BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (337 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AEV2 Protein hnr n=144 Tax=Enterobacteriaceae RepID=H... 683 0.0 UniRef50_D0ZH67 Response regulator receiver protein n=20 Tax=Ent... 395 e-108 UniRef50_D1NYI5 Protein hnr n=5 Tax=Enterobacteriaceae RepID=D1N... 268 2e-70 UniRef50_B4EXS4 Response regulator n=3 Tax=Proteus RepID=B4EXS4_... 255 1e-66 UniRef50_Q1ZRM9 Hypothetical response regulator n=5 Tax=Photobac... 156 1e-36 UniRef50_D0IC36 Response regulator n=1 Tax=Grimontia hollisae CI... 154 3e-36 UniRef50_B5FFM8 Hnr protein n=3 Tax=Aliivibrio RepID=B5FFM8_VIBFM 135 3e-30 UniRef50_Q7MIU6 Response regulator n=56 Tax=Vibrionales RepID=Q7... 129 1e-28 UniRef50_A0KNX4 Response regulator receiver domain n=2 Tax=Aerom... 113 1e-23 UniRef50_A4BEJ2 Probable two-component response regulator n=1 Ta... 110 1e-22 UniRef50_Q48KH7 Response regulator n=23 Tax=Pseudomonadaceae Rep... 105 2e-21 UniRef50_C4LC82 Response regulator receiver protein n=1 Tax=Tolu... 97 9e-19 UniRef50_Q1N0N5 Response regulator n=1 Tax=Bermanella marisrubri... 97 1e-18 UniRef50_Q21LQ5 Response regulator receiver n=1 Tax=Saccharophag... 95 5e-18 UniRef50_C0QLH6 Sensor protein n=2 Tax=Deltaproteobacteria RepID... 93 1e-17 UniRef50_C5BR05 Response regulator receiver domain protein n=1 T... 91 7e-17 UniRef50_A3WMP1 Response regulator of sigma subunit, serine phos... 86 2e-15 UniRef50_B8FJD4 Sensor protein n=1 Tax=Desulfatibacillum alkeniv... 86 2e-15 UniRef50_Q7MSI2 Putative uncharacterized protein n=1 Tax=Wolinel... 82 3e-14 UniRef50_C1TKX4 Diguanylate cyclase (GGDEF) domain-containing pr... 81 4e-14 UniRef50_C7LTV4 Response regulator receiver modulated diguanylat... 81 6e-14 UniRef50_A8ZX41 Response regulator receiver protein n=1 Tax=Desu... 80 8e-14 UniRef50_C0QLH7 Sensor protein n=1 Tax=Desulfobacterium autotrop... 80 1e-13 UniRef50_Q12PI4 Response regulator receiver protein n=22 Tax=She... 80 1e-13 UniRef50_Q1Q8Y0 CheA signal transduction histidine kinases n=2 T... 79 2e-13 UniRef50_D0E8E5 Putative adenylate/guanylate cyclase n=1 Tax=Lyn... 79 2e-13 UniRef50_C7LPI5 Sensor protein n=1 Tax=Desulfomicrobium baculatu... 79 2e-13 UniRef50_A4V7G6 Putative two-component regulator sensor histidin... 79 2e-13 UniRef50_A0L8E1 Putative PAS/PAC sensor protein n=1 Tax=Magnetoc... 79 2e-13 UniRef50_A7VQH6 Putative uncharacterized protein n=1 Tax=Clostri... 79 2e-13 UniRef50_C5CE55 Response regulator receiver modulated serine pho... 79 3e-13 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 79 3e-13 UniRef50_B1ZXR5 Response regulator receiver modulated serine pho... 79 3e-13 UniRef50_Q1IUD6 Two component transcriptional regulator, winged ... 79 3e-13 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 79 3e-13 UniRef50_B3PDM6 Response regulator n=1 Tax=Cellvibrio japonicus ... 79 3e-13 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 79 3e-13 UniRef50_B1XIW8 Two-component response regulator (RsbV-like) n=1... 78 4e-13 UniRef50_A6QCV7 Two-component response regulator n=1 Tax=Sulfuro... 78 4e-13 UniRef50_C4G516 Putative uncharacterized protein n=1 Tax=Abiotro... 78 5e-13 UniRef50_Q8YY73 Sensor protein n=2 Tax=Nostocaceae RepID=Q8YY73_... 78 5e-13 UniRef50_C6D6B5 Two component transcriptional regulator, AraC fa... 77 6e-13 UniRef50_C0QLH4 Two-component response regulator n=1 Tax=Desulfo... 77 7e-13 UniRef50_Q30VN8 Putative PAS/PAC sensor protein n=1 Tax=Desulfov... 77 8e-13 UniRef50_B0SGQ1 Response regulator n=2 Tax=Leptospira biflexa se... 77 9e-13 UniRef50_Q2IQQ6 Response regulator receiver domain protein (CheY... 77 9e-13 UniRef50_Q1D7F8 Sigma-54 activator protein ActB n=7 Tax=Cystobac... 77 1e-12 UniRef50_C6MU29 Response regulator receiver modulated diguanylat... 76 1e-12 UniRef50_B8HWK7 Sensor protein n=1 Tax=Cyanothece sp. PCC 7425 R... 76 1e-12 UniRef50_Q2JX03 Response regulator n=2 Tax=Synechococcus RepID=Q... 76 1e-12 UniRef50_Q1Q5K3 Sensor protein n=1 Tax=Candidatus Kuenenia stutt... 76 2e-12 UniRef50_B0AAH6 Putative uncharacterized protein n=1 Tax=Clostri... 76 2e-12 UniRef50_Q7URS3 Putative two-component system response regulator... 76 2e-12 UniRef50_B0SE00 Sensor protein n=2 Tax=Leptospira biflexa serova... 76 2e-12 UniRef50_B5XRS9 Response regulator n=9 Tax=Enterobacteriaceae Re... 75 3e-12 UniRef50_C1F979 DNA-binding response regulator n=1 Tax=Acidobact... 75 3e-12 UniRef50_A1VGA9 Sensor protein n=3 Tax=Desulfovibrio vulgaris Re... 75 3e-12 UniRef50_C4ZM81 Two component, sigma54 specific, transcriptional... 75 3e-12 UniRef50_B1WUT4 Sensor protein n=2 Tax=Cyanothece RepID=B1WUT4_C... 75 3e-12 UniRef50_C6C248 Response regulator receiver modulated metal depe... 75 3e-12 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 75 3e-12 UniRef50_Q2LXY9 Response regulator receiver domain and a sigma f... 75 4e-12 UniRef50_A0LBU1 Response regulator receiver modulated diguanylat... 75 4e-12 UniRef50_B1ZTF2 Two component transcriptional regulator, winged ... 75 4e-12 UniRef50_Q10XK2 Adenylate/guanylate cyclase n=4 Tax=Bacteria Rep... 75 5e-12 UniRef50_C1XV31 Response regulator with CheY-like receiver domai... 75 5e-12 UniRef50_Q1Q5K2 Similar to two component response regulator n=1 ... 75 5e-12 UniRef50_C6X6K2 CheA signal transduction histidine kinase n=1 Ta... 74 6e-12 UniRef50_A9BXU4 Two component transcriptional regulator, winged ... 74 6e-12 UniRef50_C6CWR9 Two component transcriptional regulator, AraC fa... 74 6e-12 UniRef50_B8DJD4 Response regulator receiver modulated metal depe... 74 6e-12 UniRef50_C4XSW8 Response regulator receiver protein n=2 Tax=Desu... 74 6e-12 UniRef50_B2I164 Response regulator consisting of a CheY-like rec... 74 6e-12 UniRef50_B1I6I2 Response regulator receiver protein n=1 Tax=Cand... 74 7e-12 UniRef50_B0K8A6 Response regulator receiver modulated diguanylat... 74 7e-12 UniRef50_B8FKA0 Sensor protein n=1 Tax=Desulfatibacillum alkeniv... 74 7e-12 UniRef50_Q07SD0 Response regulator receiver modulated serine pho... 74 8e-12 UniRef50_B8FGV0 PAS modulated sigma54 specific transcriptional r... 74 8e-12 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 74 8e-12 UniRef50_A9WEK6 Sensor protein n=3 Tax=Chloroflexus RepID=A9WEK6... 74 8e-12 UniRef50_C6D3A0 Two component transcriptional regulator, AraC fa... 74 9e-12 UniRef50_A9U772 Predicted protein (Fragment) n=2 Tax=cellular or... 74 1e-11 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 74 1e-11 UniRef50_Q3JS34 Sensor protein n=26 Tax=Burkholderia RepID=Q3JS3... 74 1e-11 UniRef50_A3Y6D4 Putative two-component response regulator n=1 Ta... 74 1e-11 UniRef50_B5JB24 Stage II sporulation protein E n=3 Tax=Rhodobact... 73 1e-11 UniRef50_C6BT74 Signal transduction histidine kinase n=1 Tax=Des... 73 1e-11 UniRef50_C6L8Z1 Putative response regulator receiver domain prot... 73 1e-11 UniRef50_C2H9Y3 Possible response regulator n=2 Tax=Enterococcus... 73 1e-11 UniRef50_Q1NPP0 Response regulator receiver n=1 Tax=delta proteo... 73 1e-11 UniRef50_Q46XZ9 Response regulator receiver n=7 Tax=Proteobacter... 73 2e-11 UniRef50_B2J7C2 Sensor protein n=1 Tax=Nostoc punctiforme PCC 73... 73 2e-11 UniRef50_A7I8C1 Sensor protein n=1 Tax=Candidatus Methanoregula ... 73 2e-11 UniRef50_C4XLI9 Two-component hybrid sensor and regulator n=1 Ta... 73 2e-11 UniRef50_C6LFN3 DNA-binding response regulator ResD n=21 Tax=Bac... 73 2e-11 UniRef50_A8S3H1 Putative uncharacterized protein n=1 Tax=Clostri... 72 2e-11 UniRef50_B8HVV8 Response regulator receiver protein n=1 Tax=Cyan... 72 2e-11 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 72 2e-11 UniRef50_C4Z758 Two-component system, OmpR family, response regu... 72 2e-11 UniRef50_C3X1J5 Response regulator receiver:Transcriptional regu... 72 2e-11 UniRef50_C0D0A3 Putative uncharacterized protein n=1 Tax=Clostri... 72 2e-11 UniRef50_B4AUG4 Sensor protein n=1 Tax=Cyanothece sp. PCC 7822 R... 72 2e-11 UniRef50_Q1D3Y7 Sensor protein n=2 Tax=Cystobacterineae RepID=Q1... 72 2e-11 UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminoc... 72 3e-11 UniRef50_D0LLH3 Two component transcriptional regulator, winged ... 72 3e-11 UniRef50_A9AW15 Adenylate/guanylate cyclase n=2 Tax=Bacteria Rep... 72 3e-11 UniRef50_A6QD34 Two-component response regulator n=1 Tax=Sulfuro... 72 3e-11 UniRef50_D0IVE7 Two component transcriptional regulator, winged ... 72 3e-11 UniRef50_A3JMM3 Sensor protein n=1 Tax=Rhodobacterales bacterium... 72 3e-11 UniRef50_Q4K4F2 Sensor histidine kinase/response regulator ChpA,... 72 3e-11 UniRef50_D1B3C5 Response regulator receiver n=1 Tax=Sulfurospiri... 72 4e-11 UniRef50_C4T682 Acetoacetate metabolism regulatory protein atoC ... 72 4e-11 UniRef50_A6T295 Two-component hybrid sensor and regulator n=1 Ta... 72 4e-11 UniRef50_A6BJV8 Putative uncharacterized protein n=3 Tax=Lachnos... 72 4e-11 UniRef50_Q1LIY7 Two component transcriptional regulator, winged ... 72 4e-11 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 72 4e-11 UniRef50_C8NDP1 DNA-binding response regulator n=2 Tax=Firmicute... 72 4e-11 UniRef50_B0TI80 Response regulator receiver domain protein, puta... 72 4e-11 UniRef50_A4G8M3 Putative chemotaxis protein histidine kinase n=1... 72 4e-11 UniRef50_Q10XL1 Response regulator receiver protein n=1 Tax=Tric... 72 4e-11 UniRef50_B3E3M1 Response regulator receiver protein n=1 Tax=Geob... 72 4e-11 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 72 4e-11 UniRef50_C4XL40 Sensor protein n=1 Tax=Desulfovibrio magneticus ... 72 4e-11 UniRef50_B4SKU5 Sensor protein n=2 Tax=Stenotrophomonas maltophi... 72 4e-11 UniRef50_C0QK65 Two-component sensory box histidine kinase/respo... 72 4e-11 UniRef50_D1CH70 Response regulator receiver protein n=1 Tax=Ther... 72 4e-11 UniRef50_UPI0001B559F0 two-component system, response regulator ... 71 4e-11 UniRef50_A9KRH4 Two component transcriptional regulator, winged ... 71 4e-11 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 71 5e-11 UniRef50_A9B4G5 Multi-sensor signal transduction histidine kinas... 71 5e-11 UniRef50_C0D691 Putative uncharacterized protein n=1 Tax=Clostri... 71 5e-11 UniRef50_A6WJS0 Response regulator receiver n=6 Tax=Shewanella R... 71 5e-11 UniRef50_Q0PIJ8 Spo0F n=1 Tax=Heliobacillus mobilis RepID=Q0PIJ8... 71 5e-11 UniRef50_A6Q2D2 Two-component response regulator n=2 Tax=Epsilon... 71 5e-11 UniRef50_Q0AUA3 Response regulator receiver protein n=1 Tax=Synt... 71 6e-11 UniRef50_B4W013 PAS fold family n=2 Tax=Bacteria RepID=B4W013_9CYAN 71 6e-11 UniRef50_A8GZ93 Response regulator receiver modulated serine pho... 71 6e-11 UniRef50_A0LD37 Sensor protein n=1 Tax=Magnetococcus sp. MC-1 Re... 71 6e-11 UniRef50_C0GSA6 Response regulator receiver modulated metal depe... 71 6e-11 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 71 6e-11 UniRef50_A8R814 Putative uncharacterized protein n=1 Tax=Eubacte... 71 6e-11 UniRef50_A0YCS2 Probable two-component response regulator n=1 Ta... 71 6e-11 UniRef50_D2R0C0 Response regulator receiver protein n=5 Tax=Plan... 71 7e-11 UniRef50_C1ZGQ6 Response regulator with CheY-like receiver domai... 71 7e-11 UniRef50_Q2SBW1 Response regulator containing a CheY-like receiv... 70 8e-11 UniRef50_C5CGF8 Two component transcriptional regulator, winged ... 70 8e-11 UniRef50_Q2SA42 Chemotaxis protein histidine kinase and related ... 70 8e-11 UniRef50_Q07VY4 Response regulator receiver modulated diguanylat... 70 8e-11 UniRef50_C1XFY4 Two component transcriptional regulator, winged ... 70 8e-11 UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=... 70 8e-11 UniRef50_D1U6T9 Response regulator receiver modulated metal depe... 70 8e-11 UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional... 70 8e-11 UniRef50_C1A9Q4 Putative response regulator n=1 Tax=Gemmatimonas... 70 8e-11 UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacter... 70 8e-11 UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleu... 70 8e-11 UniRef50_A8RNS9 Putative uncharacterized protein n=1 Tax=Clostri... 70 8e-11 UniRef50_B1YJZ1 Two component transcriptional regulator, winged ... 70 8e-11 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 70 9e-11 UniRef50_B4VIF1 PAS fold family n=1 Tax=Microcoleus chthonoplast... 70 9e-11 UniRef50_A6QCB8 Two-component response regulator n=1 Tax=Sulfuro... 70 9e-11 UniRef50_C8N703 Putative uncharacterized protein (Fragment) n=1 ... 70 9e-11 UniRef50_B8DLW6 Response regulator receiver modulated diguanylat... 70 9e-11 UniRef50_A5GBG4 Response regulator receiver modulated diguanylat... 70 9e-11 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 70 9e-11 UniRef50_A8RM75 Putative uncharacterized protein n=2 Tax=Clostri... 70 1e-10 UniRef50_Q04D59 DNA-binding response regulator, OmpR family (Rec... 70 1e-10 UniRef50_C7PQL7 Sensor protein n=1 Tax=Chitinophaga pinensis DSM... 70 1e-10 UniRef50_C6CTP9 Two component transcriptional regulator, AraC fa... 70 1e-10 UniRef50_B5Y9L0 Putative transcriptional regulator n=1 Tax=Copro... 70 1e-10 UniRef50_A5WHF4 CheA signal transduction histidine kinase n=1 Ta... 70 1e-10 UniRef50_D1P911 DNA-binding response regulator TrcR n=1 Tax=Prev... 70 1e-10 UniRef50_UPI00017880F1 two component transcriptional regulator, ... 70 1e-10 UniRef50_Q3B305 Two component transcriptional regulator, Fis fam... 70 1e-10 UniRef50_D0ZCI2 Serine phosphatase RsbU, regulator of sigma subu... 70 1e-10 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 70 1e-10 UniRef50_Q12T20 Two component transcriptional regulator, winged ... 70 1e-10 UniRef50_C7RK06 CheA signal transduction histidine kinase n=1 Ta... 70 1e-10 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 70 1e-10 UniRef50_B4VNT0 Adenylate and Guanylate cyclase catalytic domain... 70 1e-10 UniRef50_Q3DCX6 DNA-binding response regulator n=7 Tax=Streptoco... 70 1e-10 UniRef50_Q1INQ1 Response regulator receiver modulated metal depe... 70 1e-10 UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanyl... 70 1e-10 UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaprot... 70 1e-10 UniRef50_A4XHB8 Two component transcriptional regulator, AraC fa... 70 1e-10 UniRef50_UPI0001C31C36 two component transcriptional regulator, ... 70 1e-10 UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional... 70 1e-10 UniRef50_C1SIR8 Response regulator with CheY-like receiver domai... 70 1e-10 UniRef50_UPI00016998E7 two-component system sensor protein n=1 T... 70 1e-10 UniRef50_C7LX78 Two component, sigma54 specific, transcriptional... 70 1e-10 UniRef50_C6CY25 Two component transcriptional regulator, AraC fa... 70 1e-10 UniRef50_D2L5L6 Multi-sensor signal transduction histidine kinas... 70 1e-10 UniRef50_Q251C7 Putative uncharacterized protein n=1 Tax=Desulfi... 70 1e-10 UniRef50_C7LSX2 Response regulator receiver modulated metal depe... 70 2e-10 UniRef50_D1CG76 Two component transcriptional regulator, winged ... 70 2e-10 UniRef50_Q310A6 Histidine kinase n=1 Tax=Desulfovibrio desulfuri... 70 2e-10 UniRef50_UPI00016C51FD response regulator receiver domain protei... 70 2e-10 UniRef50_A0L4R7 Response regulator receiver protein n=1 Tax=Magn... 70 2e-10 UniRef50_UPI0001BCDC24 two component AraC family transcriptional... 70 2e-10 UniRef50_Q47FN5 Response regulator receiver modulated diguanylat... 69 2e-10 UniRef50_B8H0J1 Two-component receiver domain protein n=2 Tax=Ca... 69 2e-10 UniRef50_A3Z1C2 Sensor protein n=1 Tax=Synechococcus sp. WH 5701... 69 2e-10 UniRef50_Q21NE6 Response regulator receiver n=1 Tax=Saccharophag... 69 2e-10 UniRef50_D1BPS5 Two component transcriptional regulator, winged ... 69 2e-10 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 69 2e-10 UniRef50_C3K4W9 Sensor protein n=1 Tax=Pseudomonas fluorescens S... 69 2e-10 UniRef50_B5SK07 Sensor protein n=5 Tax=Ralstonia solanacearum Re... 69 2e-10 UniRef50_B7G5E0 Diatom response regulator 3 (Fragment) n=2 Tax=P... 69 2e-10 UniRef50_A6GMM8 Response regulator n=1 Tax=Limnobacter sp. MED10... 69 2e-10 UniRef50_A0YNE5 Sensor protein n=1 Tax=Lyngbya sp. PCC 8106 RepI... 69 2e-10 UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacteriu... 69 2e-10 UniRef50_A4F8F4 Response regulator, two-component system n=1 Tax... 69 2e-10 UniRef50_C4WQ62 Probable transcriptional regulator ycf27 n=1 Tax... 69 2e-10 UniRef50_D1ASU8 Nitrogen assimilation regulatory protein n=5 Tax... 69 2e-10 UniRef50_Q0TRX2 DNA-bindng response regulator, AraC family n=12 ... 69 2e-10 UniRef50_UPI00017895AE two component transcriptional regulator, ... 69 2e-10 UniRef50_Q7MRH8 Putative uncharacterized protein n=1 Tax=Wolinel... 69 2e-10 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 69 2e-10 UniRef50_C6E6L0 Response regulator receiver protein n=3 Tax=Geob... 69 2e-10 UniRef50_C9RP01 Sensor protein n=1 Tax=Fibrobacter succinogenes ... 69 2e-10 UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfov... 69 2e-10 UniRef50_B3E283 Response regulator receiver protein n=1 Tax=Geob... 69 2e-10 UniRef50_A0LGG6 Response regulator receiver modulated FAD-depend... 69 2e-10 UniRef50_B3QXR2 Response regulator receiver modulated metal depe... 69 2e-10 UniRef50_UPI00016C4C5C probable response regulator n=1 Tax=Gemma... 69 2e-10 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 69 2e-10 UniRef50_B8FZ84 Response regulator receiver protein n=2 Tax=Desu... 69 2e-10 UniRef50_A0LPJ2 Two component transcriptional regulator, winged ... 69 2e-10 UniRef50_A4CLA5 Two-component response regulator n=1 Tax=Robigin... 69 2e-10 UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pi... 69 3e-10 UniRef50_B2J816 Sensor protein n=7 Tax=Bacteria RepID=B2J816_NOSP7 69 3e-10 UniRef50_Q7MAP6 GGDEF FAMILY PROTEIN n=1 Tax=Wolinella succinoge... 69 3e-10 UniRef50_B0NHY9 Putative uncharacterized protein n=2 Tax=Clostri... 69 3e-10 UniRef50_A7NFA3 Response regulator receiver protein n=2 Tax=Rose... 69 3e-10 UniRef50_C3XEB9 Two-component system response regulator protein ... 69 3e-10 UniRef50_Q0F1Y1 Probable two-component hybrid sensor and regulat... 69 3e-10 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 69 3e-10 UniRef50_A8V332 DIGUANYLATE CYCLASE n=1 Tax=Hydrogenivirga sp. 1... 69 3e-10 UniRef50_A3Y9W5 DNA-binding response regulator n=1 Tax=Marinomon... 69 3e-10 UniRef50_D0M892 Response regulator n=24 Tax=Vibrionales RepID=D0... 69 3e-10 UniRef50_Q8YTJ1 Two-component response regulator n=3 Tax=Nostoca... 69 3e-10 UniRef50_C6BRJ1 Sensor protein n=4 Tax=Desulfovibrionales RepID=... 69 3e-10 UniRef50_D0RPA8 Regulatory components of sensory transduction sy... 69 3e-10 UniRef50_A0LFY0 Response regulator receiver protein n=1 Tax=Synt... 69 3e-10 UniRef50_A4SPH4 Sensor protein n=2 Tax=Aeromonas RepID=A4SPH4_AERS4 69 3e-10 UniRef50_A6CEY2 Sensor protein n=1 Tax=Planctomyces maris DSM 87... 69 3e-10 UniRef50_C6LGW7 DNA-binding response regulator n=1 Tax=Bryantell... 69 4e-10 UniRef50_Q8ES65 Hypothetical conserved protein n=1 Tax=Oceanobac... 68 4e-10 UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostri... 68 4e-10 UniRef50_A7C7C3 DNA-binding response regulator n=1 Tax=Beggiatoa... 68 4e-10 UniRef50_C7PE49 Two component transcriptional regulator, winged ... 68 4e-10 >UniRef50_P0AEV2 Protein hnr n=144 Tax=Enterobacteriaceae RepID=HNR_ECO57 Length = 337 Score = 683 bits (1763), Expect = 0.0, Method: Compositional matrix adjust. Identities = 337/337 (100%), Positives = 337/337 (100%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA Sbjct: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV Sbjct: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA Sbjct: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE Sbjct: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP 300 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP Sbjct: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP 300 Query: 301 LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE Sbjct: 301 LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 >UniRef50_D0ZH67 Response regulator receiver protein n=20 Tax=Enterobacteriaceae RepID=D0ZH67_EDWTE Length = 358 Score = 395 bits (1014), Expect = e-108, Method: Compositional matrix adjust. Identities = 192/336 (57%), Positives = 250/336 (74%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M+Q L KQI+IV+D+ VFR LL + ++ G AA+G +AL+L PDL++CD++ Sbjct: 1 MSQVLTDKQIMIVDDDAVFRRLLAGYLTTQGVRVTEAANGREALKLYPQCHPDLILCDLS 60 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP MNG++LL H+ RG QTPV+VISATE+++DIA+A+RLG +DVLLKPV+D RLR+M+ Sbjct: 61 MPEMNGIELLRHLLMRGSQTPVMVISATESVSDIARAMRLGAKDVLLKPVRDFTRLRQML 120 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 ACLYP++F+S EE L DW A+ PA A +LL++LQPPVQQVI+ CRVNYRQL Sbjct: 121 LACLYPALFDSLALEENALSHDWAALQREPAQAVRLLRQLQPPVQQVIAGCRVNYRQLTE 180 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 D GLVLDIA LS D+AFYCLD TR+ GVLAAL++RA+FN LLQ QLA Q + LP Sbjct: 181 PDSCGLVLDIAPLSSRDMAFYCLDTTRSAEYGVLAALMIRAIFNALLQSQLAAQERPLPP 240 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP 300 + +LK+VN LLR+A L GQFP+L GYYH N++LVSAGL+A L + VQ+S +P Sbjct: 241 MSVILKRVNQLLRKAGLRGQFPMLAGYYHAVSGNVVLVSAGLHARLEAEDRTVQLSGAMP 300 Query: 301 LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSA 336 LGTLG+ ++NQLS R WQCQIW + G+LRLML+A Sbjct: 301 LGTLGSIHVNQLSLRSRRWQCQIWSSVGQLRLMLAA 336 >UniRef50_D1NYI5 Protein hnr n=5 Tax=Enterobacteriaceae RepID=D1NYI5_9ENTR Length = 338 Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 126/333 (37%), Positives = 207/333 (62%), Gaps = 2/333 (0%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL--GGFTPDLMICDIAMPRM 64 ++ILIVEDE++F ++L + SL +A +G AL+L+ TPD+++CD+ MP M Sbjct: 3 NRKILIVEDEKIFCTILREYLESLETEVYIADNGALALDLITEKHLTPDVILCDLNMPVM 62 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 NG + + R PV+VISAT + + + RLG +D LLKP+K+L+ ++ + + L Sbjct: 63 NGETFMAELVGRNIHIPVIVISATTDFTQLDRMFRLGAKDALLKPIKNLDEVKMTIHSAL 122 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 YP +++ E + + + + +L++LQPPV Q+I+ R+NYRQL A++ Sbjct: 123 YPEKYDTESVMEHEIQNMSNILHSDKLDMLAILKQLQPPVSQIINGYRINYRQLNEANRF 182 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 GL+LDIAA+SE + FYC+D R+ G++AA L+R +FN LL+ ++H +++LP + + Sbjct: 183 GLLLDIAAISEEQVGFYCIDTERSPQEGIMAAFLIRVVFNDLLKSAVSHPDKKLPNIDRI 242 Query: 245 LKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVPLGTL 304 + Q+NHLL ++ GQFPLL+GY++ + KN+IL SAGL A + T H + +PLGTL Sbjct: 243 IHQINHLLEESGFSGQFPLLLGYFNTKTKNVILASAGLEAEITTENHHYHLDRNIPLGTL 302 Query: 305 GNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 + + N+L W+C I R++LM + + Sbjct: 303 KSYHSNRLDFHGAQWKCLIRNNDQRIKLMFNPD 335 >UniRef50_B4EXS4 Response regulator n=3 Tax=Proteus RepID=B4EXS4_PROMH Length = 339 Score = 255 bits (652), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 138/336 (41%), Positives = 205/336 (61%), Gaps = 3/336 (0%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-GFTPDLMICDI 59 M + LVGK+ILI++DE VFR++L +FS A +G AL LL G PDL++CDI Sbjct: 1 MNKALVGKKILIIDDEVVFRTMLTEYFSHEKACVYATDNGSQALLLLEEGLRPDLILCDI 60 Query: 60 AMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 MP MNG L H+ R PV+ IS T+NMA+I LR G +DV LKPV +L +L++ Sbjct: 61 RMPVMNGPTFLCHLEQRHWSFPVIAISCTDNMAEIDDMLRFGAQDVFLKPVTNLAKLKQK 120 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLV 179 V L P F S + +L W+ + + P ++++QP V+Q+++ VNYRQL Sbjct: 121 VIEVLCPGFFESELIARGQLGPLWNNLREQPHYIQSFVKQMQPQVKQIVAGYNVNYRQLN 180 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 A + GL+ DIA LS++ + FYC+DV+ NG+L ALLLR +FN L+ + + LP Sbjct: 181 DASQMGLLFDIATLSKDQIIFYCVDVSNDEENGLLVALLLRVVFNRFLKA--TEKRRFLP 238 Query: 240 ELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGV 299 + +L ++N +L + G FPL++GYYH + KN++L SAGL A + T + +++G+ Sbjct: 239 SMYNILNKINKMLEDMGVRGSFPLILGYYHTKEKNILLASAGLRAEIKTENKKYVLNSGI 298 Query: 300 PLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLS 335 PLGTL + Y+NQ+ WQC+IW ++ LM S Sbjct: 299 PLGTLHSLYINQIKCVGIDWQCKIWNQHHKINLMFS 334 >UniRef50_Q1ZRM9 Hypothetical response regulator n=5 Tax=Photobacterium RepID=Q1ZRM9_PHOAS Length = 354 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 111/347 (31%), Positives = 177/347 (51%), Gaps = 34/347 (9%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L GK +L+VED+ VFR+++ + S G A +G++ L L PDL++CD+AMP M Sbjct: 6 LEGKDVLVVEDDPVFRNMIVGFLESQGCLVQEADNGLEGLRALKEHIPDLLLCDLAMPVM 65 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 G++ +E + + P++VIS T MAD+A ALRLGV+D L+KP++++ L+ + + L Sbjct: 66 TGMEFVEEVSIQYPMIPIIVISGTGEMADVALALRLGVKDFLIKPLENILMLKSSMISVL 125 Query: 125 --------YPSMFNSR----------VEEE-ERLFRDWDAMVDNPAAAAKLLQELQPPVQ 165 + F++R VEEE E +D + +NP AA +LL L P Q Sbjct: 126 KGQDSATHHRQDFSNRWFATTEDTEPVEEELEWHIKD---LQNNPKAARELLVGLMPETQ 182 Query: 166 QVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNG 225 ++NY L + D ++LD L + LAFY LD + HN ALL+RA FN Sbjct: 183 STYGRWQLNYCVLQSIDSLPVILDYTWLLDGQLAFYLLDTSSGDHNATATALLIRAFFN- 241 Query: 226 LLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNAT 285 + L +Q L L L+ + ++ + L G + + L ++ AG+ + Sbjct: 242 ---DYLRNQGNCLESLSHLVSLIEKGMKHSGYASPIKALFGVFDLSDRCLHILPAGIESQ 298 Query: 286 LNTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 L T + ++++G LG A N LS + + +GGRL L Sbjct: 299 LRTSDDSFEVASGEWLGR--EARHNMLS------KLALSPSGGRLSL 337 >UniRef50_D0IC36 Response regulator n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0IC36_VIBHO Length = 385 Score = 154 bits (390), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 96/315 (30%), Positives = 162/315 (51%), Gaps = 21/315 (6%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L GK++LIVED+ +F ++ + G T A +G+D L+ L PDL++ D++MP M Sbjct: 36 LEGKEVLIVEDDPIFSRIISHFLRKEGCTVREAENGLDGLKALREGIPDLLLSDLSMPVM 95 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 GL+ +E + PV+VIS T MAD+A+ALR GV+D L+KP++D+ ++ + + L Sbjct: 96 TGLEFVEEVSMEYPMLPVIVISGTGGMADVAQALRFGVKDFLIKPIEDVMVVKSAILSVL 155 Query: 125 YPS--MFNSRVEEEERLFR-------------DW--DAMVDNPAAAAKLLQELQPPVQQV 167 + +S + ++ F+ W + ++DNP A LL L P Sbjct: 156 EENDGGVSSDADFSQQWFKVSQDGDQPLTEELKWHLEDLLDNPGNARDLLMGLMPEQDSQ 215 Query: 168 ISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL 227 R++Y L +AD +VLD + + +AFY +D AG NG L++RA FN L Sbjct: 216 QGDWRLSYHSLQSADISPIVLDYTWMMDGKMAFYMVDSASAGENGTATTLMIRAFFNEYL 275 Query: 228 QEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN 287 + Q+A + + L+ Q+ + ++++ + G + L ++SAGLNA ++ Sbjct: 276 RSQIADEKGFI----HLVHQIEYAIKRSTYASPIRAMFGILNASDNQLDVLSAGLNAVVD 331 Query: 288 TGEHQVQISNGVPLG 302 V + N LG Sbjct: 332 GTGKAVIVKNNNLLG 346 >UniRef50_B5FFM8 Hnr protein n=3 Tax=Aliivibrio RepID=B5FFM8_VIBFM Length = 368 Score = 135 bits (339), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 88/296 (29%), Positives = 156/296 (52%), Gaps = 20/296 (6%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L K ILIV+D+ +FRS++ + + A +G++ L++L PD+++CD+AMP + Sbjct: 22 LRNKDILIVDDDPIFRSMIRAVLETYSCNVKEANNGLEGLQMLKHSLPDVLLCDLAMPIL 81 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 NG++ +E P++VIS + +M D+AK LRLG +D L+KP+ D++ L + + + L Sbjct: 82 NGIEFVEEAVLEYPMLPIIVISGSGDMQDVAKVLRLGAKDFLVKPISDVSILIKSLSSAL 141 Query: 125 YPSMFNS-----------RVEEEERLFRD---W--DAMVDNPAAAAKLLQELQPPVQQVI 168 S +S R E ++ D W + + + P +LL EL P + Sbjct: 142 KLSEESSLRMQDFSSQWFRTSELDKSCNDELHWHLEYLQEEPNVGRELLFELLPESEAQH 201 Query: 169 SHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQ 228 ++ +++YR L + D L+ D L + L FY +D G NGV++ LL+RA FN ++ Sbjct: 202 ANWKLSYRLLQSTDGMPLIFDYEWLLDGRLFFYLVDSDSGGENGVISCLLIRAFFNDFIR 261 Query: 229 EQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNA 284 +Q N + ++ K ++ + + G F GY + + ++SAGL+A Sbjct: 262 DQQMSTNTISAMVESIEKGMSTMENSQAMSGVF----GYVDLSEQAVFILSAGLDA 313 >UniRef50_Q7MIU6 Response regulator n=56 Tax=Vibrionales RepID=Q7MIU6_VIBVY Length = 368 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 96/316 (30%), Positives = 154/316 (48%), Gaps = 29/316 (9%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K I +V+D+ +FR + ++ S G V + +G+ AL+ L PD+++CD++MP ++G+ Sbjct: 20 KLIQLVDDDPIFRRITSAYLESQGYKVVESENGLQALQQLRECDPDIVLCDLSMPVLDGI 79 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 + +E + P++V+SAT M+D+AKALR G++D L KP+ D L E + L S Sbjct: 80 EFVEEVSLEYPSLPLIVVSATGEMSDVAKALRFGIKDFLPKPIGDYQHLAEAIENTLEDS 139 Query: 128 M--------FNS---RVE------EEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISH 170 M F+S RV+ +E+ L + + DNP +A LL L P Sbjct: 140 MNHMSDQRDFSSQWFRVDGGGELPDEQELHWHLNYLEDNPNSARDLLHALLPDKDTSQGD 199 Query: 171 CRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ 230 + +Y+ L + D LV D L AFY +D GV ALL+RALF+ L Sbjct: 200 WKFSYKLLQSTDMMPLVFDYRWLMNGQFAFYLVDSASVEKQGVATALLIRALFDDYL--- 256 Query: 231 LAHQNQRLPELGALLKQVNHLL----RQANLPGQFPLLVGYYHRELKNLILVSAGLNATL 286 + L A LK + +L R ++ L G ++ ++ AGL++ Sbjct: 257 -----RNLKSFSADLKDIVEILERGIRYSDCACPVNALFGIADLVDGSVEILPAGLDSQW 311 Query: 287 NTGEHQVQISNGVPLG 302 +TG I+ G LG Sbjct: 312 STGFINQHIAAGNRLG 327 >UniRef50_A0KNX4 Response regulator receiver domain n=2 Tax=Aeromonas RepID=A0KNX4_AERHH Length = 323 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/302 (28%), Positives = 144/302 (47%), Gaps = 14/302 (4%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 G +IL+VEDE VFR L ++ + GA A DG++ L + PD+++CD+ MP M+G Sbjct: 5 GLRILVVEDEAVFRHSLVNYLAHDGACVFQAEDGIEGLSAAALYHPDVVLCDLNMPNMDG 64 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +++ + R PV+VISA M + +ALR G D LLKP+ D ++R + CL Sbjct: 65 HEVIACLTARYPHIPVIVISAQSKMEAVERALRAGARDFLLKPISDFGQVRRSIEQCLST 124 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 N ++ L D ++ AA +LL L+PP Q +V + + L Sbjct: 125 ---NHGYGQQLELMEHIDFFREHDQAATRLLAWLKPPGLQEWGPWQVTFEGM-----GNL 176 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 + ++ L +++ G + L+R+L N ++ ++ L + LL Sbjct: 177 FIPDTFKVDDKLLVLVMELPILGVDAAFCGALVRSLMNAPYRQFQRGESLLLTQPHRLLD 236 Query: 247 QVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVPLGTLGN 306 +N L ++ L F + + +E L+ +AGL T H + S G+PLG L Sbjct: 237 YLNLQLVESGLRHSFAMAALLFDQE-DGLVFANAGL-----TSPHWLVRSGGLPLGLLRT 290 Query: 307 AY 308 ++ Sbjct: 291 SH 292 >UniRef50_A4BEJ2 Probable two-component response regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BEJ2_9GAMM Length = 397 Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 79/248 (31%), Positives = 120/248 (48%), Gaps = 8/248 (3%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+VEDE+ R + ++F G + AA+G + L PDL+ICD+ MP M+GL L Sbjct: 8 LLVVEDEKAVRDSIVAYFEDSGYHIIEAANGSEGLTRFEESKPDLVICDLRMPGMDGLHL 67 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL-----REMVFACL 124 L I D+TPV+V+S M D+ +ALRLG D L+KPV DL+ L R + + L Sbjct: 68 LNRIMESTDETPVIVVSGAGVMTDVVEALRLGAADYLMKPVVDLSVLEHSVERALERSLL 127 Query: 125 YPSMFNSRVEEEER---LFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 + + R E E+R L D + + A + Q L P Q V + + Sbjct: 128 FKENYRYRQELEQRNQELQDHVDRLKLDLQAGRAVQQRLLPRFQLQQGGYTVRHDMEPST 187 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPEL 241 G ++D L N L FY DV+ G + L LL++ + E + + Sbjct: 188 YLSGDLVDYFELGPNQLVFYIADVSGHGASSALITLLIKTQIDRYRDELENDTSDIVTNP 247 Query: 242 GALLKQVN 249 G +L+Q+N Sbjct: 248 GQVLRQIN 255 >UniRef50_Q48KH7 Response regulator n=23 Tax=Pseudomonadaceae RepID=Q48KH7_PSE14 Length = 458 Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/321 (26%), Positives = 149/321 (46%), Gaps = 23/321 (7%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 P ++LI++D+ V R+ L ++ G + + A++G+ +++ PDL++CD+ MP+ Sbjct: 66 PKTSAKLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQMFEQENPDLVVCDLRMPQ 125 Query: 64 MNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 M GL+L+ + QTPV+V+S M+D +ALRLG D L+KP++DL L V Sbjct: 126 MGGLELIRQVTAIAPQTPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRA 185 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNP-AAAAKLLQELQPPVQQV-----------ISHC 171 L +R+ E +++R+ + A+ LLQE Q +QV I Sbjct: 186 LD----RARLLTENQVYREKLEKANRELEASLHLLQEDQDAGRQVQMNMLPITPWSIDEF 241 Query: 172 RVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL 231 + ++ + + G +D + E +AFY DV+ G + +LL+ + LL E Sbjct: 242 KFAHQIIPSLYLSGDFVDYFRVDERRVAFYLADVSGHGASSAFITVLLKFMTTRLLFE-- 299 Query: 232 AHQNQRLPEL--GALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAG---LNATL 286 + + LPE +L +N L L ++ G E L G L Sbjct: 300 SRRGGTLPEFKPSDVLGHINRGLISCKLGKHVTMVGGVIDEESGKLTYAVGGHLPLPVLY 359 Query: 287 NTGEHQVQISNGVPLGTLGNA 307 + G+ + G+P+G A Sbjct: 360 SEGQARYLEGRGLPVGLFNEA 380 >UniRef50_C4LC82 Response regulator receiver protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LC82_TOLAT Length = 338 Score = 97.1 bits (240), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 122/260 (46%), Gaps = 14/260 (5%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M + ++ILI+EDE VFR L ++ S + GV+ L + F PD+++CD+ Sbjct: 1 MRHSMSQRKILIIEDEAVFRMTLGAYLRSKNFLVLETRSGVEGLAGVAMFQPDVVLCDLH 60 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP M G +++ I R PV+VIS DI +ALR G D L KP+ D N + E + Sbjct: 61 MPGMPGHQVINCIHRRYPYIPVIVISGMVKFDDITRALREGACDYLPKPITDWNVVTEAI 120 Query: 121 FACLY---PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 C P+ +++ L R D A KL+Q +Q P + ++++ Sbjct: 121 QECSLDNGPTSHYKELQQHRYLLRKDD------YTATKLMQIMQKPSPMQLGQWQIDF-- 172 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 ++ P L +D + EN L +++ + A +++ L + L +E ++NQ Sbjct: 173 --SSTTPLLYVDFYPV-ENALMVVIVELYAGMLDVAFVAAMIKFLLDPLYREYKQNENQL 229 Query: 238 LPELGALLKQVNHLLRQANL 257 +L +N + Q+ + Sbjct: 230 FDSPRRVLGYLNSHICQSGI 249 >UniRef50_Q1N0N5 Response regulator n=1 Tax=Bermanella marisrubri RepID=Q1N0N5_9GAMM Length = 395 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 67/266 (25%), Positives = 124/266 (46%), Gaps = 8/266 (3%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+++DE + R + ++ G + A++G + + PD+++CD+ MP M+GL Sbjct: 7 RVLVIDDEAIVRDSIVTYLEDSGFDVIEASNGTEGIACFNSQNPDIVLCDLRMPNMDGLA 66 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA------ 122 +L+ I TP +VIS MAD+ +ALRLG D L+KP+ DL L + Sbjct: 67 VLQSINKSNPNTPFIVISGAGVMADVVEALRLGASDYLIKPIIDLEVLEHSIKRNLRQLR 126 Query: 123 -CLYPSMFNSRVEEE-ERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 L + ++E + E+L + + + A ++ + + P Q + +Y + + Sbjct: 127 LILQNQNYRQQLERKNEQLEHRLEELRLDQQAGREVQKRMLPDPQSQLKGVEFDYHIIPS 186 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 G +D +S + + FY DV+ G + +LL+ L N L + +Q + Sbjct: 187 LYLSGDFIDYFPISADKIVFYVADVSGHGASSAFITVLLKNLTNRLRRNLRRQSSQEILT 246 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVG 266 +L ++N L A L L G Sbjct: 247 PDNVLSRINKELVDAQLGKHVSLFWG 272 >UniRef50_Q21LQ5 Response regulator receiver n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21LQ5_SACD2 Length = 399 Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 79/314 (25%), Positives = 142/314 (45%), Gaps = 13/314 (4%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 G+++L+++D+ + R + ++ G ADG AL L P L++ D+ MP +G Sbjct: 5 GRRLLVIDDDTIVRQSIAAYLEDSGFLVHQEADGHSALTWLMDNPPCLVLTDLRMPGTDG 64 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL-- 124 L LL+ IR + PV+VIS + D+A+ALR G D L+KP+ D+ L + L Sbjct: 65 LTLLKAIREWDVELPVIVISGAGAVHDVAEALRHGASDYLVKPIVDMEVLVHSIRRALER 124 Query: 125 YPSMFNSR-----VEEEERLFRDWDAMVDNPAAAAKLLQ-ELQPPVQQVISHCRVNYRQL 178 + + +R +E+ + +++ +++ A + +Q +L PP V+Y+ + Sbjct: 125 HELIIENRQYRLELEKANKELKEYIRVLERDQLAGRRVQSKLLPPPAVSFGGINVDYKII 184 Query: 179 VAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ--LAHQNQ 236 + G +D LS LAFY DV+ G + L+ + +EQ ++ Sbjct: 185 PSLYLSGDFVDYGFLSNRYLAFYLTDVSGHGAASAFVTVWLKQIVRRFFREQEIFNTKDS 244 Query: 237 RLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAG---LNATLNTGEHQV 293 + +LLK +N + ++ + VG + V AG L + G + Sbjct: 245 FERDTASLLKLINKEVIRSKVGAHMTCFVGVIDTHTHEMRYVVAGHLPLPLLIANGRAEY 304 Query: 294 QISNGVPLGTLGNA 307 G PLG +A Sbjct: 305 LEGKGKPLGIFEDA 318 >UniRef50_C0QLH6 Sensor protein n=2 Tax=Deltaproteobacteria RepID=C0QLH6_DESAH Length = 418 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 42/111 (37%), Positives = 68/111 (61%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 G +IL ++DE R + S+ G + A DG + L+L PDL++CD+ MP M+ Sbjct: 5 TGIKILTIDDEPYIRESIKSFLEDFGFDVIAAEDGRNGLKLFESQRPDLVLCDLRMPEMD 64 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL 116 GL++LE + +TP++V+S N+ D +ALRLG D ++KP++D+N L Sbjct: 65 GLEVLEAVTKTSPETPIIVVSGAGNILDTVEALRLGAWDYIIKPIQDMNVL 115 >UniRef50_C5BR05 Response regulator receiver domain protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BR05_TERTT Length = 406 Score = 90.5 bits (223), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 75/283 (26%), Positives = 129/283 (45%), Gaps = 10/283 (3%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 Q+L+++D+ + RS + ++ G + DG E L DL+I D+ MP + GL Sbjct: 7 QLLVIDDDAMIRSSVVTYLEGAGFKVHHSRDGASGCEWLATHPVDLVITDLCMPDVGGLS 66 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 +L +++ PV+V+S + D+ +ALR G D L+KP+ DL L V L Sbjct: 67 ILRSVKHCHPNLPVIVLSGVGVVRDVVEALRQGAADYLVKPLVDLEVLVHSVKRVLERQS 126 Query: 129 F---NSRVEEE----ERLFRDWDAMVDNPAAAAKLLQELQPPVQQV-ISHCRVNYRQLVA 180 N R EE R R++ ++++ A + +Q PV + +S +++ + + Sbjct: 127 LLHDNQRYREELEKANRDLREYVRLLEHDQKAGRRVQSKLLPVSPLTVSDITLSFEVIPS 186 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR--L 238 G +D LS LAFY DV+ G + L L L +EQ ++ Sbjct: 187 LYLSGDFIDYGFLSRRYLAFYLTDVSGHGAAPAFVTVWLNQLVRRLFREQRIFDSEESFK 246 Query: 239 PELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAG 281 + +LLK VN + ++ + LVG + + + V AG Sbjct: 247 RDAASLLKLVNQEVIRSKIGCHLTSLVGVIDTQTREMRYVVAG 289 >UniRef50_A3WMP1 Response regulator of sigma subunit, serine phosphatase (CheY-RsbU) n=2 Tax=Idiomarina RepID=A3WMP1_9GAMM Length = 333 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 60/257 (23%), Positives = 125/257 (48%), Gaps = 6/257 (2%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K +L++ED++VF+S+++ + G + TPD+++CD+ +P +NGL Sbjct: 4 KHVLLIEDDRVFQSVVEQFLIQQNYAVHCVEYGEQGVSWCQQNTPDIVLCDLMLPDINGL 63 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 +++E + + PV+VISA+++M DI +A+RLG D L+KP+ L+ + + + CL Sbjct: 64 EVIERLLSLAPHLPVIVISASDDMGDIREAVRLGAWDYLVKPIDRLDTITQAIEHCLQRH 123 Query: 128 MF-NSRVEEEERLFRDWDAMVDNPAAAAKLLQEL--QPPVQQVISHCRVNYRQLVAADKP 184 + V + L + + + A+L +L + P+ H Q+ A + Sbjct: 124 RLEETYVSDIWELDSHINQLYQDDHIVARLANDLLAKQPLNVGDYHIE---SQVAAGAEA 180 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 + +D L+E + ++ L+L+ L L+++ LA + + + +L Sbjct: 181 NIWIDYRPLTEGRVLIVMATAHSQTEQNLIPLLVLKTLIAPLIRQHLAGSDDTILDPRSL 240 Query: 245 LKQVNHLLRQANLPGQF 261 ++ +N L + + F Sbjct: 241 VQHINFELCHSRVRTAF 257 >UniRef50_B8FJD4 Sensor protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FJD4_DESAA Length = 949 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 13/158 (8%) Query: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 QP+ +IL V+DE+ ++ + ++ VLA DG+ LE +PDL++ D+ MP Sbjct: 4 QPI---KILAVDDEKAIQNSVSAYLQDYDFEVVLADDGIMGLEKFRTESPDLVLLDLRMP 60 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 RM+GL++L+ I+ TPV+VIS +++ ALR G D L+KP+ DL+ L + Sbjct: 61 RMDGLQVLKEIKKESPLTPVIVISGAGGVSEAVNALRNGAWDYLIKPINDLDILYHAIIN 120 Query: 123 CLYPSM-------FNSRVEEEERLFRDWDAMVDNPAAA 153 L + F ++ E E +R A+++N +A Sbjct: 121 ALEKARLTRDNKEFAEKIRESEERYR---ALIENAGSA 155 Score = 47.4 bits (111), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 5/107 (4%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+ ED V + + S LG A+G +A++ L ++ D MP M+G + Sbjct: 695 ILVAEDNPVNQKVALSILKKLGLRAEAVANGREAVKALCEKKYTMVFMDCQMPDMDGYEA 754 Query: 70 LEHIRNRGD-----QTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 IR+R +TPV+ ++A D K + G++D L KPV+ Sbjct: 755 TRRIRSRRSCVLDPKTPVIAMTAHAMEGDRKKCIEAGMDDYLSKPVE 801 >UniRef50_Q7MSI2 Putative uncharacterized protein n=1 Tax=Wolinella succinogenes RepID=Q7MSI2_WOLSU Length = 431 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 54/154 (35%), Positives = 82/154 (53%), Gaps = 3/154 (1%) Query: 4 PLVGK-QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 P K IL VEDE+ + + ++A+DG +AL + PD++I DI MP Sbjct: 6 PFYKKLSILFVEDEREVQEAALNVLERYIDHILVASDGEEALAIFKEKRPDIVITDIKMP 65 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 M+GL L + I+ GD TPV+VISA +N +++A RLGVE LLKP+ D+ L + Sbjct: 66 VMDGLALTKEIKELGD-TPVIVISAFDNEEFVSEAARLGVETYLLKPI-DIQLLLASINR 123 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKL 156 C+ + + L R++ +VD A K+ Sbjct: 124 CIELLIRREEARQNRSLLREYKRIVDETAMICKI 157 >UniRef50_C1TKX4 Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TKX4_9BACT Length = 593 Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 71/133 (53%), Gaps = 4/133 (3%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 I++V+D R L G V + G DALE L PDLM+ DI MP ++GL Sbjct: 3 SIMVVDDNVSVRESLALCLEDFGHVVVKHSSGEDALEALETDVPDLMLLDIMMPGISGLD 62 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 +LE + R PV+++S ++AD+ KA+RLG D L+KPV D+ LR V L Sbjct: 63 VLERVVPRFPDLPVIMVSGDGDVADVVKAIRLGTWDYLMKPVTDVEMLRHAVDQALA--- 119 Query: 129 FNSRVEEEERLFR 141 + ++ E R +R Sbjct: 120 -KASLKRENREYR 131 >UniRef50_C7LTV4 Response regulator receiver modulated diguanylate cyclase n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LTV4_DESBD Length = 335 Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 94/177 (53%), Gaps = 7/177 (3%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+DE LL + G +LA G AL+L PDL++ D+ +P ++GL Sbjct: 7 RILLVDDEPTLLELLGDFLREQGHEVILADTGTKALDLYNSELPDLVLLDLKLPDLSGLD 66 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 +L+HI +R D+T ++VIS + D ++LR G D L+KP +L E V + S+ Sbjct: 67 VLKHISSRDDETGLIVISGVGSTDDAIESLRRGAWDFLVKPFLNL----EFVLHSVNKSI 122 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQEL--QPPVQQVISHCRVNYRQLVAADK 183 ++ E RL+R+ + A+L QE+ + +++ + + Y++L D+ Sbjct: 123 EKVHLKRENRLYREH-LEEEVQRRTAELRQEIIARKRIEEDLRRSEMRYKELSLTDE 178 >UniRef50_A8ZX41 Response regulator receiver protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZX41_DESOH Length = 846 Score = 80.5 bits (197), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 46/115 (40%), Positives = 65/115 (56%), Gaps = 1/115 (0%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 P +L+VED+ R L+ + + G T ADG+DAL LG + DL++ DI MP Sbjct: 721 PASAASVLLVEDDADTRMLITRFLETDGYTVTACADGIDALLCLGKQSFDLILSDIDMPN 780 Query: 64 MNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV-KDLNRLR 117 ++G KLLE I +G PV+ +++ D + L LG D + KPV KDL RLR Sbjct: 781 LDGFKLLEMINQKGVSVPVIFLTSRAGHEDETRGLELGAVDYIKKPVQKDLLRLR 835 Score = 54.3 bits (129), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 61/106 (57%), Gaps = 5/106 (4%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAAD-GVDALELLGGFTPDLMICDIAMPRMNGL 67 +I+ ++D++ +L++ + S G V+ A+ G D L ++ PDL++ DI MP+M+G Sbjct: 9 RIVYIDDDRNQLALVERFLS--GPFEVITAENGEDGLRIISETPPDLVLLDINMPKMDGY 66 Query: 68 KLLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVK 111 ++ ++ + PV+ ++A E D A+A G D L+KPVK Sbjct: 67 EVCTRLQATPKTSFIPVVFLTAMEEEKDRARAFAAGASDFLVKPVK 112 >UniRef50_C0QLH7 Sensor protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLH7_DESAH Length = 667 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 47/138 (34%), Positives = 77/138 (55%), Gaps = 4/138 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL ++DE R+ + ++ + A +G ++ PDL++ D+ MP M+GL+ Sbjct: 8 RILTIDDEAFIRTSIRNYLEDCEFEVIEAENGRIGIDKFEREKPDLVLLDLRMPEMDGLQ 67 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 LLE ++ TP++VIS T N++ + +AL LG D +LKP++D++ L V CL S Sbjct: 68 LLEILKRLSPDTPLIVISGTGNISAVVEALHLGAWDYILKPIQDMSVLLHSVTKCLKESQ 127 Query: 129 F---NSRVEEE-ERLFRD 142 N +E ERL RD Sbjct: 128 LKRENKAYQEHLERLVRD 145 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 31/114 (27%), Positives = 52/114 (45%), Gaps = 4/114 (3%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP--DLMICDIAMPRM 64 G IL+V+D++ + F +LG + G++ALE + D I D MP M Sbjct: 543 GLGILVVDDDRNIADMYKEGFEALGYDVTVYYSGMEALEFFRNNSEKIDFAITDQTMPHM 602 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK--DLNRL 116 G+ L + PV++ S + KA G+ ++KPV +L+R+ Sbjct: 603 TGVDLSRGMLCVKPDLPVILCSGYPGEVNEEKATDAGIRRFVMKPVTVGELSRM 656 >UniRef50_Q12PI4 Response regulator receiver protein n=22 Tax=Shewanella RepID=Q12PI4_SHEDO Length = 386 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/243 (25%), Positives = 105/243 (43%), Gaps = 24/243 (9%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+D+ VFR L+ + S AT AA G LEL D+++ D++MP + GL + Sbjct: 8 VLLVDDDPVFRQLVTDYLISQQATVFQAASGHQGLELFEKKQIDVVVADLSMPGLGGLNM 67 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 L+ + P +VIS MAD+ +ALR+G D L+KP+ DL + + + + ++ Sbjct: 68 LKQLIEMDPSIPAIVISGHSVMADVVEALRIGASDYLIKPIPDLFIIGQAIEQAIEDAVN 127 Query: 130 NS-----RVEEEERL------------------FRDWDAMVDNPAAAAKLLQELQPPVQQ 166 S + EE L D +++ A AAK +Q+ P Sbjct: 128 QSANANLQSSEESALQTMLESEMGPLNQLSYQELNDNLHLLEQSALAAKSVQQQLFPASN 187 Query: 167 V-ISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNG 225 V +NY D +D + + L Y ++ +LLR+ N Sbjct: 188 VDYPLAEINYSLFKNDDISAYFIDSTMVGDKHLICYMAHFHPEDNSAAFGCVLLRSFVNQ 247 Query: 226 LLQ 228 L+ Sbjct: 248 KLK 250 >UniRef50_Q1Q8Y0 CheA signal transduction histidine kinases n=2 Tax=Psychrobacter RepID=Q1Q8Y0_PSYCK Length = 2301 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/117 (35%), Positives = 68/117 (58%), Gaps = 3/117 (2%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+V+D R + + G VLA DG+DALE+L TPDLM+ DI MPRM+G ++ Sbjct: 2176 ILVVDDSVTVRKVTSRFLERQGFNVVLAKDGIDALEILQEMTPDLMLLDIEMPRMDGFEV 2235 Query: 70 LEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +R+ G P+++I++ +AL +GV D + KP ++ N+L + + + L Sbjct: 2236 ATQVRHNGRLQHLPIIMITSRTGEKHRERALEIGVNDYMGKPFQE-NQLLDKIQSLL 2291 >UniRef50_D0E8E5 Putative adenylate/guanylate cyclase n=1 Tax=Lyngbya majuscula 19L RepID=D0E8E5_9CYAN Length = 1156 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 79/146 (54%), Gaps = 6/146 (4%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-GFTPDLMICDIAMPRMNGL 67 +ILIV+DE V R ++ ++ S A +G++ALE+L GF PDL++ D+ MPRM G Sbjct: 746 KILIVDDEPVNRQVISNYLSMENYAIATATNGLEALEMLSTGFQPDLILLDVMMPRMTGY 805 Query: 68 KLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD---LNRLREMVFA 122 ++ IR + + PV++++A ++D+ + GV D L KP L R++ + Sbjct: 806 EVCAKIRQKFLPSELPVIMLTANNQISDLVEGFTFGVNDYLTKPCSKHELLARIKSHLRL 865 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVD 148 S + V + F ++++VD Sbjct: 866 SKITSAYGKFVPHDFLRFLGYESIVD 891 >UniRef50_C7LPI5 Sensor protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LPI5_DESBD Length = 544 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/109 (37%), Positives = 63/109 (57%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 +QP +L+V+D+ R+ + SS G T + A +G + L++ PDL+I D+ M Sbjct: 4 SQPKRPTTVLVVDDDPFIRATTGASLSSRGFTILQAGNGQEGLDMFQAHGPDLLIVDLKM 63 Query: 62 PRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 P MNGL+LL + TPVLV+S + + +ALRLG D L+KP+ Sbjct: 64 PVMNGLELLSRLSGVTPHTPVLVVSGEGGLDEAVEALRLGAWDYLVKPI 112 >UniRef50_A4V7G6 Putative two-component regulator sensor histidine kinase fused response regulator protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=A4V7G6_PSEFS Length = 1946 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 62/103 (60%), Gaps = 5/103 (4%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF-TPDLMICDIAMPRMNGLK 68 +L+V+D + +RS L+ F+ G T + A DG +AL LG PDLM+ D+ MP MNG + Sbjct: 1822 VLVVDDSRSYRSQLERIFTGFGYTVITAVDGQNALHKLGLIDKPDLMLVDVEMPNMNGFE 1881 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKP 109 E IR + D TP+++I+ + + KA+R GV LLKP Sbjct: 1882 FTEAIRRKPEFDDTPIIMITTRTGLEE--KAMRAGVTKYLLKP 1922 >UniRef50_A0L8E1 Putative PAS/PAC sensor protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8E1_MAGSM Length = 504 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/105 (39%), Positives = 65/105 (61%), Gaps = 4/105 (3%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL-GGFTPDLMICDIAMPRMNGLK 68 I +V+D R +LD ++ LG VL DG++A+ + G PDLM+ D+ MP MNG Sbjct: 6 IWVVDDSATIRLMLDKFYRELGYRVVLMKDGLEAITAVESGNKPDLMLLDVDMPGMNGFD 65 Query: 69 LLEHIRNRGDQT---PVLVISATENMADIAKALRLGVEDVLLKPV 110 + IR DQ P+++++++++ ADI +A LGV++ LLKPV Sbjct: 66 VCRIIRQHHDQPPTLPIIMLTSSDDEADIERAFALGVDEYLLKPV 110 >UniRef50_A7VQH6 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQH6_9CLOT Length = 544 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 63/107 (58%), Gaps = 3/107 (2%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVL---AADGVDALELLGGFTPDLMICDIAMPRM 64 K +L+++DE FR + +F + + A +G D L L+ PD+ + DI MP M Sbjct: 2 KNVLLIDDEFFFRKAIHHYFQDFNSEFTICGEANNGRDGLRLIQELKPDIALVDITMPLM 61 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 +G++++E R +G QT +++++ KA+RLGV+D LLKP++ Sbjct: 62 DGIQMVESARAQGLQTKMVILTGYSEFEYAQKAIRLGVQDYLLKPIR 108 >UniRef50_C5CE55 Response regulator receiver modulated serine phosphatase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE55_KOSOT Length = 381 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/244 (28%), Positives = 121/244 (49%), Gaps = 17/244 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K++L+++D++ R LL G V A+G +L+ F PDL++ D+ +P +NGL Sbjct: 2 KRVLVIDDDRTVRMLLKVILKKAGYDVVECANGKTSLKKAESFKPDLILLDLMLPDINGL 61 Query: 68 KLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 +LLE ++ + P++V++ + + + ALR G D + KP L + Sbjct: 62 QLLETFTSKENLKDVPIIVLTGSTDEENKLTALRSGAVDFITKPFLSEEVLLRVRTQLRI 121 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 S+ +S E E+L D+ AAAAK+ + L P RVN+ + + G Sbjct: 122 HSLIHSLQEAVEKL-------QDDVAAAAKIQKALVPVSTPQGFRDRVNWIYEPSYNVGG 174 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQ---EQLAHQNQRLPELG 242 + D L++ Y DV AGH GV AA +L +F+ ++ E + +Q ++L EL Sbjct: 175 DIFDFIKLNDEKELIYLADV--AGH-GVKAA-MLSVIFHRFVEDYVENIKNQGEKL-ELS 229 Query: 243 ALLK 246 L++ Sbjct: 230 KLIR 233 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 64/101 (63%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+D++ R L S G T LA DGV+ALE++ PD ++ D+ MPR++GL+ Sbjct: 4 RILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLDGLE 63 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 + +R+ GD P+LV++A +++++ L G +D L KP Sbjct: 64 VCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKP 104 >UniRef50_B1ZXR5 Response regulator receiver modulated serine phosphatase n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZXR5_OPITP Length = 602 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 47/140 (33%), Positives = 76/140 (54%), Gaps = 10/140 (7%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+DE++ +L +F G +A G +AL L+ DL+I DIAMP MNGL+L Sbjct: 6 VLVVDDEELILHVLLRFFRRRGDRCDVAPGGAEALRLVEAQRYDLVISDIAMPEMNGLEL 65 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 + ++ R +++S DI +AL++GV D + KP+ DL L +M Sbjct: 66 IRRVKERQPDAVCILMSGLGTRGDIIEALKIGVFDFIDKPIPDLAAL----------TMV 115 Query: 130 NSRVEEEERLFRDWDAMVDN 149 R E RL R+ +A+++N Sbjct: 116 IDRAAESGRLVRERNALLEN 135 >UniRef50_Q1IUD6 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1IUD6_ACIBL Length = 232 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 41/101 (40%), Positives = 62/101 (61%), Gaps = 1/101 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+DEQ +L + S+ G +A DG A E++ + PDL+I DI+MP M+GL Sbjct: 4 RILVVDDEQQITRVLRTTLSAKGYEIRVANDGETAFEIMKDWVPDLVITDISMPNMDGLA 63 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 L + +R R Q P++V+S E+ KAL LG +D + KP Sbjct: 64 LCKELRARS-QVPIIVLSVKEDERTKVKALDLGADDYITKP 103 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 6/119 (5%) Query: 1 MTQPLVG-----KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLM 55 M+ P VG ++IL+V+DEQ R L + S G AADG +AL LL GF P + Sbjct: 1 MSMPSVGARPGKERILVVDDEQNARVALRTILSEEGYEIAEAADGEEALALLPGFAPAAV 60 Query: 56 ICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLN 114 + D+ MPRM+G+ LL R +G ++++A ++ +A+R G E+ L+KP+ D+N Sbjct: 61 LADVRMPRMDGINLLRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPL-DVN 118 >UniRef50_B3PDM6 Response regulator n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PDM6_CELJU Length = 406 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 86/347 (24%), Positives = 149/347 (42%), Gaps = 50/347 (14%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL--GGFTPDLMICDIAMP 62 L +++LI++D+ + R + ++ G D AL LL P L+I D+ M Sbjct: 10 LADRKLLIIDDDALVRQSIVTYLRDSGFLVSDTGDAQAALALLQDADHLPHLVITDLRMA 69 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 ++GL+LL+ + + + PV+VIS M+D+ ALRL D L+KP+ DL E++ Sbjct: 70 GVDGLQLLQELHDLYPKLPVIVISGAGVMSDVVAALRLCARDYLIKPIVDL----EVLVH 125 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQL---- 178 + + +E E +R+ AA +L + L+ + I+ RV R + Sbjct: 126 SVNRVLDQCELESENLRYRE-----QLEAANRELKENLRALERDHIAGRRVQRRMMPSGI 180 Query: 179 ------VAADK--PGLVL-----DIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNG 225 VAA P L L D A + LAFY DV+ G + + L+ L + Sbjct: 181 STEEGYVAAHTIAPSLFLSGDFVDYAHIKRRYLAFYLADVSGHGASSAFVTIWLKYLVSR 240 Query: 226 LLQEQLAHQNQRLPELGA--LLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLN 283 ++++ ++ E GA +L+Q+N L + L VG Sbjct: 241 MVRDDGLFGDENSFEQGANTMLQQINRELHETRLSHHLTFFVGV---------------- 284 Query: 284 ATLNTGEHQVQISNGVPLGTL----GNAYLNQLSQRCDAWQCQIWGT 326 TG+ + ++ +P+ L G YL + + ++ IW T Sbjct: 285 IDTFTGQMRYVVAGHLPMPILITDTGAQYLQGMGKPVGIFKDVIWST 331 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 40/104 (38%), Positives = 63/104 (60%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +G++IL+V+DEQ R L S G LA +G ALEL+ PDL++ DI MP M+ Sbjct: 1 MGRKILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 G+++L+ I+ R Q PV++I+ + +A++ G D +LKP Sbjct: 61 GIEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKP 104 >UniRef50_B1XIW8 Two-component response regulator (RsbV-like) n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XIW8_SYNP2 Length = 376 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 85/306 (27%), Positives = 142/306 (46%), Gaps = 24/306 (7%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 QIL+++D+ R LL+ G A+DG L+L PDL+I D MP MNG++ Sbjct: 3 QILVIDDDLAMRVLLERTLKRKGYQVTTASDGKTGLDLAIATRPDLIISDWMMPEMNGIE 62 Query: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + + ++ D T +++SA + + D L G +D L KP+ + L V + L Sbjct: 63 VCQAVKQHPDLSTTFFILLSALDAVEDKVMGLDAGADDFLCKPISS-HELEARVRSGLRI 121 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQP-PVQQVISHCRVNYRQLVAADKPG 185 + ++R A+ AA+ ++ L P P+ Q H +++ + ++ G Sbjct: 122 CRLTQDLTAQKR------ALESELTEAAQYVKSLLPDPLYQ--DHLQIDSCFIPSSQLGG 173 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL-QEQLAHQNQRLPELGAL 244 D LS +L FY LDV+ GH G+ AAL ++ N L + + + R P+ A+ Sbjct: 174 DGFDYFWLSPQELVFYLLDVS--GH-GLKAALPSISILNLLRSRNKTKGLDYRSPQ--AV 228 Query: 245 LKQVNHLLRQANLPGQ-FPLLVGYYHRELKNLILVSAGLNATL----NTGE-HQVQISNG 298 L +N + GQ F + G Y + + + AG + NTGE Q+ + G Sbjct: 229 LNHLNRTCQFLEQQGQYFTMWYGIYDVDDRIVTYACAGHPPAVLVKPNTGEPPQLLKAQG 288 Query: 299 VPLGTL 304 P+G L Sbjct: 289 FPIGML 294 >UniRef50_A6QCV7 Two-component response regulator n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QCV7_SULNB Length = 229 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 59/101 (58%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L VED++ R AADGV+A E+ PDLM+ DI +P+M+GL+L Sbjct: 9 LLYVEDDEALREQFLRVLKPAFNEVYEAADGVEAYEMYQTCKPDLMVVDINIPKMSGLEL 68 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 +E IR + TP++++SA + + KA+ LG+ ++KPV Sbjct: 69 IEKIRKEDENTPIMILSAYSDREKLLKAVTLGLSQYMIKPV 109 >UniRef50_C4G516 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G516_ABIDE Length = 371 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 42/110 (38%), Positives = 70/110 (63%), Gaps = 5/110 (4%) Query: 8 KQILIVEDEQVFRSL---LDSWFSSLGATTV-LAADGVDALELLGGFTPDLMICDIAMPR 63 ++++I++DE R + L W + LG V AADG LEL+ +PD++I D+ MPR Sbjct: 3 RKVIIIDDEPWTRGVIMKLAHW-NRLGLEAVGEAADGEAGLELIHRVSPDIVITDVRMPR 61 Query: 64 MNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDL 113 +NG++L+ +R G + P+L+IS ++ + + AL+L V D LLKP+K + Sbjct: 62 INGIELVRALRTEGFRIPILIISGYDDFSYVRSALQLDVTDYLLKPIKGI 111 >UniRef50_Q8YY73 Sensor protein n=2 Tax=Nostocaceae RepID=Q8YY73_ANASP Length = 1186 Score = 77.8 bits (190), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 43/130 (33%), Positives = 64/130 (49%), Gaps = 5/130 (3%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L G IL+V+D+ R L + GA AA V+AL + F PDL++CDI MP M Sbjct: 1058 LTGTHILVVDDDADMRELAEFILIQFGAQVTTAASAVEALNIFSQFIPDLLLCDIGMPEM 1117 Query: 65 NGLKLLEHIR----NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 +G L+ IR G P + ++A + +AL G + KPV+ L + + Sbjct: 1118 DGYSLMRQIRQWLPQEGGTIPAIALTAYAGEINQQQALAAGFHQHISKPVEP-EELVQAI 1176 Query: 121 FACLYPSMFN 130 F L+P F+ Sbjct: 1177 FQLLHPCFFS 1186 >UniRef50_C6D6B5 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D6B5_PAESJ Length = 542 Score = 77.4 bits (189), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 71/118 (60%), Gaps = 8/118 (6%) Query: 10 ILIVEDEQVFRSLLDSWF-SSLGATTVL--AADGVDALELLGGFTPDLMICDIAMPRMNG 66 ILIV+DE +FR L SS G+ V A DG +ALE++ PD+++ DI MPRM+G Sbjct: 4 ILIVDDEAIFRRGLRKMIESSSGSWEVAGEAKDGYEALEMVESLKPDVLLTDIRMPRMDG 63 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 L+L++ + R + V+V+S + + ++LR GV D L+KPV+ RE +F L Sbjct: 64 LQLIQIAKERFPKLLVIVLSGFDEFTYLQQSLRHGVRDYLMKPVE-----REELFKTL 116 >UniRef50_C0QLH4 Two-component response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLH4_DESAH Length = 244 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 42/102 (41%), Positives = 62/102 (60%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K+IL++EDEQ + + G +A DGV LEL + PDL+I DI +P ++GL Sbjct: 7 KRILVIEDEQHIAEGIKLNLNMQGYGVRIAPDGVAGLELWRQWHPDLIILDIMLPMIDGL 66 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 +L+ IR+ ++ PVL++SA N D + LR GV+D L KP Sbjct: 67 TVLKKIRSEDEKLPVLILSAKGNAEDRVRGLRCGVDDYLAKP 108 >UniRef50_Q30VN8 Putative PAS/PAC sensor protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30VN8_DESDG Length = 489 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 44/141 (31%), Positives = 70/141 (49%), Gaps = 1/141 (0%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 T P +L VED+ V R + +W G T + A DG L++ TPDL++ D+ + Sbjct: 3 TAPAQQATVLTVEDDPVIRETIAAWLEDSGLTVLQAEDGSKGLDVFRRHTPDLVLLDLGI 62 Query: 62 PRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVF 121 P M+G LL+ + TPV+++S T + A + G D + KPV ++ L + V Sbjct: 63 PGMSGESLLKLMVQEQPDTPVIIVSGTAEIDAAISAFKNGAWDFITKPVPNMELLEKTVR 122 Query: 122 ACLYPSMFNSRVE-EEERLFR 141 CL R++ E R F+ Sbjct: 123 NCLERKSLRERLDAAETRYFQ 143 >UniRef50_B0SGQ1 Response regulator n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SGQ1_LEPBA Length = 296 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 62/103 (60%), Gaps = 1/103 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL V+DE+ R L +F T LA+DG++AL + T DL+I DI++P++NG++ Sbjct: 2 KILFVDDEETIRELFWEYFKDEFNVT-LASDGMEALAISNQNTFDLIISDISLPKLNGIQ 60 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 ++ +R G+QTP LVI+ ++ R+G D LKP + Sbjct: 61 FIQKLRADGNQTPFLVITGDSDIQIAIDVFRMGAVDFFLKPFR 103 >UniRef50_Q2IQQ6 Response regulator receiver domain protein (CheY-like) n=3 Tax=Anaeromyxobacter RepID=Q2IQQ6_ANADE Length = 386 Score = 77.0 bits (188), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 63/102 (61%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL V+D + R+++ LG + A DGV LE L DL++ D+ MP M+G + Sbjct: 4 ILTVDDSRAVRTIVGKQVKELGFDVLEAEDGVQGLEQLAQAQVDLVLLDVTMPNMDGPAM 63 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 L+ +R+ G+QTPV+++++ + +A A++LG+ D +LKP K Sbjct: 64 LQSMRDGGNQTPVIMLTSESKRSIVAGAMKLGIADYILKPFK 105 >UniRef50_Q1D7F8 Sigma-54 activator protein ActB n=7 Tax=Cystobacterineae RepID=Q1D7F8_MYXXD Length = 553 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 58/100 (58%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+DE+ R+ L S G AA G ALE+L G + D ++ D+ MP M+GL++ Sbjct: 6 VLVVDDEEAVRTFLSELLGSAGYQVRCAASGTQALEMLSGGSFDAVLLDVVMPEMSGLEV 65 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 L ++ G PV+V+SA D +A+++G D L KP Sbjct: 66 LRRYQSMGGGAPVIVLSALAGADDAVRAMKMGASDYLAKP 105 >UniRef50_C6MU29 Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor n=1 Tax=Geobacter sp. M18 RepID=C6MU29_9DELT Length = 556 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 67/110 (60%), Gaps = 3/110 (2%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M+ P+ ++LIV+DE++ R L + +G V A +G +AL++ PD++ D+ Sbjct: 1 MSDPI---KVLIVDDEKMLRLNLRALLEDVGLRVVEAENGREALDVFASERPDIVFTDLR 57 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 MP M+G+ L+ +++ +TPV+V+S T M D +A+RLG D + KPV Sbjct: 58 MPVMDGMALIAALKSESPETPVIVLSGTVAMTDAIEAVRLGAWDYVTKPV 107 >UniRef50_B8HWK7 Sensor protein n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HWK7_CYAP4 Length = 1331 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/111 (36%), Positives = 63/111 (56%), Gaps = 4/111 (3%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L G ++L V+D + R L + S GA +AA G++AL+LL F PD++ICDI MP M Sbjct: 1206 LAGLKVLSVDDREDARELFATVLSLYGAEARVAASGMEALDLLTTFKPDVLICDIGMPGM 1265 Query: 65 NGLKLLEHIR----NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 +G LL+ IR +G P + ++A D +AL G + + KP++ Sbjct: 1266 DGYTLLQRIRALPIEQGGTVPAIAVTAHAREEDQQRALESGFQGHIAKPIE 1316 >UniRef50_Q2JX03 Response regulator n=2 Tax=Synechococcus RepID=Q2JX03_SYNJA Length = 121 Score = 76.3 bits (186), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 41/121 (33%), Positives = 67/121 (55%), Gaps = 3/121 (2%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + K+IL++EDE R+ L G TV A+DG + L+++ PDL++CD+ MP++N Sbjct: 1 MSKRILVIEDEPAIRTYLQKVLQRAGYDTVAASDGEEGLQMVHALLPDLVLCDVVMPKLN 60 Query: 66 GLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G +L+ +R P + +S+ + D+ + LRLG L KP+ D N L + A Sbjct: 61 GYGVLDAVRWGRSTAHIPFVFLSSKTSREDMEEGLRLGSNAYLTKPI-DQNHLLRAIAAQ 119 Query: 124 L 124 L Sbjct: 120 L 120 >UniRef50_Q1Q5K3 Sensor protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q5K3_9BACT Length = 395 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 45/143 (31%), Positives = 81/143 (56%), Gaps = 10/143 (6%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 MT P ++LIVED++ R +L+ ++LG ++ A +G+ AL + PDL++ DI Sbjct: 1 MTNP---ARVLIVEDKKTSRDILNERVNALGHISIPAENGLSALAQIREQPPDLILLDIM 57 Query: 61 MPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP M+G ++L H+++ PV++ISA ++M I + + G +D L KP + L+ Sbjct: 58 