARRRLAALKE 968 Query: 936 LEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLE 995 DLGAGF +A DLE+RGAG LLG EQSG +E +GF LY +LE V +K + Sbjct: 969 FSDLGAGFKIAALDLELRGAGNLLGGEQSGQIEAVGFELYTTMLERTVREMKGEVQ---- 1024 Query: 996 DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPD 1055 +T++ L + +P ++I + N RL YKR+A + E +L ++ EL DR+G P Sbjct: 1025 -EEQAETQLNLGLNIRIPPEYIKEENQRLRMYKRVAGVEGEPQLNDVAAELQDRYGAPPA 1083 Query: 1056 PARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDG 1115 P R L+ ARLR A+++GI ++ + F EK ++P L + + + Sbjct: 1084 PVRNLIQYARLRLLAERIGIAGIDRQRDQINMRFTEKAQIDPEKLAKFVGRTKG-AKFTP 1142 Query: 1116 PTRLKFIQDLSERKTRIEWVRQFMRELEENAIA 1148 LKF + + +++L + A+A Sbjct: 1143 QGILKFALKAITADEVLNGLLALLQQLSDAAVA 1175 >UniRef50_D2LDK6 Transcription-repair coupling factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LDK6_RHOVA Length = 1249 Score = 1118 bits (2891), Expect = 0.0, Method: Composition-based stats. Identities = 427/1157 (36%), Positives = 648/1157 (56%), Gaps = 36/1157 (3%) Query: 20 GELTGAACATLVAEIAERHA------GPVVLIAPDMQNALRLHDEISQF-TDQMVMNLAD 72 + A L+A IA R V+ +A D Q L ++ F V++ Sbjct: 32 SGVPEGYDAFLIAAIARRLPADTAFQQAVLHVARDDQRLAELKSQLEFFAPGADVLSFPA 91 Query: 73 WETLPYDSFSPHQDIISSRLSTLYQLPT---MQRGVLI-VPVNTLMQRVCPHSFLHGHAL 128 W+ +PYD SP DI + R++TL +L + +++ VN +QRV P + + A Sbjct: 92 WDCVPYDRVSPDSDIEARRIATLARLAHAKGGKPAIIVLTTVNAALQRVPPLAAMKKSAA 151 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 + G R+S + + +L+ +G+ VME GEYA RG +LDL+ G P RLDFF D Sbjct: 152 RLAAGGRVSMEQVIVRLEGSGFMRTGTVMEPGEYAVRGGILDLYVPGHARPARLDFFGDT 211 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQV 248 ++++R FD +QRT + + LLP E P+ AA+++FR ++ + F + + +Y+ V Sbjct: 212 LETIRTFDPVTQRTQATRDGVTLLPISEIPSGDAAVKMFRQRYVELFGPGKGDDALYEAV 271 Query: 249 SKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNT-------GDLETSAERFQADTLA 301 S GT G+E+W PLF+ + + LF Y P + ++ LET A+ ++A Sbjct: 272 SAGTRYPGVEHWLPLFY-DGMDSLFDYLPNAVVTLDHLADDAAARRLETIADHYEARREG 330 Query: 302 RFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDL 361 + P L P++L+L +E ++L + + P A + F+ Sbjct: 331 LEQRSFGAPPYKPLKPEALYLAAEEWDAKLGERKVRRFEPFPQPDAKAVVQIDFKGKQGR 390 Query: 362 AVQAQQKAPLDALR-------KFLETFDGPVVFSVESEGRREALGELLARIK---IAPQR 411 + ++ D L + +++ V + + G RE LG +L+ Sbjct: 391 SFALERSESSDKLIPAVADHIRVMQSLGKRAVIACWTNGARERLGNMLSTHISRIEKVAN 450 Query: 412 IMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLI 471 I + +A + E G+ LA+I E D+LG+R+ RRR + ++ Sbjct: 451 IAEVRKADKSAVSFALLGIESGYETPD--LAIIAEQDILGDRLIRRR----KAKKASDVL 504 Query: 472 RNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISR 531 + L G +VH +HG+GR+ G+ T++A G + + L YA KL++P+ ++ L++R Sbjct: 505 VEASSLTPGDLMVHADHGIGRFIGLKTIDAAGAPHDCVELEYAGGDKLFLPIENMELLTR 564 Query: 532 YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 591 Y G E A L KLGG +W + K +++R +A EL+ + A R K + Y Sbjct: 565 Y-GSDEGTAQLDKLGGASWQGRKAKLKKRIRAMAEELIKVAALREMKPAPVLQVSDGAYN 623 Query: 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ 651 F FP+E T DQ +I AV D+ + MDRLVCGDVGFGKTEVA+RAAF+AV KQ Sbjct: 624 EFVTRFPYEETDDQLASIEAVADDLAKGRPMDRLVCGDVGFGKTEVALRAAFIAVMEGKQ 683 Query: 652 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 711 VAV+VPTTLLA+QHY F +RF +PV++ SR + KE T + G++DI++GTH Sbjct: 684 VAVVVPTTLLARQHYQTFVNRFQGFPVKVAQASRLVTPKEMTLTREGLKAGQVDIVVGTH 743 Query: 712 KLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR 771 LL + FKDLGLLIVDEE FGV HKER+K +R V +LTLTATPIPRTL +A++G+R Sbjct: 744 ALLAKSIGFKDLGLLIVDEEQHFGVAHKERLKNLREEVHVLTLTATPIPRTLQLALTGVR 803 Query: 772 DLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 831 ++S+IATPP RLAV+TF+ +D + +REA+LRE RGGQ +Y+ + ++ + A L E Sbjct: 804 EMSVIATPPVDRLAVRTFITPFDPVTLREALLRERYRGGQSFYVVPRISDLDEVATFLRE 863 Query: 832 LVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 VPE R HGQM +LE +M+ F+ + F+VL+ TTI+E+G+DIP ANT+I+ RAD F Sbjct: 864 QVPEIRFMQAHGQMAPTQLEDIMSAFYDKEFDVLLSTTIVESGLDIPNANTLIVHRADMF 923 Query: 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLE 951 GLAQL+QLRGRVGRS +AYA P +T A+KRL+ + SL+ LGAGF LA+HDL+ Sbjct: 924 GLAQLYQLRGRVGRSKTRAYAMFTIPPNGKITPQAEKRLKVLHSLDSLGAGFTLASHDLD 983 Query: 952 IRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSL 1011 +RGAG LLG+EQSG ++ +G+ LY +LE AV ALKA E+ + + +P L Sbjct: 984 LRGAGNLLGDEQSGHIKEVGYELYQSMLEEAVAALKANGGEEREEEEQWSPTINVGLPVL 1043 Query: 1012 LPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQ 1071 +P+ ++PD+ RL Y+R++ +LE EL DRFG PD + LL + +++ + Sbjct: 1044 IPEVYVPDLQVRLGLYRRLSGLHESADLENFAAELADRFGPPPDEVKHLLTVVQIKNYCR 1103 Query: 1072 KLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTR 1131 K GI +++ KG VI F K NP L+ + + +L +L + ++ + R Sbjct: 1104 KAGIAQVDAGPKGAVITFRNKKFANPQGLVKFMYEHGVQVKLQIDQKLVYKEEWDDGVER 1163 Query: 1132 IEWVRQFMRELEENAIA 1148 + R +REL A Sbjct: 1164 LRGARALVRELAAIAKG 1180 >UniRef50_B3T2A9 Putative TRCF domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T2A9_9ZZZZ Length = 1150 Score = 1114 bits (2881), Expect = 0.0, Method: Composition-based stats. Identities = 438/1131 (38%), Positives = 688/1131 (60%), Gaps = 10/1131 (0%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF--TDQMVMNLADWETLPYD 79 L G++ +AE + ++IAP++ +A L +EI+ F T + L D E LPYD Sbjct: 25 LYGSSINLALAERIKNDLDFKIVIAPEINSAEILCNEINYFSETGLSIELLPDLEILPYD 84 Query: 80 SFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRD 139 SP +I+SR L+QL VL++ ++L+ ++ P + + + G+ S Sbjct: 85 VSSPSNQVIASRSEILFQLLKGNIDVLVLNASSLLWKLPPRKYFEKESFTLSVGELFSMQ 144 Query: 140 ALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDS 199 + +L GY V V++ GE+ RG+L+DLF P R+DF D++ID +++FDVDS Sbjct: 145 QIGEKLRINGYERVSTVIKPGEFCIRGSLIDLFSPLYTNPIRIDFDDEKIDLIKLFDVDS 204 Query: 200 QRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEY 259 Q TL + ++ ++P+ +P A + F++ R+ F+ + +Y + G+ Sbjct: 205 QLTLNTINSVTIIPSEHYPKSSLAFDFFKTNMRNAFDGNQLEWPLYNFIETYAESHGVYN 264 Query: 260 WQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQS 319 + PLFF E + ++ Y T L GD++T + +Q RF N + +P L P Sbjct: 265 YLPLFF-ESMSSIWDYCKPGTELFCVGDIKTPIKDYQKLINQRF-NSQDNLSQPNLKPSE 322 Query: 320 LWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQA-QQKAPLDALRKFL 378 L+ E +++ + L+ + + ++ F P + A + + + L Sbjct: 323 LFFSATEQINKINEMHPINLQHQKCWKSHDHNSINFDTRPLEPLTAFKTSSMDKIIHGLL 382 Query: 379 ETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR--GRYLMIGAAEHGFVD 436 ET ++ S S+ R + L IA +R+ +E +R G ++ + F+ Sbjct: 383 ETSTNKILLSAGSKNRIAFIENQLREFSIASRRVSNWNEFLERRAGVFVTEKSISESFIT 442 Query: 437 TVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGM 496 +A+I E +L G R + R+ S +P+++I++L +L +G VVH EHG+G+Y G+ Sbjct: 443 AKSGIAVIGEIELFGRRSSTRKYRSPAGKDPESIIQDLKDLQVGSLVVHGEHGIGKYKGL 502 Query: 497 TTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQK 556 + + + E+L + YA L+VPV+ + +SR+ G + + + L LG + W + +K Sbjct: 503 SVMMVDNVNSEFLTIEYALGDLLHVPVTLMDQVSRFIGQSSDESILSHLGSNQWKKLCKK 562 Query: 557 AAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDM 616 ++ DVAAELL+IYA RA G + +++ Y+ FCD F + T DQA+ I VL DM Sbjct: 563 TKKQAYDVAAELLEIYANRAIAVGKSHVANQKDYENFCDGFEYVLTQDQAKVIEDVLDDM 622 Query: 617 CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANW 676 +MDRLVCGDVGFGKTEVA+RAAF N QVA+LVPTT+LAQQH++ F +RF+ W Sbjct: 623 AASKSMDRLVCGDVGFGKTEVALRAAFTCAINGYQVALLVPTTILAQQHFETFNERFSEW 682 Query: 677 PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGV 736 P+ I ++SR +++K Q+ A + +GK DI+IGTH LL V +K+LGL+IVDEEHRFGV Sbjct: 683 PIAINILSRLQTSKNNNQVRAGIEKGKADIIIGTHALLSDKVVYKNLGLVIVDEEHRFGV 742 Query: 737 RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSM 796 RHKE++KA+R +VD L LTATPIPRTLNMA+ ++D+S+IATPP R+ VKT++ ++D Sbjct: 743 RHKEKLKALRKDVDYLALTATPIPRTLNMAIGELKDISMIATPPEGRIPVKTYISQWDKS 802 Query: 797 VVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND 856 ++ EA REI RGGQV +++N +++I+ AE + +++P + I HG+M+ER LERVM Sbjct: 803 LIHEACQREISRGGQVLFVHNRIDDIENMAETIRQIIPVGSLEIAHGRMKERSLERVMMK 862 Query: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 F++ F++L+ T+IIE+G+DIP ANTIII RAD FGLAQLHQLRGRVGRS Q+YA+L+ Sbjct: 863 FYNNEFDILLATSIIESGLDIPNANTIIINRADRFGLAQLHQLRGRVGRSERQSYAYLMI 922 Query: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYM 976 P +T + ++RLEAI ++EDLG GF LATHDLEIRGAGE+LG+EQSG ++ IGFSLY Sbjct: 923 PSKHTLTNEGRQRLEAIEAIEDLGVGFILATHDLEIRGAGEILGDEQSGQIQKIGFSLYK 982 Query: 977 ELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTE 1036 ++L A+D+L+ G + ++S ++ L +P+L+P++++PDVN RL+ YKRI+S K++ Sbjct: 983 DMLAQAIDSLRDGPQMQSTTISS---DINLNIPALIPENYMPDVNLRLTMYKRISSTKSK 1039 Query: 1037 NELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVN 1096 E++ I+ ELIDRFG LP+ LL +A L+ QA LGI+K+ + + G F + + Sbjct: 1040 IEIKHIESELIDRFGELPEQTTNLLLMAHLKNQANTLGIKKIRMDRRYGRFYFDQSTTIE 1099 Query: 1097 PAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENAI 1147 +I L++++P +++ L F D RI V + L +++ Sbjct: 1100 AQNIIDLIEREPDVFKMYPDQSLGFKGDFPLVLDRINQVNTILGYLVGDSV 1150 >UniRef50_Q1GBP3 Transcription-repair coupling factor n=2 Tax=Lactobacillus delbrueckii subsp. bulgaricus RepID=Q1GBP3_LACDA Length = 1158 Score = 1114 bits (2881), Expect = 0.0, Method: Composition-based stats. Identities = 387/1134 (34%), Positives = 599/1134 (52%), Gaps = 20/1134 (1%) Query: 7 YTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM 66 + + LL + A A L+ + P++LI + A H+++S+ Sbjct: 16 FIAKTSRIKNSLLTGVERGAFAVLIQAYLAQVGQPLLLIEENEYKAQERHNDLSRLLADD 75 Query: 67 VMNLADWE-TLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHG 125 + L + L + D +SSR+ L L + + GV+I L + + Sbjct: 76 DLELFVLDGNLATQTAVSSPDELSSRIQCLNLLLSGRPGVVIATPQGLQYPLSAPALFKK 135 Query: 126 HALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFF 185 G ++ L L+ AGY + V++ GE+A RG ++DL+P+ E P RL+FF Sbjct: 136 GQKHFAVGDEIALPDLAQWLNQAGYHRENLVVKPGEFAMRGDIVDLYPLDRESPLRLEFF 195 Query: 186 DDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF--EVKRDPEH 243 DEID+++ FD+ SQR+LEE+ + A + ++ + E E Sbjct: 196 GDEIDTIKTFDLTSQRSLEELPEATVPAASDHVFTAEDLDRAGRELAGDLPKEAAASLEI 255 Query: 244 IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFP-ANTLLVNTGDLETSAERFQADTLAR 302 + ++ G LP + S+ L Y P LL N L + + Sbjct: 256 AQEALANGQLPDDCNRYLDYLLSKSF-SLLDYLPAKGLLLFNDWQLIAESVKNMGAINDD 314 Query: 303 FENRGVDPMRPLLPPQSLWLRVDELF-SELKNWPRVQLKTEHLPTKAANANLGFQKLPDL 361 + + + + Q L L D + ++ + V L + +L + Sbjct: 315 YLASQIAS-KMMTSRQKLRLDFDAVLKADCHHRLYVSLMAHSMGRLRFGQHLAWDSREPQ 373 Query: 362 AVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR 421 +Q + L + + VV V S + E I D + Sbjct: 374 QFFSQMELLKTELDSYAKK-GQTVVLQVSSRRQAEEFNRSCHDYDIYLPLAEA-DGLKEG 431 Query: 422 GRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQ 481 L+IG GFV +L + E +L + +R + +T+ +R+ EL G Sbjct: 432 RAQLVIGGYASGFVLPDSDLVYLTEKELFNQ--NKRSKKRIKTLENAQRLRSYTELKPGD 489 Query: 482 PVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541 VVH+ HG+GR+ G+ TLE G +Y+ +TY +L+VP L L+ +Y + Sbjct: 490 YVVHVNHGIGRFEGIQTLETDGKKRDYITITYQKGDQLFVPDDQLSLVQKYVASEGKQPH 549 Query: 542 LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFET 601 ++KLGG W++ +++ A +V D+A +L+++YA+R A++GFAF D F +FP+E Sbjct: 550 INKLGGSEWAKTKKRVAARVEDIADDLIELYAKREAEKGFAFSPDGSDQAAFEAAFPYEP 609 Query: 602 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLL 661 TPDQ +A + +DM + MDRL+ GDVGFGKTEVAMRAAF A+ + KQVA LVPTT+L Sbjct: 610 TPDQLRATAEIKADMEKAKPMDRLLVGDVGFGKTEVAMRAAFKAICDGKQVAFLVPTTIL 669 Query: 662 AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 721 AQQHY +DRF +PV I SRF+ E +I+A + +G ID+++GTH++L DV+ K Sbjct: 670 AQQHYQTIKDRFKGFPVEIASFSRFQGQAESKKIVAGLKDGSIDLVVGTHRILSKDVQLK 729 Query: 722 DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781 DLGLLI+DEE RFGV HKE++K ++ N+D+LTLTATPIPRTL+M+M G+RDLS++ TPP Sbjct: 730 DLGLLIIDEEQRFGVAHKEKLKQLKTNIDVLTLTATPIPRTLHMSMIGIRDLSVMETPPQ 789 Query: 782 RRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 841 R ++T+V E V+EA RE+ RGGQV+YL+N V +I++ RL +L+PEARIA Sbjct: 790 NRYPIQTYVLEQLPGTVKEACQREMQRGGQVFYLHNRVGDIEETVARLEQLLPEARIAYA 849 Query: 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901 HGQM E +LE +++ F + F++LV TTIIETGID+P NT+IIE ADH+GL+QL+QLRG Sbjct: 850 HGQMSENQLEDILSRFLDREFDILVTTTIIETGIDMPNVNTMIIEDADHYGLSQLYQLRG 909 Query: 902 RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961 R+GRS AYA+ L K +T +KRL+AI +LGAGF +A DL IRGAG +LG Sbjct: 910 RIGRSARLAYAYFLYQPNKVLTEVGEKRLDAIRDFTELGAGFKIAMRDLSIRGAGNMLGA 969 Query: 962 EQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVN 1021 +Q G ++++G+ LY ++L +A+ + + + EV+L + + +P+D+I D Sbjct: 970 QQHGFIDSVGYDLYSQMLADAIKERQGKK-----PVKKSNAEVDLGLEAYIPEDYIADQE 1024 Query: 1022 TRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGN 1081 ++ FYK+I + E+I+ EL+DRFG P LL++A L+ I L Sbjct: 1025 QKIEFYKKIKGIGSLQNREDIEDELLDRFGDYPAAVENLLNVASLKASCDLAQILTLVKE 1084 Query: 1082 EKGGVIEFAEKNHVNPA--WLIGLLQ--KQPQHYRLDGPTRLKFIQDLSERKTR 1131 + + F++ + L+ L RL L ++ TR Sbjct: 1085 KAQIRVIFSDSGSREMEGPNIFKALEHVSWKARIALGAQNRLVVTLLLPDKLTR 1138 >UniRef50_Q2LRR3 Transcription-repair coupling factor n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRR3_SYNAS Length = 1202 Score = 1113 bits (2880), Expect = 0.0, Method: Composition-based stats. Identities = 417/1197 (34%), Positives = 643/1197 (53%), Gaps = 63/1197 (5%) Query: 2 PEQYRYTLPVKAG-EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60 P ++ G E+ + L G+A A L+A ++E+ P+V+++P + A ++S Sbjct: 14 PVLRMLRERIEGGVERLSVNRLHGSANAFLIAALSEQLGRPLVVLSPTEKEARETFQDLS 73 Query: 61 QFTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCP 119 F V+ W+ D F+ +D+ R+ L +L T + V++ + LMQ+V P Sbjct: 74 LFLGSGKVLLYPPWDIQTTDMFALQRDVELVRMEVLARLLTDEPAVIVASLKALMQKVVP 133 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 S L + ++ G + RD L +L + GY+ + V + GE++ RG +LD+FP + P Sbjct: 134 RSILDAYLEILAPGSEVPRDELVAKLVAGGYQRMTLVEDKGEFSLRGHVLDIFPPLEDSP 193 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR 239 RL+F D+++SLR FD SQR+ EA L PA E + + R Sbjct: 194 LRLEFDGDDLESLRAFDPASQRSTGRREAFVLSPAREVILSEERRQRALQNIRYRAAALE 253 Query: 240 DPEHIYQQVSK----GTLPAGIEYWQPLFFSE-------------------PLPPLFSYF 276 P ++ ++S+ G + + PLF+ L F Y Sbjct: 254 LPRNVRDRLSETIDAGLSTSFNPLFLPLFYESLAPTSPDSPTENATATQAVRLGTFFDYL 313 Query: 277 PANTLLVNTGD--LETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW 334 P N +V +E + ER + + R + + L ++ ++ D +L+ + Sbjct: 314 PGNCFVVLDDALAIENAGERIENEI-DRCLLKAEREGKFYLEREASYVTKDAFIKDLRRF 372 Query: 335 PRVQLKTEHLPTKAANANLGFQKLPDLAV-------------------QAQQKAPLDALR 375 R+ L+ L A+ +K ++ L L Sbjct: 373 QRMILEGLALGRLTEYASGNGEKTQASQYESLPLPLATDPELGDLHRGPGGEETLLAPLV 432 Query: 376 KFLETF---DGPVVFSVESEGRREALGELLARIKIAPQR------IMRLDEASDRGRYLM 426 + + + V F + + + LL ++ + + L Sbjct: 433 EHIRRWLQEGMLVAFLCSGKEDLQRMRHLLGNYELPVRTPEGSLISEAFLHSGPGVLSLR 492 Query: 427 IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 G F+ LA I E +L G+++ RR S R +R+ +L G VVH Sbjct: 493 EGRLSRSFLFPDLKLAAISEEELFGKKITGRRIRSAR---EGYFLRSFGDLKEGDYVVHK 549 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLG 546 EHG+G Y G+ L GGI ++L++ Y + KLY+P+ L ISRY G + KLG Sbjct: 550 EHGIGLYQGLQKLSVGGIENDFLLINYQSGDKLYLPIDRLDQISRYIGPEGYVPKVDKLG 609 Query: 547 GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606 G +W R++ + +++VA EL+ IYA R E +F Y+ F +FP++ TPDQA Sbjct: 610 GTSWDTVRERVKKSIQEVAEELVAIYAAREVMERRSFAPPDAVYEEFSAAFPYDETPDQA 669 Query: 607 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 666 +AI + +DM MDRL+CGD GFGKTEVAMR+AF + +Q AVLVPTT+LA+QH Sbjct: 670 RAIEDIHADMNSAKPMDRLICGDAGFGKTEVAMRSAFRTAMDGRQTAVLVPTTILAEQHC 729 Query: 667 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 F R ++P+RIE ++RF+S EQ+ +L + +G++DI+IGTH+LLQ DV FK+LGL+ Sbjct: 730 QTFSSRMKDYPIRIEALNRFKSKAEQSSVLEGLRKGQVDIVIGTHRLLQKDVTFKNLGLV 789 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 IVDEE RFGV HKE++K +R VD+LTLTATPIPRTL++++ G+RDLSII TPP R + Sbjct: 790 IVDEEQRFGVAHKEKLKKLRTLVDVLTLTATPIPRTLHLSLVGIRDLSIINTPPEDRQTI 849 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 KT+V E++ +REAI RE+ R GQV++L++ V +I A + +LVPEA I + HGQM+ Sbjct: 850 KTYVLEFNEETIREAIRRELARNGQVFFLHDRVRSIYTMARLVEKLVPEADIGVVHGQMK 909 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 RE+E VM F + NVLVCTTII +G+DIPTANTI++ RAD FGLAQL+Q+RGRVGRS Sbjct: 910 PREIEDVMGRFLRKECNVLVCTTIIGSGLDIPTANTILVNRADRFGLAQLYQIRGRVGRS 969 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 +AYA+LL P ++ DAQKRL+ I + G+GF +A+ D+EIRG G LLG QSG Sbjct: 970 SEEAYAYLLVPKGVLLSRDAQKRLQVIMDFSEPGSGFRIASSDMEIRGGGNLLGTSQSGH 1029 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026 + +G+ LY EL+E + +K P E + E+ L +P+ +P++++ DV+ RL Sbjct: 1030 VSAVGYELYTELMEQTIREIKGETIPEEEIV----PEINLGLPAFIPEEYMADVHRRLVT 1085 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGV 1086 YKRI+ A + ELEEI+ EL D FG LP LL++ RLR + + + ++K+ + K Sbjct: 1086 YKRISMADSNEELEEIRDELADCFGYLPPEVTNLLEVIRLRNRLKAIRVKKMGYDTKQMF 1145 Query: 1087 IEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELE 1143 + F+ V P ++ L +K+ + RL ++ + +E + +R L Sbjct: 1146 LFFSADTPVEPERILSLARKKLKGLRLTPDCKIYIPMPGLKGSEILEKAGEVLRLLS 1202 >UniRef50_A5UZG2 Transcription-repair coupling factor n=2 Tax=Roseiflexus RepID=A5UZG2_ROSS1 Length = 1265 Score = 1109 bits (2870), Expect = 0.0, Method: Composition-based stats. Identities = 459/1207 (38%), Positives = 630/1207 (52%), Gaps = 105/1207 (8%) Query: 8 TLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QM 66 TL G + + GAA LVA + P++ + ALR H+++ Q+ Sbjct: 25 TLHAHRGARLHIAPTPGAARTPLVAAFTLQGVAPLLYLVGTTDAALRAHEDLRQWIGTDR 84 Query: 67 VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ-------RGVLIVPVNTLMQRVCP 119 V + LPY+ S DI+++RL L++L V++ PV LMQ Sbjct: 85 VFLFPASDALPYEHMSTGADILTARLRVLHRLAAFNAGDVDVAPFVIVAPVKALMQPSLT 144 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 L ++ +++G + D L +L + GYR+ V E GE RG ++D+F G +LP Sbjct: 145 PDELRDASVRLERGMAYALDDLIERLIAMGYRYAPTVEEPGEVNRRGGIIDVFSPGDDLP 204 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRD----TF 235 R++FF DEIDSLR FD +QR+ ++ A + P HEFP + + L R + D Sbjct: 205 LRIEFFGDEIDSLRRFDPLTQRSEAQIRAAIIGPPHEFPLWRRDVALERMRAIDTSMLRH 264 Query: 236 EVKRDPEHIYQQVSKGTLPAGIEYWQPLFF--SEPLPPLFSYFPANTLLVNTGDLETSAE 293 E + + + G G + P F + L + P +V + L + Sbjct: 265 EALDEWLQAFDHIRNGERFEGRALFAPFFRDNPQAPGTLLHHLPPGAPVVLSEALLLAQH 324 Query: 294 RFQADTLAR-FENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN 352 + D A + +D +LR EL + + V L P + Sbjct: 325 ATELDQQAETRRRQQIDAGELPAAFPRPYLRWHELMALAEAHTLVNLSNNEHPFWDVLLS 384 Query: 353 LGFQKLPDLA---------------------------------------VQAQQKAPLDA 373 P + Q + +D Sbjct: 385 DPAPLPPSFSFGEQNGNPAPLTDTRNVHPSEDRFRVHLLPERLFAPAELFGGQIRRLVDD 444 Query: 374 LRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHG 433 + + L + V+ + + L EL+ + E G ++ G + G Sbjct: 445 VVERLRAGERVVLITP----QAARLQELVTE--ALQRDASDGVENVVSGLTVLHGTLDEG 498 Query: 434 FVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRN--LAELHIGQPVVHLEHGVG 491 F NL L ++++ G R R D RR + R L L G VVH+EHG+ Sbjct: 499 FRMPALNLTLYSDTEIFGWRQRRIIADRRRRHDRRAEDRAAFLRGLKPGDYVVHIEHGIA 558 Query: 492 RYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWS 551 Y G+ GGI +YL L YA +LYVPV + +SRY G + L +LG W Sbjct: 559 VYEGLIRRSVGGIERDYLNLRYAEGDRLYVPVDQIDRVSRYIGAGDVEPQLTRLGTQDWE 618 Query: 552 RARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINA 611 RA++KA V+D+A EL+ +YAQR EG AF D E + SFP+ TPDQ +AI Sbjct: 619 RAKRKARAAVQDLAEELITLYAQRQLAEGHAFSPDTEWQRELEASFPYVETPDQLKAIID 678 Query: 612 VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRD 671 V DM QP MDRLVCGDVGFGKTEVA+RAAF AV + KQVAVL PTT+L QQHYD F Sbjct: 679 VKRDMEQPQPMDRLVCGDVGFGKTEVALRAAFKAVQDGKQVAVLAPTTVLVQQHYDTFSR 738 Query: 672 RFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEE 731 R A +PVRI+MISRFRSAKEQ++I+ +A G+IDI+IGTH+LL DV FKDLGLL++DEE Sbjct: 739 RMAAFPVRIDMISRFRSAKEQSEIVQRLARGEIDIIIGTHRLLSKDVVFKDLGLLVIDEE 798 Query: 732 HRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVR 791 RFGVRHKERIK +R NVD+LTLTATPIPRTL+MA++G+RDLSII TPP R+ +KT+V Sbjct: 799 QRFGVRHKERIKQLRTNVDVLTLTATPIPRTLHMALAGIRDLSIIDTPPEDRIPIKTYVL 858 Query: 792 EYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELE 851 YD ++REAILRE+ RGGQVY+++N V++I A+RL LVPEARIA+GHGQ+ E +LE Sbjct: 859 PYDERLIREAILRELDRGGQVYFVHNRVQSIYYVADRLRRLVPEARIAVGHGQLEEHQLE 918 Query: 852 RVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAY 911 RVM DF R +VLVCTTIIE+G+D+P ANTIII+ A +FGLAQL+QLRGRVGRS +AY Sbjct: 919 RVMLDFFTGRDDVLVCTTIIESGLDVPNANTIIIDDATNFGLAQLYQLRGRVGRSTQRAY 978 Query: 912 AWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIG 971 A+L + T +AQ+RL AI +LGAGF +A DLEIRGAG LLG EQSG + +G Sbjct: 979 AYLFYKSERPSTPEAQERLRAIQEATELGAGFRIAMRDLEIRGAGNLLGAEQSGHIAAVG 1038 Query: 972 FSLYMELLENAVDALKAGR----------------------------------------- 990 F LY LLE AV LK Sbjct: 1039 FDLYSRLLEQAVRTLKQRLIATNFITGTDAMRTSPGAPAQPSDGQTPPPARSSVPSRRPA 1098 Query: 991 -EPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDR 1049 + L S ++L + + LP D+IPD RL+ Y+R+A A+T + +++ EL DR Sbjct: 1099 VRVDEKVLISPLVTLDLPLDAYLPVDYIPDDRVRLAVYQRMAEAQTPEAVRDLRQELRDR 1158 Query: 1050 FGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQ 1109 FG LP+PA LL R++ A G+ + + +I E N + L + + Sbjct: 1159 FGELPEPADQLLIWLRIKALALAAGVTSVVTTDAEFIIRLPEGNDQARSRLERRFAR-AR 1217 Query: 1110 HYRLDGP 1116 R+ Sbjct: 1218 GIRIGPQ 1224 >UniRef50_C4G278 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G278_ABIDE Length = 1184 Score = 1109 bits (2869), Expect = 0.0, Method: Composition-based stats. Identities = 394/1169 (33%), Positives = 611/1169 (52%), Gaps = 36/1169 (3%) Query: 1 MPEQYRYTLPVKAGE-QRLLGELTGAACATLVAEIAE-RHAGPVVLIAPDMQNALRLHDE 58 + E + G+ L+ A + ++ +++ V+I D A + + Sbjct: 11 LKEINEAINHINKGKLPILITGCMDAEKSNIIETLSKGTSKRHRVIITYDEIRAGEIQTD 70 Query: 59 ISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVC 118 + + D+ + + + + + IIS RL L +L + +I+ + + RV Sbjct: 71 MKLY-DKKAVIYPAKDIMFFAADVHGNAIISGRLEVLKRLIEDKPSTIILSLEAGLDRVL 129 Query: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL 178 P S++ + + L +L GY QV G++A RG + D+FP+ E Sbjct: 130 PLSYVKEKIVKLSVRDSFDITELARRLSELGYEKTSQVSGKGQFAVRGDIFDIFPLTEET 189 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAA--------------- 223 P+RL+F+ DEID++R FDV+SQR++E VE + + PA E D+ Sbjct: 190 PFRLEFWGDEIDTIRAFDVESQRSIENVEELLVYPATEIIIDEERKLAGLKKLNKEKEEV 249 Query: 224 IELFRSQWRDTFEVKRDP--EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL 281 + FR++ + + + E + GI+ + FF E F YF + Sbjct: 250 YKKFRAEMKTEEAARINSVVEEFKDNLEIYGGSFGIDSYINYFFDE-TETFFDYFNEEDI 308 Query: 282 LVNTG--DLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL 339 +E + + NR ++W ++ ++L++ V L Sbjct: 309 FFIDEPIRIEEKGKAVSFEWRESMTNRLTKGYILSKQADTIW-DYKKVLAKLESKSTVLL 367 Query: 340 KTEHL--PTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREA 397 A + + L ++ + VV S+ R E Sbjct: 368 SLLETRTGDIKAKQRFDVLSRNVNPYNNSFETLIKDLTRY-KKEGYKVVVVSSSKVRAER 426 Query: 398 LGELLARIKIAPQRIMRLDEASDRGRYLMI-GAAEHGFVDTVRNLALICESDLLGERVAR 456 L E ++ + + G + I G GF A+I ESD+ G + Sbjct: 427 LAEDFRERELMANYLSTDERVPVSGEVVTIQGNLRRGFEYPSIKFAIISESDIFGAEKKK 486 Query: 457 RRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAND 516 + ++ I + +ELH G V+H HG+G Y G+ G+T +Y+ + Y+ D Sbjct: 487 TNRKKKKID--GASIASFSELHEGDYVIHENHGIGVYRGIEQFTVEGVTKDYVKVDYSGD 544 Query: 517 AKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRA 576 ++VP ++L ++ +Y+ + K+GG AW + + K + + ++A +L+++YA+R Sbjct: 545 VSIFVPTTNLDVLQKYSSANGAKPKIDKIGGQAWKKTKSKVRQSISEIARDLVELYAKRQ 604 Query: 577 AKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTE 636 ++GF + D Q F + FP++ T DQ AI V +DM MDRLVCGDVGFGKTE Sbjct: 605 QEQGFRYGKDTVWQQEFEEMFPYDETDDQLNAIKDVKADMESIKIMDRLVCGDVGFGKTE 664 Query: 637 VAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQIL 696 VA+RAAF AV KQV +LVPTT+LA QHY F R N+P+ +E +SRF+SA E +I Sbjct: 665 VAIRAAFKAVSEGKQVVMLVPTTILAGQHYTTFSKRMQNFPITVEFLSRFKSAAETKKIK 724 Query: 697 AEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTA 756 ++ G IDI+IGTHK+L +++K+KDLGLLI+DEE RFGV HKE+IK +R NVD+LTL+A Sbjct: 725 EKLKAGLIDIVIGTHKVLSAEIKYKDLGLLIIDEEQRFGVSHKEKIKKLRENVDVLTLSA 784 Query: 757 TPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLY 816 TPIPRTL+M++ G+RD+S++ PP R+ ++T+V E+D ++REAI REI R GQVYY+Y Sbjct: 785 TPIPRTLHMSLVGIRDMSVLEEPPVDRIPIQTYVLEHDDEIIREAINREIGRNGQVYYVY 844 Query: 817 NDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 876 N V I + A +LAEL+P AR++ HGQM ERELER+M +F + +VLV TTIIETG+D Sbjct: 845 NRVSGIDERAAKLAELIPGARVSFAHGQMNERELERIMIEFINGEIDVLVSTTIIETGLD 904 Query: 877 IPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASL 936 I NTIII+ AD GL+QL+QLRGRVGRS ++A+L+ + + A+KRL AI Sbjct: 905 ISNVNTIIIDDADKMGLSQLYQLRGRVGRSSRTSFAFLMYKRDRMLKEIAEKRLAAIKEF 964 Query: 937 EDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLED 996 DLG+GF +A DLEIRGAG LLG+ QSG ME +G+ LY ++L V LK + + E Sbjct: 965 TDLGSGFKIAMKDLEIRGAGNLLGKSQSGHMEAVGYDLYCKMLNEEVKRLKGEKVAADE- 1023 Query: 997 LTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDP 1056 +T V++ + +P D+I + RL YKRIA TE EL E+K ELIDR+G +P Sbjct: 1024 ---FETAVDIEASAYIPADYIRNEVARLEMYKRIAGIFTEEELSELKDELIDRYGEMPLA 1080 Query: 1057 ARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGP 1116 L++I+ +RQ A ++G K+E + + + + ++ RL Sbjct: 1081 VDNLVNISFIRQMAHEIGTTKVECKGETARFSIYNEVKFDIDKISEVMADNEGRLRLRSG 1140 Query: 1117 TRLKFIQDLSER--KTRIEWVRQFMRELE 1143 F + KT+ E + + L Sbjct: 1141 KETYFEYKFGDGTHKTKAEDKIKLLISLT 1169 >UniRef50_C0QJ97 Mfd n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ97_DESAH Length = 1165 Score = 1108 bits (2865), Expect = 0.0, Method: Composition-based stats. Identities = 396/1160 (34%), Positives = 647/1160 (55%), Gaps = 38/1160 (3%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD---QMVM 68 K L + G+ A + A++ + +V++ PD + A+ DE+ + + V+ Sbjct: 11 KRDTSIDLTGVHGSGSAYITAKLFASNDCSLVVVLPDRKRAMAFMDELEFYLPKGKRRVI 70 Query: 69 NLADWETLPYDSFSPHQDIISSRLSTLYQLPTM-QRGVLIVPVNTLMQRVCPHSFLHGHA 127 + LP+ + S H + S R++ LY+L + + +++ V+TL+ ++ P L A Sbjct: 71 YFPGYNILPFKALSFHSETASKRIAALYKLLSRREHHLIVTHVDTLLLKMIPRKRLADAA 130 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 ++ + + RD L +L++ GY V E G+Y+ RG +LD+F + P R++ F D Sbjct: 131 DLVINNEEIDRDLLVARLNAGGYIRTSLVEEPGDYSVRGGILDVFSPSATFPVRIELFGD 190 Query: 188 EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIY-- 245 ++SLR F +QR +++++ I ++PA+E D A + + R + Sbjct: 191 YVESLRFFSPITQRGIKDIQEIEIVPANEAVIDPAELPEILGRLRKAGADAGVDPVVIRG 250 Query: 246 --QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQADTLA 301 ++ + G+E + + E L Y P + L + N D+E A F+ Sbjct: 251 HVDKIREEGRFPGMEGMLSIVYPE-LDSFMDYVPDHALFLLENPLDIEAGATAFEQKARQ 309 Query: 302 RFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRV---QLKTEHLPTKAANANLGFQKL 358 + + R + P+SL++ ++ S L V +L + T +A + Sbjct: 310 NY-TSALAENRLSVTPESLYIEWSQVKSRLFEKKPVCFKRLTMDRRETDSAAFSFDISDN 368 Query: 359 PDLAV----QAQQKAPLDALRKF---LETFDGPVVFSVESEGRREALGELLARIKIAPQR 411 L+ + + +A L + + V S + + L +L + P Sbjct: 369 TFLSSTLKGEGKTEALFQPLADWFLDKKNDGSRAVAVCSSTTQSQRLVAILRPYGVEPTF 428 Query: 412 IMRLDEAS--DRGRYLMIG----AAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTI 465 + +E G Y + G GFV + +AL+ ++ G A+RR+ + T Sbjct: 429 LKGFEEVENQKPGIYCIPGYASGNLTRGFVFPEQGIALVTNQEIFG---AKRRRSAGGTK 485 Query: 466 NPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSS 525 + EL G VVHLEHG+GRY G+ TL+ GI+G+++++++ +D +LY+PV Sbjct: 486 RAKSQFITPEELKEGDIVVHLEHGLGRYEGLVTLKLEGISGDFILISFRDDDRLYLPVDR 545 Query: 526 LHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKH 585 + ++ +Y G + L K+GG W ++R KA ++V +A ELL +YA+R +GFAF Sbjct: 546 MEMVEKYIGVDGYSPILDKIGGKTWQKSRAKAKKEVEKMAGELLKLYAERRVAKGFAFSR 605 Query: 586 DREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA 645 + F SFPFE TPDQ +AI+ VL DM MDRLVCGDVG+GKTEVA+RA F A Sbjct: 606 PDHFFNDFEASFPFEETPDQLKAIDDVLVDMESERPMDRLVCGDVGYGKTEVAIRATFKA 665 Query: 646 VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID 705 V + KQVA++VPTT+LA+QH FR+RF N+P+ +E +SRFR+ EQ +I+ ++ +GK+D Sbjct: 666 VTDGKQVAIVVPTTILAEQHVHTFRERFGNYPITVESLSRFRTKGEQAKIVKDLEQGKLD 725 Query: 706 ILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNM 765 ++IGTH+LLQ D+ FK LGLL++DEE RFGV+HKE +K R++VD+L LTATPIPRTL+M Sbjct: 726 VVIGTHRLLQKDIAFKSLGLLVIDEEQRFGVKHKEALKKRRSSVDVLALTATPIPRTLHM 785 Query: 766 AMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKA 825 +++GMRD+SII+TPP R + +++ EYD + AI +E+ RGGQ+++++N+++ I K Sbjct: 786 SLTGMRDISIISTPPVDRQPIVSYISEYDDAIAAGAIQKELERGGQIFFIHNNIKTIFKT 845 Query: 826 AERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 885 AE L +LVPE RIA+ HG++ E LE+ M F ++ ++LVCTTI+E+G+DIP+ANT+II Sbjct: 846 AENLKKLVPEVRIAVAHGRLNEASLEKAMLQFINREIDMLVCTTIVESGLDIPSANTMII 905 Query: 886 ERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFAL 945 RAD FGLAQ++QLRGR+GR QAYA+L P +T DAQKRL A+ DLG+GF + Sbjct: 906 NRADMFGLAQIYQLRGRIGRGEEQAYAYLFVPEEHRLTRDAQKRLAALMEHRDLGSGFQI 965 Query: 946 ATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVE 1005 A DL+IRGAG LG QSG + +G+ ++++LL+ AV LK + E+ Sbjct: 966 AMKDLQIRGAGSALGGSQSGHVAAVGYDMFLKLLDEAVADLKGQPLTDP-----LEPEIN 1020 Query: 1006 LRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIAR 1065 + + + + D+++ + RL+ Y+R++ T E+ ++ EL+DRFG LP+ A +L Sbjct: 1021 VTLSTFISDEYVQSIEQRLTIYRRLSQMTTVKEVAAMQQELVDRFGKLPEEAGNMLLKIM 1080 Query: 1066 LRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQ-- 1123 LR K G++KL+ + F+ + P L G + + L+F Sbjct: 1081 LRVLCVKAGVKKLDLTNTSLTLVFSAVHQRRPQALAGGVSMINAAHEFTAENTLRFSIGG 1140 Query: 1124 DLSERKTRIEWVRQFMRELE 1143 + ++ ++ + Sbjct: 1141 KFKPVTRALGEAKKILQVIA 1160 >UniRef50_A9WHG9 Transcription-repair coupling factor n=3 Tax=Chloroflexus RepID=A9WHG9_CHLAA Length = 1185 Score = 1106 bits (2861), Expect = 0.0, Method: Composition-based stats. Identities = 440/1133 (38%), Positives = 620/1133 (54%), Gaps = 51/1133 (4%) Query: 41 PVVLIAPDMQNALRLHDEISQFTD-QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLP 99 P + I ++ALR D++ Q+ V + LPY+ SP +D+++ RL+ L L Sbjct: 64 PTLYITLSAESALRAADDLRQWLGSDQVWLFPPADALPYEQMSPGRDVLARRLAVLRGLQ 123 Query: 100 TMQ-RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVME 158 T GV++ V LMQ P S L + +++G ++S + L GY+ V V E Sbjct: 124 TGSFSGVIVTSVKALMQPTLPPSDLANATIRLQRGMQVSIEETVVTLLDNGYQRVAMVEE 183 Query: 159 HGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFP 218 GE + RGA+LD++P G ELP R+++FDDEIDSLR FD +QR+ + +E ++ P HE P Sbjct: 184 PGELSRRGAILDVWPPGDELPLRIEWFDDEIDSLRRFDPATQRSEQRLERADIGPPHEIP 243 Query: 219 TDKAAIELFRSQWRD----TFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFS 274 + L R D EV+ + +Q++ G G ++ P F+ + L Sbjct: 244 FWRRDEALRRIDALDMSQLRREVRDEWAVAREQLAGGQRFEGRAFYAPFFY-DQTATLLD 302 Query: 275 YFPANTLLVNTGDLETSAERFQADTLAR-FENRGVDPMRPLLPPQSLWLRVDELF-SELK 332 Y P +++ + + D A + ++ + +LR EL E Sbjct: 303 YLPPQSMVALAEGHLLAQHADEIDVQAAGYRDQLLALGELPPDFPRPYLRWSELHLKESA 362 Query: 333 NWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESE 392 V L P + G L Q + +D + + + + V + Sbjct: 363 KLVVVDLSHNEYPDALPPLSFGVPPL----YGGQLRRLIDTVVEQVRGGELVVAVTA--- 415 Query: 393 GRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGE 452 + L EL+ E + G E GF +L L+ +S++ G Sbjct: 416 -QAARLQELVGER--------LAQETVSGRFVPIHGGLEAGFTLADLHLTLLTDSEIFGV 466 Query: 453 RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLT 512 R R + RR L L G VVH+EHG+ + GM + EYL+L Sbjct: 467 RQRRPLAERRRKTGTTDRAAFLRTLKPGDYVVHIEHGIAIFDGMIRRTVSEVEREYLVLR 526 Query: 513 YANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIY 572 YA + K+YVPV + ++RY G + L +LG W R ++K V+D+A ELL +Y Sbjct: 527 YAGEDKIYVPVDQIDRVTRYIGAGDGPPTLTRLGTQDWERTKRKVRAAVQDLAEELLRLY 586 Query: 573 AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632 AQR K G+AF D E + SFP+ T DQ +AI V +DM +P MDRLVCGDVGF Sbjct: 587 AQRQLKSGYAFSPDNEWQRELEASFPYLETDDQLRAIAEVKADMEKPTPMDRLVCGDVGF 646 Query: 633 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ 692 GKTEVA+RAAF AV + KQVA+LVPTT+LAQQH+D FR R A +PV +EM+SRFRS KEQ Sbjct: 647 GKTEVALRAAFKAVQDGKQVAILVPTTVLAQQHFDTFRKRMAAFPVTVEMLSRFRSPKEQ 706 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 I+ ++A GKIDI+IGTH+LL +DV F++LGL+I+DEE RFGVRHKER+K MR VD+L Sbjct: 707 DAIIRDLARGKIDIIIGTHRLLSNDVVFRNLGLVIIDEEQRFGVRHKERLKLMRTEVDVL 766 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 TLTATPIPRTL+MA++G+RDLS+I TPP R+ +KT+V D +++E I RE+ R GQV Sbjct: 767 TLTATPIPRTLHMALAGIRDLSVIDTPPEDRIPIKTYVVPTDDHLIQEVIRRELEREGQV 826 Query: 813 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 Y ++N V++I AERL LVPEARIA+GHGQ+ ERELE+VM DF R++VLVCTTIIE Sbjct: 827 YVVHNRVQSIYHVAERLRRLVPEARIAVGHGQLAERELEQVMIDFFEGRYDVLVCTTIIE 886 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 +G+D+P ANTIII+ A ++GLAQL+QLRGRVGR +AYA+LL + MT DA+ RLEA Sbjct: 887 SGLDVPNANTIIIDDATNYGLAQLYQLRGRVGRGATRAYAYLLYNAARVMTNDARLRLEA 946 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP 992 I +LGAGF +A DLEIRGAG LLG EQSG + +GF LY LLE AV LK + Sbjct: 947 IQEATELGAGFRIAMRDLEIRGAGNLLGAEQSGHIAAVGFDLYSRLLEQAVRKLKQDVDE 1006 Query: 993 SLEDLTS------------------------QQTEVELRMPSLLPDDFIPDVNTRLSFYK 1028 E T ++L + + LP D+I D RL+ Y+ Sbjct: 1007 LAETATDSSVTPAVMAESLRAPNVSERVLVAPLVTIDLPLTAYLPPDYISDETVRLAVYQ 1066 Query: 1029 RIASAKTENELEEIKVELIDRF-GLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVI 1087 R+ A T +E+ ++ ELIDRF G LP+P L+ ++R A + G+ + I Sbjct: 1067 RMVDATTLDEVRGLRQELIDRFGGPLPEPVLHLILWLQIRLLALQAGVASITTEGDVFFI 1126 Query: 1088 EFAEKNHVNPAWLIGLLQKQPQHYRLDGPT-RLKFIQDLSERKTRIEWVRQFM 1139 + + + + RL S+ R+ V + + Sbjct: 1127 RLSTPLAAGVRERLRRRFPRDAAIAFGPQSIRLDRRLLGSQWPERLLAVVELL 1179 >UniRef50_C4GD25 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GD25_9FIRM Length = 1185 Score = 1104 bits (2857), Expect = 0.0, Method: Composition-based stats. Identities = 390/1166 (33%), Positives = 605/1166 (51%), Gaps = 41/1166 (3%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLA 71 G + A A L+ + + +++ D + A +L +E+ FT + V Sbjct: 27 DGGAFYAVLGCIDPAKAQLIYGLGAGYLVR-LVVTRDEKRARQLAEELEFFT-ENVFYYP 84 Query: 72 DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 + L Y S + R+ + L + V++ + LM ++ P S + + + Sbjct: 85 AKDLLFYQSDIRSNVLTRQRMQAVEALRGKEETVIVTTWSALMNKLPPLSSYDKNIIEVA 144 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 +G + + R L +GY V +V GE+A RG ++D+FP+ P R++ + DE+D+ Sbjct: 145 QGDDMPVEKWRLALIGSGYEPVARVEHPGEFAVRGGIIDVFPLTDANPIRIELWGDEVDT 204 Query: 192 LRVFDVDSQRTL---EEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE------------ 236 +R+FD DSQ +L + ++ I ++P+ E + R + Sbjct: 205 MRLFDPDSQLSLSDEDPLQTIRIVPSAEIVLSPEELRRGLEGIRADADRVCAGYRESFKT 264 Query: 237 -----VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETS 291 +K + I + V G +E F + L L Y P + ++ G E Sbjct: 265 EEAARIKAAADQIIEDVEGGFGSQQVESHLTYFTDQTL-SLIDYIPEDGVIFLDGFQELM 323 Query: 292 AE-RFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTK--A 348 A + + + R ++ L + + L ++L+ V L + Sbjct: 324 ASGKVIMEEFSDSMTRRLEEGYILPGQMQMLYDNESLTAKLRGRRGVLLSALEGRDQGLE 383 Query: 349 ANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIA 408 + + + L LR++ + V S R L + L + + Sbjct: 384 VREHFHIRIRQGSVYNNSYELLLKDLREYKKNRRKLVYV-GNSRTRARRLADDLLQENLN 442 Query: 409 PQRIMRLD-EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINP 467 + E + + G+ G+ T L+ E DL G R+R+ R Sbjct: 443 VFYTEDPEHEVKEAEIMVTRGSLSAGYELTDAGFVLLTEEDLFG--GRRKRRKRGRRHRE 500 Query: 468 DTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLH 527 I + A+LH G V+H HG+G Y GM +E +T +Y+ + YA+ LY+ S + Sbjct: 501 GEAIASFAQLHEGDYVIHENHGLGIYRGMEKIEVDQVTKDYIKIEYADSGILYILASQMD 560 Query: 528 LISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 587 L+ +YAG L+ LG WSR + + V VA EL+++YA R +G+A+ D Sbjct: 561 LLQKYAGADARRPRLNSLGSQEWSRTKSRVKRAVESVARELVELYAVRQEDKGYAYGPDT 620 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 + F ++FP+E T Q +AI AV DM P MDRL+CGDVGFGKTE+A+RAAF A Sbjct: 621 VWQREFEEAFPYEETEGQLEAIEAVKKDMESPKIMDRLICGDVGFGKTEIALRAAFKAAQ 680 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 KQV LVPTT+LAQQHYD F R A +P+++ ++ RFR+ +Q Q ++E+A G++DI+ Sbjct: 681 EGKQVVYLVPTTILAQQHYDTFVQRMAPYPIKVGLLCRFRNKTQQAQTVSELASGRVDIV 740 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 IGTH+ L DV F+DLGLLI+DEE RFGVRHKE+IK M+ NVD+L+L+ATPIPRTL+M++ Sbjct: 741 IGTHRALSRDVVFRDLGLLIIDEEQRFGVRHKEKIKQMKKNVDVLSLSATPIPRTLHMSL 800 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 G+RD+SI+ P R ++TFV E++ ++REA+LRE+ RGGQ+YY++N V I Sbjct: 801 VGIRDMSILDEAPMERTPIQTFVFEHNDEMIREAVLREMARGGQIYYVFNRVAQIADMTA 860 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 RL +L+PEA +A HG+M + LE +M DF ++LV TTIIE G+DI NTIII+ Sbjct: 861 RLQKLLPEAHVAYAHGRMSQTRLENIMVDFIDGEIDLLVSTTIIEIGLDISNVNTIIIDD 920 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 AD+ GL+QL+QLRGRVGRS+ AYA+ + K + A+KRL AI DLG+GF +A Sbjct: 921 ADNMGLSQLYQLRGRVGRSNRTAYAFFMYRRGKLLKEVAEKRLLAIKEFSDLGSGFKIAM 980 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR 1007 DLEIRGAG +LGE QSG ME++G+ LY ++L AV K E +T V+L Sbjct: 981 RDLEIRGAGNVLGESQSGHMESVGYDLYCKMLGEAVRQEKGE-----EIYEPFETSVDLD 1035 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 M + LP+ ++ D R+ YKRIA ++E + + + ELIDRFG + LL IA + Sbjct: 1036 MDAYLPESYVADAGQRMEIYKRIADIRSEEDHDAMLEELIDRFGEPARAVQNLLWIALFK 1095 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTR-----LKFI 1122 +A + IR + + + +NPA + L+ + + + L F Sbjct: 1096 ARAHRAWIRDIRQKGWQVSLTLFHQAPINPAVIPQLISRYSPYLHFTADPQEPRLELDFG 1155 Query: 1123 QDLSERKTRI-EWVRQFMRELEENAI 1147 ++ K +I E +R F+ E E A+ Sbjct: 1156 RNSRMEKRQIPEALRSFVEEFRELAV 1181 >UniRef50_B0S0H3 Transcription-repair coupling factor n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S0H3_FINM2 Length = 1168 Score = 1103 bits (2853), Expect = 0.0, Method: Composition-based stats. Identities = 366/1162 (31%), Positives = 639/1162 (54%), Gaps = 32/1162 (2%) Query: 3 EQYRYTLPVKAGEQRL-LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 E Y + A + + + A A+ V ++ P+V++ D A L + ++ Sbjct: 13 EFQGYLDSLSANNSSIYIHGVIKEAFASFVYATSKNINKPLVVVVEDNMRARNLTEYLND 72 Query: 62 FTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 + + E Y++ S + R++ L++L ++ +++ + L +++ S Sbjct: 73 IEENICEFFPSRELNFYNAKSLDDNAEDQRVNVLFKLLNNEKFIIVTTFDALTKKITKKS 132 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 +A +K ++ + L+ +L + Y VD + G++A RG ++D+FP+ S P R Sbjct: 133 VAKKYAFTIKDTDLINLEELQEKLRALKYERVDTIESKGQFAIRGGIVDIFPVHSRFPVR 192 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE----- 236 ++ FDDEIDS+R F+V +QR++E+ + ++++ E + + E + + + Sbjct: 193 IELFDDEIDSMRFFEVSTQRSIEDCKFVDIISCSELIIEDSKKESIINSIQKNLDKRVDH 252 Query: 237 ---------VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGD 287 VK E + + + I+ + +F YF +T+++ D Sbjct: 253 PIFGENVDNVKDKFEKLMEYIRSDLEYE-IDLVSCFLTKKDYDTVFDYFADDTIMM-IED 310 Query: 288 LETSAERFQADTLARFEN--RGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLP 345 L + ++ E+ V+ L + + + ++ +K V + + Sbjct: 311 LSRCYDIYKEKEKRFLEDFVYLVEKGEVLSKHEQSLIPISDILKFIKAKTSVNITSLVKR 370 Query: 346 TKAANANLGFQ--KLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLA 403 T+ +N +Q L + ++ ++ +VF+ E R+ L +L Sbjct: 371 TRLIESNAMYQLKTLEAPNFNKNIDSLVENIKSNSLRGFKQIVFAANVE-RKNMLKDLFL 429 Query: 404 RIKIAPQRIMRLDE-ASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR 462 I + + +GF +I ++ G ++ + + Sbjct: 430 TNGIPTLEAEDYNANIKSSQVLITQKNLPNGFEIKDPKYLIITYKEIFGRE--KQLRKRK 487 Query: 463 RTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVP 522 + + I N ++L+I VVH HG+G+Y G+ ++ GI +Y+++ Y + +L +P Sbjct: 488 KKKSTGQDIVNYSDLNIDDYVVHENHGIGQYKGIEKIDVNGIQKDYIVIQYKANDRLMIP 547 Query: 523 VSSLHLISRYAGGAE-ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGF 581 ++L+ +Y GG + L+KL G+ W++A+QKA + V ++A +L+++Y++RA +G+ Sbjct: 548 TDQMNLVQKYIGGGNVKKPSLNKLSGNDWAKAKQKAKKSVDEMADDLVELYSKRAKLKGY 607 Query: 582 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 641 F D E + F DSFP+E T Q ++I + +DM MDRL+CGDVG+GKTEVA+RA Sbjct: 608 QFSQDTEWQREFEDSFPYEETDSQVRSIEEIKADMESDRPMDRLLCGDVGYGKTEVAIRA 667 Query: 642 AFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE 701 F A+ + KQVA LVPTT+LAQQH++ ++RF ++P+R+EM+SRF S Q QI+ +V Sbjct: 668 CFKAIMDGKQVAFLVPTTILAQQHFNTIKERFRDYPIRVEMMSRFVSPARQKQIMKDVQR 727 Query: 702 GKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPR 761 G +D+L+GTH++L ++KFKDLGLL++DEE RFGVRHKE++K+MR NVD+LTL+ATPIPR Sbjct: 728 GLVDLLVGTHRILSKNLKFKDLGLLVIDEEQRFGVRHKEKLKSMRENVDVLTLSATPIPR 787 Query: 762 TLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVEN 821 TL M ++G+RD+S++ PP R + T+V EY+ ++R+AI+RE+ RGGQ+Y++YN +E+ Sbjct: 788 TLQMGLTGIRDMSLLEEPPEDRTPISTYVTEYNPSLIRDAIIRELDRGGQIYFVYNRIED 847 Query: 822 IQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 I + +L ELVPE IAI HG+M E+ELE VM DF +++L+CTTIIETG+DI N Sbjct: 848 IDQMEFKLKELVPELNIAIAHGRMNEKELENVMLDFQDGIYDLLLCTTIIETGLDIQNVN 907 Query: 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGA 941 T+II AD GL+QL+QL+GR+GRS ++A+ K++T ++KRL AI + G+ Sbjct: 908 TMIIYNADKMGLSQLYQLKGRIGRSDRTSFAYFTYEGQKSLTEISEKRLMAIKDFTEFGS 967 Query: 942 GFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQ 1001 GF +A DLE+RGAG LLGE Q G + IG+ LY++LLE AV K Sbjct: 968 GFKIAMRDLELRGAGNLLGESQHGHIAKIGYDLYVKLLEQAVREAKGETISEN----KNT 1023 Query: 1002 TEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLL 1061 +E+++ +P+D+I + T++ YK+IAS + E++ EI ELIDRFG +P P ++ Sbjct: 1024 VIIEIKVNGYIPEDYISENETKIDIYKKIASIQDEDDYSEIIDELIDRFGDVPKPIVNIM 1083 Query: 1062 DIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKF 1121 D++ ++ +L I ++ + ++F+ + ++ L L + + R D + K Sbjct: 1084 DVSIIKAFCARLSIESIKEIKGELFLQFSSPDKISLEKLKYLTENYKKEMRFDLSEKPKI 1143 Query: 1122 IQDLSER--KTRIEWVRQFMRE 1141 I ++ + IE + +++ Sbjct: 1144 ILGFEDKNLRDPIEVLSILLKD 1165 >UniRef50_D1CBU7 Transcription-repair coupling factor n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CBU7_THET1 Length = 1150 Score = 1103 bits (2852), Expect = 0.0, Method: Composition-based stats. Identities = 407/1129 (36%), Positives = 624/1129 (55%), Gaps = 39/1129 (3%) Query: 3 EQYRYTLPVKAGEQRL-LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 + + GE+ L +A L A + +LI P + A + D +S Sbjct: 15 QIQHLKAQLSRGEKVCYLPSAVPSAYPALWATLFAEMHTDTLLIVPRPEEAQNVADSLST 74 Query: 62 FT--DQMVMNLADWETLPYDSF-SPHQDIISSRLSTLYQLPT--MQRGVLIVPVNTLMQR 116 + + V+ + LPY+ SP QD RLS L ++ + +++ V ++++ Sbjct: 75 YLWDPKRVLLWPAHDDLPYERIASPTQDSPFRRLSALERILRTDREPLLIVASVKSILEP 134 Query: 117 VCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176 + H +K G + AL ++ GY V V E G+++ RG + D++ S Sbjct: 135 TLARRYFEDHREFVKTGDAVDIIALANRVAELGYSPVASVEEVGQFSRRGGIFDIWTPSS 194 Query: 177 ELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE 236 +LP RL+ F DE++S+R+FD ++QR+ E+E+ +++ +E P + L R Q D Sbjct: 195 DLPIRLELFGDEVESIRLFDPETQRSTREIESFSIISPYEIPVAEYESALERLQQIDLSN 254 Query: 237 VKRD----PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLET 290 ++ + + +++S G LPA I +F L L Y T++ L Sbjct: 255 LRHEVTSSWKQSLEKLSAGDLPA-IHSIIAPYFPSGLGNLLDYLSEGTIVFTDLPDRLAL 313 Query: 291 SAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAAN 350 +A ++ P ++ + LK P+++ P +A Sbjct: 314 TASTLRSHIEGMRLEMEQSGDIPSNLLSPVF-EWSYIEDRLKALPKIE------PVNSAE 366 Query: 351 ANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQ 410 NL F P + +D LR +++ + + E + + + Sbjct: 367 GNLKFYPAPQIRS--STIDIVDNLRSWIDEGRTVFIVT----RHHERIRHVAKEHNLPLA 420 Query: 411 RIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTL 470 ++ +++ G+ + G++ NL ++ +++L G R RR + R+ Sbjct: 421 L---DEDVKQGQMFIVPGSIQDGWICDDINLVVLSDTELWGYREPRRARSPRKAPQR--- 474 Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 LA+L G VVH++HGV +Y G + G EYL+L YA +LYVPV + IS Sbjct: 475 -VFLADLQPGSYVVHVDHGVAKYVGNVMRGSSGAEREYLVLEYAGGDRLYVPVDQIDRIS 533 Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 Y GG E L +LG W+R +++A + +A ELL +YA R +G +F D E + Sbjct: 534 PYIGGGE--PALSRLGTADWARTKRRAKKAADQLAKELLQLYAAREIAKGHSFSPDNELH 591 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 + F +FP+ T DQ AI V +DM P MDRL+CGDVG+GKTEVA+RAAF AV + K Sbjct: 592 KEFESAFPYVETDDQLAAIEDVKADMESPKPMDRLICGDVGYGKTEVALRAAFKAVADGK 651 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 QVAVLVPTT+LA QHY+ FR RF + +R+EM+SR R+ KE+ Q+L ++ +G +DI+IGT Sbjct: 652 QVAVLVPTTVLALQHYETFRSRFNPFGIRVEMLSRLRTKKERDQVLEDLQKGNVDIVIGT 711 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H +LQ +V FKDLGL+IVDEE RFGV+HKE +K +R VD+LTLTATPIPRTL MA+SG+ Sbjct: 712 HTILQKNVVFKDLGLVIVDEEQRFGVKHKETLKQIRTQVDVLTLTATPIPRTLQMALSGV 771 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 RD+S+I T P RL V T++ + ++R++I+RE+ RGGQV+Y++N V++I K A +L Sbjct: 772 RDMSVIETAPEDRLPVYTYIVPKNDSIIRDSIIRELERGGQVFYVHNRVQDIYKVAHKLQ 831 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 E+VPEARI + HGQM E++LE+VM DF H ++VLVCTTIIE+G+DIP ANT+I++ A H Sbjct: 832 EMVPEARITVAHGQMPEQQLEQVMLDFMHHHYDVLVCTTIIESGLDIPNANTLIVDDATH 891 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 GLAQL+QLRGRVGRS ++AYA+L+ MT DAQKRLEAI+ LGAGF +A DL Sbjct: 892 MGLAQLYQLRGRVGRSSNRAYAYLMYRPDARMTEDAQKRLEAISEATQLGAGFRVAMKDL 951 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS 1010 EIRGAG LG EQSG + IG LY +++E AV L+ G ++L +P+ Sbjct: 952 EIRGAGNFLGPEQSGHVYAIGLELYTQMIERAVQELRTG----QPISEPPAVTIDLPIPA 1007 Query: 1011 LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQA 1070 L+P+ ++ D +TR+ Y+R+AS T EL ++ E+ DRFG LP+ A L+ + L+ A Sbjct: 1008 LIPEHYVSDRDTRIRLYRRLASTSTARELRSMESEMRDRFGPLPEEAINLIKLIDLKIVA 1067 Query: 1071 QKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRL 1119 K G+ + + +I+ ++ P R++ + Sbjct: 1068 AKAGVTAIRAADNEVIIKTDNPPPAERLAHWRGVRVVPGQVRVEISGKP 1116 >UniRef50_B0U870 Transcription-repair coupling factor n=86 Tax=Alphaproteobacteria RepID=B0U870_METS4 Length = 1203 Score = 1102 bits (2851), Expect = 0.0, Method: Composition-based stats. Identities = 419/1175 (35%), Positives = 643/1175 (54%), Gaps = 46/1175 (3%) Query: 6 RYTLPVKAGEQRLLGELTGAACATLVAEIAE-----------RHAGPVVLIAPDMQNALR 54 R ++ G+ L + A +VA++A + +V +A D + Sbjct: 31 RAVEALRRGDSPTLARVPDGFDALVVADLARVLGQDPQSRASQGPAALVHVARDGTRSAA 90 Query: 55 LHDEISQFTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLP-----TMQRGVLIV 108 ++ + V+++ W+ PYD SP+ I + R++ L +L + V++ Sbjct: 91 FAGALAFVAPEIEVLSIPAWDCQPYDRVSPNPAIAAERMTALSRLARTRSSEERPRVVVT 150 Query: 109 PVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGAL 168 VN L+QRV + G + D + L++ G+ V + GEYA RG + Sbjct: 151 TVNALVQRVPARDRIAVETFSAAVGNAVDTDKIVAWLEANGFLRTGTVRDTGEYAVRGGI 210 Query: 169 LDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFR 228 +DL P G P RLDFF D ++S+R FD ++QRT+ ++ +++L+P E I FR Sbjct: 211 IDLSPPGLPNPVRLDFFGDTLESIRSFDPETQRTIGQLRSLDLVPMSEVQLTTETIRRFR 270 Query: 229 SQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDL 288 + F + +Y+ VS+G AG+E+W PLF+ + L LF Y L+ + Sbjct: 271 QGYVAAFGAATRDDRLYEAVSEGRRAAGLEHWMPLFY-DRLDTLFDYLAGVPLVFDKDVD 329 Query: 289 ETSAERF---QADTLARFENRGVD----PMRPLLPPQSLWLRVDELFSELKNWPRVQLKT 341 + + ER Q AR E L +L+L E ++ +L Sbjct: 330 DAAGERLGQVQEYHDARCEALKAPQPGVAPYKPLGSDALYLSPAEWAKRVEGARVARLTP 389 Query: 342 EHLPTKAANANLGFQKLPDLAVQAQQKAP-------LDALRKFLETFDGPVVFSVESEGR 394 +P + + P ++ + L+ V+ + SEG Sbjct: 390 FAVPESPGRPIVDCEAEPARNFAPERAQEGVNVFDAAVQHVRALQGSGHHVILAAWSEGS 449 Query: 395 REALGELLARIKIA-----PQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDL 449 R+ L +L + + L + + + E GF LA++ E D+ Sbjct: 450 RDRLCGVLTDHGLPKPKTVTRLSDTLALKRGQDVAVAVWGLEAGFTI--ERLAVVAEGDI 507 Query: 450 LGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL 509 LG+R+ R ++ + P +I + L G VVH +HG+GR+ G+ T+ A G + L Sbjct: 508 LGDRLVRPKR---KAKRPQDVILEVQALSPGDLVVHADHGIGRFTGLKTVTAAGAPHDCL 564 Query: 510 MLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELL 569 + Y N L +PV ++ L++RY G E + PL KLGG AW + K ++ ++A L+ Sbjct: 565 EIQY-NGGLLLLPVENIELLTRY-GSEEADVPLDKLGGGAWQARKAKLKRRILEMAGALI 622 Query: 570 DIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGD 629 + A+R + Y F FP+E T DQ AI A L D+ MDRL+CGD Sbjct: 623 KVAAERFLRPAPKLVPPDGTYGEFAARFPYEETEDQEAAIAATLGDLTAGRPMDRLICGD 682 Query: 630 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSA 689 VGFGKTEVA+RAAF+A + +QVAV+VPTTLLA+QHY F +RF PV + SRF S+ Sbjct: 683 VGFGKTEVALRAAFVAAISGRQVAVVVPTTLLARQHYRTFAERFKGLPVNVAQASRFVSS 742 Query: 690 KEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANV 749 E ++ +A+G +DI++GTH LL + F+DLGL+I+DEE FGV HKER+KA+RA V Sbjct: 743 AELKRVREGLADGTVDIVVGTHALLAKTIGFRDLGLIIIDEEQHFGVAHKERLKALRAEV 802 Query: 750 DILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRG 809 +LTL+ATPIPRTL +AM+G+R+LSIIATPP RLAV+TFV +D ++VREA+LRE RG Sbjct: 803 HVLTLSATPIPRTLQLAMTGVRELSIIATPPVDRLAVRTFVTPFDPLLVREALLRERYRG 862 Query: 810 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 869 GQ +Y+ +E++ + L +PEA++ I HGQM +LE VM F+ +F++L+ TT Sbjct: 863 GQAFYVVPRIEHLDEVKRFLDREMPEAKVGIAHGQMPAGQLEDVMTAFYEGKFDILLSTT 922 Query: 870 IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKR 929 I+E+G+DIPTANT+I+ RAD FGLAQL+QLRGRVGRS +AYA TP KA+T A++R Sbjct: 923 IVESGLDIPTANTLIVHRADMFGLAQLYQLRGRVGRSKARAYALFTTPEGKALTVQAERR 982 Query: 930 LEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAG 989 L+ + SL+ LGAGF LA+HDL+IRGAG LLG+EQSG ++ +G+ LY ++LE+AV ALK G Sbjct: 983 LKVLQSLDTLGAGFQLASHDLDIRGAGNLLGDEQSGHIKEVGYELYQQMLEDAVAALKEG 1042 Query: 990 REPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDR 1049 + ++ S + L P +P++++ D++ RL Y+R+A+ ++ ELE ELIDR Sbjct: 1043 KAVPADEQWS--PTIALGAPVTMPEEYVSDLSVRLGLYRRLATLDSDAELESFGAELIDR 1100 Query: 1050 FGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQ 1109 FG LP LL I ++ ++ + K+E KG V F ++ NPA L + +Q Sbjct: 1101 FGPLPPEVEQLLKIVTIKILCRETNVEKVEAGPKGIVFHFRDRAFANPARLAAYIAEQRS 1160 Query: 1110 HYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 ++ + FI++L R++ +R+L + Sbjct: 1161 FAKVRPDMSVVFIRNLDTVAERLKETTAILRDLTK 1195 >UniRef50_A5KKI8 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A5KKI8_9FIRM Length = 1115 Score = 1102 bits (2851), Expect = 0.0, Method: Composition-based stats. Identities = 391/1157 (33%), Positives = 595/1157 (51%), Gaps = 74/1157 (6%) Query: 5 YRYTLPVKAGEQRLL--GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 Y + E ++ L++ I +++ + + A + ++E F Sbjct: 14 YEEIRKNRTKENGMIQISGCVNTQKIHLLSGIGSGCGYK-LVVFSNEEKAKKAYEEYLLF 72 Query: 63 TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM---QRGVLIVPVNTLMQRVCP 119 + + L Y + + + + R+ L + + +I ++ + + Sbjct: 73 -GEETYLYPARDLLFYYADIKGKTLTNRRMEVLRAIAEKKKEEPVTVITTMDAFLDGIIS 131 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 + + + + + L L + GY Q+ G++A RG ++D+FP+ E+P Sbjct: 132 PDEIQKNRIHITGEDTVDLTKLEQDLTALGYERESQIEAPGQFAVRGGIIDVFPLAEEMP 191 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR 239 R++ + DEIDS+R+FD SQR++E + I + PA E Sbjct: 192 VRIELWGDEIDSIRMFDAKSQRSIENISEITIYPASE----------------------- 228 Query: 240 DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV---NTGDLETSAERFQ 296 F + L YFP N L+ L+ +AE + Sbjct: 229 ----------------------NCFGNNGLVSFLKYFPENETLLFYDEPHRLQETAETVE 266 Query: 297 ADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLP--TKAANANLG 354 A+ +NR M+ + + ++ SE+ + + L T + Sbjct: 267 AEYTESLKNRADAGMKEEGEEELRVFQTKDIISEMNRYSGIGLTTLESKCGLFKVRSVYT 326 Query: 355 FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMR 414 Q + L++ L+ VV S R + L E L ++ Sbjct: 327 VQAKGVNPYNNSFELLTRDLKR-LKRNGYRVVLLSGSRTRAKRLAEDLRDYDLSSFYSED 385 Query: 415 LD-EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRN 473 + E G A G+ + +I ESD+ G + + +R I++ Sbjct: 386 MQREVKPGEIMAAYGYASEGYEYPMLKFVVISESDIFGRKK----KKKKRKKYEGQRIQD 441 Query: 474 LAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYA 533 AEL G VVH HG+G Y G+ +E I +Y+ + YA LY+PV+ + LI +YA Sbjct: 442 FAELKPGDYVVHENHGIGVYKGIEKIEVEKIVKDYMKIVYAEGGVLYIPVAQMDLIQKYA 501 Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 G + L+KLG W + + + + V+ VA +L+++YA R EGF + D + F Sbjct: 502 GADAKKPRLNKLGTIQWGKTKSQVKKAVQIVAKDLVELYAVRQQSEGFVYGPDTVWQKEF 561 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 + FPFE T DQ QAI DM MDRL+CGDVG+GKTE+A+RAAF AV KQV Sbjct: 562 EEMFPFEETDDQLQAIEDTKHDMESKKIMDRLICGDVGYGKTEIAIRAAFKAVQEGKQVV 621 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 LVPTT+LAQQHY+ F R +PVRI+++ RFRSA EQ + + + +G +DIL+GTH++ Sbjct: 622 CLVPTTILAQQHYNTFVQRLKEFPVRIDLLCRFRSAAEQKKTIEDTKKGFVDILVGTHRV 681 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 L DV FKDLGLLI+DEE RFGV HKE+IK ++ N+D+LTLTATPIPRTL+M++ G+RD+ Sbjct: 682 LSKDVVFKDLGLLIIDEEQRFGVTHKEKIKKLKENIDVLTLTATPIPRTLHMSLIGIRDM 741 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 S++ P R+ ++T+V EY+ +VREAI RE+ R GQVYY+YN V +I A R+ LV Sbjct: 742 SVLEEAPNERMPIQTYVMEYNDEMVREAITRELARDGQVYYVYNRVNDIADVAGRIQSLV 801 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 P+A +A HGQM+ERELE +M DF + +VLV TTIIETG+DIP ANT+II+ AD FGL Sbjct: 802 PDANVAFAHGQMKERELEDIMYDFINGDIDVLVSTTIIETGLDIPNANTMIIQDADRFGL 861 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 +QL+QLRGRVGRS+ AYA+LL K + A+KRL AI DLG+G +A DLEIR Sbjct: 862 SQLYQLRGRVGRSNRMAYAFLLYQRDKLLKEVAEKRLSAIREFTDLGSGIKIAMRDLEIR 921 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLP 1013 GAG LLGE QSG ME +G+ LY ++L AV LK G E + T ++L + + +P Sbjct: 922 GAGNLLGEAQSGHMEAVGYDLYCKMLNEAVRQLKGGPE-----AETFTTLIDLNVDAYIP 976 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKL 1073 + +I + +L YKRIA+ ++E ELE++ ELIDRFG +P + LL IA L+ A + Sbjct: 977 EYYIKNEYQKLDIYKRIAAIESEEELEDMTEELIDRFGDIPKKVQQLLVIASLKSLAHSV 1036 Query: 1074 GIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQ------DLSE 1127 + +E + EK ++P+ + L F+ S Sbjct: 1037 YVTAIEQKGEEIRFTMYEKAKIDPSGIPKFLDSYKNDLIFRAEEPPYFLYCRKGRNKKSN 1096 Query: 1128 RKTRIEWVRQFMRELEE 1144 + ++ VR+ + +L++ Sbjct: 1097 TENVLDTVRRILEDLKK 1113 >UniRef50_C7H318 Transcription-repair coupling factor n=3 Tax=Ruminococcaceae RepID=C7H318_9FIRM Length = 1155 Score = 1102 bits (2850), Expect = 0.0, Method: Composition-based stats. Identities = 370/1152 (32%), Positives = 573/1152 (49%), Gaps = 23/1152 (1%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 E + + L L A A L A + + + ++ P A D++ Sbjct: 11 EYQKIAESLHTPGPAALFGLPPAGRALLYAALQKDLDRVLCIVTPGEAEATHFADDLKAL 70 Query: 63 TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSF 122 + + ++ RLS L L + + VP L+Q P Sbjct: 71 -GLTAAVFPPRDFMLRPVEGAGREYEYRRLSVLGALAGGRLNAVCVPAEALLQYTVPRDE 129 Query: 123 LHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRL 182 + L +K G +R+AL +L +AGY QV G+++ RG ++D++ P R+ Sbjct: 130 FLRNTLTLKPGMVYNREALVARLFAAGYVRRSQVDGPGQFSVRGDIVDIYAPDMHQPARV 189 Query: 183 DFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT--DKAAIELFRSQWRDTFEVKRD 240 +++DDEIDSL FD+ +QR +E I L PA E E R + KR Sbjct: 190 EYWDDEIDSLASFDLLTQRRDGSLEKIYLSPAREVLFGSTAETAEALRGAIKKARGKKRT 249 Query: 241 -----PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERF 295 E Q+ G +P ++ + + + +P L + + +++ A++ Sbjct: 250 AMEKATEADLAQLDSGLMPEAMDKYYGIRYPQP-ATLLDHLDSPIFVLDEVGGIRDAQKA 308 Query: 296 QADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTE--HLPTKAANANL 353 ++ L+ +D+L + + + + + Sbjct: 309 TEYRRGEELTGLLEEGVLCPGLDVLYQTMDDLAIAAQKQSTLLCENFLRGMNEFKLKDLI 368 Query: 354 GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIM 413 + + + L + +FS +G +L K + Sbjct: 369 NVEAFAAPNWGGDLASLREDLDPLIAQGYAVTLFSGTPKGAAALTRDL--TDKGYSVSMS 426 Query: 414 RLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRN 473 R + ++ G G + A+I +++R + + Sbjct: 427 RDVRPAKGIVQVLPGHLTAGCTFPFAHAAVISSR--RHGLDEEAAAENKRRKKNKNALSS 484 Query: 474 LAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYA 533 L+++ G VVH HG+G YAG+ LE G +YL + Y+ LYVPV+ L L+SRY Sbjct: 485 LSDIKPGDYVVHQSHGIGMYAGIQRLEVQGAIKDYLKIQYSGSDVLYVPVTQLDLLSRYT 544 Query: 534 GGAEE-NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 +E L KLGG W R R K + ++A EL+++YA+R +G+AF D + Sbjct: 545 APGDEEKVKLAKLGGAEWQRTRAKVKKAAEEMAQELIELYARRRQAQGYAFPPDGDWQND 604 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F F ++ T DQ A + DM +P MDRL+CGDVG GKTEVA+RAAF V KQ Sbjct: 605 FETRFEYDETDDQLHATAEIKQDMEKPYPMDRLLCGDVGVGKTEVALRAAFKCVMGGKQC 664 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 A+L PTTLLA QHY+ R +PV+I M+SRFR+AK+Q + L + G +DI++GTH+ Sbjct: 665 ALLAPTTLLAWQHYNTLLSRMEAFPVKIGMLSRFRTAKQQKETLRGLQSGSVDIVVGTHR 724 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 LL DV+F DLGL+I+DEE RFGV+HKE++K VD+LTL+ATPIPRTLNMAMSG+RD Sbjct: 725 LLSKDVRFHDLGLVIIDEEQRFGVKHKEKLKENFIGVDMLTLSATPIPRTLNMAMSGIRD 784 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 832 LS I PP R V+TFV EY+ +++ EA+ +E+ RGGQVYYL+N V+NI+ A +++L Sbjct: 785 LSTIEQPPIERQPVETFVLEYNDVILAEAMKKELARGGQVYYLHNRVDNIESTAAHVSQL 844 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 VP AR+ I HG+M E EL V + ++LVCTT+IETGID+ NT+IIE AD G Sbjct: 845 VPGARVGIAHGKMTEEELNPVWQHLLNGEIDILVCTTLIETGIDVRNCNTLIIEDADRMG 904 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 LAQL+Q+RGRVGRS +AYA+ K +T AQKRL AI G+GF +A DL+I Sbjct: 905 LAQLYQIRGRVGRSGRKAYAYFTFRRDKTLTDIAQKRLSAIREFTAFGSGFRIAMRDLQI 964 Query: 953 RGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLL 1012 RGAG LLG Q G ME +G+ LY+++L A+ K + ++LR+ + + Sbjct: 965 RGAGSLLGHSQHGHMEAVGYDLYVKMLGQAIARAKGE----PVQRDKSECLIDLRVDAYI 1020 Query: 1013 PDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 P+ +I D R+ YKRIA+ +T + ++ ELIDR+G P L++++ R QA Sbjct: 1021 PEKYIADGPGRIEAYKRIAAIQTPEDAADVLDELIDRYGDPPPSVSDLVNVSLARVQATA 1080 Query: 1073 LGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRI 1132 +G+ ++ + V++ ++ + GLL + L + + + Sbjct: 1081 VGVYEVTQKKDTLVLQ---VEQLDLRMIQGLLVAFNGRVVTGAGAKPYLSVTLQKEEKPL 1137 Query: 1133 EWVRQFMRELEE 1144 E ++ ++ + E Sbjct: 1138 ELLQSILKAMAE 1149 >UniRef50_A7VP19 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VP19_9CLOT Length = 1149 Score = 1101 bits (2849), Expect = 0.0, Method: Composition-based stats. Identities = 389/1151 (33%), Positives = 599/1151 (52%), Gaps = 28/1151 (2%) Query: 1 MPEQYRYTLPVKA-GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI 59 + E V+ + ++G A L+ + R +++A D RL +++ Sbjct: 11 VTEYETLVSAVERHNTPAAVTGVSGIHKAHLIHSLCARTGRKALVLASDEGEGQRLCNDL 70 Query: 60 SQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCP 119 S + + + ++ RL + + V+I ++ +Q P Sbjct: 71 SSM-GTAALVYPARDFNFRAAEGQSREYEHQRLQVMAGMLDGDYQVVISCIDAALQYTIP 129 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 L L ++ GQ + + L ++GY QV G++A RG +LD F + P Sbjct: 130 PDELRSKRLTLRAGQEAPLEKIEALLSASGYERYQQVEGPGQFAVRGGILDFFTPDASAP 189 Query: 180 YRLDFFDDEIDSLRVFDVDSQR-TLEEVEAINLLPAHEFPTDK-----AAIELFRSQWR- 232 R++F+ DEID+L FD ++QR T + +E I L P+ E IE + R Sbjct: 190 VRVEFWGDEIDTLCYFDPETQRRTDDPLEEITLAPSTEVLVSSPGSLAKKIERLSAGLRG 249 Query: 233 -DTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETS 291 K Q+ G P + + PL + P L Y L+ + ++ Sbjct: 250 KTAVRAKERLAQEADQLLAGKRPGSADKFLPLLYPSP-ATLLDYLEPEALVFQSEPIK-I 307 Query: 292 AERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELF--SELKNWPRVQLKTEHLPTKAA 349 ER ++ E+ +L D ++ +L++ V L T + Sbjct: 308 KERLRSTAWQWGEDLKDYLEEGILCKGLDAFSGDYIYVQKQLEHRDCVYLDTFVRGSYDT 367 Query: 350 NANLGFQ-KLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIA 408 + L+V L + + +V +E A E L I Sbjct: 368 PLSSLINLNARQLSVWGGGMQLLQEDLNAILSPKMRIVVLGGTERSARAAAEDLQNSGIP 427 Query: 409 PQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPD 468 + ++ G+ GF N ALI A + +R+ Sbjct: 428 CEYRDDAKTLFLGRVTVLPGSLSAGFEYPTANFALITHG-----HFAAAPKRARKRQKNA 482 Query: 469 TLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHL 528 I +L+EL G +VH HGVG + G+ LE G+T +YL + YA LYVPV+ L + Sbjct: 483 KEIYSLSELAPGDYIVHSAHGVGVFEGIHKLEMQGVTKDYLKVRYAKGDILYVPVTQLDM 542 Query: 529 ISRYAGGAEE-NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 587 +S+Y G EE L++LGG W +A+ + V+D+A EL+ +YA+R +G AF D Sbjct: 543 VSKYIGPKEEVKVRLNRLGGQDWQKAKARVRSAVKDIAKELIKLYAERMKLKGHAFPPDT 602 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 + F F +E T DQ + I + DM + MDRL+CGDVGFGKTEVA+RAAF V Sbjct: 603 GWQRDFESRFEYEETEDQLRCIQEIKEDMEKEQPMDRLLCGDVGFGKTEVALRAAFKCVT 662 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 + KQ A+LVPTT+LA QHY RF +P+++E++SRFR+ K+Q +IL ++ G+ID++ Sbjct: 663 DSKQCALLVPTTILAWQHYQTVTQRFEGFPIKVEILSRFRTPKQQAEILKQLKRGEIDMI 722 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 IGTH+L+Q DV+F+DLGL+I+DEE RFGV KER K++ NVD+LTL+ATPIPRTLNMA+ Sbjct: 723 IGTHRLVQKDVQFRDLGLVIIDEEQRFGVAQKERFKSVTKNVDVLTLSATPIPRTLNMAL 782 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 SG+RD+S + P R V+T+V EYD V+ +A+ RE+ RGGQVYYL+N VE+I++ A Sbjct: 783 SGIRDMSSLEEAPQDRHPVQTYVLEYDQAVINDAVRRELRRGGQVYYLHNKVESIERVAA 842 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 RL +PEA++ GHG+M E EL V Q NVLVCTTIIETG+D+P NTIIIE Sbjct: 843 RLQAQIPEAKVGFGHGKMPEGELSEVWRRVMEQEINVLVCTTIIETGVDVPNVNTIIIED 902 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 ADH GL+QLHQ+RGRVGRS +AYA+L K ++ +QKRL AI + G+GF +A Sbjct: 903 ADHMGLSQLHQIRGRVGRSSRRAYAYLTFTRNKVLSEISQKRLAAIREFTEFGSGFKIAM 962 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR 1007 DLE+RGAG +LG EQ G MET+G+ +Y+ LL AV K S E + V+++ Sbjct: 963 RDLELRGAGNILGGEQHGHMETVGYDMYLRLLGEAVSEEKGEEASSYE----LECLVDVQ 1018 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 + + +P+ +I ++ RL Y+RI+ +++++ ++ ELIDRFG P + L+D+A +R Sbjct: 1019 VQAHIPEGYIESLSQRLEIYRRISDIRSQDDAMDVLDELIDRFGEPPASVKGLIDVALIR 1078 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE 1127 A LGI +++ N ++ + ++ ++ L+ + ++ + L Sbjct: 1079 NTAASLGIYEIKQNAGALLLY---QRKLDMEFVSRLIGAFKKRVLVNAGAKPYISVKLQA 1135 Query: 1128 RKTRIEWVRQF 1138 + +E +RQ Sbjct: 1136 GDSPLETLRQV 1146 >UniRef50_UPI00016C0762 transcription-repair coupling factor n=1 Tax=Epulopiscium sp. 'N.t. morphotype B' RepID=UPI00016C0762 Length = 1175 Score = 1101 bits (2847), Expect = 0.0, Method: Composition-based stats. Identities = 368/1160 (31%), Positives = 588/1160 (50%), Gaps = 32/1160 (2%) Query: 6 RYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD- 64 ++ + ++G + AA L+ +A+ +IA + A + ++++ Sbjct: 20 KFINEFNRNKTGIVGGIIEAAKGHLIYTLADFLDTCPFVIASSEEEAEVVKEDLAFLFGS 79 Query: 65 QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLH 124 + V+ + L Y++ +I+ R+ L + +++ ++ L+ + P Sbjct: 80 ENVIYYPSRDILFYNADVHSNEIVKQRIEALDAIIKNNEAIIVTTIDALLNPLSPKDEFI 139 Query: 125 GHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDF 184 +V+K G + ++ QL GY V +V G++A RG ++D+F + P R++ Sbjct: 140 RAQIVIKIGDTVDLQSMSYQLIENGYERVGRVEVVGQFAIRGGIMDIFSPANNTPIRMEL 199 Query: 185 FDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEV------- 237 +D EIDS+R F +QRT++ +E + P E + + + Sbjct: 200 WDTEIDSIRRFSPITQRTIDNIERAYIYPNQEIIIPREKLLKAIPIIEKELKATIGVLRE 259 Query: 238 ----------KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGD 287 K + + + G + P F LF Y + T Sbjct: 260 SGAKSAANRIKENTNEDIESIVNGLNIETQVLYAP-FCDMETASLFDYLEYKKTIFITD- 317 Query: 288 LETSAERFQADTLARFENRGVDPMRPLLPPQSLWL--RVDELFSELKNWPRVQLKTE-HL 344 ++ ++ L E+ + P + +E+ +++ + Sbjct: 318 IKKCKDKLLRVFLEYEESVKSRLEYGHMLPSMVKFIFNREEIIAKVFEKNYIGFMPFLAS 377 Query: 345 PTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLAR 404 A N+ +L ++ + + K + VF ++ + + E+L Sbjct: 378 DDMATTKNILEIRLNEINSNYKGLKIFEQDLKQYKAEGKATVFLAGTKSKAAHVAEILEE 437 Query: 405 IKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRT 464 KI + + G+ HGF+ ++ + +L G + R+ S + Sbjct: 438 QKIYTALGDLTYDIQKGQILIASGSLSHGFIYEDLEFVILSDRELFG----KDRKVSTKK 493 Query: 465 INPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVS 524 I + EL G VVH HG+G + G+ + G+ + L + Y LYV ++ Sbjct: 494 KYKGAKIESFMELAEGDYVVHENHGIGIFIGIEKIVTEGVARDNLKINYEGGT-LYVNIN 552 Query: 525 SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 + L+ +Y G L+ LG W +A+ KA V+++A EL+ +Y++R GFA++ Sbjct: 553 QMDLVQKYVGSEGAAPKLNMLGNPEWKKAKSKARNSVKNIAKELILLYSKRENSRGFAYE 612 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 D F +SFP+E T DQ AI AV +DM MDRL+ GDVG+GKTEVA+RAAF Sbjct: 613 KDSIWQTEFEESFPYEETSDQIDAIQAVKTDMESDKIMDRLILGDVGYGKTEVAIRAAFK 672 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 A+ NHKQVA LVPTT+LAQQH++ F R + + + ++SRFR+ K+ + L + G I Sbjct: 673 AILNHKQVAYLVPTTVLAQQHFERFLKRMESQAISVGVLSRFRTPKQIKETLKGIESGMI 732 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 DI+IGTH+LL DV FKDLGLLI+DEE RFGV HKE++K MR VD LTLTATPIPRTL Sbjct: 733 DIVIGTHRLLSKDVLFKDLGLLIIDEEQRFGVAHKEKLKQMRTEVDALTLTATPIPRTLQ 792 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 M++ G+RD+S+I P+ R AV+T+V E +++AI REI R GQVY+L V+NI + Sbjct: 793 MSLIGIRDMSVIEEAPSERRAVQTYVLEESDDFIKDAINREINREGQVYFLSXRVQNIVE 852 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 A +L+ +VP A++A+ HGQM RELE +M F ++ NVLVCTTIIETG+DI ANTII Sbjct: 853 KAAQLSNMVPXAKVALAHGQMSVRELEAIMERFENKEINVLVCTTIIETGLDIANANTII 912 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 I AD GL+QL+QLRGRVGRS QAYA+LL ++ A+KRL AI LGAGF Sbjct: 913 IVDADKMGLSQLYQLRGRVGRSDKQAYAYLLYKRDXILSEVAEKRLNAIKQFTQLGAGFK 972 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 +A DLEIRGAG+LLG QSG M IG+ LY ++L A+ + G + T+ + + Sbjct: 973 IAMRDLEIRGAGDLLGASQSGHMAKIGYELYSKMLREAILIEQGGGIEEEKIETTIEIK- 1031 Query: 1005 ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA 1064 + + + ++I D +L YK+IAS +TE++ + E+ DR+G P LL+IA Sbjct: 1032 ---INAFISSNYIKDEIQKLDIYKKIASIRTEDDYLNVMDEITDRYGDPPTTVLNLLNIA 1088 Query: 1065 RLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD 1124 ++ A I + N +++F + L+ + +D RL F Sbjct: 1089 MIKSSANSQNISLISQNIHMLMLKFTHEVEGKVLSLLANKYGKILRINIDKDIRLFFNTQ 1148 Query: 1125 LSERKTRIEWVRQFMRELEE 1144 +K +++V+Q + +++E Sbjct: 1149 EIPQKEYLDFVKQILCDIKE 1168 >UniRef50_A2RH86 Transcription-repair coupling factor (TRCF) n=71 Tax=Streptococcaceae RepID=A2RH86_LACLM Length = 1180 Score = 1100 bits (2845), Expect = 0.0, Method: Composition-based stats. Identities = 399/1165 (34%), Positives = 617/1165 (52%), Gaps = 46/1165 (3%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMN 69 E+ LL L+G A + ++A E A +++ +A L+DE+S + V Sbjct: 20 FSKRERTLLTGLSGTAKSLVMANAYENVADKYIIVTDSQFHANELYDELSTLLGEEKVFQ 79 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQR-GVLIVPVNTLMQRVCPHSFLHGHAL 128 + + + +D I+ RL L L + G L+VP L + + L Sbjct: 80 FFSDDNIYAEFALASKDRIAYRLEALNFLLDERATGFLVVPFLALRSYLPAPENFLENYL 139 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 ++ G L L AGY +VM GE++ RG ++D++P+ +E P RL+FF DE Sbjct: 140 LLTSGDEYDLSNLVNLLSKAGYEKTQRVMTPGEFSMRGDIVDIYPLDAENPVRLEFFGDE 199 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRD--TFEVKRDPEHIYQ 246 +D++R FDV+SQR+L +E + + PA +F + + + + + Sbjct: 200 VDTIRSFDVESQRSLTSLERLEIYPASDFILTDNEFDKGAKSLTEMTNLLGDQTSLSVSE 259 Query: 247 QVSKGT----------------------LPAGIEYWQPLFFSEPLPPLFSYFPANT-LLV 283 Q G+ + + F+ + L +YFP N + + Sbjct: 260 QARNGSAMTDPSAKSYMEEVISAAQNHYYHKDLRKFAEYFYDKKT-SLLNYFPKNVQIFI 318 Query: 284 NTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEH 343 + LA F R Q+ L K + Sbjct: 319 DDFQKVNEMNNKLEMELADFILSEKAMERGF-EGQTYLLDTMAKVRNYKPATFFSNFQKG 377 Query: 344 LPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLA 403 L F++ Q + + +F++ + VV +V SE R++L EL Sbjct: 378 LGNLRFEQLYNFKQHSMQQFFGQLELFYTEVERFIKQ-EFTVVLAVSSEKLRKSLHEL-- 434 Query: 404 RIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRR 463 ++ Q + R + L+ +GF L ++ E ++ G+ R+++ + Sbjct: 435 --DLSLQEVDR-ESIQVGKVNLIDLQLSNGFNFLDEKLVVMTEQEIFGK--MRKKKARKL 489 Query: 464 TINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPV 523 I +++ EL +G VVH HG+G+Y G+ TLE GG+ +YL + Y N + VPV Sbjct: 490 NITNAERLKDYNELAVGDFVVHKNHGIGKYLGLQTLEVGGMHRDYLTIQYQNGDTISVPV 549 Query: 524 SSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAF 583 L L+S+Y G ++ ++KL W + +++V D++ +L+ +YA+R AK+GFAF Sbjct: 550 DHLDLLSKYTAGEGKSPKINKLNDGRWRKTMSSVSKQVEDISDDLIKLYAERQAKKGFAF 609 Query: 584 KHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 643 D + F F + T DQ ++IN + DM MDRL+ GDVGFGKTEVAMRAAF Sbjct: 610 SPDDASQEEFDSGFSYVETEDQIRSINEIKHDMELERPMDRLLVGDVGFGKTEVAMRAAF 669 Query: 644 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK 703 A+++ KQVAVLVPTT+LA+QH++NF +RF N+ V +E++SRF++ +QT+ILA++ +G+ Sbjct: 670 KAINDGKQVAVLVPTTVLAEQHFNNFTERFINFGVNVEVLSRFQTKTQQTEILAKLKKGR 729 Query: 704 IDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTL 763 +D++IGTH+LL DV+F DLGL+I+DEE RFGV+HKER+K ++ VD+LTLTATPIPRTL Sbjct: 730 VDLIIGTHRLLSKDVEFFDLGLMIIDEEQRFGVKHKERLKELKTQVDVLTLTATPIPRTL 789 Query: 764 NMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQ 823 +M+M G+RDLS+I TPP R V+T+V E + VVR+AILREI RGGQVYY+YN V+ I+ Sbjct: 790 HMSMLGIRDLSVIETPPTNRYPVQTYVMETNYGVVRDAILREISRGGQVYYVYNRVDTIE 849 Query: 824 KAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 + +L EL+PEARI HGQM E +LE + F ++VLV TTIIETG+DIP +NT+ Sbjct: 850 QKVSQLEELIPEARIGFIHGQMTEVQLENTLLAFIAGDYDVLVATTIIETGVDIPNSNTL 909 Query: 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGF 943 IE AD GL+QL+QLRGRVGRS+ AYA+ + K ++ ++KRLEAI +LG+GF Sbjct: 910 FIENADMMGLSQLYQLRGRVGRSNRVAYAYFMYRPEKILSEVSEKRLEAIKGFTELGSGF 969 Query: 944 ALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTE 1003 +A DL IRGAG LLG EQSG ++++GF LY +LLE A+ + + + + E Sbjct: 970 KIAMRDLSIRGAGNLLGSEQSGFIDSVGFDLYSQLLEEAIHT----KLGTSKQKRTSNVE 1025 Query: 1004 VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDI 1063 + L + + +P +I D ++ YKRI + EE++ EL+DRFG PD LL+I Sbjct: 1026 ISLELDAFIPAYYISDERQKIEIYKRIRQIDSREIYEELQEELVDRFGEYPDEVAYLLEI 1085 Query: 1064 ARLRQQAQKLGIRKLEGNEKGGVIEFAE--KNHVNPAWLIGLLQKQPQHYRLD---GPTR 1118 L+ A + K+E + + + +P L K + G Sbjct: 1086 GLLKHFADNALVEKIEKSRFEVTVTLEKVANTTYDPQDYFKALAKTSMKASVGEKYGKMT 1145 Query: 1119 LKFIQDLSERKTRIEWVRQFMRELE 1143 + + + + F+ EL Sbjct: 1146 FRLKIENRNSVVLLSEIMNFVEELS 1170 >UniRef50_C8NI79 Transcription-repair coupling factor n=3 Tax=Firmicutes RepID=C8NI79_9LACT Length = 1180 Score = 1100 bits (2845), Expect = 0.0, Method: Composition-based stats. Identities = 390/1149 (33%), Positives = 631/1149 (54%), Gaps = 32/1149 (2%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADW 73 E +L+ L+G+ + E+ +V++ P + A + ++E+S++ D+ V Sbjct: 25 ESQLVLGLSGSVKHLAESCAFEKLDKQLVIVTPTLLQATQTYEELSEWYDEDIVHLFPVE 84 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKG 133 E+L D D++S R+ TL L Q+G++IVP++ + + + P + ++ + G Sbjct: 85 ESLAADFSVVSPDVVSQRIRTLDFLSRGQKGIVIVPLSGIQKLLVPAALWKKSSIELAMG 144 Query: 134 QRLS-RDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 + DA +L GYR + V GE+A RG+++D++P+ E P RLDFFD E+DS+ Sbjct: 145 SEIESMDAFVERLVELGYRRENMVATPGEFALRGSIVDIYPLDQEYPLRLDFFDTEVDSI 204 Query: 193 RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQ------ 246 R F+ ++QR+++ +E + +LPA + P K A+ +++ ++ + Sbjct: 205 RAFNAETQRSMDVIEEVRILPATDLPLQKEAVWKAQTKIHALYDKDVKSSQSPERRDQVS 264 Query: 247 --------QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQAD 298 Q+ G +P+ + Y+ + E L Y + L+ + + Sbjct: 265 SIQQAIDAQLENGEIPSNLPYFLECIYPEKT-SLLDYVSKDAYLIIDDYARFIEKSKSLE 323 Query: 299 TLARFENRGVDPMRPLLPPQSLWLRVDELFSELK-NWPRVQLKTEHLPTKAANANLGFQK 357 A + + SL +L E + + + L + +A Sbjct: 324 EEAGYWKTHHIETGAIASGLSLVQDGRKLLKESPLKRTYLAIFQKGLGRLSLDAIHPITT 383 Query: 358 LPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE 417 +Q ++ + V+ V+ R + + + A I ++ Sbjct: 384 RTMTQFFSQMPMVKVEADRW-KKQGATVIVLVDDAKRAQKVEQTFADFDIKS--VISNGT 440 Query: 418 ASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAEL 477 + +M+G +GF A++ E +L + R ++ I+ +++ EL Sbjct: 441 VLEGQLQIMVGKMHNGFELPEDKFAILTERELFNKLTKRAPRNQ--KISNAERLKSYTEL 498 Query: 478 HIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAE 537 +G VVH+ HGVG Y GM TLE GGI +Y+ + Y + L+VPVS + L+ +Y Sbjct: 499 AVGDYVVHVNHGVGVYQGMETLEIGGIHQDYMSIHYQDGGNLFVPVSQIKLVQKYVSSDA 558 Query: 538 ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSF 597 + L+KLGG W++ ++K A K+ D+A EL+++YA+R A++G+AF D + Q F +F Sbjct: 559 KVPKLNKLGGTEWAKTKRKVAAKIEDIADELIELYAKRDAEKGYAFSRDTVEQQEFEQAF 618 Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 P+ T DQ +++ + DM + MDRL+ GDVG+GKTEVAMRA F AV + KQ AVLVP Sbjct: 619 PYTETQDQLRSVAEIKEDMQKDKPMDRLLVGDVGYGKTEVAMRAVFKAVMDGKQAAVLVP 678 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 TT+LA+QHY+NF RF+++P +I ++SRFRS KEQ + + ++ +G +DI+IGTH+LL D Sbjct: 679 TTILAEQHYENFVQRFSDYPFKIGLLSRFRSKKEQEETIKKLRKGSVDIVIGTHRLLSKD 738 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 V+F DLGLLIVDEE RFGV+HKER+K +++ VD+LTLTATPIPRTL+M+M G+RDLS+I Sbjct: 739 VQFLDLGLLIVDEEQRFGVKHKERLKQLKSQVDVLTLTATPIPRTLHMSMLGVRDLSVIE 798 Query: 778 TPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEAR 837 TPPA R V+TFV E + M +R+ I RE+ RGGQV+YLYN VE I+K A+ L LVP R Sbjct: 799 TPPANRYPVQTFVMEQNPMTIRDGIEREMARGGQVFYLYNRVETIEKKADELRVLVPGCR 858 Query: 838 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 897 + + HGQM E LE ++ F ++VLV TTIIETG+DIP NT+ IE AD+ GL+QL+ Sbjct: 859 VGVIHGQMSETTLENILFQFIEGEYDVLVTTTIIETGVDIPNVNTLFIENADYMGLSQLY 918 Query: 898 QLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGE 957 QLRGRVGR++ AYA+L+ K +T ++KRL+A+ +LG+GF +A DL IRGAG Sbjct: 919 QLRGRVGRTNRIAYAYLMYQPDKVLTEVSEKRLQAMRDFTELGSGFKIAMRDLSIRGAGN 978 Query: 958 LLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFI 1017 LLG++Q G ++++GF LY +LL AV + S E+ E++L++ + +P +I Sbjct: 979 LLGKQQHGFIDSVGFDLYSQLLSEAVLKKQGKEVKSDEE----TVEIDLQIDAYIPASYI 1034 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 D ++ YKRI S + EE+ + IDRFG PD L ++ ++ A ++ Sbjct: 1035 QDERQKIEMYKRIRSIDSVEAYEELLDDFIDRFGDFPDEVSALAEVGLIKHYANEINAVS 1094 Query: 1078 LEGNEKGGVIEFAE--KNHVNPAWLIGLLQKQPQHYRLDGPT---RLKFIQDLSERKTRI 1132 ++ + I A+ + + L ++ ++ + Sbjct: 1095 IKRKDNSVTITIAQPTATRLQGVPVFEALGPVKLPAQVANKGESLQILLNITQKPVDLWL 1154 Query: 1133 EWVRQFMRE 1141 E V+ F++ Sbjct: 1155 EQVKLFVKT 1163 >UniRef50_A6NQ58 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NQ58_9BACE Length = 1169 Score = 1099 bits (2842), Expect = 0.0, Method: Composition-based stats. Identities = 389/1163 (33%), Positives = 597/1163 (51%), Gaps = 36/1163 (3%) Query: 1 MPEQYRYTLPVKAGE-QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI 59 +PE R V G L+ A + A + + VV++ D A R+ ++ Sbjct: 5 IPEFQRLAAAVDGGGCPAAFTGLSPVHRAHMAAGLRQALGRSVVVLCADEAEADRMARDL 64 Query: 60 SQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCP 119 + T + V L E + + + RLS L L + +L+ + ++R P Sbjct: 65 AFLTGEQVRTLTAREFTFHHAAVVSRQWEHKRLSVLRALAAGECPLLVCTIEGALERTIP 124 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 + L + ++ G+ + L L +AGY +QV G++A RG +LD + + P Sbjct: 125 KTLLTQASQCLRVGESYDLNELADTLTAAGYTRCEQVEGVGQFALRGGILDFYSPAEDGP 184 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDK------------AAIELF 227 R++FF DE DS+ +FDV++QR +E ++ +LPA E + Sbjct: 185 IRVEFFGDEADSMGLFDVNTQRRVENRKSAEILPAAEVLPQFAPGGYAGLLEAMDGLIAR 244 Query: 228 RSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGD 287 + +D ++ + E +++++ ++ + L + + YFP + +++ + Sbjct: 245 AKRRKDGADLAKTLEEDRERLAENRSFPALDRYIALVYPH-MATAADYFPEDAVVLFSES 303 Query: 288 LETSAERFQADTLARFENRGVDPMRPLLPPQ--SLWLRVDELFSELKNWPRVQLKTEHLP 345 AER + E+ +L + +EL L+ WP V L Sbjct: 304 P-RVAERAKNYLWQLTEDAKALMEAGVLAGELSEFARTFEELCGVLEEWPVVYLDNFVGA 362 Query: 346 TKAANAN--LGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLA 403 L + A + + L ++ VV V SE R L LL Sbjct: 363 QYPRRPRTLLNLLCKQLPSYGASLETAVSDLSHYINENFSTVVL-VSSEQRALNLQALLR 421 Query: 404 RIKIAPQRIMRLDEAS-DRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSR 462 + L + + +G G A++ E + A ++ Sbjct: 422 EQGVKAAVDFLLHKLPAPGKAVIAVGGLSGGMEYPEARCAVLTEG-----QAAGVKKKKV 476 Query: 463 RTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVP 522 + + + + A+L +G VVH HG+GRY GM + GI +Y+ + YA LYVP Sbjct: 477 KAVTNRQKLGSYADLSVGDLVVHEHHGIGRYQGMVKMPVDGIQKDYVKIAYAGADVLYVP 536 Query: 523 VSSLHLISRYAGGAE---ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 + L L+S+Y G E E L KLGG W +A+ +A + V+D+A L+ +YAQR + Sbjct: 537 ATQLDLVSKYIGAGEDAQETKKLSKLGGADWEKAKTRAKKAVKDLAKGLIQLYAQRQRQP 596 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 GFAF D E + F + F + T DQ + I + DM P MDRL+CGDVG+GKTEVA Sbjct: 597 GFAFSPDSEWMREFEEQFEYTETDDQLRCIAEIKGDMEAPRPMDRLLCGDVGYGKTEVAF 656 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 RA V + KQ A+LVPTT+LA+QHY + + RFA +PV I+++SRFR+ + + L V Sbjct: 657 RAIMKCVLDGKQAAILVPTTVLARQHYLSAKQRFAKYPVEIDVVSRFRTPAQMKETLRRV 716 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 G+ID+LIGTH+L Q DVKFKDLGLL++DEE RFGV HKE++K M VD+LTL+ATPI Sbjct: 717 EAGQIDLLIGTHRLFQKDVKFKDLGLLVIDEEQRFGVAHKEKLKEMSRQVDVLTLSATPI 776 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTLNMA+SG+RD+S + PP+ R V+T+V E+D V+ +A+ RE+ RGGQVYYL+N V Sbjct: 777 PRTLNMALSGIRDMSTLEEPPSDRQPVQTYVLEHDWGVLFDAMRRELERGGQVYYLHNRV 836 Query: 820 ENIQKAAERLAELVPE-ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 E I + A R+ E++ E + + HG+M + EL VM +VLVCTTIIETGIDI Sbjct: 837 ETITRTAARIREMLGEDVTVGVAHGKMSQEELNDVMTRMSEGEVDVLVCTTIIETGIDIS 896 Query: 879 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLED 938 ANT+IIE AD GLAQLHQ+RGRVGRS +AYA+L K ++ A KRL AI + Sbjct: 897 NANTLIIEDADKMGLAQLHQIRGRVGRSSRRAYAYLTFRRGKVLSEVASKRLGAIREFAE 956 Query: 939 LGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLT 998 G+GF +A DLEIRGAG +LG EQSG + ++G+ LY++LLE AV + + Sbjct: 957 FGSGFKIAMRDLEIRGAGNVLGPEQSGFLMSVGYDLYLKLLEEAVLEERGEKAQ-----I 1011 Query: 999 SQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPAR 1058 + +L + + +PD ++P R+ Y+RIA+ ++E + +++ ELIDR+G P P Sbjct: 1012 PAECSADLSVAASIPDRYVPSPEQRMDLYRRIAAIRSEEDADDLTDELIDRYGDPPRPVN 1071 Query: 1059 TLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTR 1118 L+ +A +R A GI ++ + + + L GL K + Sbjct: 1072 NLIAVALMRADAAACGITEISQKGLSLLFYLDGADLRRVSALCGL-DKYRSRLLFSAGEK 1130 Query: 1119 LKFIQDLSERKTRIEWVRQFMRE 1141 L + ++ R+ + E Sbjct: 1131 PYLSLRLKKGDDPLKLGRKLVEE 1153 >UniRef50_Q6ARL4 Related to transcription-repair coupling factor n=2 Tax=Desulfobulbaceae RepID=Q6ARL4_DESPS Length = 1184 Score = 1097 bits (2838), Expect = 0.0, Method: Composition-based stats. Identities = 420/1164 (36%), Positives = 646/1164 (55%), Gaps = 46/1164 (3%) Query: 6 RYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ 65 + + L L G++ A L A++A+ + I PD + + F+++ Sbjct: 5 NIFAQIDKKKAITLSGLRGSSTALLAAQLAKNSSC--CCIVPDDHLIPIVVQNLQLFSEK 62 Query: 66 MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ-RGVLIVPVNTLMQRVCPHSFLH 124 +++ E PY + SP Q + ++RL++LYQ + +++ + L++RV P L Sbjct: 63 TILSYPSHEIPPYTALSPDQKVTATRLASLYQAANSEHPTIIVTSIEALLRRVIPKELLS 122 Query: 125 GHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG--------S 176 ++ G+ RD L T L GY V G++A RG ++D++P Sbjct: 123 ARVELIMAGEDCDRDGLITSLLLLGYDKVSLTKNVGDFAVRGGIIDIYPPAFALENGQLH 182 Query: 177 ELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKA------AIELFRSQ 230 E P RLDFF D ++SLR FD SQR+ ++E LLP +F D + I Sbjct: 183 EGPLRLDFFGDTVESLRTFDPVSQRSTGKLEEAILLPTRDFIIDTSAKKSLQEIGTALQT 242 Query: 231 WRDTFEVKRD-PEHIYQQVSKGTLPAGIEYWQPLFFS-EPLPPLFSYFPANT--LLVNTG 286 D + + + + ++++ G AGIE + PLFF + L LF + +T +L+++ Sbjct: 243 RADKYSWNEELTQTMLEKINTGQGIAGIESFLPLFFPGKNLSSLFDFLTEDTTMVLMDSF 302 Query: 287 DLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPT 346 ++ S + P LPP+ ++L +E+ +L ++ +V+L Sbjct: 303 AIQQSMRMSYQRIEQNYLEVQ-GAGTPALPPKEIFLSPEEIKEKLSSFRQVRLSDIVSEQ 361 Query: 347 ---KAANANLGFQKLPDLAVQAQQKAPLDALRKFLETF---DGPVVFSVESEGRREALGE 400 + N ++A + ++ L L + + + +V SE + L E Sbjct: 362 DNATSYNTQSHGLLKQEIARRRAKEGILVPLIERIRQWQEEGHRIVICCRSEKHTKNLAE 421 Query: 401 LLARIKIAPQRIMRL-------DEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGER 453 +L R + A R L GF + +I ES+L G+ Sbjct: 422 MLERHHFNISVVPSPLSLPDLQKRAEQREILLCDHPLSEGFSLPEQGWDIISESELFGQM 481 Query: 454 VARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTY 513 ++ + EL+ G VVH +HG+G Y G+ + IT +++ + Y Sbjct: 482 RLGSKKSKSKKWAEPI---EFTELNEGDIVVHRDHGLGIYRGLNAIRIQEITNDFMSIEY 538 Query: 514 ANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYA 573 +D KLYVPV L+L+SRY G ++ + KLG W +K E+V VA ELL+IYA Sbjct: 539 RDDDKLYVPVDRLNLVSRYQGISDREPRIDKLGSQNWRNTTKKVKEEVWKVAHELLEIYA 598 Query: 574 QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFG 633 +R K G AF + YQ +SFPF+ T Q AIN+VL D+ MDRLVCGDVG+G Sbjct: 599 KRELKAGRAFAPPGQLYQELEESFPFDETAGQLAAINSVLDDLTDANPMDRLVCGDVGYG 658 Query: 634 KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT 693 KTEVA+R AF V++ Q A+LVPTT+LA+QH FR+R N+P+RIE ++RFR+AKEQ Sbjct: 659 KTEVAIRGAFKVVEDGAQAAILVPTTVLAEQHLKTFRERLQNFPLRIECLNRFRTAKEQR 718 Query: 694 QILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILT 753 +I+ ++A GKIDI+IGTH+LL DV+FKDLGLLI+DEEHRFGV HKER++ MRA VDILT Sbjct: 719 EIVKDLAAGKIDIVIGTHRLLSKDVQFKDLGLLIIDEEHRFGVAHKERLRKMRAEVDILT 778 Query: 754 LTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVY 813 LTATPIPRTL M++ +RDLS+I++PP +R VKTFV E D +V++EAI RE+ R GQ + Sbjct: 779 LTATPIPRTLQMSLLSIRDLSVISSPPEQRRPVKTFVAEDDDLVIKEAISRELRRKGQTF 838 Query: 814 YLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 873 +++N V++I + A ++ +LVP+ARIA+ HGQM +ELE +M F ++ +VLV TTIIE+ Sbjct: 839 FVHNRVKSIYQIANKIEKLVPDARIAVAHGQMDTKELENIMVSFVNKEVDVLVATTIIES 898 Query: 874 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAI 933 G+DIP+ANT+II RAD+ GLA+++QLRGRVGRS Q++A+LL P +++ D+++RL A+ Sbjct: 899 GLDIPSANTMIINRADNLGLAEMYQLRGRVGRSSTQSFAYLLVPSLDSISKDSRERLRAL 958 Query: 934 ASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPS 993 +LG GF LA +DL+IRG G LLG QSG++ IG+ LY++LL+ V LKA + Sbjct: 959 MECNELGGGFKLAMNDLQIRGGGNLLGISQSGNIAAIGYDLYLDLLQKTVADLKAQKLSQ 1018 Query: 994 LEDLT--SQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASA-KTENELEEIKVELIDRF 1050 E E+ L+ + +P ++I D++ R Y+RIA+ + + +I+ EL DR+ Sbjct: 1019 EEQGIYDDLDPEINLQHSAFIPSNYITDIDQRYIVYRRIAAMSRGMADFADIRDELSDRY 1078 Query: 1051 GLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQH 1110 G +P TLL + ++++ +L + KLE V+ F + V P LI + + Sbjct: 1079 GRIPAETETLLKMIEVKRELIELRVTKLERGRGNIVLTFQDDTPVQPVKLIAFIAESKAT 1138 Query: 1111 -----YRLDGPTRLKFIQDLSERK 1129 +L RL E+ Sbjct: 1139 KKQAAPKLTQDGRLIVFMHSEEKD 1162 >UniRef50_O52236 Transcription-repair-coupling factor n=6 Tax=Myxococcaceae RepID=MFD_MYXXA Length = 1201 Score = 1097 bits (2838), Expect = 0.0, Method: Composition-based stats. Identities = 437/1176 (37%), Positives = 660/1176 (56%), Gaps = 40/1176 (3%) Query: 4 QYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT 63 + ++AG++ L GAA ++A + P+V +A D + A L ++S F Sbjct: 31 FAQVVDELRAGQRVRTQGLKGAARGHVLARLHGALRAPLVCVAVDEEAADALAADLSFFL 90 Query: 64 DQ-------MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM-QRGVLIVPVNTLMQ 115 V+ L E LPYD SP ++ RL L+ L + L++ V L + Sbjct: 91 GGQGSLLAPRVLRLPADEVLPYDEVSPDAAAVTERLGALFHLGQGTRFPALVLSVRALHR 150 Query: 116 RVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175 +V P + + A + GQ RD+L +L GY++ V + G ++ RG LLD+F Sbjct: 151 KVLPLAVMRALAARVAVGQDFDRDSLARRLVRMGYQNSPLVEDVGTFSVRGDLLDVFSPL 210 Query: 176 SELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF 235 + P RL+FF D I+S+R FD SQRT++ ++ ++L+PA E S R Sbjct: 211 YDKPVRLEFFGDTIESIRAFDPQSQRTVDALKEVDLVPAREVLLTDETRPRAESAARAVA 270 Query: 236 EVKR----DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF----PANTLLVNTGD 287 + + +G G+E P FF + L +F + P ++ Sbjct: 271 DRINLPTIKLREQLDALREGLPGFGMEGLLPGFFEDGLSTVFDFLRDWSPEAPVIYLDDP 330 Query: 288 L-ETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQ---LKTEH 343 L + A + L R + PP +L +++ ++++ ++ L Sbjct: 331 LGQDRAADTLWEELERSHGAAEARQELICPPLEHFLSREDVNQRMQSFRVLEGGGLSLAQ 390 Query: 344 LPTKAANANLGFQK--LPDLAVQAQQKAPLDALRKFLETFDG-PV--VFSVESEGRREAL 398 + + G + + ++ L L + LE + V V + + + + L Sbjct: 391 TERPPVHFSFGGTQDLREAILAHHGEEGALSPLVERLERWRELRVACVVACGTLSQADRL 450 Query: 399 GELLARIKIAPQRIMRLDE------ASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGE 452 LL + + E +L G HGFVD LA++ + ++ G Sbjct: 451 KRLLMDRNVMVKVHTEPLEDAVALYEPSIRAHLFTGEVSHGFVDGPGGLAVLADEEIFGA 510 Query: 453 RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLT 512 R RR + S++ + +L G +VH + G+GRYAG+T +E G+ G++L+L Sbjct: 511 RARRRPKRSKKLDAFGSG---FGDLKEGDLIVHTDFGIGRYAGLTKMEVNGVPGDFLVLE 567 Query: 513 YANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIY 572 YA K+Y+PV + LI +++GG L KLG +W + +++ E++ +AAELL I Sbjct: 568 YAGRDKIYLPVGRMRLIQKFSGGDPTQVQLDKLGTTSWEKTKKRVKEQLLKMAAELLQIA 627 Query: 573 AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632 A R A G AF + F F FE TPDQA+AI VL+DM +P MDRLVCGDVG+ Sbjct: 628 AARKAHPGHAFSAPDRYFAQFEADFEFEETPDQAKAIEDVLADMQKPEPMDRLVCGDVGY 687 Query: 633 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ 692 GKTEVAMRAAF A + KQVAVLVPTT+LAQQH+ +F+ RFA++PV +E+IS + A E Sbjct: 688 GKTEVAMRAAFKAALDRKQVAVLVPTTVLAQQHFLSFKKRFADYPVTVEVISGLKKAPEV 747 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 +IL EGK+DILIGTHKLL +V FK+LGL+IVDEE RFGV+ KE +K R+ +D+L Sbjct: 748 REILKRAKEGKVDILIGTHKLLGGEVAFKELGLMIVDEEQRFGVKQKESLKKWRSQIDVL 807 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 TLTATPIPRTL+M+MSG+RD+SIIATPP R A++TFV +Y+ VV+EAI RE+ RGGQV Sbjct: 808 TLTATPIPRTLHMSMSGVRDMSIIATPPQDRRAIRTFVMKYEDTVVKEAIEREVARGGQV 867 Query: 813 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 ++++N VE++ +L LVP+ I + HGQM E +LE+VM F +++ VL+CT+IIE Sbjct: 868 FFVHNRVESLPSIETQLRALVPQVSIGVAHGQMGEGQLEKVMLAFTEKKYQVLLCTSIIE 927 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 +GIDI +ANT+I+ RAD FGLAQL+QLRGRVGRS +AYA+LL P +A+T DAQ+RLE Sbjct: 928 SGIDISSANTMIVNRADQFGLAQLYQLRGRVGRSKERAYAYLLVPSRRAVTKDAQRRLEV 987 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP 992 + + +LGAGF++A+HDLEIRGAG LLG++QSG++ IGF +Y +LLE AV ++ Sbjct: 988 LQNFTELGAGFSIASHDLEIRGAGNLLGDKQSGAIAEIGFDMYAQLLEEAVAEMQG---- 1043 Query: 993 SLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGL 1052 + +V L MP+L+PDD++ DV+ RL FYKR + A +E+ +++ EL+DR+G Sbjct: 1044 -QPPKVQIEPDVTLPMPALIPDDYVSDVHQRLVFYKRFSQASHPDEVTDLRAELVDRYGE 1102 Query: 1053 LPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYR 1112 PD L ++ L+ + L +R LE V+ ++ + GL+Q+ YR Sbjct: 1103 APDEVDHLSELTLLKIDMRDLRLRGLEVGTTRLVVTLGADALLDGPKVAGLVQRSKGVYR 1162 Query: 1113 LDGPTRLK-FIQDLSERKTRIEWVRQFMRELEENAI 1147 L +L + + I ++ +R+L A+ Sbjct: 1163 LTPDMKLIARAPQGASGQDLISEAKKVLRDLSHCAL 1198 >UniRef50_B0MQZ9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MQZ9_9FIRM Length = 1175 Score = 1096 bits (2835), Expect = 0.0, Method: Composition-based stats. Identities = 361/1127 (32%), Positives = 596/1127 (52%), Gaps = 26/1127 (2%) Query: 16 QRLLGELTGAACATLVAEI-AERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN-LADW 73 L+ L+ A +A + E+ PV++I +A +L ++I+ Sbjct: 28 PLLVTGLSHIHKAHFLASLCYEKLPSPVLVITESEASAAKLTEDINTMCGDTAAYQFPAS 87 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKG 133 + D+ + Q+ R+ TL + + ++I +Q P L H + +K G Sbjct: 88 DLTLADTEAQSQEYEYKRIETLSAALSGKARLIISSSEAAVQLTVPKDVLEKHTVTLKAG 147 Query: 134 QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193 + D L T L SAGY D + G+++ RG+L D++P+ S+ P R++ + DEID++ Sbjct: 148 DEIKLDELATMLVSAGYTRCDMIEGKGQFSFRGSLADIYPVSSDYPVRIELWGDEIDTVA 207 Query: 194 VFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF--------EVKRDPEHIY 245 FD+D+QR ++ V+++++ P E ++ + + E + Sbjct: 208 SFDIDTQRRIDTVKSVSITPCGETIFEEGVLSGTLQTLLEKTEKNKKKNDEAAKRIRRDI 267 Query: 246 QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFEN 305 ++ G + + PL + EP +F Y A+TL+V+ A + Sbjct: 268 ARLRDGISVCCLNRYFPLCYKEP-GSIFDY--ASTLIVSESFTAAEAAKGAISAHLEDLK 324 Query: 306 RGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANL-GFQKLPDLAVQ 364 + + E +KN R+ + T +++ + A Sbjct: 325 LLTEDGVLCKGLDRYLMSKAEYQDTVKNKVRLYMDTFIRGGGIDLSDILKVDSIQLSAWS 384 Query: 365 AQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY 424 + K + L + V+F ++ + L E L + Sbjct: 385 GEYKMLFEELDNYSRNGYSCVIF-GGTDKAAKILAEDLHDKGYKADYAKNPKKFYLGRIT 443 Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 ++ G GF +A++ + + ++ IR+L+++ G VV Sbjct: 444 VVEGILSAGFEYPEEKIAVLT----RTSASSSKTSAPKKKFKKGAQIRSLSDISQGDLVV 499 Query: 485 HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN-APLH 543 H +G+G + G+ L A ++ +Y+ + YA LYVPV+ L LISRY G + + L+ Sbjct: 500 HGSYGIGVFEGVQKLTADKVSKDYIKIKYAGTDVLYVPVTQLDLISRYIGSGDADTVRLN 559 Query: 544 KLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTP 603 KLG D W +A+ KA +++A EL+++Y++R +GFAF D EQ +F D F + T Sbjct: 560 KLGTDTWKKAKTKAKAATQEMAKELIELYSRRMKAKGFAFSPDTEQQHIFEDHFSYVETD 619 Query: 604 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQ 663 DQ + I + DM + M+RL+CGDVGFGKTEVA+RAAF + + KQ A+LVPTT+LA Sbjct: 620 DQLRCIEEIKHDMMRTAPMERLLCGDVGFGKTEVALRAAFKCIGDGKQCAILVPTTVLAW 679 Query: 664 QHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 723 QHY R + +R+E++SRFR+AKEQ IL ++ EG++D+++GTH+L+Q DVKFKDL Sbjct: 680 QHYQTVLKRMEGFDIRVELLSRFRTAKEQKIILKKLEEGELDLVVGTHRLVQDDVKFKDL 739 Query: 724 GLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 783 GL+I+DEE RFGV KE++K NVD+LTL+ATPIPRTLNMAMSG+RD+S+I TPP R Sbjct: 740 GLVIIDEEQRFGVNDKEKLKEAFTNVDVLTLSATPIPRTLNMAMSGIRDMSVIETPPGDR 799 Query: 784 LAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHG 843 + T+V E+D V+ +AI +E+ R GQVYY++N +E+I A + +VPEA I I HG Sbjct: 800 HPITTYVVEHDRGVIAQAINKELRRNGQVYYVHNRIESIYSCAADIHSMVPEANIGIAHG 859 Query: 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903 +M E EL V +VLVCTT+IETG+D+P NT+IIE AD GLAQLHQLRGRV Sbjct: 860 RMSEEELLNVWRRLIEGEIDVLVCTTLIETGVDVPNCNTLIIENADCMGLAQLHQLRGRV 919 Query: 904 GRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQ 963 GR++ +AYA+ K ++ A KRL+AI G+GF +A DLEIRGAG +LG+ Q Sbjct: 920 GRTNRRAYAYFTFRRGKVLSEIATKRLDAIREFTRFGSGFRIAMKDLEIRGAGSVLGQSQ 979 Query: 964 SGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTR 1023 SG + ++G+ +Y++LL A+ + + + +++R+ + +P+ +I + R Sbjct: 980 SGHLASVGYDMYIKLLNEAILEQQGK-----APEITPECLIDIRIDAFIPEKYISNQAQR 1034 Query: 1024 LSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 + Y++IA + + + ++ ELIDR+G +P L+++A+LR+ AQK+ + ++ + Sbjct: 1035 VDCYRKIAMIENDEDAYDVTDELIDRYGDVPRAVEGLIEVAKLRRIAQKMHLTEIIQSGD 1094 Query: 1084 GGVIEFAEKNHVNPAWLIGLLQKQPQHYRLD-GPTRLKFIQDLSERK 1129 + + + + + K + L+ + F + +++ Sbjct: 1095 VMIFYPEKTDKKTMERVSAVGGKFGKDMMLNIATDKPNFRVNGTDKH 1141 >UniRef50_B5CPD5 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=B5CPD5_9FIRM Length = 1117 Score = 1095 bits (2832), Expect = 0.0, Method: Composition-based stats. Identities = 382/1153 (33%), Positives = 585/1153 (50%), Gaps = 69/1153 (5%) Query: 5 YRYTLPVKAGEQRLLG--ELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 Y+ + + + +L + L+ +++ V++ + A + ++E Sbjct: 14 YQEIVQKRGKAEGILQIAGCVSSQKTHLMYALSDGFEYR-VIVFSSEEKAKQAYEEYK-M 71 Query: 63 TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLP---TMQRGVLIVPVNTLMQRVCP 119 ++ + L Y + + R+ L +L + +I + + + Sbjct: 72 LEENTFLYPAKDLLFYHADIKGAALTGKRMEVLKKLTEKKNREPVTVITTADAFLDGLPS 131 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 L + ++ G + L+ +L GY Q+ G++A RG +LD++P+ E+P Sbjct: 132 KEKLWESRIEIEAGAVIDFQKLQEELVHLGYERESQIEGPGQFAVRGGILDVYPLTEEIP 191 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR 239 R++ + DEIDS+R FDV+SQR++E +E + + PA E K Sbjct: 192 VRIELWGDEIDSIRSFDVESQRSVENMEKVVIYPATENVEKK------------------ 233 Query: 240 DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADT 299 E YFP L + E +A Sbjct: 234 ---------------------------EQAVSFSEYFPKEESLFFFDEPVRLQETLEAVE 266 Query: 300 LARFE--NRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHL--PTKAANANLGF 355 F + + + E+ + + L T Sbjct: 267 KEYFHSFESRKNAGMTEEADEIRVFQTKEIIEKFNTRYGIGLTTLETRCGGFKVRDVYSI 326 Query: 356 QKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMR- 414 Q + L+K L+ V+ S R + L E L ++ Sbjct: 327 QAAGVNPYNNSFEMLTQDLKK-LKRQGYRVILVSGSRTRAKRLAEDLRDYDLSSFYSEDM 385 Query: 415 LDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNL 474 + ++ G G+ + +I ESD+ G+R + RR + I+ Sbjct: 386 