MPEMDGYEVLCHLKDSASWRHIPVIMISAIDDMKSIIRCIEKGADDYLTKPYNPV-LLKA 116 Query: 119 MVFACLYPSMFNSRVEEEERLFR 141 + +CL R+ ++E +R Sbjct: 117 RIGSCL----MKKRLHDQEEQYR 135 >UniRef50_B0AAH6 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AAH6_9CLOT Length = 224 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 60/102 (58%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 IL++ED + R L+ + G +T A DG L++L DL+ICDI MP M+G + Sbjct: 3 NILVIEDNKNMRKLICATLKQNGYSTFEAEDGEVGLDVLDTTHIDLIICDIMMPNMDGYE 62 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 E +R+ +TP+++++A E + D K +G +D ++KP+ Sbjct: 63 FTETLRDGHCETPIIIVTAKEQLEDKKKGFSIGADDYMVKPI 104 >UniRef50_Q7URS3 Putative two-component system response regulator n=1 Tax=Rhodopirellula baltica RepID=Q7URS3_RHOBA Length = 131 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 42/104 (40%), Positives = 59/104 (56%), Gaps = 4/104 (3%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +LIV+DE R + W SS G +T A DG+D L PDL++ D+ MPRMNG+ Sbjct: 4 VLIVDDEPDIRESVQRWLSSAGMSTGFACDGMDCLAQAAKLCPDLIVMDVLMPRMNGITA 63 Query: 70 LEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 + +RN TP+LV+SA+ +AD +A G VL KP + Sbjct: 64 IRELRNNDKFATTPILVLSAS--LADENEAYIAGANQVLAKPYQ 105 >UniRef50_B0SE00 Sensor protein n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SE00_LEPBA Length = 1065 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 82/302 (27%), Positives = 133/302 (44%), Gaps = 25/302 (8%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP-DLMICDIAMPRMNGL 67 ++++V+DE + R +L + + +G AA+GVDA+ L+ P +LM+ DI MP M+G Sbjct: 694 RVIVVDDEPINRQVLKNHLTLIGCEVREAANGVDAIRLVRDEGPFELMVLDIMMPGMSGY 753 Query: 68 KLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 + +R Q P+L ++A +ADI AL G D L KP RE++ Sbjct: 754 DVCTVLRESYSLYQLPILFLTAKNQIADIIAALEAGGNDYLAKPFDK----RELISRAKN 809 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 VEE+ + A+ + A KL + P + + + G Sbjct: 810 LITLKKAVEEQNKFI----AIQNELGLARKLQYSILPEEAPNVVGIKTEFYYEPMDSIGG 865 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 D A+SE +L DV+ GH G+ AAL+ + +L+ + Q + E LL Sbjct: 866 DFFDFHAISETELGVLIADVS--GH-GIPAALV-----SAMLKIAFSTQVRLAKEPSQLL 917 Query: 246 KQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL--NTGEHQVQISNGVPLG 302 Q+N L + G F Y + E K +I G + GE + ++S +P G Sbjct: 918 NQINSTL-LGKMKGAFVTASYVYINLETKEMIHARCGHPPLIINRRGESKAKLS--IPQG 974 Query: 303 TL 304 L Sbjct: 975 KL 976 >UniRef50_B5XRS9 Response regulator n=9 Tax=Enterobacteriaceae RepID=B5XRS9_KLEP3 Length = 404 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 99/216 (45%), Gaps = 6/216 (2%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + +LIVED V+R LL + G A +GV AL +L L+I D MP M Sbjct: 1 MSAHHVLIVEDSLVYRRLLSRMLTQWGYIVSEAENGVAALAILENQPVSLVISDWEMPEM 60 Query: 65 NGLKLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 NGL L +R R G +++++A E+ D+ + G +D L KPV+ + Sbjct: 61 NGLTLCREVRRRQFGHYVYLILLTAREDPGDLTQGFAAGADDFLSKPVEQSELRARLHAG 120 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 S+ RL + + AA++ Q + P Q ++ L +A Sbjct: 121 ARILSLEADLAARNTRLSEALRQIEQDLELAARIQQSVLPAHQLCYQGFFSDWIFLPSAW 180 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALL 218 G + ++ L E+ L FYC+DV+ GH GV AA++ Sbjct: 181 VSGDIFNVFPLGEH-LGFYCVDVS--GH-GVGAAMM 212 >UniRef50_C1F979 DNA-binding response regulator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F979_ACIC5 Length = 234 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 39/101 (38%), Positives = 59/101 (58%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 Q+L+V+D+ L+ + G T AADG ALELL PDL++ D+ +PR +G + Sbjct: 2 QVLLVDDDGALTRFLERGLAEEGYTVTSAADGEAALELLEAMLPDLVVLDLNLPRRDGTE 61 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 +L +R R + PVLV++ +A + L LG +D LLKP Sbjct: 62 VLAALRARHAEVPVLVLTGRSEVASRVRCLDLGADDCLLKP 102 >UniRef50_A1VGA9 Sensor protein n=3 Tax=Desulfovibrio vulgaris RepID=A1VGA9_DESVV Length = 489 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 40/116 (34%), Positives = 62/116 (53%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 IL VED++ R+ + +W G A D + ALE++ PDL++ D+ +P ++G Sbjct: 9 HILTVEDDESLRASVVAWLEDAGYVVSEAGDALKALEVIQRSPPDLILLDLGIPGISGED 68 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 LL + +R PV+V+S + D A RLG D L KP+ DL+ L + CL Sbjct: 69 LLAMLNDRHPDLPVVVVSGRAEIGDAIAAFRLGAWDYLTKPLPDLDMLGVTITNCL 124 >UniRef50_C4ZM81 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Thauera sp. MZ1T RepID=C4ZM81_THASP Length = 465 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 6/164 (3%) Query: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 +P+ + +LIV+DE+++R LL G A DG AL + G +L + DI MP Sbjct: 4 RPITDRHVLIVDDEELYRELLGGRLGRQGYRISEAGDGEGALRCIEGGGVELALIDIKMP 63 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 M+G++LLE I+ +T V+V++ ++ A++LG D L KP + L L +V Sbjct: 64 GMDGIELLERIKQLAPRTEVVVLTGHGSIDSAIAAMKLGAFDYLTKPYQ-LTELDLVVAR 122 Query: 123 CLYPSMFNSRVE----EEERL-FRDWDAMVDNPAAAAKLLQELQ 161 L S R + E RL RD D MV + A ++L++++ Sbjct: 123 ALERSALARRCDALSVEVARLRSRDDDGMVGDSPAWLRMLEQVR 166 >UniRef50_B1WUT4 Sensor protein n=2 Tax=Cyanothece RepID=B1WUT4_CYAA5 Length = 850 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 4/114 (3%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 ++ L G ++L V+D + R LL+ +S GA T + A G + L L F PD++ICDI+ Sbjct: 721 VSTDLRGIKVLAVDDSEDTRHLLEMLLTSYGAETSVVASGTEVLTHLKTFDPDVLICDIS 780 Query: 61 MPRMNGLKLLEHIR----NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 MP M+G LL+ IR +G P + ++A D KAL G ++ + KP+ Sbjct: 781 MPDMDGYTLLQEIRVLPDAQGGNIPAIALTAFTRHEDRQKALSKGFQEHIPKPI 834 >UniRef50_C6C248 Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C248_DESAD Length = 368 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 60/107 (56%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+++DE R + + + G + A DG + LE+ PD ++ D+ MP+++G ++ Sbjct: 8 ILVIDDEDFVRETISDYLTDSGFNIIDAGDGEEGLEIFRRENPDAVLVDLNMPKVDGFEV 67 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL 116 L + TP++V+S + D KA+RLG D + KP+ DLN L Sbjct: 68 LTQVSAESPDTPIIVVSGAGLIQDAIKAVRLGAWDFVTKPIVDLNIL 114 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 75.1 bits (183), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 42/112 (37%), Positives = 67/112 (59%), Gaps = 1/112 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILIV+DE R +L + F+ G T A +G AL L PD+++ DI MP M+G+K Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 L+ +R+ +TPV++++A + +ALR G D ++KP DL+ L +V Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPF-DLDELNLIV 116 >UniRef50_Q2LXY9 Response regulator receiver domain and a sigma factor phosphatase domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXY9_SYNAS Length = 402 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 120/246 (48%), Gaps = 30/246 (12%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 ++ILI++D R+LL + G A DG D L + + PDL++ DI MP ++G Sbjct: 3 EKILIIDDSPDIRALLARFLRKAGYDIAEAHDGEDGLRQVKAWKPDLILLDIVMPGIDGY 62 Query: 68 KLLEHIRNRGDQ----TPVLVISATENMADIAKALRLGVEDVLLKP---------VKDLN 114 ++ I +GD PV+ +SA AD K L +G D + KP +++ Sbjct: 63 QVCRSI--KGDSCSRDIPVIFLSARSEAADKIKGLAIGGADYITKPFDRGEVMARIENQF 120 Query: 115 RLREMVFACLYPSMFNSRV-EEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRV 173 ++R + + + + N+ + E+++RL D AAA + + L P I + Sbjct: 121 KIRHLTYELI---LANAELTEKQKRLDEDL-------QAAAGIQRSLLPQKIPQIEGLDI 170 Query: 174 NYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAH 233 ++ + + G + ++ L E+ + FY +D++ GH GV AAL+ ++ LQ + + Sbjct: 171 AWKFMPSEQIGGDIFNVLRLDEDHIGFYMIDIS--GH-GVPAALVTFSVSQA-LQPHMGY 226 Query: 234 QNQRLP 239 +++P Sbjct: 227 TIRKIP 232 >UniRef50_A0LBU1 Response regulator receiver modulated diguanylate cyclase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LBU1_MAGSM Length = 438 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 38/103 (36%), Positives = 59/103 (57%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +L VEDE R L S+ +A++G +ALE+ PDL+I DI MPRM+GL+ Sbjct: 15 HVLYVEDEATIREELSSYLKRRVTLLQVASNGEEALEMFKRSKPDLVITDIRMPRMDGLQ 74 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 L E IR P++V +A + KA+ +G+++ +LKP + Sbjct: 75 LAEAIRALDTDIPIMVTTAYNDERFFLKAISIGIDEFILKPTQ 117 >UniRef50_B1ZTF2 Two component transcriptional regulator, winged helix family n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZTF2_OPITP Length = 248 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 62/102 (60%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 ++ILIV+D+ + R+++ S G + AADG A+E + P L++ DI MPR+ GL Sbjct: 15 ERILIVDDDPMVRAVVGSCLVRQGYRVLEAADGEQAMERIVREKPALVVLDIEMPRVGGL 74 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 +L +R G+ TPVL++S+ ++ D L LG +D L KP Sbjct: 75 AVLSRLRESGNLTPVLIVSSRSHVDDRVNGLSLGADDYLTKP 116 >UniRef50_Q10XK2 Adenylate/guanylate cyclase n=4 Tax=Bacteria RepID=Q10XK2_TRIEI Length = 351 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 62/209 (29%), Positives = 97/209 (46%), Gaps = 20/209 (9%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+D Q R LL G A+DG ALE++ + DL++ DI MP+MNG ++ Sbjct: 8 VLVVDDNQFNRDLLARRVKRQGHMISSASDGFQALEMVRNHSFDLVLLDIMMPQMNGYQV 67 Query: 70 LEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL--- 124 LE ++ PV++ISA +++ I + + LG ED L KP + L+ + ACL Sbjct: 68 LETLKADPALRHIPVIMISAVDDIDSIVRCIELGAEDYLSKPFNPI-LLKARINACLEKK 126 Query: 125 --------YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYR 176 Y E+ E+L + PA A+ L++ + + S V + Sbjct: 127 RLRDQEQAYIKQLAEEQEKSEKLLLNI-----LPAPIAQRLKQGEKTIADSFSEVTVLFA 181 Query: 177 QLVAADKPGLVLDIAALSE-NDLAFYCLD 204 LV K L A L E ++ F C D Sbjct: 182 DLVGFTKVSANLSPAELVELLNMIFSCFD 210 >UniRef50_C1XV31 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Meiothermus RepID=C1XV31_9DEIN Length = 256 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 60/102 (58%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +++LIVEDE+V +L G +A DG AL+L PDL+I D+ +PR++GL Sbjct: 3 RRVLIVEDERVLAEVLADNLREEGLEVAVARDGESALQLWQSSQPDLVILDVMLPRLSGL 62 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 + +R GD+TPVL +SA + + LR+G +D + KP Sbjct: 63 DVCRRMRTAGDRTPVLFLSAKGQPEERVEGLRVGGDDYMGKP 104 >UniRef50_Q1Q5K2 Similar to two component response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q5K2_9BACT Length = 271 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 42/138 (30%), Positives = 78/138 (56%), Gaps = 3/138 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILIVED++ R++L+ + LG ++LA +G+ AL + PD+++ DI MP M+G + Sbjct: 6 RILIVEDKESNRNILNERINELGHISILAENGLSALAKVREQPPDIILLDIMMPEMDGYE 65 Query: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +L H++ PV++ISA +M I + + G +D L KP + L+ + +CL Sbjct: 66 VLCHLKGNASWRHIPVIMISAIGDMDSIVRCIEKGADDYLTKPFNPV-LLKARIDSCLMK 124 Query: 127 SMFNSRVEEEERLFRDWD 144 + + E+ + D++ Sbjct: 125 KRLHDQEEQYRKRLEDYN 142 >UniRef50_C6X6K2 CheA signal transduction histidine kinase n=1 Tax=Methylovorus sp. SIP3-4 RepID=C6X6K2_METSD Length = 1758 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 43/111 (38%), Positives = 63/111 (56%), Gaps = 2/111 (1%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 P +I++V+D R +L G V+A DG+DAL+LL PDL++ DI MPR Sbjct: 1634 PPRAPEIMVVDDSLTMRKVLSRLLEREGYRVVVAKDGMDALQLLQDSLPDLILSDIEMPR 1693 Query: 64 MNGLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD 112 M+G +L+ +IR +R P+L+IS+ + A LGV L KPV+D Sbjct: 1694 MDGFELVRNIRGDSRTANIPLLIISSRTAEKHRSLARELGVNAYLGKPVQD 1744 >UniRef50_A9BXU4 Two component transcriptional regulator, winged helix family n=45 Tax=cellular organisms RepID=A9BXU4_DELAS Length = 342 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 41/100 (41%), Positives = 60/100 (60%), Gaps = 1/100 (1%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+ EDE +L ++ + TV AADG ALEL PDL++ D+ MPR++G ++ Sbjct: 116 ILVAEDEPEIADILCAYLARSDLRTVHAADGQQALELHHHLKPDLVLLDVQMPRLDGWQV 175 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 L IR RGD TPV++++A D LR+G +D + KP Sbjct: 176 LSEIRRRGD-TPVIMLTALNQDVDKLIGLRIGADDYVGKP 214 >UniRef50_C6CWR9 Two component transcriptional regulator, AraC family n=2 Tax=Paenibacillus RepID=C6CWR9_PAESJ Length = 540 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 58/82 (70%), Gaps = 3/82 (3%) Query: 29 SLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISAT 88 ++G T A +GV+ALELL + DL++CDI MP M+GL+L+ HIR +G ++ ++++S Sbjct: 30 TVGGT---AKNGVEALELLESESFDLVLCDIRMPVMDGLELVRHIREKGTESDIIMLSGY 86 Query: 89 ENMADIAKALRLGVEDVLLKPV 110 ++ A A++ GV+D +LKP+ Sbjct: 87 QDFAYTRAAIQYGVKDYVLKPI 108 >UniRef50_B8DJD4 Response regulator receiver modulated metal dependent phosphohydrolase n=4 Tax=Desulfovibrio vulgaris RepID=B8DJD4_DESVM Length = 363 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 69/143 (48%), Gaps = 11/143 (7%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+++D+ R L + S G + A DG L+ PDL++ D+ MP ++GL + Sbjct: 7 ILVIDDDPQVRGSLADFLSDSGYGVLQAEDGRAGLDAWQAHQPDLVLVDLRMPVLDGLSV 66 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL----- 124 + I G TPV+V+S T + D ALR G D L KP++D+ L V CL Sbjct: 67 IRAITASGMGTPVVVVSGTGVLRDAVAALREGAWDYLTKPLEDMGALEHTVERCLERARL 126 Query: 125 ------YPSMFNSRVEEEERLFR 141 Y + +R+ E R R Sbjct: 127 LAENEAYRAGLEARIAERTRELR 149 >UniRef50_C4XSW8 Response regulator receiver protein n=2 Tax=Desulfovibrio RepID=C4XSW8_DESMR Length = 616 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 4/141 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+D ++ R +L F G + A +G ALEL PD+++ DI MP M+G + Sbjct: 291 KILVVDDSKLIREMLRHNFVKNGHCVLTAENGAKALELALAEQPDVVVTDIEMPEMDGYE 350 Query: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 L EHIR + + T V+++SA + +DI + RLGV +KP D+ ++ +V L Sbjct: 351 LCEHIRKQPELRNTLVVIMSARGHASDIKRGERLGVSRYFVKPF-DVEKM-HLVVEQLLG 408 Query: 127 SMFNSRVEEEERLFRDWDAMV 147 + +E E + A++ Sbjct: 409 ESYRHLKKEHEHVLSSMSALI 429 Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/109 (30%), Positives = 60/109 (55%), Gaps = 3/109 (2%) Query: 3 QPLVG-KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 QP+ G ++IL V+ + ++ + +S G V A + DAL L +L++ + + Sbjct: 158 QPVAGPREILFVDAGRTLLHVVRAALASSGFRVVSARNAEDALALCRRHAFELVLTSVLL 217 Query: 62 PRMNGLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLK 108 P M+GL+L ++ N G PV+++S+++N D+ A G +D LLK Sbjct: 218 PGMSGLELCRKLKEDNAGPYLPVIMLSSSDNALDMDTAFNYGADDYLLK 266 >UniRef50_B2I164 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=23 Tax=Acinetobacter RepID=B2I164_ACIBC Length = 247 Score = 74.3 bits (181), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 43/141 (30%), Positives = 81/141 (57%), Gaps = 2/141 (1%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K IL+VED+ +++++ G + + A +G A+EL DL++ DI +P +NG Sbjct: 13 KVILVVEDDYDIGDIIENYLKREGMSVIRAMNGKQAIELHASQPIDLILLDIKLPELNGW 72 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 ++L IR + QTPV++++A + D ALR+G +D ++KP + N + V A L + Sbjct: 73 EVLNKIRQKA-QTPVIMLTALDQDIDKVMALRIGADDFVVKPF-NPNEVIARVQAVLRRT 130 Query: 128 MFNSRVEEEERLFRDWDAMVD 148 F ++V + +L+++ + D Sbjct: 131 QFANKVTNKNKLYKNIEIDTD 151 >UniRef50_B1I6I2 Response regulator receiver protein n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I6I2_DESAP Length = 120 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 68/115 (59%), Gaps = 1/115 (0%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+D+ R LL S G V+A++G +A+ + P+L++ D+ MP + GL+ Sbjct: 2 LLVVDDQPAIRQLLSEALESEGHAVVVASNGYEAINITRQQKPELILLDLKMPGLGGLET 61 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 L I PV++I+A ++D+ +A RLGV +++KP DLN +R +V + L Sbjct: 62 LREIHKYSPDIPVILITAYGELSDLGEAERLGVRRLIIKPF-DLNEVRSLVRSVL 115 >UniRef50_B0K8A6 Response regulator receiver modulated diguanylate cyclase n=12 Tax=Clostridia RepID=B0K8A6_THEP3 Length = 318 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 40/119 (33%), Positives = 67/119 (56%), Gaps = 6/119 (5%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 G+ ILIV+D ++ R +L + G + A DG +AL++ PD++I DI MP MNG Sbjct: 11 GRNILIVDDNKLTRKILKDILENAGYGVLEAKDGEEALQIYRNKLPDMVILDIVMPGMNG 70 Query: 67 LKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 LL +R + P++++++ +N + K L LG +D L+KP D +E++F Sbjct: 71 FDLLRILRKEEENLMLPIILLTSQDNFEEKIKGLELGADDYLVKPFND----KELLFKV 125 >UniRef50_B8FKA0 Sensor protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKA0_DESAA Length = 832 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 62/107 (57%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL ++DE+ R ++ G + A +G LE+ P L++ D+ MP ++GL++ Sbjct: 12 ILTIDDEEAIRQSFAAFLEDFGYEVLSAPNGKVGLEIFKEKKPHLILVDLRMPEVDGLEV 71 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL 116 L + +TP++V+S T +AD +AL LG D +LKP+K+L+ L Sbjct: 72 LSSVTQASPETPIIVVSGTGVIADAVEALHLGAWDYILKPIKNLSIL 118 >UniRef50_Q07SD0 Response regulator receiver modulated serine phosphatase n=3 Tax=Bradyrhizobiaceae RepID=Q07SD0_RHOP5 Length = 441 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 94/324 (29%), Positives = 144/324 (44%), Gaps = 47/324 (14%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADG-VDALELLGGFTPDLMICDIAMPRMNG 66 +IL+V+D+ + LL + V AA+G + ALE++ F PDLM+ D+ MP ++G Sbjct: 26 SRILVVDDDPMACRLLATILKKHQFANVRAAEGGISALEMIDSFRPDLMLLDMQMPDLSG 85 Query: 67 LKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 L++ E +R R D P+LV +AT + ++ G D L KP+ Sbjct: 86 LEVCERVRARPDLVDMPILVQTATVDRKEMGMLFMAGASDFLSKPIN------------- 132 Query: 125 YPSMFNSRVE---EEERLFRDWDAMVDNPA----AAAKLLQELQP-PVQQ----VISHCR 172 P+ SRV E L R+ D + AA ++ EL P P QQ + R Sbjct: 133 -PAELMSRVAVHLERRTLLRELRDYRDRTSQELDAAQRMQAELLPTPCQQQQLAEDAGLR 191 Query: 173 VNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLA 232 + +++ G + + L+++ + D T GH GV AAL N L Sbjct: 192 IGSFAQPSSEIGGDLWGMLPLNQDSFGIFVADFT--GH-GVTAAL------NTFRLHALI 242 Query: 233 HQNQRLP-ELGALLKQVNHLLRQANLPGQFP--LLVGYYHRELKNLILVSAGLNATLNT- 288 H+ + L + AL+ +N L + PGQF L + HR L VSAG + + Sbjct: 243 HEYRSLHNDPTALVSMLNERLCRLLTPGQFATFLYLIVDHRA-DRLRFVSAGAPPPIVSE 301 Query: 289 ---GEHQVQISNGVPLGTL-GNAY 308 G + + GVPLG G AY Sbjct: 302 GLRGPSTIIEAAGVPLGVARGVAY 325 >UniRef50_B8FGV0 PAS modulated sigma54 specific transcriptional regulator, Fis family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FGV0_DESAA Length = 765 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 75/140 (53%), Gaps = 5/140 (3%) Query: 4 PLVGK-QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 P G+ +LI++D++ L +F LG A +G+ L++L PD ++ D+AMP Sbjct: 3 PYSGQMSVLIIDDDEAICKALGHYFEDLGFIAYQADEGLGGLDVLLECRPDAVLVDLAMP 62 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 M GL+ L R +TP++V+S T ++ D +A RLG D + KP+ D+ + V Sbjct: 63 GMGGLEFLARAREIAPETPMIVVSGTGHLEDAVEASRLGAVDYITKPILDMAVVENSVKR 122 Query: 123 CLYPSMFNSRVEEEERLFRD 142 L +SR++ E R + + Sbjct: 123 ALE----HSRLKRENRDYSE 138 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 64/102 (62%), Gaps = 1/102 (0%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +++LIV+DE R +L++ S +G V A+DG +AL L PD++I DI MP+++G Sbjct: 15 EKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGY 74 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 + + IR D P+++++A ++AD L LG +D ++KP Sbjct: 75 GVCQEIRKDSD-VPIIMLTALGDVADRITGLELGADDYVVKP 115 >UniRef50_A9WEK6 Sensor protein n=3 Tax=Chloroflexus RepID=A9WEK6_CHLAA Length = 666 Score = 73.9 bits (180), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 39/103 (37%), Positives = 59/103 (57%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +L+V+D+ R L + G AAD ALE L DL++ D+ MP MNGL+ Sbjct: 7 HVLVVDDDPQLRDLCRQTLARAGFVVTTAADVTTALEALEQTVFDLVMVDLIMPGMNGLQ 66 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 LLE IR+R P+L++S ++ I+ A+RLG +L+KP + Sbjct: 67 LLELIRSRDISVPILIVSGAASIEQISYAMRLGARGLLIKPFR 109 >UniRef50_C6D3A0 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D3A0_PAESJ Length = 520 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 46/133 (34%), Positives = 78/133 (58%), Gaps = 10/133 (7%) Query: 9 QILIVEDEQVFR----SLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 ++LIV+DE++ R S+++ F A +G +ALELLG D++I DI MP M Sbjct: 3 RLLIVDDEKIIRRGLQSVIERQFPD-RFNYRFAENGQEALELLGQEPADILITDIRMPIM 61 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +G++LLE +++ + V+++S + A K +R V+D L+KPV +RE +FA + Sbjct: 62 DGIELLEQLQDHQVKPEVVLLSGYNDFAYAQKGIRYAVKDYLVKPV-----VREELFAVM 116 Query: 125 YPSMFNSRVEEEE 137 + + RV EE+ Sbjct: 117 ERLILDIRVREEQ 129 >UniRef50_A9U772 Predicted protein (Fragment) n=2 Tax=cellular organisms RepID=A9U772_PHYPA Length = 475 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 1/100 (1%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+ EDE +L ++ + TV AADG ALEL PDL++ D+ MPR++G ++ Sbjct: 372 ILVAEDEPEIADILCAYLARSDLRTVHAADGQQALELHHHLKPDLVLLDVQMPRLDGWQV 431 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 L IR RGD TPV++++A D LR+G D + KP Sbjct: 432 LSEIRRRGD-TPVIMLTALNQDVDKLIGLRIGENDYVGKP 470 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 58/102 (56%), Gaps = 1/102 (0%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 + I+IV+DEQ R + D + S G T+LA DG AL L+ PDL++ DI MP M+GL Sbjct: 2 QTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDGL 61 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 ++ IR++ PV+ +S + D LG +D + KP Sbjct: 62 EVCREIRSQL-SIPVIFLSVRRSTMDKVACFELGADDYMTKP 102 >UniRef50_Q3JS34 Sensor protein n=26 Tax=Burkholderia RepID=Q3JS34_BURP1 Length = 1082 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/117 (39%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 G +LI ED + RSLL ++LG + A +G +AL LL D+++ DI MP M+G Sbjct: 852 GMTVLIAEDNLLNRSLLLDQLTTLGVRVIEAKNGEEALALLLKEPVDVVMTDIDMPMMDG 911 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 +LL +R G PV +SA+ D+A+ G D L KPV L RL +V AC Sbjct: 912 FQLLAEMRRLGMTMPVYAVSASARPEDVAEGRARGFTDYLAKPVS-LERLETVVRAC 967 >UniRef50_A3Y6D4 Putative two-component response regulator n=1 Tax=Marinomonas sp. MED121 RepID=A3Y6D4_9GAMM Length = 333 Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/113 (38%), Positives = 65/113 (57%), Gaps = 4/113 (3%) Query: 1 MTQPLVGKQ-ILIVEDEQVFRSLLDSWFSSLGATTVLAA-DGVDALELLGGFTPDLMICD 58 M+QP K IL+V+DE++ R LL S G +L A +GV+A++L + PDL+I D Sbjct: 7 MSQPFQKKHLILLVDDEEINRILLTSIIEDRGDCEILCAKNGVEAIDLCLKYQPDLIILD 66 Query: 59 IAMPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKP 109 I MP M G +++E ++ +Q PV+ ISA A A +LG D + KP Sbjct: 67 ILMPAMTGFEVMEVLKQEAPTNQIPVIFISALSETNHEAHAFQLGACDYIHKP 119 >UniRef50_B5JB24 Stage II sporulation protein E n=3 Tax=Rhodobacteraceae RepID=B5JB24_9RHOB Length = 401 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 85/336 (25%), Positives = 146/336 (43%), Gaps = 41/336 (12%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 +T PL +I++ ED+++ + L + LG V A DGV ALELL ++I D+ Sbjct: 2 LTLPL---KIIVAEDDELQQFYLCGLINGLGYEAVPAQDGVSALELLTQTDAQIVISDLQ 58 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRL--GVEDVLLK---------- 108 MP ++G+ L IR + + +I T D + L GV+D + K Sbjct: 59 MPNLDGIGLTHKIRGLDLEHYIHIIMVTGAEDDDVRTASLLAGVDDFITKGSGPAMLKAR 118 Query: 109 ---PVKDLNRLREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQ 165 + +N E+ ++N+R++E+ R AAA ++L P ++ Sbjct: 119 IRTATRLINHATELAERTRILEVYNARIQEDLR-------------AAATAQRQLLPDLK 165 Query: 166 QVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNG 225 + I RV + ++ G + AL ++ L FY +DV+ GH GV AALL A+ + Sbjct: 166 KDIMGFRVASAFVPSSIVSGDMFGCFALCDDKLGFYAVDVS--GH-GVHAALLSVAIGHL 222 Query: 226 LLQEQL---AHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGL 282 + A + P+L A++ +N + F + G + L AG Sbjct: 223 VTPAYFITKAFDSSGTPDLAAMVAGLNTRFGASENDDYFTMFCGVVDKISGRLDYCQAGY 282 Query: 283 ---NATLNTGEHQVQISNGVPLGTL-GNAYLNQLSQ 314 + +G + G P+G + G AY N++ Q Sbjct: 283 PSPSYVDQSGTAEAIGDGGFPVGMISGVAYENKVHQ 318 >UniRef50_C6BT74 Signal transduction histidine kinase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BT74_DESAD Length = 372 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 78/340 (22%), Positives = 155/340 (45%), Gaps = 49/340 (14%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL ++D++ R + + G + A++G + L++ PD+++ D+ MP M+GL Sbjct: 6 KILTIDDDESVRLSIAHYLEDSGYEVLQASNGHEGLKIFHEQKPDVVLLDLRMPEMDGLS 65 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 +L+ + QTPV+V+S T + D+ +RLG D + KP+ DL L + Sbjct: 66 VLKQLGQEAPQTPVIVVSGTGSFEDVIATVRLGSWDYIPKPITDLTDLENAIL------- 118 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP-GLV 187 R E RL +V+N +L +++ +++ +V ++ A K GLV Sbjct: 119 ---RTRERARL------LVENERYKEELECKIRERTEELQLMNKVLSEEITARKKSEGLV 169 Query: 188 LDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQ 247 A+L+E ++ + + V+++LL +L +G ++ E LL++ Sbjct: 170 R--ASLAEKEVMLKEIHHRVKNNLQVISSLL--SLQSGYTDDK---------EASNLLRE 216 Query: 248 VNHLLRQANLPGQ--------FPLLVGYYHRELKNLIL----VSAGLNATLNTGEHQVQI 295 H +R ++ + + + Y L N +L V +N T N + + I Sbjct: 217 CQHRVRSMSMLHEKLYRSEDLSRIDMNEYALTLINFLLRSYSVDGKVNPTYNINDIHMGI 276 Query: 296 SNGVPLGTLGNAYL-NQLSQRCDAWQCQIWGTGGRLRLML 334 + +P G + N + N L+ A++ +GG L++ + Sbjct: 277 DSAIPCGLIINELVSNALTH---AYE---MNSGGELKVSM 310 >UniRef50_C6L8Z1 Putative response regulator receiver domain protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6L8Z1_9FIRM Length = 539 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 4/108 (3%) Query: 9 QILIVEDEQVFRSLL---DSWFSSLGATTVL-AADGVDALELLGGFTPDLMICDIAMPRM 64 ++L+VEDE R L + + G +L A++G + L P+L+I DI MP M Sbjct: 13 KLLVVEDELYAREALVRKIRQYDTAGDFQILEASNGKEGFGLYRQEQPELVITDIRMPGM 72 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD 112 +GL+LLE+IR G +T V+++SA A KA++ GV D LLKPV D Sbjct: 73 DGLELLENIRQLGQKTQVVILSAYSEFAYAQKAIQYGVSDYLLKPVSD 120 >UniRef50_C2H9Y3 Possible response regulator n=2 Tax=Enterococcus faecium RepID=C2H9Y3_ENTFC Length = 147 Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 64/108 (59%), Gaps = 1/108 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILIVED+ + L S G + + A +G DAL+ L +L+I DI MP+M+G Sbjct: 20 RILIVEDDPQLQLLYRSVLERAGFSVITALNGEDALKKLEATRIELIITDIMMPKMDGYD 79 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL 116 LL+ +R+ TPVL+I+A + D + +LG +D + KP+ D+N + Sbjct: 80 LLDSLRSTRFDTPVLMITAKADFEDKKRGFKLGADDYMTKPI-DVNEM 126 >UniRef50_Q1NPP0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPP0_9DELT Length = 403 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 88/333 (26%), Positives = 139/333 (41%), Gaps = 51/333 (15%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+DE+V R +L G ADG AL+ L G DL++ D+ MP ++GL Sbjct: 7 RILVVDDEEVNRDILVRRLIRRGYQVEAVADGQQALDWLAGQPCDLVLLDVMMPVLDGLS 66 Query: 69 LLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 L +R T PV++ +A ++ D+ AL G D + KP+ +P Sbjct: 67 ALRRLRRDFSPTALPVIMTTARDDSEDVVTALEAGASDYVTKPID-------------FP 113 Query: 127 SMFNSRVEEEERLFRDWDAM------VDNPAAAAKLLQELQPPVQQ-VISHCRVNYRQLV 179 + +R++ + RL R + + + AA L+Q Q P R R Sbjct: 114 -VLQARMDTQLRLKRTTEELTAAYQRIKTEIEAAALVQRAQIPAGPLTFEGWRCACRYQP 172 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLL------------RALFNGLL 227 A+ G +L+ L + LA Y LDV+ GH G AALL R G Sbjct: 173 CAELGGDILNYFPLDDELLALYLLDVS--GH-GAGAALLSSGVGRLLSASGDRITLTGAS 229 Query: 228 QEQLAHQNQRLPEL---------GALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLI-L 277 Q+ A Q + P G +L ++N + QF ++ + L+ Sbjct: 230 QDIFADQQAQPPRRRNSDRPASPGEILARLNRRFPIESTTSQFFTIIYVIIDCRQGLVRY 289 Query: 278 VSAGLNATL---NTGEHQVQISNGVPLGTLGNA 307 SAG L +G+ + G+P+G + NA Sbjct: 290 ASAGHPGPLVMEPSGQVRYASGTGLPVGIMENA 322 >UniRef50_Q46XZ9 Response regulator receiver n=7 Tax=Proteobacteria RepID=Q46XZ9_RALEJ Length = 160 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 67/123 (54%), Gaps = 3/123 (2%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 P +++L+++D R + + S G VLA DG +AL +G PDL+ CDI MPR Sbjct: 28 PASSRRVLVIDDSSTIRRTAEIFLSQAGYQVVLAEDGFEALAKVGDMHPDLIFCDILMPR 87 Query: 64 MNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVF 121 ++G + I+ R PV+++S+ + + D ++ +G +D L KP + L + V Sbjct: 88 LDGYQTCSLIKKSPRFHAIPVIMLSSRDGVFDRSRGRLVGAQDHLAKPFT-RDALLQAVQ 146 Query: 122 ACL 124 ACL Sbjct: 147 ACL 149 >UniRef50_B2J7C2 Sensor protein n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7C2_NOSP7 Length = 709 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/110 (38%), Positives = 61/110 (55%), Gaps = 4/110 (3%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L G ++L VEDEQ R LL GA AA G +AL++L PD++ICDIAMP M Sbjct: 587 LRGVRVLTVEDEQDTRELLVFMIEQYGAEVTAAASGREALKILKQSQPDILICDIAMPEM 646 Query: 65 NGLKLLEHIRN----RGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 +G L+ +R+ +G Q + ++A +D +AL G + L KP+ Sbjct: 647 DGYMLIRQVRSWPKGQGGQIKAIALTAYAGESDQKQALAAGFQRHLSKPI 696 >UniRef50_A7I8C1 Sensor protein n=1 Tax=Candidatus Methanoregula boonei 6A8 RepID=A7I8C1_METB6 Length = 579 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 5/123 (4%) Query: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 +P+ K+ILIVED V +L + G T +A +G ALE+L PDL+I DI MP Sbjct: 6 KPVPAKEILIVEDSHVQAEILKHILDNAGYTCQVAENGERALEVLARKIPDLIISDIIMP 65 Query: 63 RMNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD---LNRLR 117 MNG L I+ R P+++++A + DIA A+ G ++ + KP L R+R Sbjct: 66 VMNGYDLCREIKKNVRTKNIPLILLTALSDSRDIALAIESGADNFITKPYPADYLLQRIR 125 Query: 118 EMV 120 +++ Sbjct: 126 KIL 128 >UniRef50_C4XLI9 Two-component hybrid sensor and regulator n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XLI9_DESMR Length = 363 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 61/104 (58%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL ++D ++ R + ++ + G + AADG + LE+ PDL++ D+ MP + G+++ Sbjct: 9 ILTMDDAEILREAMAAYLENHGYRVLQAADGREGLEIFEAARPDLVLIDLRMPVLGGMEV 68 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDL 113 L +R TP +V+S T + D +A+RLG D + KP+ D+ Sbjct: 69 LARLREMAPDTPTIVVSGTGLLQDALEAIRLGAWDFITKPMADM 112 >UniRef50_C6LFN3 DNA-binding response regulator ResD n=21 Tax=Bacteria RepID=C6LFN3_9FIRM Length = 251 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 60/101 (59%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+VED R L + + G ++ AADG +AL+++ DL++ DI MP M+G +L Sbjct: 30 ILVVEDNADMRELFCTVLADHGYNSIPAADGAEALDIMDRQYIDLIVADIMMPNMDGYQL 89 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 + +R+ PVL+++A + D+ + R G +D ++KPV Sbjct: 90 TKALRDANYTLPVLMVTAKDQFIDLQQGFRTGADDYMIKPV 130 >UniRef50_A8S3H1 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3H1_9CLOT Length = 409 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 65/114 (57%), Gaps = 5/114 (4%) Query: 9 QILIVEDEQVFRSLLDS----WFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 ++++ +DEQ R+ L+ + L A DG+D +E L P +++ DI MPRM Sbjct: 3 RVILADDEQYERNYLEKVIKESYPGLLEIVYKAVDGMDLMEKLEECKPQIVLLDIKMPRM 62 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 NGLK E +R R +++ISA + + +A++LGV D LLKP D + LRE Sbjct: 63 NGLKTAEEVRKRHPDIQIVLISAYSDFSFAKQAIKLGVTDYLLKPYLD-SELRE 115 >UniRef50_B8HVV8 Response regulator receiver protein n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HVV8_CYAP4 Length = 406 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 51/156 (32%), Positives = 83/156 (53%), Gaps = 8/156 (5%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 ++ L GK IL+V+D + R LL G T L+ +G AL+LL + DL++ D+ M Sbjct: 169 SEDLTGK-ILVVDDTLINRDLLSRRLERQGHTVKLSENGQQALQLLESQSFDLVLLDVIM 227 Query: 62 PRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 P+MNGL+LL +++ + PV++ISA + + + + LG ED L KP + L+ Sbjct: 228 PKMNGLELLRLMKDTPNWKDIPVIMISALDEVESAVRCIELGAEDYLTKPFNTI-LLKAR 286 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAK 155 + ACL ++ER + A + AAA + Sbjct: 287 IKACLEKKYLR----DQERQYLHQVACLTEAAAAVE 318 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/102 (40%), Positives = 58/102 (56%), Gaps = 1/102 (0%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K ILI++DE R LL + + G T A +GVDAL + DL+I DI MP M+G Sbjct: 12 KTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDGY 71 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 +LL+ IR+ + P L +SA + D L+LG +D + KP Sbjct: 72 ELLKKIRHIS-EVPFLFLSAKSDDMDKIIGLQLGADDYVGKP 112 >UniRef50_C4Z758 Two-component system, OmpR family, response regulator n=49 Tax=Bacteria RepID=C4Z758_EUBE2 Length = 236 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 40/102 (39%), Positives = 58/102 (56%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 QILIVED++ L G A+DG ALE+L DL+I DI MP M+G + Sbjct: 16 QILIVEDDKELSQLFQKVLEKNGYQVKSASDGAQALEVLDKEYIDLIISDIMMPVMDGYE 75 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 L+ +R+ G Q PVL+I+A + D+ + G +D ++KPV Sbjct: 76 LVSELRSAGYQIPVLMITAKGSFDDMRQGFLSGSDDYMVKPV 117 >UniRef50_C3X1J5 Response regulator receiver:Transcriptional regulatory protein n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X1J5_OXAFO Length = 223 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 42/101 (41%), Positives = 60/101 (59%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILI+ED Q R L + + G T DG+ AL LL + DL+I DI +P M+GL Sbjct: 3 KILIIEDNQDIRYNLVDFLEAKGHKTDNTDDGLKALALLTLQSFDLIILDIMLPGMDGLD 62 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 L +R RG++TPVL +SA + + D + L G +D L+KP Sbjct: 63 LCRELRARGNETPVLFLSARDTVQDRIQGLSTGADDYLVKP 103 >UniRef50_C0D0A3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D0A3_9CLOT Length = 487 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 60/106 (56%), Gaps = 4/106 (3%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAA---DGVDALELLGGFTPDLMICDIAMPRMN 65 ++ I EDEQ R L+ G + LA DGV +EL +PD+ DI MPR++ Sbjct: 4 RVCIAEDEQFIRKGLEKRLEQCGQSFELAGSADDGVQGVELYRALSPDIFFVDINMPRLS 63 Query: 66 GLKLLEHIRNRG-DQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 GL+++E + G +T ++IS ++ A + +++RLGV L KPV Sbjct: 64 GLEMIEEAKKLGATRTKFVIISGYDDFAYLQRSIRLGVASYLKKPV 109 >UniRef50_B4AUG4 Sensor protein n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4AUG4_9CHRO Length = 1566 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 5/112 (4%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L G IL+V+D+ R L GA V A +AL++L G PD+++CDI MP + Sbjct: 1442 LSGMDILVVDDDADTRDFLGFLLREAGAKVVTLASATEALQVLAGSKPDVLLCDIGMPEI 1501 Query: 65 NGLKLLEHIR---NRGDQTPVLVISATENMADI--AKALRLGVEDVLLKPVK 111 +G L++ +R N+ + P+L I+ T D+ KAL+ G + + KP+K Sbjct: 1502 DGYMLIKQVRIWENQSGEKPILAIALTAYAGDLNHEKALKAGFQHHISKPIK 1553 Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 3/103 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+ +D R + + L ++ DG+ LE L PDL++ D+ MP ++G + Sbjct: 397 RILLADDNADMRDYIKRLLTDLYEVETVS-DGIAVLEALARELPDLVLTDVMMPGLDGFE 455 Query: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKP 109 LL +R + Q P++++SA + L+ G +D L+KP Sbjct: 456 LLRELRANPNTRQIPIILLSARAGEPSRVEGLKAGADDYLIKP 498 >UniRef50_Q1D3Y7 Sensor protein n=2 Tax=Cystobacterineae RepID=Q1D3Y7_MYXXD Length = 517 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 48/157 (30%), Positives = 82/157 (52%), Gaps = 2/157 (1%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 P ++L+V+DE + R + + AA G +AL+LL DL++ D +P Sbjct: 265 PTQKHRVLVVDDEIIIRMVFRDLMGK-ECEIIEAASGEEALDLLQQAPVDLIVTDKNLPG 323 Query: 64 MNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 M+GL+L + R R + V++++ ++ +AL LGV D LLKP D+ +R ++ + Sbjct: 324 MSGLELAQQARRRHTDSRVILMTGYPSLVTTQQALELGVVDYLLKPFDDIREVRALLRST 383 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQEL 160 L + +E + R D + DNPAAAA++ L Sbjct: 384 LARKPAPAPLETNPAM-RRVDVLEDNPAAAAQITHAL 419 >UniRef50_A5ZT85 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT85_9FIRM Length = 405 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 36/105 (34%), Positives = 60/105 (57%), Gaps = 3/105 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAAD---GVDALELLGGFTPDLMICDIAMPRMN 65 ++LI +DE R L S + + A+ G++ALE + F PD ++ DI MP+++ Sbjct: 3 KVLIADDEPKIRQGLKSVLEEMKLPITVCAEARNGMEALEKIEQFQPDFILMDICMPKLS 62 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 G++ LE +R PV+VIS + +A++LGV + LLKP+ Sbjct: 63 GIQFLEELRKLDKNCPVIVISGFNEFSYAKQAIKLGVSEYLLKPI 107 >UniRef50_D0LLH3 Two component transcriptional regulator, winged helix family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LLH3_HALO1 Length = 226 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 61/101 (60%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILIVED++ + L G T + DG++AL+ L +P L++ DI +P NG+ Sbjct: 5 KILIVEDDEAIAAGLALNLKIAGYQTTVVHDGLEALKRLEESSPHLILLDINLPSENGIG 64 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 +L +R G+Q PV+++SA ++ D ALRLG +D + KP Sbjct: 65 VLGTLRQSGNQVPVIILSARDDEYDKVAALRLGADDYITKP 105 >UniRef50_A9AW15 Adenylate/guanylate cyclase n=2 Tax=Bacteria RepID=A9AW15_HERA2 Length = 355 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 48/163 (29%), Positives = 87/163 (53%), Gaps = 13/163 (7%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 TQP +IL+V+D + R LL VLA +G AL+ + T DL++ DI M Sbjct: 4 TQP----RILVVDDSEDNRYLLQRQLLRRNYGVVLAENGQQALDYVQSHTIDLILLDIMM 59 Query: 62 PRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 P MNG ++L++++ PV+++SA ++M ++ K +++G ED L KP + Sbjct: 60 PVMNGFEVLQNLKQNEQLRHIPVIIVSAADDMENVVKGIQMGAEDYLAKPFNT-----TL 114 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQP 162 + A + S+ R+ ++E+ + A+ A + +LL+ + P Sbjct: 115 LRARIEASLEKKRLHDQEQAY--LQAIALEQAQSNRLLRNILP 155 >UniRef50_A6QD34 Two-component response regulator n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QD34_SULNB Length = 228 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 38/107 (35%), Positives = 64/107 (59%), Gaps = 8/107 (7%) Query: 10 ILIVEDEQVFRS----LLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 IL ED+QV R +L+ +F + T DG +AL L PD+++ DI MP ++ Sbjct: 6 ILYAEDDQVTRENYALVLEQYFRKVYTT----KDGKEALVLYYKEKPDVLLLDINMPYID 61 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD 112 GL++++ IR +TPV++++A + + KA+ LG+ L+KP+KD Sbjct: 62 GLEMVKTIREEDSETPVMILTAHSDKEKLLKAIPLGLTKYLVKPIKD 108 >UniRef50_D0IVE7 Two component transcriptional regulator, winged n=4 Tax=Comamonadaceae RepID=D0IVE7_COMTE Length = 249 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 63/109 (57%), Gaps = 1/109 (0%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 TQP +L+VEDE +L ++ G +A DG +AL+ PDL++ DI Sbjct: 13 FTQPASTPMVLVVEDEPGIAGVLSAYLERDGLRIRMAQDGEEALQSFRQLRPDLVLLDIH 72 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 +P+++G+ +L IRN D PV++++A + D ALRLG +D ++KP Sbjct: 73 LPKVDGVDVLRMIRNDSD-VPVIMVTALADDVDKLLALRLGADDYVVKP 120 >UniRef50_A3JMM3 Sensor protein n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JMM3_9RHOB Length = 784 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 41/138 (29%), Positives = 72/138 (52%), Gaps = 5/138 (3%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + GK++LI ED + R LL F + + A DG +A++ F PD+++ D++MP Sbjct: 645 IAGKRVLITEDNRTNRLLLRKMFERISVSLSFANDGNEAIDQFKSFRPDIVLMDVSMPIK 704 Query: 65 NGLKLLEHIRN----RG-DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 NGL+ + IR +G +TP+L ++A D K + G+ L KP+K +REM Sbjct: 705 NGLEAAKEIRTFEHAKGWPETPILALTANAFAEDQNKCINAGMNSFLSKPIKQDILIREM 764 Query: 120 VFACLYPSMFNSRVEEEE 137 A + + ++ ++ Sbjct: 765 GIAIAVKNSTTTEIQNQK 782 >UniRef50_Q4K4F2 Sensor histidine kinase/response regulator ChpA, putative n=4 Tax=Bacteria RepID=Q4K4F2_PSEF5 Length = 1969 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 39/113 (34%), Positives = 60/113 (53%), Gaps = 2/113 (1%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 QP +L+V+D R + G + A DGVDA+ LL TPDLM+ DI M Sbjct: 1842 VQPPRPMLVLVVDDSVTVRKVTSRLLERHGMNVLTAKDGVDAMALLAEHTPDLMLLDIEM 1901 Query: 62 PRMNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD 112 PRM+G ++ +RN R P+++I++ +A+ +GV D L KP ++ Sbjct: 1902 PRMDGFEVAIQVRNDPRLQHLPIIMITSRTGQKHRDRAMAIGVNDYLGKPYQE 1954 >UniRef50_D1B3C5 Response regulator receiver n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B3C5_SULD5 Length = 225 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 56/101 (55%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL++EDE + RS ++ + LG + +G +A + DL+I DI +P+MNGL Sbjct: 2 KILLLEDESMLRSSIEEYLEGLGHKVIAFGNGEEAYSAIAEGVFDLLILDINIPKMNGLA 61 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 LL+ + P + ISA + DI++A LG D L KP Sbjct: 62 LLKALNEAEKAYPTIFISANVEIDDISRAFELGASDYLKKP 102 >UniRef50_C4T682 Acetoacetate metabolism regulatory protein atoC n=2 Tax=Proteobacteria RepID=C4T682_YERIN Length = 287 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 7/155 (4%) Query: 22 LLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTP 81 +L + FS G + AADG ALEL PD+++ DI MP+++GL+ L+ +R +TP Sbjct: 1 MLTTVFSLDGHQPIGAADGQQALELFKQQAPDIVLMDIRMPKVSGLEALQVMRQTRQETP 60 Query: 82 VLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMFNSRVEEEERLFR 141 V++++A + +ALRLG D ++KP DL+ L+ ++ + + R Sbjct: 61 VILMTAYAAVETAVEALRLGAFDYVIKPF-DLDELKIIISRAMQLQEMKQEINRLHRALS 119 Query: 142 D---WDAMVDNPAAAAKLLQELQPPVQQVISHCRV 173 D W ++ N +AK+++ + + +SH V Sbjct: 120 DSYQWGRLLTN---SAKMMELCRDTAKIAMSHASV 151 >UniRef50_A6T295 Two-component hybrid sensor and regulator n=1 Tax=Janthinobacterium sp. Marseille RepID=A6T295_JANMA Length = 1901 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +++V+D R + + G VLA DGVDAL+ L TPD+M+ DI MPRM+G L Sbjct: 1779 VMVVDDSLTVRRVTQRLLTREGYQVVLAKDGVDALQHLQSVTPDVMLVDIEMPRMDGFDL 1838 Query: 70 LEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD 112 +IR+ R P+++I++ A+ LGV + L KP ++ Sbjct: 1839 TRNIRDDERTRDIPIIMITSRTASKHRNYAMELGVNEYLGKPYQE 1883 >UniRef50_A6BJV8 Putative uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A6BJV8_9FIRM Length = 508 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 42/123 (34%), Positives = 70/123 (56%), Gaps = 9/123 (7%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVL---AADGVDALELLGGFTPDLMICDIAMPRMN 65 +I ++EDE+ R L + + + A +G + L LL PDL++ DI MP M+ Sbjct: 2 KIAVIEDEKPIREGLVHILNKISPEYQVVGSAKNGAEGLILLEEEMPDLIMLDIQMPDMD 61 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV------KDLNRLREM 119 GL++L+ R RG T V++++A + + KA+ LG+E+ LLKPV K L +++E Sbjct: 62 GLQMLKEARARGIYTKVIILTAYSDFSYAKKAIELGIENYLLKPVNLTELKKTLEKIKEE 121 Query: 120 VFA 122 +F Sbjct: 122 LFV 124 >UniRef50_Q1LIY7 Two component transcriptional regulator, winged helix family n=3 Tax=Burkholderiales RepID=Q1LIY7_RALME Length = 221 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 44/115 (38%), Positives = 61/115 (53%), Gaps = 3/115 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++LIVED Q L S G AADGV AL+ L + D +I D+ +PR++G Sbjct: 2 RVLIVEDSQTLAEALSQSLQSEGYACDTAADGVSALKFLASYRYDAIILDLMLPRLDGFG 61 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP---VKDLNRLREMV 120 +L + PVLV+SA E + D +AL G +D L KP + L RLR +V Sbjct: 62 VLRALGREAHAAPVLVLSARELLDDRVRALDAGADDYLTKPFELAELLARLRALV 116 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 61/102 (59%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +++LIV+DE R +L + G AADG++ALE L D+++ D+ MP+++GL Sbjct: 2 EKVLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKEQIDVVVTDLKMPKLSGL 61 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 LLEH+ + +TPV++I+A + AL+ G D + KP Sbjct: 62 GLLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKP 103 >UniRef50_C8NDP1 DNA-binding response regulator n=2 Tax=Firmicutes RepID=C8NDP1_9LACT Length = 220 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 1/100 (1%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +LIVEDE+ R + + S G T A DGV+ALE+ + DL++ DI MPR NG ++ Sbjct: 5 LLIVEDEEAIREGVREFLSEQGFTVFEACDGVEALEVFNRESVDLILLDIMMPRKNGFEV 64 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 LE +R + + P+L+++A ++ K+ L V+ + KP Sbjct: 65 LEEVRQKSN-VPILMLTALQDEETQVKSFELLVDGYIQKP 103 >UniRef50_B0TI80 Response regulator receiver domain protein, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TI80_HELMI Length = 128 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/103 (38%), Positives = 62/103 (60%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 + +L+V+D++ R LL F +G +AA G +ALE LG LM+ D+ MP M G Sbjct: 4 SRWVLVVDDQKGVRRLLYEAFHLVGVPVEVAASGAEALEKLGRREYSLMLLDVRMPAMTG 63 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 L+ L R RG + PV+++SA E+++ I +A L + D L+KP Sbjct: 64 LEALAEARRRGHRLPVILMSAYEDLSLIKEAGALDILDHLIKP 106 >UniRef50_A4G8M3 Putative chemotaxis protein histidine kinase n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G8M3_HERAR Length = 1969 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 38/105 (36%), Positives = 59/105 (56%), Gaps = 2/105 (1%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +++V+D R + + G VLA DGVDAL+ L TPD+M+ DI MPRM+G L Sbjct: 1847 VMVVDDSLTVRRVTQRLLTREGYQVVLAKDGVDALQHLQSVTPDVMLVDIEMPRMDGFDL 1906 Query: 70 LEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD 112 +IR+ R P+++I++ A+ LGV + L KP ++ Sbjct: 1907 TRNIRDDERTRDIPIIMITSRTASKHRNYAMELGVNEYLGKPYQE 1951 >UniRef50_Q10XL1 Response regulator receiver protein n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10XL1_TRIEI Length = 146 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 37/118 (31%), Positives = 69/118 (58%), Gaps = 2/118 (1%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 ++ K++LIV+D ++ R+L + +G T+LA++G++ALE + + PDL+I DI MP+M Sbjct: 1 MLNKKVLIVDDCKIVRTLFSRILTDIGLNTILASNGLEALEKVKLYHPDLVILDIIMPKM 60 Query: 65 NGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 NG ++ I++ + PV+ S D+ ++ G + + KP+K + MV Sbjct: 61 NGYQVCRQIKSQPKTMNIPVVFCSNKSLEVDVYWGMKQGADGYISKPLKKSELMTLMV 118 >UniRef50_B3E3M1 Response regulator receiver protein n=1 Tax=Geobacter lovleyi SZ RepID=B3E3M1_GEOLS Length = 122 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 46/105 (43%), Positives = 62/105 (59%), Gaps = 3/105 (2%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGA-TTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ILIV+D RSLL S +LG +TV A +G +AL +L DL++ DI MP +NGL+ Sbjct: 6 ILIVDDSAAMRSLLVSTLETLGTISTVQAPNGFEALRMLPREQVDLVLTDINMPDINGLE 65 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 LL IR+ PV+VIS + DI K L LG + L+KP + Sbjct: 66 LLSFIRSNPMYKDLPVVVISTEGSRKDIEKGLSLGANEYLVKPFQ 110 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 48/133 (36%), Positives = 69/133 (51%), Gaps = 5/133 (3%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+DE L G +AA G +ALE L TPDLM+ DI MP M+GL Sbjct: 4 KILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEELRRDTPDLMLLDIWMPGMDGLA 63 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 +LE I+ PV++IS N+ KA R+G D + KP+ E + + ++ Sbjct: 64 VLEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLS-----LERILVSIKNAL 118 Query: 129 FNSRVEEEERLFR 141 R+EEE L+R Sbjct: 119 DFHRLEEENLLWR 131 >UniRef50_C4XL40 Sensor protein n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XL40_DESMR Length = 513 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 35/102 (34%), Positives = 56/102 (54%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+VED++ R + +W G A DG +AL + PD ++ D+ +PR +G Sbjct: 7 KILVVEDDENVRRPVCAWLEISGYAVTEAGDGDEALRRIADIGPDAVLLDLRLPRRDGFG 66 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 +LE + D PV+VIS + + + +A RLG D L KP+ Sbjct: 67 VLEALSREHDAPPVIVISGQDGIDGVIRAFRLGATDYLQKPI 108 >UniRef50_B4SKU5 Sensor protein n=2 Tax=Stenotrophomonas maltophilia RepID=B4SKU5_STRM5 Length = 925 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+VED + R +L +LG T L+ DGV+AL L DL++ DI MPRM+G Sbjct: 806 RVLVVEDNPINRVILAEQLRTLGCTVALSQDGVEALSLCREQAFDLVVTDINMPRMDGHA 865 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 L +R G+ PV+ +A + + L G++ L KP+ D+ RLR+ + A Sbjct: 866 LARQLREDGNPVPVIGATANATAEERERCLASGMQGYLSKPI-DIARLRKALTA 918 >UniRef50_C0QK65 Two-component sensory box histidine kinase/response regulator protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QK65_DESAH Length = 445 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 49/151 (32%), Positives = 77/151 (50%), Gaps = 8/151 (5%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILIV+DE+ R LL A DG +ALE++ D++I D+ MPR++G Sbjct: 3 RILIVDDEEKIRYLLSIMIGRRAHLVDQAKDGAEALEMVSSTPYDMVITDMKMPRLDGTG 62 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 LL+ I PV+ I+A + +A+R+G D L KP ++ E V + ++ Sbjct: 63 LLKQIMLLDIPCPVVFITAFATVESAVEAMRMGAADYLTKPFEE-----ESVLLTVERTL 117 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQE 159 SR+ E RD +DN A A+K++ E Sbjct: 118 KLSRIMAEN---RDLKKQLDNGACASKMIFE 145 >UniRef50_D1CH70 Response regulator receiver protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CH70_THET1 Length = 139 Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/123 (32%), Positives = 75/123 (60%), Gaps = 8/123 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-GFTPDLMICDIAMPRMNGL 67 ++L+V+D++V R ++ S LG T A+DG +ALE++ G P L+I D +MPR+ GL Sbjct: 6 RVLVVDDDRVTRRIVSVKLSGLGYTVDEASDGQEALEMIASGELPTLVIVDQSMPRLTGL 65 Query: 68 KLLEHIRNRGDQT----PVLVISATENMADIAKALRLGVEDVLLKPVKD---LNRLREMV 120 +L+ IR+ D+ P++++++ ++ I + L GV+D ++KP R+R ++ Sbjct: 66 ELVRAIRSHQDERVAALPIIMLTSHQSEEAIVRGLEAGVDDYVIKPFSPNELAARVRTVL 125 Query: 121 FAC 123 + C Sbjct: 126 WRC 128 >UniRef50_UPI0001B559F0 two-component system, response regulator n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B559F0 Length = 247 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 57/107 (53%) Query: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 P G +L+VED+ R+LL + + G T A+DG A+ G PDL++ D+ +P Sbjct: 6 SPATGHTVLVVEDDASIRTLLTTALGAAGYTVASASDGRAAVFQAGSRRPDLIVLDVMLP 65 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 +G +L +R +G TPVL ++A + D L G +D + KP Sbjct: 66 DTDGFRLTRELRAQGVYTPVLFLTARAGVEDRITGLSSGGDDYVTKP 112 >UniRef50_A9KRH4 Two component transcriptional regulator, winged helix family n=19 Tax=Bacteria RepID=A9KRH4_CLOPH Length = 219 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 2/102 (1%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILIVEDEQ L+ S G A DG +A L+ + DL++ DI +P++NG +L Sbjct: 4 ILIVEDEQAINELIYLNLSDEGYRCTRAYDGEEAANLIENYNYDLILLDIMLPKINGYEL 63 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 ++I G TPV+ I+A ++ D + LRLG +D + KP + Sbjct: 64 FDYIHPLG--TPVIFITAKSDINDRIRGLRLGADDYISKPFQ 103 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 45/156 (28%), Positives = 81/156 (51%), Gaps = 4/156 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILIV+DE++ L S G AA G +A+ L F PD+ + DI +P +GL Sbjct: 5 RILIVDDEKLISWSLSVMLSKAGYAVETAASGSEAINKLSLFKPDMALLDIRLPDADGLD 64 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 LL+ + R ++ V++I+A ++ +AL+LG ED + KP ++ LR ++ Sbjct: 65 LLQQFKLRDEELSVIMITANADVDSAVRALKLGAEDYIGKPF-NMEALRHVIDKAFEKRQ 123 Query: 129 FNSRVE---EEERLFRDWDAMVDNPAAAAKLLQELQ 161 +++ +E R + D +V N A+ L + ++ Sbjct: 124 LREKLDFFRKELRKKTEHDKLVGNSASMVNLFKMIK 159 >UniRef50_A9B4G5 Multi-sensor signal transduction histidine kinase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B4G5_HERA2 Length = 702 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 49/140 (35%), Positives = 75/140 (53%), Gaps = 7/140 (5%) Query: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 QPLV LIV+D+ RS++ + + G A GV AL+ + PD ++ DI MP Sbjct: 10 QPLV----LIVDDQSSNRSIVRRYVEAAGYLAAEAEHGVAALDFVRQTPPDAILLDIFMP 65 Query: 63 RMNGLKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 ++G+++L+ IR + D P++V++A +A +A G +D LLKPV D LR + Sbjct: 66 GIDGIEVLKTIRAQRDHHYIPIIVVTAAAELAVRQQAYFEGADDFLLKPV-DSATLRARL 124 Query: 121 FACLYPSMFNSRVEEEERLF 140 A + SRVE E F Sbjct: 125 RAAIRLKHVLSRVEAERERF 144 >UniRef50_C0D691 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D691_9CLOT Length = 253 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 69/115 (60%), Gaps = 4/115 (3%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLA---ADGVDALELLGGFTPDLMICDIAMPRMN 65 +++I++DEQ+ R L G +A ADG + L+LL +PD+ + D+ MP+ N Sbjct: 3 RLVIIDDEQLIRRGLQKIIEMSGGEYEIAGEAADGEEGLKLLLKVSPDIAVVDVKMPKKN 62 Query: 66 GLKLL-EHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 GL+++ E++ +T +V+SA ++ KA++LG+ D LLKPV + LR++ Sbjct: 63 GLEMIGEYLAQGAGRTRFIVLSAYDDYVFTRKAIKLGICDYLLKPVNRFDFLRQL 117 >UniRef50_A6WJS0 Response regulator receiver n=6 Tax=Shewanella RepID=A6WJS0_SHEB8 Length = 226 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 55/164 (33%), Positives = 86/164 (52%), Gaps = 13/164 (7%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTV--LAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 ++IVEDE L+ + S V +A+D A LLG TPDL++ D+ +P NGL Sbjct: 4 VIIVEDEVEVAHLVAQYLFSTNRYKVIGMASDISTARSLLGAITPDLLLLDVYLPDGNGL 63 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 LL +R++G ++ V++++A + + + KA++LGV D L+KPV L+RL + + S Sbjct: 64 NLLAELRSQGIRSEVVLLTAAKEVQILEKAMQLGVFDFLVKPVL-LSRLDQAL------S 116 Query: 128 MFNSR----VEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQV 167 F SR EE DA ++ P K L V Q+ Sbjct: 117 RFESRQLKLSATEELTQSVVDAFMEVPTGTTKAAARLPKGVDQL 160 >UniRef50_Q0PIJ8 Spo0F n=1 Tax=Heliobacillus mobilis RepID=Q0PIJ8_HELMO Length = 125 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 64/104 (61%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 V +++L+V+D++ R LL + T LA+DG AL+ L + L++ D+ MP M+ Sbjct: 4 VCERVLVVDDQKGVRQLLREALRIVDVTAELASDGQQALDRLSQESFGLVLLDMKMPGMS 63 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 GL++L +R RGD TPV +++A E + +A RLG E ++KP Sbjct: 64 GLEVLTEMRKRGDPTPVWMMTAYEEVKLYEEAQRLGAEQYVIKP 107 >UniRef50_A6Q2D2 Two-component response regulator n=2 Tax=Epsilonproteobacteria RepID=A6Q2D2_NITSB Length = 214 Score = 71.2 bits (173), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 57/101 (56%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL++EDE + ++ + +G A DG A EL+ + DL+I DI +P ++G Sbjct: 2 KILLMEDEIILCDSIERYLEKIGHQVTTAYDGEQAFELIQQSSFDLLILDINVPNIDGFT 61 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 L+E ++ TPV+ IS+ ++ DI K LG +D + KP Sbjct: 62 LMELLKEHKRYTPVIFISSLTDIEDITKGFELGCKDYIKKP 102 >UniRef50_Q0AUA3 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AUA3_SYNWW Length = 123 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 38/113 (33%), Positives = 66/113 (58%), Gaps = 1/113 (0%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 ++I+IV+D++ R LL+ F G AADG +A+E +G F P +++ D+ MP MNGL Sbjct: 3 RRIMIVDDQKGVRRLLEELFKREGWEVYAAADGKEAIEKVGQFQPSILLIDMKMPNMNGL 62 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 + + I + + +++++A M + +AL GV + KP D+ LR+ V Sbjct: 63 EASQKILEKHQELAIIMMTAYGEMEVVKRALESGVRKCITKPF-DILYLRDEV 114 >UniRef50_B4W013 PAS fold family n=2 Tax=Bacteria RepID=B4W013_9CYAN Length = 974 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 45/155 (29%), Positives = 83/155 (53%), Gaps = 10/155 (6%) Query: 4 PLVGKQ----ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDAL-ELLGGFTPDLMICD 58 PL+ K IL+V+DE + ++ + S V A G++AL ++ GF PDL+I D Sbjct: 570 PLMSKTGEFTILVVDDEPINLQVVTNHLSVHNYAIVQATSGIEALAKIEQGFKPDLVILD 629 Query: 59 IAMPRMNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD---L 113 I MP+M+G ++ + IR + P+++++A E ++D+ + L LG D L KP+ + Sbjct: 630 IMMPKMSGYEVCQKIRQCFPATEMPIILLTAKEQVSDLVEGLSLGANDYLTKPISKHELI 689 Query: 114 NRLREMVFACLYPSMFNSRVEEEERLFRDWDAMVD 148 R++ + + V +E F ++++VD Sbjct: 690 ARIKTHLHLSNINRAYGRFVPQEFLRFLGYESIVD 724 Score = 60.8 bits (146), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 7/108 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSL----GATTVLAADGVDALELLGGFTPD--LMICDIAMP 62 +IL+V+DE L+ F + A +GVDALE L PD +++ DI MP Sbjct: 4 KILVVDDEPDLELLIRQKFRKKIRRQELQFIFAHNGVDALETLHA-QPDIDMVLTDINMP 62 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 M+GL LL H+ T +++SA +M +I KA+ LG D L KP+ Sbjct: 63 EMDGLTLLTHLAQDYPTTKAVILSAYGDMENIRKAMNLGAFDFLTKPI 110 >UniRef50_A8GZ93 Response regulator receiver modulated serine phosphatase n=6 Tax=Gammaproteobacteria RepID=A8GZ93_SHEPA Length = 400 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 61/221 (27%), Positives = 111/221 (50%), Gaps = 9/221 (4%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF-TPDLMICDIAMPRM 64 +GK+IL+VED +V + L+ SS G V A DGVDA+ L + L++ D MP++ Sbjct: 1 MGKEILLVEDNKVMQLLMTKMLSSRGYQVVTAFDGVDAIAQLEKHPSIQLVLSDWMMPKL 60 Query: 65 NGLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 NG++L H++ + G +++S ++ I + + G +D + K ++N L + A Sbjct: 61 NGIELCYHLKSSDYGRYIFFVLLSGRDDEESIVEGINAGADDFVAKET-NINELDARLKA 119 Query: 123 CLYP-SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 + N + + L R + + + +A L++ + P + + ++Y + +A Sbjct: 120 GFRSLELHNQLMSKNIELDRAYATIRQDLDSANALIRRMLPSQTEFLG-VELHYTHIPSA 178 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRAL 222 G +L L E +A Y DV AGH GV +AL+ A+ Sbjct: 179 QIGGDMLGCMQLDEEHVAIYLFDV--AGH-GVASALMSFAI 216 >UniRef50_A0LD37 Sensor protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LD37_MAGSM Length = 560 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 41/127 (32%), Positives = 74/127 (58%), Gaps = 6/127 (4%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAA-DGVDALELLGGFTPDLMICDI 59 +T P + +ILIV+D+Q R+L+ ++ + L A DG A + PDL++CD+ Sbjct: 434 VTLPHIRPRILIVDDDQDIRTLIKTYLNILEDCEFFEAWDGQTAYTNMVELRPDLVLCDV 493 Query: 60 AMPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKD---LN 114 MP M+G +LL+ +R+ D + P+++I++ + + LR G DV++KP+ L Sbjct: 494 YMPLMDGFQLLKKVRSTTDIQKIPIIMITSDRALETQERLLRKGAYDVIVKPLNGDELLT 553 Query: 115 RLREMVF 121 R+R +V+ Sbjct: 554 RVRRIVW 560 >UniRef50_C0GSA6 Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GSA6_9DELT Length = 333 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/173 (28%), Positives = 91/173 (52%), Gaps = 25/173 (14%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+VED+++ R L + + G + AADG +AL+L P +++ D MP M+GL+ Sbjct: 2 KVLVVEDDKISRKTLSLYARNTGYEPIAAADGKEALKLWHEHRPRIILTDWNMPVMDGLE 61 Query: 69 LLEHIR-NRGDQ-TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 L+ +R + GD+ T +++I++ ++ D+ + GV+D L KPV Sbjct: 62 LISRVRASEGDEYTYIIMITSRDDSTDLIRGFESGVDDYLTKPVD--------------K 107 Query: 127 SMFNSRVEEEERLF--RDWDAMVDNPAAAAKLLQELQPPV----QQVISHCRV 173 S R++ ER+F + D ++ A AKL + P +++ S+CR+ Sbjct: 108 SELLVRLKASERIFSLQSKDTVI---FAMAKLAETRDPETGLHLERIQSYCRI 157 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 34/102 (33%), Positives = 62/102 (60%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K++L+V+DE+ LLD + G T + DG AL L D ++ DI +P+++G+ Sbjct: 10 KRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGI 69 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 ++ + +R++G +TP++++SA + D AL LG +D + KP Sbjct: 70 EVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKP 111 >UniRef50_A8R814 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8R814_9FIRM Length = 498 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 86/166 (51%), Gaps = 20/166 (12%) Query: 9 QILIVEDEQVFRSLLDSWFSSLG---ATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 ++LIVEDE++ R L S +L + A +G + L + P ++I DI MP M+ Sbjct: 10 KVLIVEDEKIERDHLVSVIEALTLPFEKILTATNGKEGLSVFEKEQPHIVIADINMPMMD 69 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL+++E I+ + + T ++S+ + + KALR+GV+D +LKP RE + A L Sbjct: 70 GLQMIEAIKKQREATVCFILSSYDYFSYAQKALRIGVKDFILKPSD-----RETICALLT 124 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHC 171 ++ EE RL + KL+Q++ +++I +C Sbjct: 125 KAL------EEMRL------RANRYEQEIKLIQKMHDFNEEIIKNC 158 >UniRef50_A0YCS2 Probable two-component response regulator n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCS2_9GAMM Length = 408 Score = 70.9 bits (172), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 62/306 (20%), Positives = 137/306 (44%), Gaps = 12/306 (3%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +Q+L++++++V R + ++ G + A++ L++L P++++CD+ + Sbjct: 6 QQLLLIDNDEVERKSVAAYLKGAGFIVLEASNVSQGLDILADHQPEVVLCDLNATGTDS- 64 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 L+ I++ TPV+V++ M+D+ ALR G D L+KP+ D+ L + C Sbjct: 65 GPLQAIKSDFADTPVIVMATDGVMSDVVWALRYGAADYLIKPIADMEVLEHAISRCQEQR 124 Query: 128 M-------FNSRVEEEERLFRDWDAMVDNPAAAAKLLQ-ELQPPVQQVISHCRVNYRQLV 179 + ++E+ + ++ +++ A + +Q ++ PP + + ++R + Sbjct: 125 QLRQQNLDYRQKLEQANQGLQESFKVLELDQLAGREVQLKMLPPTVKQFGKYQFSHRIIP 184 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 + G +D + ++ + ++ DV+ G + +LL+ +F + L + + Sbjct: 185 SFYLSGDFIDYFTVGDDFVVYFIADVSGHGASSAFVTVLLKNMFARKRSDYLHQNDASIL 244 Query: 240 ELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAG---LNATLNTGEHQVQIS 296 A+L N L ++ L VG L AG L GE Q + Sbjct: 245 SPAAMLDIANRNLLTTDIGKHATLCVGVIDLRTDTLSYSVAGHLPLPMLTVDGEPQYLQT 304 Query: 297 NGVPLG 302 G+P+G Sbjct: 305 EGMPVG 310 >UniRef50_D2R0C0 Response regulator receiver protein n=5 Tax=Planctomycetaceae RepID=D2R0C0_9PLAN Length = 149 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 45/148 (30%), Positives = 80/148 (54%), Gaps = 16/148 (10%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILI +D Q R LL+++ +++ T +A DG D L + F PDL++ D+ MP+++G + Sbjct: 6 RILIADDNQPNRELLEAYLATVDCDTEIAVDGQDTLAKVKSFAPDLILLDVMMPKLSGFE 65 Query: 69 LLEHIR----NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD---LNRLREMVF 121 + + ++ +RG +L+++A DI +A++ G +D L KPV L R+ M+ Sbjct: 66 VCQKLKSDPASRG--IMILMVTALNEAGDIERAVKAGTDDFLSKPVNKVELLKRVENML- 122 Query: 122 ACLYPSMFNSRVEEEERLFRDWDAMVDN 149 +E ERL R + M D+ Sbjct: 123 ------KLKDVTDELERLRRYIEGMEDS 144 >UniRef50_C1ZGQ6 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZGQ6_PLALI Length = 143 Score = 70.9 bits (172), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 6/115 (5%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K ILI++D++ S L + G LA +G++ L+ +PDL+I D+ MPRM G Sbjct: 5 KLILIIDDDREIASTLQAVLQHAGHRVTLAPNGMEGQRLIESLSPDLVITDMMMPRMGGF 64 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP------VKDLNRL 116 +LE IR + V++I+A E A A LGV+D L KP V+ +NR+ Sbjct: 65 PVLEFIRTLAKKPRVIMITANEGGRHKAYAEMLGVDDYLRKPFPMEALVESVNRI 119 >UniRef50_Q2SBW1 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=4 Tax=Gammaproteobacteria RepID=Q2SBW1_HAHCH Length = 578 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 89/344 (25%), Positives = 145/344 (42%), Gaps = 72/344 (20%) Query: 1 MTQPLVGKQ----ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMI 56 M ++G Q ILI +D Q R +L + G T A DGVDA+E F PD+++ Sbjct: 9 MASSVLGSQKTLKILIADDNQSDRMILQNIVKKQGHDTATAVDGVDAIEKFSEFRPDIVL 68 Query: 57 CDIAMPRMNGLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKP----- 109 D MPRM+G + I+ D P++ +++ + +AK L G +D L KP Sbjct: 69 LDALMPRMDGFEAARKIKLLAGEDLIPIIFLTSLSDAESLAKCLEAGGDDFLSKPYNRII 128 Query: 110 ----VKDLNRLREMVFACLYPSMFNSR---VEEEERLFRDW---DAMVDNPAAAAKL--- 156 + NR+R M + ++ R E + + R+ + DN A L Sbjct: 129 LQAKINAFNRMRIM-----HKTLLRQRDQIAEHNDHMVREQQVAKTVFDNVAHVGCLGAN 183 Query: 157 -LQELQPPVQQVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLA 215 ++ L P+ N L+A KP + D T G + Sbjct: 184 NIKHLLSPL------AVFNGDVLLACQKP----------SGGMHVLLGDFTGHGLPAAIG 227 Query: 216 ALLLRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYY------- 268 A+ L +F G+ + A LG +L++VN LR+ LP VG++ Sbjct: 228 AMPLAEIFYGMTSKGYA--------LGDILREVNQKLRKI-LP------VGFFCCACMAE 272 Query: 269 -HRELKNLILVSAGL-NATLNTGEHQVQI-SNGVPLGTL-GNAY 308 + E + + + GL + L G+ +++ SN +PLG L G A+ Sbjct: 273 LNFEQEEIEIWIGGLPDCYLVQGDQLIKVASNRLPLGILKGEAF 316 >UniRef50_C5CGF8 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGF8_KOSOT Length = 228 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 40/131 (30%), Positives = 70/131 (53%), Gaps = 1/131 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+VED++ R LL+ + G + G+DAL + F PD+++ DI +P+++G + Sbjct: 2 KVLVVEDDEGLRRLLNLELTHYGYEVKTSGKGIDALRMYRDFCPDIVLLDILLPQLDGFE 61 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 LL R ++++S + KA RLGV+D + KP D+ L + A + Sbjct: 62 LLVAFREIFPGAGIIILSVINDKESKLKAFRLGVDDYVTKPF-DMEELLARIEALARRAF 120 Query: 129 FNSRVEEEERL 139 + RV+ ERL Sbjct: 121 LHERVKNNERL 131 >UniRef50_Q2SA42 Chemotaxis protein histidine kinase and related kinase n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SA42_HAHCH Length = 1151 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 67/117 (57%), Gaps = 5/117 (4%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+D RS L G V A+DG+DA+E L TP+L++ D+ MPRM+GL+ Sbjct: 1034 KILVVDDSLSVRSTLKQLLQDCGFEVVTASDGLDAVEKLRHITPNLLLVDMEMPRMDGLE 1093 Query: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKD---LNRLREMV 120 L H+R + D PV+++++ + + A + GV KP D ++ +RE++ Sbjct: 1094 LTRHLRQQQDWANMPVVMLTSRSHEKHRSLAHKAGVTAYATKPYNDNELMDTIRELL 1150 >UniRef50_Q07VY4 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Shewanella frigidimarina NCIMB 400 RepID=Q07VY4_SHEFN Length = 696 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 60/104 (57%), Gaps = 2/104 (1%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +LIV+D+ V R L+ S + A+ G +A++L TPDL++ D++M +MNG + Sbjct: 10 VLIVDDDPVIRILMRRALSHSVGNIIEASSGEEAIQLFSEHTPDLILLDVSMDKMNGFEC 69 Query: 70 LEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 IR+ GD +++++A + DI KA +G D + KPVK Sbjct: 70 CSVIRSLPEGDNVAIIMVTALDQPQDIQKAFDVGATDFMTKPVK 113 >UniRef50_C1XFY4 Two component transcriptional regulator, winged helix family n=2 Tax=Meiothermus RepID=C1XFY4_MEIRU Length = 218 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 59/101 (58%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+VED LL S G LA D A LL F DL++ D+ +P +G++ Sbjct: 2 RLLLVEDHTGLGRLLQDTLSGQGFAVDLAEDMASADGLLQSFPYDLVVLDLGLPDGDGIE 61 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 LL+ +R RG++ PVL+++A + +AD K L G +D L+KP Sbjct: 62 LLQSLRARGEKMPVLILTARDGLADRVKGLEAGADDYLVKP 102 >UniRef50_D2TTF4 Two-component system response regulator n=3 Tax=Proteobacteria RepID=D2TTF4_CITRO Length = 441 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 97/200 (48%), Gaps = 16/200 (8%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+V+D+ ++L + G LA G +ALE G DL++CD+ M M+G++ Sbjct: 8 ILVVDDDVSHCTILQALLRGWGYNVALAYSGREALEKASGHVFDLVLCDVRMAEMDGIET 67 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 L I+ PVL+++A ++ +AL+ G D L+KP+ D +RL+E + L + Sbjct: 68 LREIKALNPAIPVLIMTAFSSVETAVEALKTGALDYLIKPL-DFDRLQETLEKSL--AHA 124 Query: 130 NSRVEEEERLFRDWDAMVDNPAAAAKLLQEL---QPPVQQVISHCRVNY-RQLVA----- 180 E + MV A +LL E+ P V+ H ++LVA Sbjct: 125 QEVAGELPSVSASQSGMVGKSPAMQQLLSEIAMVAPSDATVLIHGDSGTGKELVARALHA 184 Query: 181 ----ADKPGLVLDIAALSEN 196 +DKP + L+ AAL+E+ Sbjct: 185 SSARSDKPLVTLNCAALNES 204 >UniRef50_D1U6T9 Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U6T9_9DELT Length = 473 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 7/138 (5%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L G ++L+V+D R L + G A +G +ALE+L F PDL+I D+ MP M Sbjct: 138 LTGSKVLVVDDSSSIRLFLRVGLTENGFAVRTAVNGREALEMLADFRPDLIITDLMMPEM 197 Query: 65 NGLKLLEHIRNRGDQT-PVLVISATENMADIAKALRLGVEDVLLKP--VKDLNRLREMVF 121 +G +L ++ T PV+V+S + A + + LR G L+KP V L+ + E +F Sbjct: 198 DGFELCRALKGSQFSTIPVIVMSTMGDKAIMRRLLRGGAASFLIKPFSVTQLSTVIEEIF 257 Query: 122 ACLYPSMFNSRVEEEERL 139 + S F +EE+ERL Sbjct: 258 S----SNFRLLLEEKERL 271 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 4/70 (5%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDAL--ELLGGFTPDLMICDIAMPRMN 65 ++IL+V+D R ++ ++ G LA DG D L + G F DL+I D+ MPRM+ Sbjct: 15 QRILVVDDSVSVRYAMEKHLTAAGFAVTLAVDGEDGLGKAVEGDF--DLIITDVDMPRMD 72 Query: 66 GLKLLEHIRN 75 G +L + ++ Sbjct: 73 GFELCKRLKG 82 >UniRef50_Q1JZC1 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JZC1_DESAC Length = 455 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 76/147 (51%), Gaps = 6/147 (4%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ILIV+DE+ +R +L S+G A + AL++L G DL+I D+ MPRM+G+ Sbjct: 3 HILIVDDEKNYRIVLGQLLESVGHHVTRADNPYAALDILSGEQIDLIISDLKMPRMSGID 62 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 L H+ + P ++++A + +A+++G D LLKP + L + A Y + Sbjct: 63 FLRHVNDEIGPVPFIMLTAYATVQTALQAMKIGAFDYLLKPFDNEEMLLTVDKALDYSKL 122 Query: 129 FNS----RVEEEERLFRDWDAMVDNPA 151 N R E E+ RD + ++PA Sbjct: 123 QNENWLLRRELEQN--RDRTLVGNSPA 147 >UniRef50_C1A9Q4 Putative response regulator n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9Q4_GEMAT Length = 183 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 47/169 (27%), Positives = 81/169 (47%), Gaps = 15/169 (8%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+DE R +L +S G A D +A LL PDL++ D+ +P ++GL L Sbjct: 5 VLVVDDEPALREVLSQRLTSWGYRVATAGDVQEAETLLNTSEPDLVLSDVVLPGLSGLDL 64 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 L + R PV++I+A N+ +A++ G D L KP+ A L + Sbjct: 65 LRRFKARNAALPVVLITAHANVDAAVEAMKAGATDFLTKPID---------TATLRAVLE 115 Query: 130 NSRVEEEER-LFRDWDAMVDNPA-----AAAKLLQELQPPVQQVISHCR 172 + RV++ ER R D + PA ++ +++++ V + CR Sbjct: 116 SVRVDQRERKAARSLDEALQEPATGGLIGSSAAMRDVRAIVAHRVHRCR 164 >UniRef50_A0RG02 Two-component response regulator n=92 Tax=Bacteria RepID=A0RG02_BACAH Length = 236 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 63/101 (62%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++LIVEDEQ +++L ++ + +G DAL+ + T DL++ DI +P +NGL+ Sbjct: 14 RVLIVEDEQDLQNILVKRLNAEHYSVDACGNGEDALDYINMATYDLIVLDIMIPGINGLQ 73 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 +L+ +R TPVL+++A + + D K L LG +D L+KP Sbjct: 74 VLQKLRADNHTTPVLLLTAKDTIDDRVKGLDLGADDYLVKP 114 >UniRef50_C0YVQ4 Response regulator n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YVQ4_9FLAO Length = 224 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 39/100 (39%), Positives = 59/100 (59%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+VED+Q + L S G LA G A ELL + D+++ DI +P ++G++L Sbjct: 3 ILLVEDDQRISNFLIKGLSEAGYNITLADSGEKARELLHTYDFDIILMDIMLPGLDGMQL 62 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 + IR +G+ TP+LV+SA + D K L +G +D L KP Sbjct: 63 TQIIRFKGNYTPILVLSALNSPDDKIKMLDMGADDYLSKP 102 >UniRef50_A8RNS9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RNS9_9CLOT Length = 273 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 54/190 (28%), Positives = 99/190 (52%), Gaps = 10/190 (5%) Query: 9 QILIVEDEQVFRSLLD---SWFSSLGATTV-LAADGVDALELLGGFTPDLMICDIAMPRM 64 +++IVEDE++ R L +W +G V A DG + LE + PD+++ DI MP+M Sbjct: 4 KVVIVEDEEIIRKGLTFALNWLD-MGCIIVGTAKDGAEGLETIRREQPDIVLTDIKMPKM 62 Query: 65 NGLKLLEH-IRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 NGLK++E I+++ Q LV+++ +A+ +GV D LLKPV D + L+E + Sbjct: 63 NGLKMIETAIKDQ--QFYSLVLTSYSEFELARQAIHMGVTDYLLKPV-DEDELKESLDKI 119 Query: 124 LYPSMFNSRVEEEERLFRDWDAMV-DNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 + S+ E+ E++ +D V D + P V++ + +Y++ V+ + Sbjct: 120 RQQIAYASKYEKIEKISQDRLLTVYDEWKIFDSAKNSMDPYVKRTYEFVKQHYKEKVSIN 179 Query: 183 KPGLVLDIAA 192 + L ++ Sbjct: 180 QVAESLGVST 189 >UniRef50_B1YJZ1 Two component transcriptional regulator, winged helix family n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YJZ1_EXIS2 Length = 220 Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 1/101 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ILI EDE R LL S G AA+G++AL+L T DLMI DI MP ++G + Sbjct: 3 HILIAEDEFDIRELLTELLESSGYHVTSAANGMEALKLHQSATFDLMILDIMMPYLDGFE 62 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 + + +R + QTP++ ++A ++ + K LG++D + KP Sbjct: 63 VAQQVR-KTSQTPIIFLTALQDEDNQVKGFDLGIDDYIAKP 102 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 37/102 (36%), Positives = 59/102 (57%), Gaps = 1/102 (0%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 ++IL+V+D+ + S G + A DG++ALE L PDL++ DI MPR++G Sbjct: 3 EKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLSGF 62 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 ++L+ IR R D PV++++A D L LG +D + KP Sbjct: 63 EVLKKIRERSD-VPVILLTAKSQSVDKVVGLELGADDYITKP 103 >UniRef50_B4VIF1 PAS fold family n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VIF1_9CYAN Length = 1525 Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 11/155 (7%) Query: 3 QPLVGK-QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-GFTPDLMICDIA 60 +PL+ +ILIV+D+ V R +L ++ S AA+G +AL+++ GF PDL++ D Sbjct: 971 EPLINPFKILIVDDDTVNRQILVNYLSLENYQLAQAANGREALDIINNGFQPDLILLDAI 1030 Query: 61 MPRMNGLKLLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDL----- 113 MPRM G + + +R T PVL+++A E + D+ +GV D L KP+ Sbjct: 1031 MPRMTGYDVCKKLREFYPPTELPVLMLTANEQVNDLVAGFSVGVNDYLTKPIAKYKLLVR 1090 Query: 114 --NRLREMVFACLYPSMFNSRVEEEERLFRDWDAM 146 LR A ++ + E E RL + +A+ Sbjct: 1091 IKTHLRLSTIAKENAQLYAAVRESERRLMQFLEAV 1125 >UniRef50_A6QCB8 Two-component response regulator n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6QCB8_SULNB Length = 216 Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 38/124 (30%), Positives = 65/124 (52%), Gaps = 1/124 (0%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL++ED+Q+F L+ + G A D ALE+ DL + D+ +P NG L Sbjct: 4 ILVLEDDQLFNETLEDFLEEEGYAVETAMDPYSALEMSYKQVFDLYLFDVNLPYENGFDL 63 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 L+ +R GD TP + +++ E+ A +++ G +D + KP+ DL+ L + A L + Sbjct: 64 LQKLRQSGDTTPTIFLTSREDKASLSEGFEKGADDYMKKPI-DLDELMLRIQAVLRRQIR 122 Query: 130 NSRV 133 R+ Sbjct: 123 QERI 126 >UniRef50_C8N703 Putative uncharacterized protein (Fragment) n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N703_9GAMM Length = 1709 Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 34/105 (32%), Positives = 57/105 (54%), Gaps = 2/105 (1%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+D R + A DG+DA+E+L GFTPD+++ DI MPRM+G + Sbjct: 1587 VLVVDDSVTMRKVSTRLLERHHYNVATAKDGLDAIEVLAGFTPDIILLDIEMPRMDGFEF 1646 Query: 70 LEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKD 112 H+RN + P+++I++ +A +GV+ L KP + Sbjct: 1647 ASHVRNSSNVRDVPIVMITSRTGDKHRERADAIGVQGYLGKPYSE 1691 >UniRef50_B8DLW6 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=5 Tax=Desulfovibrio RepID=B8DLW6_DESVM Length = 739 Score = 70.5 bits (171), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 70/134 (52%), Gaps = 4/134 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL ++D+ RS L ++ G + A +G LE PDL++ D+ MP M G++ Sbjct: 7 RILTIDDDVNVRSNLVAYLEDSGFDVIEAENGRRGLEAFTEHAPDLVLVDLRMPVMGGME 66 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 +LE +R + PV+V+S + + +ALR G D + KPV D+ L V L Sbjct: 67 VLERLREDAPEIPVIVVSGVGVLEEAVEALRHGAWDYVTKPVTDMRVLEHAVNKALE--- 123 Query: 129 FNSRVEEEERLFRD 142 +R+ EE + +R+ Sbjct: 124 -RARLLEERKRYRE 136 >UniRef50_A5GBG4 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=2 Tax=Geobacter RepID=A5GBG4_GEOUR Length = 709 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 3/146 (2%) Query: 10 ILIVEDEQVFRSLLDSWFSSL--GATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +L VED++ R L+ ++ T + A++G + L L PD+++ D+ MP M+G+ Sbjct: 13 LLYVEDDRATRELISLVITNKFPDVTLLQASNGQEGLALFKKHAPDIVLTDMQMPVMDGI 72 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 + + I+ + ++VISA + I A+ +G+ +LKP+ N+LR ++ C+ Sbjct: 73 TMAKEIKQLNKEAKIIVISAHNDTGHIIDAIDIGINHYVLKPINH-NKLRAVIGQCMTSI 131 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAA 153 + ++ E+E+ R V+ A Sbjct: 132 KWERQIREQEKFIRKLSRAVEQSPVA 157 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 70.1 bits (170), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 5/160 (3%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K IL V+DE LL+ G + A DG +ALE++ D ++ D+ MPRM+GL Sbjct: 6 KYILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALEVINAQQVDCVVTDLHMPRMDGL 65 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 +LL+ +R + PV++++A + A++ G D +L+P L E+ A Sbjct: 66 QLLKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPFD----LAELELAIKRAL 121 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQV 167 F SR+ E R R+ A + +Q L ++QV Sbjct: 122 SF-SRLVVENRFLREDKADTTGLIGNSPAMQHLAESIRQV 160 >UniRef50_A8RM75 Putative uncharacterized protein n=2 Tax=Clostridium RepID=A8RM75_9CLOT Length = 253 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 63/107 (58%), Gaps = 3/107 (2%) Query: 9 QILIVEDEQVFRS---LLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 ++++VEDE + R L W + AA+G + EL +PD+++ D+ MPRM+ Sbjct: 3 KVIVVEDETMVRRGIILTIDWAALDCVIAGEAANGEEGAELAVRLSPDIIVTDVKMPRMD 62 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD 112 G++++ +R +G + ++++A + ALRLGV D LLKP++D Sbjct: 63 GVEMITKLREQGCRAKFIILTAYSDFKYAQSALRLGVSDYLLKPLRD 109 >UniRef50_Q04D59 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=16 Tax=Bacteria RepID=Q04D59_OENOB Length = 224 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 68/116 (58%), Gaps = 1/116 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+VED++ F SL+ + +S G + AD A + L DL++ D+ MP ++G++ Sbjct: 3 KILVVEDDENFNSLVSRYLASNGFEVISCADAQKAYDALYNNLFDLIVTDVMMPGIDGVE 62 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 + +R + P+L ++A +++ R+G++D L+KP+ DL+ L+ + A L Sbjct: 63 FAKTVRQLNENIPILFVTARDDIKTKKAGFRVGIDDYLVKPI-DLDELKLRISAVL 117 >UniRef50_C7PQL7 Sensor protein n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PQL7_CHIPD Length = 606 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/109 (34%), Positives = 60/109 (55%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 TQPL G +ILI ED+ + + LL+ + GA A A+ L + PD++I D M Sbjct: 478 TQPLAGVKILIAEDDMMNQKLLEKILTLAGAQVACADTAEQAISQLAVYHPDVIISDHHM 537 Query: 62 PRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 P M G+ LLE++R+ TPV++ S + + +A + G +LKP+ Sbjct: 538 PGMGGIGLLEYLRHVHLHTPVIIASGSTSEEHVAHFQKAGAAAHILKPI 586 >UniRef50_C6CTP9 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CTP9_PAESJ Length = 537 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 64/106 (60%), Gaps = 5/106 (4%) Query: 9 QILIVEDEQVFR---SLLDSWFSSLGATTVLAAD-GVDALELLGGFTPDLMICDIAMPRM 64 +ILIV+DEQ R LL W LG + AD G A+E+LG P+++I D+ MP Sbjct: 2 KILIVDDEQHVREAVKLLIDW-EQLGIKEIYEADNGDSAIEMLGNMQPEIVITDMRMPNR 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 +G++LL ++ +G ++ +VIS ++ + +++ G +D LLKP+ Sbjct: 61 DGVELLAWMKEQGRKSKTIVISGYDDFHLVRSSMKYGGQDYLLKPI 106 >UniRef50_B5Y9L0 Putative transcriptional regulator n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y9L0_COPPD Length = 230 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 65/112 (58%), Gaps = 6/112 (5%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +I++VED+ F LL + G DG L+L + L++ D+ +P ++G + Sbjct: 23 KIILVEDDVSFAELLANRLEEFGFQVEHYEDGASFLDLKP--SGHLILLDLMLPNLDGFR 80 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 +LE +R+R D+TPV+V+SA D+ KAL LG D + KP+ R++E++ Sbjct: 81 VLEVLRHRKDRTPVIVVSARSAEEDVVKALELGAADYVFKPI----RMKELI 128 >UniRef50_A5WHF4 CheA signal transduction histidine kinase n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WHF4_PSYWF Length = 1609 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 59/106 (55%), Gaps = 2/106 (1%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 QILIV+D R + G +A DGV+A+E+L PDLM+ DI MPRM+G + Sbjct: 1492 QILIVDDSVTVRKVTARMLQRQGYQAHVARDGVEAVEMLQTLRPDLMLLDIEMPRMDGFE 1551 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKD 112 + H+R+ P+++I++ +AL++GV L KP ++ Sbjct: 1552 VATHVRHNQAISHLPIIMITSRSGDKHRQRALKIGVNAYLGKPFQE 1597 >UniRef50_D1P911 DNA-binding response regulator TrcR n=1 Tax=Prevotella copri DSM 18205 RepID=D1P911_9BACT Length = 243 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/148 (29%), Positives = 70/148 (47%), Gaps = 4/148 (2%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+VEDE +L + G A DG + L + PD+++ D+ MP+M+G ++ Sbjct: 6 VLLVEDETSLAMILSDILEAQGFEMRTARDGEEGLRMFDEQKPDVLVADVMMPKMDGFEM 65 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 + IR +TPVL ++A + D+ + LG D L KP + + C S Sbjct: 66 VRRIRKTDSRTPVLFLTARSAVNDVVEGFELGGNDYLKKPFAIQELIVRIKSLCHRASAG 125 Query: 130 NSRVEEEERLFRDWDAMVDNPAAAAKLL 157 N EE+E + DNP AA + L Sbjct: 126 NISSEEQE----GGNVSPDNPDAADQWL 149 >UniRef50_UPI00017880F1 two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017880F1 Length = 518 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/108 (40%), Positives = 64/108 (59%), Gaps = 5/108 (4%) Query: 9 QILIVEDEQVFRSLLDS---WFSSLGATTV-LAADGVDALELLGGFTPDLMICDIAMPRM 64 ++LIV+DE R L S W + LG V AA+G +ALE G + PDLM+ DI MP M Sbjct: 3 KVLIVDDEPKLREGLKSIVPW-TELGYQVVDTAANGNEALEKHGKYDPDLMLIDIRMPGM 61 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD 112 +GL+L+E IRN + +L++S + +A+ V+ LLKPV + Sbjct: 62 DGLQLIEAIRNLDAEIHLLILSGYADFDYAKRAISHRVDGYLLKPVDE 109 >UniRef50_Q3B305 Two component transcriptional regulator, Fis family n=9 Tax=Chlorobiaceae RepID=Q3B305_PELLD Length = 492 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/135 (25%), Positives = 77/135 (57%), Gaps = 1/135 (0%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +LI +D++ R + + +G T ++ +G++ +E + +PD+++ DI MP +G ++ Sbjct: 28 VLIADDDETSRRIFSHFVRKMGYTALVVQNGMECIESITEQSPDVILLDINMPGKDGFEV 87 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 + H++ +TPV++I+A+ ++ K ++LG + L KP+ +++RL ++ L S Sbjct: 88 MLHMKTEHIKTPVIIITASHDIPQAVKCIKLGAYEYLTKPL-NIDRLEIVMRNSLAESAL 146 Query: 130 NSRVEEEERLFRDWD 144 V+ ++ R D Sbjct: 147 QIEVKNLKKELRTRD 161 >UniRef50_D0ZCI2 Serine phosphatase RsbU, regulator of sigma subunit n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZCI2_EDWTE Length = 421 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 108/229 (47%), Gaps = 10/229 (4%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L+ +LIV+D +R LL + + + A DG AL L ++I D MP M Sbjct: 7 LLADTVLIVDDSPGYRRLLATILARWQYRVIEAQDGEQALACLASHRVHIVISDWEMPLM 66 Query: 65 NGLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 +G L IR + G +++++ ++ D+ + G +D L KP+ +LR + A Sbjct: 67 DGAALCRAIRAGDYGHYIYLILLTIRQSTEDMLAGMAAGADDFLTKPLNQ-GQLRSRLHA 125 Query: 123 C-LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 S+ + L + + + AAA + + L P Q I+ ++ L +A Sbjct: 126 AQRIISLEATLAARNATLAHAYQQIESDLQAAAAMQRNLLPSHDQTINGFHADWLFLPSA 185 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRAL---FNGLL 227 G +L+ L + LAFYC+DV AGH GV AA+L +++ FN L Sbjct: 186 YVSGDLLNYVLLDTHHLAFYCVDV--AGH-GVSAAMLAQSVAQEFNSAL 231 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/116 (32%), Positives = 65/116 (56%), Gaps = 1/116 (0%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 +V K++L+V+DE+ R L + AA+G+ + L F PD++I DI MP Sbjct: 1 MVKKRVLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQDKLMQFKPDVLITDIRMPEK 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 +G LLE I++ G PV++++A KA++LG D ++KP DL+ +++ Sbjct: 61 DGFGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPF-DLDEFLDLI 115 >UniRef50_Q12T20 Two component transcriptional regulator, winged helix family n=11 Tax=Gammaproteobacteria RepID=Q12T20_SHEDO Length = 225 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/101 (36%), Positives = 62/101 (61%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILI+ED+ +S L F++ T A+DG + L L + DL++ D +P+++GL Sbjct: 2 KILIIEDDATTQSYLVEGFAAQNIATDTASDGQEGLHLARHNSYDLIVLDRMLPKLDGLT 61 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 LL +R+ G+ TPVL++SA ++ + K LR G +D + KP Sbjct: 62 LLGALRSSGNSTPVLILSALNHVDERVKGLRAGGDDYMTKP 102 >UniRef50_C7RK06 CheA signal transduction histidine kinase n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RK06_9PROT Length = 1797 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 2/110 (1%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ++IV+D R + + G + A DG+DALE L F PD+M+ DI MPRM+G +L Sbjct: 1676 VMIVDDSLTVRKITSRLLAREGYQIMTAKDGIDALEQLVAFVPDVMLVDIEMPRMDGFEL 1735 Query: 70 LEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 ++R R + PV++I++ A LGV L KP ++ LR Sbjct: 1736 TRNVRADRRLQRVPVIMITSRTAEKHRQYAFELGVNQYLGKPYQEDELLR 1785 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/139 (28%), Positives = 75/139 (53%), Gaps = 6/139 (4%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M +P+ ++LI+ED+ L+ + G + + A+DG + LEL +PD +I DI Sbjct: 1 MKRPI---KVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIM 57 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 +P++NG ++ + IR P+++++ D+ K L +G +D ++KP D N L V Sbjct: 58 LPKLNGWEVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPF-DPNELIARV 116 Query: 121 FACLYPSMFNSRVEEEERL 139 L ++ + E++RL Sbjct: 117 KTVLRRTILSE--SEKDRL 133 >UniRef50_B4VNT0 Adenylate and Guanylate cyclase catalytic domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VNT0_9CYAN Length = 368 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 7/138 (5%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 Q+LIV+DE+ R L+ G + A+DG+D L L +PD+++ D MP M+G Sbjct: 15 QVLIVDDEETQRLLMRRVIEKEGYQILEASDGLDCLRLCKKTSPDIILLDAMMPVMDGFT 74 Query: 69 LLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK---DLNRLREMVFAC 123 + ++ + Q PVL+I+A E+ + +A G D + KP+ L R+R ++ Sbjct: 75 CCQQLKKNPKMSQVPVLMITALEDKKSVNQAFEAGATDYVTKPIHWPVLLQRVRRLILQS 134 Query: 124 -LYPSMFNSRVEEEERLF 140 LY + S+ E ERL Sbjct: 135 QLYIQLIQSQ-ERTERLL 151 >UniRef50_Q3DCX6 DNA-binding response regulator n=7 Tax=Streptococcus agalactiae RepID=Q3DCX6_STRAG Length = 223 Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/103 (33%), Positives = 61/103 (59%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+VED V + ++ + + G + A++G +AL L L+I DI MP M+G + Sbjct: 3 KILVVEDNIVQQKIITTKLTQEGYQFITASNGQEALNCLDTEEVQLIITDIMMPMMDGYQ 62 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 L++ +R+ P++V++A M D+ K LG +D ++KPV+ Sbjct: 63 LIQELRSAAYNVPIIVMTAKSQMEDMTKGFGLGADDYMVKPVQ 105 >UniRef50_Q1INQ1 Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1INQ1_ACIBL Length = 367 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/134 (32%), Positives = 76/134 (56%), Gaps = 6/134 (4%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL-GGFTPDLMICDIAMPRMNGL 67 +IL+V+DE+ R ++ S S+ G T A G+ AL +L G +LM+ D+ M ++G+ Sbjct: 5 RILVVDDEEPIREIVSSMLSNAGYKTQQAGSGLQALAVLESGEEFELMLSDLMMAELDGI 64 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 LLE + R PV++++A +++ A+R G D LLKP + RE + A + + Sbjct: 65 GLLEKTKERYPDMPVVMVTAVHDISVALAAIRNGAYDYLLKPFE-----REQLLAMVRRA 119 Query: 128 MFNSRVEEEERLFR 141 + N R++ E R ++ Sbjct: 120 LENRRLKLENRAYQ 133 >UniRef50_A8ZNT0 Two-component transcriptional regulator/diguanylate cyclase (GGDEF) n=1 Tax=Acaryochloris marina MBIC11017 RepID=A8ZNT0_ACAM1 Length = 792 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 61/101 (60%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+VED+++ L + L LA DG A EL+ F DL++ D+ +PR++G+ Sbjct: 2 RILVVEDDELVAEALQTLLVDLNYAVELATDGQTAAELVEAFEYDLILSDVMLPRLDGVG 61 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 L + +R++G Q P+L+++ ++ D A L G +D ++KP Sbjct: 62 LCQQLRSQGYQIPILLLTGKDSSHDRAIGLDAGADDYVVKP 102 Score = 41.2 bits (95), Expect = 0.055, Method: Compositional matrix adjust. Identities = 29/117 (24%), Positives = 54/117 (46%), Gaps = 9/117 (7%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +I+IV+D+ + + G + + E L PDL++ D+ MP + G+ Sbjct: 489 RIMIVDDDPQILETVAALCKPWGLEVIGLDEPTQFWETLTNSPPDLLLLDVEMPEIGGID 548 Query: 69 LLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKP-------VKDLNRL 116 L +RN + +Q P++ ++A + + G +D + KP V+ LNRL Sbjct: 549 LCRVVRNDIQWEQLPIIFLTAHTEADVVNQVYASGADDFISKPIVGPELVVRILNRL 605 >UniRef50_Q88JD6 DNA-binding response regulator n=6 Tax=Gammaproteobacteria RepID=Q88JD6_PSEPK Length = 220 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 45/125 (36%), Positives = 68/125 (54%), Gaps = 1/125 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+VED+ + G T DGV L L T DL+I D+ +PRM+GL+ Sbjct: 2 RLLLVEDDIALGEGICDGLRQEGYTLDWLRDGVSGLHALQHETFDLVILDLGLPRMDGLE 61 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 LL +R GD PVL+++A + + D L G +D L+KP DLN L+ + A L S+ Sbjct: 62 LLRRLRAGGDSLPVLILTARDALDDRIAGLDAGADDYLVKPF-DLNELKARLRALLRRSV 120 Query: 129 FNSRV 133 ++V Sbjct: 121 GRAKV 125 >UniRef50_A4XHB8 Two component transcriptional regulator, AraC family n=2 Tax=Clostridia RepID=A4XHB8_CALS8 Length = 546 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 3/106 (2%) Query: 9 QILIVEDEQVFRSLLDS---WFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +ILIV+D+ + R + + W A+ G +ALEL+ FTPD++I DI MP M+ Sbjct: 3 KILIVDDDMLIRKGIRNVIRWKDFDCEICAEASTGEEALELIKKFTPDIVITDIRMPNMD 62 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 G++L+E I+ Q +++++A +A++ G D LLKP K Sbjct: 63 GIELIERIKAILPQCKIIILTAYREFEYAQRAIKFGAFDFLLKPTK 108 >UniRef50_UPI0001C31C36 two component transcriptional regulator, winged helix family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31C36 Length = 235 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 59/101 (58%), Gaps = 1/101 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+VEDE R L+ G + A +G++AL LL TPDL++ D+ MP ++G + Sbjct: 5 EVLVVEDEDDVRRLVRVLLERAGHSVSEAGNGIEALRLLKSATPDLIVLDVTMPELDGWQ 64 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 LE IR+ + PVL+++A D + L+ G +D + KP Sbjct: 65 TLERIRDL-TEVPVLMLTARAGELDKVRGLKSGADDYVTKP 104 >UniRef50_B3E8H3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Bacteria RepID=B3E8H3_GEOLS Length = 451 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 43/120 (35%), Positives = 66/120 (55%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+VED+ FRSLL + G V DG AL+ L + DL++ D+ +P +NGL+ Sbjct: 6 RILLVEDDATFRSLLAAILDDEGYELVEREDGKAALKTLQRQSFDLVLSDLRLPGLNGLE 65 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 L + G P ++++A + + A++ GV D L KP+KD LR +V L SM Sbjct: 66 LFRRAQAEGIAPPFVLLTAFGTVEEAVAAMKEGVADFLTKPLKDPATLRVLVRRTLAVSM 125 >UniRef50_C1SIR8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SIR8_9BACT Length = 121 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/103 (33%), Positives = 55/103 (53%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+++D + R + S G A DG+DALE LM+CD+ MPRM+G+ Sbjct: 4 KVLVIDDSDMVRHFHSNILKSAGFDADGAIDGMDALEKSMKTNYALMLCDLNMPRMDGIT 63 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 +E R G +TPV++I+ E + + K G + KPVK Sbjct: 64 FIEEFRKTGKETPVIIITTQEEIENRQKGYESGANLYITKPVK 106 >UniRef50_UPI00016998E7 two-component system sensor protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016998E7 Length = 345 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 41/113 (36%), Positives = 63/113 (55%), Gaps = 6/113 (5%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 PLVG +L+VED V +++ G T V A DG +AL+++G D+++ D MPR Sbjct: 66 PLVG-HVLVVEDNPVNMAVVKKMLQRAGLTPVTAMDGAEALKMVGEENFDVVLMDCQMPR 124 Query: 64 MNGLKLLEHIRNRGDQT-----PVLVISATENMADIAKALRLGVEDVLLKPVK 111 M+G + E IRNR + P++ ++A D + L G++D L KPVK Sbjct: 125 MDGYESTEAIRNREEMNGLSRLPIIAMTANAMAGDRERCLAAGMDDYLAKPVK 177 >UniRef50_C7LX78 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LX78_DESBD Length = 446 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 1/109 (0%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 + IL+V+DE +R L G A DALE + TPD+++ D+ MP +GL Sbjct: 3 RSILVVDDEIRYRELYARVLRDAGFDVHEAGSAADALEFMDRRTPDMVVSDVRMPAESGL 62 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL 116 LL +R + P L+++A ++ + AL+LG D L KPV DL+ L Sbjct: 63 DLLRRVRAEKPELPFLLVTAYADVREAVDALKLGAVDYLAKPV-DLDEL 110 >UniRef50_C6CY25 Two component transcriptional regulator, AraC family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CY25_PAESJ Length = 535 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 63/104 (60%), Gaps = 5/104 (4%) Query: 9 QILIVEDEQV----FRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 +++IVEDE + RS++D W T AA+G +ALEL+ PD++I DI MP M Sbjct: 3 RVMIVEDEFIVRYGIRSMID-WEKVGLEVTGEAANGKEALELIRRDPPDILITDIKMPVM 61 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLK 108 +G++L+E +R+ G V+++S E KA+R GV + ++K Sbjct: 62 DGIQLIEEVRSSGFTMKVIILSNLEEFQYAQKAIRYGVSEYMIK 105 >UniRef50_D2L5L6 Multi-sensor signal transduction histidine kinase n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L5L6_9DELT Length = 519 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 38/117 (32%), Positives = 64/117 (54%), Gaps = 1/117 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+VED+ R + W ++ G + A DG L+++ P ++ D+ +P ++G Sbjct: 7 KILVVEDDADVRQAIAFWLATAGYAVLEATDGRTGLDVIRAEGPQAVLLDLRLPGLDGFG 66 Query: 69 LLEHI-RNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +LE + R G+Q PVLVIS +A + +A R+G D L KP+ + L + A L Sbjct: 67 VLEALGREGGEQPPVLVISGQNEIAGVVQAFRMGAADYLQKPIVSFDLLGHALEAVL 123 >UniRef50_Q251C7 Putative uncharacterized protein n=1 Tax=Desulfitobacterium hafniense Y51 RepID=Q251C7_DESHY Length = 231 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 54/101 (53%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +I++V+DE S L+ + G A DG+ ALEL PDL I D+ +P +NG + Sbjct: 2 KIMLVDDEPSLCSALEIVITRAGYDFYCATDGIAALELFRSKKPDLAILDLMVPWLNGFE 61 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 + E IR P+L++SA ++ D R G +D L KP Sbjct: 62 ICEEIRRTDSHIPILILSAKGDIVDKKMGFRAGADDYLTKP 102 >UniRef50_C7LSX2 Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LSX2_DESBD Length = 364 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 71/132 (53%), Gaps = 4/132 (3%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+++DE++ R ++ + G + A + L + PD++I D+ MP +G ++ Sbjct: 12 VLLIDDERMNRLIVGDYLRDSGYAVLEAESSSEGLRIFDNARPDIVITDLRMPGGDGNQV 71 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 + ++N TPV++IS T ++ + LR G D + KPV++++R++ + A + + Sbjct: 72 VTRLQNVAPDTPVIIISGTASLEEALCTLREGASDFITKPVREMDRIKHAIEAAMKKAHL 131 Query: 130 NSRVEEEERLFR 141 N E RL + Sbjct: 132 N----RENRLVK 139 >UniRef50_D1CG76 Two component transcriptional regulator, winged helix family n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG76_THET1 Length = 243 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/102 (35%), Positives = 59/102 (57%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL V+D+ + L+D + G +AAD AL L TPDL++ D+ +PRM+G L Sbjct: 8 ILAVDDDPLTGKLIDFLLENEGHEVEIAADPSQALRALEQRTPDLILLDVQLPRMDGFTL 67 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 L+HI+ + + PV++++A M D L G +D ++KP + Sbjct: 68 LKHIKKQYPEMPVIMLTARAEMQDKLTGLESGADDYVVKPFE 109 >UniRef50_Q310A6 Histidine kinase n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q310A6_DESDG Length = 647 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 2/112 (1%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 + Q L +L+VED ++ R + +G LA DG++AL L+ + DL+ DI Sbjct: 285 LRQELADTSVLVVEDNKINRQIAKELLEGVGVRVTLAGDGLEALALVENYDFDLIFMDIQ 344 Query: 61 MPRMNGLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 MPRM+GL+ IR Q PV+ ++A D +LR G+ D + KP+ Sbjct: 345 MPRMDGLEACRRIRQLQHKKQPPVVAMTAHALAGDRETSLRAGMNDHITKPI 396 Score = 42.7 bits (99), Expect = 0.020, Method: Compositional matrix adjust. Identities = 64/251 (25%), Positives = 112/251 (44%), Gaps = 46/251 (18%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP--DLMICDIAMP 62 L G ++L+ +D R++L SL LA G +A++L+ +++ D MP Sbjct: 142 LEGTRVLVADDNFTSRAILKEVLESLRFDVTLAESGEEAVDLVQKTAEPFKVVLLDWRMP 201 Query: 63 RMNGLKLLEHIR--NRGDQTPVLVISA---TENMADIAKALRLGVEDVLLKPVKDLNRLR 117 ++GL HIR + + +L+I+A E + +I + ++ VLLKPV R Sbjct: 202 GLDGLACARHIRQLDLPVRPTILIITAYGREEVLGEIPSEI---IDGVLLKPVA-----R 253 Query: 118 EMVFACLYPSM--FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNY 175 ++ + ++ ++SR E+E R+ + +D A+L QEL V+ ++N Sbjct: 254 SLLLNTILDALPEYSSRPEQESRIIQ-----IDT----AQLRQELADTSVLVVEDNKIN- 303 Query: 176 RQL---------VAADKPGLVLDIAALSEN-DLAFYCLDVTRAGHNGVLAALLLRALFNG 225 RQ+ V G L+ AL EN D +D+ +G+ A +R Sbjct: 304 RQIAKELLEGVGVRVTLAGDGLEALALVENYDFDLIFMDIQMPRMDGLEACRRIR----- 358 Query: 226 LLQEQLAHQNQ 236 QL H+ Q Sbjct: 359 ----QLQHKKQ 365 >UniRef50_UPI00016C51FD response regulator receiver domain protein (CheY-like) n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C51FD Length = 406 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/121 (37%), Positives = 69/121 (57%), Gaps = 7/121 (5%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K+IL+VED R +L S G TV AA+G +AL+ + DL++CDI MP ++G Sbjct: 161 KRILVVEDNDANRVMLCRRLGSRGFQTVEAANGREALDAVRRAPFDLVLCDIMMPEVDGY 220 Query: 68 KLLEHIRNRGDQT----PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 ++L + + DQ PV+++SA + A++ + + +G ED L KP D L V AC Sbjct: 221 EVLRQL--KADQNLQSLPVIMVSAIDETAEVVRCIEMGAEDYLHKPY-DPVLLHARVNAC 277 Query: 124 L 124 L Sbjct: 278 L 278 Score = 48.5 bits (114), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 2/104 (1%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +L+VEDEQV R + G T + A G+ A+ L PD+++ D+ +P ++G + Sbjct: 3 HVLLVEDEQVNREMFRRRLERKGYTVLPADTGLGAVALARSERPDVILMDLGLPDIDGWE 62 Query: 69 LLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPV 110 ++ P++V+SA KA G +D KPV Sbjct: 63 ATRRLKADPATAPIPIIVLSAHATFDAKDKAFAAGCQDFETKPV 106 >UniRef50_A0L4R7 Response regulator receiver protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L4R7_MAGSM Length = 373 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 4/106 (3%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 ++ILIVED++ LL+S+ S G +LA DG A+E PDL+I DI +P +G Sbjct: 8 RKILIVEDDETSAWLLESFLRSEGYEVILARDGFAAVERYQSADPDLIIMDILLPGQDGY 67 Query: 68 KLLEHI----RNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 E I RN P++ ++A E+ A++A+ L G +D ++KP Sbjct: 68 AATEQIRAITRNEDSPPPIIFLTAIESDAELARCLDCGGDDFVVKP 113 >UniRef50_UPI0001BCDC24 two component AraC family transcriptional regulator n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCDC24 Length = 261 Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/177 (31%), Positives = 82/177 (46%), Gaps = 21/177 (11%) Query: 8 KQILIVEDEQVFRSLL---DSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 ++ILIVEDE++ R L W S A DG LELL PD+++ DI MPRM Sbjct: 2 RRILIVEDEEIIRQGLVCTIDWLSMDCVVVGDAPDGKAGLELLRRERPDILLTDIRMPRM 61 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +G+++ EH R G ++ +++ KA+ L D LLKPV E A L Sbjct: 62 DGIEMAEHARAEGILPHLVFLTSYAEFGYAKKAIELRAVDYLLKPVD------EKELAAL 115 Query: 125 YPSMF---NSRVEEEERLFR-DWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 + +R EE + R DW ++ A L P V+ + R +YR+ Sbjct: 116 MQRLAGEEQARGAEESPMDRIDWRHYFEDDA--------LNPYVRHAMERIRRDYRE 164 >UniRef50_Q47FN5 Response regulator receiver modulated diguanylate cyclase n=3 Tax=Betaproteobacteria RepID=Q47FN5_DECAR Length = 313 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 64/108 (59%), Gaps = 3/108 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+VED Q + L + GAT++ A +G A++L PDL++ +I +P M+G Sbjct: 2 KILVVEDSQSSLATLTKYVEHFGATSIPAENGEMAIDLFSRNRPDLVLLNILLPDMDGFV 61 Query: 69 LLEHIR---NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDL 113 + +HIR GD P++ +S+ ++ A+I K + G +D L KP+ ++ Sbjct: 62 VAQHIRAMEKPGDWAPIIFLSSLDDDANIEKGIAAGGDDYLHKPISEI 109 >UniRef50_B8H0J1 Two-component receiver domain protein n=2 Tax=Caulobacter vibrioides RepID=B8H0J1_CAUCN Length = 125 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 43/117 (36%), Positives = 63/117 (53%), Gaps = 5/117 (4%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+VED++ R L+ G AADG AL++L G P M+ DI MP M+GL Sbjct: 5 RILLVEDDEAIRDLVTGVLEGAGYEVSTAADGQAALDMLPGVAPHAMVVDINMPGMDGLA 64 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKD---LNRLREMV 120 LL +R + P L+++A + DI +++ LG D + KP + L RL MV Sbjct: 65 LLHAVRRDPAFAEIPALMLTAQTSPEDIRRSMSLGAADFIGKPFEARVLLRRLERMV 121 >UniRef50_A3Z1C2 Sensor protein n=1 Tax=Synechococcus sp. WH 5701 RepID=A3Z1C2_9SYNE Length = 633 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/113 (37%), Positives = 64/113 (56%), Gaps = 4/113 (3%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+ ED V R + F+ LG + A DG +A+ L PDL++ D+ MPR++GL Sbjct: 506 RILVAEDSAVNRRVCALMFAKLGHSVSFAVDGEEAVSLHASLDPDLIVMDVQMPRLDGLG 565 Query: 69 LLEHI-RNRGDQTP--VLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 I RN DQ ++ ++A +AD A+AL G+ D L KP++ L +L E Sbjct: 566 ATRRIRRNSADQQRPWIVALTAGATVADRAEALEAGMNDFLTKPLQ-LTQLSE 617 >UniRef50_Q21NE6 Response regulator receiver n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21NE6_SACD2 Length = 1029 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 2/104 (1%) Query: 11 LIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLL 70 LIV+D R L + S +G A DG DA+ +L P +M+ D+ MPRMNGL+L Sbjct: 914 LIVDDSLSARRTLAQFISDMGMEAYTAKDGFDAINVLKDKKPSIMLVDLEMPRMNGLELT 973 Query: 71 EHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKD 112 H+R+R D PV++I++ A GV+ L KP D Sbjct: 974 AHLRSREDTRNIPVIMITSRTTEKHRTMAKNAGVDTYLNKPWSD 1017 >UniRef50_D1BPS5 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BPS5_VEIPT Length = 224 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/114 (30%), Positives = 66/114 (57%), Gaps = 1/114 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+VEDE++ + + + T +G A++ + + D+++ DI MP ++G+ Sbjct: 2 KILLVEDEEMLNGITAKYLRAENMTVDTCFNGQQAIDYVNTSSYDVIVMDIMMPILDGIS 61 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 L +RN G+ TPVL+++A +++ D +L G +D L+KP DL L ++A Sbjct: 62 ALAQMRNDGNTTPVLLLTAKDSLQDKVTSLNTGADDYLVKPF-DLEELTARIYA 114 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 61/100 (61%), Gaps = 1/100 (1%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+VEDE+ R +L G LAADG++AL++ PDL++ D+ +P ++G ++ Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 ++ IR + + TP++V++A + D L LG +D + KP Sbjct: 65 MKKIRQK-NNTPIIVLTARVDEVDKLLGLELGADDYITKP 103 >UniRef50_C3K4W9 Sensor protein n=1 Tax=Pseudomonas fluorescens SBW25 RepID=C3K4W9_PSEFS Length = 989 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/119 (31%), Positives = 68/119 (57%), Gaps = 1/119 (0%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 P + ++L+ ED V +++L +LGA +A DG AL++ G DL+I DI MPR Sbjct: 750 PCLNVRVLVAEDNPVSQAVLQEQLEALGAQATVARDGEHALQIWGSQPFDLVITDINMPR 809 Query: 64 MNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 +NG L +R +G Q P++ ++A + + L +G+ ++KP+ +N LR+ + + Sbjct: 810 LNGYDLARALREQGVQVPIIGVTANALREEGERCLAVGMNAWVVKPLS-MNMLRQALMS 867 >UniRef50_B5SK07 Sensor protein n=5 Tax=Ralstonia solanacearum RepID=B5SK07_RALSO Length = 1003 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/111 (36%), Positives = 57/111 (51%), Gaps = 6/111 (5%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +G IL+ ED + R LL LG LA DG AL+ L D ++ D MPR+N Sbjct: 739 LGAHILVAEDHPINRELLAKQLRLLGYRVTLAEDGAAALQRLSETRFDALLTDCCMPRLN 798 Query: 66 GLKLLEHIRNRGDQTP------VLVISATENMADIAKALRLGVEDVLLKPV 110 G +L IR R QTP +L I+AT + A+ +G++D +LKP Sbjct: 799 GFELARRIRQRERQTPGGPRLAILAITATTLAEEHARCRAVGMDDCVLKPT 849 >UniRef50_B7G5E0 Diatom response regulator 3 (Fragment) n=2 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7G5E0_PHATR Length = 414 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 5/108 (4%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K+ L+++D +V R +L + S LG T+LA +G++ L L T DL++CD+ MP M+GL Sbjct: 117 KRALVIDDSKVVRKILANALSRLGFETMLAVNGLEGLRALQESTYDLVLCDLLMPVMDGL 176 Query: 68 KLLEHIR-----NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 + R NR Q ++ +SA + DI + L+LG++ KP+ Sbjct: 177 DCVRSYRHWESNNRSTQQHIVAMSAHASEVDIERCLKLGMDCYYSKPI 224 >UniRef50_A6GMM8 Response regulator n=1 Tax=Limnobacter sp. MED105 RepID=A6GMM8_9BURK Length = 1026 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/107 (33%), Positives = 62/107 (57%), Gaps = 2/107 (1%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 VGK I+IV+D + F + ++ S G T A +G +AL L+ PD ++ D MP M+ Sbjct: 448 VGKSIVIVDDSRSFLRIFEAMLHSWGYTVHSAKNGHEALALIEKHQPDFVLTDWDMPGMS 507 Query: 66 GLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 G++L E +R + T +++I+ + D+ +LR+G +D + KPV Sbjct: 508 GIELCEQVRAQKQNAYTYIIMITGYASRDDLLNSLRVGADDFMTKPV 554 Score = 67.0 bits (162), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 80/310 (25%), Positives = 138/310 (44%), Gaps = 19/310 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+D V R+L + G AA G +A+EL+ L++ D MP M G + Sbjct: 12 RILVVDDSVVERNLFVHMVAKWGYPVEFAASGQEAIELVERDRFQLVLADWQMPGMQGTE 71 Query: 69 LLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 L +R + G T ++++SA + + KAL G +DVL KPV D N L + + + Sbjct: 72 LCVALRQLDLGQYTYIILMSAQNDEEFLIKALDAGADDVLTKPV-DGNELEARLQSAVRR 130 Query: 127 SMFNSRV-EEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK-- 183 +R+ + L R D + + A + L + P Q +NY+ L K Sbjct: 131 IELQARLARKTAELVRAHDVIAQDLRAVSGLQRSFLPEAQSPFQG--LNYQWLSVPSKYV 188 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNG------LLQEQLAHQNQR 237 G L + L + FY LDV+ G + ++ L +F + + + QR Sbjct: 189 SGDHLQVFELQRDVYGFYLLDVSGHGIPAAVKSMQLVQMFADRSATSIVFEGRFGSDGQR 248 Query: 238 L-PELGALLKQVNHLLRQANLP-GQFPLLVGYYHRELKNLILVSAGLNAT--LNTGEH-Q 292 L ++ ++N L +Q F ++ G ++ + + L AG + L+ G+ + Sbjct: 249 LVSRPRDVVARLNRLFQQTESDLSYFTMIYGVFNTANRRVSLCQAGHPSPLLLSAGKQAE 308 Query: 293 VQISNGVPLG 302 V S G P+G Sbjct: 309 VLGSGGYPVG 318 >UniRef50_A0YNE5 Sensor protein n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YNE5_9CYAN Length = 1837 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 5/114 (4%) Query: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 Q L G Q+LIVEDE R L GAT + L+ TPD+++ DI MP Sbjct: 1710 QCLQGVQVLIVEDEADTRECLSMMLEQAGATVTAMTSAPEGLKAFMNSTPDILVSDIGMP 1769 Query: 63 RMNGLKLLEHIR----NRGD-QTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 M+G +L++ IR N D Q P + ++A AD KA R G + KPV+ Sbjct: 1770 GMDGYQLIKQIRSLYKNESDKQMPAIALTAYAAEADFKKAYRSGFNQHISKPVE 1823 >UniRef50_C1F1R9 Mutant NtrC-like activator n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F1R9_ACIC5 Length = 495 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/113 (35%), Positives = 68/113 (60%), Gaps = 1/113 (0%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +++LIVEDE + L S+ T A DG++ALE + G+ P +++ D+ MPRM+G+ Sbjct: 25 EKVLIVEDEPHALTGLAELVSAWDYRTETARDGIEALEKVRGWQPAIVVTDLKMPRMDGM 84 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 +LLE + V+V++A ++ +A+++G D L KPV D RLR ++ Sbjct: 85 QLLERLNQMDGSRAVIVLTAQGSIESAVEAMKIGAFDYLQKPV-DSVRLRTIL 136 >UniRef50_A4F8F4 Response regulator, two-component system n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8F4_SACEN Length = 222 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 59/99 (59%) Query: 11 LIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLL 70 ++V+DE RS L S+ G +A+DGV+AL L G D+++ DI +P ++G ++L Sbjct: 1 MVVDDEPGVRSALRRGLSAEGMDVTVASDGVEALRLAGTGAFDVVVLDIMLPGLSGYRVL 60 Query: 71 EHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 E +R TPVL++SA + D A L LG + L+KP Sbjct: 61 ERLRADDVATPVLLLSAKDGEVDQADGLDLGADGYLVKP 99 >UniRef50_C4WQ62 Probable transcriptional regulator ycf27 n=1 Tax=Ochrobactrum intermedium LMG 3301 RepID=C4WQ62_9RHIZ Length = 257 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 62/106 (58%), Gaps = 1/106 (0%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 P+ +LIVEDE +LD++ G TV AADG AL+ +PD+++ D+ +P+ Sbjct: 27 PVDNSLVLIVEDEPEIAQILDAYLVREGYRTVRAADGETALQHHALLSPDIVLLDVRIPK 86 Query: 64 MNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 ++G +L +R + TPV++++A D LRLG +D ++KP Sbjct: 87 LDGFAVLARLRQTKN-TPVIMVTALAEDIDRLSGLRLGADDYVVKP 131 >UniRef50_D1ASU8 Nitrogen assimilation regulatory protein n=5 Tax=Anaplasma RepID=D1ASU8_ANACI Length = 466 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 84/165 (50%), Gaps = 8/165 (4%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM--PRMNG 66 ++LIV+DE R+++ S T ++ DG+ A++L PD+++ DI + ++G Sbjct: 14 EVLIVDDEADLRAMVQDILSDDNYVTNVSHDGLTAIKLAYEREPDVVLLDIWLKGSDIDG 73 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 L +LE +R R PV+VIS N+A K+L +G D + KP + NRL+ +V + Sbjct: 74 LSVLEKLRCRYPHLPVIVISGHGNIATAVKSLHIGAYDYIEKPFTE-NRLKLVVKRAVES 132 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHC 171 E LF D++ + +P ++ L+ + + S C Sbjct: 133 GRLKRENRELRSLFEDYEIVGSSPQ-----IKNLRSTISKAASTC 172 >UniRef50_Q0TRX2 DNA-bindng response regulator, AraC family n=12 Tax=Clostridium RepID=Q0TRX2_CLOP1 Length = 250 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/114 (35%), Positives = 67/114 (58%), Gaps = 3/114 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSS--LGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 I++ +DEQ+ R +L S + A +G +ALEL F PD++I DI MP +NG Sbjct: 3 SIMVADDEQLERRVLTSILKKNVRVKEIIEAKNGKEALELNREFNPDIIIMDIKMPGING 62 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 +K LE I+N +++++A ++ I K L LG D ++KP+K ++L E+V Sbjct: 63 IKALELIKNENPNKEIIMLTAYDDFEFIHKVLVLGGSDYIIKPIKP-DKLMEIV 115 >UniRef50_UPI00017895AE two component transcriptional regulator, AraC family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017895AE Length = 353 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 30/74 (40%), Positives = 46/74 (62%) Query: 37 AADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAK 96 A DGV+ALE+L PD+++ DI MP M+GL+ + +R Q +++S +N + Sbjct: 34 AEDGVEALEMLENSRPDIIVTDICMPEMDGLEFIRRVRESHAQMHFIILSGHDNFEFARQ 93 Query: 97 ALRLGVEDVLLKPV 110 A+R GV D LLKP+ Sbjct: 94 AMRYGVSDFLLKPI 107 >UniRef50_Q7MRH8 Putative uncharacterized protein n=1 Tax=Wolinella succinogenes RepID=Q7MRH8_WOLSU Length = 377 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/106 (38%), Positives = 59/106 (55%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 V +ILIVED+ R L + S+ A DG + L G PD++I DI MP++ Sbjct: 7 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAPDVIITDIRMPKLG 66 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 GL++L+ I+ G + V+VISA M KA+ LGV L KP++ Sbjct: 67 GLEMLDRIKAGGAKPYVIVISAFSEMKYFIKAIELGVHLFLPKPIE 112 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/115 (33%), Positives = 66/115 (57%), Gaps = 1/115 (0%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILIV+DE+ R + + + G + A +ALE + F PDL++ D+ +P +NG++L Sbjct: 7 ILIVDDEETIRLSVREFLDAQGYEAIAAGSCEEALEKMDTFMPDLILLDLRLPNINGVEL 66 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +E I+ + ++V++ ++ + +RLG D L KP K L+RLR +V L Sbjct: 67 IEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFK-LDRLRSVVEKAL 120 >UniRef50_C6E6L0 Response regulator receiver protein n=3 Tax=Geobacter RepID=C6E6L0_GEOSM Length = 292 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 38/110 (34%), Positives = 61/110 (55%), Gaps = 2/110 (1%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 GK IL+VED+Q+ R ++ + G + A DG+DA + P L+I D MP++ G Sbjct: 163 GKTILLVEDDQLSREMVAKILTKHGCSVETAIDGMDAFAKIFALKPKLVITDKVMPKLGG 222 Query: 67 LKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLN 114 + L IRN + PV++++A + +AL G D +LKPVK++ Sbjct: 223 YEFLYAIRNIPEFRYMPVILMTAAATPDEEKEALEKGFFDFVLKPVKEIG 272 >UniRef50_C9RP01 Sensor protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RP01_FIBSS Length = 1329 Score = 69.3 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 4/106 (3%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+VED ++ + L S +S+G T++A +G ALELL DL++ DI MP MNGL Sbjct: 975 KILLVEDNEMNQELAVSLLNSVGLATMVAPNGKKALELLKINAFDLVLMDIQMPVMNGLD 1034 Query: 69 LLEHIRNRGDQ----TPVLVISATENMADIAKALRLGVEDVLLKPV 110 IRNR D+ P++ +SA D L+ G+ + KP+ Sbjct: 1035 ATRAIRNRSDEYFKNVPIIAMSAKAFQKDRDDCLKAGMNSYIAKPI 1080 >UniRef50_B5YI45 Transcriptional activator n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YI45_THEYD Length = 424 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/102 (38%), Positives = 56/102 (54%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K +LI++DE L S LG D L + L+I D+ MP+M+GL Sbjct: 2 KSVLIIDDEPDMGFALKEGMSRLGFDAHYYRDPSQLLSNINFSDFSLIITDVKMPKMDGL 61 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 +LLE IR RG TPV+VI+ N+ D +A++LG D ++KP Sbjct: 62 QLLEEIRKRGIFTPVIVITGYGNVEDAVRAMKLGAVDYIMKP 103 >UniRef50_B3E283 Response regulator receiver protein n=1 Tax=Geobacter lovleyi SZ RepID=B3E283_GEOLS Length = 115 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/104 (34%), Positives = 61/104 (58%), Gaps = 1/104 (0%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 + +LI+ED++V +LL+ S G ++A DGV ALEL P++++ DI +P++NG Sbjct: 4 QTVLIIEDDEVTSALLEMIVSEAGFQALIALDGVSALELYQRHLPEVVLLDINLPQLNGY 63 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 +RN D P +++ T N AD + L+ + L+KP+K Sbjct: 64 SFASLVRNFSDHKPRIIV-VTSNPADYEQHLKELADGCLVKPIK 106 >UniRef50_A0LGG6 Response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LGG6_SYNFM Length = 1139 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/111 (30%), Positives = 65/111 (58%), Gaps = 1/111 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+DE V R + W G +AA G +A+E+LG + L+ D+ MP M+G++ Sbjct: 191 RILVVDDELVVRDSIKEWLDEAGFAVDMAASGAEAVEMLGRQSYGLLFLDVKMPGMDGVE 250 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 +L+ + + P ++++A + +A+++G +D ++KP D+ L EM Sbjct: 251 VLKIAKEMHPELPAVMMTAYATIETAVEAMKVGAKDYIMKPF-DIEALTEM 300 >UniRef50_B3QXR2 Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QXR2_CHLT3 Length = 338 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/111 (32%), Positives = 65/111 (58%), Gaps = 5/111 (4%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILIV+D+++ LL+ S G ++A++GV+ALE + PDL+I D+ MP++NG Sbjct: 10 EILIVDDQEIILRLLEETLKSEGYAVLMASNGVEALEAVEKKKPDLIITDMLMPKLNGCD 69 Query: 69 LLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 ++ ++ D P ++++ + +AL +GV+D L KP NR+ Sbjct: 70 MVSKLKESADTRLIPTIMLTGLFDFEHKVRALEIGVDDFLGKP---FNRIE 117 >UniRef50_UPI00016C4C5C probable response regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4C5C Length = 131 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 1/120 (0%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K IL+V+D++ + + G + A DG + + PDL+I D+ MPRM G Sbjct: 5 KLILVVDDDRELVDAMRAVLERQGYRVIQAHDGHQGKQAIYNQRPDLVILDMMMPRMGGY 64 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 +LEH +++GD P+++++A E A LGV D + KP + RL + V L P Sbjct: 65 PVLEHFKDKGDAPPIIMVTANEGSRHKVYAEYLGVVDYIRKPFA-MERLLDTVNRTLSPK 123 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 48/162 (29%), Positives = 81/162 (50%), Gaps = 3/162 (1%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP-DLMICDI 59 MT+ + ILI +D+ R LL F G T A G + L + P DL+I D+ Sbjct: 1 MTKATEQRHILIADDDPGIRGLLCEVFDEEGYLTEPAEHGGEVLAKMTKKHPYDLLIMDV 60 Query: 60 AMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 MP +GL +LE +R G TPV++++A + +A+++G D ++KP D+ + + Sbjct: 61 RMPGQDGLTILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPF-DVEEVTLV 119 Query: 120 VFACLYPSMFNSRVEE-EERLFRDWDAMVDNPAAAAKLLQEL 160 V S+V E E + F D M+ N A ++ +++ Sbjct: 120 VKRLFDHQQLASKVRELEAKSFDPRDKMIGNSPAMQEIYKQI 161 >UniRef50_B8FZ84 Response regulator receiver protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FZ84_DESHD Length = 118 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 40/111 (36%), Positives = 62/111 (55%), Gaps = 1/111 (0%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+V+D+ R LL F G +A +G +AL +L G+ PDL+I D+ MP MNG+ Sbjct: 4 ILVVDDQMGVRRLLFETFKEEGHLVKMAENGNEALRVLEGYKPDLIIMDMKMPEMNGIDT 63 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 L+ IR V++++A + + +A GV + KP DL LR++V Sbjct: 64 LKEIRTFNQDVQVIMMTAYGDAQTMERAQEQGVRHYISKPF-DLFELRDVV 113 >UniRef50_A0LPJ2 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=A0LPJ2_SYNFM Length = 263 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/125 (32%), Positives = 70/125 (56%), Gaps = 1/125 (0%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + ++L+VED++ L+ + G +A +G EL + D +I D+ +P M+ Sbjct: 30 ISMRVLVVEDDRQITDFLERALTEAGFKIDVAWNGPQGFELALKESYDAIIIDVILPVMD 89 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL++L+ +RNRG TPVL++SA +++D L LG +D L KP +L L V++ + Sbjct: 90 GLEILQKLRNRGILTPVLILSAKGSVSDRVSGLELGGDDYLTKPF-ELAELLARVWSLIR 148 Query: 126 PSMFN 130 S N Sbjct: 149 RSKVN 153 >UniRef50_A4CLA5 Two-component response regulator n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CLA5_9FLAO Length = 125 Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 1/104 (0%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K+IL+ ED+++ SLL G A DG E L D++I DI MP +G+ Sbjct: 4 KKILLAEDDEMLASLLKFRLEKGGYAVSHARDGRQVKEYLESQKADIIISDIMMPYFSGI 63 Query: 68 KLLEHIRNR-GDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 +L+E +RN D TPV+++S N +++ A +G +D + KPV Sbjct: 64 ELVEFLRNELEDSTPVIIMSTAGNESNVLNAFEMGADDFVSKPV 107 >UniRef50_Q00934 Type 4 fimbriae expression regulatory protein pilR n=65 Tax=Proteobacteria RepID=PILR_PSEAE Length = 445 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 71/128 (55%), Gaps = 3/128 (2%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 ++ LIV+DE R LL+ + T A + +A ELL DL + D+ +P +GL Sbjct: 4 QKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGL 63 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 L+++I+ R QTPV +I+A ++ +AL+ G D L KPV DL RLRE+V L Sbjct: 64 DLVQYIQQRHPQTPVAMITAYGSLDTAIQALKAGAFDFLTKPV-DLGRLRELVATAL--R 120 Query: 128 MFNSRVEE 135 + N EE Sbjct: 121 LRNPEAEE 128 >UniRef50_B2J816 Sensor protein n=7 Tax=Bacteria RepID=B2J816_NOSP7 Length = 2370 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 4/111 (3%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 PL G +IL+V+D+ R L GA+ + A + AL L PDL+I DI MP Sbjct: 2244 PLFGLEILVVDDDADMREFLPFMLEEYGASVTVVASAIAALTALSQSQPDLIISDIGMPE 2303 Query: 64 MNGLKLLEHIRN----RGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 M+G L+ IR+ +G P + ++A D +A+ +G + + KPV Sbjct: 2304 MDGYMLMRQIRSLKPEQGGTIPAIALTAYAGEMDYQQAIAVGFQQHISKPV 2354 >UniRef50_Q7MAP6 GGDEF FAMILY PROTEIN n=1 Tax=Wolinella succinogenes RepID=Q7MAP6_WOLSU Length = 698 Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/148 (25%), Positives = 76/148 (51%), Gaps = 9/148 (6%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L VEDE+ R ++ LA DG + E + PD++I DI MP +NGL + Sbjct: 16 VLFVEDEEDVREAFVNFLKRRFKEVYLAKDGKEGFEAFQKYAPDVIITDIIMPELNGLAM 75 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 I+ P++V++A +++ + +A+ +G++ ++KP+ D +++ + ++F Sbjct: 76 SAMIKQIEPDAPIIVVTAHDDVNLLVEAIGIGIDGYVMKPIND-----KLLVQTIKKALF 130 Query: 130 NSRVEEEERLFRDWDAMV----DNPAAA 153 R + ++ ++ D M+ DN A Sbjct: 131 GLRYQRAKKDIQEKDTMISVVADNSPAG 158 >UniRef50_B0NHY9 Putative uncharacterized protein n=2 Tax=Clostridium RepID=B0NHY9_EUBSP Length = 507 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 38/106 (35%), Positives = 58/106 (54%), Gaps = 3/106 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVL---AADGVDALELLGGFTPDLMICDIAMPRMN 65 +I ++EDE R + + L A +G LEL+ PDL+I DI MP M+ Sbjct: 2 RIAVIEDEAPIREGMSKILKKINENYELVGKAENGKKGLELIRKEKPDLVILDIRMPDMD 61 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 GL +L +R G + +V+SA + A +A+ LG+E+ LLKP+K Sbjct: 62 GLTMLSIVREEGIECKAIVLSAYSDFAYAQRAIELGIENYLLKPIK 107 >UniRef50_A7NFA3 Response regulator receiver protein n=2 Tax=Roseiflexus RepID=A7NFA3_ROSCS Length = 263 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 80/159 (50%), Gaps = 3/159 (1%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 ++ I++V+D+ +L+ SLG TV DG+ AL+ + PDL++ D+ MP M Sbjct: 3 IMSATIMVVDDDPAISTLISHQLRSLGYRTVCLRDGLQALQQMAIIQPDLVLLDVMMPHM 62 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +G + IR + P+++++A + AD+ L G +D + KP + + +L + A L Sbjct: 63 SGWDICRQIRA-CSEAPIILLTAKDADADVINGLNAGADDYVTKPYR-IAQLHARIEAAL 120 Query: 125 YPSMFNSRVEEEERLFRDWD-AMVDNPAAAAKLLQELQP 162 S+ +R R+ D + + PA +A E P Sbjct: 121 RRSVQRTRPRPAARVGSASDGSRLSPPAPSAPQTLETAP 159 >UniRef50_C3XEB9 Two-component system response regulator protein n=1 Tax=Helicobacter bilis ATCC 43879 RepID=C3XEB9_9HELI Length = 236 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 76/163 (46%), Gaps = 11/163 (6%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL ED+ R L S ++A DG++A E+ D+++ DI MPR +G+KL Sbjct: 16 ILYAEDDYTARQTLASILEDYFGNVMVAKDGLEAWEIFQANHIDIVLTDIVMPRFDGIKL 75 Query: 70 LEHIR-NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 + IR N P+++ISA +A++LG LLKP+K ++ L + + + P Sbjct: 76 MRQIRYNAKKDIPIVLISALTETHYFLEAIKLGCNGYLLKPIK-IDELTDTLHNAVLPFA 134 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHC 171 N +E + +L + + VQ + +HC Sbjct: 135 QNKIIEMQNQLLLALNTLFGGKKVEI---------VQYLFTHC 168 >UniRef50_Q0F1Y1 Probable two-component hybrid sensor and regulator n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F1Y1_9PROT Length = 125 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 55/108 (50%) Query: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 +PL GK+I IV+D L + + GA G LE + PDL++ DI MP Sbjct: 2 KPLSGKKIAIVDDNDSILMLFSALLDAHGALVETTNSGEIFLEHISDMAPDLILLDIQMP 61 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 M+G ++LE IR G + PV+ ++A D K L G D + KPV Sbjct: 62 DMDGYQVLEKIRRTGSEIPVVALTAHAMSGDREKILERGFSDYIAKPV 109 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/101 (32%), Positives = 60/101 (59%), Gaps = 1/101 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+DE+ R +L ++ + +A+DG +AL + F PDL+I D+ +P ++G + Sbjct: 4 KILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGEE 63 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 + + IR + QTP+L+++A D G +D L+KP Sbjct: 64 VCQKIR-QDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKP 103 >UniRef50_A8V332 DIGUANYLATE CYCLASE n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8V332_9AQUI Length = 274 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 67/112 (59%), Gaps = 9/112 (8%) Query: 9 QILIVEDEQVFRS----LLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 ++L VED R LL +F ++ + A++G + LEL PDL+I DI MP M Sbjct: 12 KVLYVEDSPEVRQSTLLLLKEFFDNI----ITASNGKEGLELYEKGKPDLIITDINMPEM 67 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL 116 +G+++++ +R + P+++ SA + + ++++LGV+ +LKPV DLN+ Sbjct: 68 SGIEMIKELRKKDKDIPIIITSAHSELEFLLESIKLGVDGYILKPV-DLNQF 118 >UniRef50_A3Y9W5 DNA-binding response regulator n=1 Tax=Marinomonas sp. MED121 RepID=A3Y9W5_9GAMM Length = 244 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 37/111 (33%), Positives = 62/111 (55%), Gaps = 1/111 (0%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 +T + + IL+V+D+ + LL + + G LA++G AL L PDL++ DI Sbjct: 12 LTGSEMSETILVVDDKSNVQQLLSEFLTGHGYQVRLASNGKAALLALEERVPDLILLDIM 71 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111 MP M+G + +R D PV++++A ++ D+ K LG +D L+KP K Sbjct: 72 MPEMDGYGFIHTMRQTHD-LPVIMVTAKQHEGDLIKGFELGADDYLIKPFK 121 >UniRef50_D0M892 Response regulator n=24 Tax=Vibrionales RepID=D0M892_VIBSE Length = 319 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 1/106 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+D Q+ R L LG G++AL F P+L++ DI+MP MNG + Sbjct: 9 RILLVDDVQLDRMQLAIRLKQLGHIVKAVGSGLEALNTYESFDPELVLLDISMPDMNGFE 68 Query: 69 LLEHIRNR-GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDL 113 + HIR D P++ +S+ E IAKA+ G +D L+KPV L Sbjct: 69 VSLHIRETFPDWIPIIFLSSHEEPEMIAKAIEAGGDDYLIKPVDKL 114 >UniRef50_Q8YTJ1 Two-component response regulator n=3 Tax=Nostocaceae RepID=Q8YTJ1_ANASP Length = 140 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 44/129 (34%), Positives = 70/129 (54%), Gaps = 10/129 (7%) Query: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 QPL K+ILIVED + R LL + S G +DG + + F PDL++ D+ +P Sbjct: 15 QPL--KRILIVEDNDINRMLLSDYLSYSGYHVQSLSDGSIFFKTIENFQPDLILLDLKLP 72 Query: 63 RMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL---- 116 ++G LL+ I+ + D + PV+V+S D +A++LG +KP+ +LN L Sbjct: 73 DVDGYYLLKQIQQQQDFARIPVIVVSGFAFKVDQERAIKLGARGYFVKPI-NLNALLIKI 131 Query: 117 -REMVFACL 124 E+V C+ Sbjct: 132 SEELVVNCV 140 >UniRef50_C6BRJ1 Sensor protein n=4 Tax=Desulfovibrionales RepID=C6BRJ1_DESAD Length = 656 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 35/104 (33%), Positives = 60/104 (57%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +I++V+DE+ R L G T A +GV+AL+LL F PD+++ DI MPRM+G+ Sbjct: 12 KIMLVDDEEGLRRFLGLTLMDFGYTVETAENGVEALKLLENFHPDIIVTDIKMPRMDGID 71 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD 112 LL+ I+ V++++ ++ ++L+ D + KPV D Sbjct: 72 LLKAIKEDHPHIEVIMLTGHGDLDLAIESLKNDAADFITKPVDD 115 >UniRef50_D0RPA8 Regulatory components of sensory transduction system n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPA8_9RICK Length = 536 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 70/281 (24%), Positives = 126/281 (44%), Gaps = 29/281 (10%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L+ +ILIV+D + +++ G T+ DGV+A+ L D ++ D+ MPR Sbjct: 170 LITGKILIVDDNKSNCEMIERQLQREGHKTMTCFDGVEAINELNKSDYDTVLLDVLMPRK 229 Query: 65 NGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 NG ++L ++ + PV++IS + I + + GV++ L KP+ ++ A Sbjct: 230 NGYEVLMEMKQSFKLKDIPVIMISGFKEEDTIVRCIESGVDEYLTKPINST-----LLKA 284 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 +Y S+ E + FRD + + AA + + L P + + + A Sbjct: 285 KIYSSL-------ERKKFRDREKH--DLQVAADVQKSLIPSEAYFPDNFYAS--NIAAKG 333 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAG-HNGVLAALLLRALFNGLLQEQLAHQNQRLPEL 241 G D + + AF DV+ G H G+L A ALF L + + + Sbjct: 334 VSGDFYDCIDIDSDRYAFILADVSGKGMHAGILMA-KTSALFRSLTKIE--------KNI 384 Query: 242 GALLKQVNHLLRQANLPGQFPLLV-GYYHRELKNLILVSAG 281 + +VN L + + G F LV G Y++++K + ++AG Sbjct: 385 QKIAWRVNKELCETSSQGMFVTLVMGIYYKKIKAIEFINAG 425 >UniRef50_A0LFY0 Response regulator receiver protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LFY0_SYNFM Length = 133 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 35/101 (34%), Positives = 59/101 (58%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+++DE +F L G A DG LELL D+++ D+ MP M+GL Sbjct: 6 RVLLIDDEVLFTESLLKVLRRRGMAVRTAPDGPTGLELLSKEESDVIVLDVRMPGMDGLA 65 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 + IR TPV+++S +M ++++ALR+G +++LLKP Sbjct: 66 TFKAIRELDPVTPVIILSGNIDMKEVSEALRMGCDEILLKP 106 >UniRef50_A4SPH4 Sensor protein n=2 Tax=Aeromonas RepID=A4SPH4_AERS4 Length = 698 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/129 (31%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 P+ +L+VED V + ++ L +AA+G++AL + PDL++ D+ MP+ Sbjct: 571 PIQDLDVLVVEDSPVNQLVVSLMLQKLVTRVRVAANGLEALAQVAEQKPDLILMDMRMPQ 630 Query: 64 MNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 M+GL+ +R G + P++ ++A D A+ L G++D L KP+ L RLRE + Sbjct: 631 MDGLEATRRLRELGCKMPIVALTANAMAEDRARCLAQGMDDFLAKPIS-LMRLRECLQRY 689 Query: 124 LYPSMFNSR 132 +P + + R Sbjct: 690 FHPELPDRR 698 >UniRef50_A6CEY2 Sensor protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CEY2_9PLAN Length = 1780 Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/117 (34%), Positives = 64/117 (54%), Gaps = 6/117 (5%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL-----GGFTPDLMICDIAMPR 63 ++LIV+D++ R L G T A DG+ A+EL+ G T DL++ D+ MPR Sbjct: 1655 RVLIVDDQRDVRHLTHLLLQRAGIETEFAEDGIQAVELIENQLQNGLTVDLILLDMQMPR 1714 Query: 64 MNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 M+G + +R G + ++ ++A D+ + L LG +D L KP+ D N L EM+ Sbjct: 1715 MDGYQTAARLREIGFRRAIIALTADAMQGDMNRCLELGCDDYLSKPI-DSNELLEMI 1770 >UniRef50_C6LGW7 DNA-binding response regulator n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LGW7_9FIRM Length = 504 Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 40/104 (38%), Positives = 59/104 (56%), Gaps = 2/104 (1%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVL--AADGVDALELLGGFTPDLMICDIAMPRMNG 66 +ILIVEDE R+ + S+ A T++ A +G + LEL+ PDL+I DI MP M+G Sbjct: 2 RILIVEDEIKIRTGMSKLISAHTAHTIVGEAKNGKEGLELILRLHPDLVISDIRMPVMDG 61 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 L++ E G + +++S KALR G +D LLKP+ Sbjct: 62 LEMQEAANRAGVKCHFIILSGYSEFEYAQKALRYGADDYLLKPL 105 >UniRef50_Q8ES65 Hypothetical conserved protein n=1 Tax=Oceanobacillus iheyensis RepID=Q8ES65_OCEIH Length = 517 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 43/116 (37%), Positives = 64/116 (55%), Gaps = 5/116 (4%) Query: 9 QILIVEDEQVFRSLLDS---WFSSLGATTVLAADGVDALELLGGFTP-DLMICDIAMPRM 64 +ILIV+DE + R L W +A DG+DA+ + G DL++ D+ MP M Sbjct: 5 RILIVDDEPIIRLGLQQTIPWEKYQIEKVEIACDGLDAIRKIDGLGGIDLVLSDVRMPNM 64 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 +GL+L ++ QT ++IS + A KA++ GV+D LLKPV D+N L V Sbjct: 65 DGLQLASYLHKNHPQTKTMLISGYDEFAYAKKAIQSGVKDYLLKPV-DINELESKV 119 >UniRef50_C0CVY3 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CVY3_9CLOT Length = 529 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 37/106 (34%), Positives = 61/106 (57%), Gaps = 5/106 (4%) Query: 9 QILIVEDEQV----FRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 +ILI +DE + + +++ F S +A +G A+E+ F PD+ + DI MP + Sbjct: 3 KILIADDEGIVTDSLQYIIEKNFGS-ECQVAIAKNGRQAIEIAESFQPDMALLDIQMPGI 61 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 NGLK +E IR + + L+++A +N +ALRLG D L+KP+ Sbjct: 62 NGLKAMEEIRAQNPRVKTLILTAYDNFDYAKEALRLGAVDYLMKPI 107 >UniRef50_A7C7C3 DNA-binding response regulator n=1 Tax=Beggiatoa sp. PS RepID=A7C7C3_9GAMM Length = 121 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 35/113 (30%), Positives = 68/113 (60%), Gaps = 3/113 (2%) Query: 11 LIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLL 70 +I ED R+L++++ G T + A++G +ALEL P+L++ D+ MP MNG + Sbjct: 1 MIAEDNLDLRTLMETYLEQGGYTIISASNGEEALELALQTQPNLILMDMQMPVMNGYEAA 60 Query: 71 EHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD---LNRLREMV 120 + +R + P++ +S + + D AL+LG +D ++KP+ LNR+++++ Sbjct: 61 QQLREQHFTNPIIALSGSIIIQDRNYALKLGCDDYIVKPISPDDLLNRVKKIL 113 >UniRef50_C7PE49 Two component transcriptional regulator, winged helix family n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PE49_CHIPD Length = 230 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/101 (33%), Positives = 56/101 (55%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+VEDE V ++ + G A +G E F P+L + DI MPR +GL Sbjct: 5 KLLLVEDEIVLAGVVKETLEANGFQISHAENGQQGWEQYLSFRPELCVVDIMMPRKDGLS 64 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKP 109 L++ IR+ +QTP++ ++A D+ K L+ G +D + KP Sbjct: 65 LVKDIRSVDEQTPIIFLTAKSETQDVIKGLQTGADDYIKKP 105 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AEV2 Protein hnr n=144 Tax=Enterobacteriaceae RepID=H... 447 e-124 UniRef50_D0ZH67 Response regulator receiver protein n=20 Tax=Ent... 363 6e-99 UniRef50_D1NYI5 Protein hnr n=5 Tax=Enterobacteriaceae RepID=D1N... 321 2e-86 UniRef50_B4EXS4 Response regulator n=3 Tax=Proteus RepID=B4EXS4_... 