VRTVRPGEIMVVYGCVAEGYEYPMLKFMVISESDIFGKRK----KKRRRKVYEGQKIQEF 441 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG 534 AEL G VVH HG+G Y G+ +E +T +Y+ ++YA+ LY+ + + LI +YAG Sbjct: 442 AELKPGDYVVHENHGLGVYQGIEKVEVDKVTRDYMKISYADGGILYILATQMDLIQKYAG 501 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 + L+KLG W++ + + + V+ +A +L+++YA R EGF + D + F Sbjct: 502 ADAKPPKLNKLGTPQWNKTKSQVKKAVQVIAQDLVELYAVRQQTEGFVYSPDTVWQKEFE 561 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 + FPFE T DQ +AI DM MDRL+CGDVG+GKTEVA+RAAF AV + KQV Sbjct: 562 EMFPFEETEDQLRAIEDTKKDMESTKVMDRLICGDVGYGKTEVAIRAAFKAVQDGKQVVY 621 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 LVPTT+LAQQHY+ F R ++PVRI+++ RFR+ +Q + + ++ +G +DI+IGTH++L Sbjct: 622 LVPTTILAQQHYNTFIQRLKDFPVRIDLLCRFRTPAQQKKTIEDLKKGLVDIVIGTHRVL 681 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 DV +KDLGLLI+DEE RFGV HKE+IK MR N+D+LTLTATPIPRTL+M++ G+RD+S Sbjct: 682 SKDVTYKDLGLLIIDEEQRFGVTHKEKIKKMRENIDVLTLTATPIPRTLHMSLIGIRDMS 741 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 ++ P R+ ++T+V E++ ++REAI RE+ RGGQVYY+YN VE+I A R+ +LVP Sbjct: 742 VLEEAPMDRMPIQTYVMEFNDEMIREAIERELSRGGQVYYVYNRVEDIADVAGRVQKLVP 801 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 A ++ HGQM ERELE +M DF + +VLV TTIIETG+DI ANT+II+ AD FGL+ Sbjct: 802 GASVSFAHGQMSERELEDIMYDFINGEIDVLVSTTIIETGLDIANANTMIIQDADRFGLS 861 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QL+QLRGRVGRS AYA+LL K + A+KRL AI DLG+G +A DLEIRG Sbjct: 862 QLYQLRGRVGRSSRMAYAFLLYRRDKLLKEVAEKRLAAIREFTDLGSGIKIAMRDLEIRG 921 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPD 1014 AG LLGE QSG M +G+ LY ++L AV LK +E T ++L + + +P+ Sbjct: 922 AGNLLGEAQSGHMAAVGYDLYCKMLNEAVKELKGEKEEDQ-----FTTTMDLNIDAFIPE 976 Query: 1015 DFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 +I + +L YKRIA+ TE E++++ ELIDRFG +P + LL IA L+ A Sbjct: 977 SYIKNEYQKLDIYKRIAAITTEEEMDDMTEELIDRFGDIPKKVQQLLHIAALKSLAHAAY 1036 Query: 1075 IRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFI--QDLSERKTRI 1132 + +E EK ++P + GLLQ+ F + K Sbjct: 1037 VTAVEQKGSDFKFTLYEKAKLDPQKIPGLLQRYGNKLVFRAEEPPYFFYQKKGRSGKETG 1096 Query: 1133 EWVRQFMRELEEN 1145 E Q +R++ E+ Sbjct: 1097 EDTIQLLRKILED 1109 >UniRef50_C0E926 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0E926_9CLOT Length = 1152 Score = 1094 bits (2831), Expect = 0.0, Method: Composition-based stats. Identities = 381/1153 (33%), Positives = 595/1153 (51%), Gaps = 31/1153 (2%) Query: 1 MPEQYRYTLPVKA-GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI 59 +P+ + V A G ++ L+ A + ++E P++++ D NA +L D+ Sbjct: 11 LPQFRQLEKTVAADGLPAMVIGLSSVHKAHFLYRLSESSDLPLLVLTDDEANAKKLSDDY 70 Query: 60 SQF-TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVC 118 +Q ++ + + ++ RL+ L ++ Q V+ + +Q Sbjct: 71 NQMAGGELSAVYPAKDFTFRPIETVSREYEYIRLNVLSRIVNRQVKVVFAGICAAVQYTL 130 Query: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL 178 P S L ++ GQ L L L AGY QV +Y+ RG ++D FP Sbjct: 131 PPSRLLEATHTIRAGQELPVGELVGMLAGAGYTRRAQVDGSAQYSVRGGIVDFFPTSGSE 190 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTD-KAAIELFRSQWRDTFEV 237 P R++F+ DEID++ F++DSQR VE I + PA E + + + Sbjct: 191 PVRVEFWGDEIDTISFFELDSQRRTTPVEEIEISPATEIIFSSPEQLREGINGLIRSLGS 250 Query: 238 KRDPEH-------IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG-DLE 289 + +++ G + I+ + PL + + LF YF + L V+ DL+ Sbjct: 251 SPQADAAKLKLSNDIKRIDGGLDLSNIDKYIPLAY-DRPATLFDYFESPLLFVSEWSDLK 309 Query: 290 TSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAA 349 SA ++ ++ S + ++ V T Sbjct: 310 ESARAYEFQYQEDL-KILLEEGELCKGLDSFVKPFASVSEQIAQGKTVFFDTFAHANHDL 368 Query: 350 NAN--LGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKI 407 + + + K + L L V+ ++ + L L + I Sbjct: 369 RLKELITVNAMQTSSWSGDLKLLCEDLAD-LRAQSYSVIIMTGTQKAADVLAHDLEKEGI 427 Query: 408 APQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINP 467 ++ E + Y++ G GF +ALI + + + + Sbjct: 428 PSATVVPTGELTPGVVYVLAGMLSSGFEYPAAKVALITHARI------QNLSKRKVKRRK 481 Query: 468 DTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLH 527 IR+L+++++G VVH+ HG+G + G+ L G++ +Y+ + Y LYVPV+ L Sbjct: 482 GEEIRSLSDINVGDFVVHVSHGIGVFEGIANLNLQGVSKDYIKIKYKGSDVLYVPVTQLD 541 Query: 528 LISRYAGGAEE-NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 ++S+Y G E L++L D W++ R + + V ++A EL+ +YA+RA +G+AF D Sbjct: 542 MVSKYIGPKENGAVRLNRLNSDEWNKTRSRVKKAVAEMADELIRLYAERAKTKGYAFSKD 601 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 E + F D F +E T DQ + I + +DM M+RL+CGDVGFGKTEVA+RAAF V Sbjct: 602 NEWQREFEDHFEYEETEDQLRCIEEIKADMESDRPMERLLCGDVGFGKTEVALRAAFKCV 661 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 + KQ A+L PTT+LA QHY R N+PV IE++SRFR+ KEQ Q+L ++ G++DI Sbjct: 662 LDSKQCAILCPTTILAWQHYQTALARIGNFPVNIELLSRFRTPKEQKQVLQKLRTGQVDI 721 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 +IGTH+L+Q DV F DLGL I+DEE RFGV HKER K M VD+LTL+ATPIPRTLNMA Sbjct: 722 IIGTHRLVQKDVAFSDLGLAIIDEEQRFGVTHKERFKEMFRGVDVLTLSATPIPRTLNMA 781 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 MSG+RD+S+I P R ++T+V E+D V+ +AI RE+ R GQVYY++N VE+IQ A Sbjct: 782 MSGIRDMSVIEQAPQDRHPIQTYVIEHDYGVIADAIKRELRRDGQVYYIHNRVESIQSCA 841 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 ++++LVP+ARI I HG+M E EL R+ ++LVCTTIIETG+D+ NT+IIE Sbjct: 842 AQISKLVPDARIGIAHGKMGENELSRIWQQLMEHEIDILVCTTIIETGVDVSNCNTLIIE 901 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 AD+ GL+QL+QLRGRVGRS +A A+ K +T A KRL AI G+GF +A Sbjct: 902 DADNMGLSQLYQLRGRVGRSKRRASAYFTFRRGKVLTEIASKRLSAIREFTKFGSGFRIA 961 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVEL 1006 DLEIRGAG +LGE Q G ME +G+ +Y+ LL +AV + + ++ ++L Sbjct: 962 LRDLEIRGAGSILGERQHGHMEAVGYDMYLRLLSDAVSEKQGVK----PPTKVEECLIDL 1017 Query: 1007 RMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARL 1066 M + +P+D+I ++ RL Y++IAS ++ + E+ ELIDRFG P + L+DIA L Sbjct: 1018 PMEAHIPEDYIENLAQRLDIYRKIASLESHEQSLELIDELIDRFGDPPKSVQGLIDIALL 1077 Query: 1067 RQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLS 1126 R A KLG ++ V+ F KN ++ L ++ + + Sbjct: 1078 RAAAAKLGFTEISQKG--VVMLFFPKN-LDMEVASRLAAHLKGRVMVNAGQKPHIAVKMK 1134 Query: 1127 ERKTRIEWVRQFM 1139 ++ +R+ + Sbjct: 1135 -GSKPLDVIREVL 1146 >UniRef50_A9B116 Transcription-repair coupling factor n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B116_HERA2 Length = 1207 Score = 1094 bits (2829), Expect = 0.0, Method: Composition-based stats. Identities = 414/1194 (34%), Positives = 638/1194 (53%), Gaps = 61/1194 (5%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 P+ + R + + +A +VA IA R +LIA A+R+H +++ Sbjct: 20 PQLKAALAAAQPNTTRTITPVP-SAARRVVAAIATRQHRSSLLIAATPDAAVRMHADLTA 78 Query: 62 FTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 + + VM +TLPY+ S I++ RL+ L +L + ++ V LMQ Sbjct: 79 WLGENVMLFPPTDTLPYEHMSADIGIVAQRLAVLGRLHASEPICVVASVKALMQPTMTPE 138 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 ++++G + L S GYR + G+ + RG ++D+FP S+ P R Sbjct: 139 EFQFATRLLRQGDQHDPRKLLAHWVSLGYRVGPTAEQPGDLSQRGGIIDIFPPTSDRPIR 198 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDK--AAIELFRSQWRDTF--EV 237 L+F+DD+++SLR++D SQR+ + V I + PAHE P + AI+ + EV Sbjct: 199 LEFWDDQLESLRIYDPISQRSDKRVRQIQISPAHEIPFWRRTEAIKRIEQLQIASLRREV 258 Query: 238 KRDPEHIYQQVSKGTLPAGIEYWQPLF---FSEPLPPLFSYFPANTLLVNTGDLETSAER 294 + + + + G G ++ P F L+ + PA+ +++ + + E +A+ Sbjct: 259 QHEWATAREHLETGQRFEGRAFYAPFFRTPHEAAEAGLWQHLPASAIILLSEEHELNAQG 318 Query: 295 FQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSE-LKNWPRVQLKTEHLPTKAANANL 353 + + A L P L ++ W + L + + ++ + Sbjct: 319 IELQSHADLVRSTQIENNELPPDFPFPLIAWTFIRRSIQRWSCLNLSNQPIADDQNDSFV 378 Query: 354 GFQKL--PDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQR 411 + Q + LR+ L + V+ S + L EL ++ +A Sbjct: 379 HEINTFSQAASYGGQTDRLFEDLRERLVGGERVVLISP----QASRLRELASQHNLALIG 434 Query: 412 IMRLDEASD-----RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARR-RQDSRRTI 465 + D + G GF L ++ +S++ G + R +R+ Sbjct: 435 EEDGPDVDDPPFQSGTIIIRHGNLSGGFSSDPLRLTILSDSEIFGWQQRRALSTRARKQR 494 Query: 466 NPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSS 525 L L +G VVH+EHG+ +Y G++ +EA G E+L+L YA+ KLYVPV Sbjct: 495 TESDRTAFLQSLKVGDYVVHIEHGIAQYEGLSRIEASGAEREFLVLRYASGDKLYVPVDQ 554 Query: 526 LHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKH 585 + +SRY G E L +LG W RA++K V ++A ELLD+YA R EGFA+ Sbjct: 555 VDRVSRYIGAGEGKPTLTRLGTSDWERAKRKVRADVEELATELLDLYAARQLVEGFAYSS 614 Query: 586 DREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA 645 D + DSFP+ T DQ +AI V SDM MDRL+CGDVGFGKTEVA+RAAF A Sbjct: 615 DTSWQRELEDSFPYTETDDQLRAIEEVKSDMENTRPMDRLICGDVGFGKTEVALRAAFKA 674 Query: 646 VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID 705 V + +QVAVLVPTT+LAQQH++ F R +PVRIEM+SRFRSA +Q I + +G+ID Sbjct: 675 VQDGRQVAVLVPTTVLAQQHFETFSRRMQMFPVRIEMLSRFRSASQQKSITERIVKGEID 734 Query: 706 ILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNM 765 I++GTH++L SD+ FK LGL+I+DEE RFGV+ KER+K +R +D+LTLTATPIPRT++M Sbjct: 735 IVVGTHRILSSDIHFKQLGLVIIDEEQRFGVKDKERLKKLRHEIDVLTLTATPIPRTMHM 794 Query: 766 AMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKA 825 A+SG+RDLS+I TPP R+ +KT+V+ Y+ M+VR+AILRE+ R GQ Y+++N V++I Sbjct: 795 ALSGIRDLSVIDTPPDDRMPIKTYVQPYNEMLVRDAILRELGRNGQAYFVHNRVQSIYTV 854 Query: 826 AERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 885 A RL +LVPEARI +GHGQM E+ LE+V+ F F+V VCTTIIE+GID+P+ANT+II Sbjct: 855 ANRLQKLVPEARIGVGHGQMPEKALEKVILQFFEGLFDVFVCTTIIESGIDVPSANTMII 914 Query: 886 ERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFAL 945 + A +GLAQL+QLRGRVGRS + YA++ KAM +AQKRLEAI +LGAGF + Sbjct: 915 DDATTYGLAQLYQLRGRVGRSTQRGYAYMFYNPTKAMGEEAQKRLEAIQEATELGAGFRI 974 Query: 946 ATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDL-------- 997 A DLEIRG G LLG EQSG++ TIGF LY LL AV+ ++ R+ + Sbjct: 975 AMRDLEIRGTGNLLGAEQSGNITTIGFDLYSRLLSQAVERVREERKRGQQQKSGEQKAQR 1034 Query: 998 ----------------------------TSQQTEVELRMPSLLPDDFIPDVNTRLSFYKR 1029 ++L + + LP +++ D RL Y+ Sbjct: 1035 ARAVEALRRAAVVSARSSFSGDADDPVLPDAMVSIDLPINAYLPQNYVDDEPLRLRVYQH 1094 Query: 1030 IASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEF 1089 IA A++ ++ ++ EL DRFG +P+PA LLD+ ++ A + G+ + ++ + Sbjct: 1095 IAEARSTRDIRMLRQELEDRFGPVPEPAARLLDLLTIKVLALQAGVISIISDDNEITVRL 1154 Query: 1090 AEKNHVNPAWLIGLLQKQPQHYRLDGP-TRLKFIQDLSERKTRIEWVRQFMREL 1142 + +++ L + P+ + RL + + + + + + ++ Sbjct: 1155 PKSVYLDREQLQR---ESPRGVVIGPQLARLDRRVLRDDWEVVLRQLLEALNKI 1205 >UniRef50_C2KYF4 Transcription-repair coupling factor n=1 Tax=Oribacterium sinus F0268 RepID=C2KYF4_9FIRM Length = 1138 Score = 1094 bits (2829), Expect = 0.0, Method: Composition-based stats. Identities = 388/1160 (33%), Positives = 612/1160 (52%), Gaps = 73/1160 (6%) Query: 4 QYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT 63 + T ++ E + ++ + + L + ++ + + A + + F Sbjct: 25 FFALTEALEKKEPLFVEGISDSLKSLLALGFRGKW---ILYLCKTEERAKEILQDGKIFA 81 Query: 64 DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFL 123 + + + L Y + + I R L QL + G+L+ + +++++ + Sbjct: 82 -ENCLLFPAKDYLFYKADTRGNYISRERSECLRQLVEEEEGMLVTTLPAMLEKLEGKNAF 140 Query: 124 HGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLD 183 ++ GQ LS ++L+ L S GY+ VDQV GEY+ RG +LD+F E P R++ Sbjct: 141 RQAVFTVQLGQTLSLESLQDSLHSLGYQRVDQVESRGEYSLRGGILDVFSNQMEEPLRIE 200 Query: 184 FFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEH 243 FFDDE+DSLR F ++SQR+LE+VE N+ P Sbjct: 201 FFDDEVDSLRYFSLESQRSLEQVEEANIYP------------------------------ 230 Query: 244 IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQADTLA 301 VS+ P+ ++ + L Y P + L++ + +R + + +A Sbjct: 231 ----VSEQGKPSSLKAF----------SLLDYLPKDCLVIVDEPVRVLEEGKRVEEEFIA 276 Query: 302 RFENRGVDPMRPLLPPQSL-WLRVDELFSELKNWPRVQLKTEHLPTKAANA------NLG 354 F R + L V L E + P + ++ ++ Sbjct: 277 YFSQRAEAEANQEKDQRPLDLFSVRTLMEECASRPIFFFSSLGGISEWGEVFENPLKSIS 336 Query: 355 FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMR 414 + Q + K+ + + S+ R L E L + ++ R Sbjct: 337 VECREIPFYGKQFAQFKGDMEKY-KKEKVRISLYSPSQSRASRLAEELRKEGLSAYCPDR 395 Query: 415 LDEASDRG--------RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTIN 466 L E + G ++ GF L ++ E DL G+ + R++ ++ + Sbjct: 396 LSEDREEGEDTENAGSIRVLPRYLRKGFYLPKEKLLVMTEQDLYGQSLVGRKRRKKKQV- 454 Query: 467 PDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSL 526 I +L ELH G VVH HG+G Y G+ + G++ +YL + Y + LY+PV+ L Sbjct: 455 ESLHIGSLTELHKGDYVVHESHGIGIYEGIERIVTDGVSKDYLKILYGDGGNLYLPVNKL 514 Query: 527 HLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 I +YAG + L++L G W + + K VR++A ELL +YA+R + G+ F D Sbjct: 515 DGIEKYAGKEAKAPKLNRLNGSEWQKTKSKVKGAVREIAKELLALYAKRQEERGYPFGKD 574 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 + F ++FP+E T DQ AI A DM MDRLVCGDVG+GKTE+A+RAAF AV Sbjct: 575 TVWQREFEEAFPYEETGDQLLAIEATKEDMESEKIMDRLVCGDVGYGKTEIALRAAFKAV 634 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 + KQVA L PTT+LAQQ Y+ F +R +PV + ++SRF+S KE + L ++A G+IDI Sbjct: 635 QDSKQVAYLCPTTILAQQIYNGFVERMKGFPVEVGILSRFQSQKEVHKTLEQLASGRIDI 694 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 L+GTH+LL DV FK+LGLL+VDEE RFGV+HKERIK+++ NVD+LTL+ATPIPRTL+M+ Sbjct: 695 LVGTHRLLSKDVHFKNLGLLVVDEEQRFGVQHKERIKSLKENVDVLTLSATPIPRTLHMS 754 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 + G+RDLSI+ P RL ++T+V E + +REAI RE+ R GQVYY++N V++I+ A Sbjct: 755 LVGIRDLSILEEAPMDRLPIQTYVMEEEEGTIREAISRELRRNGQVYYVHNRVKSIEDTA 814 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 RL +L+PEARIA HGQM E+ELE +M F +VLV TTIIETG+DIP ANT+II+ Sbjct: 815 LRLQKLLPEARIAYAHGQMGEKELEEIMLSFIAGEIDVLVSTTIIETGLDIPNANTLIIQ 874 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 AD GL+QL+Q+RGRVGRS+ +YA+LL K++T +++KRL+AI +LG+G +A Sbjct: 875 DADKMGLSQLYQIRGRVGRSNRTSYAFLLYKKGKSLTEESEKRLKAIREFTELGSGIRIA 934 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVEL 1006 DLEIRGAG +LG EQ G ME +G+ LY +LL +AV K ++ + +T++++ Sbjct: 935 LRDLEIRGAGNVLGAEQHGHMEAVGYELYTKLLRHAVLLEKGEKQ----EEEDFETQLDV 990 Query: 1007 RMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARL 1066 + + +P+ ++ + +L Y++IA +E E +++ EL DR+G LP L +A L Sbjct: 991 DLDAFIPESYMENEEQKLEAYQKIALLSSEEEKMDLEDELTDRYGDLPYQVENLFQVASL 1050 Query: 1067 RQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLS 1126 R K+G+ + + F K +N + L+ + R K + Sbjct: 1051 RNLLHKIGVTECKIKRGEIHFLFFPKAKINTDAIPALISESRGEIRFVNGESPKLLYKKK 1110 Query: 1127 ERKT--RIEWVRQFMRELEE 1144 + +I+ + +E+ E Sbjct: 1111 NLRDLPKIQESMEKAKEIAE 1130 >UniRef50_D1C4G9 Transcription-repair coupling factor n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C4G9_SPHTD Length = 1173 Score = 1089 bits (2816), Expect = 0.0, Method: Composition-based stats. Identities = 426/1161 (36%), Positives = 620/1161 (53%), Gaps = 39/1161 (3%) Query: 4 QYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT 63 +K G + +A ++A + + PV+++ + +A + ++++ Sbjct: 19 LLDAIRRLKPGRVLEIEGPPTSARLAILAALIAEVSHPVLIVTDRLDSAEEVTAGLAEYL 78 Query: 64 DQM--VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 ETLPY+ + + + R+ L +L + ++ P L Q + P + Sbjct: 79 PDDRDPTLWPVSETLPYELLPVDRSVSALRVELLARLARREPVPIVAPARALTQLLSPPA 138 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 + + + G+RL DA L AGY V V G+ RG ++D+FP + R Sbjct: 139 DVSAQSWHLAVGERLRSDAFVASLLDAGYEMVPVVQAPGQVGRRGGIIDVFPPVGDHALR 198 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF----EV 237 ++ F DEIDSLR+ D ++QR++ VE ++LP E + L + DT EV Sbjct: 199 IELFGDEIDSLRLIDPNTQRSVRRVEHYDILPPLEVSLAQRDAALSALRQMDTTTLRPEV 258 Query: 238 KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN---TLLVNTGDLETSAER 294 + E Q++ +G + G+E L Y ++V ++ S + Sbjct: 259 AEEWERSLQRLERGQVTVGLEL-LAPLLLPEPASLLDYLTMGEHLLVVVEPASVQLSITQ 317 Query: 295 FQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLG 354 +A + P P+ +L + L ++ A + Sbjct: 318 LEAQAEELRDALEDAGELPSGMPRP-YLDWQAVADRLSGARQIAFGPVPTHWSPPVAIIP 376 Query: 355 ----FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQ 410 A + A + +R+ L V+ + E G L E+L I P+ Sbjct: 377 DARPVYGRELPAYAGRLDALVADVRERLAD-GWAVILASEQSG---RLTEVLEEHDIFPR 432 Query: 411 RIMRL----------DEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQD 460 R + + ++ G+ + L+ + ++ G R Sbjct: 433 TRKRPAGNGRIAPPPEPPTPGTVEVVYSRLNGGWEHGGIKVLLLTDREMFGYRRVAAPAP 492 Query: 461 SRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLY 520 RR L+ + L GQ VVH+EHG+ RY G+ TLE G+ EYL+L YA + +LY Sbjct: 493 RRRAARRPPLLPS---LTPGQYVVHVEHGIARYGGLVTLEVSGVEREYLLLEYAANDRLY 549 Query: 521 VPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEG 580 +PV + I+ Y G L +LG W+R +Q+ VR++A ELL +YA R A EG Sbjct: 550 LPVDQIDRITPYEGA-GIEPKLTRLGSPEWARVKQRVRRAVREMAFELLQLYAAREATEG 608 Query: 581 FAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMR 640 AF D + + +SFP+ TP Q QAI V +DM +P MDRLVCGDVG+GKTEVA+R Sbjct: 609 VAFGPDTDWDRELEESFPYVETPGQLQAIREVKADMEKPRPMDRLVCGDVGYGKTEVALR 668 Query: 641 AAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA 700 AAF AV+N QVA+LVPTT+LA QHY FR R A +PVRIEM+SR RS KEQTQIL ++ Sbjct: 669 AAFKAVNNGYQVAILVPTTILALQHYHTFRSRLAPFPVRIEMLSRLRSRKEQTQILQQLE 728 Query: 701 EGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIP 760 G+ID++IGTH+LLQ DV+FK LGL+I+DEE RFGV HKE K +R NVD+LT+TATPIP Sbjct: 729 RGEIDVIIGTHRLLQRDVRFKKLGLVIIDEEQRFGVAHKEHFKRLRTNVDVLTMTATPIP 788 Query: 761 RTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVE 820 RTL MA+SG+RDLS+I TPP R ++TFV + ++REAILREI RGGQVY+++N V+ Sbjct: 789 RTLYMALSGIRDLSVITTPPQERTPIRTFVTASNDSLIREAILREISRGGQVYFVHNRVQ 848 Query: 821 NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880 +I ERL +LVPEAR +GHGQM E ELE++M F F+VLVCTTIIE+G+DIP Sbjct: 849 SIYHVLERLEKLVPEARFGVGHGQMDEDELEQLMLAFMQHEFDVLVCTTIIESGVDIPNV 908 Query: 881 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLG 940 NTIII+RA GL QL+QLRGRVGRSHH+AYA++L ++ +A RLEAI +LG Sbjct: 909 NTIIIDRAHQLGLTQLYQLRGRVGRSHHRAYAYVLYDANVPLSAEAVARLEAIQEATELG 968 Query: 941 AGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ 1000 AGF +A DLEIRGAG +LG EQSG + +G LY +L AV+ +K GR + Sbjct: 969 AGFQIALRDLEIRGAGNVLGPEQSGHVAAVGLDLYTRMLATAVEEIKQGR----PIEEPE 1024 Query: 1001 QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTL 1060 V+L + + +P+ ++ D R+ Y+R+A+ +T EL +++ E+IDRFG +PDP L Sbjct: 1025 AVTVDLPIEATIPESYVGDEGVRIDLYRRLAAVRTYAELRDLQEEMIDRFGPMPDPLLRL 1084 Query: 1061 LDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLK 1120 +D+ARLR +A LGI + E I + +N A L L Y RL Sbjct: 1085 VDLARLRIRANGLGITSMVEREGEVYIRPVLGSRLNQAQLRRELGD--GVYVTPNQVRLV 1142 Query: 1121 FIQDLSERKTRIEWVRQFMRE 1141 + + ++ V + E Sbjct: 1143 LSRLRVNVREAVQGVLDAVEE 1163 >UniRef50_Q1NPX2 Transcription-repair coupling factor n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NPX2_9DELT Length = 1162 Score = 1086 bits (2809), Expect = 0.0, Method: Composition-based stats. Identities = 422/1166 (36%), Positives = 634/1166 (54%), Gaps = 43/1166 (3%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLA 71 + E + + G A A LV + A P++ + PD + A +L +++ F+D V++ Sbjct: 10 QCKEPLDIYGVRGGAVAWLVGRLGG-LARPLLCVCPDDEQARQLATDLALFSDLPVVHYP 68 Query: 72 DWETLPYDSFSPHQDIISSRLSTLYQLPTM-QRGVLIVPVNTLMQRVCPHSFLHGHALVM 130 D E PY + P ++RL+ L+ + +++ L R P L A ++ Sbjct: 69 DLEVAPYAALRPDPGSRAARLAALFAISDAASPFIMVAAGRALSARTLPPERLQALAELV 128 Query: 131 KKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEID 190 +G+ L +L + GY V V E GEY+ RG ++D+FP G E P RLDFF D ++ Sbjct: 129 IRGEECDAAELTGRLAAGGYERVALVQEVGEYSIRGGIIDIFPPGQEYPLRLDFFGDTVE 188 Query: 191 SLRVFDVDSQRTLEEVEAINLLPAHEFPTD------KAAIELFRSQWRDTFEVKRDPEHI 244 +R FD SQR++ E+ LLPA + + A+ QW + + R P Sbjct: 189 EIRRFDPISQRSVGELAEAILLPASDCLYPAADSPAQQALLERHRQWAASLQWDRQPSRQ 248 Query: 245 YQQ-VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAE-RFQADTLAR 302 ++ + + AG +++ PL L PL Y PANTL++ + +A Sbjct: 249 LEECLRQHRPFAGDQFFLPLLEPAALSPLA-YLPANTLIIQVDHPRLLQNLALHRERIAS 307 Query: 303 FENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQK----- 357 +P LPP L+L ++L + ++ + Sbjct: 308 NYQELTATAQPALPPDELFLSAEQLHGHFEQAAGARIFPLAPGEANGQRVFQIEAGNHVL 367 Query: 358 -LPDLAVQAQQKAPLDALRKFLETF---DGPVVFSVESEGRREALGELLARIKIAPQRIM 413 L ++ +++ L L + ++ + V+ + + + ELLA + Sbjct: 368 LKQQLDLKRREEGLLAPLAQQIKQWRQQGERVLLACRTPRHAAKMAELLAGHGVT----- 422 Query: 414 RLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRN 473 ++ GF + E +L G+R R P T I + Sbjct: 423 -----DGDHCRILKQPLSSGFDLPSEGEHWLSEGELFGDRRLESAAAKSRA--PATKIVS 475 Query: 474 LAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYA 533 E++ G PVVH HG+G Y G+ +E GIT +YL + Y KLY+PV L+ + +Y Sbjct: 476 HDEINPGDPVVHRRHGIGIYRGLVPIELDGITNDYLEIHYRGADKLYIPVDQLNSVGKYK 535 Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 G A++ L KLG ++W RQK + V VA +LL +YA+R EG F E Y Sbjct: 536 GLADQEPTLDKLGDNSWLATRQKVKKAVWQVARDLLKLYAKRQLAEGNRFSPPGEMYHEL 595 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 +SFP++ TP Q +AI V+ D+C MDRLVCGDVG+GKTEVA+RAAF V++ QVA Sbjct: 596 EESFPYDETPGQLKAIGEVIDDLCSSKPMDRLVCGDVGYGKTEVAVRAAFKVVEDGGQVA 655 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 VLVPTT+LA+QH FR+R A +PVRI+ ++RFRS+ EQ +++A++A KIDI+IGTH+L Sbjct: 656 VLVPTTVLAEQHAATFRERLAGFPVRIDSLNRFRSSAEQKRLVADLAAAKIDIVIGTHRL 715 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 L +DVKF+ LGLLIVDEEHRFGV HKE+IK +R+ VD+LTLTATPIPRTL +++ G+RDL Sbjct: 716 LSADVKFRRLGLLIVDEEHRFGVSHKEKIKKLRSGVDVLTLTATPIPRTLQLSLLGVRDL 775 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 S+I++PP R AVKTF+ +D +V++EAI+RE+ R GQV+ ++N V +I + A R +LV Sbjct: 776 SVISSPPRLRRAVKTFIARHDDLVIKEAIMRELGRDGQVFLVHNRVSSIHEVATRAQQLV 835 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 P A++A+ HGQM R+LE +M F + NVLVCTTIIE+G+DIP ANTIII RAD GL Sbjct: 836 PTAQVAVAHGQMPARQLEEIMVRFVRREINVLVCTTIIESGLDIPDANTIIITRADRLGL 895 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 A+++QLRGRVGRS QAYA+LL P + +A+ RL+A+ +LG GF LA DL+IR Sbjct: 896 AEIYQLRGRVGRSRQQAYAYLLVPALDDLAGEARHRLQALMDYNELGGGFKLALSDLQIR 955 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALK----------AGREPSLEDLTSQQTE 1003 G G +LGE QSG++ +G+ +Y++LL+ V LK + E E + E Sbjct: 956 GGGNILGESQSGNIAAVGYDMYLDLLQKTVLDLKRRLREGEETSSDPETMAEVGEEFEPE 1015 Query: 1004 VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDI 1063 ++L + + +P ++ DVN R Y+RI +A+ + L +I+ E DRFG LP L +I Sbjct: 1016 IKLAIAAHIPASYVDDVNQRYLCYRRITAAEDDATLADIRDEFADRFGPLPPETANLFEI 1075 Query: 1064 ARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQ 1123 L+ + +L I K+E + FA V P L L+ + + RL +L Sbjct: 1076 ISLKNRLAELKISKIEQGPTALALFFAPSTPVPPERLTELVAQGKKGMRLTPEGKLIKPL 1135 Query: 1124 DL-SERKTRIEWVRQFMRELEENAIA 1148 +++ + L NAI+ Sbjct: 1136 PANPSPTVVFNEIKKLLHALRGNAIS 1161 >UniRef50_B9KYW6 Transcription-repair coupling factor n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KYW6_THERP Length = 1165 Score = 1081 bits (2797), Expect = 0.0, Method: Composition-based stats. Identities = 439/1145 (38%), Positives = 638/1145 (55%), Gaps = 36/1145 (3%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMN 69 + +G+ + EL AA ++A +A P+++I P +A L D + Q + V Sbjct: 31 LASGQSLVAEELPVAARPAVLAALARILDRPLLVIVPRQAHADELADAVGQLLGEIPVEV 90 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 ETLPYD F+ + R L ++ G+ I P L+Q + P+ L G L Sbjct: 91 WQAPETLPYDVFAQDRASAVERSWFLQRMTEPSPGLFIAPARGLLQLLPPNESLRGCPLT 150 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 ++ GQ+++ + L +GY V V + G ++ RG ++D++P G++L R++FF DEI Sbjct: 151 LRVGQKMALQTVLDYLVDSGYAPVPLVQQPGSFSRRGGIVDVWPPGNDLAVRIEFFGDEI 210 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF----EVKRDPEHIY 245 DS+R F+ +QR+++ + +I LLP E P + + + DT EV+ + E + Sbjct: 211 DSIRRFEPTTQRSVDRLHSIMLLPLSEAPLPQLQAAATKLRRLDTSSLRPEVREEWERLC 270 Query: 246 QQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN--TLLVNTGDLETSAERFQADTLARF 303 QQ+ +G L E P F E L FP + ++V+ G + + ++ Sbjct: 271 QQIERGELVPLPELALPFVFPEA-SSLLDRFPRSFPVVVVDPGAVRLTIDQLTQQAEELR 329 Query: 304 ENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAAN---ANLGFQKLPD 360 E + P P+ + D +++ L+ P + L T A ++LGF Sbjct: 330 ETSELSGELPRGLPRP-YHPDDRIWTSLRVHPILWLGTVEQGDSANGDIPSDLGFTT-DI 387 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 A+ + L FL + + + + L LL+ + Sbjct: 388 PAIAGRLDTLPAVLAPFLAEDYAVTLVT----EQADRLAHLLSESSQYAEAASIAASTIA 443 Query: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 R G G+ L L+ + +L G R R + RR L L+ L G Sbjct: 444 R------GRLPGGWKHREARLLLLTDRELFGLRRLPRPRGRRRFEVTSDL---LSRLVPG 494 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 VVH++HG+ RY G+ L G+ EYL+L YA + +LY+PV L I+ Y E Sbjct: 495 AYVVHVDHGIARYGGLVHLTINGVHREYLLLEYAENDRLYLPVDQLDRITLYESLDGE-P 553 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 L +LG WSR +++ E VR++A ELL +YA R A G AF D + + +SFP+E Sbjct: 554 KLTRLGSPEWSRVKRRVREAVRELAFELLQLYAAREAAPGIAFGPDTQWDRELEESFPYE 613 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 TPDQ +AI V +DM +P MDRL+CGDVGFGKTEVA+RAAF AV+N QVA+LVPTT+ Sbjct: 614 ETPDQWRAIQEVKADMERPRPMDRLLCGDVGFGKTEVALRAAFKAVNNGYQVAILVPTTV 673 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LA QHY+ FR+R A++PVRIEM+SR RS +EQ I+ + G +DI+IGTH+LLQ DV F Sbjct: 674 LALQHYNTFRERLASYPVRIEMLSRLRSKREQRAIIEGLRAGTVDIVIGTHRLLQRDVAF 733 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 K LGL+I+DEEHRFGV HKE K +R NVD+LT+TATPIPRTL +A+SG+RDLS+IATPP Sbjct: 734 KRLGLVIIDEEHRFGVAHKEHFKRLRTNVDVLTMTATPIPRTLYLALSGVRDLSVIATPP 793 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 R V+TFV V+REAILREI RGGQVY ++N V +I A+RL LVPEAR A+ Sbjct: 794 VDRTPVRTFVTPARDSVIREAILREIARGGQVYVVHNRVHSILDFAQRLRGLVPEARFAV 853 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 HGQM E+ELER++ DF ++++VL+CT IIE+G+DIP+ NTIII++A GL QL+QLR Sbjct: 854 AHGQMPEQELERIIVDFIERKYDVLICTAIIESGVDIPSVNTIIIDQAQQLGLTQLYQLR 913 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGRSH +AYA+LL + ++ +A+ RLEAI +LGAG +A DLEIRGAG +LG Sbjct: 914 GRVGRSHQRAYAYLLYDDRRPLSAEARARLEAIQEATELGAGLQIALRDLEIRGAGNILG 973 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 EQSG + +G LY +LL AV L+ GR + ++L + + +P ++ D Sbjct: 974 PEQSGHIAAVGLELYTQLLARAVQELREGR----PIDEAPSVTIDLPIEATIPSEYCGDE 1029 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 R+ Y+R A +T+ +LE++ E+ DRFG LPDP + L+D+A+LR A +LG+ L Sbjct: 1030 AIRMRLYQRFAEIRTDEQLEDLVSEIRDRFGPLPDPVQRLVDLAQLRLWANRLGLASLIE 1089 Query: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1140 + I ++ L Q Y RL + E V +R Sbjct: 1090 RDGELFIRPVVGTRLDQEELRR--QVGSGVYVTPHQIRLVIARLEVPL---WEAVTTVLR 1144 Query: 1141 ELEEN 1145 +E Sbjct: 1145 AIEHR 1149 >UniRef50_C2BDI7 Transcription-repair coupling factor n=2 Tax=Anaerococcus RepID=C2BDI7_9FIRM Length = 1162 Score = 1081 bits (2795), Expect = 0.0, Method: Composition-based stats. Identities = 346/1145 (30%), Positives = 598/1145 (52%), Gaps = 28/1145 (2%) Query: 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75 + LT A L I E VV I + + + + +I+Q + D +T Sbjct: 26 PLYIQALTDGIKAHLALAIFELLGENVVFITDNPKRSEKFLQDINQIS-AKAKLYPDLDT 84 Query: 76 LPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 Y+ S I+ RL L L ++ + + + ++ + +++ + Sbjct: 85 NFYNIKSIDDKKINQRLECLISLSKGEKFITVTNFAAIKNKLTTLDRFNKSFVIIDEESI 144 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 + D L + Y D V E G++A RG+++D++P+ E P R++ FDDE+DS+R+F Sbjct: 145 IDVDDFINSLSALNYNSTDFVEERGDFAKRGSIIDIWPINYEDPVRIELFDDEVDSIRIF 204 Query: 196 DVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR-----------DPEHI 244 D ++QRT+++++ + + PA+E D + + + K + I Sbjct: 205 DKNTQRTIKKIKNVEIGPANELLYDSDDYKKVIKAISNDIDKKEVTNTKDQKLVDKYKQI 264 Query: 245 YQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFE 304 + + A + + +E Y PA T+ + D+ E D E Sbjct: 265 ISFLDQKMYVANKD-LINAYRTENYSSFIDYLPAGTIFIF-DDISRIYESVTKDDEKFLE 322 Query: 305 NR--GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKT--EHLPTKAANANLGFQKLPD 360 + ++ + L E++ + + + + + + + + Sbjct: 323 DLTYQMENGEVFGSFANYLLDSSEIYKNISEKSIINFTSILKRTKLFSPRKIIDLKTIEA 382 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 + + L D V S+ R+E L + D Sbjct: 383 ENFNKDIENFIRTSID-LAKRDKKVYVFAGSKSRKENLLKSFIDHDFLLAGFEENSTDFD 441 Query: 421 RGRYLM-IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHI 479 + ++ + G+ +L + ++ G+ +++ + + I N ++L I Sbjct: 442 KTPIIISDKNSSEGYYIKDVDLFVFTSKEVFGKTSSKKNNRKKVSSKN---IINYSDLEI 498 Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G VVH +G+G Y G+T +E + +++++ Y + KLY+PV ++L+S+Y G E Sbjct: 499 GDYVVHENNGIGIYKGLTKIERNDVEKDFILIEYRGNDKLYIPVDQMNLVSKYIGNRGEK 558 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599 L LG W +++Q+A + V ++A +L+ +YA+RA ++G AF D F +SFP+ Sbjct: 559 PKLSALGSLQWQKSKQRAKKAVDEIADDLVKLYAKRAKEKGHAFSKDTTWQVEFENSFPY 618 Query: 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 659 + T Q ++I + +DM MDRL+CGDVG+GKTEVA+RAAF A+ + QVA LVPTT Sbjct: 619 DETFSQLRSIEEIKADMESENPMDRLLCGDVGYGKTEVALRAAFKAIMDGYQVAFLVPTT 678 Query: 660 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVK 719 +LA QHY +RF ++P+ M+SRF + + +IL ++ GKIDI++GTH+LL DVK Sbjct: 679 ILANQHYHTMVERFKDFPITCAMLSRFNTKAKDDKILKDIKSGKIDIVVGTHRLLSDDVK 738 Query: 720 FKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 F LGLLI+DEE RFGV+HKE+ K +A++D+LTL+ATPIPRTL M++SG+RDLS + P Sbjct: 739 FNKLGLLIIDEEQRFGVKHKEKFKKFKASIDVLTLSATPIPRTLQMSLSGIRDLSTLDDP 798 Query: 780 PARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 839 P RL V T+V E+DS ++R+AIL+EI R GQVY++YN V +I+K ++ +LVPEA I Sbjct: 799 PEERLPVNTYVLEFDSGIIRDAILKEINRNGQVYFVYNRVNDIEKLFLKIKDLVPEASIE 858 Query: 840 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899 I HGQM R++E +M DF + ++L+ TTIIETG+DI NTI+I +D GL+QL+QL Sbjct: 859 IVHGQMSPRQIENIMMDFIDGKIDILLATTIIETGMDIKNVNTIVIYDSDLMGLSQLYQL 918 Query: 900 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959 +GR+GR + +YA+ K +T +KRL++I D G+G+ +A DLE+RGAG LL Sbjct: 919 KGRIGRGYRSSYAYFTYRSGKILTEIGEKRLKSIRDFSDFGSGYKIAMKDLELRGAGNLL 978 Query: 960 GEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPD 1019 GE QSG +E +G+ LY++ L+ AV+ ++ QT +++++ + +P+ +I D Sbjct: 979 GESQSGHVEAVGYDLYVKFLQEAVEKASGKE---VKIKLENQTFIDIKIDAYIPNSYIND 1035 Query: 1020 VNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLE 1079 + ++ Y RIA+ +++ + + ELID +G +P ++ ++ ++ A + G ++ Sbjct: 1036 SSQKIEIYNRIANINDKSDYDALVEELIDVYGDIPVIVDNIMYVSLIKAIASENGFTEIR 1095 Query: 1080 GNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFM 1139 + FA K++ L + + LD + FI KT++ + + Sbjct: 1096 EINNSIYLFFASKDNFTFEELKYINETYKGVMSLDLSDKPAFII--PAIKTKLLDTYELL 1153 Query: 1140 RELEE 1144 +++ Sbjct: 1154 DTIKK 1158 >UniRef50_D2RAQ2 Transcription-repair coupling factor n=6 Tax=Actinobacteridae RepID=D2RAQ2_GARVA Length = 1202 Score = 1079 bits (2791), Expect = 0.0, Method: Composition-based stats. Identities = 401/1154 (34%), Positives = 616/1154 (53%), Gaps = 70/1154 (6%) Query: 27 CATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD---QMVMNLADWETLPYDSFSP 83 + +VA +A++ PVV+I P ++A + + D Q V L WETLP++ SP Sbjct: 81 RSAIVAALAKK--KPVVVIVPSSRDAEDFIASVRDWYDGDAQDVAKLEAWETLPHERLSP 138 Query: 84 HQDIISSRLSTLYQLPTMQR--------GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 D ++SR++ +L + VL++PV +L+Q V L+ + G+ Sbjct: 139 RADTVASRIAVFRRLCHPENNTSLFGPIRVLVMPVRSLIQPVV-EGIGDIDPLLFECGKE 197 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 L+ + +L Y VD VME GE+A RG ++D+F P R++FF DEID+++ F Sbjct: 198 LTLEYAVKRLVENAYNRVDLVMERGEFAVRGGIIDVFAPTMTHPVRIEFFGDEIDTIKQF 257 Query: 196 DVDSQRTLEE-VEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLP 254 QRT + +I P E + + RS + + + + ++ Sbjct: 258 HASDQRTYGNNIASIWATPCRELQITEKICKRARSLI----GSIPNADDMLESIANSIPV 313 Query: 255 AGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQADTLARFENR------ 306 G+E P + + + + P ++++ + +A+ A Sbjct: 314 EGMESLLPALV-DRMESVQNMLPKESVIILSDPEKCRRAADDVTATANEFLAASWHVAAS 372 Query: 307 GVDPMRPLLPPQSLWLRVDELFS--ELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQ 364 G P+ Q+ +L DE S EL N +L + + N+ + Sbjct: 373 GHGSGAPITFDQANFLDFDETISSLELSNHDVWKLTSFGVDN-QIYGNIALPASAPQEFR 431 Query: 365 AQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY 424 + + ++ V + + G L + + Sbjct: 432 GDESKVSGGITSLVDN-GFAVTITAAASGTLARLRRAIYATGVH-------------EFT 477 Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 + + GF+D V +A++ E DL G+ A + + + +L EL G VV Sbjct: 478 TVRSSISDGFIDNVARIAILTERDLTGKSSASAQLKTPKRRRKAI---DLMELKPGDFVV 534 Query: 485 HLEHGVGRYAGMTTLEA----GGITGEYLMLTYAN------DAKLYVPVSSLHLISRYAG 534 H +HG+GR+ GM G T EYL++ YA + KL++P L L+S+Y G Sbjct: 535 HEQHGIGRFVGMKQRNIAVSGGSATREYLVIEYAPSKRNAPNDKLFIPTDQLDLVSKYIG 594 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 E L+KLGG W++ + KA + V ++A L+ +Y+ R GFAF D + Sbjct: 595 A--EIPKLNKLGGSDWAQTKAKAKKHVHEIAENLIKLYSARQQSRGFAFSKDTPWQKELE 652 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 D+FP++ T DQ I+ V +DM P+ MDRL+CGDVGFGKTE+A+RAAF AV + KQV V Sbjct: 653 DAFPYQETADQLTTIDEVKADMENPIPMDRLICGDVGFGKTEIALRAAFKAVQDSKQVVV 712 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 LVPTTLL QQHY+ F +RF +PV++ +SRF+++KE + LA + +G ID++IGTHKLL Sbjct: 713 LVPTTLLVQQHYETFTNRFEGFPVKVAAMSRFQTSKEIEETLAGLQDGSIDVVIGTHKLL 772 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 +KFKDLGL+I+DEE RFGV HKE +KA+R NVD+L+L+ATPIPRTL MA++G+R++S Sbjct: 773 NPSIKFKDLGLVIIDEEQRFGVEHKETLKALRTNVDVLSLSATPIPRTLEMAVTGIREMS 832 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 +ATPP RL V T+V YD+ V I RE+LRGGQV+Y++N VE+I A ++ ELVP Sbjct: 833 TLATPPEDRLPVLTYVGAYDNSQVAACIKRELLRGGQVFYVHNRVEDISSVASKIQELVP 892 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 + R+AI HG+M E++L+ V+ DF H+ +VLVCTTIIETG+DI ANT+I++ AD FGL+ Sbjct: 893 DVRVAIAHGKMGEKQLDAVIRDFWHRDIDVLVCTTIIETGLDISNANTLIVDHADRFGLS 952 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QLHQLRGRVGR H +AYA+ L K MT + RL IA LG+GF +A DLE+RG Sbjct: 953 QLHQLRGRVGRGHERAYAYFLYDPSKPMTQQSHDRLSTIAQHTALGSGFDVAMKDLELRG 1012 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPD 1014 G LLG+EQSG +E +GF LY+ ++ AV+ K E + ++L + + LP Sbjct: 1013 TGNLLGDEQSGHIEGVGFDLYVRMVSEAVEKYKE-----PERVEPVCVTIDLPVEASLPV 1067 Query: 1015 DFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 D+I RL Y+++A+AK ++L+E+ EL+DRFG P+ +L D+ARLR +A+++G Sbjct: 1068 DYIASDKLRLEAYRKLAAAKDNSDLQELHDELLDRFGNPPEEFESLCDVARLRFKAREIG 1127 Query: 1075 IRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQH-----YRLDGPTRLKFIQDLSERK 1129 I ++ K + + L + + + P Sbjct: 1128 ITQISSQGKSVRVVGIDPKESVMMRLKRIYKGLQYRPLTHMLIVPAPFESSLGSGSMSES 1187 Query: 1130 TRIEWVRQFMRELE 1143 ++W +Q + +L Sbjct: 1188 DILKWSKQLLEDLA 1201 >UniRef50_D2RLM5 Transcription-repair coupling factor n=2 Tax=Acidaminococcus RepID=D2RLM5_ACIFE Length = 1092 Score = 1078 bits (2789), Expect = 0.0, Method: Composition-based stats. Identities = 372/1131 (32%), Positives = 580/1131 (51%), Gaps = 77/1131 (6%) Query: 16 QRLLGELTGAACATLVAEIAE--RHAGPVVLIAPDMQNALRLHDEISQFTDQMVM--NLA 71 L LTG+ A + + E + A P+V++ + ++ E++ F + M Sbjct: 28 PLQLTGLTGSVKAGFLCALQETVQAAQPLVILTVNRESIRAQRRELAHFYPDLAMRELYP 87 Query: 72 DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 + + ++ +++ R + L + + G++ +Q++ L L + Sbjct: 88 AS-LIHGQVDTRNEQVMAERAAALEMIVRKEPGIIFATAEAAIQKLPQPESLVRENLKLA 146 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 GQ + + + +L AGY +QV G+ A RG +LD+FP+ + R+++FD+ ID+ Sbjct: 147 VGQEIEQSLVVEKLVKAGYERTEQVDTLGQVAVRGDILDVFPINGKDSVRIEWFDNTIDA 206 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKG 251 ++ FD+D+QR++ + + ++P I Sbjct: 207 MKRFDLDTQRSIGTISQVGIMP---LAVPNQEIS-------------------------- 237 Query: 252 TLPAGIEYWQPLFFSEPLPPLFSYFPAN--TLLVNTGDLETSAERFQADTLARFENRGVD 309 LF Y A+ +L ++ D + Sbjct: 238 ------------------ASLFQYLSADQLAVLDEPVAFFEECKKSWGDNREFADQL--- 276 Query: 310 PMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKA 369 L + + + + + P + Q Sbjct: 277 ------------LDQETMIQQAGETHLLTVSDLGHPYFPQAPRIHVQVRAMAPYNKNTDL 324 Query: 370 PLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGA 429 L+ +L+ + + + + L E L + + + G + G+ Sbjct: 325 LQKDLKGWLDQ-GIHPLIMMGTRDKAAGLAESLKGAGLPMAFAGQFQGVPETGGQVFAGS 383 Query: 430 AEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHG 489 +GF L+ ESD+ G A++++ +T + +++ G VVH G Sbjct: 384 LTNGFYFWDEKWLLLTESDIFG---AQKKRRLTKTKGKGPALNYFSDIKAGDYVVHDVQG 440 Query: 490 VGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDA 549 +GRY G+ T+E G+ +YL L YA KL+VPV + L+ +Y G L +G Sbjct: 441 IGRYMGVETIEVNGVHRDYLQLQYAGGDKLHVPVEQVGLLHKYVGNEGTPPKLSNMGRKD 500 Query: 550 WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAI 609 W +A +KA + + +A ELL +YAQR G AF D + F DSFPFE TPDQ +AI Sbjct: 501 WQKATRKAQKAITILATELLRLYAQRKITPGHAFAPDTHWQKEFEDSFPFEETPDQLKAI 560 Query: 610 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 669 + +DM +P+ M+RL+CGDVG+GKTEVA+RAAF AV + KQVAVL PTT+LAQQH F Sbjct: 561 AEIKADMEKPVPMERLLCGDVGYGKTEVAIRAAFKAVMDGKQVAVLAPTTVLAQQHLLTF 620 Query: 670 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 729 R ++ VR+EM+SRFR+ K+Q +I+ VAEGKID+LIGTH++L DV+F DLGLLI+D Sbjct: 621 TQRMGSFGVRVEMLSRFRTPKQQREIMERVAEGKIDVLIGTHRILNPDVEFHDLGLLIID 680 Query: 730 EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF 789 EE RFGV KE+IK A +D+LTL+ATPIPRTL++A+ RD+SII +PP RL V+T+ Sbjct: 681 EEQRFGVAQKEKIKQRSAGIDVLTLSATPIPRTLHLALVKGRDMSIIESPPEDRLPVETY 740 Query: 790 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERE 849 V EYD +VREA+ REI RGG++YY++N +E + + A L ELVP I + HG+M E E Sbjct: 741 VAEYDDGMVREALEREIRRGGRIYYVHNRIEGLSRIAAHLRELVPGITIGLAHGRMTEDE 800 Query: 850 LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 909 LE VM F+ F+VL+ TTIIE G+D+P ANTIII+ A++FGL+QL+Q+RGRVGRS Sbjct: 801 LEDVMLGFYQGDFDVLLSTTIIENGLDVPLANTIIIDGAENFGLSQLYQMRGRVGRSSRL 860 Query: 910 AYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMET 969 AYA+ L + ++ AQKRL+AI +LGAGF +A DLEIRGAG LLG EQ G + Sbjct: 861 AYAYFLYKKDRVLSEVAQKRLQAIRDFTELGAGFKIAMRDLEIRGAGNLLGAEQHGQITG 920 Query: 970 IGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKR 1029 +GF LY LLE ++ L+ G + ++ +E+++ + +PDD+I + +L Y R Sbjct: 921 VGFDLYCRLLEKTINTLQNG--GNPDEPVPPDPVIEMKLDAYIPDDYIDNPRYKLELYHR 978 Query: 1030 IASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEF 1089 + K + ++ E+IDRFG P L +A LR +KL I + + F Sbjct: 979 LGDMK-YEDRNDLMDEIIDRFGTPPTQVENLWRVAALRDVCRKLRIISVAVRPGEIRLAF 1037 Query: 1090 AEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLS-ERKTRIEWVRQFM 1139 + NP L L+++ L + +F+ + + W+ + + Sbjct: 1038 DPHSKANPDVLQALIREYVPRATLKMGPQPQFVLKTKGMEEQPLSWLEKNL 1088 >UniRef50_D1BNT3 Transcription-repair coupling factor n=3 Tax=Veillonella RepID=D1BNT3_VEIPT Length = 1098 Score = 1075 bits (2780), Expect = 0.0, Method: Composition-based stats. Identities = 379/1152 (32%), Positives = 612/1152 (53%), Gaps = 79/1152 (6%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAE-IAERHAGPVVLIAPDMQNALRLHDEIS 60 P + + ++ L+G+ + L+++ + PVV++ D + +++ Sbjct: 13 PSFVDGLNAFQRKGKSVIYGLSGSQKSFLLSQSFSAGLTKPVVIVVHDKDHKEMWERDLA 72 Query: 61 QFTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCP 119 F V++ + + + + + ++ +++ L L + V+I + Q V Sbjct: 73 FFMPNAPVLSFPTTDHVDFTTVARSLEVQGAQMRALALLAWQEPAVVIANAEEVTQYVVS 132 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 +L G +L + RD QL + GY VDQV + G +A RG +LD++P+ S+ P Sbjct: 133 PHYLKGQSLHFALNDAIERDVALEQLVTIGYERVDQVEQRGHFAVRGDILDIYPVNSDHP 192 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR 239 R++FF DEID+LR F V++QR++E++E+ F K+ Sbjct: 193 IRIEFFGDEIDTLRFFSVENQRSIEQIES---YTVTPFFLGKS----------------- 232 Query: 240 DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN-TGDLETSAERFQAD 298 + L SY TL+ + G ++ + ++F + Sbjct: 233 ---------------------------DADSTLLSYVKEGTLIYDEPGRIQEALKKFLKE 265 Query: 299 TLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLK--TEHLPTKAANANLGFQ 356 +N +EL + +V + +G Q Sbjct: 266 DPTHRKN---------------HCDWNELQRTVDARNQVAFTFMQQRSIGLTGFNPIGIQ 310 Query: 357 KLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD 416 + + Q D ++++ VV + ++ RRE + L I Sbjct: 311 GKTMTSFERQIPLLTDEIKQWHR-LHHQVVIVLNNQQRREGIERALEGEHIVFTHSDTW- 368 Query: 417 EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAE 476 A ++ G GF +L ++ E ++ G++ + R ++ I + Sbjct: 369 IAKPNTVIILNGLLTDGFELPNSHLVVVVEGNIYGQQKRKLRNKPKK----GQEINYFTD 424 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 L G VVH HG+G+Y G+ T+E GI +Y+ + YA KL++P ++L + +Y G Sbjct: 425 LTPGDYVVHSMHGIGKYIGLKTIETEGIHRDYIEIAYAGTDKLFLPANNLDQLQKYIGNE 484 Query: 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596 + +HK+GG W++ KA + + D+A +L++IYAQR EGFAF D+ Q F D+ Sbjct: 485 GDVPRIHKMGGRDWAKVVTKAKKSIDDLADKLVEIYAQREITEGFAFLPDQPWQQEFEDA 544 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 FP+E T DQ QA + M +P+ MDRL+ GDVGFGKTEVAMRA F AV + KQVAVLV Sbjct: 545 FPYEETEDQLQATAEIKESMERPVPMDRLLAGDVGFGKTEVAMRAIFKAVMSGKQVAVLV 604 Query: 657 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS 716 PTT+LAQQH+ F +RFA + V++++++RFR+ E+ QIL V +G IDILIGTH LL Sbjct: 605 PTTVLAQQHFQTFLNRFAPFGVKVDVLNRFRTTSEKKQILKGVEDGSIDILIGTHSLLNK 664 Query: 717 DVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 776 V FKDLG+L+VDEE RFGV KE+ K +N+D+LTL+ATPIPRTL+M++ G+R++S+I Sbjct: 665 KVVFKDLGMLVVDEEQRFGVAQKEKWKEWASNIDVLTLSATPIPRTLHMSLVGVREMSVI 724 Query: 777 ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 TPP RL V+T+V EYD ++ +AI RE+ RGGQVY++YN V +I E L +P Sbjct: 725 NTPPEERLPVQTYVVEYDMNLIADAIKRELARGGQVYFVYNRVASINHMGELLESALPGL 784 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 R A+ HGQM R++E +M DF+ ++VL+ T+IIETG+DIP ANTIII AD GL+QL Sbjct: 785 RYAVAHGQMTGRQIEEIMTDFYEGHYDVLLSTSIIETGLDIPNANTIIIYDADRLGLSQL 844 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 +Q+RGRVGRS +AYA+ + K ++ A+KRL+AI +LGAGF LA DLEIRGAG Sbjct: 845 YQMRGRVGRSRRRAYAYFMYRPDKILSEAAEKRLKAIEEFTELGAGFKLAMRDLEIRGAG 904 Query: 957 ELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 LLG +Q G++ ++GF +Y+ +LE A+ + +E S ++L + + + D + Sbjct: 905 NLLGSQQHGNIASVGFGMYVSMLEEAIAKAQNKE---VERDVSIDPAIDLEVDAFIDDAY 961 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076 I D ++S Y+R+ K++ +L+++ ELIDRFG DP LL IA++++QA+ LGI+ Sbjct: 962 IKDSARKISVYQRLLHIKSKEQLDDMTDELIDRFGTPTDPVDRLLRIAQIKEQARLLGIK 1021 Query: 1077 KLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRL--DGPTRLKFIQDLSERKTRIEW 1134 + +K I + + + + + + + + + P L + + + + Sbjct: 1022 SVVRRDKQLTIHWHDDSKMADWDMGAVPEDLWKKMKFMDTKPATLYVSLNGMKG-SILTI 1080 Query: 1135 VRQFMRELEENA 1146 ++ L + Sbjct: 1081 TEAVIKALSHKS 1092 >UniRef50_A0LNZ8 Transcription-repair coupling factor n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LNZ8_SYNFM Length = 1189 Score = 1074 bits (2779), Expect = 0.0, Method: Composition-based stats. Identities = 413/1162 (35%), Positives = 646/1162 (55%), Gaps = 40/1162 (3%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN-- 69 ++ E +L A A L+A P +L+ P + A + I+ F + Sbjct: 32 ESRESAVLRGAQKPAVAYLLARGMATLKRPFLLVTPTDREAESFAETIAFFAGNDLHRQD 91 Query: 70 LADWE---TLPYDSFSPHQ-----DIISSRLSTLYQL-PTMQRGVLIVPVNTLMQRVCPH 120 + LP S Q ++ R+ TL+ ++ V + LM+R+ Sbjct: 92 VPADRRVWCLPSRSGQKSQSLGKMATMARRMETLHAFRASIGSNVFVTSAVALMERLLLP 151 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 L H+ KG+ + + L L GY V V E+G+++ RG +LD++ P Sbjct: 152 EVLLAHSDYRVKGETVELETLCATLVERGYYRVSLVEEYGDFSIRGGVLDVYAPLYRWPL 211 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 RL+FF DE++S+R+F +QR++ +E LLPA E D +A E R R Sbjct: 212 RLEFFGDELESIRLFHPSTQRSMGILEDAVLLPASEVILDVSARERAREAVYADVREGRL 271 Query: 241 PEHI----YQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLE--TSAER 294 ++ +G E +F+ E +++Y T++V + L+ E Sbjct: 272 TPAAGNVWLDKLQEGHQFGAFESIMSVFY-EKTVTVWNYLDPATVVVWSDALQIRKIMEE 330 Query: 295 FQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL-----KTEHLPTKAA 349 F +R N P PP L + L ++ +++ ++ + TE Sbjct: 331 FFLHA-SRDWNENHSPHEWRRPPSELLEIPERLIADGESFQQLIVNSLSGGTEPRAVFDM 389 Query: 350 NANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFS---VESEGRREALGELLARIK 406 + Q + A+++ L+ L + + + + S + + L ELL Sbjct: 390 GTSGHEQLALSVRAHAEKERLLEPLARQFQRWREEGILSFLVCRQKEQAGRLSELLEGHG 449 Query: 407 IAPQRIM---RLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRR 463 + + +++G+ + GFV LA++ E ++ G+R RR S Sbjct: 450 TDTVLTLLPFGAESYEAPAVKVIVGSLDRGFVWPAERLAVVAEEEIFGKRTRRRSGKS-- 507 Query: 464 TINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPV 523 + + +LHIG VVH++HG+G Y + L GI ++L+L Y + +LYVPV Sbjct: 508 --VSGLFLSSFQDLHIGDFVVHVDHGIGVYKELVHLAVRGIESDFLLLEYQDGDRLYVPV 565 Query: 524 SSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAF 583 L + +Y G + + KLGG +W A++KA E VA ELL +YA+R EGF F Sbjct: 566 DKLQKVQKYLGLEGQQPKIDKLGGRSWETAKKKALESAERVAEELLSLYAKRQIGEGFRF 625 Query: 584 KHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 643 +Q F +F +E TPDQ +AI+ VL DM MDRL+CGDVG+GKTEVA+RAAF Sbjct: 626 SPPDSYFQKFEATFSYEETPDQMRAIDDVLDDMASRRPMDRLICGDVGYGKTEVALRAAF 685 Query: 644 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK 703 AV + KQVA+LVPTT+LA+QHY +F +RF +PV +E +SRF++ +QT +L + G Sbjct: 686 KAVMDGKQVAMLVPTTVLAEQHYQSFTERFEGFPVVVETLSRFKTPAQQTLVLKGLKNGT 745 Query: 704 IDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTL 763 +D+++GTH+LLQSDV F+DLGLL++DEEHRFGV+HKER+K MR +VD+LTLTATPIPRTL Sbjct: 746 VDVVVGTHRLLQSDVAFRDLGLLVIDEEHRFGVKHKERMKEMRVSVDVLTLTATPIPRTL 805 Query: 764 NMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQ 823 +MA++G+RDLS I TPP R A++TF+ +YD +REA+ RE+ R GQV++++N V++I Sbjct: 806 HMALAGIRDLSTIETPPQDRHAIETFICKYDEFTIREAVYRELRRSGQVFFVHNHVQSIY 865 Query: 824 KAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 + A + L+PEA+IA+ HGQM+ER+LE+VM DF ++ +VLVCTTIIE+G+DIP ANTI Sbjct: 866 QTANAIGRLIPEAKIAVAHGQMKERDLEKVMLDFIRRKIDVLVCTTIIESGLDIPAANTI 925 Query: 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGF 943 II RAD FGLAQ++QLRGRVGRS QA+A+LL P ++ DAQKRL A+ +LGAGF Sbjct: 926 IINRADKFGLAQIYQLRGRVGRSSEQAFAYLLIPGEHLISRDAQKRLRALLDFSELGAGF 985 Query: 944 ALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTE 1003 +A +DL+IRG G +LG QSG + +G+ LY+ELLE + +K + S E Sbjct: 986 KIALNDLQIRGGGTILGSSQSGHIAAVGYELYLELLEKTIKEMKGEE----RETESIDPE 1041 Query: 1004 VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDI 1063 + + + + LP+ FIPD + RL YKR+A+ ++++ E DR+G P+ AR L+ + Sbjct: 1042 INVPLSAFLPETFIPDKDQRLIAYKRLATLAEPAAVDDLAGEWRDRYGPFPEGARNLVML 1101 Query: 1064 ARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQ 1123 A++R ++LG+ +L+ ++ + FA + V+ + L ++ + ++ R+K Sbjct: 1102 AKMRLLFKRLGVVRLDRDKDFFSLHFAPRVSVD--RVAAFLGEKKCTFVVETDRRVKVEI 1159 Query: 1124 DLSERKTRIEWVRQFMRELEEN 1145 ++ +++ ++EL E Sbjct: 1160 WGRHLAQQVLRLKRILQELAER 1181 >UniRef50_Q0F085 Transcription-repair coupling factor n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F085_9PROT Length = 1109 Score = 1074 bits (2778), Expect = 0.0, Method: Composition-based stats. Identities = 436/1131 (38%), Positives = 640/1131 (56%), Gaps = 47/1131 (4%) Query: 23 TGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT---DQMVMNLADWETLPYD 79 + A +A++A V I PD+++ +L +E++ F Q + + WE LPYD Sbjct: 12 SPPGLAWQLAQLA-TTDRFTVWICPDLRSYRQLAEEVAFFLRDQPQCLWRMPAWEVLPYD 70 Query: 80 SFSPHQDIISSRLSTLYQLPT--MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLS 137 SPH I+ R +TL +L +G+L+ + +QR+ P + H +K G L Sbjct: 71 RVSPHHGIVGERFATLARLLNTPAPQGLLLTALPAWLQRIAPPEVVAAHVWQIKPGDMLD 130 Query: 138 RDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDV 197 AL+++L AG D+V+ GE+A RG L D++P E P R+D F D+I+S+R FD Sbjct: 131 IAALKSRLAEAGMSPADRVLAQGEFAARGGLFDVWPATEETPLRIDMFGDDIESIRRFDP 190 Query: 198 DSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGI 257 +SQR+ E + A +P E D+ E F + +R F R + V G GI Sbjct: 191 ESQRSGESLSAFTSVPVREVILDQRGRECFAAAFRTRFPHLRKH-PMLSSVQAGRPHPGI 249 Query: 258 EYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPP 317 E PL + + L Y P ++ + D++ F +FE P + P Sbjct: 250 EALLPLAY-DNTARLSDYLPDGAVIYSVRDIDVRRSAFAEQVRGQFE-MVRSSTEPSISP 307 Query: 318 QSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKF 377 Q L+ + +E + AA + + P L A +K PL ALR Sbjct: 308 QELYAVDTAIRAESLS--------------AARPAIRIEPAPSLIDYADKKQPLHALRDA 353 Query: 378 LE---TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGF 434 L + G++E + E A L + IG + GF Sbjct: 354 LTKQLNHGWKIELIAHGLGQQERMLEACAE----------LSDTFAGAISSCIGYLDTGF 403 Query: 435 VDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYA 494 + L+ +LLG+R+ R+R+ ++ D + +LAEL G PVVH +HGVGRY Sbjct: 404 ALPQQKRLLLTGRELLGQRLPRKRRSGPAILHAD-IFSSLAELKPGDPVVHEDHGVGRYH 462 Query: 495 GMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRAR 554 G+ T++ G +++ + YA+ A ++VPV L + RY G E+ L+KLG + W R R Sbjct: 463 GLETIDEDGDLADFIKIEYADKAHVFVPVEELARLHRYTG--EDAPALNKLGSEKWKRTR 520 Query: 555 QKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQ---YQLFCDSFPFETTPDQAQAINA 611 ++ + +A EL+DI A R + Y+ F FPFE T DQAQAI+A Sbjct: 521 ERVKRDLLAMAHELIDIEAARTSASRPPCLLQGPLLDAYEEFAARFPFEETDDQAQAIDA 580 Query: 612 VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRD 671 VL+D+ MDR++CGDVGFGKTEVAMRAAF+ ++ +QVAVL PTT+LA QHY +F + Sbjct: 581 VLTDLALDKPMDRVICGDVGFGKTEVAMRAAFVVAESGRQVAVLAPTTVLANQHYASFAE 640 Query: 672 RFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEE 731 RF +++ MISR + KE QI +A G I I++GTH+LL +F DLG++IVDEE Sbjct: 641 RFIGTDLKVAMISRLQGKKEVEQICRGLAGGDIRIIVGTHRLLSDTFEFADLGMVIVDEE 700 Query: 732 HRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVR 791 RFGV+HK+++K++ A+VD+LTLTATPIPRTL+ MSG+R +SII+TPPA R A++T V Sbjct: 701 QRFGVKHKQKLKSLHASVDLLTLTATPIPRTLHQTMSGLRSVSIISTPPAEREAIRTMVS 760 Query: 792 EYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELE 851 +D + REAI RE+ RGGQVYYL+N V++I++ RL E VPEA I I HGQM EL+ Sbjct: 761 SFDPHIAREAIRRELYRGGQVYYLHNHVQSIERITARLREDVPEAEIGIAHGQMTPAELD 820 Query: 852 RVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAY 911 R M F+ R ++LVCTTIIE+G+D+ ANT+I+ERAD GL+QLHQ+RGRVGRSH QAY Sbjct: 821 RQMLAFYEGRLHILVCTTIIESGLDVANANTLIVERADLLGLSQLHQIRGRVGRSHRQAY 880 Query: 912 AWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIG 971 A+L TP +AMT DA++RL+AIA +LGAGF LA D+EIRGAG LLG EQSG ++ IG Sbjct: 881 AYLFTPDARAMTADARERLQAIAEHSELGAGFLLARQDMEIRGAGNLLGAEQSGRIDEIG 940 Query: 972 FSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIA 1031 +Y+++L +AV + Q ++ L + ++LP D++P RL+ Y+RIA Sbjct: 941 LDMYLDMLSDAVAEARGK-----MPKPKQPLDMHLGVNAILPPDYMPQAGERLNLYRRIA 995 Query: 1032 SAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAE 1091 A ++++ + E+ DRFG +PD A+ L+ AR+R +AQ L + + G + F Sbjct: 996 RADDDSQITLLFEEMTDRFGHMPDEAKYCLENARIRWRAQALHLSGIRAGSLGLRLSFTA 1055 Query: 1092 KNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 + + P L +QK+PQ +RL L + ++ R++ F+ EL Sbjct: 1056 SSPIEPTSLFMRVQKEPQRFRLTPDGNLTLLHSSENQRERLKECIAFLDEL 1106 >UniRef50_A4XIS4 Transcription-repair coupling factor n=2 Tax=Clostridia RepID=A4XIS4_CALS8 Length = 1143 Score = 1072 bits (2772), Expect = 0.0, Method: Composition-based stats. Identities = 383/1156 (33%), Positives = 619/1156 (53%), Gaps = 33/1156 (2%) Query: 1 MPEQYRYTLPVKAGE-QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI 59 + E + + L+ L A LV I ++ V+ I + Sbjct: 8 LDEFLKIEKAISKKSLPILVTNLGEMGKALLVHAICQKFNKKVLFITHQKSKSE-WEKRF 66 Query: 60 SQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCP 119 D V+ L + E +SF+ +D R ++ VLI+ L+++ Sbjct: 67 KNLFD-KVIVLQERENPLINSFAKSKDSEIQRAEEFVRIFEEGFDVLILSPQNLLEKY-- 123 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 S +L++++ + L + T L GY V V + G+++ +G ++D++P+ S+ P Sbjct: 124 -SDFKFESLILEENKELGFEEFLTTLTRYGYERVKVVEKKGQFSQKGGIVDIYPIFSKYP 182 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTD--------KAAIELFRSQW 231 R++FF D ID++R FDV++Q++ E V + + A E+ K + + Q Sbjct: 183 VRIEFFGDTIDTIRYFDVETQKSFERVCYVKIYKACEWDLSIDFSDGIKKIVADFKKLQN 242 Query: 232 RDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETS 291 + + +++ E ++ V G I+ P ++ + +F F ++++ Sbjct: 243 KLKGDARKNLEESFKDVIDGAELK-IDRLYPYYY-QNFRSIFDIFGDCFVIIDEYTQVYG 300 Query: 292 AERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANA 351 + + + ++ L + +V ++ +L + +Q + + Sbjct: 301 SLKTFEEQTEDLYKDLLEKGYVLTKMAGCYFKVYDILEKLSSSIILQTFAQSIKEIQVKD 360 Query: 352 NLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQR 411 F L ++ QK L K+ ++ + SE E L L + +I + Sbjct: 361 IFSFNNLREIPSYNGQKELLIEDIKYYQSKGYLINVFAGSETSLEDLKSELEKSRIEFNK 420 Query: 412 IMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLI 471 + G YL+ + E G + + + +R + Sbjct: 421 ADEVLTDRQ-GVYLLPRSVEKGIEIQNLKWVCLS---FFNVEKKKGKDVKKRPKSKKETF 476 Query: 472 RNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISR 531 + +L G VVH +G+G++ G + G+T EYL L YAN++ LYVP ++L +I + Sbjct: 477 YTIEDLKYGSYVVHRTYGIGKFLGFEKITVEGVTKEYLKLEYANNSYLYVPTTNLDVIEK 536 Query: 532 YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 591 Y G + L KLG W + +QK + + VA +++++YA+R K+GF F D + Sbjct: 537 YIGTDDSEPKLSKLGTLEWQKQKQKVRKSLEVVAKDIVELYAKRQLKKGFKFSPDTIWQK 596 Query: 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ 651 F + FP+ T Q QAI + DM MDR++CGDVG+GKTEVAMRAAF AV + KQ Sbjct: 597 EFEEKFPYTETEGQLQAIEEIKKDMESEKPMDRILCGDVGYGKTEVAMRAAFKAVMDSKQ 656 Query: 652 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 711 VAVLVPTT+LAQQHY F R ++P+ IE++SR +S +Q +IL + +G IDI+IGTH Sbjct: 657 VAVLVPTTILAQQHYMTFVQRMKDFPITIEVLSRLKSESQQKKILKALKDGTIDIIIGTH 716 Query: 712 KLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR 771 +LL +DVKFKDLGLLI+DEEH+FGV HKE+IK ++ NVD+LTLTATPIPRTLNMA+ G+R Sbjct: 717 RLLSNDVKFKDLGLLIIDEEHKFGVEHKEKIKKLKENVDVLTLTATPIPRTLNMALLGIR 776 Query: 772 DLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 831 DLSII PP R V+TFV EY+ V++EAIL+E+ RGGQV+YLYN V++I++ RL Sbjct: 777 DLSIIEDPPEDRFPVQTFVMEYNEKVIKEAILKEVSRGGQVFYLYNRVKDIEEVVNRLQA 836 Query: 832 LVPE-ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 L+ E +IA HGQM ER+LE V+ DF + +++VLVCTTIIE+G+D+P NT+I+E AD Sbjct: 837 LLGEDIKIAYAHGQMDERQLEEVLIDFINGKYDVLVCTTIIESGVDMPNVNTLIVEDADR 896 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 GLAQL+QLRGRVGRS+ AYA+ K ++ +A KRL AI +LG+GF +A DL Sbjct: 897 LGLAQLYQLRGRVGRSNKLAYAYFTFRKDKVLSEEAAKRLSAIKEFTELGSGFKIAMRDL 956 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS 1010 EIRGAG ++G+ Q G + +G+ +Y+ LL + LK E + ++++R+ + Sbjct: 957 EIRGAGSIVGKLQHGHINAVGYDMYIRLLSEEIRRLKGE-----EIQPEIEPQIDIRVNA 1011 Query: 1011 LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQA 1070 + ++I D R++ YK+I+S T+ +++EI ELIDRFG +P L+ IA ++ Sbjct: 1012 YISSEYIDDDKERINMYKKISSIDTKEDVQEIYDELIDRFGDIPKEVDNLIKIAYIKFLC 1071 Query: 1071 QKLGIRKLEGNE-KGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERK 1129 ++LGI + N+ + ++F + ++ + LL ++ Y L F K Sbjct: 1072 KRLGILSISQNDSEKVKLQFVAQENI--LLIKTLLCEKGILYSEGKDGTLIFSLS----K 1125 Query: 1130 TRIEWVRQFMRELEEN 1145 ++++ + +L E Sbjct: 1126 DSLDFLVNLLEDLVEK 1141 >UniRef50_C9KMW0 Transcription-repair coupling factor n=3 Tax=Veillonellaceae RepID=C9KMW0_9FIRM Length = 1129 Score = 1072 bits (2772), Expect = 0.0, Method: Composition-based stats. Identities = 374/1130 (33%), Positives = 596/1130 (52%), Gaps = 70/1130 (6%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADW 73 + L+ L G+ VA + ++ ++ +++S + ++ L + Sbjct: 26 RESLIYGLGGSQKHAAVAACYAALPQMMAILCHSAESLADWKEDLSLLLPEVPIVELPEV 85 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKG 133 +T + + Q+ + R+ L +L + +++ +Q+ + +L ++ G Sbjct: 86 DTFDVKAAAKSQERAARRMEVLGRLVRGEHIIVLARTEAAVQKGMGRNEFKRLSLTLRMG 145 Query: 134 QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193 + L R+ L +L GY H ++V G+++ RG ++D+F + + +P R+++FDDEIDSLR Sbjct: 146 EVLPREELLERLVDLGYEHAEEVERVGQFSVRGGIVDIFAINAAVPVRVEYFDDEIDSLR 205 Query: 194 VFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTL 253 FD+D++R+ + V A ++P Q Sbjct: 206 EFDLDTKRSTKNVGAATIMP-------------------------------LAQTDASGK 234 Query: 254 PAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRP 313 P + T+L + R + + Sbjct: 235 PELFLSYLE--------------GKGTVLFDEPTRIRDTIRTMVKENPDIKGKI------ 274 Query: 314 LLPPQSLWLRVDELFSELKNWPRVQ--LKTEHLPTKAANANLGFQKLPDLAVQAQQKAPL 371 +EL V L + +P A N+G + Q Sbjct: 275 --------FSWEELLQAAHGNRIVYMALLLQQVPGADAVENIGVTATTMTPFRRQMDLLE 326 Query: 372 DALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAE 431 + ++L V+ + + + +L E A +I + D + G+ Sbjct: 327 NEANRWLAQ-KQRVLVLLSDKEKANSLREFFAHRRIPSLVENAAEPFRDDAINIRRGSLL 385 Query: 432 HGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVG 491 GF L ++ E D+ G +R R+ + I + ++ G VVH HG+G Sbjct: 386 TGFEMASARLVVVTEKDIFGR--HKRHTAVRKHSDYGEKISHFRDIKPGDYVVHESHGIG 443 Query: 492 RYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWS 551 +Y G+ TL+ GGI +YL + YA D KL+VP + L+ +Y G + LH++GG W Sbjct: 444 KYLGVETLDVGGIHKDYLHIQYAGDDKLFVPTDQVGLLQKYIGSEGDVPRLHRMGGTEWV 503 Query: 552 RARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINA 611 +A+ +A + V D+A +L++IYA+R +G AF D + F D+FP+E T DQ +AI Sbjct: 504 KAKARAKKSVEDIAQKLIEIYAKRKDAKGHAFPPDDASQREFEDAFPYEETEDQLRAIAE 563 Query: 612 VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRD 671 + +DM + MDRL+CGDVGFGKTEVA+RAA+ A + KQVAVLVPTT+LAQQHY F Sbjct: 564 IKADMEREKPMDRLLCGDVGFGKTEVAIRAAYKAAMDGKQVAVLVPTTVLAQQHYQTFTT 623 Query: 672 RFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-QSDVKFKDLGLLIVDE 730 RF + I++I RFR+ K+Q + + +V G++DILIGTH +L Q+ VK+KDLGLLIVDE Sbjct: 624 RFNGFAPVIDVICRFRTPKQQKETIEKVRLGQVDILIGTHAILNQNKVKWKDLGLLIVDE 683 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 E RFGV+ K++I+ + A +D+LTL+ATPIPRTL+M++ G RD+SII TPPA R V+T+V Sbjct: 684 EQRFGVKQKDKIRKLAAGIDVLTLSATPIPRTLHMSLVGARDMSIIETPPAERFPVQTYV 743 Query: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 E + ++ AI RE+ RGGQVY++YN V+ I + + + LVPEARI HGQM E L Sbjct: 744 VENNDTIIANAIRREMKRGGQVYFIYNRVDTIDRMRDHIESLVPEARIQTAHGQMPEEML 803 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 E VM DF+ +++L+ T+I+E G+D+ ANTII+ ADHFGL+QL+Q+RGRVGRSHH A Sbjct: 804 EHVMMDFYEGDYDILLATSIVENGLDVANANTIIVYNADHFGLSQLYQMRGRVGRSHHMA 863 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 +A+ + K +T A+KRL+A+ +LGAGF +A DLEIRGAG LLG +Q G + ++ Sbjct: 864 FAYFVYQADKILTETAEKRLQAMKEFAELGAGFKIAMRDLEIRGAGNLLGAQQHGHIASV 923 Query: 971 GFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI 1030 GF +Y +LLE AV+ L+ G+ P + + ++L+ + + FI D ++ Y+RI Sbjct: 924 GFEMYCKLLEEAVERLQNGKAP---EEAPPEPVIDLQTEAYIDGGFIADAMHKIEIYQRI 980 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFA 1090 A+ ++ E+ + ELIDRFG +P LL++AR++ A+ LGIR ++ I F Sbjct: 981 AAIRSNEEIRSLLDELIDRFGDPTEPVMHLLEVARIKNYARDLGIRAIKELPLALDIYFL 1040 Query: 1091 EKNHVNPAWLIGLLQKQPQHYRLDGPTR-LKFIQDLSERKTRIEWVRQFM 1139 K + ++ L + R L+F +K +V + + Sbjct: 1041 PKKRMPAKGMLALANLFGKRMRSLPDKNGLRFTLSDRYKKNITNFVTRLL 1090 >UniRef50_C3RLI7 Transcription-repair coupling factor n=3 Tax=Bacteria RepID=C3RLI7_9MOLU Length = 1144 Score = 1070 bits (2768), Expect = 0.0, Method: Composition-based stats. Identities = 373/1120 (33%), Positives = 610/1120 (54%), Gaps = 13/1120 (1%) Query: 28 ATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDI 87 A LV +++I P+ A L+ +IS ++ + E+ ++ + ++ Sbjct: 33 ALLVTSAFLTLQKDIIVIKPNQYEANLLYQQISLINEKDSLFFPVDESYRIEALASSPEL 92 Query: 88 ISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDS 147 + R+ LYQL T Q +LI L++ + + L +K G ++ L+ L Sbjct: 93 LGQRIDALYQLTTDQPKILITHGQALVRYLPSRQLFLDNCLNLKTGMQIDIYDLQKLLIK 152 Query: 148 AGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVE 207 AGY +V + ++ RG ++D+F + + P R++FFDDEID++R ++ +SQRT+E+V+ Sbjct: 153 AGYTSAPRVDQPFYFSKRGGVIDVFSIQYDNPLRIEFFDDEIDNIRFYNQNSQRTIEKVK 212 Query: 208 AINLLPAHEFPTDKAAIELFRSQWRDTFEVK-RDPEHIYQQVSKGTLPAGIEYWQPLFFS 266 + ++PA + D+ + S+ D + + + + +YQ+ + E + S Sbjct: 213 EVTIIPASDILYDEQEVPAVLSKINDLRDRQIEELDELYQEDYLSKVSIDQENLRNHDTS 272 Query: 267 EPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDE 326 + F+ F L++ D + D ++N + S+ + Sbjct: 273 FTMYGYFNLFNQTASLLDYLDTPLIIQANNHDINFAYKNYLEENHYYYQELASIGKTIKG 332 Query: 327 LFSELKNWPRVQL-KTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPV 385 L + + P ++ ++ F + + ++ +R +L+ V Sbjct: 333 LNLFRDLYEVIDRKSVNFKPFAQSDKDVLFNARAIMINNDDEAMIINQIRAYLKLS--KV 390 Query: 386 VFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALIC 445 V +++ + + + + EL R ++A I DE G + + G + +I Sbjct: 391 VVALDDDHQLKLMTELFDRHEMAYTLIGIKDEIYP-GLNIAVNKIGFGIELVDEKIVIIS 449 Query: 446 ESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGIT 505 ++L R ++ ++++ EL+IG VVH HG+G+Y G+ TLE G Sbjct: 450 ANELFKTRNIKKP--KYFKYKNAKVLKDYQELNIGDYVVHDNHGIGQYLGIKTLEVQGFH 507 Query: 506 GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVA 565 +YL + YA D LY+PV +I +Y+ + ++KLGG W + + KA KV D+A Sbjct: 508 KDYLYVAYAGDDTLYIPVEQFKMIRKYSSNEGKVPKINKLGGSQWQKTKAKARSKVDDIA 567 Query: 566 AELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRL 625 +L++IY+ R + G+AF D E F SF +E T DQ +++ + +DM + MDRL Sbjct: 568 DKLIEIYSARINQPGYAFPSDSEIQLEFERSFGYELTVDQLRSVEEIKADMEKSQPMDRL 627 Query: 626 VCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISR 685 +CGDVGFGKTEVA+RAAF A+ +KQVA L PTT+L+ QHY RF ++PV+I +++R Sbjct: 628 LCGDVGFGKTEVALRAAFKAILGNKQVAFLCPTTILSMQHYKTMIARFKDFPVKIALLNR 687 Query: 686 FRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAM 745 F S KE+ QIL+++ G ID+L+GTH++L D+ FKD+GLL +DEE RFGV+ KE+IK Sbjct: 688 FTSTKEKKQILSDLKLGNIDLLVGTHRILSKDIVFKDIGLLCIDEEQRFGVKQKEKIKEY 747 Query: 746 RANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILRE 805 R +D+LTLTATPIPRTL M++ G+R LS I TPP R V+T+V E +++++++ I RE Sbjct: 748 RKTIDVLTLTATPIPRTLQMSLMGIRGLSQIETPPKNRQPVQTYVIEKNNVLIKQIIERE 807 Query: 806 ILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 865 + R GQV+YLYN I A + VP AR+A+GHGQM + ELE VM F ++ FNVL Sbjct: 808 LARDGQVFYLYNRTSQIANVAYNITLSVPGARVAVGHGQMDKNELEDVMMRFVNKEFNVL 867 Query: 866 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTD 925 VCTTIIETGIDIP ANTII+E AD FGL+QL+Q++GRVGRS+ AYA+LL K + + Sbjct: 868 VCTTIIETGIDIPNANTIIVEDADKFGLSQLYQIKGRVGRSNRGAYAYLLYNPTKVLNEE 927 Query: 926 AQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDA 985 A KRL+AI +LG+G+ +A DL IRG+G++LG QSG +++IGF +YM++L++A++ Sbjct: 928 ASKRLKAIKEFTELGSGYKIAMRDLAIRGSGDILGGTQSGFIDSIGFEMYMKILQDAINE 987 Query: 986 LKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVE 1045 + E V +++ +P D++ +L Y+R+ +AKT + ++ +K E Sbjct: 988 KMGKEDVEAEKEIK---SVNVKVDGYIPHDYVSSDIEKLELYQRLDNAKTISGVDHLKSE 1044 Query: 1046 LIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAE--KNHVNPAWLIGL 1103 ID +G LP+ TL++ +L A I L + I F + +V L L Sbjct: 1045 FIDYYGKLPEEVSTLVEKRKLDILASTEIIENLAEVKGKMEITFTKGYSQNVKGDQLFEL 1104 Query: 1104 LQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELE 1143 + + K + L + +E + Q + L Sbjct: 1105 VNRLFTKPVFR-QLGGKIVIVLPKGDQWLERINQLITTLN 1143 >UniRef50_A5V6G5 Transcription-repair coupling factor n=2 Tax=Sphingomonadaceae RepID=A5V6G5_SPHWW Length = 1195 Score = 1067 bits (2760), Expect = 0.0, Method: Composition-based stats. Identities = 441/1157 (38%), Positives = 631/1157 (54%), Gaps = 61/1157 (5%) Query: 39 AGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQ 97 G +V +A D Q L D F + V+ W+ LPYD SP S RL+TL+ Sbjct: 46 GGRLVFVAADDQAMQSLADAARFFAPELTVLTFPAWDCLPYDRASPALRATSERLATLHA 105 Query: 98 LPTMQ--RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQ 155 L ++ VN + QRV + + G+R+ RD L L + GY D Sbjct: 106 LQGKPRGPVLVATTVNAVTQRVLTPFRIRQLVARLAPGERVDRDRLAAMLQANGYIRTDT 165 Query: 156 VMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAH 215 V E GEYA RG+L+DLFP G RLDFF DEI+S+R FD QRT+ V+ LLPA Sbjct: 166 VTEQGEYAVRGSLVDLFPAGEPHALRLDFFGDEIESVRQFDATDQRTIGPVDGFTLLPAS 225 Query: 216 EFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSY 275 E D+ I+ FR ++R+ F + IYQ VS G AG+++W PLF E L LF + Sbjct: 226 EALLDEETIKRFRGRYRERFGASATGDPIYQAVSDGRRLAGMDHWLPLF-EERLETLFDH 284 Query: 276 FPANTLLVNTGDLETSAERFQADTLARFENRG-----VDPMRPLLPPQSLWLRVDELFSE 330 L++ +AE NR L P L+L DE + Sbjct: 285 LAPEDLILREAGSIKAAEARFEAIADYHANRVRARTTDPGSYRPLEPGELYLAADEWRTA 344 Query: 331 LKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQK-APLDALRKFLE---TFDGPVV 386 + + P + P A +LG D A + Q DA+ + +E VV Sbjct: 345 IADRPIHLVTPFAEPESARVLDLGVDGARDFAPERTQGVNIYDAVIEHVEALGKAGKRVV 404 Query: 387 FSVESEGRREALGELLARIKIA-PQRIMRLDEA--------------------------- 418 + S G RE LLA + + A Sbjct: 405 LASYSTGSRERFAGLLAEHGLDRGDLVDDWQSAITLPLPLAGGGRGVGLPRKENDGAQAG 464 Query: 419 -----------SDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINP 467 L + +HGF +AL+ E D+LG+R+ RR++ + + Sbjct: 465 GPPPPPPASGRGGNMVALAVLPLDHGFTSGD--IALLTEQDMLGDRLVRRQKRKK---SA 519 Query: 468 DTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLH 527 D + LA L G VVH++HG+GRY G+T++ + + LTYA KLYVPV ++ Sbjct: 520 DAFLAELATLSPGDLVVHMDHGIGRYEGLTSIPVAKAPHDCVALTYAGGDKLYVPVENID 579 Query: 528 LISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 587 ++SRY G E L KLGG AW + + E++R++A EL+ A+RA + A + D Sbjct: 580 VLSRY-GAENEGVQLDKLGGVAWQARKARMKERIREIAGELIKTAAERALRPAEAIEPDS 638 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 Y F D FP++ T DQ +AI V+ D+ MDRLVCGDVGFGKTEVA+RAAF+A Sbjct: 639 -GYNEFVDRFPYQETEDQDRAIADVIEDLAAGKPMDRLVCGDVGFGKTEVALRAAFVAAL 697 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 QVA++ PTTLLA+QHY NF +RF PV I +SR SA E + +A+G IDI+ Sbjct: 698 GGMQVALICPTTLLARQHYRNFVERFHGMPVNIGHLSRLVSAGEAKRTKDGLADGSIDIV 757 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 IGTH LL + FK LGL+IVDEE RFGV HKER+KA++ +V +LTLTATPIPRTL MAM Sbjct: 758 IGTHALLAKGIAFKRLGLVIVDEEQRFGVTHKERLKALKTDVHMLTLTATPIPRTLQMAM 817 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 SG+R+LS+I TPP RLAV+T+V +D +V+REA+LRE RGGQ + + ++++ + Sbjct: 818 SGLRELSVIQTPPVDRLAVRTYVAPWDGVVIREALLREHYRGGQSFLVTPRIKDLPDIED 877 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 L + VPE + HGQM E+E M+ F+ ++F++LV TTIIE+G+DIP+ANT+I+ R Sbjct: 878 YLRKEVPEVSYVVAHGQMAAGEVEERMSAFYDKKFDILVSTTIIESGLDIPSANTLIVNR 937 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 AD FGLAQL+QLRGRVGRS +AYA+L T + +T A+KRL + +++ LGAGF +A+ Sbjct: 938 ADRFGLAQLYQLRGRVGRSKTRAYAYLTTG-DRGLTETAEKRLHILQNIDTLGAGFQIAS 996 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR 1007 HDL+IRGAG LLG+EQSG ++ +GF LY +LE A+ KAG + S ++ + Sbjct: 997 HDLDIRGAGNLLGDEQSGHIKEVGFELYQSMLEEAILDAKAGGLADTKR-ESFSPQINVD 1055 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 P L+P+D++PD++ R+ Y+R+ +T E+E ELIDRFG LP + LL + ++ Sbjct: 1056 APILIPEDYVPDLDLRMGLYRRMNEVETRAEIEAFAAELIDRFGKLPAATQNLLTVIEIK 1115 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE 1127 +K + K++ +G ++ F + + L+ + + RL ++L ++ E Sbjct: 1116 LNCRKACVAKIDTGPRGALVTFHNDDFPDLPGLLAYVDRLKDSARLRPDSKLVITRNWPE 1175 Query: 1128 RKTRIEWVRQFMRELEE 1144 R+ Q R L + Sbjct: 1176 PSHRLNGALQLSRGLMK 1192 >UniRef50_Q6MGN1 Transcription-repair coupling factor n=2 Tax=Proteobacteria RepID=Q6MGN1_BDEBA Length = 1172 Score = 1066 bits (2758), Expect = 0.0, Method: Composition-based stats. Identities = 373/1174 (31%), Positives = 617/1174 (52%), Gaps = 43/1174 (3%) Query: 1 MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAER--HAGPVVLIAPDMQNALRLHDE 58 + G+ ++ G + A A +++ + + P +++ + A+ L Sbjct: 10 LESILERAFETTRGKIQVTGAASPLALAYFLSQTYSKKINGLPHLVVVGSHREAVTLQAL 69 Query: 59 ISQFTDQM-VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG-VLIVPVNTLMQR 116 + F L ++ PY P+ +++ R+ L + + + G + I V+ LMQ+ Sbjct: 70 LEFFDPSRQSHILPAFDVSPYSGLYPNTQVVADRVRFLAKAQSAKAGEIFISSVDALMQK 129 Query: 117 VCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176 P L H+ ++ G L + L S GY V + G++A RG ++D++P Sbjct: 130 TLPVKILKDHSKTVRAGDEL-PENLSDYFSSLGYTAAPMVEDKGQFAVRGGIVDIYPPTE 188 Query: 177 ELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE 236 P R+D F D+++SLR F V QR+ +E+++ L PA E E + R + E Sbjct: 189 NQPVRMDLFGDQVESLRHFSVADQRSSDEIQSFVLTPAREVLYRDETHERLLQRVRASLE 248 Query: 237 VKR----DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPA--NTLLVNTGDLET 290 ++ + E + + GIE+ P F+ E L +FP N ++ ++ Sbjct: 249 GRKVDKAEAEETLRSLVLKNAFPGIEFLLPYFYGE-LATPADHFPGALNLWFLDPVEISR 307 Query: 291 SAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAAN 350 A+ A+ A +RP L + +++ + L L + E+ + ++ Sbjct: 308 CADEMWAELKADHRTSDAHVIRPEL--EDIYVNFEALAYPLNSRQVYFSSLEYFDEENSD 365 Query: 351 ANL---------GFQKLPDLAVQAQQKAPLDA---LRKFLETFDGPVVFSVESEGRREAL 398 + F L ++ A L ++ + S +++ + L Sbjct: 366 DSRVEYRTAMTQDFTNLALANAVGTEQWLQAATNKLHRW-RDEGYRIFVSTKNQSHIDRL 424 Query: 399 GELLARIKIAPQRIMRLD----------EASDRGRYLMIGAAEHGFVDTVRNLALICESD 448 + ++++ R + + +++ + + + D Sbjct: 425 SLVFEKLELKAVRTSSDEYRWDSWLQEQDREQNIVHIVPRYLAESLRLEEEKIIFLRDED 484 Query: 449 LLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY 508 G++ + + + +L G VVH +HG+G+Y G+ + G+ EY Sbjct: 485 FYGKKQRAKESSGAQDFQKQAKRLSFGDLKPGDLVVHTKHGIGQYEGLKIMNISGVESEY 544 Query: 509 LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAEL 568 + + Y + KLY+PV + + +++G L KLGG AW + + K VRD+AA+L Sbjct: 545 IQVGYKDKDKLYLPVYRVGQLQKFSGAGTSI--LDKLGGTAWEKTKAKVKSHVRDIAADL 602 Query: 569 LDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCG 628 L +YA+RA AF ++ +F + FP+E T DQ +AIN + D+ MDRLVCG Sbjct: 603 LTLYAKRAEMHRPAFVIKEDEVLMFENGFPYEETDDQLRAINDIRKDLKSTKPMDRLVCG 662 Query: 629 DVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRS 688 DVGFGKTEVAMRAAF A+ KQVAVL PTT+L QH++ F+ RF WPV I +++RF + Sbjct: 663 DVGFGKTEVAMRAAFFAIQARKQVAVLAPTTVLTFQHFETFKKRFEGWPVDIRVLNRFVT 722 Query: 689 AKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRAN 748 E + L ++ +GK+D+++GTHKLL S + +KDLGLLI+DEE +FGV HKE+IK ++ + Sbjct: 723 PAEVKKTLQDLKDGKVDLIVGTHKLLGSSIAYKDLGLLIIDEEQKFGVTHKEKIKKIKTS 782 Query: 749 VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILR 808 VD LTL+ATPIPRTLNMA+ G+RDLS+I T P RL +TFV ++D +R+AI EI R Sbjct: 783 VDTLTLSATPIPRTLNMALVGIRDLSLINTAPVDRLPTRTFVTKFDPETIRKAITAEISR 842 Query: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868 GGQVY+++N +E+I + + ++VPEARI + HGQM E ELE+ M F H +VLVCT Sbjct: 843 GGQVYFIHNRIESIYGLVDEIRQIVPEARIRVAHGQMEEHELEKAMLAFFHHEIDVLVCT 902 Query: 869 TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQK 928 I+E+G+D+P ANT+ I+ A FGL+QL+QLRGRVGRS +AY +L+ P + + Q+ Sbjct: 903 AIVESGMDVPRANTMFIDTAHLFGLSQLYQLRGRVGRSKTRAYCYLMMPRNHKLDKEQQE 962 Query: 929 RLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKA 988 RL+ I LG+G +A +DLE+RG+G +LGEEQSG + ++G+ +YM+LL A+ K Sbjct: 963 RLKIIQENTALGSGIKIAQYDLELRGSGNILGEEQSGHVNSVGYEMYMDLLNEALAEAKG 1022 Query: 989 GREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELID 1048 ++ E+ L++P+L+PD +I D+ RL +YK +A + +L+ I+ EL D Sbjct: 1023 ESVEDMD----LDPELNLKIPALIPDAYIKDIRIRLGYYKALADITSNEDLDRIEEELRD 1078 Query: 1049 RFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQP 1108 +FG +P+ L+ + +R+Q ++LG+R + K + F EK ++P +I L ++ Sbjct: 1079 QFGPIPEQTVNLMGLMLIRRQCKELGVRDISAGLKSISLIFTEKTKLSPEKVIQLAIRES 1138 Query: 1109 QHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 + Y L RL E + +R + Sbjct: 1139 KKYSLTPDNRLNIKMSTITWSAVHEEIDALLRLI 1172 >UniRef50_C0R051 Transcription-repair coupling factor n=3 Tax=Brachyspira RepID=C0R051_BRAHW Length = 1247 Score = 1066 bits (2756), Expect = 0.0, Method: Composition-based stats. Identities = 367/1189 (30%), Positives = 617/1189 (51%), Gaps = 71/1189 (5%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 E + + L L G + + + + + +++I + +A+ L ++ F Sbjct: 20 EFLNFDIKTVKS----LTGLKGGSDSLFFSSLFNK-NESILIIKENESDAMLLSQSLN-F 73 Query: 63 TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSF 122 + D++T+P+ SP DI R++ LY+L ++ ++I VN + +++ Sbjct: 74 YNIPNYYFPDYDTVPFTKMSPVSDIAQDRINILYKLINKEKCIIITTVNAVTRKLPNRDD 133 Query: 123 LHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRL 182 L + + G +L D LR L GY +V E G + RG+++D+F + P R+ Sbjct: 134 LKKLPIHLNVGDKLDLDNLRLTLYDLGYVIEREVAEKGTASVRGSIVDVFSVEYNNPIRI 193 Query: 183 DFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPE 242 + FDDEI+S+R+F+++ R+ + VE I + P E +A+ F + + Sbjct: 194 ELFDDEIESIRLFNIEDGRSFKSVENIIIYPVRETIYSDSAVSEFINN-------NEIED 246 Query: 243 HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG---------------- 286 + + K AG E P+F+ + L +F YF + + Sbjct: 247 ELKDNIIKRKYFAGSENLLPIFYKD-LETIFDYFDYGYIFTDDALKLKNKFITIIDTIKE 305 Query: 287 ---------DLETSAERFQADTLARFE-NRGVDPMRPLLPPQSLW-----------LRVD 325 ++ + D+ E + + P + ++ R+ Sbjct: 306 NFNDIDNIFNIIEDIYKLYIDSNYFAEIVKKAINISPFITDIDIYKFHFEEGISFKSRLT 365 Query: 326 ELFSELKNWPR----VQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETF 381 + +K + + L T H + P + + + + ++ E Sbjct: 366 DFLDYVKEYREKDYLIILSTGHNDQALRFYKIMQDLSPTIITENDIED-TEDIKDKEENS 424 Query: 382 DGPVVF--SVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVR 439 D + E++ E E++ + I + ++ Y++ + GF+ Sbjct: 425 DNKEINNDIKENDDNNEDNKEIILEDTNKKEEIKKDYSKNENNFYIITAQSSSGFIKDDI 484 Query: 440 NLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTL 499 I + ++ G + + R+ + N LI +L++G VH+ +G+G+Y G+T Sbjct: 485 KTIFIADWEVFGRKRKKVRKIPKVNKN---LIETFVDLNVGDYAVHVNYGIGKYLGLTRK 541 Query: 500 EAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAE 559 + G +Y+ L YA KLY+PV ++ + +Y G E L +LGG AW + + KA E Sbjct: 542 MSNGKEKDYITLEYAKGDKLYIPVEQMNFVQKYISGHGEAPKLTQLGGSAWDKIKSKARE 601 Query: 560 KVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQP 619 A EL+ +YA R+ G + D + F SF +E T DQ +AIN + DM Sbjct: 602 DALATARELIKLYAIRSNIRGNVYGPDTQWQDDFEASFRYEETVDQLRAINDIKEDMESG 661 Query: 620 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 MDRLVCGDVGFGKTEVA RA F A+ KQ A+L PTT+L+QQHY+N + RF ++P++ Sbjct: 662 KMMDRLVCGDVGFGKTEVAFRAVFKAIMAGKQCAILCPTTILSQQHYNNAKKRFEDFPIK 721 Query: 680 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK 739 IE+++RF ++K+ + + EG D+++GTH LL D++FK+LGL+++DEE RFGV+HK Sbjct: 722 IEVLNRFVTSKQAKRNKELLKEGSCDLIVGTHMLLSKDIEFKNLGLIVIDEEQRFGVKHK 781 Query: 740 ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVR 799 E +K +R D+LTL+ATPIPRTLNMA++G+RD+SII TPP R+ VKTFV E+ V Sbjct: 782 EALKKLRLETDVLTLSATPIPRTLNMALTGIRDISIIETPPLNRIPVKTFVTEFSEDAVV 841 Query: 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 AI RE+ R GQV+YLYN ++ I+ A + +L P+ARI + HG+M +LE++M DF + Sbjct: 842 NAIERELKREGQVFYLYNRIDTIESFALMIKKLCPKARICVAHGRMTGHQLEKIMGDFIN 901 Query: 860 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 ++++LV TTIIE GIDIP ANTI+I+ A+ GL++L+QLRGRVGRS +AYA++ P Sbjct: 902 HKYDILVSTTIIENGIDIPNANTILIDNANKLGLSELYQLRGRVGRSDREAYAYMFYPSD 961 Query: 920 KAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELL 979 A+T A KRLEAI+ DLGAGF +A DLEIRGAG +LG+EQSG + +G+ LY ++L Sbjct: 962 LALTEVAYKRLEAISEHTDLGAGFKIAMRDLEIRGAGNILGKEQSGMIYQVGYELYTQML 1021 Query: 980 ENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENEL 1039 E A + K + + T ++L+ +PD +I D ++S YK I ++ + ++ Sbjct: 1022 EEAANEYKGEIK-----EVTFDTVIDLKHNLFIPDSYIADSKEKISAYKLIMRSQRDEDI 1076 Query: 1040 EEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAW 1099 E K +ID++G LP + DIA+++ +++ I + ++ + + ++ Sbjct: 1077 EYSKEFMIDKYGKLPKELEDIFDIAKVKIILKRMRILSVIEGHYNIYLKLDKLSKIDTDK 1136 Query: 1100 LIGLLQKQPQHYRLDGPT-----RLKFIQDLSERKTRIEWVRQFMRELE 1143 LI L+ + D + ++ + ++E +R + +E Sbjct: 1137 LINLINTKNSGVYFDKDNLNQLIIPVIHEKENDIEWKLEKIRNVILAIE 1185 >UniRef50_UPI000196BD8D hypothetical protein CATMIT_02256 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BD8D Length = 1150 Score = 1066 bits (2756), Expect = 0.0, Method: Composition-based stats. Identities = 362/1130 (32%), Positives = 601/1130 (53%), Gaps = 23/1130 (2%) Query: 23 TGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFS 82 + + A L+A + +++I + A L+ +++ V+ E+L +S + Sbjct: 31 STSDEAYLIAGSFWHNPRKILIIKNNQYEAFNLYKTLTELV-NQVVYFPADESLRVESVA 89 Query: 83 PHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALR 142 +++ R++ LY + + + + ++++ + + P + +KKG + L+ Sbjct: 90 YSYELLGERINALYAMTQDKPMICVCHMHSMTRYITPVDLFKKSIISLKKGDTIDPLELK 149 Query: 143 TQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRT 202 L GY++ +V Y+ RG +LD++ + + P R++FFDDEI+ + +D DSQR Sbjct: 150 KMLQFIGYKNTQRVDSPFYYSRRGEVLDVYTIQYDHPVRIEFFDDEIEEISFYDKDSQRR 209 Query: 203 LEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQP 262 ++E+I++LPA + + + + + + + ++ + T IE + Sbjct: 210 TNKIESIDILPATDMMYEDDGLSQVEASIQTLKDKMTVKDDFKDELEQ-TYALDIESLKA 268 Query: 263 LFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWL 322 ++ + FP +++ T A LA ++ + + + Sbjct: 269 HDYNPRIYQYLGLFPETATIMDYARDYTIITASLASILASYKTYMEENYLYYHELEEIGQ 328 Query: 323 RVDELFSELKNWPRVQLKTEHLPTKAANAN---LGFQKLPDLAVQAQQKAPLDALRKFLE 379 + L +L N P+ LK +++ N + F P + A +K + L+ L Sbjct: 329 MIRGL--KLINNPQTILKRQNVDFVRFRENDQQIMFMTQPVMISMANEKIFISQLKDLLT 386 Query: 380 TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVR 439 V+ V+ + + + L L I ++ D G L +G G Sbjct: 387 --YNRVMIGVDEKRQIDVLVNLFTDHAIPFTLTSATNKIYD-GVNLFLGHLPCGMNFVEE 443 Query: 440 NLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTL 499 L+ +L + +++ R T I + EL +G VVH +G+G+Y G+ TL Sbjct: 444 KTVLLTSQELFKVQETKKKYIKYRD---ATKISDYNELKVGDYVVHDTNGIGQYMGIETL 500 Query: 500 EAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAE 559 G+ +YL + Y + LYVPV LI +Y+ + +H LG W++ + + + Sbjct: 501 VVDGVHKDYLHIAYKGNDILYVPVEQFQLIRKYSSRDGKPPRIHALGSPKWAKEKARVRQ 560 Query: 560 KVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQP 619 KV +A +L+++YA+R + GFAF+ D + F F +E TPDQAQA+ + DM P Sbjct: 561 KVDGLADDLINLYAERMRQPGFAFEPDGDLQLEFESEFGYELTPDQAQAVEEIKKDMETP 620 Query: 620 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 MDRL+CGDVGFGKTEVA+RA F A+ + KQ A L PTT+L+ QHY + RF +PV Sbjct: 621 RPMDRLLCGDVGFGKTEVALRACFKAIVSKKQCAFLCPTTILSSQHYRTMQKRFEKFPVN 680 Query: 680 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK 739 I +++RF + KE+ QIL+++ EG ID+L+GTH++L DV+FKDLGLL +DEE RFGVR K Sbjct: 681 IALLNRFTTTKEKKQILSDLKEGNIDLLVGTHRILSKDVEFKDLGLLCIDEEQRFGVRQK 740 Query: 740 ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVR 799 E+IK +R +D+LTLTATPIPRTL M++ G+R LS I TPP RL V+T+V E +++ Sbjct: 741 EKIKNLRKTIDVLTLTATPIPRTLQMSIMGIRGLSQIETPPLNRLPVQTYVSEKSWALIK 800 Query: 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 + I RE+ R GQV+YL+N ENI + A L L+P ARI +GHGQM + ELE VM DF Sbjct: 801 QVIERELSRNGQVFYLHNRTENIYEIASTLQTLLPHARIGVGHGQMDKTELEDVMTDFVE 860 Query: 860 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 +++++LVCTTIIETGIDIP ANTIIIE AD FGLAQL+Q++GRVGRS AYA+LL Sbjct: 861 KKYDILVCTTIIETGIDIPNANTIIIENADKFGLAQLYQIKGRVGRSARIAYAYLLYTKD 920 Query: 920 KAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELL 979 +AMT +AQKRL AI LG+G+ +A DL IRG+G++LG EQ+G ++ +GF +YM++L Sbjct: 921 RAMTEEAQKRLTAIKEFTQLGSGYKIAMRDLSIRGSGDILGGEQAGFIDQVGFDMYMKIL 980 Query: 980 ENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENEL 1039 ++A+D + + + + +P+D++ +L Y+R+ A L Sbjct: 981 QDAIDEKQGKIKED-----DTVPSRNISVDGYIPEDYVESDMEKLELYQRVYKANDLEAL 1035 Query: 1040 EEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAE--KNHVNP 1097 + ++ EL D +G+LP R ++ R + I ++ +G + F++ ++ Sbjct: 1036 KRVEQELTDLYGVLPSQVRNIVVKRRFDILSHDPLIEDVKDGSQGLEMRFSKVFLEDLDG 1095 Query: 1098 AWLIGLLQKQPQHYRLD-GPTRLKFIQDLSERKTRIEWVRQFMRELEENA 1146 + + ++ L + + + +F+ + + Sbjct: 1096 QKFFAYVNHMFKKPQMKYTEGMLTIVSGMEPY--YVSASTEFLDTVLKQY 1143 >UniRef50_P64327 Transcription-repair-coupling factor n=40 Tax=Corynebacterineae RepID=MFD_MYCBO Length = 1234 Score = 1065 bits (2754), Expect = 0.0, Method: Composition-based stats. Identities = 390/1145 (34%), Positives = 582/1145 (50%), Gaps = 49/1145 (4%) Query: 5 YRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD 64 ++ + G L + A+ LVA R P++++ + A L E+ Sbjct: 26 FQQLMQRAGGRPDELTLIAPASARLLVASALARQG-PLLVVTATGREADDLAAELRGVFG 84 Query: 65 QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQR-------GVLIVPVNTLMQRV 117 V L WETLP++ SP D + +RL L +L GV++ V +L+Q + Sbjct: 85 DAVALLPSWETLPHERLSPGVDTVGTRLMALRRLAHPDDAQLGPPLGVVVTSVRSLLQPM 144 Query: 118 CPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE 177 P + L + G D + +L Y VD V GE+A RG +LD+F +E Sbjct: 145 TPQLGMME-PLTLTVGDESPFDGVVARLVELAYTRVDMVGRRGEFAVRGGILDIFAPTAE 203 Query: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVE--AINLLPAHEFPTDKAAIELFRSQ----W 231 P R++F+ DEI +R+F V QR++ E++ + E + Sbjct: 204 HPVRVEFWGDEITEMRMFSVADQRSIPEIDIHTLVAFACRELLLSEDVRARAAQLAARHP 263 Query: 232 RDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT--LLVNTGDLE 289 V + ++++G G+E P+ +S+ L P T L+ + + Sbjct: 264 AAESTVTGSASDMLAKLAEGIAVDGMEAVLPVLWSDGHALLTDQLPDGTPVLVCDPEKVR 323 Query: 290 TSAERFQADTLARFENR------GVDPMRPLLPPQSL----WLRVDELFSELKNWPRVQL 339 T A E G + + + L ++ +D++ + Sbjct: 324 TRAADLIRTGREFLEASWSVAALGTAENQAPVDVEQLGGSGFVELDQVRAAAARTGHPWW 383 Query: 340 KTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALG 399 L + + L + P + + A+ + G G + Sbjct: 384 TLSQL-SDESAIELDVRAAPSARGHQRDIDEIFAMLRAHIATGGYAALVAPGTGTAHRVV 442 Query: 400 ELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQ 459 E L+ + ++ G G + NL +I E+DL G RV+ Sbjct: 443 ERLSESDTPAGMLDPGQAPKPGVVGVLQGPLRDGVIIPGANLVVITETDLTGSRVSAAEG 502 Query: 460 DSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA----- 514 I + L G VVH +HG+GR+ M GG EYL+L YA Sbjct: 503 KRLAAKRR--NIVDPLALTAGDLVVHDQHGIGRFVEMVERTVGGARREYLVLEYASAKRG 560 Query: 515 ----NDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLD 570 N KLYVP+ SL +SRY G + L +LGG W+ + KA VR++A EL+ Sbjct: 561 GGAKNTDKLYVPMDSLDQLSRYVG--GQAPALSRLGGSDWANTKTKARRAVREIAGELVS 618 Query: 571 IYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDV 630 +YA+R A G AF D D+F F T DQ AI V +DM +P+ MDR++CGDV Sbjct: 619 LYAKRQASPGHAFSPDTPWQAELEDAFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDV 678 Query: 631 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAK 690 G+GKTE+A+RAAF AV + KQVAVLVPTTLLA QH F +R + +PV I+ +SRF A Sbjct: 679 GYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFGERMSGFPVTIKGLSRFTDAA 738 Query: 691 EQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVD 750 E ++ +A+G +DI+IGTH+LLQ+ V++KDLGL++VDEE RFGV HKE IK++R +VD Sbjct: 739 ESRAVIDGLADGSVDIVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVD 798 Query: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGG 810 +LT++ATPIPRTL M+++G+R++S I TPP R V T+V +D + A+ RE+LR G Sbjct: 799 VLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQIAAALRRELLRDG 858 Query: 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 870 Q +Y++N V +I AA R+ ELVPEAR+ + HGQM E LE + F ++ ++LVCTTI Sbjct: 859 QAFYVHNRVSSIDAAAARVRELVPEARVVVAHGQMPEDLLETTVQRFWNREHDILVCTTI 918 Query: 871 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRL 930 +ETG+DI ANT+I+ERAD FGL+QLHQLRGRVGRS + YA+ L P +T A RL Sbjct: 919 VETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPPQVPLTETAYDRL 978 Query: 931 EAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGR 990 IA +LGAG A+A DLEIRGAG +LG EQSG + +GF LY+ L+ A++ + Sbjct: 979 ATIAQNNELGAGMAVALKDLEIRGAGNVLGIEQSGHVAGVGFDLYVRLVGEALETYRDAY 1038 Query: 991 EPSLE------DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKV 1044 + + + ++L + + LP D+I RL Y+R+A+A ++ E+ + Sbjct: 1039 RAAADGQTVRTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEGYRRLAAASSDREVAAVVD 1098 Query: 1045 ELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLL 1104 EL DR+G LP+PAR L +ARLR + GI + + + + A + L Sbjct: 1099 ELTDRYGALPEPARRLAAVARLRLLCRGSGITDVTAAS-AATVRLSPLTLPDSAQV-RLK 1156 Query: 1105 QKQPQ 1109 + P Sbjct: 1157 RMYPG 1161 >UniRef50_C7RHN4 Transcription-repair coupling factor n=3 Tax=Anaerococcus RepID=C7RHN4_ANAPD Length = 1170 Score = 1064 bits (2753), Expect = 0.0, Method: Composition-based stats. Identities = 334/1146 (29%), Positives = 589/1146 (51%), Gaps = 25/1146 (2%) Query: 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75 L LT LV + E+ +V+IA + + A D I+ + + Sbjct: 26 PIYLSGLTDGFKPHLVLALFEKFKESLVIIAENEKRAEIYLDSINGIIENKAYLFPSLDI 85 Query: 76 LPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 Y+ S +S R+ L +L + ++I + + ++ + + +K Sbjct: 86 NFYNIKSIDNRKLSQRMEVLTKLAKGENFIVITTLKAMTNKLTTLDRFNKSFVKIKDEDI 145 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 + + L + Y V G++A RG+++D +P+ + P R++ FDDE+DS+R+F Sbjct: 146 IDVNNFIENLINLNYTANSLVENKGDFAKRGSIIDFWPVSYDNPVRIELFDDEVDSIRLF 205 Query: 196 DVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ-------- 247 D DSQRT+E++ + P E K + + + Sbjct: 206 DKDSQRTIEKISEAEISPVTELIYSKDDYDKVIKNINREIMSLDNDSKEINRQKLIDKYK 265 Query: 248 -----VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLAR 302 + + + I+ P + Y P + L+ D+ E + Sbjct: 266 QITAFIEESMFVSNIDLVNPY-RKDDYSSFLDYIPKSGLIFF-DDVARVIEDYDNFYENF 323 Query: 303 FENR--GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN--LGFQKL 358 FE+ ++ + + +D+++ ++ + + L + +K N + + + Sbjct: 324 FEDLSLQMENNEVFKSFEHARILIDDIYEQIDKFRIINLTSILKKSKLFNPRKIIEIKTI 383 Query: 359 PDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEA 418 + +D + + ++ + + + L + ++ + Sbjct: 384 ESENFNRRVDYFIDRTIELANSDKKVLILEGNEKTAFQLIDAYLEKDFTQVSKVGIGESF 443 Query: 419 SDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELH 478 + + G+ + + ++ G R++ S+ + +I N ++L Sbjct: 444 EKIPIQIANATSSSGYYIYDLDFYVFTHKEIYGSERKARKKKSKNKTSSRDII-NYSDLD 502 Query: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEE 538 IG VVH +G+G Y G+ +E I +++++ Y KL+VPV ++LIS+Y G E Sbjct: 503 IGDYVVHENNGIGIYKGLEKIEVNNIEKDFIVIEYRGTDKLFVPVDQMNLISKYIGSRGE 562 Query: 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFP 598 + L LG W +A+ +A + V ++A +L+++YA+R+ +G AF D F +SFP Sbjct: 563 SPKLSSLGTQTWQKAKARAKKAVDEIADDLVELYAKRSKIKGHAFSKDTTWQNEFENSFP 622 Query: 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 658 +E T Q ++I + +DM MDRL+CGDVGFGKTEVA+RAAF A+ + QVA LVPT Sbjct: 623 YEETYSQIRSIEEIKNDMESDKPMDRLLCGDVGFGKTEVAIRAAFKAIMDGYQVAFLVPT 682 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 T+LA QHY+ + RF +PV +++ISRF + I+ ++ GK+D++IGTH+LL DV Sbjct: 683 TILANQHYETIKRRFDKFPVNVQVISRFNPGSKNKLIIKDLKAGKVDLIIGTHRLLSKDV 742 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 +K+LGLLI+DEE RFGV+HKE++K +++++D+LTL+ATPIPRTL M++SG+RDLS + Sbjct: 743 GYKNLGLLIIDEEQRFGVKHKEKLKELKSSLDVLTLSATPIPRTLQMSLSGIRDLSTLDE 802 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 P R+ V T+V EYD+ ++++AI RE+ R GQVY++YN V +I+K L ELVP+A I Sbjct: 803 APEERMPVNTYVLEYDNGIIKQAIERELNRNGQVYFVYNRVNDIEKLYNHLIELVPDANI 862 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 AI HG++ +++E+ M +F ++L+ TTIIETG+DI NTIII +D GL QL+Q Sbjct: 863 AIIHGRISPKQIEKTMLEFIDGEIDILLSTTIIETGMDISNVNTIIIYDSDMMGLGQLYQ 922 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 L+GR+GR + +YA+ K ++ ++KRL++I D G+G+ +A DLE+RGAG L Sbjct: 923 LKGRIGRGNRSSYAYFTYRTGKILSEISEKRLKSIRDFSDFGSGYKIAMKDLELRGAGNL 982 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIP 1018 LGE QSG +E IG+ LY++ L+ AV+ +E +++++ +P+ +I Sbjct: 983 LGESQSGHVEAIGYDLYVKFLQEAVEKASGKE---VEIKDKSDVYIDIKVDGYIPNFYIE 1039 Query: 1019 DVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 D ++ Y RIA + + + +E+ +LID +G +P L+ I+ ++ A +L ++ Sbjct: 1040 DQAQKIEIYNRIARIQNQEDYDELVADLIDVYGDIPIMVDNLMYISLIKSMADELLFSEI 1099 Query: 1079 EGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQF 1138 I F K+ + L + Q + LD T F +S + ++ + Sbjct: 1100 REKSGNVNIYFENKDAFSFEELAEINQSFERDMSLDLSTNPAFKIPVS--RNKLLDTYEL 1157 Query: 1139 MRELEE 1144 ++ +E+ Sbjct: 1158 LKTIEK 1163 >UniRef50_D2BIN1 Transcription-repair coupling factor (Superfamily II helicase) n=5 Tax=Dehalococcoides RepID=D2BIN1_DEHSV Length = 1154 Score = 1064 bits (2751), Expect = 0.0, Method: Composition-based stats. Identities = 407/1154 (35%), Positives = 615/1154 (53%), Gaps = 42/1154 (3%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 P + GE + + A +A + R P+++I + A L ++I+ Sbjct: 20 PLFDSLFQALDRGEADI--SVLDAGRGFSLASVYRRLKCPMLVITSQPERARELLEQIAA 77 Query: 62 FTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLP-----TMQRGVLIVPVNTLMQR 116 +T + L D LPY ++ ++ L + + +++ V L+QR Sbjct: 78 YTGEEPGFLPDPSLLPYQRAVSDRNSSLEKMR-LAGILGGYIRSGDSRIIVTAVPALLQR 136 Query: 117 VCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176 + + G + L ++ GYR V G Y+ RG +LD+FP Sbjct: 137 YVSPEIFKQSFIQVWAGLEIEPQDLISRFQQLGYRQESIVEIPGTYSHRGGILDIFPHTE 196 Query: 177 ELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF-----PTDKAAIELFRSQW 231 + P RL+FF + ++SLR FD SQR+ + V + + PA E T K Sbjct: 197 DNPVRLEFFGNTLESLRNFDPKSQRSGKAVNELTISPASELFHLGQLTRKDINNRLDILL 256 Query: 232 RDTF--EVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG--D 287 D E R +++G P E++ PLF + Y P++ L+V Sbjct: 257 TDNLNPEFSRTLSADINHLNEGLKPEYPEFFAPLF---NTSSILDYLPSDALVVLDEPAS 313 Query: 288 LETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTK 347 +E +A + +R P + P+ + E+ + LK R+ + + ++ Sbjct: 314 IEQAAFHLDKEAEELRSDRLSHGELPSVYPRP-YFNWAEISAMLKTKKRLIMASFGRESE 372 Query: 348 AANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKI 407 + + + + L + L+ G VV + L ELL I Sbjct: 373 SLKLDF----ASPDNYVGRLSGLYEKLPE-LKGHTGRVVIVSH---QAARLAELLKERSI 424 Query: 408 -APQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTIN 466 A + L L+ G G+ + NL ++ +++L G RR R + Sbjct: 425 LAVVQTDVLTPPPPASLSLVQGILGSGWSLSD-NLHILTDAELFGFVKQRRLPSKRPSAR 483 Query: 467 PDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSL 526 ++ ++ G+ VVH++HGV ++G++ + G+ EYL+L YA KLYVP + Sbjct: 484 KGVVL----DIKPGEFVVHIDHGVALFSGVSHMNRDGMDKEYLILQYAGGDKLYVPTDQM 539 Query: 527 HLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 ++R+ G +E LH+LG W RA++KA+E + A ELLDIYA+R G+AF D Sbjct: 540 DRVNRFIGSGDEPPSLHRLGTQEWQRAKEKASESAEETARELLDIYAKRELANGYAFSAD 599 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 Q SFP+ TPDQ +A+ + DM + MDRL+ GDVG+GKTEVA+RAAF AV Sbjct: 600 TVWQQEMEASFPYVETPDQLKALCDIKEDMEKTRPMDRLILGDVGYGKTEVAIRAAFKAV 659 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 + KQVAVLVPTT+LAQQHY FR+R A +PV++E++SRFRS EQ +++ + +G++DI Sbjct: 660 MDGKQVAVLVPTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENMEKGEVDI 719 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 IGTH+LLQ+D+KFKDLGL+I+DEE RFGV HKE K +RA VD+LTL+ATPIPRTL+M+ Sbjct: 720 CIGTHRLLQADIKFKDLGLVIIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMS 779 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 M G+RD+S+I TPP RL +KT V +D ++REAILRE+ R GQV+++ N V I A Sbjct: 780 MVGVRDMSVIETPPGERLPIKTVVAAFDERLIREAILREMERNGQVFFVSNRVMGINLLA 839 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 ER+ +LVPEARI IGHGQM E +L VM DF +VLVCTTIIE+G+D+P ANT+II Sbjct: 840 ERIQKLVPEARIGIGHGQMAEDKLAAVMADFVRYELDVLVCTTIIESGVDVPNANTLIIN 899 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 RAD FGL QL+QLRGRVGRS AYA+ L K ++ DA+KRL+ I +LGAG+ +A Sbjct: 900 RADRFGLTQLYQLRGRVGRSSQLAYAYFLYDKEKHLSGDAEKRLKTIYEAAELGAGYGIA 959 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK----AGREPSLEDLTSQQT 1002 DLEIRGAG LLG +QSG + ++GF+LY ++L AV LK + + Sbjct: 960 MKDLEIRGAGTLLGVKQSGYINSVGFNLYTQMLSEAVAGLKAAGSGLSKEEIRIQNMPAP 1019 Query: 1003 EVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLD 1062 +++L + + +P+ +I D++ RLS Y+++++ + + E + EL DRFG++P LL Sbjct: 1020 KLDLPLDAFIPEYYIQDLDLRLSIYQQLSTLASLAGVLEKEKELTDRFGVMPKELENLLY 1079 Query: 1063 IARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFI 1122 RLR A+K + + V+ +N A L L + ++F Sbjct: 1080 SFRLRLLAKKAHVETIVTEGSQIVVRMLGGLIINKALLEPL---KAGVVAGRNQVAIQFR 1136 Query: 1123 QDLSERKTRIEWVR 1136 + K +E + Sbjct: 1137 KTGDSWKEVLEEII 1150 >UniRef50_C4LHL4 Transcription-repair coupling factor n=5 Tax=Bacteria RepID=C4LHL4_CORK4 Length = 1281 Score = 1063 bits (2749), Expect = 0.0, Method: Composition-based stats. Identities = 402/1200 (33%), Positives = 596/1200 (49%), Gaps = 78/1200 (6%) Query: 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADW 73 GE RL A + + IAE+ VV++ + A L E+ V W Sbjct: 63 GEPRLHISAIDEARSWVARAIAEKS--VVVIVTATSREAQDLTAELRDMMGDAVAMFPAW 120 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQR-------GVLIVPVNTLMQRVCPHSFLHGH 126 ETLP++ SP + + +RL L +L +++ P + +Q + Sbjct: 121 ETLPHERLSPGSETVGARLKVLRRLAHPHDIPGEQPIRIVVAPARSFIQPIM-KGLGERE 179 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 +++ + + T+L GY+HVD V + GE+A