318 2e-85 UniRef50_Q48KH7 Response regulator n=23 Tax=Pseudomonadaceae Rep... 300 6e-80 UniRef50_Q21LQ5 Response regulator receiver n=1 Tax=Saccharophag... 296 7e-79 UniRef50_A4BEJ2 Probable two-component response regulator n=1 Ta... 284 3e-75 UniRef50_Q1N0N5 Response regulator n=1 Tax=Bermanella marisrubri... 279 8e-74 UniRef50_C5BR05 Response regulator receiver domain protein n=1 T... 271 2e-71 UniRef50_B1XIW8 Two-component response regulator (RsbV-like) n=1... 269 8e-71 UniRef50_Q1ZRM9 Hypothetical response regulator n=5 Tax=Photobac... 269 8e-71 UniRef50_Q8YUQ5 Two-component response regulator n=28 Tax=Cyanob... 267 5e-70 UniRef50_A0YCS2 Probable two-component response regulator n=1 Ta... 264 4e-69 UniRef50_B7JXS3 Response regulator receiver modulated serine pho... 259 1e-67 UniRef50_B3PDM6 Response regulator n=1 Tax=Cellvibrio japonicus ... 257 4e-67 UniRef50_B5XRS9 Response regulator n=9 Tax=Enterobacteriaceae Re... 252 1e-65 UniRef50_Q7MIU6 Response regulator n=56 Tax=Vibrionales RepID=Q7... 250 4e-65 UniRef50_A0KNX4 Response regulator receiver domain n=2 Tax=Aerom... 246 9e-64 UniRef50_Q1NPP0 Response regulator receiver n=1 Tax=delta proteo... 246 1e-63 UniRef50_D0IC36 Response regulator n=1 Tax=Grimontia hollisae CI... 245 1e-63 UniRef50_A6GMM8 Response regulator n=1 Tax=Limnobacter sp. MED10... 245 1e-63 UniRef50_B5JB24 Stage II sporulation protein E n=3 Tax=Rhodobact... 245 2e-63 UniRef50_A1U0P5 Response regulator receiver protein n=4 Tax=Gamm... 242 2e-62 UniRef50_Q2LXY9 Response regulator receiver domain and a sigma f... 240 5e-62 UniRef50_D0ZCI2 Serine phosphatase RsbU, regulator of sigma subu... 239 8e-62 UniRef50_B5FFM8 Hnr protein n=3 Tax=Aliivibrio RepID=B5FFM8_VIBFM 237 5e-61 UniRef50_B0SE00 Sensor protein n=2 Tax=Leptospira biflexa serova... 236 7e-61 UniRef50_Q1GCJ7 Phosphoserine phosphatase rsbU n=15 Tax=Rhodobac... 231 3e-59 UniRef50_C4LC82 Response regulator receiver protein n=1 Tax=Tolu... 227 5e-58 UniRef50_C5CE55 Response regulator receiver modulated serine pho... 223 9e-57 UniRef50_A8GZ93 Response regulator receiver modulated serine pho... 219 9e-56 UniRef50_A4U5H4 Two-component response regulator n=1 Tax=Magneto... 217 3e-55 UniRef50_A5UZS1 Response regulator receiver protein n=3 Tax=Bact... 216 9e-55 UniRef50_Q2W3W2 Serine phosphatase RsbU n=2 Tax=Magnetospirillum... 215 2e-54 UniRef50_Q07SD0 Response regulator receiver modulated serine pho... 214 3e-54 UniRef50_D0RPA8 Regulatory components of sensory transduction sy... 212 2e-53 UniRef50_UPI00016C38B1 response regulator n=1 Tax=Gemmata obscur... 209 1e-52 UniRef50_A3WMP1 Response regulator of sigma subunit, serine phos... 208 2e-52 UniRef50_Q2W8A5 Serine phosphatase RsbU regulator sigma subunit ... 205 1e-51 UniRef50_B8GB99 Response regulator receiver modulated diguanylat... 202 2e-50 UniRef50_Q12BT3 Anti-sigma-factor antagonist (STAS) domain prote... 201 3e-50 UniRef50_B1ZXR5 Response regulator receiver modulated serine pho... 201 3e-50 UniRef50_Q12PI4 Response regulator receiver protein n=22 Tax=She... 195 2e-48 UniRef50_Q2SBW1 Response regulator containing a CheY-like receiv... 191 3e-47 UniRef50_A4U2R5 Stage II sporulation E n=1 Tax=Magnetospirillum ... 190 7e-47 UniRef50_C6BT74 Signal transduction histidine kinase n=1 Tax=Des... 188 3e-46 UniRef50_Q21IP0 Stage II sporulation E n=1 Tax=Saccharophagus de... 182 2e-44 UniRef50_C0QLH6 Sensor protein n=2 Tax=Deltaproteobacteria RepID... 176 1e-42 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 172 2e-41 UniRef50_B3E9J8 Response regulator receiver protein n=1 Tax=Geob... 168 2e-40 UniRef50_A0YTY5 Sensor protein n=6 Tax=Bacteria RepID=A0YTY5_9CYAN 168 2e-40 UniRef50_B8FJD4 Sensor protein n=1 Tax=Desulfatibacillum alkeniv... 167 4e-40 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 166 1e-39 UniRef50_C0QLH7 Sensor protein n=1 Tax=Desulfobacterium autotrop... 165 2e-39 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 165 2e-39 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 164 4e-39 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 164 5e-39 UniRef50_Q10XK2 Adenylate/guanylate cyclase n=4 Tax=Bacteria Rep... 164 5e-39 UniRef50_B8DLW6 Response regulator receiver modulated diguanylat... 164 5e-39 UniRef50_A9AW15 Adenylate/guanylate cyclase n=2 Tax=Bacteria Rep... 163 7e-39 UniRef50_A0L4R7 Response regulator receiver protein n=1 Tax=Magn... 163 1e-38 UniRef50_B3E861 Two component, sigma54 specific, transcriptional... 162 1e-38 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 162 2e-38 UniRef50_B8FI60 Putative two component, sigma54 specific, transc... 162 2e-38 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 161 3e-38 UniRef50_C7LPI5 Sensor protein n=1 Tax=Desulfomicrobium baculatu... 160 5e-38 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 160 5e-38 UniRef50_B8HVV8 Response regulator receiver protein n=1 Tax=Cyan... 160 6e-38 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 160 7e-38 UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID... 160 8e-38 UniRef50_Q1Q5K2 Similar to two component response regulator n=1 ... 160 1e-37 UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional... 159 1e-37 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 159 1e-37 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 159 2e-37 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 158 2e-37 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 158 2e-37 UniRef50_B8FKA0 Sensor protein n=1 Tax=Desulfatibacillum alkeniv... 158 3e-37 UniRef50_C6MU29 Response regulator receiver modulated diguanylat... 158 3e-37 UniRef50_C6C248 Response regulator receiver modulated metal depe... 158 3e-37 UniRef50_C9YGM9 Putative uncharacterized protein n=1 Tax=Curviba... 157 4e-37 UniRef50_A9AWW6 Sensor protein n=1 Tax=Herpetosiphon aurantiacus... 157 4e-37 UniRef50_D0E8E5 Putative adenylate/guanylate cyclase n=1 Tax=Lyn... 157 5e-37 UniRef50_C0QLH4 Two-component response regulator n=1 Tax=Desulfo... 157 5e-37 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 157 6e-37 UniRef50_D1B9J7 Two component transcriptional regulator, winged ... 157 6e-37 UniRef50_C6BRJ1 Sensor protein n=4 Tax=Desulfovibrionales RepID=... 156 7e-37 UniRef50_Q30VN8 Putative PAS/PAC sensor protein n=1 Tax=Desulfov... 156 9e-37 UniRef50_D1B7S7 Two component transcriptional regulator, winged ... 156 1e-36 UniRef50_B8G179 Two component transcriptional regulator, winged ... 156 1e-36 UniRef50_B8FJD3 Sensor protein n=1 Tax=Desulfatibacillum alkeniv... 156 1e-36 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 155 2e-36 UniRef50_Q1Q5K3 Sensor protein n=1 Tax=Candidatus Kuenenia stutt... 155 2e-36 UniRef50_B0K8A6 Response regulator receiver modulated diguanylat... 155 2e-36 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 155 2e-36 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 155 2e-36 UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Ta... 155 2e-36 UniRef50_B8DJD4 Response regulator receiver modulated metal depe... 155 3e-36 UniRef50_Q0AXB8 Sensor protein n=1 Tax=Syntrophomonas wolfei sub... 155 3e-36 UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Breviba... 155 3e-36 UniRef50_B1JFX2 Two component transcriptional regulator, winged ... 155 3e-36 UniRef50_A0YP69 Hybrid signal transduction histidine kinase and ... 154 3e-36 UniRef50_B0AAH6 Putative uncharacterized protein n=1 Tax=Clostri... 154 4e-36 UniRef50_C1TKX4 Diguanylate cyclase (GGDEF) domain-containing pr... 154 4e-36 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 154 4e-36 UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulato... 154 5e-36 UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=C... 154 5e-36 UniRef50_B4W013 PAS fold family n=2 Tax=Bacteria RepID=B4W013_9CYAN 154 6e-36 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 153 6e-36 UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional... 153 6e-36 Sequences not found previously or not previously below threshold: UniRef50_B0TIH1 Response regulator receiver modulated serine pho... 235 1e-60 UniRef50_UPI0000E87E96 Response regulator receiver (CheY) modula... 228 2e-58 UniRef50_B8F901 Response regulator receiver modulated serine pho... 228 2e-58 UniRef50_B9M3D6 Response regulator receiver modulated serine pho... 220 5e-56 UniRef50_D0MCI0 Serine phosphatase RsbU regulator of sigma subun... 218 2e-55 UniRef50_C0QDZ1 Putative chemotaxis response regulator n=1 Tax=D... 218 2e-55 UniRef50_Q608Q0 Response regulator n=1 Tax=Methylococcus capsula... 218 2e-55 UniRef50_B8G3T7 Response regulator receiver modulated serine pho... 216 8e-55 UniRef50_C4XP67 Response regulator receiver protein n=1 Tax=Desu... 214 3e-54 UniRef50_A1WTI7 Response regulator receiver protein n=1 Tax=Halo... 213 5e-54 UniRef50_B6AT92 Response regulator n=1 Tax=Rhodobacterales bacte... 213 1e-53 UniRef50_C4XPV8 Response regulator receiver protein n=1 Tax=Desu... 212 1e-53 UniRef50_A8FXH7 Response regulator receiver modulated serine pho... 209 1e-52 UniRef50_A0KWS5 Response regulator receiver modulated serine pho... 208 2e-52 UniRef50_Q1IMF3 Response regulator receiver modulated serine pho... 206 1e-51 UniRef50_Q1NTC5 Response regulator receiver n=3 Tax=delta proteo... 205 2e-51 UniRef50_C0GPF4 Response regulator receiver modulated serine pho... 205 2e-51 UniRef50_B0TN95 Response regulator receiver modulated serine pho... 205 3e-51 UniRef50_Q16D14 Response regulator n=7 Tax=Rhodobacteraceae RepI... 204 3e-51 UniRef50_A3PNQ6 Response regulator receiver protein n=2 Tax=Rhod... 203 9e-51 UniRef50_A8LPF3 Response regulator n=2 Tax=Rhodobacteraceae RepI... 200 6e-50 UniRef50_C4L3A8 Response regulator receiver modulated serine pho... 198 3e-49 UniRef50_B8CL69 Serine phosphatase RsbU, regulator of sigma subu... 198 3e-49 UniRef50_A3JMA6 Response regulator n=2 Tax=Rhodobacterales RepID... 197 5e-49 UniRef50_Q310X6 Response regulator receiver (CheY-like) modulate... 196 7e-49 UniRef50_C6C148 Response regulator receiver protein n=1 Tax=Desu... 196 8e-49 UniRef50_A4WVX0 Response regulator receiver protein n=5 Tax=Rhod... 194 5e-48 UniRef50_C0GT23 Response regulator receiver modulated serine pho... 194 5e-48 UniRef50_A0LDM2 Response regulator receiver protein n=1 Tax=Magn... 193 8e-48 UniRef50_A1AZB3 Response regulator receiver protein n=1 Tax=Para... 190 5e-47 UniRef50_Q0AT15 Response regulator receiver modulated serine pho... 190 6e-47 UniRef50_C0QFH6 Putative two-component response regulator receiv... 189 1e-46 UniRef50_C6BU34 Response regulator receiver modulated serine pho... 189 1e-46 UniRef50_Q01YK8 Response regulator receiver modulated serine pho... 188 2e-46 UniRef50_Q64S15 Sigma factor SigB regulation protein RsbU n=5 Ta... 188 2e-46 UniRef50_D1R4M5 Putative uncharacterized protein n=1 Tax=Parachl... 188 3e-46 UniRef50_D0MFG2 Response regulator receiver modulated serine pho... 187 4e-46 UniRef50_B4RXD7 Putative response regulator n=3 Tax=Alteromonas ... 186 7e-46 UniRef50_D2L926 Response regulator receiver modulated serine pho... 186 1e-45 UniRef50_P74139 Regulatory components of sensory transduction sy... 186 1e-45 UniRef50_B4D1A0 Response regulator receiver modulated serine pho... 186 1e-45 UniRef50_B7GKR0 Response regulator with PP2C-type protein phosph... 185 2e-45 UniRef50_A3DCZ0 Response regulator receiver protein n=3 Tax=Clos... 185 3e-45 UniRef50_A1WZ09 Response regulator receiver protein n=1 Tax=Halo... 183 6e-45 UniRef50_C6J6U9 Phosphoserine phosphatase n=2 Tax=Bacillales Rep... 183 6e-45 UniRef50_B9XP30 Response regulator receiver modulated serine pho... 183 7e-45 UniRef50_C4XQQ3 Response regulator receiver protein n=1 Tax=Desu... 183 7e-45 UniRef50_Q1N2W0 Response regulator containing a CheY-like receiv... 183 7e-45 UniRef50_A0Z812 Response regulator n=4 Tax=unclassified Gammapro... 183 7e-45 UniRef50_B3PEZ3 Response regulator n=3 Tax=Gammaproteobacteria R... 182 1e-44 UniRef50_A4XW58 Response regulator receiver protein n=3 Tax=Gamm... 181 2e-44 UniRef50_Q1N5B1 Putative response regulator n=1 Tax=Bermanella m... 181 4e-44 UniRef50_Q2W139 Chemotaxis response regulator protein-glutamate ... 180 6e-44 UniRef50_A0K1U5 Response regulator receiver protein n=3 Tax=Arth... 180 8e-44 UniRef50_C7LV69 Response regulator receiver protein n=2 Tax=Desu... 179 1e-43 UniRef50_B7RZ17 Stage II sporulation protein E n=1 Tax=marine ga... 178 3e-43 UniRef50_C5S8G9 Response regulator receiver protein n=1 Tax=Allo... 177 4e-43 UniRef50_Q7NUQ3 Probable two-component response regulator n=1 Ta... 177 5e-43 UniRef50_Q7NSC1 Probable two-component response regulator n=1 Ta... 176 7e-43 UniRef50_Q28WC4 Response regulator receiver (CheY-like) modulate... 176 8e-43 UniRef50_B7S1F6 Stage II sporulation protein E n=1 Tax=marine ga... 176 1e-42 UniRef50_C1DQE9 Response regulator n=19 Tax=Pseudomonadaceae Rep... 176 1e-42 UniRef50_Q60AL6 Response regulator n=1 Tax=Methylococcus capsula... 176 1e-42 UniRef50_C8X119 Response regulator receiver modulated serine pho... 175 1e-42 UniRef50_B1HNT1 Phosphoserine phosphatase rsbP n=74 Tax=Bacillal... 175 2e-42 UniRef50_Q3IED7 Putative response regulator n=3 Tax=Alteromonada... 171 3e-41 UniRef50_C6CXV6 Response regulator receiver modulated serine pho... 171 4e-41 UniRef50_A0LDH6 Response regulator receiver protein n=1 Tax=Magn... 171 4e-41 UniRef50_Q2BJS2 Sensor histidine kinase/response regulator n=1 T... 170 5e-41 UniRef50_C5V035 Response regulator receiver protein n=1 Tax=Gall... 168 2e-40 UniRef50_Q04UP8 Serine phosphatase, regulator of sigma subunit n... 168 2e-40 UniRef50_Q15VH2 Response regulator receiver protein n=1 Tax=Pseu... 168 3e-40 UniRef50_UPI0001699C5B response regulator receiver protein n=1 T... 167 6e-40 UniRef50_B5EE19 Response regulator receiver modulated serine pho... 166 1e-39 UniRef50_Q0RR80 Putative regulatory protein n=1 Tax=Frankia alni... 165 2e-39 UniRef50_A8ZSN7 Response regulator receiver protein n=1 Tax=Desu... 165 2e-39 UniRef50_Q2SPR3 Serine phosphatase RsbU, regulator of sigma subu... 165 3e-39 UniRef50_A3WN77 Response regulator of sigma subunit, serine phos... 164 4e-39 UniRef50_A0LBV4 Response regulator receiver protein n=1 Tax=Magn... 163 6e-39 UniRef50_C4XN65 Response regulator receiver protein n=2 Tax=Desu... 162 1e-38 UniRef50_A5F941 Sensor protein n=69 Tax=Vibrionales RepID=A5F941... 162 1e-38 UniRef50_Q1JYH3 Sensor protein n=2 Tax=Proteobacteria RepID=Q1JY... 161 4e-38 UniRef50_A7BVW4 Adenylate/guanylate cyclase n=1 Tax=Beggiatoa sp... 160 5e-38 UniRef50_A4TY72 Stage II sporulation E n=1 Tax=Magnetospirillum ... 160 7e-38 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 160 7e-38 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 160 7e-38 UniRef50_B5YFU9 Sensor protein n=1 Tax=Thermodesulfovibrio yello... 160 8e-38 UniRef50_A1ZFP4 Two-component hybrid sensor and regulator n=1 Ta... 160 9e-38 UniRef50_B9M7S9 Sensor protein n=7 Tax=Geobacter RepID=B9M7S9_GEOSF 159 1e-37 UniRef50_B5JH27 Sensor protein n=1 Tax=Verrucomicrobiae bacteriu... 159 1e-37 UniRef50_B3E5T4 Response regulator receiver modulated diguanylat... 159 1e-37 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 159 2e-37 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 159 2e-37 UniRef50_A0LAN5 Response regulator receiver protein n=1 Tax=Magn... 159 2e-37 UniRef50_A0LC21 Response regulator receiver protein n=1 Tax=Magn... 158 2e-37 UniRef50_B7KDV4 Sensor protein n=1 Tax=Cyanothece sp. PCC 7424 R... 158 2e-37 UniRef50_Q3ME76 Sensor protein n=1 Tax=Anabaena variabilis ATCC ... 158 2e-37 UniRef50_Q13JL7 Sensor protein n=9 Tax=Proteobacteria RepID=Q13J... 158 2e-37 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 158 3e-37 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 158 3e-37 UniRef50_B8HVZ9 Sensor protein n=1 Tax=Cyanothece sp. PCC 7425 R... 158 4e-37 UniRef50_A7BQZ3 Sensory box/GGDEF family protein n=1 Tax=Beggiat... 157 4e-37 UniRef50_A4TWB5 Stage II sporulation E n=1 Tax=Magnetospirillum ... 157 4e-37 UniRef50_C7QU83 Sensor protein n=3 Tax=cellular organisms RepID=... 157 4e-37 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 157 5e-37 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 157 6e-37 UniRef50_Q21G04 Response regulator receiver n=2 Tax=Alteromonada... 156 7e-37 UniRef50_Q2W1D4 Serine phosphatase RsbU, regulator of sigma subu... 156 9e-37 UniRef50_B4VMU4 Sensor protein n=1 Tax=Microcoleus chthonoplaste... 156 1e-36 UniRef50_B8FCK6 Response regulator receiver modulated diguanylat... 156 1e-36 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 156 1e-36 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 156 1e-36 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 156 1e-36 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 156 1e-36 UniRef50_C8QXF1 Response regulator receiver modulated metal depe... 156 1e-36 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 156 1e-36 UniRef50_A0YR26 Regulatory components of sensory transduction sy... 155 2e-36 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 155 2e-36 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 155 2e-36 UniRef50_Q3A190 Two component signal transduction response regul... 155 2e-36 UniRef50_B2JAB7 Response regulator receiver modulated PAS/PAC se... 155 2e-36 UniRef50_B8DR11 Sensor protein n=5 Tax=Desulfovibrio RepID=B8DR1... 155 2e-36 UniRef50_A0YM63 Hybrid signal transduction histidine kinase and ... 155 2e-36 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 155 3e-36 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 155 3e-36 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 155 3e-36 UniRef50_C8X3Y5 Two component transcriptional regulator, winged ... 155 3e-36 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 155 3e-36 UniRef50_Q7M9T6 TWO-COMPONENT RESPONSE REGULATOR n=1 Tax=Wolinel... 154 3e-36 UniRef50_UPI0001C38DA3 response regulator receiver modulated dig... 154 4e-36 UniRef50_D0LRM4 Sensor protein n=1 Tax=Haliangium ochraceum DSM ... 154 4e-36 UniRef50_C7Q2J4 Two component transcriptional regulator, winged ... 154 5e-36 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 154 5e-36 UniRef50_B4VJC2 Response regulator receiver domain protein n=1 T... 154 5e-36 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 154 5e-36 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 154 5e-36 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 154 5e-36 UniRef50_Q2JML6 DNA-binding response regulator, LuxR family n=4 ... 154 5e-36 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 154 5e-36 UniRef50_Q311S5 Sensor protein n=1 Tax=Desulfovibrio desulfurica... 153 6e-36 >UniRef50_P0AEV2 Protein hnr n=144 Tax=Enterobacteriaceae RepID=HNR_ECO57 Length = 337 Score = 447 bits (1150), Expect = e-124, Method: Composition-based stats. Identities = 337/337 (100%), Positives = 337/337 (100%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA Sbjct: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV Sbjct: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA Sbjct: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE Sbjct: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP 300 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP Sbjct: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP 300 Query: 301 LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE Sbjct: 301 LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 >UniRef50_D0ZH67 Response regulator receiver protein n=20 Tax=Enterobacteriaceae RepID=D0ZH67_EDWTE Length = 358 Score = 363 bits (931), Expect = 6e-99, Method: Composition-based stats. Identities = 192/336 (57%), Positives = 250/336 (74%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M+Q L KQI+IV+D+ VFR LL + ++ G AA+G +AL+L PDL++CD++ Sbjct: 1 MSQVLTDKQIMIVDDDAVFRRLLAGYLTTQGVRVTEAANGREALKLYPQCHPDLILCDLS 60 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP MNG++LL H+ RG QTPV+VISATE+++DIA+A+RLG +DVLLKPV+D RLR+M+ Sbjct: 61 MPEMNGIELLRHLLMRGSQTPVMVISATESVSDIARAMRLGAKDVLLKPVRDFTRLRQML 120 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 ACLYP++F+S EE L DW A+ PA A +LL++LQPPVQQVI+ CRVNYRQL Sbjct: 121 LACLYPALFDSLALEENALSHDWAALQREPAQAVRLLRQLQPPVQQVIAGCRVNYRQLTE 180 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 D GLVLDIA LS D+AFYCLD TR+ GVLAAL++RA+FN LLQ QLA Q + LP Sbjct: 181 PDSCGLVLDIAPLSSRDMAFYCLDTTRSAEYGVLAALMIRAIFNALLQSQLAAQERPLPP 240 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP 300 + +LK+VN LLR+A L GQFP+L GYYH N++LVSAGL+A L + VQ+S +P Sbjct: 241 MSVILKRVNQLLRKAGLRGQFPMLAGYYHAVSGNVVLVSAGLHARLEAEDRTVQLSGAMP 300 Query: 301 LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSA 336 LGTLG+ ++NQLS R WQCQIW + G+LRLML+A Sbjct: 301 LGTLGSIHVNQLSLRSRRWQCQIWSSVGQLRLMLAA 336 >UniRef50_D1NYI5 Protein hnr n=5 Tax=Enterobacteriaceae RepID=D1NYI5_9ENTR Length = 338 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 125/335 (37%), Positives = 207/335 (61%), Gaps = 2/335 (0%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT--PDLMICDIAMP 62 + ++ILIVEDE++F ++L + SL +A +G AL+L+ PD+++CD+ MP Sbjct: 1 MKNRKILIVEDEKIFCTILREYLESLETEVYIADNGALALDLITEKHLTPDVILCDLNMP 60 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 MNG + + R PV+VISAT + + + RLG +D LLKP+K+L+ ++ + + Sbjct: 61 VMNGETFMAELVGRNIHIPVIVISATTDFTQLDRMFRLGAKDALLKPIKNLDEVKMTIHS 120 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 LYP +++ E + + + + +L++LQPPV Q+I+ R+NYRQL A+ Sbjct: 121 ALYPEKYDTESVMEHEIQNMSNILHSDKLDMLAILKQLQPPVSQIINGYRINYRQLNEAN 180 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 + GL+LDIAA+SE + FYC+D R+ G++AA L+R +FN LL+ ++H +++LP + Sbjct: 181 RFGLLLDIAAISEEQVGFYCIDTERSPQEGIMAAFLIRVVFNDLLKSAVSHPDKKLPNID 240 Query: 243 ALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVPLG 302 ++ Q+NHLL ++ GQFPLL+GY++ + KN+IL SAGL A + T H + +PLG Sbjct: 241 RIIHQINHLLEESGFSGQFPLLLGYFNTKTKNVILASAGLEAEITTENHHYHLDRNIPLG 300 Query: 303 TLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 TL + + N+L W+C I R++LM + + Sbjct: 301 TLKSYHSNRLDFHGAQWKCLIRNNDQRIKLMFNPD 335 >UniRef50_B4EXS4 Response regulator n=3 Tax=Proteus RepID=B4EXS4_PROMH Length = 339 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 137/337 (40%), Positives = 204/337 (60%), Gaps = 3/337 (0%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG-FTPDLMICDI 59 M + LVGK+ILI++DE VFR++L +FS A +G AL LL PDL++CDI Sbjct: 1 MNKALVGKKILIIDDEVVFRTMLTEYFSHEKACVYATDNGSQALLLLEEGLRPDLILCDI 60 Query: 60 AMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 MP MNG L H+ R PV+ IS T+NMA+I LR G +DV LKPV +L +L++ Sbjct: 61 RMPVMNGPTFLCHLEQRHWSFPVIAISCTDNMAEIDDMLRFGAQDVFLKPVTNLAKLKQK 120 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLV 179 V L P F S + +L W+ + + P ++++QP V+Q+++ VNYRQL Sbjct: 121 VIEVLCPGFFESELIARGQLGPLWNNLREQPHYIQSFVKQMQPQVKQIVAGYNVNYRQLN 180 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 A + GL+ DIA LS++ + FYC+DV+ NG+L ALLLR +FN L+ + + LP Sbjct: 181 DASQMGLLFDIATLSKDQIIFYCVDVSNDEENGLLVALLLRVVFNRFLKAT--EKRRFLP 238 Query: 240 ELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGV 299 + +L ++N +L + G FPL++GYYH + KN++L SAGL A + T + +++G+ Sbjct: 239 SMYNILNKINKMLEDMGVRGSFPLILGYYHTKEKNILLASAGLRAEIKTENKKYVLNSGI 298 Query: 300 PLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSA 336 PLGTL + Y+NQ+ WQC+IW ++ LM S Sbjct: 299 PLGTLHSLYINQIKCVGIDWQCKIWNQHHKINLMFSP 335 >UniRef50_Q48KH7 Response regulator n=23 Tax=Pseudomonadaceae RepID=Q48KH7_PSE14 Length = 458 Score = 300 bits (768), Expect = 6e-80, Method: Composition-based stats. Identities = 80/341 (23%), Positives = 145/341 (42%), Gaps = 11/341 (3%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 P ++LI++D+ V R+ L ++ G + + A++G+ +++ PDL++CD+ MP+ Sbjct: 66 PKTSAKLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQMFEQENPDLVVCDLRMPQ 125 Query: 64 MNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 M GL+L+ + QTPV+V+S M+D +ALRLG D L+KP++DL L V Sbjct: 126 MGGLELIRQVTAIAPQTPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRA 185 Query: 124 L-------YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQ-ELQPPVQQVISHCRVNY 175 L ++ ++E+ R ++ A + +Q + P I + + Sbjct: 186 LDRARLLTENQVYREKLEKANRELEASLHLLQEDQDAGRQVQMNMLPITPWSIDEFKFAH 245 Query: 176 RQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQN 235 + + + G +D + E +AFY DV+ G + +LL+ + LL E Sbjct: 246 QIIPSLYLSGDFVDYFRVDERRVAFYLADVSGHGASSAFITVLLKFMTTRLLFESRRGGT 305 Query: 236 QRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGL---NATLNTGEHQ 292 + +L +N L L ++ G E L G + G+ + Sbjct: 306 LPEFKPSDVLGHINRGLISCKLGKHVTMVGGVIDEESGKLTYAVGGHLPLPVLYSEGQAR 365 Query: 293 VQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 G+P+G A A + G L L+ Sbjct: 366 YLEGRGLPVGLFNEATYQDHEIDLPASFSLTMLSDGILDLL 406 >UniRef50_Q21LQ5 Response regulator receiver n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21LQ5_SACD2 Length = 399 Score = 296 bits (759), Expect = 7e-79, Method: Composition-based stats. Identities = 79/320 (24%), Positives = 141/320 (44%), Gaps = 15/320 (4%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M+Q G+++L+++D+ + R + ++ G ADG AL L P L++ D+ Sbjct: 1 MSQ--SGRRLLVIDDDTIVRQSIAAYLEDSGFLVHQEADGHSALTWLMDNPPCLVLTDLR 58 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP +GL LL+ IR + PV+VIS + D+A+ALR G D L+KP+ D+ L + Sbjct: 59 MPGTDGLTLLKAIREWDVELPVIVISGAGAVHDVAEALRHGASDYLVKPIVDMEVLVHSI 118 Query: 121 FACLYP-------SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQ-ELQPPVQQVISHCR 172 L + +E+ + +++ +++ A + +Q +L PP Sbjct: 119 RRALERHELIIENRQYRLELEKANKELKEYIRVLERDQLAGRRVQSKLLPPPAVSFGGIN 178 Query: 173 VNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ-- 230 V+Y+ + + G +D LS LAFY DV+ G + L+ + +EQ Sbjct: 179 VDYKIIPSLYLSGDFVDYGFLSNRYLAFYLTDVSGHGAASAFVTVWLKQIVRRFFREQEI 238 Query: 231 LAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGL---NATLN 287 ++ + +LLK +N + ++ + VG + V AG + Sbjct: 239 FNTKDSFERDTASLLKLINKEVIRSKVGAHMTCFVGVIDTHTHEMRYVVAGHLPLPLLIA 298 Query: 288 TGEHQVQISNGVPLGTLGNA 307 G + G PLG +A Sbjct: 299 NGRAEYLEGKGKPLGIFEDA 318 >UniRef50_A4BEJ2 Probable two-component response regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BEJ2_9GAMM Length = 397 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 90/340 (26%), Positives = 144/340 (42%), Gaps = 11/340 (3%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L +L+VEDE+ R + ++F G + AA+G + L PDL+ICD+ MP M Sbjct: 3 LNDATLLVVEDEKAVRDSIVAYFEDSGYHIIEAANGSEGLTRFEESKPDLVICDLRMPGM 62 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +GL LL I D+TPV+V+S M D+ +ALRLG D L+KPV DL+ L V L Sbjct: 63 DGLHLLNRIMESTDETPVIVVSGAGVMTDVVEALRLGAADYLMKPVVDLSVLEHSVERAL 122 Query: 125 YPSM-------FNSRVEEEERLFRDW-DAMVDNPAAAAKLLQELQPPVQQVISHCRVNYR 176 S+ + +E+ + +D D + + A + Q L P Q V + Sbjct: 123 ERSLLFKENYRYRQELEQRNQELQDHVDRLKLDLQAGRAVQQRLLPRFQLQQGGYTVRHD 182 Query: 177 QLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQ 236 + G ++D L N L FY DV+ G + L LL++ + E + Sbjct: 183 MEPSTYLSGDLVDYFELGPNQLVFYIADVSGHGASSALITLLIKTQIDRYRDELENDTSD 242 Query: 237 RLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGL-NATLNTGEH--QV 293 + G +L+Q+N L + + G + L A A + + EH Q Sbjct: 243 IVTNPGQVLRQINLELLKTQTGKHATMFYGVIDTQEDRLDYAIAAHFPAPVISFEHAGQA 302 Query: 294 QISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 + +G ++ ++ + G LM Sbjct: 303 IQPESLAVGLFDDSGYETRHVSLKGFRQLTLLSDGIFELM 342 >UniRef50_Q1N0N5 Response regulator n=1 Tax=Bermanella marisrubri RepID=Q1N0N5_9GAMM Length = 395 Score = 279 bits (715), Expect = 8e-74, Method: Composition-based stats. Identities = 73/336 (21%), Positives = 135/336 (40%), Gaps = 11/336 (3%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+++DE + R + ++ G + A++G + + PD+++CD+ MP M+GL Sbjct: 7 RVLVIDDEAIVRDSIVTYLEDSGFDVIEASNGTEGIACFNSQNPDIVLCDLRMPNMDGLA 66 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP-- 126 +L+ I TP +VIS MAD+ +ALRLG D L+KP+ DL L + L Sbjct: 67 VLQSINKSNPNTPFIVISGAGVMADVVEALRLGASDYLIKPIIDLEVLEHSIKRNLRQLR 126 Query: 127 -----SMFNSRVEEEERLFRD-WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 + ++E + + + + A ++ + + P Q + +Y + + Sbjct: 127 LILQNQNYRQQLERKNEQLEHRLEELRLDQQAGREVQKRMLPDPQSQLKGVEFDYHIIPS 186 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 G +D +S + + FY DV+ G + +LL+ L N L + +Q + Sbjct: 187 LYLSGDFIDYFPISADKIVFYVADVSGHGASSAFITVLLKNLTNRLRRNLRRQSSQEILT 246 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAG---LNATLNTGEHQVQISN 297 +L ++N L A L L G L G + + Sbjct: 247 PDNVLSRINKELVDAQLGKHVSLFWGMLDLPKGTLSYSVGGQFPMPILCTDYGAEYLQGK 306 Query: 298 GVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 P G A + + + G L +M Sbjct: 307 SQPAGLFAAAQYQTYDKEITGNFRLLAVSDGILEVM 342 >UniRef50_C5BR05 Response regulator receiver domain protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BR05_TERTT Length = 406 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 77/311 (24%), Positives = 136/311 (43%), Gaps = 13/311 (4%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 Q+L+++D+ + RS + ++ G + DG E L DL+I D+ MP + GL Sbjct: 7 QLLVIDDDAMIRSSVVTYLEGAGFKVHHSRDGASGCEWLATHPVDLVITDLCMPDVGGLS 66 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP-- 126 +L +++ PV+V+S + D+ +ALR G D L+KP+ DL L V L Sbjct: 67 ILRSVKHCHPNLPVIVLSGVGVVRDVVEALRQGAADYLVKPLVDLEVLVHSVKRVLERQS 126 Query: 127 -----SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQ-ELQPPVQQVISHCRVNYRQLVA 180 + +E+ R R++ ++++ A + +Q +L P +S +++ + + Sbjct: 127 LLHDNQRYREELEKANRDLREYVRLLEHDQKAGRRVQSKLLPVSPLTVSDITLSFEVIPS 186 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRL-- 238 G +D LS LAFY DV+ G + L L L +EQ ++ Sbjct: 187 LYLSGDFIDYGFLSRRYLAFYLTDVSGHGAAPAFVTVWLNQLVRRLFREQRIFDSEESFK 246 Query: 239 PELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGL---NATLNTGEHQVQI 295 + +LLK VN + ++ + LVG + + + V AG L + Sbjct: 247 RDAASLLKLVNQEVIRSKIGCHLTSLVGVIDTQTREMRYVVAGHLPLPVLLVGDRCEYLS 306 Query: 296 SNGVPLGTLGN 306 G PLG + Sbjct: 307 GKGKPLGFFED 317 >UniRef50_B1XIW8 Two-component response regulator (RsbV-like) n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XIW8_SYNP2 Length = 376 Score = 269 bits (689), Expect = 8e-71, Method: Composition-based stats. Identities = 76/304 (25%), Positives = 131/304 (43%), Gaps = 20/304 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 QIL+++D+ R LL+ G A+DG L+L PDL+I D MP MNG++ Sbjct: 3 QILVIDDDLAMRVLLERTLKRKGYQVTTASDGKTGLDLAIATRPDLIISDWMMPEMNGIE 62 Query: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + + ++ D T +++SA + + D L G +D L KP+ + L V + L Sbjct: 63 VCQAVKQHPDLSTTFFILLSALDAVEDKVMGLDAGADDFLCKPISS-HELEARVRSGLRI 121 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 + ++R A+ AA+ ++ L P H +++ + ++ G Sbjct: 122 CRLTQDLTAQKR------ALESELTEAAQYVKSLLPDPLYQ-DHLQIDSCFIPSSQLGGD 174 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 D LS +L FY LDV+ G + AAL ++ N LL+ + + A+L Sbjct: 175 GFDYFWLSPQELVFYLLDVSGHG---LKAALPSISILN-LLRSRNKTKGLDYRSPQAVLN 230 Query: 247 QVNHLLRQANLPGQ-FPLLVGYYHRELKNLILVSAGLNATL-----NTGEHQVQISNGVP 300 +N + GQ F + G Y + + + AG + Q+ + G P Sbjct: 231 HLNRTCQFLEQQGQYFTMWYGIYDVDDRIVTYACAGHPPAVLVKPNTGEPPQLLKAQGFP 290 Query: 301 LGTL 304 +G L Sbjct: 291 IGML 294 >UniRef50_Q1ZRM9 Hypothetical response regulator n=5 Tax=Photobacterium RepID=Q1ZRM9_PHOAS Length = 354 Score = 269 bits (689), Expect = 8e-71, Method: Composition-based stats. Identities = 106/345 (30%), Positives = 169/345 (48%), Gaps = 28/345 (8%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L GK +L+VED+ VFR+++ + S G A +G++ L L PDL++CD+AMP M Sbjct: 6 LEGKDVLVVEDDPVFRNMIVGFLESQGCLVQEADNGLEGLRALKEHIPDLLLCDLAMPVM 65 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 G++ +E + + P++VIS T MAD+A ALRLGV+D L+KP++++ L+ + + L Sbjct: 66 TGMEFVEEVSIQYPMIPIIVISGTGEMADVALALRLGVKDFLIKPLENILMLKSSMISVL 125 Query: 125 YPSMFNSRVEE----------------EERLFRDWDAMVDNPAAAAKLLQELQPPVQQVI 168 + + EE L + +NP AA +LL L P Q Sbjct: 126 KGQDSATHHRQDFSNRWFATTEDTEPVEEELEWHIKDLQNNPKAARELLVGLMPETQSTY 185 Query: 169 SHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQ 228 ++NY L + D ++LD L + LAFY LD + HN ALL+RA FN L+ Sbjct: 186 GRWQLNYCVLQSIDSLPVILDYTWLLDGQLAFYLLDTSSGDHNATATALLIRAFFNDYLR 245 Query: 229 EQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNT 288 Q L L L+ + ++ + L G + + L ++ AG+ + L T Sbjct: 246 N----QGNCLESLSHLVSLIEKGMKHSGYASPIKALFGVFDLSDRCLHILPAGIESQLRT 301 Query: 289 GEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 + ++++G LG A N LS + + +GGRL L Sbjct: 302 SDDSFEVASGEWLG--REARHNMLS------KLALSPSGGRLSLS 338 >UniRef50_Q8YUQ5 Two-component response regulator n=28 Tax=Cyanobacteria RepID=Q8YUQ5_ANASP Length = 421 Score = 267 bits (682), Expect = 5e-70, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 143/331 (43%), Gaps = 20/331 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+++D+++ + +L G +LA +G+ +E P L+ICD M M+GL+ Sbjct: 37 KILVIDDDRIIQLILKQALQEQGYEVILATNGLQGIEQADKHHPALIICDWQMDEMDGLE 96 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + I++ T +++++ + D + L G +D L KP+ D+N L+ V + L Sbjct: 97 VCRKIKSEPTLSTTFFILLTSRRAVEDRVEGLDTGADDFLSKPI-DVNELKARVRSGLRL 155 Query: 127 SMFNSRVEEEERLFRDWDAMVD-NPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 N ++ + + +++ AA ++ + P Q + +N + L ++ G Sbjct: 156 YQTNQELQRLAQDLQLQKQLLETELNEAADYVKSILP--QPLSGLININSQFLPSSQLGG 213 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 D L ++ L Y LDV+ G + AAL ++ N L L + L + +L Sbjct: 214 DCFDYYWLDDDHLVIYLLDVSGHG---LAAALPSISIHNLLRSRSLPQAD--LYDPAQVL 268 Query: 246 KQVNHLLRQANLPGQ-FPLLVGYYHRELKNLILVSAGLNATL-------NTGEHQVQISN 297 + +N + Q F + G + R + L SAG L + + Q + Sbjct: 269 RDLNLFFQMDQQNCQYFTMWYGVFKRSSQQLTYASAGHPPALLLSPSTDSQLDIQKLATR 328 Query: 298 GVPLGTLGNA-YLNQLSQRCDAWQCQIWGTG 327 +P+G A Y N + + ++ G Sbjct: 329 SLPIGAFTEAKYCNAICNIQSGSKLYVFSDG 359 >UniRef50_A0YCS2 Probable two-component response regulator n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCS2_9GAMM Length = 408 Score = 264 bits (674), Expect = 4e-69, Method: Composition-based stats. Identities = 62/311 (19%), Positives = 137/311 (44%), Gaps = 12/311 (3%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +Q+L++++++V R + ++ G + A++ L++L P++++CD+ + Sbjct: 6 QQLLLIDNDEVERKSVAAYLKGAGFIVLEASNVSQGLDILADHQPEVVLCDLNATGTDS- 64 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 L+ I++ TPV+V++ M+D+ ALR G D L+KP+ D+ L + C Sbjct: 65 GPLQAIKSDFADTPVIVMATDGVMSDVVWALRYGAADYLIKPIADMEVLEHAISRCQEQR 124 Query: 128 M-------FNSRVEEEERLFRDWDAMVDNPAAAAKLLQ-ELQPPVQQVISHCRVNYRQLV 179 + ++E+ + ++ +++ A + +Q ++ PP + + ++R + Sbjct: 125 QLRQQNLDYRQKLEQANQGLQESFKVLELDQLAGREVQLKMLPPTVKQFGKYQFSHRIIP 184 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 + G +D + ++ + ++ DV+ G + +LL+ +F + L + + Sbjct: 185 SFYLSGDFIDYFTVGDDFVVYFIADVSGHGASSAFVTVLLKNMFARKRSDYLHQNDASIL 244 Query: 240 ELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGL---NATLNTGEHQVQIS 296 A+L N L ++ L VG L AG GE Q + Sbjct: 245 SPAAMLDIANRNLLTTDIGKHATLCVGVIDLRTDTLSYSVAGHLPLPMLTVDGEPQYLQT 304 Query: 297 NGVPLGTLGNA 307 G+P+G A Sbjct: 305 EGMPVGLFEAA 315 >UniRef50_B7JXS3 Response regulator receiver modulated serine phosphatase n=4 Tax=Cyanobacteria RepID=B7JXS3_CYAP8 Length = 379 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 74/311 (23%), Positives = 135/311 (43%), Gaps = 23/311 (7%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 QIL+++D+ LL + G + +G D L PDL+ICD MP +NGL+ Sbjct: 3 QILVIDDDPTICLLLQRTLTRSGYEVICVNNGQDGLIKAQELCPDLIICDWVMPGLNGLE 62 Query: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + ++ + T +++++ ++ D K L G +D L KP++ +N L V + L Sbjct: 63 VCSQVKTFPELATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIE-MNELIARVRSGLRL 121 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 + ++E+++L A + + + P S ++ R + G Sbjct: 122 HELSQDLKEQKQLLEAELAEAAD------YVTSILPEPLTSTS-LSIDTRFFPSRQLGGD 174 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 D L E+ LA Y LDV+ G + AAL ++ N L +QL+ + E +L Sbjct: 175 GFDYFWLDEDHLAIYLLDVSGHG---LRAALPSLSVINLLRSQQLSFVDYY--EPSNVLS 229 Query: 247 QVNHLLRQA-NLPGQFPLLVGYYHRELKNLILVSAGLNATLNTG-------EHQVQISNG 298 +N + F + G Y+++ + LI SAG + + Q+ + G Sbjct: 230 ALNQSFQMTYRNDKYFTIWYGVYNQKNRCLIYSSAGHPPAILLETKENKIIKQQLLKTPG 289 Query: 299 VPLGTLGNAYL 309 P+G +A+ Sbjct: 290 FPIGMFLDAHY 300 >UniRef50_B3PDM6 Response regulator n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PDM6_CELJU Length = 406 Score = 257 bits (657), Expect = 4e-67, Method: Composition-based stats. Identities = 81/352 (23%), Positives = 144/352 (40%), Gaps = 17/352 (4%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG--FTPDLMICD 58 MT L +++LI++D+ + R + ++ G D AL LL P L+I D Sbjct: 7 MTN-LADRKLLIIDDDALVRQSIVTYLRDSGFLVSDTGDAQAALALLQDADHLPHLVITD 65 Query: 59 IAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 + M ++GL+LL+ + + + PV+VIS M+D+ ALRL D L+KP+ DL L Sbjct: 66 LRMAGVDGLQLLQELHDLYPKLPVIVISGAGVMSDVVAALRLCARDYLIKPIVDLEVLVH 125 Query: 119 MVFACL-------YPSMFNSRVEEEERLFRD-WDAMVDNPAAAAKLLQELQPPVQQVISH 170 V L + ++E R ++ A+ + A ++ + + P Sbjct: 126 SVNRVLDQCELESENLRYREQLEAANRELKENLRALERDHIAGRRVQRRMMPSGISTEEG 185 Query: 171 CRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ 230 + + G +D A + LAFY DV+ G + + L+ L + ++++ Sbjct: 186 YVAAHTIAPSLFLSGDFVDYAHIKRRYLAFYLADVSGHGASSAFVTIWLKYLVSRMVRDD 245 Query: 231 LAHQNQRLPELGA--LLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGL---NAT 285 ++ E GA +L+Q+N L + L VG + V AG Sbjct: 246 GLFGDENSFEQGANTMLQQINRELHETRLSHHLTFFVGVIDTFTGQMRYVVAGHLPMPIL 305 Query: 286 LNTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 + Q G P+G + + + + + G L + LS E Sbjct: 306 ITDTGAQYLQGMGKPVGIFKDVIWSTYQCQLPERFSLVCFSDGVLEI-LSPE 356 >UniRef50_B5XRS9 Response regulator n=9 Tax=Enterobacteriaceae RepID=B5XRS9_KLEP3 Length = 404 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 76/311 (24%), Positives = 128/311 (41%), Gaps = 12/311 (3%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + +LIVED V+R LL + G A +GV AL +L L+I D MP M Sbjct: 1 MSAHHVLIVEDSLVYRRLLSRMLTQWGYIVSEAENGVAALAILENQPVSLVISDWEMPEM 60 Query: 65 NGLKLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 NGL L +R R G +++++A E+ D+ + G +D L KPV+ + LR + A Sbjct: 61 NGLTLCREVRRRQFGHYVYLILLTAREDPGDLTQGFAAGADDFLSKPVEQ-SELRARLHA 119 Query: 123 CLYPSMFNSRVEEEE-RLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 + + RL + + AA++ Q + P Q ++ L +A Sbjct: 120 GARILSLEADLAARNTRLSEALRQIEQDLELAARIQQSVLPAHQLCYQGFFSDWIFLPSA 179 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLR--ALFNGLLQEQLAHQNQRLP 239 G + ++ L E L FYC+DV+ G + +L + L ++ L + + Sbjct: 180 WVSGDIFNVFPLGE-HLGFYCVDVSGHGVGAAMMSLAVARQFLHGRAVERFLFSADNQPA 238 Query: 240 ELGALLKQVNHLLR--QANLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQ 294 +++ +N +A + F L+ G L AG G + Sbjct: 239 SPAEVVQILNGRFCSDEAEIVSYFTLIYGVIDLTTGEGKLCQAGHPTPFIVTVDGGVRSA 298 Query: 295 ISNGVPLGTLG 305 S G P+G + Sbjct: 299 GSGGAPVGLIN 309 >UniRef50_Q7MIU6 Response regulator n=56 Tax=Vibrionales RepID=Q7MIU6_VIBVY Length = 368 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 90/322 (27%), Positives = 155/322 (48%), Gaps = 24/322 (7%) Query: 1 MT---QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMIC 57 MT + + K I +V+D+ +FR + ++ S G V + +G+ AL+ L PD+++C Sbjct: 10 MTSAREAVQPKLIQLVDDDPIFRRITSAYLESQGYKVVESENGLQALQQLRECDPDIVLC 69 Query: 58 DIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 D++MP ++G++ +E + P++V+SAT M+D+AKALR G++D L KP+ D L Sbjct: 70 DLSMPVLDGIEFVEEVSLEYPSLPLIVVSATGEMSDVAKALRFGIKDFLPKPIGDYQHLA 129 Query: 118 EMVFACLYPSMFN-----------------SRVEEEERLFRDWDAMVDNPAAAAKLLQEL 160 E + L SM + + +E+ L + + DNP +A LL L Sbjct: 130 EAIENTLEDSMNHMSDQRDFSSQWFRVDGGGELPDEQELHWHLNYLEDNPNSARDLLHAL 189 Query: 161 QPPVQQVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLR 220 P + +Y+ L + D LV D L AFY +D GV ALL+R Sbjct: 190 LPDKDTSQGDWKFSYKLLQSTDMMPLVFDYRWLMNGQFAFYLVDSASVEKQGVATALLIR 249 Query: 221 ALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSA 280 ALF+ L+ + +L +++ + +R ++ L G ++ ++ A Sbjct: 250 ALFDDYLRNLKSFSA----DLKDIVEILERGIRYSDCACPVNALFGIADLVDGSVEILPA 305 Query: 281 GLNATLNTGEHQVQISNGVPLG 302 GL++ +TG I+ G LG Sbjct: 306 GLDSQWSTGFINQHIAAGNRLG 327 >UniRef50_A0KNX4 Response regulator receiver domain n=2 Tax=Aeromonas RepID=A0KNX4_AERHH Length = 323 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 86/309 (27%), Positives = 147/309 (47%), Gaps = 16/309 (5%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M++ G +IL+VEDE VFR L ++ + GA A DG++ L + PD+++CD+ Sbjct: 1 MSK--AGLRILVVEDEAVFRHSLVNYLAHDGACVFQAEDGIEGLSAAALYHPDVVLCDLN 58 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP M+G +++ + R PV+VISA M + +ALR G D LLKP+ D ++R + Sbjct: 59 MPNMDGHEVIACLTARYPHIPVIVISAQSKMEAVERALRAGARDFLLKPISDFGQVRRSI 118 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 CL N ++ L D ++ AA +LL L+PP Q +V + + Sbjct: 119 EQCLST---NHGYGQQLELMEHIDFFREHDQAATRLLAWLKPPGLQEWGPWQVTFEGM-- 173 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 L + ++ L +++ G + L+R+L N ++ ++ L + Sbjct: 174 ---GNLFIPDTFKVDDKLLVLVMELPILGVDAAFCGALVRSLMNAPYRQFQRGESLLLTQ 230 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP 300 LL +N L ++ L F + + +E L+ +AGL T H + S G+P Sbjct: 231 PHRLLDYLNLQLVESGLRHSFAMAALLFDQEDG-LVFANAGL-----TSPHWLVRSGGLP 284 Query: 301 LGTLGNAYL 309 LG L ++ Sbjct: 285 LGLLRTSHY 293 >UniRef50_Q1NPP0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPP0_9DELT Length = 403 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 83/344 (24%), Positives = 135/344 (39%), Gaps = 31/344 (9%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+DE+V R +L G ADG AL+ L G DL++ D+ MP ++GL Sbjct: 7 RILVVDDEEVNRDILVRRLIRRGYQVEAVADGQQALDWLAGQPCDLVLLDVMMPVLDGLS 66 Query: 69 LLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 L +R T PV++ +A ++ D+ AL G D + KP+ D L+ + L Sbjct: 67 ALRRLRRDFSPTALPVIMTTARDDSEDVVTALEAGASDYVTKPI-DFPVLQARMDTQLRL 125 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 E L + + AAA + + P R R A+ G Sbjct: 126 K------RTTEELTAAYQRIKTEIEAAALVQRAQIPAGPLTFEGWRCACRYQPCAELGGD 179 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAA-----LLLRA----LFNGLLQEQLAHQNQR 237 +L+ L + LA Y LDV+ G L + LL + G Q+ A Q + Sbjct: 180 ILNYFPLDDELLALYLLDVSGHGAGAALLSSGVGRLLSASGDRITLTGASQDIFADQQAQ 239 Query: 238 LP---------ELGALLKQVNHLLRQANLPGQ-FPLLVGYYHRELKNLILVSAGLNATL- 286 P G +L ++N + Q F ++ + SAG L Sbjct: 240 PPRRRNSDRPASPGEILARLNRRFPIESTTSQFFTIIYVIIDCRQGLVRYASAGHPGPLV 299 Query: 287 --NTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 +G+ + G+P+G + NA + A ++ + G Sbjct: 300 MEPSGQVRYASGTGLPVGIMENAEFVEHELPLAAGGRMLFFSDG 343 >UniRef50_D0IC36 Response regulator n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0IC36_VIBHO Length = 385 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 95/316 (30%), Positives = 158/316 (50%), Gaps = 21/316 (6%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L GK++LIVED+ +F ++ + G T A +G+D L+ L PDL++ D++MP M Sbjct: 36 LEGKEVLIVEDDPIFSRIISHFLRKEGCTVREAENGLDGLKALREGIPDLLLSDLSMPVM 95 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 GL+ +E + PV+VIS T MAD+A+ALR GV+D L+KP++D+ ++ + + L Sbjct: 96 TGLEFVEEVSMEYPMLPVIVISGTGGMADVAQALRFGVKDFLIKPIEDVMVVKSAILSVL 155 Query: 125 YPSMFNSRVEEE-----------------ERLFRDWDAMVDNPAAAAKLLQELQPPVQQV 167 + + + E L + ++DNP A LL L P Sbjct: 156 EENDGGVSSDADFSQQWFKVSQDGDQPLTEELKWHLEDLLDNPGNARDLLMGLMPEQDSQ 215 Query: 168 ISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL 227 R++Y L +AD +VLD + + +AFY +D AG NG L++RA FN L Sbjct: 216 QGDWRLSYHSLQSADISPIVLDYTWMMDGKMAFYMVDSASAGENGTATTLMIRAFFNEYL 275 Query: 228 QEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN 287 + Q+A + + L+ Q+ + ++++ + G + L ++SAGLNA ++ Sbjct: 276 RSQIADEKGFI----HLVHQIEYAIKRSTYASPIRAMFGILNASDNQLDVLSAGLNAVVD 331 Query: 288 TGEHQVQISNGVPLGT 303 V + N LG Sbjct: 332 GTGKAVIVKNNNLLGI 347 >UniRef50_A6GMM8 Response regulator n=1 Tax=Limnobacter sp. MED105 RepID=A6GMM8_9BURK Length = 1026 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 78/322 (24%), Positives = 135/322 (41%), Gaps = 18/322 (5%) Query: 1 MTQPLVGK---QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMIC 57 MT K +IL+V+D V R+L + G AA G +A+EL+ L++ Sbjct: 1 MTDHDPNKLLPRILVVDDSVVERNLFVHMVAKWGYPVEFAASGQEAIELVERDRFQLVLA 60 Query: 58 DIAMPRMNGLKLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNR 115 D MP M G +L +R G T ++++SA + + KAL G +DVL KPV D N Sbjct: 61 DWQMPGMQGTELCVALRQLDLGQYTYIILMSAQNDEEFLIKALDAGADDVLTKPV-DGNE 119 Query: 116 LREMVFACLYPSMFNSRVEEE-ERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVN 174 L + + + +R+ + L R D + + A + L + P Q Sbjct: 120 LEARLQSAVRRIELQARLARKTAELVRAHDVIAQDLRAVSGLQRSFLPEAQSPFQGLNYQ 179 Query: 175 YRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNG------LLQ 228 + + + G L + L + FY LDV+ G + ++ L +F + + Sbjct: 180 WLSVPSKYVSGDHLQVFELQRDVYGFYLLDVSGHGIPAAVKSMQLVQMFADRSATSIVFE 239 Query: 229 EQLAHQNQRL-PELGALLKQVNHLLRQANLP-GQFPLLVGYYHRELKNLILVSAGLNATL 286 + QRL ++ ++N L +Q F ++ G ++ + + L AG + L Sbjct: 240 GRFGSDGQRLVSRPRDVVARLNRLFQQTESDLSYFTMIYGVFNTANRRVSLCQAGHPSPL 299 Query: 287 ---NTGEHQVQISNGVPLGTLG 305 + +V S G P+G Sbjct: 300 LLSAGKQAEVLGSGGYPVGLFD 321 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 65/310 (20%), Positives = 128/310 (41%), Gaps = 16/310 (5%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 VGK I+IV+D + F + ++ S G T A +G +AL L+ PD ++ D MP M+ Sbjct: 448 VGKSIVIVDDSRSFLRIFEAMLHSWGYTVHSAKNGHEALALIEKHQPDFVLTDWDMPGMS 507 Query: 66 GLKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G++L E +R + T +++I+ + D+ +LR+G +D + KPV L+ + Sbjct: 508 GIELCEQVRAQKQNAYTYIIMITGYASRDDLLNSLRVGADDFMTKPVNP-GELKVRLKTA 566 Query: 124 LYPSMFNSRVEEEE-RLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 + + +E L + ++A+ + +++ + L P +Q + Sbjct: 567 ERIADLHMGLERRHTELSQLYEALQRDMREVSRIQRALLPKSKQDPWPFAIQTIYQPQGY 626 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL--------QEQLAHQ 234 G + + N+ F+ L++ L + L F+ +E + Sbjct: 627 VCGKQMGLLETQANEHGFFMLNMAGQDTATALQTMALARWFSMARATRVLFPVEETSSKI 686 Query: 235 NQRLPELGALLKQVNHLLRQAN-LPGQFPLLVGYYHRELKNLILVSAGLNATLNTGE--- 290 + L +L Q++ + P QF LL G + + L++ G A + Sbjct: 687 RRYLASPEQVLAQLSSISPSLKDEPPQFDLLYGLINLDQGTLLVAGIGEWAMVMAQPGLA 746 Query: 291 HQVQISNGVP 300 + G P Sbjct: 747 PAFLGTQGEP 756 >UniRef50_B5JB24 Stage II sporulation protein E n=3 Tax=Rhodobacteraceae RepID=B5JB24_9RHOB Length = 401 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 80/327 (24%), Positives = 146/327 (44%), Gaps = 23/327 (7%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 +T PL +I++ ED+++ + L + LG V A DGV ALELL ++I D+ Sbjct: 2 LTLPL---KIIVAEDDELQQFYLCGLINGLGYEAVPAQDGVSALELLTQTDAQIVISDLQ 58 Query: 61 MPRMNGLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLK---PVKDLNR 115 MP ++G+ L IR + +++++ E+ +L GV+D + K P Sbjct: 59 MPNLDGIGLTHKIRGLDLEHYIHIIMVTGAEDDDVRTASLLAGVDDFITKGSGP----AM 114 Query: 116 LREMVFACLYPSMFNSRVEEEERLFRDWDA-MVDNPAAAAKLLQELQPPVQQVISHCRVN 174 L+ + + + E R+ ++A + ++ AAA ++L P +++ I RV Sbjct: 115 LKARIRTATRLINHATELAERTRILEVYNARIQEDLRAAATAQRQLLPDLKKDIMGFRVA 174 Query: 175 YRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL--- 231 + ++ G + AL ++ L FY +DV+ G V AALL A+ + + Sbjct: 175 SAFVPSSIVSGDMFGCFALCDDKLGFYAVDVSGHG---VHAALLSVAIGHLVTPAYFITK 231 Query: 232 AHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNAT---LNT 288 A + P+L A++ +N + F + G + L AG + + Sbjct: 232 AFDSSGTPDLAAMVAGLNTRFGASENDDYFTMFCGVVDKISGRLDYCQAGYPSPSYVDQS 291 Query: 289 GEHQVQISNGVPLGTL-GNAYLNQLSQ 314 G + G P+G + G AY N++ Q Sbjct: 292 GTAEAIGDGGFPVGMISGVAYENKVHQ 318 >UniRef50_A1U0P5 Response regulator receiver protein n=4 Tax=Gammaproteobacteria RepID=A1U0P5_MARAV Length = 402 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 68/312 (21%), Positives = 127/312 (40%), Gaps = 15/312 (4%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 ++ILI++ ++ R+ L + + G AA A L PD++ D+ + Sbjct: 6 ERILIIDADEQARADLSRYLEARGFYVTGAAGVNAARGLFDDNIPDVIFADLPPEAIR-- 63 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD--------LNRLREM 119 L + TP++ +++++ AD+ +A+R G DV+LKP D + +L + Sbjct: 64 DLSRRLDETESFTPIVACTSSQSSADVVQAMRAGAADVVLKPCNDDRNALDDVIGKLFDR 123 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQ-ELQPPVQQVISHCRVNYRQL 178 V ++ +EE R R+ A + A + +Q ++ P Q +S V+Y Sbjct: 124 VRVNRLNQLYRQELEEANRDLRNGIAELRADQNAGRKVQLKMLPDHQLTLSGLSVDYLIK 183 Query: 179 VAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRL 238 + G LD +SE+ + Y DV+ G + +LLR L N L + + + Sbjct: 184 PSLYLSGDFLDYFRISEDKVLVYIADVSGHGASSAFVTVLLRNLTNRLQRNLRRQSSDDI 243 Query: 239 PELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNA----TLNTGEHQVQ 294 L+++N L L + VG + L + GE + Sbjct: 244 LHPERFLERINSELLDTGLGKHVTVFVGIISTTERTLSYAVGAHFPMPILSFEDGETRFL 303 Query: 295 ISNGVPLGTLGN 306 +G+P+G Sbjct: 304 EGSGLPVGLFET 315 >UniRef50_Q2LXY9 Response regulator receiver domain and a sigma factor phosphatase domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXY9_SYNAS Length = 402 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 59/312 (18%), Positives = 119/312 (38%), Gaps = 12/312 (3%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + ++ILI++D R+LL + G A DG D L + + PDL++ DI MP ++ Sbjct: 1 MKEKILIIDDSPDIRALLARFLRKAGYDIAEAHDGEDGLRQVKAWKPDLILLDIVMPGID 60 Query: 66 GLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G ++ I+ + PV+ +SA AD K L +G D + KP + + Sbjct: 61 GYQVCRSIKGDSCSRDIPVIFLSARSEAADKIKGLAIGGADYITKPFDRGEVMARIENQF 120 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 + + L + ++ AAA + + L P I + ++ + + Sbjct: 121 KIRHLTYELILANAELTEKQKRLDEDLQAAAGIQRSLLPQKIPQIEGLDIAWKFMPSEQI 180 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFN-------GLLQEQLAHQNQ 236 G + ++ L E+ + FY +D++ G L + + +A + Sbjct: 181 GGDIFNVLRLDEDHIGFYMIDISGHGVPAALVTFSVSQALQPHMGYTIRKIPGSVACPDY 240 Query: 237 RLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQV 293 + +LK ++ ++ + +L+ +A L G ++ Sbjct: 241 EIVPPQEVLKALDGEYPWDRFEKFLTIIYLIVNLREGSLVYSNAAHPPPLLLHQDGAFKL 300 Query: 294 QISNGVPLGTLG 305 G +G G Sbjct: 301 LDKGGTIIGLDG 312 >UniRef50_D0ZCI2 Serine phosphatase RsbU, regulator of sigma subunit n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZCI2_EDWTE Length = 421 Score = 239 bits (611), Expect = 8e-62, Method: Composition-based stats. Identities = 73/322 (22%), Positives = 127/322 (39%), Gaps = 14/322 (4%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L+ +LIV+D +R LL + + + A DG AL L ++I D MP M Sbjct: 7 LLADTVLIVDDSPGYRRLLATILARWQYRVIEAQDGEQALACLASHRVHIVISDWEMPLM 66 Query: 65 NGLKLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 +G L IR G +++++ ++ D+ + G +D L KP+ +LR + A Sbjct: 67 DGAALCRAIRAGDYGHYIYLILLTIRQSTEDMLAGMAAGADDFLTKPLNQ-GQLRSRLHA 125 Query: 123 CLYPSMFNSRVEEEE-RLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 + + L + + + AAA + + L P Q I+ ++ L +A Sbjct: 126 AQRIISLEATLAARNATLAHAYQQIESDLQAAAAMQRNLLPSHDQTINGFHADWLFLPSA 185 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNG--LLQEQLAHQNQRLP 239 G +L+ L + LAFYC+DV G + + A + FN L L + + P Sbjct: 186 YVSGDLLNYVLLDTHHLAFYCVDVAGHGVSAAMLAQSVAQEFNSALLTHSLLFSPSAQAP 245 Query: 240 -ELGALLKQVNHLLR----QANLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEH 291 ++ ++N + + F L+ G + L AG L G Sbjct: 246 APPHQVVGELNRRFCLEPQEDGVMRYFTLVYGVLDTRNGQIALCQAGHPTPLWIRADGSL 305 Query: 292 QVQISNGVPLGTLGNAYLNQLS 313 G+P+G A + Sbjct: 306 SGVGDGGLPIGLFEWAAYEDHT 327 >UniRef50_B5FFM8 Hnr protein n=3 Tax=Aliivibrio RepID=B5FFM8_VIBFM Length = 368 Score = 237 bits (604), Expect = 5e-61, Method: Composition-based stats. Identities = 88/325 (27%), Positives = 160/325 (49%), Gaps = 22/325 (6%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L K ILIV+D+ +FRS++ + + A +G++ L++L PD+++CD+AMP + Sbjct: 22 LRNKDILIVDDDPIFRSMIRAVLETYSCNVKEANNGLEGLQMLKHSLPDVLLCDLAMPIL 81 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 NG++ +E P++VIS + +M D+AK LRLG +D L+KP+ D++ L + + + L Sbjct: 82 NGIEFVEEAVLEYPMLPIIVISGSGDMQDVAKVLRLGAKDFLVKPISDVSILIKSLSSAL 141 Query: 125 YPSMFNSRVEE----------------EERLFRDWDAMVDNPAAAAKLLQELQPPVQQVI 168 S +S + + L + + + P +LL EL P + Sbjct: 142 KLSEESSLRMQDFSSQWFRTSELDKSCNDELHWHLEYLQEEPNVGRELLFELLPESEAQH 201 Query: 169 SHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQ 228 ++ +++YR L + D L+ D L + L FY +D G NGV++ LL+RA FN ++ Sbjct: 202 ANWKLSYRLLQSTDGMPLIFDYEWLLDGRLFFYLVDSDSGGENGVISCLLIRAFFNDFIR 261 Query: 229 EQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNT 288 +Q N + A+++ + + + GY + + ++SAGL+A + Sbjct: 262 DQQMSTN----TISAMVESIEKGMSTMENSQAMSGVFGYVDLSEQAVFILSAGLDAIWES 317 Query: 289 GEHQVQISNGVPLGTLGNAYLNQLS 313 + + L NA NQ+ Sbjct: 318 NNQRNVLRANNQLTI--NASSNQVH 340 >UniRef50_B0SE00 Sensor protein n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SE00_LEPBA Length = 1065 Score = 236 bits (603), Expect = 7e-61, Method: Composition-based stats. Identities = 74/299 (24%), Positives = 121/299 (40%), Gaps = 19/299 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP-DLMICDIAMPRMNGL 67 ++++V+DE + R +L + + +G AA+GVDA+ L+ P +LM+ DI MP M+G Sbjct: 694 RVIVVDDEPINRQVLKNHLTLIGCEVREAANGVDAIRLVRDEGPFELMVLDIMMPGMSGY 753 Query: 68 KLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 + +R Q P+L ++A +ADI AL G D L KP RE++ Sbjct: 754 DVCTVLRESYSLYQLPILFLTAKNQIADIIAALEAGGNDYLAKPFDK----RELISRAKN 809 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 VEE+ + A+ + A KL + P + + + G Sbjct: 810 LITLKKAVEEQNKFI----AIQNELGLARKLQYSILPEEAPNVVGIKTEFYYEPMDSIGG 865 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 D A+SE +L DV+ G L + +L+ F + Q + E LL Sbjct: 866 DFFDFHAISETELGVLIADVSGHGIPAALVSAMLKIAF--------STQVRLAKEPSQLL 917 Query: 246 KQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVPLGTL 304 Q+N L Y + E K +I G + + + +P G L Sbjct: 918 NQINSTLLGKMKGAFVTASYVYINLETKEMIHARCGHPPLIINRRGESKAKLSIPQGKL 976 >UniRef50_B0TIH1 Response regulator receiver modulated serine phosphatase n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TIH1_HELMI Length = 394 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 62/317 (19%), Positives = 126/317 (39%), Gaps = 20/317 (6%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 QIL+V+D L+ + G + A +G ALE + PDL++ D+ MP MN Sbjct: 8 SSAQILVVDDVVTNVELMRLQLTRAGYQVLTAFNGEQALESIQRTLPDLILLDVMMPGMN 67 Query: 66 GLKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G ++ ++ PV++++A + D K + G +D + KP + L V + Sbjct: 68 GFEVCAKLKEDPHTQLIPVVLVTALHEVEDRIKGIEAGADDFISKPFNRVELLT-RVKSL 126 Query: 124 LYPSMFNSRVEEEERLFRDWDAMV-DNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 L ++E+ + +A++ + A + Q L P + + Sbjct: 127 LRIRKLYRQLEKSYQEIESKNAILTEELRMARHVQQHLLPTGYPSMERLVFEVAYRPTIE 186 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 G D ++++++ + DV+ G + + +++ + + QE LA G Sbjct: 187 IGGDFYDFITVNKDEVGVFVSDVSGHGVSAAMLTMVISTMMRSITQETLA--------PG 238 Query: 243 ALLKQVNHLLRQA---NLPGQF-PLLVGYYHRELKNLILVSAGLNATL----NTGEHQVQ 294 +L ++N + L G F + + +AG + L ++ + + Sbjct: 239 EVLDRLNLQFGKMVEGELTGTFVTAFSLLVNEATGRVHYANAGHPSPLLLRGDSDDVEKL 298 Query: 295 ISNGVPLGTLGNAYLNQ 311 ++G PLG A Sbjct: 299 DTDGFPLGLFDTAVYES 315 >UniRef50_Q1GCJ7 Phosphoserine phosphatase rsbU n=15 Tax=Rhodobacterales RepID=Q1GCJ7_SILST Length = 423 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 73/351 (20%), Positives = 134/351 (38%), Gaps = 31/351 (8%) Query: 4 PLVG--KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 P+ G +++L+V+D ++ R +L + G V A G DA+++ PDL++ D M Sbjct: 13 PVSGSIRRVLVVDDSRLQRRILVASLKKWGFDVVEAESGEDAMDICRADPPDLILSDWMM 72 Query: 62 PRMNGLKLLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 P MNG++ R +T +++++ ++A+ L G +D L KPV + LR Sbjct: 73 PGMNGIEFCRAFRADSHETYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSS-DELRAR 131 Query: 120 VFACLYPSMFNSRVEEEERLFRD--------WDAMVDNPAAAAKLLQELQPPVQQVISHC 171 + A + E+ R+ + +DA+ + A K+ + L P + + Sbjct: 132 ISAGERILRMQRELFEKNRIVSETLDELQTVYDAIDKDLIQARKIQESLVPELTRAFGAS 191 Query: 172 RVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL 231 VN G ++ + + N L FY +DV+ G ++ A G L Sbjct: 192 EVNLLLKPCGHIGGDLVGMFSPGINRLGFYSIDVSGHGITSA----MMTARLGGYLSSTY 247 Query: 232 AHQN----------QRLPELGALLKQVNHLLR-QANLPGQFPLLVGYYHRELKNLILVSA 280 QN L + +N L + F + + +V A Sbjct: 248 FDQNVGMEKKFNRFYALRPPEEVASVLNARLIADTGIEEYFTMAYCIADLRTGVIKMVQA 307 Query: 281 GLNATL---NTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 G L G + GVP+G + + Q + + + G Sbjct: 308 GHPHPLLLRADGSMEFIGKGGVPVGLVPDVAYEQEEFVMEKGDRLLLYSDG 358 >UniRef50_UPI0000E87E96 Response regulator receiver (CheY) modulated Serine phosphatase n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E96 Length = 387 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 68/315 (21%), Positives = 119/315 (37%), Gaps = 26/315 (8%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALEL-LGGFTPDLMICDI 59 M IL+V+D L+ A G L++ L PDL++ DI Sbjct: 1 MVLTESKPTILVVDDAPANLQLMSGLLQ-ENYRVKAATSGEKGLKIALTSPQPDLILLDI 59 Query: 60 AMPRMNGLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP M+G ++ + ++ R P++ ++A D A L G D ++KPV Sbjct: 60 MMPEMDGYEVCKRLKADERTKGIPIIFLTAKSEAEDEALGLSCGAVDYIIKPVSPP---- 115 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 A +++ L + + AA ++ L P + + +++ Sbjct: 116 ---IAMARIKTHIDLYHQKKALIESQKNLAEEINEAATYIRSLLP--KPLEGKVITSWQH 170 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 + + G L E+ L Y +DV G V AA+L ++ N L + L + + Sbjct: 171 IPCSSLGGDAFGYHWLDEDRLGIYLVDVCGHG---VGAAMLCISVINALRSQTLQNTD-- 225 Query: 238 LPELGALLKQVNHLLRQANL-PGQFPLLVGYYHRELKNLILVSAGLN-ATLNTGEH---- 291 ++LK +N F L G Y ++ + L SAG A L TG Sbjct: 226 FGSPQSVLKGLNEAFPMEKQNNKYFTLWYGVYDKQHQQLTYSSAGHPHAILFTGNSNASK 285 Query: 292 --QVQISNGVPLGTL 304 + G+ +G + Sbjct: 286 EFHALSTAGIAIGVM 300 >UniRef50_B8F901 Response regulator receiver modulated serine phosphatase n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F901_DESAA Length = 445 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 68/330 (20%), Positives = 132/330 (40%), Gaps = 22/330 (6%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG-FTPDLMICDIAMPRM 64 +IL+ +D++ + L + S G V A DG A E+L P L + D MP M Sbjct: 42 TAMKILVADDDRTVQIALKTLLSKWGYEVVTAQDGAQAWEILQDPKAPRLAVIDWMMPGM 101 Query: 65 NGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 G L + IR T +++++A + +++ + L G +D + KP + L+ + A Sbjct: 102 EGPALCKKIRQSSLSSYTYLILLTAKTSKSELMEGLEAGADDFISKPF-NAGELKARITA 160 Query: 123 CLYPSMFNSRVEEEER--------LFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVN 174 ++ + L R D + + AA + Q L P ++ Sbjct: 161 AERILSLEKELKVKNEALSQSNINLSRSNDIITKDLQVAASVQQSLLPAQTGELNGFSFG 220 Query: 175 YRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL--- 231 + A G + + L +N +AF+ LD++ G + ++ + L+ E+ Sbjct: 221 SLFMPCAIVGGDMFNFFPLGDNHIAFFILDISGHGVPAAMLSVTVSKTLTSLIWEEAMTT 280 Query: 232 ---AHQNQRLPELGALLKQVNHLLRQAN-LPGQFPLLVGYYHRELKNLILVSAGLNATL- 286 + + L + ++N L + ++ L F +++G IL AG + Sbjct: 281 GISRNGSGTLLSPEDMAAKLNLLFQSSDTLQAYFTMILGITDVRTGRTILTQAGHPHPIR 340 Query: 287 --NTGEHQVQISNGVPLGTLGNAYLNQLSQ 314 + G + + G P+G L NA + Sbjct: 341 VPSQGALETIGNGGFPVGLLENAEYSGYEF 370 >UniRef50_C4LC82 Response regulator receiver protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LC82_TOLAT Length = 338 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 83/337 (24%), Positives = 150/337 (44%), Gaps = 15/337 (4%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M + ++ILI+EDE VFR L ++ S + GV+ L + F PD+++CD+ Sbjct: 1 MRHSMSQRKILIIEDEAVFRMTLGAYLRSKNFLVLETRSGVEGLAGVAMFQPDVVLCDLH 60 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP M G +++ I R PV+VIS DI +ALR G D L KP+ D N + E + Sbjct: 61 MPGMPGHQVINCIHRRYPYIPVIVISGMVKFDDITRALREGACDYLPKPITDWNVVTEAI 120 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 C S+ N + L + + + A KL+Q +Q P + ++++ + Sbjct: 121 QEC---SLDNGPTSHYKELQQHRYLLRKDDYTATKLMQIMQKPSPMQLGQWQIDF----S 173 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 + P L +D + EN L +++ + A +++ L + L +E ++NQ Sbjct: 174 STTPLLYVDFYPV-ENALMVVIVELYAGMLDVAFVAAMIKFLLDPLYREYKQNENQLFDS 232 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP 300 +L +N + Q+ + + + + +AGL++ H ++ + + Sbjct: 233 PRRVLGYLNSHICQSGILCNINCSALLLSDKTEMVHFANAGLSSP-----HWLKKAANLS 287 Query: 301 LGTL-GNAYLNQLSQRCDAWQCQIWGT-GGRLRLMLS 335 LG L AY N + ++ I L L +S Sbjct: 288 LGLLPEVAYQNFNKEISYPFEMTIQSEIDHELVLKIS 324 >UniRef50_C5CE55 Response regulator receiver modulated serine phosphatase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE55_KOSOT Length = 381 Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats. Identities = 65/283 (22%), Positives = 122/283 (43%), Gaps = 15/283 (5%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K++L+++D++ R LL G V A+G +L+ F PDL++ D+ +P +NGL Sbjct: 2 KRVLVIDDDRTVRMLLKVILKKAGYDVVECANGKTSLKKAESFKPDLILLDLMLPDINGL 61 Query: 68 KLLEHI--RNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 +LLE + P++V++ + + + ALR G D + KP L + Sbjct: 62 QLLETFTSKENLKDVPIIVLTGSTDEENKLTALRSGAVDFITKPFLSEEVLLRVRTQLRI 121 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 S+ +S E E+L D+ AAAAK+ + L P RVN+ + + G Sbjct: 122 HSLIHSLQEAVEKL-------QDDVAAAAKIQKALVPVSTPQGFRDRVNWIYEPSYNVGG 174 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAH--QNQRLPELGA 243 + D L++ Y DV G + A +L +F+ +++ + + EL Sbjct: 175 DIFDFIKLNDEKELIYLADVAGHG----VKAAMLSVIFHRFVEDYVENIKNQGEKLELSK 230 Query: 244 LLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL 286 L++ + + + R+ + + +AG + Sbjct: 231 LIRALEDNFKFDKFDLFITTVAVVIDRKNMRIEIGNAGHPSPF 273 >UniRef50_B9M3D6 Response regulator receiver modulated serine phosphatase n=1 Tax=Geobacter sp. FRC-32 RepID=B9M3D6_GEOSF Length = 383 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 63/304 (20%), Positives = 109/304 (35%), Gaps = 20/304 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT-PDLMICDIAMPRMNGL 67 +IL+V+D LL T+ A +G AL PDL++ DI MP M+G Sbjct: 5 RILLVDDTPENLELLAEILGES-YATISAGNGEAALVAASTQPLPDLILLDINMPDMDGY 63 Query: 68 KLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 ++ ++ + PV+ +S + D KA + G D + KP + + ++ V + Sbjct: 64 EVCRRLKEDPLLREIPVIFLSGLDATQDKVKAFKAGGVDYITKPFQ-FDEMQARVTTHVR 122 Query: 126 PSMFNSRVEEEERLFRD-WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 F S +E++ R +D +D + ++ + L P + + A Sbjct: 123 LRQFQSELEQKGRELQDAYDRLDREFRCVGEVQKSLLPDRLPDVPGFDLASYYCPARRAG 182 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 G D+ ++ + DVT G + + + + L Sbjct: 183 GDYFDVLPVNGKRWGIFVADVTGHGPPAAIVTAMTHVMLHL---------APCKDHPDKL 233 Query: 245 LKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQ-ISNGV 299 L +N L QF G + I SAG L T + G+ Sbjct: 234 LSFLNRTLYGRTQEDQFVTAFYGILDPDSGEFIFSSAGHTPPLLCKKTENSRAVCFDAGL 293 Query: 300 PLGT 303 PLG Sbjct: 294 PLGI 297 >UniRef50_A8GZ93 Response regulator receiver modulated serine phosphatase n=6 Tax=Gammaproteobacteria RepID=A8GZ93_SHEPA Length = 400 Score = 219 bits (559), Expect = 9e-56, Method: Composition-based stats. Identities = 72/324 (22%), Positives = 134/324 (41%), Gaps = 24/324 (7%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT-PDLMICDIAMPRM 64 +GK+IL+VED +V + L+ SS G V A DGVDA+ L L++ D MP++ Sbjct: 1 MGKEILLVEDNKVMQLLMTKMLSSRGYQVVTAFDGVDAIAQLEKHPSIQLVLSDWMMPKL 60 Query: 65 NGLKLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 NG++L H+++ G +++S ++ I + + G +D + K ++N L + A Sbjct: 61 NGIELCYHLKSSDYGRYIFFVLLSGRDDEESIVEGINAGADDFVAKE-TNINELDARLKA 119 Query: 123 CLYP-SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 + N + + L R + + + +A L++ + P + + ++Y + +A Sbjct: 120 GFRSLELHNQLMSKNIELDRAYATIRQDLDSANALIRRMLPSQTEFL-GVELHYTHIPSA 178 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQN------ 235 G +L L E +A Y DV G V +AL+ A+ + H + Sbjct: 179 QIGGDMLGCMQLDEEHVAIYLFDVAGHG---VASALMSFAIQQSISSNSGTHSHVKGKKD 235 Query: 236 ----QRLPELGALLKQVNHL-LRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL---- 286 L + +L ++N L Q N F ++ + + L SAG + Sbjct: 236 TDPFYMLRDPSEVLARLNQSYLSQDNNNLYFTMVYAVLNIKSGLLSYASAGHPPMIWLQT 295 Query: 287 NTGEHQVQISNGVPLGTLGNAYLN 310 + + G A Sbjct: 296 QSQTAHFIEQDSFVAGMFDFASYQ 319 >UniRef50_D0MCI0 Serine phosphatase RsbU regulator of sigma subunit n=13 Tax=Vibrio RepID=D0MCI0_VIBSE Length = 397 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 65/311 (20%), Positives = 133/311 (42%), Gaps = 16/311 (5%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-GFTPDLMICDIAMPRMNG 66 K IL+V+D + + S G + DG ALE+L ++ D+ MP +NG Sbjct: 2 KSILLVDDSKTVLLYISSALEKQGYEVIAVEDGQSALEVLTYRKDIQFVLSDLMMPGING 61 Query: 67 LKLLEHIRNRGDQTPV--LVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 ++L ++++ + + +++S+ + + I K + G +D + K + L+ + A Sbjct: 62 IELCRQLKSQVSERYIFFVLLSSRNDQSSIVKGIDAGADDFVDK-KTSVEELQARIRAGF 120 Query: 125 Y-PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 + N VE + L + + + +A+ L+++L P + I + + +Y + Sbjct: 121 RTLQLHNKLVERNKELDAAYQTIHQDLQSASHLMEQLLP-AESSIQNMQFSYAYKPCSQI 179 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAAL-----LLRALFNGLLQEQLAHQNQRL 238 G +L L E +AFY DV+ G + L A L + L + +L + + Sbjct: 180 GGDMLGYFELDEQHVAFYVFDVSGHGVSSALMAFSIQQTLSQNLGPDSITMELRDGDYCI 239 Query: 239 PELGALLKQVNHLLRQANLPG-QFPLLVGYYHRELKNLILVSAGLNATL----NTGEHQV 293 E A++ ++N +Q F ++ + E L +AG L +T ++ Sbjct: 240 SEPAAVIDRLNRRYQQTRNSQLYFTMVYAILNTESGQLRYCTAGHPKFLVWRASTETTEL 299 Query: 294 QISNGVPLGTL 304 + +G L Sbjct: 300 AGEDNFMIGAL 310 >UniRef50_C0QDZ1 Putative chemotaxis response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDZ1_DESAH Length = 396 Score = 218 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 60/289 (20%), Positives = 109/289 (37%), Gaps = 18/289 (6%) Query: 1 MTQPL-VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDI 59 MT + + + IL+V+D+ V +L LG ++A +G AL + PDL++ DI Sbjct: 15 MTATIKITESILLVDDQPVNLQVLMHTLERLGCKLLVAKNGETALTIAQKARPDLILLDI 74 Query: 60 AMPRMNGLKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP ++G ++ ++ PV+ +SA ++ D + L+LG D + KP + + Sbjct: 75 MMPGIDGFEVCRRLKADPSTQKIPVIFLSALDDTGDKVRGLQLGAVDYVAKPFQP-EEVI 133 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 V L + V+++ D + ++L + L P + R+ Sbjct: 134 ARVNTHLTIHRLSREVQQQ------RDELEHELQVVSQLQRNLLPERLPQVPGLRLAVHY 187 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 + G D L LA D + + ALF + Sbjct: 188 ETSRYAGGDYYDFMTLPGGLLAVLIADAEGHSAPAAVMMAMTCALFRS--------CSTG 239 Query: 238 LPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL 286 L E +L +N L + N + Y + L + AG + Sbjct: 240 LAEPDRMLSFINENLCKVNRDSFVTAVYAVYDPARRTLRIACAGHPLPI 288 >UniRef50_Q608Q0 Response regulator n=1 Tax=Methylococcus capsulatus RepID=Q608Q0_METCA Length = 391 Score = 218 bits (556), Expect = 2e-55, Method: Composition-based stats. Identities = 70/332 (21%), Positives = 130/332 (39%), Gaps = 23/332 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +IL+V+D+ + + + LG A DG +ALE + +I D MP +NG Sbjct: 1 MRILLVDDDPIAVLAVAVYLRKLGYEVTSARDGREALERFRSQRFEFVISDWNMPHLNGE 60 Query: 68 KLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 +L +R+ ++++ ++ + + + G +D L+KPV D LR + A Sbjct: 61 ELCRQVRSLKLPHYVYFILLTGRDDKDSLLRGMEAGADDFLVKPV-DREELRARIRAGER 119 Query: 126 PSMFNSRVEEEERLFRD--------WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 ++++ RL D + + ++ A AA + + L P + V Sbjct: 120 ILRLEQQLDQRGRLLEDMNRELKQAYQTIRNDLATAAAIQKSLLPEP-WTLPDLEVRSLF 178 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAAL-----LLRALFNGLLQEQLA 232 + + G + L + + + LDV+ G + L ++ LL++ + E Sbjct: 179 VASDFLAGDMFGYFPLDDRRVGLFQLDVSGHGVSAALISVALSKCLLQSRSLDVTAEGPP 238 Query: 233 HQNQRLPELGALLKQVNHLL-RQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---- 286 +L+++N Q F ++ RE L L +AG L Sbjct: 239 APTCGSLPPNRMLEELNRFFAGQPEANSYFATMIYALLDRETGRLDLSTAGHPPPLMWKG 298 Query: 287 NTGEHQVQISNGVPLGTLGNAYLNQLSQRCDA 318 TG+ G+PLG L + S R A Sbjct: 299 ETGDIVESGVRGLPLGVLADRRYACESHRLAA 330 >UniRef50_A4U5H4 Two-component response regulator n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U5H4_9PROT Length = 644 Score = 217 bits (554), Expect = 3e-55, Method: Composition-based stats. Identities = 78/332 (23%), Positives = 125/332 (37%), Gaps = 28/332 (8%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGA-TTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +++V+DE++ R+LL G T V A DG+D L L PDL+I DI MP ++G Sbjct: 21 TVMVVDDEEINRALLAGIARRDGIGTIVQAVDGLDCLHKLETVQPDLIILDIVMPNLDGF 80 Query: 68 KLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 IR P+LV +A D+ + G DV++KP++ + A L Sbjct: 81 ATCARIRAMPEWSDIPILVQTALTTPQDVLACFQAGASDVVVKPIRPAE-----LTARLR 135 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNY------RQLV 179 + N R+ R RD + + A+ +Q P + R + + Sbjct: 136 VHLENRRM---LRTLRDANQRIHKEMLGAREMQRTLFPSATALDQLRAEHGLCIEGKVEP 192 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 G + + LS+ +A D + G L+ AL L ++ Q + Sbjct: 193 LDGVGGDIWGLHPLSDTLVAVMVADFSGHG--------LMAALNTFWLHAFVSKQAAAMR 244 Query: 240 ELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLNTGEHQVQI--S 296 + LK +N LR + G F G E L AG + + + Sbjct: 245 QPAEFLKLLNGALRANLMRGHFATFFFGLIDLERDELHWAGAGAPKPILVLNDEFHELDT 304 Query: 297 NGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 G+PLG A S C + + G Sbjct: 305 TGLPLGLTDRAIYGSHSVAFPPGACLLVFSDG 336 >UniRef50_B8G3T7 Response regulator receiver modulated serine phosphatase n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G3T7_CHLAD Length = 385 Score = 216 bits (551), Expect = 8e-55, Method: Composition-based stats. Identities = 66/313 (21%), Positives = 119/313 (38%), Gaps = 15/313 (4%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M L G +ILI++D + R LL G + A+ G LE D+++ D+ Sbjct: 1 MADQLTG-RILIIDDSEHNRYLLTRQLERRGHSIATASHGRQGLEYAQREPFDVILLDLM 59 Query: 61 MPRMNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP M+G +L+ ++ + PV+VISA + D+ + + G ED L KP L Sbjct: 60 MPEMDGFTVLDQLKRNPQTHHIPVIVISAINEIDDVVRCIEAGAEDYLTKPFNQ-TLLYA 118 Query: 119 MVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQL 178 + ACL R+ + E+ + +A+ + + P ++ + + Sbjct: 119 KINACLERK----RLRDSEQAY--LNAIRYELELGRRTQADFLPTSLPHLTGWEITAAFV 172 Query: 179 VAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRL 238 A + G D L + L + DV G L L R+L +++ + L Sbjct: 173 PAREVAGDFYDAFLLPDQRLVCFLGDVCDKGVGAALFMALTRSLLRAFIEQAATNGTDPL 232 Query: 239 PELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQI 295 + + + R + + + V+AG L G I Sbjct: 233 RAVAMTNEYIARHHRANRTFS--TIFCIMFEPQSDLARYVNAGHPEPLIIRADGSVSHLI 290 Query: 296 SNGVPLGTLGNAY 308 + G +G + +A Sbjct: 291 TTGPAVGWIADAR 303 >UniRef50_A5UZS1 Response regulator receiver protein n=3 Tax=Bacteria RepID=A5UZS1_ROSS1 Length = 391 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 128/332 (38%), Gaps = 25/332 (7%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 ++IL+V+D+ LL + ++ G AA G +ALELL D++ DI++P ++GL Sbjct: 16 RRILVVDDDPDINRLLRARLTARGYEVSTAASGEEALELLSETPADIVFLDISLPGISGL 75 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 LE +R RG T V++ +A + +ALR G D L KP + L + Sbjct: 76 HTLEEVRRRGLDTAVIMTTAFGSEQIAVEALRQGANDYLRKPFESDEF-----RRVLERT 130 Query: 128 MFNSRVEEEERLFR-----DWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 + +E + R+ R + A AA++ L P +S ++ + A D Sbjct: 131 VQRLELERQNRVLRQHLEAHHRRLKSELARAAEVQARLLPQTAPALSGFQLAAECIPARD 190 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 G D + L+F+ DV G + L +RA+ +++ Sbjct: 191 VGGDFYDWQQPQPHLLSFWLCDVMGKGLDAALLMATVRAVMRAVVRHS---------PPA 241 Query: 243 ALLKQVNHLLRQANLPG--QFPLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQIS- 296 ++ V H L + L + L + AG G + Sbjct: 242 EAMRYVTHALIDDLVQSGRFVTLFLAQLDTRSGRLASIDAGHGLAFVRRADGTVETLDDR 301 Query: 297 NGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 G+PLG L + +Q I + G Sbjct: 302 RGLPLGVLPDEQYDQRETVLAPGDALIVYSDG 333 >UniRef50_Q2W3W2 Serine phosphatase RsbU n=2 Tax=Magnetospirillum RepID=Q2W3W2_MAGSA Length = 390 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 84/324 (25%), Positives = 140/324 (43%), Gaps = 27/324 (8%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGAT-TVLAADGVDALELLGGFTPDLMICDIAMP 62 L ++L+VED ++ R + S+G T A DG + LE + F PD+++ D+ MP Sbjct: 10 DLAQAKVLVVEDNEMNRIFACAVLESMGLTNVECARDGREGLEKVESFAPDIVLLDLMMP 69 Query: 63 RMNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MNG + L +R R PVLV+SA + G D + KP+ D L V Sbjct: 70 VMNGEQFLVALRADPRYRALPVLVLSAVIDQTTRNALFAAGANDYIGKPI-DRRELVARV 128 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVIS-----HCRVNY 175 L + + + R +RD A+ + A+ + L P Q+ +N Sbjct: 129 EVHLRSHLLLADL----RRYRDRLAV--DLRMASGMQNALLPGPAQMREARDRYGLSINA 182 Query: 176 RQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQN 235 + + G + + + ++ LA Y +D + G +AA + + LLQ+ A Sbjct: 183 VFNPSTELGGDLWGLVPVDDHRLALYTVDFSGHG----VAASINTFRLHLLLQDLDAQMG 238 Query: 236 QRLPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEH 291 A+L++VN L+Q GQF + + R+ + L LV+AG A + GE Sbjct: 239 F----PDAVLEKVNVTLKQLLPRGQFATMTLVVIDRQERTLSLVNAGGPAPILVEPGGEP 294 Query: 292 QVQISNGVPLGTLGNAYLNQLSQR 315 + G+PLG A ++ Sbjct: 295 HLVGGVGLPLGISLEARYELVTMP 318 >UniRef50_Q07SD0 Response regulator receiver modulated serine phosphatase n=3 Tax=Bradyrhizobiaceae RepID=Q07SD0_RHOP5 Length = 441 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 80/321 (24%), Positives = 130/321 (40%), Gaps = 29/321 (9%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGA-TTVLAADGVDALELLGGFTPDLMICDIA 60 ++ + +IL+V+D+ + LL + A G+ ALE++ F PDLM+ D+ Sbjct: 20 SRSIFESRILVVDDDPMACRLLATILKKHQFANVRAAEGGISALEMIDSFRPDLMLLDMQ 79 Query: 61 MPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP ++GL++ E +R R D P+LV +AT + ++ G D L KP+ L Sbjct: 80 MPDLSGLEVCERVRARPDLVDMPILVQTATVDRKEMGMLFMAGASDFLSKPINP-AELMS 138 Query: 119 MVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVI-----SHCRV 173 V L + R +RD + AA ++ EL P Q + R+ Sbjct: 139 RVAVHLERRTLLREL----RDYRDRTS--QELDAAQRMQAELLPTPCQQQQLAEDAGLRI 192 Query: 174 NYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAH 233 +++ G + + L+++ + D T G L L AL + Sbjct: 193 GSFAQPSSEIGGDLWGMLPLNQDSFGIFVADFTGHGVTAALNTFRLHALIHEYRSLH--- 249 Query: 234 QNQRLPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLNT---- 288 + AL+ +N L + PGQF L L VSAG + + Sbjct: 250 -----NDPTALVSMLNERLCRLLTPGQFATFLYLIVDHRADRLRFVSAGAPPPIVSEGLR 304 Query: 289 GEHQVQISNGVPLGTL-GNAY 308 G + + GVPLG G AY Sbjct: 305 GPSTIIEAAGVPLGVARGVAY 325 >UniRef50_C4XP67 Response regulator receiver protein n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XP67_DESMR Length = 389 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 61/285 (21%), Positives = 116/285 (40%), Gaps = 12/285 (4%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT-PDLMICDIAMPRMNG 66 +ILI ED+ R +L LG V +G++A + + P L I D MP ++G Sbjct: 1 MRILIAEDDPASRKILTVCLEKLGYQVVATTNGLEAWQAMQQADAPKLAILDWMMPEIDG 60 Query: 67 LKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +++ +R Q ++++SA DIAK L G +D L KP L L+ + + Sbjct: 61 VEVCRRLRAINARQQPYLILLSALGTKEDIAKGLDAGADDYLTKPFNVL-ELQARIKVGV 119 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 +E + RL + + + + AA ++ + L P + ++ + Sbjct: 120 RL------LEMQARLRQSMETIEASLLAAGEIQKSLLPKHFIGVGSLEFAWQFVPCDAIG 173 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQ--RLPELG 242 G V +I L + Y +DV G + ++L+ L N H + R+ E Sbjct: 174 GDVFNIVPLDAQRVGLYMVDVAGHGPAAAMVSVLVYQLLNATTGILADHTVKPPRILEPE 233 Query: 243 ALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN 287 +L+ ++ F ++ ++ L +AG + + Sbjct: 234 EVLRILDGEFPLMRFKRHFTIVYAVFNHATGVLTYSNAGHCSPMV 278 >UniRef50_A1WTI7 Response regulator receiver protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WTI7_HALHL Length = 395 Score = 213 bits (544), Expect = 5e-54, Method: Composition-based stats. Identities = 69/305 (22%), Positives = 121/305 (39%), Gaps = 19/305 (6%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT-PDLMICDIAMPRMNGLK 68 +L+V+DE + LL ++A G AL+++ PDL++ DI MP ++G Sbjct: 14 VLVVDDEPINLELLGRLLGDA-YRVLVARSGEQALDIVARERLPDLVLLDITMPGISGYD 72 Query: 69 LLEHI----RNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +L+ + R RG PV+ ISA + D A L G D + KP +R V A + Sbjct: 73 VLDALQGEPRTRG--VPVIFISARGDWEDEADGLARGAVDYITKPFNS-AVVRARVGAHV 129 Query: 125 YPSMFNSRVEEEERLFRDWDA-MVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 + + + R + ++ A+++ Q L P + +++ +A Sbjct: 130 KLKVRSDLLAANYRQLEAQQQRIEEDLRVASRIQQSLLPSAPPPGAGYALDWYYRPSAGL 189 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGA 243 G + L + L Y LDV+ G + L + + + E +R A Sbjct: 190 GGDLFVTIPLEDGRLVLYMLDVSGHGVSAALVSFSVAQSIRQWVAE------RRQVSPAA 243 Query: 244 LLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGVP 300 LL ++ F L+V Y + + +AG L G + G+P Sbjct: 244 LLDALDAEYPLERFDKFFTLIVLVYDPAAREIRYANAGHPPGLLIRQRGGSIPLEAGGLP 303 Query: 301 LGTLG 305 +G G Sbjct: 304 VGIGG 308 >UniRef50_B6AT92 Response regulator n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6AT92_9RHOB Length = 428 Score = 213 bits (542), Expect = 1e-53, Method: Composition-based stats. Identities = 70/343 (20%), Positives = 135/343 (39%), Gaps = 21/343 (6%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + ++LIV+D ++ R ++ + G A GV AL + + PD+++ D MP M+ Sbjct: 18 MNIRVLIVDDSRLQRKIISASLLRRGYDVREADSGVSALTVCAEWPPDVVLSDWMMPEMD 77 Query: 66 GLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 GL+ + + R +++++ ++A+ L+ G +D L KPV L LR + A Sbjct: 78 GLEFCQKFKALPREGYGYFILLTSKSAKDEVAQGLQCGADDFLTKPVNGL-ELRARLAAG 136 Query: 124 LYPSMFNSRV--------EEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNY 175 + E E+L D++ + A KL Q L + +++ Sbjct: 137 ERIIQMQRALLDQTHIVSETLEQLRTVHDSINLDLIEAKKLQQSLVREKHRSFEGADLSF 196 Query: 176 RQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ----- 230 A G ++ +S+ D+ F+ +DV+ G + L L EQ Sbjct: 197 VLHPAGHVGGDLVGYFPVSKTDVGFFAIDVSGHGVSSALMTARLAGYLTSPSPEQNIALT 256 Query: 231 -LAHQNQRLPELGALLKQVNHL-LRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN- 287 + + L ++ +N + L + F +++ + E L AG L Sbjct: 257 FEEGDSIGVRPLSDVVVDLNRIVLEEMETDHYFTVILALANMETGQTTLCQAGHPHPLVR 316 Query: 288 --TGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 GE + + G+P+G +A + I + G Sbjct: 317 RANGEIEQDGTGGLPVGLFPDAEFEEFQLTLKPGDQLILASDG 359 >UniRef50_C4XPV8 Response regulator receiver protein n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XPV8_DESMR Length = 384 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 53/283 (18%), Positives = 116/283 (40%), Gaps = 12/283 (4%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++LIV+DE++ +L + + + ++A DG A++L PDL++ DI MP M+G + Sbjct: 3 KVLIVDDERINIHILSAALKND-HSVIIAIDGTTAIDLALSERPDLILLDIMMPGMDGYE 61 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 ++ P++ I+A + + L G D + KP ++ ++ V + Sbjct: 62 ACSKLKASPATRDIPIIFITALSDAKSESHGLECGAIDYITKPF-NVALVKSRVKNHVEL 120 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 + + ++ A+ + +A + + L P +Y+ G Sbjct: 121 KIARDLLALKQ------VAIDEALRSAGLIQKSLLPKKLPNFKSVEFSYKFQPCNAIGGD 174 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAH--QNQRLPELGAL 244 +L++ L ++ + FY +DV+ G + + A+L+ L N L + R+ + Sbjct: 175 ILNVLCLDDSHIGFYLVDVSGHGPSSAMIAVLVYQLMNPFTGILLDNFTIPPRVRSPEEV 234 Query: 245 LKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN 287 L ++ F ++ + L +A + L Sbjct: 235 LNILDKEFPLMRFKKHFTIIYAILNITTGLLTYSNAAHCSPLV 277 >UniRef50_D0RPA8 Regulatory components of sensory transduction system n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPA8_9RICK Length = 536 Score = 212 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 67/319 (21%), Positives = 130/319 (40%), Gaps = 38/319 (11%) Query: 1 MTQPLVGK--------QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP 52 M +PL + +ILIV+D + +++ G T+ DGV+A+ L Sbjct: 158 MIKPLAKQDKNNLITGKILIVDDNKSNCEMIERQLQREGHKTMTCFDGVEAINELNKSDY 217 Query: 53 DLMICDIAMPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 D ++ D+ MPR NG ++L ++ PV++IS + I + + GV++ L KP+ Sbjct: 218 DTVLLDVLMPRKNGYEVLMEMKQSFKLKDIPVIMISGFKEEDTIVRCIESGVDEYLTKPI 277 Query: 111 KDLNRLREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISH 170 L+ +++ L F R + + AA + + L P + Sbjct: 278 NS-TLLKAKIYSSLERKKFRDREKH-------------DLQVAADVQKSLIPSEAYFPDN 323 Query: 171 CRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ 230 + + A G D + + AF DV+ G + + ALF L + + Sbjct: 324 FYAS--NIAAKGVSGDFYDCIDIDSDRYAFILADVSGKGMHAGILMAKTSALFRSLTKIE 381 Query: 231 LAHQNQRLPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLNTG 289 + + +VN L + + G F L++G Y++++K + ++AG + Sbjct: 382 --------KNIQKIAWRVNKELCETSSQGMFVTLVMGIYYKKIKAIEFINAGHEPVMIAK 433 Query: 290 EHQV---QISNGVPLGTLG 305 ++ S P+G + Sbjct: 434 DNGSFVDLESKSPPMGMME 452 >UniRef50_A8FXH7 Response regulator receiver modulated serine phosphatase n=3 Tax=Shewanella RepID=A8FXH7_SHESH Length = 470 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 63/334 (18%), Positives = 125/334 (37%), Gaps = 19/334 (5%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 G +L+VED R + +G + G +A+E D++I D MP M G Sbjct: 18 GLSVLVVEDTHSERCFITHLLEMMGLKVTSCSSGEEAIESYQQEKADMIISDWRMPGMTG 77 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +L ++++N +++++A + G +D L KP + L+ V A Sbjct: 78 PELCQYLKNIDPSLYIILLTANNQTKHTVIGIESGADDFLTKPFIP-SILKARVLAGARI 136 Query: 127 SMFNSRVEEEE--------RLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQL 178 ++E + + + +AAKL L P + + ++ + Sbjct: 137 VNMQRQLENRNSELNTSLTKEQAYLQQIQKDIDSAAKLQGSLLPTSSTLQNGWKLATQFQ 196 Query: 179 VAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRL 238 A + G + + ++ L FY LDVT G + A++ L L + Sbjct: 197 PAQELAGDIFQCLEIDDSHLGFYLLDVTGHG---IAASMQSFTLAQRL---SCNSCDWAS 250 Query: 239 PELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQ 294 + ++ Q+N G+F L++G + + L AG + + Sbjct: 251 LDPALIVTQLNADFEDPEHSGRFATLVLGVVNTTSGKVKLTIAGHPLPILIKGDETEVMD 310 Query: 295 ISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 + +G+PLG + + + Q + + G Sbjct: 311 LISGIPLGIDSHYHYEFNTFLLSPEQQLLLYSDG 344 >UniRef50_UPI00016C38B1 response regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C38B1 Length = 386 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 73/326 (22%), Positives = 139/326 (42%), Gaps = 21/326 (6%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLG-ATTVLAADGVDALELLGGFTPDLMICDI 59 M +P ++L+V+D+ + + + D +A++ F P +++ D+ Sbjct: 1 MAEPHP-IKVLLVDDQPMVGETVRRMLADEPLVEFRYCPDPANAIDTANAFKPTVILQDL 59 Query: 60 AMPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP ++GL+L+++ R + P++V+S+ E AKA LG D ++K +RL Sbjct: 60 VMPDIDGLQLVKYFRANSGTREVPLVVLSSKEEPVVKAKAFALGANDYMVK---LPDRL- 115 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAA----AAKLLQELQPPVQQVISHCRV 173 E++ Y S + E +R+ A AA AA+ +Q L PP ++ Sbjct: 116 EVLARVRYHSRGYVALLERNEAYRELAATQREMAAELSRAARYVQSLLPPPLSS-GPVQI 174 Query: 174 NYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAH 233 ++ + + G + + + LA Y LDV+ G V +ALL + N L + Sbjct: 175 AWKFVPSTQLAGDMFGYRWIDKEHLALYLLDVSGHG---VGSALLAVSAGNVLSANSIPG 231 Query: 234 QNQRLPELGALLKQVNHLLRQANLPG-QFPLLVGYYHRELKNLILVSAGLNA--TLNTGE 290 + R + GA++ ++N + + G F + G YH + L +AG L+ G Sbjct: 232 ADPR--DPGAVVTKLNDMFQMDRQDGKYFTIWYGVYHAANRTLAYCNAGHPPALLLSGGT 289 Query: 291 HQVQISNGVPLGTLGNAYLNQLSQRC 316 + +G + + S Sbjct: 290 LHSLEAEAPAVGMMPEMPYDTKSVPV 315 >UniRef50_A3WMP1 Response regulator of sigma subunit, serine phosphatase (CheY-RsbU) n=2 Tax=Idiomarina RepID=A3WMP1_9GAMM Length = 333 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 60/278 (21%), Positives = 128/278 (46%), Gaps = 2/278 (0%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + K +L++ED++VF+S+++ + G + TPD+++CD+ +P + Sbjct: 1 MSQKHVLLIEDDRVFQSVVEQFLIQQNYAVHCVEYGEQGVSWCQQNTPDIVLCDLMLPDI 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 NGL+++E + + PV+VISA+++M DI +A+RLG D L+KP+ L+ + + + CL Sbjct: 61 NGLEVIERLLSLAPHLPVIVISASDDMGDIREAVRLGAWDYLVKPIDRLDTITQAIEHCL 120 Query: 125 -YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 + + V + L + + + A+L +L + + Q+ A + Sbjct: 121 QRHRLEETYVSDIWELDSHINQLYQDDHIVARLANDLLAKQPLNVGDYHIES-QVAAGAE 179 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGA 243 + +D L+E + ++ L+L+ L L+++ LA + + + + Sbjct: 180 ANIWIDYRPLTEGRVLIVMATAHSQTEQNLIPLLVLKTLIAPLIRQHLAGSDDTILDPRS 239 Query: 244 LLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAG 281 L++ +N L + + F + E G Sbjct: 240 LVQHINFELCHSRVRTAFDGVFAVLDTEQHAFRWTQVG 277 >UniRef50_A0KWS5 Response regulator receiver modulated serine phosphatase n=1 Tax=Shewanella sp. ANA-3 RepID=A0KWS5_SHESA Length = 411 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 75/331 (22%), Positives = 135/331 (40%), Gaps = 20/331 (6%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+VED R + G ++G AL+ L +++ D MP M+G++L Sbjct: 16 VLVVEDTDCERFYITHLLRQFGWLVESRSNGKAALDYLQQNEVHILVSDWRMPEMSGIEL 75 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 + ++N V++++A ADI + G +D + KP L+ + A + Sbjct: 76 CQIVKNNHLPPFVILLTANNQTADIVLGIEAGADDFICKPFLP-ELLKVRMLAAMRIVQL 134 Query: 130 NSRVEEEERLFRD--------WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 + +L + + + +AAK+ +EL P + + ++++ A+ Sbjct: 135 QHNLSRNIQLLQQGLAKESALLSTIKQDLFSAAKVQRELLPRSKTLPRDWQLHHEFQPAS 194 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPEL 241 G + L ++ L FY +D G V AAL +L L E+ + Sbjct: 195 YLAGDLYQCFDLGDDQLGFYLIDAAGHG---VAAALQSVSLAQRLSMER---TDWCGLSP 248 Query: 242 GALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISN 297 ++ QVN L + G+F LL+G + L L SAG A L T + + Sbjct: 249 QEIVNQVNRELSDPDNTGRFVTLLLGKINTLTGELRLCSAGHPAPLLLTETSCEPLPLDT 308 Query: 298 GVPLGTLG-NAYLNQLSQRCDAWQCQIWGTG 327 +PLG G Y +QL + ++ G Sbjct: 309 ELPLGIHGAVQYQDQLVTLLPGSRLLLFSDG 339 >UniRef50_Q1IMF3 Response regulator receiver modulated serine phosphatase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMF3_ACIBL Length = 384 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 64/335 (19%), Positives = 115/335 (34%), Gaps = 23/335 (6%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL-GGFTPDLMICDI 59 M K IL V+DE + S +A +G A+EL PDL++ D+ Sbjct: 1 MANTDEKKVILAVDDEPQNLEIAYSILKDT-YKVRIATNGEKAIELAVATPHPDLILLDV 59 Query: 60 AMPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP +NG ++ ++ PV+ ++ +A+ K +G D + KP L ++ Sbjct: 60 MMPGINGYEVCARLKENAATKDIPVIFLTGQTEVAEETKGFAVGAADYIHKPFSPL-VVQ 118 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 V M S ++++ + + A + + P ++ + R Sbjct: 119 ARVN------MHMSLRTAQKQIAEQLKRIHEEMECARNIQLSIIPREVPKLAGLDIAARY 172 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 + G D + + DV+ G L + +L+ F+ Q Q Sbjct: 173 IPMTAVAGDFYDFIVPDDKHVGVLVADVSGHGMPAALISSMLKIAFHA--------QEQN 224 Query: 238 LPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL----NTGEHQV 293 + + +L +N L Y E K L AG L GE + Sbjct: 225 VADPSKVLDGLNQTLCGKFSDHFVTAAYVYLDLEKKVLRYAGAGHPPILIGSDRNGEVRR 284 Query: 294 QISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 NG+ L + A + + + T G Sbjct: 285 VEENGLILSFMPVAQYASVELPLNIGDRVVLYTDG 319 >UniRef50_Q2W8A5 Serine phosphatase RsbU regulator sigma subunit n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W8A5_MAGSA Length = 537 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 74/304 (24%), Positives = 121/304 (39%), Gaps = 22/304 (7%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+ +D + R +L + S G V ADG+ A+E + G DL++ D+ MP MNG + Sbjct: 160 RVLVADDSKANRDVLVRYLSREGHQVVAVADGLAAVEAVFGQAFDLVLLDMIMPGMNGDE 219 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +L+ I+ PV++ISA + + I + + G ED L KP + LR + ACL Sbjct: 220 VLKAIKADSRLRSLPVIMISALDGLDSIVRCIEAGAEDYLPKPFNRV-LLRARIGACLEK 278 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 R+ E E A+ A ++ + + P V S + A + G Sbjct: 279 K----RLREVE--LSYLQALEKELTIAREVQRSILPKVFPPHSSLAGHGLMDPAREVGGD 332 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 D AL + + DV+ G + ++R QL L Sbjct: 333 FYDFFALDGDRIGIAVGDVSGKGVPAAVYMAMVRT--------QLRATALFGLSPAECLG 384 Query: 247 QVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL----NTGEHQVQISNGVPL 301 ++N L N G F L G + G N + G V +N + + Sbjct: 385 RLNDHLSADNPEGMFVSLFYGIMDCATGVFTYANGGHNWPVVLRAEGGVEWVAGTNDLLV 444 Query: 302 GTLG 305 G +G Sbjct: 445 GVMG 448 >UniRef50_Q1NTC5 Response regulator receiver n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NTC5_9DELT Length = 409 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 70/320 (21%), Positives = 125/320 (39%), Gaps = 28/320 (8%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF-TPDLMICDI 59 M + IL+V+D + ++ + + A G ALEL G PDL++ DI Sbjct: 7 MKEQSARATILVVDDAPINIMIIKGALKNE-WQLLTAESGGQALELARGTPRPDLILLDI 65 Query: 60 AMPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP M+G ++ ++ + PV+ ++A + + L+LG D + KP+K LR Sbjct: 66 MMPGMDGHEVCRQLKADPETRDIPVIFVTAMGDAVSEQQGLQLGAIDYMSKPIKP-EILR 124 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVI--------- 168 V + ++ S +EE R + AAA + + L PP + + Sbjct: 125 VRVRNHIKLKLYQSALEEARR------RAAQDLEAAAVIQRTLLPPAPEALRALALASER 178 Query: 169 -SHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL 227 + ++ G ++ I ++ FY LDVT G AA++ A+ L Sbjct: 179 EPGAQFHWLFSPCEQVGGDLVSITPWDQDHTLFYLLDVTGHG---PQAAMITFAVAQFLQ 235 Query: 228 QEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAG--LNAT 285 E A++ + + F L+ G++H + L +AG Sbjct: 236 PSGHNRHTLPFLEPVAMIAALEKVFPMERFESFFTLIYGHFHHPSRTLTFCNAGQPHPLL 295 Query: 286 LNTGEH--QVQISNGVPLGT 303 L + + NG +G Sbjct: 296 LEGEQPPRPLNKGNGTLVGM 315 >UniRef50_C0GPF4 Response regulator receiver modulated serine phosphatase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GPF4_9DELT Length = 381 Score = 205 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 63/326 (19%), Positives = 114/326 (34%), Gaps = 24/326 (7%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALEL-LGGFTPDLMICDIAMPRMNGL 67 +IL+V+D + +L S A G AL++ G PDL++ DI MP ++G Sbjct: 10 KILVVDDSPLNIRILSSILKDD-YRVQTALHGDKALQIIFGDDPPDLILLDIMMPGIDGY 68 Query: 68 KLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 ++ I+ PV+ ++ ++ D A L LG D + KP ++ V L Sbjct: 69 EVCRRIKADPGTAGIPVIFVTGRSDVEDEAYGLSLGAVDYITKPFH-FPIIKARVKNHLE 127 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 +E + A + L + P + + G Sbjct: 128 LLQAKRSAQEA------HSRLSKELQAMSDLQTSILPSTEYHSQGLYARGFYQPSGLAGG 181 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 D L + L DV+ G ++R +F+ ++ + L LL Sbjct: 182 DYFDYLPLGHDGLRCVIADVSGHGARAAFLMSMVRTVFHF---------DEAVLPLPHLL 232 Query: 246 KQVNHLLRQA--NLPGQFPLLVGYYHRELKNLILVSAGL-NATLNTGEH-QVQISNGVPL 301 + +N L Q ++ L+ L ++AG A L G+ L Sbjct: 233 EALNSQLMQTVGDMGDFVTLMAVDIDPLKNRLEYINAGHCPAFLRDGQSLHEIEPTAALL 292 Query: 302 GTLGNAYLNQLSQRCDAWQCQIWGTG 327 G Y ++ + W+ ++ G Sbjct: 293 GFHQEKYKSRFLECGRDWELFMYTDG 318 >UniRef50_B0TN95 Response regulator receiver modulated serine phosphatase n=2 Tax=Shewanella RepID=B0TN95_SHEHH Length = 411 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 70/348 (20%), Positives = 142/348 (40%), Gaps = 27/348 (7%) Query: 1 MTQPLVGK-----QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLM 55 MT PL + +I++VED R LL + S+G T ++ A++ L D++ Sbjct: 1 MTMPLSLQHIRQYKIILVEDSDSERCLLLNLLDSMGFTAQGFSNAQGAIKHLQNEQVDMV 60 Query: 56 ICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNR 115 I D MP+++G++L + I++ ++++ A + + + G +D + KP Sbjct: 61 ITDWMMPQISGIELCKTIKSMPCSPYTILLTGNNQNAHMIEGIESGADDFIAKPFHS-GV 119 Query: 116 LREMVFACLYPSMFNSRVEEEER-----LFRDWDA---MVDNPAAAAKLLQELQPPVQQV 167 L+ + A L ++ + L ++ D + + + AA+L + L P + Sbjct: 120 LKVRILAGLRIIEMQQKLASHNKTLNQMLVKEQDYLNCLRQDLSLAAQLQRALLPKNSDL 179 Query: 168 ISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL 227 RV A D G + + E + FY LDV+ G A++L L + L Sbjct: 180 TEGWRVTTEFKPAQDLAGDLFQCFNIDEQHIGFYLLDVSGHG---TAASMLSFTLAHHLS 236 Query: 228 QEQLAHQNQRLPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL 286 Q Q+ +L + ++N G+F LL+G + + + L++AG + + Sbjct: 237 SHQKVWQS---LDLALITNKLNREFDDPEQCGRFATLLIGIANTKTGAVELINAGHPSPI 293 Query: 287 NTGEHQVQ------ISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 + + +P+G + + + + + G Sbjct: 294 IVSPQGAKFVDDSYAESQLPIGIDKQHHYQSQHFTMEKEEQLLLYSDG 341 >UniRef50_Q16D14 Response regulator n=7 Tax=Rhodobacteraceae RepID=Q16D14_ROSDO Length = 403 Score = 204 bits (520), Expect = 3e-51, Method: Composition-based stats. Identities = 66/312 (21%), Positives = 126/312 (40%), Gaps = 21/312 (6%) Query: 13 VEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEH 72 V+D ++ R +L S G + AA G +AL++ P+L+I D MP M+G++ + Sbjct: 2 VDDSRLQRKILSSSLVRWGYEVIEAASGEEALDICIAQRPELVISDWVMPMMDGIQFCKE 61 Query: 73 IRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMFN 130 R + +++++ D+A+ L G +D L KPV N LR + A Sbjct: 62 FRELTSDSYGYFILLTSKSEKNDVAEGLDAGADDFLTKPVNG-NELRARITAGERILKMQ 120 Query: 131 SRVEEEER--------LFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 + ++ R L R +D++ ++ A KL + L P + I ++ + Sbjct: 121 LELTQKNRVIGDTLKELQRLYDSLDNDLIEANKLQESLIPERFKQIGDSHLSLLLRSSGH 180 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALF-------NGLLQEQLAHQN 235 G ++ + L Y LDV+ G + L L N L++ Sbjct: 181 VGGDLVGHYPAGDGHLGLYSLDVSGHGISSALMTARLAGYLSGSAPDQNIALEKGEDGSY 240 Query: 236 QRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQ 292 + P A+ +L + F L++ + +++ AG + +GE Sbjct: 241 RSRPLFEAIETLNEMVLDEMETEHYFTLMLADINLRTGEVLIAQAGHPHPVIQRKSGEIT 300 Query: 293 VQISNGVPLGTL 304 + + G P+G + Sbjct: 301 QKGTGGFPVGLM 312 >UniRef50_A3PNQ6 Response regulator receiver protein n=2 Tax=Rhodobacter sphaeroides RepID=A3PNQ6_RHOS1 Length = 418 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 63/323 (19%), Positives = 120/323 (37%), Gaps = 24/323 (7%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 + +LIV+D + R L+ + G AA +AL L G D+++ D MP M+GL Sbjct: 14 RHVLIVDDSRAQRRLVALSLARWGYRVSEAATASEALALCKGGDVDIVLSDWMMPGMSGL 73 Query: 68 KLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 +L IR + +++++ ++ L G +D L+KP + LR + A Sbjct: 74 ELCRRIRALPGEAYCYFILLTSRSGTGEVVDGLDCGADDYLVKPAAP-DELRARLRAGER 132 Query: 126 PSMFNSRVEEEERLFRD--------WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 + + ++ +L ++++ + A +L Q + V Sbjct: 133 VLSMQAELVDKNQLLERAFSELRTIYESLDRDLVEARRLQQSFARDRSRRFGRSSVTLLL 192 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQ- 236 + G + L +A Y +DV+ G L L L +GL + ++ Sbjct: 193 RPSGHVGGDLAGSLDLGTGRIALYSIDVSGHGVASALMTARLAGLLSGLSPDGGVARSDG 252 Query: 237 --------RLPELGALLKQVNHLLRQA-NLPGQFPLLVGYYHRELKNLILVSAGLNATLN 287 L ++N ++ + F + L LV AG + Sbjct: 253 ACGQCAGHDSWPPEILAARLNRMMIADLGVEQYFTMAYAEIDLRSGALALVQAGHPHPVV 312 Query: 288 ---TGEHQVQISNGVPLGTLGNA 307 G ++ G+P+G L +A Sbjct: 313 LRAGGRVELLGQGGLPVGLLPDA 335 >UniRef50_B8GB99 Response regulator receiver modulated diguanylate cyclase n=4 Tax=Bacteria RepID=B8GB99_CHLAD Length = 941 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 66/306 (21%), Positives = 110/306 (35%), Gaps = 12/306 (3%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+D+ LL W G +A G +AL+ + D+ + DI MP ++G+ + Sbjct: 566 VLVVDDDPNICRLLQIWLVDAGYRVEIAQSGFEALQRIAQGGIDVALIDILMPELSGIDV 625 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 L+ +R G + V++ +A + A+R G +D L KP+ L + + Sbjct: 626 LDQVRRAGPEPAVIMTTAFGSEQIAVNAIRHGADDYLRKPIDRQELLVVLERTLTNLRLQ 685 Query: 130 NSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVLD 189 + RL + + AA++ E+ P + + R + A D G D Sbjct: 686 RENAALQRRLEQKRRELEAEIKHAAQIQAEMLPQQMPRLPGYTIAARCIPARDVGGDFYD 745 Query: 190 IAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVN 249 + + L DV G + L RA+ + +E N R VN Sbjct: 746 WHFPAPHLLNLTFGDVMGKGMSAALLMTTTRAVIRSVARETPPEVNMRYA--------VN 797 Query: 250 HLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGVPLGTLG 305 L + F L + L V AG + G G PLG Sbjct: 798 ALYADLDRTSSFVTLCHSQLNLNTHTLAFVDAGHGLGFIRRHGGRFDRLEPRGAPLGIFS 857 Query: 306 NAYLNQ 311 Q Sbjct: 858 QEPYRQ 863 Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 71/163 (43%), Gaps = 10/163 (6%) Query: 1 MTQPLVGK--QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICD 58 MTQ + + +LIV+D + + + G + D ++A LL PDL++ D Sbjct: 244 MTQRTISEPYTVLIVDDSPLMAEVYALALRAAGMQVIATTDPLEAPTLLAEQQPDLILLD 303 Query: 59 IAMPRMNGLKLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL 116 + MP +G +L IR + P++ +S + + AL G +D L KP+ +L L Sbjct: 304 VYMPGCSGQELAAVIRQQPEYHSIPIVFLSGETDRSAQLAALARGGDDFLTKPI-NLEHL 362 Query: 117 REMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQE 159 V + + + + + RD + N + + LL Sbjct: 363 VAAVSSRIQRARAIRSL-----MVRDGLTGLFNHSVSQDLLTR 400 Score = 42.1 bits (98), Expect = 0.027, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 4/109 (3%) Query: 23 LDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM--NGLKLLEHIRNR-GDQ 79 L + G T L + P L+I D+ + +G+ + +R GD+ Sbjct: 142 LARQITYFGYKTEYFTSSAALLAAIAREAPQLVIIDLHLAEGPQSGIAAAAVVHDRYGDR 201 Query: 80 TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 P++ +++ + A+R G +P+ DL L + + ++ Sbjct: 202 IPIIFTASSADFTLRLAAVRAGGRGYFTRPI-DLGVLIDQIDQMTQRTI 249 >UniRef50_Q12BT3 Anti-sigma-factor antagonist (STAS) domain protein n=1 Tax=Polaromonas sp. JS666 RepID=Q12BT3_POLSJ Length = 566 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 82/317 (25%), Positives = 122/317 (38%), Gaps = 29/317 (9%) Query: 11 LIVEDEQVFRSLLDSWFSSLGAT-TVLAADGVDALELLGGFTPD--LMICDIAMPRMNGL 67 L+V+D+ V R ++ G + AADG+ A +L PD L++ DI MPRM+GL Sbjct: 10 LVVDDQPVTRLMVKRALERFGCAPVLEAADGIAAQAILREH-PDVALVLTDIMMPRMDGL 68 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 +LL R +V+S + A+R G D L KP RL EM + Sbjct: 69 ELLHWGRETVPGAIWIVLSGLDTFDSAVAAIRFGAFDFLPKP----PRLEEMEVSVRNAL 124 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQE-----------LQPPVQQVISHCRVNYR 176 + E+ RL + V ++LL+ L P + V Sbjct: 125 ERRRLLAEQARLHAELQRKVRELEEKSELLRRDLERAEVIQRALLPGSPPPVESYCVQAV 184 Query: 177 QLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQ 236 G + D+ L E LAFY D T G + ++L + + E Sbjct: 185 YRPGQHVGGDLYDVVRLGERHLAFYLADATGHGVTSAMLSVLFKQRLVLVDPET-----G 239 Query: 237 RLPELGALLKQVNHLLRQA-NLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEH 291 R A+L VN L Q+ PG F ++G ++ L SAG L E Sbjct: 240 RALAPAAVLDAVNRSLCQSIEAPGLFVTAVIGLLDTVEGSVTLASAGHPPVLHVREGRET 299 Query: 292 QVQISNGVPLGTLGNAY 308 ++ G LG +A Sbjct: 300 RLIRRTGPALGLALDAR 316 >UniRef50_B1ZXR5 Response regulator receiver modulated serine phosphatase n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZXR5_OPITP Length = 602 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 61/306 (19%), Positives = 119/306 (38%), Gaps = 26/306 (8%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + +L+V+DE++ +L +F G +A G +AL L+ DL+I DIAMP M Sbjct: 1 MAKLTVLVVDDEELILHVLLRFFRRRGDRCDVAPGGAEALRLVEAQRYDLVISDIAMPEM 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC- 123 NGL+L+ ++ R +++S DI +AL++GV D + KP+ DL L ++ Sbjct: 61 NGLELIRRVKERQPDAVCILMSGLGTRGDIIEALKIGVFDFIDKPIPDLAALTMVIDRAA 120 Query: 124 ------LYPSMFNSRVEEEE---------------RLFRDWDAMVDNPAAAAKLLQELQP 162 + + E+ +L + + + A ++ + P Sbjct: 121 ESGRLVRERNALLENLREQNTKLEYSLLRLHEAFAQLHQQEAVLESDLQKAQRVQRTFLP 180 Query: 163 PVQQVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRAL 222 +++ G AL++ +A Y +DV G + + + R L Sbjct: 181 AGFPRVANFDFFGYYAPCDQLGGDFFGTLALADGRMALYLVDVAGHGVSAAMITVTFREL 240 Query: 223 FNGLLQEQLAHQNQRLPELGALLKQVNHLLRQA--NLPGQFPLLVGYYHRELKNLILVSA 280 + Q+ E +L+ +N L + P ++ + + +A Sbjct: 241 MRAGHRST--GQDALFGEPARVLRTMNEALIAEHFDPPIYVSMIYAVIDPGSGEVNVAAA 298 Query: 281 GLNATL 286 G + Sbjct: 299 GHPPPI 304 >UniRef50_A8LPF3 Response regulator n=2 Tax=Rhodobacteraceae RepID=A8LPF3_DINSH Length = 422 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 64/345 (18%), Positives = 124/345 (35%), Gaps = 23/345 (6%) Query: 6 VGKQ--ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 G++ +L+V+D ++ R +L G A DG E+ D++I D MP Sbjct: 16 AGRRLQVLVVDDSRLQRRILSMALKKKGYDVFEAEDGNHGFEIFSQNHIDIVISDWMMPG 75 Query: 64 MNGLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVF 121 ++G L +R +++++ +IA+ G +D L KPV + L + Sbjct: 76 LSGPDLCRKLRAVESEHYVYIILLTTKSEKDEIAQGFDAGADDFLSKPVHAV-ELMARIT 134 Query: 122 ACLYPSMFNSRVEEEERLFRD--------WDAMVDNPAAAAKLLQELQPPVQQVISHCRV 173 A + + L + + A+ + A KL Q L + Sbjct: 135 AGERVMRMERELTTKNHLISETLAELKTLYHALDSDLIEAKKLQQSLVRDKTGTFGRADL 194 Query: 174 NYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQ----- 228 + G ++ +++ ++ Y LDV+ G + L L + +G + Sbjct: 195 ALMLKSSGHVGGDLVGFFPINDFEVGLYSLDVSGHGVSSALMTARLAGVLSGSMPGKNIA 254 Query: 229 -EQLAHQNQRLPELGALLKQVNH-LLRQANLPGQFPLLVGYYHRELKNLILVSAGLN--- 283 E + GA+ +N LL + F +++G + + L +V AG Sbjct: 255 IEADGAGQPVGRDPGAVAADLNRLLLEEMETEHYFTIMLGILNIDTGVLRMVQAGHPHGH 314 Query: 284 ATLNTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 N + G+P+G L A + + + G Sbjct: 315 LLRNGAGSDLLGEGGLPIGLLDAADYTSFTATLAPGDRVLLVSDG 359 >UniRef50_C4L3A8 Response regulator receiver modulated serine phosphatase n=2 Tax=Exiguobacterium RepID=C4L3A8_EXISA Length = 370 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 74/306 (24%), Positives = 125/306 (40%), Gaps = 22/306 (7%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL----GGFTPDLMICDIAMPRMN 65 ILIV+DE V +L+ TV + G +AL+LL DL++ D+ MP ++ Sbjct: 3 ILIVDDEPVNTLVLEQLLHQHDYETVSVSSGEEALDLLMAPQAASLYDLVLLDVEMPGIS 62 Query: 66 GLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G++ + IR D + PV+++S IA+ L D KP+K L + A Sbjct: 63 GIETCKRIRQMADFEELPVIMVSGRTEEKQIAEGLDAEASDYTTKPIKITELLARIRSAL 122 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQE-LQPPVQQVISHCRVNYRQLVAAD 182 Y + + R E RL D D A K+ Q L PP+ R Y L + Sbjct: 123 RYKAAVDERKIYEARLQYDLD-------LAQKIQQSALTPPISNEEIDVRALY--LPSKK 173 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 G + ++ + DV G + L + +R++ GL+ + + + Sbjct: 174 LAGDMYAWFQVAPDRYGVIIFDVMGHGVSSALITMGIRSILPGLV----GNVQYPVDVMT 229 Query: 243 ALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGE--HQVQISNGVP 300 L +Q+ L ++ F + Y + + V+AG + T E + + GVP Sbjct: 230 ELNRQMTFLFSGDDMHSYFTAVYCYIDTTKRRIEYVNAGHPPVIVTSEEGNCRLETTGVP 289 Query: 301 LGTLGN 306 +G Sbjct: 290 VGMFEE 295 >UniRef50_B8CL69 Serine phosphatase RsbU, regulator of sigma subunit n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CL69_SHEPW Length = 419 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 136/336 (40%), Gaps = 24/336 (7%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 I++VED R LL + +++G +V ++ A+E L DL+I D MP M+G++L Sbjct: 16 IMLVEDCDSERCLLSALVTAMGHHSVDFSNAESAIEYLKAHHVDLVITDWMMPGMSGIEL 75 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 + ++ D ++++ I + + G +D + KP L+ + A + Sbjct: 76 CKILKQSCDNPYTILLTGNSENTHIVEGINSGADDFVAKPFNS-AVLKARIHAGVRIIEM 134 Query: 130 NSRVEEEERLF--------RDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 S++ ++ + + + + + A AA+L Q L P Q+ +V A Sbjct: 135 QSQLSQKNKSLNQMLLKEQQYLNVVKQDLALAAQLQQALLPNNCQLSQQWQVTCEFKPAH 194 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPEL 241 D G + + + + FY LDV+ G A++ L L Q A Q ++ Sbjct: 195 DLAGDIFQCFNIDDQHIGFYLLDVSGHG---TAASMQSFTLAQSLANNQDAWQA---LDV 248 Query: 242 GALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLNTGEHQ-------- 292 L+ +N G+F +++G + + LV+AG A + Sbjct: 249 CQLINTLNREFDDPQNSGRFATMIIGIANAVTGKVELVNAGHPAPIVISPQHAYFADQLQ 308 Query: 293 VQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 + I+ +PLG N + + + + G Sbjct: 309 LNIAAQLPLGIRKNYQYSSSQLFLSQHEHLLLYSDG 344 >UniRef50_A3JMA6 Response regulator n=2 Tax=Rhodobacterales RepID=A3JMA6_9RHOB Length = 430 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 63/351 (17%), Positives = 124/351 (35%), Gaps = 29/351 (8%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 T +L+V+D + R +L + G AA G +A+ +L++ D M Sbjct: 12 TSAPATLSVLVVDDSKGQRRILSASLKRAGYDVTEAASGEEAVLACQEKQFNLVLSDWIM 71 Query: 62 PRMNGLKLLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 P MNGL + R T +++++ + L +G +D L KPV L Sbjct: 72 PGMNGLDFCKAFREMERDTYGYFILLTSKAEKNAVTLGLDVGADDFLTKPVNG-AELLAR 130 Query: 120 VFACLYPSMFNSRVEEEERLFRD--------WDAMVDNPAAAAKLLQELQPPVQQVISHC 171 + A + + ++ +DA+ + A K + L Q Sbjct: 131 MKAGERILSMEHEKDMQNQMLSKSRDEIQILYDAIDRDLLEAKKFQEALLSEKYQKFGDS 190 Query: 172 RVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL 231 V+ + G ++ ++S+ + Y +DV+ G + L A G L + Sbjct: 191 SVSLYLKSSGRVGGDLVGYYSISDEKIGLYSIDVSGHGISSALMT----ARLAGFLSDGS 246 Query: 232 AHQN----------QRLPELGALLKQVNHL-LRQANLPGQFPLLVGYYHRELKNLILVSA 280 QN R + +N + L + F +L+ ++ + A Sbjct: 247 PDQNVGLIKGKDGIYRARSPEQAVAILNEIVLNDMDTELYFTILLVEADLCTGHMRMSQA 306 Query: 281 GLNATLNT---GEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 G + G + + G+P+G + A + + +A + + G Sbjct: 307 GHPHPVVQRANGTVEFPGNGGLPVGLIPGAEFDSFEVQLEAGDRLLLTSDG 357 >UniRef50_Q310X6 Response regulator receiver (CheY-like) modulated serine phosphatase n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q310X6_DESDG Length = 381 Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 65/298 (21%), Positives = 114/298 (38%), Gaps = 21/298 (7%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILIV+D + R+ L S A +G AL PD+++ D+ MP MNGL++ Sbjct: 7 ILIVDDSRSVRNALASLLRKS-HAIEQAENGEQALASYARNRPDIILLDLNMPGMNGLEV 65 Query: 70 LEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 L IR D+T +L+++A ++ + L LG D L KP D+ LR V Sbjct: 66 LRTIREGFGDDETYILILTADDSSGTKTRGLSLGANDFLSKPF-DIAELRARVGVAERQR 124 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLV 187 ++ + R ++ +V A L +L P + + + + G Sbjct: 125 KLTRQLVDYARRIQNEIDLV------ASLQSKLLPTATPYLQGIHIESLYEPSGEASGDY 178 Query: 188 LDIAALSEND-LAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 D + E + DV+ G ++R +F Q++ +P + Sbjct: 179 YDFFPVQEGRKIRTVVADVSGHGARAAFIMSIVRTVFR-------ITQSRYMPLDETVAL 231 Query: 247 QVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLNTGEHQ--VQISNGVPL 301 NHL+ F + + L ++AG + Q ++ +PL Sbjct: 232 LENHLMDAIGDEEDFVTVFTADVDFTDERLDYINAGHCPGILRQPSQEPQLLTGSMPL 289 >UniRef50_C6C148 Response regulator receiver protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C148_DESAD Length = 397 Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats. Identities = 64/304 (21%), Positives = 116/304 (38%), Gaps = 18/304 (5%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+D R+ L A+DG++ + P +++ D+ MP M+G Sbjct: 16 KILVVDDSATMRNFLTRVLEGD-YDVETASDGLECIAQYMKVKPSVILLDLLMPGMDGFD 74 Query: 69 LLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +++ IRN + ++V++ + A+AL G D L KP + L+ V + Sbjct: 75 VIDKIRNVINDQEVIIIVLTGQDEQEIKARALNSGANDYLTKPFH-VVELKARVGVAIRQ 133 Query: 127 SMFNSRVEEEER-LFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 M +++ + L R +D + D A+L +L P V VI + + G Sbjct: 134 VMLTRQLQAANKSLQRAYDIIDDEVKLVARLQDKLLPTVIPVIEGLDIKSMYRPSGRASG 193 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 D+ L + + DV+ G ++R LF +L L Sbjct: 194 DYYDVFGLKDGVVRVIMADVSGHGPQAAFIMAIVRTLFKA--------DGANHNDLAESL 245 Query: 246 KQVNHLLRQA-NLPGQF-PLLVGYYHRELKNLILVSAGLNATLNTGEHQV---QISNGVP 300 Q+N L F L + +SAG L + ++ +++ P Sbjct: 246 NQINEHLLDLIGKDSYFVTLFAADIDFNKGVMKYMSAGHCPALAMLDGEMSDPLVADVPP 305 Query: 301 LGTL 304 LG Sbjct: 306 LGFF 309 >UniRef50_Q12PI4 Response regulator receiver protein n=22 Tax=Shewanella RepID=Q12PI4_SHEDO Length = 386 Score = 195 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 70/296 (23%), Positives = 121/296 (40%), Gaps = 24/296 (8%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+D+ VFR L+ + S AT AA G LEL D+++ D++MP + GL + Sbjct: 8 VLLVDDDPVFRQLVTDYLISQQATVFQAASGHQGLELFEKKQIDVVVADLSMPGLGGLNM 67 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY---- 125 L+ + P +VIS MAD+ +ALR+G D L+KP+ DL + + + + Sbjct: 68 LKQLIEMDPSIPAIVISGHSVMADVVEALRIGASDYLIKPIPDLFIIGQAIEQAIEDAVN 127 Query: 126 ---------------PSMFNSRVEEEERL----FRDWDAMVDNPAAAAK-LLQELQPPVQ 165 +M S + +L D +++ A AAK + Q+L P Sbjct: 128 QSANANLQSSEESALQTMLESEMGPLNQLSYQELNDNLHLLEQSALAAKSVQQQLFPASN 187 Query: 166 QVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNG 225 +NY D +D + + L Y ++ +LLR+ N Sbjct: 188 VDYPLAEINYSLFKNDDISAYFIDSTMVGDKHLICYMAHFHPEDNSAAFGCVLLRSFVNQ 247 Query: 226 LLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAG 281 L+ + L E +L +N + ++ L Q + + + AG Sbjct: 248 KLKLYRNGLSTTLIEPFNMLSYLNERMVKSGLHMQVDVSYICIELTQYRVAIGQAG 303 >UniRef50_A4WVX0 Response regulator receiver protein n=5 Tax=Rhodobacterales RepID=A4WVX0_RHOS5 Length = 418 Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats. Identities = 62/345 (17%), Positives = 127/345 (36%), Gaps = 24/345 (6%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 + +L+V+D + R LL G AA +AL+L D+++ D MP ++G Sbjct: 13 SRHVLVVDDSRAQRRLLALSLRRWGYRVSEAAGADEALDLCRTAGIDIVLSDWMMPGLSG 72 Query: 67 LKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 L L IR R + +++++ ++ L G +D L+KPV LR + A Sbjct: 73 LDLCRLIRALPRENYCYFILLTSRSGTGEVVDGLDCGADDYLVKPVAS-GELRARLRAGE 131 Query: 125 YPSMFNSRVEEEERLFRD--------WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYR 176 + + + L + ++ + + A KL Q L + + Sbjct: 132 RVLGMQAELVGKNHLLEEAFGELRAVYETLDRDLIEARKLQQSLARDRHRRFGNSTATLL 191 Query: 177 QLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ------ 230 + G + ++ +A Y +DV+ G L L L +G+ ++ Sbjct: 192 MRPSGRVGGDLAGSFEIATGRVAIYSIDVSGHGVASALMTARLAGLLSGVSPDRNFALTG 251 Query: 231 ---LAHQNQRLPELGALLKQVNH-LLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL 286 + ++ + + N +L + + F + + + LV AG + Sbjct: 252 GNCYRCKGRQTWPPDMVASRFNRMMLEELQVDQYFTMAYAEIDLDTGRVELVQAGHPHPV 311 Query: 287 N---TGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 G ++ G+P+G + +A + R + + G Sbjct: 312 VMRADGTIEMLGQGGLPIGLIPDASYERTECRLAPGDRVLLLSDG 356 >UniRef50_C0GT23 Response regulator receiver modulated serine phosphatase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GT23_9DELT Length = 376 Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats. Identities = 68/307 (22%), Positives = 116/307 (37%), Gaps = 23/307 (7%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + ++LI ED + R L + DG +A++ F PD+++ DI MP M Sbjct: 1 MKKVKLLIAEDSSINRKFLIRLLGDE-FEIEESCDGEEAVDKFAAFAPDIVLLDIHMPVM 59 Query: 65 NGLKLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 +GL+++ HIRN +LV++ E+ +AL G D +LKP +RE + A Sbjct: 60 DGLEVIRHIRNTSVDRDVFILVLTGEESTEVKVEALNQGANDFVLKPF-----VREELQA 114 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 + + + EE R + + + A L L P +++ L + Sbjct: 115 RVRVAKRQVLILEELR--KAYAVISTEMDMVADLQARLLPRDGFEFPGIDLDWMYLPSGR 172 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 G D + + L F DV+ G +RA+F + L Sbjct: 173 ASGDYYDFFPVGPDTLRFVVADVSGHGARAAFIMNTVRAIFRMSWRNYFP--------LE 224 Query: 243 ALLKQVNHLLRQA--NLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQ---ISN 297 ++ VN L Q LL + +L ++AG + ++ N Sbjct: 225 QVVGFVNTDLCQIVGGEADFVTLLACDLNLGASSLSYINAGHCPGFFLADQEIMHEAQPN 284 Query: 298 GVPLGTL 304 PLG Sbjct: 285 CRPLGIF 291 >UniRef50_A0LDM2 Response regulator receiver protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LDM2_MAGSM Length = 564 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 61/306 (19%), Positives = 118/306 (38%), Gaps = 18/306 (5%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +ILIV+D+++ ++L G A +G +EL PDL++ DI MP MNG Sbjct: 1 MKILIVDDDRINSTILTRLLEKDGHKVFTAPNGQRGVELFSDERPDLVLMDIRMPLMNGY 60 Query: 68 KLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 + I++ P++ ++A + +AK + G +D L KP L+ + A Sbjct: 61 EAARRIKSLSPNRFVPIIFLTAVTDDEGLAKCIDAGGDDFLTKPFNR-TILQAKIGAMER 119 Query: 126 PSMFNSRVEEEERLF-RDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 + + E++ L R + L ++ + + C ++ + Sbjct: 120 IGQLHGVLREQKELLERHQQTIRQELEVGKHLFSKIVQAGNLLDAPCLQHWTA-PMSLFN 178 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 G +L + L D T G + + AL + +F GL + + L Sbjct: 179 GDLLMASYNPAGGLHIMLGDFTGHGLSAAVGALPISEIFYGLTAQGF--------SISDL 230 Query: 245 LKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLN----ATLNTGEHQVQISNGV 299 + ++N L + F + ++L++ + GL A + + S + Sbjct: 231 VDEMNAKLTEVLPARMFCAACLIEIDPRQQSLLIWNGGLPDILIADASGSIVRRVRSTHL 290 Query: 300 PLGTLG 305 PLG Sbjct: 291 PLGVTH 296 >UniRef50_Q2SBW1 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=4 Tax=Gammaproteobacteria RepID=Q2SBW1_HAHCH Length = 578 Score = 191 bits (486), Expect = 3e-47, Method: Composition-based stats. Identities = 74/313 (23%), Positives = 131/313 (41%), Gaps = 17/313 (5%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILI +D Q R +L + G T A DGVDA+E F PD+++ D MPRM+G + Sbjct: 21 KILIADDNQSDRMILQNIVKKQGHDTATAVDGVDAIEKFSEFRPDIVLLDALMPRMDGFE 80 Query: 69 LLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA-CLY 125 I+ D P++ +++ + +AK L G +D L KP + L+ + A Sbjct: 81 AARKIKLLAGEDLIPIIFLTSLSDAESLAKCLEAGGDDFLSKPYNRI-ILQAKINAFNRM 139 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 M + + + +++ D MV A + + + + + A G Sbjct: 140 RIMHKTLLRQRDQIAEHNDHMVREQQVAKTVFDNVA--HVGCLGANNIKHLLSPLAVFNG 197 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 VL + D T G + A+ L +F G+ + A LG +L Sbjct: 198 DVLLACQKPSGGMHVLLGDFTGHGLPAAIGAMPLAEIFYGMTSKGYA--------LGDIL 249 Query: 246 KQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLN-ATLNTGEHQVQISNG-VPLG 302 ++VN LR+ G F + + E + + + GL L G+ +++++ +PLG Sbjct: 250 REVNQKLRKILPVGFFCCACMAELNFEQEEIEIWIGGLPDCYLVQGDQLIKVASNRLPLG 309 Query: 303 TLGNAYLNQLSQR 315 L + + R Sbjct: 310 ILKGEAFDARTYR 322 >UniRef50_A1AZB3 Response regulator receiver protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1AZB3_PARDP Length = 423 Score = 190 bits (484), Expect = 5e-47, Method: Composition-based stats. Identities = 71/343 (20%), Positives = 125/343 (36%), Gaps = 18/343 (5%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 P + +L+V+D + R L G V AA G +A+ + PD++I D MP Sbjct: 13 PHGWRLVLLVDDSRAQRRTLAVQLIRAGYHVVEAASGDEAMRICLERRPDIVISDWMMPG 72 Query: 64 MNGLKLLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVF 121 +GL+ R +++++ + DIA+ LR G ++ L KPV L + Sbjct: 73 QSGLEFCRRFREMQSDRYGYFILLTSRNDKKDIAEGLRAGADEFLTKPVSGAELLARLSA 132 Query: 122 ACLYPSMFNSRVEEEERL------FRDWDAMVD-NPAAAAKLLQELQPPVQQVISHCRVN 174 + M S RL R+ A +D + A +L Q L ++ Sbjct: 133 SERILRMEESLRSANARLNSTLTRLRETQAAIDRDLREAQRLQQGLVRERHGRYGDFDLS 192 Query: 175 YRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQ 234 A G ++ ++ + + LDV G L L AL +G + +A + Sbjct: 193 LLMRPAGHIGGDLVGFFPINARRVGLFALDVAGHGVASALLCARLAALLSGAADQNIALR 252 Query: 235 NQRL-----PELGALLKQVNH-LLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL-- 286 L +L +N ++ + F ++ L LV AG + Sbjct: 253 ITELGLCDARPPAEILHHLNTLMIEELRTESYFTMVYADLDFLTGALRLVQAGHPHPVLQ 312 Query: 287 -NTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 G + G+P+G +A ++ D + G Sbjct: 313 RADGRIESIGRGGLPVGVFSHAAYEEVQLVLDPGDRLFISSDG 355 >UniRef50_Q0AT15 Response regulator receiver modulated serine phosphatase n=1 Tax=Maricaulis maris MCS10 RepID=Q0AT15_MARMM Length = 394 Score = 190 bits (483), Expect = 6e-47, Method: Composition-based stats. Identities = 72/321 (22%), Positives = 121/321 (37%), Gaps = 26/321 (8%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGAT-TVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 IL+V+D + R L+ S ++ G + A+DGV+ALELL D++I DI MPR +G+ Sbjct: 15 TILVVDDLKSSRLLIGSILNAAGFNNLIFASDGVEALELLEQTPVDMVILDIVMPRKDGI 74 Query: 68 KLLEHIRNR-GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + +R R G P+L+ ++ ++ A A G D++ KP+ E+V Sbjct: 75 SVCREVRERLGLTMPILIQTSLQDADHRATAFDAGASDIVSKPI----HAHEIVSRTR-- 128 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVIS-----HCRVNYRQLVAA 181 + R + L R M D AA + L +V + H R+ + Sbjct: 129 -LHLERRRMIDSLQRYRRRMQDELRAAEAMQVSLLKSDDEVAAIAGPRHARMTTFYKASN 187 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPEL 241 G + + + E + +D++ G + A + L ++ Sbjct: 188 QLGGDLWQVFEIDETRFGIFMVDLSGHGVAAAINAFRVHMLAEDRTHDR--------TSP 239 Query: 242 GALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISN 297 G L VN L Q F G + +AG + G ++ + Sbjct: 240 GDWLTSVNANLCQILPVEHFATAFYGVVDIARGRIEYAAAGAPPPILLDREGGWRLIDGS 299 Query: 298 GVPLGTLGNAYLNQLSQRCDA 318 GV LG A S Sbjct: 300 GVILGCSEGARYETHSTPIRQ 320 >UniRef50_A4U2R5 Stage II sporulation E n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U2R5_9PROT Length = 630 Score = 190 bits (482), Expect = 7e-47, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 116/318 (36%), Gaps = 29/318 (9%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGA-TTVLAADGVDALELLGGFTPDLMICDIA 60 Q ILIV+D +L++ +LG +A DG+ LE + PDL++ D+ Sbjct: 239 RQAFAQVSILIVDDNPFNCRMLEALIQTLGVGHIRVANDGIQGLEAITEHCPDLVLLDVM 298 Query: 61 MPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MPRM+GL++ +R PVL I+A E+ G DV+ KP+ D + + Sbjct: 299 MPRMDGLEMCRRLRTDHALSDLPVLFITALEDAKSRTACFAAGGNDVISKPI-DTDEVLA 357 Query: 119 MVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCR------ 172 V L ++ +++ + V + AA+ Q P + ++ R Sbjct: 358 RVRVHLQNALLMAKL-------NAYRNRVRDEMEAARATQASLVPTDEHLNAIRRRTGLS 410 Query: 173 VNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLA 232 + +++ G + L D + G +F L L+ Sbjct: 411 IQGVVESSSELGGDFWTLFEAGPRHLGVLAADFSGHGLPAAF------NVFR--LHVLLS 462 Query: 233 HQNQRLPELGALLKQVNHLLRQANLPGQFPL-LVGYYHRELKNLILVSAGLNATL---NT 288 +R P ++ Q+N L+ G+F +G L A + Sbjct: 463 RLPRRPPPPALMMAQLNRELKMLLKLGEFAAVFIGLIDLNEGTLTYAGAATPPPVLIDTL 522 Query: 289 GEHQVQISNGVPLGTLGN 306 G G PLG + Sbjct: 523 GRASFLDIAGPPLGAFTD 540 >UniRef50_C0QFH6 Putative two-component response regulator receiver protein (Phosphoserine phosphatase) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFH6_DESAH Length = 373 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 111/310 (35%), Gaps = 25/310 (8%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 IL+V+D V ++ S G + A +G A + PDL++ DI MP +G + Sbjct: 8 TILVVDDNLVNLKFMEMTLSKEGYRVITADNGTSAKTIAVAEKPDLILLDIQMPGGDGFE 67 Query: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 ++ ++ PV+ ++ ++ K LG D + KP L L + Sbjct: 68 VIRFLKETPGTCTIPVIFLTNMTDVDSKLKGFDLGAVDYVTKPFHPLEVLARVATHLKLS 127 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 NS V + R R+ + E+ P + + + + G Sbjct: 128 IATNSLVANQARRLREI----------TEAQNEMLP-LPEDFPRAKFGVYYRALHEAGGD 176 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 DI +S++ ++ D + ++AL LA ++ + +K Sbjct: 177 FYDILNISDHITGYFVADFSGHDIKSSYMTASIKAL--------LAQNSKLVYSPLETMK 228 Query: 247 QVNHLLRQANL-PGQFPLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQISNGVPLG 302 +N +L + + NL ++SAG ++ T ++ +G LG Sbjct: 229 MINDVLVEILSENKYLTACYARLNHATGNLCIISAGHPPVVHVPATRNPEIINMDGDILG 288 Query: 303 TLGNAYLNQL 312 +A Sbjct: 289 MFKDARFGIH 298 >UniRef50_C6BU34 Response regulator receiver modulated serine phosphatase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BU34_DESAD Length = 395 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 62/299 (20%), Positives = 120/299 (40%), Gaps = 12/299 (4%) Query: 10 ILIVEDEQVFRSLLDSWFSSLG-ATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +L+++D+ + + + +D A+ P +++ D+ MP ++G+ Sbjct: 16 VLLIDDQPMVGEAVRRMLAGEDDIDFHFVSDPTKAIPTAEELQPTVILQDLVMPEIDGMT 75 Query: 69 LLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +++ +R ++ P++V+S E A+A LG D L+K + L + + Sbjct: 76 MVKFMRVNSKLKDIPLIVLSTKEEPTTKAEAFALGANDYLVKLPDRIELLARIRYHSKGY 135 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 R E E+L D M A AA + L P + + ++R + +A G Sbjct: 136 INLLQRNEAYEQLRESRDEMRKELAVAADYVTSLLPDPLKE-GDIQADWRFIPSASLGGD 194 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 L ++ A Y LDV G V +ALL + N L + L + + +L+ Sbjct: 195 SFGYHWLDDDHFAMYLLDVCDHG---VGSALLSVSAMNVLRSQTLPDTD--FLKPDKVLE 249 Query: 247 QVNHLLRQANLPG-QFPLLVGYYHRELKNLILVSAGLNA--TLNTGEHQVQISNGVPLG 302 +N + F + G Y + + L S G + GE + + G+ +G Sbjct: 250 ALNDSFQMDQQNNLYFTMWYGVYRKSDRTLTYSSGGHPPALLIAGGEAKQLRTPGMIVG 308 >UniRef50_Q01YK8 Response regulator receiver modulated serine phosphatase n=6 Tax=Bacteria RepID=Q01YK8_SOLUE Length = 395 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 80/340 (23%), Positives = 129/340 (37%), Gaps = 26/340 (7%) Query: 8 KQILIVEDEQVFRSLLDSWFSS---LG-ATTVLAADGVDALELLGGFT-PDLMICDIAMP 62 +QIL+V+DE L+ F G + +G +AL L G D+++ DI MP Sbjct: 10 RQILVVDDEPDLELLVRQRFRRQIREGEFEFFFSHNGEEALVALDGKPTIDVVLSDINMP 69 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 M+GL LL +R R +V+SA +M +I A+ G D L+KP+ D L + Sbjct: 70 VMDGLTLLGKLRERQGCLKAVVVSAYGDMPNIRTAMNRGAIDFLMKPI-DFEDLEITIRK 128 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQP---PVQQVISHCRVNYRQLV 179 L + + + + A+ + AA++ Q + P P ++ + Sbjct: 129 TLDHV---AAIRQSMAVQESLLAIRQELSVAARIQQSILPRTFPPFPARKDFELHASMIP 185 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 A + G + D L E+ L DV+ G L + R L ++L Sbjct: 186 AKEVGGDLFDFFLLDEDHLGLVLGDVSGKGVPAALFMAVSRTLLRATALQKLP------- 238 Query: 240 ELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQ- 294 G L+ VN L N F + G + L + G N G+ + Sbjct: 239 -PGECLQYVNTTLAAQNPSHMFVTMFYGILNTRTGELQFANGGHNPPYVFSADGKVRELP 297 Query: 295 -ISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 NG+ +G L A S + + T G M Sbjct: 298 RNKNGMIVGLLDGAPYQTASHTIAPGEALLVYTDGVTEAM 337 >UniRef50_Q64S15 Sigma factor SigB regulation protein RsbU n=5 Tax=Bacteroides RepID=Q64S15_BACFR Length = 389 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 70/338 (20%), Positives = 130/338 (38%), Gaps = 27/338 (7%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSL----GATTVLAADGVDALE-LLGGFTPDLMICDIA 60 + +IL V+DE LL +F A +G++AL+ LL D+++ DI Sbjct: 1 MAVKILSVDDELDLEVLLTQYFRRQIRKGEYEFAFAHNGLEALQKLLETPDFDIILSDIN 60 Query: 61 MPRMNGLKLLEHIRN-RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 MP M+GL LL + + +++SA +M +I A+ G D KP+ DL+ L Sbjct: 61 MPEMDGLTLLAKVNELKNPAMKCIMVSAYGDMDNIRSAMNKGAFDFATKPI-DLDDLSRT 119 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQ----PPVQQVISHCRVNY 175 + + + + E ++ +++ ++ A A ++ Q + PP ++ + Sbjct: 120 IEKAIEQVRY---IRESQQEHNQLESIKNDLAIAGEIQQTILPRSFPPFPELTEVVNIYA 176 Query: 176 RQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQN 235 A D G D + + + DV+ G +LF + + L Sbjct: 177 SMTPAKDVGGDFYDFFQIDDERIGLVIADVSGKGVPA--------SLFMAVSRTLLRATA 228 Query: 236 QRLPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGL-NATLNTGEHQV 293 R L N LL + +L F + G YH + + +AG L G V Sbjct: 229 LRGVSSAECLTYANKLLCKESLDSMFVTVFYGIYHYKTGMMDYTNAGHNPPYLLRGGRTV 288 Query: 294 Q---ISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 + +++ +G + + + T G Sbjct: 289 ECLPVASNFVVGVFDDIEFESNTLTFGIGDTLLLYTDG 326 >UniRef50_C6BT74 Signal transduction histidine kinase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BT74_DESAD Length = 372 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 73/343 (21%), Positives = 148/343 (43%), Gaps = 49/343 (14%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL ++D++ R + + G + A++G + L++ PD+++ D+ MP M+GL Sbjct: 6 KILTIDDDESVRLSIAHYLEDSGYEVLQASNGHEGLKIFHEQKPDVVLLDLRMPEMDGLS 65 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 +L+ + QTPV+V+S T + D+ +RLG D + KP+ DL L + + Sbjct: 66 VLKQLGQEAPQTPVIVVSGTGSFEDVIATVRLGSWDYIPKPITDLTDLENAILRTRERAR 125 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP-GLV 187 + E ER + + + +L+ ++ ++ A K GLV Sbjct: 126 L---LVENERYKEELECKIRERTEELQLMNKVL-------------SEEITARKKSEGLV 169 Query: 188 LDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQ 247 A+L+E ++ + + V+++LL +L +G + E LL++ Sbjct: 170 R--ASLAEKEVMLKEIHHRVKNNLQVISSLL--SLQSGYTDD---------KEASNLLRE 216 Query: 248 VNHLLRQANLPGQ--------FPLLVGYYHRELKNLIL----VSAGLNATLNTGEHQVQI 295 H +R ++ + + + Y L N +L V +N T N + + I Sbjct: 217 CQHRVRSMSMLHEKLYRSEDLSRIDMNEYALTLINFLLRSYSVDGKVNPTYNINDIHMGI 276 Query: 296 SNGVPLGTLGNAYL-NQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 + +P G + N + N L+ + +GG L++ + + Sbjct: 277 DSAIPCGLIINELVSNALTHAYE------MNSGGELKVSMHRD 313 >UniRef50_D1R4M5 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4M5_9CHLA Length = 401 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 67/334 (20%), Positives = 132/334 (39%), Gaps = 33/334 (9%) Query: 1 MTQPLVGK-QILIVEDEQVFRSLLDSWF-SSLGATTVLAADGVDALELLGGFTPDLMICD 58 ++QP K +L+++D+ + + S + ++ AL P +++ D Sbjct: 9 LSQPPSKKITVLLIDDQAIVAEAIQSMIGAEKDIDFYYCSEPTQALRKATEVAPTVILQD 68 Query: 59 IAMPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL 116 + MP ++GL L+++ R Q P++V+S+ E+ A+A LG D ++K + D L Sbjct: 69 LVMPEIDGLMLVKYFRANPATSQVPMIVLSSKEDPKVKAEAFALGANDYMVK-LPDKVEL 127 Query: 117 REMVF-------ACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVIS 169 + L +R+EE L A AA+ ++ L P + + Sbjct: 128 LARIRYHSSNYIRLLERDEAYARLEESRNLLNA------ELAEAAQYVRSLLPKCLE--N 179 Query: 170 HCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQE 229 R ++ + + G L E+ Y LDV G + AALL ++ N L + Sbjct: 180 PVRTSWEFIPSIGLGGDAFGYYWLDEDHFVMYLLDVCGHG---IGAALLSISIMNVLQYQ 236 Query: 230 QLAHQNQRLPELGALLKQVNHLLRQANLPGQ-FPLLVGYYHRELKNLILVSAGLNATL-- 286 LA+ + +L+ +N + F + G Y + + L+ S G + Sbjct: 237 SLANID--FCNPATVLQSLNETFQMEKHNNMFFTIWYGIYSKSKRELLYASGGHPPGILI 294 Query: 287 -----NTGEHQVQISNGVPLGTLGNAYLNQLSQR 315 + + + G+ +G + + Y Sbjct: 295 VRSGDHMEDPIEIKTPGIVIGGIPDVYYQNAVCP 328 >UniRef50_D0MFG2 Response regulator receiver modulated serine phosphatase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFG2_RHOM4 Length = 371 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 68/305 (22%), Positives = 117/305 (38%), Gaps = 27/305 (8%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+VEDE R LL+ S AA+G +AL+L+ PDL+I DI MP+M+G L Sbjct: 6 ILVVEDEHTLRRLLEYRLSKY-YRVRSAANGEEALQLVLEEIPDLIISDIMMPKMDGFAL 64 Query: 70 LEHI--RNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 + + R P + ++A + + +R+GV+D + KP D+++L + L + Sbjct: 65 QQALQNRKETRAIPFIFLTAKADEHSRMRGMRMGVDDYITKPF-DIDQLLARIERLLERT 123 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLV 187 + DA + + ++L P + R+ + G Sbjct: 124 KYFQ---------SQLDARIGQDFS-----KKLMPKQLPSVRGYRLYFHNSPKEYGGGDF 169 Query: 188 LDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQ 247 D DV G A F ++ L Q LL++ Sbjct: 170 FDWTQHPSGSFFITIGDVMGKGLQAKFYA----FSFLSYIRGTLYAMLQTSQSPAELLRR 225 Query: 248 VNHLL-RQANLPGQFPLLVGY-YHRELKNLILVSAGLNATL---NTGEHQVQISNGVPLG 302 VNH+L + + F L+ + + +AG + + +V + + LG Sbjct: 226 VNHVLMQDTVMEETFASLLILRWDPTTHEVTYANAGHCRPILVKDDRTAEVVEYSDLILG 285 Query: 303 TLGNA 307 NA Sbjct: 286 LDPNA 290 >UniRef50_B4RXD7 Putative response regulator n=3 Tax=Alteromonas macleodii RepID=B4RXD7_ALTMD Length = 568 Score = 186 bits (474), Expect = 7e-46, Method: Composition-based stats. Identities = 71/315 (22%), Positives = 128/315 (40%), Gaps = 20/315 (6%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGA-TTVLAADGVDALELLGGFTPDLMICDIAMPR 63 + +ILIV+DE + R+LL + S G + A +G +A++ PDL++ D+ MP Sbjct: 8 VTAVKILIVDDEAINRTLLTNMLYSAGYKHCIEAVNGEEAIQHFIEEQPDLILLDVVMPG 67 Query: 64 MNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVF 121 ++G + IR +G P+L I+A E+ + + L +G D KP D + L + Sbjct: 68 LSGFDVAVQIRQLAKGPYLPILFITALEDNESLVRCLEVGGNDFATKPF-DRHILTAKIR 126 Query: 122 ACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAK-LLQELQPPVQQVISHCRVNYRQLVA 180 A L + VE++ + R ++ V A + + +V+SH + A Sbjct: 127 AHLKIRALSEHVEQQNQRLRLFNQRVAREHAIVEHIFSHAIVNRPEVLSHF--DCFLKPA 184 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 G + A + F D T G + AL + F L + + Sbjct: 185 ETFNGDLFLCEASPSGGVYFVVGDFTGHGLASAIGALPVTQAFQELSHQGV--------S 236 Query: 241 LGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL----NTGEHQVQI 295 + ++ ++N +L F +VG + E + L G+ A + + Sbjct: 237 IAEIICELNRILITFLPSDMFMAAVVGEINAEGNRVNLWQGGMPAVIIPAKTDMSLRTIT 296 Query: 296 SNGVPLGTLGNAYLN 310 S + LG + LN Sbjct: 297 SRHMALGIVDEHELN 311 >UniRef50_D2L926 Response regulator receiver modulated serine phosphatase n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L926_9DELT Length = 383 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 72/323 (22%), Positives = 116/323 (35%), Gaps = 39/323 (12%) Query: 1 MTQPLVGK--------QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP 52 M P G+ +ILI++DE + L G + AA G E+ P Sbjct: 1 MEHPKSGREADKARPPRILIIDDETINVETLAWMLKEAGFVPLRAASGQKGREIAAREQP 60 Query: 53 DLMICDIAMPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPV 110 DL+I DI MP +G + P++ IS +++ + K LR+G D + KP Sbjct: 61 DLVILDIMMPGESGFDTCTRLTADPATTDIPIIFISGLDDVENKVKGLRIGAVDYVTKPF 120 Query: 111 KDLNRLREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISH 170 L +RV+ RL R A++ AA +++ Q + Sbjct: 121 AREEVL--------------ARVKIHIRLRRGLKALLAEQAAKLAQIRDAQQSILVAPGD 166 Query: 171 C---RVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL 227 R R + A + G D+ SE + ++ D++ L+AL Sbjct: 167 LPEGRFAVRYVPALEAGGDFYDVFPWSEAVMGYFVADISGHDLGASFVTSSLKAL----- 221 Query: 228 QEQLAHQNQRLPELGALLKQVNHLLRQANLPG-QFPLLVGYYHRELKNLILVSAGLNATL 286 L L LK +N +L G + +R L +VS G A + Sbjct: 222 ---LRQNTGPLFTPVETLKNINSVLSTLLRDGKHLTASLLCLNRARTRLTVVSGGHPAPI 278 Query: 287 ---NTGEHQVQISNGVPLGTLGN 306 GE + ++G LG Sbjct: 279 LVGADGEVTLLAADGDVLGVFEA 301 >UniRef50_P74139 Regulatory components of sensory transduction system n=1 Tax=Synechocystis sp. PCC 6803 RepID=P74139_SYNY3 Length = 603 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 67/339 (19%), Positives = 119/339 (35%), Gaps = 41/339 (12%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 ++ L+ +IL+V+D L + G DAL LL DL++ D+ M Sbjct: 184 SRELLKGKILVVDDNPSNLDLFFQHLTRKGHAVTTCLSAKDALGLLQSQNYDLILLDLLM 243 Query: 62 PRMNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 P NG + LE+++ PV+++SA + I + + +G ED L KP + + Sbjct: 244 PETNGDQFLEYLKTSVEFQHIPVIIVSALDEFESIIRCIEMGAEDFLPKPFDPV-----L 298 Query: 120 VFACLYPSMFNSRVEEEERLFRDW-----DAMVDNPAAAAKLLQELQPPVQQVISHCRVN 174 + A + S+ R+ ++E+L+ + M ++ + P S + Sbjct: 299 LKARIGSSLEKKRLRDQEKLYTQQVEGLSEMMAKELEKGRQMQKNFLPAHLLTRSGWEFS 358 Query: 175 YRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL----QEQ 230 A G D+ L + L DV G L L R+L + Sbjct: 359 AYFSPAQQLAGDFYDLFELPGDRLGIVVADVCDKGVGAALFMGLFRSLIRIFSGQAALDG 418 Query: 231 LAHQNQRLP-------------------ELGALLKQVNH--LLRQANLPGQFPLLVGYYH 269 L + + LP E +K +N+ + + G Sbjct: 419 LINPSFNLPSGQGLLDVNLDNLLNNINFEPLESIKLINNYVAINHGEASMFATIFFGILE 478 Query: 270 RELKNLILVSAGLNAT-LNTGEHQV---QISNGVPLGTL 304 L ++ G + HQ+ S G +G L Sbjct: 479 PSSGKLSYINGGHEPVFIVDSNHQLKTKLTSTGPAVGML 517 >UniRef50_B4D1A0 Response regulator receiver modulated serine phosphatase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1A0_9BACT Length = 396 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 71/328 (21%), Positives = 109/328 (33%), Gaps = 17/328 (5%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+ +DE V R LL G AADG + L L PDL++ D MP+++G + Sbjct: 19 RVLLADDEAVSRRLLSESLQRSGFEVRQAADGEETLRLATDELPDLLVLDFEMPQLDGAQ 78 Query: 69 LLEHIRNRGDQ----TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 + +R + PV++++A + L+ G D + KPV + L + L Sbjct: 79 VCHLLRASDREDLRNLPVIMLTAHAGEVEEIGCLQAGANDFVTKPVSR-DVLAARIHTQL 137 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKL-LQELQPPVQQVISHCRVNYRQLVAADK 183 + + W + AAA Q L P V + Sbjct: 138 RLRSMADELRQRNDELARWRTEHEADLAAAHATQQALIPARLPTAEGWSVESIYQPVIEV 197 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGA 243 G VL F+ +D T G L L LF + E GA Sbjct: 198 GGDVLGWRPAGHGCWHFWIVDATGHGAAAALLTALAVQLFR--------QACETEREPGA 249 Query: 244 LLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGVP 300 +L VNH R+ F ++I AG G +G Sbjct: 250 ILSTVNHEFRKVFGGRAFMTGCCALIDPQGDVIFSGAGHPPLFVRRVNGNIDAFGPHGTL 309 Query: 301 LGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 LG Q +A + + G Sbjct: 310 LGLKDGDVYEQEHVTLEAGDVAVLYSDG 337 >UniRef50_B7GKR0 Response regulator with PP2C-type protein phosphatase output domain (REC-PP2C domains) n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GKR0_ANOFW Length = 378 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 54/313 (17%), Positives = 118/313 (37%), Gaps = 24/313 (7%) Query: 10 ILIVEDEQVFRSLLDSWFSS-LGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++I++D ++++ G + L D A + D+++ DI MP +G++ Sbjct: 3 VVIIDDYMPILEMMEAMLEHIEGISIHLFEDADKAYAYILSQQVDVILMDICMPETDGIE 62 Query: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 ++ PVL+++ ++ + +A G D + KP + L V Sbjct: 63 WCRRLKQHEQLQHIPVLMVTGYDDEQKLEEAFAAGAFDYIRKPFT-MVELVARVQLAYRQ 121 Query: 127 SMFNSRVEEEERLFRD-------WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLV 179 +++ + + ++ A+L+QE P H + + Sbjct: 122 KETMDQLKRTNEAYMESYRHMWMMQKKMNEDLQLARLVQEGLLPEPLNNEHIHLIGTYIP 181 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 + G + + + AF +DV G L A+ +R+L +GL+ ++ Sbjct: 182 STQLSGDLYFWQQVRPHMYAFIVIDVMGHGVASALVAMSIRSLLHGLM--------TKVT 233 Query: 240 ELGALLKQVNHL---LRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL--NTGEHQVQ 294 + +++++N L F G + K + V+AG L + + Sbjct: 234 DPLLVVQELNRHAFQLFGKETKYYFTAFYGTIDVKKKVIEYVNAGHPPALLMTNRKIMLL 293 Query: 295 ISNGVPLGTLGNA 307 G+P+G + NA Sbjct: 294 KEGGIPIGIVANA 306 >UniRef50_A3DCZ0 Response regulator receiver protein n=3 Tax=Clostridium thermocellum RepID=A3DCZ0_CLOTH Length = 394 Score = 185 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 55/304 (18%), Positives = 117/304 (38%), Gaps = 8/304 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF--TPDLMICDIAMPRMNG 66 +IL+++DE + G + A+ + L + + D++I D+ MP+++G Sbjct: 3 KILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSG 62 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + +L I+ V++++ ++ + A++ G + L KPV + + A Sbjct: 63 MDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 122 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 + + L + + +AAK+L + P I G Sbjct: 123 KLLMENERMTQELLAHRNYLQGLHDSAAKILLNMLPKNLPDIEGFNFAVDYKSCDGVGGD 182 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 + D+ + + + FY DV+ G + ++++++ + E Q ++ Sbjct: 183 MYDVCDIGD-YICFYVFDVSHHGILAAVISIIIKSFLQNI--EYNYRQGINKRRFPEIVL 239 Query: 247 QVNHLLRQANLPGQFP-LLVGYYHRELKNLILVSAGLNATLNTGEHQV--QISNGVPLGT 303 +N L F L +G+ + K L VSAG E+ + S G LG Sbjct: 240 DLNLELLSNTAQNVFASLFLGFIDKNSKKLYTVSAGHIPQYIMKENGLVPLESTGPILGV 299 Query: 304 LGNA 307 ++ Sbjct: 300 FEDS 303 >UniRef50_A1WZ09 Response regulator receiver protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZ09_HALHL Length = 577 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 64/303 (21%), Positives = 121/303 (39%), Gaps = 18/303 (5%) Query: 11 LIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLL 70 L+V+DE V LL++ + G + A +G +A+ D+++ DI MPRM+G + Sbjct: 13 LVVDDEPVNTMLLEAILGARGFHVITATNGEEAVARFREQPVDMILMDIMMPRMDGYQAT 72 Query: 71 EHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY-PS 127 I+ + PVL ++A + +A+ + G +D + KP+ + +L + + L Sbjct: 73 RQIKAMDTEGFIPVLFVTALTDEQRLAQCVEAGGDDFVTKPISRV-QLNAKIDSWLRTRG 131 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLV 187 ++++ V + + L + + A +++ R +Y+ AA G + Sbjct: 132 LYHTVVAQRDVLRSHQERLEREQETAERIVARATESSDLRAPGVRFHYQ--PAAILSGDI 189 Query: 188 LDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQ 247 L A +L D T G + L A+F + R LL Sbjct: 190 LLAARRPNGNLLILIGDFTGHGIGAAVGVPGLAAVFY--------DRVGRGAHPAELLDD 241 Query: 248 VNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGVPLGT 303 VN L ++ F + L + +AG+ + G Q S +PLG Sbjct: 242 VNEKLFRSLPADMFLTGALLEVDFHGHRLGVWNAGMPPVWLIRDGGVVQRFHSVDLPLGI 301 Query: 304 LGN 306 + + Sbjct: 302 IRD 304 >UniRef50_C6J6U9 Phosphoserine phosphatase n=2 Tax=Bacillales RepID=C6J6U9_9BACL Length = 384 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 117/320 (36%), Gaps = 38/320 (11%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGA----TTVLAAD-----GVDALELLGGFTP---DLM 55 +ILIV+D ++ T A D GV L+ + P DL+ Sbjct: 1 MRILIVDDNPTNTMIIREILKKENYRNTVTVTSARDMFERLGVKNLDAVEESGPSDVDLI 60 Query: 56 ICDIAMPRMNGLKLLEHI-RNRG-DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDL 113 + D+ MP M+G++ + R+ + P++V++A + +A+AL G D + KP+ + Sbjct: 61 LLDMMMPEMDGIQACRILQRSEHLKEIPIIVVTAVGDSHKLAEALDAGAVDYVTKPINKV 120 Query: 114 NRLREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRV 173 L + L R++ E+ R+ D + A L+Q S + Sbjct: 121 -ELMARIRLAL-------RLKLEKDWHRNRDQRIQEELKLASLVQNAVLSPPIHDSEVEI 172 Query: 174 NYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAH 233 + + + G + +L E A LD+ G + +LF + L Sbjct: 173 DALYKPSYELAGDLYSWYSLGEGKYAVILLDMMGHGISS--------SLFCMFISSVLKD 224 Query: 234 QNQRLPELGALLKQVNHLLRQANLPG-----QFPLLVGYYHRELKNLILVSAGLNATL-- 286 E +++++N Q ++ F + K + V+AG L Sbjct: 225 TVFTYVEPKLVIEELNRRFIQLHIESKLIQYYFTAIYLVVDTRRKVIEYVNAGHPPALLY 284 Query: 287 -NTGEHQVQISNGVPLGTLG 305 N + G P+G Sbjct: 285 TNNKQPVRLDQVGPPVGLFH 304 >UniRef50_B9XP30 Response regulator receiver modulated serine phosphatase n=1 Tax=bacterium Ellin514 RepID=B9XP30_9BACT Length = 385 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 61/281 (21%), Positives = 112/281 (39%), Gaps = 27/281 (9%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+D +V +L S LA G AL++ PDL++ DI MP M+G + Sbjct: 8 RILLVDDAKVNLDILVEGLKSD-HKLSLALTGETALQIASRTPPDLVLLDIVMPGMDGYE 66 Query: 69 LLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + +R + P++ +S+ E + + G D L KP D+ ++ V + L Sbjct: 67 VCRRMRQIPETAEVPIMFLSSLEEIQNKTLGFEAGANDYLTKPF-DMLEVKARVRSLLKA 125 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQP----PVQQVISHCRVNYRQLVAAD 182 ++ V+E+ + A ++ + P PV++ + A + Sbjct: 126 KAYSDEVKEQ---------IATELRFAREIQMGMLPHDFIPVERDY-GVQFGAVLEPARE 175 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 G + I A L + DV+ G + + +L L ++ + E Sbjct: 176 VGGDLYGICAAGAERLVIFFGDVSGKGIPASMFMVRAISLARLLARD--------MAEPE 227 Query: 243 ALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGL 282 +L ++N L N G F L + + L L +AG Sbjct: 228 HILARLNDELATDNPSGMFVTFLCAVFEPKSGRLTLANAGH 268 >UniRef50_C4XQQ3 Response regulator receiver protein n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XQQ3_DESMR Length = 382 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 67/313 (21%), Positives = 109/313 (34%), Gaps = 27/313 (8%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILIV+DE + L G T + AA G + P+L+I DI MP +G + Sbjct: 16 RILIVDDETINVETLAWMLKEAGFTPLRAASGPAGRRMAADEQPELIILDIMMPGESGFE 75 Query: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL-REMVFACLY 125 + P++ IS +++ + + L+LG D + KP L R + L Sbjct: 76 TCAKLTADPATTDIPIIFISGLDDVENKVRGLKLGAVDYITKPFAREEVLARVKIHIRLR 135 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + E+ +L A Q + I R R + A + G Sbjct: 136 RGLRALLAEQAAKL-----------AQIRDAQQAIL-VCPDDIPEARFAVRYVPALEAGG 183 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 D+ SE + ++ D++ L+AL L L Sbjct: 184 DFYDVFPWSETVMVYFVADISGHDLGASFVTSSLKALVR--------QNANPLYTPVETL 235 Query: 246 KQVNHLLRQANLPG-QFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGVPL 301 K +N +L G + + +R L LVSAG A + G + G L Sbjct: 236 KNMNSVLTSFLRDGMHLTASLIFLNRTRSRLTLVSAGHPAAIKVGPDGTVETLACEGDVL 295 Query: 302 GTLGNAYLNQLSQ 314 G + Q+ Sbjct: 296 GVFESVQCGQIEC 308 >UniRef50_Q1N2W0 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=2 Tax=Gammaproteobacteria RepID=Q1N2W0_9GAMM Length = 569 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 61/311 (19%), Positives = 127/311 (40%), Gaps = 19/311 (6%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + +ILI +D + R +L + +G + A +G +A++ PD+++ D+ MP M Sbjct: 1 MEPLKILIADDNKTDRMILSAIVKKMGHDVLQAENGAEAVDQFQSHHPDIILLDVMMPVM 60 Query: 65 NGLKLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 +G + I+ + D P++ +++ ++ D+A L G +D L KP K + L+ + A Sbjct: 61 DGQQAAREIKMQAGEDMVPIIFLTSLQDAHDLAACLDSGGDDFLTKPYKQI-ILQAKINA 119 Query: 123 CLYPSMFNSRVEEEERLFRD-WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 N+ ++ + + R+ + ++ A + + + + + Y + Sbjct: 120 FSRMRRMNTMLQNQRDVIRENNEHLMHEQQVAKAVYDNVAHSGCLDLPNLK--YMISPFS 177 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPEL 241 G VL A L D T G + A+ L +F G+ + + Sbjct: 178 VFNGDVLLAARKPSGSLHILLGDFTGHGLPAAIGAMPLAEIFYGMTAKGFTMTD------ 231 Query: 242 GALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL----NTGEHQVQIS 296 +L+++N L+ G F + ++L + GL + + S Sbjct: 232 --ILREINIKLKTILPIGYFCCACMATVRFRSQHLEIWMGGLPDYYFLHSKDRKIETINS 289 Query: 297 NGVPLGTLGNA 307 N +PLG L + Sbjct: 290 NHLPLGVLSSQ 300 >UniRef50_A0Z812 Response regulator n=4 Tax=unclassified Gammaproteobacteria RepID=A0Z812_9GAMM Length = 399 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 67/345 (19%), Positives = 132/345 (38%), Gaps = 12/345 (3%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP-DLMICDI 59 MT + +++LIV+D+ L +A + D LG +P D ++C+ Sbjct: 1 MTIDIDHRRVLIVDDQSTRAHHLIDALGMDAFEFDVANEVPDLQGALGPDSPWDCVLCNA 60 Query: 60 AMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 + ++ + +RN Q PV+V++ +N+ + AL LG D +KP L+ Sbjct: 61 GLINVSWASVRRAMRNFDVQVPVIVVADEQNVDSMKTALGLGATDFFVKPHARPGLLKRS 120 Query: 120 VFACLYPSMFNSRV-------EEEERLFRDWDAMVDNPAAAAKLLQE-LQPPVQQVISHC 171 + C+ + E R +++ A + +Q L P Sbjct: 121 IERCVNHRYLQRELKASKEDVERSNTELRHSLRVLEQDQQAGRQVQRALLPSGALHQGDY 180 Query: 172 RVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL 231 ++ + + G D ++ E+ +AF+ DV+ G + A +LL+ LF + L Sbjct: 181 WFSHTIVPSLYLSGDFTDYFSVGEDQIAFFLADVSGHGSSSAFATVLLKNLFARKRSDFL 240 Query: 232 AHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAG---LNATLNT 288 + + +L+ N+ L + + ++VG + + L AG L+ Sbjct: 241 RRGDHSVVSPKDMLELANNELLELAINKYATMIVGVLNFKSHQLTYSIAGHLPHPVLLDE 300 Query: 289 GEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 + G P+G + +A Q + G L L+ Sbjct: 301 NSVRYLEGEGPPVGLMRDARYTQHEVVLPEHFVLALLSDGILELL 345 >UniRef50_B3PEZ3 Response regulator n=3 Tax=Gammaproteobacteria RepID=B3PEZ3_CELJU Length = 592 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 55/306 (17%), Positives = 120/306 (39%), Gaps = 19/306 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+ +D R +L+S G +LA +G++A+ PD+++ D MP M+G Sbjct: 31 KILVADDTDTDRLILESILRKEGHQVLLARNGLEAISAYEAEHPDIVLLDALMPEMDGFG 90 Query: 69 LLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA-CLY 125 I+ P++ +++ + + + L G +D L KP + L+ + A Sbjct: 91 AARTIKQLAGDELVPIIFLTSLSDTESLVRCLDAGGDDFLSKPYNRV-ILQAKIKAFNRM 149 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + ++ + + +++ + + ++ A + + + R L + G Sbjct: 150 RELHSTMLTQRDQIVQYNNRLLQEQQVAKHVFDNVAHSGCLNAKNVRFFLSSLAVFN--G 207 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 VL A ++ D T G + A+ L + F G++ + + +L Sbjct: 208 DVLVAAMRPNGNMMVLLGDFTGHGLPAAIGAMPLASTFYGMVPKGFG--------MSDIL 259 Query: 246 KQVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNATLNTGEHQV----QISNGVP 300 +++N L+ G F + + + + + + GL + S +P Sbjct: 260 REINGKLKNILPVGIFCCAIMLDINFRKRRVKIWNGGLPDAFIYRQKTATVVPVRSTHLP 319 Query: 301 LGTLGN 306 LG L N Sbjct: 320 LGVLSN 325 >UniRef50_Q21IP0 Stage II sporulation E n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IP0_SACD2 Length = 575 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 60/307 (19%), Positives = 133/307 (43%), Gaps = 19/307 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++LI ED R +L + S+ G + DGV+A+ PD+++ D+ MP M G++ Sbjct: 9 KVLIAEDSAPDRLILATIVSNAGHIAIPVTDGVEAVTAFKAERPDIILMDVLMPNMGGVE 68 Query: 69 LLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA-CLY 125 + IR R + P+L +++ + + + L G +D + KP + L+ + A Sbjct: 69 AAKKIREIARDELVPILFLTSLSDTDSLVECLEAGGDDFVSKPYNRV-VLQSKIKAFGRM 127 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 M + ++ + + R + ++ A ++ ++ +S+ R + L + Sbjct: 128 REMHTTVAKQRDEIERHHNHLIQEQRVAKQVFDKIAHSGCLDLSNIRYSMSPLAVFNGDV 187 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 LV +++ ++ D T G + ++ L F G++++ A + +L Sbjct: 188 LVAEVSP--SGNMIILLGDFTGHGLPAAVGSIPLATTFYGMVRKGFALPD--------IL 237 Query: 246 KQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNAT----LNTGEHQVQISNGVP 300 +++NH L + G F + + + + GL + T + + S+ +P Sbjct: 238 REINHKLHEILPVGFFCCATCIELNFAEQTMFTWTGGLPPSYLYRYKTDSYDIINSSNLP 297 Query: 301 LGTLGNA 307 LG L ++ Sbjct: 298 LGVLASS 304 >UniRef50_A4XW58 Response regulator receiver protein n=3 Tax=Gammaproteobacteria RepID=A4XW58_PSEMY Length = 562 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 66/306 (21%), Positives = 121/306 (39%), Gaps = 19/306 (6%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILIVED R LL + S G + A +G++A+ L P L++ D MP M+G + Sbjct: 7 ILIVEDNAADRMLLSTIVSRQGHRVLTAGNGLEAVALFEQERPHLVLMDALMPVMDGFEA 66 Query: 70 LEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC-LYP 126 I+ + + P++ +++ + + L G +D L KP + L + A Sbjct: 67 ARRIKQQAGEALVPIIFLTSLTENEALVRCLEAGGDDFLAKPYNRV-ILEAKIGAMDRLR 125 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 + + +E+ + + R + ++ A + ++ + R Y Q A G Sbjct: 126 RLQATVLEQRDLIARHNEHLLREQRVAKAVFDKVAHSGCLDAPNIR--YLQSPYALFNGD 183 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 +L A + D T G + A+ L +F G+ + A L +L+ Sbjct: 184 LLLAAYTPSGGMHVMLGDFTGHGLPAAIGAMPLAEVFYGMTSKGHA--------LAEILR 235 Query: 247 QVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNATL----NTGEHQVQISNGVPL 301 ++N L++ G F + L + + GL + Q +S +PL Sbjct: 236 EINAKLKRILPVGVFCCATLLNISSQRGLLEVWNGGLPDGYLLHGDGRPRQALVSRHLPL 295 Query: 302 GTLGNA 307 G L A Sbjct: 296 GILEPA 301 >UniRef50_Q1N5B1 Putative response regulator n=1 Tax=Bermanella marisrubri RepID=Q1N5B1_9GAMM Length = 560 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 64/332 (19%), Positives = 121/332 (36%), Gaps = 23/332 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 IL+V+D+ R +L G A +G +A+ DL++ D+ MP M+GL Sbjct: 1 MHILVVDDQVTNREILKWLLEDEGHQVSEAQNGEEAVNEFKSGDFDLVLMDVIMPIMDGL 60 Query: 68 KLLEHIRNRGDQ---TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 + + I+ G + PV+ ++A ++ + L G +D L KP ++ L+ + A L Sbjct: 61 EATKRIKEIGQEDNYVPVIFLTALDDAKALKDCLDSGGDDFLSKPYNEV-ILKAKIHAHL 119 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCR-VNYRQLVAADK 183 + E+ + ++++ + ++ I + R + A+ Sbjct: 120 RIRELTRDISEKNAVLTHYNSLWQREQNIVSHIFN--KALEHNIKNTRSLRTHIQPASTF 177 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGA 243 G ++ A L + D T G + L L FN L L +G Sbjct: 178 NGDIVLSAPSLTGGLYVFVGDFTGHGLGASIGTLPLVHAFNELAIRHL--------SVGE 229 Query: 244 LLKQVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNATLNTGEHQVQISN----G 298 + + N +LR F + ++ L + GL E + + Sbjct: 230 IAYEFNRMLRSMLPDYMFCCATIVELNESGDSVQLWTGGLPDGYLISESEGVVDTLCSEN 289 Query: 299 VPLGTLGNAYLN---QLSQRCDAWQCQIWGTG 327 +PLG + N Q+ + I G Sbjct: 290 MPLGIESDERFNKGFQVKHLKSDQKLIIITDG 321 >UniRef50_Q2W139 Chemotaxis response regulator protein-glutamate methylesterase n=2 Tax=Magnetospirillum RepID=Q2W139_MAGSA Length = 625 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 63/301 (20%), Positives = 109/301 (36%), Gaps = 26/301 (8%) Query: 18 VFRSLLDSWFSSLGA-TTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNR 76 + R L+++ +G G L + PDL++ D+ MP M+G ++ +R Sbjct: 260 MNRVLMETLLRRMGVGQVETVESGEKGLAAIEREKPDLVLLDVMMPGMDGFEMCRRLRRL 319 Query: 77 GD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMFNSRVE 134 + PV+ ++A + AD +G D++ KP+ D N + V L R+ Sbjct: 320 HPLTELPVIFVTALDGPADRNACFAVGGSDMVAKPI-DANEVAARVGVHLRLGQAMDRLT 378 Query: 135 EEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVIS-----HCRVNYRQLVAADKPGLVLD 189 D + + AA L P ++ S V+ R +++ G Sbjct: 379 A------YQDRVHEELRAARGAQAALMPTSAELSSIRIRQGLVVDGRIESSSELGGDFWT 432 Query: 190 IAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVN 249 + N + D T G L L + L + R+P ALL+ +N Sbjct: 433 VLPAGPNQMFLLVADFTGHGPVAAFNVFRLHLLLSRLPR--------RMPTPSALLEYLN 484 Query: 250 HLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNA--TLNTGEHQVQISNGVPLGTLGN 306 L+ GQF E + A + GE + ++G PLG + Sbjct: 485 LELKAVLRSGQFAAAFAALIDVEEGVMTYAGAASPPAVLVVDGEVRFLDADGPPLGAFVD 544 Query: 307 A 307 A Sbjct: 545 A 545 >UniRef50_A0K1U5 Response regulator receiver protein n=3 Tax=Arthrobacter RepID=A0K1U5_ARTS2 Length = 378 Score = 180 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 61/335 (18%), Positives = 115/335 (34%), Gaps = 22/335 (6%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 MT ++ L++ED+ R LL + G + G +EL+ +L+ D+ Sbjct: 13 MTDEPEVRRALVIEDDDDIRGLLVHILTKQGFQVSAESTGRAGVELMQREGAELVTLDLN 72 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 +P ++G+++ +R + +L+I+A D L G +D L KP L + Sbjct: 73 LPDIDGVQVCRELR-KFSDAYILMITARGEELDRLTGLDTGADDYLTKPFSP-RELASRI 130 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 A ++ E R D A ++ + L P + + + Sbjct: 131 TALFRRPRASAVHEAAAR---------DELRRAVEVQRSLLPAEGLSLDGFDIAGSFRPS 181 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 + G D S+ L D G L A +RA+ + ++ Sbjct: 182 RNVGGDFFDWYP-SDGGLQMTLADAMGKGMGAALIAATVRAVMRSV--AHRTPLSEAFSS 238 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQISN 297 G +L+ L Q+ L L + AG L+ G +++ Sbjct: 239 AGRILEA---DLEQS--ASFVTLFHARLDAATGILQYLDAGHGLALHIRADGSCSRLLTS 293 Query: 298 GVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 G P+G + + + C + G L + Sbjct: 294 GPPVGAWPDQEWDAHQVSLEPGDCLAVVSDGLLDV 328 >UniRef50_C7LV69 Response regulator receiver protein n=2 Tax=Desulfovibrionales RepID=C7LV69_DESBD Length = 377 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 61/328 (18%), Positives = 112/328 (34%), Gaps = 25/328 (7%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILIV+DE + LLD G T+ G +A L +PDL++ D+ MP +G Sbjct: 12 ILIVDDEPLNIRLLDIVLKKNGYRTLSCTSGPEARALAAEHSPDLILLDVLMPDEDGYAT 71 Query: 70 LEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 ++ + P++ ISA + + + L +G D + KP + L + Sbjct: 72 CALLKQQSQTSDIPIIFISALTDTSSKVRGLEVGGVDFISKPFEKAEVLARVKVHLKLRF 131 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLV 187 + + +E + + A V + A +L P R + G Sbjct: 132 TYRALIEAQAQRL----AQVQDAQQALLVLPAELPEAG-------FAVRYEPVLEAGGDF 180 Query: 188 LDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQ 247 D+ + + DV+ L + L+ L+ + L Sbjct: 181 YDVLHVGGTTFDYVVADVSGHD--------LGTSYITSALKALLSQNCNLVTSPAESLTM 232 Query: 248 VNHLLRQANLPG-QFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGVPLGT 303 +N +L + G +RE + L ++AG + + G ++ +G LG Sbjct: 233 INSVLCRILTGGTHITAGFARLNREQRTLRYINAGHPSPVLVRAGGGIEIPQPSGDILGV 292 Query: 304 LGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + L T G + Sbjct: 293 FDAVWFEALELSVQPGDRLFMYTDGLIE 320 >UniRef50_B7RZ17 Stage II sporulation protein E n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RZ17_9GAMM Length = 393 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 62/315 (19%), Positives = 121/315 (38%), Gaps = 14/315 (4%) Query: 11 LIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDL--MICDIAMPRMNGLK 68 L+V+ + L S SSLG T D A E L PDL ++C++ M + Sbjct: 8 LVVDHDTARLEALASLVSSLGFTPENYTDANAAREYL-STRPDLDVILCEMDMEGLTWDS 66 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV-------F 121 ++ Q PV++ S + + +ALR G D ++PV D+ L+ + Sbjct: 67 AHRSLQEMDVQIPVILFSDEAQASRMMRALRFGASDFFVRPVDDVEALQRSLDRCVRQRQ 126 Query: 122 ACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQ-ELQPPVQQVISHCRVNYRQLVA 180 R++ R +++ A + +Q + P V++ ++ + + Sbjct: 127 VRRELEQSRQRLQAANTELRGTIHVLEQDQQAGRQVQMRMLPATPLVLNDYVFSHTVIPS 186 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 G D + ++ + F+ DV+ G + +LL+ LF + L + + Sbjct: 187 LYLSGDFTDYFTVGDHFVTFFMADVSGHGSSSAFTTVLLKNLFARKRSDFLRQNDDTILS 246 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGL---NATLNTGEHQVQISN 297 ALLK+ N + + ++VG + NL AG ++ + Sbjct: 247 PLALLKRANKEVMDLEVGKFATMVVGVLDMKSNNLRYSVAGHLPQPVLVSGDGARYLRGE 306 Query: 298 GVPLGTLGNAYLNQL 312 G +G + +A + Sbjct: 307 GSAVGIMDDASYEEH 321 >UniRef50_C5S8G9 Response regulator receiver protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S8G9_CHRVI Length = 408 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 71/306 (23%), Positives = 122/306 (39%), Gaps = 21/306 (6%) Query: 11 LIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLL 70 LIV+DE R LL S G T+ AA+G +ALE PD++ D MP M+GL+ Sbjct: 26 LIVDDEVANRRLLGSMLVKEGFRTLEAANGREALECFEQERPDIVFMDALMPEMDGLEST 85 Query: 71 EHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 I+ D PV+ ++A ++ + ++ G +D L KP L RLR V A Sbjct: 86 RRIKRLTGEDFVPVIFLTAVKDEQCLLSCIKAGGDDFLAKPFT-LTRLRARVLAMERVRD 144 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHC--RVNYRQLVAADKPGL 186 + ++RL + ++++ KL + + + + C + + A G Sbjct: 145 LQRTLAAKQRLL---ETLLEHDHEEKKLAERVWTQAVKYHNVCVPAIGMVERPATIFNGD 201 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 ++ + L + L D T G + AL + F+ + + ALL Sbjct: 202 LVLMHYLPDGGLRILLGDFTGHGLAATVGALPVADTFHAMTTKGFDDV--------ALLS 253 Query: 247 QVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNAT---LNTGEHQVQISNGVPLG 302 ++N L + +F L + G+ A G + S+ +PLG Sbjct: 254 EINQKLYRLLPTERFMAAYLISISEGGDTLSWWNGGMPAAHLCTAAGRIE-LPSHALPLG 312 Query: 303 TLGNAY 308 L + Sbjct: 313 ILPELH 318 >UniRef50_Q7NUQ3 Probable two-component response regulator n=1 Tax=Chromobacterium violaceum RepID=Q7NUQ3_CHRVO Length = 566 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 67/331 (20%), Positives = 125/331 (37%), Gaps = 27/331 (8%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +L+ ED + R L+ +G A +G A+E PD+++ D+ MP M+G + Sbjct: 6 TVLVAEDVEPTRLLMGLVIEEMGHQVWYAENGQQAVEQCRRELPDMVLMDMMMPVMDGHE 65 Query: 69 LLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 IR P++ +SA + +L +G +D L KP+ +L L + Sbjct: 66 ATRQIRQLCGDRWLPIIFLSARSDEEAHISSLDVGADDYLPKPI-NLTMLAAKIRVMQRI 124 Query: 127 SMFNSRV-EEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK-P 184 S R+ ++ ++L + + A +L + +Q + Y +A++ Sbjct: 125 SEMQRRISDDSQQLVSYYHSNEREQLFAKHVLDSIVGSEEQDLPGV---YSWQQSAEQFS 181 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 G VL A L D T G + L+ L +F + + L ++ Sbjct: 182 GDVLARALSPTGQLCVMLADSTGHGLSAALSCLPAVDIFYAMARRGFP--------LTSM 233 Query: 245 LKQVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNATLNTGEHQVQISNGVPLGT 303 +++N L + G+F EL + + + G+ + G P+ Sbjct: 234 AREINAKLNRLLPVGRFVAAALITIDWELGCVEVWNGGIPCVM------FVDDEGCPMKE 287 Query: 304 LGNAY--LNQLSQRCDAW--QCQIWGTGGRL 330 + Y L LS W + W G+L Sbjct: 288 WKSQYPPLGILSPDEFCWGTETYFWEQSGQL 318 >UniRef50_Q7NSC1 Probable two-component response regulator n=1 Tax=Chromobacterium violaceum RepID=Q7NSC1_CHRVO Length = 402 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 67/310 (21%), Positives = 122/310 (39%), Gaps = 21/310 (6%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 P+ IL+VED R ++ + LG A +GV+A+E PDL++ DI MP Sbjct: 14 PMSSTTILLVEDSATNRYFIEQFIQELGYRCASATNGVEAVEYCRNQVPDLVLMDIIMPE 73 Query: 64 MNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVF 121 M+GL+ +R P++ +++ + + L+ G +D L KPV + L + Sbjct: 74 MDGLQATTELRRLFGEHWVPIIFLTSLNELESVVSGLKAGGDDYLAKPVS-FDLLSAKIH 132 Query: 122 ACLYPSMFNSRV-EEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQL-V 179 L + +++ ++ RL + + A +L++ L H ++ L Sbjct: 133 VFLRIAQMQNQINQDAIRLEKYYQENEFEQQLALELIERLVRLRTSRPGHV---WQYLNP 189 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 AA G ++ I D T G ++AL F+ + + Sbjct: 190 AAGFNGDLIIICQPPGGGEHIMLADCTGHGLTAAISALPAIDCFHEMTEAGC-------- 241 Query: 240 ELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKN-LILVSAGLNATL---NTGEHQVQ- 294 ++ A+ + VN L + G+F + + G+ L GE + + Sbjct: 242 DMAAIARGVNQKLHKLLPGGRFVAAALIAIDADGRHARVWNGGVPCVLLFNEKGEVEARC 301 Query: 295 ISNGVPLGTL 304 S PLG L Sbjct: 302 KSAHPPLGVL 311 >UniRef50_Q28WC4 Response regulator receiver (CheY-like) modulated serine phosphatase n=1 Tax=Jannaschia sp. CCS1 RepID=Q28WC4_JANSC Length = 426 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 128/322 (39%), Gaps = 29/322 (9%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +L+++D R+++ + G T + D V+AL L++CD MP M G + Sbjct: 24 TVLVLDDSPAQRNMVCALLRRWGHTAISTGDPVEALARAREPDISLILCDWMMPEMTGPE 83 Query: 69 LLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +R+ T VL++++ + +A+ L G +D L KPV+ L+ + A Sbjct: 84 FCHRLRSEVTDTYPYVLLLTSNTDRGAVAEGLAAGADDFLNKPVRPP-ELQARMNAGARI 142 Query: 127 SMFNSRVEEEE--------RLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQL 178 + + L +DA+ + A +L + V+ Sbjct: 143 VAMQQELRAKNGLLETTLDELQLLYDAIDRDLDEARRLQMASLQDTHRPFKGGDVSLLLE 202 Query: 179 VAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRL 238 + G ++ ++++ + + LDV+ G +A+ +L A G+L E QN + Sbjct: 203 ASGHVGGDMVGYFNVTDDTIGLFSLDVSGHG----VASAMLAARTAGMLSEASPDQNIAM 258 Query: 239 PE----------LGALLKQVNH-LLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN 287 + ++N LL++ F + + + + + L +V AG + Sbjct: 259 ERGPDGQFFDLPPDIAVGRMNDLLLKEVQTDRYFTICIAFANLKTGLLRIVQAGHPHPMV 318 Query: 288 ---TGEHQVQISNGVPLGTLGN 306 TG+ + G P+G L N Sbjct: 319 LRATGQVDMVGDGGPPVGLLPN 340 >UniRef50_B7S1F6 Stage II sporulation protein E n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1F6_9GAMM Length = 595 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 74/348 (21%), Positives = 130/348 (37%), Gaps = 35/348 (10%) Query: 11 LIVEDEQVFRSLLDSWFSSLG-ATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 L+V+D+ + R ++ L A + DG++A ++L D+++ D+ MP M+GL+L Sbjct: 22 LVVDDDPMVRKIVTRGLGQLNPAKVLEVEDGLEAQKVLQTMAIDVVVTDVVMPNMDGLEL 81 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC------ 123 ++ + Q +++S E +AL+ G D L KP ++ R+R V Sbjct: 82 MKWAQEHCPQPLWIILSGLETFDAAVEALQSGAFDYLPKP-PEVPRVRVAVRNAMDHIEL 140 Query: 124 -LYPSMFNSRVEEEE--------------RLFRDWDAMVDNPAAAAKLLQE-LQPPVQQV 167 + +E+ + ++ A++ A+++Q L P V Sbjct: 141 ERERKRLYAELEDSNSQLAEKVDQLQQVCHVLQNQAAVIQADLNRAEIIQRALLPQEPPV 200 Query: 168 ISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL 227 I + + G D L E L D G +AA +L LF L Sbjct: 201 IPGWCMETLYRPGSSVGGDFYDAVMLDEKHLGLVIADAAGHG----VAAAMLSVLFKLRL 256 Query: 228 QEQLAHQNQRLPELGALLKQVNHLLRQA-NLPGQF-PLLVGYYHRELKNLILVSAGL-NA 284 ++ H+ +P +L+++N L + PG F + L SAG Sbjct: 257 KQLDRHEKVLMPN--QVLERLNSRLYDMLSAPGAFITAVYVLLDLHSGRGWLASAGHTPC 314 Query: 285 TLN--TGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRL 330 LN G + G LG A + + T G L Sbjct: 315 VLNPAKGSPLMLERTGPALGLEPGAGYEEHEFTLTDGDRMMLYTDGVL 362 >UniRef50_C0QLH6 Sensor protein n=2 Tax=Deltaproteobacteria RepID=C0QLH6_DESAH Length = 418 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 13/186 (6%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 G +IL ++DE R + S+ G + A DG + L+L PDL++CD+ MP M+ Sbjct: 5 TGIKILTIDDEPYIRESIKSFLEDFGFDVIAAEDGRNGLKLFESQRPDLVLCDLRMPEMD 64 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL++LE + +TP++V+S N+ D +ALRLG D ++KP++D+N L V L Sbjct: 65 GLEVLEAVTKTSPETPIIVVSGAGNILDTVEALRLGAWDYIIKPIQDMNVLFHAVGKGL- 123 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 E RL R+ + + A L+ +++ + + A G Sbjct: 124 ---------ERARLIREKNQYQQDLEKANARLKTSLDTLERTRDQLVQSEKM---AALGG 171 Query: 186 LVLDIA 191 LV +A Sbjct: 172 LVAGVA 177 >UniRef50_C1DQE9 Response regulator n=19 Tax=Pseudomonadaceae RepID=C1DQE9_AZOVD Length = 575 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 65/332 (19%), Positives = 131/332 (39%), Gaps = 25/332 (7%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILI ED R LL + G + A +G++A+ + P +++ D MP M+G + Sbjct: 7 ILIAEDSPADRMLLATIVGRQGYRVLTAGNGLEAIMMFARERPHMVLMDALMPVMDGFEA 66 Query: 70 LEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC-LYP 126 I+ + P++ +++ + + L +G +D + KP + L + A Sbjct: 67 ARRIKQMAGEELVPIIFLTSLTENEALVQCLEVGGDDFIAKPYNSV-ILDAKIKAMDRLR 125 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 + + +E+ + + R + +++ A + ++ + R Y Q A G Sbjct: 126 RLQATVLEQRDLIARHNEHLLNEQRVAKAVFDKVAHSGCLNAPNIR--YMQSPYALFNGD 183 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 ++ A + D T G + A+ L +F G+ + L +L+ Sbjct: 184 LMLAAFKPSGGMHVLLGDFTGHGLPAAIGAMPLAEVFYGMTAKGY--------SLAEILR 235 Query: 247 QVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNATL----NTGEHQVQISNGVPL 301 ++N L++ G F V + + + + + GL ++GE S +PL Sbjct: 236 EMNAKLKRILPVGVFCCAVMLNLSFQRRVVEVWNGGLPDGYLRRGSSGERIPLRSRHLPL 295 Query: 302 GTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 G L S D ++ TG R+ L+ Sbjct: 296 GILDA------SCFDDRYEIYPMETGDRIFLL 321 >UniRef50_Q60AL6 Response regulator n=1 Tax=Methylococcus capsulatus RepID=Q60AL6_METCA Length = 389 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 109/305 (35%), Gaps = 20/305 (6%) Query: 10 ILIVEDEQVFRSLLDSWFSSL-GATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +L+++D+++ + +D AL P L++ D+ MP ++GL Sbjct: 18 VLLIDDQRIIGEAVRRLLKDETDIEFHFLSDPTQALAEAERVRPTLILQDLVMPDVDGLD 77 Query: 69 LLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 L+ R P++V+S+ E A A+A G D L+K L + V Sbjct: 78 LVMRFREHPASRNVPLIVLSSKEEPAVKAEAFARGANDYLVK-------LPDRVELIARL 130 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 ++ + + + A+ + AA ++ P R + + +A G Sbjct: 131 RYHSNAYIAQLQRDEAYGALAADLHEAASYVRSQLPAPIAS-GPIRSAWEFVPSATLGGD 189 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 + AF+ LDV G V ALL + + + L + + ++L Sbjct: 190 SFGYFDVDPGHFAFFLLDVCGHG---VGPALLSVSAMAAISRRTLPEVD--FLDPTSVLG 244 Query: 247 QVNHLLRQANLP-GQFPLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQISNGVPLG 302 +N F L G + R + + SAG + +P+G Sbjct: 245 ALNEAFAMEKHNLLYFTLWYGVFERATRTVRYASAGHPPAIVVAAGSAPAELRQQAMPIG 304 Query: 303 TLGNA 307 + +A Sbjct: 305 VMSDA 309 >UniRef50_C8X119 Response regulator receiver modulated serine phosphatase n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X119_DESRD Length = 526 Score = 175 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 59/307 (19%), Positives = 109/307 (35%), Gaps = 11/307 (3%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-GFTPDLMICDIAMPRMNGLK 68 IL+V+ + + A G AL+L ++I + +P M+G+ Sbjct: 125 ILVVDANPESLASITLCLQRYLFAVQGATTGTQALQLFDARTDVKVVIVEADLPDMDGMA 184 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 L +R R ++ ++ +SA + + A+ L+ G D L KP + L + L Sbjct: 185 LCSRLRKRKARNELAIIGVSAAQEGSLSARFLKKGANDFLTKPFQR-EELYARLLQNLDT 243 Query: 127 SMFNSRVEEEERLFRDWDA-MVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 ++ E+ R + + M + AAA++ Q L P I + N+ G Sbjct: 244 LEVIAKKEQLLRTIQKMNQRMQRDLEAAAEVQQRLLPYSLPEIPGIKTNWYFQPCEQLAG 303 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVL---AALLLRALFNGLLQEQLAHQNQRLPELG 242 L + + L Y LDV+ G L +A+ L + N L Sbjct: 304 DALGVFKIDAEHLGLYVLDVSGHGVPAALLAVSAVQTLQLHATSPESSSGSCNSILHTPQ 363 Query: 243 ALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGV 299 +++ ++ ++ G + L AG G +V + G Sbjct: 364 QVMELLDREFPLERFDKFLTIVYGVLNTNSGCLQYSVAGHPPPFLVHRDGYTEVLDTGGS 423 Query: 300 PLGTLGN 306 +G G Sbjct: 424 FVGLGGA 430 Score = 58.3 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 6/126 (4%) Query: 8 KQILIVEDEQVFRSLLDSWFSSL-GATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 K IL+V E + L G +A A L + L++ D+ +P Sbjct: 2 KHILLVIAENGLATTLQEALQDHFGGEVHVAESLQTARTALQWCSYSLVLTDLRLPDAPH 61 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + ++ + G P++V+++ + + L G+ D + KD ++ V + Sbjct: 62 GECIDALLQTG--VPIIVLTSDLSSEGRQELLDKGIVDYI---FKDEPQVISDVIQAIER 116 Query: 127 SMFNSR 132 + N Sbjct: 117 TDKNRE 122 >UniRef50_B1HNT1 Phosphoserine phosphatase rsbP n=74 Tax=Bacillales RepID=B1HNT1_LYSSC Length = 381 Score = 175 bits (445), Expect = 2e-42, Method: Composition-based stats. Identities = 57/310 (18%), Positives = 125/310 (40%), Gaps = 37/310 (11%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGAT-TVLAADGVDALELLGGFTP-------DLMICDI 59 IL+V+D QV +++ + G V + + + L P DL++ DI Sbjct: 1 MTILLVDDNQVNLFVIEKILKNAGYEHCVSLSSANELFDYLQLNEPNPTGSSVDLILLDI 60 Query: 60 AMPRMNGLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP ++G++ + I+ R ++ ++A E+ +A+AL +G D + KP+ L Sbjct: 61 MMPEVDGIEACKRIKQIERLRDIQIIFVTALEDKNKLAEALDIGGVDYITKPINKTELLA 120 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQ-PPVQQVISHCRVNYR 176 + A + + + E+++ + D A + + L PP+ + V+Y Sbjct: 121 RIRVALRLKAELDWHTQHEKKIQYELD-------LATHVQRSLLSPPLNEKDIRLEVSY- 172 Query: 177 QLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQ 236 L +++ G + + ++ A LD+ G + L + + ++ +++ Sbjct: 173 -LPSSNLAGDMYYWHKIDDHRYAIILLDMMGHGISAALVCMFISSVLREAVKQ------- 224 Query: 237 RLPELGALLKQVNHLLRQANLPG-----QFPLLVGYYHRELKNLILVSAGLNATLNTGEH 291 L + ++K++N + F + + K + ++AG A G Sbjct: 225 -LNDPELVIKELNRYMALLQDGKDENLYYFTAIYLVIDTKQKTVEYINAGHPA----GYA 279 Query: 292 QVQISNGVPL 301 V +PL Sbjct: 280 LVDEKTCIPL 289 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 172 bits (436), Expect = 2e-41, Method: Composition-based stats. Identities = 63/242 (26%), Positives = 103/242 (42%), Gaps = 26/242 (10%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +G++IL+V+DEQ R L S G LA +G ALEL+ PDL++ DI MP M+ Sbjct: 1 MGRKILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G+++L+ I+ R Q PV++I+ + +A++ G D +LKP + + E V Sbjct: 61 GIEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPF-PVEVIDETVRKVFK 119 Query: 126 PSMFNSRVEEE--------ERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 + + E D ++ A +LL+ R Sbjct: 120 QRQGEAALGSEGATPAAAVPAAASDQRTVIGRDAHFLRLLERA---------------RA 164 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQ-EQLAHQNQ 236 + ++ LVL + + A + V+ G AL AL GLL+ E H+ Sbjct: 165 VASSKATVLVLGESGTGKEVFARFIHHVSDR-KAGPFVALNCAALPEGLLESELFGHEKG 223 Query: 237 RL 238 Sbjct: 224 AF 225 >UniRef50_Q3IED7 Putative response regulator n=3 Tax=Alteromonadales RepID=Q3IED7_PSEHT Length = 549 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 64/308 (20%), Positives = 120/308 (38%), Gaps = 19/308 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 IL+V+D+ + R LL + G T LA +GV AL++L D+++ D+ MP M+G Sbjct: 2 MHILVVDDQALNRILLQRLLTQEGYTVSLAYNGVAALKILSQTPIDIVLLDVVMPIMDGF 61 Query: 68 KLLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA-CL 124 + + I+ R + P++ I+A ++ A + L +G +D + KP + + L + A C Sbjct: 62 ETAKIIKQRFNDIHLPIIFITALDDHASFERCLAVGGDDFIQKPFEKV-ILHAKIKAHCR 120 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 + +++ L + + Q +H N A Sbjct: 121 TRELSKKANQQKILLEEHQNQREREYEIIEHIFNNSLENQDQFKTHLDFN--LSPATMFN 178 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 G + +A +L D T G + AL +F ++++ +A + + Sbjct: 179 GDMFLVAQSPIGNLYCMLGDFTGHGLAAAIGALPASRVFYTMVKKGMA--------VHDI 230 Query: 245 LKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL----NTGEHQVQISNGV 299 +++N LL F + K++ GL T + S + Sbjct: 231 ARELNLLLYNLLPGHMFCAATIIELSASGKSISAWLGGLPDTYLIDKQGNLKKTLESQHM 290 Query: 300 PLGTLGNA 307 LG L N Sbjct: 291 ALGILNNQ 298 >UniRef50_C6CXV6 Response regulator receiver modulated serine phosphatase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXV6_PAESJ Length = 381 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 48/310 (15%), Positives = 119/310 (38%), Gaps = 26/310 (8%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGAT-TVLAADGVDALELL--------GGFTPDLMICDIA 60 I+IV+D + ++ + G + A+ + ++L +L++ D+ Sbjct: 3 IIIVDDNTTNQLIIQTILKKAGYQNLLTASSAHELYDMLGIGGSTTSADLDVELILMDMM 62 Query: 61 MPRMNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP ++G++ + R P++ ++A + +A+AL G D ++KP+ + L Sbjct: 63 MPDIDGIEACRTVLQDCRYKDIPIIFVTAVGDSNKMAEALDAGACDYVMKPINRMELL-A 121 Query: 119 MVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQL 178 + + + R +E ++ R N A ++ + + + R+N Sbjct: 122 RIRSSMRLKQEIDRHKERDKNMRY------NLELAKQVQLSVL-STEIDDENMRINAAYQ 174 Query: 179 VAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRL 238 +++ G + + +N LD+ G + L + + ++ L++ + N Sbjct: 175 PSSELAGDFYNWYRIDKNRYGVILLDMMGHGISSSLVCMYISSV----LRDTITRMNDME 230 Query: 239 PELGALLKQVNH-LLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN--TGEHQVQI 295 + L + +N ++ + F + E K + V+AG + G+ + Sbjct: 231 QVMHELNRYMNQLHIKDELMNYYFTAIYLVLDVENKTIEYVNAGHPPGIAFLDGKPALLE 290 Query: 296 SNGVPLGTLG 305 +G Sbjct: 291 PCCSAIGLFN 300 >UniRef50_A0LDH6 Response regulator receiver protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LDH6_MAGSM Length = 393 Score = 171 bits (433), Expect = 4e-41, Method: Composition-based stats. Identities = 58/318 (18%), Positives = 126/318 (39%), Gaps = 20/318 (6%) Query: 1 MTQ-PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDI 59 M++ L+ +L+VED+ R ++ G + A +G +A++L T DL++ D Sbjct: 1 MSEISLIPATLLLVEDDPDQRIIMQRKLQQQGYKVICAENGEEAVDLYNNNTIDLVLMDA 60 Query: 60 AMPRMNGLKLLEHI--RNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK---DLN 114 +P M+G + I G + PV++I++ EN + +A ++G E+ + KP+ + Sbjct: 61 QLPGMDGFEACFLITHTETGSRCPVMMITSLENSESVDRAFQVGAEEYVPKPIHWKVLMQ 120 Query: 115 RLREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQV--ISHCR 172 R+R + + + + + + + + + +L++E+ ++Q I+ Sbjct: 121 RIRRQIKSRRVHQEVVQARDALSQAYSEVTEVRERLSFERRLVEEIVSRMRQSAPINRHN 180 Query: 173 VNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLA 232 + G ++ A + D T G + L+ +F + + +A Sbjct: 181 LRTLFNPVEATSGDIILSAIRPDGAQHVMMGDATGHGLPAAIIGPLVSDIFYSMTNKGMA 240 Query: 233 HQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNATLNTGEH 291 +L ++N L G F + +L +AG L + Sbjct: 241 --------PAVILSELNSQLNAKLPTGIFLACCWISLNSSRDHLEYWNAGTPDILMVRQG 292 Query: 292 QVQISN---GVPLGTLGN 306 ++ +PLG L Sbjct: 293 KIFKRGQSCNIPLGVLRA 310 >UniRef50_Q2BJS2 Sensor histidine kinase/response regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJS2_9GAMM Length = 571 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 61/302 (20%), Positives = 114/302 (37%), Gaps = 22/302 (7%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +++L+V+D ++ R +L S LG V A G+ A+++ P L++ D+ MP M+G+ Sbjct: 15 ERVLVVDDMRLNRQILGQMISDLGLQPVYAETGLQAIQIYEEQKPSLILMDVNMPEMDGI 74 Query: 68 KLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 + I+ P++ +S E I +A+ G +D + +P L ++A Sbjct: 75 EATRQIKELAGDRFIPIIFVSGAEGQDVIREAIDAGGDDFIQRPF-PFELLEGKIYALRR 133 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + +V L A +LL + R++ + A G Sbjct: 134 IAQLYRQVNRLNHL------RAREEEVAEQLLSGAVESANAALDQIRIH--KQPAETFSG 185 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 V A +L D T G + AL L F + + + ++ Sbjct: 186 DVQLSAFRPNGELNVLLGDFTGHGLTSTVGALPLSETFRAMTAKGY--------DAEEIV 237 Query: 246 KQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQ---ISNGVPLG 302 Q+N L++ G F + + + + GL + + +V S PLG Sbjct: 238 GQINRKLQRLLPTGMFLATGIVTLSQDGSAKIWNGGLPDIMVVSKGKVVHRTESKHPPLG 297 Query: 303 TL 304 L Sbjct: 298 IL 299 >UniRef50_C5V035 Response regulator receiver protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V035_9PROT Length = 570 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 68/301 (22%), Positives = 120/301 (39%), Gaps = 23/301 (7%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L V+D R L+ + +G LA DGV AL L PDL++ D++MP ++G Sbjct: 9 VLAVDDSNTNRQLILAMLKKMGHRVTLAEDGVHALALCDECRPDLVLMDVSMPVLSGFDT 68 Query: 70 LEHIRNRGD-QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 + +R R P+L +SA + ++ + L G +D L KPV + L+ + Sbjct: 69 VREMRRRYAGWFPILFLSAQTSNHEVLEGLHAGGDDYLFKPV-NYEILQAKIHN------ 121 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVL 188 F R+E+ L + + A +++ I V + A + G ++ Sbjct: 122 FQIRIEQNLSLLEYHARIEEETDTARDFIKQF--TALDKIHDPLVRFFLKPAENFSGDLI 179 Query: 189 DIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQV 248 +A +N L D G LA + + F + + A L A+++++ Sbjct: 180 SVARGPDNCLHVLLADSAGHGLTAALAVIPITQPFYQMTAKGFA--------LPAIVREL 231 Query: 249 NHLLRQ-ANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGE----HQVQISNGVPLGT 303 N +R+ LP V + + + G L GE S +PLG Sbjct: 232 NRRVREYLPLPRFVAASVLSLDPATGIVQVWNGGCPPVLLLGEGADILHRFNSRHLPLGV 291 Query: 304 L 304 + Sbjct: 292 V 292 >UniRef50_Q04UP8 Serine phosphatase, regulator of sigma subunit n=6 Tax=Leptospira RepID=Q04UP8_LEPBJ Length = 376 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 104/295 (35%), Gaps = 23/295 (7%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +L V+D ++ L+ LG A DA +L D+++ D++MP +G Sbjct: 10 TVLAVDDSEINLKLIVHTLKPLGFQIFTAESAADARSVLLTNRVDVLLLDVSMPDQDGFS 69 Query: 69 LLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +R R P+L I+ +A+ G +D + KP + L + A + Sbjct: 70 FCRELREIERFKLLPILFITGINREVGFDEAISHGGDDFIQKPFQP-KELIAKIRAFIRI 128 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 + V E++R + A K+ QEL P + + V+ G Sbjct: 129 KILQDEVLEQKRNYE------RELIMARKVQQELLPEKELEWNGVSVSTIFQPLMQIGGD 182 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 D A + + L + D + G + L A +L+ + L Q + ++ Sbjct: 183 YTD-AWIENDSLHIFIADCSGHGPSAALLAAMLKMQVSSLSPNQSLQEK---------VQ 232 Query: 247 QVNHLLRQANLPG-QFPLLVGYYHRELKNLILVSAGLNATL--NTGEHQVQISNG 298 + H L + G R+ N + G + GE + G Sbjct: 233 TLRHNLEKILPDEFSITFFYGIL-RKDLNFEYSNGGHPPPILYQNGEVTILSGMG 286 >UniRef50_B3E9J8 Response regulator receiver protein n=1 Tax=Geobacter lovleyi SZ RepID=B3E9J8_GEOLS Length = 566 Score = 168 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 67/307 (21%), Positives = 126/307 (41%), Gaps = 20/307 (6%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L VED+ V +L+ L A +G + L+ PDL++ D+ MP M+G+ + Sbjct: 15 VLCVEDDPVGAALIRKMLEPLFGHVYSATNGAEGLQQFYQQQPDLIVSDLMMPVMDGIGM 74 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 L IR +TPVL+++A+ + +A+ LGV L KP++ ++ L+ +FA ++ Sbjct: 75 LREIRKSNQKTPVLLMTASLEHVHLVEAINLGVSKFLAKPLR-VDALQRALFAV-TRELY 132 Query: 130 NSRVEEEER-----LFRDWDAMVDNPAAAAK-----LLQELQPPVQQ---VISHCRVNYR 176 RV E+ R L + + A+ ++ L V+ Sbjct: 133 LERVAEQARQQEVELLQYRNRYHSRQQELAQAKERHIVSNLLETQYLRHADHGGWLVDLL 192 Query: 177 QLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQ 236 Q G + ++N L + D G + + ++L A FN +Q + + + Sbjct: 193 QQPRDIMSGDSYSVVRTNDNTLLLFLADAMGHGLSASVTSMLATAFFNYAVQGYSSGELE 252 Query: 237 RLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL--NTGEHQVQ 294 +++ L + + F LV + K++ L S G+ A L G + Sbjct: 253 FAALATSVMNFAAQNLLEDEV---FSGLVLELDPQRKSVQLASCGMPALLLARNGRVERI 309 Query: 295 ISNGVPL 301 P+ Sbjct: 310 RGANPPV 316 >UniRef50_A0YTY5 Sensor protein n=6 Tax=Bacteria RepID=A0YTY5_9CYAN Length = 1012 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 66/311 (21%), Positives = 120/311 (38%), Gaps = 34/311 (10%) Query: 10 IL--IVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG-FTPDLMICDIAMPRMNG 66 IL IV+DE + +L + S T A+DG +AL +L + PD+++ D+ MP+M G Sbjct: 637 ILVFIVDDEPINLQVLMNMLSLHDYTITQASDGEEALAILETGYKPDIILLDVMMPKMTG 696 Query: 67 LKLLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 ++ + IR R T P+L+++A + DI L G D L KP+ + L + + Sbjct: 697 YEVTQKIRERFTTTELPILLLTAKTQVQDIVTGLGFGANDYLNKPIAK-DELLARMKTQI 755 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPP--VQQVISHCRVNYRQLVAAD 182 + E RL + + + KL + + P + I + A + Sbjct: 756 NMCRLRA---ENIRLSAEVEVI-------KKLQKMVLPKDVELESIQDLEIASFIQPADE 805 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 G D+ +N + DVT G L ++ + L++ + Sbjct: 806 VGGDYYDVLQY-DNQVKIGIGDVTGHGLESGLLMIMAQTAVRTLIES-------LETDPI 857 Query: 243 ALLKQVNHLL--RQANLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQ--I 295 + +N L + + + K++ L S + GE + + Sbjct: 858 KFMDILNRTLYGNIQRMNSSKNMTLALLDYADKSIKL-SGQHEEVILVRADGEVERIDTV 916 Query: 296 SNGVPLGTLGN 306 G P+G G Sbjct: 917 DLGFPIGLDGE 927 >UniRef50_Q15VH2 Response regulator receiver protein n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15VH2_PSEA6 Length = 548 Score = 168 bits (426), Expect = 3e-40, Method: Composition-based stats. Identities = 55/306 (17%), Positives = 116/306 (37%), Gaps = 18/306 (5%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGA-TTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 +ILIV+D+ + R LL G A G +A+ L P+L++ D+ M MNG Sbjct: 1 MRILIVDDDSLNRFLLLHMLEQKGYVDCYEAESGHEAVSLAKRINPELVLLDVMMDDMNG 60 Query: 67 LKLLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 ++ ++ + P++ I+A ++ + + L +G +D + KP L + A Sbjct: 61 YEVAPILKEQAGDIYLPIIFITALDDEESLVRCLEVGGDDFVAKPFNK-TILAAKISAHA 119 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 + + E+ + + + V+ + + + + +++ + A D Sbjct: 120 RTRELSKKSYEQNQQLVFYRSAVEREHKIVEHIFSNAVTNDKKLLPY-IDFTLMPATDFN 178 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 G +L +A L + D T G + AL + F+ + + L + + Sbjct: 179 GDLLLFSASPNGGLYYLIGDFTGHGLAAAIGALPVSQAFHTMASKGL--------SVFEM 230 Query: 245 LKQVNHLLRQANLPGQFPLLVGYYHRELKN-LILVSAGLNAT----LNTGEHQVQISNGV 299 + +N L + F + + ++G+ LN + S + Sbjct: 231 AQTLNETLLKLLPGDMFFAAAIVHISSTGTRFEIWNSGMPDLLLFDLNGQVIKRFGSQHM 290 Query: 300 PLGTLG 305 LG L Sbjct: 291 ALGILE 296 >UniRef50_B8FJD4 Sensor protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FJD4_DESAA Length = 949 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 86/158 (54%), Gaps = 8/158 (5%) Query: 1 MT-QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDI 59 MT QP+ +IL V+DE+ ++ + ++ VLA DG+ LE +PDL++ D+ Sbjct: 1 MTDQPI---KILAVDDEKAIQNSVSAYLQDYDFEVVLADDGIMGLEKFRTESPDLVLLDL 57 Query: 60 AMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 MPRM+GL++L+ I+ TPV+VIS +++ ALR G D L+KP+ DL+ L Sbjct: 58 RMPRMDGLQVLKEIKKESPLTPVIVISGAGGVSEAVNALRNGAWDYLIKPINDLDILYHA 117 Query: 120 VFACLYPSMFNSRVEEEERLFRD----WDAMVDNPAAA 153 + L + +E R+ + A+++N +A Sbjct: 118 IINALEKARLTRDNKEFAEKIRESEERYRALIENAGSA 155 Score = 128 bits (322), Expect = 3e-28, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 6/133 (4%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+ ED V + + S LG A+G +A++ L ++ D MP M+G + Sbjct: 695 ILVAEDNPVNQKVALSILKKLGLRAEAVANGREAVKALCEKKYTMVFMDCQMPDMDGYEA 754 Query: 70 LEHIRNR-----GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 IR+R +TPV+ ++A D K + G++D L KPV+ L EM+ L Sbjct: 755 TRRIRSRRSCVLDPKTPVIAMTAHAMEGDRKKCIEAGMDDYLSKPVEP-GALIEMIHKWL 813 Query: 125 YPSMFNSRVEEEE 137 ++ E+ Sbjct: 814 PEKTEAEKIIPEK 826 Score = 56.8 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 10/155 (6%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-----GFTPDLMICDIAM 61 K++L+V + R L + S A G +ALE L L I D + Sbjct: 542 NKRVLVVAENAATRLQLVNMLKSWSCRPEEAQGGGEALEKLRLAAASQDPFALAIADNKL 601 Query: 62 PRMNGLKLLEHIRNRGDQT---PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 M+G + L + + + L+++ D + G E L KPVK + L Sbjct: 602 KDMDG-ETLGRLAKKDIKLADAHWLIMTFMGKRWDEFRMKSAGFEGCLTKPVKQ-SALYN 659 Query: 119 MVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAA 153 + + L + ++ + R + P + Sbjct: 660 SLVSALNAEGGSHKISKPPRFEMPSLTTLQRPDVS 694 >UniRef50_UPI0001699C5B response regulator receiver protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699C5B Length = 300 Score = 167 bits (423), Expect = 6e-40, Method: Composition-based stats. Identities = 55/276 (19%), Positives = 110/276 (39%), Gaps = 20/276 (7%) Query: 11 LIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLL 70 L+ +DE R +L++ LG + A DG DA+E + D+++ D+ MP M+G Sbjct: 19 LVADDELSNRVILNALLKKLGYQVIQAVDGADAVEKFRQHSIDIVLMDVMMPVMDGYAAT 78 Query: 71 EHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 E I++ PVL ++A + +A+ + +G +D L KP ++ A + Sbjct: 79 EIIKSETADKFIPVLFLTAMTDDKALARCIEVGGDDFLTKPYN-----HTVLSAKIQSME 133 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVL 188 + ++ R+ ++ M + A ++ V+ ++++ A+ G ++ Sbjct: 134 RIQNLHQDIRML--YNRMQMDEEIAEQVFSGAVLAGNVVLD--QISHLHKPASIFSGDIM 189 Query: 189 DIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQV 248 A +DL D T G L AL +F + + +L+ + Sbjct: 190 LTAYSPSHDLHVLLGDFTGHGLAAALGALPTSEVFRSMTAKGF--------SPPQILQGI 241 Query: 249 NHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLN 283 N L + G F L + + + G+ Sbjct: 242 NSKLHKMLPTGMFLAAQFVKISASLDYITVFNCGMP 277 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 166 bits (421), Expect = 1e-39, Method: Composition-based stats. Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 1/144 (0%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + +ILIV+DE R+L+ S G V A +G +AL+ + + L+I D+ MP M+ Sbjct: 1 MDTKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G ++ E IR P+L+++A D K L +G +D L KP K L V A L Sbjct: 61 GWEVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKP-EELIARVNALLR 119 Query: 126 PSMFNSRVEEEERLFRDWDAMVDN 149 ++ N + ++ F + VD+ Sbjct: 120 RAVVNQTTQTKQLHFHELKMDVDD 143 >UniRef50_B5EE19 Response regulator receiver modulated serine phosphatase n=2 Tax=Geobacter RepID=B5EE19_GEOBB Length = 396 Score = 166 bits (420), Expect = 1e-39, Method: Composition-based stats. Identities = 62/318 (19%), Positives = 99/318 (31%), Gaps = 28/318 (8%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 IL+V+D + R ++ G A D AL L G L++CDI MP NG+ Sbjct: 4 TILVVDDSKSMRRIIVDSLKDEGYECRSAEDVDTALIALDGCEFSLVLCDIEMPGRNGIF 63 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS- 127 LL IR T V++++ + + + LG D L+KP L RL V L Sbjct: 64 LLNEIRTTRPDTYVVMLTGVTDPETVMHCIHLGANDYLMKPFT-LERLLLTVRNALQQRK 122 Query: 128 -----------MFNSRVEEEERL---FRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRV 173 + +E+ E++ + + A + L P Sbjct: 123 LYLEHRSYQETLEQKVLEQTEQIRASLLEKALITKEMEIAGAIHAALVPRFIPSTPRLSF 182 Query: 174 NYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAH 233 L A G DI + + DV L + L Sbjct: 183 AAHYLSAGPLGGDYFDIFHRGDGLVDVVIADVAGHNIGSAL-------IVAQLRGALRVQ 235 Query: 234 QNQRLPELGALLKQVNHLLRQANLPGQ--FPLLVGYYHRELKNLILVSAGLNATL---NT 288 + +LK +N + + +L L AG N + Sbjct: 236 ASAARLGCAEMLKLINESFYEDLTGAEIFVSMLYLRLDEVSMQLQYACAGHNPGIMLRAD 295 Query: 289 GEHQVQISNGVPLGTLGN 306 G + G+ +G Sbjct: 296 GSVLELDAEGMIIGVARE 313 >UniRef50_C0QLH7 Sensor protein n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLH7_DESAH Length = 667 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 43/151 (28%), Positives = 76/151 (50%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL ++DE R+ + ++ + A +G ++ PDL++ D+ MP M+GL+ Sbjct: 8 RILTIDDEAFIRTSIRNYLEDCEFEVIEAENGRIGIDKFEREKPDLVLLDLRMPEMDGLQ 67 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 LLE ++ TP++VIS T N++ + +AL LG D +LKP++D++ L V CL S Sbjct: 68 LLEILKRLSPDTPLIVISGTGNISAVVEALHLGAWDYILKPIQDMSVLLHSVTKCLKESQ 127 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQE 159 + + AA++ L Sbjct: 128 LKRENKAYQEHLERLVRDRTQSLAASEQLYR 158 Score = 92.6 bits (229), Expect = 2e-17, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 3/118 (2%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG--GFTPDLMICDIAMPRMNGL 67 IL+V+D++ + F +LG + G++ALE D I D MP M G+ Sbjct: 546 ILVVDDDRNIADMYKEGFEALGYDVTVYYSGMEALEFFRNNSEKIDFAITDQTMPHMTGV 605 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 L + PV++ S + KA G+ ++KPV + L M+ L Sbjct: 606 DLSRGMLCVKPDLPVILCSGYPGEVNEEKATDAGIRRFVMKPVT-VGELSRMIQDVLK 662 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 69/122 (56%), Gaps = 2/122 (1%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +++LIV+DE R +L++ S +G V A+DG +AL L PD++I DI MP+++ Sbjct: 13 TKEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLD 72 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G + + IR + P+++++A ++AD L LG +D ++KP L + A L Sbjct: 73 GYGVCQEIR-KDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSP-KELEARIRAVLR 130 Query: 126 PS 127 + Sbjct: 131 RT 132 >UniRef50_Q0RR80 Putative regulatory protein n=1 Tax=Frankia alni ACN14a RepID=Q0RR80_FRAAA Length = 377 Score = 165 bits (419), Expect = 2e-39, Method: Composition-based stats. Identities = 65/303 (21%), Positives = 115/303 (37%), Gaps = 34/303 (11%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+D R +L SW G A+ G +AL + PDL++ D+ +P ++G+++ Sbjct: 8 VLVVDDSVSKRYVLGSWLRRAGYEVFEASSGEEALREVRDHVPDLVVLDVHLPDLSGIEV 67 Query: 70 LEHIR--NRGDQTPVLVISATE-NMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 I+ PVL +SA + D + L G + L+ P++ L V A L Sbjct: 68 CRRIKRDRESAGVPVLHVSAIAVDAGDRSIGLDEGADAYLVDPIEPREFL-STVGALLRQ 126 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA---ADK 183 S R EE R+ A L + L P ++ RV R + A+ Sbjct: 127 S---RRYAEEHRI-------------ALTLQRSLLPATLPDLAGLRVAARYHASAAQAEV 170 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGA 243 G D + + DV + LR + A Sbjct: 171 GGDFFDAFDTPDGEAFVVIGDVQGHSLGAAIIMAELRYALRAYAFDG--------HRPAA 222 Query: 244 LLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV---QISNGVP 300 +L ++N L+ ++ + + + + + +V+AG L G ++ + GV Sbjct: 223 VLDRLNRLMLLSHPEATATVCILTFPPDRSRVTIVNAGHLPPLLIGPDRLSYWEAGAGVL 282 Query: 301 LGT 303 LG Sbjct: 283 LGV 285 >UniRef50_A8ZSN7 Response regulator receiver protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZSN7_DESOH Length = 371 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 63/305 (20%), Positives = 116/305 (38%), Gaps = 27/305 (8%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 IL+V+D + LL + + G T+ A DG A +L PD+++ D+ MP +G + Sbjct: 6 TILVVDDNLLNLKLLSTTLENHGYKTITAVDGPTARQLAQTEKPDIILLDVKMPGEDGFE 65 Query: 69 LLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 ++ ++N PVL +S + LG D + KP L L V L Sbjct: 66 VIRQLKNDPATGGIPVLFLSGVIELESKLTGFELGAVDYITKPFHPLEVL-ARVRLHLKL 124 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQ-PPVQQVISHCRVNYRQLVAADKPG 185 S+ S + + D + + P Q + V Y L A G Sbjct: 125 SIATSSLISNQ---------ADKLRQITEAQTAMLTTPDNQPGAGFGVYYCALEEA--GG 173 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 D+ +S++ ++ D + + + L+ ++ + L + + Sbjct: 174 DFYDVLPISDDIYGYFVADFSGHD---IKTSYLISSV-----KALLKQNCTPIYRPSESM 225 Query: 246 KQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGVPL 301 K +N +L + +F +R+ KNL ++SAG + GE G + Sbjct: 226 KLINDVLVKILPEDKFLTSCYACLNRKTKNLTIISAGHPPVVYLPAKGEPSFIHLQGDVM 285 Query: 302 GTLGN 306 G+ + Sbjct: 286 GSFED 290 >UniRef50_Q2SPR3 Serine phosphatase RsbU, regulator of sigma subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPR3_HAHCH Length = 560 Score = 165 bits (417), Expect = 3e-39, Method: Composition-based stats. Identities = 60/304 (19%), Positives = 121/304 (39%), Gaps = 20/304 (6%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+V+D+ R L+ G A G ALE+ D+++ D+ MP MNG + Sbjct: 3 ILVVDDDMYSRQLMGFVLEEGGHKCEFAESGEQALEIWREQGADVVLMDVLMPGMNGYEA 62 Query: 70 LEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 I+ D P++ ++A ++ + + L +G +D L KPV + L+ + A Sbjct: 63 ARIIKAEAGQDHIPIVFLTALDDDRALVECLSIG-DDFLGKPVNFVT-LQAKIRAHSRTL 120 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAK-LLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 N +V E+ R + V + ++ + + R Y + G Sbjct: 121 ALNRQVVEQNRELAYFHTKVQAEHEMTQHIMTAALKLSAKDVYGIR--YHCTARSTFNGD 178 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 ++ + + D T G + ++ + F+ + + L + + Sbjct: 179 LVLLKEKRDGGAYVLVGDFTGHGLAASVGSIPVAQAFSTMCERNL--------SVSEISL 230 Query: 247 QVNHLLRQANLPGQ-FPLLVGYYHRELKNLILVSAGLN-ATLNTGEH---QVQISNGVPL 301 ++N +LR+ P F + + + L + GL A + +G++ +V S +PL Sbjct: 231 ELNKILRRFLPPTMFFAACLLEINSTRSKIELWAGGLPDAFIVSGDNKIRRVIHSAHMPL 290 Query: 302 GTLG 305 G + Sbjct: 291 GIME 294 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 93/207 (44%), Gaps = 9/207 (4%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M +P+ ++LI+ED+ L+ + G + + A+DG + LEL +PD +I DI Sbjct: 1 MKRPI---KVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIM 57 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 +P++NG ++ + IR P+++++ D+ K L +G +D ++KP D N L V Sbjct: 58 LPKLNGWEVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPF-DPNELIARV 116 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 L ++ + ++ + M + ++ P ++ + +N +Q++ Sbjct: 117 KTVLRRTILSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLT 176 Query: 181 ADKPGL-VLDIAALSENDLAFYCLDVT 206 + V + +DV Sbjct: 177 RQQLLDRVWGYEFNGDPR----TVDVH 199 >UniRef50_A3WN77 Response regulator of sigma subunit, serine phosphatase (CheY-RsbU) n=2 Tax=Idiomarina RepID=A3WN77_9GAMM Length = 560 Score = 164 bits (416), Expect = 4e-39, Method: Composition-based stats. Identities = 55/316 (17%), Positives = 118/316 (37%), Gaps = 27/316 (8%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +IL+V+D++ + +L +S G V A++G +AL L P L++ D+ MP M+G Sbjct: 1 MKILVVDDQKANQIMLTGLLTSFGHEVVCASNGREALGLFEQVQPQLILLDVMMPEMDGF 60 Query: 68 KLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 + ++ P++ ++A ++ + + L++G +D L P + + L+ V A Sbjct: 61 ETAPRLKAMSGNVHLPIIFLTALDSQDTLLECLKVGGDDFLSIPFEPV-VLQAKVNAHAR 119 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA-DKP 184 + + E+ R A ++ ++Q + + ++ ++NY + + Sbjct: 120 VRELSYSIVEKNRALAWHTARMEREQN---VVQHML---ENALADNQLNYSFVKSYLRAT 173 Query: 185 GLVLDIAALSE----NDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 L + + D T G AL + F + + L Sbjct: 174 SDFNGDVCLGRKGPFGNYYIFLGDFTGHGLAPATGALPVAQAFFSMAERGL--------S 225 Query: 241 LGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL----NTGEHQVQI 295 +G + + N+ L + F +V + + G+ L Sbjct: 226 VGDMATEFNNRLYKVLPDDMFCAAIVVEMSANGDRISCWNGGMPDALLLDAQGRLAHRIK 285 Query: 296 SNGVPLGTLGNAYLNQ 311 + LG L + N Sbjct: 286 PQHMALGILSRSEFNS 301 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 101/242 (41%), Gaps = 20/242 (8%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILIV+DE R +L + F+ G T A +G AL L PD+++ DI MP M+G+K Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 L+ +R+ +TPV++++A + +ALR G D ++KP DL+ L +V L Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPF-DLDELNLIVQRALQLQS 124 Query: 129 FNSRVEEEERLFR---DWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + + W ++ N A + + + ++ + Sbjct: 125 MKKEIRHLHQALSTSWQWGHILTNSPAMMDICK---------------DTAKIALSQASV 169 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 L+ + + +L + G + AL LL+ +L + L Sbjct: 170 LISGESGTGK-ELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTL 228 Query: 246 KQ 247 +Q Sbjct: 229 RQ 230 >UniRef50_Q10XK2 Adenylate/guanylate cyclase n=4 Tax=Bacteria RepID=Q10XK2_TRIEI Length = 351 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 95/204 (46%), Gaps = 10/204 (4%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+D Q R LL G A+DG ALE++ + DL++ DI MP+MNG ++ Sbjct: 8 VLVVDDNQFNRDLLARRVKRQGHMISSASDGFQALEMVRNHSFDLVLLDIMMPQMNGYQV 67 Query: 70 LEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 LE ++ PV++ISA +++ I + + LG ED L KP + L+ + ACL Sbjct: 68 LETLKADPALRHIPVIMISAVDDIDSIVRCIELGAEDYLSKPFNPI-LLKARINACLEKK 126 Query: 128 MFNSRVEEEERLFRDWDAMVDN------PAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 + + + + + PA A+ L++ + + S V + LV Sbjct: 127 RLRDQEQAYIKQLAEEQEKSEKLLLNILPAPIAQRLKQGEKTIADSFSEVTVLFADLVGF 186 Query: 182 DKPGLVLDIAALSE-NDLAFYCLD 204 K L A L E ++ F C D Sbjct: 187 TKVSANLSPAELVELLNMIFSCFD 210 >UniRef50_B8DLW6 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=5 Tax=Desulfovibrio RepID=B8DLW6_DESVM Length = 739 Score = 164 bits (415), Expect = 5e-39, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 4/135 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL ++D+ RS L ++ G + A +G LE PDL++ D+ MP M G++ Sbjct: 7 RILTIDDDVNVRSNLVAYLEDSGFDVIEAENGRRGLEAFTEHAPDLVLVDLRMPVMGGME 66 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 +LE +R + PV+V+S + + +ALR G D + KPV D+ L V L Sbjct: 67 VLERLREDAPEIPVIVVSGVGVLEEAVEALRHGAWDYVTKPVTDMRVLEHAVNKALE--- 123 Query: 129 FNSRVEEEERLFRDW 143 +R+ EE + +R+ Sbjct: 124 -RARLLEERKRYREH 137 >UniRef50_A0LBV4 Response regulator receiver protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LBV4_MAGSM Length = 365 Score = 163 bits (414), Expect = 6e-39, Method: Composition-based stats. Identities = 60/303 (19%), Positives = 109/303 (35%), Gaps = 31/303 (10%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+D+ + L+ + + G V AADG + P L++ D+ MP M+G Sbjct: 3 KILVVDDDPMSLMHLEYFLAQQGHEVVTAADGHQGVAAFEQIQPQLVLMDVMMPNMDGYT 62 Query: 69 LLEHIRNRG---DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 HI++ +Q PVL ++ + +A L G +D + KP ++ L+ + A L Sbjct: 63 ATGHIKSSSADRNQVPVLFLTGIADQTMLAHCLACGGDDFITKPFDNI-ILKARIDAWLR 121 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 R+E + R+ D + + + Y G Sbjct: 122 ------RIELDNRVKADRLKVEGVLLRMRE---------DDRFDGRNLRYLMTPLEKTNG 166 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 ++ A + D T G +A LL +F + E Q +L Sbjct: 167 DIILSARTPDGTQHTMVGDFTGHGLPAAIAGPLLSEIFYHDVAEGAPGQ--------HIL 218 Query: 246 KQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGVPL 301 +N L++ F + ++ L + G+ L S +PL Sbjct: 219 THINQTLQKKLPTAMFLCATYLTIGPDRNSVQLWNCGMPDLLIFDPDLTVHRLTSTHMPL 278 Query: 302 GTL 304 G + Sbjct: 279 GIM 281 >UniRef50_A9AW15 Adenylate/guanylate cyclase n=2 Tax=Bacteria RepID=A9AW15_HERA2 Length = 355 Score = 163 bits (414), Expect = 7e-39, Method: Composition-based stats. Identities = 53/198 (26%), Positives = 93/198 (46%), Gaps = 16/198 (8%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 TQP +IL+V+D + R LL VLA +G AL+ + T DL++ DI M Sbjct: 4 TQP----RILVVDDSEDNRYLLQRQLLRRNYGVVLAENGQQALDYVQSHTIDLILLDIMM 59 Query: 62 PRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 P MNG ++L++++ PV+++SA ++M ++ K +++G ED L KP LR Sbjct: 60 PVMNGFEVLQNLKQNEQLRHIPVIIVSAADDMENVVKGIQMGAEDYLAKPFNT-TLLRAR 118 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPV---QQVISHCRVNYR 176 + A L R+ ++E+ + A+ A + +LL+ + P Q + Sbjct: 119 IEASLEKK----RLHDQEQAY--LQAIALEQAQSNRLLRNILPQTIADQLKDQQANIAEY 172 Query: 177 QLVAADKPGLVLDIAALS 194 + ++ LS Sbjct: 173 FSSVSVLFADIVGFTELS 190 >UniRef50_A0L4R7 Response regulator receiver protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L4R7_MAGSM Length = 373 Score = 163 bits (412), Expect = 1e-38, Method: Composition-based stats. Identities = 65/326 (19%), Positives = 124/326 (38%), Gaps = 34/326 (10%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 ++ILIVED++ LL+S+ S G +LA DG A+E PDL+I DI +P +G Sbjct: 8 RKILIVEDDETSAWLLESFLRSEGYEVILARDGFAAVERYQSADPDLIIMDILLPGQDGY 67 Query: 68 KLLEHI----RNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 E I RN P++ ++A E+ A++A+ L G +D ++KP + L+ + + Sbjct: 68 AATEQIRAITRNEDSPPPIIFLTAIESDAELARCLDCGGDDFVVKPFNPI-ILKARIHSL 126 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 L EE++ +++D ++ + + + Sbjct: 127 LERLAL---AEEKQLALFQIASVLDKLRQSSHFQTS------------DLVFLERPLGRI 171 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGA 243 G V+ + + + D T G + L+ LF + + + Sbjct: 172 SGDVVLSTSKANGNRLVVIGDFTGHGLPAAICGSLVIPLFYEM--------AAADADTES 223 Query: 244 LLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLN-ATLNTGEHQVQISNGVPL 301 ++ +N L + G F V ++ K + + + GE PL Sbjct: 224 IIGSINTTLYEKLPSGFFMAASVIEFNPHAKQVTFWNFAAPGCFIRRGEAW----QAYPL 279 Query: 302 GTLGNAYLNQLSQRCDAWQCQIWGTG 327 L + QL + ++ + Sbjct: 280 YQLPLGAVEQLPKPLESATLAVQSND 305 >UniRef50_C4XN65 Response regulator receiver protein n=2 Tax=Desulfovibrio RepID=C4XN65_DESMR Length = 380 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 70/314 (22%), Positives = 117/314 (37%), Gaps = 33/314 (10%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSL-GATTVLAADGVDALELLGGFTPDLMICDI 59 MTQ +LI +D +FR +L +SL G + AA G+DA++L PDL++ D+ Sbjct: 1 MTQ------VLIADDNAIFREVLKRHVASLFGYDVIEAATGLDAVDLAETRHPDLILLDL 54 Query: 60 AMPRMNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP ++G++++ IR R P++ +SA + A+AL G D + KP + L Sbjct: 55 VMPGLDGIEVIRRIRANPRLADVPIIFLSAETDRRVWAEALSAGANDFMPKPYHR-SELA 113 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 + L + + + D + A + ++L P + S Sbjct: 114 ARINLHLKLASLGQELRRQN------DLLTRERYLAGCVQRQLLPRDLE-FSGLESAAVY 166 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 G D A + D++ G + + + L Q L Sbjct: 167 QAQEQVGGDFYD-AWDDGAAVYVLMADISGHGASAAMLMAACKGYLVSLRQAGLG----- 220 Query: 238 LPELGALLKQVNHLLRQANLPGQ-----FPLLVGYYHRELKNLILVSAGLNATLNTGEHQ 292 L+ +N +L L G + + R L +VSAG G Sbjct: 221 ---PVELVASLNAMLCDLLLGGDLDNMFMTMALCRIDRAAPLLTVVSAGHVPVYVLGRSG 277 Query: 293 VQI--SNGVPLGTL 304 + S G LG L Sbjct: 278 LTELPSQGPALGIL 291 >UniRef50_B3E861 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter lovleyi SZ RepID=B3E861_GEOLS Length = 462 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 16/208 (7%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + K IL+V+DE+ R L G + A +G DAL+L+ PDL++ DI MP M+ Sbjct: 1 MSKLILVVDDEESIRISLGGILEDEGYQVLHAENGADALDLIREEVPDLVLLDIWMPGMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G++ LE IRN V+++S + KA R+G D + KP L+++ + L Sbjct: 61 GIQTLEQIRNLFPDLTVVMMSGHGTIETAVKATRIGAFDFIEKPFS-LDKVLITIANALN 119 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLL----QELQPPVQQVISH----------C 171 E RL + + +A +LL Q + P V+ H Sbjct: 120 FKELRKE-NEALRLSALKEHEMVGASAGVELLRGQIQRIAPASTPVLIHGEEGVGKELVA 178 Query: 172 RVNYRQLVAADKPGLVLDIAALSENDLA 199 R + DKP + ++ A+ E LA Sbjct: 179 RAIHHYSTRRDKPFVAVNCMAVPEALLA 206 >UniRef50_A5F941 Sensor protein n=69 Tax=Vibrionales RepID=A5F941_VIBC3 Length = 1177 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 69/163 (42%), Gaps = 3/163 (1%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 G +L+ +DE V +LDS+ G A DG LE + P+L++ DI MP M+G Sbjct: 769 GPLLLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSG 828 Query: 67 LKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 ++ E +R D P+++++A D + G D L KP L + A L Sbjct: 829 YQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNK-QELAARIVAHL 887 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQV 167 S R E +L ++ A+ + L ++ Sbjct: 888 TASKAELRRIENAQLQKELKHRAMVEASLLETQGRLLEQLESA 930 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 162 bits (411), Expect = 2e-38, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 66/147 (44%), Gaps = 1/147 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILI+EDE R+ L G + AADG + L+ + PDL++ D+ MP+++G Sbjct: 3 RILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGFA 62 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 L +R + P+L+++A + D L G +D L+KP + L V A L Sbjct: 63 LCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFST-DELLARVRAMLRRHQ 121 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAK 155 R R MV A + Sbjct: 122 REKRAVATLRFGEVEIDMVKQTARRGR 148 >UniRef50_B8FI60 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FI60_DESAA Length = 452 Score = 162 bits (410), Expect = 2e-38, Method: Composition-based stats. Identities = 61/289 (21%), Positives = 109/289 (37%), Gaps = 30/289 (10%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILIV+DE L + G V A +G +A++ L +PDLM+ DI MP M+GL+ Sbjct: 5 ILIVDDEPSILDSLGGILTDEGFEVVTALNGYEAIKQLSKISPDLMLLDIWMPGMDGLET 64 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 L+ +R PV++I+ + +A +LG D + KP+ E V + ++ Sbjct: 65 LKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLS-----IEKVVVTINNALN 119 Query: 130 NSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISH-----------------CR 172 R+EEE R + + + E++ + V R Sbjct: 120 FRRLEEENLYLRKKALEKHSITGFSPAIMEVRNQINTVAPTDSWVLISGENGTGKEMVAR 179 Query: 173 VNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALL-LRALFNGLLQEQL 231 + +D P + ++ A++S+ F ++ A R F Q L Sbjct: 180 TIHHLSARSDHPMVTVNCASISKK---FMESELFGHEKGAFPGAKQRKRGRFELANQGTL 236 Query: 232 AHQ---NQRLPELGALLKQV-NHLLRQANLPGQFPLLVGYYHRELKNLI 276 + + +L+ + N ++ + V KNL Sbjct: 237 FFDEVGDMDMETQSRILRVLENQKFQRVGGGRTITVDVRVIASTNKNLE 285 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 161 bits (409), Expect = 2e-38, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 75/142 (52%), Gaps = 2/142 (1%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 ++L+V+D++ +L ++ G + + A DG +A++ PD+++ D+ +P ++G Sbjct: 1 MKVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGW 60 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 + + IR R P+++++A ++ AD L LG +D ++KP L + A Sbjct: 61 GVCKEIR-RTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVL-ARMRAIFRRL 118 Query: 128 MFNSRVEEEERLFRDWDAMVDN 149 SR + ER+ + DA++D Sbjct: 119 QPASRRDGGERILKVGDAVLDQ 140 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 54/224 (24%), Positives = 90/224 (40%), Gaps = 11/224 (4%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K +L+V+DE+ R +L + + G AA+G ALE++ D ++CDI MPRM+GL Sbjct: 9 KNVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQPFDFILCDIKMPRMDGL 68 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 L H V+++SA + +AL+ G D + KP K L L + Sbjct: 69 AFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLL-----ALKKA 123 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLV 187 R++ E R A + K++ + + +V A D LV Sbjct: 124 SERERLKRENIALRQQIATLGRGYTFGKIIAKSKAMQAVTDLITKVA-----AHDTTVLV 178 Query: 188 LDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL 231 + + +A L L + + LL+ +L Sbjct: 179 TGESGTGKELVA-RSLHFNSPRAPNALIPVNCGGIPENLLESEL 221 >UniRef50_Q1JYH3 Sensor protein n=2 Tax=Proteobacteria RepID=Q1JYH3_DESAC Length = 1152 Score = 161 bits (408), Expect = 4e-38, Method: Composition-based stats. Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 10/186 (5%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+V+DE V +L + +A G AL+L+ TPDL++ DI MP M G ++ Sbjct: 719 ILVVDDEPVNLQVLVNQLHVARYRVRIANSGQQALDLVEEETPDLILLDIMMPHMTGYEV 778 Query: 70 LEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 + +R + Q PV++++A ++D+ + + G D + KP + L V L Sbjct: 779 CQRLRRTYNAAQLPVIMLTARSRVSDVVQGFQAGANDYVAKPFSR-DILLARVRTQLQLG 837 Query: 128 MFNSRVEEEERLFRDWDAMVD---NPAAAAKLLQELQPPVQQVISHC----RVNYRQLVA 180 + E RL ++ + + L +L V ++ +++ A Sbjct: 838 RAYQTLAENMRLKKELEQRQQTELELRQTQRRLAQLLDSVDDMVITVNESREISFYNHSA 897 Query: 181 ADKPGL 186 A G+ Sbjct: 898 AQLLGV 903 >UniRef50_A7BVW4 Adenylate/guanylate cyclase n=1 Tax=Beggiatoa sp. PS RepID=A7BVW4_9GAMM Length = 594 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 73/173 (42%), Gaps = 7/173 (4%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++LIV+D V +L + ++A +G A+ + PD+++ DI MP M+G + Sbjct: 7 KVLIVDDNSVNLKILSRFLKKAHFEVIMAKNGESAITQVKNLKPDIILLDIMMPGMDGFE 66 Query: 69 LLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 ++ PV+ ++A E+ D K ++G D + KPV+ + + V L Sbjct: 67 TCRCLKANEESKDIPVIFMTALESTPDKVKGFKIGAIDYITKPVQ-MEEVLARVNTHLTI 125 Query: 127 SMFNSRVEEEERLFRD----WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNY 175 +R+ E+ + + A+ +++ + + + Y Sbjct: 126 RHLQNRLLEQNEYLKQEITKRQQAEEELRKFARAVEQSASAIVITDINGTIEY 178 >UniRef50_C7LPI5 Sensor protein n=1 Tax=Desulfomicrobium baculatum DSM 4028 RepID=C7LPI5_DESBD Length = 544 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 2/171 (1%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 +QP +L+V+D+ R+ + SS G T + A +G + L++ PDL+I D+ M Sbjct: 4 SQPKRPTTVLVVDDDPFIRATTGASLSSRGFTILQAGNGQEGLDMFQAHGPDLLIVDLKM 63 Query: 62 PRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVF 121 P MNGL+LL + TPVLV+S + + +ALRLG D L+KP+ L V Sbjct: 64 PVMNGLELLSRLSGVTPHTPVLVVSGEGGLDEAVEALRLGAWDYLVKPIVSPTVLLHAVD 123 Query: 122 ACLYPSMFNSRVEE--EERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISH 170 L + E+ + ++ A +L Q+ + I Sbjct: 124 KALERAALIRENEDYKLNLERQVQQRTLELQKANRELEQQFLKQQKLGIIG 174 Score = 42.5 bits (99), Expect = 0.023, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 49/120 (40%), Gaps = 8/120 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF--TPDLMIC-DIAMPRM 64 ++IL++E R+ + S + LG EL+ DL++ D + + Sbjct: 423 ERILVIESHPEVRTTISSCLTKLGYQIWQTDSVAHGCELVQEEPMRFDLILTEDGPLNSL 482 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 + L + +++ +A+ + +I V ++ KPV D+ L + + CL Sbjct: 483 D--MLCATAQKVNPALRIMLATASP-LGNIV-CSHHAVCRIISKPV-DMVTLGQALHHCL 537 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 160 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 65/250 (26%), Positives = 109/250 (43%), Gaps = 22/250 (8%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL-GGFTPDLMICDI 59 MT+ + ILI +D+ R LL F G T A G + L + DL+I D+ Sbjct: 1 MTKATEQRHILIADDDPGIRGLLCEVFDEEGYLTEPAEHGGEVLAKMTKKHPYDLLIMDV 60 Query: 60 AMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 MP +GL +LE +R G TPV++++A + +A+++G D ++KP D+ + + Sbjct: 61 RMPGQDGLTILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPF-DVEEVTLV 119 Query: 120 VFACLYPSMFNSRVEE-EERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQL 178 V S+V E E + F D M+ N A ++ +++ RV + Sbjct: 120 VKRLFDHQQLASKVRELEAKSFDPRDKMIGNSPAMQEIYKQI----------GRVAH--- 166 Query: 179 VAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQ-EQLAHQNQR 237 D L+ + LA + V A NG + + AL LL+ E H+ Sbjct: 167 --TDATVLITGETGTGKEVLA-NLIHVNSARRNGPMVKVNCAALPESLLESELFGHEKGA 223 Query: 238 LPELGALLKQ 247 GA+ ++ Sbjct: 224 F--TGAVAQR 231 >UniRef50_B8HVV8 Response regulator receiver protein n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HVV8_CYAP4 Length = 406 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 84/156 (53%), Gaps = 8/156 (5%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 ++ L G +IL+V+D + R LL G T L+ +G AL+LL + DL++ D+ M Sbjct: 169 SEDLTG-KILVVDDTLINRDLLSRRLERQGHTVKLSENGQQALQLLESQSFDLVLLDVIM 227 Query: 62 PRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 P+MNGL+LL +++ + PV++ISA + + + + LG ED L KP + L+ Sbjct: 228 PKMNGLELLRLMKDTPNWKDIPVIMISALDEVESAVRCIELGAEDYLTKPFNTI-LLKAR 286 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAK 155 + ACL + ++ER + A + AAA + Sbjct: 287 IKACLEKKY----LRDQERQYLHQVACLTEAAAAVE 318 >UniRef50_A4TY72 Stage II sporulation E n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TY72_9PROT Length = 430 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 127/318 (39%), Gaps = 27/318 (8%) Query: 9 QILIVEDEQVFRSLLDSWFSS---LGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 ++L+VED+ L+ A DA + LG D+++ D+++P + Sbjct: 47 RVLLVEDQPGDAMLVMIALRECRSTRFVVSHVATLADARDHLGREVMDVVLLDLSLPDSS 106 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL + + + PV+V++ ++ + ++AL +G +D L+K + R + A LY Sbjct: 107 GLDTVTKVLQVAPRMPVVVMTGLDDPSLASRALEVGAQDYLVK---SDDPGRAVERAILY 163 Query: 126 P-SMFNSRVEEE---ERLFRDWDAMVDNPAAAAKLLQELQPPVQQV-----ISHCRVNYR 176 + NS++E E E+L + + + A + +L P ++ R++ Sbjct: 164 AITRMNSQIEREHLSEQLAHEQQRVQEEMVVARTMQFDLLPRPDRLNPVLEKQGIRLHSY 223 Query: 177 QLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQ 236 + G + L + L+ D + G + A L + L+ E + Sbjct: 224 FEPCSGIGGDLWGCHDLGDGRLSLTAFDFSGHG----IGAALNVFRLHTLIDEHRS---- 275 Query: 237 RLPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL--NTGEHQV 293 L + ALL + LRQ GQF + G L AG + G + Sbjct: 276 YLGDPAALLNMLALSLRQLLGRGQFATMFAGIIDFANSELTWAGAGTPPPILFRGGRREF 335 Query: 294 QISNGVPLGT-LGNAYLN 310 + GVPLG A+ N Sbjct: 336 LDTRGVPLGLSAKPAHEN 353 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 Q+L+V+DE R+LL + + G A +G +ALE+ D+++ D+ +P M+G + Sbjct: 15 QVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQ 74 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 + + IR + D +L+++A D L +G +D L KP + L V++ + S Sbjct: 75 VCKKIREK-DHVAILMLTARSETKDKVYGLGIGADDYLTKPFEP-EELLARVYSLIRRSA 132 Query: 129 FNSRVEEEE 137 + +E Sbjct: 133 ITQSIRRQE 141 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 56/252 (22%), Positives = 99/252 (39%), Gaps = 9/252 (3%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +G++IL+V+DEQ R L S G +A +G ALE++ PDL++ DI MP M+ Sbjct: 5 MGRKILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMVESEAPDLVVTDIRMPEMD 64 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G+ +L+ I+ PV++I+ + +A++ G D +LKP + + E + + Sbjct: 65 GIAMLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPF-PVEVIEETIKKVMR 123 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + V D + + R + ++ Sbjct: 124 QQPRPAAVAPAAETGSPPPGRTDEGS-------RTVIGRDRHFLRLLERARTVASSKATV 176 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 LVL + + A + V+ G AL AL GLL+ +L + + Sbjct: 177 LVLGESGTGKEVFARFIHHVSDR-KAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMA 235 Query: 246 KQVNHLLRQANL 257 K+ L Sbjct: 236 KKGKFELAHGGT 247 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 160 bits (405), Expect = 7e-38, Method: Composition-based stats. Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 2/118 (1%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 I++V+DE+ R L+ + + G + A +G+ ALELL DL+I DI MP M+G++ Sbjct: 5 TIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGIE 64 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 IR P++++SA D L G +D + KP L L V + L Sbjct: 65 ACTKIREE-KNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPL-ELIARVKSQLRR 120 >UniRef50_B5YFU9 Sensor protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YFU9_THEYD Length = 356 Score = 160 bits (405), Expect = 8e-38, Method: Composition-based stats. Identities = 44/179 (24%), Positives = 80/179 (44%), Gaps = 10/179 (5%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + ILIV+D LL + G T A DG +AL+ + PDL+I D+ MP+M+ Sbjct: 4 SNQTILIVDDNIDTVELLRKRLKAEGYNTEEAYDGEEALKKVYEVYPDLIILDVMMPKMD 63 Query: 66 GLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G ++ + ++ +R P+++++A ++ K +G +D + KP D L V + Sbjct: 64 GYEVCQRLKTDDRTKFIPIIMLTAKSDVESKVKGFDIGADDYVPKPF-DYRELSARVRSL 122 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 + +V EEE+ + L E++ P+ + + Y L D Sbjct: 123 ITRKETAEKVIEEEKTESVRKLI-------DSLSHEIRNPIVSIAGFTKKVYDNLPPGD 174 >UniRef50_A0PWB4 Response regulator mprA n=284 Tax=Bacteria RepID=MPRA_MYCUA Length = 232 Score = 160 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 42/125 (33%), Positives = 71/125 (56%), Gaps = 1/125 (0%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + +IL+V+D++ R L S G T LA DGV+ALE++ PD ++ D+ MPR++ Sbjct: 1 MSVRILVVDDDRAVRESLRRSLSFNGYTVELAHDGVEALEMIASDRPDALVLDVMMPRLD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL++ +R+ GD P+LV++A +++++ L G +D L KP L L + A L Sbjct: 61 GLEVCRQLRSTGDDLPILVLTARDSVSERVAGLDAGADDYLPKPFA-LEELLARMRALLR 119 Query: 126 PSMFN 130 + Sbjct: 120 RTKLE 124 >UniRef50_A1ZFP4 Two-component hybrid sensor and regulator n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZFP4_9SPHI Length = 1269 Score = 160 bits (404), Expect = 9e-38, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 72/145 (49%), Gaps = 5/145 (3%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG--FTPDLMICDIAMPRMNG 66 +IL+V+DE V +L++ S A+DG+ AL+++ D+++ D+ MP+M+G Sbjct: 886 KILVVDDEPVNLQVLENHLSIQNYNITQASDGLKALKIIKESKEPFDIILLDVMMPKMSG 945 Query: 67 LKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 ++ IR R + PVL+++A DI + G D L KP + L + + Sbjct: 946 YEVCRTIRERFPLVELPVLMLTAKNQPKDIVEGFDAGANDYLTKPFSKVELL-SRIKTHV 1004 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDN 149 + + ++ ++++A ++ Sbjct: 1005 LLKLTSENLQTANEKLQEYNATLEQ 1029 >UniRef50_Q1Q5K2 Similar to two component response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q5K2_9BACT Length = 271 Score = 160 bits (404), Expect = 1e-37, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 105/229 (45%), Gaps = 16/229 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILIVED++ R++L+ + LG ++LA +G+ AL + PD+++ DI MP M+G + Sbjct: 6 RILIVEDKESNRNILNERINELGHISILAENGLSALAKVREQPPDIILLDIMMPEMDGYE 65 Query: 69 LLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +L H++ PV++ISA +M I + + G +D L KP + L+ + +CL Sbjct: 66 VLCHLKGNASWRHIPVIMISAIGDMDSIVRCIEKGADDYLTKPFNPV-LLKARIDSCLMK 124 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 + + E+ + D++ +D K + ++ +S N+ ++A + Sbjct: 125 KRLHDQEEQYRKRLEDYN--LDLERRVKKAARVGTQYLRNYVSDLPRNWAGILAIILGVV 182 Query: 187 ----VLDIA----ALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL 227 LSE+ + Y + +++ + L + Sbjct: 183 YILSFFSYFIIGLLLSEDYILEYL---HKLHKAAIVSYIPLAFIVESYY 228 >UniRef50_B9M7S9 Sensor protein n=7 Tax=Geobacter RepID=B9M7S9_GEOSF Length = 516 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 78/161 (48%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + K+ILIV+DE +L G T +A DGV+ LE + L++ DI MPR+ Sbjct: 1 MANKKILIVDDEPDIALILKLQLEDAGYRTAIARDGVEGLEAIDRDRFSLVLLDIKMPRI 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +GL++LE ++N + V++++A + +A++ G D + KP + L+++ A Sbjct: 61 DGLQMLERVQNLHPEVAVVMMTAHGSEDIAVEAMKNGALDYIAKPFSTEDVLQKVERAIQ 120 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQ 165 + +++L + M A LL + P + Sbjct: 121 LNKAKRDNIRLQQQLDEERQKMEAVLQGMADLLLAVDPEGR 161 >UniRef50_B5JH27 Sensor protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH27_9BACT Length = 482 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 72/132 (54%), Gaps = 3/132 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 IL+V+D R +++ + +LA GV ALELL TPD+++ D+ MP M+G + Sbjct: 8 TILVVDDNLGARRSIEALLTQESYRFLLADSGVVALELLEEHTPDVILLDVMMPGMSGFE 67 Query: 69 LLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + IR +R + P+++I+A ++ + + + G +D L KP+ + LR + + L Sbjct: 68 TCQKIRANSRVSEIPIIMITALDDEESMIQGIDAGADDFLSKPISKI-ELRSRIRSILRL 126 Query: 127 SMFNSRVEEEER 138 + F +E ++ Sbjct: 127 NRFRKLCDERQK 138 >UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZR73_OPITP Length = 452 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 122/305 (40%), Gaps = 36/305 (11%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M++P +IL+V+DE+ + + G A DG AL LL +L++ DI Sbjct: 1 MSEP--KARILVVDDERALCAGIQEALQREGHQVDAANDGASALRLLTQKAYNLVVTDIR 58 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP ++G++LL+ R RG T ++++A + +A+R G D L KPV DL RLR +V Sbjct: 59 MPELDGMQLLKAARARGRDTQFILMTAFGRVETAVEAMRAGAYDYLTKPV-DLKRLRAVV 117 Query: 121 FACLYPSMFNSRVEE-EERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHC-------- 171 L + E +RL R ++ + + + + V Q Sbjct: 118 AKALELQTVVAENSELRQRLQRAEPGLLLGESEPMRKVVAMAEEVAQSDVTVLIEGESGT 177 Query: 172 ------RVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHN-GVLAALLLRALFN 224 R+ + + A KP + ++ AAL+E+ ++ GH G + L Sbjct: 178 GKELVARLIHTRSARAKKPFIFVNCAALTES-----LVEAELFGHAKGSFTGAVADKLGR 232 Query: 225 GLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVG---------YYHRELKNL 275 L + L E+G L + L + G F ++ G K L Sbjct: 233 FHLAD---GGTLFLDEIGDLGAKGQGDLLRVLEDGAFRMVGGTELQRVNVRVITATNKRL 289 Query: 276 ILVSA 280 A Sbjct: 290 QEAVA 294 >UniRef50_B3E5T4 Response regulator receiver modulated diguanylate cyclase/phosphodiesterase n=1 Tax=Geobacter lovleyi SZ RepID=B3E5T4_GEOLS Length = 581 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 4/149 (2%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L + ILI++D+ R + + G A +G + + P L++ D+ MP + Sbjct: 4 LESRSILIIDDDDALRRSIVGYLEDTGFEVHQARNGYEGIRKFEELLPSLVLTDLMMPEL 63 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +GL ++ IR TP++VIS ++ + +R G D + KP+ D + L E++ Sbjct: 64 DGLGVVNAIRQHSPDTPIVVISGNGSVGYAIETMRQGAWDYITKPIHDFSVLEEVISTVT 123 Query: 125 YPSMF----NSRVEEEERLFRDWDAMVDN 149 S R+EE ER + A + + Sbjct: 124 ARSEEARASRKRLEELERSVDEQTAQLQD 152 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 159 bits (403), Expect = 1e-37, Method: Composition-based stats. Identities = 61/223 (27%), Positives = 93/223 (41%), Gaps = 14/223 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+DE + R L G T AA+G +ALELL G DL++ D+ M M+GL Sbjct: 38 RILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVLTDLMMQGMDGLD 97 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 LL +R R T V+V++ + +A+ G L KP DLN R +V L Sbjct: 98 LLRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPY-DLNEARALVQKALEKRR 156 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVL 188 V R+ V +A +Q L+ + QV +D L+L Sbjct: 157 LRQEVARLREQLRERSLPVPLLGSAPC-MQALKRTIAQVAP-----------SDVTVLIL 204 Query: 189 DIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL 231 + +LA + + A+ A LL+ +L Sbjct: 205 GETGTGK-ELAARMVHLFSRRSEARFLAINCGAFNEELLESEL 246 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 2/130 (1%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + +IL+V+DE+ R +L ++ + +A+DG +AL + F PDL+I D+ +P ++ Sbjct: 1 MNPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEIS 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G ++ + IR + QTP+L+++A D G +D L+KP L L + A L Sbjct: 61 GEEVCQKIR-QDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFS-LRELLARIKAILR 118 Query: 126 PSMFNSRVEE 135 S + E Sbjct: 119 RSNQKAEKAE 128 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 55/119 (46%), Gaps = 2/119 (1%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K+ILIVEDE+ R + + A +G + ++ PDL+I D+ MP+ +G Sbjct: 2 KKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGW 61 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +L IR + P+++++A D L +G +D L KP L V L Sbjct: 62 ELCGEIRQQS-NVPIIMLTAKGEERDRILGLTMGADDYLTKPFSP-RELVLRVQIILRR 118 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 44/127 (34%), Positives = 61/127 (48%), Gaps = 1/127 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILIV+DE R L+ G A DG AL LL G DL+I D+ MP M+G+ Sbjct: 74 KILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGMT 133 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 L +R R TPV++++A D L G +D ++KP L V A L +M Sbjct: 134 CLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSP-RELVARVKAVLNRTM 192 Query: 129 FNSRVEE 135 S + Sbjct: 193 PRSEASD 199 >UniRef50_A0LAN5 Response regulator receiver protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LAN5_MAGSM Length = 378 Score = 159 bits (402), Expect = 2e-37, Method: Composition-based stats. Identities = 57/303 (18%), Positives = 107/303 (35%), Gaps = 23/303 (7%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT-PDLMICDIAMPRMNGLK 68 IL+V+D +L + LA G AL PDL++ D+ MP ++G + Sbjct: 13 ILVVDDVPQNLDVLKGGLADA-YQVRLAVSGERALRAAQIEPLPDLILLDVMMPDIDGFE 71 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + ++ + PVL ++A M D L LG D + KP+ + ++ V L Sbjct: 72 VCRQLKANPLTAEIPVLFVTAKSEMVDELHGLALGAVDYISKPIS-IPIVQARVRTQLAL 130 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 N L R + ++ +++ +++ ++ + Y G Sbjct: 131 RRANC------MLQRHTEQLLRERNVIERIIIKMRD--ADHLNQRHLRYVISPVEKTAGD 182 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 +L L + D T G + L+ +F+ + + + A L+ Sbjct: 183 MLLATLLPDGRQWVLLGDFTGHGLPAAIGGPLVAYIFHTMATQNG--------QAIACLE 234 Query: 247 QVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNATLN-TGEHQVQISNGVPLGTL 304 Q+N L Q F +L G+ + + G S +PLG Sbjct: 235 QLNEQLCQRLPREFFLAFTLVEVSPARDTAMLWIGGIPSVYHFAGALHSIDSTLLPLGIF 294 Query: 305 GNA 307 + Sbjct: 295 ADE 297 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 34/132 (25%), Positives = 70/132 (53%), Gaps = 1/132 (0%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 + IL+ +D+ R++L G +A DG ++ + +PDL++ D+ MP+++G Sbjct: 5 NRHILVADDDPSIRTILRDLLEDEGYQVSIALDGEQVIDQVQQSSPDLILMDVRMPKIDG 64 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +++L+ +R RG P++V++A N + KA++LG D + KP DL+ + + Sbjct: 65 IEVLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPF-DLDDITRTINRFFEQ 123 Query: 127 SMFNSRVEEEER 138 +++V Sbjct: 124 QKLSTKVRGRAE 135 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 5/162 (3%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + +IL+V+DE L G +AA G +ALE L TPDLM+ DI MP M+ Sbjct: 1 MKPKILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEELRRDTPDLMLLDIWMPGMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL +LE I+ PV++IS N+ KA R+G D + KP+ E + + Sbjct: 61 GLAVLEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLS-----LERILVSIK 115 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQV 167 ++ R+EEE L+R + ++ ++ L+ +++ Sbjct: 116 NALDFHRLEEENLLWRQKAHRTSHMTGRSEAVESLREQIRRA 157 >UniRef50_A0LC21 Response regulator receiver protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LC21_MAGSM Length = 367 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 66/302 (21%), Positives = 114/302 (37%), Gaps = 31/302 (10%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +LI ED+ + +L+ + SLG ++A +G A+E+ PDL+ D+ MP M+G + Sbjct: 3 TLLIAEDDHAYALILEHFLLSLGHKVLIANNGEQAVEMFKIHQPDLIFMDVLMPAMDGHQ 62 Query: 69 LLEHIRN----RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 IR Q P+L ++A E+ +A+ L G +D + KP L+ + A L Sbjct: 63 ATREIRRLTLGDPVQVPILFLTAIESEKVLAECLECGGDDFISKPFST-TTLKARLNAWL 121 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 + EE R R +V+N + E + A Sbjct: 122 KKRHMS---EEMARDHRHIARVVENLRRDTRYYGENLRTIT------------CPMAQVS 166 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 G ++ A + +D T G + + L+ F + E AL Sbjct: 167 GDLILSAKRHDGTQLIAVVDFTGHGLSAAICGPLISHAFYTHFLAHI--------ETTAL 218 Query: 245 LKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLN-TGEHQVQISNG-VPL 301 L +N LL G F + + + L + G+ A ++ G +P+ Sbjct: 219 LFILNELLCHKLPEGMFMAAHFVELSPDQRQMRLWNFGMPACVHIDGSQIFLYGKHLLPM 278 Query: 302 GT 303 G Sbjct: 279 GI 280 >UniRef50_B7KDV4 Sensor protein n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KDV4_CYAP7 Length = 1383 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 41/180 (22%), Positives = 74/180 (41%), Gaps = 6/180 (3%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +IL+ +D R + S ADG+ ALE + PDL++ D+ MPR+N Sbjct: 628 ANGRILLADDNGDMREYVKRLLSQY-YEVETVADGIAALEAIRRHPPDLVLSDVMMPRLN 686 Query: 66 GLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G +LL+ +R ++ P++++SA + + L+ G +D L+KP L + A Sbjct: 687 GFELLQELRRNPLTEELPIILLSARAGEESLVEGLKSGADDYLVKPFS-ARELLARIEAT 745 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 L + + ++E+ R + + + R Y AA Sbjct: 746 LKMAQLRQQAAQKEQKLRAEAEAAR--QQITNIFESITDGFVAFDHQWRFTYVNQQAAQM 803 >UniRef50_Q3ME76 Sensor protein n=1 Tax=Anabaena variabilis ATCC 29413 RepID=Q3ME76_ANAVT Length = 1431 Score = 158 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 43/174 (24%), Positives = 73/174 (41%), Gaps = 10/174 (5%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +IL+V+D R + S A DG+ ALE L PDL++ D+ MPR++ Sbjct: 605 SSARILLVDDNADMREYVKRLLSRH-YVVETATDGLAALEALADHLPDLVLTDVMMPRLD 663 Query: 66 GLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G LL +R NR + P++++SA + L G +D L+KP L V A Sbjct: 664 GFGLLSALRSNNRTREIPIILLSARAGEEAKVEGLEAGADDYLIKPFS-ARELLARVEAT 722 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 L + E+++ R A + ++ + + ++R Sbjct: 723 LKLAQLRRDAMEQQQTLR------QEAETAKQNVETILSSINDGFYVLDRDWRF 770 Score = 133 bits (336), Expect = 7e-30, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L G Q+L+V+D+ R + GA + A ++AL++ PD+++ DI MP M Sbjct: 1305 LHGIQVLVVDDDTDTREFVAFLLEQAGARVITAVSALEALQVFTQSPPDILLSDIGMPDM 1364 Query: 65 NGLKLLEHIRNRGDQ----TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 +G L+ IR P + ++A D +AL++G + + KPV N +R +V Sbjct: 1365 DGYMLMRQIRALPPDQGGKIPAIALTAYAGEIDEKRALKVGFQRHISKPVDPDNLIRAIV 1424 >UniRef50_Q13JL7 Sensor protein n=9 Tax=Proteobacteria RepID=Q13JL7_BURXL Length = 1651 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 67/159 (42%), Gaps = 7/159 (4%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+V+D R + + G LA DG ALE PDL++ D+ MPR++G Sbjct: 661 RLLVVDDNADLREYMSRILRAAGHEVRLATDGQAALEAARQERPDLVLSDVMMPRLDGFG 720 Query: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 LL +R + TPVL++SA + G +D L KP L V L Sbjct: 721 LLRALRADPELRDTPVLMLSARAGEEARVDGIEHGADDYLTKPFS-ARELLARVSGNLQL 779 Query: 127 SMFNSR----VEEEERLFRDWDAMVDNPAAAAKLLQELQ 161 + + EE R + + AA L + +Q Sbjct: 780 ARLRRETETKLREESRTLEILNRVGSTVAAELDLNRAVQ 818 Score = 91.1 bits (225), Expect = 5e-17, Method: Composition-based stats. Identities = 54/229 (23%), Positives = 90/229 (39%), Gaps = 26/229 (11%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP-DLMICDIAMPR-MN 65 + +L+VED++ R+ + S LG + A D AL ++ P D++ D+ MP + Sbjct: 1377 ETVLVVEDDEEVRTTVVEMLSDLGYRVLKAKDAQSALAIVESGVPIDVLFTDVVMPGPLR 1436 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADI-----AKALRLGVEDVLLKPVKDLNRLREMV 120 +L R R VL S + A + + + L L KP R++ Sbjct: 1437 STELARKARERLPAIAVLFTSGYTDNAIVHSGRLDEGIEL-----LSKPYTHEALARKIR 1491 Query: 121 FACLYPSMFNSRVEEEERLFRDWD--AMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQL 178 + + + + E + D D AM D+ +A + + +P + V V R Sbjct: 1492 YVLQTQNPQAAEIAEAGQHLLDIDPPAMPDSADSADSVAAQPRPRILLVEDDELV--RAS 1549 Query: 179 VAADKPGLVLDIAA----------LSENDLAFYCLDVTRAGHNGVLAAL 217 A DI LSE+ ++ DV AG +GV AL Sbjct: 1550 TAELLRMFEFDILEAEGEHDAKQILSEHAISVMLTDVGLAGKSGVDLAL 1598 Score = 62.2 bits (150), Expect = 3e-08, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 35/81 (43%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+VED+++ R+ + A DA ++L +M+ D+ + +G+ Sbjct: 1536 RILLVEDDELVRASTAELLRMFEFDILEAEGEHDAKQILSEHAISVMLTDVGLAGKSGVD 1595 Query: 69 LLEHIRNRGDQTPVLVISATE 89 L + V+ ++ + Sbjct: 1596 LALEVCAGRPDLRVIFLTGYD 1616 >UniRef50_B8FKA0 Sensor protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FKA0_DESAA Length = 832 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 75/144 (52%), Gaps = 4/144 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 IL ++DE+ R ++ G + A +G LE+ P L++ D+ MP ++GL+ Sbjct: 11 TILTIDDEEAIRQSFAAFLEDFGYEVLSAPNGKVGLEIFKEKKPHLILVDLRMPEVDGLE 70 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 +L + +TP++V+S T +AD +AL LG D +LKP+K+L+ L + L Sbjct: 71 VLSSVTQASPETPIIVVSGTGVIADAVEALHLGAWDYILKPIKNLSILLHSIEKALE--- 127 Query: 129 FNSRVEEEERLFRDWDAMVDNPAA 152 R+ +E R +++ + + + Sbjct: 128 -RRRLIKENREYQEHLEFLVDSRS 150 Score = 98.8 bits (245), Expect = 3e-19, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 53/125 (42%), Gaps = 3/125 (2%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG--FTPDLMICDI 59 + P ++IL V+DE + LG T + + ALE+ DL++ D+ Sbjct: 706 SLPCGDEKILFVDDEGPVALMGKQMLERLGYTVTVETSSIAALEIFKAQPHNFDLVVTDM 765 Query: 60 AMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 +MP M G I P+++ + + A +G+ + ++KP+ ++ + Sbjct: 766 SMPLMTGDVFARKILETRPNMPIVLCTGFSEVVTQENAQAMGISEYIMKPMV-MSEIANT 824 Query: 120 VFACL 124 V L Sbjct: 825 VRKVL 829 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 69/135 (51%), Gaps = 2/135 (1%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + ++L+ +D+ R ++ +F + A DG +ALE++ PD++I D+ MP++ Sbjct: 30 MSTMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQL 89 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +G + IR + D TP+++++A + D L LG +D + KP + + A + Sbjct: 90 DGFEACREIRKKWD-TPIIMLTAKDEEFDRVLGLELGADDYVTKPFSP-REIVARIRAIM 147 Query: 125 YPSMFNSRVEEEERL 139 +VE+E L Sbjct: 148 RRLQPKPKVEDEAAL 162 >UniRef50_C6MU29 Response regulator receiver modulated diguanylate cyclase with PAS/PAC sensor n=1 Tax=Geobacter sp. M18 RepID=C6MU29_9DELT Length = 556 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 20/242 (8%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M+ P+ ++LIV+DE++ R L + +G V A +G +AL++ PD++ D+ Sbjct: 1 MSDPI---KVLIVDDEKMLRLNLRALLEDVGLRVVEAENGREALDVFASERPDIVFTDLR 57 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP M+G+ L+ +++ +TPV+V+S T M D +A+RLG D + KPV + + +V Sbjct: 58 MPVMDGMALIAALKSESPETPVIVLSGTVAMTDAIEAVRLGAWDYVTKPVLQADEIEIIV 117 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 L + E + +R+ + +EL+ ++ +V Sbjct: 118 KRTLE----RVALIAENKSYREHL-----EDLVRQRTRELKKAEEKFRGLLESAPDAMVI 168 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 D G ++ + A +E +T G + +L + + + L H+ Sbjct: 169 VDTSGAIVLVNAQTE--------HLTGYGRSELLGQKVELLIPERFRERHLVHRAGYFAS 220 Query: 241 LG 242 G Sbjct: 221 PG 222 >UniRef50_C6C248 Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C248_DESAD Length = 368 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 78/164 (47%), Gaps = 3/164 (1%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 IL+++DE R + + + G + A DG + LE+ PD ++ D+ MP+++G + Sbjct: 7 TILVIDDEDFVRETISDYLTDSGFNIIDAGDGEEGLEIFRRENPDAVLVDLNMPKVDGFE 66 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 +L + TP++V+S + D KA+RLG D + KP+ DLN L + L + Sbjct: 67 VLTQVSAESPDTPIIVVSGAGLIQDAIKAVRLGAWDFVTKPIVDLNILEHALGQGLERAT 126 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCR 172 ++E R +A V+ + +++ Q + + Sbjct: 127 L---IKENRRYKEHLEAEVEKRTEDLRNEIKVRREAQDALMAIQ 167 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 158 bits (400), Expect = 3e-37, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 2/120 (1%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K +LIVED R ++ + G +A++G + L PDL++ D+ MP M+GL Sbjct: 23 KTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDGL 82 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 + L R +Q PV+ ++A + D L LG +D + KP + L V A L S Sbjct: 83 EFLRRFRAT-EQVPVIFLTARDTELDKVLGLELGADDYVTKPFS-MAELLARVRANLRRS 140 >UniRef50_B8HVZ9 Sensor protein n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HVZ9_CYAP4 Length = 566 Score = 158 bits (399), Expect = 4e-37, Method: Composition-based stats. Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 4/162 (2%) Query: 1 MTQPLVGK-QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDI 59 M++ K IL+V+D +L + S+ G + A DG AL+ TPDL++ DI Sbjct: 1 MSEHTTEKGTILVVDDTPTNLEVLFDFLSNAGFKVLFAEDGESALQKANYITPDLILLDI 60 Query: 60 AMPRMNGLKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP M+G + + ++ G PV+ ++A + D K LG D + KP++ + Sbjct: 61 LMPGMDGFETCQRLKQNGSTRSIPVIFLTALTDTVDKVKGFALGAVDFITKPLQ-YEEVL 119 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQE 159 V L +++E+ + AA + + Sbjct: 120 ARVETHLRLQTLTRKLQEQNQRLEHEVQERKRAEAALQRQHQ 161 >UniRef50_C9YGM9 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YGM9_9BURK Length = 396 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 40/146 (27%), Positives = 67/146 (45%), Gaps = 8/146 (5%) Query: 1 MTQPLVGK-----QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLM 55 M +P + +ILI EDE R L G + A DG++AL + PDL+ Sbjct: 1 MDRPCSAQGECPVKILIAEDEPSLRENLQWMLELEGFEVLAACDGLEALAMAQTHKPDLV 60 Query: 56 ICDIAMPRMNGLKLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDL 113 + D+ MP ++G L++ +R P+++++A + D + LG +D L KP + Sbjct: 61 LTDVMMPGLDGFGLVKALRENPGSSTLPIIMLTARADRTDTRTGMNLGADDYLTKPCRR- 119 Query: 114 NRLREMVFACLYPSMFNSRVEEEERL 139 L E V A L S + ++ Sbjct: 120 EELLEAVHARLERSRIQQLAAQRMQM 145 >UniRef50_A9AWW6 Sensor protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWW6_HERA2 Length = 531 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 43/162 (26%), Positives = 70/162 (43%), Gaps = 4/162 (2%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILIV+D+ +L G T A G +AL +L PDL++ D+ MP M+G + Sbjct: 8 ILIVDDQTTNVMVLQRMLERAGYATACARSGFEALTMLEQQVPDLILLDVMMPEMDGYQT 67 Query: 70 LEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 L+ IR R P++ +SA + AD L LG +D + KPV + L + L Sbjct: 68 LQAIRERNHLPFIPIIFVSAKQTTADTVTGLDLGADDYVTKPVNR-DELLARMRVLLRLK 126 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVIS 169 + E+ R + + + ++ P I+ Sbjct: 127 HTRRALHREQERLRFLYRVSQTLHRSLDI-DQVLPEALNAIN 167 >UniRef50_A7BQZ3 Sensory box/GGDEF family protein n=1 Tax=Beggiatoa sp. PS RepID=A7BQZ3_9GAMM Length = 576 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 92/200 (46%), Gaps = 15/200 (7%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 MT+ ILIV+DE V R ++ S+ G V A +G +AL+ PDLM+ D+ Sbjct: 1 MTE---KSTILIVDDETVSRYTVEVLLSAEGYNLVFAENGEEALKKAAESIPDLMLLDVM 57 Query: 61 MPRMNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP M+G ++ + +R R + P+++++A ++ + + G +D + KP D LR Sbjct: 58 MPGMDGFEVCQRLRTNPRLAELPIVMVTALDDRDSRLRGIEAGADDFMSKPF-DRAELRA 116 Query: 119 MVFACLYPSMFNSRVEEEERL--FRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYR 176 V + + +E EE+L ++D + P L ++Q + ++ Sbjct: 117 RVRTITRLNRYRRLIETEEQLAYLANYDPLTKLPNRNL-----LLERLRQTLGRATRTHQ 171 Query: 177 QLVAADKPGLVLDIAALSEN 196 + A + + +++ Sbjct: 172 DI--AILALDLDNFQMINDG 189 >UniRef50_A4TWB5 Stage II sporulation E n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TWB5_9PROT Length = 395 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 53/280 (18%), Positives = 99/280 (35%), Gaps = 15/280 (5%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+D+ +L + A D + AL++ P L++ D+ MP M+G +L Sbjct: 7 VLVVDDDPANIMILSQTLRPE-HDVLFATDALKALDIAFHRLPHLILLDVMMPGMDGYEL 65 Query: 70 LEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 ++ + PV+ I++ E+ K L+ G D + KP +R V L Sbjct: 66 CRRLKADSVTAEIPVIFITSLEDKESEIKGLQCGAVDYIPKPFNPP-VVRARVHNHLEMV 124 Query: 128 MFNSRVEEEERLFRDWDAMV-DNPAAAAKLLQELQPPVQQVISHC-RVNYRQLVAADKPG 185 + + + + MV A+++ + P + + G Sbjct: 125 RARINLRQYNQQLESANRMVAAGLRYASRIQGAMLPDLADLQGAVAETAVLWRPLDVVGG 184 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 A + + F +D T G G A++ A +L++ R+ A L Sbjct: 185 DYY-WAGMHGDVSVFALIDCTGHGVPGAFMAVVAAASLAQVLRDSRTTDPARIL---ADL 240 Query: 246 KQVNHLLRQANLPGQ-----FPLLVGYYHRELKNLILVSA 280 Q L + + GQ F + L A Sbjct: 241 HQAFRRLLRQDQGGQASDDGFDAAICVVDPGRCELAFAGA 280 >UniRef50_C7QU83 Sensor protein n=3 Tax=cellular organisms RepID=C7QU83_CYAP0 Length = 1514 Score = 157 bits (398), Expect = 4e-37, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 70/161 (43%), Gaps = 5/161 (3%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 PL G +IL+ +D R + ADGV ALE + PDL++ DI MPR Sbjct: 644 PLRGARILLADDNADMRDYVKRLLQDH-YLVETVADGVAALESIQQQRPDLLLTDIMMPR 702 Query: 64 MNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVF 121 +NGL LL+ +R+ P++++SA + L+ +D L+KP L V Sbjct: 703 LNGLALLQQLRSSLSTQDLPIILLSARAGEESRIEGLQAKADDYLIKPFSS-RELLARVE 761 Query: 122 ACLYPSMFNSRVEEEERLFR-DWDAMVDNPAAAAKLLQELQ 161 ACL + E+ R + AA + L + Sbjct: 762 ACLKMAQIRQEAAAREQTLRLATEKAQQAVAATTEKLNRIL 802 >UniRef50_D0E8E5 Putative adenylate/guanylate cyclase n=1 Tax=Lyngbya majuscula 19L RepID=D0E8E5_9CYAN Length = 1156 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 41/126 (32%), Positives = 69/126 (54%), Gaps = 4/126 (3%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG-FTPDLMICDIAMPRMNGL 67 +ILIV+DE V R ++ ++ S A +G++ALE+L F PDL++ D+ MPRM G Sbjct: 746 KILIVDDEPVNRQVISNYLSMENYAIATATNGLEALEMLSTGFQPDLILLDVMMPRMTGY 805 Query: 68 KLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 ++ IR + + PV++++A ++D+ + GV D L KP + L + + L Sbjct: 806 EVCAKIRQKFLPSELPVIMLTANNQISDLVEGFTFGVNDYLTKPCSK-HELLARIKSHLR 864 Query: 126 PSMFNS 131 S S Sbjct: 865 LSKITS 870 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 157 bits (398), Expect = 5e-37, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 93/209 (44%), Gaps = 17/209 (8%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + +IL+V+DE++ + T A G +AL+ + D++I D+ MP+M+ Sbjct: 1 MSARILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETAYDILILDVMMPKMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL++L+H++ R + V++++ + KA++LG D L KP D + L+ +V L Sbjct: 61 GLEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPF-DPDELKLVVNRALE 119 Query: 126 PSMFNSRVE----EEERLFRDWDAMVDNP--AAAAKLLQELQPPVQQVISH--------- 170 E +R + + +P A L+ + P V+ Sbjct: 120 RRQLMQENRKLKTEVSSKYRFENIIGSSPPMQAVFGLIAKCAPTNSTVLITGESGTGKEM 179 Query: 171 -CRVNYRQLVAADKPGLVLDIAALSENDL 198 R + + D+P + +D LSEN L Sbjct: 180 IARAIHYNSLRKDQPFVTVDCNTLSENLL 208 >UniRef50_C0QLH4 Two-component response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QLH4_DESAH Length = 244 Score = 157 bits (397), Expect = 5e-37, Method: Composition-based stats. Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 1/129 (0%) Query: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 + K+IL++EDEQ + + G +A DGV LEL + PDL+I DI +P Sbjct: 2 EDAEKKRILVIEDEQHIAEGIKLNLNMQGYGVRIAPDGVAGLELWRQWHPDLIILDIMLP 61 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 ++GL +L+ IR+ ++ PVL++SA N D + LR GV+D L KP DL+ V Sbjct: 62 MIDGLTVLKKIRSEDEKLPVLILSAKGNAEDRVRGLRCGVDDYLAKPF-DLDEFLLRVDR 120 Query: 123 CLYPSMFNS 131 L + + Sbjct: 121 LLARKSWYA 129 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 65/130 (50%), Gaps = 2/130 (1%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + ++ILIV+DE +++ S+ G + A +G +AL PDL++ D MP M+ Sbjct: 1 MARKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMS 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G+++L IR + Q P+++++A D GV+D ++KP L L + L Sbjct: 61 GIEVLREIRKKS-QIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFS-LRELSARIKTILK 118 Query: 126 PSMFNSRVEE 135 + EE Sbjct: 119 RLEAKTINEE 128 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 69/124 (55%), Gaps = 1/124 (0%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +++LIV+DE R +L + G AADG++ALE L D+++ D+ MP+++GL Sbjct: 2 EKVLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKEQIDVVVTDLKMPKLSGL 61 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 LLEH+ + +TPV++I+A + AL+ G D + KP D + L ++ + Sbjct: 62 GLLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPF-DRDELISVIEKAIRTR 120 Query: 128 MFNS 131 + N Sbjct: 121 IKNH 124 >UniRef50_D1B9J7 Two component transcriptional regulator, winged helix family n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9J7_THEAS Length = 226 Score = 157 bits (397), Expect = 6e-37, Method: Composition-based stats. Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 10/175 (5%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 ++LI+ED + LL F LG A DG + L+L+ D +I DI +P M+G Sbjct: 1 MRLLIIEDNEDLCQLLREGFEELGHEVDTAGDGRNGLDLIRSGKYDCVILDIMLPEMDGF 60 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 ++++ +R+ G PV++++A +++ D L G +D L KP D L V A + S Sbjct: 61 EVMDQVRDEGHDVPVIMLTAKDSVEDRVHGLEQGADDYLTKPF-DFKELMARVNALMRRS 119 Query: 128 MFNSR---------VEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRV 173 R ++ R R D V +L+ L QV S ++ Sbjct: 120 GDQRRSILKCGPLTLDPVARECRVGDIKVPLRRREFDILELLMRYENQVFSRDKI 174 >UniRef50_C6BRJ1 Sensor protein n=4 Tax=Desulfovibrionales RepID=C6BRJ1_DESAD Length = 656 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 79/162 (48%), Gaps = 6/162 (3%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + +I++V+DE+ R L G T A +GV+AL+LL F PD+++ DI MPRM Sbjct: 8 MSDNKIMLVDDEEGLRRFLGLTLMDFGYTVETAENGVEALKLLENFHPDIIVTDIKMPRM 67 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD------LNRLRE 118 +G+ LL+ I+ V++++ ++ ++L+ D + KPV D L R+ E Sbjct: 68 DGIDLLKAIKEDHPHIEVIMLTGHGDLDLAIESLKNDAADFITKPVDDDVLELSLERVME 127 Query: 119 MVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQEL 160 + + +E+ ++ AA ++++ + Sbjct: 128 KIHLKRQVKEYTENLEKMVEEKTSRIVELERQNAACQVVEGI 169 >UniRef50_Q21G04 Response regulator receiver n=2 Tax=Alteromonadales RepID=Q21G04_SACD2 Length = 563 Score = 156 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 57/306 (18%), Positives = 112/306 (36%), Gaps = 18/306 (5%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALEL-LGGFTPDLMICDIAMPRMNG 66 +IL+V+D R LL G + A G A+++ L DL++ D+ MP MNG Sbjct: 1 MKILVVDDHAYNRDLLQFILEDEGHSCCEADSGEAAVKMFLENEDIDLILMDVNMPLMNG 60 Query: 67 LKLLEHIRN-RGDQ-TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 ++ E I +G + ++ ++A ++ + + L G +D + KPV + + ++ Sbjct: 61 IEATEKISEIKGPRAVTIIFVTALDDSDILIQCLNAGGDDFVPKPVNESILISKINAHAR 120 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 + ++ L + + + + I V + Sbjct: 121 NIENYKQLLDAHNTLDMHNKNIRREHEIVENVFRNSL--TRSNIECDNVVSYSSPMSMFN 178 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 G + A F D T G + + +L + +F + + AL Sbjct: 179 GDLTLTAPSPSGGQYFLLGDFTGHGLSAAIGSLPVMNVF--------FDNAAKQVSVSAL 230 Query: 245 LKQVNHLLRQANLPGQFP-LLVGYYHRELKNLILVSAGLNATL----NTGEHQVQISNGV 299 ++N+ L + G F +G+ + L + S G+N L + + Sbjct: 231 AVEINNQLYRILPMGMFFCAAIGHLDKTGTQLTVWSGGMNDALLLSSDNKSITAIPGAHM 290 Query: 300 PLGTLG 305 PLG L Sbjct: 291 PLGILR 296 >UniRef50_Q2W1D4 Serine phosphatase RsbU, regulator of sigma subunit n=2 Tax=Magnetospirillum RepID=Q2W1D4_MAGSA Length = 421 Score = 156 bits (396), Expect = 9e-37, Method: Composition-based stats. Identities = 60/309 (19%), Positives = 121/309 (39%), Gaps = 23/309 (7%) Query: 9 QILIVEDEQVFRSLLDSWFSSLG---ATTVLAADGVDALELLGG-FTPDLMICDIAMPRM 64 +L+VEDE L++ A+ + G T D+++ D+++P Sbjct: 33 HVLLVEDEPGDARLVEYALRMSSAPVFVVRHVTTLAAAIAHINGGETVDVVLLDLSLPDS 92 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL--REMVFA 122 G+ + ++ +TP+++++ ++ + AL G +D L+K D R R + +A Sbjct: 93 TGIATVSRMQEAASRTPIVIMTGMDDPRFASYALEAGAQDYLIK-SDDPERTVGRAIRYA 151 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVIS-----HCRVNYRQ 177 + R ER+ +V+ AA + +L P +++ V Sbjct: 152 ITRMAGQLERQALLERIAEQQRHLVEEVNAARAMQFDLLPRPERLDERLAKLGIEVESFF 211 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 ++ G + ++FYC D T G + A L + L+ + Sbjct: 212 EPSSGIGGDLWGCLDCGGPRMSFYCFDFTGHG----IGAALNVFRLHALISDHW----DP 263 Query: 238 LPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL--NTGEHQVQ 294 + G +L ++ L+ GQF + + E + SAG A + E++ Sbjct: 264 RRQPGEMLTTLSGALKSLLGRGQFATMFLCTIDVEAGEIEWASAGAPAPVIMQGEEYRFL 323 Query: 295 ISNGVPLGT 303 ++G+PLG Sbjct: 324 DASGIPLGL 332 >UniRef50_Q30VN8 Putative PAS/PAC sensor protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q30VN8_DESDG Length = 489 Score = 156 bits (395), Expect = 9e-37, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 68/139 (48%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 T P +L VED+ V R + +W G T + A DG L++ TPDL++ D+ + Sbjct: 3 TAPAQQATVLTVEDDPVIRETIAAWLEDSGLTVLQAEDGSKGLDVFRRHTPDLVLLDLGI 62 Query: 62 PRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVF 121 P M+G LL+ + TPV+++S T + A + G D + KPV ++ L + V Sbjct: 63 PGMSGESLLKLMVQEQPDTPVIIVSGTAEIDAAISAFKNGAWDFITKPVPNMELLEKTVR 122 Query: 122 ACLYPSMFNSRVEEEERLF 140 CL R++ E + Sbjct: 123 NCLERKSLRERLDAAETRY 141 >UniRef50_B4VMU4 Sensor protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMU4_9CYAN Length = 483 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 82/184 (44%), Gaps = 9/184 (4%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILI++D +L +S G +A DG ALE + P L++ D+ MP ++G + Sbjct: 28 ILIIDDSPNNLEILSETLTSAGFEIAVALDGETALEQIAYDPPTLVLLDVMMPGIDGFET 87 Query: 70 LEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 +++ D + P++ ++A + D K L LG D + KP + L + + Sbjct: 88 CRRLKSNPDTHEIPIIFMTALTDTIDKVKGLNLGAVDYITKPFQQEEVLARVKVHLKLRT 147 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPV-------QQVISHCRVNYRQLVA 180 + + E+ RL + + AA L QEL+ V Q +++ + LV Sbjct: 148 LTKTLEEQNTRLVEEVEQRGKAEAALQTLTQELEQRVEERTNQLAQALNNWQQAQAMLVQ 207 Query: 181 ADKP 184 ++K Sbjct: 208 SEKM 211 >UniRef50_D1B7S7 Two component transcriptional regulator, winged helix family n=2 Tax=Synergistaceae RepID=D1B7S7_THEAS Length = 228 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 41/121 (33%), Positives = 64/121 (52%), Gaps = 3/121 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+VEDE+ R +L F G T + AADG A++L PDL+I D+ +P+M+G + Sbjct: 4 RILVVEDEEGIREILSEAFRRQGYTVMCAADGDQAVDLALTAVPDLIILDLMLPKMDGWE 63 Query: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + IR + PV++++A + D L G +D + KP + L V A L Sbjct: 64 VCRRIREEQELRHVPVIMLTARRDERDAVAGLEAGADDYVRKPFS-IPELMARVRAHLRR 122 Query: 127 S 127 S Sbjct: 123 S 123 >UniRef50_B8FCK6 Response regulator receiver modulated diguanylate cyclase n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FCK6_DESAA Length = 301 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 32/136 (23%), Positives = 64/136 (47%), Gaps = 3/136 (2%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+++D ++ + + ++ G +A +G + LE + PDL++ D+ MP M+G + Sbjct: 4 ILVIDDSRLIAHVAKNMLTARGHEVTVATNGEEGLEAVATIKPDLILLDLIMPGMDGYAV 63 Query: 70 LEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 E I+ PV+++++ AD + L G D + KP ++ L V L Sbjct: 64 CEKIKGSPATADIPVIMLTSKAETADKVRGLEAGASDYVTKPFEE-GELVARVNTHLRIK 122 Query: 128 MFNSRVEEEERLFRDW 143 ++E R ++ Sbjct: 123 ELYESLQETNRQLQEL 138 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 60/124 (48%), Gaps = 2/124 (1%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 P +IL+V+DE R LL S T A++G +AL+L+ L++ D+ MP Sbjct: 2 PEQSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPE 61 Query: 64 MNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 M+GL IR P+++++A + D L++G +D + KP L + A Sbjct: 62 MDGLTACMRIRE-FSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSP-RELLARIEAT 119 Query: 124 LYPS 127 L S Sbjct: 120 LRRS 123 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 65/261 (24%), Positives = 112/261 (42%), Gaps = 24/261 (9%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+DE LL S S G A +G+ AL++L DL+I D MP M+G +L Sbjct: 5 LLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQEDIDLVISDWRMPGMDGPQL 64 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY---P 126 L I+ R Q PV+V++A + + +++R G D + KP D++ L V L Sbjct: 65 LGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPF-DIDELDITVSKALQFRDI 123 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 N R+ E + D++V + A ++LQ + R + ++ + G Sbjct: 124 LKDNQRMRAELAEHQQIDSLVGDSPAFRRVLQ--------AVDSVRESNATILLTGESG- 174 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQ-EQLAHQNQRLPELGALL 245 + ++ + + A+ A+ GLL+ E H+ GA+ Sbjct: 175 -------TGKEMVARAIHKHGNRADKPFVAVNCAAIPEGLLESEMFGHRKGAF--TGAVA 225 Query: 246 KQVNHLLRQANLPGQFPLLVG 266 +V +QA+ F VG Sbjct: 226 DRVGR-FQQADKGTLFLDEVG 245 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 156 bits (395), Expect = 1e-36, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 13/228 (5%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+ +DE+ R +L G T LA DG AL L+ + DL I DI MP M+GL Sbjct: 5 RILVADDEESMRWVLSKALKRKGFTVDLADDGRQALALIQENSYDLAILDIKMPGMSGLD 64 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 LL+ IR V++++A +M + +A++ G D + KP DL+ + +V Sbjct: 65 LLDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPF-DLDVIDAIVEKVGRARE 123 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVL 188 +V ++ ++ + N + +Q + + +V +D L+ Sbjct: 124 IAGQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKVAD-----------SDITILIQ 172 Query: 189 DIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQ 236 + + +A + A+ A+ LL+ +L + Sbjct: 173 GESGTGKEMVA-RAIHFNSGRLGKPFVAINCAAIPRDLLESELFGSER 219 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 14/223 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++LIV+D+ R +L+ G + A G + L L P L++ D+ MP M G + Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKMPGMGGFQ 69 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 LL ++ R T V+VI+A + +A++ G D + KP RE + + ++ Sbjct: 70 LLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFN-----REALKLTVRKAL 124 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVL 188 + E R R+ + + + + + PP+++V RV R + D L+ Sbjct: 125 DMQGLSRENRRLREELSEREEFRS----IIGISPPMEEVF---RVIDR-VADTDATVLIT 176 Query: 189 DIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL 231 + + +A + + A+ A+ LL+ +L Sbjct: 177 GESGTGKELVA-RAIHNRSSRRAAPFVAINCAAIPRDLLESEL 218 >UniRef50_C8QXF1 Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXF1_9DELT Length = 530 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 57/231 (24%), Positives = 96/231 (41%), Gaps = 22/231 (9%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+V+D R +L LG + A +G AL +L DL++ DI MP ++G ++ Sbjct: 171 ILVVDDITANREVLSRRLRRLGYLVMEAENGRQALAMLETGAFDLVLLDILMPELDGYEV 230 Query: 70 LEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 L I+ PVL+ISA ++ + + L G +D L KP + LR V A L Sbjct: 231 LRRIKANELIRHVPVLMISAVGDINSVVRCLEAGADDYLAKPFNSV-LLRARVNASLVKK 289 Query: 128 M-------FNSRVEEEERLF----RDWDAMVDNPAAAA-----KLLQELQPPVQQVISHC 171 + +E+ +L R + AA KL + P + + Sbjct: 290 RLYDQELHYKQEIEQHNQLLEQRVRQQVQEISRAQLAAIFSLSKLAESRDPETGEHLERF 349 Query: 172 RVNYRQLVAADKPGLVLDIAALSENDL-AFYCL-DVTRAGHNGVLAALLLR 220 R Y +++A + + E+ + Y + G G+ A+LL+ Sbjct: 350 R-EYSRVLARHLQTMPRFCKLIDESFIDNLYAACPLHDIGKVGIPDAILLK 399 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 86/192 (44%), Gaps = 7/192 (3%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K+ILIV+DE+ R++L + G A DG L+L DL+I D+ +P+ +G Sbjct: 7 KRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGW 66 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 +L I+ + +TPV++++A ++ D +G +D + KP + L V + L + Sbjct: 67 SILREIK-KYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNN-KVLLARVKSLLRKT 124 Query: 128 --MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 M S +E + + D V N +L + + +I + ++ L Sbjct: 125 NNMVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIA---LSREKLLN 181 Query: 186 LVLDIAALSEND 197 