RG ++D+FP +ELP R + + Sbjct: 180 PIILA--EDTDVTGIATRLAEMGYQHVDLVGKRGEFAVRGGVVDIFPSTAELPVRAELWG 237 Query: 187 DEIDSLRVFDVDSQRTLEEVE--AINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHI 244 DEI LR F V QRT+E + A+ + P E D A R T Sbjct: 238 DEISDLRAFSVGDQRTIENFDPGAVPVYPCRELRIDDAVRARAEKMAR-THASNATLADA 296 Query: 245 YQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQ-------- 296 ++S+G G+E P+ F P+ L A V T L S E+ Q Sbjct: 297 LTKISEGVAVEGMESLIPVLFDGPMVTLPEEVAAADPSVTTTVLVMSPEKVQRRADDLIA 356 Query: 297 ---ADTLARFENRGVDPMRPLLP---------------PQSLWLRVDELFSELKNWPRVQ 338 A +E + P+ QS + + + ++ Sbjct: 357 TGKEFVKAGWEAAAMGAESPIDTAALAEAEDGNDDLNVDQSAYRSLGAMEKTAEHHGLSW 416 Query: 339 LK-----TEHLPTKAANANLGFQKLPDLAV-QAQQKAPLDALRKFLETFDGPVVFSVESE 392 ++ L F P + + L + G +VF+ + Sbjct: 417 WTCAPPGFLGSAEASSTLELDFSTGPQPKGKPGDVEKAMSELHDHV-AHGGRLVFTALTP 475 Query: 393 GRREALGELLARIKIAPQRIMRLDEAS-DRGRYLMIGAAEHGFVDTVRN----LALICES 447 + + I S ++ G V + L ++ E+ Sbjct: 476 ASAQRMSGRFREAGIGVTPDADPQNPSAPGKATVIRAVLHGGLVIPHVDDARPLLVVAET 535 Query: 448 DLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAG----G 503 D G R+ RR + L+ L+ G VVH HG+GR+ M G Sbjct: 536 DFTGNRIVAYGDGRRRPWRKRNRVDPLS-LNPGDLVVHETHGIGRFVKMQERTVGKGADA 594 Query: 504 ITGEYLMLTYAN------DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKA 557 EY++L YA LYVP+ SL L+SRY G EN L K+GG W ++KA Sbjct: 595 TRREYMVLEYAPSKRGGAADHLYVPMDSLDLLSRYVG--GENPSLSKMGGSDWKNTKKKA 652 Query: 558 AEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMC 617 VRD+AA+L+ +YA+R A G+AF D + D+FPF T DQ AI AV DM Sbjct: 653 RAAVRDIAADLVQLYAKRQAAPGYAFSPDTPWQREMEDNFPFTETEDQYNAIEAVKEDME 712 Query: 618 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 +P+ MDR++ GDVG+GKTEVA+RAAF AV + KQV +LVPTTLLAQQH+ F +R +P Sbjct: 713 KPVPMDRVIVGDVGYGKTEVAVRAAFKAVQDGKQVVLLVPTTLLAQQHFATFSERMEGFP 772 Query: 678 VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVR 737 + I +SRF + K+ ++L +AEG++DI+IGTH+LLQ+ V++K+LGL+IVDEE RFGV Sbjct: 773 ITIRQLSRFTTPKQAREVLTGLAEGQVDIVIGTHRLLQTGVQWKNLGLVIVDEEQRFGVE 832 Query: 738 HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV 797 HKE IKA+R++VD+LT++ATPIPRTL M+M+G+RD+S I TPP R V T+V + Sbjct: 833 HKEHIKALRSHVDMLTMSATPIPRTLEMSMAGIRDMSTILTPPEDRHPVLTYVGVQEDKQ 892 Query: 798 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 857 + AI RE+LR GQV+Y++N V +I++ A+ + ELVPEAR+ + HGQM E +LE + F Sbjct: 893 IAAAIRRELLRDGQVFYVHNRVRSIEQVAQHIRELVPEARVVVAHGQMNEDQLENTVEGF 952 Query: 858 HHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP 917 + ++VLVCTTI+ETG+DI ANT+I+E A H GLAQLHQLRGRVGRS + YA+ L P Sbjct: 953 WDREYDVLVCTTIVETGLDISNANTLIVENAHHMGLAQLHQLRGRVGRSRERGYAYFLYP 1012 Query: 918 HPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYME 977 + +T + RL IA DLGAG A+A DLE+RGAG +LG EQSG + +GF LY+ Sbjct: 1013 PSQTLTETSYDRLSTIAQNNDLGAGMAVAMKDLEMRGAGNVLGAEQSGHIAGVGFDLYVR 1072 Query: 978 LLENAVDALKA---GREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK 1034 L+ AV+A KA G+ D +++T +++ + + +P +I RL+ Y+ +A AK Sbjct: 1073 LVGEAVEAFKAMADGKPIDGSDKENKETRIDINVDAHIPTSYIASERLRLAAYRDLAQAK 1132 Query: 1035 TENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNE-KGGVIEFAEKN 1093 E L+ ++ EL+DR+G P LL +ARLR ++ G+ + I F+ Sbjct: 1133 NEEALQNVRAELVDRYGQPPQEIDRLLAVARLRMVCRECGVTDVVATGANKAAISFSPIE 1192 Query: 1094 HVNPAWL--------IGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEEN 1145 + + + + ++W M L Sbjct: 1193 LPDSGRVRLGRLYPGAQYRATTHNVVVPAPKKGRGIRAQAVKDEELLQWCADVMTSLLGK 1252 >UniRef50_A8RAG4 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RAG4_9FIRM Length = 1143 Score = 1060 bits (2742), Expect = 0.0, Method: Composition-based stats. Identities = 346/1141 (30%), Positives = 591/1141 (51%), Gaps = 35/1141 (3%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 LG L+ + A +VA ++ ++++ + A RL++ + + V+ E+L Sbjct: 24 LGNLSLSEEALIVASAFQKQPQTMLIVKNNTYTAQRLYERLYSLLGEKVLFFGVEESLRV 83 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 ++ + + ++++ L +L + ++++ + + H + +K + + Sbjct: 84 EAIAASPETKANQMEVLSKLFDNKPYIVVMNAAASIHYLPAPEVFQQHCISIKTNEETNY 143 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 + L+T L AGY HV +V + YA RG ++D++ M E P R++FFD+EIDS+R FD+ Sbjct: 144 EQLKTLLFEAGYTHVSRVDQPLCYAARGGIIDVYSMNYEYPLRIEFFDNEIDSIRFFDIS 203 Query: 199 SQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE------------VKRDPEHIYQ 246 +QRT+E ++ +++PA + I+ ++ Sbjct: 204 TQRTIEVIQEASIIPASDILFTNEEIQTITQLALAELANVKGFTNASKEHLEAIVNEDLD 263 Query: 247 QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENR 306 ++ + A + ++ + Y ++V++ + + + A+ + Sbjct: 264 AIANHSPEARLYKYRAFL--NQQATIMDYVKNACVIVSSEEEVKDSIKHAAEENIAYIQE 321 Query: 307 GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQ 366 LL + + ++ + +K + ++ + D+ ++ Sbjct: 322 MYQEANGLLK----FSMFADFSKAIQAHDVIYVKMFVDYKQPLSSQIMTMAQGDINLERT 377 Query: 367 QKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLM 426 + ++ V+ E + + ELL ++ QR+ D G ++ Sbjct: 378 MDQLIT------QSHSDKVLL-CLDESEIKRVRELLDEKNVSYQRVEETDTL-KNGISIL 429 Query: 427 IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 GF + + +L + + R + ++ + EL++G VVH Sbjct: 430 HHRLIEGFTCISEQIHVYTGKELFQSKHSISRYSN--KFKEAEVLHDYQELNVGDYVVHH 487 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLG 546 +HG+G+Y G+ E GI ++L + Y D L VP+ LI ++ L+KLG Sbjct: 488 QHGIGKYLGIVNKEIDGIHKDFLHIAYKGDDVLLVPLEQFQLIRKFVSKEGAVPKLNKLG 547 Query: 547 GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606 W + ++K +EK+ +A L+ +YA R GFAF D E + F F +E T DQA Sbjct: 548 SGEWEKTKRKVSEKIAQLAQRLVHLYASREEHIGFAFSKDSELQKQFEQDFDYELTHDQA 607 Query: 607 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 666 +A+ + DM MDRL+CGDVGFGKTEVA RAAF AV ++KQVA L PTT+L+ QHY Sbjct: 608 RAVKEIKQDMESSKPMDRLLCGDVGFGKTEVAARAAFKAVVDNKQVAFLCPTTILSLQHY 667 Query: 667 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 F RF N+PVRIE+I+RF +Q QI+ ++ G IDILIGTH+LL D++F+DLGLL Sbjct: 668 KTFTRRFENYPVRIEVINRFIPMAKQKQIMEDIKAGSIDILIGTHRLLSKDIQFQDLGLL 727 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 ++DEE RFGV HKE+IK + VD+L+L+ATPIPRTL M++ G+R LS + TPP R+ V Sbjct: 728 VIDEEQRFGVEHKEKIKEFKNTVDVLSLSATPIPRTLQMSLIGIRSLSQLNTPPQNRMPV 787 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 +T+V E + +++E I RE+ R GQV+YLYN+V+ I A +L E +P+ I + HGQM Sbjct: 788 QTYVIEKNFAMIKEIIQRELARNGQVFYLYNNVKEIYNVARKLREALPDVEIGVAHGQMS 847 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 ++E VM F + VLVCTTIIETGIDIP ANTI+I+ ADHFGLAQL+Q++GRVGRS Sbjct: 848 REDIEDVMLQFTENHYQVLVCTTIIETGIDIPNANTILIDEADHFGLAQLYQIKGRVGRS 907 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 AYA+L+ + ++ A KRL++I LG+G+ +A DL IRGAG++LG +Q+G Sbjct: 908 DRLAYAYLMYSPQRQLSEIAMKRLKSIKEFTQLGSGYKIAMRDLTIRGAGDMLGPQQAGF 967 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026 ++T+G +Y+E+L +A+ K ++ ++L +V+ + +P F + +++ Sbjct: 968 IDTVGIDMYIEMLNDAIMEEKGIKKEVKKELAKANVKVD----AYIPSRFANEDYEKITL 1023 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGV 1086 Y+R+ + T+ EL + E+ D +G LP + L + RL + + + + Sbjct: 1024 YQRMDAITTKKELLAMMDEIKDNYGRLPKAVQLLFEKKRLDICINEPHVETFKEMPREVE 1083 Query: 1087 IEFAE--KNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 I F N ++ L ++ + + + K + + K + V + + E+ Sbjct: 1084 IVFTPQWSNGIDGVKLFEMMTTISKDIVIRYKDQ-KIYMRMPKIKDWLYVVIEILERSEQ 1142 Query: 1145 N 1145 Sbjct: 1143 M 1143 >UniRef50_C8PBN6 Transcription-repair-coupling factor n=1 Tax=Lactobacillus iners DSM 13335 RepID=C8PBN6_9LACO Length = 1110 Score = 1060 bits (2742), Expect = 0.0, Method: Composition-based stats. Identities = 366/1148 (31%), Positives = 597/1148 (52%), Gaps = 61/1148 (5%) Query: 4 QYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEI-SQF 62 + V + +L + A ++ E+ R P++++A D A +++ + F Sbjct: 13 LVNFIKAVPQAKNSMLTGVNFGAFNLIIRELLHRLQQPILIVASDENRAQQIYSSLVELF 72 Query: 63 TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSF 122 + MV L + D +S RL + L T Q+G++I L + Sbjct: 73 EENMVHFFPVEPLLETQAAVSSLDELSQRLDAMSFLLTKQKGIVISTPQALQYPLPAAIK 132 Query: 123 LHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRL 182 ++L +K Q + + L GY+ D V GE+A RG +LD++P+ PYR+ Sbjct: 133 FKANSLTLKVNQVCNLSKICDFLVRCGYKRDDLVANPGEFALRGDILDIYPINIAYPYRI 192 Query: 183 DFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPE 242 +FFDDEID++R F+ SQRT + + + + PA + Sbjct: 193 EFFDDEIDNIRTFNSVSQRTKDSLTEVVIEPA-----------------------DDQLD 229 Query: 243 HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLAR 302 +YQ +E + Y + ++ D+ + Sbjct: 230 KLYQ-------------------NEDYTTILDYLTESGIICF-DDIRAIRQNIVQIDARN 269 Query: 303 FENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLA 362 + + + + + + + K + L + + L Sbjct: 270 RDYLAHETSTNIKNSRLDFTSIFNQIVQAKIYS--SLFQVSVNDLKIDQLLNLHTREPQQ 327 Query: 363 VQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG 422 +Q + L E V+ ++ R + + A I I ++ Sbjct: 328 FFSQMSLIKNEL-SVYELQQQTVIIQADNLVRAKQIKSTFADYGIDIT-IAAENKLIPNK 385 Query: 423 RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQP 482 R +++ GFV +L + E DL + + +++ IR+ EL+ G Sbjct: 386 RQIIVDNFNQGFVLPRISLVYLTEHDLFNRQPHIHK--KIKSLENAQQIRSYQELNPGDY 443 Query: 483 VVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPL 542 VVH+ HG+G + G+ TLE+ G G+Y+ +TY N +L+VP L ++ +Y + + Sbjct: 444 VVHINHGIGIFEGIKTLESNGQKGDYITITYRNHDQLFVPADQLGVVQKYVASDGKIPKI 503 Query: 543 HKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETT 602 +KLGG+ W++ + + EK+ D+A ELL IYA RA ++GFAF D E + F +FP+ T Sbjct: 504 NKLGGNEWAKTKCRVQEKIEDIADELLAIYAHRATEKGFAFLPDDELQRDFEAAFPYLET 563 Query: 603 PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLA 662 PDQ +AI + DM + MDRL+ GDVGFGKTEVA+RAAF A+D+ KQVA LVPTT+LA Sbjct: 564 PDQIKAIREIKLDMQKEKPMDRLLVGDVGFGKTEVALRAAFKAIDSGKQVAFLVPTTILA 623 Query: 663 QQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKD 722 +QHY +RF ++PV + M+ RF++ KE +I ++ GKIDI++GTH++L D+KFK+ Sbjct: 624 EQHYATMLERFKDFPVNVAMLCRFQTEKEADEIATNLSNGKIDIVVGTHRILSRDIKFKN 683 Query: 723 LGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR 782 LGLLI+DEE RFGV+HKE++K ++ N+D+LTLTATPIPRTL+M+M G+RDLS++ TPPA Sbjct: 684 LGLLIIDEEQRFGVKHKEKLKKLKNNIDVLTLTATPIPRTLHMSMIGVRDLSVMETPPAN 743 Query: 783 RLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGH 842 R ++T+V E +VREA LRE+ R GQ+++L+N +++I + L++L+PEARI H Sbjct: 744 RYPIQTYVTEETPNIVREACLRELARNGQIFFLHNKIQDIDQKVAYLSQLIPEARIEYIH 803 Query: 843 GQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGR 902 G+M ER+LE +M F ++F++LV TTIIETG+D+P NT+++E AD +GL+QL+QLRGR Sbjct: 804 GRMSERQLEDIMLRFTQKKFDILVTTTIIETGVDLPNVNTLLVENADTYGLSQLYQLRGR 863 Query: 903 VGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEE 962 +GRS AYA+ L K +T ++KRL AI LG+GF +A DL IRGAG +LG++ Sbjct: 864 IGRSSRLAYAYFLYKRDKVLTEVSEKRLNAIRDFTALGSGFKIAMRDLSIRGAGNILGKQ 923 Query: 963 QSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNT 1022 Q G ++++G+ LY ++L+ + + + EV + + + +P ++I Sbjct: 924 QHGFIDSVGYDLYAQMLDQTIKQKRGDK-----VCHKTNAEVRINLEAYIPTEYISSQKQ 978 Query: 1023 RLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNE 1082 ++ FYK+I A +++I ELIDRFG P LL+IA ++ A I + + Sbjct: 979 KIEFYKKIKHANDVKAIDDIADELIDRFGTYPKSVENLLNIATIKVLADTAQILSITNID 1038 Query: 1083 KGGVIEFAEKNH--VNPAWLIGLLQKQPQHYRLDGP-TRLKFIQDLSERKTR---IEWVR 1136 K I +K + + L+ R+ RL L + + ++ Sbjct: 1039 KKIDIVLDQKASEELKGPNIFRTLEHVCFRARVSVDHDRLHVRLILDSKSSWRTIFNELK 1098 Query: 1137 QFMRELEE 1144 F++ + + Sbjct: 1099 VFLQAVID 1106 >UniRef50_D1VSM6 Transcription-repair coupling factor n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSM6_9FIRM Length = 1157 Score = 1059 bits (2740), Expect = 0.0, Method: Composition-based stats. Identities = 350/1150 (30%), Positives = 603/1150 (52%), Gaps = 31/1150 (2%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLA 71 + + T C + + +++IA + +A + ++++ + V+ Sbjct: 23 DSKSPIAVYGTTEGFCGIFSYALFRKLNKKLLIIAENRLSARKYYEDLFNISPLRVLLYP 82 Query: 72 DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 + + YD S +D + +RL T+ ++ T +++ + L ++ + L ++ Sbjct: 83 EKDIFLYDRDSKSRDNLKTRLGTISKILTDDWDIIVTTLRALGDKISARDVFLKNTLTLE 142 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 K + + +L +L GY QV G+++ RG ++D+ YR++ FD EIDS Sbjct: 143 KSKDIDIKSLNAKLLQMGYERYPQVEGMGQFSIRGNIIDI--ATFSDNYRIELFDTEIDS 200 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE----VKRDPEHIYQ- 246 +R F+++SQR+++ ++++ + P + + + + + +++ Sbjct: 201 IRTFELESQRSIDFIDSVKIFPTLDILISEDDRLNAAKKIENEINKTKLSGERKDRLFEK 260 Query: 247 ------QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL-LVNTGDLETSAERFQADT 299 ++ + + P + L + + +T+ ++N E Sbjct: 261 FSLYKNRLVEDEYIQNPDLIIPFLNEDKLSGIIDFIGEDTISILNEPKQILEREETLELE 320 Query: 300 LARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHL--PTKAANANLGFQK 357 + + L ++++ + +L+ + L A + F+ Sbjct: 321 NSETITEMITFGEALPSHKNIYYPYLNIIDKLRKRNLLTLNALLTSPKEFRPKAIVNFKM 380 Query: 358 LPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE 417 +++ K + L +L + V+ S R + L L + + + Sbjct: 381 KSITNYRSKIKLFREDLDYYL-SNGYKVILLGGSLKRAKRLHNFLLEFNLNVEFKEDRNT 439 Query: 418 ASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAEL 477 + G+ G + + +I +++ G ++ ++ I N +L Sbjct: 440 EFANNFVVTTGSVNAGCEFALSKIVIINYAEIYG-----TYKEKKKPKRKKEKILNFEDL 494 Query: 478 HIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAE 537 H+G VVH HG+G+Y G LE GI +Y+++ Y D KL++P+ SL LI +Y G + Sbjct: 495 HVGDYVVHESHGIGKYIGTEQLEVSGIKRDYVVIKYFGDDKLFLPIESLDLIYKYTGDEK 554 Query: 538 ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSF 597 + L+KL W++ ++KA + + D+A +L+ +YA R +K GF F D + F D+F Sbjct: 555 KAPKLNKLNSIEWNKTKRKAKKSIDDMADDLIKLYAARESKNGFKFSKDSSFQREFEDAF 614 Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 +E T Q + + DM + MDRL+C DVG+GKTEVA+RAAF A+ + KQVA LVP Sbjct: 615 IYEETDGQLLSSEEIKKDMEEAHPMDRLLCADVGYGKTEVALRAAFKAILDGKQVAFLVP 674 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 TT+LAQQHY+ +RF ++PV + ++SRFR+ KEQ + + ++ G +DI++GTH+LL D Sbjct: 675 TTILAQQHYNIMVERFKDFPVEVGILSRFRTKKEQKETIEKLKAGIVDIVVGTHRLLSKD 734 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 V FKDLGLLI+DEE RFGVRHKE++K ++ N+D LTL+ATPIPRTL M+M G+RD+S+I Sbjct: 735 VVFKDLGLLIIDEEQRFGVRHKEKLKMLKENIDTLTLSATPIPRTLQMSMIGIRDMSVIE 794 Query: 778 TPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEAR 837 PP R VKT+V EY+ ++VREAILRE+ RGGQVY++YN V N++ + L ELVPE Sbjct: 795 EPPEERFPVKTYVLEYNPLMVREAILREVERGGQVYFVYNRVANMEYKLQELRELVPEVS 854 Query: 838 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 897 + +GQM E++LE M F +VL+C+TIIETG+D+ ANT+II ++ GL+QL+ Sbjct: 855 FVMANGQMNEKDLEDTMLSFLRGDVDVLLCSTIIETGMDVQNANTMIITDSNRLGLSQLY 914 Query: 898 QLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGE 957 QLRGR+GRS AYA+ +++ AQKRL+ I + G+GF +A DLEIRG+G Sbjct: 915 QLRGRIGRSSRVAYAYFTYEKDVSISEIAQKRLKTIKEFTEFGSGFKIALRDLEIRGSGS 974 Query: 958 LLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFI 1017 +LG +Q G ++ IG+ LYM+ L AV+ LK +E + +T ++L++ S +P +I Sbjct: 975 ILGSKQHGHIDNIGYDLYMKYLTQAVNKLKG-----IETRETIETVIDLKIDSYIPKTYI 1029 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 D RL YK+I+ ++E E ++ ELIDRF LP L+DI+ LR +A K+ + Sbjct: 1030 EDERLRLEIYKKISVLESEKEYSDLIDELIDRFSDLPKEVVNLMDISLLRYKASKINVIS 1089 Query: 1078 LEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLD-GPTRLKFIQDLSERKTRIEWVR 1136 + + I+ E+ +N LI + + ++ D ++ L ++ Sbjct: 1090 IIEKDGKYTIKLNEEIGLN---LIKEMGENFKYISYDLSEHSEIILEKLKYPMEDLKKAL 1146 Query: 1137 QFMRELEENA 1146 + + + Sbjct: 1147 VIISSQKNHN 1156 >UniRef50_Q04H97 Transcription-repair coupling factor (Superfamily II helicase) n=9 Tax=Lactobacillales RepID=Q04H97_OENOB Length = 1188 Score = 1059 bits (2739), Expect = 0.0, Method: Composition-based stats. Identities = 376/1168 (32%), Positives = 620/1168 (53%), Gaps = 45/1168 (3%) Query: 8 TLPVKAGEQRLLGELTGAACATLVAEIA-----ERHAGPVVLIAPDMQNALRLHDEISQF 62 + +L+ + A L A + E+++ ++L+ A +L ++ Sbjct: 20 SNQADQTSTQLISGVNDTPKAALAAGVFVRLKAEKNSKKILLLTDTQFRADQLTSDLEAL 79 Query: 63 T-DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 D+ V + E+L ++ +D SR+ L L + + +++VP++ L +R Sbjct: 80 LEDENVFEMQSEESLATETAVASRDADLSRVLALRALLSKENSIVVVPLSGLSRRYPDPE 139 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 F L K ++ L +L GY V GE++ RG ++D++P+ + P R Sbjct: 140 FFQQAVLDFKIANSYPQEQLAKKLIEMGYNKQTLVANPGEFSVRGEIVDIYPINFDEPIR 199 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF------ 235 LDFFDDE++S+R FD DSQ++L +++ ++ P +F +A Q F Sbjct: 200 LDFFDDELESMRTFDADSQKSLNKIKQASVSPVSDFLLPRAEFSDGLKQLEQAFVDYLNK 259 Query: 236 ----EVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF-PANTLLVNTGDLET 290 E K+ E + + P +F Y + +L++ Sbjct: 260 LKGAEKKKLTEFFNPLLEAAKHFSYGHELLPFSEFFLKHSIFEYLQSEDLILIDDFARIN 319 Query: 291 SAERFQADTLARFENRGVDPMRPLLPP-----------QSLWLRVDELFSELKNWPRVQL 339 Q A + + + L +S ++ + + Sbjct: 320 DQTNIQEKKNAEWITDRLREFKLLPDLKVKIDGINLIKKSQQKLSKKIQKFVNPKIYLSN 379 Query: 340 KTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALG 399 T L + Q A L + + D V+ + R +L Sbjct: 380 LTRGLAGITFTSRTQLITRQMQQYFGQMPALKLDLESYRKR-DFTVLLQASNRERLLSLQ 438 Query: 400 ELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQ 459 L + D+ L IG+ HGF + ++ E++L + ++R Sbjct: 439 RTLHDFGMN---FAITDDILTGTAQLQIGSLSHGFELPEEKIVVMTETELFAK--VKKRV 493 Query: 460 DSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKL 519 +T + I + EL G VVH+ HG+GRY G+TTLEA G +Y+ + YA AK+ Sbjct: 494 PRHQTFSNAEKITSYTELKTGDYVVHVNHGIGRYEGLTTLEANGGKQDYITIAYAQKAKI 553 Query: 520 YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 +VPV+ L+L+ +Y G A+ ++ L W++ +++ KV D+A EL+ +Y++R + Sbjct: 554 FVPVTHLNLVQKYIGAADGRPKVNSLNSTDWAKTKRRVTAKVEDIADELIALYSKREGEV 613 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 G+AF D ++ Q F D F + T DQ ++I + SDM MDRL+ GDVGFGKTEVA Sbjct: 614 GYAFSVDDQRQQEFDDGFAYPETVDQLRSIKEIKSDMENKKPMDRLLVGDVGFGKTEVAF 673 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAE 698 RAAF A+++HKQVA L PTT+L+QQHY +RF+++P ++I M+SRF +A + +++ + Sbjct: 674 RAAFKAIEDHKQVAFLTPTTILSQQHYQTAIERFSDFPEIKIAMLSRFNTAGQNKEVIKK 733 Query: 699 VAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATP 758 + ++D++IGTH+LL DV F DLGLLI+DEE RFGV+HKE+IK +RANVD+LTLTATP Sbjct: 734 LKAHQLDMVIGTHRLLSKDVAFDDLGLLIIDEEQRFGVKHKEKIKQLRANVDVLTLTATP 793 Query: 759 IPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYND 818 IPRTLNMA+ G RDLS++ TPPA R ++T+V E + V+ +AI +E+ RGGQ ++L+N Sbjct: 794 IPRTLNMALVGARDLSVLETPPANRFPIQTYVLEENWPVIADAIEKELSRGGQTFFLHNR 853 Query: 819 VENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 V++I++ + +VP+A + HG+M E +LE V+ DF + ++VLV TTIIETG+DIP Sbjct: 854 VQDIERTVGEIQRIVPDANVGYIHGRMNETQLEDVLMDFLNGIYDVLVTTTIIETGVDIP 913 Query: 879 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLED 938 ANT+I+E ++ FGL+QL+QLRGR+GRS+ AYA+ P + T DAQKRLEAI + Sbjct: 914 NANTLIVENSERFGLSQLYQLRGRIGRSNRLAYAYFTYPGDRQPTEDAQKRLEAIRDFTE 973 Query: 939 LGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLT 998 LG+GF LA DL IRGAG+LLG++Q G ++++G+ LY ++L+ AV + + ++ Sbjct: 974 LGSGFKLAMRDLSIRGAGDLLGKQQHGFIDSVGYELYQQMLQEAVSQKQGKDKKVMQT-- 1031 Query: 999 SQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPAR 1058 E+ L + +LLPD ++ D + ++ Y+RI ++T+ + E++ +LIDRFG +P+ Sbjct: 1032 --NAEIVLNIEALLPDSYVNDSSQKVELYQRIRKSRTDEQFNEVRQDLIDRFGPIPEVVD 1089 Query: 1059 TLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH--VNPAWLIGLLQKQPQHYRLDGP 1116 L +A L+ + L G++ I F+ + + + L+ P R+ Sbjct: 1090 NLFALAHLKNATDAANVINLHGDDSQIRIIFSRRVSQILAGETIFKTLKGLPYKVRVKAV 1149 Query: 1117 T----RLKFIQDLSERKTRIEWVRQFMR 1140 +L I + E+ I+ + +++ Sbjct: 1150 DDQKLQLTVILNEDEKLVYIDKITKYLE 1177 >UniRef50_A9G788 Transcription-repair coupling factor n=3 Tax=Proteobacteria RepID=A9G788_SORC5 Length = 1271 Score = 1057 bits (2734), Expect = 0.0, Method: Composition-based stats. Identities = 424/1187 (35%), Positives = 652/1187 (54%), Gaps = 69/1187 (5%) Query: 17 RLLGELTGAACATLVAEI-AERHAGPVVLIAPDMQNALRLHDEISQFT------------ 63 R + G+A A ++ + A ++ + PD+ +A L + S Sbjct: 86 RHVTGSAGSAGALVIRRLVAAVAGRRLIALTPDVDSARALAADTSFLLVDRDADDAEAAG 145 Query: 64 ----DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQR-GVLIVPVNTLMQRVC 118 ++++ L + E PY +P + +RL+TL+ L VL+ P+ L+++V Sbjct: 146 STTFGRVLLYLPN-EASPYADVNPDRRGAQTRLATLFHLGMDLPWSVLVCPITALIRKVV 204 Query: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL 178 + HA ++ Q + RDAL +L ++GY V + G +A RGALLD++ +EL Sbjct: 205 SRDEITEHAELVIAEQEMDRDALSARLGASGYVRSPLVEDPGTFAVRGALLDVWAPSAEL 264 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK 238 P R+DF+ D + S++ F+ D QRT+ +V+ + + PA E A +E R + R +V Sbjct: 265 PVRIDFYGDIVASIKTFNPDDQRTVADVKEVWIPPAREAILTPANVERARQRVRAACDVI 324 Query: 239 R----DPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAER 294 + V+ G G E + P F L SY P + L++ +A Sbjct: 325 DFPSTKARALVDDVASGRAFFGAEGYLPAFID--LASFTSYLPDDALILLEDPSSVTA-A 381 Query: 295 FQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN-- 352 + + +R P P S + + S L + L + A N N Sbjct: 382 VRNELGRAGADRSHKDREPHFPLASFYEDEAHVASWLGARAVLALHRTGVEGAAENRNSL 441 Query: 353 ----LGFQKLPDLAVQAQQKAP---------------LDALRKFL---ETFDGPVVFSVE 390 + + +P LA + Q LD L + + + V+ + Sbjct: 442 ERFEVVPEDVPSLATRDQSDLERAIKTARASRGKHGALDPLVRRVVAWQEAGLRVLIAAR 501 Query: 391 SEGRREALGELLARIKI----------APQRIMRLDEASDRGRYLMIGAAEHGFVDTVRN 440 ++ + E L LL + + ++ G+ G + Sbjct: 502 AQTQVERLVALLRHRDVRVKANLGPFDPAFFDGSSSASPRDTALVVTGSLARGVIAPAEG 561 Query: 441 LALICESDLLGERVARRRQDSRRTINP--DTLIRNLAELHIGQPVVHLEHGVGRYAGMTT 498 LAL+ E ++ G R RR + + + +L L +G VVH+EHG+GRY G+ Sbjct: 562 LALVTEEEIFGARAHRRAARAAASSTKPSQAFLEDLRNLGVGDHVVHVEHGIGRYLGLVH 621 Query: 499 LEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAA 558 + G T + + + YA KLY+PV L+ I +++GG L +LGG +++ + + Sbjct: 622 KQVGSTTVDLIAVEYAGGDKLYLPVYRLNQIQKFSGGEG-TPKLDRLGGQTFAKTKARVE 680 Query: 559 EKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQ 618 + VR +A ELL +YA+R A + Y+ F +FPF+ TPDQA+AI V +D+ Sbjct: 681 KSVRKMADELLRLYAERRAATAEPVPPPDDDYRAFEATFPFDETPDQARAITEVTADLES 740 Query: 619 PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPV 678 MDRLVCGDVGFGKTEVA+RAAF A + +QVAVL PTT+LAQQHY +FR R A++P+ Sbjct: 741 GRPMDRLVCGDVGFGKTEVAIRAAFRAANAGRQVAVLCPTTVLAQQHYLSFRSRMASYPI 800 Query: 679 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH 738 + ++SRF+S +EQ ++ + +G +D++IGTH+LL DV FK LGLL+VDEE RFGV H Sbjct: 801 EVRVMSRFQSKQEQDEVSRGLRDGSVDVVIGTHRLLSKDVHFKRLGLLVVDEEQRFGVTH 860 Query: 739 KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVV 798 KERIKA++ NVD+LTL+ATPIPRTL MA+SG+RD+SII TPP R A++T V +D V+ Sbjct: 861 KERIKALKTNVDVLTLSATPIPRTLQMAVSGLRDMSIITTPPVDRRAIRTVVTRHDEAVL 920 Query: 799 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 858 REA+LRE+ RGGQV+Y+YN VE + + A RLAELVP ARI + HGQM E+ LE+ M DF Sbjct: 921 REAVLRELGRGGQVFYVYNRVEGLYERAARLAELVPSARICVAHGQMSEQSLEQAMLDFV 980 Query: 859 HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 R++VL T IIE+G+DIP ANTI+I+RAD FGL+QL+QLRGRVGRS +AY +L+ P Sbjct: 981 EGRYDVLCATAIIESGLDIPRANTILIDRADMFGLSQLYQLRGRVGRSKERAYCYLIVPP 1040 Query: 919 PKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMEL 978 P AMT +A+ R+EA+ +LG+GF +A+ DLE+RG+G+LLG EQSG++ +GF L+ ++ Sbjct: 1041 PNAMTDEARARIEALERHTELGSGFQIASLDLELRGSGDLLGAEQSGTVAQVGFELFCQM 1100 Query: 979 LENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENE 1038 L+ AV L+ + TE+ +LLP+++I DV RLS YKR+A A + + Sbjct: 1101 LDEAVHELRGE-----PVVHDVDTELSFDADALLPEEYISDVGVRLSLYKRLAGAASTED 1155 Query: 1039 LEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPA 1098 ++++ VE+ DRFG P AR + + RL+ + ++L E + KG + E ++ A Sbjct: 1156 VQDLAVEMEDRFGPPPLEARRFVHLMRLKTELRRLKALACEASAKGVTLHLREDTPLDHA 1215 Query: 1099 WLIGLLQKQPQHYRLDGPTRL-KFIQDLSERKTRIEWVRQFMRELEE 1144 ++ L+Q + YRL RL + ++ + +E + + EL Sbjct: 1216 KVLKLVQPKASPYRLSPDMRLTRRAKEGEAFTSGLEATDKLLSELAG 1262 >UniRef50_A5EV48 Transcription-repair coupling factor n=2 Tax=Cardiobacteriaceae RepID=A5EV48_DICNV Length = 1117 Score = 1056 bits (2730), Expect = 0.0, Method: Composition-based stats. Identities = 469/1122 (41%), Positives = 675/1122 (60%), Gaps = 36/1122 (3%) Query: 29 TLVAEIAERH--AGPVVLIAPDMQNALRLHDEISQFTDQMV-----MNLADWETLPYDSF 81 L +A +++APD A L+D + + +DWETLPYD + Sbjct: 15 HLAYNLAHHLLPKHVHLIVAPDAVWAQYLYDNLMFWLKNSAWQQTLYYFSDWETLPYDHY 74 Query: 82 SPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDAL 141 +PH D++S R+ L +LPT+ +G++I + QR+CP + L + G +++ + Sbjct: 75 TPHPDLVSERIRVLAELPTLTQGIVITSTSAFRQRLCPQTHLDKFGIHCAVGDHIAQKTV 134 Query: 142 RTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR 201 +L AGY+ + E GEYATRG ++DLFPM ++ P RL++ DDEIDS+R FD+ +Q Sbjct: 135 INRLLQAGYQSTHFISEKGEYATRGNIVDLFPMAAQTPIRLEWLDDEIDSIRFFDLKTQL 194 Query: 202 TLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQ 261 TL++ + +++LPA E A FR R F IYQ +S+G P G+EY+ Sbjct: 195 TLKKCQQLSILPARELDLSDAGRVCFRQSARQYFGEHIHQSGIYQSLSEGRTPQGLEYYL 254 Query: 262 PLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLW 321 PLFF E L YFP+NT + +L S + R++ LL P+ LW Sbjct: 255 PLFFDE-TAHLLDYFPSNTCYIPADELAVSLQNHDDYCHKRYQRLNHLRENSLLAPEQLW 313 Query: 322 LRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETF 381 EL L P ++ + L + L +F Sbjct: 314 FSPQELQERLATLP---------------THMPKNRCTALPFSDETPRGQQWLEQFATA- 357 Query: 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNL 441 V S+G RE + L + PQ ++ + L I ++ F + Sbjct: 358 -ERAVLHFSSQGLREYWFDRL--YQEYPQCLISDELPPKNYPALCISPLQYSF--CADGI 412 Query: 442 ALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEA 501 + E+D G + + +I++L +L +G PVVH++HGVGRY G+ ++ Sbjct: 413 THLAETDRHGSHTTPN-YRQNKHKDAGAIIQSLQDLTLGAPVVHIDHGVGRYRGLEMIDD 471 Query: 502 GGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKV 561 E L++ YA A+L+V +S L LIS+Y+G A ENAPLH+LGG W A++KA + Sbjct: 472 D----EMLVIEYAKGARLFVAISDLDLISKYSGTASENAPLHELGGKVWQNAKKKAQQTA 527 Query: 562 RDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621 RD AAELL IYA R A A D F F +ETTPDQ AI+AVL+D+ Q Sbjct: 528 RDTAAELLAIYAAREAASAQALTFDPHMLADFAQQFEYETTPDQQAAIDAVLNDLQQAKP 587 Query: 622 MDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIE 681 MDR+VCGDVGFGKTEVAMRAA+ AV Q A++ PTTLLA QH NF DRF++ VRI Sbjct: 588 MDRIVCGDVGFGKTEVAMRAAYAAVLAGYQCAIITPTTLLADQHVHNFLDRFSHIAVRIA 647 Query: 682 MISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKER 741 ISRF++ EQ I+ + +G IDI+IGTH+LLQ D+ F LGL+IVDEEHRFGV+HKE Sbjct: 648 AISRFKTPAEQRAIVQSLRDGTIDIVIGTHRLLQKDIAFARLGLVIVDEEHRFGVKHKEA 707 Query: 742 IKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREA 801 +K++RA+V++LTLTATPIPRTLN+A+SG+RDLSIIAT PA R +++T + +YD +V+ EA Sbjct: 708 LKSLRADVNLLTLTATPIPRTLNLALSGLRDLSIIATAPAGRQSIQTIISQYDPIVIEEA 767 Query: 802 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR 861 RE+ RGGQ+Y+L+NDV +I + A L+E +P+ARIA+ HGQ+RER LE++M DF+++ Sbjct: 768 CERELNRGGQIYFLHNDVSSIDRIARALSEQLPQARIAVAHGQLRERALEKIMQDFYNRH 827 Query: 862 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA 921 +++LV +TIIE+GIDIP ANTIII RAD GLAQLHQLRGRVGRSHHQAYA+L+TP + Sbjct: 828 YDLLVASTIIESGIDIPNANTIIINRADKLGLAQLHQLRGRVGRSHHQAYAYLITPAWQT 887 Query: 922 MTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLEN 981 + DAQ+RL A L+ LGAGF LA+ DLEIRGAGE+LG+EQSG ++ IG S Y++LLE Sbjct: 888 LNKDAQRRLSAFTELDSLGAGFLLASQDLEIRGAGEILGDEQSGQIQQIGMSYYLDLLER 947 Query: 982 AVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEE 1041 A ALK+G++ + E++ + ++++ +LLPD ++ D RL+ Y R+A AK+ E+++ Sbjct: 948 ATAALKSGQDFNQEEIA-VRYQIDIGEAALLPDTYVFDPQIRLTLYHRLARAKSIAEIDD 1006 Query: 1042 IKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLI 1101 + +EL DRFG LP A+ L ARL AQ +GI K+ K ++F ++ LI Sbjct: 1007 VMIELSDRFGSLPVLAQNLCHKARLHVYAQLIGIEKIRLQTKTIELQFLPTATIDANKLI 1066 Query: 1102 GLLQKQPQHYRLDGPTRLKFIQDL-SERKTRIEWVRQFMREL 1142 LQ+ PQ Y++ PT ++ + + S + +++ + E+ Sbjct: 1067 EKLQRDPQCYKMTAPTSVRILLEEASTFAEKRVHLQKLLTEI 1108 >UniRef50_B0VGK6 Putative transcription-repair coupling factor n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGK6_9BACT Length = 1127 Score = 1051 bits (2717), Expect = 0.0, Method: Composition-based stats. Identities = 393/1151 (34%), Positives = 605/1151 (52%), Gaps = 49/1151 (4%) Query: 3 EQYRYTLPVKAGEQRL-LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 + + L + ++ + + L +A A L + + ++L++ D A + D++ Sbjct: 14 KFMQRVLKLPLKDRSIQIYHLNQSARALLAVHLWKHTGKNIILVSQDDIIAEDIWDDLCV 73 Query: 62 FTD-QMVMNLADWETLPYDSFSPHQDIISSRLST-LYQLPTMQRGVLIVPVNTLMQRVCP 119 + L D+E LPY+ SPH I ++R+ T L L + + + L + + Sbjct: 74 LIGKENAHYLPDYEILPYEERSPHYSIRATRMETFLATLNNDKSAIYSLSARALGRYLPA 133 Query: 120 HSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELP 179 FL H L +K+G D L L GY QV + + A RG ++D+F P Sbjct: 134 QKFLSRHILHLKQGMECEPDTLLHNLYDMGYEIQYQVSKVFQAAKRGGIIDIFSPPLTNP 193 Query: 180 YRLDFFDDEIDSLRVFDVDSQRTLEE-VEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK 238 RL+F+ DEI +RVF V +QR+LE+ + + +LPA E Sbjct: 194 VRLEFWGDEIIGMRVFSVTTQRSLEQYLTELTILPARELSLSD----------------V 237 Query: 239 RDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV---NTGDLETSAERF 295 I ++ GIE + L +E L YF + ++ N L+ E Sbjct: 238 DSGSPIIAKIRNQGFFEGIENYYALLCNE-LQTFADYFEKDNRILVWNNFYYLQEEYETL 296 Query: 296 QADTLARFENRGVDPMRPLLP-PQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLG 354 L ++ + +P P+ ++ D L + ++ L N+ Sbjct: 297 FEQALTTWQKEAKIQGQGRVPRPEQMFADWDVLTELKEKSEKLYLSQSEFELSFPTLNMR 356 Query: 355 FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMR 414 ++ + L + + +++ + + + Sbjct: 357 APFASQPNFESDLGLLAETLFSRNKE-GWQNILLFDNQSQAKRMQ--------------- 400 Query: 415 LDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNL 474 G GF +L L + ++ +RR P I N Sbjct: 401 -QSIGKIPFTEFFGVLHEGFSLEDCHLNLWTDHEIFNRYKSRRYTPR---YAPGETIVNY 456 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG 534 +L G VVH++HG+G + G+ + G E L+L YAND ++YVP L L+++Y Sbjct: 457 EDLKPGDYVVHIDHGIGVFEGLKIIRLDGSDVECLVLRYANDDRVYVPTYQLSLVTKYVA 516 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 L+KLG W+ ++KAA+++ +AA+++ +YA+R+++ G A + D E + Sbjct: 517 EESTKPVLNKLGSSKWNNTKRKAAQQIELIAADIVKLYAERSSRLGIAHQPDTEWQKELE 576 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 DSF +E TPDQ++A + DM P M+RL+CGDVGFGKTEVA+RAAF AV + QVAV Sbjct: 577 DSFIYEDTPDQSKATKEIKEDMELPAPMERLLCGDVGFGKTEVAIRAAFKAVCSGYQVAV 636 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 L PTTLL +QHY FR+R A +PV+I M SRFR + L + G IDI IGTH+LL Sbjct: 637 LAPTTLLVEQHYRVFRERLAQYPVKIVMFSRFRKNTAMKKDLLGLKSGSIDIAIGTHRLL 696 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 DV+FK LGLLI+DEEHRFGVRHKE+++A+++NVD L ++ATPIPRTLNMA+S ++++S Sbjct: 697 SKDVQFKKLGLLIIDEEHRFGVRHKEKLRALQSNVDTLYMSATPIPRTLNMALSKLKEIS 756 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 ++ T P RL V+T + D V+++AI REI RGGQV++++N V+ I+ A L +P Sbjct: 757 LMQTSPKERLPVRTIITPRDMEVIKDAIRREIDRGGQVFFIHNRVQTIETVATELRNAMP 816 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 + R +GH QM E++LERVM DF + + VL+ TTIIE GIDIP ANTI+I+ A+ FGLA Sbjct: 817 KVRFIVGHAQMPEQQLERVMADFWAKEYQVLISTTIIENGIDIPNANTILIDNAETFGLA 876 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QL+Q+RGRVGRS+ +AYA+LL K TT A+KRLEA+ + LGAGF +A DLE+RG Sbjct: 877 QLYQMRGRVGRSNRRAYAYLLIS--KGTTTVARKRLEALTQYDYLGAGFQVALRDLELRG 934 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQT--EVELRMPSLL 1012 AG +LG +QSG ++ IGF+ Y +L NA+ A++ G L + S T +V + Sbjct: 935 AGTILGTKQSGIIQAIGFNYYNRILANAIQAVEKGETIKLFNDESPDTRRKVRTEIDLYF 994 Query: 1013 PDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 P D+I D RL YKR++ +T ++ ++VEL+DRFG LP+ A LL+ +L Q A+K Sbjct: 995 PPDYIDDDEERLRIYKRLSELETLEDINNLEVELLDRFGPLPEQASWLLNYFQLSQLAKK 1054 Query: 1073 LGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRI 1132 L ++ + ++EF K + L+ K Q R + LK I DL + + Sbjct: 1055 LSLKDCQVKHDSFIMEFDAKKLPSQEQLLHFTTKIKQPLRFEAGKNLKVIIDLDPEASYL 1114 Query: 1133 EWVRQFMRELE 1143 + + L+ Sbjct: 1115 QQFETAIEILK 1125 >UniRef50_Q04S99 Transcription-repair coupling factor n=6 Tax=Leptospira RepID=Q04S99_LEPBJ Length = 1176 Score = 1048 bits (2711), Expect = 0.0, Method: Composition-based stats. Identities = 372/1134 (32%), Positives = 616/1134 (54%), Gaps = 32/1134 (2%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDE-ISQFTDQMVMNLADWETLP 77 + +T + + L + + ++ +V+++ + A L E +S + ++ L E LP Sbjct: 59 VYSVTEGSHSILASSLFQKLNRTIVVVSENNTAAEFLFREALSFISASDLVYLPGQEVLP 118 Query: 78 YDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLS 137 Y+ ++ R+ + ++ ++ V ++ + P + G A+ ++KG+ + Sbjct: 119 YEYLRYPSEMKRERIKAIGKILNGGPSLIFTSVAGFLKTLPPVQTMQGRAITLEKGKEID 178 Query: 138 RDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDV 197 ++L QL GY+ D GE++ +G +LD++ S+ P R+D F +EI+S+R FD Sbjct: 179 LESLLIQLIDLGYKRTDVCETFGEFSLKGGILDIYSSYSQEPVRIDLFGEEIESIRTFDP 238 Query: 198 DSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGI 257 D+QR++ ++ LLP E+ + +++ + PE + + Sbjct: 239 DTQRSMVDLNRAVLLPVDEYILSDEQKKEYQNILKYYSSSLHIPE-----IPEAGYGIYY 293 Query: 258 EYWQPLFFSEPLPPLFSYFPANTLLVNT--GDLETSAERFQADTLARFENRGVDPMRPLL 315 E PL + SYF +L+ + + + L+ FE R + Sbjct: 294 EELVPLVREN--HGILSYFSEPPILLFPSPNSVNQRILHLEREYLSLFEKRSQEV--LCA 349 Query: 316 PPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALR 375 PP L +E + V L LP + ++L A + + + + + Sbjct: 350 PPDKLLSFGEEFRVLSE---LVGLSFVGLPPR-NGSDLVSCLKEAPAFKGKIREVREKIS 405 Query: 376 KFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEAS------DRGRYLMIGA 429 + +V + E + + L L + I + +L++ Sbjct: 406 ELRAEGGWKIVLTSSFEAQTKRLQGLFEKEGIVLLNEGATEPIPFHLGKHKSDAFLVLSE 465 Query: 430 AEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHG 489 +GF+ + + ++ E+D+ G R+ + ++ +++ +L G PVVH+ HG Sbjct: 466 LRNGFIFENQKILILSENDIFGREYKRKTRFKKQNSKA---LQSFIDLKEGDPVVHIHHG 522 Query: 490 VGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDA 549 VGR+ + AGG ++L L YA L+VP+ + LI RY GG E L LG + Sbjct: 523 VGRFLKIERTNAGGKERDFLKLEYAGGDSLFVPLDQISLIQRYIGGTES-PRLDSLGKNT 581 Query: 550 WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAI 609 W + + + + V +A +L+ +Y+ R +G+AF D + F F +E TPDQ +AI Sbjct: 582 WKKTKDRVQKAVETLAEDLVQMYSNRLKLQGYAFPPDTIYQEEFEAEFEYEETPDQIEAI 641 Query: 610 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 669 AV D+ + MDRLVCGDVG+GKTEVA+RAAF +Q+ +L PTT+LA QHY+ F Sbjct: 642 EAVKKDLESSVPMDRLVCGDVGYGKTEVAIRAAFKVAMAGRQIMMLAPTTILALQHYNTF 701 Query: 670 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 729 ++RF N+P+R+E++SRF+++ E +IL++ + GKID++IGTH +L S +K K+LGLLI+D Sbjct: 702 KNRFRNYPLRVELVSRFKTSAEIREILSDFSLGKIDMIIGTHAILSSKLKPKNLGLLIID 761 Query: 730 EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF 789 EE RFGV HKE IK + VD+LTLTATPIPRTL+MA++G+R+LSIIATPP R +V+T+ Sbjct: 762 EEQRFGVNHKEAIKRFKNLVDVLTLTATPIPRTLHMALTGIRELSIIATPPKNRQSVETY 821 Query: 790 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERE 849 V E D ++ EAI EI R GQV+YLYN VE I++ + L E+VPE I I HGQM E E Sbjct: 822 VLEEDEDLIAEAIRNEIQRDGQVFYLYNRVETIEQETKYLGEIVPEVSIGILHGQMTEDE 881 Query: 850 LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 909 +E + DF+++++++LV TTIIE+GID+P NT+ ++RAD FGL+QL+Q+RGRVGRS + Sbjct: 882 IEETLLDFYNRKYDILVTTTIIESGIDMPNVNTLFVKRADLFGLSQLYQIRGRVGRSDRK 941 Query: 910 AYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMET 969 A+A+LL P + +T A+KRL I ++LG+GF +A DLEIRGAG LLG+EQSG + Sbjct: 942 AFAYLLLPKDRVVTEQAEKRLNTIYEYQELGSGFKVAMRDLEIRGAGNLLGKEQSGDIME 1001 Query: 970 IGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKR 1029 +GF LY+ +LE A+ +K E + +T V L +P+ +I D ++ FYK+ Sbjct: 1002 VGFDLYVRMLEEAIARIKGE-----EVVVEVRTSVTLNTNFFIPETYISDTRQKIEFYKK 1056 Query: 1030 IASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEF 1089 A+ E++E+ E+++RFG P+ ART + + ++R A LG + + ++ Sbjct: 1057 FEGARDLQEIDEVYREMVERFGDPPEDARTFILLEKIRTLASNLGFESVTETKDEIKLKS 1116 Query: 1090 AEKNHVNPAWLIGLLQKQPQ-HYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 + + +I L+ P L F + K +++ + + E+ Sbjct: 1117 GSYFKGDHSKIIQLISAGTGLTLNPREPNVLIFQIGKTSEKEKLDTLIFLLSEM 1170 >UniRef50_B2S2U1 Transcription-repair coupling factor n=4 Tax=Treponema RepID=B2S2U1_TREPS Length = 1140 Score = 1046 bits (2705), Expect = 0.0, Method: Composition-based stats. Identities = 370/1160 (31%), Positives = 572/1160 (49%), Gaps = 49/1160 (4%) Query: 3 EQYRYTLPVKAGE-QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 E ++A + TG + E +VL+ P Q+ + +++ Sbjct: 10 ELQHALRSLRAARFPYRVEGCTGGLRSYFFGEYVRTCCAHIVLVVPTEQDVAAVCTDLAH 69 Query: 62 FTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ---RGVLIVPVNTLMQRVC 118 L W +LPY SP+ + S R+ L L + L+ V Sbjct: 70 -AAVPTRVLPWWGSLPYRPVSPNAHVFSHRVEALCALAQRDATAPCAFVFTQRALLTPVP 128 Query: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPM---- 174 P ++ + G+ + L QL GY VD V E++ RG +LD+ Sbjct: 129 PLDYVRTLKRSFRVGEHIEIHTLAAQLMQWGYARVDHVSACAEFSLRGEILDIAAAAQAA 188 Query: 175 GSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDT 234 + YR+ + I+ + + V + L+EV A L A E + I + Sbjct: 189 DNTQAYRIVCDFNTIERIHILAVSTCAVLQEVSACTLYAAKEILWSEERIAFLHQNLQKL 248 Query: 235 FEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF-----PANTLLVNTGDLE 289 E ++++ G E + PL F E + YF P + ++ Sbjct: 249 SECPAHCVPCIEELTHRKTYEGEEMFYPLCF-ERPTCVLEYFRHSPSPPSVFYLDYERQH 307 Query: 290 TSAERFQADTLARFENRGVD----PMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLP 345 A Q + + + P R P+ + L + + T P Sbjct: 308 NGARALQDECRNLYHKMQLAHEHVPARWYPQPEHIVLDFSAVCAL---HLHTVYFTHFFP 364 Query: 346 TKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARI 405 A ++ P + + L + L V ESE + + L+ Sbjct: 365 QLPACESICLASDPARSFFGNIPYFKEELLR-LSKDGWHVFVFAESEQQALRIRALVKGC 423 Query: 406 KIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTI 465 ++ A GF + ++ E ++ G R + R Sbjct: 424 D----------------VTVLPCALSAGFSIPALKILIVQEGEIFGRRRKTPQSVQRARS 467 Query: 466 NPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSS 525 P I EL+ G VVH ++G+G + G+ ++ +Y+ L YA + + +P+ Sbjct: 468 TP---IDTFVELNPGDYVVHAQYGIGLFKGIERIKTAQSERDYVNLLYAQEETILIPIEQ 524 Query: 526 LHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKH 585 HL+ RY G L LG +W + + + V ++A +L+++Y+ R G AF Sbjct: 525 AHLVQRYIGNEGNKPHLDSLGSKSWETRKARVKKSVENIAQKLVELYSLRKTTRGHAFPK 584 Query: 586 DREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA 645 D E F +FP+E T DQ I V DM + + MDRLVCGDVG+GKTE+AMRAAF A Sbjct: 585 DDEWQYAFEAAFPYEETDDQRICIEEVKQDMQEAVPMDRLVCGDVGYGKTEIAMRAAFKA 644 Query: 646 VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID 705 V KQV L PTTLL +QH+ +RF ++PVRIE +SRF EQ ILA++A G ID Sbjct: 645 VMGGKQVVFLTPTTLLVEQHFRTICNRFKHFPVRIEKLSRFVPKSEQKDILAKLAHGDID 704 Query: 706 ILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNM 765 +++GTH+L+Q DV FKDLGL+I+DEE RFGV+ KE++K M+ NVD L+L+ATPIPRTL+M Sbjct: 705 LIVGTHRLIQKDVSFKDLGLMILDEEQRFGVQDKEKLKQMKTNVDCLSLSATPIPRTLHM 764 Query: 766 AMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKA 825 M +RD+S++ TPP RL ++T ++++D +V AI +E+ R GQ++YL+N +EN++ Sbjct: 765 GMLKIRDMSLLTTPPEGRLPIETVIQQFDPNLVATAIRKELDREGQIFYLHNRIENLESV 824 Query: 826 AERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII 885 L +LVPE I + H M ELE + F+ + F +L+ TTIIE GID+P ANTIII Sbjct: 825 KCMLQKLVPELSICVAHSLMGSEELEDIFERFYQKTFQLLLSTTIIENGIDVPNANTIII 884 Query: 886 ERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFAL 945 +RAD +G++QL+QLRGRVGRS +AYA+LL H A++ A KRL+ I+ DLGAGF + Sbjct: 885 DRADMYGVSQLYQLRGRVGRSDKKAYAYLLYYHDVALSDLAIKRLQVISDFTDLGAGFKV 944 Query: 946 ATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVE 1005 A D+EIRG G LLG+EQSG + ++GF LY++LLE A++ L+ + +T ++ Sbjct: 945 ALKDMEIRGVGNLLGKEQSGDIYSVGFDLYVQLLEEAIERLQ-----HAPNEQRIETVID 999 Query: 1006 LRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIAR 1065 L +P +I ++ YK+IA+A T ELE I+ E I RFG +P+ A L +A Sbjct: 1000 LNYRGFIPHTYIAADEIKMELYKKIAAAHTHEELERIRTETITRFGPIPEEAAGLFTVAE 1059 Query: 1066 LRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDG--PTRLKFIQ 1123 ++ + +KL I L+ + +IEF + ++ L+Q RLD P L Sbjct: 1060 IKVRCEKLAILSLKETHESLLIEFDKVCDTAFKKILRLVQTSNDRVRLDAKQPNMLILTS 1119 Query: 1124 DLSERKTRIEWVRQFMRELE 1143 D E K + ++ + ++ LE Sbjct: 1120 DAIEIKEKGIFICEILKRLE 1139 >UniRef50_D0LU01 Transcription-repair coupling factor n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LU01_HALO1 Length = 1257 Score = 1044 bits (2700), Expect = 0.0, Method: Composition-based stats. Identities = 421/1237 (34%), Positives = 626/1237 (50%), Gaps = 124/1237 (10%) Query: 21 ELTGAACATLVAEIAERHA---GPVVLIAPDMQNALRLHDEISQFTDQ------------ 65 LT A+ A + A +AER GPVV++APD +A L +++ F Sbjct: 25 GLTRASLALVAARLAERADERAGPVVVVAPDESSARDLAQDVAFFLPHAQHAAAGTEPLA 84 Query: 66 --MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQR---GVLIVPVNTLMQRVCPH 120 ++L +T PY SP + ++ R++ L +L V+++ L++RV P Sbjct: 85 PPPALHLPALDTSPYAELSPDRLALAQRMAGLVRLARGGALLGPVVVLSAPALLRRVMPR 144 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 L V+ + RDA +L AGY V + G +A RG ++D+F P Sbjct: 145 EALLARTAVLARDDEFDRDATAERLLRAGYTRAPVVEDAGTFAVRGGVIDVFTPLYRYPA 204 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDK--AAIELFRSQWRDTFEVK 238 R++ F D ++S+R+FD +SQRTL +++ + + P E + Sbjct: 205 RIELFGDMVESIRLFDPESQRTLRDLDQVYVHPVRETVVSEGAEVRRRILDAADAAHHPS 264 Query: 239 RDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF------PANTLLVNTGDLETSA 292 + + +++ G GIE P F + L PL SY PA ++V+ + +A Sbjct: 265 AETRRVLERIDSGEEFVGIETLTPAFHTH-LAPLASYLVAGDAPPACWVIVDPDAIGQAA 323 Query: 293 ERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN 352 E R+ R +D R PP ++ DEL + L +L+ L A A+ Sbjct: 324 EDEHDVAEDRYRER-LDDGRLAFPPSDHYVSPDELRATLAEHAY-RLEARGLEMYQAAAD 381 Query: 353 LGFQKLPDLAVQAQQ--------------------------------------------K 368 ++A + Sbjct: 382 PLLSASDEMAAAPEAKSKPKAKSKPKPKPEQDGAQLMRFGVDDNRLLRASLERTRRQAAD 441 Query: 369 APLDALRKFLETFD---GPVVFSVESEGRREALGELLARIKIAPQRIM----RLDEASDR 421 + L + + + + + + R L LL+ + I +D S Sbjct: 442 ELMKPLVEAITAWRGDAYCIAVAAGTMARARQLAGLLSDYECTAHVIEERSVDVDALSPG 501 Query: 422 GR-YLMIGAAEHGFVDTVRNLALICESDLLGERVARR----RQDSRRTINPDTLIRNLAE 476 + G GF L ++ ++ G R R I + ++ Sbjct: 502 APPVIYPGELSAGFALRTDKLVMLTADEIFGPRRRTSVRQRAAARRARKALAGGISDFSQ 561 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAG--GITGEYLMLTYANDAKLYVPVSSLHLISRYAG 534 L G VVH HG+G Y G+ L G ++L + Y + Y+PV L +SRY G Sbjct: 562 LAPGDHVVHAMHGIGLYRGLAKLPVSATGPAVDFLHIEYRGG-QFYLPVYRLGEVSRYVG 620 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 L KLGG W +AR+KA+ +V+ +A ELL +YAQRAA+ G A+ ++ F Sbjct: 621 AEGHAPRLDKLGGVTWQKARKKASAQVKALAEELLKLYAQRAAQPGHAYPSSDHMFREFE 680 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 +F FE TPDQ +AI+ VL+DM MDRLVCGDVG+GKTEVA+RA F AV KQ A+ Sbjct: 681 ATFAFEETPDQQRAIDEVLADMESERPMDRLVCGDVGYGKTEVALRACFKAVAGGKQAAL 740 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 L PTT+L +QHY +RFA WPV + +SRF+S EQ + +A G +D+++GTH++L Sbjct: 741 LAPTTVLVEQHYATVCERFAGWPVSVGRLSRFQSRAEQLDTIKGLAAGTVDLVVGTHRVL 800 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 DV+FKDLGLL++DEE RFGV HKER+K +R +D+LTLTATPIPRTL++AMSG+RDLS Sbjct: 801 SKDVRFKDLGLLVIDEEQRFGVTHKERLKRVRTQLDVLTLTATPIPRTLHLAMSGLRDLS 860 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVE-------------- 820 IIATPPA R AV+TFV + D V+RE I RE+ RGGQV+++ + Sbjct: 861 IIATPPADRRAVRTFVAQVDDGVLREGIRRELGRGGQVFFVCPRIGADPAPSKGKVKGKG 920 Query: 821 ---------------NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVL 865 ++ + AE L LVPEAR+A+ HGQM LE+VM DF +L Sbjct: 921 KSQGETARRVRRGDISLDEWAEHLRALVPEARVAVAHGQMSAEALEKVMIDFVSGNLEIL 980 Query: 866 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTD 925 V TTI+E+G+DI ANT+ ++RAD FGLAQL+QLRGR+GRS +A+ +LL P P+ +++D Sbjct: 981 VSTTIVESGLDIARANTMFVDRADSFGLAQLYQLRGRIGRSKQRAFCYLLVPPPEKLSSD 1040 Query: 926 AQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDA 985 A++RLE + +LGAGF +A+HDLEIRG GELLG +QSG++ +GF Y +LE AV Sbjct: 1041 ARRRLETLQRFSELGAGFQIASHDLEIRGGGELLGAKQSGAIAAVGFEAYAAMLEEAVAE 1100 Query: 986 LKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVE 1045 L++G + + E+ + +P +PD++IPD RL YKR++ A+ E+EL+ + E Sbjct: 1101 LRSGDAG---LVRPRDPELNVDVPGYIPDEYIPDTGQRLDLYKRLSDAEDEDELKILVEE 1157 Query: 1046 LIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQ 1105 + DR+G LPD L D+ L+ A+ L + LE + + AE + P L L + Sbjct: 1158 ITDRYGELPDEVELLADLMVLKIHARTLRAQSLELTQSRMSLALAEDTPLAPQTLASLAR 1217 Query: 1106 KQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 K + +RL RL E + R + EL Sbjct: 1218 K--KAFRLTPDMRLVRNFTAEEGERPSASARACLLEL 1252 >UniRef50_Q55750 Transcription-repair-coupling factor n=43 Tax=Cyanobacteria RepID=MFD_SYNY3 Length = 1199 Score = 1043 bits (2698), Expect = 0.0, Method: Composition-based stats. Identities = 382/1115 (34%), Positives = 590/1115 (52%), Gaps = 49/1115 (4%) Query: 1 MPEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS 60 +P ++ L L +V+ +A+ +++I ++ A R ++ Sbjct: 50 LPLSKDLREKLQKRGHVQLSGLPRLPKGLIVSSLAQSLEKNLLVITATLEEAGRWTAQLE 109 Query: 61 QFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM---QRGVLIVPVNTLMQRV 117 Q V E PYD +++ ++ L +L + ++ L + Sbjct: 110 LMGWQTVNFYPTSEASPYDPGRLESEMVWGQMQVLAELIQGHQVKGKAIVATEKALQPHL 169 Query: 118 CPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE 177 P + L + L +++GQ + +L L GY V G+++ RG ++D+FP+ +E Sbjct: 170 PPVATLREYCLALRRGQEMDSKSLELTLARLGYERGSTVETEGQWSRRGDIVDIFPVSAE 229 Query: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEV 237 LP RL++F DE++ +R FD SQR+L+++ + L P D+ +Q D Sbjct: 230 LPVRLEWFGDELEKIREFDPASQRSLDDLTGLVLTPTS---FDQVIEPALNAQAIDLSAW 286 Query: 238 KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERF 295 D E + G++ + L F+EP L Y P T+ V +ER+ Sbjct: 287 GEDAET-----EQLFGKEGLQRFLGLAFTEP-ACLLDYLPTETVCVLDEPEQCAAHSERW 340 Query: 296 QADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELK-NWPRVQLKTEHLPTKAANANLG 354 + + L L LK ++ + L H +A +L Sbjct: 341 FEAVAQDWSALQL------PNLPQLHRNFSALGDRLKTDFQYITLSEIH---EANGDSLD 391 Query: 355 FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESE---GRREALGELLARIKIAPQR 411 P + Q + LR E + G + + + LL A Q Sbjct: 392 ISARPIPTMPHQFAKLAEILRGKREIYSGLTLGQYSTWLISAQPSRTVSLLQEHDCAVQF 451 Query: 412 IMRLDE--------ASDRGRYLMIGAAEH--GFVDTVRNLALICESDLLGERVARRRQDS 461 I + L GF+ L L+ + +L G+ + Sbjct: 452 IANPRDYPAIEKSQIQRTAVTLKYSGLAELEGFILPTFRLVLVTDRELFGQHALATPEYV 511 Query: 462 RRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYV 521 R+ + ++ +L G VVH HG+G++ + L EYLM+ YA+ L V Sbjct: 512 RKRRRATSKQVDINKLSPGDYVVHKSHGIGKFLKLDAL----ANREYLMIQYADG-ILRV 566 Query: 522 PVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGF 581 P SL +SR+ LHK+GG W + K + V+ +A +LL++YA+RA + G+ Sbjct: 567 PADSLDSLSRFRHTGTRPPELHKMGGKVWEATKNKVRKAVKKLAVDLLNLYAKRAKQVGY 626 Query: 582 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 641 A+ D Q DSFP++ TPDQ +A+ V D+ MDRLVCGDVGFGKTEVA+RA Sbjct: 627 AYPPDSPWQQELEDSFPYQPTPDQLKAVQDVKRDLEGDRPMDRLVCGDVGFGKTEVAVRA 686 Query: 642 AFLAVDNH-KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVA 700 F AV + KQVA+L PTT+L QQHY ++RFA +P+ I +++RFR+A E+ +ILA++ Sbjct: 687 IFKAVTSGNKQVALLAPTTVLTQQHYHTLKERFAPYPITIGLLNRFRTASEKKEILAKLK 746 Query: 701 EGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIP 760 G++DI++GT ++L + VKFKDLGLL++DEE RFGV KE+IK ++ VD+LTLTATPIP Sbjct: 747 SGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKIKTLKTEVDVLTLTATPIP 806 Query: 761 RTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVE 820 RTL M++SG+R++S+I TPP R +KT + Y+ V+R AI E+ RGGQV+Y+ +E Sbjct: 807 RTLYMSLSGIREMSLITTPPPSRRPIKTHLSPYNPEVIRTAIRNELDRGGQVFYVVPRIE 866 Query: 821 NIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880 I++ +L ++VP ARIAIGHGQM E ELE M F+ ++LVCTTIIE G+DIP Sbjct: 867 GIEELGGQLRQMVPSARIAIGHGQMEESELESTMLAFNDGEADILVCTTIIEAGLDIPRV 926 Query: 881 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLG 940 NTII+E A FGLAQL+QLRGRVGRS QA+AWLL P+ K +T A+ RL A+ LG Sbjct: 927 NTIIVEDAQKFGLAQLYQLRGRVGRSGIQAHAWLLYPNQKQLTEKARLRLRALQEFSQLG 986 Query: 941 AGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQ 1000 +G+ LAT D+EIRG G LLG EQSG ME IG+ YME+L++A+ ++ E + Sbjct: 987 SGYQLATRDMEIRGVGNLLGAEQSGQMEAIGYEFYMEMLQDAIKEIQG-----QEIPKVE 1041 Query: 1001 QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTL 1060 T+++L + + +P D+IPD+ +++ Y+RI S ++ +EL +I ++ DR+G+LP P L Sbjct: 1042 DTQIDLPLTAFIPSDYIPDLEEKMAAYRRITSIESTDELPKIALDWGDRYGMLPSPVEEL 1101 Query: 1061 LDIARLRQQAQKLGIRKLEGNEKG-GVIEFAEKNH 1094 + +L+ A+ LG +++ K V+E + Sbjct: 1102 FKVVKLKHLAKSLGFSRIKVEGKQNLVLETPMEEP 1136 >UniRef50_C8W8X2 Transcription-repair coupling factor n=2 Tax=Atopobium RepID=C8W8X2_ATOPD Length = 1147 Score = 1042 bits (2696), Expect = 0.0, Method: Composition-based stats. Identities = 359/1158 (31%), Positives = 568/1158 (49%), Gaps = 43/1158 (3%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 PE + + G L L+ +A ++A + ++ P +L+ A R ++ Sbjct: 14 PELEKLKRELSCGSDATLS-LSQSARPLMLAALWSQNPRPCLLVVAGEDAADRTARSLAA 72 Query: 62 FTDQM-VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH 120 + V+ + + P+ +P II +R + +L ++ +++ + LM+RV P Sbjct: 73 WLGNDAVLRYPNRKDYPWSDATPDDAIIGARCRAIAKLSAGEKVIVVASAHALMRRVPPV 132 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 + G + + + + L GY +V G + G +D+FP + P Sbjct: 133 GSGYFLPATFTVGDDVPFEDVASLLVGMGYADTGEVDAPGTFHIHGDTVDIFPAQATSPV 192 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R++FF DEID +R + +T+ ++ + + PA E K AI + Sbjct: 193 RIEFFGDEIDRIRRMVAATGQTIGAIDEVTVAPARELAFTKEAIRRAEEALYTRAQENSA 252 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL 300 + + +G +E + P+ + + + TL+V D Sbjct: 253 IAADLELIQRGAQAPALERYLPVLYG-GTASPLEHISSETLVVL-----AEPRSLFDDCQ 306 Query: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 360 F+ + L+ + + + R+ + A + L + Sbjct: 307 RAFDEISSSAAASKVKLDGLYTDPKAM--DFGSQQRLSFSSLLRTGAAVTSELSVVQ--- 361 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD---- 416 ++ L +R+ ++ D VVF+V RE L L + I + + Sbjct: 362 PSIAGSDTKLLGRVRQLVQDRD-AVVFAVPDRAAREHLKLLFSDESIPFEESLGTSLENE 420 Query: 417 --------EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPD 468 G + NL+++ SDL R + + I+P Sbjct: 421 PDQNGVYVPLKRGRVTFTDAPVPAGIIIPTANLSVLSVSDLTARSA--RNKKRSKRIDPT 478 Query: 469 TLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHL 528 T+ G VVH HG+ + + E G +Y +L YAND KLYVP+ + Sbjct: 479 TVTFPF---KPGDYVVHATHGIAHFTAIVRQEVAGRERDYFLLEYANDDKLYVPLEQVDR 535 Query: 529 ISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDRE 588 I+RY G N L +L WSRA KA + + +A +L+D+Y +RA+ G+AF D Sbjct: 536 ITRYVGPDGNNPRLTRLNTADWSRATNKARKSAKKLAFDLVDLYTRRASVPGYAFSLDTP 595 Query: 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 + SFP++ TPDQ A+ + DM MDRL+CGDVGFGKTEVA+RAAF A + Sbjct: 596 AQEEMESSFPYQLTPDQESAVADIKLDMEARKPMDRLLCGDVGFGKTEVALRAAFKACQD 655 Query: 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 708 +QV +L PTT+LAQQHY+ F RFA + +++ ++SRF + +Q + L A+G ID+L+ Sbjct: 656 ARQVMILCPTTILAQQHYETFFSRFAPFDLKVSVLSRFVTPAQQRKALEGFADGTIDVLV 715 Query: 709 GTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMS 768 GTH+LL +DV DLGL+I+DEE RFGV+HKE++K MR VD+LTL+ATPIPRT+ MAMS Sbjct: 716 GTHRLLSADVNPHDLGLVIIDEEQRFGVQHKEQLKNMREQVDVLTLSATPIPRTMQMAMS 775 Query: 769 GMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAER 828 G+RD+S+I TPP R V+ V EY+ +V AI E+ R GQVYY+ N V I +A R Sbjct: 776 GVRDMSLILTPPPGRKPVQVTVGEYNPDLVSAAIRSELEREGQVYYVSNRVTTIDEAVAR 835 Query: 829 LAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 + E PEAR+ + HGQM RE+E VM F +VLV TTIIE+GID NT+IIE + Sbjct: 836 VEEAAPEARVGVAHGQMSAREVENVMLAFQEHEIDVLVATTIIESGIDNSHTNTLIIEDS 895 Query: 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATH 948 GLAQL+QL+GRVGR QAYA+ + P +T +A +RL AI +DLG+G +A Sbjct: 896 QRLGLAQLYQLKGRVGRGRQQAYAYFMFPAELPLTEEATERLTAINEFQDLGSGMRIAMR 955 Query: 949 DLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRM 1008 DLEIRGAG L+G EQ G++ ++GF L+ ++L AV + +L + + L Sbjct: 956 DLEIRGAGSLMGAEQHGNLSSVGFDLFTQMLGEAVAEARGE----SAELEQTEVTINLPA 1011 Query: 1009 PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQ 1068 L +D++P+V+ R+ Y+R+A+A ++++ ++ + + FG LP + L D AR+R Sbjct: 1012 DFFLDEDYLPEVDRRVLVYRRLAAATELSDIDALQQDTENSFGALPLAGKNLFDRARVRI 1071 Query: 1069 QAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSER 1128 +AQ+LG + V + + L + P K Sbjct: 1072 RAQRLGATSVSLTNGRLV---YLGVEIPREQALKL----KGRGAIVYPKSHKLAYPFHRN 1124 Query: 1129 KTRIE-WVRQFMRELEEN 1145 + ++ + EL + Sbjct: 1125 EEQLMPAALGVLEELGGD 1142 >UniRef50_C6X2W6 Transcription-repair coupling factor n=17 Tax=Bacteroidetes RepID=C6X2W6_FLAB3 Length = 1138 Score = 1038 bits (2684), Expect = 0.0, Method: Composition-based stats. Identities = 360/1160 (31%), Positives = 582/1160 (50%), Gaps = 83/1160 (7%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMNLADW 73 + G+A + AE+ V+ + D ++AL E+ + V+ Sbjct: 32 RHLSVKGSAGSAPSIFAAELFVTRKKTVLFLIEDKEDALYATAEMEDLLGKENVLYFPAT 91 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQL-PTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKK 132 PY + R L +L + + V+I P ++L ++V + +K Sbjct: 92 HLAPYQIEKTQNANLVLRTDVLNKLNASKKPKVIIAPFSSLSEKVLRKEDFKAISHRIKV 151 Query: 133 GQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 G+ L D L ++ D V E GE++ RG ++D+F +E PYR+ FF +EI+S+ Sbjct: 152 GESLDFDFTGELLQQFNFQLTDFVSEPGEFSVRGGIVDVFSYSNEEPYRISFFGNEIESI 211 Query: 193 RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGT 252 + F++++Q T +V L+ + + + Sbjct: 212 KTFNIETQLTNGKVNEFQLVSNMNYAVSGSKV---------------------------- 243 Query: 253 LPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAE--RFQADTLARFENRGVDP 310 L P ++ +V+ + + + F +E D Sbjct: 244 ------------------SLLGLLPNDSFVVSVNAILATRKISDFFTKADEYYEALNKDI 285 Query: 311 MRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN-LGFQKLPDLAVQAQQKA 369 PP L++ +E ++ + + + L T A+ + + + Sbjct: 286 KHQ--PPAELFVSEEEFLKDIAAFKHIDFTLDTLKTSQADTLLIQLNQTQQPGFHKNFEL 343 Query: 370 PLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMI-- 427 L+ L + + + S +E ++E L + I + I ++ + Sbjct: 344 LLEDLVEK-RNANFDIWISFSTEKQKERLEAIFKEISTPQEMISDSEDLPVFQQKAFFKS 402 Query: 428 --GAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVH 485 GFVD +++ + + R R + + + +++L ++ +G + H Sbjct: 403 FKSELHEGFVDADHKISVYTDHQIFD-RYQRFKAKNTFAKSEQLTLKDLMQMKVGDYITH 461 Query: 486 LEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKL 545 ++HG+G++ G+ + G E LTY N LYV + SLH IS+Y G L KL Sbjct: 462 IDHGIGKFMGLVKVNNNGKVQECFKLTYKNGDLLYVSIHSLHKISKYNGPDGREIVLSKL 521 Query: 546 GGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQ 605 G AW +QK KV+ +A +L+ +YA+R +GFAF D SF +E TPDQ Sbjct: 522 GSPAWKTLKQKTKAKVKQIAFDLIRLYAKRKTAKGFAFTPDSYLQNELEASFIYEDTPDQ 581 Query: 606 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 665 +A V +DM + MDRL+CGDVGFGKTE+A+RAAF A + KQVA+LVPTT+LA QH Sbjct: 582 EKATLDVKTDMEKETVMDRLICGDVGFGKTEIAVRAAFKAATDGKQVAILVPTTILAFQH 641 Query: 666 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 725 Y +F++R ++PV I ++RFR+AK++++ L +AEGKIDI+IGTH+L+ S VKFKDLGL Sbjct: 642 YRSFKERLKDFPVNISYMNRFRTAKQKSETLKGLAEGKIDIVIGTHQLVSSTVKFKDLGL 701 Query: 726 LIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785 LI+DEEH+FGV K+++K ++ N+D LTLTATPIPRTL ++ RDLS+I TPP R Sbjct: 702 LIIDEEHKFGVAVKDKLKTLKNNIDTLTLTATPIPRTLQFSLMAARDLSVIKTPPPNRQP 761 Query: 786 VKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQM 845 V+T + + ++R+AI EI R GQVY++ N +EN++ A + LVP+A++ GHGQM Sbjct: 762 VETSIVGFSEEIIRDAISYEIQRDGQVYFINNRIENLKDIAGLIQRLVPDAKVITGHGQM 821 Query: 846 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 905 ++LER + DF +++VLV TTI+E+G+D+P ANT+ I A FG+A LHQ+RGRVGR Sbjct: 822 EGKQLERNVLDFMEGKYDVLVSTTIVESGVDVPNANTMFINDAQRFGMADLHQMRGRVGR 881 Query: 906 SHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSG 965 S+ +A+ +L+TP MT+DA+KRLEAI DLG+GF +A DLEIRGAG+LLG EQSG Sbjct: 882 SNRKAFCYLITPPFDMMTSDARKRLEAIEQFSDLGSGFQIAMKDLEIRGAGDLLGGEQSG 941 Query: 966 SMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQ----------TEVELRMPSLLPDD 1015 + +GF Y ++++ A++ L+ E + ++ + +LPD Sbjct: 942 FINEMGFDTYQKIMQEALEELQNDEEFGELFENEEDRKKLFKSTKEVNIDTDLELMLPDV 1001 Query: 1016 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 ++ + RLS Y+++A + +L + + EL DRFG LP A+ LL L+ A ++G Sbjct: 1002 YVQSIEERLSLYQKLAEIQNRGDLRKFENELNDRFGALPPEAKNLLKSVELKWIAAEIGF 1061 Query: 1076 RKLEGNEKGGVIEFAEKNHV------NPAWLIGLLQKQPQHYRL-----DGPTRLKFIQD 1124 K+ + F +I L + P L +L Sbjct: 1062 DKIVVKNGVFLGYFPPNPQDKFYQSEKFRNIIAYLHQNPSEATLKEKVNKEGNQLMMR-- 1119 Query: 1125 LSERKTRIEWVRQFMRELEE 1144 E ++ V + + + Sbjct: 1120 -KENVQNVDEVNRVLERIIG 1138 >UniRef50_Q11PH6 Transcription-repair coupling factor n=5 Tax=Bacteroidetes RepID=Q11PH6_CYTH3 Length = 1122 Score = 1037 bits (2683), Expect = 0.0, Method: Composition-based stats. Identities = 366/1163 (31%), Positives = 578/1163 (49%), Gaps = 84/1163 (7%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 + + L + L L+G+ A + A +++ V I D A +++ Q Sbjct: 17 QLLKQKLQERENNALFLKGLSGSMDALIAAALSKSDKKSHVFILADKDEAYFFQNDLQQL 76 Query: 63 TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPT--MQRGVLIVPVNTLMQRVCPH 120 V PY I R TL + + L+ L ++V Sbjct: 77 LGLPVFVFPASYKKPYHYEQVENANILQRAETLNYIINNQDKPSYLVTYPLALSEKVINK 136 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 L + + + G++L+R+ + L S G+ D V E G+YA RG ++D+F +ELP+ Sbjct: 137 RSLVENTFIARIGEKLNREFMEEFLQSYGFERTDFVYEAGQYAIRGGIIDIFSYANELPF 196 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R++ F EI+S+R F+ +SQ +++ + +++ P + K E Sbjct: 197 RIELFGTEIESIRTFNPESQLSVDNIPVLSITPNVQTRLLKEERE--------------- 241 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT--LLVNTGDLETSAERFQAD 298 LF++ PA+T + + E + Sbjct: 242 ------------------------------SLFTFLPADTTLWIKDYALTTEIIEECFSK 271 Query: 299 TLARFENRGVDPMRPLL--PPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQ 356 ++F+ L P +L+ ++ + ++ + F+ Sbjct: 272 VESQFDTILSSTGNSALLTSPDALFEDKYSFEKSIEAYSIIEFGPHS--YIPNATRIEFE 329 Query: 357 KLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD 416 P + + L+ R + ++ + ES + + L +L + + Sbjct: 330 AKPQPSFNKEFNLLLEDFRLRINQ-GYKIIIASESHQQIQRLHSILEELDPYIRFEE--- 385 Query: 417 EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAE 476 MI GF+D RN+ + + R R + R + + ++ L Sbjct: 386 ---------MIIPLREGFIDLQRNILCYTDHQIFD-RFHRYKTKERFSKSKSITLKELRT 435 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 L G V H + G+ R+AG+ +E G T E + L + +D + + + +LH ISRY+G Sbjct: 436 LQPGDFVAHADFGIARFAGLERIENNGHTQEAIRLVFRDDDLMVISIHALHKISRYSGKD 495 Query: 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596 + + KLG W + K +V+D+A EL+ +YA+R A GFA+ D S Sbjct: 496 GQPPVMSKLGSGDWENKKSKVKRQVKDIAKELIQLYAKRKAAPGFAYTPDSFLQVELESS 555 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 F +E TPDQ++A V DM P MDRLVCGDVGFGKTE+A+RAAF AV + KQVAVLV Sbjct: 556 FMYEDTPDQSKATADVKKDMESPHPMDRLVCGDVGFGKTEIAVRAAFKAVCDGKQVAVLV 615 Query: 657 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS 716 PTT+LA QHY FRDR + +P +E I+RF++A + + L V EGK +ILIGT +++ Sbjct: 616 PTTILAMQHYKTFRDRLSRFPCVVEYINRFKTAGQIKETLKRVKEGKTNILIGTQRVISK 675 Query: 717 DVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 776 DV+F+++GLLI+DEE +FGV+ KE+++ + N+D LTLTATPIPRTL+ ++ G RDLSII Sbjct: 676 DVEFQNVGLLIIDEEQKFGVKVKEKLREFKINIDTLTLTATPIPRTLHFSLMGARDLSII 735 Query: 777 ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 ATPP R V T + +D +R+AI E+ RGGQV++++N V++I A + +LVP+A Sbjct: 736 ATPPPNRQPVTTEIHVFDEAFIRDAISFELKRGGQVFFVHNRVKDIDGMAFLIKKLVPDA 795 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 R+ HGQM +LE VM F ++VLV T IIE+G+DIP ANTIII A FGL+ L Sbjct: 796 RVTFAHGQMEGDKLEEVMLKFVEGEYDVLVSTNIIESGLDIPNANTIIINSAHMFGLSDL 855 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 HQ+RGRVGRS+ +A+ +LLTP A+T D++KRL + DLG GF +A DL+IRGAG Sbjct: 856 HQMRGRVGRSNKKAFCYLLTPSVSALTGDSRKRLSVLEEFSDLGDGFKVAMRDLDIRGAG 915 Query: 957 ELLGEEQSGSMETIGFSLYMELLENAVDALKA---------GREPSLEDLTSQQTEVELR 1007 +LG EQSG + +GF +Y ++L+ A+ LK + Q +E Sbjct: 916 NMLGAEQSGFITDLGFDMYHKILDEAIQELKETEFADLFRDELDQQRLKNLVQDCVIETD 975 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 + L+PD ++ +++ RLS Y I + K E EL L DRFG LP L + +LR Sbjct: 976 LSILIPDTYVTNISERLSLYSTIDNIKNETELTSFIQGLTDRFGPLPKEVIDLTETIKLR 1035 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFAEKNHVN------PAWLIGLLQKQPQHYRLDGPTRLKF 1121 AQ+LG KL +F + ++ +Q + ++ + K Sbjct: 1036 WLAQELGFEKLTIKNDVMRCQFVPSERTSYYTSDVFGSILTFVQTHSKKCKMKEVNK-KL 1094 Query: 1122 IQDLSERKTRIEWVRQFMRELEE 1144 + +S+ K+ +E E+++ Sbjct: 1095 LLTISDIKS-VEMALSIFNEIQK 1116 >UniRef50_B1C986 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C986_9FIRM Length = 1150 Score = 1037 bits (2681), Expect = 0.0, Method: Composition-based stats. Identities = 350/1150 (30%), Positives = 600/1150 (52%), Gaps = 37/1150 (3%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNL 70 L ++ + + PV+ I D +A + +S + ++ Sbjct: 20 DKKGSIFLHGVSSNLKDMITVHELYKEKRPVIYILKDDVSAKETYLNLSDILSEKDILYY 79 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVM 130 S ++ + R++ + + +++ +N +++ + + Sbjct: 80 PAKPITHEFIDSHSMELTNKRVNVIKNAVMGSKKIIVTSINAAIEKGLF--WGKDSIITK 137 Query: 131 KKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEID 190 K L D L+ GY +V G Y+ +G ++D+F MG E+P R++FFDDEID Sbjct: 138 KTEDILDIDEFIEILNKFGYAREYEVTGQGAYSVKGGIVDVFIMGDEVPVRIEFFDDEID 197 Query: 191 SLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE----------VKRD 240 S+R FD ++ +++E++ L+PA D I + R E + ++ Sbjct: 198 SIRTFDKNTGKSIEKINKFTLVPAKTSLLDYDEINKLNKKVRAKLEKAITQNEDEEIDKN 257 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLET-SAERFQADT 299 +Y++++ T + S+ L + ++ + + + RF + Sbjct: 258 YRELYEKIADDTNDTTKYIFYA---SKQTKSLIDLYKDPLIIFDDYSIIKKTYNRFFKEN 314 Query: 300 LARFENRGVDPMRPLLPPQSLW--LRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQK 357 ++ + + + +E F L + L + + + Sbjct: 315 KEELKDLAEHGKMLDIQVNNHFKFAEAEERFINLDSLIYFDLSMASNNLFCKDI-VEVKS 373 Query: 358 LPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE 417 ++ +D + +L+ D V+ + ++E ++ L E L+ I Sbjct: 374 SDNINYVKNINYLIDNIVTYLKE-DYKVIITYKNEKEKKNLSEFLSNYNIDYT-----HT 427 Query: 418 ASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAEL 477 + L+ +G L ++ +D+L ++ A++++ + N +E+ Sbjct: 428 VKEGHVALVKSNIRNGVNILSEKLFILSYNDVLIKKEAKKKRTKKDKHNEKAF---FSEI 484 Query: 478 HIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAE 537 G VVH +G+GRY GM +EAGG+ +YL + +A + KLYV + ++L+S+Y G ++ Sbjct: 485 TKGDYVVHETYGIGRYLGMVNMEAGGLYNDYLEIEFAGNDKLYVIANKMNLVSKYIGSSD 544 Query: 538 ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSF 597 L+KLG W + K + V+++A E + +YA+R +GFAF D + F D+F Sbjct: 545 APPKLNKLGSQVWENTKNKTRKAVKELAKEYITLYAKRREIKGFAFSADTPWQKEFEDNF 604 Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 +E T DQ + + V DM +P MDRL+CGDVGFGKTEVA RA F AV + KQ AVLVP Sbjct: 605 GYELTEDQERCVREVKEDMEKPYPMDRLICGDVGFGKTEVAARAIFKAVMDGKQCAVLVP 664 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 TT+LA QHY+ F +RF ++PV+IEM+SRF++ KE+ +I+ ++ GK+DI+IGTHKLL + Sbjct: 665 TTILAMQHYNTFVERFKDFPVKIEMLSRFKTKKEENRIIDKLERGKVDIVIGTHKLLSDN 724 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 V FKDLGLL+VDEE RFGV HK+++K ++ NVD LTL+ATPIPRTLNM++ G+RDLS I Sbjct: 725 VNFKDLGLLVVDEEQRFGVAHKDKLKLLKENVDTLTLSATPIPRTLNMSLIGIRDLSTIE 784 Query: 778 TPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEAR 837 PP R +T+V EYD ++++AI RE+ RGGQV+++YN V+N +K +L +L+P + Sbjct: 785 KPPKEREETETYVIEYDDYIIKDAINRELSRGGQVFFVYNSVKNAEKTCLKLRKLIPGLK 844 Query: 838 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 897 + +GQM ERELE+ M F ++ F+VLVCT I+E G++I ANT+II+ ++ GL+QL+ Sbjct: 845 VEFANGQMPERELEKTMFRFLNKEFDVLVCTAIVENGLNILNANTMIIKEGNNLGLSQLY 904 Query: 898 QLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGE 957 QLRGRVGRS+ AY ++ KA+ A KRL+AI G+GF +A DL+IRG+G Sbjct: 905 QLRGRVGRSNKNAYCYVTYEKDKALNEVAMKRLKAINEFTKFGSGFQIAIRDLQIRGSGN 964 Query: 958 LLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFI 1017 LLG QSG +G+ LY ++L+ A+ K + +T + +++ + + +I Sbjct: 965 LLGANQSGHFTNVGYELYTKMLQEALKESKGEAQ-----KEPVETTINIKINAYIDKKYI 1019 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 D R+ YK IAS +TE + +E+ LID +G + L+DI+ LR +A K I Sbjct: 1020 EDEKQRIITYKEIASIETEADKDEMVENLIDIYGDIRKETLNLMDISLLRNKASKKDILS 1079 Query: 1078 LEGN--EKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWV 1135 + N + +F ++ ++ + L + + + ++ + + + + Sbjct: 1080 INVNEENREIYFDFDKEKEIHMDKINKLYEIFKGKF-IKNSKFIRICFPYKKTRNVHQSI 1138 Query: 1136 RQFMRELEEN 1145 + + ++ +N Sbjct: 1139 MKLIDKIIDN 1148 >UniRef50_A6CB65 Transcription-repair coupling factor n=2 Tax=Planctomyces RepID=A6CB65_9PLAN Length = 1112 Score = 1036 bits (2679), Expect = 0.0, Method: Composition-based stats. Identities = 382/1148 (33%), Positives = 596/1148 (51%), Gaps = 76/1148 (6%) Query: 4 QYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT 63 T +++G+ + G +CA A IA ++++ P + +++ F Sbjct: 25 FAAVTAALRSGQSGTIDGAWGGSCALAAASIATALDSVLLIVLPRLSEIDEFTGDLASFL 84 Query: 64 DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ-----RGVLIVPVNTLMQRVC 118 + WETLP + + RL L +L V++ L+Q V Sbjct: 85 GTIPEIFPAWETLPDEHDVADT-VFGGRLRVLSRLQHSGGNESTPQVIVTSFPALLQPVP 143 Query: 119 PHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEL 178 ++ G + DA L G+ + GE++ G +LDL+ S L Sbjct: 144 SRKQREAATRRIQVGDEIDTDAFMKWLLERGFERTTAIQLPGEFSMHGGILDLYSPDSAL 203 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK 238 P R++FF DE++S+R FDV++QRTLE + ++L P + +L + Sbjct: 204 PIRIEFFGDEVESIRQFDVETQRTLETCQQVDLTLISPVPASVSGRQLQTPNRDEDGTTS 263 Query: 239 RDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQAD 298 L P + E E Sbjct: 264 E-------------------------------SLLDNLPPEACIALIELPELIDE--GKR 290 Query: 299 TLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKL 358 L R EN P+ L+ V + ++P V + + + +L + + Sbjct: 291 YLDRLEN-----------PRGLF-SVPATMARCTDFPSVTIAPISAESTEISCHLQIESV 338 Query: 359 PDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEA 418 + L+ L + D V+ ++G ++ L ELL ++ Sbjct: 339 E--RFTRSKSQMLEELASIIGPQD-TVLVCCHNQGEQDRLQELLDESELDLS-------- 387 Query: 419 SDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELH 478 IG GF +L ++ + +L G R + R+ I + +L+ Sbjct: 388 --ERVKTCIGNLALGFRIVPEHLVVLSDHELFGRADIRHKPRKRK--VESRAIDSFLDLN 443 Query: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEE 538 +G VVHL HG+ R+ G+ LE G E+L L + + ++YVPVS +HL+ +Y GG + Sbjct: 444 VGDFVVHLSHGIARFRGLELLEKEGYREEHLSLEFRDKVQMYVPVSLVHLVQKYIGGGKH 503 Query: 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFP 598 L KLG +W+ ++KAAE VRD+A+++L + AQR+ + G ++ D + F SFP Sbjct: 504 VPRLSKLGTKSWASKKEKAAEAVRDMASDMLRLQAQRSGQPGISYPPDSHWQKEFEASFP 563 Query: 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 658 + T DQ AI+ V DM + MDRL+CGDVG+GKTEVA+RAAF A+D KQVAVLVPT Sbjct: 564 YTETSDQLHAISDVRHDMERAQPMDRLICGDVGYGKTEVAIRAAFKAIDAGKQVAVLVPT 623 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 T+LA+QH F +R A++P+ IE +SRF+S KEQ IL +A G +D++IGTH+L+Q D+ Sbjct: 624 TVLAEQHTRTFSERMADYPITIEGLSRFKSKKEQRAILEGMAAGSVDLVIGTHRLIQKDI 683 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 KFKDLGLLI+DEE RFGV KE +K +R +D+LTL+ATP+PRTL+M++ G+RD+S + T Sbjct: 684 KFKDLGLLIIDEEQRFGVEAKEMLKRLRLQIDVLTLSATPVPRTLHMSLLGIRDISNLTT 743 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 P R+ ++T + +D ++R A++RE+ R GQVY+++N V ++QK A+R+ ++VPEA I Sbjct: 744 APRDRVPIETRITRFDPELIRHAMVRELNRNGQVYFVHNRVHDLQKYADRIQQIVPEASI 803 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 IGHGQM+E ELE M +F + ++ VCTTIIE+G+DIP ANTI I A + GL+ LHQ Sbjct: 804 GIGHGQMKETELEAAMLNFVSGKVDIFVCTTIIESGLDIPNANTIFIHDAGNHGLSDLHQ 863 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 LRGRVGRSHH+AY +LL + +T A KRL+AI +LGAGF +A DLEIRGAG + Sbjct: 864 LRGRVGRSHHRAYCYLLLRDGQMLTPIAAKRLKAIEEYSELGAGFKIAMRDLEIRGAGNI 923 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIP 1018 LG EQSG + +G+ LY +LLENA LK ++L + LP D+IP Sbjct: 924 LGTEQSGHIAAVGYELYCQLLENACRKLKNEPIR-----EHHHVAIDLPCTAYLPSDYIP 978 Query: 1019 DVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 ++ Y+++++ ++ EL ++ E+ DRFG +P PAR LL + L+ +Q+ + + Sbjct: 979 PGRIKIELYRKLSAVRSLEELNALEEEMEDRFGPIPHPARQLLILKELQILSQRWQVDSI 1038 Query: 1079 EGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQF 1138 V+ + +KNH ++ L + + + L +E V Q Sbjct: 1039 RLENNFAVLGYRDKNH-----ILALSKSNQDRIPVRIVDQKSAYIPLPISAENLEEVMQE 1093 Query: 1139 MRELEENA 1146 ++ + + + Sbjct: 1094 LKTVLQQS 1101 >UniRef50_C6A8D1 Transcription-repair coupling factor n=17 Tax=Actinobacteridae RepID=C6A8D1_BIFLB Length = 1194 Score = 1035 bits (2676), Expect = 0.0, Method: Composition-based stats. Identities = 410/1176 (34%), Positives = 620/1176 (52%), Gaps = 71/1176 (6%) Query: 10 PVKAGE---QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT--- 63 V AGE +L L A A+R PVV++ P + A L ++ + Sbjct: 47 HVDAGEDADPSILVGAPNGIRPALAAASADR--KPVVIVVPSGREAEDLVGDLRSWYDGD 104 Query: 64 DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQR--------GVLIVPVNTLMQ 115 V L WETLP++ SP D +++R+ T Y+L Q +L++PV +L+Q Sbjct: 105 PNEVAQLMAWETLPHERLSPRADTVANRMETFYRLCHPQSDSEMFGPIRILVMPVRSLIQ 164 Query: 116 RVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175 V LV +G+ ++ + L Y VD VM+ GE+A RG ++D+F Sbjct: 165 PVVA-GIGDVKPLVFAQGEEITLEDAVQGLVRNSYTRVDLVMDRGEFAVRGGIIDVFVPT 223 Query: 176 SELPYRLDFFDDEIDSLRVFDVDSQRTL-EEVEAINLLPAHEFPTDKAAIELFRSQWRDT 234 P R++FF DEID++R F QRT E + ++ P E E R + + Sbjct: 224 EPHPVRIEFFGDEIDTIRRFHSSDQRTYGEPIRSVWATPCRELQLT----EGIRERAQSL 279 Query: 235 FEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLL--VNTGDLETSA 292 + + + + ++ G+E P + L P+ S P + ++ + L + Sbjct: 280 IGQIPNADDLLESIANAIPQEGMESLIPALVDD-LEPVSSMLPRDCIVMLFDPERLRRAV 338 Query: 293 ERFQADTLARFENR------GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPT 346 + G P+ + +L +DE+ +L K Sbjct: 339 DDLMKTANEFLATSWHVAASGHGAGAPISFEAANFLDLDEVVGQLTYSNHELWKVSGFTV 398 Query: 347 KAANA-NLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARI 405 + ++ + + + D L + + D VV + ++G L +L I Sbjct: 399 DQSLPGHVQIDAVAPQDLHGSGEKAEDHLGELIRK-DYAVVITAAAQGTLSRLKRMLNEI 457 Query: 406 KIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTI 465 + +R + GF+D AL+ E DL G + R Sbjct: 458 GVVHFDTIRSQA-------------QDGFIDHASKTALLTERDLTGRTSVAAGVKTARKR 504 Query: 466 NPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGI----TGEYLMLTYAND----- 516 +L EL G VVH +HG+GR+ M G T EYL++ YA Sbjct: 505 RKSI---DLMELKPGDFVVHEQHGIGRFIEMRQRTTGSGKNQATREYLVIEYAPSKRNAP 561 Query: 517 -AKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR 575 KL++P L +S+Y G E L+KLGG W++ + KA + V ++A L+ +Y+ R Sbjct: 562 PDKLFIPTDQLDQVSKYIGA--EIPKLNKLGGSDWAQTKAKAKKHVHEIAQNLIRLYSAR 619 Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 +GFAF D + D+FP++ T DQ I+ V +DM +P+ MDRL+CGDVGFGKT Sbjct: 620 QRAKGFAFSKDTPWQKELEDAFPYQETADQLTTIDDVKADMEKPIPMDRLICGDVGFGKT 679 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 E+A+RAAF AV + KQVAVLVPTTLL QQH F +RF +PV + +SRF+S KE + Sbjct: 680 EIAIRAAFKAVQDSKQVAVLVPTTLLVQQHLQTFTERFEGFPVNVRAMSRFQSTKEINET 739 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 + +A+G +D++IGTHKLL +KFKDLGL+I+DEE RFGV KE +KA+R NVD+L+L+ Sbjct: 740 IKGLADGTVDVVIGTHKLLNPKIKFKDLGLVIIDEEQRFGVEAKETLKAVRTNVDVLSLS 799 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYL 815 ATPIPRTL MA++G+R++S +ATPP RL V T+V Y+ V AI RE+LRGGQV+Y+ Sbjct: 800 ATPIPRTLEMAVTGIREMSTLATPPEDRLPVLTYVGAYEDAQVTAAIRRELLRGGQVFYI 859 Query: 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 +N VE I++ A+RL +LVPEARI I HG+M ++L++++ DF H+ +VL+CTTI+ETG+ Sbjct: 860 HNRVEGIEEKAKRLQDLVPEARIGIAHGKMGRKQLDQIIRDFWHRDIDVLLCTTIVETGL 919 Query: 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 DI ANT+I++RAD FGL+QLHQLRGRVGR +AYA+ L K MT + +RL IA Sbjct: 920 DISNANTLIVDRADRFGLSQLHQLRGRVGRGRDRAYAYFLYDPSKPMTEQSHERLVTIAQ 979 Query: 936 LEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLE 995 LG+GF +A DLE+RG G LLG+EQSG +E +GF LY+ ++ A++ K E Sbjct: 980 NTALGSGFDVAMKDLELRGTGNLLGDEQSGHIEGVGFDLYVRMVSEAIEDYK-----DPE 1034 Query: 996 DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPD 1055 ++L + + +P D+I RL Y+++A A++E +L E++ EL DR+G P Sbjct: 1035 RTEPVAVTIDLPIEASIPVDYIGSDKLRLEVYRKLAGARSEKDLNELRDELTDRYGKPPK 1094 Query: 1056 PARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE---FAEKNHVNPAWLIGLLQKQP--QH 1110 +L D+ARLR++A+ LGI ++ G + I AE + + + Q +P Sbjct: 1095 VFESLFDVARLREKARALGISEIIGQGRKLRISKIDPAESVQLRISRIYPGAQYRPMLNA 1154 Query: 1111 YRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENA 1146 Y + P E + W Q + +L +A Sbjct: 1155 YTIPTPFEGSMGSGPMESDEVLRWTEQLLDDLAWSA 1190 >UniRef50_C7PET5 Transcription-repair coupling factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PET5_CHIPD Length = 1126 Score = 1034 bits (2673), Expect = 0.0, Method: Composition-based stats. Identities = 368/1127 (32%), Positives = 566/1127 (50%), Gaps = 89/1127 (7%) Query: 19 LGELTGAACATLVAEIAERHAG-PVVLIAPDMQNALRLHDEISQFT-DQMVMNLADWET- 75 L LTG+A + A E + I D + A H+++ T + D Sbjct: 33 LTGLTGSATTFVAAGAWEMANSVNHLFILNDREEAAYFHNDLESITQGLDIFYFPDSFKK 92 Query: 76 --LPYDSFSPHQDIISSRLSTLYQLPTMQ--RGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 + S H + R L + + VL+ L ++V G+ + +K Sbjct: 93 AGFFNEINSSHSML---RTEALMKFSGNAVHKKVLVTYPEALWEKVAASVAYTGNMVQLK 149 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 G L D L +L S G+ D V E G+YA RG +LD++ G+E PYR++ F ++IDS Sbjct: 150 VGDVLKVDDLLNKLVSWGFEFTDFVYEPGQYALRGGILDIYSFGNEKPYRIELFGEDIDS 209 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKG 251 +R+FD +SQ + ++ + L+ + +G Sbjct: 210 IRLFDPESQLSERKLNQVTLIANMDT--------------------------------QG 237 Query: 252 TLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG-----DLETSAERFQADTLARFENR 306 L + P NT++ D+ E L + Sbjct: 238 LKHE-------------KASLLGFLPENTIVWMKDPGYVQDVILQLEERLDAFLQTGQQV 284 Query: 307 GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANA--NLGFQKLPDLAVQ 364 V + ++ +++ + +L + + A L F+ Sbjct: 285 KVGDDDTIALSEADFVKAHAMMQDLLRRHCIVFGSRQWWEDTNRAFIPLNFETQEQPVFN 344 Query: 365 AQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY 424 Q + + L + + E+ + E L + +K Sbjct: 345 RQFEMLIKDLDAHNKN-KYTLFIFAENARQLERLRSIFEDLKADFTFFP----------- 392 Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 + HGF+D L + + +R + + N ++ L EL G V Sbjct: 393 -IPSPVSHGFIDHSLKLVCYTDHQIF-QRYHKYKVKQAYNKNKAITMKTLRELQAGDFVT 450 Query: 485 HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544 H++HGVG Y+G+ +E GG E + + Y N+ LYV ++SLH IS+Y+G ++K Sbjct: 451 HIDHGVGVYSGLQKIEVGGKMQEAIRIIYKNNDLLYVNINSLHKISKYSGKEGVEPRVNK 510 Query: 545 LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604 LG DAW + ++KA +V+D+A +L+ +YA R A+ GF D SF +E TPD Sbjct: 511 LGSDAWDKLKEKAKTQVKDIAKDLIQLYAARKAQTGFPHSPDTYLQTELEASFLYEDTPD 570 Query: 605 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 664 Q++A V DM P MDRLVCGDVGFGKTE+A+RAAF ++ + KQ AVLVPTT+LA Q Sbjct: 571 QSKATADVKRDMQSPAPMDRLVCGDVGFGKTEIAVRAAFKSIVDGKQAAVLVPTTILAFQ 630 Query: 665 HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 724 HY F DR ++P ++ ++RF+SAKE+ + L +AEGKIDI+IGTH LL DVKFKDLG Sbjct: 631 HYKTFSDRLKDFPCTVDYLNRFKSAKEKKETLQRLAEGKIDIIIGTHALLSKDVKFKDLG 690 Query: 725 LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784 +++VDEE +FGV KE++K ++ NVD LTLTATPIPRTL ++ G RDLS+I TPP R Sbjct: 691 VMVVDEEQKFGVAAKEKLKQLKINVDTLTLTATPIPRTLQFSLMGARDLSVINTPPPNRQ 750 Query: 785 AVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 844 ++T V +D ++R+AI E RGGQVY++YN V+ + + + + L P+ IA HGQ Sbjct: 751 PIETEVHVFDHDLIRDAIYYETERGGQVYFVYNRVKGLGEMSSLIKGLCPDLSIATAHGQ 810 Query: 845 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 M +LE V+ DF ++++VLVCT I+E+G+DIP ANTIII A HFGL+ LHQLRGRVG Sbjct: 811 MEGHQLEEVILDFIDRKYDVLVCTNIVESGVDIPNANTIIINNAHHFGLSDLHQLRGRVG 870 Query: 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 964 RS+ +A+ +LL P + D++KRL+ + +LG+GF +A DL+IRGAG LLG EQS Sbjct: 871 RSNKKAFCYLLAPPISTLPGDSRKRLQTLEQHSELGSGFQIAMRDLDIRGAGNLLGGEQS 930 Query: 965 GSMETIGFSLYMELLENAVDALKAGR-------EPSLEDLTSQQTEVELRMPSLLPDDFI 1017 G M IGF +Y ++L+ A+ LK + + ++ + L+PD ++ Sbjct: 931 GFMAEIGFDMYQKILDEAIRELKQNEFRDLFKDQLEEKKDFVSDCTIDTDLEILIPDSYV 990 Query: 1018 PDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK 1077 + RL+ Y+ + + E++L+ +VE+ DRFG +P+P + L + R R A KLG K Sbjct: 991 ESIQERLNLYQELDNITLESKLQAFEVEMQDRFGPVPEPVKDLFCMIRCRWMAIKLGFEK 1050 Query: 1078 LEGNEKGGVIEFAEKNHVN------PAWLIGLLQKQPQHYRLDGPTR 1118 + E F ++ LQ + + +L + Sbjct: 1051 MMLKEGKLRCYFINNPDSPYFESPTFNHILTYLQTRVNNAKLRQVGK 1097 >UniRef50_A4A0Y1 Transcription-repair coupling factor n=1 Tax=Blastopirellula marina DSM 3645 RepID=A4A0Y1_9PLAN Length = 1077 Score = 1032 bits (2670), Expect = 0.0, Method: Composition-based stats. Identities = 364/1141 (31%), Positives = 584/1141 (51%), Gaps = 94/1141 (8%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 E + AG + + + G+ACA + A I AGP++++ P + + + D + F Sbjct: 26 EFRELVTQIAAGRKGTIEGVWGSACALITAAIEPDIAGPLLVVCPSLADIDDVSDALRTF 85 Query: 63 TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM-QRGVLIVPVNTLMQRVCPHS 121 + ++ WE+ + H +I RL L QL Q +++ + +L+Q V + Sbjct: 86 SSAEIVQFPAWESDRSERLL-HDEIYGRRLRVLKQLTHGPQPAIIVTSIESLLQPVPSAA 144 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 + ++ + G +L + L L + V GE++ RG +LD+F E P R Sbjct: 145 NVAANSRRVAVGDQLDVEELAQWLVRHKFHSTSAVELPGEFSLRGGILDVFAPDWEQPAR 204 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP 241 ++ F DEI+S+R F++ +QR+L +E + + Sbjct: 205 IELFGDEIESIRQFEIGTQRSLHPLETVEITVLR-------------------------- 238 Query: 242 EHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLA 301 + Y P + V + L Sbjct: 239 ----------------------YGKGQTGHFSDYLPTASACVLIE--LERMKDSAEQYLD 274 Query: 302 RFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDL 361 R E + E +L+ + L A+ L F+ + Sbjct: 275 RLEKIEDK------------FGLHETLQKLQPLGSLSLSGVASGHLDASLTLHFESVEQF 322 Query: 362 AVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR 421 + + + L + V ++E + L E+ ++ Sbjct: 323 S--GEIERVRGELEAL--SNGQDVYIICQTEAEIDRLSEVFEGGELQ----------RAG 368 Query: 422 GRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQ 481 Y +G GF ++ L+ L R R+ T +I + +L G Sbjct: 369 RLYFALGRLPQGFRYREESVVLVSGDQLF----HRVRRQRPATRKLGKVIDSFLDLRKGD 424 Query: 482 PVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541 VVHL HG+GRY G+ +E E+L + + K+YVP S + L+ +Y GG++ P Sbjct: 425 LVVHLAHGIGRYRGLKKIEKQRQVEEHLEIEFHGGTKVYVPASKVELVQKYVGGSKSRPP 484 Query: 542 LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFET 601 L K+GG W + ++ + V D+A ELL++ A R ++ G AF D + F SFP+E Sbjct: 485 LAKIGGVTWQKQKKAVEQAVHDLAGELLEVQAMRRSRPGIAFSADTLWQREFDLSFPYEE 544 Query: 602 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLL 661 T DQ AI + DM QP MDRL+CGDVGFGKTEVAMR AF AVDN QVA+LVPTT+L Sbjct: 545 TTDQLTAIGNIKFDMEQPRPMDRLLCGDVGFGKTEVAMRGAFKAVDNGYQVAILVPTTIL 604 Query: 662 AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFK 721 A+QHY + R+R A +P I +SRF SAKEQ ++ + +G IDI++GTH+L DV F+ Sbjct: 605 AEQHYKSLRERMAEFPFTIARLSRFASAKEQRDVVKGLKDGTIDIVVGTHRLASKDVSFQ 664 Query: 722 DLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA 781 +LGL+++DEE RFGV KER+K +R VD+LT+TATPIPRTL+M++ G+RD+S + TPP Sbjct: 665 NLGLVVIDEEQRFGVEIKERLKQLRTTVDVLTMTATPIPRTLHMSLVGVRDISNLETPPL 724 Query: 782 RRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIG 841 R+AV+T V + ++R A+LRE+ RGGQ+++++N V++I+ A +L +VPEA+I IG Sbjct: 725 DRVAVETKVSRWGDELIRHAVLRELSRGGQIFFVHNRVQDIELIAAKLQRIVPEAKIGIG 784 Query: 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901 HGQM E LE+VM DF +F++L+ TTI+E+G+DIP ANTI I+ A+ +GL++LHQLRG Sbjct: 785 HGQMGEGALEKVMTDFIAGKFDLLLATTIVESGLDIPNANTIFIDEANRYGLSELHQLRG 844 Query: 902 RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961 RVGR H+AY ++L + ++ A KRL AI +GAGFA++ DLEIRGAG +LG Sbjct: 845 RVGRYKHRAYCYMLLQPGRHLSPVAAKRLHAIEEFSHMGAGFAISMRDLEIRGAGNILGT 904 Query: 962 EQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVN 1021 +QSG + T+G+ LY +LLE AV +K + + +V+L + LPDD++ D+ Sbjct: 905 QQSGHIATVGYELYCQLLETAVRRMK-----RMPSKMTIDVDVDLPGETYLPDDYVNDMR 959 Query: 1022 TRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGN 1081 ++ Y+R+ ++ +L +K E+ DRFG PDP +L + ++ A I + Sbjct: 960 QKIDLYRRMTRVASDEDLTNLKEEMQDRFGPFPDPVERMLRMTEIKLDAAFWQINAIFLE 1019 Query: 1082 EKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRE 1141 E+ V++++++ + L + + + +R+ + L + + + + Sbjct: 1020 EEYLVLQYSDR-----GRVEQLARLRGRDFRIVDDKSVYV--PLKSNEQDADAIINKTKS 1072 Query: 1142 L 1142 + Sbjct: 1073 I 1073 >UniRef50_Q1Q1A4 Similar to transcription-repair coupling factor n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1A4_9BACT Length = 1092 Score = 1032 bits (2668), Expect = 0.0, Method: Composition-based stats. Identities = 380/1154 (32%), Positives = 595/1154 (51%), Gaps = 96/1154 (8%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERH------AGPVVLIAPDMQNALRLH 56 + + +G+ + L G++ A +A H ++L+ PD ++A Sbjct: 13 QYKEIIRQLSSGKGCCVNGLWGSSANLFAAAVANEHFYTKGLTPKILLVVPDAEDAREDW 72 Query: 57 DEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG------VLIVPV 110 +++ F++ V E + + ++DI++ RL L QL + V++ + Sbjct: 73 EDLKTFSNLPVTLFPAVEDIFNNESDAYEDIMAQRLFILNQLCRKNKDASHQTDVIVSSI 132 Query: 111 NTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLD 170 L+Q V + + + +KGQ + L L S Y+ QV GEYA RG ++D Sbjct: 133 QALIQPVPSKKTIGDNIVSFQKGQEYPMENLIGLLHSHHYQETSQVENQGEYAIRGGIID 192 Query: 171 LFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQ 230 +FP +E+P R+++F DEI+S+R F+V++Q+++ ++ + +L H+ Sbjct: 193 IFPFATEIPCRIEYFGDEIESVRSFNVETQQSVAQINSCQILFVHK-------------- 238 Query: 231 WRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLET 290 + P+ L Y T ++ Sbjct: 239 --------------------------MYGLHPMQGEIQKTSLLDYLSGETTIILKEPTRI 272 Query: 291 SAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAAN 350 ++ Q + ++ +E+F +LK + ++ L LP N Sbjct: 273 ESKLRQMLEITDYKEAL--------------FTEEEIFKQLKTFTKITLS--KLPFTTEN 316 Query: 351 ANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQ 410 FQ Q + + +K E D +VF + + E+ + + Q Sbjct: 317 NAYAFQVKAIDEFPRQIQDIVAEFKKITEAHDKTIVF-CINPAEEQRFREITSGLPEGLQ 375 Query: 411 RIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTL 470 R L G GF N+A++ ++ Sbjct: 376 RFE-----------LRRGYISQGFRFADINIAILANHEIFHRYKQHHEVKKVVQTRA--- 421 Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 I + +L G +VH+ HG+GR+ G+ +E G EYL+L Y K+YVP + + L+ Sbjct: 422 IDSFLDLKKGDYIVHVTHGIGRFLGIEIIEDDGCKREYLVLEYDEGTKIYVPATKIELVQ 481 Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 +Y G + A L K+ +W +++A V D+A++LL I A R AKEG + D + Sbjct: 482 KYIGASGHKAKLDKIHSKSWEMRKKRAEHAVADIASDLLHIQASRNAKEGITYPPDTKWQ 541 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 + F +F +E TPDQ Q + + SDM MDRL+CGDVG+GKTE+A+RAAF A K Sbjct: 542 RDFESAFIYEETPDQLQVLETIKSDMQSKRPMDRLICGDVGYGKTELAIRAAFKAAMYGK 601 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Q AVLVPTT+LAQQHY F +R A++PV IE++SR +S KEQ IL + GKIDILIGT Sbjct: 602 QAAVLVPTTILAQQHYTTFSERMADYPVEIEVLSRLKSHKEQKDILEKTLAGKIDILIGT 661 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H+LLQ DV FKDLGL+I+DEE RFGV HKER K MR VD+LTLTATPIPRTL+M++ G+ Sbjct: 662 HRLLQKDVVFKDLGLVIIDEEQRFGVAHKERFKKMRQVVDMLTLTATPIPRTLHMSLMGI 721 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 +D+S + TPP R +++T + +D +R+AIL E+ R GQVY+++N V NI++ A L+ Sbjct: 722 KDISSLNTPPLGRQSIRTQIMRFDPQRIRQAILLEMNRNGQVYFVHNRVYNIERIAHTLS 781 Query: 831 ELVPEARIAIGHGQ-MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 +VPEARI + HGQ M E+ L + M DF + ++LV TTIIE+G+DIP NTI I AD Sbjct: 782 TIVPEARILVVHGQMMDEKLLAQRMKDFVDHKADILVSTTIIESGLDIPNVNTIFINCAD 841 Query: 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHD 949 FGLA LHQLRGRVGR H AYA+++ P + +T +A+KR++AI +LGAGF +A D Sbjct: 842 SFGLADLHQLRGRVGRYKHHAYAYIVLPIDRPVTPEAEKRVKAIEEFAELGAGFKIAMRD 901 Query: 950 LEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMP 1009 LEIRGAG +LG EQ G + +G+ +Y LLE AV + ++L + Sbjct: 902 LEIRGAGNILGVEQHGHIAAVGYEMYCRLLEIAVCKARNE-----PVSEPPDVSLKLNLE 956 Query: 1010 SLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQ 1069 S LPD++IP+ + ++ Y+R+ + T E++EI+ E+IDRFG P + LL + LR Sbjct: 957 SFLPDEYIPEYSLKMDIYRRLNRSNTFKEIDEIRKEMIDRFGNAPQSVKNLLSESELRII 1016 Query: 1070 AQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTR--LKFIQDLSE 1127 A+ IR + +I+ + L K ++ R+ L+ ++D Sbjct: 1017 ARDSKIRSIVRVNNTLIIQVNDLKKAEIC-----LSKLKKNIRVINNDTLHLRLLKDRMH 1071 Query: 1128 RKTRIEWVRQFMRE 1141 + + ++++ + + Sbjct: 1072 PEDLVHYLKKSLTD 1085 >UniRef50_D2NP15 Transcription-repair coupling factor n=2 Tax=Rothia mucilaginosa RepID=D2NP15_9MICC Length = 1330 Score = 1030 bits (2664), Expect = 0.0, Method: Composition-based stats. Identities = 410/1171 (35%), Positives = 608/1171 (51%), Gaps = 88/1171 (7%) Query: 10 PVKAGEQRLLGELTGAACATLVAEIAERHAGPV-----VLIAPDMQNALRLHDEISQFTD 64 P + + L+G + G A L+A+I+ ++IAP + A L + + Sbjct: 122 PTERSARTLIGAVAGTH-AALIADISTAVRDTTAEALSLIIAPTDRQAEDLAAALRSYLP 180 Query: 65 Q-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQL---PTMQRGVLIVPVNTLMQRVCPH 120 + WETLP++ SP D + RL L + + V+I PV ++Q + Sbjct: 181 AADIALFPAWETLPHERLSPRSDTVGRRLQVLRAMTGDADKRPQVVIAPVRAVIQPIVT- 239 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 + + +G+ + L+ A Y VD V + GEYA RG ++D+FP + P Sbjct: 240 GIEKLEPVHLVRGEEYPFKDVVRGLNDAAYSRVDLVAKRGEYAVRGGIIDVFPPTATTPV 299 Query: 181 RLDFFDDEIDSLRVFDVDSQRTL---EEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEV 237 RL+FF DE+D +R F V QRTL EE+ + LLP E + D Sbjct: 300 RLEFFGDELDEMRHFSVADQRTLSGGEELTELTLLPCRELLITPEVMSRAARLKADY--- 356 Query: 238 KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG---------DL 288 + ++++ G G+E PL E + L PA ++++N DL Sbjct: 357 -PAAAAMLEKIAGGIYVEGMESLTPLLI-ESMNTLTELLPAGSMIINVEPERVRARAEDL 414 Query: 289 ETSAERFQA---DTLARFENRGVDPMRPLLPPQSLWLRVDE-----LFSELKNWPRVQLK 340 + E F A DT A + + L S + +D+ L ++L W +L Sbjct: 415 VATNEEFLAAAWDTSAEADAVAPIDLGQLRMSDSGFRTIDQTTAQALEAKLSWWEITELV 474 Query: 341 TEHLPTKAANANLG----------------FQKLPDLAVQAQQKAPLDALRKFLETFDGP 384 T+ + A L P A + L + + Sbjct: 475 TDADLLEDAAGALQNQNIADAIEDGIDTYTVNATPATAFNGSVERMLSQVGDLIRQQ-WT 533 Query: 385 VVFSVESEGRREALGELLARIK----IAPQRIMRLDEASDRG-----RYLMIGAAEHGFV 435 V+ G + L +L + + R L+ + A GF+ Sbjct: 534 VLALTNGRGSTDRLIDLFHSGEGAPAVPAARRTSLEADPAGKLEHGIVEVCEAPASAGFL 593 Query: 436 DTVRNLALICESDLLGER---VARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGR 492 LA+ E++LLG R R + + L+ G VVH HG+GR Sbjct: 594 VEEAKLAVFTEAELLGRRGTYAPRGAAGQKFKTRRRRNAVDPLALNPGDYVVHERHGIGR 653 Query: 493 YAGMTTLEAGGIT--------GEYLMLTYAND------AKLYVPVSSLHLISRYAGGAEE 538 + MT+ G + EYL++ YA +L+VP L LIS Y G E Sbjct: 654 FVEMTSRPVAGASPVNGVQPMKEYLVIEYAPAKRGGAPDRLFVPSDQLDLISNYVG--GE 711 Query: 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFP 598 N L K+GG W++ + +A + V+++AA+L+ +Y+ R A G AF D + +SFP Sbjct: 712 NPSLSKMGGSDWAKTKSRARKAVKEIAADLVKLYSARQASRGHAFAADTPWQRELEESFP 771 Query: 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 658 + TPDQ AI+ V DM + + MDRL+ GDVGFGKTEVA+RAAF AV + KQVAVLVPT Sbjct: 772 YNETPDQLTAIHEVKEDMEKEIPMDRLISGDVGFGKTEVAVRAAFKAVQDGKQVAVLVPT 831 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 TLLAQQHY+ F +RF+ +PV+I ++SRF+ AKE QI E+A G +D++IGTH++L V Sbjct: 832 TLLAQQHYETFSERFSGFPVKIRVLSRFQKAKETRQITEEIASGAVDVVIGTHRILSDSV 891 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 FKDLGL+I+DEE RFGV HKE++K MR NVD+L ++ATPIPRTL M+++G+R+ S +AT Sbjct: 892 VFKDLGLVIIDEEQRFGVEHKEKLKQMRTNVDVLAMSATPIPRTLEMSLTGIRETSTLAT 951 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 P R V TFV + AI REI+R GQV++++N V +I A + +LVPEARI Sbjct: 952 APEERHPVLTFVGPRTDSQITAAIRREIMREGQVFFVHNRVADIDDVAAEIGKLVPEARI 1011 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 A HG+M E LE+++ DF +RF+VLVCTTI+ETG+DI ANT+I++ A ++GL+QLHQ Sbjct: 1012 ATAHGRMSESRLEQIIVDFWERRFDVLVCTTIVETGLDISNANTLIVDHAQNYGLSQLHQ 1071 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 LRGRVGR +AYA+ L P K + A +RL+A+A+ +LGAG LA DLEIRGAG L Sbjct: 1072 LRGRVGRGRERAYAYFLYPVDKTLGEIAHERLKAVATHNELGAGLQLAMKDLEIRGAGNL 1131 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIP 1018 LG EQSG + +GF LY+ L+ AV + +E +T+++L + + +P +I Sbjct: 1132 LGGEQSGHIAGVGFDLYLRLVGEAVANYRGEKE-----EREVETKIDLPVNAHIPHTYID 1186 Query: 1019 DVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 RL Y++IA+A TE ++ E + EL+DR+G LPD LL +A +R A+ GI ++ Sbjct: 1187 SERLRLQAYRQIAAADTEEKIAEAREELVDRYGELPDAVENLLAVATVRMHARAAGIHEM 1246 Query: 1079 EGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQ 1109 + A + + + L + P Sbjct: 1247 VVLGPKVRVVTA--TPLPESRQMRLKRVYPG 1275 >UniRef50_Q0B0S4 Transcription-repair coupling factor-superfamily II helicase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0B0S4_SYNWW Length = 1073 Score = 1030 bits (2664), Expect = 0.0, Method: Composition-based stats. Identities = 377/1135 (33%), Positives = 608/1135 (53%), Gaps = 82/1135 (7%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMN 69 ++ + LL L+G+A A +++EI ++ ++ + P+ + A L ++ F + Sbjct: 15 LQKRQNILLTGLSGSAKAFMLSEILKKQNRKLLCLLPEEEKAYDLARDLEAFIEPGRLFM 74 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPT--MQRGVLIVPVNTLMQRVCPHSFLHGHA 127 + ++ R+ +L Q ++I + + + S + + Sbjct: 75 FLARDFYFAKENLSTLEV--GRILSLQHCLDHPRQSAIIIATPGSFIYPLPAPSAMRESS 132 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 L++++G+ + + +L GYR VD V GE+A RG ++D+FP+G + P R++FF + Sbjct: 133 LLLQQGKEKEQREILKKLVGGGYRRVDTVSRQGEFAVRGGIIDIFPLGHKEPCRVEFFGE 192 Query: 188 EIDSLRVFDVDSQRTLEEVE-AINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQ 246 I+S+ FD++SQR L + E + +LPA E Sbjct: 193 LIESIHRFDINSQRRLGKDEGQVKILPADE------------------------------ 222 Query: 247 QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENR 306 L+ E +FSY ++ + + ++F+ E+ Sbjct: 223 ----------------LYGDELTCSIFSYLDESSSVFF-DEPREFYKQFKRSVRRYRESL 265 Query: 307 GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQ--LKTEHLPTKAANANLGFQKLPDLAVQ 364 + + L + L E++ + +P A + + Sbjct: 266 KEACKDGKIIREIKLLDSEYLKKEIEAHSVIYHAYFPSTIPQVAVTSLQHISQKEMEPFY 325 Query: 365 AQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY 424 Q + + + + V+ +++S RE + + L I G Sbjct: 326 RQYETLFARINDW-QGKGLKVILAIKSRVAREQIQQDLLEQGIT-------------GIS 371 Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 + E GF + +AL+ ESD+ G++ + + + ++ L +L +G VV Sbjct: 372 YLDKIVEKGFSSSTLQVALLSESDIWGKKTDPGSRKKHKHKGEERIL--LEDLKLGDYVV 429 Query: 485 HLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544 H +G+G + G++ +E GIT EY++L YA +LY+P+ L L+ +Y ++ L+K Sbjct: 430 HESYGIGIFRGVSQVENSGITREYILLEYAGTDRLYLPLEKLDLLFKYTSSGDKEPRLNK 489 Query: 545 LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604 LGG AW R R+K A+ ++D+A +LL +YA R ++EG+AF D F D FPF TPD Sbjct: 490 LGGSAWERTRKKVAQSIQDLAEDLLQLYAHRESREGYAFSPDTPWQSQFEDEFPFRETPD 549 Query: 605 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 664 Q +AIN V DM MDRLVCGDVG+GKTEV +RAAF A+ + KQVA+LVPTT+LA+Q Sbjct: 550 QLKAINEVKKDMETRRPMDRLVCGDVGYGKTEVFLRAAFKAIMDGKQVAILVPTTVLAEQ 609 Query: 665 HYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 724 H+ F +RFA +P IE++SRFRS EQ +I+ ++ +G +DI+I TH+LL DVKFKDLG Sbjct: 610 HFQTFTERFAAYPAVIEVLSRFRSNSEQKRIVEDLQKGVVDIVIATHRLLSRDVKFKDLG 669 Query: 725 LLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRL 784 LL++DEEHRFGV KE+IKA++ VD+++L+ATPIPR+L+MA++G+RDLS+I TPP R Sbjct: 670 LLVIDEEHRFGVAQKEKIKALKELVDVISLSATPIPRSLHMALTGLRDLSVIETPPPERY 729 Query: 785 AVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQ 844 + T+V EY+ ++ EA+++EI R GQV++++N +E+I + E+L EL P +IA+GHG+ Sbjct: 730 PITTYVLEYNEEIIVEAVMKEIERQGQVFFVHNRIEDIYRVKEQLDELFPGIKIAVGHGR 789 Query: 845 MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVG 904 M+E EL RVM DF + ++ + +CTTIIE+G+D+P NTII++ AD GLAQL+QLRGRVG Sbjct: 790 MKEDELSRVMMDFVNGKYQLFLCTTIIESGLDMPNVNTIIVDEADKMGLAQLYQLRGRVG 849 Query: 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 964 RSH AYA+L ++ +QKRL AI +LG+G +A DLEIRGAG +LG EQ Sbjct: 850 RSHRLAYAYLTYRPDWVISEASQKRLNAIREFNELGSGMKIALRDLEIRGAGNILGAEQH 909 Query: 965 GSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRL 1024 G ++ +GF LY LLE LK + ++++ + +P+ +IPD +++ Sbjct: 910 GYIQAVGFDLYCRLLEQETGRLKGEQVQENR----VDPQLDIDIDYYIPESYIPDSGSKM 965 Query: 1025 SFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKG 1084 Y+R+ A ++ E+EEI+ E+ DRFG LP L IA LR A+ I+ L + Sbjct: 966 RIYRRLLLAGSQEEVEEIREEIRDRFGPLPQAVENFLQIAALRLLARDKEIKSLRRKGRQ 1025 Query: 1085 GVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFM 1139 I+ L G L + + R L + + + + Q + Sbjct: 1026 IEIQ-------TLQRLPGNLSEHLRGIRRVNDHTLIIQKHENSSLPALAEILQML 1073 >UniRef50_B9XRJ1 Transcription-repair coupling factor n=1 Tax=bacterium Ellin514 RepID=B9XRJ1_9BACT Length = 1212 Score = 1030 bits (2663), Expect = 0.0, Method: Composition-based stats. Identities = 403/1248 (32%), Positives = 606/1248 (48%), Gaps = 175/1248 (14%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAG-PVVLIAPDMQNALRLHDEIS 60 P ++ G L ++ +A L A + + P+VL++ ++ ++ Sbjct: 14 PAVQSLLRRLENGGVLSLNGISASAQPFLAALLRQLLPELPIVLVSDSLKTQESFQQDVE 73 Query: 61 QFT---------------------DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLP 99 + + WE +P++S PH D+IS RL TL L Sbjct: 74 TWLNFEGSQQKSKGKAPASQPSTISDRPLFYPAWEVMPHESKLPHADVISERLETLVALA 133 Query: 100 TMQRGV------LIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHV 153 G +I V L+Q+ P S L ++ +G R+ L L+ GY Sbjct: 134 RQSPGKRGAAPHIIANVTALLQKTFPASVLKERTRMLNRGDRVEPLDLIEWLEEQGYEPE 193 Query: 154 DQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLP 213 QV + GE A RG +LD++PM S P RL+FF DE++SLR FD +Q + E++ + L P Sbjct: 194 AQVTQKGEIALRGGILDVYPMTSPWPVRLEFFGDELESLRYFDPITQISREQIATVTLPP 253 Query: 214 AHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273 EF I +Q++ A L L Sbjct: 254 GGEFG-------------------------ILKQLAARDQQA------------SLATLL 276 Query: 274 SYFPANTLLV--NTGDLETSAERFQADT---------LARFENRGVDPMRPLLPPQSLWL 322 Y P TL + +E E++ + F+ + L + + Sbjct: 277 DYLPTGTLFILSEPERIEEHTEQYSTQVPNEDPFHIPWSDFQELLSEKGMKSLQLSEIVM 336 Query: 323 RVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQA-----------QQKAPL 371 + ++ + + E ++ +L F L Q++ Sbjct: 337 DGESEGMDVLSESEAVAEDERPFGESTENSLPFSSLEAFRPLGARAPEPQIAEAQRREFF 396 Query: 372 DALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAE 431 L ++ V ++G R+ E+ D G + +GA Sbjct: 397 AQLHRWSRQ-GYDVHLFCNNDGERQRFQEVWKDYGFG----------EDFGLKMHLGALG 445 Query: 432 HGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIR---NLAELHIGQPVVHLEH 488 GF++ + ++ ++++ G +R + + T + EL G VVHL+H Sbjct: 446 RGFLNEEAKVVVVTDAEIFGRYKVQRPRRLKSPHAQATRSALDIDFTELEEGDYVVHLQH 505 Query: 489 GVGRYAGMTTLEA-------------GGITGEYLMLTYANDA------KLYVPVSSLHLI 529 G+GRY G+ L E L++ YA KLYVPV+ HL+ Sbjct: 506 GIGRYQGLKVLPVTLGRKGVDPNATPADSGQECLVIEYAASDPQQPAPKLYVPVTEAHLV 565 Query: 530 SRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQ 589 S+Y G + L+ +GG W++A+ +A VRDVA+ELL I A R ++ G++FK D Sbjct: 566 SKYVGAGKARPQLNTIGGTRWAKAKAQAERAVRDVASELLAIQAARESQPGYSFKADTPW 625 Query: 590 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH 649 + F +F +E T DQ +AIN DM +P MDRL+CGDVGFGKTEVA+RAAF AV Sbjct: 626 QREFESAFLYEETRDQMRAINETKGDMERPKPMDRLICGDVGFGKTEVAIRAAFKAVMEG 685 Query: 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIG 709 KQVA+LVPTT+LAQQHY+ F++R A++P+R+E++SRFRS K + ++++E+ G +DI+IG Sbjct: 686 KQVAILVPTTVLAQQHYNTFKERVADYPMRVELLSRFRSPKNRKRVISELPAGAVDIVIG 745 Query: 710 THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSG 769 TH+L+QSD+ FKDLGL+I+DEE RFGV HKE+ K +R VD+LTL+ATPIPRTL +A++G Sbjct: 746 THRLIQSDINFKDLGLVIIDEEQRFGVLHKEKFKQIRKLVDVLTLSATPIPRTLYLALTG 805 Query: 770 MRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 RD+S I TPP RL V+T V +YD ++REAI RE+ RGGQVY+L+N V I A++L Sbjct: 806 ARDMSTIETPPQDRLPVETIVAQYDERLIREAIQRELNRGGQVYFLHNRVGTIDAMAQKL 865 Query: 830 AELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 LVP ARI +GHGQM+ +LE VM F + +VL+ TTIIE+G+DIP ANT+II+RAD Sbjct: 866 RTLVPHARIVVGHGQMKPDDLEEVMTAFINGEADVLLSTTIIESGLDIPNANTMIIDRAD 925 Query: 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHD 949 FGL+ L+QLRGRVGR HQAYA+LL P + DA+KR+ A+ LG+GF +A D Sbjct: 926 RFGLSDLYQLRGRVGRYKHQAYAYLLLPRHAGLLADARKRISALKQYSTLGSGFKIAMRD 985 Query: 950 LEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGR------------------- 990 LEIRGAG +LG EQSG + +GF LY +LL+ +V ALK + Sbjct: 986 LEIRGAGNMLGPEQSGQITAVGFDLYCQLLKQSVAALKGEKVKPRVEVQVRFDFLALNPG 1045 Query: 991 ----------EPSLEDLTSQQTEVELR-------------------------MPSLLPDD 1015 + + E+ + + +P Sbjct: 1046 EESAAPERGAKAEAPKRRKAEPEIIIPREVLTYVEYDEVAEQKTEQPMQVEKGSAFIPLS 1105 Query: 1016 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 ++ + R+ Y+++A A + LE + EL DRFG LP LL + L+ A + I Sbjct: 1106 YVSEAKQRIDIYRKLAQATDKAALENLAKELRDRFGTLPPAMELLLQVGELKILAGEKNI 1165 Query: 1076 RKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQ 1123 +E + ++ + L + + RL +L Sbjct: 1166 TIIEVKDDKLMLTRNNDYIMLGGKFPRLTKGDAKG-RLKEIKKLLLAL 1212 >UniRef50_Q1RI82 Transcription-repair-coupling factor n=16 Tax=Rickettsia RepID=MFD_RICBR Length = 1120 Score = 1028 bits (2658), Expect = 0.0, Method: Composition-based stats. Identities = 355/1136 (31%), Positives = 596/1136 (52%), Gaps = 37/1136 (3%) Query: 23 TGAACATL-VAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMNLADWETLPYDS 80 AA + + + VL+ + + AL+L+ + F + + ++T+PYD Sbjct: 7 PQAAKSFFTIDSFIKNSKQDFVLVTSNEEEALQLYKQALFFLPSENIYYFPSYDTIPYDH 66 Query: 81 FSPHQDIISSRLSTLYQLPTMQ-RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRD 139 SP+ +I+S R TL +L T + ++I L+ ++ P F + L + +LS + Sbjct: 67 TSPNCNILSKRAETLSKLTTNKGNKLVITHATNLLNKLPPKDFFAKYYLKLFPKMKLSAN 126 Query: 140 ALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDS 199 L L + ++ GE+A RG ++DL S+ YR++F D ++S++ FD+D+ Sbjct: 127 ELSKFLVENSFTRNASTVDVGEFAVRGEIVDLILPESKG-YRINFSWDYVESIKQFDIDT 185 Query: 200 QRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEY 259 Q + + + PA+E + I F+ + F V +Y+ ++ G +G E Sbjct: 186 QISTRSCNELIISPANEIVLNPETISNFKDNYLRNFGVNHTDNPLYEAITGGRKFSGYEQ 245 Query: 260 WQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDP------MRP 313 PLF+ + L Y N +++ + + F+ ++ R P Sbjct: 246 LLPLFY-DSYSGLTDYL-NNPVIIFDNLTKQAILEFEHSYNDFYKARLDANKLKFNSFYP 303 Query: 314 LLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDA 373 L P L+ E L+ + + E+ + N+ A ++K D Sbjct: 304 TLSPSQLYFTSLEAIELLEQENNILISYENSEQASIVENI------AAASFVEKKTIFDK 357 Query: 374 LRKFLE-TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEH 432 L + ++ ++ E + ++ + + I L+EA + I Sbjct: 358 LFEVIKANSRKKIIIGSSVLSSFERVKSIIENYEYSYNEIEYLEEAKTNTINIAILPLNQ 417 Query: 433 GFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGR 492 F I S+LL E+V + + ++ L L G+ +VH +HG+G+ Sbjct: 418 SFSTPE--YLFIAASELLEEKVTPTNTNKKLK----NILLELDHLAEGELIVHKDHGIGQ 471 Query: 493 YAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSR 552 + + LE G ++L + YA + KLY+PV ++ +I +Y + A L KLG +W + Sbjct: 472 FLKLEALEIKGKLHDFLKILYAGNDKLYIPVENIEVIKKYGS---DVAQLDKLGSVSWQK 528 Query: 553 ARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAV 612 + K +++++A L+ I A+R A + D E+Y FC FPF T DQ AIN + Sbjct: 529 NKAKLKNRIKEIALHLMQIAAKRKLNTTAAIEFDLEEYDKFCAKFPFTETEDQLNAINDI 588 Query: 613 LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV----DNHKQVAVLVPTTLLAQQHYDN 668 D+ + MDRL+CGDVGFGKTEVAMRAAF+ +N QVAV+VPTT+L QH+ Sbjct: 589 REDLSNGMLMDRLICGDVGFGKTEVAMRAAFMVAKSLNENSPQVAVVVPTTILCSQHFAR 648 Query: 669 FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 728 F +RF + + I+ +S S+KE + +E+ GKI+I+IGTH LL KF +L LLI+ Sbjct: 649 FTERFKDSDLNIKQLSSVVSSKEAKIVRSELESGKINIIIGTHSLLHKVTKFCNLKLLII 708 Query: 729 DEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 788 DEE FGV KE +K+++++ +L ++ATPIPRTL M+M+G+++LSIIATPP RL V+T Sbjct: 709 DEEQHFGVGQKEFLKSLKSSTHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRT 768 Query: 789 FVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 848 V +D +++R+A+L E RGG+ +++ + +I+ ++L ++VPE + HG+M Sbjct: 769 SVMPFDPVIIRDALLHEHFRGGKSFFVVPRINDIEDIEKQLKQIVPELSYKVAHGKMSPN 828 Query: 849 ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908 +++ +M++F+ +F++L+ TTIIE+GIDI ANT+II +AD GL+QL+QLRGR+GR Sbjct: 829 KIDEIMSEFYAGKFDILISTTIIESGIDIQDANTMIIHKADMLGLSQLYQLRGRIGRGKM 888 Query: 909 QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSME 968 + YA+L P K MT + +RLE I + LG+GF +A+HD+++RG G L+GEEQSG + Sbjct: 889 RGYAYLTLPSHKKMTPHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGEEQSGQIR 948 Query: 969 TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1028 +G LY E+LE + K + + L + +PD+++ D +L Y+ Sbjct: 949 EVGTELYQEMLEEQIAIFKDEPISGEQPFI---PTINLGLSVFIPDNYVSDSVLKLGLYR 1005 Query: 1029 RIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088 RI + + E+E+ K E+IDRFG LP LLDI +++ KL I L+ + G VI+ Sbjct: 1006 RIGNLNDDLEVEKFKDEMIDRFGSLPTEFNNLLDIVKIKLLCFKLNIENLDSGDNGFVIK 1065 Query: 1089 FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 F + + ++ + + ++ +L FI+ L KT I Q + L E Sbjct: 1066 FYKNADM-ADKILKFVSTYTANAKIKPDNKLVFIKKL-VGKTIITEANQLLWNLSE 1119 >UniRef50_A9WU24 Transcription-repair coupling factor n=68 Tax=Actinobacteria (class) RepID=A9WU24_RENSM Length = 1278 Score = 1027 bits (2656), Expect = 0.0, Method: Composition-based stats. Identities = 400/1168 (34%), Positives = 599/1168 (51%), Gaps = 61/1168 (5%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDS 80 L A A+ HAG V+ + + + L + + + V + WETLP++ Sbjct: 118 LAEVAEGLAAAQANGDHAGVVLAVTATSRESEDLVAALRAYLPEDAVADFPSWETLPHEL 177 Query: 81 FSPHQDIISSRLSTLYQLPTMQRG------VLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 SP D + RLS L +L G +++ PV ++Q + + + GQ Sbjct: 178 LSPRSDTVGRRLSVLRRLKHGGMGTTGPLRIVVAPVRAVVQPIV-QGLADLEPVELSIGQ 236 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 194 R D + +L A Y VD V GE+A RG ++D+FP P R++FF DE++S+R Sbjct: 237 RAPFDQVIRRLADAAYARVDMVTHRGEFAVRGGIIDVFPPTDPHPVRIEFFGDELESMRW 296 Query: 195 FDVDSQRTLEEVEAINLLP-------AHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 247 F V QRTL + P E ++ +D+F + ++ Sbjct: 297 FAVADQRTLTSISGTIEHPKALFAPPCRELLITPEVQSKA-AKLKDSF---PAAAAMLEK 352 Query: 248 VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPAN--TLLVNTGDLETSA---ERFQADTLAR 302 ++ G G+E P+ + + P+ + FP +++ + A E + L Sbjct: 353 IAGGIAVEGMESLTPVLV-DSMVPVVAEFPPGSIAVVLEPERVRGRAHDLEATNEEFLEA 411 Query: 303 FENRGVDPMRPLLPPQSLWLRVD----------ELFSELKNWPRVQLKTEHLPTKAANAN 352 + D L L + + W L + T Sbjct: 412 AWSTASDGGAAPLDVSQTLASASFASLAQTRGAALRAGVSWWSVSALGIDD-ETAPELDV 470 Query: 353 LGFQKLPDLAVQAQQKAPLDALRKFLETFD----GPVVFSVESEGRREALGELLARIKIA 408 L Q L+ + + D VV + + G + L EL I Sbjct: 471 LSVPAREPRGYQGNVAEMLEFIGSRVRGNDGGGQWRVVVATDGPGPAQRLAELFHDADIP 530 Query: 409 PQRIMRLDEASDRGR-YLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINP 467 R+ LDE G + A HGFV + L+ E+DLLG A +D R+ + Sbjct: 531 TARVDSLDEQPQLGIIEVTTAAVGHGFVLDGLKIGLLTEADLLGRSSASGTKDMRKMPSK 590 Query: 468 DTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGI--TGEYLMLTYAN------DAKL 519 + +L G VVH +HG+GR+ + + G + EYL+L YA +L Sbjct: 591 RRNAVDPLQLRGGDFVVHEQHGIGRFLELIQRKVAGTDGSREYLVLEYAPSKRGAPGDRL 650 Query: 520 YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 +VP L I+ Y G + L K+GG W+ + KA + V+++A EL+ +Y+ R A Sbjct: 651 FVPTDQLDQITAYVG--GDAPALSKMGGSDWASTKNKARKAVKEIAGELIRLYSARMASR 708 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 GF+F D + ++FP+ TPDQ IN V +DM + + MDRLV GDVG+GKTE+A+ Sbjct: 709 GFSFSADTPWQRELEEAFPYVETPDQLTTINEVKADMEREIPMDRLVSGDVGYGKTEIAV 768 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 RAAF AV + KQVAVLVPTTLLAQQHY+ F +RF+ +PVR++ +SRF+S KE + V Sbjct: 769 RAAFKAVQDGKQVAVLVPTTLLAQQHYETFSERFSGFPVRVKPLSRFQSGKEAKETAEGV 828 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 A G ID++IGTH+LL D FKDLGL+IVDEE RFGV HKE++K MR NVD+L ++ATPI Sbjct: 829 ANGSIDVVIGTHRLLSKDFAFKDLGLVIVDEEQRFGVEHKEQLKKMRNNVDVLAMSATPI 888 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTL M+++G+R+ S +ATPP R V T+V Y AI RE++R GQV++++N V Sbjct: 889 PRTLEMSLTGIRETSTLATPPEERHPVLTYVGPYTDKQASAAIRRELMREGQVFFVHNRV 948 Query: 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 +I++ A + +LVPEARIA+ HGQM E LE+++ DF +RF+VLVCTTIIETG+DI Sbjct: 949 SSIERIAAHVQQLVPEARIAVAHGQMSESRLEQIIVDFWEKRFDVLVCTTIIETGLDISN 1008 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 ANT+I++ AD +GL+QLHQLRGRVGR +AYA+ L P K + A +RL+A+A+ +L Sbjct: 1009 ANTLIVDGADKYGLSQLHQLRGRVGRGRERAYAYFLYPAEKPLGEVALERLKAVAAHNEL 1068 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 GAG LA DLEIRGAG LLG EQSG + +GF LY+ L+ AV + E + Sbjct: 1069 GAGMQLALKDLEIRGAGNLLGGEQSGHIAGVGFDLYIRLVGEAVADYRGETE-----DKA 1123 Query: 1000 QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPART 1059 ++EL + + LP D++P RL Y+++A+A + ++E+ EL+DR+G P Sbjct: 1124 ADMKIELPVNAHLPHDYVPGERLRLEAYRKLAAAASNAAIDEVLEELVDRYGEPPAAVVN 1183 Query: 1060 LLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIG-----LLQKQPQHYRLD 1114 L+ + R R A+++G+ + A+ L L++ + Sbjct: 1184 LIAVDRFRVAAREVGLTDVAVQGNFVKFFPADLPESRQMRLQRMYPGSLIKPALHQILVP 1243 Query: 1115 GPTRLKFIQDLSERKTRIEWVRQFMREL 1142 P + +EW Q + + Sbjct: 1244 RPKTARIGGRDLVDAQVLEWAEQVLTAI 1271 >UniRef50_Q7UQN7 Transcription-repair coupling factor n=1 Tax=Rhodopirellula baltica RepID=Q7UQN7_RHOBA Length = 1181 Score = 1027 bits (2655), Expect = 0.0, Method: Composition-based stats. Identities = 377/1138 (33%), Positives = 589/1138 (51%), Gaps = 87/1138 (7%) Query: 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75 + G L A + H V+++ P +A + ++S F + V+ L Sbjct: 114 SLAFSGVWGGIRGLLAAALTRHHPH-VLVLLPQAVDADIVAGDVSSFGIEDVVALPLSAG 172 Query: 76 LPYDSFSPHQDIISSRLSTLYQL----PTMQRGVLIVP-VNTLMQRVCPHSFLHGHALVM 130 S D ++RL L +L + +++ + +QRV + L + Sbjct: 173 DGTGSSIRDADY-AARLQVLQRLRARDQHSPKPLVVTSYIGAAIQRVPSVTSLEKATREL 231 Query: 131 KKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEID 190 G + + +R L AG+ V V GE+A+RG LLD++ P R+++FDDEI+ Sbjct: 232 AVGDIVDPEVIRRWLAEAGFAAVTAVQVPGEFASRGGLLDVYSPDQPQPIRIEWFDDEIE 291 Query: 191 SLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSK 250 S+R FD +QR+ E + + L P + F + + + V Sbjct: 292 SIRRFDAATQRSSETLSKVELAAIGTQPV------------KSPFAEEENNDEPLDLVVD 339 Query: 251 GTLPAGIEYWQPLFFSEPLPPLFSYFPANTLL--VNTGDLETSAERFQADTLARFENRGV 308 T+ A + Y P +T++ ++ D S+ A Sbjct: 340 DTVGA-------------EATIVDYLPEDTVVLVIDPSDCHQSSNALLA----------- 375 Query: 309 DPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQK 368 + ++ + EL SELK+ V + + +L A Sbjct: 376 -----RVAKTERFVSMRELLSELKSHKVVTGTSLAEGAPSDVVDLHTASADSFATS---- 426 Query: 369 APLDALRKFLE--TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLM 426 LD + ++ V+ ++ + L ELL D A ++ Sbjct: 427 --LDETKSKVDSVAAGHEVIVVGDTPADGQRLTELLED----------TDAAKQGRLHMT 474 Query: 427 IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHL 486 + GF T + ++ ++L R +T I + +L G V+HL Sbjct: 475 VADLSGGFRLTDAEILVLTGAELF----HRSPVRRAKTRTRGKPIDSFTQLTPGDLVIHL 530 Query: 487 EHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLG 546 HG+G Y G+ ++E G E+L + + K++VP S + L+ RY GG + L K+G Sbjct: 531 SHGIGLYRGLNSIEKNGQHQEHLTIEFDGGTKIHVPASRIQLVQRYVGGTKNRPKLAKIG 590 Query: 547 GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606 G +W+ ++ A V D+A ELL++ A+RA + G D E + F SFP+ TPDQ Sbjct: 591 GISWTNQKKAAEAAVTDMADELLELQAKRATRLGIPMSPDNEWQRQFDASFPYLETPDQL 650 Query: 607 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 666 AI A+ DM P MDRL+CGDVGFGKTEVAMRAAF AV + QVAVLVPTT+LA+QHY Sbjct: 651 SAIEALKIDMEAPRPMDRLICGDVGFGKTEVAMRAAFKAVSSGYQVAVLVPTTVLAEQHY 710 Query: 667 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 +FR+R A +PV I +SRF + EQ + + E+ GK DI+IGTH++ DV+F +LGL+ Sbjct: 711 QSFRERMAEFPVEIRKLSRFCTPAEQRETVKEIRRGKADIVIGTHRVASKDVEFNNLGLV 770 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 ++DEE RFGV KER+K +NVD+LTL+ATPIPRTL+MA+ G+RD+S + TPPA R+AV Sbjct: 771 VIDEEQRFGVAVKERLKTQHSNVDVLTLSATPIPRTLHMALVGVRDISNLETPPAERMAV 830 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 +T V +D ++R AI+RE+ RGGQ+Y+++N + ++ A R+ +VPE RI IGHGQM Sbjct: 831 ETKVTRWDDKMLRSAIVRELNRGGQMYFVHNRIGDMDDLAARIKAIVPELRIGIGHGQME 890 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 E LE+VM DF +F++L+ TTIIE+G+DIP ANT+ I+ + +GL+ LHQLRGRVGR Sbjct: 891 EGALEQVMVDFIDHKFDMLLATTIIESGLDIPNANTMFIDDGNRYGLSDLHQLRGRVGRY 950 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 HQAY +LL K +T +A KRL AI +GAGFA++ DLEIRGAG LLG +QSG Sbjct: 951 KHQAYCYLLVSPNKRLTPEASKRLRAIEEYSQMGAGFAISMRDLEIRGAGNLLGSQQSGH 1010 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026 + +G+ +Y +LLE+AV + L S +++L + + LP+D++P++ ++ Sbjct: 1011 IAAVGYEMYCQLLEDAVRQAQK-----LPPKLSADVDIDLPIEAYLPEDYVPNLRHKIDL 1065 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGV 1086 Y+R+ + +++ I+ EL DRFG P PA +L++ LR A G+ L N++ V Sbjct: 1066 YRRMTRIEKAADVKAIREELEDRFGSPPPPAIRMLELCELRLDAASWGLVSLTTNDRFIV 1125 Query: 1087 IEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD-----LSERKTRIEWVRQFM 1139 ++++ ++ +N L + R+ + K ++ R + Sbjct: 1126 LQYSNRSRMN-----QLAKNSSIPIRIVDHEKAYIPIKDYDMSDPAGKAWLQLARAAL 1178 >UniRef50_C9LLX5 Transcription-repair coupling factor n=1 Tax=Dialister invisus DSM 15470 RepID=C9LLX5_9FIRM Length = 1135 Score = 1024 bits (2647), Expect = 0.0, Method: Composition-based stats. Identities = 353/1135 (31%), Positives = 578/1135 (50%), Gaps = 71/1135 (6%) Query: 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF-TDQMVMNLAD 72 + ++ + A L A +A + P+++I P ++ R ++ F TD + Sbjct: 59 ADPIMISGAGDSQKALLTA-MAAKEDSPLIIIVPSQKDVFRWEMDLRFFATDLHLYYFPL 117 Query: 73 WETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKK 132 E + + + R+ L L +R +I V Q++ S + + + + Sbjct: 118 VEETGFKVTFSGTERLRDRMRGLASLLDGRRSAVIATVVEAAQKIISPSGILENLMTIHM 177 Query: 133 GQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 G+ + R+ L +L GY VDQV G ++ RG ++D+F + P+R++FFDDE+D + Sbjct: 178 GEVIEREILVGKLVKLGYERVDQVERCGHFSVRGDIVDIFAINESHPFRVEFFDDEVDGI 237 Query: 193 RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGT 252 RVF+ D+QR+++ + I++LPA Sbjct: 238 RVFNEDTQRSIDIRDDISILPA-------------------------------------- 259 Query: 253 LPAGIEYWQPLFFSEPLPPLFSYFPANTLLVN-TGDLETSAERFQADTLARFENRGVDPM 311 + E + SY + + + E +++ + E Sbjct: 260 ----------VIRGECSSSILSYLNSGRIFYDEPQRCEEELKKYFHEEAENKEKAFDWAG 309 Query: 312 RPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPL 371 R E+ K + T + Q Q Sbjct: 310 LVKTGRSGRKYRNREILFSFLKRDADLFKVKETATWKG--------RTMVNYQRQISLFF 361 Query: 372 DALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAE 431 + L + L+ V R+ L + L+ + + L G Sbjct: 362 NDLTRLLKE-GWSAVILTPRRSERKELEQYLSDYHVPVS-----QKVQKGKVTLYNGVLS 415 Query: 432 HGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVG 491 GF +A I D+ G++ ARR + IR ++L G VV HG+G Sbjct: 416 GGFELPDAKMAFITAGDIFGKQKARRY----KAGGKGKQIRYFSDLEPGDYVVQRVHGIG 471 Query: 492 RYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWS 551 +Y G+ T+E G+ +Y+ + YA KLY+P+ + + +Y G + LH++GG W Sbjct: 472 KYIGVKTIELEGVHRDYITIQYAGADKLYLPMEQIASLEKYIGPEGQTPALHRMGGVQWD 531 Query: 552 RARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINA 611 + R+KA + + ++A +LL +YA R EG +F D + + F D+FPF T DQ +AI A Sbjct: 532 KVRRKAKKSIEELAEKLLAVYADREITEGISFLPDTAEQREFEDTFPFVETDDQLEAIQA 591 Query: 612 VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRD 671 V M +P MD L+CGDVGFGKTEVAMRA F V + Q VL PTT+L+ QHY F+ Sbjct: 592 VKRGMERPQPMDMLICGDVGFGKTEVAMRAVFKCVMSGFQAMVLCPTTVLSSQHYKTFKG 651 Query: 672 RFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEE 731 R ++ + I +++RF + +E+ +IL+++A G++D++IGTH +L ++ + LGLL+VDEE Sbjct: 652 RMDSFGINIALLNRFTTMREKKEILSKLASGEMDVVIGTHAVLSKKIECRHLGLLVVDEE 711 Query: 732 HRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVR 791 RFGV KE+ K+ +DILTL+ATPIPRTL+M+++G+RD+ + PPA R A++T+V Sbjct: 712 QRFGVMQKEKWKSWSKKLDILTLSATPIPRTLHMSLTGVRDMVAMTQPPANRHAIQTYVT 771 Query: 792 EYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP-EARIAIGHGQMREREL 850 EYD +V++AIL E RGGQ Y++YN +E+I+ L +++P + IA+ +GQM R L Sbjct: 772 EYDDTIVKDAILHEKARGGQTYFIYNRIESIRAMEAHLRDILPSDVTIAVAYGQMDGRTL 831 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 E++M DF ++++VL+CTTIIE G+D P ANT+++ AD GL+Q++Q+RGRVGRS A Sbjct: 832 EKIMVDFFEKKYDVLLCTTIIENGVDQPNANTMLVYDADKLGLSQIYQMRGRVGRSEKIA 891 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 AW K ++ A+KRL I +LG+GF +A DLEIRGAG LLG EQ G++ + Sbjct: 892 RAWFFYRQGKVLSEAAEKRLNTIREFTELGSGFKIAMRDLEIRGAGNLLGAEQHGNIAGV 951 Query: 971 GFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI 1030 GF+ Y +LE+ V L+A RE T VELR + L +D+I + ++ Y+R+ Sbjct: 952 GFATYCNMLEDTVSRLRAERENKPVPKKMPDTTVELRQDAYLDEDYISNEGQKMEIYRRL 1011 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFA 1090 A A +E EL ++ E+IDRFG PA L ++R+R QA++LGI + + +I +A Sbjct: 1012 AVAASEEELTDLIDEVIDRFGSPSRPAERLFLVSRIRVQARRLGIGSILDEGQTLLIVWA 1071 Query: 1091 EKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERK-TRIEWVRQFMRELEE 1144 ++ ++ + L + + ++ + +W+ F+ E+ + Sbjct: 1072 DEEPMHRWNMNRLPHSYMSKLHFLPGSPARVRIKKTDIQGNTAKWMSDFIEEITK 1126 >UniRef50_C7MC76 Transcription-repair coupling factor Mfd n=9 Tax=Actinobacteridae RepID=C7MC76_BRAFD Length = 1211 Score = 1023 bits (2645), Expect = 0.0, Method: Composition-based stats. Identities = 406/1167 (34%), Positives = 599/1167 (51%), Gaps = 51/1167 (4%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERH--AGPVVLIAPDMQNALRLHDEISQFTD-QMVM 68 ++GE + TG LVA++A R P+V++ + L +S + ++ Sbjct: 42 ESGEGGSIVAATG-LFPFLVADLARRATAEQPLVIVTATTRATEDLRAALSALVGTEHLV 100 Query: 69 NLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQR----GVLIVPVNTLMQRVCPHSFLH 124 L WETLP++ SP D ++ RLSTL ++ + V+++PV +L+Q + Sbjct: 101 ELPAWETLPHERLSPRADTVAKRLSTLRRIAHPESEDPAHVVLMPVRSLLQPI-AKGLGE 159 Query: 125 GHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDF 184 + G + L L A Y VD V + GE+A RG +LD+FP P R+D Sbjct: 160 LRPVRAAVGDTYPLEDLERDLTGAAYARVDMVEKRGEFAVRGGILDVFPPTEPHPVRVDL 219 Query: 185 FDDEIDSLRVFDVDSQRTLEEVEA-INLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEH 243 F DEID +R F V QR+L+ ++ P E A R + R E Sbjct: 220 FGDEIDDVRYFSVADQRSLDPAPRGLDAPPCREILLTPA----VRERARARAEELPGVRD 275 Query: 244 IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT--LLVNTGDLETSAERFQADTLA 301 + +++ G G+E P+ + + + PA L+++ A+ A T Sbjct: 276 LLLRIADGIAADGMESLSPVLV-DGMEQVADVLPAGARFLVIDPEKARARADELVATTDE 334 Query: 302 RFENRGVDPMRPLLPPQSL------WLRVDELFSELKNWPRVQLKTEHLPTKAANANLGF 355 P + L + + P L L T + +L Sbjct: 335 FLAAAWSSAAAGGGLPIDVGAASFVPLSEAKGHAREGGRPWFTLAAFGLDT---DVDLTT 391 Query: 356 QKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRL 415 + L + V+ ++ G + E L + L Sbjct: 392 SSTTHPGYSGKPGDAAKDLERR-RAEGWSVLSTMVGPGGARHVAENLRAEGLPAVFSAEL 450 Query: 416 DEAS-DRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNL 474 D + +G G VD L L E DL G+ ARR ++ + ++ L Sbjct: 451 DAPVAPGEAVVTVGPFAEGLVDEDLQLILAAERDLTGKSGARRGEERKMPSRRRNVVDPL 510 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAGG----ITGEYLMLTYAN------DAKLYVPVS 524 +L G VVH HGVGR+ MT G T EYL++ YA +LYVP Sbjct: 511 -QLRPGDHVVHAHHGVGRFVEMTRRAVGSGAKRTTREYLVIEYAPSKKGQPGDRLYVPSD 569 Query: 525 SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 L +++Y G E ++++GG W++ + KA + +R++A EL+ +Y+ R + G AF Sbjct: 570 QLDQVTKYVG--GEEPSVNRMGGADWAKTKSKARKAIREIADELVRLYSARQSAPGHAFG 627 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 D + DSF F TPDQ I+ V +DM + + MDRL+ GDVG+GKTE+A+RAAF Sbjct: 628 PDTPWQRELEDSFEFVETPDQLVTIDDVKADMEKSVPMDRLILGDVGYGKTEIAVRAAFK 687 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 AV + KQVAVL PTTLLAQQH D F +R+ +PV + +SRF++ + + + +G + Sbjct: 688 AVQDGKQVAVLAPTTLLAQQHLDTFAERYTGFPVTVRGLSRFQNPADSEATVEGLRDGSV 747 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 DI+IGTH+LL +V+FKDLGLLIVDEE RFGV HKE +KA+R NVD+L+++ATPIPRTL Sbjct: 748 DIVIGTHRLLTGNVRFKDLGLLIVDEEQRFGVEHKETLKALRTNVDVLSMSATPIPRTLE 807 Query: 765 MAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQK 824 MA++G+R+LSI+ATPP R V T+V + V AI RE+LR GQV+Y++N VE+I + Sbjct: 808 MAVTGIRELSILATPPEERHPVLTYVGAQEDKQVTAAIRRELLREGQVFYIHNRVEDIDR 867 Query: 825 AAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 A L ELVP+AR+ + HG+M E +LERV+ DF + F+VLVCTTI+ETG+DI ANT+I Sbjct: 868 VAAHLRELVPDARVQVAHGKMNEHQLERVLIDFWERDFDVLVCTTIVETGLDISNANTLI 927 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 +E AD FGL+QLHQLRGRVGRS +AYA+ L K +T A RL +A+ DLGAG Sbjct: 928 VENADRFGLSQLHQLRGRVGRSSERAYAYFLYNATKPLTELAHDRLTTLATNTDLGAGMQ 987 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEV 1004 +A DLEIRGAG LLG EQSG + +GF LY+ ++ AV A + ++ V Sbjct: 988 VAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRMVGEAVAAFRGEGR-----APEKEIRV 1042 Query: 1005 ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIA 1064 EL + + +P D+I RL Y ++++ + +E+ +I+ EL DR+G P P LLD+A Sbjct: 1043 ELPLDAHVPHDYIGSERLRLEAYSKLSAVREVSEIAQIRAELTDRYGTPPAPVEVLLDVA 1102 Query: 1065 RLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGL-----LQKQPQHYRLDGPTRL 1119 R R A+ GI +++ K E + L L+ + + P Sbjct: 1103 RFRIDARTAGIDEVQAQGKMIRFAHLEVPDSAAMRMKRLYPGTVLKPAIRQVLVPRPMTS 1162 Query: 1120 KFIQDLSERKTRIEWVRQFMRELEENA 1146 + +EW R +R L A Sbjct: 1163 RLGGTELRDHELLEWSRDVLRTLVPAA 1189 >UniRef50_Q3AK28 Transcription-repair coupling factor n=6 Tax=Cyanobacteria RepID=Q3AK28_SYNSC Length = 1192 Score = 1022 bits (2644), Expect = 0.0, Method: Composition-based stats. Identities = 373/1149 (32%), Positives = 589/1149 (51%), Gaps = 33/1149 (2%) Query: 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLAD 72 ++ L+ + A + + +A+R P++++ P ++ A R + Sbjct: 25 RAQRLLMRGAGRCSRALVASALAQRRGAPLLVVVPTLEEAGRWTALLELMGWSQAGLYPT 84 Query: 73 WETLPYDSFSPHQDIISSRLSTLYQLPTMQRGV---LIVPVNTLMQRVCPHSFLHGHALV 129 E PY+ F P +I +L L L + ++ L + P L Sbjct: 85 SEGSPYEPFDPTSEITWGQLQVLSDLLGDPDALSWAIVATERCLQPHLPPPDVLKTKTRT 144 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 ++KG ++ +AL L GY V+ + + G ++ RG ++D+FP+ SELP RL+FF +E+ Sbjct: 145 LRKGDQVDLEALGETLAQLGYERVNTIEQEGSWSRRGDIVDIFPVSSELPVRLEFFGEEL 204 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVS 249 D LR FD SQR+L+ V+A+ L P P + + +Q+ Sbjct: 205 DKLREFDPASQRSLDPVDALRLTPTGFGPLIADQLRETMPDGLEPLLGAEGT----EQLL 260 Query: 250 KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLE--TSAERFQADTLARF---- 303 G P G+ L + +P L Y P T +V + +++ + Sbjct: 261 NGGTPEGMRRLMGLAWGQP-ASLLDYLPDTTTVVIDERRQGLAHGQQWLSHVEEHHHDMA 319 Query: 304 -ENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLA 362 E + R L P L ++ ++ + + + E L + P A Sbjct: 320 AEAGLDEGDRDRLWPAVLHREIEAAYALTEVFHGFDM-AELLEVDQHPNSFDLASRPVAA 378 Query: 363 VQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGE-----LLARIKIAPQRIMRLDE 417 Q + ++ F + S + L E I RL E Sbjct: 379 YPNQFGKLGELIKGFQTERTAVWLVSAQPSRAVALLEEHDCISRFVPNAGDSNAISRLIE 438 Query: 418 ASDRGRYLMIGAAE-HGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAE 476 + + G AE G +AL+ + + G++ RR + + + Sbjct: 439 QNTPVALKVRGTAELEGLQLPAWRIALVTDREFFGQQSLSSSGYVRRRRKAASRTVDPNK 498 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 + G VVH HG+GR+ M L G +YL++ YA+ L V L + RY + Sbjct: 499 MRPGDFVVHRNHGIGRFKAMEKLAMSGDIRDYLVVQYADG-ILRVAADQLGSLGRYRATS 557 Query: 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596 E L+++GG AW++A+++A + VR VA +L+ +YA+R GFAF D +S Sbjct: 558 ETPPQLNRMGGTAWNKAKERAKKAVRKVALDLVKLYAERQQAAGFAFPTDGPWQVEMEES 617 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 FP++ TPDQ +A V DM + MDRLVCGDVGFGKTEVA+RA F A+ KQVA+L Sbjct: 618 FPYDPTPDQLKATADVKRDMERQEPMDRLVCGDVGFGKTEVAIRAIFKAITAGKQVAMLA 677 Query: 657 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS 716 PTT+LAQQH+ +RFA +P+++ +++RFR+A E+ IL + +G ID ++GTH+LL Sbjct: 678 PTTVLAQQHWRTLSERFAPYPIKVALLNRFRTASERKSILDGLKQGTIDAVVGTHQLLSK 737 Query: 717 DVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 776 F++LGLL+VDEE RFGV KE+IK +R +VD+LTL+ATPIPRTL M++SG+R++S+I Sbjct: 738 GASFQELGLLVVDEEQRFGVNQKEKIKVLRKDVDVLTLSATPIPRTLYMSLSGVREMSLI 797 Query: 777 ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 TPP R +KT + D +R AI +E+ RGGQV+Y+ VE I++ A L E++P Sbjct: 798 TTPPPLRRPIKTHLASLDPEAMRSAIRQELDRGGQVFYVVPRVEGIEEVAAGLREMLPGL 857 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 ++ + HGQM E ELE M F+ +V++CTTI+E+G+DIP NTI+IE A FGLAQL Sbjct: 858 KLLVAHGQMAEGELENAMVAFNAGEADVMLCTTIVESGLDIPRVNTILIEDAHRFGLAQL 917 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 +QLRGRVGRS QA+AWL P +++ A++RL AI LG+G+ LA D+EIRG G Sbjct: 918 YQLRGRVGRSGIQAHAWLFYPGNASLSDTARQRLRAIQEFAQLGSGYQLAMRDMEIRGVG 977 Query: 957 ELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 LLG +QSG METIGF LYME+L+ ++ ++ PS+E T+V+L + + +P D+ Sbjct: 978 NLLGVQQSGQMETIGFDLYMEMLQESLAEIQGQDIPSVE-----DTQVDLPVTAFVPADW 1032 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076 I D + +++ Y+ A T L E+ DR+G LP +LL + L+ A++ G Sbjct: 1033 ITDPDEKIAAYRAAADCLTAEALVELAAGWADRYGALPAAVVSLLQLMELKLLAKRCGFS 1092 Query: 1077 KLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLK-----FIQDLSERKTR 1131 +++ + V+E + GL Q ++ + + + Sbjct: 1093 RIKPEKPNIVLETPMEEPAFRLLRQGLPQHLHGRLVYQAGNGIQHKVMARGLGVLPMEKQ 1152 Query: 1132 IEWVRQFMR 1140 +E + +++R Sbjct: 1153 LEQLMEWLR 1161 >UniRef50_B5YFB2 Transcription-repair coupling factor n=2 Tax=Dictyoglomus RepID=B5YFB2_DICT6 Length = 1070 Score = 1021 bits (2641), Expect = 0.0, Method: Composition-based stats. Identities = 369/1129 (32%), Positives = 602/1129 (53%), Gaps = 84/1129 (7%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 E + + L + L +R+ P++ + + ++ + +++ + Sbjct: 24 EFSNLEKEINSRSNIKLFGIYKGFFPLLF-LYLKRYKRPILWVTNNEEDL-SIWEDLQE- 80 Query: 63 TDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSF 122 D + L + LPY+ + RL + + ++ + +L+ + P Sbjct: 81 -DLELSILPPYVHLPYERPLRSPQVQGKRLKAISDIIYNNSFSIVASLKSLIYPLIPKEN 139 Query: 123 LHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRL 182 + L +K G+ ++R+ + L Y+ QV + GEY+ RG +LD+FP E P R+ Sbjct: 140 IEKRILKIKVGEEITREKIEKFLAENLYQRTPQVEKIGEYSIRGGILDIFPPLYENPIRI 199 Query: 183 DFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPE 242 +FF DEI S+R F+++ +R+++ + + L P E DK F Sbjct: 200 EFFGDEISSIRFFNLEDKRSIKTTKEVILTPISELIEDKNEESYFLKN------------ 247 Query: 243 HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG--DLETSAERFQADTL 300 E LFSY P +T+LV E++ L Sbjct: 248 -----------------------KEIKTYLFSYLPKDTILVFENHKASLALLEKWTGKGL 284 Query: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 360 A FE R P+ L+L EL + + + + L + +L F Sbjct: 285 ANFEKRRTKEN----LPEGLYLTDYELQNFISKYQVLDL-------NSTEPDLVFTIYSP 333 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 + + + ++ FLE +FS + R L L Sbjct: 334 PSYRGTNEFFEKNIKSFLENGWEVHIFSEHQDIIRTRLKNL------------------- 374 Query: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 +YL GF+ + +I + ++ G++ R+ + + P ++L L G Sbjct: 375 NVKYLTEEKVREGFLWENEKVLVITDYEIFGKKRKRKPIRYEKGLKP----KDLYLLKDG 430 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 VVH+ +G+G + G+ L+ + E++ + YAN++ LYVP+ +HLI RY + E Sbjct: 431 DYVVHVNYGIGIFRGLKKLKIDDVEKEFIYIEYANNSFLYVPLEEMHLIQRYVSSSPEPP 490 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 + +L W ++K E +++A ELL +YAQR EGFAF D + SFP+ Sbjct: 491 QISRLESHQWEETKRKVKESAKEIAEELLKVYAQRELTEGFAFSPDSPLQEELEASFPYV 550 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 T DQ +A+ + DM M+R++ GDVGFGKTE+A+RA+F AV + KQVA+LVPTT+ Sbjct: 551 ETEDQIKALKEIKRDMESKKPMERVLIGDVGFGKTELALRASFKAVLDGKQVAILVPTTI 610 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LA QH+ FR+R +PV +E++SR + EQ +I+ + +G+IDI+IGTH++LQ DV+F Sbjct: 611 LAYQHWKVFRERLEVFPVNVEILSRLKPKSEQKRIIERIRKGEIDIIIGTHRILQKDVEF 670 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 KDLGL+IVDEEHRFGV KE K +VDIL L+ATPIPRTL+M +SG+R S++ TPP Sbjct: 671 KDLGLIIVDEEHRFGVLQKESFKKKYPHVDILYLSATPIPRTLSMVLSGIRQFSVLETPP 730 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 RL ++TFV EY+ +++E I RE+ RGGQVYY+ ND+E ++K E L +LVPEA +I Sbjct: 731 ENRLPIQTFVVEYNPEIIQEGIRRELERGGQVYYVCNDIERLEKIKEELTKLVPEATYSI 790 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 HG+M + EL VM++F+ + +VL+ TTIIE+GID+P ANT+ +E A+H GLAQL+QLR Sbjct: 791 AHGKMDDEELTEVMSNFYDGKIDVLIATTIIESGIDVPNANTLFVENAEHMGLAQLYQLR 850 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GR+GRS+ QAYA+ L K ++ D+ KRLEA+ LG+G LA DLEIRGAG++LG Sbjct: 851 GRIGRSYKQAYAYFLHAPLKKLSLDSIKRLEALKEFSSLGSGLRLALRDLEIRGAGKILG 910 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 +EQ G + ++GF LY++LLE A++ LK + + P+++P+ +I Sbjct: 911 KEQHGHINSVGFYLYLQLLEEAINELKN--SQGKSEKNKVNCRITHPFPAIIPEYYISQS 968 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 + R+ +Y+++A + N++++I+ EL D +G +P+P L +++++ A+K+GI K+E Sbjct: 969 SDRIYYYQKLAHLEDINDIDKIRKELEDIYGPIPEPVENLFILSQIKFFAEKIGIEKIEI 1028 Query: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERK 1129 +E + +++ + L +Y+ L+F++D+S K Sbjct: 1029 SEDKTKLTYSKG-------IERTLNLPRGNYKKKIQFLLQFLKDISNIK 1070 >UniRef50_UPI00016C571B transcription-repair coupling factor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C571B Length = 1121 Score = 1021 bits (2641), Expect = 0.0, Method: Composition-based stats. Identities = 377/1168 (32%), Positives = 581/1168 (49%), Gaps = 113/1168 (9%) Query: 10 PVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN 69 + AG + G++ A A +A G ++++ P ++++ F Sbjct: 33 ALAAGRSGTVDGAWGSSAALAAAALAAEVRGTLLVVVPHPVEVEPWAEDMASFLGTRPAV 92 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQL------PTMQRGVLIVPVNTLMQRVCPHSFL 123 WE+ P S D +++ L Q V++ ++ + Q V + L Sbjct: 93 FEMWESWPVSSNRGKLDPVTTSRLRLLQQLQRAGGAEGPPKVVVCGISAVCQPVPERADL 152 Query: 124 HGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLD 183 + G + L L + GY+ VD V GE++ RG + D+FP S P+RL+ Sbjct: 153 AARGRTLAAGDIVEPSELAEWLVANGYKRVDAVEFPGEFSRRGGICDIFPPDSPDPFRLE 212 Query: 184 FFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEH 243 FF DE++ LR F SQR+LE+ + + LLP Sbjct: 213 FFGDEVEGLRTFAAGSQRSLEKKDRVTLLPT----------------------------- 243 Query: 244 IYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT--LLVNTGDLETSAERFQADTLA 301 Q + G PA L Y P ++ +L+ DL A+ F Sbjct: 244 --DQGTAGARPA-------------KGHLADYLPPDSWVVLIEPRDLREQAKHFHE---- 284 Query: 302 RFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDL 361 + ++ F+ L P V L P+ A+ +L + + Sbjct: 285 ------------RVSTTDGLHTTEQAFAGLMKLPSVVLSALPRPSVEASVHLRVESVN-- 330 Query: 362 AVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR 421 D L V+ + +SE L E+L K+ A Sbjct: 331 RFSGSVHRVRDELDSIAHNATARVLVACQSEAEVHRLTEVLKAGKL----------AESH 380 Query: 422 GRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTIN---PDTLIRNLAELH 478 L+ G GF + ++ ++ + + ++ + I + +L+ Sbjct: 381 RLRLVTGHVRSGFRLVESGVIVLGSHEIFHKDLLPPGTKAQAKSSRTIESRAIDSFLDLN 440 Query: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGE--------------------YLMLTYANDAK 518 G VVH+ HG+ R+ GM L+ + +L+L + + Sbjct: 441 DGDYVVHVAHGIARFRGMRMLDKASGVQDTGEDSLFPDERPANPAAEEEHLVLEFRDGIF 500 Query: 519 LYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAK 578 LYVP + + L+ +Y GG++ L K GG AWSR ++K +E VRD+AAE+++I A R A Sbjct: 501 LYVPATRIDLVQKYVGGSQAEPQLSKPGGAAWSRKKEKVSEAVRDMAAEMINIQALRQAV 560 Query: 579 EGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVA 638 G F D + + F +FP++ TPDQ AI V D+ + MDRL+CGDVG+GKTEVA Sbjct: 561 PGHQFPPDSDWQKEFEAAFPYQETPDQLSAIAEVKGDLEKTKPMDRLICGDVGYGKTEVA 620 Query: 639 MRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAE 698 +RAAF AVD+ KQVAVLVPTT+LA+QH+ F RFA +P ++ ++RF+S +Q + L + Sbjct: 621 IRAAFKAVDSGKQVAVLVPTTVLAEQHFRTFTQRFAEYPFMVDAVNRFKSGAKQKETLKK 680 Query: 699 VAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATP 758 +A G++D+++GTH+LL DV FKDLGL+++DEE RFGV HKER+K +RA VD+LT+TATP Sbjct: 681 LAAGEVDVIVGTHRLLSKDVTFKDLGLVVIDEEQRFGVEHKERLKHLRATVDVLTMTATP 740 Query: 759 IPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYND 818 IPRTL+ ++ G+R++S + TPPA R V+T + +D +R AILRE+ RGGQVY+++N Sbjct: 741 IPRTLHASLLGIREISNLETPPADRQPVETHITRWDDKQLRNAILREMNRGGQVYFVHNR 800 Query: 819 VENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIP 878 V++I + A ++ LVPEA++ +GHGQM +LE+ M F + ++LV TTIIE+G+DIP Sbjct: 801 VQDIYEVATKIEILVPEAKVTVGHGQMDAHDLEKAMVRFVRKEADILVATTIIESGLDIP 860 Query: 879 TANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLED 938 ANTI I+ AD +GLA LHQLRGRVGRS H+AYA+ + K + AQ+RL+AI + Sbjct: 861 NANTIFIDEADTYGLADLHQLRGRVGRSKHRAYAYFIVNPLKLLNPTAQRRLKAIEEFTE 920 Query: 939 LGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLT 998 LGAGF +A DLEIRGAG +LG EQSG + IG+ LY +LLENAV ALK Sbjct: 921 LGAGFKIAMRDLEIRGAGNILGGEQSGHIAAIGYELYCQLLENAVRALK-----HQPPKV 975 Query: 999 SQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPAR 1058 + V+L PS LP D++ R+ Y+R+A + +L + + EL DR+G P+P Sbjct: 976 AVDVVVDLPWPSYLPRDYVQGQKLRIEVYRRLARLRDPAKLADFRTELRDRYGEPPEPVE 1035 Query: 1059 TLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTR 1118 LL +R K + + + + V + + + ++ Sbjct: 1036 WLLRTTEVRLLCVKWLVASVHRHGQDIVFTYR-----SAERAKQFVAASRGRLKIVDDKS 1090 Query: 1119 LKFIQDLSERKTRIEWVRQFMRELEENA 1146 + + T + + L+ A Sbjct: 1091 VYLRLRSGDADTPAGIYKLLLGVLKPAA 1118 >UniRef50_C2D9Q8 Possible transcription-repair coupling factor n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9Q8_9ACTN Length = 1198 Score = 1021 bits (2640), Expect = 0.0, Method: Composition-based stats. Identities = 352/1114 (31%), Positives = 554/1114 (49%), Gaps = 50/1114 (4%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 E +R + G+ L ++ +A +VA A A P++L+ A R ++ + Sbjct: 15 EIHRIWNELDQGKDCTL-NISQSARPFIVAACACAQARPILLVVSGEDAADRAARILAGW 73 Query: 63 T-DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 +V D LP+ S ++ +R L+ L QR V++ L++R+ P + Sbjct: 74 LGPDVVFRYPDRADLPWSDKSASAEVCGTRAEALFHLAQPQRCVVVASARALLRRLPPKT 133 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRH---VDQVMEHGEYATRGALLDLFPMGSEL 178 + G L AL QL GY V +V E G + G +D+F + Sbjct: 134 SSFAQQQKICIGDELDIYALARQLVLWGYVSTTVVKEVREPGYFCVHGDSVDVFSPCEQA 193 Query: 179 PYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVK 238 P R+ FF DE+D +R + +T+ + A E I+ +++ D + Sbjct: 194 PVRISFFGDEVDEIRKVVPSTGQTISSQQQAVFYAARELELSPETIQCAKNKLYDKAQED 253 Query: 239 RDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQAD 298 D E + Q+ + ++ + P + + Y + L+V D Sbjct: 254 LDTERVLDQIEESVYTNELDAYLPYLYP-STASVIDYMHPSALVVL-----AEPRALFDD 307 Query: 299 TLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKL 358 ++ + L+ EL + R+ L + A+ ++ ++ Sbjct: 308 CQRAYDELMHASTEKRVSLDGLYTSPVEL--DFGKQQRLSLSSLARQGMRASNHVVTEQC 365 Query: 359 PDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE- 417 + + +R+ L + VVFSV G R AL I+ + Sbjct: 366 D---IAGSASKMIGRIRELLAN-NSAVVFSVPDRGARRALQLSFTDENISFEDASEHASE 421 Query: 418 -----------------------ASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERV 454 G V +LA+ SDL Sbjct: 422 HASKRAPEHESEHNQDLEAQNLPLPRNKVVFFADPINAGIVIPSAHLAIFSVSDLNAHLN 481 Query: 455 ARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA 514 ++ + I+P L G VVH HG+ + + E G +Y +LTYA Sbjct: 482 NKKHRFQ--KIDPTKLTFPF---KPGDYVVHATHGIALFQKIVQQEVAGKKRDYFLLTYA 536 Query: 515 NDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQ 574 D KLYVP + I+RY G L +L WSRA +A + + +A +L+D+Y + Sbjct: 537 QDDKLYVPFEQVDKITRYIGPDGSTPRLTRLNSADWSRACTRARKSAQKMAFDLVDLYTR 596 Query: 575 RAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGK 634 R+ +GF+F D + SFP+ T DQA+A++ + +DM MDRL+CGDVGFGK Sbjct: 597 RSTIKGFSFSFDTPAQEDMETSFPYTLTRDQARALDDIKADMQSATPMDRLLCGDVGFGK 656 Query: 635 TEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQ 694 TEVA+RAAF +HKQV VL PTT+LAQQH++ F +RF + V + ++SRF EQ + Sbjct: 657 TEVALRAAFKCCQDHKQVMVLCPTTILAQQHFETFYERFTPFEVNVRVLSRFIKPAEQKR 716 Query: 695 ILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTL 754 L + G +D+LIGTH+LL SDV +LGL+I+DEE RFGV+HKE++K +R VD+LTL Sbjct: 717 TLEGFSTGDVDVLIGTHRLLSSDVNPSNLGLIIIDEEQRFGVQHKEQLKNIREQVDVLTL 776 Query: 755 TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYY 814 +ATPIPRT+ MAMSG+RD+S+I + PA R V+ V E+DS ++ +AI E+ R GQVYY Sbjct: 777 SATPIPRTMQMAMSGVRDMSLILSAPAGRKPVRVHVGEWDSDLISDAIRLELARKGQVYY 836 Query: 815 LYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874 + N V+ I A ER+ PEAR+ + HGQM ++E VM F +VLV TTIIE+G Sbjct: 837 VSNRVKTIDDALERVHACAPEARVGVAHGQMSPSQIEEVMLLFEEHEIDVLVATTIIESG 896 Query: 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIA 934 ID P NT+IIE + GLAQL+QL+GRVGR QAYA+ + P + +T +A++RLEAI Sbjct: 897 IDNPHTNTLIIEDSQRLGLAQLYQLKGRVGRGRVQAYAYFMFPPTEPLTEEARRRLEAIY 956 Query: 935 SLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSL 994 ++LG+G +A DLEIRGAG L+G EQ G++ +GF L+ ++L +AV K + + Sbjct: 957 EHQELGSGMRIAMKDLEIRGAGSLMGAEQHGNLSGVGFDLFTQMLSDAVREAKGETQHTD 1016 Query: 995 EDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLP 1054 + + + +D++P+++ R+ Y+R+A+A +E++ ++ E +D G L Sbjct: 1017 L----AEVVINIPADFYFSEDYVPEIDKRVLLYRRLAAATELSEVDALEKETLDTHGALE 1072 Query: 1055 DPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088 L AR+R +A +LG++ + +++ Sbjct: 1073 PAGVNLFGRARIRIRAARLGVQTVSALTDKIILQ 1106 >UniRef50_C2KSG9 Possible transcription-repair coupling factor n=2 Tax=Mobiluncus mulieris RepID=C2KSG9_9ACTO Length = 1172 Score = 1020 bits (2638), Expect = 0.0, Method: Composition-based stats. Identities = 400/1149 (34%), Positives = 599/1149 (52%), Gaps = 65/1149 (5%) Query: 42 VVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM 101 V++ P + A L ++S +T + V DWETLP++ SP D ++ R+ L++L Sbjct: 41 TVILTPSGRGAEELARDLSCWT-RGVEVFPDWETLPHERLSPRTDTMARRIWALHRLTHP 99 Query: 102 QR-------------------GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALR 142 + L+VP+ + V L + G+ RD + Sbjct: 100 EAFGTEGTNSEVGESAEHNPIKFLVVPMRAALAPVNTK-ILSYPLFKAQVGKAYGRDEMS 158 Query: 143 TQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRT 202 L + GY + V+ G+Y+ RG ++D+F S P R++ F DEIDS+R F V QRT Sbjct: 159 RDLAALGYERTELVVTRGQYSLRGGIVDVFSAVSPHPVRIELFGDEIDSIRPFAVSDQRT 218 Query: 203 L-EEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQ 261 +E +++ EF D E R I ++G G+E Sbjct: 219 FNQEFQSVTAPACREFLLD----ETARVHAASLAAQLPQAAEILNLAAQGIYSEGLESLG 274 Query: 262 PLFFSEPLPPLFSYFPANTLLVNTG------DLETSAERFQADTLARFENRGVDPMRPLL 315 L +E + PLF P LV T E A + PL Sbjct: 275 ALLGAE-MKPLFELLPPGARLVATDLPRLEARAVELGETTAEFLAASWSAAADGSEIPLE 333 Query: 316 PPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALR 375 + +L +D L L+ T + G + +P A + +R Sbjct: 334 INTASFLDLDALRVSEAKAGMKTLRISPFATHESATTSGAETVPLPTTGAT--GIISTIR 391 Query: 376 KFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD--RGRYLMIGAAEHG 433 + VV + S G + L LLA I Q LD + ++ + G Sbjct: 392 ERAREH-WTVVIAATSNGMVQRLHRLLAENDIPAQVSADLDAEPERSGKTWVTVAPITEG 450 Query: 434 FVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRY 493 F L +I E++ LG+R AR + + + L G+ VVH +HG+GR+ Sbjct: 451 FALAEAKLLVISEAEALGKRQARHHEQKVKLPTRRRKTIDPLSLSPGEYVVHAQHGIGRF 510 Query: 494 AGMTTLEAG----GITGEYLMLTYAND------AKLYVPVSSLHLISRYAGGAEENAPLH 543 + G + EY++L YA L+VP SL ++S+Y G E L Sbjct: 511 VKLEKRTIGKGNKATSREYVVLEYAPSQRQGSKDLLWVPTDSLDMLSKYVG--GETPTLS 568 Query: 544 KLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTP 603 K+GG W++A+QKA + V+D+A EL+ +YA R + +G AF D + DSF + TP Sbjct: 569 KMGGTDWNKAKQKARKAVKDIARELVRLYAVRQSSKGHAFSPDTPWQRELEDSFEYVETP 628 Query: 604 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQ 663 DQ I+ V +DM +P+ MDRL+CGDVG+GKTE+A+RAAF AV + KQVAVL PTTLL Sbjct: 629 DQLTTIDEVKADMEKPVPMDRLLCGDVGYGKTEIAVRAAFKAVQDGKQVAVLAPTTLLVS 688 Query: 664 QHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 723 QH + F++RFA +P+ + +SRF + KE T+I A++A+GKI++++GTH LL V+FKDL Sbjct: 689 QHLETFQNRFAAFPITVAALSRFTTVKEATRIKADLADGKIEVVVGTHALLSGKVRFKDL 748 Query: 724 GLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 783 GL+++DEE RFGV HKE +KA+R NVD+L ++ATPIPRTL MA++G+R LS + TPP R Sbjct: 749 GLVVIDEEQRFGVEHKEALKALRTNVDVLAMSATPIPRTLEMAITGIRGLSTLTTPPEER 808 Query: 784 LAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHG 843 V T+V Y V AI RE+LR GQV+Y++N V++I + A+ L LVPEARI +GHG Sbjct: 809 HPVLTYVGAYSDRQVAAAIRREMLRDGQVFYVHNRVQDIARVAKHLQSLVPEARIRVGHG 868 Query: 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903 QM E +LE+VM DF +Q F+VLV TTI+E G+D+ ANTIII+RA+ GL+QLHQLRGRV Sbjct: 869 QMPETQLEQVMMDFWNQEFDVLVSTTIVENGLDVTNANTIIIDRAERMGLSQLHQLRGRV 928 Query: 904 GRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQ 963 GR + YA+ L P ++ A +RL+ I S LGAG A+A DLEIRGAG LLG EQ Sbjct: 929 GRGRERGYAYFLYPGGDTLSETAFERLKTIGSNTSLGAGMAIAQKDLEIRGAGNLLGGEQ 988 Query: 964 SGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTR 1023 SG + +IGF LY+ ++ AV A E +E+ + + +P+D++ + R Sbjct: 989 SGHIASIGFDLYVRMVGEAVAAYNGE-----EPAEDTAVNLEIPVDAYIPEDYLEAQSLR 1043 Query: 1024 LSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 L Y R+++A + E++++ E+ DR+G P + L ++A+LR A+K G+R++ K Sbjct: 1044 LDAYTRLSNATLDEEIDQLLDEMDDRYGRPPSSVQRLGELAKLRNLARKYGLREIGVRGK 1103 Query: 1084 GGVIE--------FAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWV 1135 A ++P +I L ++ + R + ++WV Sbjct: 1104 FIRFTPVELADSQLARLKRLHPGAIIKLATRE--LFIPKPVKREGLSETPVVDVELMDWV 1161 Query: 1136 RQFMRELEE 1144 + + + Sbjct: 1162 SGVISAIIK 1170 >UniRef50_C8WGM0 Transcription-repair coupling factor n=3 Tax=Coriobacteriaceae RepID=C8WGM0_EGGLE Length = 1161 Score = 1019 bits (2636), Expect = 0.0, Method: Composition-based stats. Identities = 369/1170 (31%), Positives = 582/1170 (49%), Gaps = 59/1170 (5%) Query: 7 YTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-Q 65 + + AGE L + +A LVA P +++ A+ ++ + + Sbjct: 19 FWGKLDAGEDGTL-GVASSARPFLVAARFAHRPQPTLVVVAGEDAAVAFSRSLAAYLGDE 77 Query: 66 MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHG 125 VM + P+ ++ R+ ++ L + + V++ L++ + P Sbjct: 78 RVMRFPERSDYPFVPKPSDPAQVARRMEAVHALASGREVVVVASARALVRALPPAGSDVH 137 Query: 126 HALVMKKGQRL------------SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFP 173 + + G+ L + L+ GYR+ ++ G +A RG +D+FP Sbjct: 138 VPVALSAGRELAAMPGAQAASVTEFEDFAHALEERGYRNTGELDGPGTFAVRGGTIDVFP 197 Query: 174 MGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRD 233 P RLDFF DE++ +R + +T++ + +++ P EF K + R + Sbjct: 198 GNLVYPVRLDFFGDELEEIRRIVPTTGQTIQALPDVSIYPVVEFSCSKRGLARARQKLER 257 Query: 234 TFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT--LLVNTGDLETS 291 + +++ G G + P ++ L Y +L+ L Sbjct: 258 PAATNPVLRDVLEKLDGGLRFDGSDMLLPYLYA-TTSTLGDYVRPGALSVLLEPRSLFDD 316 Query: 292 AERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANA 351 D R + + P ++ + + + + LP K Sbjct: 317 MSHAYDDAAGRAKGSSIPVDGLYAEPGAVSFGEGQRATYVSIMRVGGHVDDELPVKR--- 373 Query: 352 NLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQR 411 + V LR ++T D VVFS + R+ + + Q Sbjct: 374 ---------VEVAGHPDKLFGRLRSLVDT-DYTVVFSASNFRARQDMKLAFVDHGLPIQE 423 Query: 412 IMRLDEASDRGRYLMIGAAEHG------------FVDTVRNLALICESDLLGERVARRRQ 459 + +E +D + G + LA++ SD G Sbjct: 424 TLDAEEDADELEGIAKRRLRRGVVNVVDVDVPLGMIIPKAKLAIVSLSDTQGA----STS 479 Query: 460 DSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKL 519 R ++ + G VVH HGV + + + G +YL+L Y+ KL Sbjct: 480 RPSRHVDITEITFPY---QPGDYVVHAAHGVAYFKELVRRDVDGTARDYLLLEYSEGDKL 536 Query: 520 YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 YVPV L ++RY G + L +L WSRA KA + + +A +L+D+YA+RA+ + Sbjct: 537 YVPVEQLDRVTRYVGPEGASPRLTRLNTADWSRALAKARKATKKLAFDLVDVYARRASVQ 596 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 G+ F D + ++FP++ TPDQ AI V +DM MDRLVCGDVGFGKTEVA+ Sbjct: 597 GYRFGPDTAAQREMEEAFPYQETPDQLAAIADVKADMQSAKPMDRLVCGDVGFGKTEVAL 656 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 RAAF A + KQV VL PTT+LAQQHY NF++R + VR+E++SRFR+ +Q L Sbjct: 657 RAAFKATQDSKQVMVLCPTTILAQQHYTNFKERCEPFGVRVEVLSRFRTPAQQAAALKGF 716 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 EG +D+L+GTH+LL DV DLGL+I+DEE RFGV HKE++K +R ++D+LTL+ATPI Sbjct: 717 QEGDVDVLVGTHRLLSRDVNPHDLGLVIIDEEQRFGVGHKEQMKNLRESIDVLTLSATPI 776 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRT+ M++SG+RD+S+I TPP R V+ V E+D VV AI RE+ RGGQVYY+ N V Sbjct: 777 PRTMQMSLSGVRDMSLILTPPDERRPVEVHVGEWDPDVVSGAIRRELARGGQVYYVSNRV 836 Query: 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 ++++A R+ EAR+ + HGQM + +LERVM DF +VLV TTIIE+GID P Sbjct: 837 RSMEEAVRRVTAAAGEARVGVAHGQMSKEQLERVMEDFSAGELDVLVATTIIESGIDNPH 896 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 NT+IIE + +GLAQ++QL+GRVGRS QAYA+ + P +T +A RL A+ DL Sbjct: 897 TNTLIIEDSQRYGLAQMYQLKGRVGRSCTQAYAYFMFPEHMELTEEAAARLTALNEHTDL 956 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 G+G +A DLEIRGAG LLG EQSG+M +GF L+ ++L AV A + G +++ L Sbjct: 957 GSGMRIAMRDLEIRGAGSLLGAEQSGNMSAVGFDLFAQMLNQAVSATREGDLKAMDALPP 1016 Query: 1000 QQTEVELRMPS--LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPA 1057 +++ + +P LP++++PD + R+ +Y+RIASA TE +E+++ +L D+ +P A Sbjct: 1017 ALSDITVNVPGHTYLPEEYVPDADERVLWYRRIASAATEQAVEDVRADLADKRPDMPQAA 1076 Query: 1058 RTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPT 1117 + LL+ AR++ A + I+ + V+E + L ++ Y L Sbjct: 1077 KNLLEKARIKAYANEHHIKTVSVTAGKLVVEPIDVPRDKMTGL----RRAGGRY-LADKR 1131 Query: 1118 RLKFIQ---DLSERKTRIEWVRQFMRELEE 1144 +L L E + V +F+ EL + Sbjct: 1132 KLSLPLRYFKLDEGDNLLAPVAEFLEELAK 1161 >UniRef50_A6L2L5 Transcription-repair coupling factor n=49 Tax=Bacteria RepID=A6L2L5_BACV8 Length = 1121 Score = 1019 bits (2634), Expect = 0.0, Method: Composition-based stats. Identities = 361/1152 (31%), Positives = 582/1152 (50%), Gaps = 86/1152 (7%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLAD- 72 LG L +A A V+ + V + D++ A + +++Q ++ Sbjct: 29 RTIFLGGLHASAAALFVSSFLRENKQTFVFVLGDLEEAGYFYHDLTQVNGDEHILFFPSS 88 Query: 73 -WETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 + Y +I+ R L +L ++ L ++V L L + Sbjct: 89 YRRAVKYGQKDAANEIL--RTEVLSRLQKGDPLCVVTYPEALAEKVVSQEVLMDKTLKLG 146 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 G+ + + + L G+ HVD V E G+YA RG+++D+F SE PYR+DFF DE+DS Sbjct: 147 VGEHVDTEFITEVLAGYGFEHVDYVYEPGQYAVRGSIIDVFSFASEYPYRIDFFGDEVDS 206 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKG 251 +R F+V++Q + E+ ++I ++P DK+ + F R+T +D + +++ Sbjct: 207 IRTFEVENQLSKEKKQSIAIVPELTNAADKSGVSFFEFIPRETVLAMKDFLWVRERIQ-- 264 Query: 252 TLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPM 311 E LA +E + M Sbjct: 265 -------------------------------------VVREEALSPQALAAYEGEKTELM 287 Query: 312 RPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPL 371 L + E ++ R++ + PT A L F Sbjct: 288 NLELK----LIDGAEFTVRALDFKRIEFG--NKPTGTPQATLAFDTTVQPIFHKNFDLVS 341 Query: 372 DALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAE 431 + + + + +SE + + L ++ I + Sbjct: 342 TSFTDYQKR-GYTLYICTDSEKQAKRLKDIFEERGDHITFIP------------VNKTLH 388 Query: 432 HGFVDTVRNLALICESDLLGE-RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 GF D V + + R D R+ ++ L++ G VVH++HGV Sbjct: 389 EGFTDNVLKSCFFTDHQIFDRFHKYNLRSDKARSGKVALTLKELSQFEPGDFVVHIDHGV 448 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW 550 GR+ G+ + G T E + L Y N+ ++V + SLH IS+Y G E L+KLG AW Sbjct: 449 GRFGGLVRIPNGNTTQEVIKLIYQNEDVVFVSIHSLHKISKYKGKEGETPRLNKLGTGAW 508 Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 + +++ K++D+A +L+ +Y+QR ++GF++ D SF +E TPDQ +A Sbjct: 509 EKMKERTKSKIKDIARDLIRLYSQRKQEKGFSYSPDSFMQHELEASFIYEDTPDQLKATQ 568 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 +DM MDRLVCGDVGFGKTEVA+RAAF AV ++KQVAVLVPTT+LA QH+ F Sbjct: 569 DAKADMESDRPMDRLVCGDVGFGKTEVAIRAAFKAVADNKQVAVLVPTTVLAYQHFQTFS 628 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 +R ++P +++ +SR RSAK+ ++I+ E+A+GKI+IL+GTHK++ VKFKDLGLLI+DE Sbjct: 629 ERLKDFPCKVDYLSRARSAKDVSRIVKELADGKINILVGTHKIIGKSVKFKDLGLLIIDE 688 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 E +FGV KE+++ M+ NVD LT+TATPIPRTL ++ G RDLS+I TPP R ++T V Sbjct: 689 EQKFGVSVKEKLRQMKVNVDTLTMTATPIPRTLQFSLMGARDLSVIQTPPPNRYPIQTEV 748 Query: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 ++ ++ EAI E+ R GQV+++ N ++N+ + + +P+ R+ IGHGQM +L Sbjct: 749 HTFNEDIITEAINFEMSRNGQVFFVNNRIQNLVELEAMIKRNIPDCRVCIGHGQMEPEKL 808 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 E+++ DF + ++VL+ TTIIE+GIDIP ANTIII +A +FGL+ LHQ+RGRVGRS+ +A Sbjct: 809 EKIIFDFVNYDYDVLLATTIIESGIDIPNANTIIINQAQNFGLSDLHQMRGRVGRSNKKA 868 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 + +LL P ++T +A++RL+AI + DLG+G +A DL+IRGAG +LG EQSG + + Sbjct: 869 FCYLLAPPLTSLTPEAKRRLQAIENFSDLGSGIHIAMQDLDIRGAGNMLGAEQSGFIADL 928 Query: 971 GFSLYMELLENAVDALKA--------------GREPSLEDLTSQQTEVELRMPSLLPDDF 1016 G+ Y ++L AV LK G E + + +VE + L P+++ Sbjct: 929 GYETYQKILAEAVKELKEDEFADLYAEELQAAGEEKISGENFVDECQVESDLELLFPNEY 988 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076 IP + R+ Y+ + + + +L K L DRFG +P LL I LR+ A++LG+ Sbjct: 989 IPSSSERMLLYRELDGLELDKDLLAFKARLEDRFGKVPPEGLELLRIVPLRRLAKRLGVE 1048 Query: 1077 KLEGNEKGGVIEFAEKNHVN------PAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKT 1130 K+ + F +I + K P++ L + + + Sbjct: 1049 KVFLKAGRMTLFFISNQESPYYQSAAFGKVIDYMSKNPRYCNLREQNGKRSMVV--KNVE 1106 Query: 1131 RIEWVRQFMREL 1142 +E ++E+ Sbjct: 1107 TVETAVGILQEM 1118 >UniRef50_C6XGB7 Transcription-repair coupling factor n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XGB7_LIBAP Length = 1187 Score = 1018 bits (2632), Expect = 0.0, Method: Composition-based stats. Identities = 380/1162 (32%), Positives = 610/1162 (52%), Gaps = 41/1162 (3%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADW 73 ++ L + ++AEIA R +V I D + + L ++ V+ W Sbjct: 16 KKITLSPVIDGTEGFILAEIA-RLGLSLVYICSDERILINLKKILTLVVPDIRVIIFPAW 74 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQL----PTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 + LPYD SP +++ RLS + L + + +++ V+ +M R + + L Sbjct: 75 DCLPYDRVSPSPYVVTRRLSCISNLVSFNSSKETIIVLTTVSAVMCRSVNIMSIKDYKLS 134 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 ++ ++ + +L++ G++ V+ V + GEYA RG +LD++ + P RLDFF + I Sbjct: 135 IQSKDQIDMAKVIEKLETNGFQRVNAVYKVGEYAVRGGILDVYEPTKKYPVRLDFFGNTI 194 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVS 249 DSLR+FD +QRT+ E+ + E I FR + F + +Y +S Sbjct: 195 DSLRLFDSSTQRTIREISIFEINTLSEVMLTSQNISRFRENYLANFGTTTQEDPLYVAIS 254 Query: 250 KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETS------AERFQADTLARF 303 +G G+E+W P F+ + + +F Y ++ + ET+ + + L Sbjct: 255 QGRRYPGMEHWLPFFY-QSMETIFPYLSEFCIITDPLVKETARKRSQLIQDYYEARLQYS 313 Query: 304 ENRGVDPMRPLLPPQSLWLRVDELFSELKN-WPRVQLKTEHLPTKAANANLGFQKLPDLA 362 ++ + + P+ L+L + + ++ VQ+ + A N + P + Sbjct: 314 SDKKQYSVYKPIAPEKLYLNYQQFDALIQTTHKLVQMTAFNQQETAHNRVVHLNAFPGKS 373 Query: 363 VQAQQKAPLDALRKF---------------LETFDGPVVFSVESEGRREALGELLARIKI 407 +++ + + S S+G + L L+ Sbjct: 374 WVPSAVQKIESQDNWESGGRFDKFLSHVAQQAQKGIKTIISASSQGALQHLIHLIESHGF 433 Query: 408 A----PQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRR 463 + ++ +I GF +++ L+ E+DLLG+++ARR R+ Sbjct: 434 KKIKKINTLTEINSLLKEEIAAVILPINQGFE--TKHMILVTETDLLGKKIARR--VVRK 489 Query: 464 TINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPV 523 + + + G +VH EHG+GR+ + ++E G + L L YA++AKL+VPV Sbjct: 490 KNVHAQSFFDSSNIEEGAIIVHAEHGIGRFVRLYSIEVSGTFHDCLELHYADNAKLFVPV 549 Query: 524 SSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAF 583 ++ LISRY L KLGG AW + +++ D+A +L+DI A+RA Sbjct: 550 ENIDLISRY-STEITTVTLDKLGGSAWKTRKANLKKRLEDLAQKLVDIAAKRAIHSVPPL 608 Query: 584 KHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 643 ++ Y F FP T DQ +AI+AV+ D+ MDRL+CGDVGFGKTE+A+RAAF Sbjct: 609 MVSQDLYSQFIKRFPHVETEDQEKAIDAVIQDLSSGRLMDRLICGDVGFGKTEIALRAAF 668 Query: 644 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK 703 +AV N QVAV+ PTTLL +QH+ F +RF + VRI ISRF KE + EG+ Sbjct: 669 IAVMNGLQVAVIAPTTLLVRQHFRLFSERFQGFSVRIASISRFVQTKEAALHKKSITEGQ 728 Query: 704 IDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTL 763 +DI+IGTH LL + F +LGL+I+DEE FGV+HKE +K V +LTL+ATPIPRTL Sbjct: 729 VDIVIGTHALLNPKITFANLGLIIIDEEQHFGVKHKEALKETHTGVHVLTLSATPIPRTL 788 Query: 764 NMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQ 823 +A++G+R+LS+I+ PP R+A +T + +D +VVRE ++RE RGGQ +Y+ + +++ Sbjct: 789 QLAITGVRELSLISMPPINRIACRTSISIFDPLVVRETLMREYYRGGQSFYVCPRLSDLE 848 Query: 824 KAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 K L VPE +IA+ HGQM + LE MN F+ +++VL+ T+I+E+G+D+P ANT+ Sbjct: 849 KCYTFLQSEVPELKIAMAHGQMSPKNLEDKMNAFYEGQYDVLLSTSIVESGLDLPKANTM 908 Query: 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGF 943 I++RAD FGLAQL+QLRGRVGRS ++A L P + +T AQKRL + SL LGAGF Sbjct: 909 IVQRADMFGLAQLYQLRGRVGRSKIASFALFLLPENRPLTAAAQKRLRILQSLNTLGAGF 968 Query: 944 ALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTE 1003 LA++DL+IRG G LLGEEQSG + IGF LY ++LE V ++K ++ D + Sbjct: 969 QLASYDLDIRGTGNLLGEEQSGHIREIGFELYQKMLEETVASIKGQKDLVESDW---SPQ 1025 Query: 1004 VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDI 1063 V + ++P+ ++ D+N RLS Y+R+ + ++ K E++DRFG LP LL + Sbjct: 1026 VLIEASVMIPESYVSDINLRLSLYRRLGNITDHADISHFKEEMVDRFGPLPIEVIHLLKV 1085 Query: 1064 ARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQ 1123 L+ + I K++ KG +I+F K NP L+ + +Q + L F Sbjct: 1086 VFLKLLCRIANIDKMDIGLKGIIIQFRHKTFSNPEALLQYIAQQKGKIIIRPDQNLVFDC 1145 Query: 1124 DLSERKTRIEWVRQFMRELEEN 1145 L R ++ + L Sbjct: 1146 LLPTINQRFFEAKRIITHLINM 1167 >UniRef50_C5NXX8 Transcription-repair coupling factor n=1 Tax=Gemella haemolysans ATCC 10379 RepID=C5NXX8_9BACL Length = 1183 Score = 1017 bits (2629), Expect = 0.0, Method: Composition-based stats. Identities = 373/1175 (31%), Positives = 619/1175 (52%), Gaps = 59/1175 (5%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLA 71 K + + A + ++ VV+++ A L +S F + Sbjct: 16 KKHKNIGIYGQNLTTRALEIYNEYKQSDKTVVVVSQSKAEAEELFAILSDFEGE-TYIYP 74 Query: 72 DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 + + L S D++ + + L L + ++I+P+ + + V S ++ + Sbjct: 75 EIDILK-RHTSKSNDLVQNSIKVLENLVHNIQSIIIIPIEAIYRTVKNPSDFKNNSFEIN 133 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 + +S D L+ +L + GYR V+ V GE++ RG+++D+F SE P RLDFFDDE+DS Sbjct: 134 EDTVISFDELQRKLVNMGYRRVESVDVVGEFSKRGSIVDIFSPLSEKPIRLDFFDDELDS 193 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKR-DPEHIYQQVS- 249 +R+FD +QR+L+ +++ + P +F ++ + + K+ + YQ++S Sbjct: 194 MRIFDEITQRSLDRIDSAVIYPTSDFFLTSEEKDIVVERVLAKLDDKKIQKDENYQEIST 253 Query: 250 ----------KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQA 297 + +E + L + E + Y +T++ N + E + Sbjct: 254 YLKEKVEIYRATGDFSDLESFSNLIY-ENTYSIADYLNDDTIVFYDNYHKILEKIEGLRE 312 Query: 298 DTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQK 357 L + + + + ++ L L T L K N Sbjct: 313 YFLTSLQEMNRSYIYQDVIDNIAFEKIQNLDIRK-----YYLSTLKLNDKIIEKNYNLDI 367 Query: 358 LPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE 417 + DLA + ++ +R+ + + V+ S+ ++ +++ + ++L Sbjct: 368 I-DLAYYSSEEYLAKEIREKITD-NYKVIISLNTQKQKDYVEKVLFDN---YFYDDIYYG 422 Query: 418 ASDRGRYLMIGAAE-HGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAE 476 + ++ + G D + L+ +L E ++R+ + IRN E Sbjct: 423 VKEGKIFIDLNKYHLKGLEDRKNKIFLLTPRELFTEEERKKRRVKFK-YTNSEKIRNYQE 481 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 L+IG +VH+ HG+G Y G+ +E GG+ ++L + Y +YV +++++ I +Y Sbjct: 482 LNIGDYIVHVSHGIGLYEGIENVEVGGVFKDFLKIVYDGGDIIYVDINNMNYIQKYTAST 541 Query: 537 EE-NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCD 595 + L+KLG W + + + +++ D++ +L+ +Y +R G+A+ D F Sbjct: 542 DNRKPALNKLGTKNWQKTKSRVRKEIEDISEDLIKLYIKRELSSGYAYSIDGSLQAEFEA 601 Query: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655 F F T DQ +A + DM + MDRL+CGDVGFGKTEVAMR AF AV ++KQVAVL Sbjct: 602 DFSFTPTEDQVKATEEIKRDMEKERPMDRLLCGDVGFGKTEVAMRVAFKAVTDNKQVAVL 661 Query: 656 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 715 VPTTLLA+QHYDNF +RFAN+P+ IE++SRF+SAK+ T+I ++ EGKIDI++GTHKLL Sbjct: 662 VPTTLLAEQHYDNFVNRFANFPINIEVVSRFKSAKDITEICKKLEEGKIDIIVGTHKLLN 721 Query: 716 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 775 K+KDLGLLI+DEE RFGV+HKE+IK ++ VD+LTL+ATPIPRTL+M++ G+RDLS+ Sbjct: 722 DKFKYKDLGLLIIDEEQRFGVKHKEKIKHLKNTVDVLTLSATPIPRTLHMSLIGIRDLSV 781 Query: 776 IATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE 835 I TPP R ++TFV + MV++EA++ E+ RGGQV+Y+YN VE I + L L+P+ Sbjct: 782 IETPPRERQPIQTFVTAQNKMVIKEAVMNEVNRGGQVFYVYNRVETIDEKYLELKRLLPD 841 Query: 836 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 895 IA HG+M +RELE +M D +++++L+ TTIIETGIDI NT+I+E AD FGL+Q Sbjct: 842 INIAYAHGRMSQRELENIMTDVIDRKYDMLISTTIIETGIDISNVNTLIVEDADRFGLSQ 901 Query: 896 LHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGA 955 L+QLRGRVGRS +AYA+L+ K++T +++KRL AI + LG+GF +A DL IRGA Sbjct: 902 LYQLRGRVGRSSREAYAYLMYEPFKSLTENSEKRLSAIKNFTSLGSGFKIAMQDLSIRGA 961 Query: 956 GELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQT------------- 1002 G++LG Q G ++++G++LY ++LE + A K EP LE +Q Sbjct: 962 GDVLGGRQHGFIDSVGYTLYSQMLEQEIQAKKGILEPLLEQDRTQDVSYYENIIKEAAPS 1021 Query: 1003 -------------EVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDR 1049 E++L + + +P ++I ++ FYKR+ + ++ E+E I +LIDR Sbjct: 1022 IKKDIFEVETDDLEIKLNVDAFIPKEYISSDADKIDFYKRLNNVVSDEEIESIVEDLIDR 1081 Query: 1050 FGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEK--NHVNPAWLIGLLQKQ 1107 F + L+DI L+ A+ + ++ VI F ++ N++ L L Sbjct: 1082 FSDFGEEVNNLIDICYLKVMAKNTMVTSIKELANKVVITFNKEIMNNLKGKELFTALTPH 1141 Query: 1108 PQ-HYRLDGPTRLKFIQDLSERKTRIEWVRQFMRE 1141 L+ + RI + + Sbjct: 1142 KDTRIIAKDGFFLEIDKKERYSIRRIREMLTLVNS 1176 >UniRef50_Q2S6G5 Transcription-repair coupling factor n=2 Tax=Rhodothermaceae RepID=Q2S6G5_SALRD Length = 1142 Score = 1014 bits (2623), Expect = 0.0, Method: Composition-based stats. Identities = 380/1149 (33%), Positives = 591/1149 (51%), Gaps = 67/1149 (5%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM---VM 68 + G+ A L+ + P+ ++ PD A L ++ Q + ++ Sbjct: 30 DRSPALHVNGAAGSLPAFLLYHLHREPGAPLCVLTPDEDAAAYLQSDLEQLVGEPDEAIL 89 Query: 69 NLADWETLPYDSFSP-HQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHA 127 + + PYD + R L +L G+L+ V + + V P + Sbjct: 90 RVPATQKTPYDPDQIADSTPLIERADALQRLAEGFEGILVTSVPAVGELVPPPQAVQRET 149 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 L ++ G+ ++ +AL +L + V+ V E GE+A RG +LD+FP P R+DFF D Sbjct: 150 LTVENGEEIALEALADRLLEQDFSPVEFVEEPGEFARRGGILDVFPYAGTYPIRIDFFGD 209 Query: 188 EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 247 E+D LR FD +QR++ + L+P E E F+ D E + Sbjct: 210 EVDGLREFDPQTQRSVSRLTTARLVPNLE-------REEAARGSIALFQYLPD-EAVLAT 261 Query: 248 VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRG 307 + + + G + + L ++E + E Sbjct: 262 LDEAQVREGAQAQFEEAAAAYEE-------RRAELAENDEVEQTPEDL------------ 302 Query: 308 VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN--LGFQKLPDLAVQA 365 PP +L D++ + L PR+Q T + L + P + + Sbjct: 303 -------TPPDDRFLTGDQMAAALTRHPRLQFGTFSQSSTNGTPTDTLDLEADPQPSFNS 355 Query: 366 QQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYL 425 L+K + D +S G+ L +LL E L Sbjct: 356 DMDLVRKRLQKNGDR-DLDTFILCDSHGQSSRLRDLLE------------SEIDHGWARL 402 Query: 426 MIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVH 485 ++ + GF LA+ + + R R +R++ L G VVH Sbjct: 403 VVESLHEGFEWPGAGLAVFTDHQIFN-RYHRPSTKQWEGHADGMNLRDIKNLTRGDFVVH 461 Query: 486 LEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKL 545 ++HG+GR+ GM + E + L +A++ LYV V +LH +++Y G L KL Sbjct: 462 VDHGIGRFDGMKKITVRDNQQEAVRLNFADNDVLYVNVHALHKLNKYTGKEGHQPTLTKL 521 Query: 546 GGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQ 605 G + W + +Q+ ++V++VA +L+ +YA+R A +G+AF D + SF FE TPDQ Sbjct: 522 GSEQWEKKKQRTKDQVKEVARDLIKLYAKRKASDGYAFSSDTTWQREMEASFEFEDTPDQ 581 Query: 606 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 665 A+A AV DM +P+ MDRLVCGDVGFGKTEVA+RAAF AV + KQVA+LVPTT+LAQQH Sbjct: 582 AEATKAVKRDMEEPVPMDRLVCGDVGFGKTEVAVRAAFKAVQDGKQVAMLVPTTILAQQH 641 Query: 666 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 725 +D F +R +PV +E++SRFRS EQ+++L ++ +G++DILIGTH++ D+ F DLGL Sbjct: 642 HDTFSERMERFPVNVEVLSRFRSRTEQSKVLEKLEKGQVDILIGTHRITSDDITFDDLGL 701 Query: 726 LIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785 L+VDEE RFGV+ KE+++ MR +D LTLTATPIPRTL ++ G RDLS+I TPP R Sbjct: 702 LVVDEEQRFGVKTKEKLRKMREAIDTLTLTATPIPRTLQFSLLGARDLSLIETPPPNRQP 761 Query: 786 VKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQM 845 + T + +D V+R+AI+ E RGGQV++++N V+ I + AE + +VP R+ +GHGQM Sbjct: 762 INTEIHTFDEDVIRDAIVYETSRGGQVFFIHNRVKTIHEVAEMVRAMVPNVRVGVGHGQM 821 Query: 846 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA-DHFGLAQLHQLRGRVG 904 ELE VM DF +++ +VLV T+IIE G+DI ANT+II A +HFGL++LHQLRGRVG Sbjct: 822 SASELEDVMLDFVNEKLDVLVSTSIIENGLDISNANTMIINHAGEHFGLSELHQLRGRVG 881 Query: 905 RSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQS 964 RS +A+ LL P +T DA++RL+A+ DLG+GF +A DL+IRGAG LLG EQS Sbjct: 882 RSQRKAFCHLLVPSVHGLTDDARERLKAVEQFSDLGSGFDIAMRDLDIRGAGSLLGAEQS 941 Query: 965 GSMETIGFSLYMELLENAVDALKAGREPSLED----LTSQQTEVELRMPSLLPDDFIPDV 1020 G +E +G+ Y ++L+ AV L+ + D +T V++ + +P+ ++ D Sbjct: 942 GFIEDVGYETYHKILDQAVKELREEEFDDVFDGEAVPPGPETSVDVEEDAYIPESYLRDN 1001 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 RL+ Y+RI+ A E L ++ E+ DRFG P+P + LL ARLR ++L + K+ Sbjct: 1002 TERLNLYRRISDAPDETTLVDLLDEMEDRFGDAPEPVQNLLTGARLRLLGERLRMPKVVY 1061 Query: 1081 NEKGGVIEFAEKNHVNPAW-------LIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIE 1133 + + +P + L+ L + Y + ++ + + ++ Sbjct: 1062 KNERLFLYL-PSEDADPYFYDEVFHPLLEKLTLLDREYVMKDDVEGGLMRAIVQDVNTLD 1120 Query: 1134 WVRQFMREL 1142 Q L Sbjct: 1121 EALQVTESL 1129 >UniRef50_B6AN99 Transcription-repair coupling factor n=2 Tax=Leptospirillum sp. Group II RepID=B6AN99_9BACT Length = 1154 Score = 1014 bits (2622), Expect = 0.0, Method: Composition-based stats. Identities = 370/1157 (31%), Positives = 593/1157 (51%), Gaps = 50/1157 (4%) Query: 4 QYRYTLPVKAGEQRLLGELTGAACATL-VAEIAERHAGPVVLIAPDMQNALRLHDEI--- 59 + + K+ L + A + L + +IA +++ + + Sbjct: 15 LSPFFVAQKSHRPLNLMGIEEDARSLLPFLSHDLLSDKTLWIIAENIEKSHNRMSSLLAF 74 Query: 60 SQFTDQM--VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRV 117 F + L + E LPY+ SP I + R+ L L + V++ ++++ Sbjct: 75 QSFFGSNLSICFLPEEEVLPYEPESPPDFIRAERIHALNLLAQGKVDVVVTTWPAVVRKT 134 Query: 118 CPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE 177 P L + G+ + R AL L G+ V QV GE+A RGA+LDL+ + Sbjct: 135 LPPRLLSEVTWTLSAGEFIERTALADSLVRLGFLRVLQVSAPGEFAVRGAILDLYSPAHQ 194 Query: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEV 237 P RL++ DD + S+R FD+++Q++L ++ + +LP E+ ++ Sbjct: 195 DPVRLEWDDDILASIRSFDINNQKSLAKLSRVEILPGSEWIPPTGNVK------------ 242 Query: 238 KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQA 297 + +L G+E + P + + PL Y LL+ + ++ Sbjct: 243 NGALSDWLKDNPVTSLVPGVERFIPSIYEDAQSPL-DYGRKPVLLIEEPSIYRQKKKEWE 301 Query: 298 DTLARFENRGVDPMRPLLP-PQSLWLRVDELFSEL--KNWPRVQLKTEHLPTKAANANLG 354 + + D + LLP P+ +L + +L K +P + L Sbjct: 302 ERIREGWEALTDSDKVLLPSPEKAFLFEEAESPQLIEKLYPTIYLS-------------D 348 Query: 355 FQKLPDLAVQAQQKAPLDALRKFLETFDG-----PVVFSVESEGRREALGELLARIKIAP 409 F DL + ++ L + E V+ + G+R+ ELL I Sbjct: 349 FSDQEDLPFSSPVESLLQIEDSWAEGLSHLIGQTKVLSVFRTRGQRDRFQELLTNQGIPF 408 Query: 410 QRIMRLDEASDRG------RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRR 463 L + +R + ++G E GF N+ ++ E+ L + R Sbjct: 409 FPASGLQDIEEREPLNRSVVWTILGDVEKGFYIPSDNILVLSENFLF-RKRPEPRIHRAF 467 Query: 464 TINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPV 523 ++ L+ G+PVVHL+HG+G Y G+ + G I GE+ ++ Y + KLYVPV Sbjct: 468 ATATSIYRKDRPPLNEGEPVVHLQHGIGLYRGLKEIMVGSIPGEFFVVEYRDLEKLYVPV 527 Query: 524 SSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAF 583 L+ Y G L ++GG W+R RQK +++ ++ +L+D+YA+R G +F Sbjct: 528 DHADLLQPYRGPEGSTPTLDRIGGQTWNRTRQKVRKEIEKISQDLVDLYARRKTVSGHSF 587 Query: 584 KHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 643 D + F +SFP++ TPDQ A AV DM P MDRL+ GDVGFGKTE+AMRAAF Sbjct: 588 SSDLLLVREFENSFPYDLTPDQEDAWRAVCEDMEAPTPMDRLILGDVGFGKTEIAMRAAF 647 Query: 644 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK 703 AV + QVA+LVPTTLLA+QHY++F DRF+ +PVRI ISR S E +++ G+ Sbjct: 648 KAVADGYQVALLVPTTLLAKQHYESFLDRFSGFPVRICHISRMVSQAEIRATRKKLSLGE 707 Query: 704 IDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTL 763 IDILIGT L+ + F++LGLLI+DEE RFGV KE++K+ +VD+LTL+ATPIPRTL Sbjct: 708 IDILIGTTALISKETSFRNLGLLIIDEEQRFGVGQKEKLKSRYTSVDVLTLSATPIPRTL 767 Query: 764 NMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQ 823 M++SG+R +S I TPP R ++T + +D + EAI RE+ R GQV++++N V+ I Sbjct: 768 QMSLSGLRGISFIMTPPPGRKPIRTAILTFDRHRIHEAIDRELARDGQVFFIHNRVQTIS 827 Query: 824 KAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 + LA+L PE I + HGQM + +E VM F + + +LV T I+E+G+DIP ANTI Sbjct: 828 RMVHYLAKLFPEVPIGMAHGQMEDSRMEEVMEKFIQRHYRILVSTAIVESGLDIPAANTI 887 Query: 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGF 943 I+ RAD FG+++L+Q+RGRVGRS QAYA+ L P +T A+KRL+ + LG+G+ Sbjct: 888 IVNRADMFGISELYQIRGRVGRSGQQAYAYFLIPSESGLTDTARKRLKTLQDNTSLGSGY 947 Query: 944 ALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTE 1003 +A D+EIRGAG LLG +Q+G + +G LY+E++E A+ ++ EP L ++ Sbjct: 948 QIAMRDMEIRGAGSLLGHQQTGHIALVGLDLYLEMVEEAI---QSRIEPEAVPLAREEVR 1004 Query: 1004 VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDI 1063 ++L S P+D+I R+ FY+R++ AK E++ I+ E+ DRFG LP ++ L Sbjct: 1005 IDLGRESRFPEDYIEHPAQRIDFYRRLSLAKNMGEIDHIESEVSDRFGPLPRSSKGLFLA 1064 Query: 1064 ARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQ 1123 ARL+ + K G ++ ++ V++ + P + L K ++ + + Sbjct: 1065 ARLKFLSLKHGFSEVRVRDRELVVKPSFFGVFTPEKIQILTNKFEGRLWINPDSTFCLLG 1124 Query: 1124 DLSERKTRIEWVRQFMR 1140 S ++ V + Sbjct: 1125 SPSTFVNELDLVGHVLS 1141 >UniRef50_B8IZ90 Transcription-repair coupling factor n=3 Tax=Desulfovibrio RepID=B8IZ90_DESDA Length = 1179 Score = 1012 bits (2618), Expect = 0.0, Method: Composition-based stats. Identities = 402/1156 (34%), Positives = 611/1156 (52%), Gaps = 34/1156 (2%) Query: 6 RYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ 65 ++ + + E ++ E +G A +A A VVL+A D + ++ FT + Sbjct: 27 NFSTVLASKEGQVYIERSGMATRCRLAAEAFTQGRTVVLVARDREEYNSARALLTLFTPE 86 Query: 66 -----MVMNLADWE----TLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQR 116 ++ W TLP S + S+RL+ LY L + ++ V +L+ R Sbjct: 87 LSLADKSVSEPQWNSPCLTLPPLSQWQDRASWSARLAALYGLAQGRPRCIVCSVESLLLR 146 Query: 117 VCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGS 176 P F L ++KG + + L Q GY V V GE A RG +LD+FP G Sbjct: 147 HIPLDFFAARNLDLRKGSDYAPELLLDQAVEWGYERVPMVTRPGEMARRGDILDIFPTGH 206 Query: 177 ELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE 236 P RL+FF D +D +RVFD +SQR+L+ + + LLPA D ++ R + F Sbjct: 207 VKPVRLEFFGDTLDEMRVFDAESQRSLQGCDELVLLPASPLALDAKSLAAARERCDRMFA 266 Query: 237 VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQ 296 R E+ K G+ + P + P ++L + G+ +++ Sbjct: 267 EGRISENECYSFKKSLDGGGLGLLPGSVLASP-SLFEDWLPKDSLWLLPGESDSA--DAL 323 Query: 297 ADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQ 356 D + R PL P SL LR + + RV + + + +L + Sbjct: 324 RDGRLNLKERLEAADAPLPQPASLALRKSSQPAPWNTFQRVYAEPLVMGVEERGLDLPER 383 Query: 357 K----LPDLAVQAQQKAPLDALRKFLETFD---GPVVFSVESEGRREALGELLARIKIAP 409 + + Q P L L+ + +V S S R +L + I P Sbjct: 384 PLHSFIDLFPLPGAQDRPWQHLAAGLKEWKSSRRQIVLSFSSGRSRAKFLKLAEQDGIVP 443 Query: 410 QRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDT 469 + RG + ++ G ++ ++ E D+L + + + S R Sbjct: 444 ALRYAPE---QRGLFALVSPFRSGAELVWDDVLVLGE-DILYPKAEKTPRVSSRVFK--- 496 Query: 470 LIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLI 529 + + +L G +VH ++G+GR+AG+ L+ ++L++ Y+ KLYVP L LI Sbjct: 497 GLDSFDDLKPGDLLVHRDYGIGRFAGLHHLDLNAAANDFLLVEYSGRDKLYVPADRLGLI 556 Query: 530 SRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQ 589 R+ G L +LGG AW ++KA + + +AA+L+++YA R +GF + E Sbjct: 557 QRFKGTEGVEPALDRLGGAAWVAGKEKARKAIEKIAADLVEMYAYRKVTKGFRYDPPGEL 616 Query: 590 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH 649 Y F +F FE TPDQA+AI VL DM +P MDRLVCGDVGFGKTEVA+RAAF A Sbjct: 617 YHEFEATFGFEETPDQAKAIQDVLDDMDRPRPMDRLVCGDVGFGKTEVALRAAFRAASEG 676 Query: 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIG 709 +QVA+L PTT+LA+QHY FR R A +PV + ++SRF Q ++L A G+IDILIG Sbjct: 677 RQVALLCPTTVLAEQHYQTFRARLAGFPVNVGLLSRFVPRPRQKEVLKAAAAGQIDILIG 736 Query: 710 THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSG 769 TH++L SDVK +L LL++DEE RFGVRHKE++KA++ NVD+LTLTATPIPRTL ++MSG Sbjct: 737 THRILSSDVKLPNLTLLVLDEEQRFGVRHKEKLKALKKNVDVLTLTATPIPRTLQLSMSG 796 Query: 770 MRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERL 829 +R+LSII T P R V + V D V+R+ + REI R GQV+++YN V+ +++ AE + Sbjct: 797 IRELSIIETAPQDRKPVASAVLRKDDNVLRKVLEREIEREGQVFWVYNRVQGLERVAEYV 856 Query: 830 AELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERAD 889 LVP+AR+ + HGQM E ELE M+ F H +VLVCT+I+E+G+D P ANT+++++A Sbjct: 857 RGLVPDARVGMAHGQMSEAELEDTMHKFWHGELDVLVCTSIVESGLDFPRANTLVVDQAQ 916 Query: 890 HFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHD 949 FGL QL+QLRGRVGRS QAYA+ + P + +T A++RL I ++ LGAGF +A D Sbjct: 917 MFGLGQLYQLRGRVGRSDRQAYAFFVVPDAERLTAVAEERLRIILDMDYLGAGFQVAMED 976 Query: 950 LEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMP 1009 L +RGAG +LGE QSG M +G LY+E+LE AV LK E + +TE+ L +P Sbjct: 977 LRLRGAGNILGEVQSGHMCRVGLDLYLEMLEEAVGRLKGTPESLV-----SETELTLGLP 1031 Query: 1010 SLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQ 1069 + +P +I D RL YK + SA+ EEI + + DRFG P+ L + +Q Sbjct: 1032 AHIPASYIDDGRERLRCYKALTSAQGGAAREEIALSIRDRFGPFPEELANFLAVLDFKQF 1091 Query: 1070 AQKLGIRKLEGNEKGGVIEFAE-KNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSER 1128 +L ++K + + + + + + + V P ++ L P R+ P L Sbjct: 1092 LTELQVQKADVHREHVRLTWPDGQTAVQPERIVALAASMPG-ARMQPPAGLTLPLAKDMP 1150 Query: 1129 -KTRIEWVRQFMRELE 1143 ++ +RQ + ++ Sbjct: 1151 LAGGLDRLRQALEDIR 1166 >UniRef50_A6GBX4 Transcription-repair coupling factor n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GBX4_9DELT Length = 1243 Score = 1012 bits (2617), Expect = 0.0, Method: Composition-based stats. Identities = 405/1215 (33%), Positives = 616/1215 (50%), Gaps = 86/1215 (7%) Query: 8 TLPVKAGEQRLLGELTGAACATLVAEIAE--RHAGPVVLIAPDMQNALRLHDEISQFTD- 64 +++G ++ + G L+A P+V +APD A + +++ F Sbjct: 13 LTALRSGRRKRVLGAEGGYRGLLLARAMADPETDAPLVYVAPDDTTAQTVAADVAFFAGS 72 Query: 65 ---------------QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVP 109 Q V+ + + + PY SP + +R++ L +L + ++I+ Sbjct: 73 GEGASATDAGPVGSNQRVLTVPEIDVSPYGDVSPDPRSVGARMAALERLRAGEPELIILS 132 Query: 110 VNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALL 169 + +LM++ P + L R+ L +AGYR VD V + G +A RG ++ Sbjct: 133 LRSLMRKTIPAEAFAQLCRTWAREGELGREEAAAFLSAAGYRRVDVVGDPGCFAIRGGIM 192 Query: 170 DLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFP-----TDKAAI 224 D++ P RL+++ DEI+ +RVFD DSQR+L EV +I + P E T A+ Sbjct: 193 DVWVPLERFPARLEWWGDEIERIRVFDPDSQRSLREVRSIRVHPVRETVATGSRTTANAL 252 Query: 225 ELFRSQWRDTFEV-KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT--L 281 L + D EV + + G GI+ P+F + L + Y PAN Sbjct: 253 RLAVLELGDRIEVPSSATRQVIANLGAGVDFFGIDALTPVFH-DGLASVADYLPANARWY 311 Query: 282 LVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKT 341 L L ER AD L R V+ + P+ + ++L +L+ V + Sbjct: 312 LDEPEALVGLGERM-ADELDFEYRRAVEAKHLVAAPEDFFCTREQLREQLRGAAVVGARL 370 Query: 342 EHLPTKAANA------------NLGFQKLPDLAVQAQQKAPLDALRKFLETFD------- 382 + + N + + A + L + + Sbjct: 371 DLYDPEQTKGDRRGVIRVDLGRNAPLRAKLEAARGQKGGELLRPVVDHIRELGVHADATL 430 Query: 383 -----------GPVVFSVESEGRREALGELLARIKIAPQRIMRLD--------------- 416 VV + E L +L + P+ + + Sbjct: 431 GGALDPSERDPWDVVLVAPNTTHAERLTAMLRGYGLRPEGTSKQEREHSSGAGGAIELGG 490 Query: 417 -EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLA 475 E ++ G GF L ++ ES++ G R + RR + +L+ Sbjct: 491 LELQAPRLRVIAGTLSEGFASEGDRLLVVSESEIFGPVARREGRRRRRRK---AGVASLS 547 Query: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGG 535 +L IG VVH+ HGVGRY G+T L A G+ G+++++ YA KLY+PV + I RY Sbjct: 548 QLSIGDYVVHVVHGVGRYVGLTKLAAQGVPGDFVIVEYAKKDKLYLPVHRIGEIERYVSA 607 Query: 536 AEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCD 595 + L ++GG + +K VR +A ELL IYAQR A G AF + Y F Sbjct: 608 EAKAPKLDRMGGQTFQAKAKKIRSDVRQLAEELLQIYAQREAMTGHAFAPGGDMYAEFEQ 667 Query: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655 +FPFE TPDQA AI++V D+ MDRLVCGDVGFGKTEVA+RAAF KQVAVL Sbjct: 668 TFPFEETPDQADAIDSVQDDLSSQRPMDRLVCGDVGFGKTEVALRAAFRVAAAGKQVAVL 727 Query: 656 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 715 PTT+L QQHY F +R + +P+ + +++RF S ++ + LA + +G +D+++GTH+LL Sbjct: 728 APTTVLVQQHYLTFSERMSAFPLEVGVLNRFSSPADRKRTLAGIKDGTVDVVVGTHRLLS 787 Query: 716 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 775 DV+FK+LGL+I+DEE RFGV+ K+R K ++ +VD+LTLTATPIPRTL+M++ GMR++S+ Sbjct: 788 RDVRFKELGLVIIDEEQRFGVKQKDRFKKLKTSVDMLTLTATPIPRTLHMSLLGMREISM 847 Query: 776 IATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE 835 I T P RLAV+T++ + +V+ E I RE+ RGGQ++Y+ V I++ A R+ ELVPE Sbjct: 848 ITTAPVDRLAVRTYLTRHSDVVLEEGIRRELARGGQIFYVVPRVMGIEEHAVRIRELVPE 907 Query: 836 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 895 AR+ + HGQM LE+ M DF +VLV TTIIE+G+DIP ANT+ I RAD FGLAQ Sbjct: 908 ARVIVAHGQMPPEMLEQTMVDFVRHEADVLVSTTIIESGLDIPRANTMFIARADQFGLAQ 967 Query: 896 LHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGA 955 L+QLRGR+GRS +AY +L+ + ++ DA++RLEAI +LGAGF +A+ DLEIRGA Sbjct: 968 LYQLRGRIGRSKLRAYCYLMVASLERLSEDARRRLEAIQRHSELGAGFNVASQDLEIRGA 1027 Query: 956 GELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDD 1015 G+LLG QSGS++ IGF Y +L AV L+ EV +P+ LPD Sbjct: 1028 GDLLGRRQSGSIQAIGFEAYARILGEAVAELRGDPISQ-----ETDPEVAFDVPAFLPDT 1082 Query: 1016 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 ++ DV RL FY+R+++++ +E+ E+ EL DR+G LP AR + + ++L Sbjct: 1083 YVEDVGARLDFYRRLSTSRDADEVREVLEELHDRYGELPVEARHFGLMMACKSYGRRLRA 1142 Query: 1076 RKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFI----QDLSERKTR 1131 LE I + + ++P +GL RL + + + Sbjct: 1143 TALELRAMRFSIRLSPETPLSPEVALGLSDATDGRVRLAPGGERILATIPNRQGKDCSRQ 1202 Query: 1132 IEWVRQFMRELEENA 1146 +E + EL A Sbjct: 1203 LEVCEGVLAELATYA 1217 >UniRef50_C8P217 Transcription-repair-coupling factor (ATP-dependent helicase MFD) n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P217_ERYRH Length = 1138 Score = 1009 bits (2610), Expect = 0.0, Method: Composition-based stats. Identities = 363/1153 (31%), Positives = 605/1153 (52%), Gaps = 31/1153 (2%) Query: 3 EQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF 62 E++ G+ + L+ A LV ++ P+ +I + Q A L++EI Sbjct: 9 EKHELVKEYTQGKS-VFAHLSVVQEALLVLGSSKISKKPLFIIKENEQQASNLYNEIKHL 67 Query: 63 TDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 + V+ E+L ++ + + ++R+ L+++ + I ++++ P Sbjct: 68 DENANVVYYNHEESLRVEAIVQSEIMKANRIDALFKIINGDFDICITHAIASVRKLSPAE 127 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 L + +K G L +L+ GY V V + YA RG + D+F + E P R Sbjct: 128 VLKASIINIKTGDEWEPLQLARELERLGYTRVKYVEKPFTYAIRGGVCDVFSIQMEQPLR 187 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP 241 ++FFD E+DSLR FD+++QR+L VE + A + + I+ + E + Sbjct: 188 IEFFDVEVDSLRYFDIENQRSLSRVEEATIAFATDILLKENDIQEISNALTSKIEGIENN 247 Query: 242 EHIYQQVSKGTLPAGIEY----WQPLFFSEPLPPLFSYFPANTLLVNT-GDLETSAERFQ 296 + I++ K L ++ + L F ++ Y ++ +E + ++ Sbjct: 248 DLIHEMEQKRELLQMNQFDVTLYPLLSFWSNYATIYDYLKDANTYMSPIEAIERTLKQNA 307 Query: 297 ADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQ 356 D+ E + M ++ ++ + + ++ + + +TE + Sbjct: 308 LDSHTFIEEQY--EMNQMIFVSDIFESFERIKAKHTHREIFEYQTEG--------EVFIP 357 Query: 357 KLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD 416 V + + L+K E V+ +++ + + + +L + + + D Sbjct: 358 WHSANIVSESIEQTMKWLKK--EAITQKVIITLDEDTMEDFIKIMLQQG---VEYQVLTD 412 Query: 417 EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAE 476 + + G Y+ G GF+ N + ++L + R D+ + L++ Sbjct: 413 KPTSNGIYIDYGHITSGFILEDLNTVVYTANELYKYKKKMFRYDN--KFLKAESLSQLSD 470 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 L VVH ++G+G+Y G+TT E GI +++ + Y + +L+VP+ +L+ ++ Sbjct: 471 LDTLDYVVHRQYGIGKYMGITTKEIEGIHKDFMRILYRDGDELFVPLEQFNLVRKFMSRE 530 Query: 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596 + L KLG W + +++ + V DVA +L+ +Y+ R GFAF D E + F D+ Sbjct: 531 AASVRLSKLGTSTWQKNKERIKQDVADVADKLVTLYSTRMDASGFAFSPDTEYQKQFEDA 590 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 F +E T DQ AI+ + DM + + MDRL+CGDVGFGKTEVA+RAAF A +HKQV L Sbjct: 591 FEYELTQDQKTAIDEIKRDMERDVPMDRLLCGDVGFGKTEVAIRAAFKAFVDHKQVVFLC 650 Query: 657 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS 716 PTT+L+QQH ++R +++PV IE+++RF S KE+ +I+ V +GK+DIL+GTH++L Sbjct: 651 PTTILSQQHARTLKERLSDFPVTIEVLNRFVSDKEKNEIIQRVKDGKVDILVGTHRVLSR 710 Query: 717 DVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 776 DVKFKDLGLLI+DEE RFGV HKERIK + +VD+L+L+ATPIPRTL M++ G+R LS + Sbjct: 711 DVKFKDLGLLIIDEEQRFGVEHKERIKEFKVSVDVLSLSATPIPRTLQMSLIGLRSLSQL 770 Query: 777 ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 PP+ RL V T++ E + + + I +E+ R GQV+YL+N+VE I A +A V A Sbjct: 771 NMPPSNRLPVMTYIIEKNQKTINDIISKELNRDGQVFYLFNNVEQIYSVASVIANHVEAA 830 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 +A+ HGQM E+E VM F + NVLVCTTIIETGIDIP ANTII++ A FGL+QL Sbjct: 831 NVAVVHGQMERHEIEDVMIRFISKEINVLVCTTIIETGIDIPNANTIIVDNAHRFGLSQL 890 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 +Q++GRVGRS AYA+ + P+ + +T AQKRL+AI LG+G+ +A DL IRGAG Sbjct: 891 YQIKGRVGRSDRLAYAYFVVPNKRGLTELAQKRLQAIKEFTQLGSGYKIAMRDLTIRGAG 950 Query: 957 ELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 ELLG QSG ++T+G LY++LL+ A+ + +E+ L++ LP+DF Sbjct: 951 ELLGGNQSGFIDTVGIDLYVQLLKEAIAKRQGKEVIDVEEQERF----NLKVDGYLPEDF 1006 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076 D +L Y++I ++ +EL+ + DR+G LP+ + LL+ RL I+ Sbjct: 1007 TSDDGEKLDLYQQINQIQSIDELKHFNEMIDDRYGKLPNSVKMLLEKTRLELFLNDKRIK 1066 Query: 1077 KLEGNEKGGVIEFAEK--NHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEW 1134 + + F E+ + V+ L L+ ++ ++ + I + E Sbjct: 1067 SFKERVNKVELVFTEEYSSQVDGVHLFELISEKSSEIKIKYLNQ-TIIITMPMYTEWAED 1125 Query: 1135 VRQFMRELEENAI 1147 + + L+E I Sbjct: 1126 LVYILENLKEQQI 1138 >UniRef50_A1ZRM8 Transcription-repair coupling factor n=2 Tax=Bacteroidetes RepID=A1ZRM8_9SPHI Length = 1137 Score = 1009 bits (2609), Expect = 0.0, Method: Composition-based stats. Identities = 366/1168 (31%), Positives = 582/1168 (49%), Gaps = 98/1168 (8%) Query: 15 EQRLLGELTGAACATLVAEIAE-----RHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVM 68 E+ + L G+ + + + + +L+ D AL ++++ + + Sbjct: 29 ERVQVKGLVGSLDSVMASATYKIHTEANQRINHILVLHDRDEALYFYNDLQNLLGKKNIW 88 Query: 69 NLADWETLPYDSFSPHQDIISSRLSTLYQL----------------------PTMQRGVL 106 PY I R L ++ + ++ Sbjct: 89 FFPSSYKRPYKFMEVENANILERAEVLNRINQQISNPQVVSIDAGKANEENPTNQEGFMI 148 Query: 107 IVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRG 166 + + L+++V L + + G+++ + L L + + D V E G+++ RG Sbjct: 149 VTYPSALVEKVINKRSLLENTFTAEVGEKVDIEFLAEILHTYDFDKTDFVYEAGQFSIRG 208 Query: 167 ALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIEL 226 ++D+F ++ PYRL+FFDDE++S+R+FD +SQ ++E+V I ++P + + Sbjct: 209 GIVDIFSYSNDYPYRLEFFDDELESIRLFDPESQLSIEQVSQIAIIPNVQTKLVQEVR-- 266 Query: 227 FRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG 286 E + + L Y T+ V Sbjct: 267 -------------------------------ESFLNFVPNNTKVWLKDY--DATMDVIRK 293 Query: 287 DLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPT 346 A F+ + ++ P L+ +L + V+ Sbjct: 294 SFTKVANNFKEILEKSGNTQVIND------PDVLFETQASFEEKLLEFTTVEFGKRFH-- 345 Query: 347 KAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIK 406 ++ L + P + +D L++ ++ + +S + E L + + Sbjct: 346 FKSDKRLVQEAKPQPSFNKDFALLIDDLKER-QSQGYANFIAADSLRQVERLHVIFDELD 404 Query: 407 IAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTIN 466 + + + GFVD V + + ER R R R + + Sbjct: 405 ------------PNISFEALGVSLREGFVDHVNRFVCYTDHQIF-ERFHRYRAGKRHSKS 451 Query: 467 PDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSL 526 ++ L L+ G V H+++GVGR+AG+ +EA G E + L Y +D LYV + SL Sbjct: 452 KALTMKALKALNPGDYVTHVDYGVGRFAGLEKVEANGKVQEAVRLVYRDDDLLYVSIHSL 511 Query: 527 HLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 H IS+Y+G +HKLG W +++ ++V D+A +L+++YA+R + GFAF D Sbjct: 512 HKISKYSGKDSAPPKVHKLGSPEWETKKKRVKKRVLDIAEDLIELYAKRKSAPGFAFSQD 571 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 SF +E TPDQA+A V +DM Q MDRLVCGDVGFGKTEVA+RAAF AV Sbjct: 572 SFLQAELESSFIYEDTPDQAKATADVKADMEQNSPMDRLVCGDVGFGKTEVAIRAAFKAV 631 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 + KQVA+LVPTT+LA QHY F++R +P IE I+RF+++K+ L EV EGK+DI Sbjct: 632 YDGKQVAILVPTTILALQHYKTFKNRLEKFPCNIEYINRFKTSKQIKATLKEVNEGKVDI 691 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 LIGTH+++ DV+FKDLGLL++DEE +FGV+ KER+K MR NVD+LTLTATPIPRTL+ + Sbjct: 692 LIGTHRIVNKDVQFKDLGLLVIDEEQKFGVKTKERLKEMRVNVDVLTLTATPIPRTLHFS 751 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 + G RDLSII TPP R V T ++ V+R+AI E+ RGGQV++++N V++I A Sbjct: 752 LMGARDLSIIQTPPLNRQPVTTEQHTFNDEVIRDAISFELRRGGQVFFVHNRVKDIISIA 811 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 + +LVP+A + + HGQM +LE+ M F ++VL+ T IIE G+D+P ANTIII+ Sbjct: 812 NNVLKLVPDAHVGVAHGQMEGPKLEKTMMKFIEGEYDVLISTNIIEAGLDVPNANTIIID 871 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 A FGLA LHQ+RGRVGRS+ +AY +LL P + ++++RL A+ DLG GF +A Sbjct: 872 MAHTFGLADLHQMRGRVGRSNRKAYCYLLAPASTLLNVESRRRLSALEEFSDLGDGFKIA 931 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLT------SQ 1000 DL+IRGAG LLG EQSG + +GF +Y ++L+ A+ LK + L + Sbjct: 932 MRDLDIRGAGNLLGAEQSGFISDLGFEMYHKVLDEAIQELKETKFRELFESELAIKEIKT 991 Query: 1001 QTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTL 1060 +E + L+P++++ ++ RLS Y + + K EL + K+ + DRFG P L Sbjct: 992 DCVIETDLAILIPENYVTNITERLSLYTTLDNIKETEELNKFKISVQDRFGNPPSEVNDL 1051 Query: 1061 LDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH-----VNPAWLIGLLQKQPQHYRLDG 1115 ++ +LR +A++LG+ KL F +N +I LQ+ PQ RL Sbjct: 1052 IETVKLRWEAERLGMTKLTLKNGAMKGYFNSENDDYFKSDTFGKIIRYLQQNPQKTRLKE 1111 Query: 1116 PTRLKFIQDLSERKTRIEWVRQFMRELE 1143 + I I+ + ++ Sbjct: 1112 HKQKPIIIFAE--VNSIQQAISILSSIK 1137 >UniRef50_D1R5W0 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5W0_9CHLA Length = 1103 Score = 1009 bits (2608), Expect = 0.0, Method: Composition-based stats. Identities = 373/1125 (33%), Positives = 579/1125 (51%), Gaps = 95/1125 (8%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 P+ K G+ L+ EL A A + + + V+++ Q RL+ + Sbjct: 9 PKLLELQEAFKQGDPVLIEELWNAPKALIASLALQVTGKHVLILTGGSQEESRLYHDFPF 68 Query: 62 FTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQL-PTMQRGVLIVPVNTLMQRVCPH 120 F+ ++ WETLP ++ +P D + +R L Q+ T Q ++I + +Q + P Sbjct: 69 FSSAPLLEFPAWETLPSENIAPSPDTVGARYKALRQVSATFQPHIIISGLQACLQSLIPP 128 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 L +KKG+ D L +L+ GYR + GE+A RG ++D+FP+ S P+ Sbjct: 129 QNFDSLYLALKKGETFPFDTLIQRLNEMGYRRSAVAADKGEFAIRGGIIDIFPVASPDPF 188 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R++F+ D+I+S+R+FD QR+++ VE I + PA E + + Sbjct: 189 RIEFWGDDIESIRIFDPIGQRSIKTVEHIEITPAQEMELIQQS----------------- 231 Query: 241 PEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTL 300 L + Y T+++ L Sbjct: 232 --------------------------SKLSTILDYLGPQTIVIFDDLL------------ 253 Query: 301 ARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPT-------KAANANL 353 E+R + P + ++ LF ++ ++ + + + Sbjct: 254 -ALEDRYSSLLHICGSPTRSFQSIENLFEQIAPLQQIYWSRQPIEELTEVKLKSPKGKSF 312 Query: 354 GFQKLPDLAVQAQQKAPLDALRKFLETFDGPV--VFSVESEGRREALGELLA-------- 403 + P + +++L F V + E + + ++L Sbjct: 313 YSESAPMHTLAFSMFNKDLMAKRWLSPFIPLVDYLLPFRDEEQEVSGNDILENLAHIPKE 372 Query: 404 -----------RIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGE 452 Q+I + G G V L +I +++ Sbjct: 373 AHLHFLCASELEENTLKQKIAQKSIPLPTQTVYQNGYLSSGLVLAQEQLLVIPFTEVSHR 432 Query: 453 RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMT-TLEAGGITGEYLML 511 RR++ P + L G VVHL HG+GR+ G+ L G+ E+ ++ Sbjct: 433 YKLRRQKLRSTYHTPP---SDSYHLVPGDMVVHLNHGIGRFLGLEKKLNHNGVLSEFFLI 489 Query: 512 TYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDI 571 YA + KLYVP++ HL+++Y G +E+ +H LG W + +++ E + A +LL + Sbjct: 490 EYAENGKLYVPLNQAHLVTKYIGSSEDLPSMHTLGSARWKKTKERTQEAIVGYAKDLLQL 549 Query: 572 YAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVG 631 YA R+ K G + D Q F + FP+E T DQ AI ++ DM +MDRL+CGDVG Sbjct: 550 YAHRSLKAGLIYPSDSIDMQDFEEDFPYEETEDQLNAIASIKEDMQSTKSMDRLICGDVG 609 Query: 632 FGKTEVAMRAAFLAVDNH-KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAK 690 +GKTEVAMRAAF AV + KQVA+LVPTT+LA QHY+NF +R +N+PVRI ++SRFR+ K Sbjct: 610 YGKTEVAMRAAFKAVMDGHKQVALLVPTTVLAMQHYENFIERMSNFPVRIGVLSRFRTPK 669 Query: 691 EQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVD 750 E + L +VA+G IDILIGTH+L+ DV F DLGL+I+DEEHRFGV+ KE +K ++ VD Sbjct: 670 EIRETLEQVAKGSIDILIGTHRLISKDVVFHDLGLIIIDEEHRFGVKAKEHLKKIKMGVD 729 Query: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGG 810 +TL+ATPIPRTL M++ G RD+S+I TPP RL + T + E +V + A+LRE+ R G Sbjct: 730 CITLSATPIPRTLYMSLVGARDMSVINTPPQDRLPITTIISEPGDLVFKNALLRELSRDG 789 Query: 811 QVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTI 870 Q Y ++N VE I A ++ EL+P+AR+ +GHGQM E++ V + F ++LV TTI Sbjct: 790 QAYVIHNRVETIFGVASKIKELLPQARVVVGHGQMSADEIDSVFHAFKSGAADILVATTI 849 Query: 871 IETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRL 930 IE+GIDIP ANTI+I RAD FGLA L+QLRGRVGR + +AYA+ L P+ K++ A+KRL Sbjct: 850 IESGIDIPNANTILINRADQFGLADLYQLRGRVGRWNRRAYAYFLVPNLKSLPQLARKRL 909 Query: 931 EAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGR 990 A+A G G LA HDLEIRGAG +LG EQSG + IGF Y +LL + L+ Sbjct: 910 HALAEACGYGGGMKLAMHDLEIRGAGNILGTEQSGHVSAIGFHFYCKLLRRTIQTLQGEL 969 Query: 991 EPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRF 1050 + +T++E + LP+D++ +V+ R+ Y+R+ A +++E I+ EL DRF Sbjct: 970 SAGM-----VETKLEFHYDACLPEDYVNEVSLRMEIYQRLGEAIALSDVELIEQELKDRF 1024 Query: 1051 GLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHV 1095 G L + L+ + R+R A + G L+ ++ IE+ + + Sbjct: 1025 GPLVIQVQWLMALTRIRVFASQRGYTTLKFDKLAISIEWKKGKQI 1069 >UniRef50_C9RNX3 Transcription-repair coupling factor n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RNX3_FIBSS Length = 1132 Score = 1005 bits (2599), Expect = 0.0, Method: Composition-based stats. Identities = 360/1090 (33%), Positives = 571/1090 (52%), Gaps = 54/1090 (4%) Query: 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLAD 72 E + + + +VA + +++IA D ++A + + + V Sbjct: 24 NEAIHVNGASVPLASMMVANRFLKSPQNILVIAKDYRSAEVWVENLESMVGEEFVRFFPS 83 Query: 73 WETLPYDSFSPHQDIISSRLSTLYQLPT-MQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 PY+ P + ++ RL + + V++ P++ + ++ + ++ Sbjct: 84 LGLKPYEIKVPFEGVLEERLKFFRDVSHTEKPFVVVCPLDAFLMKLPEPGEIMRQVRTLR 143 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 G +L +LR G+ V GE++ RG ++D+ + P R++F+ DEI+S Sbjct: 144 VGDQLEPSSLRPWFLDHGFVEQPMVSGVGEFSIRGCIVDVNCLLYPHPIRIEFYGDEIES 203 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKG 251 +R FD+ SQR+LE++ I P EF ++ + Sbjct: 204 IRAFDIFSQRSLEQMTHIEFFPMGEFTVPESVMAGEECSVESL----------------- 246 Query: 252 TLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDL-ETSAERFQADTLARFENRGVDP 310 +W + L Y P +L+ L +A + ++ V Sbjct: 247 -------WWHRPHHQRLVASLLDYMPRASLVFEELSLLSETASKMYGAFRGAYDEARV-T 298 Query: 311 MRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAP 370 + P +W ++ EL L + N + + D A Sbjct: 299 DAGVAAPADIWFKIGELSRLFVGR--ASLDMTRVKVDDGNWHEMHMRPQDFTSNG-TDAV 355 Query: 371 LDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAA 430 + +F + G V ++ G L E+ + I IG Sbjct: 356 AKEIEEFYDK-GGRVYVMAQTLGGVNRLREIFDGLPIE---------------DYFIGNL 399 Query: 431 EHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 GF N+A + ES +L + R+ + L+ L+ G V H +HG+ Sbjct: 400 SEGFWLEDDNVAFLTESRILNRHANKARKHKIAGSVTNALMVE--SLNRGDLVAHEDHGI 457 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW 550 GRY G+ +E G + +L Y +L PVS L I R + L +LG W Sbjct: 458 GRYLGLVRVEVNGGMVDCALLEYDGGDRLKFPVSDLQKIERLDRPEDIETKLDRLGSKTW 517 Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 +++ +KV +A +L+++YA+R EGF F D + F DSF ++ TPDQ +A Sbjct: 518 ENIKKRVKQKVIQIARDLVELYAKRELVEGFGFPPDGNMQKEFEDSFEYDPTPDQLRATA 577 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 + DM MDRL+CGDVGFGKTEVAMRAAF V ++KQVA+LVPTT+LA QHY+NF Sbjct: 578 DIKRDMESHRPMDRLICGDVGFGKTEVAMRAAFKCVSSNKQVAILVPTTILAAQHYENFC 637 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 +RFA +PV+I +++R++SAKE+ +I E+A G ++I+IGTH LL + +FKDLGLLI+DE Sbjct: 638 ERFAAYPVKIALMNRYKSAKEKKEIFKEIAAGTVNIVIGTHALLSNKSEFKDLGLLIIDE 697 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 E +FGV+ KE+++ +R VD L+++ATPIPR+L+++M+G+RD+S+I TPP RL V+T + Sbjct: 698 EQKFGVKQKEKLRQLRLAVDTLSMSATPIPRSLHLSMTGVRDISLINTPPINRLPVETKL 757 Query: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 + D V++ AIL E+ RGGQV+ + + V+ I K E + + PEA++A+ HGQM + EL Sbjct: 758 MQRDDEVLKNAILDELARGGQVFVVNDRVQTIYKLTEDIEAMAPEAKVAVAHGQMEDHEL 817 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 ERVM+ F ++F++LV T+IIE+G+D+P ANTIII A HFG++QL+Q+RGRVGRS A Sbjct: 818 ERVMDAFLSRKFDILVSTSIIESGLDVPNANTIIIMNAHHFGISQLYQMRGRVGRSSVLA 877 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 A+L+ P ++ ++ +RL+A+ DLG+G+ LA DLEIRGAG LLG+EQ G + + Sbjct: 878 KAFLVIPQRGEISQESMRRLKALEQFTDLGSGYQLAMRDLEIRGAGNLLGQEQHGFIAEV 937 Query: 971 GFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI 1030 GF Y+ L+ AV+ L+ G Q VE+ + + LP+D++ D TR+S Y+RI Sbjct: 938 GFETYVRLVREAVEMLRGG-----ALEKPIQPRVEIGVDAYLPEDYVEDGLTRISLYQRI 992 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFA 1090 A T+ +++ I+ EL DRFG +P PA+ LL + L A +L I+ L + V FA Sbjct: 993 ARITTQADVQNIESELQDRFGPVPTPAKMLLLVTELGLLAGRLRIQGLALRKGVIVATFA 1052 Query: 1091 EKNHVNPAWL 1100 E +P L Sbjct: 1053 ETPSPDPRVL 1062 >UniRef50_A9NE83 Transcription-repair coupling factor (Superfamily II helicase) n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NE83_ACHLI Length = 1143 Score = 1000 bits (2585), Expect = 0.0, Method: Composition-based stats. Identities = 363/1141 (31%), Positives = 587/1141 (51%), Gaps = 41/1141 (3%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLP 77 ++ + T+++ + + ++ P++ A + +D +S D+ V+ +TL Sbjct: 23 FKGVSHSYLQTMLSLRYDISNKNIFVVLPNLYEAQKYYDTLSSIIDESKVLFYPMDQTLT 82 Query: 78 YDSFSPHQDIISSRLSTLYQLPT-MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 + + RL TL +L + ++I ++ R + Q Sbjct: 83 SMMALGSPEFKNERLFTLRKLLQADDKYIIITTQEGILHRQLKPEDYERSVKKISVNQDY 142 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 L +L GY+ V GE++ RG++LD++ + PYRLDFF D ++S++ FD Sbjct: 143 DLTDLTKKLIYDGYQFNYTVERPGEFSIRGSILDIYTHDYKDPYRLDFFGDTLESIKTFD 202 Query: 197 VDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF-------EVKRDPEHIYQQVS 249 V +Q+++ + +I++ P +E E + F + + E + Sbjct: 203 VQTQKSMNHITSIDIAPLNELFYTDELKEQALEKISKYFSGFKLSEKEDKKLETDLMHIE 262 Query: 250 KGTLPAGIEYWQPLFFSEPLPPLFSYF-PANTLLVNTGDLETSAERFQADTLARFENRGV 308 + + + FF++ + + + P + +LV++ +E + E D L Sbjct: 263 ERKRMDSLSMYIE-FFNDEVTTILDFSNPYDLILVDSYKMELNEETTYQDLLTYSHTMQG 321 Query: 309 DPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQK 368 + L +V KN Q+ + L + Sbjct: 322 EAFIG------LNFKVKLKELLKKNHLSFQIYSVSDKPSTDLGVLDVD-----PFVGHLE 370 Query: 369 APLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIG 428 + + ++ ++ S ++ E + E L KI+ +++ D L+ Sbjct: 371 QLILFINEY---NGFNILISTKTMVSFERIKEHLTNHKISY----SVNQFKDAMVVLVEE 423 Query: 429 AAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEH 488 F+D ++ E +L + + + R IN IR+++EL G VVH + Sbjct: 424 DLPGSFIDLNHKFIILTEDTILDTK-KKAKVRYRSVINQAVKIRDISELQNGDYVVHYDF 482 Query: 489 GVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 548 G+G+Y G+ T+ G +YL + Y D LYVP + L+ +Y + L KL Sbjct: 483 GIGQYIGLKTMTLSGDKRDYLHIVYDKDEALYVPTDQIDLVLKYKSYDQVKPKLSKLNAK 542 Query: 549 AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 608 WS+ + + +K++D++ LL++YA+R EG+ F + F F ++ T DQ +A Sbjct: 543 QWSKTKAQVKQKIKDLSDRLLNLYAKRHQAEGYQFSPRTDMLTSFEKDFNYDETIDQQKA 602 Query: 609 INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDN 668 I+AV DM MDRL+ GDVG+GKTEVA+RAAF AV + KQVA LVPTT+LA+QHY Sbjct: 603 IDAVFEDMESSKPMDRLIAGDVGYGKTEVALRAAFKAVVDAKQVAYLVPTTVLARQHYLT 662 Query: 669 FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 728 F+DRF + + ++SR+ S +EQ ++L ++A+G ID++IGTH+LL D+ FKDLGL I+ Sbjct: 663 FKDRFEKYGGSVALLSRYVSKREQKEVLEKIAKGYIDVVIGTHRLLSDDIVFKDLGLFII 722 Query: 729 DEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 788 DEE RFGV+HKE+IK ++ NVD LTL+ATPIPRTL MAM G++DLS+I TPP R V+T Sbjct: 723 DEEQRFGVQHKEKIKEIKVNVDTLTLSATPIPRTLQMAMYGLKDLSMIDTPPLNRYPVQT 782 Query: 789 FVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRER 848 +V E +++EAI RE+ RGGQV+YL+N+ E ++ +L +LVP ARI HG+M + Sbjct: 783 YVVERQPALIKEAIDRELSRGGQVFYLFNNTERMEAQVLKLQQLVPNARITYAHGKMTKN 842 Query: 849 ELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH 908 +E ++ F + F++LV TTIIETG+DIP NT+II ADH GLAQL+QLRGRVGRS Sbjct: 843 RIEDTLSRFVEKEFDILVSTTIIETGVDIPNTNTLIIHDADHLGLAQLYQLRGRVGRSDR 902 Query: 909 QAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSME 968 AYA+L+ K + +A+KRL I DLG+GF +A DL IRGAG++LGEEQSG ++ Sbjct: 903 IAYAYLMFDGYKDVNDEAKKRLSVIEDFTDLGSGFKIALRDLGIRGAGDILGEEQSGFID 962 Query: 969 TIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1028 ++G LYM+LL+ + + T ++ +P +I R+ +K Sbjct: 963 SVGMDLYMKLLDEVM-------TGKAYESPKTDTVDQVFSKRHIPPTYINHDPVRIEIHK 1015 Query: 1029 RIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK--GGV 1086 RIAS +LE++K EL+DRFG + T + ++ ++GI K + V Sbjct: 1016 RIASLNKMQDLEDLKQELLDRFGPIDIDLMTYMYEKLYKKLGHQVGIEKTVHEKDFVKMV 1075 Query: 1087 IEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENA 1146 I + ++ L+ + K + RL G +R ++S + W+ EL E Sbjct: 1076 ISLEKSELIDGMRLLYVASKSKMNIRL-GQSRGHVEINMSTKHETKHWL-YLACELLEMY 1133 Query: 1147 I 1147 I Sbjct: 1134 I 1134 >UniRef50_D2R0K5 Transcription-repair coupling factor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R0K5_9PLAN Length = 1087 Score = 999 bits (2584), Expect = 0.0, Method: Composition-based stats. Identities = 371/1152 (32%), Positives = 585/1152 (50%), Gaps = 106/1152 (9%) Query: 4 QYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT 63 + E + + G++CA L A +A PV+ + P + A L +I+ F Sbjct: 28 FAEVVAAMSRHEPATIDGVWGSSCALLAAALASADNSPVIAVLPTQREADDLAIDIALFR 87 Query: 64 DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ---------RGVLIVPVNTLM 114 Q ++ L +E+ D RL TL +L + + +++ +++L+ Sbjct: 88 SQGILPLPSFESAIVAELGRD-DAFGPRLRTLKELLVARENPRAAATLQQLVVTSIHSLL 146 Query: 115 QRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPM 174 Q + L + ++K + L D L GY V GE+ RG ++DLF Sbjct: 147 QPMPQREVLAASSRRVRKQESLEIDPFLRWLVEHGYEATTSVQLPGEFCHRGGIIDLFAH 206 Query: 175 GSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDT 234 + P R++ FDDE++S+R FDV +QR+L ++ + + Sbjct: 207 DWQRPARIELFDDEVESIRQFDVATQRSLGALDWVEIT---------------------- 244 Query: 235 FEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANT--LLVNTGDLETSA 292 + L G+ + Y P N+ LL + L Sbjct: 245 ------------AIPAANLAGGV--------------IADYLPPNSRILLFSPDRLSDEG 278 Query: 293 ERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN 352 A + A + + V E+ S L ++ + + Sbjct: 279 RALHARSTAEAQ----------------LMSVAEVLSSLSSFGIATADGIAAGSLGVPWH 322 Query: 353 LGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRI 412 + + + + D L D V+ +E + L E+ A +A Sbjct: 323 MPVESVEQFS--GDLTKVRDQLGDL--AGDHEVMIITPTEAEVQRLREIFATTSLAAT-- 376 Query: 413 MRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIR 472 +IG GF L +I +L R I Sbjct: 377 --------GRLSYVIGTLREGFRVPDEKLIIITGGELF----HRGELRRLPRRRLGKAID 424 Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 + +L G VVHL HG+GR+AG+ LE G + E+L + + ++YVP + L+ +Y Sbjct: 425 SFLDLREGDLVVHLAHGIGRFAGIKLLERGETSEEHLEIEFDGGTRIYVPAVRIDLVQKY 484 Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 GG + L K+GG W + ++ A V D+A E+L++ A R+A+ G AF D E + Sbjct: 485 VGGTKTRPSLAKIGGKTWLKQKKAAESAVADLAVEMLELQAMRSARPGIAFSADSEWQKE 544 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F +SFPF+ T DQ +I ++ +DM + MDRL+CGDVGFGKTEVAMRAAF AVDN QV Sbjct: 545 FDNSFPFQETVDQLTSIASIKADMQRARPMDRLLCGDVGFGKTEVAMRAAFKAVDNGYQV 604 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 AVLVPTT+LA+QHY +F +R A +P I +SRF +++E+ + L + GK+DI++GTH+ Sbjct: 605 AVLVPTTILAEQHYRSFIERMAEFPCDIAKLSRFCTSQEEREALKGIKSGKVDIVVGTHR 664 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 L DV F +LGL+I+DEE RFGV KER+KA++A VD+LTL+ATPIPRTL+M++ G+RD Sbjct: 665 LASQDVDFHNLGLVIIDEEQRFGVDVKERLKALKATVDVLTLSATPIPRTLHMSLVGVRD 724 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 832 +S + +PP R+ V+T V+ +++ ++R A+LRE+ RGGQ+Y+++N V +I+ A RL ++ Sbjct: 725 ISNLESPPEDRVPVETSVKRWNNDLIRTAVLRELNRGGQIYFVHNRVNDIEIIARRLNQI 784 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 VPEA + IGHGQM E ELE+VM DF +F++L+ TTI+E+G+DIP ANTI I A+ +G Sbjct: 785 VPEASLRIGHGQMNETELEQVMVDFVAGKFDLLLATTIVESGLDIPNANTIFINEAERYG 844 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 LA LHQLRGRVGR ++A+ +LL K++T +A +RL AI ++GAGF ++ DLEI Sbjct: 845 LADLHQLRGRVGRYKNRAHCYLLIDSNKSITPNAARRLRAIEEFSEMGAGFQISMRDLEI 904 Query: 953 RGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLL 1012 RGAG LLG +QSG + +G+ LY +LLENAV +L+ ++ L + L Sbjct: 905 RGAGNLLGTQQSGHIAAVGYELYCQLLENAVRSLQ-----RQPPKQQLAVDLNLPGEAFL 959 Query: 1013 PDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 P D++ D+ ++ Y+R++ + EL + + EL+DRFG P P LL + L+ A Sbjct: 960 PSDYVDDMRLKIDLYRRLSRVGSPTELADFRSELVDRFGEPPPPVEHLLMLTGLKIDAML 1019 Query: 1073 LGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRI 1132 + + ++ V+ P L L + Q RL L ++ Sbjct: 1020 WSVSSIYIEDQFVVLRGDA-----PVRLAQLAKTQKGRLRLVDER--HIYLPLPKKSMPT 1072 Query: 1133 EWVRQFMRELEE 1144 + + ++ + + Sbjct: 1073 AELYELIKTMLQ 1084 >UniRef50_B2GL97 Transcription-repair coupling factor n=3 Tax=Actinomycetales RepID=B2GL97_KOCRD Length = 1254 Score = 999 bits (2583), Expect = 0.0, Method: Composition-based stats. Identities = 397/1185 (33%), Positives = 587/1185 (49%), Gaps = 89/1185 (7%) Query: 33 EIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMNLADWETLPYDSFSPHQDIISSR 91 AE HA ++ + + A L + + + + N WETLP++ SP D + R Sbjct: 69 SAAEAHAPVLLAVTATGREAEELQAALGSYLPSEQIANFPSWETLPHERLSPRSDTVGQR 128 Query: 92 LSTLYQLPTMQR-----GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLD 146 LS L +L V++ PV +++Q V + ++ GQ L +L Sbjct: 129 LSVLRRLERTDPSEQPLRVVVAPVRSVLQPVVA-GLGQMEPVTLRTGQDYDFQQLVVELA 187 Query: 147 SAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEV 206 A Y VD V GE+A RG ++D+FP + P R +FF DE+D +R F V QRTL Sbjct: 188 GAAYSRVDMVTRRGEFAVRGGIIDVFPPTEDHPVRAEFFGDELDEMRWFAVADQRTLTTA 247 Query: 207 EA---INLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPL 263 E I P E + + ++++ G G+E PL Sbjct: 248 EHPSVIVAPPCRELLITPSVQSRAAKLKEQL----PGGREMLERIAGGQYVEGMESLAPL 303 Query: 264 FFSEPLPPLFSYFPAN--TLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSL- 320 E L + S PA T+++ + A A P L Sbjct: 304 LADEMLQ-VMSLLPAGSMTVVLEPEKVRARAHDLVATNEEFLMAAWDSASGGSEAPLDLN 362 Query: 321 -----------------WLRVDELFSELKNWPRVQLKTEHLPTKA--------------- 348 + + E+ L A Sbjct: 363 AALDTDDDAARTLSSGSFHTIAEVRDLALERSVGWWSVTGLNVNAVTTSQMDADTSDEEV 422 Query: 349 -----ANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLA 403 L A L L + D +V + G + L ELL Sbjct: 423 HLADTDADTLTVTAREPTRFSGDVPAVLSFLGERARE-DWRIVLVTDGPGPLQRLSELLH 481 Query: 404 RIKIAPQRIMRLDEASDRG-RYLMIGAAEHGFVDTVRNLALICESDLLGER-VARRRQDS 461 + R +D+A G L A GFV + +AL+ E+D+LG R + Sbjct: 482 GADVPAARYDSVDDAPQPGLVELTTARAGRGFVIEGQRIALLTEADVLGRSSTYDNRAER 541 Query: 462 RRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGI---------TGEYLMLT 512 + + L G VVH +HG+G++ + G EYL+L Sbjct: 542 KLPQRRKRNQVDPLALQKGDYVVHEQHGIGQFIELVQRPIAGAMTAPGQPKPVREYLVLE 601 Query: 513 YA------NDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAA 566 YA +L+VP L +S Y G E L K+GG W++ ++ A + V+++A Sbjct: 602 YAASKRNGPRDRLFVPTDQLDQVSTYVG--GEAPSLSKMGGADWNKTKRSAKKAVKEIAN 659 Query: 567 ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLV 626 EL+ +Y+ R A +G +F D + +FP+ TPDQ I+ V +DM +P+ MDRL+ Sbjct: 660 ELIRLYSARMASKGHSFGPDTPWQRELEQAFPYIETPDQLTTIDEVKADMERPIPMDRLI 719 Query: 627 CGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRF 686 GDVG+GKTEVA+RAAF AV + KQVAVLVPTTLLAQQH + F +RF+ +PVR+ +SRF Sbjct: 720 SGDVGYGKTEVAVRAAFKAVQDGKQVAVLVPTTLLAQQHSETFAERFSGFPVRLATLSRF 779 Query: 687 RSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMR 746 ++AKE + + G +D++IGTH+LL +++FK+LGL+I+DEE RFGV HKE++KAMR Sbjct: 780 QTAKESKATMEGLRSGAVDVVIGTHRLLSKEMQFKNLGLVIIDEEQRFGVEHKEKLKAMR 839 Query: 747 ANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREI 806 +VD+L ++ATPIPRTL M+M+G+R+ S +ATPP R V T+V Y + V AI RE+ Sbjct: 840 TDVDVLAMSATPIPRTLEMSMTGIRETSTLATPPEERHPVLTYVGPYTNKQVSAAIRREL 899 Query: 807 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLV 866 +R GQV++++N V I+ A+ LAELVPEARIA+ HGQM E LE+++ DF ++F+VLV Sbjct: 900 MREGQVFFIHNRVSTIEAQAKELAELVPEARIAVAHGQMTESRLEQIIVDFWEKKFDVLV 959 Query: 867 CTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDA 926 CTTI+ETG+DI ANT+I++ AD +GL+QLHQLRGRVGR +AYA+ L P K ++ A Sbjct: 960 CTTIVETGLDIANANTLIVDHADRYGLSQLHQLRGRVGRGRERAYAYFLYPAEKPLSETA 1019 Query: 927 QKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDAL 986 +RL+A+A+ +LG+G LA DLEIRGAG LLG EQSG + +GF +Y+ L+ AV Sbjct: 1020 LERLKAVAAHNELGSGMQLAMKDLEIRGAGNLLGGEQSGHIAGVGFDMYLRLVGEAVAEY 1079 Query: 987 KAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVEL 1046 + ++ + ++EL + + LP D++P RL Y+ IA+A TE + E EL Sbjct: 1080 RGDQDTGP-----AEMKIELPVNAHLPHDYVPGERLRLEAYRTIANAATEEAVAEAGEEL 1134 Query: 1047 IDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQK 1106 DR+G LP P LL++ARLR +A+ G+ + AE L + Q Sbjct: 1135 TDRYGPLPTPVENLLEVARLRIRARAAGLTDVATQGTMVRFSPAELTESRQMRLTRMYQG 1194 Query: 1107 QPQHYRLDGPTRLKFIQDLSERK---------TRIEWVRQFMREL 1142 R+ I + + W R+ + + Sbjct: 1195 AQVRPVPGTDERMVLIPKPKTARIGGKDLVDGDILAWAREVLDAI 1239 >UniRef50_A4E9V3 Putative uncharacterized protein n=3 Tax=Collinsella RepID=A4E9V3_9ACTN Length = 1210 Score = 999 bits (2582), Expect = 0.0, Method: Composition-based stats. Identities = 335/1125 (29%), Positives = 546/1125 (48%), Gaps = 56/1125 (4%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMN 69 + AGE L ++ + + A R P V I A R ++ + V Sbjct: 23 LDAGEDVTLA-VSQSGRTLMAAAQFARRPRPTVYIVSGEDAADRAARSLAAYVGLAHVCR 81 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 + + P+ +P +++ R L ++ +++ L++ V P + + Sbjct: 82 FPERKDYPWREQAPDDAVVAQRCEALGRIVRGDNCIMVASARALLRCVPPVESRYWESTT 141 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 G+ + D + +L GY + G + G +++FP + P R++FF DEI Sbjct: 142 FAVGEEIPFDEVPQRLVGMGYTNAGAADAPGLFRVHGDTVEVFPAQEKAPVRIEFFGDEI 201 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVS 249 D +R + +T+ ++I + P E A+ + + + V Sbjct: 202 DRIRRMVSSTGQTIGNEDSIEIFPCRELALTDEAVHNMHVALYRASQDDSKLAALLEMVD 261 Query: 250 KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGD--LETSAERFQADTLARFENRG 307 + ++ + P+ + + + PL ++++ + ++ E Sbjct: 262 ARIVTPELDRFLPVMYGQTVSPLAHVSGKALVVLSEPRSLFDDCLRAYEDIEARAGEAGI 321 Query: 308 VDPMRPLLPPQSLWLRVDELFSEL------------------------------------ 331 + Q L + + + Sbjct: 322 DRLDGLYVRAQQLDFGAQQRLNYVSLIRAGGAVTAELKIEQPAIAGSDNRFMTRVQEVVG 381 Query: 332 KNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVES 391 K + V + ++ G + + + + + Sbjct: 382 KRYACVFAIPDRGARESMELTFGDEGITFEESLTAAPENAGVIGERVRVAAADSADRAAR 441 Query: 392 EGRREALGEL---------LARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLA 442 + A+ E L + S + A G V NLA Sbjct: 442 QDAHAAIRERKADALNARSLEAGAAQAAAGAAVPTISRGRVTFVDAALPQGVVVPDANLA 501 Query: 443 LICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAG 502 + +DL R+ R SRR ++ + G VVH HG+ ++ + E G Sbjct: 502 VFSIADL-NARMDANRARSRRKVDITQITFPF---KPGDYVVHATHGIALFSEIARQEVG 557 Query: 503 GITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVR 562 G +Y +L YA+ KLYVP+ + I+RY G + L +L W+RA KA + + Sbjct: 558 GKERDYFLLEYADGDKLYVPLEQVDRITRYVGPDGDKPRLTRLNTADWTRATNKARKNAK 617 Query: 563 DVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAM 622 +A +L+D+Y +R++ G A D + +SFP++ T DQ +AI + +DM P M Sbjct: 618 KLAFDLVDLYTRRSSITGIACPPDTPEQIEMEESFPYDETRDQLEAIADIKADMEAPKPM 677 Query: 623 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM 682 DRL+CGDVGFGKTEVA+RAAF VD+ +QV VL PTT+LAQQHY+ F +RFA + + +E+ Sbjct: 678 DRLLCGDVGFGKTEVALRAAFKCVDSGRQVMVLCPTTILAQQHYETFFERFAPFGLEVEV 737 Query: 683 ISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERI 742 +SRFR+ +Q + L AEG ID+LIGTH+LL +DV K+LG++I+DEE RFGV+HKE++ Sbjct: 738 LSRFRTPAQQKRALKAFAEGTIDVLIGTHRLLSADVNPKNLGMVIIDEEQRFGVQHKEQL 797 Query: 743 KAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAI 802 K +R +D+LTL+ATPIPRT+ MA SG+RD+S+I TPP R V V EYD VV AI Sbjct: 798 KNLREQIDVLTLSATPIPRTMQMATSGVRDMSLITTPPTGRRPVIVHVGEYDPDVVSAAI 857 Query: 803 LREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRF 862 E+ RGGQVYY+ N V+ I A R+ E PEAR+ + HG+M RE+E VM +F ++ Sbjct: 858 RLEVGRGGQVYYVSNRVKTIDDAVARVHEAAPEARVGVAHGKMSPREVEDVMIEFATKKI 917 Query: 863 NVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAM 922 +VL+ TTI+E+GID TANT+IIE + GLAQL+QL+GRVGRS QAYA+ + P + Sbjct: 918 DVLIATTIVESGIDNATANTLIIEDSQRLGLAQLYQLKGRVGRSATQAYAYFMFPGELPL 977 Query: 923 TTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENA 982 T +A RL A++ +DLG+G +A DLEIRGAG L+G EQ G++ ++GF L+ ++L A Sbjct: 978 TEEATARLTALSEFQDLGSGMRIAMRDLEIRGAGSLMGAEQHGNLSSVGFDLFTQMLGQA 1037 Query: 983 VDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEI 1042 V + + +E + + L L ++++P V+ R+ Y+++A+A+ ++E+ Sbjct: 1038 VAEARGDDDAGVE---AASVGINLPADYFLSEEYLPAVDQRVLVYRKLAAAEDLESIDEV 1094 Query: 1043 KVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVI 1087 + E G LP L + AR+R + ++LG+ + + Sbjct: 1095 QEETEAAHGELPLAGLNLFNRARIRIRGERLGLESVTLSGGRITF 1139 >UniRef50_Q72AT7 Transcription-repair coupling factor n=5 Tax=Desulfovibrionaceae RepID=Q72AT7_DESVH Length = 1160 Score = 998 bits (2581), Expect = 0.0, Method: Composition-based stats. Identities = 383/1148 (33%), Positives = 612/1148 (53%), Gaps = 40/1148 (3%) Query: 23 TGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-----VMNLADWE--- 74 +G A A + V++ D + ++ F+ + WE Sbjct: 24 SGMATAARLGNAVLDAGRSAVMVVRDAEELALARGLLTLFSPDASAGDSPLVKPRWESRW 83 Query: 75 -TLP-YDSFSPHQDIISSRLSTLYQLPTMQ-RGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 +P + + ++D +SR++ L+ L + +++ V+ + ++ P H L + Sbjct: 84 VVMPQHPLGARNRDAWASRMAALFALGQKRVPQGVLITVDNFLSKLPPADLFASHELTLA 143 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 G ++ + + Q G+ V V GE A RG ++D++P G E P RL+FF + ++ Sbjct: 144 CGDEMAPELVLEQAVDWGFDRVQMVSRPGEIAVRGDIVDIYPPGYERPLRLEFFGETLEE 203 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKG 251 +R+FD +QR+L +++ + LLP ++W+ F E Y + +G Sbjct: 204 IRLFDASNQRSLGKLDEMVLLPVSPVVLSAELRSKATARWKRLFSKGMLTEEQYAGLLRG 263 Query: 252 TLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG--DLETSAERFQADTLARFENRGVD 309 G E P + E + + P + + G +L + E Q + A F+ + + Sbjct: 264 IERHG-EGLMPGAYYEAPTVVEEWLPRDAAWILPGRKELVDAVEAAQQNWEALFDKQAEE 322 Query: 310 PM---------RPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD 360 R P + L+ D E V+ +P + + + PD Sbjct: 323 GGARQPRGLVLRDAAPVRQLYEEKDSAGFE-PLVMGVERTGVDMPERKLHGFVDLFPAPD 381 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 A +A + L +F+ T V+ +E R +L + I P + Sbjct: 382 -ARDRPWQALVAGLHRFVATH-ARVLLCFGNERGRRKFLKLAEQDGITPTLR---YDPKG 436 Query: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 RG ++ G +I E D+L + R + + + L G Sbjct: 437 RGLMAVVAPYRAGVELAWDGTLVIGE-DVLQPKTDRSARVASGAFR---GLDKHEGLQPG 492 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 +VH ++GV R+ G+ ++ GG+ ++L+L YA D +LY+PV L L+ R+ G + Sbjct: 493 DLLVHRDYGVARFVGLERMDLGGVGNDFLLLEYAGDDRLYLPVDRLSLVQRFKGADDTKP 552 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 L +LGG AW ++ KA + + +AA+L+++YA R +G+ + E Y+ F SF FE Sbjct: 553 SLDRLGGGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPIGELYREFEASFGFE 612 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 TPDQA+AI VL DM +P+ MDRLVCGDVGFGKTEVA+RAAF A +QVA+L PTT+ Sbjct: 613 ETPDQARAIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALLCPTTV 672 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LA+QHY FR R A +PV + M+SRF S ++QT++LA A+G +DILIGTH+LL DV+ Sbjct: 673 LAEQHYQTFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAAKGHVDILIGTHRLLSDDVRL 732 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 +LGLL++DEE RFGVRHKE++K R NVD LTLTATPIPRTL ++MSG+R+LS+I T P Sbjct: 733 PNLGLLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLSMSGIRELSVIETAP 792 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 R V T + E D ++ + REI R GQV++++N V+ +++ E + +LVP+AR+ + Sbjct: 793 PERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERTTEYVRKLVPDARVGM 852 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 HGQM ER LE M+ F H +VLVCT I+E+G+D P ANT+I+++A FGL QL+QLR Sbjct: 853 AHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQLYQLR 912 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGRS QAYA + P ++ A++R+ I ++ LGAGF +A DL IRGAG +LG Sbjct: 913 GRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVAMEDLRIRGAGNILG 972 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 E QSG M +G L++E+LE AV LK S +TE+ + +P+ +P+ +I D Sbjct: 973 EAQSGHMTRVGLELFLEMLEEAVTRLKGD-----PPRESVETELNIGIPAHIPEGYIEDA 1027 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 RL FYK ++SA ++I++E+ DR+G+ P T L + L++Q +++ +++ + Sbjct: 1028 RDRLRFYKALSSATDAAAQQDIEMEMRDRYGVFPPELETFLALLVLKRQLRRMQVQRADI 1087 Query: 1081 NEKGGVIEFAE-KNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKT-RIEWVRQF 1138 + + E + V+ LI + + RL P L++ D R++ +R Sbjct: 1088 YPDKVRLVWDERQTAVDIGRLIEWVGQHADRARLQPPATLEWRLDTGLAAGARLDAMRGE 1147 Query: 1139 MRELEENA 1146 + L ++ Sbjct: 1148 LFRLVPDS 1155 >UniRef50_C0BHL1 Transcription-repair coupling factor n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BHL1_9BACT Length = 1064 Score = 997 bits (2579), Expect = 0.0, Method: Composition-based stats. Identities = 356/1117 (31%), Positives = 569/1117 (50%), Gaps = 87/1117 (7%) Query: 44 LIAPDMQNALRLHDEISQFT-DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLP-TM 101 +I + + A +++ + V+ Y + + R L ++ + Sbjct: 1 MILDNAEQAAYYLNDLERLLKPSDVLYFPASYRQAYAQETTDNANVLLRSEVLKKISGSK 60 Query: 102 QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGE 161 + ++I + +++ + L + K LS + + L G++ VD V GE Sbjct: 61 KPRIIISYPQAVFEKIISQNTLKRITFKIIKDTILSLNFINESLFEMGFQRVDFVTSPGE 120 Query: 162 YATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDK 221 +A RG ++D+F + PYR++FFDD ++ L FDV +QR++ ++I LLP Sbjct: 121 FAVRGGIIDVFSFAYQHPYRIEFFDDTVERLCSFDVQTQRSITAFDSIELLP-------- 172 Query: 222 AAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL 281 DT F++ + +FPAN+ Sbjct: 173 -----------DTSNND--------------------------FTDKRKSILEFFPANSS 195 Query: 282 LVNT--GDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQL 339 + + E+ + ++ V PP++L++ DE + N L Sbjct: 196 FIFSNFDKTTARLEQLFEKATDAYNSKEVTTQY---PPETLFMNRDEWIKDSHNKSVFVL 252 Query: 340 KTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALG 399 E + + ++ P A Q + L + + +F +E + + Sbjct: 253 --ERTEDLPITSQIHVKQSPQPAFNKQFDILISHLNENNKRGYKNTLF-CSNEQQTKRFH 309 Query: 400 ELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQ 459 ++ ++ + + GF D A + + ER + + Sbjct: 310 DIFQELEKTVHYKTE------------VLSIYEGFEDLEAQWACFSDHQIF-ERYHKYQL 356 Query: 460 DSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKL 519 S ++ L ++ +G V H++HG+G + G+ +E G E + L Y L Sbjct: 357 KSDAARKQALNLKELTQMEVGDYVTHIDHGIGTFGGLQRIEVEGKWQEAIKLIYGERDIL 416 Query: 520 YVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 Y+ + SLH IS+Y G ++KLG W +QK K++++A L+++YA+R K Sbjct: 417 YLSIHSLHKISKYNGKDGAVPKIYKLGSKTWKALKQKTKAKIKEIAFNLIELYAKRRQKI 476 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 GFAF D SF +E TPDQ + A+ +DM MDRLVCGDVGFGKTEVA+ Sbjct: 477 GFAFDPDSYLQWELEASFMYEDTPDQEKTTQAIKADMESQQPMDRLVCGDVGFGKTEVAI 536 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 RAAF A DN KQV VLVPTT+LA QH+ F R PVR++ ++RFRS K++ QIL ++ Sbjct: 537 RAAFKAADNSKQVVVLVPTTILAFQHFKTFSARLKELPVRVDYLNRFRSTKDKNQILQDL 596 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 +EGKIDILIGTH+L+ +V FKDLGLLIVDEE +FGV KE+I++++ N+D+LTLTATPI Sbjct: 597 SEGKIDILIGTHQLVNKNVVFKDLGLLIVDEEQKFGVAVKEKIRSLKENIDVLTLTATPI 656 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTL ++ RDLS+IATPP R +++ V + ++R+ I+ E+ RGGQV++++N V Sbjct: 657 PRTLQFSLMAARDLSVIATPPPNRFPIESDVVRFSETLIRDGIMYELQRGGQVFFIHNRV 716 Query: 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 ENI + + + LVP+ARIAIGHGQM +LE+ + F F++L+ TTIIE G+D+P Sbjct: 717 ENIAEISGLVQRLVPDARIAIGHGQMEGTKLEKTLLSFMQGDFDILIATTIIENGLDVPN 776 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 ANTI I A++FGL+ LHQ+RGRVGRS+ +A+ + +TP AM++DAQKR++ I + Sbjct: 777 ANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPHSAMSSDAQKRIKTIEQFSAI 836 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 G+G +A DLEIRGAG+LLG EQSG + +GF Y ++L+ A+D LK L + Sbjct: 837 GSGIQIAMKDLEIRGAGDLLGGEQSGFINEMGFETYQKILQEAIDELKENEFKELYQQEA 896 Query: 1000 --------QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFG 1051 ++ +++ + +PDD++ V RLS Y+ ++ KT EL + + ++ DRFG Sbjct: 897 NDTLKSYVKEVQIDTDLELFIPDDYVNIVKERLSLYQELSQVKTSIELVDFENKMKDRFG 956 Query: 1052 LLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVN------PAWLIGLLQ 1105 LP+ A LL+ +L+ A +LGI +L + F + +L+ +Q Sbjct: 957 PLPEAALDLLESMKLKWVATQLGIERLIIKRGSCICYFISDQQSDFFQTVAFTFLLTQIQ 1016 Query: 1106 KQPQHYRLDGPT-----RLKFIQDLSERKTRIEWVRQ 1137 K P +L +L + + Sbjct: 1017 KAPDRIKLKEKNTSNGLKLLLAIQSINDIQTLTVLLN 1053 >UniRef50_Q6MB04 Probable transcription-repair coupling factor mfd n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MB04_PARUW Length = 1101 Score = 995 bits (2573), Expect = 0.0, Method: Composition-based stats. Identities = 364/1116 (32%), Positives = 589/1116 (52%), Gaps = 57/1116 (5%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLA 71 + L+ EL A A + A + V+++ Q RL ++S FT+ ++ Sbjct: 23 HTKDILLIEELWNAPKALIAALAQQVTGKHVLILTGSSQEEARLFHDLSFFTNCPTVDFP 82 Query: 72 DWETLPYDSFSPHQDIISSRLSTLYQL-PTMQRGVLIVPVNTLMQRVCPHSFLHGHALVM 130 WETLP ++ P DI+ R L ++ + + +++ + +Q++ S L + Sbjct: 83 SWETLPSENVPPSPDIVGERYQLLKKINSSSEPHIILTSLQACLQKLIAPSAFQKLYLTL 142 Query: 131 KKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEID 190 K + D L +L+ GY+ + GE+A RG ++D+FP+ S PYRL+F+ D+++ Sbjct: 143 KANESFFFDDLIQKLNLMGYQRKFIASDKGEFAVRGGIIDVFPVSSPDPYRLEFWGDDLE 202 Query: 191 SLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSK 250 S+R++D Q ++ VE I++ P E + E + + I+ + Sbjct: 203 SIRIYDPIGQISVRAVEQIDIAPGLELELLNQSNEQASFLDY----LGPETLIIFDDL-- 256 Query: 251 GTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDP 310 L + L S N + + +Q ++ + Sbjct: 257 ------------LALEDRYASLISLGANNKFFSSIEEFLHLLTPYQKMFWSQKPIEELSE 304 Query: 311 MRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAP 370 ++ L QS + +F +LK + + F + + + +++ Sbjct: 305 VKHLDSKQSGYYSQTTIFHKLK------FQMFNRDWTVKRWRHPFNTITNYFISQEEQGD 358 Query: 371 LDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAP----QRIMRLDEASDRGRYLM 426 +++ + S +LL ++ Q+++ + + Sbjct: 359 F---------NGDEILYRLPSLSHETFRLDLLCASELEENNLRQKLLSNNIHLPKQTTYQ 409 Query: 427 IGAAEHGFVDTVRNLALICESDLLGE-RVARRRQDSRRTINPDTLIRNLAELHIGQPVVH 485 IG G V ++ ++L ++ R++ S +P +L G+ +VH Sbjct: 410 IGYLSSGLVIQDEEWMILPLTELTHRYKIRRQKLRSTYHTSPAETY----DLTPGEVIVH 465 Query: 486 LEHGVGRYAGMTTL-EAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHK 544 L +G+GRY G+ GI E+ + YA+ AKLYVP + HLI++Y G E LH Sbjct: 466 LNNGIGRYLGIEKRANHLGILSEFFTIEYADQAKLYVPFNQAHLITKYLGSNEVIPKLHT 525 Query: 545 LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPD 604 +G W + ++ + A++LL YA+R KEGFA+ D Q F FPF T D Sbjct: 526 IGSSKWKKTKEHTERAILGYASDLLKSYAEREIKEGFAYPIDSADLQSFEGEFPFSETED 585 Query: 605 QAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-KQVAVLVPTTLLAQ 663 Q AI+++ DM AMDRL+CGDVG+GKTEVAMRAAF AV + KQVAVLVPTT+LA Sbjct: 586 QLAAISSIKQDMMSKKAMDRLICGDVGYGKTEVAMRAAFKAVTDGAKQVAVLVPTTVLAM 645 Query: 664 QHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 723 QH+DNF DR AN+P+ I ++SRFR+ K+ + L +A G IDI+IGTH+++ DVKFKDL Sbjct: 646 QHFDNFLDRMANFPINIGILSRFRTQKQIQETLEGIANGFIDIVIGTHRIIGEDVKFKDL 705 Query: 724 GLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 783 GL+I+DEE RFGV+ KE +K ++ VD LTL+ATPIPRTL M++ G RD+S+I TPP R Sbjct: 706 GLVIIDEEQRFGVKAKEHLKKIKIGVDCLTLSATPIPRTLYMSLIGARDMSVINTPPQDR 765 Query: 784 LAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHG 843 L KT + E +++ A+LRE+ R GQ + ++N VE+I + R+ L+P+AR+ + HG Sbjct: 766 LPTKTIITEPSDQIIQNALLRELSRDGQAFVIHNRVESIYSVSNRIKSLLPQARVLVAHG 825 Query: 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903 QM E++ + F + ++LV TTI+E G+DIP ANTI+I+RADHFGLA L+QLRGRV Sbjct: 826 QMHADEIDATFHAFKSGQADILVATTIVENGVDIPNANTILIDRADHFGLAALYQLRGRV 885 Query: 904 GRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQ 963 GR + +AYA+ L P+ + M +KRL+A++ G+G +A DLEIRGAG++LG EQ Sbjct: 886 GRWNRRAYAYFLVPNLRVMPELTRKRLQALSEASGYGSGMKVAMRDLEIRGAGDILGLEQ 945 Query: 964 SGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTR 1023 SG + +IGF LY ++L+ + L+ +T++EL + + LP+D++ +V+ R Sbjct: 946 SGHVSSIGFHLYCKMLKRTIQTLQGKL-----PSIVTETKIELAIDARLPEDYVNEVSLR 1000 Query: 1024 LSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 + Y+R+ A + E++ I E+ DRFG P+PA+ L + R+R A + G ++ + Sbjct: 1001 MEVYQRLGEAFSLEEVDSIWSEIRDRFGPPPEPAQWLYHLTRIRVHASRFGFTLIKQEKL 1060 Query: 1084 GGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRL 1119 +E +K L+ ++ + P L Sbjct: 1061 SLTMEKGKKGK-------DLIIRKILMPKFKSPQEL 1089 >UniRef50_D1PXI7 Transcription-repair coupling factor n=7 Tax=Bacteroidetes RepID=D1PXI7_9BACT Length = 1210 Score = 993 bits (2568), Expect = 0.0, Method: Composition-based stats. Identities = 349/1207 (28%), Positives = 573/1207 (47%), Gaps = 115/1207 (9%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEIS------QFTDQ 65 K+ + L L ++ + A+R P V I D A +++++ T + Sbjct: 26 KSVKNVFLQGLVASSAPLFFSSAAKRLNHPFVFILQDADEAGYFYNDLNLSSRTPSLTGK 85 Query: 66 M----------VMNLAD--WETLPYDSFSPHQDIISSRLSTLYQLPT------------- 100 V ++ Y +I+ R L +L + Sbjct: 86 GDDRLRETHSSVYYFPSSYRRSVKYGQRDAANEIL--RTEVLSKLSSLGTNNSLTDHHTS 143 Query: 101 ----------MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGY 150 + ++ + + V + L + +K Q + L +L G+ Sbjct: 144 SAPPAEGERINEPLFIVTYPEAIAELVVSQTHLDERRISLKTAQSIDITDLVHRLRELGF 203 Query: 151 RHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAIN 210 D V E G++A RG+++D++ SELP+R+DFF DEID++R F V+ Q + + ++ Sbjct: 204 EEKDYVYEPGQFAVRGSIIDVYSFSSELPFRIDFFGDEIDTIRTFTVEDQLSKDRKSGVD 263 Query: 211 LLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLP 270 ++P A I + DT V +D E++ + + G Sbjct: 264 IVPELATLVS-AKIPFLQFLPDDTVLVAKDMEYVSGMI-ERIYNEG-------------- 307 Query: 271 PLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLP----------PQSL 320 + L E + P Q + Sbjct: 308 ------------FSAQALAERLEGATEMEQEQTRREMTKESMLCPPTRFAADAGKFKQVI 355 Query: 321 WLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLET 380 +++ ++ R + A++ F P +L +++ Sbjct: 356 MGDPSKIYGRSESRGRDTASPSPMGEGWGGASISFHISPQPLFHKNFTLLRQSLGDYIQQ 415 Query: 381 FDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRN 440 V +S+ + + L ++L + +R + S + GF D Sbjct: 416 -GYRVYILADSKKQHQRLRDILDEMGADQERSGANAQRSKIDFTPIDRTIHEGFADNDLK 474 Query: 441 LALICESDLLGE-RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTL 499 + + + D R ++ L E+ G +VH++ G+G++ G+ + Sbjct: 475 ACFFTDHQIFDRFHKYNLKSDGARAGKMALTMKELQEMEPGDFIVHVDFGIGKFGGLVRV 534 Query: 500 EA------------GGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA-EENAPLHKLG 546 E + + Y N+ K+ V + SL+ IS+Y E L LG Sbjct: 535 PIPTQGNTRQDATDDSQYQEVIRIIYQNNDKVDVSIHSLYKISKYRSSDAGEAPRLSTLG 594 Query: 547 GDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQA 606 AW R ++KA ++++D+A +L+ +YA+R ++G+AF D Q SF +E TPDQ Sbjct: 595 TGAWDRMKEKAKKRIKDIARDLIRLYAKRRKEKGYAFSPDSFMQQELEASFLYEDTPDQL 654 Query: 607 QAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHY 666 +A V +DM + MDRLVCGDVGFGKTEVA+RAAF A + KQVAVLVPTT+LA QH+ Sbjct: 655 KATQDVKADMERARPMDRLVCGDVGFGKTEVAVRAAFKAACDSKQVAVLVPTTVLAFQHF 714 Query: 667 DNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 FRDR ++PVR++ +SR RSA + Q+L ++ GKIDI+IGTHKLL +VK+ DLGLL Sbjct: 715 QTFRDRLRDFPVRVDYLSRARSAGQTRQVLEDLESGKIDIIIGTHKLLGKNVKWHDLGLL 774 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 I+DEEH+FGV KE+++ ++ NVD +T++ATPIPRTL ++ G RD+SI+ TPP R + Sbjct: 775 IIDEEHKFGVSTKEKLRKLKTNVDTITMSATPIPRTLQFSLMGARDMSIMRTPPPNRYPI 834 Query: 787 KTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMR 846 T + + V+ +AI E+ R GQV+++ N + N+ + A + + +P+ R+AIGHG+M Sbjct: 835 HTELSTFGHEVITDAINFEMSRNGQVFFVNNRISNLPEIANLIQKHIPDCRVAIGHGKMS 894 Query: 847 ERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 906 ELE+V+ F + ++VL+ TTI+E GIDIP ANTIII A FGL+ LHQ+RGRVGRS Sbjct: 895 PEELEKVVMGFINYDYDVLLSTTIVENGIDIPNANTIIINGAHRFGLSDLHQMRGRVGRS 954 Query: 907 HHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGS 966 + +A+ +LL P +T +A++RLEA+ + +LG+GF LA DL+IRGAG LLG EQSG Sbjct: 955 NRKAFCYLLAPPKSVLTPEARRRLEALEAFSELGSGFNLAMQDLDIRGAGNLLGAEQSGF 1014 Query: 967 METIGFSLYMELLENAVDALKAGREPSLED------------LTSQQTEVELRMPSLLPD 1014 ME +G+ Y ++L AV L+ L + VE + PD Sbjct: 1015 MEDLGYETYQKILTQAVTELRNDEFSDLYADAIEEGKEISGSDFVEDCAVESDLEMYFPD 1074 Query: 1015 DFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 F+P + R+ Y+ + + + +++L + L+DRFG +P L+ + LR+ ++LG Sbjct: 1075 TFVPGSSERMLLYRELDNIEDDDDLSAYRQRLVDRFGKVPREGEELMQVVALRRVGKRLG 1134 Query: 1075 IRKLEGNEKGGVIEFAEKNHVN------PAWLIGLLQKQPQHYRLDGPTRLKFIQDLSER 1128 K+ + ++F +I + P+ +R + +S+ Sbjct: 1135 CEKVTLRQGMMTLQFVSNQDSPFYQSPVFGRIIKYVMANPRRCNFK-DSRGHRLIHISDV 1193 Query: 1129 KTRIEWV 1135 + E V Sbjct: 1194 PSITEAV 1200 >UniRef50_C0GM56 Transcription-repair coupling factor n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GM56_9DELT Length = 1144 Score = 993 bits (2568), Expect = 0.0, Method: Composition-based stats. Identities = 362/1138 (31%), Positives = 603/1138 (52%), Gaps = 39/1138 (3%) Query: 24 GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSP 83 G A +AE R VL+ P + + F+ + WE+ + SP Sbjct: 27 GPATQIYLAEYLRRQGHDAVLVLPPNSDVKQYMQLAEIFSRTSMEKDKFWESSWFFLPSP 86 Query: 84 --HQDIISSRLST-LYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDA 140 R+ ++ L + ++ ++++ + P + L++ G+ + Sbjct: 87 GHSSRPAWGRIWASMFGLMQQKGKAAVLTADSMLNYLPPPDVVRDVFLLLMTGEETNPGD 146 Query: 141 LRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ 200 + +L GY V V GE + RG +LD++ G P RL+FF + ++S+R F+ SQ Sbjct: 147 ILDKLVEWGYVRVFMVTSPGEVSQRGDILDIYAPGYPHPLRLEFFGNHLESIRTFEPVSQ 206 Query: 201 RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYW 260 R++ ++E +LP P + ++ R + D + + +Q + L ++ Sbjct: 207 RSIRQLEECLILPVSPSPMEDHLVKQARDKA-DYLKSTGEISRELRQRLEFKLEEKDPFY 265 Query: 261 QPLFFSEPLPPLFSYFPANT--LLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQ 318 F + + P + LV+T L TS E + E G P+ Sbjct: 266 PAGLFYSSPGEISEFLPEDAHFFLVDTARLRTSLEEEEWKLKQWAEAEGW--------PE 317 Query: 319 SLWLRVD-ELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAV--------QAQQKA 369 L+ + + + N +V + + K+ +LG +++ + + A Sbjct: 318 KLFFQPEVRARTMWHNRRQVVFERLVMGQKSRGVDLGEKEINSFSDIFWKPQDNRRPWPA 377 Query: 370 PLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGA 429 L AL+++ T + V+ + + R+ +++ + I + + RG Y ++ Sbjct: 378 FLQALKEWKRTANQ-VILNFNTAKSRDKFLDVIQKEDI---ELKTSFDPEVRGLYAVVAG 433 Query: 430 AEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHG 489 G + ++ ++ E L R R I + ++ G +VH ++G Sbjct: 434 TGTGMHMSWNHIYILGEDVLQPGTRQRTGPTGRFK-----GIARVEDIEPGDMLVHRDYG 488 Query: 490 VGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDA 549 +GR+ G+ + +YL+L YAND KLYVPV L+ +Y G + L KLGG Sbjct: 489 LGRFGGLERISTDTQASDYLVLYYANDDKLYVPVDRFSLVQKYKGPDGADPALDKLGGAN 548 Query: 550 WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAI 609 WS+ + + + ++ +A +L+D+YAQR +G+++ E YQ F ++F F+ TPDQ QAI Sbjct: 549 WSKTKNRVRKAIQKIAKDLVDMYAQRKVVKGYSYSPPEELYQEFANTFGFQETPDQEQAI 608 Query: 610 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 669 V+ DM MDRLVCGDVGFGKTEVAMRAAF AV + KQVA+L PTT+LA+QHY NF Sbjct: 609 REVMQDMESDEPMDRLVCGDVGFGKTEVAMRAAFRAVQDGKQVALLCPTTVLAEQHYQNF 668 Query: 670 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 729 R ++ + + M+SRF Q IL +G++DILIGTH++L DV L L+I+D Sbjct: 669 VQRMQDFAINVRMLSRFVPRNRQKIILEGARKGEVDILIGTHRILSQDVILPRLSLMILD 728 Query: 730 EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF 789 EE RFGVRHKE++K R N+D+LTLTATPIPRTL +++SG+R LS+I TPP R V++ Sbjct: 729 EEQRFGVRHKEKLKQYRQNIDVLTLTATPIPRTLQLSVSGIRTLSVIETPPLDRKPVESS 788 Query: 790 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERE 849 + E D +R A+ RE+ R GQV+++YN V+ ++ E + +L+PEAR+ + HGQM ER Sbjct: 789 IIERDRDFLRHALQRELDRQGQVFWVYNRVQGLESVMEYVQDLMPEARVDMAHGQMPERI 848 Query: 850 LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQ 909 LE M+ F H ++LVCT IIE+G+D P ANT+I+++A FGL QL+QLRGRVGRS Q Sbjct: 849 LEENMHRFWHHEIDILVCTAIIESGLDFPRANTLIVDQAHMFGLGQLYQLRGRVGRSQEQ 908 Query: 910 AYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMET 969 AYA+ + P + + ++KR++ I ++ LGAGF +A DL +RGAG +LGE QSG + Sbjct: 909 AYAYFIVPSVRELGEKSRKRMQIILDMDYLGAGFQVAMEDLRLRGAGNILGEVQSGQIGK 968 Query: 970 IGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKR 1029 +G L++E+++ V LK DL E+ + + +P+D+IPD RL +Y+ Sbjct: 969 VGLDLFLEMMQEEVGKLKGDTSYGSRDL-----EINIGFSAYIPEDYIPDAAERLKYYRM 1023 Query: 1030 IASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEF 1089 ++ + + +++ EL D FG LP+ +++ +++ + LG +K + E IE+ Sbjct: 1024 LSGGAQQQDFDQLSQELQDLFGKLPEELHNFINVLKIKHALKALGPQKADFMENRLSIEW 1083 Query: 1090 AEKN-HVNPAWLIGLLQKQPQHYRLDGPTRLKFIQD-LSERKTRIEWVRQFMRELEEN 1145 + + +NP L+ ++K RL P++L+ + S + ++ +++L ++ Sbjct: 1084 SAETGELNPEKLVQWIEKNSSIARLVPPSKLEIRLNRDSNVLNFLYELQDIVQDLTDH 1141 >UniRef50_C5VMF4 Transcription-repair coupling factor n=2 Tax=Prevotella RepID=C5VMF4_9BACT Length = 1178 Score = 992 bits (2566), Expect = 0.0, Method: Composition-based stats. Identities = 363/1183 (30%), Positives = 583/1183 (49%), Gaps = 85/1183 (7%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT----DQ-- 65 K+ L L +A A IAER V + D A ++++ + Sbjct: 26 KSIRTVFLQGLVASAAPMFFASIAERWKTTTVFVLNDNDEAGYFYNDLKTIAMPADGEGK 85 Query: 66 --MVMNLAD--WETLPYDSFSPHQDIISSRLSTLYQLP-------TMQRGVLIVPVNTLM 114 V+ + Y +I+ R L +L ++ + L Sbjct: 86 VAEVLFFPSSYRRAVKYGQRDAGNEIL--RTEVLTRLSALASDADNALPLYIVTEPSALS 143 Query: 115 QRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPM 174 + V L L + Q + + L S G+ D V E G++A RG+++D++ Sbjct: 144 ELVVSKKQLDERRLTLTVDQHIDIVEVEKTLRSFGFTETDYVYEPGQFAVRGSIIDVYSF 203 Query: 175 GSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDT 234 +ELP+R+DFF D+I+++R F+V++Q + E++ + ++P + + + D Sbjct: 204 SNELPFRIDFFGDDIETIRNFEVETQLSTEKLTRVEIVP-ELTTMSEEKVPFLQFLPEDA 262 Query: 235 FEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAER 294 +D ++ + +Q F ++ L + +T E+ Sbjct: 263 VLAFKDFLYVRDAIDN--------IYQEGFTNQALT-------------EKLEGKTELEQ 301 Query: 295 FQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLG 354 + + R E L P S W+ F ++ + A + Sbjct: 302 RELEVAFRKE--------GQLVPASRWMNDALDFRRIEFGINYSSSDLAKKKDGSRATIN 353 Query: 355 FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMR 414 F P LR +L + +SE + L ++ + Sbjct: 354 FSTSPQPLFHKNFDLLSKTLRDYLIK-GYKLYIFADSEKQTVRLRDIFDSLSDTNVSPDS 412 Query: 415 LD----EASDRGRYLMIG---------AAEHGFVDTVRNLALICESDLLGE-RVARRRQD 460 + E S G+ +G GFVD+ + + + + D Sbjct: 413 ENLSVAELSGEGQDATVGALPFTPVNRTLHEGFVDSTLKVCFFTDHQIFDRFHKYNLKSD 472 Query: 461 SRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLY 520 R ++ L E+ G +VH++ G+G++AG+ + AG E + L Y ++ + Sbjct: 473 KARQGKMALTMKELQEMEPGDFLVHVDFGIGKFAGLVRVPAGDSYQEMIRLVYQHNDIVD 532 Query: 521 VPVSSLHLISRY-AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 V + SL+ IS+Y G + E L LG AW R ++KA ++++D+A +L+ +YA+R ++ Sbjct: 533 VSIHSLYKISKYRRGDSGEPPRLSVLGSGAWDRLKEKAKKRIKDIARDLIKLYAKRRREK 592 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 GFAF D SF +E TPDQ +A + DM MDRLVCGDVGFGKTEVA+ Sbjct: 593 GFAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKTEVAI 652 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 RAAF A ++KQVAVLVPTT+LA QHY F+ R + PVR++ +SR RSAK+ Q+L ++ Sbjct: 653 RAAFKAAVDNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDYLSRARSAKQTKQVLEDL 712 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 AEGKIDIL+GTHKL+ VK+ DLGLLI+DEE +FGV KE+++ ++ NVD LT++ATPI Sbjct: 713 AEGKIDILVGTHKLIGKSVKWHDLGLLIIDEEQKFGVSTKEKLRQLKTNVDTLTMSATPI 772 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTL ++ G RD+SI+ TPP R ++T + + V+ +AI E+ R GQVY++ + + Sbjct: 773 PRTLQFSLMGARDMSIMRTPPPNRYPIQTEIASFSHEVIADAINFEMSRNGQVYFVNDRI 832 Query: 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 N+ + A + + VP RIAIGHGQM+ ELE ++ F + ++VL+ TTI+E GIDI Sbjct: 833 SNLPEIANLIKKYVPNCRIAIGHGQMKPEELEEIVMGFMNYDYDVLLSTTIVENGIDISN 892 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 ANTIII A FGL+ LHQ+RGRVGRS+ +A+ +LL P A+ +A++RLEA+ + DL Sbjct: 893 ANTIIINDAHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNPEARRRLEALETFSDL 952 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 G+GF LA DL+IRGAG LLG EQSG ME +G+ Y ++L AV LK L + Sbjct: 953 GSGFNLAMQDLDIRGAGNLLGSEQSGFMEDLGYETYQKILNQAVMELKNDEFQDLYEEEM 1012 Query: 1000 ------------QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELI 1047 VE + PD+++P + R+ Y+ + + + + +L+ + L Sbjct: 1013 DEGKQITGDDFIDDCAVESDLEMYFPDNYVPGSSERMLLYRELDNIEKDEDLDAYRKRLQ 1072 Query: 1048 DRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH------VNPAWLI 1101 DRFG +P L+ + LR+ ++LG K+ + ++F + ++ Sbjct: 1073 DRFGPVPRQGEELMQVVALRRVGKRLGCEKIILKQGRMQMQFVSNPNSVYYQSAAFDKVL 1132 Query: 1102 GLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 + P+ L K +S+ KT E V + +R +E+ Sbjct: 1133 NYIGYHPRRCNLK-ERNGKRSMVVSDVKTVGEGV-KVLRAIEQ 1173 >UniRef50_D2MMW5 Transcription-repair coupling factor n=2 Tax=Erysipelotrichaceae RepID=D2MMW5_9FIRM Length = 1142 Score = 991 bits (2562), Expect = 0.0, Method: Composition-based stats. Identities = 347/1102 (31%), Positives = 582/1102 (52%), Gaps = 34/1102 (3%) Query: 26 ACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVM-NLADWETLPYDSFSPH 84 A L+A ++ P++++ ++ A + ++ ++ F + E+L ++ + Sbjct: 35 QEALLMALSYQQKPRPMIVLKSNLYLAQQFYERLTSFLSEKECSLFGTDESLRVEAIASS 94 Query: 85 QDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQ 144 ++ + ++ TL+ L +++ + ++ + S ++ +K + S L+ + Sbjct: 95 PELSAQQVDTLFSLQKHPNQIVVTCPSAYLRFLPLPSQFKEASIHLKINEEWSIKVLKEK 154 Query: 145 LDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLE 204 L ++GY V + +A RG ++D++ + + P RL+FFD +I+S+R FD + QRT+ Sbjct: 155 LLASGYHQQAHVDQPLSFAIRGGIVDVYSINYDHPIRLEFFDTQIESIRFFDENIQRTIG 214 Query: 205 EVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDP---EHIYQQVSKGTLPAGIEYWQ 261 +E + ++PA I R + E + + + + + Sbjct: 215 TIEEVEIVPASIVFFSFNQIGDIRKGIQQDLERNPNVFLQDELMTTIQAMEAHLFDKSMY 274 Query: 262 PLF-FSEPLPPLFSYFPANTLLVNTGDLET-SAERFQADTLARFENRGVDPMRPLLPPQS 319 P + F + L+ Y L ++ L + +R + DT++ + + LLP Sbjct: 275 PYYAFVPNMAGLWDYMEDAELFISDEILVNDAIKRLKEDTISYIQEMAQENK--LLPRFD 332 Query: 320 LWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLE 379 LW ++ + + G ++ + P + L K ++ Sbjct: 333 LWHDLERSMPASRCY------------------YGDSYGDPVSHIEEVYLPNELLEKRIQ 374 Query: 380 -TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTV 438 V V ++ + + E+L KI + + +E YL GF Sbjct: 375 IAQKQRVTVFVLNKKEIQRIREILDHEKIEYRFLKEKEEIEKEALYLYEADWSQGFFLAD 434 Query: 439 RNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTT 498 + +A+ +L V R+ +I EL VVH +GVG+Y G+ T Sbjct: 435 QEVAVYTARELFE--VHHRKGRYENKFRNAEIIHAYQELEPKDYVVHANYGVGQYMGIET 492 Query: 499 LEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAA 558 E I ++L + Y +++L VP+ L+ ++ L+KLG W + + K Sbjct: 493 KEINHIKRDFLRIIYKANSELLVPLEQFRLVRKFVSREGIVPKLNKLGSGDWEKTKTKLQ 552 Query: 559 EKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQ 618 + V +VA LL++Y+ R G+AF D E+ + F D+FP++ T DQ +A+ + DM Sbjct: 553 KNVEEVATRLLNLYSSREQHIGYAFSKDTEETKKFEDAFPYDLTEDQKKAMVEIKKDMES 612 Query: 619 PLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPV 678 MDRL+CGDVGFGKTEV++RA+F AV +HKQV VL PTT+LA+QH+ F++R+ ++ V Sbjct: 613 SKPMDRLLCGDVGFGKTEVSIRASFKAVIDHKQVVVLCPTTILAEQHFSTFKNRYKDFAV 672 Query: 679 RIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRH 738 RIE++ RF +Q +IL ++ +G +DILIGTH++L DV FKDLGLL++DEEHRFGV H Sbjct: 673 RIEVLDRFVQKDKQQEILEDLEKGNVDILIGTHRVLSKDVHFKDLGLLVIDEEHRFGVEH 732 Query: 739 KERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVV 798 KE+IK +R VD+L L+ATPIPRTL M++ G+R LS + TPP R +V+T+V E + ++ Sbjct: 733 KEKIKELRNGVDVLALSATPIPRTLQMSLIGVRSLSQLETPPLNRYSVQTYVVEKNQALI 792 Query: 799 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFH 858 +AI +E+ R GQV+YLYN++E I A L + +P+ARI + HG++ E+E +M F+ Sbjct: 793 VDAIQKELSRKGQVFYLYNNIEFIYNRARTLQKELPDARIGVVHGKLGRDEIEDIMWRFN 852 Query: 859 HQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPH 918 HQ ++LV TTIIE GIDIP NTI+IE A +FGL+Q++Q++GRVGRS+ AYA+LL P+ Sbjct: 853 HQEIDILVTTTIIENGIDIPNVNTILIEDAQNFGLSQIYQMKGRVGRSNRLAYAYLLIPN 912 Query: 919 PKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMEL 978 K ++ AQKRL+A+ LG+G+ +A DL IRGAG+LLG QSG ++T+G Y+E+ Sbjct: 913 RKQLSEVAQKRLQAVKEFAKLGSGYKVAMRDLTIRGAGDLLGSSQSGFIDTVGIDFYIEM 972 Query: 979 LENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENE 1038 LE A++A R + + +++ S +P F D +L Y+RI + + E Sbjct: 973 LEAAIEA---KRNHQPIQKKEPKVKNNIQVSSYIPTGFAADDFDKLDLYQRIDALCHQQE 1029 Query: 1039 LEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAE--KNHVN 1096 LE+ K+E+ D++G LP + D L + ++ +K I F+ V+ Sbjct: 1030 LEDYKLEIKDQYGRLPKEVEMIFDKKALDIALSENHVQHYLQTDKATEITFSPLFSQSVD 1089 Query: 1097 PAWLIGLLQKQPQHYRLDGPTR 1118 L L + +L R Sbjct: 1090 GIRLFSLYSDLSKDIQLKYLNR 1111 >UniRef50_A2BWG1 Transcriptional-repair coupling factor n=11 Tax=Prochlorococcus marinus RepID=A2BWG1_PROM5 Length = 1175 Score = 990 bits (2561), Expect = 0.0, Method: Composition-based stats. Identities = 329/1155 (28%), Positives = 594/1155 (51%), Gaps = 44/1155 (3%) Query: 6 RYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ 65 ++ ++ + + A + ++ +A++ ++L++P+ + A + + + ++ Sbjct: 18 ELVKRIEKNKELNIIGSSRYAKSIIINSLAKKENKNIILVSPNEEIAYKWYGYFNSIGNR 77 Query: 66 MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM---QRGVLIVPVNTLMQRVCPHSF 122 ++ + LPY S + ++ S+LS + +L ++ ++I +L + + Sbjct: 78 NILYYPPSKNLPYGSINKSKETEYSQLSVISKLINNDKEEKNIIITTERSLQPHLIKKNI 137 Query: 123 LHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRL 182 + + KG + L +QL S GY + + G ++ RG ++D++P+ +ELP R+ Sbjct: 138 FKQKIITLNKGLAIEIKELTSQLVSLGYNKENLTSQEGSWSRRGEIIDIYPVNNELPIRI 197 Query: 183 DFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPE 242 +FFD+ ID +R +D +QRTL+ + + ++ + +EL E + E Sbjct: 198 EFFDNIIDKIREYDPVTQRTLDSINKVEIVQVGYNSLIREKLELLSD------EGVFNSE 251 Query: 243 HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLV--NTGDLETSAERFQADTL 300 I T ++ + + E L +Y ++++V D A + +++ Sbjct: 252 EI-------TTKNNLDRYLGII-EEYPSNLINYINEDSIIVIDEIDDCTKFANNWYIESV 303 Query: 301 ARFENRGVDPMRPLLPPQ-------SLWLRVDELFSELKNWPRVQLKTEHLPTKAANANL 353 F++ + + L +L + + + ++ + L N L Sbjct: 304 NNFDHFKDEITQNLRSNNINIKVKPNLHEKFEYILKTFSDFIVINLYEFESKRNLDNRFL 363 Query: 354 GFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGEL--LARIKIAPQR 411 + + KF+ D + S + R L E P Sbjct: 364 -LSDKRINSSSKNIGKLSKEINKFILNKDKVWILSAQPLRTRSLLFEHDCNTNYLEKPND 422 Query: 412 IMRLDEASDRGRYLMIGAAE----HGFVDTVRNLALICESDLLGERVARRRQDSRRTINP 467 + + D ++I GF + + LI + +L ++ RR Sbjct: 423 LDNAYKLIDIPTPVIIKNKNNYEIEGFYLPIWKIILITDKELFSQQALFNNVFIRRRKRS 482 Query: 468 DTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLH 527 N+ +++ G +VH HG+G++ + + G + +YL++ Y + K+ V L Sbjct: 483 VNSNINVNKINPGDYIVHKNHGIGQFLKLEKINITGESRDYLVIKYLDG-KISVAADQLG 541 Query: 528 LISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 587 I+RY + ++KLGG W + + K + ++ VA ++L +YA+R +G + D Sbjct: 542 SINRYRSTGKIMPKINKLGGAEWLKIKDKNRKIIKKVAYDILKLYAKREKLKGHIYPEDG 601 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD 647 + +SFP++ TPDQ A+ + DM MDRLVCGDVGFGKTEVA+RA F A+ Sbjct: 602 PWQKELEESFPYQPTPDQLTAVKEIKIDMESDKPMDRLVCGDVGFGKTEVAVRAIFKAIT 661 Query: 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 + KQV +L PTT+LAQQH+ F +RF+ +P+++ +++RF+++ E+ I A + KID++ Sbjct: 662 SGKQVILLAPTTILAQQHWRTFNNRFSPYPIKVSLLNRFKTSSEKKDIYAGLKNNKIDLV 721 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 + TH++L +++ K+LGLL++DEE RFGVR KE+IK ++ N+D+LTL+ATPIPRTL M++ Sbjct: 722 VATHQILGKEIEIKNLGLLVIDEEQRFGVRQKEKIKNIKTNIDVLTLSATPIPRTLYMSL 781 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 SG+R +S++ TPP R ++KT++ E D V+R AI +E+ RGGQ++Y+ + +I +A Sbjct: 782 SGLRQMSLLNTPPPSRRSIKTYLSEIDMDVIRTAISQELDRGGQIFYVLPRISDIDQAVN 841 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 +L + + + + HGQM E +LE M F++ ++++CTTIIE+G+DIP NTIIIE Sbjct: 842 KLTNMFNDLKFIVAHGQMNEIDLENAMIAFNNGEVDLMICTTIIESGLDIPKVNTIIIED 901 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 + FGL+QL+QLRGRVGRS QA+AWL P+ + +++RL+AI +LG+G+ LA Sbjct: 902 SHKFGLSQLYQLRGRVGRSGIQAHAWLFYPNLNNINEASKQRLKAIKDFSELGSGYQLAM 961 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR 1007 D+EIRG G LLGEEQSG + IG+ LY+E+L A+ + E + T+V+L Sbjct: 962 KDMEIRGVGSLLGEEQSGKVNAIGYDLYIEMLHEAISEING-----QEIPEVKDTQVDLP 1016 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLR 1067 + + +P +I + +L YK T EL E+ + +R+G+LP P +L+ + +L+ Sbjct: 1017 INAFIPATWILNREEKLDAYKEATECNTHKELTELATDWSNRYGVLPKPVESLILLMKLK 1076 Query: 1068 QQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIG--LLQKQPQHYRLDGPTRL-KFIQD 1124 A+K G K++ + +IE + ++ LI L + + + K Sbjct: 1077 LLAKKCGFNKIKLKKPNIIIE--TRLKISTFKLIKKALPTNIQNKFSFEEDDQFSKITIR 1134 Query: 1125 LSERKTRIEWVRQFM 1139 + Q + Sbjct: 1135 GIGITDIQNQIDQLI 1149 >UniRef50_UPI0001C317DD transcription-repair coupling factor n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C317DD Length = 1112 Score = 989 bits (2558), Expect = 0.0, Method: Composition-based stats. Identities = 385/1116 (34%), Positives = 586/1116 (52%), Gaps = 56/1116 (5%) Query: 22 LTGAACATLVAEIAERHA-GPVVLIAPDMQNALRLHDEISQFT-DQMVMNLADWETLPYD 79 ++ + +VA +A++ P++++A D + A L ++ + + V Sbjct: 27 VSQSLRPFVVAALAQQDPARPLLVVAGDDRQARDLAADMRTWLQPRPVRFYPSRGVAYES 86 Query: 80 SFSPHQDIISSRLSTLYQLPTMQ---RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRL 136 +P ++ R++ L L + V++V L ++V L H ++ G+ + Sbjct: 87 HLAPPAHLVGLRVAALDALIGERGAAAPVVVVSAVALSEKVPNP-ALRPHGFTLRVGELM 145 Query: 137 SRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFD 196 D L +AGY VDQV + G++A RG LLDL+P + R+D F DEI+SLR F Sbjct: 146 DLDESAEDLVAAGYERVDQVEDRGQFAIRGGLLDLYPATEDRAVRVDLFGDEIESLRWFS 205 Query: 197 VDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAG 256 +QR+L + E + + PA E + + E + I + + G A Sbjct: 206 TFTQRSLGDAEEVEVSPAAELAPEHRELAEI-----AALEDADNRPDIAELLPVGDFHA- 259 Query: 257 IEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSA--ERFQADTLARFENRGVDPMRPL 314 + P +++ + A + +Q A + D Sbjct: 260 ---------------MLDLVPDAAVMIAAEEEIAPALRDHWQDVCTAFHDTDAHD----- 299 Query: 315 LPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDAL 374 L++ + + + L R+ L + L F+ K L Sbjct: 300 -----LYVAPEAVQAALGERARIHLSS-----IDGGQPLAFRGQAADVAARGVKEAEPEL 349 Query: 375 RKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGF 434 K + + V + G + L R+K+ R + D + GF Sbjct: 350 EKLVRS-GYRTVVAFGRRGEGDRAAYNLGRMKV---RWVDGDAPRGADLAFVEARLRDGF 405 Query: 435 VDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYA 494 + LA+I E L R A R T +R+ +L G VVH +HG+ R+A Sbjct: 406 IAPGFRLAVIPEHRLFHRRPA--RTAGTGTGRRRGALRSFTDLRTGDIVVHEDHGLARFA 463 Query: 495 GMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRAR 554 G T G+T +YL L YA K+++PV ISRY G ++ PL KLGG W + Sbjct: 464 GFDTKTVAGVTRDYLNLEYAGSDKVFMPVDQFAKISRYVGAGGDHPPLSKLGGRRWDTLK 523 Query: 555 QKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLS 614 +A +++A ELL++YA+R + G AF D + + F D++P+ TPDQ +AI V + Sbjct: 524 ARARRAAQEMAGELLNLYAERKRRAGHAFPPDSDWMREFEDAWPYRETPDQREAIEQVKT 583 Query: 615 DMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA 674 DM MDRL+CGDVG+GKTEVA+RAAF A ++ +QV VLVPTT+LAQQHY F +R Sbjct: 584 DMETARPMDRLICGDVGYGKTEVALRAAFKAANDGRQVMVLVPTTILAQQHYGTFAERLK 643 Query: 675 NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRF 734 ++P IE +SRFR A EQ + EG +DILIGTH+LL DV+ +DLGLLIVDEE RF Sbjct: 644 DYPFTIEHVSRFRPAAEQRAAIRAFTEGSVDILIGTHRLLSRDVRPRDLGLLIVDEEQRF 703 Query: 735 GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYD 794 GV+ KE ++ ++ VD++ ++ATPIPRTL M+++G+RD+S+I TPP R VKT+V EYD Sbjct: 704 GVKQKELLRQLKLKVDVIAMSATPIPRTLQMSIAGIRDISVIETPPEGRRPVKTYVGEYD 763 Query: 795 SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 854 +V+ AI RE RGGQ ++L+N VE I + AERL L PEAR + HGQ+ E+ LE M Sbjct: 764 EQLVKSAIERERSRGGQAFFLHNRVETIDETAERLRALCPEARFEVAHGQLDEKTLEERM 823 Query: 855 NDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL 914 F +VLV T+IIE+GIDIP ANT+++ERAD FGL+QL+Q+RGRVGRS +AYA+L Sbjct: 824 LRFLRGEADVLVATSIIESGIDIPQANTLMVERADLFGLSQLYQIRGRVGRSRERAYAYL 883 Query: 915 LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSL 974 L P A+T DA +RL A++ +LGAGF +A DLEIRGAG LLG+EQSG + +GF L Sbjct: 884 LYPSASALTADAAQRLSALSDYTELGAGFKVAMRDLEIRGAGNLLGDEQSGHVAALGFEL 943 Query: 975 YMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK 1034 YM++L+ AV + + ++ +++ + + +P D+IP ++ ++RIA A+ Sbjct: 944 YMQMLDEAVQEMGGE---DGTEELAEPVRLDVNVDAYVPVDYIPYEQAKIDVHRRIAGAR 1000 Query: 1035 TENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH 1094 +EL E++ EL DRFG P+P R LL + + R + + G R + + E Sbjct: 1001 EVSELHELRSELADRFGEPPEPLRNLLLLQQARIKLGEAGARAVSFRGGRLAVTPIE--- 1057 Query: 1095 VNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKT 1130 ++ + ++ P+ G ++L Sbjct: 1058 LDSRRAKRMREEIPEALYESGKSQLSVRVPDDPAAR 1093 >UniRef50_C9LF18 Transcription-repair coupling factor n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LF18_9BACT Length = 1143 Score = 988 bits (2554), Expect = 0.0, Method: Composition-based stats. Identities = 348/1134 (30%), Positives = 561/1134 (49%), Gaps = 71/1134 (6%) Query: 31 VAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLAD--WETLPYDSFSPHQDI 87 + + + ++ +A D + A + ++ Q + V + Y DI Sbjct: 52 LRANLKNNCPTLLFVADDEETAGYFYHDLIQLLGEADVFFYPSMFKRAVKYGQRDAANDI 111 Query: 88 ISSRLSTLYQLPTMQRG--VLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQL 145 + R L +L + ++ L RV + + +V+++ AL +L Sbjct: 112 L--RTEVLDRLASQNPAGTCIVTFPAALATRVAAKADMAAKTIVIEEEGHYDLTALEERL 169 Query: 146 DSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEE 205 G++ D V E G++A RG++LD++ SE P+R+DFF D++DS+R F+V +Q + E Sbjct: 170 LEFGFKRKDYVYEPGDFAVRGSILDVYSFASEFPFRIDFFGDDVDSIRSFEVQTQLSKER 229 Query: 206 VEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFF 265 ++A+ ++P + T + + + R+PE+I ++ + Sbjct: 230 LQAVTIVPDVD-ATGGDNVAFTDYLPESSLVITREPEYIRDVINN-------------IY 275 Query: 266 SEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVD 325 E + ++ + + + L ++ D Sbjct: 276 DEG-------------FTREAAMSGEWAAYEGERDTDLPQADLPTPQAEPDKAKLLVKGD 322 Query: 326 ELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPV 385 E++ L+ +P L P A A + F P A +L+ + + Sbjct: 323 EIYDRLRAFPNFLLAQGTTP---AAAKIQFHTTPQPIFHKNFDLVQRAFSDYLDQ-NYTI 378 Query: 386 VFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALIC 445 + +S +++ L ++LA GF D + Sbjct: 379 YITADSRKQQQRLADILAEKGGNSTFTPVDQT------------LHAGFSDENLRICCFT 426 Query: 446 ESDLLGE-RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTL-EAGG 503 + + R D R + L + H G +VHL+HGVGR+AG+ + A G Sbjct: 427 DHQIFDRYHKYSLRSDHARDAKMALTLNELLQFHPGDYIVHLDHGVGRFAGLVRVPAADG 486 Query: 504 ITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRD 563 E + LTY +D + V + +LH +S+Y G L +LG AW + + + +K++D Sbjct: 487 SQQEMIKLTYQHDDIVLVSIHALHKLSKYKGREGTPPHLSRLGTGAWEKMKDRTKKKIKD 546 Query: 564 VAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMD 623 +A L+ +Y+QR ++G+AF D Q SF +E TPDQ + V +DM MD Sbjct: 547 IARNLIKLYSQRKEEKGYAFSADSFLQQELEASFTYEDTPDQLKVTQEVKADMESLRPMD 606 Query: 624 RLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMI 683 RLVCGDVGFGKTE+A+RAA A ++KQVAVLVPTT+LA QHY F +R +PVR+ + Sbjct: 607 RLVCGDVGFGKTEIAVRAALKAAVDNKQVAVLVPTTVLALQHYRTFAERLKGFPVRVAYL 666 Query: 684 SRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIK 743 SR +SAKE IL ++AEG I+I++GTHKL+ V+F+DLGLLI+DEE +FGV KER++ Sbjct: 667 SRAKSAKETKSILHDLAEGHINIIVGTHKLIGKTVRFQDLGLLIIDEEQKFGVAVKERLR 726 Query: 744 AMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAIL 803 ++ NVD LT++ATPIPRTL ++ G RDLS+I TPP R ++T + ++ ++ EA+ Sbjct: 727 ELKVNVDTLTMSATPIPRTLQFSLMGARDLSVIQTPPPNRRPIQTEIHTFNHEIIAEAVN 786 Query: 804 REILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN 863 E+ R GQV+ + N V ++ + + VP+AR+ +GHGQM ELE+++ DF + ++ Sbjct: 787 FEMSRNGQVFIVTNRVASLGSLKALVEKYVPDARVVVGHGQMAPAELEKIILDFVNYDYD 846 Query: 864 VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMT 923 VL+ TTI+E GIDIP ANTI+I+ A FGL+ LHQ+RGRVGRS +A+ +LL P + Sbjct: 847 VLISTTIVENGIDIPNANTILIDAAHTFGLSDLHQMRGRVGRSSQKAFCYLLAPPLSILK 906 Query: 924 TDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAV 983 DA++RL+AI DLG+G +A DL+IRGAG LLG EQSG + +G+ Y ++L AV Sbjct: 907 DDARRRLQAIEEFSDLGSGIHIAMQDLDIRGAGNLLGAEQSGFIADLGYETYQKILAEAV 966 Query: 984 DALKAGREPSLE-----------DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIAS 1032 LK+ L D + VE + + P+ ++P R+ Y+ + Sbjct: 967 SELKSEEFADLYADSLKKTNLTGDFFVDECNVECDLHAFFPETYVPGATERMMLYRELDG 1026 Query: 1033 AKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEK 1092 +++L + + DRFG LP LL I LR+ +KLG K+ ++ + F K Sbjct: 1027 LTADDQLAAFRKRMEDRFGKLPPEGDELLAIVPLRRSGRKLGAEKITLKQRRMTLYFISK 1086 Query: 1093 NHVN------PAWLIGLLQKQPQHYRLD--GPTRLKFIQDLSERKTRIEWVRQF 1138 LI + L G R I+D+ + ++ Sbjct: 1087 TDSPFYKSATFDRLIAFATTNFRRCELKESGGKRRMIIKDIGSVGQALNLLQSL 1140 >UniRef50_C9MMN8 Transcription-repair coupling factor n=1 Tax=Prevotella veroralis F0319 RepID=C9MMN8_9BACT Length = 1187 Score = 987 bits (2553), Expect = 0.0, Method: Composition-based stats. Identities = 351/1182 (29%), Positives = 568/1182 (48%), Gaps = 88/1182 (7%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-DQ-------M 66 L L +A A IAER +V + D + A ++++ T + Sbjct: 29 RSIFLQGLVASAAPMFFAAIAERWKKTIVFVLSDNEEAGYFYNDLKTITMPEDGTSNTAE 88 Query: 67 VMNLAD--WETLPYDSFSPHQDIISSRLSTLYQL---------PTMQRGVLIVPVNTLMQ 115 V+ + Y +I+ R L +L ++ + L + Sbjct: 89 VLFFPSSYRRAVKYGQRDAGNEIL--RTEVLTRLSALATEKGTTNRLPLYIVTDPSALSE 146 Query: 116 RVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMG 175 +V L L + Q + + L S G+ D V E G++A RG++LD++ Sbjct: 147 QVVSKRQLDERRLSLSVNQHIDIVEVEKTLRSFGFTETDYVYEPGQFAVRGSILDVYSYS 206 Query: 176 SELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF 235 ELPYR+DFF D+I+++R F+V+SQ + +++E I ++P + + D+F Sbjct: 207 GELPYRIDFFGDDIETIRTFEVESQLSSKKLEHIEVVPELATLL-EEKVPFLHFLPSDSF 265 Query: 236 EVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERF 295 +D ++ + G L E Sbjct: 266 LAFKDFLYVRDAIEN-IYKEG--------------------------FTAQALTVQREGK 298 Query: 296 QADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGF 355 E + + S ++ + ++ + + + F Sbjct: 299 TEVEQHELEQAFRKEGQLIT--ASHFMNEALNYRRIEFGVTHSISDTAKKADGQHVTIQF 356 Query: 356 QKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRL 415 LR +L + +SE + L ++ + Sbjct: 357 NTTAQPLFHKNFDLLSKTLRDYLLQ-GYKLYIFADSEKQTIRLKDIFESLSNPDMVPDSE 415 Query: 416 DEASDRGRYLMIGA--------------AEHGFVDTVRNLALICESDLLGE-RVARRRQD 460 + + G GFVD + + + + D Sbjct: 416 NLSVVEATTNSQGETKVRALPFTPVNRTIHEGFVDNTLKVCFFTDHQIFDRFHKYNLKSD 475 Query: 461 SRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLY 520 R ++ L E+ G +VH++ G+G++AG+ + G E + L Y ++ + Sbjct: 476 KARQGKMALTMKELQEMEPGDFLVHVDFGIGKFAGLVRVPTGDSYQEVIRLVYQHNDIVD 535 Query: 521 VPVSSLHLISRYA-GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKE 579 V + SL+ IS+Y G + E L LG AW R +++A ++++D+A +L+ +YA+R ++ Sbjct: 536 VSIHSLYKISKYRRGNSGEPPLLSVLGSGAWDRLKERAKKRIKDLARDLIKLYAKRRREK 595 Query: 580 GFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAM 639 GFAF D SF +E TPDQ +A + DM MDRLVCGDVGFGKTEVA+ Sbjct: 596 GFAFSPDSFMQHELEASFLYEDTPDQLKATQELKQDMESARPMDRLVCGDVGFGKTEVAI 655 Query: 640 RAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEV 699 RAAF A ++KQVAVLVPTT+LA QHY F+ R + PVR++ +SR RSAK+ Q++ ++ Sbjct: 656 RAAFKAAVDNKQVAVLVPTTVLAFQHYQTFKKRLKDMPVRVDYLSRARSAKQTKQVIEDL 715 Query: 700 AEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPI 759 AEGKI+IL+GTHKL+ VK+ DLGLLI+DEE +FGV KE+++ ++ NVD LT++ATPI Sbjct: 716 AEGKINILVGTHKLIGKTVKWHDLGLLIIDEEQKFGVTTKEKLRQLKTNVDTLTMSATPI 775 Query: 760 PRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDV 819 PRTL ++ G RD+SI+ TPP R ++T + + V+ +AI E+ R GQVY++ N V Sbjct: 776 PRTLQFSLMGARDMSIMRTPPPNRYPIQTQIASFSHEVIADAINFEMSRNGQVYFVNNRV 835 Query: 820 ENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 N+ + A + + VP+ R+AIGHGQM+ ELE+++ F + ++VL+ TTI+E GIDI Sbjct: 836 GNLPEIANLIKKYVPDCRVAIGHGQMKPEELEKIIMGFMNYDYDVLLSTTIVENGIDISN 895 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 ANTIII A FGL+ LHQ+RGRVGRS+ +A+ +LL P A+ +DA+ RL A+ + DL Sbjct: 896 ANTIIINEAHRFGLSDLHQMRGRVGRSNKKAFCYLLAPPLAALNSDARHRLLALETFSDL 955 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 G+GF LA DL+IRGAG LLG EQSG ME +G+ Y ++L AV LK L Sbjct: 956 GSGFNLAMQDLDIRGAGNLLGSEQSGFMEDLGYETYQKILSQAVTELKNDEFQDLYAEEM 1015 Query: 1000 ------------QQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELI 1047 VE + PD+++P + R+ Y+ + + + + +LE + LI Sbjct: 1016 NEGKQITGDDFIDDCAVESDLEMYFPDNYVPGSSERMLLYRELDNIEKDEDLEAYRQRLI 1075 Query: 1048 DRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH------VNPAWLI 1101 DRFG +P L+ + LR+ ++LG K+ ++ ++F + ++ Sbjct: 1076 DRFGPVPRQGEELMQVVALRRIGKRLGCEKIILKQERMQMQFVSNPNSMYYQSAAFGKVL 1135 Query: 1102 GLLQKQPQHYRL--DGPTRLKFIQDLSERKTRIEWVRQFMRE 1141 + P+ L R + D+ + ++ +R+ +E Sbjct: 1136 NYIGYHPRQCNLKEKNGKRSMVVSDVKSVEQAVKVLREIDKE 1177 >UniRef50_B8DPF5 Transcription-repair coupling factor n=6 Tax=Desulfovibrionales RepID=B8DPF5_DESVM Length = 1197 Score = 986 bits (2550), Expect = 0.0, Method: Composition-based stats. Identities = 385/1130 (34%), Positives = 598/1130 (52%), Gaps = 45/1130 (3%) Query: 23 TGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLAD---------W 73 +G A +A R VV++ D + F+ ++ W Sbjct: 47 SGMGGAARLALALMRAGRDVVMVVRDAAELAEARALTTLFSPELSGTDPAVTQARWDAQW 106 Query: 74 ETLP-YDSFSPHQDIISSRLSTLYQLPTMQ-RGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 P + + + + ++R+++LY L + +I+ V+ L+ ++ P H L + Sbjct: 107 IVFPQHPAGTRGRGAWAARMASLYALSRREHPRGIIISVDNLLPKLPPVDIFEHHELRLA 166 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 +G+ +S + + Q G+ V GE A RG +LD+FP G E P RL+FF D ++ Sbjct: 167 RGEDMSPELVLDQAIDWGFERAQMVSRPGEAARRGDILDIFPPGYEKPLRLEFFGDTLED 226 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFE---VKRDPEHIYQQV 248 +R+FD SQR+L +E LLP + E +W+ + + + ++ Sbjct: 227 IRLFDATSQRSLASLEEFRLLPVAPVVGCREYREAAARRWKQLRKDGVIDGEQAAALARM 286 Query: 249 SKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG--DLETSAERFQADTLARFENR 306 ++G + P + E + + P + + + DL T+ E + + A + R Sbjct: 287 AEGEVTG----LLPGAWYENATWMEDWLPRDAVWLLPDRADLSTALEAARTNWEALLD-R 341 Query: 307 GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDL----- 361 D R P + DE + + + + + +L ++L Sbjct: 342 QYDEHRLRQPRPLVLRDADEAQAAWRGRSVAHFERLVMGVERTGVDLPERRLHAFRDLFA 401 Query: 362 ---AVQAQQKAPLDALRKFLETF---DGPVVFSVESEGRREALGELLARIKIAPQRIMRL 415 +V + P L L + VV S S+ R +L + + P Sbjct: 402 ATPSVPVDEDRPWQRLVTALRQWTSERRQVVLSFASDRSRRKFLKLAEQDGVRPNLRYS- 460 Query: 416 DEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLA 475 +DRG Y ++ G N+ +I E D+L + R+ + + Sbjct: 461 --PADRGLYALVAPFRAGIDLAWDNVLVIGE-DVLQPKADRQPRVPTGAF---LGLDKYD 514 Query: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGG 535 +L G +VH ++GVGR+ G+ ++ GG+ ++L+L YA + +LY+PV L LI R+ GG Sbjct: 515 DLSPGDLLVHRDYGVGRFGGLHRMDLGGVANDFLLLEYAGEDRLYLPVDRLSLIQRFKGG 574 Query: 536 AEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCD 595 + L KLGG W + KA + + +AA+L+ +YA R +G+ + E Y+ F Sbjct: 575 DDSVPSLDKLGGSGWRACKDKARKAIEKIAADLVQMYAYRKVAKGYRYGPLGELYREFEA 634 Query: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655 SF FE TPDQA+AI VL DM +P MDRLVCGDVGFGKTEVA+RAAF A +QVA+L Sbjct: 635 SFGFEETPDQARAIQDVLDDMEKPEPMDRLVCGDVGFGKTEVALRAAFRAAAEGRQVALL 694 Query: 656 VPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ 715 PTT+LA+QHY FR R A +PV + M+SRF S ++Q ++L A G+IDILIGTH+LL Sbjct: 695 CPTTVLAEQHYQTFRSRLAGFPVNVGMLSRFVSRQKQKEVLQAAARGQIDILIGTHRLLS 754 Query: 716 SDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSI 775 DV+ +LGLL++DEE RFGVRHKE++K R NVD LTLTATPIPRTL ++MSG+R+LS+ Sbjct: 755 DDVQLPNLGLLVLDEEQRFGVRHKEKLKKFRKNVDALTLTATPIPRTLQLSMSGIRELSV 814 Query: 776 IATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE 835 I T P R V T + E D +R+ + REI R GQV++++N V+ +++ AE + LVP Sbjct: 815 IETAPPERKPVATALIERDQNALRQILEREIAREGQVFWVHNRVQGLERVAEFVRGLVPT 874 Query: 836 ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQ 895 AR+ + HGQM ERELE M+ F H +VLVCT I+E+G+D P ANT+I+++A FGL Q Sbjct: 875 ARVGMAHGQMGERELEDTMHKFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQ 934 Query: 896 LHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGA 955 L+QLRGRVGRS QAYA + + + A++R+ I L+ LGAGF +A DL +RGA Sbjct: 935 LYQLRGRVGRSDRQAYAVFVVSDAERLPEQARQRMRIILELDYLGAGFQVAMEDLRLRGA 994 Query: 956 GELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDD 1015 G +LGE QSG M +G LY+E+LE V LK S + E+ + + + +P+ Sbjct: 995 GNILGEVQSGHMTRLGLDLYLEMLEEEVARLKGA-----PPRESVEPELNIGLAAHIPET 1049 Query: 1016 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 +I D RL FYK ++SA L+++++EL DRFG P R L + L++ L + Sbjct: 1050 YIGDARERLKFYKALSSAPDAATLQDVEMELRDRFGPCPPELRNFLAVLVLKRFLATLQV 1109 Query: 1076 RKLEGNEKGGVIEFAEKNH-VNPAWLIGLLQKQPQHYRLDGPTRLKFIQD 1124 + + + + + + E+ + P L+ + + RL P+ L+ + Sbjct: 1110 VRADIHPERLRLVWDERQTVIAPERLVAWVAARQGKARLVPPSTLEVRME 1159 >UniRef50_C6HVP9 Transcription-repair coupling factor n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HVP9_9BACT Length = 1145 Score = 966 bits (2497), Expect = 0.0, Method: Composition-based stats. Identities = 382/1134 (33%), Positives = 593/1134 (52%), Gaps = 41/1134 (3%) Query: 6 RYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGP--VVLIAPDMQNALRLHDEISQFT 63 + T P K + + + + L + R P + ++ + ALRL +EI Sbjct: 16 KITPPEKRLISQTIPGIAREGFSLL-PGLLRRAGRPEILWVLTSTPEKALRLVEEIRSAP 74 Query: 64 -----DQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM-QRGVLIVPVNTLMQRV 117 + V+ + E LPY+ SP I + R+ L +L + V++ PV ++++ Sbjct: 75 LLLDMEPDVLLFPEEEVLPYERESPADFIRAERIHALDRLASDTPPDVVVSPVVAVLRKT 134 Query: 118 CPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE 177 L ++ G ++ L + GY V QV GE++ RGAL+DL+ Sbjct: 135 LSPPLLKSVRRTLRTGMEEDPQSVVETLLAQGYVRVPQVTAPGEFSVRGALVDLYSTDRR 194 Query: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT-DKAAIELFRSQWRDTFE 236 P RL++ D EI S+R FD ++QR++E V ++LLP+HE+ T ++++ W D Sbjct: 195 RPVRLEWDDLEIRSIRSFDPNTQRSVEAVGEVDLLPSHEWITPSPSSLDTPSRDWIDRHL 254 Query: 237 VKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQ 296 P GIE + P FFSE P+ +L+ D + +R Sbjct: 255 SLP-------------FPPGIERYLPSFFSETAAPV---LSRPDILILVDDWKAVLDRT- 297 Query: 297 ADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQ 356 + + +R + + L + +L + L + T + A G Sbjct: 298 ----SDWISRIEEGWKVLPAEERSFLPAPDAAFFLPKSRQEWESLLPCLTVSDEAPEGTP 353 Query: 357 KLPDLAVQAQQKAPLDALRKFLET-FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL 415 L A+ L + + + V + G+ +G++L ++ Sbjct: 354 SLLGSVPSARIDRNLSLISEIERQPREWRTVIFCRTRGQMSRIGDMLEAGELPYITSFDS 413 Query: 416 DEASDRG--RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRN 473 + L+ G E F + + ++ ++ L ++ R + + R+ Sbjct: 414 LASGAGRLPVTLLQGDVEEAFELPLDQILVLSDTWLF-KKPVSRPPFRSFSTSTQVYRRD 472 Query: 474 LAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYA 533 G VVHL G+GR+ G+ + G GE+ ++ Y + Y+ V + + Y Sbjct: 473 RPTFADGDYVVHLHQGIGRFRGLQEVSVGANRGEFAVIEYLGGDRFYLSVDQMDQLLPYQ 532 Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 G + +LGG +WS+ + + ++V ++A+L+ +YA+R A EGFAF + + F Sbjct: 533 GPEGSAPRIDRLGGKSWSQTKSRVRKQVEKISADLVMLYARRKAAEGFAFSPESILTREF 592 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 SFP++ T DQ +AI AVLSDM P MDRL+ GDVGFGKTEVAMRAA AV + KQVA Sbjct: 593 DQSFPYDLTTDQEEAIQAVLSDMESPTPMDRLILGDVGFGKTEVAMRAAIRAVADGKQVA 652 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 VLVPTTLLA QH++ F++RFA +PVRIE +SR S EQ + + G+ DI++GT L Sbjct: 653 VLVPTTLLALQHHETFKNRFAGFPVRIESLSRMVSPAEQKLVRERLRRGETDIVVGTTAL 712 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 L + V+F+DLGLLI+DEE RFGVR KE + + NVD LTL+ATPIPRTL MAMSG++ + Sbjct: 713 LANAVEFRDLGLLIIDEEQRFGVRQKENLASRFPNVDRLTLSATPIPRTLQMAMSGLKGI 772 Query: 774 SIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELV 833 S I TPP R A+KT + +D +RE I RE+ R GQV++++N V +I + A LA L Sbjct: 773 SFIMTPPQGRKAIKTAIMRFDRERIREVIDRELAREGQVFFIHNRVSSIARWARYLAALF 832 Query: 834 PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893 PEA +A HGQM E E+E VM F + +LV TTI+E+G+DIP ANTI+I RAD FG+ Sbjct: 833 PEAGVAYAHGQMGEEEIEAVMGKFLRRESRILVSTTIVESGLDIPYANTILINRADMFGI 892 Query: 894 AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953 A+L+QLRGRVGR QAYA+ +TP +A+ A+KRL + + LG+G+ +A DLEIR Sbjct: 893 AELYQLRGRVGRGGQQAYAYFITPSEEALGEVARKRLHTLTTHSGLGSGYQIAMRDLEIR 952 Query: 954 GAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLP 1013 GAG LLG +Q+G + +G LY+E++E AV AL + P + VE + + +P Sbjct: 953 GAGSLLGHQQTGQVAMVGLDLYLEMVEEAVAALSSETPPPPGEEP---ARVEWKTEARIP 1009 Query: 1014 DDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKL 1073 +D++ + R+ FY+R+A A T + + I+ EL DRFG LP R LL AR+R A + Sbjct: 1010 EDYLGHPSERIDFYRRLAHADTMDSVTRIEEELSDRFGPLPRETRNLLAGARIRILATQR 1069 Query: 1074 GIRKLEGNEKGGVIEFAEKNHVNPAWLIG-LLQKQPQHYRLDGPTRLKFIQDLS 1126 G ++ ++ ++ +++ P ++ L K ++ L Sbjct: 1070 GFSEVVVRDRDITLK--QRHGALPKEIVEPALDLFGDRLSFQADGSWKILRTLP 1121 >UniRef50_B5JG36 Transcription-repair coupling factor n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JG36_9BACT Length = 1144 Score = 962 bits (2486), Expect = 0.0, Method: Composition-based stats. Identities = 382/1171 (32%), Positives = 585/1171 (49%), Gaps = 105/1171 (8%) Query: 21 ELTGAACATLVAEIAERHAGPVV-LIAPDMQNALRLHDEISQF--------TDQMVMNLA 71 + A A ++ + V+ ++A + + A +L+ +++ F T + Sbjct: 25 GVGEEATAPILEDWIHSSKSRVLTIVAKNSRLAEQLNADLAYFHTQIRGDKTKTRFLYFP 84 Query: 72 DWETLPYDSFSP--HQDIISSRLSTLYQL-PTMQRGVLIVPVNTLMQRVCPHSFLHGHAL 128 + L D SP + S R++ L + + + VL+ L Q V L L Sbjct: 85 EETELSEDEDSPVDRFETGSDRIAALASIRQSNDQLVLVTTPRALAQAVPAVDALTASQL 144 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 V+K GQ + L +L S Y + G++A RG L+D++P+ ++ PYR+DFF DE Sbjct: 145 VLKAGQTHPFEKLVEKLKSLDYDNEGLCEAPGQFARRGGLIDVYPISADTPYRIDFFGDE 204 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQV 248 ID+++ D +QR+ E+I + A A + +P+ + + Sbjct: 205 IDAIKELDPVTQRSGAPTESIAIDAAPTLELKPAPNGYADHLPARSAWALLEPDQLMESF 264 Query: 249 SKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGV 308 + +E + L +++ + Sbjct: 265 D-----SALEQAHGHSIGKAWTRL--------------------RNTRSEQADLWATFSD 299 Query: 309 DPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQK 368 + P ++ + + +K A+ L ++ + Sbjct: 300 LDLDSQDDPAAITKTYEAE-------SLTYYRPLADSSKLADERLADEQSARIQF----- 347 Query: 369 APLDALRKFLETFDGPVVFSVESEGRREALGELLARI-KIAPQRIMRLDEASDRGRYLM- 426 L+ + K+ + ++ + + + + E++ ++ + ++G + Sbjct: 348 --LEQVLKWSKA-GEQIIVVLPNNSDKNRIQEIIESSTELKKIKFTFWKGDLNQGFRIHF 404 Query: 427 ---IGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIR---NLAELHIG 480 +G F+ + LI E++L G R R+ + + + + + AEL G Sbjct: 405 RPKLGKLSWPFLKKTKGCVLITETELFGRRRGRKPPSKSKALVSQSQVDQLLDFAELVDG 464 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 + VVHL HG+ Y G+T ++ G E L L + L+VP+ HLISRY G ++ Sbjct: 465 EFVVHLSHGIALYRGITKVDMQGQMREVLSLEFDEGVVLHVPLQESHLISRYVGISKTRP 524 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 L K+G + WS+ R+ A D+AA+LL++ A+R G AF D E F SFPF+ Sbjct: 525 KLGKIGSNRWSKTREAAERSTLDLAAKLLELQAKRDTGGGHAFALDTEWQTEFEGSFPFK 584 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 TPDQ +AI DM + + MDRL+CGDVGFGKTEVA+RAAF AV + KQVA+LVPTT+ Sbjct: 585 ETPDQLKAIKESKGDMEKEIPMDRLICGDVGFGKTEVAIRAAFKAVMDDKQVAILVPTTV 644 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LAQQH+ NFRDR A +P+ +E +SRFR E +IL A GK+DILIGTH++LQ DV F Sbjct: 645 LAQQHFLNFRDRMAGYPIVVETVSRFRKPAEVKKILQSTAAGKVDILIGTHRILQKDVSF 704 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 KDLGL+++DEE RFG++HKE K R+ VDILT++ATPIPRTL MA++G R+LS+I T P Sbjct: 705 KDLGLVVIDEEQRFGIKHKEVFKEWRSTVDILTMSATPIPRTLYMALTGARELSVIETAP 764 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 R ++T V+ YD +V E I REI RGGQV+YL+N V+ I A +L +++PE I + Sbjct: 765 VERKPIQTIVKSYDDALVSEVIRREIARGGQVFYLHNRVQTINTVAAKLEKMLPEVSIGV 824 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 GHGQM E++LE VM DF +Q++ VLVCTTIIE+G+DIP NTIIIE AD FGL+QL+QLR Sbjct: 825 GHGQMDEKKLENVMLDFVNQKYQVLVCTTIIESGLDIPNCNTIIIEGADRFGLSQLYQLR 884 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGR QAYA+LL K + A+KRL AI LGAGF LA DLE+RGAG LLG Sbjct: 885 GRVGRFKRQAYAYLLLHKHKRLMDVARKRLAAIRHHNQLGAGFRLAMRDLELRGAGNLLG 944 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAG-----------------------REPSLEDL 997 EQSG + +GF LY +LL+ +V LK ED Sbjct: 945 SEQSGHIVGVGFELYCQLLKQSVARLKGDATALQIRASVKLDFVYQGEGAMTAANRHEDG 1004 Query: 998 TSQQTEVEL------RMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFG 1051 + ++L + + +P FI + R+ Y+++A A + ++ E++ + DRFG Sbjct: 1005 FTVLNRLDLKEGACEPIQARIPATFIDETRLRIDLYRKMALASSVAQVRELREAITDRFG 1064 Query: 1052 LLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHY 1111 P LL + +R A++ IR +E + I L + P+ Sbjct: 1065 KFPAEVEALLRLTEVRCLAEQKHIRSVESQGNRLKCRIYRGRESDY---IKLGSRFPR-- 1119 Query: 1112 RLDGPTRLKFIQDLSERKTRIEWVRQFMREL 1142 + + R+ + F+ L Sbjct: 1120 -----------LNSTNPMKRLNEILVFLNNL 1139 >UniRef50_C1SMC7 Transcription-repair coupling factor Mfd n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMC7_9BACT Length = 1103 Score = 955 bits (2469), Expect = 0.0, Method: Composition-based stats. Identities = 372/1131 (32%), Positives = 584/1131 (51%), Gaps = 38/1131 (3%) Query: 18 LLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT-DQMVMNLADWETL 76 LL L G + +L+A + + + E F V+ ++ Sbjct: 3 LLSSLWGCSSIWHFYNN-RPKGRVSILVAGNKREYDLIMQEAEFFFSGVRVLGFPEYTQD 61 Query: 77 PYDSFSPHQDIISSRLSTLYQLPTMQ-RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 PY+ ++ + R STL L +L+ L++ + P +K G Sbjct: 62 PYEEARVLPEVFAKRASTLDFLLNADASCILVTTPYGLLKSLPPKDVFASATADIKVGGT 121 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 R+ L L +GY HV+ V GEYA RG L++FP SE P ++FFDDE + + Sbjct: 122 YEREELEYILAYSGYVHVEMVEGAGEYAFRGDTLEVFPADSETPCLIEFFDDEAERISYV 181 Query: 196 DVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPA 255 D+ ++RTL+ + + LLPA E D + + + I +V A Sbjct: 182 DIRTRRTLKIEKTVRLLPASEALFDVDDLRKYI-----------NDSDILDKVELYGKYA 230 Query: 256 GIEYWQPLFFSEPLPPLFSYFPAN-TLLVNTGDLETSAERFQADTLARF-ENRGVDPMRP 313 G + P + L Y + L T D + F+ + E Sbjct: 231 GCHWLTPAVH--NMENLMDYVSESYNFLFFTEDYRSIFTDFRVLIDDKMPEGENFWNNNF 288 Query: 314 LLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDA 373 + P + L+ ++ + + + + T ++ + A +D Sbjct: 289 IAPSRMLFYMTEDRVNVMAD-----ITTAESEGTRYKSSAMLFAGKKGNLYQSMSAAMDI 343 Query: 374 LRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHG 433 ++ + E V+ S+ES+ + E P ++ E G YL G Sbjct: 344 IKSYAEKS-FRVICSIESDRLAKLFSEFSKDYAFIPAKVENYKEVDKAGLYLHSEKFRGG 402 Query: 434 FVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRY 493 F+D LA+ + D+ G R ++ + + +++L G VVH+++G+G Y Sbjct: 403 FIDEKLMLAVFTDEDIFGTAKKRPKRGKKELYSTT-----ISDLEPGDHVVHVDYGIGIY 457 Query: 494 AGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRA 553 G+ GG+ G+++ L Y N LYVP+SS+ I +Y G + L W + Sbjct: 458 LGLVHQSIGGVEGDFIQLEYDNSEFLYVPLSSIGQIQKYIGSEGSRPRVSSLQTQQWKKV 517 Query: 554 RQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVL 613 + +A + + +A +LL +YAQR ++GF+F D F SF ++ T DQ AI+ V Sbjct: 518 KAQAKARAKKIAMDLLKLYAQRKVEKGFSFTDDGNMLDNFEQSFEYDETDDQLSAIHDVY 577 Query: 614 SDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRF 673 +DM + M+RLVCGDVGFGKTEVAMRAA AV KQVAVLVPTT+LA+QHY F +RF Sbjct: 578 NDMESAMPMERLVCGDVGFGKTEVAMRAACKAVAGGKQVAVLVPTTVLARQHYMTFFERF 637 Query: 674 ANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHR 733 + PV+++ +SRFR+A++ QIL ++++G +DILIGTHK+L +++F+DLGLLI+DEE R Sbjct: 638 KDLPVKVDYVSRFRTARDTRQILVDLSKGDLDILIGTHKMLSKEIEFQDLGLLIIDEEQR 697 Query: 734 FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREY 793 FGV HKE+IKAMR+NVD+L L+ATPIPRTL +++SG+RD+S I TPP RL V T V + Sbjct: 698 FGVAHKEKIKAMRSNVDVLYLSATPIPRTLQLSLSGIRDISTIDTPPVDRLPVITKVIKR 757 Query: 794 DSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERV 853 D V+ AI RE+ RGGQV++L+N VENIQ A + ++P A ++I HGQM ELE++ Sbjct: 758 DVE-VKNAIQRELERGGQVFFLHNRVENIQTVAAGVKNMLPGANVSIAHGQMTSSELEKI 816 Query: 854 MNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAW 913 + +F+ + +VLVCT IIE GIDI ANTI+I A H GLAQ++QL+GRVGRS + Y + Sbjct: 817 LMEFYSGKTDVLVCTAIIENGIDIANANTIVINDAAHLGLAQIYQLKGRVGRSGRRGYCY 876 Query: 914 LLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFS 973 L+ +++ AQKRL+ I L DLG+G +A +DL++RGAG+LLG +QSG M +G+ Sbjct: 877 LVVEQFSSLSDVAQKRLKIIQQLSDLGSGVKIAFYDLQLRGAGDLLGADQSGFMVKVGYE 936 Query: 974 LYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASA 1033 L++ +++ AV LK S TE+ +P +P D+I D RL +Y++ + Sbjct: 937 LFIAMIDEAVKDLKG------ITSISADTEIITAIPHFIPADYIEDTKIRLDYYRKFSGV 990 Query: 1034 KTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKN 1093 + + + E+ EL + +G L L I +++ A + K+ + F + Sbjct: 991 EDMDSVRELLYELSELYGELKPETENLGRIMLIKKLAGFANMEKVYLYSNKVKMVFTKGT 1050 Query: 1094 HVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 NP ++ + + D L + + ++ F+ EL + Sbjct: 1051 PSNPQRIMDAIANAGAGSKFDNEFTLSLF--FEKEQKVLDKTVSFINELIK 1099 >UniRef50_C1A9L3 Transcription-repair coupling factor n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9L3_GEMAT Length = 1104 Score = 951 bits (2459), Expect = 0.0, Method: Composition-based stats. Identities = 369/1156 (31%), Positives = 569/1156 (49%), Gaps = 81/1156 (7%) Query: 1 MPEQYRYTLPV-KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDM-QNALRLHDE 58 +P R + AG +G L G++ A LVA +A +V++ D +A R + Sbjct: 14 LPAFDRMLKALPGAGASLRVGGLAGSSDAVLVAGLARALPQRLVVVIADQLGDAERWLAD 73 Query: 59 ISQFTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRV 117 + D V E + PH ++ R+ TL +L +L+ +++R Sbjct: 74 LQALLDDVPVALYPPREG--FGEVEPHAEVAGERVETLEKLGRSAVRILLTTSRAVLERT 131 Query: 118 CPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSE 177 L G L ++KG + L T L+S G+ V V + +++ RG + D++ G Sbjct: 132 ALPRALSGARLELRKGDQRRLSDLVTHLESIGFERVPMVEDVAQFSVRGGIFDIYSFGMA 191 Query: 178 LPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEV 237 P RL+F+ D+I LR FD+++QR+ + E +LP Sbjct: 192 EPVRLEFWGDDIIELRHFDLNTQRSTRDAELALILPV----------------------- 228 Query: 238 KRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQA 297 + ++ + + P+++++V E + Sbjct: 229 -DGRVQMAEETDERVALPALW------------------PSDSIVVMPAGSSVLPELVRT 269 Query: 298 -DTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANL--G 354 D A + L++ E+ S L + V++ +AN+ Sbjct: 270 WDEAAHHIELALRRGEDYTHRDLLFVPPPEMASTLARFGTVRINPPPQKATSANSKDLQP 329 Query: 355 FQKLPDLAVQAQQKAPLDA---LRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQR 411 PD+ + + + + L+ V ++ G+ E L ELL Sbjct: 330 VGPEPDVMFPVRHPETISRDLRVLRRLQRDGLHTVILCDNAGQAERLDELLGEDG----- 384 Query: 412 IMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLI 471 L IG GFV + ++ + ++ RR R + + Sbjct: 385 --------PVAAALAIGVLGGGFVVPHV-VRVLTDHEIF---RRERRLRRTRRYSTGASL 432 Query: 472 RNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISR 531 L L G VVHLEHG+G Y G+ + T E ++ Y +L VP+ + I R Sbjct: 433 DTLGALKPGDYVVHLEHGIGIYRGIEKIFVRESTIESAVIEYEGGDRLNVPLYRIDQIER 492 Query: 532 YAGGAEEN-----APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 Y + + LHKLGG+ W R+K + ++ ELL++YA+R D Sbjct: 493 YRSAHDVSDDAPAPRLHKLGGNKWKAQREKTRMAILEMTQELLELYARRKVTTRPPHGAD 552 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 + SF FE TPDQ +A V D+ MDRL+ GDVG+GKTE+A+RAAF AV Sbjct: 553 GAWQRQLESSFLFEDTPDQRKATEDVKRDLEGERPMDRLLVGDVGYGKTEIAIRAAFKAV 612 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 +QVAVLVPTT+LA+QH +F DR A++PV +E++SRF++A +Q ++ ++ + ++DI Sbjct: 613 QGGRQVAVLVPTTILAEQHARSFGDRLADFPVTVEVMSRFQTASQQAVVVEKLKKKQVDI 672 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 +IGTH+LL DV F DLGL+IVDEEHRFGV+HKER+K ++ + D+LTLTATPIPRTL+ + Sbjct: 673 VIGTHRLLSPDVAFGDLGLIIVDEEHRFGVKHKERLKQLKLSTDVLTLTATPIPRTLHQS 732 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 ++G+RDL+++ T P R V TFV +D ++ EAI RE+ RGGQV++++N +E I+ A Sbjct: 733 LAGLRDLTLMQTAPRDRSPVLTFVEPFDDALIEEAISRELDRGGQVFFVHNRIETIEAIA 792 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 + L +VP AR+A+GHGQM+ERELE+VM F ++LV T I+E+G+D+P ANT+ + Sbjct: 793 DHLRRIVPRARVAVGHGQMKERELEKVMRQFVEGEVDILVSTLIVESGLDVPNANTMFVN 852 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 RADH GLAQL+QLRGRVGRSH +AY +LL P + DA++RL + +LGAG+ +A Sbjct: 853 RADHLGLAQLYQLRGRVGRSHRRAYCFLLVP--DRVDEDAERRLAVLEHHTELGAGYRVA 910 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVEL 1006 DLE+RGAG LLG EQSG + +GF LY+ LL+ V L G +V L Sbjct: 911 LKDLELRGAGNLLGPEQSGFVHAVGFDLYLRLLDETVRLLADGGG----QKPWIPADVNL 966 Query: 1007 RMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARL 1066 P+ LPD++I +L Y+R+ + + +E +K E+ DRFG LP A L A L Sbjct: 967 DFPAYLPDEYIISQEAKLDVYRRLTAMRDVAAIEALKREVRDRFGALPPAADALFGSAVL 1026 Query: 1067 RQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLS 1126 R L + + I F L + + L Sbjct: 1027 RVLGAMLSVDGVLVRASEARITFRADAVPRLKGLSAAFHEVQFQVDVRRTQPLALKLTRL 1086 Query: 1127 ERKTRIEWVRQFMREL 1142 +E + + +R L Sbjct: 1087 GGAEMLEGLNRALRAL 1102 >UniRef50_Q1AXK2 Transcription-repair coupling factor n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXK2_RUBXD Length = 1054 Score = 951 bits (2458), Expect = 0.0, Method: Composition-based stats. Identities = 394/1110 (35%), Positives = 580/1110 (52%), Gaps = 78/1110 (7%) Query: 30 LVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIIS 89 L A +A R+ PV+L++ ++A R + + FTD+ V++L D F P + Sbjct: 17 LRAYLAARNERPVLLLSSTEEDAARYARDAACFTDEPVVHLPSRGVPYGDVFDPEVWRVG 76 Query: 90 SRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAG 149 +R L+ L + + V+ LM+R H L + G L D + +L + G Sbjct: 77 ARQRALHALDSAR--VVAAGPLALMERTPLHE-----PLRLAGGVELDMDEVLLRLAALG 129 Query: 150 YRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAI 209 Y V++V GE+A RG +LDLFP P R++++ DE++S+R + ++R ++E+ A+ Sbjct: 130 YERVERVFRPGEFAVRGGILDLFPSTRRSPVRVEWWGDEVESVRAVSLATRRAVKELAAV 189 Query: 210 NLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPL 269 + A E D + E + ++ +G G++ Sbjct: 190 TVYAARE---------------GDLAGLAAGEEGLPEEARRGVRVPGLDRLLLALGPVEP 234 Query: 270 PPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFS 329 L +E AE + E + PL + E + Sbjct: 235 AGLL-----------PDGMEVWAEEPREGVAGGLEGLVEELYAPLPAADLRFSSGGEGEA 283 Query: 330 ELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSV 389 P LA A+ L V + Sbjct: 284 L--------------------------SAPPLAPFAETPREAARRLGGLVEDGMAVFIAC 317 Query: 390 ESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDL 449 S + L +I D + G Y + G E GF +A++ Sbjct: 318 GSGSQVRRTVYALGQIGREVVAAEHADPSLPPGLYAVPGEVEEGFSYPEGGIAVV----- 372 Query: 450 LGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYL 509 + A + R + + A+L G VVH G+GR+ G+ + E G+T +Y+ Sbjct: 373 --RQDAVLGRRRERRRRAGRALTSFADLKPGDLVVHAVQGIGRFEGLVSKEVLGVTRDYM 430 Query: 510 MLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELL 569 +TY L+VP + L+ +Y G A L +LGG++W+R ++ +VR +A ELL Sbjct: 431 QVTYRGGDTLFVPYEQMELLHKYVGDG---ARLDRLGGESWARVTERVRRRVRMLAGELL 487 Query: 570 DIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGD 629 ++A+RA EGFAF D E + +SFP++ TPDQA AI AV DM +P MDRLVCGD Sbjct: 488 RLHAERARAEGFAFPPDGEWERELEESFPYQETPDQAAAIAAVKEDMQRPRPMDRLVCGD 547 Query: 630 VGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSA 689 VGFGKTEVA+RAAF A KQ +L PTT+L QQHY FR+R + VR+E +SRF +A Sbjct: 548 VGFGKTEVAVRAAFKAALAGKQTLMLAPTTILVQQHYRTFRERLERFAVRVESLSRFTTA 607 Query: 690 KEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANV 749 E+ +IL ++A G++DILIGTH LL ++V+ KDLGLL+VDEE RFGVRHKERIK ++ +V Sbjct: 608 AERRRILRDLASGEVDILIGTHALLGAEVRPKDLGLLVVDEEQRFGVRHKERIKQLKTSV 667 Query: 750 DILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRG 809 D+LTLTATPIPRT+ M +SG+RD+S+I TPPA R +V T V YD +VR AI RE+ RG Sbjct: 668 DVLTLTATPIPRTMQMGLSGLRDISVIETPPAGRRSVLTHVGPYDEELVRRAIEREVARG 727 Query: 810 GQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 869 GQV++++N VE I++AA+RL ELVP R A+ HGQM ER LE VM F +VLV TT Sbjct: 728 GQVFFVHNRVETIEEAAQRLRELVPGVRFAVAHGQMPERALEEVMQRFLEGEADVLVTTT 787 Query: 870 IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKR 929 I+E+G+DI TANT+I+ERAD GLAQL+QLRGR+GRS QAYA+L P + +AQ+R Sbjct: 788 IVESGLDIATANTLIVERADAMGLAQLYQLRGRIGRSTEQAYAYLFAPLGATL--EAQRR 845 Query: 930 LEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAG 989 LEA+ +LG+GFA+A DLEIRGAG LLG EQSG + +GF +Y+ LLE AV Sbjct: 846 LEALLDFTELGSGFAVAMRDLEIRGAGNLLGAEQSGHIAAVGFEMYLRLLEEAVAL---E 902 Query: 990 REPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDR 1049 R E + VE+ + + LP +++ D R+ Y+R ++A + E++++ EL +R Sbjct: 903 RGEEPERREERPVIVEVLLDAYLPPEYVADEIERVDLYRRASAAGSLAEVDDLAEELEER 962 Query: 1050 FGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQ 1109 FG LP+PAR LL + RL+ ++ G + + + + + L++ Sbjct: 963 FGPLPEPARNLLGLTRLKILGRRAGASSVGYRSGALTVYGVSPSEAD----LAALRRATG 1018 Query: 1110 HYRLDGPTRLKFIQDLSERKTRIEWVRQFM 1139 R+ E + + Sbjct: 1019 GVVSGREGRVSVRGSGLGALELCERALRLL 1048 >UniRef50_Q5PBQ9 Transcription repair coupling factor n=7 Tax=Anaplasma RepID=Q5PBQ9_ANAMM Length = 1152 Score = 948 bits (2452), Expect = 0.0, Method: Composition-based stats. Identities = 343/1139 (30%), Positives = 578/1139 (50%), Gaps = 31/1139 (2%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGP-VVLIAPDMQNALRLHDEISQFTDQM-VM 68 V G ++ + L+A++ V + + + L + F + V Sbjct: 29 VHVGSLEVITGVAPEFGDMLMAQMCMEDRHTSFVFVVQEGTSLAHLAKTLKFFDRERDVF 88 Query: 69 NLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ-RGVLIVPVNTLMQRVCPHSFLHGHA 127 L W+++P+ SP ++++R+ L + + V++ + Q+V P + A Sbjct: 89 ILPKWDSIPHKGVSPSSLVMATRMKCLLDVSNAKAPYVMLTTSGAVAQKVLPAHSVASAA 148 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 + + G LS DAL L + GY V E G +A RG ++D+F P R+DF D Sbjct: 149 ITVAPGDGLSMDALVQHLVACGYTQSSAVREVGSFAVRGEIVDIFQPIDNKPTRIDFCYD 208 Query: 188 EIDSLRVFDVDSQRTLE-EVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQ 246 ++S+R FD+D+Q T + ++ + PA E + + F +++ + DP Sbjct: 209 AVESIRYFDLDTQITDGGALPSLVIYPASEVIKTEENLNRFYTRYMQQYP-NPDPAFAEA 267 Query: 247 QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENR 306 +S+ G E W PL ++ L +F Y P L++ E R + + + Sbjct: 268 MLSR-QKCMGEEQWLPLLQADELSTIFDYVPNAKLVLAEQASEEVLRRLEGAQEEDYTAQ 326 Query: 307 GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKA----ANANLGFQKLPDLA 362 L ++++ F + +L +++N+G L Sbjct: 327 SATGKSALFLDLQGYIQITRSFHKAIFCRFDATSENNLWEHQQVICSSSNIGAVPNFRLL 386 Query: 363 VQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRG 422 Q Q+ ++ + ++ + SEG + I I R+ E + Sbjct: 387 AQEQKADVFAVAADYINSAHKTLILACYSEGSLLYFIDKFKAHGIH---ISRVHEYAGPI 443 Query: 423 RYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQP 482 + +I E LL + A R + T++ L +G Sbjct: 444 GAFNAAVLPTSCDVVTHDFIVITEYSLLKRQCAAGR-------SSGTVVSEDTCLAVGDV 496 Query: 483 VVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPL 542 VVH ++GVG + + TL G +++ + Y N+ K +VPV + LI++Y G + L Sbjct: 497 VVHKDYGVGIFNALRTLSVCGHLHDFVEILYRNNDKFFVPVEDIDLITKY--GTNTDVVL 554 Query: 543 HKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETT 602 KLG +W K ++++D+A LL A R EG F ++ FC FP+ T Sbjct: 555 DKLGSTSWQERSAKLKKRIKDIAQTLLHSEAMRVLAEGNKFLANQRYLD-FCKEFPYVET 613 Query: 603 PDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH--KQVAVLVPTTL 660 DQ +AI+ V D+ MDRL+CGDVGFGKTEVA+RAAFL ++ KQVAV+VPTTL Sbjct: 614 EDQLKAISEVEEDLASGKVMDRLICGDVGFGKTEVALRAAFLVINEDPAKQVAVIVPTTL 673 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 L +QH FR+RF N+ + ++ ++R SA +++++ + G I+I+IGT LL D++F Sbjct: 674 LCRQHLAAFRERFQNYDINVQQLARS-SATQKSKVKKALENGDINIIIGTSALLAEDIRF 732 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 DL LLI+DEE FGV+ KE++K +R +V +L+L+ATPIPRTL+M++SG+++LS++ TPP Sbjct: 733 LDLSLLIIDEEQHFGVQQKEQLKKLRNDVHVLSLSATPIPRTLHMSLSGIKNLSVLRTPP 792 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 R+AV + +YD +++ AIL E+ RGG+V++ + +I L +LVP ++ + Sbjct: 793 MGRMAVDIAIIQYDGNIIKTAILDEVSRGGRVFFTCPFISDIDGVLADLQKLVPNVKVEV 852 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 HG+ R L+++MNDF +F+VL+ T+IIE+GIDIP ANTII+ AD FGLAQL+QL+ Sbjct: 853 AHGRTSTRALDKIMNDFFDGKFSVLLTTSIIESGIDIPFANTIIVHNADMFGLAQLYQLK 912 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGRS + YA+ + + KRLEA+ SL +G+GFALA D+++RG G L+G Sbjct: 913 GRVGRSTLKGYAYFIVSKKALPDSPGMKRLEAVRSLNSVGSGFALALQDMDMRGFGNLVG 972 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 EEQSG+++ +G LY ++LE A+ A + E +V + +P+ +I ++ Sbjct: 973 EEQSGNIKEVGIELYHKMLEEAIAACQ---EQPHIQAGCHSVKVGVDANVRIPESYIREL 1029 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 + R+ YK+I+S KT E + VEL++RFG P LL++ R++Q LGI+++ Sbjct: 1030 DLRIRVYKKISSLKTAEEADTCFVELVNRFGAPPPEVMNLLNVMRIKQLCSALGIQEVTQ 1089 Query: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFM 1139 ++ ++ L ++ ++ + + +E++ + Sbjct: 1090 AKRHVTFSLSQGTAAYSGMLKHIIDNHDLF--TICDHSIRMSVPKASQNQILEYILSHL 1146 >UniRef50_A6DFV9 Transcription-repair coupling factor, MFD (Superfamily II helicase ) n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DFV9_9BACT Length = 1062 Score = 948 bits (2451), Expect = 0.0, Method: Composition-based stats. Identities = 382/1078 (35%), Positives = 558/1078 (51%), Gaps = 94/1078 (8%) Query: 41 PVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQ---DIISSRLSTLYQ 97 ++ + A +E ++ Q L + + L Y F+ Q DI R TL Q Sbjct: 43 RLLCVFETSSKAESCFNEFKKY--QSASLLPNVDLLLYPEFNSDQVEYDIDLERSRTLNQ 100 Query: 98 LPT--MQRGVLIVPVNTLMQRVCPHSFLHGHALVMK-KGQRLSRDALRTQLDSAGYRHVD 154 L + VLI V +L+ V P L+ +L++K ++ + + L G+ + Sbjct: 101 LLQNRGEPQVLICSVASLLCAVTPPGLLNSQSLILKLADEQYAPEKLCEIFTEMGFDNEA 160 Query: 155 QVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPA 214 QV GE++ RG +LD+F + P R+DFFDDEIDSLR+FDVDSQ+++ + ++ + P Sbjct: 161 QVSLPGEFSLRGGILDVFSPDQKFPVRIDFFDDEIDSLRLFDVDSQKSIADAKSYQVSPV 220 Query: 215 HEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFS 274 + + I + + L Sbjct: 221 EKCGLEPRGI--------------------LEYIKGFKLC-------------------- 240 Query: 275 YFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW 334 +V ++ ER+Q + + + EL S++ Sbjct: 241 -------VVEEESIDRHLERYQEKVQLSLWDEIKNSI--------------ELVSDIDIQ 279 Query: 335 PRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGR 394 +K + A ++ QA QK +D ++ ++ VF SE Sbjct: 280 ADYNIKDFPVAALAPVYRSTLPEVERSIHQAHQKFLIDRVKSWINKSWSVHVF-CGSEAG 338 Query: 395 REALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERV 454 E L E+L + L + +GF+ A++ E +L G R Sbjct: 339 VERLNEVLELGN-------------KKNLLLYPVSLHYGFIVPELKYAVLSEQELFG-RP 384 Query: 455 ARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA 514 +D + + EL+ G VH +G+ RY G+ + E+L+L +A Sbjct: 385 IEETKDVSYSSQLQKNLEYEPELNEGDFAVHANYGICRYLGIKVKN----SQEFLLLEFA 440 Query: 515 NDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQ 574 +D KLY+P+ S HL+ RY GG + L +LG W ++ KA RD AAELL + A Sbjct: 441 DDRKLYLPLDSSHLLMRYIGGKKSVPKLARLGTGFWQKSLDKAENSARDYAAELLRLQAA 500 Query: 575 RAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGK 634 R EG +F D LF +SFP+E TPDQ AI V DM + MDRL+CGDVGFGK Sbjct: 501 REHSEGISFPKDNHWQSLFEESFPYEETPDQLSAIEEVKKDMERAKPMDRLLCGDVGFGK 560 Query: 635 TEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQ 694 TEVAMRAAF AV + QVA++VPTT+LAQQH+ +F R +++P++I +SRF S K+Q Q Sbjct: 561 TEVAMRAAFKAVMSSHQVAIVVPTTVLAQQHFHSFSQRMSDFPIKIATLSRFISKKDQKQ 620 Query: 695 ILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTL 754 +L E+AEG++DI++GTH+LLQ D+ F+ LGLL+VDEE RFGV KE +K MR NVDIL++ Sbjct: 621 VLKEMAEGEVDIVVGTHRLLQKDINFQKLGLLVVDEEQRFGVESKEALKRMRVNVDILSM 680 Query: 755 TATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYY 814 +ATPIPRTL ++M+G+RD S I T P R V+T V + + ++ AI RE+ RGGQVYY Sbjct: 681 SATPIPRTLYLSMTGLRDFSTILTAPHNRKPVRTIVTKENDEIIEVAIRRELERGGQVYY 740 Query: 815 LYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874 L+N V+ I+ A +L PEA I IGHGQM E ELE VMN+F +LVCTTIIE+G Sbjct: 741 LHNRVKTIENVALKLKRQFPEANILIGHGQMDEEELEMVMNEFTDGDGQILVCTTIIESG 800 Query: 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIA 934 +DI ANT++I+RAD FGL+ L+QLRGRVGR H QAY +LL P +A+ +A++RL A+ Sbjct: 801 MDIRNANTMVIDRADRFGLSSLYQLRGRVGRDHRQAYCYLLMPRDEAIMDNAKERLSALR 860 Query: 935 SLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSL 994 GAGF LA DLEIRGAG +LG +QSG + +GF LY +LL+ +V+ LK Sbjct: 861 KHTHPGAGFKLAMRDLEIRGAGNMLGSQQSGHIAAVGFELYCQLLKKSVEDLKGSIHQDT 920 Query: 995 EDLTSQQ------TEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELID 1048 S ++ ++P L +I + RL YKR ++A NE+ ++ EL D Sbjct: 921 STSFSADFIHYGFQSIDNKIPVALTPQYIESDDVRLEMYKRFSTAVKYNEIISLEDELKD 980 Query: 1049 RFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQK 1106 RFG + + I +++ L E E +E + + + L QK Sbjct: 981 RFGNFTSEVKAYVVIHKIKSLCNLLEFHSCEIKESSLYLEGNDGLYCEARKIPKLKQK 1038 >UniRef50_C7M0K8 Transcription-repair coupling factor n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M0K8_ACIFD Length = 1131 Score = 939 bits (2427), Expect = 0.0, Method: Composition-based stats. Identities = 363/1126 (32%), Positives = 567/1126 (50%), Gaps = 40/1126 (3%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLPYDS 80 L+ A A +A +V++A + A + +++ + + V L W+TLP++ Sbjct: 28 LSAAGVALAWHRLA---PRRMVVVAEGDREAEAIANDLRWWLPRIPVALLPPWDTLPFER 84 Query: 81 FSPHQDIISSRLSTLYQLPT--MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 P ++RL L + + V++ V + ++ + L++ +G L R Sbjct: 85 VVPSMGTTAARLRALASIVDPPDEGIVVVTTVRAALTKLVASAA-RLERLIVARGDELVR 143 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVD 198 D L T L+ AGY QV GEYA RG+++D+ G P R+D F DE+D L FD Sbjct: 144 DELITWLEDAGYVREPQVSAAGEYAVRGSIVDVADPGLASPVRIDLFGDEVDRLAFFDPT 203 Query: 199 SQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIE 258 +QR++ ++E + L PA E D + + V E + G P E Sbjct: 204 TQRSVGDLERVELFPAREVRIDTDLAKQLEALAARVPAVADRVEAVL----AGREPP--E 257 Query: 259 YWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQ 318 PL + P + L++ + AD L E + + P + Sbjct: 258 PLVPLVLGDVAPTVLDIVDEADLVLVP---AKGMDAVIADRLVAEERSIREALAPTWGLE 314 Query: 319 SLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFL 378 + L L +E + V+ + A LG V + ++ Sbjct: 315 ADALGSVSLMAEPERLRAVRARLVSADPAGFGARLGVSHRDLAGVFGRIRS--------A 366 Query: 379 ETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIG-AAEHGFVDT 437 VV + R + + L I Q G + G Sbjct: 367 RRDGVHVVVATHGSERARHVAQRLGEEGIDVQLASVATCLEGHGVRVAAGLDLVESVELE 426 Query: 438 VRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMT 497 +L +I ++ L+ R +R T + +L G VVH +GV RY G+ Sbjct: 427 PASLVVIADASLVRPTAPRASVPTRTTGG-----LSFDDLVEGSFVVHEAYGVARYRGLV 481 Query: 498 TLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKA 557 G++ EYL L +A+ ++++P L L++ Y G E L +L G W R +A Sbjct: 482 RQVVDGVSREYLELEFASADRIFLPFEHLALVAPYVGS--EEPRLTRLRGGDWQRQVHRA 539 Query: 558 AEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMC 617 ++VA EL+ +Y +R A G + D F + FP+E T DQ + I VL+D+ Sbjct: 540 RRAAQEVAQELVVLYQRRLAATGSSITPDPVLLSEFAERFPYELTRDQERTIAEVLADLA 599 Query: 618 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 +P+ MDRLVCGDVGFGKTE+A+RAAF +QV VL PTTLLA QH + FR+RF P Sbjct: 600 KPVPMDRLVCGDVGFGKTEIALRAAFAVASEGRQVLVLAPTTLLAAQHAEVFRERFEGTP 659 Query: 678 VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVR 737 +R+ M+SR +A+E I AE+A G++D+ I TH L + +F LGLL++DEE RFGVR Sbjct: 660 IRVGMLSRLSTAREAASIRAELASGELDVCIATHAALGASTRFARLGLLVIDEEQRFGVR 719 Query: 738 HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV 797 HKE++K VD+L L+ATPIPR+L +++ G+RDLS++ T P R + T V +D V Sbjct: 720 HKEQLKEAFPGVDVLVLSATPIPRSLELSLVGIRDLSVLRTAPVDRHPILTHVGPFDPAV 779 Query: 798 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 857 V EAI RE+LR GQV++++N V +I+ +A +A+LVPEAR+ + HGQ+ LER M F Sbjct: 780 VTEAIRRELLREGQVFFVHNRVRDIEASARLVADLVPEARVLVAHGQLPPAALERTMAQF 839 Query: 858 HHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP 917 H +VLV TTI+E GID+ ANT+I++RA+ GLAQLHQLRGRVGRS QAYA+LLT Sbjct: 840 WHGEADVLVATTIVENGIDLARANTLIVDRAEQLGLAQLHQLRGRVGRSGRQAYAYLLTS 899 Query: 918 HPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYME 977 ++ A +RL +A DLGAG+ +A DLE+RGAG +LG QSG + +G+ LY+ Sbjct: 900 TTGGISDIALERLRTVAENTDLGAGYRIAMRDLELRGAGTVLGMRQSGHVSEVGYELYVR 959 Query: 978 LLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTEN 1037 L+ V + EP+ + + +++ + +LL +D++ + TR+ Y+R+A A+++ Sbjct: 960 LVAEEVARMDGVEEPTPDR----EVALDVPVSALLAEDYVAEAETRMDLYRRLARARSQA 1015 Query: 1038 ELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRK--LEGNEKGGVIEFAEKN-H 1094 E ++ EL DRFG P A L+ +A+ R++ LG + N + +E Sbjct: 1016 EFDQFLEELRDRFGPPPAEALALVSLAKARRRLATLGADHALVRRNPRSARLELVVGPLQ 1075 Query: 1095 VNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMR 1140 + A + L ++ + + + R+E + + + Sbjct: 1076 PSVATRLRLERRLHGVVSRGDDLAVPLARR-EDALGRLEALLEILE 1120 >UniRef50_A1BEU9 Transcription-repair coupling factor n=12 Tax=Chlorobiaceae RepID=A1BEU9_CHLPD Length = 1127 Score = 935 bits (2418), Expect = 0.0, Method: Composition-based stats. Identities = 352/1152 (30%), Positives = 566/1152 (49%), Gaps = 126/1152 (10%) Query: 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET 75 + L G+ + L + PV+++ + + +++ ++ E Sbjct: 73 PVEVTGLKGSLSSVLACTLFSESDCPVLVV-SGQTSFEKYENDLGGLLPHAPVHTFSDE- 130 Query: 76 LPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 LP L L + +++ + L+ + S + + Sbjct: 131 LPL---------------ALVALVQKKNPLILSSFDDLLLPLSSPSEALEKLFTLAVEKE 175 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 + L + L G+ + V + GE++ RG+++D+F G+++P R++FF + + SLR F Sbjct: 176 AGYEKLLSFLAENGFEPREFVEDEGEFSVRGSIVDVFSFGAKVPLRIEFFGNTVSSLRTF 235 Query: 196 DVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPA 255 D++SQ + + + A L + A ++ Sbjct: 236 DINSQLSQKTLTAAELTGN----FNPAESSKASAEIV----------------------- 268 Query: 256 GIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLL 315 L Y P +T+++ E SA Sbjct: 269 ----------------LADYLPLSTIIIIDDCTELSA----------------------- 289 Query: 316 PPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALR 375 + L + L + ++++K A+ + F A + L+ Sbjct: 290 -----FENACSLEAALSGFRQIKIKP------ASGIAIDFHSSAQEKYNANFRLLASRLQ 338 Query: 376 KFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFV 435 K ++ VF+ S E L + +A I + + GF Sbjct: 339 KESDS-GRRTVFAASSRREIEELADFIAE------EIHGAETEQTIEADWIPVTLYTGFT 391 Query: 436 DTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAG 495 L L ESD+ G+ + R+ +++L +L +G VVH +G+GR+ Sbjct: 392 FGD--LDLYTESDIFGKFHTPKGHHKRKI--KGISLKDLQKLKVGDYVVHENYGIGRFKT 447 Query: 496 MTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQ 555 + T+ G E +++ Y +L+V V +++L+S+Y L KLG W + Sbjct: 448 LETISVGNSEQECVLVEYEGGDQLFVNVQNINLLSKYTASEGSLPSLSKLGSSKWGAKKD 507 Query: 556 KAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSD 615 K K+RD+A L+ IYA+R EGFA D + F SF F+ TPDQ +AI V D Sbjct: 508 KVRRKLRDIAINLIKIYAKRKMTEGFACCADTIFTREFEASFVFDETPDQLKAIEEVKKD 567 Query: 616 MCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 M MDRL+CGD GFGKTE+AMRAAF AV++ KQVA+L PTT+LA QH ++F RF N Sbjct: 568 MQASHPMDRLICGDAGFGKTEIAMRAAFKAVESKKQVAILTPTTILAHQHGESFTRRFEN 627 Query: 676 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFG 735 +P+ I ++SRF + K+Q +I+ ++ G+IDI+IGTH+L+ DV FKDLGLL++DEE FG Sbjct: 628 FPISIAVLSRFVARKDQEKIIEKIKAGQIDIVIGTHRLVSKDVLFKDLGLLVIDEEQHFG 687 Query: 736 VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDS 795 V KE+++ VD LT++ATPIPRTL +M G RDLSI++TPP R V+T + YD Sbjct: 688 VEVKEKLRDSFPGVDSLTMSATPIPRTLQFSMLGARDLSIVSTPPKNRQPVETILTGYDP 747 Query: 796 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMN 855 +++ AI E+ R GQV++L+N + +++ + L +LVP ARI I HGQM +ELE+VM Sbjct: 748 TIIQSAIRHELQRDGQVFFLHNRISGLEEVQQTLRDLVPYARIVIAHGQMPSKELEKVMM 807 Query: 856 DFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLL 915 DF + +VL+ T+II +G+DI ANTIII RAD FGL+ L+QLRGRVGRS +A +++ Sbjct: 808 DFMQKEIDVLISTSIISSGLDISNANTIIINRADMFGLSDLYQLRGRVGRSERKASCYMI 867 Query: 916 TPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLY 975 TP + +A +RL I S +LG+GF +A DL+IRGAG LLG EQSG + +GF LY Sbjct: 868 TPPLNTLKKEAVQRLAVIESFTELGSGFTIALRDLDIRGAGNLLGAEQSGFIHELGFDLY 927 Query: 976 MELLENAVDALKAGR-------EPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYK 1028 ++LE V LK+ E S L S+ ++ +L+PD +I ++ R +FY+ Sbjct: 928 QKMLEETVAELKSTEFYQLFSNEESPAVLPSKPCDLAFFFDALIPDFYISAIHERFAFYE 987 Query: 1029 RIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE 1088 +I+ A +E L+ E+ DRFG LP+ LL +A+L+ A GI K++ + + Sbjct: 988 KISRATSEEVLDSFHSEMKDRFGELPEEVANLLLLAKLKIAASAAGIDKIDIQPETFTMF 1047 Query: 1089 FAEKNH---VNPAWLIGL--------LQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQ 1137 ++ + N + L +Q ++ D +L KT +R+ Sbjct: 1048 LPDQTNETIANSTFFHYLFLAVQEPWMQDYKPGFKADKKMKLVLRHPKESDKTPAVLLRK 1107 Query: 1138 ---FMRELEENA 1146 +++LE+ + Sbjct: 1108 YRDLLKKLEQRS 1119 >UniRef50_Q2GHL2 Transcription-repair coupling factor n=5 Tax=canis group RepID=Q2GHL2_EHRCR Length = 1134 Score = 935 bits (2418), Expect = 0.0, Method: Composition-based stats. Identities = 330/1133 (29%), Positives = 580/1133 (51%), Gaps = 51/1133 (4%) Query: 19 LGELTGAACAT-LVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETL 76 + + ++ ++ + I L + ++ W ++ Sbjct: 7 IFNIPQTLEPLVIIKMYIKKLIHSAIYIVNQETQLHNLASIFKFYVPNLEIIIFPAWNSI 66 Query: 77 PYDSFSPHQDIISSRLSTLYQLP---TMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKG 133 PY SPH +++ R+ TLY L ++I +N + Q+V + + L + Sbjct: 67 PYKKNSPHNSVMAERIKTLYSLITRHNDNPYIIISTINAITQKVLHQNIILQSVLKITSL 126 Query: 134 QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193 Q ++++ + L + GY V + GE+AT ++D+FP + P R+ ++ I S+ Sbjct: 127 QNITKNHIEDYLTNHGYSQYSIVQDIGEFATYNNIIDIFPTTYKNPIRIHLNNNLIQSIH 186 Query: 194 VFDVDSQRTLEE--VEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKG 251 F+ +Q + + + P E K I++F ++ ++ + + G Sbjct: 187 YFNRQTQLIDNNSSLNEVVIYPTSEIIKQKKNIDIFSKTYKTKPNQDQN---LLNTIISG 243 Query: 252 TLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPM 311 G E + PLF+ E L +F+Y NT L+ L + + + ++ Sbjct: 244 KKHIGEENFLPLFYKEELQNIFNYISQNTTLIFNDKLINEIKEYNNQIYLNYRSQL---- 299 Query: 312 RPLLPPQSLWLRVDELFSELKNWPRVQLKTEH------------LPTKAANANLGFQKLP 359 +PP L++ +E K + + + T + N Q +P Sbjct: 300 SYQVPPPQLYVDSEEFKIITKQFHKTIFSQSDNTSNNSAYTDRNIHTSSFNITEKIQNVP 359 Query: 360 DLA--VQAQQKAPLDALRKFLET--FDGPVVFSVESEGRREALGELLARIKIAPQRIMRL 415 + VQ +Q + L ++++T ++ + S G E + L + I +I Sbjct: 360 NFKTLVQNKQIDIFEILTQYIKTTCHTKKLIIACYSTGSLEYIQNRLRTLNIKLCKIENY 419 Query: 416 DEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLA 475 E + I H F+ + +I E DLL ++ + N +I N Sbjct: 420 QEIC-SSYNIAILPIYHSFI--SKYTIVIAEHDLLYKQETTNK------SNISNIISNDT 470 Query: 476 ELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGG 535 L IG V+H ++G+G+ + T + +++ + Y N+ KL++PV +++LIS+Y G Sbjct: 471 NLDIGDIVIHKDYGIGKIVALETTKVFDSYHDFIKIEYYNNDKLFLPVENINLISKY-GQ 529 Query: 536 AEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCD 595 N L KLG +W + + K ++ +A ELL I A R G +F D E Y+ FC+ Sbjct: 530 QNVNVTLDKLGSTSWQQRKTKIKNHIKKIAKELLTIEAARRLSTGKSFFPD-ENYKHFCN 588 Query: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655 F + T DQ QAI + D+ M+RL+CGDVGFGKTE+A+RAAFL + QVA++ Sbjct: 589 EFSYTETEDQLQAIKDMEHDLSSGKIMNRLICGDVGFGKTEIALRAAFLVASQNYQVAII 648 Query: 656 VPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 VPTTLL +QH+ F +RF +P ++I+ +S+ + E + ++ G++ I+IGTH +L Sbjct: 649 VPTTLLCRQHFIVFTERFKKFPNIKIKQLSKIVARSEIKKTKESLSCGQVHIIIGTHAIL 708 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 DV F +L LLI+DEE +FGV+ KE +K ++ NV +++L+ATPIPRTL M++ G++DLS Sbjct: 709 AQDVTFANLSLLIIDEEQQFGVKQKELLKKIKTNVHVISLSATPIPRTLYMSLCGIKDLS 768 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 +I TPP RLAV T+ Y+ ++++AI+RE RGG+V+Y+ + NI+ ++++ +LVP Sbjct: 769 LIKTPPKNRLAVTTYTTYYEETIIKDAIIREHNRGGRVFYVCPQISNIKSISDKIRKLVP 828 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 E ++ HGQ+ +L+ +MNDF +F +L+ T+IIE G+DIP ANTIII AD FGLA Sbjct: 829 EIKMNTAHGQLSPTQLDTIMNDFFDGKFTILLTTSIIECGLDIPFANTIIIHNADMFGLA 888 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QL+QL+GRVGRS + +A+ + + T + +LE I S++ + +GF L+ HD++IRG Sbjct: 889 QLYQLKGRVGRSSTKGFAYFILS--EKATNKSAIKLEIIQSIDSINSGFNLSLHDMDIRG 946 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPD 1014 G L+GEEQSG+++ IG LY ++LE ++ + + + + P+ Sbjct: 947 FGNLVGEEQSGNIKDIGIELYQQMLEEELNIYSEYPKDLDHINININVNIRI------PE 1000 Query: 1015 DFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 +I D+ R+ YK+I S KT+ +++ +EL ++FG LP+ LL+ ++Q +G Sbjct: 1001 HYIQDIGLRMRVYKKIGSLKTKEDIDNYYIELTNKFGKLPNEVENLLNTIYIKQLCANIG 1060 Query: 1075 IRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE 1127 I ++E + +++ + ++ P +++ + L I + S Sbjct: 1061 IYEVEQIKNSILLKIDSNTTLK-QKILNYFINNPLTFKIQNNSILMLINNSSN 1112 >UniRef50_D1N873 Transcription-repair coupling factor n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N873_9BACT Length = 1098 Score = 934 bits (2414), Expect = 0.0, Method: Composition-based stats. Identities = 384/1101 (34%), Positives = 549/1101 (49%), Gaps = 94/1101 (8%) Query: 39 AGPVVLIAPDMQNALRLHDEISQF-----TDQMVMNLADWETLPYDSFSPHQDIISSRLS 93 P++ P++ A R E+ +F ++ + E P + S R Sbjct: 50 NAPLIAAFPELNLAERAVAELEEFRQELDLPLRLLVIP--EAGRGKLLFPGGE--SRRAR 105 Query: 94 TLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHV 153 L T + +++ V+ L+ L +K G L L +L Y Sbjct: 106 ALNAALTGEFDLVVGSVHALLAPAPAPETTVEAQLTLKAGMELPMAELLEKLVRLDYDDE 165 Query: 154 DQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLP 213 + GE+A RG ++D+F + P R++FF D IDSLR F ++QR+ VE + Sbjct: 166 YEATVSGEFARRGGIIDIFSPAHDFPCRVEFFGDTIDSLRSFAPETQRSTGAVEEYRV-- 223 Query: 214 AHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273 +A I + D F + ++ + T IE + Sbjct: 224 -----IGRAGITAGGAADSDLFAYFEERDYRLLTLYPSTARERIERYSG----------- 267 Query: 274 SYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKN 333 LARF+ D R ++ EL Sbjct: 268 -----------------------EAALARFDALARD--REAAGRAQVFCDATELSLYQDA 302 Query: 334 WPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEG 393 P L + G L ++K ++ LR+ +VF Sbjct: 303 VPADVLPPLGAAESLISGEAGESALEL-----RRKLLVEQLRQAARE-GARIVFLAPHAD 356 Query: 394 RREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGER 453 L +A R GF L + E +L+ Sbjct: 357 NIPVLEAWCRGHGLA-----------GRNFSFEPACIGAGFAIPAEQLIAVTERELVNAG 405 Query: 454 VARRRQDSRRTINPDTLIRN----------LAELHIGQPVVHLEHGVGRYAGMTTLEAGG 503 R + S + + LA+L G VHL+HG+G + G TLE+ G Sbjct: 406 FTREGRSSESDVVAPAASADEEPIRVPEFSLADLDEGDYAVHLDHGIGIFRGFKTLESRG 465 Query: 504 ITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRD 563 I E L++ Y + LYVP+ H +SRY G A + LH LGG W+R ++ A V Sbjct: 466 IGREVLVMEYKDGQLLYVPLLQAHKVSRYLGAAG-HVTLHSLGGARWNRDKESARRSVHS 524 Query: 564 VAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMD 623 AA++L + A R + G + D + + F +FPF TPDQ+++ + DM P MD Sbjct: 525 YAADMLRLQAMRQSAPGIVYPPDTAETKAFLRAFPFRDTPDQSRSTAEIRRDMESPRPMD 584 Query: 624 RLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMI 683 RL+CGDVG+GKTE+AMRAAF AV QVA+L PTT+LAQQHY +FR+RFA +P I+++ Sbjct: 585 RLLCGDVGYGKTEIAMRAAFKAVSAGYQVAILAPTTVLAQQHYYSFRERFAAYPYTIDVL 644 Query: 684 SRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIK 743 SRFR+A EQ I+ +V G IDILIGTH+L D+KF++LGL+++DEE RFGV+HKER++ Sbjct: 645 SRFRTAAEQNAIMQKVRSGGIDILIGTHRLCNPDLKFRNLGLVVIDEEQRFGVKHKERLR 704 Query: 744 AMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAIL 803 RA VD+LT++ATPIPRTL +AM+G RDLS + T P +RL VKT + D M V +AI Sbjct: 705 RFRAEVDVLTMSATPIPRTLYLAMAGARDLSTLMTAPKQRLPVKTVIAPEDEMQVAQAIR 764 Query: 804 REILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFN 863 E+ RGGQVYYLYN V I++ A++L LVPEA+ A+ HGQM E ELE +M F + + Sbjct: 765 AELARGGQVYYLYNRVRTIEEKADKLRALVPEAKFAVAHGQMNEHELEAIMTSFLEGKID 824 Query: 864 VLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMT 923 LVC+TIIE+G+D+P ANTIIIERAD FGLA+L+QLRGRVGR HQAYA++L P + ++ Sbjct: 825 CLVCSTIIESGLDVPNANTIIIERADRFGLAELYQLRGRVGRWTHQAYAYMLLPKSQLVS 884 Query: 924 TDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAV 983 TDA+KRL AI +LGAGF LA HDLEIRG+G LLG EQSG + +IGF LY +LL+ V Sbjct: 885 TDARKRLSAIRRCSNLGAGFQLALHDLEIRGSGNLLGSEQSGHLNSIGFDLYCQLLKQEV 944 Query: 984 DALKAGREPSLEDLTSQQTEVEL----------RMPSLLPDDFIPDVNTRLSFYKRIASA 1033 L+ +E L + ++ +P+ P D+I RL Y+R+ + Sbjct: 945 SRLRGE---QVEFLPEVEVAIDFVSFTLNAPPGVLPAAFPPDYIGGERLRLDAYRRLGAL 1001 Query: 1034 KTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKN 1093 +E ELE+ EL DR+G LP A LL + RLR + G + ++ Sbjct: 1002 ASEAELEDFANELRDRYGKLPKCAENLLAVIRLRLLVARAGYELFTVADGRVILRNPGGT 1061 Query: 1094 -HVNPAWLIGLLQKQPQHYRL 1113 + + + L + P R+ Sbjct: 1062 VYRDGGLVPTLDYRDPPELRM 1082 >UniRef50_B1H078 Transcription-repair coupling factor Mfd n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H078_UNCTG Length = 1048 Score = 933 bits (2412), Expect = 0.0, Method: Composition-based stats. Identities = 334/1153 (28%), Positives = 553/1153 (47%), Gaps = 139/1153 (12%) Query: 16 QRLLGELTGAACATLVAEIAERHAG------------PVVLIAPDMQNALRLHDEISQFT 63 + L + G+ A + + D +D++ F Sbjct: 3 KIYLSGIGGSGKAHYLFRRISEMRSSIGGDINEVSDFRMFAFVKDE-ELSSFYDDLHSFF 61 Query: 64 DQMVMNLADWET-LPYDSFSPH--------QDIISSRLSTLYQLPTMQRGVLIVPVNTLM 114 + D E +P S D + R ++ ++ ++ ++ Sbjct: 62 NSAFHTPQDCELDVPVVKSSHSAPDIFILPSDNMQQRTFATDKIKNLKSFIVCATDISIN 121 Query: 115 QRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPM 174 V + + + + Q+ L T L S GY V + ++A RG ++D++ + Sbjct: 122 SPVL--DSKNNIGINVAQNQKCDFSNLVTSLSSFGYTRTSFVEDKLQFAVRGEIIDVWTV 179 Query: 175 GSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDT 234 E+P R+ F + ++++RVFD +SQ + + I + Sbjct: 180 AGEMPVRILFKYNTVEAIRVFDPESQLSNVFISEIKI----------------------- 216 Query: 235 FEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF----PANTLLVNTGDLET 290 P+ FSE + YF NT+L + Sbjct: 217 --------------------------LPVSFSECNSTIKDYFDINDKENTMLYFDYLIGE 250 Query: 291 SAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAAN 350 AE+ L +++ + + + + T Sbjct: 251 EAEKSFDKYE---------------------LIINDPLNAISQYQGYKSFT--------- 280 Query: 351 ANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQ 410 Q ++L+ F E D + ++ RE + +L + + Sbjct: 281 -----------GFQGNVNLFFNSLKDFAEN-DVKIKIYCANDSDRERISDLFYENRWNYK 328 Query: 411 RIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTL 470 + G+ GF + I ++L +++ S I + Sbjct: 329 NPE-----------FLYGSLSRGFYLENAKVTCISSREMLY----KKKPVSFPKIRGGSR 373 Query: 471 IRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 + + E+ G VVH ++G+GRY G+ T+ EYL + Y N KLY+P + I Sbjct: 374 LEGIWEILAGDYVVHEKYGIGRYIGLKTISRENSISEYLCIEYKNGDKLYIPPEQIKTIK 433 Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 +Y G L+ + AW R + +A E A ELL +Y QR+ + F Sbjct: 434 KYIGVEGVKPKLYSMDTLAWERVKSRAREAAAKFAEELLKLYVQRSLIKRKPFGPGTAWE 493 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 + ++FP++ TP Q +AI + +D +P M+RLVCGDVG+GKTEV +RAAF AV Sbjct: 494 KELENTFPYDETPGQLKAIEDIKNDFLKPYPMERLVCGDVGYGKTEVVVRAAFKAVHESM 553 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Q A+LVPTT+LAQQHY+ F DR + +P+++ ++SRF++ +Q +I ++ G IDI+IGT Sbjct: 554 QTAILVPTTVLAQQHYNTFCDRLSPFPIKVAVLSRFQTKAKQKEITQDLENGLIDIIIGT 613 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H+LLQ DVKFK+LGLL++DEEHRFGV+ KE+IK+M+ N+DIL L+ATPIPRTL+ ++SG Sbjct: 614 HRLLQKDVKFKNLGLLVIDEEHRFGVKQKEKIKSMKKNIDILMLSATPIPRTLSSSLSGF 673 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 RDLS+I TPP RL ++T + YD +++ I E+ R GQV+Y+YN +E I A + Sbjct: 674 RDLSVIETPPFGRLPIETSISLYDENLIKNIIEAELSRNGQVFYVYNKIETILTKAASIR 733 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 ELVP ++ I +GQM+ +++E +M F + +VL+ TTIIE+G+DIP+ NT+IIE ++ Sbjct: 734 ELVPGIKLGIIYGQMKAKDIEEIMWKFINMELDVLLATTIIESGLDIPSVNTMIIEEVEN 793 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 FGL+QL+QLRGR+GR +AY +L K ++ +A KRLEAI +LG+GF LA DL Sbjct: 794 FGLSQLYQLRGRIGRDRKKAYCYLFY-KDKTLSDEAVKRLEAIREFGELGSGFRLALKDL 852 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS 1010 EIRGAG +L Q G + IG+ ++ +LLE +K ++E + T ++L++ + Sbjct: 853 EIRGAGGILSSSQHGFVRDIGYDMFAKLLEEEGKKVKG---DAVESQEKKNTVIDLQINA 909 Query: 1011 LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQA 1070 L+P +I + R+ FY+++++A+ +E IK EL+DRFG +P+ + L +I LR A Sbjct: 910 LIPPTYIEGEDIRILFYRKLSNAQNIKAIENIKNELLDRFGKIPNETQMLFEITNLRLTA 969 Query: 1071 QKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERK- 1129 +KL I ++ + + F+ K + A + L + F Sbjct: 970 EKLDIERIAEDNNYIYLYFSRKADFSKADITKLTNDYSRIIEFITGKYYAFKLKKDMIDT 1029 Query: 1130 TRIEWVRQFMREL 1142 +E++ +F+ L Sbjct: 1030 NTVEYLEKFLSCL 1042 >UniRef50_O51568 Transcription-repair-coupling factor n=24 Tax=Borrelia RepID=MFD_BORBU Length = 1125 Score = 932 bits (2408), Expect = 0.0, Method: Composition-based stats. Identities = 315/1131 (27%), Positives = 572/1131 (50%), Gaps = 46/1131 (4%) Query: 19 LGELTGAACATLVAEIAERHA-GPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLP 77 L G A L+ +I E G ++LI D ++ +++ T + L + L Sbjct: 32 LTGYEGFFKAFLIKKIKEYSKTGKIILIVKDEHTLDKIKNDLQVIT-NQIFELNYFSPLV 90 Query: 78 YDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLS 137 Y I + R+ L+ G+ I + +L+ ++ + L + ++K ++ Sbjct: 91 YKGIGSKSTIFNERIKFLFNFYKKNPGIYITVLKSLLSKIPDKNTLLKNIYKIEKNTNIN 150 Query: 138 RDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDV 197 + L + GY +V GE+ +G ++D++P G + P R+ D+I+ ++ F+ Sbjct: 151 TADIEKTLITLGYEKTLRVTIPGEFTVKGEIIDIYPFGEQNPIRIALNFDKIEEIKKFNP 210 Query: 198 DSQ-RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAG 256 +Q + E+ +LP E D I +++ + + + I +++ Sbjct: 211 LTQLKHDNEILEFQILPKKEIIWDDKTINTLKTKIKSV-----EYKKILEELDFKKETKT 265 Query: 257 IEYWQPLFFSEPLPPLFSYFPANTLL--VNTGDLETSAERFQADTLARFENRGVDPMRPL 314 E + PL + L +T + + E E+ + + + + + Sbjct: 266 EEMFYPLVAN---TYLGDEIEKHTPIVNFEINNFEKEIEKIHQEYEKLY-KEAEEAGKNI 321 Query: 315 LPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDAL 374 + P+ + L + + + + + F+ + + + Sbjct: 322 IDPKRILLNYKTFNLKSDVL------FSKIKSLKSKETIEFKIESERNFFSNIALTKEEF 375 Query: 375 RKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGF 434 +L+ ++ + ESE ++E L + + ++++ + + + E Sbjct: 376 ENWLKN-GFKIIIAAESESQKEKLKYIFKELPKVSIEVLKISSSLIIEKEKIAIILESNI 434 Query: 435 VDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYA 494 +T + + + I + E+ VVH+ HG+G + Sbjct: 435 FNTGQKIN------------------KAFESSKTKAIDSFVEIEKNSHVVHINHGIGIFR 476 Query: 495 GMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRAR 554 + ++ + +Y+ + YA KL++P+ +LI +Y G +N L K+ W + + Sbjct: 477 QIKRIKTSSLEKDYIEIEYAEGEKLFIPIEQTNLIQKYIGSDPKNIKLDKISSKTWIKNK 536 Query: 555 QKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLS 614 A +++ ++A +L+++Y++R + +G + D E LF FP++ TPDQ +AI + Sbjct: 537 ANAKKRIEEIADKLIELYSKRESIKGIKYPEDNELQLLFESEFPYDETPDQIRAIKEIKE 596 Query: 615 DMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA 674 DM MDRL+CGDVGFGKTEVAMRAAF AV +KQV VL PTT+LA+QH++ F+ RF Sbjct: 597 DMMSFKVMDRLLCGDVGFGKTEVAMRAAFKAVMGNKQVIVLSPTTILAEQHFNTFKKRFK 656 Query: 675 NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRF 734 N+P++IE++SRF +++IL E+ GKIDI+IGTHK+L K+LGL+I+DEE RF Sbjct: 657 NFPIKIEVLSRFIKNNAESRILKELKSGKIDIIIGTHKILSKKFTCKNLGLIIIDEEQRF 716 Query: 735 GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYD 794 GV+ KE++K +R +VD L L+ATPIPR+L+M++ +RD+S++ PP R+ ++ ++ + Sbjct: 717 GVKEKEKLKEIRISVDCLALSATPIPRSLHMSLIKLRDISVLKIPPQNRVKIEAYLESFS 776 Query: 795 SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 854 ++++ AI E+ R GQV+ + +++E + + L P ARIAI HG++ E+E +M Sbjct: 777 ELLIKHAIESELSRDGQVFLVNHNIEELYYLKTLIERLTPYARIAIIHGKLTGEEIENIM 836 Query: 855 NDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL 914 ++F + + +L+ TTIIE GIDIP ANTIII A+ FGLAQL+QL+GRVGR +AYA+ Sbjct: 837 HNFIKKAYQILLATTIIENGIDIPNANTIIINNANKFGLAQLYQLKGRVGRGSQKAYAYF 896 Query: 915 LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSL 974 L + + + +RL AI +LGAGF +A D+EIRG G LLG EQ G +E+IG Sbjct: 897 LYQDSEKLNERSIERLRAITEFSELGAGFKIAMKDMEIRGVGNLLGREQHGEIESIGLDY 956 Query: 975 YMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK 1034 Y+ +L A++ E + ++++ +P+++ + ++ YK+I + Sbjct: 957 YLTMLNKAIEKKMGKISSDEE-----EVDIKINYSGFIPENYAKNEQDKILIYKKIFKIQ 1011 Query: 1035 TENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH 1094 TE E ++I+ EL + FG +P+ +LL +A L+ A+ L I KL+ + IE+ Sbjct: 1012 TEEESKKIRSELHNDFGPIPEEINSLLMLAELKILAKDLNITKLKEKNRALEIEYKNIES 1071 Query: 1095 VNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERK--TRIEWVRQFMRELE 1143 + +I +LQK P L+ + + +I ++ + + L+ Sbjct: 1072 IPMEKIIEILQKHPNLLILNPSYQKSIFLSFKNIEKSEKINYIYKNINLLK 1122 >UniRef50_Q255X7 Transcription-repair coupling factor-superfamily II helicase n=13 Tax=Chlamydiaceae RepID=Q255X7_CHLFF Length = 1084 Score = 931 bits (2406), Expect = 0.0, Method: Composition-based stats. Identities = 364/1132 (32%), Positives = 550/1132 (48%), Gaps = 86/1132 (7%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL 70 + L+ + A L A+ V++I L +++S F + Sbjct: 19 INTSTPLLIENIRPGARGFLAAKFFHERKKSVIMIT-TRSCIDDLLEDLSSFLGFPPLEF 77 Query: 71 ADWETLPYDSFSP---HQDIISSRLSTLYQLPTMQRGVL-IVPVNTLMQRVCPHSFLHGH 126 E SP + D + R LY+L + V + + L+++ Sbjct: 78 PSSEI----DLSPKLVNIDAVGKRDKILYELCEKKSPVFCVTTLKALLEKTRSPKDTVHQ 133 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 L ++ G L D + + GYRH + GE+A RG ++D+FP+ S+ P+R++F+ Sbjct: 134 HLDIQVGDLLDPDMMIDLCKNLGYRHETLARDKGEFAYRGGIIDIFPLSSQEPFRIEFWG 193 Query: 187 DEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQ 246 ++I S+R F+ Q + +V +++ PA + E+ D F Sbjct: 194 EKIISIRPFNPSDQLSTGKVSKLSISPAT----KDSGKEVLSHCLLDYFHT--------- 240 Query: 247 QVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENR 306 P F + L L F + RF Sbjct: 241 --------------PPAFIFDNLARLEDDFSE-------------ISGTLSSLPNRFLPI 273 Query: 307 GVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQ 366 R L P + + + V ++ H KA+ F + + + Sbjct: 274 QYLCERALQSPTIFFEEKNFPNAHTVKNNEVNIEVFHRDVKASRLVAPFVYPNETIDKHE 333 Query: 367 QK--APLDALRKFLETFDGPVVFSVESE----GRREALGELLARIKIAPQRIMRLDEASD 420 L L++++ + + ++ AL E L I Sbjct: 334 NPPLGFLQKLQEYIPNKEPLNIAVYNTKSKSLKEARALIETLEENSIH------------ 381 Query: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 Y G F A I S+ ++ RR++ + G Sbjct: 382 --IYEKSGNLSSSFALVKERFAAISLSEFTSTKILRRQKQRNYFSVTTEEVFVPI---PG 436 Query: 481 QPVVHLEHGVGRYAGMTTL-EAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 + VVHL +G+G++ GM I +YL+L YA+ A+LYVP +LISRY G +E+ Sbjct: 437 ETVVHLHNGIGKFIGMEKKPNHLNIETDYLVLEYADKARLYVPSDQAYLISRYVGTSEKT 496 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599 LH L G W R+R + + + A +LL + AQR+ F + E+ F + FP+ Sbjct: 497 PDLHNLNGSKWKRSRDLSEKSLVLYAEKLLQLEAQRSTAPSFIYPPHGEEVMKFAERFPY 556 Query: 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-KQVAVLVPT 658 E TPDQ +AI + SDM MDRL+CGD GFGKTEV MRAA AV + +QV V+VPT Sbjct: 557 EETPDQLKAIEQIYSDMMSDKLMDRLICGDAGFGKTEVIMRAAVKAVCDGHRQVIVMVPT 616 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 T+LA QHY+ F R A P++I ++SRF K + +I + A+G +DILIGTHKL+ ++ Sbjct: 617 TILANQHYETFSQRMAGLPIKIAVLSRFSEGKAKKKIFEDTAKGDVDILIGTHKLINKNL 676 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 +FK+ GLLI+DEE RFGV+ K+ +K VD LT++ATPIPRTL M++SG RDLS+I Sbjct: 677 EFKNPGLLIIDEEQRFGVKVKDFLKERYPMVDCLTVSATPIPRTLYMSLSGARDLSLITM 736 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 PP RL V TF+ E++ + A+ E+LRGGQ Y ++N +E+I + + LVPEARI Sbjct: 737 PPLDRLPVSTFILEHNDETLSAALRHELLRGGQAYVIHNRIESIFRLGNTIRTLVPEARI 796 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 A+ HGQM EL + F Q NVLV T +IE GIDIP ANTI++++AD FG+A L+Q Sbjct: 797 AVAHGQMSSDELASIFQKFKDQEINVLVATALIENGIDIPNANTILVDQADKFGMADLYQ 856 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 ++GRVGR + +AY + L PH ++ A KRLEA+ ++ G G +A HDLEIRGAG + Sbjct: 857 MKGRVGRWNRKAYCYFLVPHLDRLSVPAAKRLEALNK-QEYGGGMKIALHDLEIRGAGNI 915 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIP 1018 LG +QSG + IGF+LY +LL+ V ALK P+L + ++E S +PD +I Sbjct: 916 LGTDQSGHISAIGFNLYCKLLKKTVAALKNNTSPAL---FNDDVKIEFPYKSRIPDTYID 972 Query: 1019 DVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 + R+ FY++I A+ +L+ IK E+ DRFG LPD L +A+LR A K I + Sbjct: 973 LASMRIEFYQKIGGAEDAEQLDLIKEEMRDRFGPLPDEVLWLFALAQLRLFALKHNISSI 1032 Query: 1079 EGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKT 1130 +G I+ +NH + K+ Y L L + L + Sbjct: 1033 KGTGNALYIQ---QNHGKTEQI-----KKTLPYSLSPTPELLVSEVLESIEK 1076 >UniRef50_C7H0W1 Transcription-repair coupling factor n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7H0W1_9FIRM Length = 1092 Score = 916 bits (2368), Expect = 0.0, Method: Composition-based stats. Identities = 356/1155 (30%), Positives = 577/1155 (49%), Gaps = 94/1155 (8%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLA 71 E+ + + +A A ++E + H V L+A ++ ++L + FT + + L+ Sbjct: 2 STAERIEVIGVEASASARYISENIKNHDR-VFLVAATAEDCMQLAAALEYFTKKETIVLS 60 Query: 72 DWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMK 131 Y+S Q+I R + ++ + +R ++IV + +V F AL + Sbjct: 61 KDLFFGYESRDRQQEISFLR--AVKRIASQERCMVIVTPFMINTKVSSAVF--KSALTLT 116 Query: 132 KGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDS 191 GQ +SR+ + QL GY E GEYA RG ++D+ E R++FF D ID Sbjct: 117 MGQDISREDVEVQLSELGYERRQNAYEDGEYAVRGGIIDVMQ-DGENGVRIEFFGDCIDG 175 Query: 192 LRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKG 251 +R FD+ +QR+ E +E+I++ P F + I Sbjct: 176 IRKFDIKTQRSSEALESIDIEPVS-------------------FANGDEDSKI------- 209 Query: 252 TLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLET-----SAERFQADTLARFENR 306 + + + + D+ ++FQ L E++ Sbjct: 210 -------------------DIIDIVSPDVIFIEQPDVVAKSCTDEEQKFQKTILNLRESK 250 Query: 307 GVDPMRPLLPPQSLWLRVDELFSEL---------KNWPRVQLKTEHLPTKAANANLGFQK 357 + + + + + L KN + +P + + Sbjct: 251 QISEE--DILDHMALVDMKRMEQRLGIWQECDKPKNKAIYYMSAFDIPKGSFYYGKPAEV 308 Query: 358 LPDLAVQAQQKAPLDALRKFLETF---DGPVVFSVESEGRREALGELLARIKIAPQRIMR 414 + A + L+ F+E V + E + L E + I Sbjct: 309 VRKNAGVIRNVIDSKELKNFIERHEDEGFTVRVMAKDEYSKARLQEHFGILGITADI--- 365 Query: 415 LDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNL 474 GF+D + L+ E D+ G RV R ++++ +I + Sbjct: 366 --------FTFGRADEFRGFIDNDEHSCLLTEKDIFGVRVYRAKRNTNESI--GERLSGY 415 Query: 475 AELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAG 534 + G +VH G+GRY G+ T++ G + +Y+ L YA D KLYVPV + +++S+Y+G Sbjct: 416 QNIEEGDYLVHKTKGIGRYTGIKTMKLSGRSKDYICLVYAQDDKLYVPVENANVLSKYSG 475 Query: 535 GAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFC 594 ++ L KL + WS ++KA V ++A ++L+ A+R AK+G+AF D E+ + F Sbjct: 476 VSDAAPKLSKLFTNEWSVTKKKAWLSVLELAKKILEDEAKRKAKKGYAFLPDDEESKKFD 535 Query: 595 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAV 654 F + T DQ +AI+ V +DM MDRL+CGDVG+GKTEVA RA + V KQVA Sbjct: 536 ADFSYIPTDDQLRAIDEVKADMESHSPMDRLLCGDVGYGKTEVAARAMYKCVAAGKQVAF 595 Query: 655 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL 714 L PTT+L QHY RF I +SRFR+ +Q +I+ + GK+DILIGTH++L Sbjct: 596 LAPTTILVNQHYKTLVKRFEKTAAIIGELSRFRTDVQQKKIIEDAKAGKVDILIGTHRML 655 Query: 715 QSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLS 774 D+ F+DLGLLI+DEE RFGV KE+I+ +R NVD+LTL+ATPIPRT++MA+SG RDLS Sbjct: 656 SQDIGFQDLGLLIIDEEQRFGVVQKEKIRRLRQNVDVLTLSATPIPRTMHMAISGARDLS 715 Query: 775 IIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVP 834 +I PP R+ V TFV ++REAI RE+ R GQVY + + ++Q E++ LV Sbjct: 716 LITHPPLERMPVNTFVYIKSDEIMREAIEREVARKGQVYVVCRRISHMQDVKEKIERLVK 775 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 R+ +GQM E+ +E ++ F +VLVCT IIETGIDI ANTIII AD G+A Sbjct: 776 GIRVDTVNGQMNEKYIEDTLSSFIAGEIDVLVCTKIIETGIDIKNANTIIILDADMMGIA 835 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 +L+QLRGRVGR + ++A+LL K ++ + + RL AI G+ LA D++IRG Sbjct: 836 ELYQLRGRVGRGNRSSFAYLLHNDYKKLSDEQKSRLTAIKEFAKFGSSLTLAMKDMQIRG 895 Query: 955 AGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPD 1014 AG+++G++Q G M +IG+ +Y++L+E+AV AL GRE +ED + E+ L + + +P Sbjct: 896 AGDIIGKQQHGHMISIGYEMYIKLIEDAVKALNEGREIEIED--EVECEMSLDIEAYIPK 953 Query: 1015 DFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLG 1074 +I D ++L Y++IA +T E +++K + D FG P+ R L++++ ++ +A + G Sbjct: 954 SYIHDTQSKLMVYRKIAGIQTNEEFQDVKEYIEDMFGRSPENVRKLMELSFVKNKAARCG 1013 Query: 1075 IRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKF---------IQDL 1125 I K+ NE ++E+ + P L K ++ G ++ Sbjct: 1014 ISKVRSNEFDIIVEYISAKSLQPHDYSALAGKFKDVLKIGGYKHPILRFNKAQYLYKYNI 1073 Query: 1126 SERKTRIEWVRQFMR 1140 + ++ V + + Sbjct: 1074 DLNEEPLDVVERIIS 1088 >UniRef50_B1ZYU7 Transcription-repair coupling factor n=2 Tax=Opitutaceae RepID=B1ZYU7_OPITP Length = 1205 Score = 908 bits (2348), Expect = 0.0, Method: Composition-based stats. Identities = 391/1228 (31%), Positives = 583/1228 (47%), Gaps = 144/1228 (11%) Query: 19 LGELTGAACATLVAEIAERHAGPV-VLIAPDMQNALRLHDEISQFTD-------QMVMNL 70 L +T +A ++ E+ RH PV +++A D++ A RL ++ + F Q + Sbjct: 12 LTGITPSAQGAVLTELTLRHPAPVWIVVAADLKAAERLAEDAAFFHGAAQLPHAQTTLVF 71 Query: 71 ADWETLP-----YDSFSPHQDIISSRLSTLYQLPTMQ----------------------- 102 E++P ++F+ D R + L +L + Sbjct: 72 P--ESMPDAGDMREAFAASND----RFTVLSKLRATRSLGVATSSEVGGARRRGGATALP 125 Query: 103 RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEY 162 V++ L+Q V + +GQ S L +L Y G Y Sbjct: 126 PLVIVTTPGALLQPVPALEEFATREFTLSRGQTQSFQGLLERLQQLDYDSEAVCEAPGHY 185 Query: 163 ATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKA 222 A RG ++D++P+ + PYRLDFF DEI+++R FD +QR+ VE+I + + D + Sbjct: 186 AIRGGIIDVYPVTANTPYRLDFFGDEIEAIREFDPVTQRSGATVESITISASSRVRLDPS 245 Query: 223 AIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSE-----PLPPLFSYFP 277 + T V +P + +++S+ A P E P+ PL + Sbjct: 246 KTGIADYLSPRTHLVLIEPAALEEKLSQLAREADGATGVPPVGLESAAVSPVHPLNALLG 305 Query: 278 ANTLLVNTGDLETSAERFQA-DTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPR 336 + DL+ +A + D + +++ + R P+ + + L E R Sbjct: 306 KCAAIFGVSDLDEAAALLEDADDDSTWDSESLSHHRHY--PEDALVAQERLQVEEDARRR 363 Query: 337 VQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRRE 396 + L K + + L++ F + +EG R Sbjct: 364 FLQQVAAWRQSGFAVFLVVSKEGEEQRIREILQEDAKLKRIQPQF----LRGTLNEGFRI 419 Query: 397 ALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVAR 456 P E + VR L ++ E+++ G + R Sbjct: 420 TFR------GANPSPPEAKPEETPPTLTWPSLP------PKVRGLVVVTETEVFGRQRQR 467 Query: 457 RRQDSRRTINPDTLIR---NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTY 513 R + R + I + +EL G VVHL+HG+ Y G+T L+ E + L + Sbjct: 468 RPALNPRAMAQRAQIDQLLDFSELVEGDFVVHLQHGIAHYRGLTKLDTAQGVREVISLEF 527 Query: 514 ANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYA 573 + L+VP+ HLISRY G ++ L ++G W +AR A D+AAELL I A Sbjct: 528 DDHVTLHVPLQESHLISRYVGLSKTKPQLGRIGSGRWEKARLAAERATIDLAAELLRIQA 587 Query: 574 QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFG 633 R A+ GFAF D + F SFPF T DQ +AI +DM + MDRL+CGDVGFG Sbjct: 588 AREAQPGFAFPPDTTWQKEFEASFPFTETRDQLRAIEETKTDMERTQPMDRLICGDVGFG 647 Query: 634 KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT 693 KTEVA+RAAF AV +QVA+LVPTT+LAQQH + FR+R A +P+ IEM+SRFRS +Q Sbjct: 648 KTEVAIRAAFKAVQGGRQVAMLVPTTVLAQQHLNTFRERMAGYPIAIEMVSRFRSRADQK 707 Query: 694 QILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILT 753 +IL A G++DILIGTH++LQ DVKF+DLGL+I+DEE RFGV+HKE K MR+ VD+L+ Sbjct: 708 KILTATAAGQVDILIGTHRVLQHDVKFRDLGLVIIDEEQRFGVKHKEVFKQMRSTVDVLS 767 Query: 754 LTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVY 813 ++ATPIPRTL +A++G RDLS+I T P R ++T V+ YD +V +A+ E+ RGGQV+ Sbjct: 768 MSATPIPRTLYLALTGARDLSVIETAPTNRHPIQTVVKTYDEKLVIDAVRHELRRGGQVF 827 Query: 814 YLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 873 YL+N +E I A RL EL+P+ I +GHGQM +LE VM +F R+ +LVCTTIIE+ Sbjct: 828 YLHNRIETINLVAARLRELMPDVTIGVGHGQMEAADLEEVMTEFVAGRYQLLVCTTIIES 887 Query: 874 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAI 933 G+DIP NTI+IE AD FGL+QL+QLRGRVGR HQAYA+LL + A++RL A+ Sbjct: 888 GLDIPNCNTILIEGADRFGLSQLYQLRGRVGRFKHQAYAYLLLHRHTRLLDVARQRLTAM 947 Query: 934 ASLEDLGAGFALATHDLEIRGA---------GELLGE---------EQS-----GSMETI 970 LGAGF +A DLE+RGA G ++G QS G Sbjct: 948 RQHTQLGAGFRIAMRDLELRGAGNLLGAQQSGHIVGVGFELYCQLLRQSVARLKGEKTAA 1007 Query: 971 GF----SLYMELLENAVDAL-----------------------------KAGREP---SL 994 L ++ A + + +L Sbjct: 1008 AIRASVKLDFVIVGEAEGRAGPPLPAGKAKDAPATAPAASGIAALPSSARGRHQDGYTAL 1067 Query: 995 EDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLP 1054 D Q ++ + LP +IP+ R+ FY+++A A + +L+EI+ L DRFG + Sbjct: 1068 RDAEDAQVAELPKIQARLPAAYIPETRLRIDFYRKLAMADSPAKLKEIEAALQDRFGKIG 1127 Query: 1055 DPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLD 1114 R LL ++R A++ I +E K N +Q + RL Sbjct: 1128 PDVRALLLTTQIRILAEQTNILSVETEANRL------KCLRNSGRRDDWVQVGTRFPRLT 1181 Query: 1115 GPTRLKFIQDLSERKTRIEWVRQFMREL 1142 S R++ + F+ L Sbjct: 1182 A----------STPLLRLKEIIAFLHNL 1199 >UniRef50_A1KUB2 Transcription-repair coupling factor n=31 Tax=cellular organisms RepID=A1KUB2_NEIMF Length = 1375 Score = 871 bits (2251), Expect = 0.0, Method: Composition-based stats. Identities = 397/728 (54%), Positives = 524/728 (71%), Gaps = 10/728 (1%) Query: 427 IGAAEHGF-----VDTVRNLALICESDLLGE--RVARRRQDSRRTINPDTLIRNLAELHI 479 G+ V +A+I ESDL R + + D L+R+LAE++I Sbjct: 649 PSPVGEGWGEGKAVAAQSAIAVITESDLYQYVARSRVHNRRKKHAAVSDGLLRDLAEINI 708 Query: 480 GQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEEN 539 G PVVH EHG+GRY G+ T++ GG T E ++L YA +A+LYVPVS LHLISRY+G A EN Sbjct: 709 GDPVVHEEHGIGRYMGLITMDLGGETNEMMLLEYAGEAQLYVPVSQLHLISRYSGQAHEN 768 Query: 540 APLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPF 599 LHKLG AW++A++KAAEK RD AAELL++YAQRAA+ G F+ + YQ F D F + Sbjct: 769 VALHKLGSGAWNKAKRKAAEKARDTAAELLNLYAQRAAQSGHKFEINELDYQAFADGFGY 828 Query: 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTT 659 E T DQA AI AV+ D+ Q MDRLVCGDVGFGKTEVA+RAAF+AV KQVAVL PTT Sbjct: 829 EETEDQAAAIAAVIKDLTQAKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTT 888 Query: 660 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVK 719 LL +QH NF DRFA++PV++ +SRF ++K L +A+G +DI+IGTHKL+Q +++ Sbjct: 889 LLVEQHAQNFADRFADFPVKVASLSRFNNSKATKAALEGLADGTVDIVIGTHKLVQDNIR 948 Query: 720 FKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATP 779 FK LGL+I+DEEHRFGVR KE++K +RANVDILT+TATPIPRTL+MA+ G+RD S+I T Sbjct: 949 FKSLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMALEGLRDFSLITTA 1008 Query: 780 PARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 839 P+RRLAVKTFV+ + VREA+LRE+ RGGQV++L+N+V+ I+ ERL L+PEARI Sbjct: 1009 PSRRLAVKTFVKPFSEGSVREAVLRELKRGGQVFFLHNEVDTIENMRERLETLLPEARIG 1068 Query: 840 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899 + HGQ+RERELE+VM DF QRFNVL+C+TIIETGIDIP ANTIII RAD FGLAQLHQL Sbjct: 1069 VAHGQLRERELEQVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGLAQLHQL 1128 Query: 900 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959 RGRVGRSHHQAYA+LLTP + +T DA+KRL+AIA+ ++LGAGF LA DLEIRGAGE+L Sbjct: 1129 RGRVGRSHHQAYAYLLTP--EYITKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEIL 1186 Query: 960 GEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPD 1019 GE QSG M +GF+LY E+L+ AV LK GR+P L+ TE++L P+LLP+ + PD Sbjct: 1187 GEGQSGEMIQVGFTLYTEMLKQAVRDLKKGRQPDLDAPLGITTEIKLHSPALLPESYCPD 1246 Query: 1020 VNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLE 1079 ++ RL YKR+A +T ++ I EL+DRFGL P +TL++ LR A++LGI ++ Sbjct: 1247 IHERLVLYKRLAVCETVQQINAIHEELVDRFGLPEQPVKTLIESHHLRLMAKELGIDAID 1306 Query: 1080 GNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFM 1139 + + F + N+V+P +I L+Q + YRL G +L+F ++ + RI V+ + Sbjct: 1307 AAGEAVTVTFGKNNNVDPTEIILLIQNDKK-YRLAGADKLRFTAEMENIEVRINTVKNVL 1365 Query: 1140 RELEENAI 1147 + L+ + Sbjct: 1366 KTLQNRCL 1373 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 166/427 (38%), Positives = 228/427 (53%), Gaps = 14/427 (3%) Query: 11 VKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMN 69 K E+ L+ + +A H V++ D + ALRL F + Sbjct: 6 PKPREKSRWPNLSQGSLPLALARYLP-HKRLKVVLTQDAEQALRLQTAWRFFRPHDTAVF 64 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALV 129 L DWETLPY+ FSPHQD++S RLS L+Q+ + VL VPV T MQ++ P FL G Sbjct: 65 LPDWETLPYERFSPHQDLVSERLSALWQIKSGAADVLFVPVATAMQKLPPVPFLAGRTFW 124 Query: 130 MKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEI 189 +K GQ L L+T L AGY HV V+ GE+A RG ++DLFPMGSE+PYR+D FDDEI Sbjct: 125 LKTGQTLDIGRLKTDLVDAGYNHVSHVVAAGEFAVRGGIVDLFPMGSEMPYRIDLFDDEI 184 Query: 190 DSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVS 249 DS++ FD D+QRT+ V I LLPAHEFPTD A ++FRS++R+ + + +Y+ VS Sbjct: 185 DSIKTFDTDTQRTISPVSEIRLLPAHEFPTDSEAQKIFRSRFREEVDGNPNDAAVYKAVS 244 Query: 250 KGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVD 309 G AG+EY+ PLFF L LF Y + L V+ GD+ A RF +D +R+ D Sbjct: 245 NGHFGAGVEYYLPLFFENELETLFDYIGEDALFVSLGDVHAEANRFWSDVKSRYAMAQGD 304 Query: 310 PMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKA 369 P L PQ L+L D LKN+ +V LP + + LPDLAV Q Sbjct: 305 ETYPPLLPQHLYLSADVFAGRLKNYGQV------LPDVSGKEH----ALPDLAVNRQSDE 354 Query: 370 PLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEAS--DRGRYLMI 427 PL AL+ F F+G ++ ES GRRE + L + + + + + + Sbjct: 355 PLQALKDFQTAFEGRILLCAESLGRRETMLGFLQQNGLKAKSVSDWQGFLSAHEPLMITV 414 Query: 428 GAAEHGF 434 +GF Sbjct: 415 APLAYGF 421 >UniRef50_C1TQS1 Transcription-repair coupling factor Mfd n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TQS1_9BACT Length = 1014 Score = 870 bits (2249), Expect = 0.0, Method: Composition-based stats. Identities = 354/1119 (31%), Positives = 531/1119 (47%), Gaps = 120/1119 (10%) Query: 14 GEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-QMVMNLAD 72 G + GA A + + + ++ PD A + + + + L Sbjct: 7 GSRAFFFPFKGAVRAWI----CRERSSRLTVLLPDENQAEDFYSDAKILLSHEKIFRLP- 61 Query: 73 WETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKK 132 + + +R L + + + G+LI +M L L ++ Sbjct: 62 -DIPLEKGIVDDPASMVARGHVLRKW-SEEGGILISTPGGMMSPFMNSEGL----LSLRI 115 Query: 133 GQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 G+ RD L + LDS+GY D V + GEYA RG ++DLF S +P R+ FFDDEI+ + Sbjct: 116 GECAGRDRLISWLDSSGYSRSDLVWKPGEYAVRGGIVDLFDPSSRMPLRVVFFDDEIEEM 175 Query: 193 RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGT 252 R+F + Q + +VEA ++ Sbjct: 176 RLFSPEDQTSKCKVEAFSV----------------------------------------- 194 Query: 253 LPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMR 312 + L + + +A+ F++ + R Sbjct: 195 -----WELGDRVTPSAASTVSE--KGEVFLFDPIRSQINADSFRSIWNDLSAKWNIPEER 247 Query: 313 PLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLD 372 L + P + L + +L + + Sbjct: 248 --------------WDRFLIDTPLLYRFESGLGVRQRRLSL----REVPRFRGRISEMAV 289 Query: 373 ALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEH 432 + ++ E + S L + P+ Sbjct: 290 QISRWREQGYYVAIRSSSP------LPSDFEGMDWQPE------------------PLSS 325 Query: 433 GFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGR 492 GF+D + + + ++ G R RR + + L +VH +HG+ R Sbjct: 326 GFIDDEEKMVFLSDVEMYGIRPDRRTERQGTPKDWSILFEAR------DWLVHEDHGLCR 379 Query: 493 YAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSR 552 Y G+ ++E E+L+L + + +L +P + IS Y G +E+ +LG WS Sbjct: 380 YGGLESVEGSWGRQEFLVLEFQDKKRLLLPTGQISRISPYKGSVDESTVPDRLGSSRWST 439 Query: 553 ARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAV 612 + +KA ++ + A ELL++YA+R +G AF D E + F SFP E T DQ +AI+ V Sbjct: 440 SLRKAERQIEEEAKELLELYAKRKIAKGHAFSPDGEAMEEFERSFPHEETIDQLKAISDV 499 Query: 613 LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDR 672 DM P MDRLV GDVG+GKTEVA+RA F A + QV VLVPTT+LAQQHY FR R Sbjct: 500 KKDMESPRPMDRLVVGDVGYGKTEVALRAVFKAAMDGFQVLVLVPTTVLAQQHYMTFRSR 559 Query: 673 FANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH 732 +P+++E++SRF S + Q +IL +A+G +D++IGTH+LLQ+D+K + LGL+IVDEEH Sbjct: 560 MGPFPLKVELLSRFVSQRRQNEILTGLADGSVDVVIGTHRLLQNDLKIRRLGLIIVDEEH 619 Query: 733 RFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE 792 RFGV HKER + +R+ VD+LTL+ATPIPRT +MAM GMRD+SII TPP R A+ T Sbjct: 620 RFGVAHKERFRKLRSGVDVLTLSATPIPRTFSMAMKGMRDVSIIETPPGNRPAIITVTGA 679 Query: 793 YDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 852 +D +VR+A+ RE+ RGGQVY L+N V I++ A + P+ R+A HG+MRE ELE Sbjct: 680 WDDGLVRKALAREMARGGQVYMLHNRVGTIEERAGWVKSRFPDVRVAFAHGRMRENELEE 739 Query: 853 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 M F+ ++LVCTTI+E+G+D+ ANT++++ + GLAQ+HQLRGRVGR AYA Sbjct: 740 TMMAFYDGEIDILVCTTIVESGLDVGRANTLVVDDSRLLGLAQMHQLRGRVGRRDDTAYA 799 Query: 913 WLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF 972 + L P + +RL+AI L GAG+ LA DL IRG G+LLG Q G E +G Sbjct: 800 FFLYPSDCVLPHSTAERLDAIGRLSFQGAGYELAKEDLHIRGGGDLLGMSQHGHRERVGL 859 Query: 973 SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIAS 1032 LY L + VD L+ G +TE+E+R+P +P+ +I RL+ Y+RI Sbjct: 860 QLYYRKLRDEVDRLRGGTTG--------ETEMEIRIPLSIPESYISVSALRLAIYRRIDE 911 Query: 1033 AKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEK 1092 + E ++ EL DRFG +P LLD+A LR +K GI + +E+ I EK Sbjct: 912 IEDLEGRENLRNELQDRFGPIPSEVDRLLDLALLRTICRKRGIIRCMLSEERCEITLGEK 971 Query: 1093 NHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTR 1131 V L L ++ + R I L R Sbjct: 972 TDV---RLSALWTEKKDEM-VGPGGRSGIISLLDILTDR 1006 >UniRef50_C7CIQ8 DEAD/DEAH box helicase domain protein n=9 Tax=Alphaproteobacteria RepID=C7CIQ8_METED Length = 1111 Score = 861 bits (2224), Expect = 0.0, Method: Composition-based stats. Identities = 334/1132 (29%), Positives = 522/1132 (46%), Gaps = 70/1132 (6%) Query: 28 ATLVAEI-AERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQ 85 A VA + + A P++ +A D + + + + V +W+ LP+D SP + Sbjct: 29 ALAVALLGFAQAARPLIHVARDGRRLDEIAAVLLALAPERTVAVYPEWDCLPFDRASPSR 88 Query: 86 DIISSRLSTLYQLPTMQ--RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRT 143 ++ +R L L + +++ L+QRV P + ++ G+ L + L Sbjct: 89 GVMGARTGVLRWLTDDRAQPDIVLTTAPALLQRVPPPETWESAHIELRVGEPLDAEQLTA 148 Query: 144 QLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTL 203 QL GY D+V E GE A RG +D+FP + LP R++ I ++R +D SQR+ Sbjct: 149 QLARLGYILDDRVDEPGEVAVRGRTIDVFPAAAPLPCRVEHDGARITAIRSYDPVSQRSR 208 Query: 204 EEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPL 263 E E + + PA E D + G E+ Sbjct: 209 VETERLVIDPATEIILDPDSGLALE------------------------PFTGQEHRLAR 244 Query: 264 FFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQ----- 318 F+ L + Y P L+V G E +A F+ R + P + Sbjct: 245 FYP-ALVTMLDYVPEARLVVEAGVEERAAAFFEQIAEGREAEGAMSPSGSRRDDRSQQTP 303 Query: 319 --SLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRK 376 L+L E L + A P + + +A + Sbjct: 304 APDLYLAPKEWAKLLDARSLAAATSAEAERIAG---------PVFVRERRPEAAFAKALR 354 Query: 377 FLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE---ASDRGRYLMIGAAEHG 433 VV + R + A + + I E A + E G Sbjct: 355 AALKVGERVVLAGPKAPLRRLVRAAAAADERTVRLIDGWAEVEAAEPGAMLAIEMPVEAG 414 Query: 434 FVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRY 493 F +I +DL G + L EL +G + +HG+ + Sbjct: 415 FRVPQAGATVIAAADLFG------PLAAGAGRRAAVLPIGEVELRVGDVSIDRDHGLCLF 468 Query: 494 AGMTTLEAGG-ITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSR 552 G+ + G + L L +A+DA L VPVS I RY G E L +L G W+R Sbjct: 469 EGLEAIRGGEEDEEDALRLRFADDAILMVPVSQADRIWRY-GSEAEAVTLDRLDGGTWAR 527 Query: 553 ARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAV 612 R +A + A +L +R + + F F + T DQA A+ Sbjct: 528 RRLEAEATLAKAARAMLKAAQERREAHAPQIVPPEREMERFAAGFGYPLTGDQAGAVEET 587 Query: 613 LSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDR 672 L+D+ + + MDRLVCGDVGFGKTEVA+RAA A+ +Q+AV+ PTT+L +QH + FR R Sbjct: 588 LADLAREMPMDRLVCGDVGFGKTEVALRAAAAAIFAGRQIAVMAPTTVLVRQHVETFRRR 647 Query: 673 FANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH 732 FA + + + +SR S E ++ +A+G + +++GT L V F DLGL I+DEE Sbjct: 648 FARFCIEVAHLSRLVSPAEAKRVKQGLADGSVRLVVGTQALAGRGVSFHDLGLAIIDEEQ 707 Query: 733 RFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE 792 RFG + K ++ + ILTL+ATPIPRTL AM G++ LS+IATPPA R ++T + Sbjct: 708 RFGAKTKASLRKAAGDAHILTLSATPIPRTLQAAMVGLQSLSVIATPPAVRQPIRTVIAP 767 Query: 793 YDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELER 852 ++ + A+ RE RGGQ + + +E+I A+RL LVP + HG+M+ E++ Sbjct: 768 FEESTLAAALRREHRRGGQSFVVCPRIEDIAPMAKRLHALVPGLDVVTAHGEMKPAEMDD 827 Query: 853 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 M F +VL+ T+IIE+G+D+P ANT+++ A+ FGLAQLHQLRGRVGR + Sbjct: 828 AMVRFADGNGDVLLATSIIESGLDVPRANTMLVWDAERFGLAQLHQLRGRVGRGQRRGVV 887 Query: 913 WLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF 972 +L K ++ +KRL + +L+ LGAGFA++ DL++RGAG+L+G++QSG ++ +G Sbjct: 888 YLFGHPDKPLSHSTEKRLRTLEALDRLGAGFAISARDLDLRGAGDLVGDDQSGHVKLVGL 947 Query: 973 SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIAS 1032 LY LL+ A+ A K E EV + + +P D+IP+ RLS Y R+ Sbjct: 948 GLYQHLLQLALRAAKG------EAAEDWSPEVRIGLNGRVPADYIPEPEIRLSLYTRLLR 1001 Query: 1033 AKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEK 1092 + E E++ ++ E+ DRFG LP+ L +ARLR LGI +L G +G +F Sbjct: 1002 LRAEAEIDALRDEIEDRFGPLPESVDALFTLARLRIGCLALGIVRLSGGPQGIAADFHPD 1061 Query: 1093 NHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 H + + + + + G + R F+R L++ Sbjct: 1062 RHAPVIPVSEEITVRDRRIVIRGG--------CDDAVERGARAAVFLRRLQD 1105 >UniRef50_P57381 Transcription-repair-coupling factor n=4 Tax=Buchnera aphidicola RepID=MFD_BUCAI Length = 812 Score = 851 bits (2199), Expect = 0.0, Method: Composition-based stats. Identities = 415/812 (51%), Positives = 582/812 (71%), Gaps = 1/812 (0%) Query: 337 VQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRRE 396 +++ + N +QKL DL + + L +L +F G ++FS+ E + Sbjct: 1 MKITKNKILKNKKIINFKYQKLLDLFYNVNNQKKNNQLLSYLYSFSGKIIFSLTEEKSLK 60 Query: 397 ALGELLARIKIAPQRIMRLDEASDR-GRYLMIGAAEHGFVDTVRNLALICESDLLGERVA 455 + L R KI PQ I R+ + + MI ++GF+D N+ +C DLL + Sbjct: 61 KILRFLMRHKIHPQYIKRIIDIKKEIDYFYMIEEIKNGFIDKKNNILFLCTKDLLPILID 120 Query: 456 RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYAN 515 + + + + NL++L + PV+H+EHG+GRY G+TT+E I EYL+++YA Sbjct: 121 DKYIGNIKKNTNNINKFNLSQLILNHPVMHIEHGIGRYKGLTTIETASIQSEYLVISYAE 180 Query: 516 DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR 575 KLYVPVS+LHL+S Y G + ENAPLHKLGGD W++ + K ++ V D AA+LL IYA+R Sbjct: 181 GDKLYVPVSNLHLVSPYTGTSIENAPLHKLGGDDWNKEKHKISKTVYDHAAQLLHIYAKR 240 Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 +K GFAFK + E+Y LFC+ F+TT DQ + + VL DM +P+ MDRL+CGDVGFGKT Sbjct: 241 ESKTGFAFKKNIEKYDLFCNDCSFKTTSDQNEVMKFVLKDMSKPIPMDRLICGDVGFGKT 300 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 E+AMRA+FLAV N KQVA+LVPTTLLAQQHY NF+ RF+NWPV I ++SRF++ KEQ I Sbjct: 301 EIAMRASFLAVSNKKQVAILVPTTLLAQQHYKNFKIRFSNWPVNINILSRFQTQKEQDLI 360 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 G+I+I+IGTHKLL ++++ LGLLI+DEEHRFGV HKE IK + +N+DILTLT Sbjct: 361 FKHTKNGRINIIIGTHKLLFKNIEWCSLGLLIIDEEHRFGVSHKEIIKKIYSNIDILTLT 420 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYL 815 ATPIPRTLNMAM+G++DLSIIA PPA+RLA+KTF++EY +++R+ ILREI RGGQVYY+ Sbjct: 421 ATPIPRTLNMAMTGIKDLSIIAKPPAQRLAIKTFIQEYSPILIRKTILREISRGGQVYYI 480 Query: 816 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGI 875 YN V+NI AERL+ L+PEA I IGHGQM+ +L++VMN+F++ +FNVL+CTTIIE+G+ Sbjct: 481 YNKVQNIMNIAERLSILIPEASIKIGHGQMKNIDLKKVMNEFYNNKFNVLICTTIIESGV 540 Query: 876 DIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIAS 935 DI ANTIIIE +DHFGL+QLHQLRGR+GRS++QAYA LL + +T+DA+KRLEAI+S Sbjct: 541 DIARANTIIIENSDHFGLSQLHQLRGRIGRSNNQAYALLLVNNFNKITSDAKKRLEAISS 600 Query: 936 LEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLE 995 +++ G GF+L+ DLEIRG GE+LG+EQSG ++ IGFSLYM+LL+NA+D LK G+ S+E Sbjct: 601 VDNFGGGFSLSNQDLEIRGVGEILGKEQSGHIKNIGFSLYMDLLKNAIDLLKNGKIFSVE 660 Query: 996 DLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPD 1055 + E++L + SLLP +I D+NTRL FYK++A+A E ++EEIK ELID+FG LPD Sbjct: 661 KSLKKPLEIDLHVSSLLPSSYILDINTRLFFYKKLANAIHEKQIEEIKYELIDQFGKLPD 720 Query: 1056 PARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDG 1115 ++ L+ IA++R A K+GI+ ++ N G+IEF + +N +L+ + QK+P+ ++++ Sbjct: 721 FSKNLILIAKIRLIADKIGIKYIKSNNNIGIIEFNDYGSINTEYLLKMFQKEPKIWKMET 780 Query: 1116 PTRLKFIQDLSERKTRIEWVRQFMRELEENAI 1147 TR+KFI L R++W+ +R L + I Sbjct: 781 STRIKFILHLKNDYLRLKWIINLLRNLFKKNI 812 >UniRef50_B9KVH0 DEAD/DEAH box helicase domain protein n=2 Tax=Rhodobacter sphaeroides RepID=B9KVH0_RHOSK Length = 1059 Score = 845 bits (2183), Expect = 0.0, Method: Composition-based stats. Identities = 359/1101 (32%), Positives = 529/1101 (48%), Gaps = 66/1101 (5%) Query: 43 VLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM 101 + I D A + + + W+ LPYD SP D + R++ L + Sbjct: 23 LHITSDDARAEEIVRFLREIAPTLRPGLFPCWDCLPYDGASPTPDAMGRRMALLDAVRAR 82 Query: 102 QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGE 161 ++IV + L+QRV P + ++ G+ L ALR+ AGY D++ E GE Sbjct: 83 DVRLVIVGPSGLLQRVPPVEAMR--RFAVRAGETLDLGALRSFAARAGYVEDDRIDEPGE 140 Query: 162 YATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDK 221 A R ++++F G++ P R+ D + +R +D S R+LE+V I+LLP E P Sbjct: 141 IAFRAEVVEVFAAGADRPVRIGLQGDLVTGIRRYDPVSLRSLEDVPGIDLLPVTELPES- 199 Query: 222 AAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL 281 ++G P G E+ P + L L + + Sbjct: 200 -------------------------AFAEGPPPRGAEHLLPRAWP-ALAALPDHLGQGGI 233 Query: 282 LVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKT 341 V G L A + + LL P +L+L ++L L + L Sbjct: 234 SVTPGALAALRRARAQIEEAHRDRESLGEGEALL-PDALYLGEEDLAGILAQAETLDLS- 291 Query: 342 EHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGEL 401 G++ +P A + +A L + VV + AL Sbjct: 292 ------------GWEPVPAFAEDRRPRAALARFVRGQIGEGRRVVLLAATPRDLRALRRA 339 Query: 402 LARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDS 461 Q ++ GFVD A++ D+LG R A + Sbjct: 340 -TGAADPAQDWQDARATPQDVPAAILSTLARGFVDLPGRTAVVTARDVLGSRAAEDAAVA 398 Query: 462 RRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYV 521 + T L G VVH + G+GR G+ L G E + L YA+D L V Sbjct: 399 AVSAWQGTP----DALAEGDLVVHEDRGLGRLQGLEPLP-GADGREAIRLGYASDQHLLV 453 Query: 522 PVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGF 581 PV I RY G + L +L G AW+ R+K E + + A L+ +RAAK Sbjct: 454 PVEEAGRIWRY--GTGADVSLDRLNGSAWTNRRKKLDEGIAEAARALVSAAKERAAKSAR 511 Query: 582 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRA 641 +F+ + Y+ F FPF + DQ +AI V D+ M+RLV GDVGFGKTE+A+RA Sbjct: 512 SFEPPPDIYERFAGRFPFTLSADQRRAIAEVRDDLVAGRPMNRLVLGDVGFGKTEIALRA 571 Query: 642 AFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE 701 A + QVA++ P+T+LA+QH + FR RF + V + +SR +KE + + Sbjct: 572 AAAVALSGAQVALVAPSTVLARQHAETFRRRFEGFGVTVAHLSRLVPSKEAKAARDGLRD 631 Query: 702 GKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPR 761 G I I++GTH LL V F DLGLLIVDEE RFG HK R++A+ A++ +LT+TATPIPR Sbjct: 632 GSIRIVVGTHALLGKGVAFADLGLLIVDEEQRFGAAHKARLRALGADLHVLTMTATPIPR 691 Query: 762 TLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVEN 821 TL A+ G++DLS IATPPARR AV+T E D+ V+R+A+LRE RGGQ + + + Sbjct: 692 TLQTALVGLQDLSEIATPPARRRAVRTLTAEDDAAVLRQALLRERRRGGQSFVIVPRIAE 751 Query: 822 IQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 I RL +L+PEA++ + HG + EL+R M +F R ++L+ T+I+ETG+D+P AN Sbjct: 752 IDATEARLRDLLPEAQLRVAHGDLAPEELDRAMVEFAAGRGDILLATSIVETGLDVPRAN 811 Query: 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGA 941 T+I+ + FGLAQLHQLRGRVGR QAY +L+ + A +RL + + + LGA Sbjct: 812 TMIVMQPQLFGLAQLHQLRGRVGRGARQAYCYLMHGPGDDLDEAALRRLGTLQAFDRLGA 871 Query: 942 GFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQ 1001 G A+A DL+ RGAGEL GE QSG + IG LY LL AV A + E T+Q Sbjct: 872 GAAIAAEDLDQRGAGELFGERQSGHVRLIGLPLYQHLLAQAVRAARG------EPPTAQH 925 Query: 1002 TEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLL 1061 + + LP D+IP+ RL Y+R+A A E+ + E+ DRFG P A LL Sbjct: 926 VSLAMEGDGALPADYIPEAGLRLGLYRRLARAADPREVALLADEIEDRFGPPPAAAAGLL 985 Query: 1062 DIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKF 1121 A +R A+ LGI ++ G ++ A V + P+ L+G + Sbjct: 986 VAAEIRALARSLGIERVSAGPSGVALDLAPDACVE-----RFAEDLPEGVTLEGR---RL 1037 Query: 1122 IQDLSERKTRIEWVRQFMREL 1142 ++ + +R+L Sbjct: 1038 LRQEETDEDAARRALDLLRDL 1058 >UniRef50_C6B9D3 DEAD/DEAH box helicase domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6B9D3_RHILS Length = 1072 Score = 844 bits (2180), Expect = 0.0, Method: Composition-based stats. Identities = 330/1122 (29%), Positives = 527/1122 (46%), Gaps = 74/1122 (6%) Query: 28 ATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLPYDSFSPHQD 86 LVA + R + +A A ++ D +S ++ L W+ LPYD P Q Sbjct: 4 TRLVASL-RRSERSLCYVALSEGAATKIADAVSALFPDIEIIVLPPWDCLPYDRVPPSQR 62 Query: 87 IISSRLSTL--YQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQ 144 + R+ L + +P+ + + ++ +QR+ P + + L + G+ RDA Sbjct: 63 CMGLRMDALRIWSMPSDAPRLFLTSLDATLQRIPPATVIANSRLELVVGKAFDRDAFSDF 122 Query: 145 LDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFF-DDEIDSLRVFDVDSQRTL 203 + GY + GE A R ++D++P G+ P R+ DD + LR FD SQRT Sbjct: 123 IQRTGYVEEGVADDPGELAVREGVIDIYPAGAPGPLRIVLSKDDSVLELRGFDRVSQRTE 182 Query: 204 EEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPL 263 + + PA E + E F + L Sbjct: 183 SYFDKVIFGPASEAILTEGITEEFVPTSDTV----------------------MRLLLRL 220 Query: 264 FFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLR 323 + + +P +F + T+++ G + ER+ ++R +SL+L Sbjct: 221 Y--QDMPTVFDFLGDATVVLAPGAADQV-ERYLEIVDDARQSRKDFGEVEAPSSRSLYLD 277 Query: 324 VDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLE---T 380 E + + + L ++ DL +A P AL +++ Sbjct: 278 RAEWERQ--------------ASSVSARELDLEEGGDLPTEASDTYPRTALINWMQDCLR 323 Query: 381 FDGPVVFSVESEGRREALGELLARIKIAPQRIMRLD---EASDRGRYLMIGAAEHGFVDT 437 VV S + G L APQ I + +A + + GF+D Sbjct: 324 HGLKVVISGKGNGSEALCRRLGQATGTAPQSIDTWEAVLKAEPGTVLKLACELDQGFIDV 383 Query: 438 VRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMT 497 +A++ +D + T + + + EL IG VVH +HGVG + Sbjct: 384 TERIAVVAAADGIS------------TASNCSTLLVEPELRIGDVVVHEDHGVGVLRDLE 431 Query: 498 TLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKA 557 ++ + + L Y + + VP+ + RY G E L +L AW R+K Sbjct: 432 SIAVENVCRDAARLEYRDGDSVLVPMEEFGKLWRY-GSEPEAVTLDRLHTAAWQNKREKI 490 Query: 558 AEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMC 617 A ++ A L+ + R A AF R + F FPF T DQA+AI +VLSD+ Sbjct: 491 AADIQSTARHLIKLAKHRQASRAEAFVPPRAGFSAFTRRFPFTETHDQAEAIRSVLSDLA 550 Query: 618 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 AM+RLVCGDVGFGKTE+A+RAA QV V+ PTT+L +QH+ F RFA Sbjct: 551 TGRAMNRLVCGDVGFGKTEIALRAAAAVALAGGQVVVIAPTTVLTRQHFATFTRRFAGTG 610 Query: 678 VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVR 737 V + M+SR +E ++ A +A G+I +++ T +L DV+F L L+IVDEEHRFG++ Sbjct: 611 VSVGMLSRLLKPREAKKVKAALAVGEIGVIVTTQAILAKDVRFAHLALVIVDEEHRFGLK 670 Query: 738 HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV 797 K + + ++ L ++ATPIPRTL AM G+ ++S++ TPP RR V+T + +D Sbjct: 671 EKRAMNTLVPSLHTLAMSATPIPRTLQSAMVGVHEVSLLTTPPFRRRPVRTSLSVFDHAS 730 Query: 798 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDF 857 +R ++RE RGGQ + + +E+I L ++VPE + + HG M ++ + F Sbjct: 731 MRTGLMREKRRGGQSFVVVPRIEDIDVVKTILRKIVPELSVKVAHGDMPAAAIDEAIVGF 790 Query: 858 HHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP 917 +VL+ T IIE G+D+P ANT+ + +AD FGLAQLHQLRGRVGR Q A LLT Sbjct: 791 AEGDGDVLLATNIIENGLDVPRANTMFVWQADRFGLAQLHQLRGRVGRGGAQGIATLLTE 850 Query: 918 HPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYME 977 + + ++ + + RL + + LGAG +++ DL++RG G++ GE+Q+G M+ IG LY + Sbjct: 851 NAE-LSDETRLRLSTLVENDRLGAGLSISLRDLDLRGGGDIAGEDQAGHMKVIGIGLYQK 909 Query: 978 LLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTEN 1037 LL AV L+ + + V L + +P D++ D RL+ Y ++ A T + Sbjct: 910 LLAGAVARLRKQPAGTP-----LRAIVNLGVAGTIPSDYVSDPAVRLNLYAKLLRASTLS 964 Query: 1038 ELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNP 1097 E+++++ E DRFG LP LL RL+ A +LGI KLE K + K P Sbjct: 965 EMDDLEEEFEDRFGELPQDVLLLLRTTRLQLAAGRLGIAKLEAGPKALAMTLTPKT---P 1021 Query: 1098 AWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFM 1139 A +I L K+ R RL F + ++ + + + Sbjct: 1022 AKVIAALTKKAGAVRRV--DRLIFEASNMTGEEQLLFFERVV 1061 >UniRef50_B3DY76 Transcription-repair coupling factor mfd (Superfamily II helicase) n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DY76_METI4 Length = 1060 Score = 841 bits (2173), Expect = 0.0, Method: Composition-based stats. Identities = 304/775 (39%), Positives = 449/775 (57%), Gaps = 27/775 (3%) Query: 347 KAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIK 406 ++ L K + + + L+AL +++E VV V +EG L E+L Sbjct: 288 FESHLFLDTPKGDWFYQERRWQLFLEALGRWIEKQ-WEVVIFVNNEGEESRLKEILNNQG 346 Query: 407 IAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLL----GERVARRRQDSR 462 I+ ++I+ GF L+++ ++++ +++ R Q Sbjct: 347 ISTEKIL-----------FSKSPLLRGFCWPEAKLSILTDAEIFGRYQNQKILLRSQQKN 395 Query: 463 RTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVP 522 + G VVHL+ G+ ++ G+ T+E G E + L + AKLYVP Sbjct: 396 DYFRAPLGSDIFEQWKEGDIVVHLQKGICKFKGIKTIE--GTNTEMVELEFDQQAKLYVP 453 Query: 523 VSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFA 582 + HLI+RY GG ++ L LGG+ W +A++ A + V D+A +LL I A+R EGFA Sbjct: 454 IDQAHLIARYIGGTKKLPKLDSLGGNRWIKAKRAAQKAVTDLAEKLLKINAEREVLEGFA 513 Query: 583 FKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 642 F D + + F ++F +E TPDQ +AI DM MDRL+CGDVGFGKTEVA+RA Sbjct: 514 FPQDDQWQKEFEEAFIYEETPDQLKAIEETKKDMESKRPMDRLICGDVGFGKTEVAIRAI 573 Query: 643 FLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG 702 F AV KQ +L PTT+LA+QH++ R+RFA++P+ ++ RF E+ +ILA + EG Sbjct: 574 FKAVMGGKQAVLLTPTTVLAKQHFNTLRERFADYPIHTALLCRFVKNSEEKEILAGLKEG 633 Query: 703 KIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRT 762 +D+++GTH+LL +DV+FKDLGL+++DEE RFGV KE+ K +D+L L+ATPIPRT Sbjct: 634 TVDVVVGTHRLLSADVEFKDLGLIVIDEEQRFGVLQKEKWKEKFRFIDVLLLSATPIPRT 693 Query: 763 LNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENI 822 L +AM+G RD+S+I TPP R ++T V YD V+R+AI RE+ RGGQVY+L+N + I Sbjct: 694 LYLAMAGARDMSLIETPPPNRFPIETIVGPYDERVIRQAIERELNRGGQVYFLHNRIRTI 753 Query: 823 QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 882 +K A RL L+P +I IGHG+M++ ELE VM F + +VL+ T+IIE G+DIP ANT Sbjct: 754 EKVASRLKSLLPSIKIDIGHGRMKKHELEEVMERFVEGKIDVLLATSIIENGLDIPNANT 813 Query: 883 IIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAG 942 III+RAD FGLA L+QLRGRVGRS+ +AYA+LL P + +DA+KR++A+ LG G Sbjct: 814 IIIDRADLFGLADLYQLRGRVGRSNQKAYAYLLLPRDLFIQSDAKKRIKAMQEHSQLGTG 873 Query: 943 FALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQT 1002 F +A DLEIRGAG LLG QSG + +IGF LY +LL+ A+ ++ +E Sbjct: 874 FQIALRDLEIRGAGNLLGTSQSGHIASIGFELYCKLLKKAIQKIQG-KETEPLIDCRLSL 932 Query: 1003 EVELRMP-------SLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPD 1055 + L P + +P ++ RL Y+++A A ELEEIK DR+G P+ Sbjct: 933 DFLLPEPGGGRHALAYIPFSYMERRQERLHAYRQLAEASQPEELEEIKKSWKDRYGPWPE 992 Query: 1056 PARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKN-HVNPAWLIGLLQKQPQ 1109 P L + +R A + GI ++E + L++ +P+ Sbjct: 993 PVEHLFSLVEIRIIAARKGIERVETERDKLKLIKNNDYLFTKQGKFPRLIEAEPK 1047 Score = 172 bits (435), Expect = 9e-41, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 93/210 (44%), Gaps = 2/210 (0%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 P + + L + + +A + GP+++IA +++ + + Sbjct: 39 PLLKNLHHRIIEQRNCAIDSLPLSGQSFFLASFLRVYRGPLLVIAENIKKTNEIALGLEC 98 Query: 62 FTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHS 121 + + L + E +P +S P ++ RLST Y L G++I + + + Sbjct: 99 W-GSPYLILPEVEPVPAESL-PDPTFLAERLSTAYSLLDFPSGIIITTEQAMEEALPSPE 156 Query: 122 FLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYR 181 L L + R A+ +L +AGY VD V G++A RGA++D F S P R Sbjct: 157 LLKEKRLPLAVENSFDRKAVIEKLVTAGYERVDSVDCRGQFAVRGAIIDTFCWDSCYPLR 216 Query: 182 LDFFDDEIDSLRVFDVDSQRTLEEVEAINL 211 +++ + + SLR FD +QR+ + + +L Sbjct: 217 MEWEGNRLISLRQFDPITQRSFKPLAQAHL 246 >UniRef50_Q1YKV9 Putative transcription-repair coupling factor n=1 Tax=Aurantimonas manganoxydans SI85-9A1 RepID=Q1YKV9_MOBAS Length = 1128 Score = 839 bits (2168), Expect = 0.0, Method: Composition-based stats. Identities = 343/1147 (29%), Positives = 523/1147 (45%), Gaps = 65/1147 (5%) Query: 12 KAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQF-TDQMVMNL 70 ++G +R+ A ++A P++ IA + + S V L Sbjct: 20 RSGNKRVFPLHPIGVVAAMIARRVSDDRRPLIYIAETGRRRHDIFALASILAGPGTVCEL 79 Query: 71 ADWETLPYDSFSPHQDIISSRLSTLYQLP--TMQRGVLIVPVNTLMQRVCPHSFLHGHAL 128 + P D +R++ L L + VLI L+++V P S G Sbjct: 80 DAPDGFPGDGLPVTVATAGNRMAMLRWLLDEEKRPSVLITTPAALIRKVPPKSVWEGLHS 139 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 ++ G+ L + AL+ +L GY D+V E GE A RG +L++FP + P R++ D Sbjct: 140 EIRVGETLDQTALQAKLQHLGYWLDDRVDEPGEAAFRGKVLEIFPAAAPRPCRIEHEDGV 199 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQV 248 + ++R +D SQR++ E + + + PA E E + + Sbjct: 200 VTAIRSYDPVSQRSVSETDCLIVDPASEIVGADDG-------------ATGRQEIDGETL 246 Query: 249 SKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGV 308 G + E + + E +F Y +++ TG + E F D L R + Sbjct: 247 QTGAPDS--ERFLCRQY-ERPETVFDYLQDADMVLETGAEIRADEVF--DALQRID--AD 299 Query: 309 DPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQK 368 DP R + L + + + + +P A + Q Sbjct: 300 DPHRHAVLAD--HLDRETWDTLVAERVTALVDDVEADY----------SVPVFATERQPY 347 Query: 369 APLDALRKFLETFDGPVVFSVES----EGRREALGELLARIKIAPQRIMRLDEASDRGRY 424 L + + L +V + G L + + +A+ Sbjct: 348 KALASFVEPLRDEGYRIVLAGPDGRVMRSAARKAGTALDGVFEPAANWDAICDAAPSSLL 407 Query: 425 LMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 L GFV +A+I +L G++ A P + G VV Sbjct: 408 LFDAPITQGFVAAESGVAVISLRNLEGQKAAAAVAGPSDGFAPQ-----VDTFMTGDRVV 462 Query: 485 HLEHGVGRYAGMTTLEAGGI----TGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 H+EHGV G+ ++ G GE L L Y ND L VP+S + + R GGA + Sbjct: 463 HIEHGVAVLDGLVPIDPNGNGGDPEGEALSLRYRNDETLLVPMSDIGAVWR-CGGASTDV 521 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 L L G W + R + + A +++ ++A + DR ++ FC F +E Sbjct: 522 TLDDLKGRTWQKRRDEIFGAISVTADRMVERLTEKAEAKAPKIVPDRVSFERFCARFAYE 581 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 T DQ A VL D+ M+RLVCGDVG+GKTEVA+RAA AV + +QVAV+ PTT+ Sbjct: 582 LTADQNNACLDVLDDLASGRPMERLVCGDVGYGKTEVALRAAAAAVFSGRQVAVIAPTTV 641 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LAQQH+ F RF V I +SR E A + +G I++GTH +L DV F Sbjct: 642 LAQQHFREFSARFGAQGVEIVRLSRLVGKDEADAAKAAMQDGTAKIVVGTHAILSGDVAF 701 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 DL L+I+DEE RFG K ++ + V ILT+TATPIPRTL G+ DLSIIATPP Sbjct: 702 DDLALVIIDEEQRFGSEQKAAMRTLADGVHILTMTATPIPRTLQSGFVGLSDLSIIATPP 761 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 RR VKT V +D VR+A+ E RGGQ + + +E+++ A +L ELVPE Sbjct: 762 NRRSPVKTRVGPFDDAAVRDALTAERARGGQSFVVCPRIEDLEPMAAKLQELVPEQTTVT 821 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 HG+M+ E+E M F H +VL+ T I+E+G+D+ ANT+++ AD FGLA+LHQLR Sbjct: 822 LHGKMKPDEVEDAMLAFAHGEHDVLLATAIVESGLDVANANTMVVCHADRFGLAELHQLR 881 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGR + + L T + + A+ RLEA+ LGAGF +A DL++RG GELLG Sbjct: 882 GRVGRGARRGHVLLTTEADRELGEHARSRLEALEEFSTLGAGFDIAARDLDLRGTGELLG 941 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 +EQ+G ++TIG LY ++LE AV + EP + + L +P+ +P D++P+ Sbjct: 942 DEQAGHVQTIGIGLYRKILERAVALAQGQPEPD-----DVRPVIALGLPATIPADYVPEP 996 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 + R+ + L+ ++VE+ DRFG +P T +A LR + + G+ KL+ Sbjct: 997 DMRIELALLLERVSDAATLDALRVEIEDRFGPMPATLLTHFRLAELRLRCRAAGVAKLDH 1056 Query: 1081 NEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDG----PTRLKFIQDLSERKTRIEWVR 1136 K + F + LQ RLD RL F + + Sbjct: 1057 GPKATALGFTP-------AMSAALQDAGIEDRLDDAKWSKNRLIFPAPEDDEADPLAHAN 1109 Query: 1137 QFMRELE 1143 + + L Sbjct: 1110 ELLDRLA 1116 >UniRef50_C4DT42 Transcription-repair coupling factor Mfd n=29 Tax=Bacteria RepID=C4DT42_9ACTO Length = 1356 Score = 830 bits (2145), Expect = 0.0, Method: Composition-based stats. Identities = 317/738 (42%), Positives = 451/738 (61%), Gaps = 19/738 (2%) Query: 418 ASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAEL 477 + +G HG VD LA++ D+ G + A R R + L EL Sbjct: 618 LRPGHVTVTVGGLSHGIVDEAAKLAILTGDDISGGKGATTRDMRRMPSRRKGGVNPL-EL 676 Query: 478 HIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYA------NDAKLYVPVSSLHLISR 531 G VVH +HGVGRY + G EYL++ YA +L+VP +L ++R Sbjct: 677 SNGDYVVHEQHGVGRYIELVRRTVNGAEREYLVIEYAASKRGQPADRLFVPTDALDQLTR 736 Query: 532 YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 591 Y G E +HKLGG W +A+ +A + VR++AAEL+ +YA R A EG AF D + Sbjct: 737 YVG--GEMPSVHKLGGSDWQKAKSRAKKAVREIAAELIKLYAARQATEGHAFGPDTPWQR 794 Query: 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ 651 D+FP++ TPDQA AI+ V SDM MDRL+CGDVG+GKTE+A+RAAF AV + KQ Sbjct: 795 ELEDAFPYQETPDQAGAIDEVKSDMMGRTPMDRLICGDVGYGKTEIAVRAAFKAVTDGKQ 854 Query: 652 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 711 VAVLVPTTLLA QH + F +R + +PV I+ +SRF++ E QI + G++DI++GTH Sbjct: 855 VAVLVPTTLLASQHLNTFTERMSQFPVTIKQLSRFQTDAEAEQIRKGLIAGEVDIVVGTH 914 Query: 712 KLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR 771 +LLQ++ +FKDLGL+IVDEE RFGV HKE++KA+RA+VD+L ++ATPIPRTL MA++G+R Sbjct: 915 RLLQTETRFKDLGLVIVDEEQRFGVEHKEKLKALRAHVDVLAMSATPIPRTLEMAITGIR 974 Query: 772 DLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAE 831 ++S I TPP R V TFV Y+ V AI RE+LR GQV+YL+N VE+I+KAA RL E Sbjct: 975 EMSTITTPPEERHPVLTFVGGYEDKQVGAAIRRELLRDGQVFYLHNRVESIEKAATRLRE 1034 Query: 832 LVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 +VPEAR+ + HG+M E LE++M DF + F+VLV TTIIE+GIDIP ANT+I+ERAD Sbjct: 1035 IVPEARVVVAHGKMGENRLEQIMQDFWNGEFDVLVSTTIIESGIDIPNANTLIVERADLL 1094 Query: 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLE 951 GL+QLHQ+RGRVGR +AYA+ + P K +T A +RL +A +LGAG +A DLE Sbjct: 1095 GLSQLHQIRGRVGRGRERAYAYFMYPPEKPLTEQAHERLATVAQHTELGAGMYVAMKDLE 1154 Query: 952 IRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSL 1011 IRGAG LLG EQSG + +GF LY+ ++ +AV K +E L + +++L + + Sbjct: 1155 IRGAGNLLGGEQSGHIAGVGFDLYVRMVGDAVRTFKGAKEEIL-----TEVKIDLPVDAH 1209 Query: 1012 LPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQ 1071 +P D+IP RL Y+++A + + EL+E++ E+ DR+G LP L+ +AR R A+ Sbjct: 1210 IPYDYIPVERLRLEMYRKLAEVRDDAELDEVRTEMADRYGDLPAEVDNLVHVARFRLLAR 1269 Query: 1072 KLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLL--QKQPQHYRLDGPTRLKFIQDLSERK 1129 G+ + + + + L + L R + Sbjct: 1270 AAGLSDVSLQGRHIRLSSITLSDSKQLRLKRHYPDSVYKKAAELISVPRPHTARVGGSPM 1329 Query: 1130 T---RIEWVRQFMRELEE 1144 ++W + ++++ E Sbjct: 1330 EGPALLQWCAELIKDVTE 1347 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 83/443 (18%), Positives = 150/443 (33%), Gaps = 48/443 (10%) Query: 22 LTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDS 80 AA VA +A + V+ + + L ++ V WETLP++ Sbjct: 40 APAAARPFTVAALA-QAERTVLAVTATSREGEELTQSLAGLLPDGSVAFYPAWETLPHER 98 Query: 81 FSPHQDIISSRLSTLYQLPTMQR---GVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLS 137 SP D + RL+ L++L Q V++ PV +L+Q + + G+ Sbjct: 99 LSPRSDTVGKRLALLHRLAHPQGAPLRVVVAPVRSLLQPQL-KGLGDLKPVRLAVGESTD 157 Query: 138 RDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDV 197 L +L Y VD V + GE+A RG +LD+FP E P R++FF DEI+S+R F V Sbjct: 158 LSDLAAELSDLAYARVDLVEKRGEFAVRGGILDIFPPTDEHPSRVEFFGDEIESIRSFAV 217 Query: 198 DSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGI 257 QR+L++ + + P E R + + + + +Q+++G G+ Sbjct: 218 ADQRSLDKADTLFAPPCRELLLSP----RVRERAAELGQQHPGLAELCEQLAQGIPVEGM 273 Query: 258 EYWQP-LFFSEPLPPLFSYFPANTLLV--NTGDLETSAERF----QADTLARFENRGVDP 310 E P L ++ L P T++V + + + A + A + Sbjct: 274 ESLTPALLGADQLELFVQTMPRGTVVVQCDPERIRSRAHDLVATSEEFLQASWAAAATGG 333 Query: 311 MRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTK----------------------- 347 P+ + + + ++ + Sbjct: 334 KAPIDLDAAAFKSLSDVRQAASDHGCPWWSMGPFGVTEDLSPAQLEERKRARELAEITGE 393 Query: 348 -------AANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGE 400 A ++ P ++++ V G E E Sbjct: 394 GFEELVVADETSVTVTATPAPLYHGNSVKVTGDVKRW-TNDGWRVCLVFAGHGLAERAVE 452 Query: 401 LLARIKIAPQRIMRLDEASDRGR 423 LA + + GR Sbjct: 453 QLAEAGVGASLADSVTRPDSDGR 475 >UniRef50_C7NE08 Transcription-repair coupling factor n=4 Tax=Fusobacteriaceae RepID=C7NE08_LEPBD Length = 1068 Score = 824 bits (2130), Expect = 0.0, Method: Composition-based stats. Identities = 328/1064 (30%), Positives = 548/1064 (51%), Gaps = 115/1064 (10%) Query: 77 PYDSFSPH-QDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQR 135 +++ S + +DI + L L ++ +L V +Q F + G+ Sbjct: 99 IFENISQNKEDITGINIRLLDILKNQEKFILFVN----LQITLDIFFEKVKFFSFEIGKE 154 Query: 136 LSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVF 195 S + L GY + + G+Y+ RG +LD+FP E P RL+FF DE++S+RVF Sbjct: 155 YSFSKIVKFLVENGYETSYLIEKKGQYSRRGDILDIFPPDLENPVRLEFFGDELESIRVF 214 Query: 196 DVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPA 255 D+DSQ ++E++E I + + IEL + + + E Sbjct: 215 DIDSQISVEKMEEIKVFGNLLSGNNYELIELIDELKAEDVTIAIENEE------------ 262 Query: 256 GIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLL 315 L Y +L++ ET +R++ Sbjct: 263 ----------------LLDYKMEEFILLDRSREETYRKRYEN------------------ 288 Query: 316 PPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALR 375 L+ +F + KN+ + Q++T + + + + + Sbjct: 289 ------LKKKSIFVQTKNFSQEQIETFRDKNRLEKLS---KIEDIYIFTNSYEKKMAEFG 339 Query: 376 KFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFV 435 + + E E L I D + + Sbjct: 340 Q----------ILTDKENNLEIEKYELFEGFIFNDNSENPDNKNRKN------------- 376 Query: 436 DTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAG 495 N ++ + +L G R+ + + + ++ G V+H+++GVG Y G Sbjct: 377 ----NFIVLTDRELDGYIYERK-----KKTAKAIKYKKVNQIIEGDYVIHVQYGVGIYKG 427 Query: 496 MTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQ 555 + T+E +YL + YA++ LY+PV L + +Y + L +LG + R R+ Sbjct: 428 IQTME----ERDYLKIKYADEDILYIPVEKLDRLEKYVS-NDTEPQLFRLGTRGFKRKRK 482 Query: 556 KAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSD 615 K E ++ AAEL+ I A+R ++ GF ++ D + F +FPFE T DQ AIN V D Sbjct: 483 KLEEDIQKFAAELIKIQARRQSQNGFVYQKDTVWQEEFEANFPFEETEDQRNAINDVKKD 542 Query: 616 MCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 M P MDR+VCGDVG+GKTEVAMRAAF A+DN KQV ++ PTT+LA+QH++ F+ RF N Sbjct: 543 MESPQIMDRIVCGDVGYGKTEVAMRAAFKAIDNGKQVVMVAPTTVLAEQHFERFKRRFEN 602 Query: 676 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFG 735 +P+ IE +SR +K T IL + G ID++IGTH+LL DV+FK+LGLLI+DEE +FG Sbjct: 603 YPITIENLSRLTKSKS-TDILKNLKNGIIDLVIGTHRLLSDDVQFKNLGLLIIDEEQKFG 661 Query: 736 VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDS 795 V+ KE++K+ R +D+LTLTATPIPRTLN+AM G+R++SII TPP RL + T + ++D Sbjct: 662 VKAKEKLKSQREKLDVLTLTATPIPRTLNLAMLGIREISIIDTPPTNRLPIITEILDWDE 721 Query: 796 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE-ARIAIGHGQMRERELERVM 854 +++ AILRE+ R GQV+Y+YNDV+N+++ + L E++P+ +I +GQ+ +E++ + Sbjct: 722 EIIKMAILRELSRDGQVFYIYNDVKNMKEKLKELKEMLPDFVKIEFINGQLPPKEIKDKL 781 Query: 855 NDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL 914 F + +F++L+ +TIIE GID+ ANTI+IE GL+Q++QL+GRVGRS+ Q Y +L Sbjct: 782 LRFENGQFDILIASTIIENGIDVGNANTILIENFTGLGLSQVYQLKGRVGRSNRQGYCYL 841 Query: 915 LTPHPKAMTTDAQKRLEAIASLEDLGA-GFALATHDLEIRGAGELLGEEQSGSMETIGFS 973 L + +T +++ E++ +E + + GF ++ DL+IRGAGE+LG++Q G++ET G+ Sbjct: 842 L--KTRNITKQGRQKEESMLKVEGIKSGGFQISMEDLKIRGAGEILGDKQHGTIETFGYD 899 Query: 974 LYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASA 1033 LY+++L + K +E E+ L +P+ +I + + RL+ YKR A Sbjct: 900 LYIKMLNEEIRKQKGEFIEKIE-----NVEIILDERGFIPETYI-EKDERLNIYKRFAML 953 Query: 1034 KTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKN 1093 +T++EL ++ E+ DRFG +P+ + + +L+ A+K I+++ + F E Sbjct: 954 ETDSELTDLLDEIRDRFGKIPEQMKKFILSIKLKLFAEKHKIQRILETRNHFELYFLENA 1013 Query: 1094 HVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQ 1137 +I L + + ++ I+ + +K E + Sbjct: 1014 Q---EKIIEL----NKKISMQLVEKVITIESIKNKKKSDEETNE 1050 >UniRef50_D1B5L3 DEAD/DEAH box helicase domain protein n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B5L3_THEAS Length = 994 Score = 819 bits (2116), Expect = 0.0, Method: Composition-based stats. Identities = 326/1059 (30%), Positives = 505/1059 (47%), Gaps = 119/1059 (11%) Query: 39 AGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQL 98 V+I P + + L +++ ++ L +P Q + R L Sbjct: 18 PDRFVVILPGWSDVVTLSSDLACLGREVSPLLPP---VPLGVKEGVQAHLLHRGRVLEDW 74 Query: 99 PTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVME 158 + G++ ++ + P ++KG R R +L + S GY V V Sbjct: 75 IRLGGGLITSAAGAVLPALSPSGHFQ-----LRKGDRC-RSSLIHWISSQGYERVPVVWA 128 Query: 159 HGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFP 218 G++A RGAL+DLFP G + R+ F DD ++ +RVF ++QR + +++ + Sbjct: 129 PGQWALRGALVDLFPPG-DRAIRVAFDDDLVEEIRVFSPETQRAVASLDSWEM------- 180 Query: 219 TDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSY-FP 277 G L G L P Sbjct: 181 --------------------------------GGLKGGRSL-----------TLLDVPVP 197 Query: 278 ANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRV 337 ++ G +E E E P L S ++ RV Sbjct: 198 FGLVVFEPGQVEIQCESAVWLWEQMREEIHSLPGAA---------DWSSLASRVQGVIRV 248 Query: 338 QLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREA 397 + + +++P+ A + ++ + + + +F + G Sbjct: 249 SSS-------QGDPSAMLERVPNFAGRLKEA---EGFVLDMRSKGFRTLFLGSTRG---- 294 Query: 398 LGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARR 457 ++ A+ G ++ G+A G +D + + E D+ G R Sbjct: 295 ----------------YVEWAAGCGMEVIRGSASEGALDLSERVLYLSEVDVAGVRPPSS 338 Query: 458 RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDA 517 L L G +VH ++GV R+ G+ +E GG+ +Y+ L +A Sbjct: 339 PAGKPPA-------DVLDSLISGDLMVHEDYGVCRFLGIEMIEQGGVQQDYIALEFAQGK 391 Query: 518 KLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAA 577 +L +P + + RYAG A L L WSR+ Q+A EK R+ A LL A+R + Sbjct: 392 RLLMPTYRIARLYRYAG-DPAEAELDSLKRGRWSRSYQEAKEKAREAAERLLSAQARRHS 450 Query: 578 KEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV 637 G AF + + +FP+ T DQ + + +DM +P+ MDRL+ GDVGFGKTE+ Sbjct: 451 ARGIAFDPLEREMEELRSTFPYRETVDQVRCWEEIRADMERPVPMDRLLVGDVGFGKTEL 510 Query: 638 AMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILA 697 A+RAAF A + QV V+ PTTLLA QH F R + +P+R+E + RF Q +IL Sbjct: 511 ALRAAFKAAMSGYQVVVVTPTTLLASQHLSTFASRLSPFPLRVEALYRFVPRSRQEEILN 570 Query: 698 EVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTAT 757 + AEG++DILIGTH++L DV+ ++LGL+++DEEHRFGV KER + D+L L+AT Sbjct: 571 DFAEGRVDILIGTHRILGDDVRARNLGLIVLDEEHRFGVMQKERWRERFPGADVLMLSAT 630 Query: 758 PIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYN 817 PIPRTL +A+ G +D+S++ TPP R V T V + +V+ A+LRE+ RGGQV++++N Sbjct: 631 PIPRTLQLALGGYKDISVMTTPPVDRRPVVTVVSPWQDELVKGAVLRELSRGGQVFWVHN 690 Query: 818 DVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 877 ++++ +A R L+P R+ + HG+MR+ ELE +M F R +VL+CTTIIE+G+D+ Sbjct: 691 RIQSMHRAFLRAKALLPGVRVEMAHGRMRDSELESLMARFVEGRLDVLLCTTIIESGLDL 750 Query: 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 P NTII+E A GLAQL+QLRGRVGR QA+A L P A +RLEAI SLE Sbjct: 751 PRVNTIIVEDAHRMGLAQLYQLRGRVGRRSDQAFALFLYPRGAEA-GRALERLEAIGSLE 809 Query: 938 DLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDL 997 +LG+GF LA DL IRG GELLG Q G + ++ LY ++LE V LK G E Sbjct: 810 ELGSGFHLAMMDLSIRGGGELLGTAQHGHVSSLSPELYFQMLEREVTRLKGGAELPP--- 866 Query: 998 TSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPA 1057 VE +P+ ++ D R+ Y+R+ +EL++++ E++DRFG +P Sbjct: 867 ------VEWGYSPSIPEWYVEDQPLRVRLYRRLFLPMDASELDQLRDEMVDRFGPVPHQV 920 Query: 1058 RTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVN 1096 L+ ARLR L ++ + F + V Sbjct: 921 EELILAARLRVLLAGL-ASEITIGRDQVQVRFRDSAAVP 958 >UniRef50_B5YL15 Transcription-repair coupling factor n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YL15_THEYD Length = 1042 Score = 819 bits (2115), Expect = 0.0, Method: Composition-based stats. Identities = 322/948 (33%), Positives = 539/948 (56%), Gaps = 24/948 (2%) Query: 201 RTLEEVEAINLLPAHEFPTDKA----AIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAG 256 + + V++ + P E K E + K + + S+ Sbjct: 105 KIITTVDSAKIPPHIETINIKKGGTIEREFLAKNLINLGYSKVELVTQEGEFSEHGWVFD 164 Query: 257 IEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLP 316 I + + L D + S + + + E + ++ + L Sbjct: 165 IWG-IGEEYPARIEFFGDEIEEIKLFY--PDTQRSFKDKNEIWIIQAEEKEINNIELLEL 221 Query: 317 PQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRK 376 + + + K + V++ + + + G + L + +++ + + Sbjct: 222 FEFDNIFTVDKNFTNKKFNIVKISHLPVKFSTKSVDAGDKTFYGLGILPNERSSILDFPR 281 Query: 377 FLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRY-LMIGAAEHGFV 435 L+ P++FS+ S G+ E + E+L I I + + + G+Y + I + GF Sbjct: 282 NLKKLGIPIIFSISSRGKAETIKEVLFNHDIIAPLIHKNEIGTYSGKYAITISDLQEGFY 341 Query: 436 DTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAG 495 NL +I + +L GE+ ++++ + + + D L E++ G +VH EHG+G + G Sbjct: 342 --RENLMIITDFELFGEKTLKKKKLAIQKLPIDGL-----EINEGDYIVHKEHGIGIFRG 394 Query: 496 MTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQ 555 + + G + L+L Y + LYVP ++ I RY+ P+ KLG + W +A++ Sbjct: 395 IKRQKYEGTEEDVLVLEYKDGDILYVPTWNIGKIYRYSAKEGFIPPIDKLGSNRWQKAKE 454 Query: 556 KAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSD 615 + +++ D+A +L+ +YAQR + GF + D E ++ F D FP+E T DQ +AI+A+L Sbjct: 455 RERKRIHDIADKLIKLYAQRKTERGFIYSEDTEIHKNFDDFFPYEETEDQQKAIDAILKK 514 Query: 616 MCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 M +P M+ L+CGD G+GKTEVAMRA+F AV + KQVAVLVPTTLL +QHY F+ RF Sbjct: 515 MREPFPMEVLLCGDAGYGKTEVAMRASFRAVYDGKQVAVLVPTTLLCEQHYRTFKKRFEA 574 Query: 676 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFG 735 +PV+IE +SRFRS KE +++ + GK+DILIGTH ++ +V F DLGLLI+DEE +FG Sbjct: 575 FPVKIEYLSRFRSEKEIKKVIEDTKLGKVDILIGTHIIILKEVDFFDLGLLIIDEEQKFG 634 Query: 736 VRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDS 795 V HKE+IK VD++T+TATPIPRTL + +SG+ D+ +I TPP RLAVKTFV + + Sbjct: 635 VIHKEKIKEKYPKVDLITITATPIPRTLQIGLSGLWDIFVIQTPPKERLAVKTFVIQENE 694 Query: 796 MVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMN 855 ++++EAI +EI RGGQ+Y+L+N + +I+ ++ +LVP ARI + HG+M+E+ L+++M Sbjct: 695 LIIKEAIEKEIQRGGQIYFLHNRIHDIELVKSKIQKLVPMARIGVAHGRMKEKMLDKIML 754 Query: 856 DFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLL 915 DF + + ++L+CT+II +G+DIP NTIII++A FGL+ L+Q+RGRVGRS+ QA A+L+ Sbjct: 755 DFIYGKIDILLCTSIIASGLDIPNVNTIIIDQAQTFGLSDLYQIRGRVGRSYRQANAYLV 814 Query: 916 TPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLY 975 P + ++ DA+KR++AI + LGAGF +A DLEIRGAGELLG EQSG + +GF LY Sbjct: 815 IPPEEILSEDAKKRIKAIQEMSYLGAGFHIALRDLEIRGAGELLGVEQSG-VNRLGFDLY 873 Query: 976 MELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKT 1035 +E+L AV +K P+L+ E++ +P+ +P+++I + R+ Y++++ Sbjct: 874 IEMLNEAVKEIKGEVLPALKL-----PEIKFSIPAFIPEEYIKETPMRIRIYRKLSQISE 928 Query: 1036 ENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHV 1095 ++E+E++ E+IDRFG+ P + IAR+R K+ +++ + +F + ++ Sbjct: 929 DSEIEKLYDEIIDRFGMPPKEVENIFKIARIRLLVSKIKASEVKQKKN--TFKFKMEENL 986 Query: 1096 NPAWLIGLLQKQPQHYRLDGPTRLKFIQD-LSERKTRIEWVRQFMREL 1142 + ++ LL LKF QD ++ + F++ L Sbjct: 987 DTGFVNRLLHILTGFKNRGIIKNLKFYQDGFEVNIEELDGLILFLKRL 1034 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 99/227 (43%), Gaps = 30/227 (13%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD-----QMVMNLADW 73 + L+ + + + ++ + A +L+ F+ ++ L Sbjct: 32 IYNLSITSFSLFICFY----KNNFIVFEENEDQAAKLYAAFKTFSSFFNTTDEIVFLPSK 87 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKG 133 T R+ ++++ + +I V++ ++ PH + +KKG Sbjct: 88 GT--------------ERMIAIFKILNERNKKIITTVDSA--KIPPH----IETINIKKG 127 Query: 134 QRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193 + R+ L L + GY V+ V + GE++ G + D++ +G E P R++FF DEI+ ++ Sbjct: 128 GTIEREFLAKNLINLGYSKVELVTQEGEFSEHGWVFDIWGIGEEYPARIEFFGDEIEEIK 187 Query: 194 VFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 +F D+QR+ ++ I ++ A E + + ++ + F V ++ Sbjct: 188 LFYPDTQRSFKDKNEIWIIQAEEKEINNIELLEL-FEFDNIFTVDKN 233 >UniRef50_C5F1R4 Transcription-repair coupling factor n=2 Tax=Helicobacter RepID=C5F1R4_9HELI Length = 1008 Score = 811 bits (2094), Expect = 0.0, Method: Composition-based stats. Identities = 316/1116 (28%), Positives = 543/1116 (48%), Gaps = 123/1116 (11%) Query: 31 VAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISS 90 + + E++ ++ + D +A +L +++ F L D + + +Q+ + Sbjct: 14 LRDFQEKYQNGLICLTKDKNDAQKLA-DVASFLGIQSFVLEDLRAVFGEDLRSYQEELRE 72 Query: 91 RLSTLYQL-PTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAG 149 L+TL T +L P+ TL+ + L G + G+ L + L G Sbjct: 73 ILNTLKNFYTTNSPKILFSPLQTLLNPMPKLEALEG--FSIAFGESLELREFQETLLHFG 130 Query: 150 YRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTL-EEVEA 208 Y V+ V GE + RG ++DLF E P RL F +EI+S+R FDV +Q EE+E Sbjct: 131 YEFVELVEMSGEVSIRGDIIDLFLPNYENPIRLSLFCNEIESIRFFDVQTQLCFQEEIEK 190 Query: 209 INLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEP 268 + +LPA F + E S+ ++ + E+ G+ + + + Sbjct: 191 LEILPAF-FNLSAKSYEELLSKIQEA-----NIENSLHYQGNLIAAYGLWFLEE---KQN 241 Query: 269 LPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELF 328 L ++ Y A + + + L+ E EL Sbjct: 242 LLEIYPYLKAPNI-----------QDLLDELLSFQEQNK------------------ELL 272 Query: 329 SELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFS 388 ++ +++ + + A N+ +F + ++ Sbjct: 273 KQILEHKSIEVSQNYEDFECAFRNIPT------------------FLEFHKNKKITIIAK 314 Query: 389 VESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESD 448 ES R+ + L K L++G + ++ + + Sbjct: 315 TESLIRQAGIS--LGEHK---------------EYQLVLG--------KDYGIWILGKDE 349 Query: 449 LLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY 508 L+ + +Q + + EL +G VVH+++GV + G+ G T ++ Sbjct: 350 LILSLNTKTKQKKKFANK-----ILIDELKVGDYVVHIDYGVALFNGIVQANIFGATRDF 404 Query: 509 LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAEL 568 + L Y + KL +PV +L I RY L KLG +++R ++K EK+ +A + Sbjct: 405 IELKYLGEDKLLLPVENLDRIDRYIADGGI-PILDKLGKGSFARLKEKVKEKLFVIANGI 463 Query: 569 LDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCG 628 + + A+R +G ++E+ +F + F T DQ++AI + D+ MDRL+ G Sbjct: 464 IALAAKRELIDGIVLDTNKEEILIFQNQSGFIYTKDQSKAIEEIFKDLSSGRVMDRLLSG 523 Query: 629 DVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRS 688 DVGFGKTEVAM A F++ + Q A++ PTTLLA QHY + RF ++ ++I + R+ Sbjct: 524 DVGFGKTEVAMNAMFVSYLSGYQSAIITPTTLLAYQHYLTIKSRFESFGIKIARLDRYIG 583 Query: 689 AKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRAN 748 KE+ IL + +G I ++GTH LL +V FK+L L+++DEEH+FGV+ KERIK + N Sbjct: 584 TKEKKAILEGLKDGTIHAVVGTHALL--NVSFKNLALIVIDEEHKFGVKQKERIKEIAQN 641 Query: 749 VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILR 808 +L+++ATPIPRTLNMA+S ++ LS + P++RL +TFV+EY +++E ILRE+ R Sbjct: 642 THLLSMSATPIPRTLNMALSHIKGLSELKEAPSQRLPTRTFVKEYSDSLLKEVILRELRR 701 Query: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868 GGQV+Y++N++ I + E + ++P +IAI H Q++ +E E ++ +F FN+L+CT Sbjct: 702 GGQVFYIHNNISTINQKKEEILTILPHLKIAILHSQIQAQESENIIMEFAKGNFNLLLCT 761 Query: 869 TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQK 928 +I+E+GI +P ANTI++ R+D FG+A LHQLRGRVGR + + + L ++T +AQK Sbjct: 762 SIVESGIHLPNANTILVGRSDCFGIADLHQLRGRVGRGSKEGFCYFLIEDSSSITQEAQK 821 Query: 929 RLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKA 988 RL A+ LG+G ALA HDLEIRG G LLGE QSG ++ IG+SLY+ +LE A+ L Sbjct: 822 RLLALEKNAYLGSGGALAYHDLEIRGGGNLLGEAQSGHIKNIGYSLYLRMLEEAIYQLSG 881 Query: 989 GREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELID 1048 + +V+L + + L + I RL Y+R++ + E+ + I+ E+ + Sbjct: 882 NIK-----EEKANIDVKLSVTAFLNPELIASEKLRLEIYRRLSRCEEESAVYGIESEIEE 936 Query: 1049 RFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQP 1108 RFG L + + + ++ +A+K GI + ++ I F + Sbjct: 937 RFGALDIYTKQFIALIVIKIKARKQGIINILNYQQN--ITFVD----------------- 977 Query: 1109 QHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 + + + +E V +++ L+ Sbjct: 978 -----TKGEKTTIAAKSKDEEDILESVMKYLESLKG 1008 >UniRef50_Q89L81 Bll4667 protein n=2 Tax=Bradyrhizobium RepID=Q89L81_BRAJA Length = 1093 Score = 800 bits (2067), Expect = 0.0, Method: Composition-based stats. Identities = 313/1139 (27%), Positives = 502/1139 (44%), Gaps = 99/1139 (8%) Query: 12 KAGEQRLLGELT--GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVM 68 K ++ + + G+ L+A+ + +V +A A RL I V+ Sbjct: 44 KGSQRATISSSSPLGSMALHLLAQWKQSGRSGIVFLAESENRAERLGSVIHALDPACEVL 103 Query: 69 NLADWETLPYDSFSPHQDIISSRLSTLYQLP-TMQRGVLIVPVNTLMQRVCPHSFLHGHA 127 TLP+D P ++ R S L +L + + L+ +M+R+ P + L + Sbjct: 104 VFPRLNTLPFDQLEPSHELAGRRASVLRRLAKSRKPLFLVSTAEAVMERLPPPASLSRLS 163 Query: 128 LVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDD 187 + +K G S LR +L+ GY D+ G G ++FP G+ P+R++ Sbjct: 164 VSLKVGGAFSERDLRGRLEELGYDLEDEPDYPGGALFHGQTFEIFPAGALGPFRIEHSGR 223 Query: 188 EIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQ 247 I + FD + E + + P E + + + Sbjct: 224 AISRIVAFDPKEHDIIFETSELLVDPMSE------RLAFAGKRGKR-------------- 263 Query: 248 VSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRG 307 LF Y + + G Sbjct: 264 ----------------------ATLFDYCGRAKWIADAGVPLHV----------DGWLST 291 Query: 308 VDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQ 367 ++ P + ++ + + + FQ +P+ + Sbjct: 292 IEEAAPRAEREREYIGRRDWKQLSRGMKVLPRTAS------------FQPIPEFSKLTSS 339 Query: 368 KAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR--GRYL 425 + L A + ++ E + + + QR DEA G Sbjct: 340 RKALRAFVEETRRAGSRLILVAAQEDDLRVMERM---GGVKAQRCENWDEAVRGRSGEAA 396 Query: 426 MIGAAEHGFVDTVRN-LALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVV 484 ++ + GFV + L ++ SD+LG R Q R + ++ E G VV Sbjct: 397 LLADLDAGFVVPGKKSLVVVTASDVLGSRAH-HPQPMARAWSAAFDHADVPE--QGTVVV 453 Query: 485 HLEHGVGRYAGMTTLEAGGIT-GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLH 543 HL+ G+ G+ T+ GG E + L +A D + VP L L+ YA + A L Sbjct: 454 HLQRGLAVLDGLQTVNTGGGALREMIRLVFAGDNAVLVPPPDLALMWPYATEPGKLA-LD 512 Query: 544 KLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTP 603 K G +W R +A +++ L +QR + Y+ F FP+ TT Sbjct: 513 KADGSSWWARRTEAEREIQIAGKVLAKHISQRRRRRADKLVPPGSAYEKFVARFPYFTTV 572 Query: 604 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQ 663 DQA+AI VL D+ MDR++CGDVGFGKTEVA+RAA V + KQVA+ VPTT+LA+ Sbjct: 573 DQAKAIRDVLEDLASGHPMDRVICGDVGFGKTEVALRAAAAVVLSGKQVAIAVPTTVLAR 632 Query: 664 QHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 723 QH F+ RFA + + + +SR S E + G+I +++GT L DVKF DL Sbjct: 633 QHVATFQKRFAPFDIEVGNLSRATSGAELRATREGLRSGRIKVVVGTQALGGKDVKFDDL 692 Query: 724 GLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 783 GL+I+DEE FG K R+ ++ NV +L ++ATPIPRTL ++G RDLS+IA+PP R Sbjct: 693 GLVIIDEEQHFGAAEKARLSSLAKNVHVLMMSATPIPRTLAAGLAGFRDLSVIASPPVHR 752 Query: 784 LAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHG 843 L V T + + A+LRE R GQ + + ++++ R+ + + RI HG Sbjct: 753 LPVATRIAPLSDAAIASALLREQRRHGQSFLICPRIQDLDPMLARVQAVAGDLRIVCLHG 812 Query: 844 QMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRV 903 ++ E++ M F R +VL+ T I+E+G+DIP ANTI++ + FGLAQLHQLRGRV Sbjct: 813 RLAADEIDDRMMSFVEGRADVLLATNIVESGLDIPRANTIVVCWPEKFGLAQLHQLRGRV 872 Query: 904 GRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQ 963 GRS +A+A LLT + ++KRL + GAGFA++ DL++RGAG+L E+Q Sbjct: 873 GRSGIRAFAHLLTETN---SGQSEKRLAVLEEFSRPGAGFAISERDLDLRGAGDLFSEQQ 929 Query: 964 SGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTR 1023 SG ++ G LY LL+ A + + R ++ L + +LP+ ++ R Sbjct: 930 SGHVQVFGPVLYSHLLKMASEKVDEERAAV------WVPDLNLPVADMLPETYVHSEPVR 983 Query: 1024 LSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 L Y R A +E++L +++ E RFG LP AR A+LR + ++ GI +L+ Sbjct: 984 LELYARAARCSSEDDLVDLEEETSRRFGPLPKVARDFFAAAKLRLECKRRGIIRLDVGLG 1043 Query: 1084 GGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSE-RKTRIEWVRQFMRE 1141 F L G L+K R+ + + + R+E + + + E Sbjct: 1044 AVAATF----------LPGRLRKSRGKSLQRDGDRVVYHSQMRDAPFERVEELFEVLDE 1092 >UniRef50_Q5SJW3 Transcription-repair coupling factor n=3 Tax=Thermus RepID=Q5SJW3_THET8 Length = 978 Score = 797 bits (2060), Expect = 0.0, Method: Composition-based stats. Identities = 343/950 (36%), Positives = 481/950 (50%), Gaps = 47/950 (4%) Query: 208 AINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSE 267 + + P E +KA L + F + + +V + E Sbjct: 52 KVYVNPGLEALEEKALFVLSYEEALSPFPEDPEAWRLLLEVGRAYP---REALLSRLLKL 108 Query: 268 PLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDEL 327 Y +L +L F D L R RG + R +L P+ Sbjct: 109 GYARDEDY----RVLGEVVELGEVRLEFFGDELERLVVRGEERRRHVLLPKPGKAEGFTS 164 Query: 328 FSELKNWPRVQLKTEHLPTKA-----------------ANANLGFQKLPDLAVQAQQKAP 370 L V L T L KA L P + KA Sbjct: 165 KKVLHFPGPVYLDTPALAPKALWPLLAGRPWVALGGGVELPPLELGARPLPPYRGSLKAL 224 Query: 371 LDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAA 430 L ++L +F G L L R++ I+ L+ G Sbjct: 225 EKDLARWLAEGKRVHLFV----GHARTLEYLKRRLQAFSPLILDRFPGPKGRLALLPGDF 280 Query: 431 EHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 E G L+ E+ + R R + + L G ++H EHGV Sbjct: 281 EGGAEWGE--WVLLTEALVFATGGVRARVRV------GEGLSDPGALSPGDYLIHPEHGV 332 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW 550 G+Y G+ T E G+ +YL+L Y + KLY+PV L L+ R+ G ++ L LG + W Sbjct: 333 GQYLGLETREVLGVKRDYLVLRYKGEGKLYLPVEQLPLLKRHPGTTDDPPELSSLGKNEW 392 Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 RA+++A + V ++A LL + A+R A G AF E L FP+E TPDQ +A+ Sbjct: 393 QRAKERARKDVEELAGRLLVLQAKRKATPGRAFPPLPEWDPLVEKGFPYELTPDQKRALE 452 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 VL D+ P MDRLV GDVGFGKTEVA+RAA V + QVA LVPTTLLA+QH FR Sbjct: 453 EVLRDLESPHPMDRLVSGDVGFGKTEVALRAAHRVVGHGAQVAFLVPTTLLAEQHGKTFR 512 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 +RF PVR+ ++SRF KE+ IL +AEG +DI+IGTH+LLQ DV+F+DLGLLIVDE Sbjct: 513 ERFQGLPVRVAVLSRFTPPKEEEAILKGLAEGTVDIVIGTHRLLQEDVRFRDLGLLIVDE 572 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 EHRFGV KERI+ ++A VD L L+ATPIPRTL A+ G++DLS I TPP R +KTF+ Sbjct: 573 EHRFGVAQKERIRELKAEVDTLYLSATPIPRTLYSALVGLKDLSSIQTPPPGRKPIKTFL 632 Query: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 +D ++VREAIL E+ RGG+V+Y+++ V +I+ L LVPEARI + HGQM E + Sbjct: 633 APFDPLLVREAILFELERGGKVFYVHDRVASIEARRRFLENLVPEARIGVVHGQMPESLI 692 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 E M F ++VL+ TTIIE G+D+P ANTI+IERAD GLA L+QLRGRVGR +A Sbjct: 693 EETMLLFAEGAYDVLLATTIIEAGLDVPEANTILIERADRLGLATLYQLRGRVGRREEEA 752 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 YA+L P +T A+KRL AIA L DLG+G LA D+EIRG G LLG EQ G + + Sbjct: 753 YAYLFHPP--RLTEAAEKRLAAIADLSDLGSGHLLAERDMEIRGVGNLLGPEQHGHIRAL 810 Query: 971 GFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI 1030 +Y ELLE A+ LK + + ++L + + LP +++ + R +Y R Sbjct: 811 SLEVYTELLEEAIRKLKGEAK-----EERRHVTLDLALSARLPAEYVGSLEARSRYYSRF 865 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFA 1090 A AK+ EL + EL +R+G LP+ A + +ARLR A++ G+ + + F Sbjct: 866 AEAKSLAELSRLVRELKERYGPLPEEAENFVALARLRLVAERKGVVSITEGLTHLEVVF- 924 Query: 1091 EKNHVNPAWLIGLLQKQPQHYRLD-GPTRLKFIQDLSERKTRIEWVRQFM 1139 + ++ L+ P L P + + + E + + + Sbjct: 925 PRYPLDYDA--RGLKGLPYRVELTQYPPGFRLEKKGLRPRDYPEALMEVL 972 Score = 74.2 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 29/162 (17%), Positives = 59/162 (36%), Gaps = 41/162 (25%) Query: 31 VAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISS 90 A + + A P +L+ P+ + R + ++S F V E L Sbjct: 20 AALLFAQEAPPALLLVPEARL--RRYRDLSAF-GAKVYVNPGLEAL-------------- 62 Query: 91 RLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGY 150 ++ + ++ + L+++ G+ R+AL ++L GY Sbjct: 63 ----------EEKALFVLSYEEALS--PFPEDPEAWRLLLEVGRAYPREALLSRLLKLGY 110 Query: 151 RHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 + +Y G +++L RL+FF DE++ L Sbjct: 111 ARDE------DYRVLGEVVEL------GEVRLEFFGDELERL 140 >UniRef50_B4CX01 Transcription-repair coupling factor n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX01_9BACT Length = 1082 Score = 796 bits (2056), Expect = 0.0, Method: Composition-based stats. Identities = 309/794 (38%), Positives = 458/794 (57%), Gaps = 54/794 (6%) Query: 355 FQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMR 414 F+ + + +++ LR++ T V +EG E L +LL ++ Sbjct: 289 FEAGDFVVDEIKRERFFSQLREW-RTEGWRVHVFCNNEGEIERLHDLLPPVEADA----- 342 Query: 415 LDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIR-- 472 +G GF +A++ +++L G R + + R Sbjct: 343 --------LQFTVGTLNCGFTFPSAKVAVLSDAELFGRYRNTRARRMALRRAREQASRSQ 394 Query: 473 -NLAELHIGQPVVHLEHGVGRYAGMTTLE-AGGITGEYLMLTYANDAKLYVPVSSLHLIS 530 + +EL+ VVHLEHG+GRY GM ++ A G T E L+L +A+DA+LYVP+ +L+S Sbjct: 395 IDFSELNEDDYVVHLEHGIGRYEGMKSIPRADGKTEEVLVLAFADDARLYVPLEQSYLVS 454 Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 RY G ++N L LG W++A++ A + V D A++LL ++A+R G+AF D + Sbjct: 455 RYVGVGKKNPALSVLGDGKWAKAKKNAEKAVFDYASKLLAVHAERETAVGYAFPPDNKWQ 514 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 + F SF F+ T DQ AI A +DM MDRL+CGDVGFGKTEVA+RAAF +V K Sbjct: 515 REFESSFLFKETVDQLTAIAASKADMESERPMDRLICGDVGFGKTEVAIRAAFKSVMGGK 574 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 QVA+LVPTT+LA+QHY NFR+R +++PV +E++SRFR+A EQ + + +A+G++DI++GT Sbjct: 575 QVAILVPTTVLAEQHYRNFRERMSDYPVTVELLSRFRTAAEQRKTVQGLADGRVDIVVGT 634 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H+L+ D+ FKDLGL+++DEE RFGV HKER K M VD+LTL+ATPIPRTL +++ G Sbjct: 635 HRLISKDILFKDLGLVVIDEEQRFGVLHKERFKEMFKLVDMLTLSATPIPRTLYLSLMGA 694 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 +D+S I TPP R+ +T + YD ++R+AI RE+ R GQVY+L+N V +I+ +++ Sbjct: 695 KDMSTIETPPLNRIPTETLICPYDERIIRDAINRELSRQGQVYFLHNRVHSIEMMRDKIK 754 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 +L P+AR IGHGQM E ELE VM++F +VL+ TTIIE+G+DIP ANTIII+RAD Sbjct: 755 KLCPKARCVIGHGQMDEHELEDVMHEFVSGAADVLISTTIIESGLDIPNANTIIIDRADR 814 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 FGLA L+QLRGRVGR+ H+AYA+LL P +A++R+ AI LGAGF +A DL Sbjct: 815 FGLADLYQLRGRVGRAQHKAYAYLLLPREMMTQGEARRRINAIKQYSSLGAGFKIAMRDL 874 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLT------------ 998 EIRGAG +LG QSG + IGF LY LL+ A+ LK + + ++ Sbjct: 875 EIRGAGNILGTAQSGHIVNIGFDLYCALLKQAIAKLKGEKVRARLEVVLRTDFVATREAE 934 Query: 999 ------------------------SQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAK 1034 +T + P+ LP +I + R+ Y+++A Sbjct: 935 FLNRSSKIEDGRSEMAGRGSAANSELRTPISDFAPAFLPSVYIGESQPRIQAYRKLAEVT 994 Query: 1035 TENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH 1094 T+ +L+ I+ DR+G+LP+ A LL + ++ A +E + ++ Sbjct: 995 TQEQLDTIRKTWRDRYGVLPEAAENLLVMTEIKLAATARKFTMVEARDGKLILTRGGDYV 1054 Query: 1095 VNPAWLIGLLQKQP 1108 L P Sbjct: 1055 QIGGKFPRLTATDP 1068 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 80/334 (23%), Positives = 142/334 (42%), Gaps = 12/334 (3%) Query: 2 PEQYRYTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ 61 P V+ GE + AA L A + ++ V ++ P+++ +H+E+ Q Sbjct: 15 PPLEAKLALVRKGEAVSFEHVVAAAQPFLAALLVQQAKARVWIVCPNVRTQETMHNELLQ 74 Query: 62 FTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPT-MQRGVLIVPVNTLMQRVCPH 120 + + + + P + P + I+ RL + +L + R V+++ +L V Sbjct: 75 WFPD-ALFFPEIDRAPVEGALPDPESIAERLGIVQRLTSVKGRQVVVLTRASLDDEVPSP 133 Query: 121 SFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPY 180 + L + +++ RL R+ L QL AGY HV QV G++A RG +LD+F LP Sbjct: 134 AALKQLEIRLRRSTRLDREKLLKQLAEAGYEHVPQVSARGQFAVRGGILDVFSFHHSLPV 193 Query: 181 RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRD 240 R++ FDDEIDSLR FD+D+Q +++ ++ + LL E ++A+ +L + + Sbjct: 194 RIELFDDEIDSLREFDLDTQISVQHLDTVTLL-LGEAAAERASCKLQELVTERDITIDAE 252 Query: 241 PEHIYQQV-----SKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERF 295 QV S+G G E + FF L F A +V+ E + Sbjct: 253 ASWFAAQVRIMEHSEGAATEGAEDYSTAFFDHGLGE----FEAGDFVVDEIKRERFFSQL 308 Query: 296 QADTLARFENRGVDPMRPLLPPQSLWLRVDELFS 329 + + + L E + Sbjct: 309 REWRTEGWRVHVFCNNEGEIERLHDLLPPVEADA 342 >UniRef50_Q83N19 Transcription-repair coupling factor n=4 Tax=Bacteria RepID=Q83N19_TROWT Length = 1291 Score = 792 bits (2047), Expect = 0.0, Method: Composition-based stats. Identities = 277/697 (39%), Positives = 412/697 (59%), Gaps = 26/697 (3%) Query: 394 RREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGER 453 ++ + +L + ++ + GF ++ LI E +L G+ Sbjct: 541 QKSYISDLFFKQADPDAV---DSGLIKHRVVVIDSYIQEGFSVPTKSFTLIGEHELFGKT 597 Query: 454 VARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTL--EAGGITGEYLML 511 ++ R + L I VVH HG+ R+ GM + + EYL+L Sbjct: 598 TLQKAPRISRRA------IDPINLAIDDYVVHEIHGIARFKGMCSRRPKHDAPEQEYLIL 651 Query: 512 TYAND-----AKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAA 566 YA + KLY+P L +IS+Y G L ++GG W+ + +A + + +A Sbjct: 652 EYAKNRLGVADKLYIPTDQLSMISKYIGSD--RPTLSRIGGSDWALTKSRARKAISSIAL 709 Query: 567 ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLV 626 +L+ +Y++R+ +G+AF D F + F + T DQ + I AV +DM MDR++ Sbjct: 710 DLVKLYSRRSITKGYAFSPDTPFQTHFENEFLYTETRDQEKTIVAVKADMENSKPMDRII 769 Query: 627 CGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRF 686 GDVGFGKTE+AMRAAF AV ++KQVAVLVPTTLLA+QH F +RF WPV I +SRF Sbjct: 770 SGDVGFGKTEIAMRAAFKAVQDNKQVAVLVPTTLLARQHIQTFCERFDKWPVTIASLSRF 829 Query: 687 RSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMR 746 +S E + + ++ G IDI+IGTH LL ++FKDLGLLI+DEEHRFGV HKE IK ++ Sbjct: 830 QSKSEIQKTICGISSGGIDIVIGTHMLLNKKIQFKDLGLLIIDEEHRFGVNHKEAIKKLK 889 Query: 747 ANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREI 806 +DIL ++ATPIPRTL M++ G++++S ++TPP R+ + T V Y V A+ REI Sbjct: 890 IGIDILAMSATPIPRTLEMSLMGIKEISTLSTPPENRMPILTHVGPYRDKQVIAAVRREI 949 Query: 807 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLV 866 +RGGQV+Y++ND I + A+RL +L+PEAR+ H ++ ER LE+ + DF ++++LV Sbjct: 950 IRGGQVFYIHNDTATISRVAQRLEQLIPEARVVSAHAKLAERMLEKTVIDFWEGKYDILV 1009 Query: 867 CTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDA 926 CTTIIETG+D ANTIII+ A+++GL+QLHQLRGRVGR +AYA+L + A Sbjct: 1010 CTTIIETGLDNANANTIIIDSAENYGLSQLHQLRGRVGRGTKRAYAYLFYTS--TLKDTA 1067 Query: 927 QKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDAL 986 KRLEAIA LGAG +A DLE+RGAG LLG QSG + ++GF LY+ ++ +A+ Sbjct: 1068 YKRLEAIARNNHLGAGAQIAMKDLELRGAGSLLGHAQSGHIASVGFDLYIRMVTDAISNF 1127 Query: 987 KAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVEL 1046 K E + +E+ + + +P ++ R+ YK+I+ A ++ ++++I E+ Sbjct: 1128 KG------EQSRTNNLRLEIPVDASIPKAYVDSERLRIELYKKISEALSDADIKDIGDEI 1181 Query: 1047 IDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEK 1083 +DRFG LP LL++ARLR A GI + Sbjct: 1182 LDRFGNLPSQVINLLELARLRILASSRGIDLITLKSD 1218 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 36/217 (16%) Query: 20 GELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN-LADWETLPY 78 G A VA + +++I P D + + + ++ +W+TL + Sbjct: 61 TACPGGFSACKVASLVGDVD-SLLVILPSEDAC--FTDTLRTYLPESIILNFPEWDTLLH 117 Query: 79 DSFSPHQDIISSRLSTLYQL------------------------------PTMQRGVLIV 108 + SP + +S+R+ L+++ Q+ V++ Sbjct: 118 EQISPSPERVSARMEALHKISLFRKNNKRAKNAQTSKTLHDIGILEDNLPTIHQKLVVVA 177 Query: 109 PVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGAL 168 + MQ + + L G + L + Y D V GE+A RG + Sbjct: 178 SIKAFMQPIIS--DGNPPCLYFHTGGEYELSEIANILVAMSYSRTDLVGARGEFAIRGGI 235 Query: 169 LDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEE 205 LD++P + P R++FF +++S+R F V QR++ Sbjct: 236 LDIYPPTEKHPIRIEFFGRQLESMRHFRVSDQRSIGP 272 >UniRef50_UPI0001745840 transcription-repair coupling factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745840 Length = 1117 Score = 791 bits (2043), Expect = 0.0, Method: Composition-based stats. Identities = 317/813 (38%), Positives = 438/813 (53%), Gaps = 52/813 (6%) Query: 336 RVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRR 395 R L E T LG D VQ ++ + VV + G R Sbjct: 303 RADLAEEDFSTAIFENPLGVFHAGDFVVQEARREQFTRQVEDWRKQKWRVVMFFHNPGER 362 Query: 396 EALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVA 455 E EL+ + L +G GFV LA++ +++ G Sbjct: 363 ERFEELVGG-----------EWLQKHDLELALGLLHRGFVIPAAKLAVLTGAEVFGRYQN 411 Query: 456 RRRQDSRRTINPD---TLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLT 512 RR + +L EL G VVHL++G+G+Y G+ E G E +++ Sbjct: 412 TRRFRGSKLDEAQVLRQARDHLRELREGDLVVHLDYGIGKYGGIEVRE-GARREEVMVIR 470 Query: 513 YANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIY 572 YA DAK++VPVS HL+SRY G L+KLG W + R +A + V + AA +L I Sbjct: 471 YAEDAKVFVPVSQAHLVSRYVGVGSRAPTLNKLGDARWVKTRAQAEKSVEEFAAGMLSIA 530 Query: 573 AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632 AQR +G A D + F SF + TPDQ ++I + DM Q MDRL+CGDVGF Sbjct: 531 AQRQTLKGHAHPPDTKWQVEFEQSFLYRETPDQLKSIAEIKRDMEQEKPMDRLLCGDVGF 590 Query: 633 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ 692 GKTEVA+RAAF AV KQVAVLVPTT+LAQQH F++R +++PV +EM+SR AK + Sbjct: 591 GKTEVAIRAAFKAVMGGKQVAVLVPTTVLAQQHLATFKERMSDYPVTVEMLSRLTPAKRE 650 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 +IL V +G +DI++GTH+++ DV+FK LGL ++DEE RFGV+HKER K + VD+L Sbjct: 651 KEILKGVKDGTVDIVVGTHRVISKDVQFKQLGLAVIDEEQRFGVKHKERFKQLFRLVDVL 710 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 TL+ATPIPRTL + + GMRD+S + TPP R AV+T V YD ++R+AI +EI RGGQV Sbjct: 711 TLSATPIPRTLYLGLVGMRDMSTLDTPPPNRHAVQTSVCGYDERIIRDAINKEIERGGQV 770 Query: 813 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 ++L+N V +++K +L L P+AR+ IGHGQM E LE VM F +VL+CTTIIE Sbjct: 771 FFLHNRVMDMEKMKAKLEALSPKARVVIGHGQMDETLLEDVMRRFIAGEADVLLCTTIIE 830 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 +G+DIP ANTIII+RAD FGLA L+QLRGRVGR +A+A+L+ P DA+KR+ A Sbjct: 831 SGVDIPNANTIIIDRADRFGLADLYQLRGRVGRGGERAHAYLMLPRDLMTVGDARKRVTA 890 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGR-- 990 I LG+GF +A DLEIRGAG LLG EQSG + IGF LY ++L++A L+ R Sbjct: 891 IKQYTALGSGFKIAMRDLEIRGAGNLLGTEQSGHIFAIGFDLYCQMLKSATARLQGRRTP 950 Query: 991 -----------------------------------EPSLEDLTSQQTEVELRMPSLLPDD 1015 D T E R+P +P Sbjct: 951 PPMEVSLRVDFLCMSEAQWLQEADGTPQKRVTAATAHRPPDRQKLVTANEWRIPCFIPQS 1010 Query: 1016 FIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGI 1075 +I D +R++ Y+ + T EL+ ++ D++G P LL A ++ A I Sbjct: 1011 YIEDARSRITAYRLLGEVLTRKELDTLERNWRDQYGPPPPAVENLLVCAGIKLAAAHASI 1070 Query: 1076 RKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQP 1108 +E E ++ + + L P Sbjct: 1071 SAVEVKEGKLMLTRNGQYVLLSGKFPRLTANDP 1103 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 28/231 (12%) Query: 8 TLPVKAGEQRLLGELTGAACATLVAEIAERHA-GPVVLIAPDMQNALRLHDEISQFTDQM 66 +K+G +L + A A A+ + ++ PD + ++ E+ + Sbjct: 32 WKALKSG-GIILDHVAKEAWPFATALAAQALPKRRLWVVCPDARVQEQVQGELRVW-GLP 89 Query: 67 VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPT-------------------------M 101 + + + P D ++ R++ L + Sbjct: 90 ALFFPRLSQMGDAAGLPDPDALAERITALTRFSESMAGKGHGKGKARPGDSGEATGGDEG 149 Query: 102 QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGE 161 Q VL++ ++L + V L + ++ G +L +AL L SAGY V V E G+ Sbjct: 150 QPRVLVICADSLDEEVPALHELEAGKMSLQTGMKLDVEALLQDLGSAGYERVPVVTERGQ 209 Query: 162 YATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLL 212 A RG ++D+F +E P R++FFDDE++SLR FD+ +Q +++ + + LL Sbjct: 210 VARRGGIVDVFSWQAEEPLRMEFFDDELESLRSFDIHTQTSVQRFQRMQLL 260 >UniRef50_A4YQE5 Putative transcription repair coupling factor n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YQE5_BRASO Length = 1091 Score = 790 bits (2041), Expect = 0.0, Method: Composition-based stats. Identities = 332/1127 (29%), Positives = 516/1127 (45%), Gaps = 98/1127 (8%) Query: 24 GAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADWETLPYDSFS 82 G + L+ + VV ++ D A R+ + V+ L ++T+P+D + Sbjct: 35 GLVASHLLRLWQQPSTRGVVFLSSDEARAERIAAVLHAMDPDCGVLVLPRFDTVPFDDAA 94 Query: 83 PHQDIISSRLSTLYQLP-TMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDAL 141 P +++ R L +L + +LI V ++ V P +L +K GQ + + Sbjct: 95 PSRELSGRRAHVLRRLAEHARHPLLISTVEAVLPLVPPQRCWTAASLHLKAGQPIDLEGF 154 Query: 142 RTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR 201 R L GY + + G G +LFP G+ P R++ D I + FD+ Q Sbjct: 155 RNSLAKLGYATDEPPDDPGSVLFHGQTTELFPAGALGPVRINHADGMISDIHFFDLGHQN 214 Query: 202 TLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQ 261 + E + + P E Sbjct: 215 AVVAAETLVIDPMSE--------------------------------------------- 229 Query: 262 PLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLW 321 E L LF+Y + ++V++ + + R A + + Sbjct: 230 RSVGGEALVDLFTYLDGSEIIVDSTVPDHAEMRLAALDESDVDKER-------------- 275 Query: 322 LRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETF 381 F + W LP K + +P A Q +A L + Sbjct: 276 --RKRAFVDRSTWRHALRLATVLPAKG-----HSEPIPVFAQQRSARATLRRFIESARQR 328 Query: 382 DGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRN- 440 ++F+ +E + + + + A D ++ + GF R Sbjct: 329 GARILFTAATERDLQGMERVAGEKAERRKNWAAATRARDGAITSLLIDLDRGFTTGTRRP 388 Query: 441 LALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLE 500 L +I +++LG R +R+ I G ++HL+ G+ G+ + Sbjct: 389 LIVITAAEVLGSRARHLLPMARQAAVAGITIP-----VPGSAIIHLQRGLALLDGLELIS 443 Query: 501 AGGIT-GEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAE 559 A ++ + + L +AND + VP++ L LI YAG L G +W+ +A + Sbjct: 444 APNVSARDMIRLVFANDEAILVPIADLGLIWPYAG-DPSGVKLDDADGRSWAARCLRAED 502 Query: 560 KVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQP 619 ++ A L D R E +Y+ F FP+ TPDQA AI VL D+ Sbjct: 503 EIDRTAVRLSDQIRARRRAEAPRIVAPAVEYERFVARFPYLVTPDQAAAIEDVLKDLGAG 562 Query: 620 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 MDR+VCGDVGFGKTE+A+RAA V +QVA++VPTT+LA QH F RFA + + Sbjct: 563 HPMDRIVCGDVGFGKTEIALRAAAATVFAGRQVALIVPTTVLAAQHVQTFVKRFAPFGIS 622 Query: 680 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK 739 + +SR + + ++A+G + ++IGT L DV+F DLGL+IVDEE FG K Sbjct: 623 VGHLSRLSTTADARSTRRQLADGTLKLVIGTTALAADDVRFADLGLVIVDEEQHFGAADK 682 Query: 740 ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVR 799 R+ A+RA V LT++ATPIPRT+ AM+G+RDLSIIATPP RR V T V + Sbjct: 683 ARLSALRAGVHALTMSATPIPRTMAGAMAGLRDLSIIATPPVRRRPVLTKVEPLLDATLS 742 Query: 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 A+ RE RGGQ + + ++++ ERL+ LVPE IA+ HG+M RE++ M F Sbjct: 743 MALRREHRRGGQSFVICPRIKDLAPMRERLSHLVPELGIAMIHGRMPAREIDAEMMRFVA 802 Query: 860 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 + ++L+ T I+E G+DIP ANTI+I A+HFGL+QLHQLRGRVGR +AYA+LL P Sbjct: 803 GKADILLATNIVENGLDIPRANTILISGAEHFGLSQLHQLRGRVGRGGIRAYAYLLADTP 862 Query: 920 KAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELL 979 AQKRL A+ L GAGF ++ DL++RGAG+LL E+Q+G ++ G +LY ELL Sbjct: 863 ---GDAAQKRLSALQELHFAGAGFQISARDLDLRGAGDLLSEQQAGHVQVFGPALYQELL 919 Query: 980 ENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENEL 1039 A L+ + E E+ + P+ LP D++ D TRL Y R+A A+T ++ Sbjct: 920 SRA---LQGRPHRAAEFWL---PELRIDRPAFLPSDYVQDQVTRLDVYARLAHAETVADI 973 Query: 1040 EEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAW 1099 ++I+ ++ RFG P A L+ AR+R LGI +L+ +G Sbjct: 974 DDIEDDMQLRFGHPPQEASNLIASARIRLDCHALGIARLDVGTEGIAARLRPAATAGTPR 1033 Query: 1100 LIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEENA 1146 P R +RL + + + +F+ L+ +A Sbjct: 1034 --------PGRPR----SRLVYKHKIR-PDRILTAAIRFLAALKRDA 1067 >UniRef50_B2KBP0 DEAD/DEAH box helicase domain protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBP0_ELUMP Length = 1044 Score = 789 bits (2038), Expect = 0.0, Method: Composition-based stats. Identities = 295/865 (34%), Positives = 440/865 (50%), Gaps = 66/865 (7%) Query: 320 LWLRVDELFSELKNWPRVQLKTEHLPTKAANAN-----LGFQKLP---------DLAVQA 365 + L +EL S +KNW P +A + +P ++ A Sbjct: 194 IPLHFEELPSNIKNWAGEAAFIFDNPASDFDATEYDNAVIISPIPHGENYALNANIKFNA 253 Query: 366 QQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYL 425 + L + + G + L EL I Sbjct: 254 NMDLATKEINS-LSLQGYDIAVFCLNRGEEDRLKELFNNHGIL------------NKVSF 300 Query: 426 MIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVH 485 I G+ A I S++L I +R +L G +VH Sbjct: 301 KIADITQGYYSVKDKKAYITSSEILDRNYHTSSLLKNFEIEGAKRVR-FKDLVEGDYIVH 359 Query: 486 LEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKL 545 HG+GRY G+ TL+ + L++ Y +KL+VPV + +Y G + PL L Sbjct: 360 QTHGIGRYRGLETLDKDTAPTDALVIEYRKGSKLFVPVQDFGKVQKYIGVKGKTPPLSHL 419 Query: 546 GGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQ 605 GG AW +++ E + A E+L + A R+A D + F DSFP+ TPDQ Sbjct: 420 GGVAWKEVKRRVKEAAQKDAEEILKMEALRSAANAKPLTGDAQLEAEFADSFPYIQTPDQ 479 Query: 606 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 665 +QAI+ +L D+ + MDR++ GDVGFGKTEVAMRA + KQV VLVPTT+LA QH Sbjct: 480 SQAISEILDDLTRQKTMDRVLVGDVGFGKTEVAMRAVMRTALSSKQVLVLVPTTILAAQH 539 Query: 666 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 725 Y F R A++PV +EM+SRF++ EQ I+ ++ +G +DI++GTH+LL D+ F +LGL Sbjct: 540 YKTFVKRMASFPVSVEMLSRFQTKAEQKIIVEKIRKGTVDIVVGTHRLLSKDISFANLGL 599 Query: 726 LIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785 +I+DEEHRFGV+ KE+IKA A V L L+ATPIPRTLN ++S +R+LS+I TPP R+ Sbjct: 600 VIIDEEHRFGVKQKEKIKAKTAGVHTLMLSATPIPRTLNQSLSSLRNLSLIETPPQGRMP 659 Query: 786 VKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQM 845 VKT V +++ + A+ +EI RGGQVY++YN V++++ E L LVPEARI + HGQM Sbjct: 660 VKTIVTPWNNDLAANAVRQEIGRGGQVYFVYNRVQSMESRLELLKRLVPEARICMAHGQM 719 Query: 846 RERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 905 E LE+ + F++ +++L+ +TIIE+G+DI ANT+IIE A FGLAQL+QLRGR+GR Sbjct: 720 NETALEKTLWAFYNHEYDILLASTIIESGLDISNANTLIIESAQDFGLAQLYQLRGRIGR 779 Query: 906 SHHQAYAWLLTPH---------------------------PKAMTTDAQKRLEAIASLED 938 +AY +L P T A+KRL A+ + Sbjct: 780 GDRKAYCYLFHPDWLFQKPKDNIERENNFEDLKAFLTKKKEADPTETAKKRLSALMEFSE 839 Query: 939 LGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLT 998 LG+GF LA D+EIRGAGELLG Q G +G SLY +++ V LK Sbjct: 840 LGSGFKLALRDMEIRGAGELLGTRQHGFANEVGLSLYCDMVAAEVKKLKGE-----PVEK 894 Query: 999 SQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPAR 1058 + V + + + +P +++PD N RL +YK + ++ + + + +LID G LP+ + Sbjct: 895 KYRATVNVPVAAYIPPEYLPDDNERLRYYKELLNSGELEQKKTL-NKLIDLAGPLPEEVK 953 Query: 1059 TLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDG--- 1115 TL + + +A +L IR +E + FA+ + + L+ K + + Sbjct: 954 TLSKVILISNKAGELNIRHIEATKDFVEFYFAKNFKMPEGAIGELIVKYGNNLKFIPSAK 1013 Query: 1116 --PTRLKFIQDLSERKTRIEWVRQF 1138 R+ + + IE F Sbjct: 1014 GDGFRINLTRGGANYFNEIENTLNF 1038 Score = 134 bits (337), Expect = 3e-29, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 79/207 (38%), Gaps = 13/207 (6%) Query: 11 VKAGEQRLLGELTG-AACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMN 69 + L A A V + V ++ + ++ + +++ ++ Sbjct: 2 TQKNNLAYFYGLPNFGAKARFVFDKFSSLDKNSVFVSNEEEDLDAFESALKTWSEGKIL- 60 Query: 70 LADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIV-PVNTLMQRVCPHSFLHGHAL 128 E D + LY++ + I L + Sbjct: 61 ---TEVYLSDDK-------GMLMHALYKILKSSAPLAITSTYQNLNIPLPGKKDFLSKLK 110 Query: 129 VMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDE 188 +K+ + L R L L S GY+ + GE+A RG+++D+F G +LP RL F + Sbjct: 111 NIKQTEVLKRGDLIDYLHSCGYKREEFTENPGEFAVRGSVVDVFIHGQKLPARLYFAGNI 170 Query: 189 IDSLRVFDVDSQRTLEEVEAINLLPAH 215 ++++ FDVD+Q T E I ++P H Sbjct: 171 VETISSFDVDTQNTKEYKNEITVIPLH 197 >UniRef50_C3XNZ2 Transcription-repair coupling factor n=1 Tax=Helicobacter winghamensis ATCC BAA-430 RepID=C3XNZ2_9HELI Length = 1011 Score = 789 bits (2037), Expect = 0.0, Method: Composition-based stats. Identities = 311/1077 (28%), Positives = 531/1077 (49%), Gaps = 99/1077 (9%) Query: 25 AACATLVA---EIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSF 81 + A L A E R ++++ D ++AL ++++F D+ D Sbjct: 4 SVYAFLKARKGEFKTRFKNGLIILCEDGRSALS-CGDVAKFLGFKTFVFPDFRAAFGDDL 62 Query: 82 SPHQDIISSRLSTLYQLPT-MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDA 140 +Q+ +S+ TL + T +L P+ TL+ + L + +K G L+ + Sbjct: 63 RSYQEELSALFWTLREFYTFKGEKILFSPLYTLLHPLPNAESL--LTMQLKVGDVLNLKS 120 Query: 141 LRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQ 200 + L GY VD V GE + RG ++D+ + PYR+ FDDEI+S+R FD +Q Sbjct: 121 FKENLLYFGYEFVDLVELGGEVSMRGDIIDILTPNEQNPYRITLFDDEIESVRYFDSQTQ 180 Query: 201 R-TLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEY 259 + E ++++ + PA + + E + + + I S L G Sbjct: 181 LCSKENLDSLEIPPAF-LSLNAESYENLKEAILAILQKQS----ILDGGSGDILGFGFWC 235 Query: 260 WQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQS 319 E L + +V E + E F + + ++ + ++ Sbjct: 236 L------ENLGITKDFLQDYPFVVLPNVKELAKEALG------FNEQNANKLQCVFEGET 283 Query: 320 LWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLE 379 L E E +++ + + + V Q PLDA F Sbjct: 284 L-----ESTQEFEDFTYNFNSLQSFLEFHKQKTITILAKSEAQV-RQAGIPLDAPYTFKF 337 Query: 380 TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVR 439 D + LL + + + +++ + G Sbjct: 338 GVDYAI--------------NLLGKESLILSLNTPQKQQKRAKVKILLDELKVG------ 377 Query: 440 NLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTL 499 + + C+ G+ ++G+T Sbjct: 378 DYVVHCDY-----------------------------------------GIAIFSGITQA 396 Query: 500 EAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAE 559 G T +++ L Y + KL +PV +L I RY + L KLG ++++ ++K E Sbjct: 397 NIFGATRDFIALRYLGEDKLLLPVENLDRIDRYIADSGGIPILDKLGKGSFAKLKEKVKE 456 Query: 560 KVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQP 619 K+ +A ++ + A+R +G F +E+ LF + F T DQ QA+N + D+ Sbjct: 457 KLFVIANAIIALAAKRELIDGVVFDVQKEEILLFQNKSGFHYTEDQTQAVNEIFKDLSSG 516 Query: 620 LAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVR 679 MDRL+ GDVGFGKTEVAM A F+A + Q A++VPTTLLA QH++ ++RF + + Sbjct: 517 KVMDRLLSGDVGFGKTEVAMNAMFVAFLSGFQSAMIVPTTLLAYQHFNTLKERFVPFGFK 576 Query: 680 IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK 739 + + R+ S KE+ QIL ++ G+++ ++GTH LL + +FK+L L++VDEEH+FGV+ K Sbjct: 577 LARLDRYVSTKEKKQILRDLKNGELNAVVGTHALLSA--EFKNLALMVVDEEHKFGVKQK 634 Query: 740 ERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVR 799 E+IK + N+ +L+++ATPIPRTLNMA+S ++ LS + TPP+ R A +TFV++ D +++ Sbjct: 635 EKIKDLSQNIHLLSMSATPIPRTLNMALSHIKGLSELKTPPSERQATRTFVKQLDDTLLK 694 Query: 800 EAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHH 859 E I+RE+ RGGQ++Y++N + I++ E + ++P +IAI H Q+ +E E ++ +F Sbjct: 695 EIIMREMRRGGQMFYIHNSIATIRQKKEEILRVLPTLKIAILHSQIPAQEAEDIVLEFAK 754 Query: 860 QRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHP 919 + +L+CT+I+E+GI +P ANTI+++ A++FG+A LHQLRGRVGR + + + +LL Sbjct: 755 GTYQILLCTSIVESGIHLPNANTILVDNANYFGIADLHQLRGRVGRGNKEGFCYLLIEDF 814 Query: 920 KAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELL 979 +++T DA+KRL A+ LG+G ALA HDLEIRG G LLGE QSG ++ IG+SLY+ +L Sbjct: 815 ESITEDAKKRLLALEKNSFLGSGGALAYHDLEIRGGGNLLGEAQSGHIKNIGYSLYLRML 874 Query: 980 ENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENEL 1039 E+A+ AL EV+L + + L + I RL Y+R++ + E + Sbjct: 875 EDAIFALSGNVAQ-----KEANVEVKLSVTAFLNAELIESERLRLEIYRRLSKCQEEKAV 929 Query: 1040 EEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVN 1096 I+ E+ +RFG L R LD+ R++ A+ GI + ++ + ++ Sbjct: 930 FAIEGEIEERFGRLDIYTRQFLDLIRIKIVARNCGIASIMNYQQNISFTSNNGDKIS 986 >UniRef50_Q89AK2 Transcription-repair-coupling factor n=3 Tax=Gammaproteobacteria RepID=MFD_BUCBP Length = 697 Score = 787 bits (2032), Expect = 0.0, Method: Composition-based stats. Identities = 374/696 (53%), Positives = 503/696 (72%) Query: 449 LLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY 508 L+ V + + + I +L++L I QP+VH EHGVGRY G+TT+ I E Sbjct: 2 LIKSLVQKNQVYFTNNSLDEKNICDLSKLKINQPIVHFEHGVGRYQGLTTVTTRNIKTEC 61 Query: 509 LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAEL 568 +++ YA ++KLYVP++ L+LISRY G ++++ PLH+LG D W++ ++KA EK D AA L Sbjct: 62 VVINYAQNSKLYVPITYLYLISRYIGTSKKDIPLHRLGNDLWNKEKKKANEKAYDSAAIL 121 Query: 569 LDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCG 628 L+IY+ R +++GF+FK +Y++FC+ FPF TPDQ AIN+VLSDM + MDRLVCG Sbjct: 122 LNIYSHRISQKGFSFKKHHTKYKIFCERFPFTLTPDQDSAINSVLSDMYKSTPMDRLVCG 181 Query: 629 DVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRS 688 DVGFGKTEVAMRA FLAV N KQVA+LVPTTLLAQQH++NF RF W +IE++SRF+S Sbjct: 182 DVGFGKTEVAMRATFLAVCNQKQVAILVPTTLLAQQHFNNFTLRFKYWSTKIEILSRFQS 241 Query: 689 AKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRAN 748 + +I+ V G + +LIGTHK+L ++K+K+LGLLIVDEEHRFGV HKE+IK + N Sbjct: 242 ETKCNEIINNVNIGNVHVLIGTHKILLKNLKWKNLGLLIVDEEHRFGVHHKEQIKLISNN 301 Query: 749 VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILR 808 +D+LTLTATPIPRTLNMA G+RDLSIIATPP +RL VKTFVRE+ V+R+AILREILR Sbjct: 302 IDVLTLTATPIPRTLNMAFVGIRDLSIIATPPKQRLIVKTFVREFSYTVIRKAILREILR 361 Query: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868 GGQVYY+YN+V I++ L +LVPEA I IGHGQ+R +LE +MNDF+H+RFNVLVC+ Sbjct: 362 GGQVYYIYNNVNKIERKKIELKKLVPEANIRIGHGQLRSTDLESIMNDFYHKRFNVLVCS 421 Query: 869 TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQK 928 TIIETGIDIP NTIIIE A++FGLAQLHQLRGRVGRS HQAYAWLL P K + +DA+K Sbjct: 422 TIIETGIDIPNVNTIIIENANNFGLAQLHQLRGRVGRSQHQAYAWLLVPSLKDIKSDAKK 481 Query: 929 RLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKA 988 R++AI S+E G+ F LA DLEIRG GE+LG QSG + IGFSLYM+LL NAV +K Sbjct: 482 RIDAITSIESFGSCFELANRDLEIRGIGEILGNNQSGHITKIGFSLYMKLLMNAVRNIKN 541 Query: 989 GREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELID 1048 G L D+ + ++EL + +LLPD +I VN RL FY +IA++ +LE+I++ L Sbjct: 542 GYYKPLNDIINTYPKIELNVSNLLPDSYIKKVNHRLFFYNKIATSNNFLDLEKIRLTLCK 601 Query: 1049 RFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQP 1108 FG LP+ L+ IA++R ++K+G++K++ + KGG IEF E + +N L+ +K+ Sbjct: 602 NFGNLPNSGDYLIKIAKIRLISKKIGVKKIKSDVKGGYIEFFEDSKINIQNLLKEFKKEK 661 Query: 1109 QHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEE 1144 ++ D RL+F ++ RI+W+ + + Sbjct: 662 NCWKFDTSNRLRFSKNFKNNSERIDWILNMLININN 697 >UniRef50_Q1J0Y7 Transcription factor CarD n=3 Tax=Deinococcus RepID=Q1J0Y7_DEIGD Length = 1041 Score = 773 bits (1996), Expect = 0.0, Method: Composition-based stats. Identities = 335/1061 (31%), Positives = 496/1061 (46%), Gaps = 127/1061 (11%) Query: 106 LIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATR 165 +++ VNT + H HAL ++ G R+ L +L+ GY E G + R Sbjct: 77 VVLDVNTALDLFPTHP--EDHALTLRVGASYPREDLLNRLERLGYERD---EEPGYF-LR 130 Query: 166 GALLDLF------PMGSELPY--RLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEF 217 G L+L E P R +FF DE+D+LR T E ++ L P ++ Sbjct: 131 GDTLELRLEPGAGVPNGEDPVWLRAEFFGDELDTLRRLLPGE-LTGERIQTFTLEPTADY 189 Query: 218 PTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFP 277 T+ + + G + P F++ L PL Sbjct: 190 LTE------------------VKWDATRLDLLPGRVFLD----APEFYASSLGPLIDTLW 227 Query: 278 ANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRV 337 R + L + ++ LK P Sbjct: 228 P-----------------------------RLREREVTSFGRAPLELTDVDLGLKVLPYY 258 Query: 338 QLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREA 397 + + L A ++ L + A L V E Sbjct: 259 RARLSELERDVAEWRGAGYRVMILVRHDRTAAYLADKLLGTHEIPWRSV-----PRVEEG 313 Query: 398 LGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARR 457 L + ++ +GF + Sbjct: 314 ALGFLRAGG------EGGFAIPEHRTVVLTEDLIYGF---------------------QG 346 Query: 458 RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDA 517 R + + LH+G ++H EHG+G++ G+ T G+T +YL L Y A Sbjct: 347 GSALRGKKLVGKPVTDALGLHVGDYLIHPEHGIGQFQGLETRTVLGVTRDYLNLEYRGGA 406 Query: 518 KLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAA 577 +L VP+ L ++ R+ G ++ L W+RA++KA + +VAA LL YA R Sbjct: 407 RLAVPIEQLPVLRRHPGTTDDPPVLSSFDKKDWARAKEKARKNAEEVAARLLVQYAARQV 466 Query: 578 KEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV 637 G +F E +F FE T DQ A+ + D+ P DRL+ GDVGFGKTEV Sbjct: 467 TPGNSFPPQPEWDAQVERNFKFELTADQKTALKETMRDLEAPHPADRLISGDVGFGKTEV 526 Query: 638 AMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILA 697 A+RAA V + KQVA+LVPTTLLA+QH F +RF + PVR+E +SRF K+ ILA Sbjct: 527 ALRAAHRVVGHGKQVAMLVPTTLLAEQHTSTFVERFKDLPVRVEGLSRFTGDKQAKAILA 586 Query: 698 EVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDI------ 751 ++A GK+DI+IGTH+LL SDV+FKDLGL+IVDEEHRFGV KE+++A+R D+ Sbjct: 587 DLAAGKVDIIIGTHRLLSSDVQFKDLGLIIVDEEHRFGVGQKEKLRALRGLPDVPKDGKL 646 Query: 752 -----------LTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVRE 800 L L+ATPIPRTL M+M G+RD+S I TPP R ++T + +D + VR+ Sbjct: 647 ELPEGVKAVDTLALSATPIPRTLYMSMVGLRDMSSIQTPPKGRKPIQTVLAPFDPVTVRD 706 Query: 801 AILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ 860 AIL EI RGG+V+Y+++ + +I + L LVPEARI + HG+M E ELE +M F Sbjct: 707 AILNEIERGGKVFYIHDRIASIGARSLYLRNLVPEARIGVAHGRMNEEELEEIMLGFEQG 766 Query: 861 RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPK 920 F+VL+ TTI+ETG+DIP ANTI+IERAD GLAQL+QLRGRVGR AYA+L P Sbjct: 767 AFDVLLSTTIVETGLDIPEANTILIERADRLGLAQLYQLRGRVGRRQQTAYAYLFYPP-- 824 Query: 921 AMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLE 980 MT +AQ+RL AIA L+DLG+G LA D+EIRG G +LGEEQ G ++ + +Y E+L Sbjct: 825 RMTENAQRRLWAIADLQDLGSGHLLAEKDMEIRGVGNILGEEQHGHVQAVSIDVYTEMLA 884 Query: 981 NAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFI-PDVNTRLSFYKRIASAKTENEL 1039 AV LK ++L + + L ++ + R++ Y R++ A+T + Sbjct: 885 EAVARLKGE-----PLEAPPTVSIDLPINARLTPEYFDGNEEERIATYGRLSEARTLQAV 939 Query: 1040 EEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAW 1099 ++ +L ++G + +D+A+LR A + I FA K ++ Sbjct: 940 SRVERDLRKKYGPPTPEVQNFIDLAKLRLTAVAKRALSIGETMTHLQITFAYK-SLDYDA 998 Query: 1100 LIGLLQKQPQHYRLDG-PTRLKFIQDLSERKTRIEWVRQFM 1139 L++ P + P +K + + + + + Sbjct: 999 --AGLKRFPHKTEVTTFPPAVKVEKKGLKPDDYARVLIEVL 1037 >UniRef50_D1Y8J9 Transcription-repair-coupling factor n=2 Tax=Synergistaceae RepID=D1Y8J9_9BACT Length = 990 Score = 772 bits (1995), Expect = 0.0, Method: Composition-based stats. Identities = 344/1072 (32%), Positives = 516/1072 (48%), Gaps = 117/1072 (10%) Query: 37 RHAGPVVLIAPDMQNALRLHDEISQF--TDQMVMNLADWETLPYDSFSPHQDIISSRLST 94 R ++++ P Q AL L ++ + ++ ++ D R T Sbjct: 2 RGCEKILVLVPTRQEALALDSDLKVLEVGESRLLEEPPLDS----EKLRSGDSFLRRGHT 57 Query: 95 LYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVD 154 L + G+L+ L L + G+RL RD L + L GYR + Sbjct: 58 LSGWLNAKSGMLVATPGAL----VTPFRFGKTGLTLAAGKRLGRDTLTSWLAENGYRRAE 113 Query: 155 QVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPA 214 V + GE+A RGAL+D FD P Sbjct: 114 LVWQPGEFAVRGALVD-----------------------FFDPS-----------EKAPL 139 Query: 215 HEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFS 274 D+ + Q R + P I + V+ W Sbjct: 140 RVEFFDEDVESIRFFQPRSQRSFQNLPHFIVRSVNHSEDEQRERSWGNY----------- 188 Query: 275 YFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNW 334 TLLV LE S F A E + L P + + + Sbjct: 189 ----GTLLVQPRRLEDSFAAFCELYNALVEEKQ------RLAPDA----FERFLLDTGRL 234 Query: 335 PRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGR 394 PR+++ P + + + F F + Sbjct: 235 PRLRVSA----------------------------PGEGVHQDTLDFGAVPYFRGDLRAA 266 Query: 395 REALGELLA-RIKIAPQRIMRLDEASDRGRYLMIGA-AEHGFVDTVRNLALICESDLLGE 452 R + L KI + G+ G V RN I +++L G Sbjct: 267 RAYVDSHLRAGFKIHIASRNLTGSSFPEQVSFQRGSSLSGGVVVKDRNEIWISDAELFGI 326 Query: 453 RVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLT 512 + + IN + A L Q V+H ++GV + G + GG E ++L Sbjct: 327 -----NEVAEEEINRGMPLDLEASLKKDQWVIHEKYGVCQLEGTSVENFGGQDYETIVLR 381 Query: 513 YANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIY 572 +A++ +L +P + L ++ + G L L W A +KA ++ A LL++Y Sbjct: 382 FADNERLIIPTAELFRLTPWNGNG--VPELDSLKSKRWRSAWKKAEAQIEAEAQGLLNLY 439 Query: 573 AQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGF 632 AQR +G AF D + + F +SFP++ T DQ +AI V DM + MDRL+ GDVG+ Sbjct: 440 AQRELADGRAFGRDGDLLKRFEESFPYKETVDQLRAIRDVKHDMERRWPMDRLIVGDVGY 499 Query: 633 GKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQ 692 GKTEV +RAA V+N Q A++ PTT+LA QHY R P+R+E++SR K+Q Sbjct: 500 GKTEVVLRAAVKTVENGAQAAIIAPTTVLALQHYRTCVARVGELPIRVELLSRMIPKKKQ 559 Query: 693 TQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDIL 752 +IL E A G++DILIGTH+L Q D++FKDLGLLI+DEEHRFGV+HKER+K +D+L Sbjct: 560 KEILDETANGRVDILIGTHRLFQDDIRFKDLGLLIIDEEHRFGVKHKERLKVAHPGLDVL 619 Query: 753 TLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQV 812 +L+ATPIPR+L+MAM G+RD+S+IAT P R V T +D + +A+LRE++RGGQV Sbjct: 620 SLSATPIPRSLSMAMRGIRDISVIATSPRGRGEVFTVTSRWDPSLAHDAVLRELMRGGQV 679 Query: 813 YYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 YYL+N +++I++ A RLA P R A+ HGQM ERELE+ MN+F+ + +LVCTTIIE Sbjct: 680 YYLHNRIDDIEQIAARLANRFPGHRTAVAHGQMGERELEKTMNEFYDGKIEILVCTTIIE 739 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEA 932 +G+D+P ANT+I++ GLAQ+HQ+RGR+GR AYA ++ ++RLEA Sbjct: 740 SGLDVPRANTLIVDDVRRLGLAQMHQIRGRIGRRSENAYALFFYESEES-GGQTRERLEA 798 Query: 933 IASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREP 992 + ++ G+ LA DLEIRGAGE+LG EQ G E IG++LY++ L+ VD L+ Sbjct: 799 LGAVGSQNGGYQLAQRDLEIRGAGEILGTEQHGFKERIGYTLYLKKLKERVDQLRG---- 854 Query: 993 SLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGL 1052 + + V+L MP ++P D++P + R+ Y+R+ S + E EE++ EL+DR+G Sbjct: 855 ----IEIKPALVDLAMPLVIPVDYVPQTDLRIGLYRRLLSPLSAQEYEEMQAELLDRYGP 910 Query: 1053 LPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIE--FAEKNHVNPAWLIG 1102 LP+ + LLD A +R + LGI +L +E +E E P W++ Sbjct: 911 LPEQVQGLLDAALVRGEGGALGIERLRVSEAFVALEGPLGEDIFSPPRWIVK 962 >UniRef50_Q8D3A2 Mfd protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D3A2_WIGBR Length = 685 Score = 771 bits (1991), Expect = 0.0, Method: Composition-based stats. Identities = 321/677 (47%), Positives = 477/677 (70%), Gaps = 3/677 (0%) Query: 469 TLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHL 528 + E G ++H++HG+G+Y G +E GI EY+++ YA + LY+P +SLHL Sbjct: 10 KNFSSDIEFISGDFIIHIDHGIGKYIGTKFIETSGIKNEYMVIQYAENDILYLPFTSLHL 69 Query: 529 ISRY--AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 IS+Y L KLG D W + +K +K+ D+A E+LD ++R +K+GF+F+ Sbjct: 70 ISKYKKNNYDSNLIILDKLGSDTWKKYSKKIIKKINDIAVEILDNASERLSKKGFSFELK 129 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 +Y+LFC+ F+ T DQ +AI V+ DM + M+RL+CGDVGFGKTE+AMRAAF+A+ Sbjct: 130 FNKYKLFCNECNFDLTQDQNKAILEVIDDMKKSSVMNRLICGDVGFGKTEIAMRAAFIAI 189 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 N KQV++L PTTLL+QQH+DNF+ RF WP++I ++SRF + KEQ +++ + G+IDI Sbjct: 190 QNKKQVSLLTPTTLLSQQHFDNFKLRFKKWPIKISILSRFLNKKEQNKVIKMILIGEIDI 249 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 LIGTH++LQ D+ +KDLGLLI+DEEHRFGV KE IK +R VD+L+LTATPIPRTLNMA Sbjct: 250 LIGTHRILQKDIIWKDLGLLIIDEEHRFGVSQKECIKTVRTGVDVLSLTATPIPRTLNMA 309 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 M+G+RDLSII+TPP RL VKTF+ EY+ ++++AI E+ R GQ+YYL+N++ I + + Sbjct: 310 MNGLRDLSIISTPPKYRLPVKTFIYEYNKDIIKKAIKNELSRKGQIYYLHNNISTINETS 369 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 + L ++ P+ RI I H +M + L++ M DF +F++LVCT+IIETGIDI ANTIIIE Sbjct: 370 KILKKIAPKVRIKISHSKMCKNLLKKTMQDFKENKFDMLVCTSIIETGIDIANANTIIIE 429 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 +A+ FGLAQL+QLRGRVGRS QAYA+L T ++ +++KRLEAI+S+ LG+GF+L+ Sbjct: 430 KANQFGLAQLNQLRGRVGRSFRQAYAYLFTSKSNSLNENSKKRLEAISSINKLGSGFSLS 489 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVEL 1006 +DLEIRG+GELLG +QSG + +IG SLY +LL+ ++ +K+G+E SLE + TEV L Sbjct: 490 INDLEIRGSGELLGSKQSGKINSIGISLYNKLLKKSIKLIKSGKELSLETIKENFTEVNL 549 Query: 1007 RMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARL 1066 +P+ +PD +IPDV+ RL +YK+ S +T++E+ +K + +FG LP L++IA + Sbjct: 550 NIPAFIPDSYIPDVSIRLFYYKKFFS-ETKSEINNLKNIITSKFGKLPKSVCYLIEIAYI 608 Query: 1067 RQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLS 1126 RQ+A +GI+ + N KGG +EF + N +N I LL+ P+ Y++ T+L+ Sbjct: 609 RQKANFIGIKIININFKGGFVEFNKNNSINYESFIRLLKNYPKIYKIISQTKLRIKYLTK 668 Query: 1127 ERKTRIEWVRQFMRELE 1143 + +I++++ F+ ++ Sbjct: 669 SHEEKIDYIKNFLNYIK 685 >UniRef50_C1XT24 Transcription-repair coupling factor (Superfamily II helicase) n=2 Tax=Meiothermus RepID=C1XT24_9DEIN Length = 988 Score = 768 bits (1983), Expect = 0.0, Method: Composition-based stats. Identities = 306/842 (36%), Positives = 448/842 (53%), Gaps = 27/842 (3%) Query: 304 ENRGVDPMRPLLPPQSLWLR-----VDELFSELKNWPRVQLKTEHLPTKAANANLGFQKL 358 + D + P ++L EL+ L+ V L Sbjct: 164 KAEAWDSHKIRHFPGPVFLDMPSLAPGELWQHLEGRDLVTFGL----GGPELPKLDLGYQ 219 Query: 359 PDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEA 418 +A+ ++ +R++ E G V+F ++GR L L I + E Sbjct: 220 ALPPYRARIAQFVEEVRRWTEQDYGVVLFYKHAKGRA-YLESKLQGINLRK---SGRFEC 275 Query: 419 SDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELH 478 L+ G E ++D + E L + R + + L Sbjct: 276 KPGWITLVPGGFEGAYLDPEAKAVCLTEPHLYAFGSGQAGPSRRIVTGETG---DPSALA 332 Query: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEE 538 G ++H EHG+G++ G+ E G+ +YL+L YA +A+LY+PV L L+ R+ G ++ Sbjct: 333 PGDYLIHPEHGIGQFVGLEPREILGVKRDYLILQYAGEARLYLPVEQLPLLKRHPGTTDD 392 Query: 539 NAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFP 598 L LG W +AR+KA + ++AA +L ++A+R A G A+ E L +FP Sbjct: 393 PPRLSSLGKGEWKKAREKAQKDAEELAARMLVLHAKRQATPGRAWAPIPEWDSLIEKNFP 452 Query: 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 658 + TPDQ +++ D+ P MDRL+ GDVGFGKTEVA+RAA V + QVA+LVPT Sbjct: 453 YALTPDQEKSLEDTFRDLEAPRPMDRLISGDVGFGKTEVALRAAHRVVGHGAQVALLVPT 512 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 TLLA+QH F+ RF PVR+E +SRF S ++ +IL ++ G +DI+IGTH+LL D+ Sbjct: 513 TLLAEQHTQTFKSRFEGLPVRVEGLSRFTSELDEQRILRDLEAGAVDIVIGTHRLLSGDL 572 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 +FKDLGLLI+DEEHRFGV KERI+ + VD L L+ATPIPRTL A+ G++DLS I T Sbjct: 573 RFKDLGLLIIDEEHRFGVAQKERIREIAETVDTLYLSATPIPRTLYSALVGLKDLSSIQT 632 Query: 779 PPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARI 838 PP R ++T + YD +VREAIL E+ RGG+V+Y+++ V IQ L + PEARI Sbjct: 633 PPPGRKPIQTVLAPYDPSLVREAILSEMERGGKVFYVHDRVATIQARQRYLENIAPEARI 692 Query: 839 AIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQ 898 + HGQM E ++E VM F F+VL+ TTIIE+G+DIP ANTI+IERAD GLA L+Q Sbjct: 693 GVVHGQMPEGDIEEVMLAFAEGAFDVLLATTIIESGLDIPEANTIVIERADRLGLAALYQ 752 Query: 899 LRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGEL 958 LRGRVGR +AYA+ P +T A++RL AIA L DLG+G LA D+EIRG G L Sbjct: 753 LRGRVGRRDQEAYAYFFHPP--RLTEAAERRLSAIADLSDLGSGHLLAEKDMEIRGVGNL 810 Query: 959 LGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIP 1018 LG EQ G + + +Y ELL A+ LK + + ++L + + L ++IP Sbjct: 811 LGPEQHGHIRAVSLEIYTELLAEAIAKLKGEK-----TEPEKHVTLDLAVSARLTPEYIP 865 Query: 1019 DVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKL 1078 R +Y R+A AK ++ I EL +R+G P L + RLR A+ G+ + Sbjct: 866 SAAARSRYYGRLAEAKRLAQVARIAGELRERYGEPPVEVENFLALTRLRLLAEAKGVVSI 925 Query: 1079 EGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLD-GPTRLKFIQDLSERKTRIEWVRQ 1137 + + F E+ ++ L+ P L P + + ++ + V Sbjct: 926 TEDLTWLQLVF-ERWPLDYDS--KALRALPYRIELTQYPPGFRIAKKGLSQEQYSQAVSD 982 Query: 1138 FM 1139 + Sbjct: 983 LL 984 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 61/175 (34%), Gaps = 40/175 (22%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPY 78 L L A A + + P +L+ P+ + + + F V E Sbjct: 13 LPGLPQVAR----ARLFAQTEPPAILLVPEHRL--DFYRNLEPF-GVGVYVNPGLEAW-- 63 Query: 79 DSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSR 138 + G ++ +Q LV++ G+R R Sbjct: 64 ----------------------GEAGWVVFDYREALQ--AFPQDPSAWRLVLEVGRRYLR 99 Query: 139 DALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLR 193 + L +L GY + E G +A RG ++++ RL+FF DE+++++ Sbjct: 100 EDLLERLTRMGYLRESEEGEAG-FAVRGEIVEI------GEVRLEFFGDELEAIK 147 >UniRef50_C3XFZ1 Transcription-repair coupling factor n=2 Tax=Campylobacterales RepID=C3XFZ1_9HELI Length = 1042 Score = 756 bits (1952), Expect = 0.0, Method: Composition-based stats. Identities = 298/1155 (25%), Positives = 506/1155 (43%), Gaps = 159/1155 (13%) Query: 18 LLGELTGAACATLVAEIAERHAGPVVLIAPDMQ---NALRLHDEISQFT----------D 64 +L + ++ + + P +LI + L ++ + Sbjct: 17 ILTHVKISSLNQTLTNHTKNKNTPQILICSSEEILLAKEALCATLNLISMQKTKKEVKES 76 Query: 65 QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ-RGVLIVPVNTLMQRVCPHSFL 123 + + L D P+DS + + L + +LI P +TLM + L Sbjct: 77 TLPIVLPDIRLSPFDSTQSFYEEFHELFAKLALWYENDCKQILISPPHTLMAFMPSKELL 136 Query: 124 HGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLD 183 H+ ++K + + +L GY HV+ V GE++ RG ++D+F E P R+ Sbjct: 137 --HSFCVRKSENIVVKDFIAKLIHYGYEHVEIVEMQGEFSHRGDIIDIFIPSFEFPVRIS 194 Query: 184 FFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEH 243 FD EI+ + F+ ++ Sbjct: 195 LFDTEIEEINFFNHET-------------------------------------------- 210 Query: 244 IYQQVSKGTLPAGIEYWQPLF-FSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLAR 302 Q+S+ + ++ + +F E L ++ + + Sbjct: 211 ---QLSQNEMIENLKIYPAIFSLDESQHTLLE-----------SRIKELDNTLECSINSL 256 Query: 303 -FENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPD- 360 F L S L L N V +P N F L D Sbjct: 257 GFWFLKDIGGLDFLKTYSHVFTPKALSEYLLNLEFV------MPEVLPETNTEFYILQDS 310 Query: 361 LAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASD 420 + + + L + L+ + +L + I + Sbjct: 311 INFRDLEPLKLSQIHNTLKLNSNKDITIFSPTNA------MLKSYNLESLSIKTKQIITP 364 Query: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 I ++ L + + + +R + L L +G Sbjct: 365 FYLN-------------------ITSNEKLFLSLQKPQIMRKRKVK-----LELDALKVG 400 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 VVH E+G+G + + + G +++ + YAND +L +PV +L++I +Y + Sbjct: 401 AYVVHSEYGIGIFEAIKQVSIMGGLKDFISIIYANDDRLLLPVENLNMIEQY-SAYDSVV 459 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY----QLFCDS 596 + KLG ++ + + EK+ +A E++ + AQR +G + + F S Sbjct: 460 RIDKLGKSSFLKLKDSIKEKLFAIANEIIRLQAQRTLAKGVKIELETPDQITAFNTFESS 519 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 F T DQ AI L D+ + MDRL+ GDVGFGKTEVAM F + N VLV Sbjct: 520 RGFTLTQDQTHAIQESLKDLKSGMIMDRLLNGDVGFGKTEVAMSLCFASALNDFNSIVLV 579 Query: 657 PTTLLAQQHYDNFRDRFANWPVR------IEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 PTTLL QH+++F++R N + I I RF +A ++ I + I I++GT Sbjct: 580 PTTLLCNQHFESFKERLHNTKLPNGKILYIAKIDRFTTATQKRAIQENFKD-NIQIIVGT 638 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H L +++ ++LGL+++DEEH+FGV+ KE +K IL+++ATPIPRTLNMA S + Sbjct: 639 HSLF--NLEIENLGLMVIDEEHKFGVKQKELLKQKSLTTHILSMSATPIPRTLNMAYSKL 696 Query: 771 RDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLA 830 + +S + TPP + KTFV+ +++E ILRE+ RGGQV+Y++N++ I L Sbjct: 697 KSISELKTPPFFKQESKTFVKVKQDSLIKEVILRELRRGGQVFYIFNNIAKITTIQSYLH 756 Query: 831 ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADH 890 +L+P+ RI I H Q+ ++ E+ M F + +++L+CT+I+E+GI +P ANTIII+ A + Sbjct: 757 DLLPQLRILILHSQINPKDTEKGMLAFLKKEYDLLLCTSIVESGIHLPNANTIIIDDAHN 816 Query: 891 FGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDL 950 FG+A LHQLRGRVGR H + +LLT + +T DA KRL ++ LG+G ALA HDL Sbjct: 817 FGIADLHQLRGRVGRGKHVGFCYLLT--NENITQDAAKRLLSLEKNSYLGSGAALAYHDL 874 Query: 951 EIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS 1010 EIRG G LLGE QSG ++ +GF +Y+ +LE+ + +L + Q+ +++L + + Sbjct: 875 EIRGGGNLLGEAQSGHIKQVGFGMYVRMLEDTLQSL------LQNEQQEQKVDIKLSVSA 928 Query: 1011 LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQA 1070 L + + RL Y+R++ K+E E+ EI+ E+ RFG L + L+I ++ A Sbjct: 929 FLNESLVSSERMRLDLYRRLSQVKSEFEVREIEGEIEQRFGRLDIYSLQFLEIIIIKTLA 988 Query: 1071 QKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKT 1130 +LGI+ + + + R+ + Sbjct: 989 LQLGIKAISNAGYNISLIGHDDT------------------------RITLQSPTKDDDD 1024 Query: 1131 RIEWVRQFMRELEEN 1145 + ++ ++EL Sbjct: 1025 ILNTIKTKLKELLGM 1039 >UniRef50_C3WG56 Transcription-repair coupling factor n=6 Tax=Fusobacterium RepID=C3WG56_FUSMR Length = 988 Score = 753 bits (1945), Expect = 0.0, Method: Composition-based stats. Identities = 320/931 (34%), Positives = 514/931 (55%), Gaps = 43/931 (4%) Query: 201 RTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYW 260 L+ E +L + E + +E R + D + + + + Sbjct: 69 EILKSEEDFIILLSLEAILREYFLEGKRYEIE--IGKSLDIKELENSLEESGYNKEYMVE 126 Query: 261 QPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSL 320 + +S + FP N+ E + + R ++ + + + Sbjct: 127 ERNQYSMR-GDILDIFPKNS------KYPVRIEFSFNNEVERIAYFDIETQKSVEKKNQV 179 Query: 321 WLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKA--PLDALRKFL 378 ++ ++ E ++ L N +L KL ++ ++ K FL Sbjct: 180 YMYINNNIEEKNSFLDFLNNRNDLKIFIENIDLLNYKLEEILSNSEIKEKSIKGIYNNFL 239 Query: 379 ETFDGPVV--FSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIG-------- 428 + + F+ E E++ + K Q+I + + R R + G Sbjct: 240 KIAKSVEINKFTHEELQNFESIEYVKKIGKDPLQKIKIVSDEEKRYREIFEGYNFEYEKY 299 Query: 429 AAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEH 488 G+ NL ++ + +L G RV R ++D +N+ E+ G ++H + Sbjct: 300 PLFEGY--KEENLLVLTDRELKGIRVRREKKDKGF-----QRYKNITEIQEGNYIIHENY 352 Query: 489 GVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGD 548 GVG Y G+ ++ +YL + YA + KL+VP+ + I +Y E ++ LG Sbjct: 353 GVGLYLGIEIIDG----HDYLKIKYAGEDKLFVPIEGIGKIGKYISIDGEIPEIYNLGRK 408 Query: 549 AWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQA 608 + + R+K AE++ A E+++I A+R + G++F D + F +SFP++ TP Q QA Sbjct: 409 GFRKKREKIAEEMLQFAKEIVEIQARRDLEAGYSFAPDNLWQEEFEESFPYKETPSQLQA 468 Query: 609 INAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDN 668 I V DM MDR+VCGDVG+GKTEVA+RAAF A KQV ++VPTT+LAQQHY+ Sbjct: 469 IEDVKRDMESSRIMDRVVCGDVGYGKTEVAIRAAFKAAIEGKQVVLMVPTTVLAQQHYER 528 Query: 669 FRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIV 728 F +R N+P+ IE++SR ++KEQTQ L ++ EG +DI+IGTH++L DV+FKDL L+I+ Sbjct: 529 FTERMKNYPINIELLSRLLTSKEQTQTLKKIKEGGVDIVIGTHRILSEDVEFKDLRLVII 588 Query: 729 DEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT 788 DEE +FGV+ KE++K +R+ VD+LTLTATPIPRTLN+A+ G+RDLS+I TPP R + T Sbjct: 589 DEEQKFGVKAKEKLKKLRSKVDVLTLTATPIPRTLNLALLGIRDLSVIDTPPEGRKPINT 648 Query: 789 FVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA-RIAIGHGQMRE 847 F E +RE I++EI R GQV+Y++N V+ I+K + L +++PE +I HGQM Sbjct: 649 FFVEGLEKNIREIIMKEIAREGQVFYIFNSVKGIEKKTQELRKILPEYLKIDFVHGQMTP 708 Query: 848 RELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 R+++ + +F + ++LV TTIIE GIDI ANT+II+RAD GL+Q++QLRGRVGR + Sbjct: 709 RDIKEKIKEFENGEIDILVATTIIENGIDIENANTMIIDRADKLGLSQIYQLRGRVGRGN 768 Query: 908 HQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL-GAGFALATHDLEIRGAGELLGEEQSGS 966 Q+Y +LLT + T A++R E+I +LE++ G G L+ D+ IRGAGE+LGE+Q G Sbjct: 769 RQSYCYLLT--KEYQTKKAKEREESIKNLEEIDGGGLQLSMEDMRIRGAGEILGEKQHGI 826 Query: 967 METIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSF 1026 +ET G++LYM++L+ +D +K E ++D+ E+++ P+ +P+++I + + ++ Sbjct: 827 LETFGYTLYMKMLQEEIDKIKGRFEEDIDDI-----EIKVNYPAFIPNEYI-EKDEKIKV 880 Query: 1027 YKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR-KLEGNEKGG 1085 Y+RI K+ ELE IK ELIDRFG +P A+ L+ +A+KLGI+ LE K Sbjct: 881 YRRITEVKSIIELENIKDELIDRFGKMPVEAQGFFRYIGLKFRAKKLGIKNALEIKGKVE 940 Query: 1086 VIEFAEKNHVNPAWLIGLLQKQPQHYRLDGP 1116 I + VN L+ L+Q+ Y+ Sbjct: 941 SIIKFNSDKVNFDVLLKLIQEGLIKYQKKDD 971 Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 97/218 (44%), Gaps = 15/218 (6%) Query: 34 IAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLS 93 + + G ++ + +N ++ +S ++ L ++ ++ Sbjct: 15 LLKEIGGKILYLCSSNRNIEDYYNVLSDIYGGNILKL--------ENTQSKDELEKDNYD 66 Query: 94 TLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHV 153 L L + + ++++ + +++ FL G ++ G+ L L L+ +GY Sbjct: 67 LLEILKSEEDFIILLSLEAILREY----FLEGKRYEIEIGKSLDIKELENSLEESGYNKE 122 Query: 154 DQVMEHGEYATRGALLDLFPMGSELPYRLDF-FDDEIDSLRVFDVDSQRTLEEVEAINLL 212 V E +Y+ RG +LD+FP S+ P R++F F++E++ + FD+++Q+++E+ + + Sbjct: 123 YMVEERNQYSMRGDILDIFPKNSKYPVRIEFSFNNEVERIAYFDIETQKSVEKKNQVYMY 182 Query: 213 PAHEFPTDKAAIELF--RSQWRDTFEVKRDPEHIYQQV 248 + + ++ R+ + E + +++ Sbjct: 183 INNNIEEKNSFLDFLNNRNDLKIFIENIDLLNYKLEEI 220 >UniRef50_D1B3F9 Transcription-repair coupling factor n=14 Tax=Campylobacterales RepID=D1B3F9_SULD5 Length = 989 Score = 745 bits (1924), Expect = 0.0, Method: Composition-based stats. Identities = 291/1042 (27%), Positives = 491/1042 (47%), Gaps = 108/1042 (10%) Query: 55 LHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTM--QRGVLIVPVNT 112 L E++ + + L D D + + L LY + +LI P+ T Sbjct: 29 LASEVALYCGKKSYVLPDLRANYGDDLLSFHEEMVELLRVLYAFYHDASSKKILISPLRT 88 Query: 113 LMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLF 172 L+ + L + G RL + R Q+ GY VD V GE + R Sbjct: 89 LLTPLPKVELF--STLTLAFGMRLHLERFREQMFYWGYLAVDVVQGKGEISIR------- 139 Query: 173 PMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWR 232 D ID P ++ I LF + Sbjct: 140 -------------GDIID-------------------IFPPNSDYAL---RISLFDDEVE 164 Query: 233 DTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSA 292 F E L + L Sbjct: 165 S---------------------------IRFFECESQKSLKDELEE---WLLFPALFALD 194 Query: 293 ERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN 352 E A R E D + LW+ + + + L + + A Sbjct: 195 ESRYALMQRRIETLKSDSFTKDIHSLGLWVLGESGDVYTERFKT-YLSMDAVDECNEIAL 253 Query: 353 LGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRI 412 + + L + P + + + + + + LLA+ ++ + + Sbjct: 254 FDEEGVKKLRLLPSLSTPKA--YREIAPSNIKTFIELHQKKKI----TLLAKNEVLLRMV 307 Query: 413 MRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIR 472 + A ++ + R + ++ +++ + R+ + Sbjct: 308 D-------------LDALHVKWIQSERIVNIMSADEVILSLNKPLSKQKRKRVRIV---- 350 Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 L EL G VVH +G+G + G+T + G T +++++ Y D KL +PV +LH+I RY Sbjct: 351 -LDELKNGDYVVHENYGIGIFKGLTQVSVLGATKDFVLIEYLGDDKLLLPVENLHVIDRY 409 Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 G + + +LG ++ + + K E++ ++A+E++ I A+R EG + E+ Q Sbjct: 410 IGESGGLVSVDRLGKGSFQKLKAKTKERLLEIASEIIAIAAKREMVEGLNIAIENEELQA 469 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F F T DQ + I+ +L D MDRL+ GDVGFGKTEVAM A F V Q Sbjct: 470 FQADAGFMYTEDQKRVIDEILVDFKSGKMMDRLLSGDVGFGKTEVAMNAIFATVQKGFQA 529 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 ++ PTTLL QH+ + RFA + +++ + RF +A ++ IL E+ G + + +GTH Sbjct: 530 LLIAPTTLLCAQHFKSLSHRFAKYNIKVAQLDRFTTAAQKQLILKELKSGALQVCVGTHS 589 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 L DV+ + L++VDEEH+FGV+ KE++K R NV IL+++ATPIPR+LNMA+S ++ Sbjct: 590 LF--DVELFNPALVVVDEEHKFGVKQKEKLKNFRENVHILSMSATPIPRSLNMALSSIKQ 647 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 832 S + TPP+ R V+TFV+EYD V++EAILRE+ RGGQ+++++N + I+ + L + Sbjct: 648 YSQLLTPPSDREDVRTFVKEYDEKVIKEAILREMRRGGQIFFVHNRIATIEAKRKELLSM 707 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 +P RI H ++ E+ M F + +++L+ T+IIE+GI IP NTI+I+ ADHFG Sbjct: 708 MPNLRILTLHSEISASVTEKEMLRFEEKAYDLLLSTSIIESGIHIPNVNTIMIDAADHFG 767 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 +A LHQLRGRVGRS Q + + L ++++ A+KRL A+ S LG+G LA HDLEI Sbjct: 768 MADLHQLRGRVGRSKRQGFCYFLVKEKESLSESAKKRLIALESNSYLGSGSILAYHDLEI 827 Query: 953 RGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLL 1012 RG G L+GE QSG ++ IG++LY+ +LE+A++AL + S++ +++L + + + Sbjct: 828 RGGGNLVGEAQSGHLKNIGYALYLRMLEDAINALMGKT-----PVASREVDMKLSISAFI 882 Query: 1013 PDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 D +I + RL Y+R++ + +E+ EI+ E++DRFG + P + L + ++ A + Sbjct: 883 SDSYIAEDRVRLELYRRLSRCGSIHEVLEIEEEMLDRFGKMDVPTKQFLQLIEIKILATQ 942 Query: 1073 LGIRKLEGNEKGGVIEFAEKNH 1094 I + + +++ ++ Sbjct: 943 HHIVLVSNYGQMITLKYEDEKK 964 >UniRef50_A9BHZ6 DEAD/DEAH box helicase domain protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHZ6_PETMO Length = 974 Score = 739 bits (1908), Expect = 0.0, Method: Composition-based stats. Identities = 250/705 (35%), Positives = 411/705 (58%), Gaps = 9/705 (1%) Query: 432 HGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVG 491 G + N E L E++ + + + +L+ G VVH ++G+G Sbjct: 276 SGHNLEILNKIKYEEVKLTLEKIYFIKSKKEDKRLEYIPLLDWEDLNDGDLVVHEDYGIG 335 Query: 492 RYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWS 551 Y G+ +E E++ L Y++++++YVPV L +S+Y G E+ + L +W Sbjct: 336 IYHGVNKVETLLGLREFVTLEYSDNSRVYVPVGRLDKLSKYIG-DPESVKISSLNSKSWK 394 Query: 552 RARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINA 611 +QK E+++ EL IYA R + G D E + F ++FP+ TPDQ ++I Sbjct: 395 NTKQKVKEEIKQKIEELQKIYALRENQRGIQLFGDPELEEKFKETFPYVETPDQEKSIKE 454 Query: 612 VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRD 671 V+ D+ MDRL+ GD GFGKTEVAMRAAF V ++ QV +L PTT+LA+QHY+NF+ Sbjct: 455 VMRDLESERPMDRLLSGDSGFGKTEVAMRAAFRTVVSNYQVLLLAPTTILAKQHYENFKQ 514 Query: 672 RFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEE 731 R ++ ++I +++R ++ KE+ + + +G++DI+IGTH LL ++ K+LGL+IVDEE Sbjct: 515 RMDSFGIKIALVTRHKTQKEKKDLFESIGKGQVDIVIGTHALLSDLLQVKNLGLVIVDEE 574 Query: 732 HRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVR 791 RFGV KE+ K + V+ L ++ATPIPRTL M++SG+RD+S I+TPP RL ++TF+ Sbjct: 575 QRFGVLQKEKFKKLSDGVNFLMMSATPIPRTLYMSISGLRDISTISTPPVGRLPIQTFIG 634 Query: 792 EYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELE 851 +Y +VR AILRE RGGQV Y++N V+ + + ++L L+PE +IA+ HG ++E Sbjct: 635 KYSDKLVRTAILREKSRGGQVIYIHNRVQELNELHKKLRTLIPEIKIAMVHGGTPKKEFI 694 Query: 852 RVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAY 911 + +ND + ++L+ TTIIE GIDIP NT+I++ + +G++QL+Q++GRVGRS+ +A+ Sbjct: 695 KSINDLYDGNIDLLLSTTIIENGIDIPNVNTLILDDPERYGISQLYQIKGRVGRSNRRAF 754 Query: 912 AWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIG 971 + L K +T +KRLEAI + G+G LA DLEIRG G++LG EQ G + IG Sbjct: 755 VYFLF--KKEVTPQTKKRLEAIKQYNEPGSGLKLALRDLEIRGYGDILGIEQKGHINAIG 812 Query: 972 FSLYMELLENAVDALKAGREPSLEDLTSQQTEVE-LRMPSLLPDDFIPDVNTRLSFYKRI 1030 + LY E+L + ++ TE++ ++ ++P+ +I + R+ Y+RI Sbjct: 813 YHLYHEMLNKILFEY-GIKKEEEIQKPQTYTEIKGIKGSLVIPESYISNSIERMRIYRRI 871 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFA 1090 + AKT +++E+I+ E+ D++G P+ L A ++ +A GI+++E + +F Sbjct: 872 SVAKTVDDVEDIRSEIRDKYGKFPEEVERLFQYALIKVKANMEGIKEIEIGDTYISFKFE 931 Query: 1091 EKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWV 1135 + +I K + T+ + +E V Sbjct: 932 N----DVNPVIEKYNKYSRKITFYPETKELISYGPKDHMKYMEKV 972 Score = 185 bits (470), Expect = 8e-45, Method: Composition-based stats. Identities = 73/488 (14%), Positives = 167/488 (34%), Gaps = 53/488 (10%) Query: 35 AERHAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLADWETLPYDSFSPHQDIISSRLS 93 ++ +L+ PD + F D+ V D++ P+++ +I + R+ Sbjct: 13 LKKVNKQKILVLPDGY--------LQDFDDEEEVFIYPDFDIFPFENLDISPNIKAKRMK 64 Query: 94 TLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHV 153 TL+ L T + ++ ++L++ P + +K G D GY Sbjct: 65 TLHALLTKENVTVLTTFSSLIRYTLPKNEFVSK--KIKVGDTFDLDH--NVPYHLGYNLS 120 Query: 154 DQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLP 213 ++V GEY+ RG + D F E P R++ +D+ ID + FD SQR++E ++ + ++P Sbjct: 121 EEVTSPGEYSKRGFVRDFFIPIYEQPVRIELWDEVIDRISFFDSYSQRSIENLKEVEIIP 180 Query: 214 AHEFPTDKAAIELFRSQWRDTFEVKRDPEHI-YQQVSKGTLPAGIEYWQPLFFSEPLPPL 272 E +E + + + + E + Q + P F + + Sbjct: 181 GSEIMKFDHNLEFYEERLKKYLNGTNEEEFLTLDQFNT----------LPGIFYKDKNTI 230 Query: 273 FSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPL--------------LPPQ 318 FSY + + E + +E + R + + + Sbjct: 231 FSYLNEDGDIYLINK-EEIINSYSEKEKENYEMCDTELKRKIYKMFSGHNLEILNKIKYE 289 Query: 319 SLWLRVDELFSELKNWPRVQLKTEHL--PTKAANANLGFQKLPDLAVQA--QQKAPLDAL 374 + L +++++ +L+ L + +L + + + + L L Sbjct: 290 EVKLTLEKIYFIKSKKEDKRLEYIPLLDWEDLNDGDLVVHEDYGIGIYHGVNKVETLLGL 349 Query: 375 RKFLETFDGPVVFSVESEGRREALGELLAR------IKIAPQRIMRLDEASDRGRYLMIG 428 R+F+ GR + L + + + + + I Sbjct: 350 REFVTLEYSDNSRVYVPVGRLDKLSKYIGDPESVKISSLNSKSWKNTKQKVKEEIKQKIE 409 Query: 429 AAEHGFVDTV--RNLALICESDLLGERVARRRQDSR--RTINPDTLIRNLAELHIGQPVV 484 + + R + L + +L + + + ++R+L ++ Sbjct: 410 ELQKIYALRENQRGIQLFGDPELEEKFKETFPYVETPDQEKSIKEVMRDLESERPMDRLL 469 Query: 485 HLEHGVGR 492 + G G+ Sbjct: 470 SGDSGFGK 477 >UniRef50_C5CIP9 Transcription-repair coupling factor n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CIP9_KOSOT Length = 1018 Score = 737 bits (1903), Expect = 0.0, Method: Composition-based stats. Identities = 281/700 (40%), Positives = 433/700 (61%), Gaps = 19/700 (2%) Query: 452 ERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLML 511 + + + P + + +EL G VVH+E+G+G++ G+ + T EYL + Sbjct: 329 KATRKNLPRKQEKYVPKAPVFDWSELEEGDFVVHIEYGIGKFLGIRKINGVLGTREYLTI 388 Query: 512 TYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDI 571 Y +K+YVP+ L + +Y G + N L+ L G+AW + +++ ++V++ EL + Sbjct: 389 EYREGSKIYVPIERLDRVHKYVGDTD-NIQLNSLRGNAWKKRKKRVEKEVKERIKELALL 447 Query: 572 YAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVG 631 Y R G + K D F SFP T DQA+AI VL D+ MDRLV GD G Sbjct: 448 YGTREHLRGLSLKGDPTLEDAFKRSFPHLETEDQAKAIEEVLDDLADEKPMDRLVSGDAG 507 Query: 632 FGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKE 691 +GKTEVA+RAAF AV + KQV++LVPTT+LA+QHY+ F++R + V ++++ R+R+ KE Sbjct: 508 YGKTEVALRAAFRAVVSGKQVSILVPTTVLARQHYETFKNRLEPFGVNVDILDRYRTPKE 567 Query: 692 QTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDI 751 + +IL E+ GKID++IGTH LL DV+F DLGL+I+DEE FGV KE +K +R V++ Sbjct: 568 RQKILRELKNGKIDVIIGTHSLLSKDVRFADLGLVIIDEEQLFGVMQKEHLKKLRLEVNV 627 Query: 752 LTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQ 811 LT++ATPIPRTL MA+SG+R+LS+IATPP R +T+V + ++R A+LREI RGGQ Sbjct: 628 LTMSATPIPRTLYMALSGLRELSMIATPPIGRTMPETYVGPVNDRLIRTAVLREINRGGQ 687 Query: 812 VYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTII 871 V Y++N V + K ++ L+PE I + HGQM +R E+ + DF+ + +L+CTTII Sbjct: 688 VIYVHNRVNELNKLENKIRTLLPEVEIGVAHGQMPKRLFEKNVGDFYSGKLQMLLCTTII 747 Query: 872 ETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLE 931 E+G+DIP ANT+I++ + +GLAQL+QLRGRVGRS +A+A+ L +PK +T A++RL+ Sbjct: 748 ESGVDIPNANTLIVDDSQRYGLAQLYQLRGRVGRSTRRAFAYFLY-NPKRLTPKAKERLK 806 Query: 932 AIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGRE 991 A+ G+G LA D+EIRG GELLG+EQ G++ +IG LY E++E AV + +E Sbjct: 807 ALREFSGPGSGMKLAIKDMEIRGFGELLGKEQHGNISSIGLYLYKEMVERAVAEARGIKE 866 Query: 992 PSLEDLTSQQTEV-ELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRF 1050 + TE+ + ++P+++I D R+ Y+RIA +++ E+ EI+ EL DRF Sbjct: 867 LEPLEEKFIDTELHNIPYDMVIPEEYINDSFERMKIYRRIAMSRSVEEITEIEEELKDRF 926 Query: 1051 GLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQH 1110 G LPD R+LLD AR+R A L I+ F E + + A +IGL + ++ Sbjct: 927 GTLPDEVRSLLDAARIRIAAYNLSIK------------FIEYDPHSEAVIIGLKESGKKN 974 Query: 1111 YRLDGPTRLKFIQDLSERKTRIEWVRQ--FMRELEENAIA 1148 ++ L+ I + E K + +++ + ++ + Sbjct: 975 VKIFDG--LRNIFNEKESKVILYNIKEEKLLDTIKAIFLG 1012 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 70/404 (17%), Positives = 148/404 (36%), Gaps = 12/404 (2%) Query: 29 TLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDII 88 V E ER V+I P + R S D+ + + P++ + Sbjct: 14 LWVIENLERIPESSVIIFPSERELQRFLSFHSPSGDEGI--FFSHDVFPFEDVRVSAYVR 71 Query: 89 SSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSA 148 + R+S L L + ++ ++++ P + G ++ +L Sbjct: 72 NHRMSCLSNLQNKNIKRIYTSLDAILRKTLPPEAMKGSTKKIRIDDPFGFHP--DKLVEM 129 Query: 149 GYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEA 208 GY V V+E G+++ +G ++D+F GS LPYRL FDD ++ +++FD +QR+++ + Sbjct: 130 GYERVFTVVEPGQFSWKGEVVDIFVPGSVLPYRLILFDDIVEEIKLFDPGNQRSVKHISE 189 Query: 209 INLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEP 268 I + PA E T + + L + + + + I + ++ LF+ + Sbjct: 190 IEIFPAGEVLTIEENVSLAKLRIENAEKATGKRFSISPLNWQR-----MDTVVGLFYRQQ 244 Query: 269 LPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELF 328 L Y + + E + F+ E + + + L+ Sbjct: 245 -AWLGDYLGDDCFFLFVD-PEEGLKDFELRERETLEILSNKEVEKFIYRRFGTFSPTLLY 302 Query: 329 SELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFS 388 S K + + E + +L + ++ P + + E +G V Sbjct: 303 SVKKYGLISKREVETFEWTSLKYEDVKATRKNLPRKQEKYVPKAPVFDWSELEEGDFVVH 362 Query: 389 VESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEH 432 +E G + LG + + + ++ Y+ I + Sbjct: 363 IEY-GIGKFLGIRKINGVLGTREYLTIEYREGSKIYVPIERLDR 405 >UniRef50_C7IS11 Transcription factor CarD n=1 Tax=Thermoanaerobacter ethanolicus CCSD1 RepID=C7IS11_THEET Length = 765 Score = 733 bits (1892), Expect = 0.0, Method: Composition-based stats. Identities = 233/755 (30%), Positives = 379/755 (50%), Gaps = 27/755 (3%) Query: 7 YTLPVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQM 66 + L LT + A + I + V++IAPD A ++++++ F Sbjct: 16 EEFLKQRKGPILAYGLTDSQKAHIAHYIMTKFNKKVLVIAPDEVEARKIYEDLYSFNFGN 75 Query: 67 VMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGH 126 E L Y + Q+++S RL + +L ++ ++ + ++ P + Sbjct: 76 ASLFPKREALFYKIDAASQEVVSQRLQVIKKLSEESPHAVVTSIDAAVGKLIPMDLFKKY 135 Query: 127 ALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFD 186 V K G ++ + + L + GY V V G+++ RG ++D+F E PYR++ FD Sbjct: 136 QFVFKLGVTVNLEEVIKSLVTMGYERVQMVEGKGQFSVRGGIIDVFSPTEEYPYRIELFD 195 Query: 187 DEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTF----------- 235 DEIDS+R FDV +QR+LE ++ IN+ PA EF I+ S + Sbjct: 196 DEIDSIRTFDVITQRSLENIDKINIFPATEFIAGAEHIKKGISAVSNYLNSYLSKIKKSK 255 Query: 236 -----EVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTG--DL 288 ++++ E I +++++ I F+ + + + Y + +++ + Sbjct: 256 SGIAEKLQQKFEEIMEEITESKRVENIYELIDYFYDD-VYSIVDYMGEDAVIILDESSRI 314 Query: 289 ETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLP--T 346 + Q + F ++ L L+ +E+ +KN + + T P Sbjct: 315 KQRVNNLQMEFNENF-KALLEKGEVLPEQSKLFFDYEEILKRVKNNFLLIMNTLAKPGNE 373 Query: 347 KAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIK 406 + F +D L K+ + V+ ++ R L + L Sbjct: 374 LQPQTIVNFVSRSMHHFHGNMDILVDDL-KYYKNAGYKVLLLSGNQERARILKDTLDSFN 432 Query: 407 IAPQRIMRLD-EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTI 465 I I + + + + GF A+I + ++ G+ R+R + Sbjct: 433 IDTVVIKDSEYDIQKGQVVIYPASVSKGFEYVDAKFAVISDGEIFGQTKRRKRTVKIKNA 492 Query: 466 NPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSS 525 + I++ EL IG VVH+ +G+G+Y G+ ++ GI +YL + YA L+VPV Sbjct: 493 DK---IKSFTELEIGSYVVHVNYGIGKYEGIEKIKVDGIVRDYLKIIYAGGDTLFVPVEQ 549 Query: 526 LHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKH 585 L L+ +Y G + L+KLGG W RA++KA + V D+A +L+ +YA+R +G AF Sbjct: 550 LDLVQKYVGPTDNPPKLNKLGGSEWLRAKRKAKKAVEDLAKDLIQLYAKRQMVKGHAFSP 609 Query: 586 DREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLA 645 D + F + FP+E T DQ + I + DM + MDRL+CGDVG+GKTEVA+RAAF A Sbjct: 610 DTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTEVALRAAFKA 669 Query: 646 VDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKID 705 V + KQVA L PTT+LA QHY NF +RF +PV+IEM+SRFR+ KEQ++I+ E+AEG ID Sbjct: 670 VADGKQVAFLCPTTILAYQHYTNFIERFKEFPVKIEMLSRFRTPKEQSKIIKELAEGNID 729 Query: 706 ILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE 740 I++GTH+LLQ+D+KFKDLGLLI+DEE RFGV HKE Sbjct: 730 IIVGTHRLLQNDIKFKDLGLLIIDEEQRFGVVHKE 764 Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 39/107 (36%), Gaps = 3/107 (2%) Query: 790 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE--ARIAIGHGQMRE 847 V + V A + + G QV +L + E E +I + Sbjct: 654 VGYGKTEVALRAAFKAVADGKQVAFLCPTTILAYQHYTNFIERFKEFPVKIEMLSRFRTP 713 Query: 848 RELERVMNDFHHQRFNVLVCTT-IIETGIDIPTANTIIIERADHFGL 893 +E +++ + +++V T +++ I +II+ FG+ Sbjct: 714 KEQSKIIKELAEGNIDIIVGTHRLLQNDIKFKDLGLLIIDEEQRFGV 760 >UniRef50_A8F4U5 DEAD/DEAH box helicase domain protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F4U5_THELT Length = 939 Score = 732 bits (1891), Expect = 0.0, Method: Composition-based stats. Identities = 265/724 (36%), Positives = 427/724 (58%), Gaps = 8/724 (1%) Query: 404 RIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRR 463 + + A + + + + ++ F V+ + ++ + Q S++ Sbjct: 220 QEEFAKREREAREMLEKKQIEDYVENSQISFSSLVKRIEFFKPLEIDLNTLKILPQTSQK 279 Query: 464 TINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPV 523 + + I + EL G+ VVH ++G+G Y G+ + T EY +L Y + +YVPV Sbjct: 280 SRD-QIPIFDEEELIEGEFVVHRDYGIGVYDGVKKISNPLGTREYFVLRYEDST-VYVPV 337 Query: 524 SSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAF 583 +H I +Y G N + ++ W + ++ +R+ EL+ IY R G + Sbjct: 338 ERIHKIHKYIGDT-RNVRIDRIHSGNWKKRIERVKRNLREKVEELIRIYDTRQKISGLSL 396 Query: 584 KHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAF 643 D E + F + FP+ T DQ AI VLSD+ MDRL+CGD G+GKTEVA+RAAF Sbjct: 397 PGDPELEKRFAEFFPYAETDDQMTAIEEVLSDLANDKPMDRLLCGDAGYGKTEVALRAAF 456 Query: 644 LAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGK 703 V + KQVAVLVPTT+LA+QHY F R + + +++ ++ R S + +IL + GK Sbjct: 457 KCVVSGKQVAVLVPTTVLARQHYKIFTQRMSPFGIQVRLLDRSISTIMKKEILDGLFRGK 516 Query: 704 IDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTL 763 ID++IGTH LLQ++V+F DLGL+I+DEE FGV KE+ K +R NV++L+L+ATPIPRTL Sbjct: 517 IDVIIGTHALLQNNVRFSDLGLVIIDEEQSFGVEQKEKFKQLRTNVNVLSLSATPIPRTL 576 Query: 764 NMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQ 823 +MAM+GM+DLS+I TPP RL V T+V +Y + +VR A+LREI RGGQV Y++N + +IQ Sbjct: 577 HMAMTGMKDLSVINTPPIGRLPVITYVAKYSNQLVRGAVLREINRGGQVIYVHNRIHDIQ 636 Query: 824 KAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 + L ++PEA+I + HG+M R+L + F+ +V++CT+I+E+GIDIP ANTI Sbjct: 637 DVYQNLQHIIPEAKIVLAHGKMGIRKLTEAVRSFYEHDSDVILCTSILESGIDIPNANTI 696 Query: 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGF 943 I++ + +GLAQL+QLRGRVGRS +A+A+ L ++ A +RL+AI L G+GF Sbjct: 697 IVDDSHRYGLAQLYQLRGRVGRSTKRAFAYFLHDSE--ISEKALQRLQAIKQLTGSGSGF 754 Query: 944 ALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTE 1003 LA D++IRG G + G EQ G++ +G +LY+E++ + +K + S + + E Sbjct: 755 QLALRDMQIRGVGSVFGFEQHGNINDVGLNLYLEIMNQQLKGIKEEKSESRKLFVDTEME 814 Query: 1004 VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDI 1063 + ++P D++ R+ Y+R AS +T +E++ + EL DRFG LP+ A L+++ Sbjct: 815 -GIPGELVIPPDYVESPLERMRIYRRFASCETVSEIDGMVEELHDRFGKLPNQALMLVEL 873 Query: 1064 ARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHVNP--AWLIGLLQKQPQHYRLDGPTRLKF 1121 ++R A IRK+E + + + ++ + ++ +K Y ++ + F Sbjct: 874 FKIRLLASSKHIRKIEYRDNILKLIYEKQPSLKFKGKFICNEREKTYFFYNVEPGQVVGF 933 Query: 1122 IQDL 1125 +++L Sbjct: 934 LKEL 937 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 55/402 (13%), Positives = 135/402 (33%), Gaps = 50/402 (12%) Query: 34 IAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLS 93 + PV+++ P A L +++ F + P++ + ++ R+ Sbjct: 8 LKLNLEKPVLIVVPTEYEAQLLSQKLNAF------YFPSHDVFPFEEVAVSFEVRCRRIE 61 Query: 94 TLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHV 153 L++L + V++ ++ + ++ L A +++KG+ + + GY Sbjct: 62 ILWKLLNDPKIVIVCTLHAISRKTFSPVQLRQAARILRKGEVFHNPE--ETMLNLGYDRT 119 Query: 154 DQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLP 213 V GE++ RG ++D F + P R++ FD I+++R FD +QR++ +VE LLP Sbjct: 120 YIVRTGGEFSVRGDVIDFFGPLYDNPVRVELFDQTIEAIRCFDASTQRSVFKVEEAFLLP 179 Query: 214 AHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273 E+ ++ + ++ + Sbjct: 180 VREYLCNEHLFDTVPAKLGSN-----------------------------------STIL 204 Query: 274 SYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKN 333 Y + + + + + E + ++ ++ + L ++ Sbjct: 205 DYSDFEIFVAEFDRCQEEFAKREREAREMLEKKQIEDY-----VENSQISFSSLVKRIEF 259 Query: 334 WPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEG 393 + +++ L + ++P + + R + V G Sbjct: 260 FKPLEIDLNTLKILPQTSQKSRDQIPIFDEEELIEGEFVVHRDYGIGVYDGVKKISNPLG 319 Query: 394 RREALGELLARIK--IAPQRIMRLDEASDRGRYLMIGAAEHG 433 RE + +RI ++ + R + I G Sbjct: 320 TREYFVLRYEDSTVYVPVERIHKIHKYIGDTRNVRIDRIHSG 361 >UniRef50_B9K8D6 Transcription-repair coupling factor n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K8D6_THENN Length = 895 Score = 729 bits (1883), Expect = 0.0, Method: Composition-based stats. Identities = 266/632 (42%), Positives = 396/632 (62%), Gaps = 12/632 (1%) Query: 467 PDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSL 526 + ++ E+ G+ VVH EHG+ + GM L++ +YL L Y + LYVPV + Sbjct: 240 RSLPLVDIDEIEEGELVVHKEHGIAIFEGMIRLKSVLGERDYLKLKYEDA-VLYVPVEKI 298 Query: 527 HLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHD 586 + RY G L +L W R +K E + EL+++Y +R G D Sbjct: 299 DRVHRYIG-DPSQVKLDRLNRGRWKRTLKKVREDIEKRVRELVELYLKREEVRGTLLPGD 357 Query: 587 REQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 E + F ++FP+ TPDQ + I VL+D+ MDRL+CGD G GKTEVA+RAAF AV Sbjct: 358 PELEEKFAETFPYIETPDQQKCIEEVLTDLSSEKPMDRLLCGDAGVGKTEVALRAAFRAV 417 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 + KQVAVLVPTT+LA+QHY+NF++R + VR+E++ R+ +E+ +IL + +G+ID+ Sbjct: 418 VSGKQVAVLVPTTVLARQHYENFKERLEPFGVRVELLDSSRTLRERKEILEGLKKGEIDV 477 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 +IGTH LL V+F DLGL+I+DEE +FGV KE+ K MR +V++L+L+ATPIPRTL+MA Sbjct: 478 VIGTHALLNERVEFSDLGLVIIDEEQKFGVEQKEKFKKMRLSVNVLSLSATPIPRTLHMA 537 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 +SGM+DLS+I PP R V ++ EY+ +V+ A++RE+ RGGQV Y++N VE + + Sbjct: 538 LSGMKDLSVINAPPPGRKPVHVYIAEYNEELVKGAVVREVNRGGQVIYVHNRVEELPEVL 597 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 E L + PE RIA+ HG+M R +E+V+++F+ +VL+CTTIIE G+DIP ANT+I++ Sbjct: 598 ENLKRMFPELRIAMAHGKMSRRVMEKVVHEFYSGNIDVLLCTTIIENGVDIPNANTLIVD 657 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 A +GLAQL+QLRGRVGRS +A+A+ L P K + A +RL + + G+G +A Sbjct: 658 DAHRYGLAQLYQLRGRVGRSDRRAFAYFLYP--KGVPKSALERLRVLKAHTGPGSGLQIA 715 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVEL 1006 D+E+RG G++LG EQ G++ +IG LY E+L V + ++E+ Sbjct: 716 MKDMEMRGIGDVLGLEQHGNIISIGLKLYNEILRETVT-----KVKKKRVERKHTVQIEI 770 Query: 1007 RMPS---LLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDI 1063 P +P+D+I + RL Y+R+ASA E E+EEI E+ DRFG P+ + LLD Sbjct: 771 ENPPGRFFIPEDYISNPVERLRMYRRLASASEEGEIEEILEEMRDRFGEPPEEVKLLLDY 830 Query: 1064 ARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHV 1095 R+R +A KLGIRK+ + + + + + Sbjct: 831 FRIRIRASKLGIRKIRFDHFMVELLPGKNSPL 862 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 43/227 (18%), Positives = 95/227 (41%), Gaps = 14/227 (6%) Query: 43 VLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ 102 +L+ P+ + + + + LP + ++ R+ L++L + Sbjct: 4 ILLVPNEREIHL----------EGYLFYPSRDNLPLEDVPLSPEVKKKRMEILWRLLKGE 53 Query: 103 RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEY 162 ++ + L +++ L + +++ + GY V GE+ Sbjct: 54 NLKIVTTLKALTEKIFSPESLKERTIEVRRSASFYLSP--ERFVEMGYERTFTVQMPGEF 111 Query: 163 ATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKA 222 + RG +LD+F G + P R++ F + ++ +R FDV +QR+ ++V+ + +LP + + Sbjct: 112 SIRGGILDIFSPGYDFPVRIELFGEVVEDIRFFDVSTQRSFQKVDEVYILPFLD-EYGDS 170 Query: 223 AIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPL 269 ++ F R T E Y+++ K E + LFF E + Sbjct: 171 SLLDFVKDVRFTCENLEKALTEYRKIRKELKDLLKEKY-DLFFDEGV 216 >UniRef50_A7HNV8 DEAD/DEAH box helicase domain protein n=3 Tax=Thermotogaceae RepID=A7HNV8_FERNB Length = 923 Score = 724 bits (1869), Expect = 0.0, Method: Composition-based stats. Identities = 266/663 (40%), Positives = 394/663 (59%), Gaps = 20/663 (3%) Query: 439 RNLALICESDLL--------GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGV 490 + +I D+L + + + + P + + EL +G VVH +G+ Sbjct: 235 KKFGIISYEDILSKAQEIELKQPITQEKLLIEEEYIPSAPVLSEDELQVGDLVVHKRYGI 294 Query: 491 GRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAW 550 R+ + +E E+L+L +A+ LYVP+ + LI +Y G + N L L W Sbjct: 295 ARFTEIKKVETISGAKEFLVLNFADST-LYVPIERIDLIDKYIG-DDVNVKLDSLKKGTW 352 Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 S+ KA + + ++L I+ R G A D E F +FP+ T DQ +AI Sbjct: 353 SKKVSKAKRNIETIVRDMLLIHYIRNNTTGVALPGDSELESEFAKTFPYIETEDQLKAIQ 412 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 V D+ MDRL+ GD G+GKTEVA+RA F A+ + KQ A+L PTT+LA+QHY+N Sbjct: 413 DVFEDLVSGKPMDRLLVGDAGYGKTEVAIRAIFRAIVSGKQAALLAPTTVLARQHYENIA 472 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 +RF + +R+ ++ RF + KE+ +IL +V GKID+LIGTH +L ++V F DLGL+++DE Sbjct: 473 ERFKPFGIRVALLDRFVTKKEREEILRDVKNGKIDLLIGTHSIL-NNVVFADLGLVVIDE 531 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 E +FGV KE+ K +R NV +L+++ATPIPRTL+MA+S +++ S I TPP R V+ + Sbjct: 532 EQKFGVEQKEKFKKLRVNVHVLSMSATPIPRTLHMALSELKEFSEIKTPPFGRKEVQVHI 591 Query: 791 REYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMREREL 850 +D +VR AILREI RGGQV Y++N V I ERL EL+PE I IGHGQ + EL Sbjct: 592 GPFDDRIVRIAILREINRGGQVIYVHNRVNTIYDVYERLKELLPEVSIVIGHGQQSKSEL 651 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 +R ++ F H + +VL+CTTI+E G+D+P ANT+I++ A +GLAQL+QLRGRVGRS + Sbjct: 652 KRAIDMFFHGKADVLLCTTIVENGVDVPNANTLIVDDAHRYGLAQLYQLRGRVGRSDKIS 711 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 +A+ HPK + +RL AI S G+G +A D+EIRG G + G EQ G + I Sbjct: 712 FAYFF--HPKHVNDKVLERLYAIKSYVGPGSGLKIAMRDMEIRGIGAVFGLEQHGYINDI 769 Query: 971 GFSLYMELLENAVDALKAGREPSLEDLTSQQTEVE-LRMPSLLPDDFIPDVNTRLSFYKR 1029 G + Y+ELL+ + K E ++ TE+E + ++P+ +I D R+ FY+R Sbjct: 770 GLNYYLELLDETIKESKG------ELISKVDTELEGIPGSIIIPEAYIYDPFERMRFYRR 823 Query: 1030 IASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEF 1089 IASA + +EL +IK+EL DRFG +P+ LL LR K+G++K + V+EF Sbjct: 824 IASATSIDELMDIKLELEDRFGKIPNSVENLLKYGMLRVLLWKMGVKKATIGDSTIVVEF 883 Query: 1090 AEK 1092 Sbjct: 884 KNG 886 Score = 156 bits (394), Expect = 6e-36, Method: Composition-based stats. Identities = 75/397 (18%), Positives = 143/397 (36%), Gaps = 60/397 (15%) Query: 43 VLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQ 102 +LI P + + + D++ LPY++ P + S R+ LY L Sbjct: 8 ILIVPSEKETNI----------EGYYYIPDYDVLPYENLRPSWYVRSRRIYALY-LAVQG 56 Query: 103 RGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLS-RDALRTQLDSAGYRHVDQVMEHGE 161 + I + L+ V S + +K G LS + L +L GY V V E G Sbjct: 57 KLKGIATLRALLHYVMKPSEFKKYIYHLKPGDELSSPEELFAKL---GYERVFNVREGGT 113 Query: 162 YATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDK 221 ++ RG ++D +P R++ + + I+ +R FD+ +QR+ E++E+ LLPA EF ++ Sbjct: 114 FSIRGEIIDYLGPD-NMPVRIELYGNLIEEIRRFDLKTQRSQEKLESALLLPAREFVVEE 172 Query: 222 AAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTL 281 F+ E I +Q+ G G Y N Sbjct: 173 -------------FKKIEKLEPIDEQL-TGKYCDG--------------TFLDY-NVNFY 203 Query: 282 LVNTGDLETSAERFQADTLARFENRGVDPMR---PLLPPQSLWLRVDELFSELKNWPRVQ 338 + N + F+ + ++ ++ + + + E+ + Sbjct: 204 IYNKKSVIEHFSSFERELRNSIQDIYQKDEYKKFGIISYEDILSKAQEIELKQPITQEKL 263 Query: 339 LKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREAL 398 L E A + ++ DL V + + +F E + G +E L Sbjct: 264 LIEEEYIPSAPVLSEDELQVGDLVVHKRYG-----IARFTEIKKVETI-----SGAKEFL 313 Query: 399 GELLARIK--IAPQRIMRLDEASDRGRYLMIGAAEHG 433 A + +RI +D+ + + + + G Sbjct: 314 VLNFADSTLYVPIERIDLIDKYIGDDVNVKLDSLKKG 350 >UniRef50_A8ERW1 Transcription-repair coupling factor n=13 Tax=Epsilonproteobacteria RepID=A8ERW1_ARCB4 Length = 995 Score = 720 bits (1860), Expect = 0.0, Method: Composition-based stats. Identities = 262/914 (28%), Positives = 454/914 (49%), Gaps = 40/914 (4%) Query: 202 TLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQ 261 + ++ + I + P + F ++F + +++ G Y+ Sbjct: 78 SYKKQDKILISPIRTISYPLPKEKCF-----ESFTINFADRLNLEELKSKLYNWG-YYFV 131 Query: 262 PLFFSEPLPPL----FSYFPANTLL-VNTGDLETSAERFQADTLARFENRGVDPMRPLLP 316 + SE L P + + E + + ++ + + Sbjct: 132 DIVTSEGEVSLRGDILDICPLGSDFGYRVSLFDDEVESIRKFDIEDQKSSKEEIESFSIN 191 Query: 317 PQSLWLRVDELFSELKNWPRVQLKTEHLPTKAAN----ANLGFQKLPDLAVQAQQKAPLD 372 P L L + + + LG ++ Q A D Sbjct: 192 PAFLALDEATFEEINEQIQTISSDAFIKDIHSLGFWYLGELGEYLPQKMSSFITQDAL-D 250 Query: 373 ALRKFLETFDGPV----VFSVES--------EGRREALGELLARIKIAPQRIMRLDEASD 420 L + + V E + E ++ I+ EA Sbjct: 251 ELEEVYVFEEKRVNKDKFLLTPQIYNSKNYQEINPANVKEFISFHNDKKITIISGSEAKV 310 Query: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 +G L + +V L L+ + +++ + + L EL Sbjct: 311 KGYDLDLSDKNINYVFENYILNLVSDDEVIISL-----NKEVKKRRKKKVKLVLDELQYN 365 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 VVH ++G+G+Y G+ + G +++++ Y + KL VPV +L LI RY A Sbjct: 366 DFVVHEKYGIGQYKGIEPVTVMGAKRDFVIIQYQGEDKLLVPVENLDLIDRYVADGNSYA 425 Query: 541 PLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 + KLG ++++ ++K +K+ +A +++ + A R G D++ + F S FE Sbjct: 426 VVDKLGKGSFAKLKEKVKDKLFAIANDIIKLAAARELVNGIKINTDKKVLEDFQKSAGFE 485 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 T DQ ++I +L D+ MDRL+ GDVGFGKTEVAM A + + Q + PTTL Sbjct: 486 YTKDQKRSIKEILDDLSSGRVMDRLLSGDVGFGKTEVAMNALLAVILDGYQTIFVCPTTL 545 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LA QHY + + R ++ +R+ + +AKE+T I + I ++IGTH LL D+K Sbjct: 546 LATQHYHSIQKRLESFGIRVAKLDGKTTAKEKTSIKKGLENADIKLVIGTHSLL--DIKT 603 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 +L L+I+DEEH+FGV+ KE++K +R +V I +++ATPIPRTLN+A+S ++ +S + TPP Sbjct: 604 SNLALVIIDEEHKFGVKQKEKLKQLREDVHIFSMSATPIPRTLNLALSKLKGMSSLLTPP 663 Query: 781 ARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAI 840 + RL V+T+V+EY +++E ILRE RGGQ++Y++N++ +I+ + + +VP +I I Sbjct: 664 SERLGVRTYVKEYSEKLIKEIILREKRRGGQLFYVHNNIASIEAKKKDIEAIVPNIKIDI 723 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 H Q++ + E+++ F ++ F++L+ T+I+E+GI +P AN+III+ AD FG+A LHQLR Sbjct: 724 IHSQIKPEQAEKIIEAFENKEFDILLATSIVESGIHLPNANSIIIDGADRFGIADLHQLR 783 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGRS+ + Y + + K++T DA KRL A+ S LG+G ALA DLEIRG G ++G Sbjct: 784 GRVGRSNKEGYCYYVVEDKKSITDDAVKRLVALESNSYLGSGTALAHQDLEIRGGGNIIG 843 Query: 961 EEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV 1020 E QSG ++ IG+ LY+++LE+ + L E + +++L + + + D++I + Sbjct: 844 EAQSGHIKQIGYGLYLKMLEDTLATLSGD-----EKNEKKTVDIKLAISAYISDEYISED 898 Query: 1021 NTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG 1080 RL Y+R++ A E+ I+ E+ DRFG + +++ ++ A KLGI+ + Sbjct: 899 RVRLELYRRLSKASDIQEVYSIEEEMEDRFGKPDIVTKQFIELIIIKILALKLGIQTISS 958 Query: 1081 NEKGGVIEFAEKNH 1094 E A+ Sbjct: 959 YEMNITFTKADDTK 972 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 73/355 (20%), Positives = 136/355 (38%), Gaps = 32/355 (9%) Query: 36 ERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTL 95 +R +LI D + A ++ +I + LAD+ D + + TL Sbjct: 15 KRLKECQLLIVNDDRQA-QIASDIVSYLGFKPFLLADFRANFGDDLLSFSEELHEITKTL 73 Query: 96 YQLPT--MQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHV 153 + Q +LI P+ T+ + + RL+ + L+++L + GY V Sbjct: 74 GDFYSYKKQDKILISPIRTISYPLPKEKCFESFTINFA--DRLNLEELKSKLYNWGYYFV 131 Query: 154 DQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQR-TLEEVEAINLL 212 D V GE + RG +LD+ P+GS+ YR+ FDDE++S+R FD++ Q+ + EE+E+ ++ Sbjct: 132 DIVTSEGEVSLRGDILDICPLGSDFGYRVSLFDDEVESIRKFDIEDQKSSKEEIESFSIN 191 Query: 213 PAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPL 272 PA D+A E + Q +S I ++ L L Sbjct: 192 PAF-LALDEATFE--------------EINEQIQTISSDAFIKDIHSL-GFWY---LGEL 232 Query: 273 FSYFP-ANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSEL 331 Y P + + L+ E + FE + V+ + LL PQ + + + Sbjct: 233 GEYLPQKMSSFITQDALDELEEVYV------FEEKRVNKDKFLLTPQIYNSKNYQEINPA 286 Query: 332 KNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVV 386 + + T + + + + L + D ++ Sbjct: 287 NVKEFISFHNDKKITIISGSEAKVKGYDLDLSDKNINYVFENYILNLVSDDEVII 341 >UniRef50_B1LBI8 DEAD/DEAH box helicase domain protein n=5 Tax=Thermotogaceae RepID=B1LBI8_THESQ Length = 893 Score = 719 bits (1856), Expect = 0.0, Method: Composition-based stats. Identities = 265/647 (40%), Positives = 403/647 (62%), Gaps = 8/647 (1%) Query: 449 LLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEY 508 L A +R I ++ E+ G VVH EHG+ + G+ L+ +Y Sbjct: 222 LKNVEKASVSLSTRIEKKESLPILDVDEIEEGGLVVHREHGIAIFEGVVRLKGVLGERDY 281 Query: 509 LMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAEL 568 L L Y + LYVP+ + + +Y G L ++ W + +K E + EL Sbjct: 282 LKLKYEDA-VLYVPIEKIDRVHKYIG-DPSQVKLDRMNRGKWKQTLKKVREDIEKKIREL 339 Query: 569 LDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCG 628 +++Y +R +G + D E + F +SFP+ TPDQ Q+I V+SD+ MDRL+CG Sbjct: 340 VELYMKRQEAQGLSLPGDPELEEKFAESFPYIETPDQQQSIEEVMSDLASEKPMDRLLCG 399 Query: 629 DVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRS 688 D G GKTEVA+RAAF AV + KQVAVLVPTT+LA+QHY+NF++R + V++E++ R+ Sbjct: 400 DAGVGKTEVALRAAFRAVVSGKQVAVLVPTTVLARQHYENFKERMETFGVKVELLDSSRT 459 Query: 689 AKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRAN 748 A+E+ +I+ ++ +G+IDI+IGTH LL ++F DLGL+I+DEE +FGV KER K +R + Sbjct: 460 AREKKEIIEKLKKGEIDIIIGTHSLLNERIEFSDLGLVIIDEEQKFGVEQKERFKKLRLS 519 Query: 749 VDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILR 808 V++LTL+ATPIPRTL+MA+SGM+D S+I +PP R V +V EY +V+ A++REI R Sbjct: 520 VNVLTLSATPIPRTLHMALSGMKDFSVINSPPPGRKPVYVYVAEYSDDLVKGAVIREINR 579 Query: 809 GGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCT 868 GGQV Y++N VE + + E+L + PE IA+ HG+M R +ER++++F+ +VL+CT Sbjct: 580 GGQVIYVHNRVEELPEVFEKLKRMFPELEIAVAHGKMSRRAMERIVHEFYRGNIDVLLCT 639 Query: 869 TIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQK 928 TIIE G+DIP ANT+I++ A +GL+QL+QLRGRVGRS +A+A+ L P + A + Sbjct: 640 TIIENGVDIPNANTLIVDDAHRYGLSQLYQLRGRVGRSDRRAFAYFLYPKGTPRS--ALE 697 Query: 929 RLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKA 988 RL+ + S G+G +A D+E+RG G++LG EQ G++ ++G LY E+L+ + K Sbjct: 698 RLKVLKSYTGFGSGLQIALKDMELRGVGDVLGLEQHGNVVSVGLKLYNEILKETITRFKE 757 Query: 989 GREPSLEDLTSQQTEVE-LRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELI 1047 R +E S E+E +P+D++ + RL Y+R+AS+ E +LEEI E+ Sbjct: 758 RR---IEKKHSVNVEIENPPGRFFIPEDYVQNPVERLRLYRRLASSLDEEDLEEILEEMR 814 Query: 1048 DRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNH 1094 DRFG P+ + L+D RLR +A KLG++K+ + I + Sbjct: 815 DRFGEPPEEVKLLVDYFRLRIRASKLGVKKIRFDHSMVEIFPNRDSP 861 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 44/209 (21%), Positives = 93/209 (44%), Gaps = 2/209 (0%) Query: 65 QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLH 124 + + + LP + +I R+ L++L + + + L ++V FL Sbjct: 16 EGYIFYPSRDVLPLEDVVLSPEIKGKRIEILWRLLNGENIKIATTLKALTEKVFSPDFLR 75 Query: 125 GHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDF 184 ++L++ + +L+ +L GY V V GE+A RG ++D++ G++ P R++ Sbjct: 76 ENSLMITRSTKLTLSP--ERLVEMGYERVFTVQNVGEFAIRGDIIDIYSPGNDFPVRIEL 133 Query: 185 FDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHI 244 F DEI+ +R F VD+QR+ + + +LP + + ++ ++ R E + Sbjct: 134 FGDEIEEIRFFKVDTQRSFQSADKTLILPFVDLYGESTLLDFVKTDVRFICEDLQKVLDE 193 Query: 245 YQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273 Y++ K E + F + + Sbjct: 194 YRKFRKEMRDLLKERYNDFFDERVVEVVL 222 >UniRef50_C0QQC7 Transcription-repair-coupling factor (Trcf) (ATP-dependent helicase mfd) n=2 Tax=Hydrogenothermaceae RepID=C0QQC7_PERMH Length = 947 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 273/730 (37%), Positives = 427/730 (58%), Gaps = 39/730 (5%) Query: 417 EASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAE 476 E D + V A I E + + + Sbjct: 253 EDIDNSFKINRLPLRQPVVLKDEKTAFIPE-------------------DSKKVDLEIQP 293 Query: 477 LHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGA 536 + G ++H + G+G + G+ T E G ++++L YAN+ K+YV I RY Sbjct: 294 IKEGDYIIHEDFGIGIFRGIETREIRGKKYDFMILEYANNEKVYVSYLHFDKIHRYKASG 353 Query: 537 EENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS 596 L ++GG +W ++K ++ +A +L+ +Y +R + + + F S Sbjct: 354 --VITLDRIGGTSWRNLKRKVKNSLKKIAFQLVKLYTERKQIRRDPLVVENDLIEAFERS 411 Query: 597 FPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 656 FP+ TPDQ +AI + D+ M+R++CGDVGFGKTEVA+RA F+ N KQ VLV Sbjct: 412 FPYIETPDQLKAIKDIKRDLSSDRPMERVICGDVGFGKTEVAIRAVFINAVNGKQSLVLV 471 Query: 657 PTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS 716 PTT+L+ QHY NF++R + V +E +SR +S KE I V EGKID++IGTHK L Sbjct: 472 PTTVLSYQHYRNFKERLEPFGVVVENLSRLKSKKETEDIFKRVKEGKIDVIIGTHKALNE 531 Query: 717 DVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 776 ++KFK+LGLL++DEEHRFGVR KE+IKA++ +VD L +TATPIPRTLNMA+SG++D+S+I Sbjct: 532 NLKFKNLGLLVIDEEHRFGVRAKEKIKALKKDVDTLYMTATPIPRTLNMALSGLKDMSVI 591 Query: 777 ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 +TPP R+ KTFV + ++++A+ E+ RGGQV+YL+N +E+I++ A+ L+ L A Sbjct: 592 STPPEGRVETKTFVSIFSEDLIKKAVNFELERGGQVFYLHNRIESIKERADHLSSLFRGA 651 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 RI I HG+MR +E+E+++ +F ++ ++LV T+IIETGIDIPTANT+IIERAD FGLAQL Sbjct: 652 RIGIAHGKMRPKEIEKIILEFIERKIDILVSTSIIETGIDIPTANTLIIERADLFGLAQL 711 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 + LRGRVGR + QAY +LL P +T +A+KR++ I L G+G ++ D++IRG G Sbjct: 712 YHLRGRVGRGNIQAYCYLLLPPQ--ITENAEKRIDVILRLTRPGSGLKVSIEDMQIRGVG 769 Query: 957 ELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDF 1016 +LG EQSG ++ +G+ +Y++LL+ A++ RE + +++ S +P+DF Sbjct: 770 NILGVEQSGHIKAVGYEMYLKLLQEAINEEMDRRER--------EPVIQVDFESYIPEDF 821 Query: 1017 IPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIR 1076 IPD R++ Y IA E++ +K L + + +P L+I++L++ A+ GI Sbjct: 822 IPDPQERMNIYMAIAKTTDIEEIDRLKEYLKNFYDFIPSAFSLYLEISKLKKAAKNSGIT 881 Query: 1077 KLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVR 1136 K+E E I F +P ++ + + R G R++ + K+ I + Sbjct: 882 KIELKEPVSTIYFDSD--FDPDLIMEIARNF--ETRGIGTDRIEIFLN----KSEINKLT 933 Query: 1137 QFMRELEENA 1146 + +E+A Sbjct: 934 DILSAKKESA 943 Score = 122 bits (306), Expect = 1e-25, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 88/230 (38%), Gaps = 17/230 (7%) Query: 19 LGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWET--- 75 + TG+ + A A+ V+I PD + ++++ + D + Sbjct: 5 IFGATGSYPEYITASTAKE---RTVVILPDRKRQKLFLNDLNAYLD-----FFKRDIKVI 56 Query: 76 -LPYDSFSPHQDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQ 134 LP + R L L + + + +L +V + +K G Sbjct: 57 ELPESDDPSDIESQIKRNLFLMYLLKGKDFIGVATEKSLDIKV--DKNFSERLIDIKTGS 114 Query: 135 RLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRV 194 ++RD L +L +GY + + GE++ +G + ++ + ++D F D+++S+ Sbjct: 115 EINRDLLIHKLIESGYIREEYIENEGEFSVKGGFISVYIPFYGV-VQIDLFGDQVESV-- 171 Query: 195 FDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHI 244 F T + + ++ + P ++ P + + +T + + I Sbjct: 172 FLKSKLETRKSINSVTIFPLYDKPLISRDGIDLQFRDIETVRLFDLIDKI 221 >UniRef50_Q8RH90 Transcription-repair coupling factor n=12 Tax=Fusobacterium RepID=Q8RH90_FUSNN Length = 981 Score = 708 bits (1828), Expect = 0.0, Method: Composition-based stats. Identities = 284/799 (35%), Positives = 449/799 (56%), Gaps = 42/799 (5%) Query: 318 QSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKF 377 + + D L +++K L E ++ ++++ + Sbjct: 200 EYYYENNDILQAKIKRLINENLDREEDILNKIAELSKIGIQIEIQKFSEEELKQFEVIDR 259 Query: 378 LETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDT 437 ++ ++ SE E+ + ++ G+ Sbjct: 260 VKKLSENTKITIYSE-EATRYKEIFKGYPVKFEKY----------------PLFEGYKTD 302 Query: 438 VRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMT 497 + ++ + ++ G RV R R + + + E+ V+H GVG + G+ Sbjct: 303 DK--LILTDREIKGIRVKRERVEK-----KALRYKTVDEIKEQDYVIHENFGVGIFLGLE 355 Query: 498 TLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKA 557 +E +YL + YA++ KL+VPV S++ I ++ ++ ++KLG + R + K Sbjct: 356 NIEG----QDYLKIKYADEDKLFVPVDSINKIEKFINISDVIPEIYKLGRKGFKRKKAKL 411 Query: 558 AEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMC 617 +E + A E++ I A+R GF F D + F ++FPF TP Q++AI V DM Sbjct: 412 SEDIEIFAKEIIKIQAKRNLGNGFKFSKDTVMQEEFEETFPFTETPAQSKAIEDVKRDME 471 Query: 618 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 MDRL+CGDVGFGKTEVA+RA F AV + KQV +LVPTT+LA+QHY+ F +RF N+P Sbjct: 472 SGKVMDRLICGDVGFGKTEVAIRATFKAVMDGKQVILLVPTTVLAEQHYERFSERFKNYP 531 Query: 678 VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVR 737 V IE++SR +S KEQT+ L + G D++IGTH+LL D+KFKD+GLLI+DEE +FGV+ Sbjct: 532 VHIEILSRVQSKKEQTESLKRIENGSADLVIGTHRLLSDDIKFKDVGLLIIDEEQKFGVK 591 Query: 738 HKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMV 797 KE++K ++ ++D+LTLTATPIPRTLN+++ G+RDLS+I T P R + T + + Sbjct: 592 AKEKLKKIKGDIDVLTLTATPIPRTLNLSLLGIRDLSVIDTSPEGRQKIHTEYIDNNKNF 651 Query: 798 VREAILREILRGGQVYYLYNDVENIQKAAERLAELVPE-ARIAIGHGQMRERELERVMND 856 ++E IL EI R GQV+Y++N V+ ++ + + EL+PE +++ HGQM R++++ + D Sbjct: 652 IKEIILSEISREGQVFYIFNSVKRMESKVKEIRELLPEYIKVSYIHGQMLPRDIKKNIQD 711 Query: 857 FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 F + +VLV TTIIE GIDI ANT+IIE + GL+Q++QLRGR+GRS ++Y ++LT Sbjct: 712 FENGNVDVLVATTIIENGIDIENANTMIIEGVEKLGLSQVYQLRGRIGRSTKKSYCYMLT 771 Query: 917 PHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYM 976 K T +A+KR E+I D G LA D +IRG GE+LGE+Q G++ET G++LYM Sbjct: 772 NENK--TKNAKKREESIREF-DNLTGIDLAMEDSKIRGVGEILGEKQHGAVETFGYNLYM 828 Query: 977 ELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTE 1036 ++L + LK E L+++ + P LPD++I + N ++ YKR + K Sbjct: 829 KMLNEEILKLKGEAEEELDEVDVEL-----NFPRFLPDNYI-EKNEKVKIYKRALALKNL 882 Query: 1037 NELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEG---NEKGGVIEFAEKN 1093 +ELE + EL DRFG + A+ D ++R A+ LGI ++ N+ +I F EK Sbjct: 883 DELENLYNELEDRFGKIKSEAKGFFDFIKIRIIARDLGITTIKQDKENKDRILINFNEK- 941 Query: 1094 HVNPAWLIGLLQKQPQHYR 1112 +N +I LL + Y Sbjct: 942 KINVDKIIYLLSNKKIMYS 960 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 62/465 (13%), Positives = 160/465 (34%), Gaps = 49/465 (10%) Query: 34 IAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLS 93 + +V I +N + F ++ + + +++ Sbjct: 12 WLKNKKNNLVYICSSNRNIDDYFFVLKDFYKGKILRI--------KKENEARELKKYNYD 63 Query: 94 TLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHV 153 L + + ++ ++++ ++ ++ + +++ ++KG+ L+ L +L A + Sbjct: 64 LLELINSNEKFIILISLDYFLEDY----YSEANSIFIEKGKNLNIKDLEEKLIDADFEKT 119 Query: 154 DQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLP 213 V + EY+ RG +LD+F + + P R++FF +E+D + FD++SQ ++E+ ++I L Sbjct: 120 YMVAQRKEYSIRGDILDIFNINQDNPVRIEFFGNEVDRITYFDINSQLSIEKKDSIELY- 178 Query: 214 AHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLF 273 + +K I S ++ E + I Q K + ++ + Sbjct: 179 -IDNNKNKKDIFSLMSMNKNKIEYYYENNDILQAKIKRLINENLDREE------------ 225 Query: 274 SYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSEL-K 332 L G ++ ++F + L +FE +++ + E+ K Sbjct: 226 DILNKIAELSKIG-IQIEIQKFSEEELKQFEVIDRVKKLSENTKITIYSEEATRYKEIFK 284 Query: 333 NWPRVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKF-----LETFDGPV-- 385 +P K + L ++ +++ ++ ++ D + Sbjct: 285 GYPVKFEKYPLFEGYKTDDKLILTDREIKGIRVKRERVEKKALRYKTVDEIKEQDYVIHE 344 Query: 386 ---VFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAA--------EHGF 434 V E L + + + +D + +++ I GF Sbjct: 345 NFGVGIFLGLENIEGQDYLKIKYADEDKLFVPVDSINKIEKFINISDVIPEIYKLGRKGF 404 Query: 435 VDTVRNL---ALICESDLLGERVARRRQDSRRTINPDTLIRNLAE 476 L I +++ + R + + + E Sbjct: 405 KRKKAKLSEDIEIFAKEIIKIQAKRNLGNGFKFSKDTVMQEEFEE 449 >UniRef50_Q9ZJ57 Transcription-repair-coupling factor n=19 Tax=Helicobacter RepID=MFD_HELPJ Length = 1001 Score = 706 bits (1823), Expect = 0.0, Method: Composition-based stats. Identities = 275/926 (29%), Positives = 456/926 (49%), Gaps = 61/926 (6%) Query: 200 QRTLEEVEAINLLPAHEFPTD---KAAIELFRSQWRDTFEVKRDPE-------HIYQQVS 249 Q + E I + P K +E F+ + + +K + I V Sbjct: 76 QALENKQETIIIAPISALLHPLPKKELLESFKITLLEKYNLKDLKDKLFYYGYEILDLVE 135 Query: 250 KG-----------TLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSA------ 292 + ++ FF + PA + + LE Sbjct: 136 VEGEASFRGDIVDIYIPNSKAYRLSFFDAECESIKELDPATQMSLKEDLLEIEIPPTLFS 195 Query: 293 --ERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAAN 350 E D + E ++ L LW ++ L + + + L Sbjct: 196 LDEPSYKDLKTKVEQSPLNSFSKDLTSFGLWFLGEKANDLLGVYQSI-ISPRALEEIQEL 254 Query: 351 ANLGFQKLPDLAVQA--QQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIA 408 A+L + + L + +G + LLA K Sbjct: 255 ASLNELDDERFKFLKVLENAQGYEDLEIHVHALEGFIALHSN------RKITLLAPNKTI 308 Query: 409 PQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPD 468 + + +A +I F R + + +R + Sbjct: 309 LDNSISVLDA--GNMECVIAPFVLNFKTPDRIFISLNSFERKKKRQKSK----------- 355 Query: 469 TLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHL 528 L EL+ G+ VVH ++GVG ++ + G ++L + Y + KL +PV +LHL Sbjct: 356 ---LALNELNAGEWVVHDDYGVGVFSQLIQHSVLGSKRDFLEIAYLGEDKLLLPVENLHL 412 Query: 529 ISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDRE 588 I+RY ++ +LG ++ + + K K+ ++A +++++ A+R G Sbjct: 413 IARYVVQSDSVPVKDRLGKGSFLKLKAKVRAKLLEIAGKIIELAAERNLILGKKMDTHLA 472 Query: 589 QYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 + ++F FE T DQ +AI + D+ MDRL+ GDVGFGKTEVAM A F A N Sbjct: 473 ELEIFKSHAGFEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLN 532 Query: 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILI 708 Q A++VPTTLLA QH++ + RF N+ V++ + R+ E++++L V G +D+LI Sbjct: 533 GFQSALVVPTTLLAHQHFETLKARFENFGVKVARLDRYIKTSEKSKLLKAVELGLVDVLI 592 Query: 709 GTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMS 768 GTH +L KFK+LGL++VDEEH+FGV+ KE +K + +V L+++ATPIPRTLNMA+S Sbjct: 593 GTHAIL--GTKFKNLGLMVVDEEHKFGVKQKEALKELSKSVHFLSMSATPIPRTLNMALS 650 Query: 769 GMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAER 828 ++ +S + TPP R +TF++E + +++E I RE+ R GQ++Y++N + +I K + Sbjct: 651 QIKGISSLKTPPTDRKPSRTFLKEKNDELLKEIIYRELRRNGQIFYIHNHIASISKVKTK 710 Query: 829 LAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 L +L+P+ +IAI H Q+ E E +M +F + VL+CT+I+E+GI +P ANTIII+ A Sbjct: 711 LEDLIPKLKIAILHSQINANESEEIMLEFAKGNYQVLLCTSIVESGIHLPNANTIIIDNA 770 Query: 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATH 948 +FGLA LHQLRGRVGR + + + L K++ A KRL A+ LG+G ++A H Sbjct: 771 QNFGLADLHQLRGRVGRGKKEGFCYFLIEDQKSLNEQALKRLLALEKNSYLGSGESIAYH 830 Query: 949 DLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRM 1008 DLEIRG G LLG++QSG ++ IG++LY +LE+A+ L G++ + E++L + Sbjct: 831 DLEIRGGGNLLGQDQSGHIKNIGYALYTRMLEDAIYELSGGKKR-----LEKSVEIQLGV 885 Query: 1009 PSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQ 1068 + L + I + RL Y+R++ + +E+ +I E+ DRFG + D + L I L+ Sbjct: 886 SAFLNPELIASDSLRLDLYRRLSLCENVDEVGQIHEEIEDRFGKMDDLSAQFLQIITLKI 945 Query: 1069 QAQKLGIRKLEGNEKGGVIEFAEKNH 1094 A +LGI KL + + ++++ Sbjct: 946 LANQLGILKLSNFNQNITLTYSDEKK 971 >UniRef50_B2V9E1 DEAD/DEAH box helicase domain protein n=2 Tax=Sulfurihydrogenibium RepID=B2V9E1_SULSY Length = 938 Score = 698 bits (1801), Expect = 0.0, Method: Composition-based stats. Identities = 254/660 (38%), Positives = 409/660 (61%), Gaps = 15/660 (2%) Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 ++ L G ++H + G+G Y G+ T E G ++++L Y+ K+YV I +Y Sbjct: 286 DVEPLKEGDYIIHEDFGIGIYRGIETREIRGKVYDFMILEYSGGEKVYVSYLHFDKIHKY 345 Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 + + K+GG +W ++K E ++++A LL+IY++R K D E Sbjct: 346 K--TDSIIQIDKIGGTSWRNLKKKVKESLKNIAKNLLEIYSKRQNIYRPPLKTDDELISK 403 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F FPF TPDQ +AI + SD +P M+RL+CGDVGFGKTEVA+R F++V N Q Sbjct: 404 FEREFPFVETPDQIKAIKDIKSDFLKPKPMERLICGDVGFGKTEVAIRGIFISVINGYQA 463 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 +LVPTT+LA QHY ++R + + ++ +SR +S KE + EGKID+L+ THK Sbjct: 464 LLLVPTTVLAYQHYKKLKERLEPYGIIVKNLSRLKSKKENDNTIKAFEEGKIDVLVATHK 523 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 +L +++ F L LL++DEEHRFGV+ KE+I+ +R +VD L LTATPIPRTLNMA+SG++D Sbjct: 524 ILHTNLSFNKLELLVIDEEHRFGVKAKEKIRQIRESVDTLYLTATPIPRTLNMALSGLKD 583 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 832 +S++ TPP R +KT+V +D ++++AI EI R GQV+YL+N +E I++ A+ L L Sbjct: 584 ISVLNTPPEGRYEIKTYVSNFDEELIKKAIEFEIDRNGQVFYLHNRIETIKETADFLKNL 643 Query: 833 VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 892 V +A++ HG+M+ E+E+ + DF + NVL+ T+IIETGIDIPTANT+I++RAD FG Sbjct: 644 VKKAKVDFIHGKMKPSEIEKKIIDFLEGKTNVLISTSIIETGIDIPTANTLIVDRADLFG 703 Query: 893 LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 952 LAQL+ LRGRVGR + QAY +L+ P K +T DA++R++ + L G+G ++ D++I Sbjct: 704 LAQLYHLRGRVGRGNIQAYCYLIVP--KEITKDAKRRIDTLLKLTRPGSGLKVSIEDMQI 761 Query: 953 RGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLL 1012 RG G +LG EQSG ++++GF Y++LL+ A++ + +E + E+E+ + Sbjct: 762 RGPGNILGVEQSGFIKSLGFDYYVKLLKEAINEERGEKEF--------EAEIEIDFDYYI 813 Query: 1013 PDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 P DFI D RL+ Y ++ A+ E+E+++ L + + LP L I+ +++ + Sbjct: 814 PQDFIKDPTERLNIYMAVSKAEDYEEIEKLRKYLKEFYNDLPKAFDLYLVISEIKKLLSR 873 Query: 1073 LGIRKLEGNEKGGVIEFAEKNHVNPAWLIGLLQKQPQHYRLDGPTRLKFIQDLSERKTRI 1132 L I+KL ++ +++ NP ++ L++ +++ + ++ L E K +I Sbjct: 874 LKIKKLHMKSDLAYLQLSDQT--NPEVILKLIENL-NPVKIEKEKIIFQVESLEELKEKI 930 Score = 128 bits (323), Expect = 1e-27, Method: Composition-based stats. Identities = 47/247 (19%), Positives = 97/247 (39%), Gaps = 16/247 (6%) Query: 34 IAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISS--R 91 + + P+ LI ++A + + D D E + + S D++S R Sbjct: 14 LLIQKEKPLFLITDSEKSAKESFLNLKAYKD---FFKKDLEIIHFPSSQEKLDLLSQIER 70 Query: 92 LSTLYQLPTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYR 151 +Y++ + +L+ + L +V + +KK L+R+ L +L GY Sbjct: 71 NYAIYKILAGKNWILVFSKDALNVKVRTKENFLKDIINIKKSGELNREFLIEKLYKLGYI 130 Query: 152 HVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINL 211 + GE++ RG L + + +DFF D I+++ F T +E+E I++ Sbjct: 131 REEFPENEGEFSVRGGFLSINIPKVGI-VDIDFFGDTIENI--FLKSKILTRKEIEEISI 187 Query: 212 LPAHEFPTDKAAIELFRSQ----WRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSE 267 LP ++F +F + +RD + IY+ ++ + F + Sbjct: 188 LPLYDFNIKSQTPLIFEDEESTFFRDYLKNDIYTLDIYEDLNLPIKGQ----FFSKFSNP 243 Query: 268 PLPPLFS 274 + + Sbjct: 244 EVGTIKD 250 >UniRef50_D1AW65 DEAD/DEAH box helicase domain protein n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AW65_STRM9 Length = 900 Score = 685 bits (1769), Expect = 0.0, Method: Composition-based stats. Identities = 268/880 (30%), Positives = 454/880 (51%), Gaps = 51/880 (5%) Query: 219 TDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPA 278 + + L + D V + + +KG L I +FF E Sbjct: 49 YESKYVNLSSYSFIDLVGVNIEILEFLNKNTKGILFLDINLALKIFFDE----------- 97 Query: 279 NTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELF---SELKNWP 335 + + + + E + + L G +L +R D + S L N Sbjct: 98 ----FKSKEFKVNEEYSRDEILKYLVENGYKKEYTVLNKGEFAIRGDIIDIYPSNLDNPI 153 Query: 336 RVQLKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRR 395 R+ L + + + ++ L + + + + S+ S+G Sbjct: 154 RLDFFDTILENIKIFSTYDQRSIENIEEITVFGNVLSGMEREI-----VDMISIFSKGNI 208 Query: 396 EALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVA 455 E E +++ ++++ D+ +++ + F + L+ E +R Sbjct: 209 EIFLENKEFLEVKLEQMLMFDKDNEK-------VLKERFNKLIEKGNLL-EVSRSKDRNY 260 Query: 456 RR--RQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTY 513 + + R N+ ++ G V+H+E G+G Y G + +YL + Y Sbjct: 261 QDEIKSKRERIEKKGIKYSNINQILEGDYVIHVEFGIGIYMGAVNIN----DRDYLYIQY 316 Query: 514 ANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYA 573 A++ KLY+PV L IS+Y L+ LG + R ++ E V A EL++I A Sbjct: 317 ADNDKLYIPVEKLDRISKYMS-TGIAPKLYSLGTKGFKRREKRIREDVEKFAQELINIQA 375 Query: 574 QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFG 633 +R D + F + F F T DQ +A+ + D+ MDR++ GDVG+G Sbjct: 376 KRKLVRKLPLIKDTLWQEEFEEKFSFNLTWDQQKAVEDIKHDLESGRLMDRILVGDVGYG 435 Query: 634 KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT 693 KTEVAMRAAF A++N Q A+L PTT+LA QH++ RF ++ + + +SR + K Sbjct: 436 KTEVAMRAAFKAIENGYQCAILAPTTVLANQHFERCHKRFEDFGISVNNLSR-LTGKNTD 494 Query: 694 QILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILT 753 +L + GKID++IGTH+LL DVKFK+LGLLI+DEE +FGV KE+IK + ++ +LT Sbjct: 495 DVLDGLKNGKIDLVIGTHRLLGDDVKFKNLGLLIIDEEQKFGVNAKEKIKKRKEDIHLLT 554 Query: 754 LTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVY 813 L+ATPIPRTLN+A+ G+RD+S+I + P RL + T ++ +++ IL+E+ R GQV+ Sbjct: 555 LSATPIPRTLNLALLGIRDISLIQSSPMDRLPIIT--QKIQEDEIKKVILKELSRDGQVF 612 Query: 814 YLYNDVENIQKAAERLAELVPE-ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 872 Y+ N+V+ + + + L +L+P+ I HG++ RE+++ +NDF +F++L+ +TI+E Sbjct: 613 YITNNVKGMAEKQKSLKKLMPDFVNIEYIHGKLSPREIKQKINDFDEGKFDILIASTIVE 672 Query: 873 TGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLL-TPHPKAMTTDAQKRLE 931 GIDI AN+IIIE GL+Q++QLRGRVGR Q Y +LL + + + K LE Sbjct: 673 NGIDITNANSIIIENYTSLGLSQIYQLRGRVGRGKRQGYCYLLDSEYKSKKGKEKDKSLE 732 Query: 932 AIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGRE 991 I +E G G+ L+ DL IRGAGE+LGE+Q G+++ G+ LY+++L+N ++ LK + Sbjct: 733 KIEGVE--GGGYLLSLEDLNIRGAGEILGEKQHGAIDMFGYDLYLKMLKNEINKLKGEKV 790 Query: 992 PSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFG 1051 + TE++L +P+++I + + R+ YKR A + E+EL E+ E+ DRFG Sbjct: 791 REF-----KNTEIDLLNNGYIPEEYI-EKDERILIYKRYAEVQNESELNELTEEIRDRFG 844 Query: 1052 LLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAE 1091 +P + + +++ + I K++ N+K ++ E Sbjct: 845 KIPKQMQNFIYSIKIKLYMIENNIDKIKENDKEYILTLQE 884 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 43/207 (20%), Positives = 93/207 (44%), Gaps = 12/207 (5%) Query: 41 PVVLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQ-DIISSRLSTLYQLP 99 +V+I+ N ++ + Q + +E+ + S D++ + L L Sbjct: 24 KMVVISSASNNLEYYYNILKQEGSE-------YESKYVNLSSYSFIDLVGVNIEILEFLN 76 Query: 100 TMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEH 159 +G+L + +N L ++ F + K + SRD + L GY+ V+ Sbjct: 77 KNTKGILFLDIN-LALKIFFDEF---KSKEFKVNEEYSRDEILKYLVENGYKKEYTVLNK 132 Query: 160 GEYATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPT 219 GE+A RG ++D++P + P RLDFFD ++++++F QR++E +E I + Sbjct: 133 GEFAIRGDIIDIYPSNLDNPIRLDFFDTILENIKIFSTYDQRSIENIEEITVFGNVLSGM 192 Query: 220 DKAAIELFRSQWRDTFEVKRDPEHIYQ 246 ++ +++ + E+ + + + Sbjct: 193 EREIVDMISIFSKGNIEIFLENKEFLE 219 >UniRef50_Q4HTG2 Transcription-repair coupling factor n=2 Tax=Campylobacter RepID=Q4HTG2_CAMUP Length = 974 Score = 680 bits (1754), Expect = 0.0, Method: Composition-based stats. Identities = 267/844 (31%), Positives = 448/844 (53%), Gaps = 41/844 (4%) Query: 282 LVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQLKT 341 ++ G+ S F DT + +E +L+++ L Sbjct: 154 ILFFGEEIESIRYFDLDTQKSIPSELDKLEICPFLSHFSKSAYEEFEEKLESFESKAL-- 211 Query: 342 EHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPVVF--------SVESEG 393 +LGF + D + +++KF +F+ SV + Sbjct: 212 -----IKDINSLGFWCVDDFEDYLKLD--FKSIKKFDASFENVDFINARILPEASVYRDL 264 Query: 394 RREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICESDLLGER 453 + + A I+ +EA + L + F + L +I +++ Sbjct: 265 QSIYNQDFFALHHSKKITILAQNEALFKQLELDMSNII--FKQSTLRLNVISSDEIILSL 322 Query: 454 VARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTY 513 + ++ +R N L EL IG +VH ++GVG++ G+ L G E++ L+Y Sbjct: 323 NKKDKKRQKRKAN-----LILDELKIGDFIVHEDYGVGKFLGLELLNISGAKKEFVALSY 377 Query: 514 ANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYA 573 N+ KL +PV +L++I +Y G L +LG + + ++K K+ +A++++ + A Sbjct: 378 QNNDKLLLPVENLYMIDKYLGVGGAIPLLDRLGKSTFIKLKEKLKTKLLALASQIIAMAA 437 Query: 574 QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFG 633 +RA + D E F F T DQ +A +L D MDRL+ GDVGFG Sbjct: 438 KRALIKPKKIMIDLEAQADFVQRAGFSYTEDQVKACEDILEDFKSSRVMDRLLSGDVGFG 497 Query: 634 KTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQT 693 KTEVAM A F + + V VPTTLL+ QHY + + RF + +++ + RF SAKE+ Sbjct: 498 KTEVAMNAIFPVLKSGFSVFFFVPTTLLSHQHYQSLKKRFKEFDLKVFKLDRFTSAKEKK 557 Query: 694 QILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILT 753 +L E+ +++GTH LL V+ +++ L+I+DEEH+FGV+ KE++K N +L+ Sbjct: 558 YLLEELKNNTPCVVVGTHALLS--VECENVALVIIDEEHKFGVKQKEKLKEFSQNSHLLS 615 Query: 754 LTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVY 813 ++ATPIPR+LN A+S ++ SI+ TPP RL +++FVRE + +++EAILRE+ RGGQ++ Sbjct: 616 MSATPIPRSLNQALSSIKSYSILQTPPEDRLDIRSFVRESEDALLKEAILRELRRGGQIF 675 Query: 814 YLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIET 873 Y++N + +I++ + L L + RI I H ++ + E M F ++ +++L+CT+I+E+ Sbjct: 676 YIHNHIASIKQCEKHLKSLFKDLRILILHSKIDAKTTEEEMLKFENKAYDLLLCTSIVES 735 Query: 874 GIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAI 933 GID+P NTIIIE+++ FG+A LHQLRGRVGRS+ Q Y + L ++ A KRL ++ Sbjct: 736 GIDLPNVNTIIIEKSERFGMADLHQLRGRVGRSNKQGYCYFLVEDKANLSEAALKRLVSL 795 Query: 934 ASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPS 993 S LGAG LA HDLEIRG G LLG +QSG +E IG+SLY+++LE+ ++AL Sbjct: 796 ESNSFLGAGSLLAYHDLEIRGGGNLLGLDQSGHIEQIGYSLYLKMLEDELNAL-----SK 850 Query: 994 LEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLL 1053 E + + E++L + + L + I + + RL Y+R++ + + L EI+ E+ DRFG L Sbjct: 851 NESVCENKLELKLNINAFLNPELINEDSLRLELYRRLSKCEDSSRLYEIEAEIEDRFGKL 910 Query: 1054 PDPARTLLDIARLRQQAQKL---------GIRKLEGNEKGGVIEFAEKNHVNP-AWLIGL 1103 + L + R++ A I+ ++ N++ VI+ K+ + ++ Sbjct: 911 DLYTKQFLALIRIKILASGKFKAISNYMQNIQLIKINDEKEVIKAKSKDEDDILEAILVY 970 Query: 1104 LQKQ 1107 L+K Sbjct: 971 LRKS 974 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 107/769 (13%), Positives = 255/769 (33%), Gaps = 87/769 (11%) Query: 43 VLIAPDMQNALRLHDEISQFTDQMVMNLADWETLPYDSFSPHQDIISSRLSTLYQL-PTM 101 +L+ + + A L +S F L D+ D + L Sbjct: 17 LLLCENEKEADLLAQ-VSAFFGIKTFVLPDFRAEFGDDLRAFSKELFELCKVLNAYHKEN 75 Query: 102 QRGVLIVPVNTLMQRVCPHSFLHGHALVMKKGQRLSRDALRTQLDSAGYRHVDQVMEHGE 161 + +LI P+ ++++++ L G ++ K + + + L+ + GY VD V + GE Sbjct: 76 AQKILISPLASVLKKLPSKRHLQG--FILDKTKPFNVELLKDEFLRLGYEFVDMVQDKGE 133 Query: 162 YATRGALLDLFPMGSELPYRLDFFDDEIDSLRVFDVDSQRTL-EEVEAINLLPAHEFPTD 220 + RG +LD+F + E P R+ FF +EI+S+R FD+D+Q+++ E++ + + P Sbjct: 134 LSLRGEVLDIFCINEENPVRILFFGEEIESIRYFDLDTQKSIPSELDKLEICPFL-SHFS 192 Query: 221 KAAIELFRSQWRDTFEVKRDPEHIYQQVSKGTL--PAGIEYWQPLFFSEPLPPLFSYFPA 278 K+A E F + + + + + ++ E + L F S+ Sbjct: 193 KSAYEEFEEKLESF-----ESKALIKDINSLGFWCVDDFEDYLKLDFKSIKKFDASFENV 247 Query: 279 NTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLLPPQSLWLRVDELFSELKNWPRVQ 338 + + + Q+ F +L + EL + + Sbjct: 248 DFINARILPEASVYRDLQSIYNQDFFALHHSKKITILAQNEALFKQLELDMSNIIFKQST 307 Query: 339 LKTEHLPTKAANANLGFQKLPDLAVQAQQKAPLDALRKFLETFDGPV------------- 385 L+ + + +L + +A + F+ D V Sbjct: 308 LRLNVISSDEIILSLNKKDKKRQKRKANLILDELKIGDFIVHEDYGVGKFLGLELLNISG 367 Query: 386 ----------------VFSVESEGRREA---------LGELLARIKIAPQRIMRLDEASD 420 + VE+ + L + L + + + Sbjct: 368 AKKEFVALSYQNNDKLLLPVENLYMIDKYLGVGGAIPLLDRLGKSTFIKLKEKLKTKLLA 427 Query: 421 RGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIG 480 ++ AA+ + + + E+ + A + + ++ + + Sbjct: 428 LASQIIAMAAKRALIKPK-KIMIDLEAQADFVQRAGFSYTEDQVKACEDILEDFKSSRVM 486 Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 ++ + G G+ + + + + L L R+ + Sbjct: 487 DRLLSGDVGFGK-TEVAMNAIFPVLKSGFSVFFFVPTTLLSHQHYQSLKKRFKEFDLKVF 545 Query: 541 PLHKLGGDAWSR----------------ARQKAAEKVRDVAAELLDIYAQ---RAAKEGF 581 L + + + + +VA ++D + + ++ Sbjct: 546 KLDRFTSAKEKKYLLEELKNNTPCVVVGTHALLSVECENVALVIIDEEHKFGVKQKEKLK 605 Query: 582 AFKHDREQYQLFCDSFPFETTPDQAQAINAVLS-DMCQPLAMDRLVCGDVGF--GKTEVA 638 F + + P QA++++ S + Q DRL D+ ++E A Sbjct: 606 EFSQNSHLLSMSATPIPRSLN----QALSSIKSYSILQTPPEDRL---DIRSFVRESEDA 658 Query: 639 MR--AAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQIL 696 + A + Q+ + +Q + + F + RI ++ AK + + Sbjct: 659 LLKEAILRELRRGGQIFYIHNHIASIKQCEKHLKSLFKDL--RILILHSKIDAKTTEEEM 716 Query: 697 AEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAM 745 + D+L+ T +++S + ++ +I+++ RFG+ +++ Sbjct: 717 LKFENKAYDLLLCT-SIVESGIDLPNVNTIIIEKSERFGMADLHQLRGR 764 >UniRef50_A9S9T2 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9S9T2_PHYPA Length = 792 Score = 671 bits (1731), Expect = 0.0, Method: Composition-based stats. Identities = 239/683 (34%), Positives = 370/683 (54%), Gaps = 19/683 (2%) Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITG--EYLMLTYANDAKLYVPVSSLHLIS 530 + L G+ VVH GVG + G+ G T +Y+ L YA+ + L+ Sbjct: 106 DPDTLSPGEYVVHKRVGVGCFIGIKYEVPAGKTKPAKYIYLKYADGVAKLRAKQASRLLY 165 Query: 531 RY--AGGAEENAPLHKLGG-DAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDR 587 RY G L KL W + K ++ + ++++Y R + + + Sbjct: 166 RYFSPGDVGRAPVLSKLNDPGNWEKRVSKGKLAIQKLVVNMMELYIHRLKQTRPVYPKNS 225 Query: 588 EQYQLFCDSFPFETTPDQAQAINAVLSDM-CQPLAMDRLVCGDVGFGKTEVAMRAAFLAV 646 + F FP++ T DQ QAI V DM + MDRL+CGDVGFGKTEVA+RA FLA Sbjct: 226 KLMDSFAAKFPYKETSDQVQAIADVERDMTERETPMDRLICGDVGFGKTEVALRALFLAA 285 Query: 647 DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDI 706 +Q +L PTT+LA+QHYD R RFA + +++ ++SRF+ E+ +++A +++G + I Sbjct: 286 SAGRQAMLLAPTTVLAKQHYDVIRQRFAGYDMKVALLSRFQKDGEKKEVIAGISDGSLSI 345 Query: 707 LIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMA 766 ++GTH LL + V++ +LGLL+VDEE RFGVR KERI +M+ +VD+LTL+ATPIPRTL +A Sbjct: 346 VVGTHSLLGNQVRYHNLGLLVVDEEQRFGVRQKERITSMKTSVDVLTLSATPIPRTLYLA 405 Query: 767 MSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA 826 +SG RD S+I TPPA R + T + E++ V++AI E+ RGGQV+Y+ V+ ++++ Sbjct: 406 LSGFRDASLITTPPAERRPITTHLMEFNPEAVKKAIDFELKRGGQVFYVVPRVKGMEESK 465 Query: 827 ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIE 886 L P+ I + HGQ LE M F + +L+CT+I+E+G+DI NTIIIE Sbjct: 466 AILESYFPDVGIGVAHGQQSATVLEESMEQFSEGTYLILLCTSIVESGLDIRRVNTIIIE 525 Query: 887 RADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALA 946 FGLAQL+QLRGRVGRS +A+A++ P + ++ DA +RL A+ LG GF LA Sbjct: 526 DVQLFGLAQLYQLRGRVGRSDREAHAYMFHPSKENLSDDALERLVALEDCCGLGQGFQLA 585 Query: 947 THDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVEL 1006 D+ IRG G + GE+QSG + IG LY+E+L L L ++T ++ +++L Sbjct: 586 ERDMAIRGIGSVFGEKQSGDVAKIGVDLYLEMLFEG---LSNVDLQKLPEVTFEEVQLDL 642 Query: 1007 RMPSLLPDDFIPDVNTRLSFYKRIASAKT--ENELEEIKVELIDRFGLLPDPARTLLDIA 1064 + + +P D++ R + A N L + L + +G P LL Sbjct: 643 AVSTHIPGDYVTSAALRDKVLRDAEKAANNGMNALMQFTNRLRNEYGPEPPTVEMLLKTL 702 Query: 1065 RLRQQAQKLGIRKLEGNEKGGVIEFAEKNH--------VNPAWLIGLLQKQPQHYRLDGP 1116 +++ A LGI ++ K V++ + + A + L + + G Sbjct: 703 YVKRLAADLGIHRIRTRGKTVVMDTKMEPEAYEMLSSAITTASVQDSLTYESGRIEMKGL 762 Query: 1117 TRLKFIQDLSERKTRIEWVRQFM 1139 L + L + +R + Sbjct: 763 IGLPVERQLERVFVCLAEMRNGL 785 >UniRef50_Q2R377 CarD-like transcriptional regulator family protein, expressed n=14 Tax=Magnoliophyta RepID=Q2R377_ORYSJ Length = 832 Score = 643 bits (1660), Expect = 0.0, Method: Composition-based stats. Identities = 219/630 (34%), Positives = 358/630 (56%), Gaps = 15/630 (2%) Query: 473 NLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRY 532 + EL G+ VVH + GVG++ ++ + +Y+ + YA+ + ++ RY Sbjct: 153 DPRELEAGEYVVHKKVGVGKFVCISAEDGL----DYVFIQYADAMAKLAVDQAARMLYRY 208 Query: 533 AGGAEENAP--LHKLGGDA-WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQ 589 E+ P L KL + W + R K V+ + L+++Y QR ++ + Sbjct: 209 NLPHEKQRPRNLSKLNDPSTWEKRRLKGKLAVQKMVVNLMELYLQRMRQKRPPY-PKPVG 267 Query: 590 YQLFCDSFPFETTPDQAQAINAVLSDM-CQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN 648 F FP+E TPDQ QA V D+ + MDRL+CGDVGFGKTEVAMRA F+ + Sbjct: 268 MDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPMDRLICGDVGFGKTEVAMRAIFIVISA 327 Query: 649 HKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIEMISRFRSAKEQTQILAEVAEGKIDIL 707 Q VL PT +LA+QHYD +RF+N+P +++ M S ++ +E+ +++ ++ G + I+ Sbjct: 328 GFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVAMFSGAQTKEEKDELITKIRNGDLHII 387 Query: 708 IGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAM 767 +GTH +L + + +LGLL+VDEE +FGV+ KE+I + +A++D+LTL+ATPIPRTL +A+ Sbjct: 388 VGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEKIASYKASIDVLTLSATPIPRTLYLAL 447 Query: 768 SGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAE 827 +G RD S+++TPP R+AV+T+V + AI E+ RGGQV+Y+ ++ I + Sbjct: 448 TGFRDASLMSTPPPERVAVRTYVSGFSKERALSAIKFELARGGQVFYVVPRIKAIDDVLQ 507 Query: 828 RLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 L + +P+ +A+ HG+ + ++ M F +LVCT IIE+GIDIP ANT++++ Sbjct: 508 FLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGEVKILVCTHIIESGIDIPNANTMVVQY 567 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 A+ FGLAQL+QLRGRVGRS + +A+L ++ A RL AI DLG GF +A Sbjct: 568 AELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSLLSKIATDRLGAIEEHSDLGQGFHVAE 627 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELR 1007 D+ IRG G L GE+QSG + +G L+ ++L D+L + L + + ++++ Sbjct: 628 KDMGIRGFGSLFGEQQSGDVANVGIDLFFDML---FDSLSKVDQFCLIPVPYKDVQLDIN 684 Query: 1008 MPSLLPDDFIPDVNTRLSFYKRIASAKTEN--ELEEIKVELIDRFGLLPDPARTLLDIAR 1065 + S L ++I + + A A ++ L + +L ++G P LL Sbjct: 685 ISSRLSSEYISYLENPVELLNEAAKAAEKDLWTLIQFTEDLRRQYGKEPRDMELLLKKLY 744 Query: 1066 LRQQAQKLGIRKLEGNEKGGVIEFAEKNHV 1095 +R+ A LGI ++ + K +++ V Sbjct: 745 VRRMAADLGISRIYSSGKMIIMKTNMNKKV 774 >UniRef50_B9GNF6 Predicted protein n=2 Tax=rosids RepID=B9GNF6_POPTR Length = 939 Score = 642 bits (1657), Expect = 0.0, Method: Composition-based stats. Identities = 228/694 (32%), Positives = 351/694 (50%), Gaps = 59/694 (8%) Query: 457 RRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGGITG--EYLMLTYA 514 + + + + + L G VVH + G+GR+ G+ + G + EY+ + YA Sbjct: 118 KGDRVAKEGDVFSYKVDPYTLSSGDYVVHKKVGIGRFVGIKFDMSKGSSEAIEYVFIEYA 177 Query: 515 NDAKLYVPVSSLHLISRYAGGAEENAP--LHKL-GGDAWSRARQKAAEKVRDVAAELLDI 571 + + ++ RY + P L KL AW R + K ++ + +L+++ Sbjct: 178 DGMAKLPVKQASRMLYRYNLPNDTKKPRTLSKLSDNGAWERRKTKGKVAIQKMVVDLMEL 237 Query: 572 YAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDM-CQPLAMDRLVCGDV 630 Y R + + F FP+E TPDQ QA V+ D+ + MDRL+CGDV Sbjct: 238 YLHRLKQRRPPY-PKTPAMVDFSAQFPYEPTPDQKQAFIDVMRDLTERETPMDRLICGDV 296 Query: 631 GFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPV-RIEMISRFR-- 687 GFGKTEVA+RA F V KQ VL PT +LA+QH+D +RF+ +P ++ ++SRF+ Sbjct: 297 GFGKTEVALRAIFCVVSAGKQAMVLAPTIVLARQHFDVISERFSKYPHIKVALLSRFQAY 356 Query: 688 ----SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEH----------- 732 S E+ L G +DI++GTH LL S V + +LGLL+VDEE Sbjct: 357 LLLQSKAEKEMYLEMTKHGHLDIIVGTHSLLGSRVVYNNLGLLVVDEEQTTNKRKGKGNF 416 Query: 733 ----------------RFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSII 776 RFGV+ KE+I + + +VD+LTLTATPIPRTL +A++G RD S+I Sbjct: 417 SINHDFANEKEKKESRRFGVKQKEKIASFKTSVDVLTLTATPIPRTLYLALTGFRDASLI 476 Query: 777 ATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEA 836 +TPP R+ +KT + Y + AI E+ RGGQV+Y+ ++ +++ + L + Sbjct: 477 STPPPERVPIKTHLSAYSKERLISAIKYELDRGGQVFYVLPRIKGLEEVKDFLEQSFSNV 536 Query: 837 RIAIGHGQMRERE-------------LERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 IA+ HGQ ++ LE M F +L+CT I+E+G+DI ANTI Sbjct: 537 EIAVAHGQHVTKKGNSFLLVKQYSKLLEDTMEQFAQGEIKILICTNIVESGLDIQNANTI 596 Query: 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGF 943 II+ FGLAQL+QLRGRVGR+ +A+A L P +T A +RL A+ ++LG GF Sbjct: 597 IIQDVQLFGLAQLYQLRGRVGRADKEAHAHLFYPDKSMLTDQALERLAALEECQELGRGF 656 Query: 944 ALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTE 1003 LA D+ IRG G + GE+Q+G + +G + E+L + L E + + Q + Sbjct: 657 QLAERDMGIRGFGTIFGEQQTGDVGNVGIDFFFEMLFES---LSKVDEHRVISVPYQSVQ 713 Query: 1004 VELRMPSLLPDDFIPDVNTRLSFYKRIASAKTEN--ELEEIKVELIDRFGLLPDPARTLL 1061 V+L + LP D+I + + A + L + L ++G P LL Sbjct: 714 VDLNINPHLPSDYINSLENPMEIINEAEKAAETDIWSLMQFTENLRCQYGKEPCSMEILL 773 Query: 1062 DIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHV 1095 +R+ A +GI ++ + K +E V Sbjct: 774 KKLYIRRMAADIGITRIYASGKMVGMETNMSKKV 807 >UniRef50_A4RX81 Predicted protein n=4 Tax=Mamiellales RepID=A4RX81_OSTLU Length = 754 Score = 620 bits (1600), Expect = e-176, Method: Composition-based stats. Identities = 233/717 (32%), Positives = 368/717 (51%), Gaps = 23/717 (3%) Query: 445 CESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGMTTLEAGG- 503 +++ + R + I +L G+ VVH ++G+G++ GM L Sbjct: 37 SAAEVEEKNRRVRDGYVEDAFGVNNAIDPF-KLVTGEYVVHRKYGIGQFLGMKVLAVESA 95 Query: 504 ----ITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAE--ENAPLHKLGGDA-WSRARQK 556 +L L Y + P +S L+ R+ + L+KL + W +K Sbjct: 96 NEGTQNKPFLFLKYQDATAKISPEASRRLLYRFCSPGGLVKPPKLNKLNDKSTWDLRERK 155 Query: 557 AAEKVRDVAAELLDIYAQRAAKEGFAFK-HDREQYQLFCDSFPFETTPDQAQAINAVLSD 615 +R + + +Y QR + D E+ + F SFPF TPDQ AI + D Sbjct: 156 TEATIRRLVVNQMVVYLQRLQCVREPYPLPDPERAKQFDASFPFTLTPDQTSAIQEITED 215 Query: 616 MCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 + Q MDRLV GDVGFGKTEVAMRA F + V ++ PTT+LA+QH N RF Sbjct: 216 LQQDAPMDRLVIGDVGFGKTEVAMRAMFHVASSGGGVFMMAPTTVLAKQHAANLAVRFRP 275 Query: 676 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-SDVKFKDLGLLIVDEEHRF 734 + +E+++R A +Q I + +GK+ I++GTHKL+ +K L LL++DEE RF Sbjct: 276 LGINVELVTRHIQAAKQNTIFDDFRDGKVQIIVGTHKLVNLEQEYYKQLRLLVIDEEQRF 335 Query: 735 GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYD 794 GV+HK++I A++A VD+LTL+ATPIPRTL+MAMSG RD S++ TPP R + T + + Sbjct: 336 GVKHKDQISALKAEVDVLTLSATPIPRTLHMAMSGFRDASLVQTPPPERRPINTVLAPQN 395 Query: 795 SMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVM 854 +R+AI EI R GQ+YY+ + ++ A +RL L P +I HGQM ++ M Sbjct: 396 DDDIRKAIEYEISRNGQIYYIVPRINMMRDACDRLLRLFPNLQIMTAHGQMDGEAIDDAM 455 Query: 855 NDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL 914 F + +VL+ TTI+E+G+DIP NTIIIE FGLA L+QLRGRVGR+ QAYA++ Sbjct: 456 ESFSNGSADVLIATTIVESGLDIPNCNTIIIENVQFFGLASLYQLRGRVGRAGRQAYAYM 515 Query: 915 LTPHPK-AMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFS 973 + +TT AQ+RL A+ LG GF L+ D+ IRG G + GE+QSG ++++G Sbjct: 516 FYSADESELTTGAQERLAALEECCGLGEGFRLSERDMGIRGVGTMFGEKQSGDVDSVGAD 575 Query: 974 LYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSL---LPDDFIPDVNTRLSFYKRI 1030 LY+ELL + + R +++ +V + + +I I Sbjct: 576 LYLELLYKQLQRIDNLRIKTIDAD-----DVRVGAAGYEFGITPFYIATTEASDEVKATI 630 Query: 1031 ASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGG-VIEF 1089 S ++ ++ + D FG + + + + +R A LGI+ + + +I+ Sbjct: 631 DSITAHEQVHDVLALMRDTFGEPDEFSLSCVFAREMRILAGDLGIQGILLDSPTAPIIDL 690 Query: 1090 AEKNHVNPAWLI-GLLQKQPQHYRLDGPTRLKFIQDLSERKTRIEWVRQFMRELEEN 1145 + L+ + +D RLK + D+ ++ + + +R++ + Sbjct: 691 ITDASIMVKELLVEGISDAYDVEIIDTGIRLKTMTDM-TMHGKVMYTVKILRQITGS 746 >UniRef50_B7GBS8 Predicted protein n=2 Tax=Bacillariophyta RepID=B7GBS8_PHATR Length = 942 Score = 602 bits (1553), Expect = e-170, Method: Composition-based stats. Identities = 234/666 (35%), Positives = 355/666 (53%), Gaps = 70/666 (10%) Query: 476 ELHIGQPVVHLEHGVGRYA---------------------------------------GM 496 E+ G VVH ++G+GR+ + Sbjct: 96 EVFPGDFVVHRKYGIGRFETTCLRPKTKLNEEERLAQEERRAEILTTELRKRKRVTPDEI 155 Query: 497 TTLEAGGITGE-----------YLMLTYANDAKLYVPVSSLHLISRYAGGAEE-NAPLHK 544 + A T E L +TYA+ ++VPV + +SRY G L + Sbjct: 156 QEIRARFGTEEDTDPLSNPQTTVLEITYADA-VVHVPVDRAYRLSRYRAGDAVVKPKLSR 214 Query: 545 LGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY-QLFCDSFPFETTP 603 + G+AWS+A+QK E +A ++L +YA R + F E Q F SF +E T Sbjct: 215 VKGEAWSKAKQKVEENTLQLAQDVLALYATRETLQRQPFDPSVEDVVQEFSKSFLYEPTT 274 Query: 604 DQAQAINAVLSDMC-QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLA 662 DQ + + +DM + MDRL+CGDVGFGKTEVA+RA F ++ N +Q A+L PT +LA Sbjct: 275 DQKKCFEEIENDMVWRSRPMDRLICGDVGFGKTEVAIRALFRSIINGRQAALLAPTGVLA 334 Query: 663 QQHYDNFRDRFAN---WPVRIEMISRFRSAKEQ--TQILAEVAEGKIDILIGTHKLLQSD 717 QHY N R + + I ++ + + ++ E+ GK +++GTH LL ++ Sbjct: 335 AQHYKNIVKRMGPGTEYNINIALLRGGMGKQTKAGRELRGEIEGGKTQLIVGTHALLSNE 394 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 +KFK+LGLL+VDEE RFGV+ KER+K + +D+LTL+ATPIPRTL M++SG+RD S I Sbjct: 395 MKFKNLGLLVVDEEQRFGVKQKERLKLICDGIDVLTLSATPIPRTLQMSLSGIRDTSTIR 454 Query: 778 TPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAELVPEAR 837 +PP R T V+++ +V+ AI E+ RGGQ YY+ + + +A + + L P R Sbjct: 455 SPPPMRKPTVTHVQDFSEDIVKTAISTELARGGQCYYVVPRISMLDEAEQTIQSLFPGIR 514 Query: 838 IAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLH 897 I HG+M+ E + +F ++VL+ TT+IE G+DIP+ NTI+++ + FG++ L+ Sbjct: 515 IIQAHGRMQRNGAEENVAEFAEGNYDVLLATTVIENGVDIPSVNTIVVQNSQAFGMSTLY 574 Query: 898 QLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGE 957 QLRGRVGRS QA+A+ L +++T A RL+AI L +LG+GF +A DLEIRGAG Sbjct: 575 QLRGRVGRSDKQAFAYFLYR-EESITEQAAMRLQAIGELSELGSGFDVANRDLEIRGAGS 633 Query: 958 LLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPS-----LL 1012 LLG EQSG +GF LYM +L+ ++ L+ L+ +T + L Sbjct: 634 LLGTEQSGMAAKVGFDLYMRMLKKSIRKLRG-----LDLPLVPRTNILFPTDGSPSTFSL 688 Query: 1013 PDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1072 P FI + R S + A++ + L + E ++G LP + L L ++ Sbjct: 689 PMSFIERQSERRSEETKARLAESTSALVTLTNEWKSKYGSLPSTLQNQLKTLHLHACTRR 748 Query: 1073 LGIRKL 1078 LGI + Sbjct: 749 LGIDLV 754 >UniRef50_B7F5N3 cDNA clone:J013044D20, full insert sequence n=6 Tax=Magnoliophyta RepID=B7F5N3_ORYSJ Length = 590 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 196/536 (36%), Positives = 316/536 (58%), Gaps = 8/536 (1%) Query: 564 VAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDM-CQPLAM 622 + L+++Y QR ++ + F FP+E TPDQ QA V D+ + M Sbjct: 1 MVVNLMELYLQRMRQKRPPY-PKPVGMDQFTAEFPYEPTPDQNQAFIDVDKDLTERETPM 59 Query: 623 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWP-VRIE 681 DRL+CGDVGFGKTEVAMRA F+ + Q VL PT +LA+QHYD +RF+N+P +++ Sbjct: 60 DRLICGDVGFGKTEVAMRAIFIVISAGFQAMVLAPTVILAKQHYDVMSERFSNYPDIKVA 119 Query: 682 MISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKER 741 M S ++ +E+ +++ ++ G + I++GTH +L + + +LGLL+VDEE +FGV+ KE+ Sbjct: 120 MFSGAQTKEEKDELITKIRNGDLHIIVGTHAVLTERMAYNNLGLLVVDEEQKFGVQQKEK 179 Query: 742 IKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREA 801 I + +A++D+LTL+ATPIPRTL +A++G RD S+++TPP R+AV+T+V + A Sbjct: 180 IASYKASIDVLTLSATPIPRTLYLALTGFRDASLMSTPPPERVAVRTYVSGFSKERALSA 239 Query: 802 ILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR 861 I E+ RGGQV+Y+ ++ I + L + +P+ +A+ HG+ + ++ M F Sbjct: 240 IKFELARGGQVFYVVPRIKAIDDVLQFLKDSLPDVPMAVAHGKKVSKNIQLAMEKFACGE 299 Query: 862 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKA 921 +LVCT IIE+GIDIP ANT++++ A+ FGLAQL+QLRGRVGRS + +A+L Sbjct: 300 VKILVCTHIIESGIDIPNANTMVVQYAELFGLAQLYQLRGRVGRSGTEGFAYLFYTDKSL 359 Query: 922 MTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLEN 981 ++ A RL AI DLG GF +A D+ IRG G L GE+QSG + +G L+ ++L Sbjct: 360 LSKIATDRLGAIEEHSDLGQGFHVAEKDMGIRGFGSLFGEQQSGDVANVGIDLFFDML-- 417 Query: 982 AVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRIASAKTEN--EL 1039 D+L + L + + ++++ + S L ++I + + A A ++ L Sbjct: 418 -FDSLSKVDQFCLIPVPYKDVQLDINISSRLSSEYISYLENPVELLNEAAKAAEKDLWTL 476 Query: 1040 EEIKVELIDRFGLLPDPARTLLDIARLRQQAQKLGIRKLEGNEKGGVIEFAEKNHV 1095 + +L ++G P LL +R+ A LGI ++ + K +++ V Sbjct: 477 IQFTEDLRRQYGKEPRDMELLLKKLYVRRMAADLGISRIYSSGKMIIMKTNMNKKV 532 >UniRef50_A5GF54 ATP-dependent DNA helicase RecG n=15 Tax=Bacteria RepID=A5GF54_GEOUR Length = 829 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 173/481 (35%), Positives = 253/481 (52%), Gaps = 17/481 (3%) Query: 534 GGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLF 593 +A L L A + R A ++ + L A +EG F+ + + Sbjct: 334 HFPANDADLQTLNNGATAAHRTLAFDEFFFLELGLALKKNGIALEEGIDFQVTHKYTKEL 393 Query: 594 CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVA 653 PF T Q + ++ + +DM P M RLV GDVG GKT VA+ AA +AV+N QVA Sbjct: 394 LKLLPFSLTNAQRRVLSEIKNDMMAPHPMHRLVQGDVGCGKTLVALMAALVAVENDYQVA 453 Query: 654 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKL 713 ++ PT +LA+QH+ N V++ +++ K + L E+A G ++IGTH + Sbjct: 454 IMAPTEILAEQHFLNIHHWCDALGVKVALLTSSLKGKAKKAALEEIATGNAQVVIGTHAV 513 Query: 714 LQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDL 773 +Q V+F+ LGL I+DE+HRFGV + +K N DIL +TATPIPRTL M + G L Sbjct: 514 IQDKVEFRRLGLGIIDEQHRFGVLQRGILKKKGQNPDILVMTATPIPRTLAMTVFGDLSL 573 Query: 774 SIIATPPARRLAVKTFVR-EYDSMVVREAILREILRGGQVYYLYNDVENIQK-------- 824 S+I P R V+T + E V I E+ +G Q Y +Y VE +K Sbjct: 574 SVIDELPPGRTPVETRIAFESRRSQVYGVIREEVKKGRQAYVIYPLVEESEKSDLKAAAQ 633 Query: 825 AAERLA-ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTI 883 AE+L ++ P+ R+ + HG+MR E E VM F + ++LV TT+IE GID+P A + Sbjct: 634 MAEQLQSDVFPDLRVGLLHGRMRPDEKEAVMAAFKARETDILVATTVIEVGIDVPNATVM 693 Query: 884 IIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGF 943 +IE A+ FGL+QLHQLRGRVGR ++ LLT ++ D +KRL + S D GF Sbjct: 694 VIEHAERFGLSQLHQLRGRVGRGSDKSRCILLTTG--RLSEDGEKRLRVMESTSD---GF 748 Query: 944 ALATHDLEIRGAGELLGEEQSGSMETIGFSL--YMELLENAVDALKAGREPSLEDLTSQQ 1001 +A DLEIRG G+ LG Q+G + ++ +LE A + E + + Sbjct: 749 RIAEADLEIRGPGDFLGTRQAGLPDFRVANILRDGRILEEARMEAFSFVEKDRGLVAPEN 808 Query: 1002 T 1002 Sbjct: 809 A 809 >UniRef50_B8E2R9 ATP-dependent DNA helicase RecG n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E2R9_DICTD Length = 779 Score = 557 bits (1435), Expect = e-156, Method: Composition-based stats. Identities = 178/572 (31%), Positives = 285/572 (49%), Gaps = 29/572 (5%) Query: 447 SDLLGERVARRRQDSRRTINPDTLIRNLAE----LHIGQ--PVVHLEHGVGRYAGMTTLE 500 ++LL A+R NP+ + E L++G+ P+ L G+ + + + Sbjct: 199 TELLISGEAKRLLKHIEFENPEYETLDEGEDKEFLNVGRIVPIYSLTSGLTQ-KVLRKII 257 Query: 501 AGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEK 560 +T + L D +L+ + E++ P L + +++ E+ Sbjct: 258 YDALTDYSIFLE---DPLPKYLREKYNLMDKPVSVWEKHFPTSFLTMAS--ASKRITFEE 312 Query: 561 VRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPL 620 + + L + F E + F S PF+ T Q + + D+ Sbjct: 313 LFFLQLNLAKKRREIEELSAPVFNIQSELVEKFLGSLPFKLTKAQEKVWEEIKKDLSSGR 372 Query: 621 AMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRI 680 M RL+ GDVG GKT +A A LA DN Q A +VPT +LA+QHY+ ++ F ++I Sbjct: 373 PMHRLLQGDVGSGKTVIAALATILAYDNGYQTAFMVPTEILAEQHYNRLKNIFEPLGIKI 432 Query: 681 EMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE 740 +++ KE+T I ++AEGK+ ++IGTH L+Q +V FK LGL+I+DE+HRFGV + Sbjct: 433 ALLTSSTPKKEKTYIYLDLAEGKLPVVIGTHALIQEEVTFKKLGLVIIDEQHRFGVIQRA 492 Query: 741 RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV-REYDSMVVR 799 ++ +L +TATPIPR+L + + G D+SII P R V T++ + + V Sbjct: 493 KLWKKGEAPHLLVMTATPIPRSLALVLYGELDISIIDELPPGRKPVITYLFSKKERRKVY 552 Query: 800 EAILREILRGGQVYYLYNDVENIQ--------KAAERLAELVPEARIAIGHGQMRERELE 851 + +EI +G Q + + +E + K E L + P I + HG + E Sbjct: 553 SFVEKEIEKGKQAFVVCPLIEESEKLEAESAKKLYEELKKFFPRFNIGLIHGLVPREERT 612 Query: 852 RVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAY 911 R+M +F +LV TT+IE G+DIP A+ ++IE AD FGLAQLHQLRGRVGR Q+Y Sbjct: 613 RIMEEFQKGEIQILVATTVIEVGVDIPNASIMVIENADRFGLAQLHQLRGRVGRGSEQSY 672 Query: 912 AWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIG 971 +L+ +A++RL+ + D GF +A DLEIRG GE G +Q G+++ + Sbjct: 673 CFLIADLK---GENAKERLKVMVETND---GFVIANKDLEIRGPGEFFGTKQHGTLDVLF 726 Query: 972 FSL--YMELLENAVDALKAGREPSLEDLTSQQ 1001 L M+L E A + + E + + Sbjct: 727 VDLTKDMKLFEIARNEAFEVIKNQNERIEEYE 758 >UniRef50_B5Y798 ATP-dependent DNA helicase RecG n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y798_COPPD Length = 793 Score = 554 bits (1427), Expect = e-155, Method: Composition-based stats. Identities = 179/497 (36%), Positives = 265/497 (53%), Gaps = 30/497 (6%) Query: 532 YAGGAEENAPLHKL-GGDAWSRARQK-AAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQ 589 + + LH+ + +AR + A ++ + L +G +F+ +R+ Sbjct: 293 FLSYPDAVEKLHRPENQAQFEKARSEIAYREIFVLQVLLALRKKVIGQAQGISFRVERDW 352 Query: 590 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH 649 + PF T Q + I +L+DM + M+RL+ GDVG GKT VAM A F+A N Sbjct: 353 IEELERKLPFTLTNAQKRVILEILNDMQKSKPMNRLLQGDVGSGKTVVAMFAMFVAAKNG 412 Query: 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIG 709 KQ AV+VPT +LA QHY F + +R+ ++ SA E++++ + G++DI++G Sbjct: 413 KQSAVMVPTEVLAFQHYMVFSQWAEQFGLRVGLLVGSLSASEKSKVKRYLKSGQLDIVVG 472 Query: 710 THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKA--MRANVDILTLTATPIPRTLNMAM 767 TH L+Q D FKDLGL+I+DE+HRFGV + + + D+L ++ATPIPRTL + Sbjct: 473 THALIQEDTSFKDLGLVIIDEQHRFGVYQRAALISMDKSKQPDVLVMSATPIPRTLVLTY 532 Query: 768 SGMRDLSIIATPPARRLAVKTF-VREYDSMVVREAILREILRGGQVYYLYNDVENIQKA- 825 G D+S+I P R VKTF V E V EA+ RE+ G Q Y + +E + Sbjct: 533 YGDLDVSVIDELPPNRKPVKTFWVSEKRRSSVYEAVKRELDEGRQAYVVAPLIEESESIE 592 Query: 826 --------AERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDI 877 E + + + ++ + HG+M + E + VM++F VLV TT+IE G+D+ Sbjct: 593 AAAATSLYEELCSTFLKDYKVGLLHGKMNKEEKKNVMDEFRKGSLQVLVSTTVIEVGVDV 652 Query: 878 PTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLE 937 P A ++IE AD FGL+QLHQLRGRV RS +QAY +L+ T +A +RLE++ Sbjct: 653 PNATVMVIEGADRFGLSQLHQLRGRVVRSSYQAYCYLIANAK---TQEAVERLESMVKYS 709 Query: 938 DLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSL--YMELLENAVDALKAGREPSLE 995 D GFALA DL +RG GEL+GE Q G L M++LE A E Sbjct: 710 D---GFALAEKDLLLRGPGELMGERQHGFSGMRVADLIKDMKMLEPARQDA--------E 758 Query: 996 DLTSQQTEVELRMPSLL 1012 L S+ +E S L Sbjct: 759 RLVSEDPNLERPSSSFL 775 >UniRef50_Q1D6X0 ATP-dependent DNA helicase RecG n=9 Tax=Bacteria RepID=Q1D6X0_MYXXD Length = 669 Score = 552 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 180/543 (33%), Positives = 281/543 (51%), Gaps = 34/543 (6%) Query: 484 VHLEHGVGRYAGMTTLEAGGITGEYLML------TYANDAKLYVPVS---SLHLIS---- 530 VH V Y G G + L YA++ +P L L+ Sbjct: 115 VHFNRIVPVYPGFER----GEQRSFRELTSRVGEQYAHELDDPLPADLRRRLDLMGLPDA 170 Query: 531 -RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQ 589 R+ +A L L R+ A +++ + + A+ G +F + Sbjct: 171 LRFIHFPPGDADLEALDAHQSPAHRRLAFDELFFLQLGMALKRQGVKAEVGISFDVSEPR 230 Query: 590 YQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH 649 ++ PF+ T QA+ + + DM +P M+RLV GDVG GKT VAM +A +A+ Sbjct: 231 LAKARNALPFQLTGAQARVVEELCWDMARPEPMNRLVQGDVGSGKTAVAMVSALIALQAG 290 Query: 650 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIG 709 QVAV+ PT +LA+QH NFR R+ ++S +AK + Q+ VA G++ + +G Sbjct: 291 YQVAVMAPTEILAEQHERNFRKVMEPLGYRVGLVSAAGTAKAKRQVREAVARGEVHLAVG 350 Query: 710 THKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSG 769 TH LLQ+DV F LGL+++DE+HRFGV + + + D+L +TATPIPRTL M + G Sbjct: 351 THALLQADVSFDRLGLVVIDEQHRFGVLQRHTLMSKGPKPDVLVMTATPIPRTLAMTLYG 410 Query: 770 MRDLSIIATPPARRLAVKTFV-REYDSMVVREAILREILRGGQVYYLYNDVENIQKA--- 825 DLS+I P R ++T V + +V E++ ++ +G Q Y +Y VE +K Sbjct: 411 DLDLSVIDQLPPGRTPIQTRVFNDKQRALVYESVGAQLAKGHQAYVVYPLVEESEKLDLE 470 Query: 826 -----AERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTA 880 E+L ++ P+A++ + HG+M+ E + VM DF +R ++LVCTT++E G+D+P A Sbjct: 471 DATRGVEKLRKVFPDAKVGLLHGRMKAEEKDSVMEDFREKRLHLLVCTTVVEVGVDVPNA 530 Query: 881 NTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLG 940 + +++E A+ FGL+QLHQLRGRVGR ++ L+ + + ++ +RL + D Sbjct: 531 SVMVVESAERFGLSQLHQLRGRVGRGAAASFCHLVAGSAR--SWESAERLTVMEQSSD-- 586 Query: 941 AGFALATHDLEIRGAGELLGEEQSGSMETIGFSL--YMELLENAVDALKAGREPSLEDLT 998 GF +A DLEIRG GE LG QSG E +L +LL A + E + Sbjct: 587 -GFVIAEKDLEIRGPGEFLGTRQSGLPELAVANLARDGDLLSMAQSEARRILEKDPDMKA 645 Query: 999 SQQ 1001 + Sbjct: 646 KEN 648 >UniRef50_B5YEA4 ATP-dependent DNA helicase RecG n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YEA4_DICT6 Length = 778 Score = 551 bits (1421), Expect = e-155, Method: Composition-based stats. Identities = 185/571 (32%), Positives = 292/571 (51%), Gaps = 28/571 (4%) Query: 447 SDLLGERVARRRQDSRRTINPDTLIRNLAE---LHIGQ--PVVHLEHGVGRYAGMTTLEA 501 +D+L +R NP+ + + + L++G+ P+ L G+ + + + Sbjct: 199 TDVLISGEVKRVLKHIEFENPEYEVLDEEDKEFLNVGRIVPIYSLTSGLTQ-KVLRKIIY 257 Query: 502 GGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKV 561 +T + L D +L+ + E++ P L + +++ A E++ Sbjct: 258 DALTDYSIFLE---DPLPKYLREKYNLMDKPVSIWEKHFPTSFLTMAS--ASKRIAFEEL 312 Query: 562 RDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLA 621 + L + + FK D E + F +S PF+ T Q + + D+ Sbjct: 313 FFLQLNLAEKRKEIEKLSAPVFKTDSELVERFLNSLPFKLTKAQEKVWEEIKKDLSSGRP 372 Query: 622 MDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIE 681 M RL+ GDVG GKT +A AA LA DN Q A +VPT +LA+QHY+ + F +RI Sbjct: 373 MHRLLQGDVGSGKTVIAALAAILAYDNGYQTAFMVPTEILAEQHYNRLKKIFEPLGIRIA 432 Query: 682 MISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKER 741 +++ KE+T I ++AEGK+ I+IGTH L+Q +V FK LGL+I+DE+HRFGV + + Sbjct: 433 LLTSSTPKKEKTYIYLDLAEGKLPIVIGTHALIQEEVTFKKLGLVIIDEQHRFGVIQRAK 492 Query: 742 IKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV-REYDSMVVRE 800 + N +L +TATPIPR+L + + G D+SII P R V T++ + + V Sbjct: 493 LWKKGENPHLLVMTATPIPRSLALVLYGELDISIIDELPPGRKPVITYLFSKRERKKVYS 552 Query: 801 AILREILRGGQVYYLYNDVENIQ--------KAAERLAELVPEARIAIGHGQMRERELER 852 + +EI++G Q + + +E + K E L + P+ +I + HG + E R Sbjct: 553 FVEKEIMKGKQAFVVCPLIEESEKLEAESAKKLYEELKKFFPQFKIGLIHGLVPSEERNR 612 Query: 853 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYA 912 +M +F + +LV TT+IE G+DIP A+ ++IE A FGLAQLHQLRGRVGR QAY Sbjct: 613 IMEEFQNGEIQILVATTVIEVGVDIPNASIMVIEDAHRFGLAQLHQLRGRVGRGSEQAYC 672 Query: 913 WLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF 972 +L+ DA +RL+ + D GF +A DLEIRG GE G Q G++ ++ Sbjct: 673 FLIADLK---GEDATERLKVMVETND---GFVIANKDLEIRGPGEFFGTRQHGALNSLIV 726 Query: 973 SL--YMELLENAVDALKAGREPSLEDLTSQQ 1001 L M+L E A + E L+ + Sbjct: 727 DLTKDMKLFEIARNEAFELMRYENERLSEYE 757 >UniRef50_C9RAM3 ATP-dependent DNA helicase RecG n=2 Tax=Clostridia RepID=C9RAM3_AMMDK Length = 685 Score = 547 bits (1409), Expect = e-153, Method: Composition-based stats. Identities = 170/477 (35%), Positives = 252/477 (52%), Gaps = 22/477 (4%) Query: 551 SRARQKAAEKVRDVAAELLDIYAQRA-AKEGFAFKHDREQYQLFCDSFPFETTPDQAQAI 609 ++ E++ + L A A++ + + D Q F S PF TP Q +A Sbjct: 210 EARKRLVLEELFLLQLALGQRRRHLASAQKPYPCRPDGPLVQQFLASLPFTLTPAQERAW 269 Query: 610 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 669 + DM P M RL+ GDVG GKT VA A AV+N Q A++ PT +LA+QH+ N Sbjct: 270 REISRDMESPRPMHRLLQGDVGAGKTVVAALALVKAVENGLQGALMAPTEILAEQHFLNL 329 Query: 670 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 729 +++ +++ + + + +A +A G ID++IGTH L+Q +V F LGL+++D Sbjct: 330 HPLLEKIGIKVGLLTGNLKKELRWRQIAAIARGDIDVVIGTHTLIQEEVSFHRLGLVVID 389 Query: 730 EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKT- 788 E+HRFGVR + ++ D+L +TATPIPRTL + + G DLS+I + P R VKT Sbjct: 390 EQHRFGVRQRTILRRKGEAPDVLVMTATPIPRTLALTLYGDLDLSVIDSLPPGRQPVKTI 449 Query: 789 FVREYDSMVVREAILREILRGGQVYYLYNDVENIQK--------AAERLAELVPEARIAI 840 +++ V I +E +G Q +++ +E ++ AE L + PE +I + Sbjct: 450 WIKPSALPRVYNFIRQEAAQGNQAFFVCPLIEESEELNAQAASKLAEELKKFFPEFQIGL 509 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 HG+++ E ERVM F +LV T+++E G+D+P A ++I AD FGLAQLHQLR Sbjct: 510 LHGRLKLEEKERVMAAFRSGEIKLLVTTSVVEVGVDVPNATVMVIYDADRFGLAQLHQLR 569 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGRS +Y L+ +T +AQ RL+A +L GFALA DL IRG GE G Sbjct: 570 GRVGRSDKPSYCILVA---DKVTPEAQARLKA---FTNLRDGFALAEEDLRIRGPGEFFG 623 Query: 961 EEQSGSMETIGFSL--YMELL----ENAVDALKAGREPSLEDLTSQQTEVELRMPSL 1011 QSG E L +LL E A L+ S + E+ LR + Sbjct: 624 TRQSGLPELKVADLLRDHQLLPLAREEAWRFLEKDPSLSSPLGRILRQEIALRFAAF 680 >UniRef50_C5CH96 ATP-dependent DNA helicase RecG n=2 Tax=Thermotogaceae RepID=C5CH96_KOSOT Length = 787 Score = 546 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 208/782 (26%), Positives = 344/782 (43%), Gaps = 50/782 (6%) Query: 258 EYWQPLFFSEPLPP--LFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMRPLL 315 E F S + L L+ +L SA D + +F + + L Sbjct: 11 EKLLEKFLSGKVDTIELIQEIKRGAELLEPEEL--SANEGLKDYIGKFVSYYLPLAS--L 66 Query: 316 PPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAA----NANLGFQKLPDLAVQAQQKAPL 371 P + LRV F+ + L T + +A ++L F V ++ L Sbjct: 67 PNERQHLRVKNGFTMINKLRGKFLLTSFDESTSAIPVKVSSLNFDIKYAKGVGERRAKIL 126 Query: 372 DAL-RKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMI-GA 429 L + ++ + E R L ++A K+ + ++ Y++I Sbjct: 127 KKLGIETVKDLLWWLPRDYEDRRRIVPLSSIVADRKVTIRAKLQNFSVKKVKEYVIISAV 186 Query: 430 AEHGFVDTVRNLA---LICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQ----- 481 GF + I + + + P + E G+ Sbjct: 187 VSDGFGQIILKWFNQEYITDRLIKEREYLITGIPKKTPFGPYEMNSPEIEEITGRVPREI 246 Query: 482 -PVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 P+ L G+ + M + IT L+ + + +L+ R+ + Sbjct: 247 LPLYSLSAGISQ-KVMRKIVRKNITNVRLLKEFIPAEV----IKERNLLPRHHAMYTVHF 301 Query: 541 P--LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEG-FAFKHDREQYQLFCDSF 597 P L++L R+ A E++ +L + +G + + + F DS Sbjct: 302 PKSLYELKES----RRRLAYEELFLFEVAVLYNREKLKTTKGGISKSISGKLAERFIDSL 357 Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 F T DQ +A + DM P M+RL+ GDVG GKT VA A + Q A++VP Sbjct: 358 NFVLTGDQMRAFEEIREDMKAPTPMNRLLQGDVGSGKTVVAELAIIDNFEAGYQSAMMVP 417 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 TT+LA Q + +++E++ + +Q +I +A G++D+++GTH L+Q + Sbjct: 418 TTVLATQQHQKLVKDLEPLGIKVELLVGSQKKSQQEEIKKRIAIGEVDVVVGTHALIQEN 477 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 VKFKDLGL+I+DE+HRFGV+ +E + A VD L +TATPIPRTL + G D+S I Sbjct: 478 VKFKDLGLVIIDEQHRFGVKQREALMNKGALVDTLVMTATPIPRTLALTAYGDLDISTIT 537 Query: 778 TPPARRLAVKT-FVREYDSMVVREAILREILRGGQVYYLYNDVENIQKA--------AER 828 P R ++T + E + I E+ G Q +++Y +E ++ AER Sbjct: 538 EMPPGRAPIRTMLISEKRLPELYAFIRDEVNHGHQAFFIYPLIEESEQMDLKAATDEAER 597 Query: 829 LA-ELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 L E+ P+ + + HG+M + E R+M+ F ++ +LV T+++E GIDIPTA ++IE Sbjct: 598 LQKEVFPDIGVELLHGRMSDEEKNRIMHRFKNKEAMILVSTSVVEVGIDIPTATVMVIEH 657 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 + FGLAQLHQLRGRVGRS ++Y L+ ++ +A RL A ++ GF LA Sbjct: 658 PERFGLAQLHQLRGRVGRSSLKSYCMLVLNS--NISGEALDRLRKFAGTQN---GFKLAE 712 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSL--YMELLENAVDALKAGREPSLEDLTSQQTEVE 1005 DL +RG GE +G Q G + + + ELL A + + + E Sbjct: 713 IDLSLRGPGEFMGTRQHGLPDFLVADIVKDSELLIMARNDAMELLKRDPNLEKHNRIIEE 772 Query: 1006 LR 1007 ++ Sbjct: 773 IK 774 >UniRef50_B5YJX3 ATP-dependent DNA helicase RecG n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJX3_THEYD Length = 690 Score = 544 bits (1402), Expect = e-153, Method: Composition-based stats. Identities = 163/484 (33%), Positives = 260/484 (53%), Gaps = 22/484 (4%) Query: 531 RYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQY 590 ++ NA + L ++ +++ + +L I R ++G +F + + Sbjct: 201 KFVHLPPNNADIKLLNEKTSDFHKRIIFDELFFLQLGILLIKQNRICEKGISFNPEGDLL 260 Query: 591 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK 650 + F ++ PF+ T Q + IN +L DM +P+ M+RL+ GDVG GKT VA+ A A++ Sbjct: 261 KKFLENLPFKLTSAQQKVINEILEDMKKPIPMNRLLQGDVGSGKTVVAVAAMLAAIECGY 320 Query: 651 QVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710 Q A++ PT +LA+QHY N P+ + + + + G ++++IGT Sbjct: 321 QAALMAPTEILAEQHYLNISSLLKGLPINTLIYTSS-----YNKHSNLICSGAVNLIIGT 375 Query: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGM 770 H L+Q D+ FK+LG++++DE+HRFGV + +K N D L +TATPIPRT+ + + G Sbjct: 376 HALIQEDIHFKNLGIVVIDEQHRFGVIQRAMLKKKGLNPDTLVMTATPIPRTMALTVYGD 435 Query: 771 RDLSIIATPPARRLAVKTFVRE-YDSMVVREAILREILRGGQVYYLYNDVENIQKA---- 825 D SI+ PA R + T V E + ++ + I E+ GGQVY +Y +E + Sbjct: 436 LDYSILDELPAGRKPILTKVIEPENKKIIYKMIAEEVSSGGQVYVVYPLIEESEAMDLKS 495 Query: 826 ----AERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 E L +L P+ ++A+ HG+M ++ E +M +F + ++LV TT+IE G+D+P A Sbjct: 496 ATQGYEGLKKLFPQYKVALIHGKMSAKQREEIMKEFRNGDIHILVATTVIEVGVDVPNAT 555 Query: 882 TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGA 941 +II A+ FGLAQLHQLRGRVGR + LL P +T +A+ RL AI + D Sbjct: 556 LMIIIHAERFGLAQLHQLRGRVGRGLRPSKCILL---PYKLTEEAKLRLRAIVNYSD--- 609 Query: 942 GFALATHDLEIRGAGELLGEEQSGSMETIGFSL--YMELLENAVDALKAGREPSLEDLTS 999 GF +A D++IRG GEL G +QSG + L LLE A + + + Sbjct: 610 GFKIAEEDMKIRGPGELFGVKQSGMPDLKVADLIKDQSLLEIARNEAEQLLQEDKNLSLH 669 Query: 1000 QQTE 1003 +T Sbjct: 670 PKTR 673 >UniRef50_Q6MKR1 ATP-dependent DNA helicase RecG n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MKR1_BDEBA Length = 701 Score = 544 bits (1401), Expect = e-152, Method: Composition-based stats. Identities = 163/522 (31%), Positives = 261/522 (50%), Gaps = 40/522 (7%) Query: 524 SSLHLISRYAGGAEENAPLHKLGGDAW-----SRARQKAAEKVRDVAAELLDIYAQRAAK 578 +LI R + + P + + ++ ++ + L A + Sbjct: 194 EKYNLIPRKDALKDIHFP-DPNKAKQYSEFKTAAQKRIIFDEFFWLELYLASKKAGFQKE 252 Query: 579 EGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVA 638 ++ E+ + S PFE T Q + + +D+ + M R+V GDVG GKT V+ Sbjct: 253 GAPQIRNSGEKMRALLQSLPFEMTGAQKRVFTEIKADLEKGHPMHRMVQGDVGSGKTLVS 312 Query: 639 MRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAE 698 AA A ++ Q ++ PT +LA+QH+ N R +R+ ++ A E+ Q+LA Sbjct: 313 FMAAIYAAESGYQSCLMAPTEILAEQHFKNARKVLEPLGIRLGLLVGKSKASERKQLLAA 372 Query: 699 VAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATP 758 + G+ID++IGTH L++ +V+F +LGL+I+DE+HRFGV + +K + L +TATP Sbjct: 373 LGAGEIDLIIGTHALIEDEVQFANLGLVIIDEQHRFGVEQRGVLKNKGNSPHFLVMTATP 432 Query: 759 IPRTLNMAMSGMRDLSIIATPPARRLAVKTFVR-EYDSMVVREAILREILRGGQVYYLYN 817 IPRTL M + G D+SII PA R ++T E + +L +I +G Q Y +Y Sbjct: 433 IPRTLAMTVYGDLDVSIIDEMPAGRSPIQTRATFESKRPQALQFMLEQIQKGRQAYIVYP 492 Query: 818 DVENIQKA--------AERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT 869 VE +K E+L EL P+ +I + HG+M+ E ++VM+ F VLV TT Sbjct: 493 LVEESEKIDLKDAVSEYEKLKELYPQLKIGLLHGKMKPDEKDQVMDQFRKNEIQVLVSTT 552 Query: 870 IIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKR 929 +IE G+D+P AN +IIE A+ FGL+QLHQLRGRVGR H+++ L+ A++ + + R Sbjct: 553 VIEVGVDVPNANIMIIEHAERFGLSQLHQLRGRVGRGEHKSFCILI--MGYAVSEEGKAR 610 Query: 930 LEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSL--YMELLENAVDALK 987 E + D GF +A DLE+RG GE +G +QSG +L M +L+ A +A Sbjct: 611 TEMMEKTTD---GFKIAEFDLEMRGPGEFMGTKQSGLSGFKLANLVRDMAILQEAREAAF 667 Query: 988 AGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKR 1029 ++ + + + Sbjct: 668 EVLRKDPRL------------------SYVENQGLKAELLRE 691 >UniRef50_D1BMY0 ATP-dependent DNA helicase RecG n=3 Tax=Veillonella RepID=D1BMY0_VEIPT Length = 680 Score = 543 bits (1399), Expect = e-152, Method: Composition-based stats. Identities = 179/641 (27%), Positives = 292/641 (45%), Gaps = 42/641 (6%) Query: 359 PDLAVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEA 418 P + + L+ + V +V+ + R L L ++ D Sbjct: 35 PRTYEDRRTMYRIGDLKSGMTGGVVGTVIAVQEKRPRPRLSIL---------EVVIADGT 85 Query: 419 SDRGRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELH 478 L + F + + +++ + + R + Sbjct: 86 GPLKIVLFNQGYKKNFYKKGQRIYAYGKAEFQYGTMQMNTPQMENLGDSGEPDRGIV--- 142 Query: 479 IGQPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPV-SSLHLISRYAGGAE 537 P+ L GV ++ + + L V V S H +SRY Sbjct: 143 ---PIYALADGVSQFV------VRSSVRNWFAANHELPEILPVEVRESHHYMSRYDAFKM 193 Query: 538 ENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSF 597 + P Q A E++ + A L + ++ G + E ++ Sbjct: 194 MHFPDSSEHYK--EARHQLAYEELFVMQAGLALLRSKEQCHRGPKMGPNGELMARCIENL 251 Query: 598 PFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVP 657 PF T DQ +A+ + DM M RL+ GDVG GKT VA A++N Q A++ P Sbjct: 252 PFSLTGDQQRALEDIRIDMEDERPMQRLLQGDVGSGKTIVATLGLLKAIENGYQGALMAP 311 Query: 658 TTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD 717 T +LA QHY+ R AN + IE+++ + KE+ I +A+G I ++IGTH L+Q + Sbjct: 312 TEILAAQHYEGIRTVCANLGITIELLTGSTTKKEKECIYEGLADGSIHMIIGTHALIQEN 371 Query: 718 VKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIA 777 V F +LGL+I+DE+HRFGV + R++ +L +TATPIPRT+ +++ G +S+I Sbjct: 372 VNFHNLGLVIIDEQHRFGVEQRARLQQKGTYPHVLIMTATPIPRTMTLSVYGDLAVSLIK 431 Query: 778 TPPARRLAVKTF-VREYDSMVVREAILREILRGGQVYYLYNDVENI--------QKAAER 828 P R VKT+ V + +E+ G QVY + VE ++ Sbjct: 432 EMPPGRKPVKTYAVDSSYKDRLCTFFGKEMAEGRQVYVVCPLVEESEKLDLQAAEELYLE 491 Query: 829 LAELVPEA-RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIER 887 L E +A + + HG+M+ E + VMN FH ++LV TT+IE G+++P A + +E Sbjct: 492 LKEYFYKAYEVGLVHGRMKPSEKDEVMNAFHKGEISLLVSTTVIEVGVNVPNATIMCVEG 551 Query: 888 ADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALAT 947 A+ FGL+QLHQLRGRVGR +Q+Y L++ +Q+RL+ + ++D GF LA Sbjct: 552 AERFGLSQLHQLRGRVGRGAYQSYCILVSDSKN---DVSQERLKLMEQIQD---GFELAE 605 Query: 948 HDLEIRGAGELLGEEQSGSMETIGFSL--YMELLENAVDAL 986 DL +RG+G+L G QSG + ++ +E+L A + Sbjct: 606 QDLLLRGSGQLFGLAQSGLPDLRVANIIKDIEILVEARKDV 646 >UniRef50_D1VSD3 ATP-dependent DNA helicase RecG n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSD3_9FIRM Length = 674 Score = 539 bits (1388), Expect = e-151, Method: Composition-based stats. Identities = 171/627 (27%), Positives = 301/627 (48%), Gaps = 42/627 (6%) Query: 387 FSVESEGRREALGELLARIKIAPQRIMRLDEASDRGRYLMIGAAEHGFVDTVRNLALICE 446 E R + LL + + D + + F+ +N E Sbjct: 53 IIGEKSTFRCRILSLLDNRNLRKGLSITSFLIEDDSAEAKLIFFNNRFI---KNTIDFGE 109 Query: 447 SDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAGM--TTLEAGGI 504 + L+ + R R + T + N+ L GR G+ T Sbjct: 110 TYLIYGKYERFRGRIQLTSPEIEKVDNIRNL-------------GRIRGIYNQTKGLTNN 156 Query: 505 TGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP--LHKL-GGDAWSRARQKA-AEK 560 +YL + D L+ LI +Y+ + A +H+ +++ ++Q+ E+ Sbjct: 157 NIDYL-IDQVIDKNLFEECIPNDLIKKYSLIDKNKAIKNIHRPENRKSYALSKQRLIYEE 215 Query: 561 VRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPL 620 + +L + + + G F + Y F ++ P++ T Q + + + DM Sbjct: 216 LLFFELSILSMQNKNNSSHGIKFNIPNKIY-EFINNLPYKLTSGQEKVLKDITGDMQNGK 274 Query: 621 AMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRI 680 +++RL+ GDVG GKT V++ + +AV N Q A++ PT +LA+QH++NF ++ VRI Sbjct: 275 SVNRLIQGDVGSGKTIVSIILSLVAVLNGYQCAIMAPTEILAKQHFENFNSLLEDYGVRI 334 Query: 681 EMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKE 740 +++ +K + +IL A G IDILIGTH L++ DVKF +LGL ++DE+HRFGV + Sbjct: 335 KLLVGSTPSKVKKEILTNTANGMIDILIGTHSLIEDDVKFFNLGLNVIDEQHRFGVIQRS 394 Query: 741 RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF-VREYDSMVVR 799 +++ + ++ATPIPRTL++ + D+SII T P R +KT + Sbjct: 395 KLRYKNDKACNIIMSATPIPRTLSLILYADLDISIIDTMPGGRKNIKTLAINSSQVNEAL 454 Query: 800 EAILREILRGGQVYYLYNDV---------ENIQKAAERLAELVPEARIAIGHGQMREREL 850 I +E+ G Q Y + + + E+++K + L + ++A+ HG++ E Sbjct: 455 TFIEKELNAGHQAYVICSLIEDNEDFENLESVEKVFKDLKKFFKNYKLALLHGRLSTDEK 514 Query: 851 ERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA 910 +VM DF +++ +++V TT+IE GI++ A ++I A+ FGL+ LHQLRGRVGR Q+ Sbjct: 515 NKVMEDFKNRKIDLIVSTTVIEVGINVANATVMMIYNAERFGLSTLHQLRGRVGRGDAQS 574 Query: 911 YAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETI 970 Y L + + + +R++ + D GF +A DLE+RG G++LG QSG Sbjct: 575 YCILF---NNSKSEISWRRMKIMTDSTD---GFYIANKDLELRGFGDILGVRQSGIPNLR 628 Query: 971 GFSL--YMELLENAVDALKAGREPSLE 995 + ++L A K + ++ Sbjct: 629 LANPLKDQKILSYASTDAKNILKEDID 655 >UniRef50_Q55681 ATP-dependent DNA helicase recG n=5 Tax=Cyanobacteria RepID=RECG_SYNY3 Length = 831 Score = 538 bits (1386), Expect = e-151, Method: Composition-based stats. Identities = 153/468 (32%), Positives = 251/468 (53%), Gaps = 19/468 (4%) Query: 552 RARQKAAEKVRDVAA-ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 R+ ++ + L Y Q+ ++ F E + F D PF T Q + +N Sbjct: 356 ARRRLVFDEFFYLQLGFLQRRYEQKQQQQSAIFTPHGELLEKFSDLLPFRLTQAQQRVVN 415 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 +L D+ +P M+RLV GDVG GKT V + A A+ Q A++ PT +LA+QHY Sbjct: 416 EILQDLNKPSPMNRLVQGDVGSGKTVVGVFAILAALQGGYQAALMAPTEVLAEQHYQKLV 475 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 F + +E+++ ++ +I A+++ G++ +L+GTH L+Q V F+ LGL+++DE Sbjct: 476 SWFNLLYLPVELLTGSTKTAKRREIHAQLSTGQLPLLVGTHALIQETVNFQRLGLVVIDE 535 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFV 790 +HRFGV+ + ++ A +L++TATPIPRTL + + G ++S I P R + T V Sbjct: 536 QHRFGVQQRAKLLAKGNAPHVLSMTATPIPRTLALTLHGDLEVSQIDELPPGRQPIHTSV 595 Query: 791 RE-YDSMVVREAILREILRGGQVYYLYNDVEN---------IQKAAERLAELVPEARIAI 840 + + E I RE+ +G QVY ++ +E +++ ++ P I + Sbjct: 596 ITAKERPQMYELIRREVAQGRQVYIIFPAIEESEKLDIKAAVEEHKYLTEKIFPNFNIGL 655 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 HG+++ E E + F ++ ++V TT+IE G+D+P A ++IE A+ FGL+QLHQLR Sbjct: 656 LHGRLKSAEKEAALTAFREKQTEIIVSTTVIEVGVDVPNATVMVIENAERFGLSQLHQLR 715 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGR HQ+Y L+T + DA++RL + +D GF +A DL +RG GE LG Sbjct: 716 GRVGRGSHQSYCLLVTNSK---SNDARQRLGVMEQSQD---GFFIAEMDLRLRGPGEFLG 769 Query: 961 EEQSGSMETIGFSL--YMELLENAVDALKAGREPSLEDLTSQQTEVEL 1006 +QSG + SL E+L A +A + +++L Sbjct: 770 TKQSGLPDFALASLVEDQEVLLLAREAAETMMVEDPNLEAHPDLKIKL 817 >UniRef50_B0VFU3 ATP-dependent DNA helicase RecG n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFU3_9BACT Length = 699 Score = 537 bits (1383), Expect = e-150, Method: Composition-based stats. Identities = 164/490 (33%), Positives = 245/490 (50%), Gaps = 29/490 (5%) Query: 553 ARQKAAEKVRDVAAELLDIYA-QRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINA 611 R+ A E +G F + ++ PF T Q + + Sbjct: 224 RRRFAYEDFFYTQLLWARHKTFHTTKTKGIKFINKKQLTTGVYKKLPFTLTKAQKKVLWE 283 Query: 612 VLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRD 671 + +DMC M RL+ GDVG GKT V + A LAV+N Q A++ PT +LA+QHY+ + Sbjct: 284 IFADMCSEKQMSRLLQGDVGSGKTVVTLFAMLLAVENGYQSALMAPTEILAEQHYETITN 343 Query: 672 RFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEE 731 + V++ ++ K + I +AEG I+IGTH LLQ D+ FK LG VDE+ Sbjct: 344 LLKGFEVQVCLLKGGV-YKGKEAIKKAIAEGSAQIVIGTHALLQKDINFKRLGFACVDEQ 402 Query: 732 HRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVR 791 HRFGV + ++ + + D+L L+ATPIPR+L M + G ++SI+ P R V+T +R Sbjct: 403 HRFGVEQRAKLANLAEHPDLLYLSATPIPRSLAMTVYGDLEVSILDELPPTRKPVRTIIR 462 Query: 792 EYDS-MVVREAILREILRGGQVYYLYNDVENIQKAA--------ERL-AELVPEARIAIG 841 V + +E+ G QVY + VE +K A E + ++ PE ++ Sbjct: 463 PSSKIDTVYSEVRQELALGRQVYIVCPLVEESEKIALLDATKLYEYISQKVFPEYPASLL 522 Query: 842 HGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRG 901 HG+M +E + +M F +LV TT+IE G+D+P A+ +I+E A+ FGLAQLHQLRG Sbjct: 523 HGRMPVKEKDMIMQKFKAGEIKILVSTTVIEVGVDVPNASVMIVEHAERFGLAQLHQLRG 582 Query: 902 RVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGE 961 RVGR QAY +L+ P ++ A +RL + D GF +A DLE+RG GE+ G Sbjct: 583 RVGRGSAQAYCYLIEHSP--VSEVAWQRLTTMTKTTD---GFIIAEKDLELRGPGEIFGY 637 Query: 962 EQSGSMETIGFSL--YMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPD 1019 EQSG +L E+L A ++ + EL +LL + Sbjct: 638 EQSGLPVFRFANLVRDQEILRLARQDA--------FEIVHADPDFELPENALLKKIYFSQ 689 Query: 1020 --VNTRLSFY 1027 +L Y Sbjct: 690 FTDKEKLILY 699 >UniRef50_A3DEY1 ATP-dependent DNA helicase RecG n=25 Tax=Clostridia RepID=A3DEY1_CLOTH Length = 694 Score = 536 bits (1382), Expect = e-150, Method: Composition-based stats. Identities = 158/454 (34%), Positives = 251/454 (55%), Gaps = 18/454 (3%) Query: 578 KEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEV 637 KEG AF +R++ F +S F T Q + + DM M+RLV GDVG GKT V Sbjct: 244 KEGIAFAPNRKEMVDFINSIGFTLTNAQKRVWEEIEKDMESNRVMNRLVQGDVGSGKTIV 303 Query: 638 AMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILA 697 A A AV + Q A++VPT +LA+QHY++ +D + + ++ ++ K++++IL+ Sbjct: 304 AALALAKAVKSGYQGAMMVPTEILAKQHYESLKDIMGKHGINVALLVGSQTKKQRSEILS 363 Query: 698 EVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTAT 757 ++ G+++I+IGTH L++ VKF LGL+I DE+HRFGVR + + N DIL +TAT Sbjct: 364 KIESGEVNIVIGTHALIEEKVKFSKLGLVITDEQHRFGVRQRAMLSNKGINPDILVMTAT 423 Query: 758 PIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYD-SMVVREAILREILRGGQVYYLY 816 PIPRTL + + G D+SII P R VKT+ + + I ++IL G Q Y + Sbjct: 424 PIPRTLALILYGDLDISIIDELPPGRKPVKTYAVDNSMRQRINNFIKKQILEGRQAYIIC 483 Query: 817 NDVENIQKA--------AERL-AELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 V+ + AE++ E + R+ + HG+M E E VM F ++LV Sbjct: 484 PLVDESDEIEAKSALKTAEKIAKEDFKDFRVGLLHGKMPAGEKEEVMQKFLKGEIDILVS 543 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 TT++E G+++P A +++E A+ FGLAQLHQLRGRVGR HQ+Y L ++ + A+ Sbjct: 544 TTVVEVGVNVPNATLMVVENAERFGLAQLHQLRGRVGRGPHQSYCILY---NESKSQIAK 600 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALK 987 +R++ + D GF ++ DL IRG GE G Q G + +LY ++ + + Sbjct: 601 ERMKVMQETTD---GFVISEKDLLIRGPGEFFGTRQHGLPDLKIANLYRDM--EILKKAQ 655 Query: 988 AGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVN 1021 + L+ + E L++ + + FI ++ Sbjct: 656 EAAQEILKRDRNLFMEENLKLKEKIAEKFIEKIH 689 >UniRef50_D1CCP1 ATP-dependent DNA helicase RecG n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CCP1_THET1 Length = 786 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 161/466 (34%), Positives = 238/466 (51%), Gaps = 21/466 (4%) Query: 551 SRARQKAAEKVRDVAA-ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAI 609 + R+ A ++ ++ L+ +R +K A + Q F + PF T Q + I Sbjct: 311 AARRRLAFDEFLEIQLGALMKQAVRRRSKGALALDVRKPQIGEFLTNLPFRLTGAQERVI 370 Query: 610 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 669 ++ D+ + M+RL+ GDVG GKT VA A A N Q A++ PT +LA+QHY Sbjct: 371 QEIMHDLESDVPMNRLLQGDVGSGKTVVAASALITAFANGYQGAIMAPTEILAEQHYKGI 430 Query: 670 RDR---FANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 ++ +++ KE+ + V +G+IDILIGTH L+Q V+F +L + Sbjct: 431 SRLVSVLGEDAPKVSLLTGSIKGKERDDLYQAVEQGEIDILIGTHALIQEGVRFNNLAVC 490 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 +VDE+HRFGV + ++A N +L +TATPIPR+L + + G DLS++ P R + Sbjct: 491 VVDEQHRFGVEQRAALRAKGVNPHLLVMTATPIPRSLALTIYGDLDLSVLDEMPPGRQPI 550 Query: 787 KTF-VREYDSMVVREAILREILRGGQVYYLYNDVENIQKA--------AERLAEL-VPEA 836 +TF + + E+ RG Q Y + VE +K ERL + P+ Sbjct: 551 QTFALTPEQRSWAYNFLREEVERGRQAYIICPLVEESEKIEAKAAIEEYERLQKYVFPDL 610 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 R+ + HG+M+ RE + VM F VLV T ++E GID+P A ++IE AD FGLAQL Sbjct: 611 RLGLLHGRMKPREKDEVMERFRLGELQVLVSTAVVEVGIDVPNATVMLIEGADRFGLAQL 670 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 HQ RGRVGR ++Y LL+ P + DA+KRLE + D GF LA DL++RG G Sbjct: 671 HQFRGRVGRGTEKSYCLLLSDSP---SEDARKRLEIVQECSD---GFVLAEEDLKMRGPG 724 Query: 957 ELLGEEQSGSMETIGFSL-YMELLENAVDALKAGREPSLEDLTSQQ 1001 E G QSG + L LLE E + + Sbjct: 725 EFYGIRQSGQINLKVAKLSDFGLLEETRKIAAELLEDDPDLRHYPK 770 >UniRef50_C6VPY9 ATP-dependent DNA helicase RecG n=34 Tax=Bacteria RepID=C6VPY9_LACPJ Length = 679 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 152/474 (32%), Positives = 236/474 (49%), Gaps = 20/474 (4%) Query: 525 SLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFK 584 L+ R + + P + A R E+ ++ + A G A Sbjct: 181 KYRLLPRRQMIHDMHFPASQADSTA--ARRSATYEEFLLFQMQMQVLKQTDATTNGIAIA 238 Query: 585 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFL 644 +D ++ + F + PFE T Q + +N + D+ P M+RL+ GDVG GKT VA + Sbjct: 239 YDNDRLKAFIKTLPFELTHAQKRVVNEICLDLKSPKHMNRLLQGDVGSGKTIVAAIVMYA 298 Query: 645 AVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKI 704 A+ Q A++ PT +LA+QH +N FA+ V + +++ + +LA +A G+I Sbjct: 299 AITAGYQAALMAPTEILAEQHANNLAQVFADTDVNVALLTGATKPAARKTLLAALAAGEI 358 Query: 705 DILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLN 764 ++LIGTH L+Q V + +LGL+I DE+HRFGV + + D L +TATPIPRTL Sbjct: 359 NLLIGTHALIQDGVTYANLGLVITDEQHRFGVNQRAAFRQKGGQPDALAMTATPIPRTLA 418 Query: 765 MAMSGMRDLSIIATPPARRLAVK-TFVREYDSMVVREAILREILRGGQVYYLYNDVENI- 822 + G D+S I PA R ++ T+VR + + ++I G Q Y + +E Sbjct: 419 ITAYGEMDVSEIDELPAGRQPIQTTWVRSNQANSALSFVHQQIDNGSQAYVVTPLIEESE 478 Query: 823 -------QKAAERLAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG 874 + + L E ++ + HG+M+ E + VM F +LV TT+IE G Sbjct: 479 TLDVKNAEALSANLQEYFGASVKVGLLHGRMKPEEKDAVMAAFKAGDIQLLVSTTVIEVG 538 Query: 875 IDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIA 934 +D+ A ++I AD FGLAQLHQLRGRVGR +Y L+ +R++ + Sbjct: 539 VDVKNATIMMIYDADRFGLAQLHQLRGRVGRGTKASYCILVADPKN---QQGIERMQIMT 595 Query: 935 SLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSL--YMELLENAVDAL 986 + GF LA DLE+RGAG++LG +QSG E + +L+ A Sbjct: 596 QTTN---GFVLAQKDLELRGAGDVLGVKQSGMPEFKVGDPIADLTVLQVAQQDA 646 >UniRef50_Q2S5W6 ATP-dependent DNA helicase RecG n=2 Tax=Rhodothermaceae RepID=Q2S5W6_SALRD Length = 700 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 160/482 (33%), Positives = 248/482 (51%), Gaps = 22/482 (4%) Query: 548 DAWSRARQKAA-EKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDS-FPFETTPDQ 605 SRAR++ E++ + L ++ Q+ G AF + F PFE T Q Sbjct: 217 QELSRARRRLKFEELFFIQLLLAQMHEQQEEVAGPAFDDPGAYTREFVREVLPFELTGAQ 276 Query: 606 AQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQH 665 +A+ ++ D+ M+RL+ GDVG GKT VA+ A A D+ Q A + PT +LA+QH Sbjct: 277 TRALREIIGDVQTGTQMNRLLQGDVGSGKTVVAVAAMMHAYDSGYQSAFMAPTEILAEQH 336 Query: 666 YDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 725 + N +D + ++ ++ E+ L V G + +GTH L+Q +V F LGL Sbjct: 337 HANLQDYLQPLGLEPRLLIGSQTKAEREAALQAVRSGASPVAVGTHALIQDEVAFDRLGL 396 Query: 726 LIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLA 785 +VDE+HRFGV + + +L +TATPIPR+L + + G D+S I P R Sbjct: 397 AVVDEQHRFGVAQRAEMFEKGERPHMLLMTATPIPRSLALTLYGDLDVSKIDEMPPGRKP 456 Query: 786 VKTFVR-EYDSMVVREAILREILRGGQVYYLYNDVENIQKA--------AERLAELVPEA 836 V+T +R E V + + +G Q + +Y VE +K A+ L E P+ Sbjct: 457 VETRLRAEKRRGEVYAFLNDRLEQGEQAFVVYPLVEESEKMDLKDAESGAQELQEKFPDY 516 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 + + HGQ+ + + M F ++LV TT+IE G+D+P A +++E A+ FGL+QL Sbjct: 517 TVGLVHGQLSADDKDATMRRFKEGDIDLLVATTVIEVGVDVPNATVMLVEHAERFGLSQL 576 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 HQLRGRVGRS Q+Y L+ + + + +A++RLEA+A D GF ++ DL+IRGAG Sbjct: 577 HQLRGRVGRSDQQSYCVLMASYKR--SQEAKQRLEAMARTND---GFEISETDLQIRGAG 631 Query: 957 ELLGEEQSGSMETIGFSL--YMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPD 1014 + G QSG + L E+LE A +A A E + + R + Sbjct: 632 DFFGTRQSGMPDLKIADLTEDDEILEVAREAAFALIEKDPHLRADEHERLRRRYQ----E 687 Query: 1015 DF 1016 D+ Sbjct: 688 DY 689 >UniRef50_C0BP78 Transcription factor CarD n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BP78_9BACT Length = 681 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 176/695 (25%), Positives = 309/695 (44%), Gaps = 72/695 (10%) Query: 15 EQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ-MVMNLADW 73 + L L G+A + + + P VLI D + A + +++ F + V+ Sbjct: 21 KTVYLNGLAGSALSFAITALFNESKVPFVLILEDKETAAYVLNDLESFIGEDRVLFYPAS 80 Query: 74 ETLPYDSFSPHQDIISSRLSTLYQL-PTMQRGVLIVPVNTLMQRVCPHSFLHGHALVMKK 132 PY I R L + + ++ + ++V L + L +K+ Sbjct: 81 YKKPYQHSQTDNANILLRAEVLQRFGKKGKPLCIVSYPEAIFEKVIQKKTLEKNTLNLKQ 140 Query: 133 GQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRLDFFDDEIDSL 192 G+ +S D L L G++ VD V GE++ RG ++D+F + PYR++FF +E++S+ Sbjct: 141 GELISLDFLNESLFEYGFKRVDFVSSPGEFSVRGGIVDVFSYAYDHPYRIEFFGEEVESI 200 Query: 193 RVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPEHIYQQVSKGT 252 R FD+ SQR++ + E I+++P DT ++D Sbjct: 201 RTFDIVSQRSIAKQEEISIIPNV--------------TQTDTLTKRQDF----------- 235 Query: 253 LPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLETSAERFQADTLARFENRGVDPMR 312 F++ + + G L+ E + + +F+ + + Sbjct: 236 ----------FSFTDKKTTVL--------IRKPGVLKQKIESLYKEAVLKFDTLEGEIAQ 277 Query: 313 PLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANAN-----------LGFQKLPDL 361 +PP++L+++ ELF L+ V L+++ + F+ Sbjct: 278 --IPPENLYVQSKELFGALEKHQCVFLESQPAEIAQLGIQKQQDSAENNILIDFKGTDQP 335 Query: 362 AVQAQQKAPLDALRKFLETFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDEASDR 421 A + ++ L + +F SE + + ++ + Sbjct: 336 AFNKKFPLIIERLAQNNLKGTNNYLF-CASEQQAKRFSDIFEAAEKEVPYKT-------- 386 Query: 422 GRYLMIGAAEHGFVDTVRNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHIGQ 481 ++ GF + +LA + ++ ER + + + L +L IG Sbjct: 387 ----VVLPIHRGFEIPLLHLACYTDHEIF-ERYHKFHIKNGFDKKEAISLSELNKLEIGD 441 Query: 482 PVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541 V H++HG+G++ G+ + G E + L+Y LYV + SLH I+++ G Sbjct: 442 YVTHIDHGIGKFGGLQKIAVEGKKQEAIKLSYGERDVLYVSIHSLHKIAKFNGKDGSPPK 501 Query: 542 LHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFET 601 ++KLG AW + ++K +V+ +A +L+ IYA+R ++GF + D SF +E Sbjct: 502 IYKLGSGAWKKVKEKTKSRVKKLAFDLIQIYAKRRLQKGFQYAADSSLQHELEASFLYED 561 Query: 602 TPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLL 661 TPDQ A + DM MDRL+CGDVGFGKTEVA+RAAF AVDN KQVA+LVPTT+L Sbjct: 562 TPDQLTATEDIKKDMESERPMDRLICGDVGFGKTEVAIRAAFKAVDNGKQVAILVPTTIL 621 Query: 662 AQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQIL 696 A QH++ R + PV ++ ++RFRS+KE+ I Sbjct: 622 AYQHFNTLTARLKDMPVSVDYLNRFRSSKEKKDIF 656 >UniRef50_C1SJP0 ATP-dependent DNA helicase RecG n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SJP0_9BACT Length = 761 Score = 534 bits (1375), Expect = e-149, Method: Composition-based stats. Identities = 159/500 (31%), Positives = 248/500 (49%), Gaps = 18/500 (3%) Query: 516 DAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQR 575 + K P S L+ + L L A++ E++ + LL Sbjct: 253 EEKYKFPSSKQALLEIHRPKNPYE--LEALSEKRHPAAKRFIYEELFYLQMGLLYKKRAY 310 Query: 576 AAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKT 635 + G F +E D PF+ T Q + + + +DM M+RLV GDVG GKT Sbjct: 311 ERQSGTVFDIKKEYLDWIKDLLPFKFTGAQRRVMAEIFNDMSSTGQMNRLVQGDVGSGKT 370 Query: 636 EVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQI 695 VA A +AV N QVAV+ PT +LA+QH N + V +++ S E+ Sbjct: 371 IVAFTAGLVAVKNGYQVAVIAPTEVLARQHMLNLLKLISGTNVTAVLLTGSVSGAEKKHT 430 Query: 696 LAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLT 755 +A G +D ++GTH ++Q D F LGL I+DE+HRFGV ++ + DIL +T Sbjct: 431 KELIAAGHVDFVLGTHAVIQEDADFAKLGLAIIDEQHRFGVEQRKSLIEKGYMPDILLMT 490 Query: 756 ATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYL 815 ATPIPRTL ++ G D+SII P R + T V E + V + EI +G VY + Sbjct: 491 ATPIPRTLALSFYGDLDISIIDELPPGRTPINT-VSEKNIERVYPLMREEIKKGHGVYVI 549 Query: 816 YNDVENIQ--------KAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVC 867 Y ++ + +L++ + + HG+M+ + +M+ F VLV Sbjct: 550 YPLIDTSEKLDLKAATDEHRKLSQEFGADNVGLLHGRMKHEQKSELMDAFKAGNIQVLVS 609 Query: 868 TTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQ 927 TT+IE G+D+P A ++IE A+ FGL+QLHQLRGRVGRS Q+Y L+ + ++ +A Sbjct: 610 TTVIEVGVDVPHATVMVIENAERFGLSQLHQLRGRVGRSDRQSYCVLVAS--ENVSDEAS 667 Query: 928 KRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSL--YMELLENAVDA 985 +R+ A+ + D GF L+ DLE+RG G+ G QSG E ++ + +L++A Sbjct: 668 ERINAMCAHAD---GFKLSEIDLEMRGPGDFFGTRQSGLPEFRFSNIVRDVRILQDARSD 724 Query: 986 LKAGREPSLEDLTSQQTEVE 1005 + + + T ++ Sbjct: 725 AADILSDDQDLSSPKNTVIK 744 >UniRef50_Q1PZ44 Similar to DNA helicase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZ44_9BACT Length = 686 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 167/513 (32%), Positives = 269/513 (52%), Gaps = 25/513 (4%) Query: 512 TYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDA---WSRAR-QKAAEKVRDVAAE 567 Y + L L LI +Y +A H + +RA+ + E++ + Sbjct: 171 EYVD---LLEDALPLPLIKKYNFLPVADAIRHIHSPPSMELLNRAKNRLVYEELFCLEMA 227 Query: 568 LLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVC 627 + + + FK + PF T Q + I + DM M+RL+ Sbjct: 228 MALRRYRIKGETRIPFKAGANVDAHIRNIIPFTLTKAQERVIYEIREDMKSDKPMNRLLQ 287 Query: 628 GDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFR 687 GDVG GKT VA+ AA +AV N Q + PT LLAQQH+ + + VR+ +++ Sbjct: 288 GDVGSGKTVVALYAALIAVANGYQATFMAPTELLAQQHFRTLQKFLSGSQVRVCLLTGSG 347 Query: 688 SAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRA 747 +A + ++A+V++G ID+++GTH +++ V FK LGL+++DE+H+FGV + +++ A Sbjct: 348 NATHKKNVIAQVSDGGIDLIVGTHAIIEESVSFKKLGLVVIDEQHKFGVLQRLKLRKKGA 407 Query: 748 NVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF-VREYDSMVVREAILREI 806 + D+L +TATPIPRTL++ + G D+S++ P R+ VKTF V + + I EI Sbjct: 408 SPDVLIMTATPIPRTLSLTLFGDMDISMLDEMPPGRIPVKTFWVSKNKEKAAYDFIRGEI 467 Query: 807 LRGGQVYYLYNDVENIQKA--------AERLA-ELVPEARIAIGHGQMRERELERVMNDF 857 +G QV+ +Y VE+ +K AERL E+ PE ++ + HG+M+ E E+ M DF Sbjct: 468 SKGKQVFVVYPLVEHSEKLDLKSAITEAERLRNEIFPECKVGLLHGKMKSAEKEQAMADF 527 Query: 858 HHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTP 917 +R+++LV T IIE GID+P A ++IE A+ FGLAQLHQLRGR+GR Q+Y L Sbjct: 528 KERRYDILVSTIIIEVGIDVPNATIMVIEHAERFGLAQLHQLRGRIGRGGKQSYCLLFGT 587 Query: 918 HPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYME 977 A++ + RL + + D GF +A D +RG GE G Q G E +++ + Sbjct: 588 PKTALS---RDRLRTMVNTSD---GFKIAEMDFRLRGPGEFFGTRQHGLPELKISNIFHD 641 Query: 978 --LLENAVDALKAGREPSLEDLTSQQTEVELRM 1008 LL+ A + +++ ++ Sbjct: 642 FSLLQKARKDAFEIVCRDPSLSAEEHQKIKTKV 674 >UniRef50_B7JUK9 ATP-dependent DNA helicase RecG n=12 Tax=Bacteria RepID=B7JUK9_CYAP8 Length = 819 Score = 531 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 150/477 (31%), Positives = 253/477 (53%), Gaps = 21/477 (4%) Query: 551 SRARQKAAEKVRDVAA-ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAI 609 R+ ++ + L Q+ ++ F + + F PF+ T Q + I Sbjct: 343 HARRRLVFDEFFYLQLGFLQRRQEQKHLEKSAIFLPQGKLIENFNQLLPFKLTNAQQRVI 402 Query: 610 NAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNF 669 N +L D+ M+RLV GDVG GKT VA+ + A+ + Q A++ PT +LA+QHY Sbjct: 403 NEILEDLNSSTPMNRLVQGDVGAGKTIVAVFSILAAIQSGYQAALMAPTEVLAEQHYRKL 462 Query: 670 RDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVD 729 F + +E+++ ++ +I +++ G++ +L+GTH L+Q V F+ LGL+++D Sbjct: 463 VTWFNLLHLPVELLTGSTKIAKRREIHSQLETGELPLLVGTHALIQDKVNFQRLGLVVID 522 Query: 730 EEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTF 789 E+HRFGV+ + ++ A + +LT+TATPIPRTL + + G D+S I P R ++T Sbjct: 523 EQHRFGVQQRAKLLAKGQSPHVLTMTATPIPRTLALTLHGDLDVSQIDELPPGRQPIQTT 582 Query: 790 -VREYDSMVVREAILREILRGGQVYYLYNDVEN---------IQKAAERLAELVPEARIA 839 + + + I RE+ +G Q Y ++ +E +++ + + P+ I Sbjct: 583 ALIGKERTQAYDLIRREVAQGRQAYIIFPMIEESEKLDVRAAVEEHKKLSETVFPQFNIG 642 Query: 840 IGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQL 899 + HG+M E + ++ +F + ++V TT+IE G+D+P A ++IE A+ FGL+QLHQL Sbjct: 643 LLHGRMSSSEKDEILTNFRDNKSQIIVSTTVIEVGVDVPNATVMLIENAERFGLSQLHQL 702 Query: 900 RGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELL 959 RGRVGR HQ+Y L++ T D+++RL + +D GF ++ DL RG G +L Sbjct: 703 RGRVGRGSHQSYCLLMSNSK---TPDSRQRLSVLEQSQD---GFFISEMDLRFRGPGTVL 756 Query: 960 GEEQSGSMETIGFSL--YMELLENAVDALKAGREPSLED--LTSQQTEVELRMPSLL 1012 G QSG + SL E+LE A A + + S + E+E R L+ Sbjct: 757 GTRQSGLPDFALASLVEDQEILELARSAAEKILIADSHLGGMPSLKKELERRYQKLI 813 >UniRef50_Q54900 ATP-dependent DNA helicase recG n=129 Tax=Bacilli RepID=RECG_STRPN Length = 671 Score = 531 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 170/534 (31%), Positives = 275/534 (51%), Gaps = 30/534 (5%) Query: 481 QPVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENA 540 QPV L G+ + + + ++ G L++ + + L+SR + Sbjct: 137 QPVYRLAQGISQASLVKVIKTAFDQGLDLLIE---ENLPQSLLDKYKLMSRCQAVRAMHF 193 Query: 541 PLHKLGGDAWSRARQKAA-EKVRDVAAELLDIYAQ-RAAKEGFAFKHDREQYQLFCDSFP 598 P + + +A ++ E++ +L + ++ R G +E+ S P Sbjct: 194 PKYL---AEYKQALRRIKFEELFYFQMQLQMLKSENRVQGSGLVLNWSQEKVTAVKVSLP 250 Query: 599 FETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT 658 F T Q +++ +L+DM M+RL+ GDVG GKT VA A F AV Q A++VPT Sbjct: 251 FALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSGKTVVAGLAMFAAVTAGYQAALMVPT 310 Query: 659 TLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV 718 +LA+QH+++ ++ F N ++ +++ A E+ ++L +A+G+ D++IGTH L+Q V Sbjct: 311 EILAEQHFESLQNLFPNL--KLALLTGSLKAAEKREVLETIAKGEADLIIGTHALIQDGV 368 Query: 719 KFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIAT 778 ++ LGL+I+DE+HRFGV + ++ N D+L +TATPIPRTL + G D+SII Sbjct: 369 EYARLGLIIIDEQHRFGVGQRRILREKGDNPDVLMMTATPIPRTLAITAFGDMDVSIIDQ 428 Query: 779 PPARRLAVKTF-VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA--------ERL 829 PA R + T ++ V + EI +G QVY + +E + E L Sbjct: 429 MPAGRKPIVTRWIKHEQLPQVLTWLEGEIQKGSQVYVISPLIEESEALDLKNAIALSEEL 488 Query: 830 AELVPE-ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERA 888 A +A+ HG+M+ E +++M DF ++ ++LV TT+IE G+++P A +II A Sbjct: 489 TTHFAGKAEVALLHGRMKSDEKDQIMQDFKERKTDILVSTTVIEVGVNVPNATVMIIMDA 548 Query: 889 DHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATH 948 D FGL+QLHQLRGRVGR Q+YA L+ T + R+ + + GF LA Sbjct: 549 DRFGLSQLHQLRGRVGRGDKQSYAVLVANPK---TDSGKDRMRIMTETTN---GFVLAEE 602 Query: 949 DLEIRGAGELLGEEQSGSMETIGFSL--YMELLENAVDALK--AGREPSLEDLT 998 DL++RG+GE+ G QSG E + +LE A + E ED Sbjct: 603 DLKMRGSGEIFGTRQSGLPEFQVADIIEDFPILEEARKVASYISSIEAWQEDPE 656 >UniRef50_D2BIL8 ATP-dependent DNA helicase n=5 Tax=Dehalococcoides RepID=D2BIL8_DEHSV Length = 818 Score = 529 bits (1364), Expect = e-148, Method: Composition-based stats. Identities = 173/590 (29%), Positives = 278/590 (47%), Gaps = 43/590 (7%) Query: 451 GERVARRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRY---AGMTTLEAGGITGE 507 RV + S P EL ++H V Y AG+ + Sbjct: 223 NARVVLSGRVSIFNGRPVFESPEWEELPDEADLIHTGRLVPVYPLTAGLHQRSLRRLMKN 282 Query: 508 YLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWS--RARQKAAEKVRDVA 565 ++ ++ ++P +L +R AE H + + A +++ + Sbjct: 283 FIDIS-TPGISDFLPEDTLKR-NRLLPLAEAIRQAHFPDTEELKDTARNRLAFDELFILQ 340 Query: 566 AELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRL 625 +L + + G A K + F PF+ T Q + + + +D+ + + M RL Sbjct: 341 LGVLAKKKRWQEQTGRALKVNLPAIDHFISRLPFKLTDAQTKCLADIKADISKNVPMSRL 400 Query: 626 VCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA----------- 674 + G+VG GKT VA+ + F A N Q A + PT +LA+QH+ + FA Sbjct: 401 LQGEVGSGKTIVAVISLFTAAANGLQGAFMAPTEILAEQHFKSVTRLFASIAKVSTLLDG 460 Query: 675 --------NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLL 726 + P+R+ ++ + ++ + ++ +G+IDI IGTH L+Q +++FK LGL Sbjct: 461 VHTFEGLLDHPLRVALMISDMKSSQKDILKEKIKKGEIDIAIGTHALIQKEIRFKSLGLA 520 Query: 727 IVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAV 786 ++DE+HRFGV + +K+ N IL +TATPIPRTL + + G DLS+I P R ++ Sbjct: 521 VIDEQHRFGVEQRSALKSKGLNPHILIMTATPIPRTLALTLYGDLDLSVIDELPPGRQSI 580 Query: 787 KTF-VREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAER---------LAELVPEA 836 KT ++ I ++I G Q + + VE + + +E+ PE Sbjct: 581 KTRWLKPEQRNSAYNFIRKQIEAGRQAFIICPLVEESEAIQAKAATAEYETLSSEVFPEY 640 Query: 837 RIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQL 896 ++A+ HG+M E E +M F+ + ++LV T ++E GIDIP A +++E AD FGL+QL Sbjct: 641 KVALLHGRMNAAEKESIMKHFNEGKMDILVSTPVVEVGIDIPNATVMLVESADRFGLSQL 700 Query: 897 HQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAG 956 HQ RGRVGR Q+Y L +P + Q+RL I S +D GF LA DL +RG G Sbjct: 701 HQFRGRVGRGTEQSYCMFLAKNPSLL---GQERLSIIESTQD---GFKLAEEDLRLRGPG 754 Query: 957 ELLGEEQSGSMETIGFSL-YMELLENAVDALKAGREPSLEDLTSQQTEVE 1005 E G QSG + S+ + LLE A E E + +E Sbjct: 755 EFFGTRQSGLPDLRMASISDVGLLEQARKEATRLFESDPELNLPENKALE 804 >UniRef50_C0EVE3 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EVE3_9FIRM Length = 682 Score = 529 bits (1362), Expect = e-148, Method: Composition-based stats. Identities = 152/454 (33%), Positives = 235/454 (51%), Gaps = 21/454 (4%) Query: 551 SRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAIN 610 ++ ++ + L + + E + F ++ P+ T Q + +N Sbjct: 213 EAKKRIIFDEFFRFFSALELVKDREEQALNHYIIPMEEPVKRFVENLPYPLTGAQKKVLN 272 Query: 611 AVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 670 + D +AM+RL+ GDVG GKT VAM A + AV Q A++ PT +LA+QHY NF Sbjct: 273 EIRQDFSDTMAMNRLLQGDVGSGKTIVAMTAMYAAVLAGYQAALMAPTEVLAEQHYQNFV 332 Query: 671 DRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDE 730 + + + +++ AKE+ +I A A G+I ILIGTH ++Q DV F +L ++ DE Sbjct: 333 KLLSPLGITVALLTGSTKAKEKREIKAACASGEIQILIGTHAVIQDDVAFDNLAFIVTDE 392 Query: 731 EHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVK-TF 789 +HRFGV+ ++ + +L ++ATPIPRTL + + D+SI+ PA RL +K + Sbjct: 393 QHRFGVKQRDAFMKKGKDPHVLVMSATPIPRTLGIILYRDLDVSIMNEMPASRLPIKNSV 452 Query: 790 VREYDSMVVREAILREILRGGQVYYLYNDVENIQKA--------AERLAELV-PEARIAI 840 V E I +++ G Q Y + +E +K A L++ + P + Sbjct: 453 VGTSYRPAAWEFIRKQVALGHQAYVICPMIEENEKMDLENVEEYARMLSQALPPSITVEA 512 Query: 841 GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR 900 +G MR E +M F +LV TT++E GID+P A ++IE A+ FGLAQLHQLR Sbjct: 513 LNGHMRPAEKNDIMERFSKNEIQILVSTTVVEVGIDVPNATVMLIENAERFGLAQLHQLR 572 Query: 901 GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG 960 GRVGR Q+Y ++ K +A +RL I D GF +A DL++RG GE G Sbjct: 573 GRVGRGKAQSYCVFISGSEK---EEAMERLSIIGHSND---GFEIANEDLKLRGPGEFFG 626 Query: 961 EEQSGSMETIGFSLY-----MELLENAVDALKAG 989 +QSG+M +Y +++ AVD LK Sbjct: 627 VKQSGTMNFALGDIYSNADILKMASEAVDYLKKE 660 >UniRef50_C8WW85 ATP-dependent DNA helicase RecG n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WW85_ALIAD Length = 678 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 171/514 (33%), Positives = 254/514 (49%), Gaps = 26/514 (5%) Query: 490 VGRYAGMTTLEAGGITGEYLML--TYANDAKLYVPVSSLHLISRYA--GGAEENAPLHKL 545 V Y L I L YA + + +P L+ +Y + +H+ Sbjct: 141 VPVYRASKELSTKAIHQLILKALEQYAEEIQESLP---YALVRKYRLWTHRDALFGMHRP 197 Query: 546 GGDA--WSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTP 603 R+ E+ +L + A+R G A + F P T Sbjct: 198 KSLEDVRQARRRLVFEEFLLFQIQLQWLRAKREEPAGRAQPVPSDALTAFEALLPGPMTN 257 Query: 604 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQ 663 Q +A +L D+ +P+ M RL+ GDVG GKT VA+ A F Q A++ PT +LA+ Sbjct: 258 AQRRACEDILRDLQRPVPMTRLIQGDVGSGKTWVALFACFAVHLARGQSALMAPTEILAE 317 Query: 664 QHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDL 723 QH + + VR+E+++ + +E+ ++LA +A G + + +GTH LL V+F+DL Sbjct: 318 QHARLAHELLGSAGVRVELLTGSVTGRERDRVLAGLASGDVSLAVGTHALLSEGVEFRDL 377 Query: 724 GLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR 783 LL+ DE+HRFGV + R++ D+L L+ATPIPRTL +A+ G D+SI+ P R Sbjct: 378 ALLVTDEQHRFGVAQRARLREKGRAPDVLMLSATPIPRTLALAIYGDMDVSILNELPKGR 437 Query: 784 LAVKTF-VREYDSMVVREAILREILRGGQVYYLYNDVE--------NIQKAAERLAELVP 834 V+T V D V I RE+ RG Q Y + +E ++ + ER+ E + Sbjct: 438 KPVQTIAVPSKDDETVLRLIRRELARGHQAYIVAPAIEASERDDVASVTELYERVREHLA 497 Query: 835 EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 R+ + HG+M + ER+M F + LV TT+IE GID+P A + I A+ FGLA Sbjct: 498 GFRVELLHGRMPSADKERMMRAFRDGDIHALVATTVIEVGIDVPNATVMAIYGAERFGLA 557 Query: 895 QLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRG 954 QLHQLRGRVGR H +Y L+ + A+ R+E + D GF +A DLE+RG Sbjct: 558 QLHQLRGRVGRGPHPSYCLLIHDAS---SEAARARIETMLQTND---GFEIAERDLELRG 611 Query: 955 AGELLGEEQSGSMETIGFSL--YMELLENAVDAL 986 GEL G QSG E L ++E A + Sbjct: 612 PGELFGLRQSGLPEFALGDLARDYRIMEVAREEA 645 >UniRef50_Q1Q824 ATP-dependent DNA helicase RecG n=11 Tax=Gammaproteobacteria RepID=Q1Q824_PSYCK Length = 782 Score = 527 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 156/495 (31%), Positives = 254/495 (51%), Gaps = 21/495 (4%) Query: 532 YAGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQ 591 Y ++ L +L + ++ E++ LL Q + Sbjct: 290 YTDAGQQYKLLTQLSARTHAACQRLIIEELTAHQLSLLYRRQQLHQYKAPKCAIQSPLAD 349 Query: 592 LFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQ 651 + PF+ T Q + + + +DM + M RLV GDVG GKT VA AA A+D+ Q Sbjct: 350 KLFGALPFDLTGAQKRVMRDITADMATSIPMLRLVQGDVGAGKTLVAAGAAGYALDSGWQ 409 Query: 652 VAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTH 711 VAV+ PT +LA+QH NF++ F + + ++ ++AK++ + L V+E + +++GTH Sbjct: 410 VAVMAPTEILAEQHLVNFKNWFEPLGIGVGWLAGKQTAKQRREALEAVSENTVQVVVGTH 469 Query: 712 KLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAM---RANVDILTLTATPIPRTLNMAMS 768 L Q V+F LGL+I+DE+HRFGV + + + L +TATPIPRTL M++ Sbjct: 470 ALFQDQVQFAKLGLVIIDEQHRFGVEQRMALTNKGVAGSTPHQLIMTATPIPRTLAMSVY 529 Query: 769 GMRDLSIIATPPARRLAVKTF-VREYDSMVVREAILREILRGGQVYYLYNDVENI----- 822 G D SII P R + T + V E I G Q Y++ + VE Sbjct: 530 GDMDTSIIDELPPGRTPITTVTIDRNRRDEVIERIAVNCEAGRQAYWVCSLVEESSVLDA 589 Query: 823 ---QKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPT 879 + E L+E + + RI + HG+M+ + + +M F + ++L+ TT+IE G+D+P Sbjct: 590 QAAEATYEDLSERL-DIRIGLVHGKMKGADKQAIMQAFKAGQLDLLIATTVIEVGVDVPN 648 Query: 880 ANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDL 939 A+ ++IE A+ GL+QLHQLRGRVGR ++Y LL P ++ +RL + D Sbjct: 649 ASLMVIENAERLGLSQLHQLRGRVGRGSTKSYCVLLYQKP--LSETGTERLNVLRDSTD- 705 Query: 940 GAGFALATHDLEIRGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTS 999 GF +A DLE+RG GELLG+ Q+G+ +G+ L + + + A+ L + Sbjct: 706 --GFVIAQKDLELRGPGELLGKRQTGN---VGYYLADLIRDEQLFAIAQRLAKHLIADPA 760 Query: 1000 QQTEVELRMPSLLPD 1014 ++ +V + +P+ Sbjct: 761 RKADVSQLIHRWMPE 775 >UniRef50_B2KB03 ATP-dependent DNA helicase RecG n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KB03_ELUMP Length = 691 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 157/507 (30%), Positives = 263/507 (51%), Gaps = 40/507 (7%) Query: 533 AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 592 L + ++ E+ + + Q+ ++ + + Sbjct: 207 IHFPSNTPELD-------AARKRLVYEEFLLLTSAWGIKKQQKTVQKNYTYHIKTNLLTP 259 Query: 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 652 F ++ FE T Q + IN + DM L M RL+ GDVG GKT VA+ A LAV+N Q Sbjct: 260 FKNNLGFELTHAQKKVINEIFKDMQSTLPMTRLLQGDVGSGKTTVALSAMLLAVENKFQA 319 Query: 653 AVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHK 712 A++ PT +LA+QH+ + V+ +++ K + ++LA++AEGKIDIL+GTH Sbjct: 320 ALMAPTEILAEQHFITITNFLKGLDVKTALLTSSVKGKTKEKLLADLAEGKIDILVGTHS 379 Query: 713 LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 772 +++ +V FK+L + +VDE+HRFGV + R++ +D+LT+TATPIPRTL +A G + Sbjct: 380 IIEDNVVFKNLKMTVVDEQHRFGVEQRTRLRNKAKEIDMLTMTATPIPRTLALAFYGDLE 439 Query: 773 LSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAA------ 826 +S I P R + TF + E+ +G QVY +Y +E +K Sbjct: 440 VSAITELPPGRKPITTFSITEG--EAYQKAKSELEKGRQVYIVYPLIEESEKLTVKAVKE 497 Query: 827 --ERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTII 884 E++ + ++ + HGQM+ E E+ M DF ++ +VLV T +IE GID+ A ++ Sbjct: 498 DIEKIEGVFAPYKVGMLHGQMKRAEKEKAMADFKDKKTDVLVATPVIEVGIDVKNATVMV 557 Query: 885 IERADHFGLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFA 944 I+ A+ FGLA LHQLRGRVGR +++ L+ P ++T +++R++ + D GF Sbjct: 558 IQSAERFGLASLHQLRGRVGRGSEESFCLLV---PHNLSTVSKERIDILCQTTD---GFK 611 Query: 945 LATHDLEIRGAGELLGEEQSGSMETIGFSL--YMELLENAVDALKAGREPSLEDLTSQQT 1002 + D+++RG GE+LG QSG E + E+L+ A++ ++L +Q Sbjct: 612 IGERDMQLRGPGEILGTRQSGDFEFKAGDIFKDQEVLKWAIE--------DRDELLTQDP 663 Query: 1003 EVELRMPSLLPDDFIPDVNTRLSFYKR 1029 ++ L +L + I Y++ Sbjct: 664 KLILPEHALFKERLI-------DLYQK 683 >UniRef50_B0MQ01 Putative uncharacterized protein n=1 Tax=Eubacterium siraeum DSM 15702 RepID=B0MQ01_9FIRM Length = 677 Score = 526 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 160/546 (29%), Positives = 271/546 (49%), Gaps = 34/546 (6%) Query: 482 PVVHLEHGVGRYAGMTTLEAGGITGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAP 541 P L G+ + G+ + + ++ + +D + LIS + P Sbjct: 146 PRYSLTTGISQ--GIMSNCIKNVLRDFTFPEHLSDTLM----DKYSLISYDNALRWIHFP 199 Query: 542 LHKLGGDAWSRAR-QKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFE 600 +K + + +A+ + E++ + L + ++ G + + + S PF Sbjct: 200 ENK---EQYDKAKYRLTFEELFLLQLGLKSMKNRKKRLAGAPM--ESKSIDEYYSSLPFT 254 Query: 601 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTL 660 T Q +AI+ DM + + M+RL+ GDVG GKT VA AA+ A N Q ++ PT + Sbjct: 255 LTGAQIRAISECCDDMQKSVPMNRLLQGDVGSGKTAVAAGAAYFAYLNGYQSTLMAPTEI 314 Query: 661 LAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKF 720 LA+QHYD A V I +++ ++ ++ QI +A+G+ID+ +GT L+Q +F Sbjct: 315 LAKQHYDTLYKFLAPLGVTIALLTGSQTPAQKKQIRQLIADGQIDVAVGTQALIQKSTRF 374 Query: 721 KDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP 780 LGL+I DE+HRFGV + + + +L ++ATPIPRTL M + G D+SI+ P Sbjct: 375 SSLGLVITDEQHRFGVGQRAALGSKGNEPHVLVMSATPIPRTLGMIIYGDLDISILDEMP 434 Query: 781 ARRLAVKTF-VREYDSMVVREAILREILRGGQVYYLYNDVEN--IQKAA--ERLAEL--- 832 RL ++T+ V + IL+ + G Q Y + +E +KAA E + L Sbjct: 435 KGRLPIRTYAVDTSYRERLYRFILKYVNNGFQAYIVCPLIEEGVSEKAAATEYINSLQNT 494 Query: 833 -VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHF 891 + + HG+M++ + + VM DF + VLV T++IE G+D+P A ++IE A+ F Sbjct: 495 CLANVPTGLLHGKMKQADKDAVMQDFKDNKLKVLVATSVIEVGVDVPNAVVMVIENAEQF 554 Query: 892 GLAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLE 951 GL+QLHQLRGRVGR Q++ L+T + T ++R++ + D GF +A DL+ Sbjct: 555 GLSQLHQLRGRVGRGTEQSHCILVTDNKSDYT---KQRMDTMVKTSD---GFEIANEDLK 608 Query: 952 IRGAGELLGEEQSGSMETIGFSLY-----MELLENAVDAL--KAGREPSLEDLTSQQTEV 1004 +RG G+ G +Q G + +Y +++ A D + R E+ + Sbjct: 609 LRGPGDFFGSKQHGLPQLKIADIYADLDILKMTGEAADDILRDDSRLEKPENRCYTEMVN 668 Query: 1005 ELRMPS 1010 L + Sbjct: 669 NLFENA 674 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.149 0.419 Lambda K H 0.267 0.0459 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,958,409,927 Number of Sequences: 3077464 Number of extensions: 341885303 Number of successful extensions: 1104155 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 6339 Number of HSP's successfully gapped in prelim test: 7472 Number of HSP's that attempted gapping in prelim test: 1046757 Number of HSP's gapped (non-prelim): 32345 length of query: 1148 length of database: 1,040,396,356 effective HSP length: 140 effective length of query: 1008 effective length of database: 609,551,396 effective search space: 614427807168 effective search space used: 614427807168 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 99 (42.6 bits)