V L ++ Sbjct: 182 EVWGYDFLGDDR 193 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 41/125 (32%), Positives = 66/125 (52%), Gaps = 3/125 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+VED+ V + L+ G T ++A +G ALELL PDL++ D+ +P ++GL Sbjct: 3 KILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDGLD 62 Query: 69 LLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + + IR P++++SA + +AD L LG +D + KP L + A L Sbjct: 63 VCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSP-RELLARIKARLRE 121 Query: 127 SMFNS 131 NS Sbjct: 122 ERRNS 126 >UniRef50_B8FJD3 Sensor protein n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FJD3_DESAA Length = 886 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 63/141 (44%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL ++DE R S+ G V AA+G +EL PDL++ D+ MP M+GL+ Sbjct: 7 KILTIDDEDAIRWSFASFLEDNGYEVVEAANGRLGVELFRREKPDLVLVDLRMPEMDGLE 66 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 +L + P++V+S D AL++G D + KP++ L+ L V L + Sbjct: 67 VLSILSKESPDVPLIVVSGAGVARDAVNALKMGAWDYIFKPIESLSILLHTVRKNLERAQ 126 Query: 129 FNSRVEEEERLFRDWDAMVDN 149 ++ + Sbjct: 127 LRKENKDYQENLEALVQERSE 147 Score = 57.2 bits (137), Expect = 9e-07, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 8/118 (6%) Query: 7 GKQILIVEDEQVFRSL--LDSWFSSLGATTVLAADGVDALELLGG-FTPDLMICDIAMPR 63 G+ IL+ + + R + L +GA ++A + + LE L L+I + A+ Sbjct: 757 GRHILLAD--RDMRHVFTLRKILGDVGAKVIVARNAHEILERLQENENVSLIIAEEALLS 814 Query: 64 MNGLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 + ++ IR G P++V+S ++ + AL G L KPV +LN L Sbjct: 815 SDSYAPIKSIRDEEAGKGIPLVVLSKKQDGPNCQSALEAGANACLAKPV-NLNSLASR 871 >UniRef50_A0YR26 Regulatory components of sensory transduction system n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YR26_9CYAN Length = 469 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 65/152 (42%), Gaps = 3/152 (1%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILIV+D +L + G ++A DG L L PDL++ D+ MP ++G + Sbjct: 9 ILIVDDNPTNIKVLSDFLKDFGFKVLIAKDGESCLHKLEKIKPDLILLDVMMPGVDGFET 68 Query: 70 LEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 I+ PV+ ++A + D K LG D + KP++ + V L Sbjct: 69 CRRIKALDSTKDIPVIFMTALTDPVDKLKGFTLGAVDYITKPLQHEEAI-ARVNVHLKLR 127 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQE 159 ++E++ L + + ++ KL + Sbjct: 128 SLTKQLEQQNHLLEEKNQLLQEEIRYRKLAES 159 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 59/250 (23%), Positives = 104/250 (41%), Gaps = 20/250 (8%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K IL V+DE LL+ G + A DG +ALE++ D ++ D+ MPRM+GL Sbjct: 6 KYILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALEVINAQQVDCVVTDLHMPRMDGL 65 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 +LL+ +R + PV++++A + A++ G D +L+P DL L + L Sbjct: 66 QLLKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPF-DLAELELAIKRALS-- 122 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLV 187 SR+ E R R+ A + +Q L ++QV LV Sbjct: 123 --FSRLVVENRFLREDKADTTGLIGNSPAMQHLAESIRQVAPE-----------KATVLV 169 Query: 188 LDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQ-EQLAHQNQRLPELGALLK 246 + +A + +N + A+ A+ + +L+ E H+ GA+ + Sbjct: 170 AGETGTGKELVA-RAIHAASPRNNALFVAVNCAAIPHEMLESELFGHEKGAF--TGAVKE 226 Query: 247 QVNHLLRQAN 256 ++ Sbjct: 227 RIGKFELADG 236 >UniRef50_Q1Q5K3 Sensor protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q5K3_9BACT Length = 395 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 48/176 (27%), Positives = 90/176 (51%), Gaps = 10/176 (5%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 MT P ++LIVED++ R +L+ ++LG ++ A +G+ AL + PDL++ DI Sbjct: 1 MTNP---ARVLIVEDKKTSRDILNERVNALGHISIPAENGLSALAQIREQPPDLILLDIM 57 Query: 61 MPRMNGLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP M+G ++L H++ PV++ISA ++M I + + G +D L KP + L+ Sbjct: 58 MPEMDGYEVLCHLKDSASWRHIPVIMISAIDDMKSIIRCIEKGADDYLTKPYNPV-LLKA 116 Query: 119 MVFACLYPSMFNSRVEE----EERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISH 170 + +CL + + E+ E+ ++ + + A + L+ +SH Sbjct: 117 RIGSCLMKKRLHDQEEQYRHLLEKKVQEKTSDLQKTNIALEKAYRLKSEFLATMSH 172 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 70/147 (47%), Gaps = 2/147 (1%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + +++LI+ED++ R L + A DG + + ++ P L++ DI +P M Sbjct: 1 MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMK 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G ++ + IR + P++ +S ++ D K L G +D L KP D L + A L Sbjct: 61 GYEICQKIRMLS-EAPIIFLSCKRDIRDKVKGLDAGADDYLTKPF-DFTELEARIKANLR 118 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAA 152 S N+ E +R+F + +D + Sbjct: 119 RSKMNANRNEPKRVFSCGNLEIDLDSY 145 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 155 bits (393), Expect = 2e-36, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 66/122 (54%), Gaps = 2/122 (1%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 ++IL+V+DE R +L++ + +G + A++G +AL + P L++ D+ MP+++ Sbjct: 4 QKEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLD 63 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G + + +R D P+++++A + D L +G +D ++KP L + + L Sbjct: 64 GYGVCQELRKESD-VPIIMLTALGEVCDRITGLEIGADDYVVKPFSP-KELEARIRSVLR 121 Query: 126 PS 127 + Sbjct: 122 RA 123 >UniRef50_B0K8A6 Response regulator receiver modulated diguanylate cyclase n=12 Tax=Clostridia RepID=B0K8A6_THEP3 Length = 318 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 76/147 (51%), Gaps = 4/147 (2%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + G+ ILIV+D ++ R +L + G + A DG +AL++ PD++I DI MP M Sbjct: 9 VKGRNILIVDDNKLTRKILKDILENAGYGVLEAKDGEEALQIYRNKLPDMVILDIVMPGM 68 Query: 65 NGLKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 NG LL +R + P++++++ +N + K L LG +D L+KP D L ++ Sbjct: 69 NGFDLLRILRKEEENLMLPIILLTSQDNFEEKIKGLELGADDYLVKPFNDKELLFKV--N 126 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDN 149 L+ + ++R+ R + + Sbjct: 127 NLFQRIEHNRMANPLTGLRGNIDIKEE 153 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 67/123 (54%), Gaps = 1/123 (0%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 +V K++L+V+DE+ R L + AA+G+ + L F PD++I DI MP Sbjct: 1 MVKKRVLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQDKLMQFKPDVLITDIRMPEK 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +G LLE I++ G PV++++A KA++LG D ++KP DL+ +++ + Sbjct: 61 DGFGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPF-DLDEFLDLIQRAV 119 Query: 125 YPS 127 S Sbjct: 120 AQS 122 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 20/239 (8%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILIV+DE++ L S G AA G +A+ L F PD+ + DI +P +GL Sbjct: 5 RILIVDDEKLISWSLSVMLSKAGYAVETAASGSEAINKLSLFKPDMALLDIRLPDADGLD 64 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 LL+ + R ++ V++I+A ++ +AL+LG ED + KP ++ LR ++ Sbjct: 65 LLQQFKLRDEELSVIMITANADVDSAVRALKLGAEDYIGKPF-NMEALRHVIDKAFEKRQ 123 Query: 129 FNSRV---EEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 ++ +E R + D +V N A+ L + ++ K Sbjct: 124 LREKLDFFRKELRKKTEHDKLVGNSASMVNLFKMIK--------------VCADTDAKTV 169 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQ-EQLAHQNQRLPELGA 243 L+L + + +A + A A + A+ LL+ E H+ + Sbjct: 170 LILGESGTGKELVA-RAIHNHSARAEAPFAEVNCAAIPETLLESELFGHEKGAYTDASK 227 >UniRef50_Q3A190 Two component signal transduction response regulator n=4 Tax=Bacteria RepID=Q3A190_PELCD Length = 238 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 1/127 (0%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + +IL+ ED+ R L G + A DG +AL + + DL + DI MP Sbjct: 1 MDASRILVAEDDPHIREGLVDILEGEGYGVLAAQDGNEALRISEESSFDLALLDIMMPGC 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 NG + +R R +++++A D L LG +D + KP ++ LR + A L Sbjct: 61 NGYDVCRELRRRDPALAIIMLTAKGEEIDKVIGLELGADDYITKPFG-VHELRARIAAVL 119 Query: 125 YPSMFNS 131 S + Sbjct: 120 RRSRRTA 126 >UniRef50_B2JAB7 Response regulator receiver modulated PAS/PAC sensor protein n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2JAB7_NOSP7 Length = 294 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 7/182 (3%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+V+D LL + + LG +G AL+ PDL++ DI MP MNG ++ Sbjct: 37 ILVVDDTPDNLRLLSAMLTQLGYEIRRVINGPTALKTAQAAPPDLILLDIMMPEMNGYEV 96 Query: 70 LEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 +H++ PV+ ISA + + D KA +G D + KP + + V L Sbjct: 97 CQHLKASEITRDIPVIFISALDEVFDKVKAFAVGGVDYITKPFSE-EEVFARVENNLTIR 155 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVI----SHCRVNYRQLVAADK 183 ++ E+ L + + +A +L Q + I S+ ++ Y A Sbjct: 156 RLQKQLTEQNVLLQQEISDRQKAESALRLSQFYLDKFRDSIFFINSNAQLVYVNEAACQI 215 Query: 184 PG 185 G Sbjct: 216 LG 217 >UniRef50_B8DR11 Sensor protein n=5 Tax=Desulfovibrio RepID=B8DR11_DESVM Length = 685 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 6/183 (3%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +G IL+V+DE+ R++L + G AA G +AL PD+++ DI MP ++ Sbjct: 1 MGASILLVDDEEGIRTVLGISLADAGYDVTTAASGEEALARFAAHRPDIVLTDIKMPGLS 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL LLE ++ + V++++ +M ++L+ D L KPV D +M+ L Sbjct: 61 GLDLLERLKAADPEVEVIMLTGHGDMDLAIQSLKRDATDFLTKPVND-----DMLEVALR 115 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA-DKP 184 + + + R + + + +A + E Q QV+ R L +A D Sbjct: 116 RAEERISMRQRLRGYTENLEQMVRDQSARLVEAERQLAALQVMDGIASGIRSLCSALDDG 175 Query: 185 GLV 187 GL Sbjct: 176 GLF 178 >UniRef50_A0YM63 Hybrid signal transduction histidine kinase and diguanylatecyclase/phosphodiesterase n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YM63_9CYAN Length = 582 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 76/188 (40%), Gaps = 7/188 (3%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL++ED++ + + ++A DG LE +PDL++CDI MP+M+G + Sbjct: 3 KILVIEDDKQVQENIQVILELEDFDVIVARDGQSGLEKAIASSPDLILCDIMMPQMDGFE 62 Query: 69 LLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +L ++ P + ++A + D+ + + LG +D L KP L+ + Sbjct: 63 VLSALQSIEATSNIPFIFLTAKSDRDDLRQGMELGADDYLTKPFTPKELLKAIQIRLDKK 122 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQE--LQPPVQQVISHCRV---NYRQLVAA 181 + + + + + + +L L+ Q ++ + N + L Sbjct: 123 EKYQQKYTQTIQEISEQVEHQLHYDQVTELPNRLSLREQFNQRLAQSQFIASNTQMLPIF 182 Query: 182 DKPGLVLD 189 + Sbjct: 183 CLSLDRFN 190 >UniRef50_C9Z8Q7 Putative two-component response regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9Z8Q7_STRSW Length = 251 Score = 155 bits (392), Expect = 2e-36, Method: Composition-based stats. Identities = 39/131 (29%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+V+DE+ RS+L LG AA G AL+ + PDL++ D+ +P + G + Sbjct: 28 RLLVVDDEEGIRSMLTMALEFLGYQVTAAATGRQALQAVTRHDPDLILLDVNLPDLGGFE 87 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 + +R+RG+ PVL ++ + D + L +G +D + KP + L + V A L S Sbjct: 88 VCRTLRDRGNAVPVLFLTGLGGVDDRVRGLDMGGDDFVTKPFE-LKEVAARVRALLRRSG 146 Query: 129 FNSRVEEEERL 139 + RL Sbjct: 147 GGRPAPDRNRL 157 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 2/123 (1%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+DE R LL + A +G +A+ DL++ D+ MP +G++ Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 + IR + TP+++++A A+ + G +D ++KP + V A L + Sbjct: 68 VCRQIREK-KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVL-RVKALLRRAS 125 Query: 129 FNS 131 S Sbjct: 126 QTS 128 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 35/156 (22%), Positives = 75/156 (48%), Gaps = 3/156 (1%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + K+IL+VED++ ++ + G DG+ A E DL++ D+ +P + Sbjct: 1 MKDKKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGL 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +G ++ + IR TP+++++A ++ + K L +G +D + KP + ++ L + A L Sbjct: 61 DGYQVCQKIRETSY-TPIIMLTAKGDLEEKVKGLHIGADDYVTKPFE-IHELLARIHAML 118 Query: 125 YPSMFNSRVEEEERLFR-DWDAMVDNPAAAAKLLQE 159 + + R ++D ++ + A L E Sbjct: 119 RRIEQDHEEVNRKEGNRLEYDNLIFDIDAFIIYLNE 154 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 2/122 (1%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + ILI +D+Q R LL + S G A DG +AL + DL++ DI MPR++ Sbjct: 7 SSRCILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRID 66 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G ++L +R PV+++SA D L LG +D L KP L L V +CL Sbjct: 67 GYQVLRRVRETS-ALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEAL-ARVRSCLR 124 Query: 126 PS 127 + Sbjct: 125 RA 126 >UniRef50_C8X3Y5 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X3Y5_DESRD Length = 236 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 40/140 (28%), Positives = 64/140 (45%), Gaps = 1/140 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+VEDE+ L G A DG +AL L DL+I D+ +P ++G + Sbjct: 8 RILLVEDEESLAVGLQFNLQQEGYVVERAVDGREALTLFAAQEFDLIILDLMLPYVDGYE 67 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 + +R Q P+L+++A D + L G +D L KP L L V L Sbjct: 68 VAREVRAVSPQLPILMLTARTTAKDRIQGLEAGADDYLTKPFH-LKELLLRVQGMLKRKQ 126 Query: 129 FNSRVEEEERLFRDWDAMVD 148 + V ++E + R + V+ Sbjct: 127 WYQDVTQQEPVVRFGENTVN 146 >UniRef50_B8DJD4 Response regulator receiver modulated metal dependent phosphohydrolase n=4 Tax=Desulfovibrio vulgaris RepID=B8DJD4_DESVM Length = 363 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 46/165 (27%), Positives = 70/165 (42%), Gaps = 1/165 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 IL+++D+ R L + S G + A DG L+ PDL++ D+ MP ++GL Sbjct: 6 TILVIDDDPQVRGSLADFLSDSGYGVLQAEDGRAGLDAWQAHQPDLVLVDLRMPVLDGLS 65 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 ++ I G TPV+V+S T + D ALR G D L KP++D+ L V CL + Sbjct: 66 VIRAITASGMGTPVVVVSGTGVLRDAVAALREGAWDYLTKPLEDMGALEHTVERCLERAR 125 Query: 129 FNSRVEEEERLFRDWDAMV-DNPAAAAKLLQELQPPVQQVISHCR 172 + E A A L + +S Sbjct: 126 LLAENEAYRAGLEARIAERTRELRTACDQLSGMMEATVDSLSRVT 170 >UniRef50_Q0AXB8 Sensor protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXB8_SYNWW Length = 763 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 43/123 (34%), Positives = 66/123 (53%), Gaps = 5/123 (4%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+VED +V + +L + S G +AA+GV+ALELL DL+ DI MP M+GL+ Sbjct: 535 ILVVEDNEVNQMVLSNLLRSQGHQVEVAANGVEALELLDKNNYDLVFMDILMPVMDGLET 594 Query: 70 LEHIRNR----GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 IR + G P++ I+A D K L G++D L KPV+ + L + + + Sbjct: 595 TRRIREQEEITGFHIPIIAITAHAIHGDREKFLAAGMDDYLAKPVQ-MEELNQAISKIIK 653 Query: 126 PSM 128 + Sbjct: 654 KAR 656 >UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZKW7_BREBN Length = 459 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 54/236 (22%), Positives = 109/236 (46%), Gaps = 14/236 (5%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILIV+DE FR LL S G TT+ A+DG+ A +L+ T +++ D+ MP M+GL Sbjct: 6 RILIVDDEADFRHLLTSRLKRKGYTTLEASDGISAQKLVTSETIHVILLDLKMPGMDGLS 65 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 L+ + ++V++ + +A++ G D L KP +LN L ++ + Sbjct: 66 FLQWCKETSPAIQIIVVTGHGTIETAIEAMKRGAYDYLTKPY-NLNELEVLISKAVEK-- 122 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVL 188 ++ EE + R+ A+ N +++ E P +++V++ +++ + D L+ Sbjct: 123 --QQLTEENQQLRE--ALSTNGKTTFQIVAE-SPKLKEVLATA----KRVASTDFLVLLK 173 Query: 189 DIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQ-EQLAHQNQRLPELGA 243 + ++ +A + + + L A+ +L+ E H+ A Sbjct: 174 GESGTGKDVIA-RLIYEYSERASKAFVPINLGAIPETMLESELFGHEKGAFTGATA 228 >UniRef50_B1JFX2 Two component transcriptional regulator, winged helix family n=30 Tax=Bacteria RepID=B1JFX2_YERPY Length = 235 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 3/128 (2%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +ILI ED R+ L + G + A +GV AL L PD +I DI MP ++G Sbjct: 1 MKILIAEDNAHIRNGLMEVLAHEGYRPIAAENGVQALALYRQQQPDFIILDIMMPELDGY 60 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPV---KDLNRLREMVFACL 124 K+ IR QTP++ +SA + D L LG +D + KP + R++ +V CL Sbjct: 61 KVCREIRKHDWQTPIIFLSAKDEEIDRVIGLELGADDYISKPFGIHEMRARIKTIVRRCL 120 Query: 125 YPSMFNSR 132 ++ Sbjct: 121 RKVPESAE 128 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 155 bits (391), Expect = 3e-36, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 71/132 (53%), Gaps = 2/132 (1%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + K +LIV+DE+ R L+ + + + + A +G +AL++L D+++ D+ MP+M Sbjct: 1 MEKKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKM 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +G L IR + D P+L ++A + D K L+LG +D ++KP L + A + Sbjct: 61 DGFTLCARIREQSD-VPILFLTARGDEWDKVKGLKLGGDDYIVKPFSP-GELIARIEAIM 118 Query: 125 YPSMFNSRVEEE 136 + N + E+ Sbjct: 119 RRAYHNKQKNED 130 >UniRef50_A0YP69 Hybrid signal transduction histidine kinase and diguanylatecyclase/phosphodiesterase n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YP69_9CYAN Length = 564 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 74/177 (41%), Gaps = 13/177 (7%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++LI+EDE R + AA+G+ LE PDL++CD+ MP+M+G + Sbjct: 3 KVLIIEDEDSIRENIAELLEIEDFEVETAANGIQGLETAKKTIPDLILCDVMMPKMDGYQ 62 Query: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +L +R + TP + ++A D+ + + LG +D L KP L +V Sbjct: 63 VLTELRKHSETANTPFIFLTAKAERMDLRQGMNLGADDYLTKPCSSQELLEAIVARLQRN 122 Query: 127 SMFNSRVEEEERL-----------FRDWDAMVDNPAAAAKLLQELQPPVQQVISHCR 172 + ++++ ER + + + A + L P + + + Sbjct: 123 AQQQEQLKQLERYDQLTGLPNLQALSETNGYLQQAIAKRDKQKNLVPFLLLGLDRFQ 179 >UniRef50_Q7M9T6 TWO-COMPONENT RESPONSE REGULATOR n=1 Tax=Wolinella succinogenes RepID=Q7M9T6_WOLSU Length = 330 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 68/328 (20%), Positives = 119/328 (36%), Gaps = 35/328 (10%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 +T PL +L+VEDE++ + +L + +A++G +ALEL TPD+++ D+ Sbjct: 5 LTFPLS---LLLVEDEKMSQEMLARLLEPRVSRLWIASNGKEALELYQENTPDVVLTDLV 61 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP M+G++L+E I+ + V++ +A + + +A+ LGV L KP+ L E + Sbjct: 62 MPEMDGMELIERIKGLNPEATVVISTAFYELGFLMRAIELGVFGYLTKPLS-FQGLEETL 120 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQEL--------QPPVQQVI---- 168 C EE E D A + +EL Q ++ Sbjct: 121 RKCHRRVELLRAHEELEVKNHHLKIAYDQLREAKEQEKELFIYKERYHQSHQEEAFKKQI 180 Query: 169 ------------SHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAA 216 S N G L E FY +D G + LA+ Sbjct: 181 KLMRSDLSNSYESGIFFNLFYEPLDILSGDAYGSVRLGEGRCLFYAIDAMGKGLSASLAS 240 Query: 217 LLLRALFN-GLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNL 275 + + N L + + + A L + L L + + + Sbjct: 241 IQSVSFLNYQLRPSKALDEFDFEAYIQAFLSFIRTQLLNNEL---LSASFILMEEKGEKI 297 Query: 276 ILVSAGLNATL---NTGEHQVQISNGVP 300 G+ G+ + +SN P Sbjct: 298 RYALFGMPPLWVMDERGKVRELVSNNPP 325 >UniRef50_B0AAH6 Putative uncharacterized protein n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0AAH6_9CLOT Length = 224 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 1/118 (0%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL++ED + R L+ + G +T A DG L++L DL+ICDI MP M+G + Sbjct: 4 ILVIEDNKNMRKLICATLKQNGYSTFEAEDGEVGLDVLDTTHIDLIICDIMMPNMDGYEF 63 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 E +R+ +TP+++++A E + D K +G +D ++KP+ D L + A L S Sbjct: 64 TETLRDGHCETPIIIVTAKEQLEDKKKGFSIGADDYMVKPI-DFEELILRIGAILRRS 120 >UniRef50_C1TKX4 Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TKX4_9BACT Length = 593 Score = 154 bits (390), Expect = 4e-36, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 74/149 (49%), Gaps = 1/149 (0%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 I++V+D R L G V + G DALE L PDLM+ DI MP ++GL + Sbjct: 4 IMVVDDNVSVRESLALCLEDFGHVVVKHSSGEDALEALETDVPDLMLLDIMMPGISGLDV 63 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 LE + R PV+++S ++AD+ KA+RLG D L+KPV D+ LR V L + Sbjct: 64 LERVVPRFPDLPVIMVSGDGDVADVVKAIRLGTWDYLMKPVTDVEMLRHAVDQALAKASL 123 Query: 130 NSRVEE-EERLFRDWDAMVDNPAAAAKLL 157 E RL + ++ D + L Sbjct: 124 KRENREYRLRLEKLVNSQNDELRSITDSL 152 >UniRef50_UPI0001C38DA3 response regulator receiver modulated diguanylate cyclase n=1 Tax=Arthrospira platensis str. Paraca RepID=UPI0001C38DA3 Length = 487 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 3/151 (1%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 IL+V+D LL + G LA G AL L F PDL++ DI MP M+G + Sbjct: 18 TILVVDDVPDNLRLLQNILRKQGYDVRLATSGKLALRSLTRFRPDLILLDIMMPEMDGYQ 77 Query: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + E+I+ + PV+ ++A D KA ++G D L KP + + + L Sbjct: 78 VCEYIKKNPETQDIPVIFLTALNQGIDKLKAFQVGGADYLTKPFQ-IEEALARIQNQLTL 136 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLL 157 ++E + + + + + +LL Sbjct: 137 RSLQKQLEAKNQALIEQNQQLKESERETRLL 167 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 65/121 (53%), Gaps = 2/121 (1%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 V ++IL+ +D+ +L+ ++ G + A+DG +AL+L PDL+I D+ MP+++ Sbjct: 3 VARRILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVD 62 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G + IR P+L+++A + D RLG +D + KP DLN L V A L Sbjct: 63 GFAVCGRIRA-ASAVPILLLTARGDSVDKVVGFRLGADDYVTKPF-DLNELVLRVHAILR 120 Query: 126 P 126 Sbjct: 121 R 121 >UniRef50_D0LRM4 Sensor protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRM4_HALO1 Length = 397 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 71/154 (46%), Gaps = 5/154 (3%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+D ++L G ++A DG +A+EL PD+++ D+ MP ++G + Sbjct: 22 VLLVDDNPANLAVLFEHLDEHGYRVLVAEDGSEAVELASRIQPDIILLDVMMPGIDGFET 81 Query: 70 LEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 +++ P++ ++A + D + R G D + KP + L V + Sbjct: 82 CRQLKSHSTLSDIPIIFMTALTDTRDKVEGFRAGAVDYVTKPFQHREVL-ARVRTHVVLR 140 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQ 161 ++ + +++R+ + + AA A L Q + Sbjct: 141 RLDAELRDQKRVLEA--EVQERLAAEAALKQHVA 172 >UniRef50_C7Q2J4 Two component transcriptional regulator, winged helix family n=5 Tax=Actinomycetales RepID=C7Q2J4_CATAD Length = 254 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 1/126 (0%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +LIV+DE R++L S G A DG AL + PDL++ D+ MP M+GL Sbjct: 16 VLIVDDEPGIRAVLASSLEFEGYAVRTAVDGRAALAEVERGRPDLVLLDVLMPGMDGLTA 75 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 +R PVL+++A + D L G +D L KP + L+ L V A L Sbjct: 76 CRRLRTADPTLPVLMLTARDLTGDRVAGLDAGADDYLAKPFE-LDELLARVRALLRRGAL 134 Query: 130 NSRVEE 135 E Sbjct: 135 TGEGAE 140 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 36/133 (27%), Positives = 68/133 (51%), Gaps = 4/133 (3%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K+IL+VED++ + L + G +A DGV+AL F PDL++ DI +P +G Sbjct: 2 KKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGW 61 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 ++ + IR P+++++A + D L++G +D + KP L + A L Sbjct: 62 EVCKEIRKIS-NVPIIMLTAKDEEVDKVLGLKMGADDYITKPFG-AKELLARIEAVLRR- 118 Query: 128 MFNSRVEEEERLF 140 + S + + +++ Sbjct: 119 -YQSDLSKSQKIV 130 >UniRef50_B4VJC2 Response regulator receiver domain protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VJC2_9CYAN Length = 237 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 5/166 (3%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K+IL+V+D++ R L ++G + G +ALE PDL++ D+ MP M+G+ Sbjct: 2 KKILVVDDDRTLRITLTRALENMGYQVQQVSSGAEALEACVKNPPDLVVSDVMMPEMDGI 61 Query: 68 KLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 + +R G P + +S + D +G +D L+KPV L + A L Sbjct: 62 EFCRRLRATPSGQLMPFIFLSGKGELEDRIHGHSIGADDYLIKPVNP-RELAAKIEAQLE 120 Query: 126 PSMFNSRVEEEERLFRDWDAMVD--NPAAAAKLLQELQPPVQQVIS 169 + + + A+ + N A A+ + P ++ ++ Sbjct: 121 RTRRIHALIVQLMQLNASSAVTELANQAKTAQATEVSAPQEEETVT 166 >UniRef50_Q1DD85 Sigma-54 dependent DNA-binding response regulator FrgC n=3 Tax=Myxococcus xanthus RepID=Q1DD85_MYXXD Length = 466 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 56/250 (22%), Positives = 99/250 (39%), Gaps = 28/250 (11%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M + L G +L+V+D+ +L + + G TT A DG +AL LL D+++ D+ Sbjct: 1 MNESLRG-TVLLVDDDPAVAKVLGALLTQAGLTTHAARDGQEALALLASKPVDVVVSDVR 59 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP M+GL++L + PV++++A + +A++ G D +LKP RE + Sbjct: 60 MPGMDGLQVLAEVARGWPDVPVILLTAHGTVPLAVEAMKAGAADFVLKPFD-----REEI 114 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 + ++ ++ EE + R + A A + L V R Sbjct: 115 LFTVRKALLRAQGEEARQQVRPTGGFIGRSRAMADVQAVLAKAAA---GTATVLLRGESG 171 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL------AHQ 234 K +LA + +G L AL + LL+ +L A Sbjct: 172 TGK-------------ELAAKAVHDASPRRDGPFVKLHCAALPDTLLESELFGYEKGAFT 218 Query: 235 NQRLPELGAL 244 + G + Sbjct: 219 GAATRKPGRV 228 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 1/119 (0%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+VEDE R + G A G DAL LL F PDL++ D+ +P ++GL+ Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 + +HIR +++++A D L LG +D ++KP L + A L Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPF-ELIARIKAMLRRR 124 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 39/183 (21%), Positives = 78/183 (42%), Gaps = 9/183 (4%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+ EDE RS + G + A +G +AL+ T D+++ DI MP ++G Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 + E R++ + +++++A D L +G +D + KP L + + L Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSP-AELLARIQSLLRRVE 121 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQ-----ELQPPVQQVISHCRVNYRQLVAADK 183 R ++ L + A ++ + E+ P ++ H N Q+++ D+ Sbjct: 122 TLRRRKQPRELVSGPFRI---DLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDE 178 Query: 184 PGL 186 Sbjct: 179 LLD 181 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 64/120 (53%), Gaps = 2/120 (1%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++LI +DE+ R LL + T A DG +AL+L T +L+I D+ MP+++G++ Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGIE 64 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 + +RN P+L+++A + D L +G +D + KP +N + + A + + Sbjct: 65 VCRRLRN-NTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFS-VNEVIARIKALMRRFL 122 >UniRef50_Q2JML6 DNA-binding response regulator, LuxR family n=4 Tax=Synechococcus RepID=Q2JML6_SYNJB Length = 229 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 63/135 (46%), Gaps = 5/135 (3%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K++L+V+D+ + +L + G A GV+ L L PD+++ D+ MP M+G Sbjct: 2 KRVLVVDDDPLSLKVLSRHLTQHGYRVCTGASGVEGLRLFAQEQPDVVVSDVVMPEMDGF 61 Query: 68 KLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLN---RLREMVFA 122 + +R + G+ P + +S+ + D + G +D ++KP + L ++ + Sbjct: 62 EFCRQLRQQRGGELVPFIFLSSRGEIDDRVQGYERGADDYIIKPFEPLELVAKIEAQIER 121 Query: 123 CLYPSMFNSRVEEEE 137 R+ +++ Sbjct: 122 SRRTQSEILRLIQQQ 136 >UniRef50_Q1PYM7 Similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYM7_9BACT Length = 469 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 102/222 (45%), Gaps = 11/222 (4%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILIV+DE+ R + + + G + A +ALE + F PDL++ D+ +P +NG++L Sbjct: 7 ILIVDDEETIRLSVREFLDAQGYEAIAAGSCEEALEKMDTFMPDLILLDLRLPNINGVEL 66 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 +E I+ + ++V++ ++ + +RLG D L KP K L+RLR +V L Sbjct: 67 IEKIKEKDPNALMVVMTGYGSVDSAVEVMRLGAYDYLEKPFK-LDRLRSVVEKALRRQGL 125 Query: 130 NSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVLD 189 V E + +D D ++ P ++++ S + + ++ L+ Sbjct: 126 RQEVLEIKEKQWTFDEESDG------IIIGNSPQMKEIYSLIK---QVAKSSSTTVLIQG 176 Query: 190 IAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL 231 + + +A + A +G + AL LL+ +L Sbjct: 177 ESGTGKELVA-RAVHRLSARKSGRFVDINCAALTESLLEAEL 217 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 154 bits (389), Expect = 5e-36, Method: Composition-based stats. Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 5/138 (3%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + ++LIV+DE R L G A G + L+L PDL+ DI +P M+ Sbjct: 1 MNARVLIVDDEDGIRFSLRGILEDEGYEVAEAETGEEGLKLATETPPDLIFLDIWLPGMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL++L+++R PV++IS N+ A++ G D + KP+ L ++V + Sbjct: 61 GLEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLS----LEKVVISA-N 115 Query: 126 PSMFNSRVEEEERLFRDW 143 ++ R+ E + R Sbjct: 116 KALEYYRLRRENQALRSR 133 >UniRef50_B4W013 PAS fold family n=2 Tax=Bacteria RepID=B4W013_9CYAN Length = 974 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 54/198 (27%), Positives = 97/198 (48%), Gaps = 18/198 (9%) Query: 4 PLVGKQ----ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG-FTPDLMICD 58 PL+ K IL+V+DE + ++ + S V A G++AL + F PDL+I D Sbjct: 570 PLMSKTGEFTILVVDDEPINLQVVTNHLSVHNYAIVQATSGIEALAKIEQGFKPDLVILD 629 Query: 59 IAMPRMNGLKLLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL 116 I MP+M+G ++ + IR T P+++++A E ++D+ + L LG D L KP+ + L Sbjct: 630 IMMPKMSGYEVCQKIRQCFPATEMPIILLTAKEQVSDLVEGLSLGANDYLTKPISK-HEL 688 Query: 117 REMVFACLYPSMFNSR----VEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCR 172 + L+ S N V +E F ++++VD +L ++Q + + + R Sbjct: 689 IARIKTHLHLSNINRAYGRFVPQEFLRFLGYESIVD-----VRLGDQVQQDMSIMFADIR 743 Query: 173 VNYRQLVAADKPGLVLDI 190 N+ L + P + Sbjct: 744 -NFTTLSESMSPQDNFNF 760 Score = 127 bits (320), Expect = 5e-28, Method: Composition-based stats. Identities = 46/172 (26%), Positives = 76/172 (44%), Gaps = 11/172 (6%) Query: 6 VGKQILIVEDEQV----FRSLLDSWFSSLGATTVLAADGVDALELLGGFT-PDLMICDIA 60 + +IL+V+DE R + A +GVDALE L D+++ DI Sbjct: 1 MPAKILVVDDEPDLELLIRQKFRKKIRRQELQFIFAHNGVDALETLHAQPDIDMVLTDIN 60 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP M+GL LL H+ T +++SA +M +I KA+ LG D L KP+ D L Sbjct: 61 MPEMDGLTLLTHLAQDYPTTKAVILSAYGDMENIRKAMNLGAFDFLTKPI-DFQDLDITT 119 Query: 121 FACLYPSMFNSRVEEEERLFRD-----WDAMVDNPAAAAKLLQELQPPVQQV 167 L +++E L + + + ++ +EL+ +Q+ Sbjct: 120 HKTLNHVQQLKAAQQQEYLAQQAQADLLENLRQEVIERQRIQEELRASERQL 171 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 2/146 (1%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 IL+ +DE+ RS+L + G V AADG AL++L D+ + DI MP M+G + Sbjct: 4 TILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMDGYQ 63 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS- 127 +L+ +R D PV+V+SA + L LG +D ++KP L + + Sbjct: 64 VLKRLRETSD-VPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRLKG 122 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAA 153 M ++ + ++ R + +D A A Sbjct: 123 MAAAQPKRPAKVLRCRNLELDQEACA 148 >UniRef50_Q311S5 Sensor protein n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q311S5_DESDG Length = 544 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 71/160 (44%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L ++DE R L +F G + A+DG + +E PD+++ D+ MP ++G++ Sbjct: 12 RVLAIDDESSVRQSLAIFFEDCGYEVLEASDGYEGIETALRERPDVILVDLRMPGIDGIE 71 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 +L + + TP + +S + +A+R G D + KPV+D LR+ V + + Sbjct: 72 VLRRLSSELPDTPAIAVSGVGVLEQALEAMRSGAWDFISKPVEDFEVLRKAVESARERAD 131 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVI 168 R + A A AK EL + Sbjct: 132 RKRRKRGYHQHLEREVAARTRELAMAKEEAELASRAKSQF 171 Score = 124 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 9/127 (7%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 ++PL +IL+ ED+ + R L +F +G G++ L+ L DL++ DI M Sbjct: 415 SKPL---RILLAEDDIINRKLAVFFFEKMGHAVRAVGTGIEVLQALAQEPFDLILMDIQM 471 Query: 62 PRMNGLKLLEHIRNRG-----DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL 116 P M+G++ IR+ P++ ++A D + L G++ + KPV D L Sbjct: 472 PDMDGVEATRAIRSAQGGRIRSDIPIIAMTAHAMKGDKERFLTAGMDGYVSKPV-DFPAL 530 Query: 117 REMVFAC 123 + + A Sbjct: 531 MQRIEAL 537 >UniRef50_Q2IQM1 Two component, sigma54 specific, transcriptional regulator, Fis family n=9 Tax=Myxococcales RepID=Q2IQM1_ANADE Length = 485 Score = 153 bits (388), Expect = 6e-36, Method: Composition-based stats. Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 22/219 (10%) Query: 1 MTQPLVG-----KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLM 55 M+ P VG ++IL+V+DEQ R L + S G AADG +AL LL GF P + Sbjct: 1 MSMPSVGARPGKERILVVDDEQNARVALRTILSEEGYEIAEAADGEEALALLPGFAPAAV 60 Query: 56 ICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNR 115 + D+ MPRM+G+ LL R +G ++++A ++ +A+R G E+ L+KP+ D+N Sbjct: 61 LADVRMPRMDGINLLRRAREQGSDAVFVMMTAFASVEAAVEAMRAGAENYLVKPL-DVNA 119 Query: 116 LREMVFACLYPSMFNSRVEEEERLFRDWDAMVD------NPAAAAKLLQELQPPVQQVIS 169 + ++ L R+ + A ++++ P V+ Sbjct: 120 VLVVLEKALEKLRLQRDTANLRERVRERYRFHNIVGDAPELHAVYEVVKRAAPTRATVLI 179 Query: 170 ----------HCRVNYRQLVAADKPGLVLDIAALSENDL 198 + + + ADK + ++ AALSE L Sbjct: 180 LGESGTGKELFAQALHEESPRADKAFIKVNCAALSETLL 218 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q48KH7 Response regulator n=23 Tax=Pseudomonadaceae Rep... 334 2e-90 UniRef50_P0AEV2 Protein hnr n=144 Tax=Enterobacteriaceae RepID=H... 330 5e-89 UniRef50_Q21LQ5 Response regulator receiver n=1 Tax=Saccharophag... 323 5e-87 UniRef50_A4BEJ2 Probable two-component response regulator n=1 Ta... 318 2e-85 UniRef50_Q1N0N5 Response regulator n=1 Tax=Bermanella marisrubri... 315 1e-84 UniRef50_B0TIH1 Response regulator receiver modulated serine pho... 315 2e-84 UniRef50_Q2LXY9 Response regulator receiver domain and a sigma f... 311 2e-83 UniRef50_B8F901 Response regulator receiver modulated serine pho... 310 6e-83 UniRef50_Q8YUQ5 Two-component response regulator n=28 Tax=Cyanob... 306 6e-82 UniRef50_Q1GCJ7 Phosphoserine phosphatase rsbU n=15 Tax=Rhodobac... 305 1e-81 UniRef50_Q1NPP0 Response regulator receiver n=1 Tax=delta proteo... 303 5e-81 UniRef50_B1XIW8 Two-component response regulator (RsbV-like) n=1... 302 1e-80 UniRef50_B5XRS9 Response regulator n=9 Tax=Enterobacteriaceae Re... 301 2e-80 UniRef50_A0YCS2 Probable two-component response regulator n=1 Ta... 299 8e-80 UniRef50_D0ZCI2 Serine phosphatase RsbU, regulator of sigma subu... 297 3e-79 UniRef50_C5BR05 Response regulator receiver domain protein n=1 T... 296 7e-79 UniRef50_B7JXS3 Response regulator receiver modulated serine pho... 293 5e-78 UniRef50_A6GMM8 Response regulator n=1 Tax=Limnobacter sp. MED10... 291 2e-77 UniRef50_UPI0000E87E96 Response regulator receiver (CheY) modula... 290 3e-77 UniRef50_D0ZH67 Response regulator receiver protein n=20 Tax=Ent... 289 7e-77 UniRef50_B6AT92 Response regulator n=1 Tax=Rhodobacterales bacte... 289 8e-77 UniRef50_C0QDZ1 Putative chemotaxis response regulator n=1 Tax=D... 288 2e-76 UniRef50_Q608Q0 Response regulator n=1 Tax=Methylococcus capsula... 287 6e-76 UniRef50_B3PDM6 Response regulator n=1 Tax=Cellvibrio japonicus ... 286 8e-76 UniRef50_B9M3D6 Response regulator receiver modulated serine pho... 285 1e-75 UniRef50_B8G3T7 Response regulator receiver modulated serine pho... 285 2e-75 UniRef50_A8FXH7 Response regulator receiver modulated serine pho... 284 3e-75 UniRef50_A8GZ93 Response regulator receiver modulated serine pho... 283 7e-75 UniRef50_C4XPV8 Response regulator receiver protein n=1 Tax=Desu... 281 2e-74 UniRef50_D0MCI0 Serine phosphatase RsbU regulator of sigma subun... 280 5e-74 UniRef50_Q1IMF3 Response regulator receiver modulated serine pho... 280 6e-74 UniRef50_A3PNQ6 Response regulator receiver protein n=2 Tax=Rhod... 280 7e-74 UniRef50_A1WTI7 Response regulator receiver protein n=1 Tax=Halo... 278 1e-73 UniRef50_C4XP67 Response regulator receiver protein n=1 Tax=Desu... 277 4e-73 UniRef50_B0SE00 Sensor protein n=2 Tax=Leptospira biflexa serova... 275 2e-72 UniRef50_A0Z812 Response regulator n=4 Tax=unclassified Gammapro... 274 4e-72 UniRef50_A3JMA6 Response regulator n=2 Tax=Rhodobacterales RepID... 273 5e-72 UniRef50_Q16D14 Response regulator n=7 Tax=Rhodobacteraceae RepI... 273 7e-72 UniRef50_Q2W8A5 Serine phosphatase RsbU regulator sigma subunit ... 271 2e-71 UniRef50_A4WVX0 Response regulator receiver protein n=5 Tax=Rhod... 270 3e-71 UniRef50_C0QFH6 Putative two-component response regulator receiv... 270 4e-71 UniRef50_A8LPF3 Response regulator n=2 Tax=Rhodobacteraceae RepI... 270 5e-71 UniRef50_D1NYI5 Protein hnr n=5 Tax=Enterobacteriaceae RepID=D1N... 270 6e-71 UniRef50_A0KWS5 Response regulator receiver modulated serine pho... 268 1e-70 UniRef50_B0TN95 Response regulator receiver modulated serine pho... 267 4e-70 UniRef50_C4L3A8 Response regulator receiver modulated serine pho... 265 1e-69 UniRef50_Q1NTC5 Response regulator receiver n=3 Tax=delta proteo... 265 1e-69 UniRef50_B4RXD7 Putative response regulator n=3 Tax=Alteromonas ... 265 2e-69 UniRef50_A5UZS1 Response regulator receiver protein n=3 Tax=Bact... 265 2e-69 UniRef50_Q1N2W0 Response regulator containing a CheY-like receiv... 265 2e-69 UniRef50_A1U0P5 Response regulator receiver protein n=4 Tax=Gamm... 264 3e-69 UniRef50_A1AZB3 Response regulator receiver protein n=1 Tax=Para... 263 5e-69 UniRef50_C0GPF4 Response regulator receiver modulated serine pho... 261 2e-68 UniRef50_A0LDM2 Response regulator receiver protein n=1 Tax=Magn... 261 3e-68 UniRef50_P74139 Regulatory components of sensory transduction sy... 261 3e-68 UniRef50_C7LV69 Response regulator receiver protein n=2 Tax=Desu... 260 4e-68 UniRef50_D2L926 Response regulator receiver modulated serine pho... 260 4e-68 UniRef50_B8CL69 Serine phosphatase RsbU, regulator of sigma subu... 259 8e-68 UniRef50_Q07SD0 Response regulator receiver modulated serine pho... 258 1e-67 UniRef50_A4XW58 Response regulator receiver protein n=3 Tax=Gamm... 258 2e-67 UniRef50_D0MFG2 Response regulator receiver modulated serine pho... 258 2e-67 UniRef50_A0K1U5 Response regulator receiver protein n=3 Tax=Arth... 258 3e-67 UniRef50_A4U5H4 Two-component response regulator n=1 Tax=Magneto... 257 3e-67 UniRef50_A3WN77 Response regulator of sigma subunit, serine phos... 257 5e-67 UniRef50_C4XQQ3 Response regulator receiver protein n=1 Tax=Desu... 257 6e-67 UniRef50_B4D1A0 Response regulator receiver modulated serine pho... 256 1e-66 UniRef50_Q2SBW1 Response regulator containing a CheY-like receiv... 255 1e-66 UniRef50_B1ZXR5 Response regulator receiver modulated serine pho... 255 1e-66 UniRef50_B8GB99 Response regulator receiver modulated diguanylat... 255 2e-66 UniRef50_B5JB24 Stage II sporulation protein E n=3 Tax=Rhodobact... 255 2e-66 UniRef50_Q1N5B1 Putative response regulator n=1 Tax=Bermanella m... 255 2e-66 UniRef50_B9XP30 Response regulator receiver modulated serine pho... 255 2e-66 UniRef50_C5CE55 Response regulator receiver modulated serine pho... 254 3e-66 UniRef50_B3PEZ3 Response regulator n=3 Tax=Gammaproteobacteria R... 254 3e-66 UniRef50_C6C148 Response regulator receiver protein n=1 Tax=Desu... 254 4e-66 UniRef50_Q28WC4 Response regulator receiver (CheY-like) modulate... 253 5e-66 UniRef50_Q01YK8 Response regulator receiver modulated serine pho... 253 6e-66 UniRef50_Q2W3W2 Serine phosphatase RsbU n=2 Tax=Magnetospirillum... 252 1e-65 UniRef50_Q12BT3 Anti-sigma-factor antagonist (STAS) domain prote... 252 1e-65 UniRef50_Q64S15 Sigma factor SigB regulation protein RsbU n=5 Ta... 252 1e-65 UniRef50_C8X119 Response regulator receiver modulated serine pho... 251 3e-65 UniRef50_UPI00016C38B1 response regulator n=1 Tax=Gemmata obscur... 250 4e-65 UniRef50_C1DQE9 Response regulator n=19 Tax=Pseudomonadaceae Rep... 250 4e-65 UniRef50_Q15VH2 Response regulator receiver protein n=1 Tax=Pseu... 250 5e-65 UniRef50_Q0AT15 Response regulator receiver modulated serine pho... 250 5e-65 UniRef50_C6J6U9 Phosphoserine phosphatase n=2 Tax=Bacillales Rep... 249 8e-65 UniRef50_B7GKR0 Response regulator with PP2C-type protein phosph... 249 8e-65 UniRef50_B4EXS4 Response regulator n=3 Tax=Proteus RepID=B4EXS4_... 249 9e-65 UniRef50_A0LBV4 Response regulator receiver protein n=1 Tax=Magn... 249 9e-65 UniRef50_A3DCZ0 Response regulator receiver protein n=3 Tax=Clos... 249 1e-64 UniRef50_C6BU34 Response regulator receiver modulated serine pho... 248 2e-64 UniRef50_B7RZ17 Stage II sporulation protein E n=1 Tax=marine ga... 248 2e-64 UniRef50_A1WZ09 Response regulator receiver protein n=1 Tax=Halo... 248 2e-64 UniRef50_Q3IED7 Putative response regulator n=3 Tax=Alteromonada... 245 2e-63 UniRef50_A4U2R5 Stage II sporulation E n=1 Tax=Magnetospirillum ... 245 2e-63 UniRef50_C0GT23 Response regulator receiver modulated serine pho... 244 3e-63 UniRef50_Q310X6 Response regulator receiver (CheY-like) modulate... 244 4e-63 UniRef50_B1HNT1 Phosphoserine phosphatase rsbP n=74 Tax=Bacillal... 243 5e-63 UniRef50_D1R4M5 Putative uncharacterized protein n=1 Tax=Parachl... 243 6e-63 UniRef50_A0LDH6 Response regulator receiver protein n=1 Tax=Magn... 241 2e-62 UniRef50_B7S1F6 Stage II sporulation protein E n=1 Tax=marine ga... 240 5e-62 UniRef50_A8ZSN7 Response regulator receiver protein n=1 Tax=Desu... 240 7e-62 UniRef50_Q7NSC1 Probable two-component response regulator n=1 Ta... 240 7e-62 UniRef50_C5S8G9 Response regulator receiver protein n=1 Tax=Allo... 240 7e-62 UniRef50_D0RPA8 Regulatory components of sensory transduction sy... 239 9e-62 UniRef50_Q21IP0 Stage II sporulation E n=1 Tax=Saccharophagus de... 239 1e-61 UniRef50_Q2W139 Chemotaxis response regulator protein-glutamate ... 238 2e-61 UniRef50_B5EE19 Response regulator receiver modulated serine pho... 238 2e-61 UniRef50_C6CXV6 Response regulator receiver modulated serine pho... 237 4e-61 UniRef50_Q2SPR3 Serine phosphatase RsbU, regulator of sigma subu... 235 1e-60 UniRef50_C4XN65 Response regulator receiver protein n=2 Tax=Desu... 234 4e-60 UniRef50_Q2BJS2 Sensor histidine kinase/response regulator n=1 T... 233 1e-59 UniRef50_Q7NUQ3 Probable two-component response regulator n=1 Ta... 230 6e-59 UniRef50_A0LAN5 Response regulator receiver protein n=1 Tax=Magn... 229 9e-59 UniRef50_Q04UP8 Serine phosphatase, regulator of sigma subunit n... 228 2e-58 UniRef50_Q21G04 Response regulator receiver n=2 Tax=Alteromonada... 228 2e-58 UniRef50_Q60AL6 Response regulator n=1 Tax=Methylococcus capsula... 227 3e-58 UniRef50_B0SD70 Receiver component of a two component response r... 227 5e-58 UniRef50_A0KNX4 Response regulator receiver domain n=2 Tax=Aerom... 225 1e-57 UniRef50_Q01VL2 Response regulator receiver modulated serine pho... 225 2e-57 UniRef50_Q1ZRM9 Hypothetical response regulator n=5 Tax=Photobac... 223 6e-57 UniRef50_A0YTY5 Sensor protein n=6 Tax=Bacteria RepID=A0YTY5_9CYAN 223 7e-57 UniRef50_C4LC82 Response regulator receiver protein n=1 Tax=Tolu... 222 1e-56 UniRef50_C5V035 Response regulator receiver protein n=1 Tax=Gall... 222 1e-56 UniRef50_Q7MIU6 Response regulator n=56 Tax=Vibrionales RepID=Q7... 222 1e-56 UniRef50_Q0RR80 Putative regulatory protein n=1 Tax=Frankia alni... 222 1e-56 UniRef50_B0SID6 Response regulator n=2 Tax=Leptospira biflexa se... 220 9e-56 UniRef50_A0LC69 Response regulator receiver protein n=1 Tax=Magn... 219 1e-55 UniRef50_UPI0001699C5B response regulator receiver protein n=1 T... 218 3e-55 UniRef50_D0IC36 Response regulator n=1 Tax=Grimontia hollisae CI... 217 4e-55 UniRef50_A0LA49 Response regulator receiver protein n=1 Tax=Magn... 217 4e-55 UniRef50_B5FFM8 Hnr protein n=3 Tax=Aliivibrio RepID=B5FFM8_VIBFM 216 1e-54 UniRef50_A0LC21 Response regulator receiver protein n=1 Tax=Magn... 216 1e-54 UniRef50_A0L4R7 Response regulator receiver protein n=1 Tax=Magn... 213 6e-54 UniRef50_A4TWB5 Stage II sporulation E n=1 Tax=Magnetospirillum ... 210 4e-53 UniRef50_Q2W1D4 Serine phosphatase RsbU, regulator of sigma subu... 208 3e-52 UniRef50_A4TY72 Stage II sporulation E n=1 Tax=Magnetospirillum ... 208 3e-52 UniRef50_A3WMP1 Response regulator of sigma subunit, serine phos... 206 1e-51 UniRef50_B3E9J8 Response regulator receiver protein n=1 Tax=Geob... 201 3e-50 UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteo... 200 8e-50 UniRef50_Q12PI4 Response regulator receiver protein n=22 Tax=She... 195 2e-48 UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC ... 194 3e-48 UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional... 193 7e-48 UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional... 193 1e-47 UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional... 190 7e-47 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 189 1e-46 UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional... 189 1e-46 UniRef50_UPI0001744BDF two component, sigma54 specific, transcri... 188 2e-46 UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional... 188 3e-46 UniRef50_B8HVZ9 Sensor protein n=1 Tax=Cyanothece sp. PCC 7425 R... 188 3e-46 UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulato... 187 4e-46 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 187 4e-46 UniRef50_Q7M9T6 TWO-COMPONENT RESPONSE REGULATOR n=1 Tax=Wolinel... 186 8e-46 UniRef50_Q7MQP8 Putative uncharacterized protein n=1 Tax=Wolinel... 186 9e-46 UniRef50_A7HDM5 Two component, sigma54 specific, transcriptional... 186 1e-45 UniRef50_C6WY59 Two component, sigma54 specific, transcriptional... 186 1e-45 UniRef50_B5YFU9 Sensor protein n=1 Tax=Thermodesulfovibrio yello... 185 1e-45 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 185 2e-45 UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional... 185 2e-45 UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1... 184 3e-45 UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional... 184 3e-45 UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional... 184 3e-45 UniRef50_B4VT49 Sensor protein n=1 Tax=Microcoleus chthonoplaste... 184 3e-45 UniRef50_Q1JYH3 Sensor protein n=2 Tax=Proteobacteria RepID=Q1JY... 184 4e-45 UniRef50_Q30WZ9 Two component transcriptional regulator, Fis fam... 184 5e-45 UniRef50_A7BVW4 Adenylate/guanylate cyclase n=1 Tax=Beggiatoa sp... 184 5e-45 UniRef50_Q1D7F8 Sigma-54 activator protein ActB n=7 Tax=Cystobac... 183 7e-45 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 183 7e-45 UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional... 183 8e-45 UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional... 183 9e-45 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 183 9e-45 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 183 1e-44 UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Breviba... 183 1e-44 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 182 1e-44 UniRef50_B2JAB7 Response regulator receiver modulated PAS/PAC se... 182 1e-44 UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional... 182 2e-44 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 182 2e-44 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 182 2e-44 UniRef50_B8FI60 Putative two component, sigma54 specific, transc... 181 2e-44 UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteo... 181 3e-44 UniRef50_A1ZFP4 Two-component hybrid sensor and regulator n=1 Ta... 181 3e-44 UniRef50_B7KDV4 Sensor protein n=1 Tax=Cyanothece sp. PCC 7424 R... 181 3e-44 UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional... 181 3e-44 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 181 3e-44 UniRef50_A0YR26 Regulatory components of sensory transduction sy... 181 3e-44 UniRef50_B3E861 Two component, sigma54 specific, transcriptional... 180 5e-44 UniRef50_B4VMU4 Sensor protein n=1 Tax=Microcoleus chthonoplaste... 180 5e-44 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 180 5e-44 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 180 6e-44 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 180 6e-44 UniRef50_B4AUG4 Sensor protein n=1 Tax=Cyanothece sp. PCC 7822 R... 180 6e-44 UniRef50_C0QLH6 Sensor protein n=2 Tax=Deltaproteobacteria RepID... 180 6e-44 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 180 6e-44 UniRef50_C4L340 Two component transcriptional regulator, winged ... 180 7e-44 UniRef50_A4J443 Two component, sigma54 specific, transcriptional... 180 8e-44 UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional... 179 8e-44 UniRef50_Q3ME76 Sensor protein n=1 Tax=Anabaena variabilis ATCC ... 179 8e-44 UniRef50_A4J616 Two component, sigma54 specific, transcriptional... 179 9e-44 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 179 9e-44 UniRef50_A7BQZ3 Sensory box/GGDEF family protein n=1 Tax=Beggiat... 179 9e-44 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 179 1e-43 UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional... 179 1e-43 UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptiona... 179 1e-43 UniRef50_Q1Q5K2 Similar to two component response regulator n=1 ... 179 1e-43 UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional... 179 2e-43 UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional... 178 2e-43 UniRef50_C6BT74 Signal transduction histidine kinase n=1 Tax=Des... 178 2e-43 UniRef50_UPI0001C38DA3 response regulator receiver modulated dig... 178 3e-43 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 178 3e-43 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 178 3e-43 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 178 3e-43 UniRef50_D0LRM4 Sensor protein n=1 Tax=Haliangium ochraceum DSM ... 178 3e-43 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 178 3e-43 UniRef50_A0LKN3 Response regulator receiver protein n=1 Tax=Synt... 178 4e-43 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 178 4e-43 UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional... 178 4e-43 UniRef50_Q3SKC8 Two Component Transcriptional Regulator, Fis fam... 178 4e-43 UniRef50_Q31DK6 Response regulator receiver modulated metal depe... 177 5e-43 UniRef50_B5JH27 Sensor protein n=1 Tax=Verrucomicrobiae bacteriu... 177 5e-43 UniRef50_C8QXF1 Response regulator receiver modulated metal depe... 177 6e-43 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 177 6e-43 UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=... 176 7e-43 UniRef50_A5F941 Sensor protein n=69 Tax=Vibrionales RepID=A5F941... 176 8e-43 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 176 8e-43 UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction dom... 176 9e-43 UniRef50_A9AW15 Adenylate/guanylate cyclase n=2 Tax=Bacteria Rep... 176 9e-43 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 176 9e-43 UniRef50_C9RLA0 Two component transcriptional regulator, winged ... 176 1e-42 Sequences not found previously or not previously below threshold: UniRef50_A6W0W4 Response regulator receiver protein n=2 Tax=Mari... 211 2e-53 UniRef50_A5F188 Response regulator n=38 Tax=Vibrio RepID=A5F188_... 209 2e-52 UniRef50_Q7MBQ8 Serine phosphatase RsbU n=2 Tax=Vibrio vulnificu... 205 2e-51 UniRef50_Q31GT9 Response regulator receiver domain protein (CheY... 203 6e-51 UniRef50_A6VXG9 Response regulator receiver protein n=1 Tax=Mari... 197 4e-49 UniRef50_Q1IJL8 Response regulator receiver modulated serine pho... 196 8e-49 UniRef50_A3YAB7 Response regulator of sigma subunit, serine phos... 196 1e-48 UniRef50_A6TMP3 Response regulator receiver protein n=2 Tax=Alka... 194 5e-48 UniRef50_D0I4R3 Che cluster related two-component response regul... 194 5e-48 UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional... 193 9e-48 UniRef50_B4AYC7 Response regulator receiver modulated serine pho... 192 1e-47 UniRef50_D1N7N4 Response regulator receiver modulated serine pho... 186 1e-45 UniRef50_B7K304 Response regulator receiver modulated serine pho... 184 4e-45 UniRef50_B6EQT4 Putative response regulator n=1 Tax=Aliivibrio s... 184 4e-45 UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional... 183 6e-45 UniRef50_B3PLM0 Putative response regulator n=1 Tax=Cellvibrio j... 181 4e-44 UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator ... 179 8e-44 UniRef50_Q3A356 Two component, sigma54 specific, transcriptional... 179 1e-43 UniRef50_C0QZI2 SpoIIE, Stage II sporulation protein E (SpoIIE) ... 178 4e-43 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 177 6e-43 UniRef50_A3IRJ3 Sensor protein n=1 Tax=Cyanothece sp. CCY0110 Re... 177 6e-43 UniRef50_Q5DYQ2 Two-component response regulator, sigma factor P... 177 6e-43 >UniRef50_Q48KH7 Response regulator n=23 Tax=Pseudomonadaceae RepID=Q48KH7_PSE14 Length = 458 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 80/342 (23%), Positives = 144/342 (42%), Gaps = 11/342 (3%) Query: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 P ++LI++D+ V R+ L ++ G + + A++G+ +++ PDL++CD+ MP Sbjct: 65 MPKTSAKLLIIDDDDVVRASLAAYLEDSGFSVLQASNGLQGIQMFEQENPDLVVCDLRMP 124 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 +M GL+L+ + QTPV+V+S M+D +ALRLG D L+KP++DL L V Sbjct: 125 QMGGLELIRQVTAIAPQTPVIVVSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRR 184 Query: 123 CLYPSMF-------NSRVEEEERLFRDWDAMVDNPAAAAKLLQ-ELQPPVQQVISHCRVN 174 L + ++E+ R ++ A + +Q + P I + Sbjct: 185 ALDRARLLTENQVYREKLEKANRELEASLHLLQEDQDAGRQVQMNMLPITPWSIDEFKFA 244 Query: 175 YRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQ 234 ++ + + G +D + E +AFY DV+ G + +LL+ + LL E Sbjct: 245 HQIIPSLYLSGDFVDYFRVDERRVAFYLADVSGHGASSAFITVLLKFMTTRLLFESRRGG 304 Query: 235 NQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGL---NATLNTGEH 291 + +L +N L L ++ G E L G + G+ Sbjct: 305 TLPEFKPSDVLGHINRGLISCKLGKHVTMVGGVIDEESGKLTYAVGGHLPLPVLYSEGQA 364 Query: 292 QVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 + G+P+G A A + G L L+ Sbjct: 365 RYLEGRGLPVGLFNEATYQDHEIDLPASFSLTMLSDGILDLL 406 >UniRef50_P0AEV2 Protein hnr n=144 Tax=Enterobacteriaceae RepID=HNR_ECO57 Length = 337 Score = 330 bits (846), Expect = 5e-89, Method: Composition-based stats. Identities = 337/337 (100%), Positives = 337/337 (100%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA Sbjct: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV Sbjct: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA Sbjct: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE Sbjct: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP 300 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP Sbjct: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP 300 Query: 301 LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE Sbjct: 301 LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 >UniRef50_Q21LQ5 Response regulator receiver n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21LQ5_SACD2 Length = 399 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 80/348 (22%), Positives = 147/348 (42%), Gaps = 17/348 (4%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M+Q G+++L+++D+ + R + ++ G ADG AL L P L++ D+ Sbjct: 1 MSQ--SGRRLLVIDDDTIVRQSIAAYLEDSGFLVHQEADGHSALTWLMDNPPCLVLTDLR 58 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP +GL LL+ IR + PV+VIS + D+A+ALR G D L+KP+ D+ L + Sbjct: 59 MPGTDGLTLLKAIREWDVELPVIVISGAGAVHDVAEALRHGASDYLVKPIVDMEVLVHSI 118 Query: 121 FACLYP-------SMFNSRVEEEERLFRDWDAMVDNPAAA-AKLLQELQPPVQQVISHCR 172 L + +E+ + +++ +++ A ++ +L PP Sbjct: 119 RRALERHELIIENRQYRLELEKANKELKEYIRVLERDQLAGRRVQSKLLPPPAVSFGGIN 178 Query: 173 VNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ-- 230 V+Y+ + + G +D LS LAFY DV+ G + L+ + +EQ Sbjct: 179 VDYKIIPSLYLSGDFVDYGFLSNRYLAFYLTDVSGHGAASAFVTVWLKQIVRRFFREQEI 238 Query: 231 LAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGL---NATLN 287 ++ + +LLK +N + ++ + VG + V AG + Sbjct: 239 FNTKDSFERDTASLLKLINKEVIRSKVGAHMTCFVGVIDTHTHEMRYVVAGHLPLPLLIA 298 Query: 288 TGEHQVQISNGVPLGTLGNAYLN--QLSQRCDAWQCQIWGTGGRLRLM 333 G + G PLG +A + + + G L ++ Sbjct: 299 NGRAEYLEGKGKPLGIFEDAEWEVQSIQLPLQQQFSLVVFSDGVLEVL 346 >UniRef50_A4BEJ2 Probable two-component response regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BEJ2_9GAMM Length = 397 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 90/342 (26%), Positives = 143/342 (41%), Gaps = 11/342 (3%) Query: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 L +L+VEDE+ R + ++F G + AA+G + L PDL+ICD+ MP Sbjct: 1 MALNDATLLVVEDEKAVRDSIVAYFEDSGYHIIEAANGSEGLTRFEESKPDLVICDLRMP 60 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 M+GL LL I D+TPV+V+S M D+ +ALRLG D L+KPV DL+ L V Sbjct: 61 GMDGLHLLNRIMESTDETPVIVVSGAGVMTDVVEALRLGAADYLMKPVVDLSVLEHSVER 120 Query: 123 CLYPS-------MFNSRVEEEERLFRDW-DAMVDNPAAAAKLLQELQPPVQQVISHCRVN 174 L S + +E+ + +D D + + A + Q L P Q V Sbjct: 121 ALERSLLFKENYRYRQELEQRNQELQDHVDRLKLDLQAGRAVQQRLLPRFQLQQGGYTVR 180 Query: 175 YRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQ 234 + + G ++D L N L FY DV+ G + L LL++ + E Sbjct: 181 HDMEPSTYLSGDLVDYFELGPNQLVFYIADVSGHGASSALITLLIKTQIDRYRDELENDT 240 Query: 235 NQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGL-NATLNTGEH-- 291 + + G +L+Q+N L + + G + L A A + + EH Sbjct: 241 SDIVTNPGQVLRQINLELLKTQTGKHATMFYGVIDTQEDRLDYAIAAHFPAPVISFEHAG 300 Query: 292 QVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 Q + +G ++ ++ + G LM Sbjct: 301 QAIQPESLAVGLFDDSGYETRHVSLKGFRQLTLLSDGIFELM 342 >UniRef50_Q1N0N5 Response regulator n=1 Tax=Bermanella marisrubri RepID=Q1N0N5_9GAMM Length = 395 Score = 315 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 73/338 (21%), Positives = 132/338 (39%), Gaps = 11/338 (3%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 ++L+++DE + R + ++ G + A++G + + PD+++CD+ MP M+G Sbjct: 5 SGRVLVIDDEAIVRDSIVTYLEDSGFDVIEASNGTEGIACFNSQNPDIVLCDLRMPNMDG 64 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 L +L+ I TP +VIS MAD+ +ALRLG D L+KP+ DL L + L Sbjct: 65 LAVLQSINKSNPNTPFIVISGAGVMADVVEALRLGASDYLIKPIIDLEVLEHSIKRNLRQ 124 Query: 127 SMF-------NSRVEEEERLFRDWDAMVDNPAAAAK-LLQELQPPVQQVISHCRVNYRQL 178 ++E + + A + + + + P Q + +Y + Sbjct: 125 LRLILQNQNYRQQLERKNEQLEHRLEELRLDQQAGREVQKRMLPDPQSQLKGVEFDYHII 184 Query: 179 VAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRL 238 + G +D +S + + FY DV+ G + +LL+ L N L + +Q + Sbjct: 185 PSLYLSGDFIDYFPISADKIVFYVADVSGHGASSAFITVLLKNLTNRLRRNLRRQSSQEI 244 Query: 239 PELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAG---LNATLNTGEHQVQI 295 +L ++N L A L L G L G + + Sbjct: 245 LTPDNVLSRINKELVDAQLGKHVSLFWGMLDLPKGTLSYSVGGQFPMPILCTDYGAEYLQ 304 Query: 296 SNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 P G A + + + G L +M Sbjct: 305 GKSQPAGLFAAAQYQTYDKEITGNFRLLAVSDGILEVM 342 >UniRef50_B0TIH1 Response regulator receiver modulated serine phosphatase n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TIH1_HELMI Length = 394 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 61/338 (18%), Positives = 127/338 (37%), Gaps = 20/338 (5%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 QIL+V+D L+ + G + A +G ALE + PDL++ D+ MP MN Sbjct: 8 SSAQILVVDDVVTNVELMRLQLTRAGYQVLTAFNGEQALESIQRTLPDLILLDVMMPGMN 67 Query: 66 GLKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G ++ ++ PV++++A + D K + G +D + KP + L V + Sbjct: 68 GFEVCAKLKEDPHTQLIPVVLVTALHEVEDRIKGIEAGADDFISKPFNRV-ELLTRVKSL 126 Query: 124 LYPSMFNSRVEEEERLFRDWDAMV-DNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 L ++E+ + +A++ + A + Q L P + + Sbjct: 127 LRIRKLYRQLEKSYQEIESKNAILTEELRMARHVQQHLLPTGYPSMERLVFEVAYRPTIE 186 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 G D ++++++ + DV+ G + + +++ + + QE LA G Sbjct: 187 IGGDFYDFITVNKDEVGVFVSDVSGHGVSAAMLTMVISTMMRSITQETLA--------PG 238 Query: 243 ALLKQVNHLLRQA----NLPGQFPLLVGYYHRELKNLILVSAGLNATL----NTGEHQVQ 294 +L ++N + + + +AG + L ++ + + Sbjct: 239 EVLDRLNLQFGKMVEGELTGTFVTAFSLLVNEATGRVHYANAGHPSPLLLRGDSDDVEKL 298 Query: 295 ISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 ++G PLG A + T G + Sbjct: 299 DTDGFPLGLFDTAVYESREVDILPGDKLVLYTDGIYDV 336 >UniRef50_Q2LXY9 Response regulator receiver domain and a sigma factor phosphatase domain n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LXY9_SYNAS Length = 402 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 62/339 (18%), Positives = 124/339 (36%), Gaps = 14/339 (4%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + ++ILI++D R+LL + G A DG D L + + PDL++ DI MP ++ Sbjct: 1 MKEKILIIDDSPDIRALLARFLRKAGYDIAEAHDGEDGLRQVKAWKPDLILLDIVMPGID 60 Query: 66 GLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G ++ I+ + PV+ +SA AD K L +G D + KP D + + Sbjct: 61 GYQVCRSIKGDSCSRDIPVIFLSARSEAADKIKGLAIGGADYITKPF-DRGEVMARIENQ 119 Query: 124 LYPSMFNSRVE-EEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 + L + ++ AAA + + L P I + ++ + + Sbjct: 120 FKIRHLTYELILANAELTEKQKRLDEDLQAAAGIQRSLLPQKIPQIEGLDIAWKFMPSEQ 179 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFN-------GLLQEQLAHQN 235 G + ++ L E+ + FY +D++ G L + + +A + Sbjct: 180 IGGDIFNVLRLDEDHIGFYMIDISGHGVPAALVTFSVSQALQPHMGYTIRKIPGSVACPD 239 Query: 236 QRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQ 292 + +LK ++ ++ + +L+ +A L G + Sbjct: 240 YEIVPPQEVLKALDGEYPWDRFEKFLTIIYLIVNLREGSLVYSNAAHPPPLLLHQDGAFK 299 Query: 293 VQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + G +G G + + + T G Sbjct: 300 LLDKGGTIIGLDGILPFEEGEETVREGDKILLYTDGVFE 338 >UniRef50_B8F901 Response regulator receiver modulated serine phosphatase n=2 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8F901_DESAA Length = 445 Score = 310 bits (794), Expect = 6e-83, Method: Composition-based stats. Identities = 67/349 (19%), Positives = 131/349 (37%), Gaps = 22/349 (6%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG-FTPDLMICDIAMP 62 +IL+ +D++ + L + S G V A DG A E+L P L + D MP Sbjct: 40 DHTAMKILVADDDRTVQIALKTLLSKWGYEVVTAQDGAQAWEILQDPKAPRLAVIDWMMP 99 Query: 63 RMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 M G L + IR T +++++A + +++ + L G +D + KP L+ + Sbjct: 100 GMEGPALCKKIRQSSLSSYTYLILLTAKTSKSELMEGLEAGADDFISKPFN-AGELKARI 158 Query: 121 FACLYPSMFNSRVEEEERLF--------RDWDAMVDNPAAAAKLLQELQPPVQQVISHCR 172 A ++ + R D + + AA + Q L P ++ Sbjct: 159 TAAERILSLEKELKVKNEALSQSNINLSRSNDIITKDLQVAASVQQSLLPAQTGELNGFS 218 Query: 173 VNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL- 231 + A G + + L +N +AF+ LD++ G + ++ + L+ E+ Sbjct: 219 FGSLFMPCAIVGGDMFNFFPLGDNHIAFFILDISGHGVPAAMLSVTVSKTLTSLIWEEAM 278 Query: 232 -----AHQNQRLPELGALLKQVNHLLRQANL-PGQFPLLVGYYHRELKNLILVSAGLNAT 285 + + L + ++N L + ++ F +++G IL AG Sbjct: 279 TTGISRNGSGTLLSPEDMAAKLNLLFQSSDTLQAYFTMILGITDVRTGRTILTQAGHPHP 338 Query: 286 LN---TGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + G + + G P+G L NA + + + G Sbjct: 339 IRVPSQGALETIGNGGFPVGLLENAEYSGYEFTLNPGDRLYLYSDGITE 387 >UniRef50_Q8YUQ5 Two-component response regulator n=28 Tax=Cyanobacteria RepID=Q8YUQ5_ANASP Length = 421 Score = 306 bits (785), Expect = 6e-82, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 134/338 (39%), Gaps = 19/338 (5%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +IL+++D+++ + +L G +LA +G+ +E P L+ICD M M+ Sbjct: 34 TKVKILVIDDDRIIQLILKQALQEQGYEVILATNGLQGIEQADKHHPALIICDWQMDEMD 93 Query: 66 GLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 GL++ I++ T +++++ + D + L G +D L KP+ D+N L+ V + Sbjct: 94 GLEVCRKIKSEPTLSTTFFILLTSRRAVEDRVEGLDTGADDFLSKPI-DVNELKARVRSG 152 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVD-NPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 L N ++ + + +++ AA ++ + P + +N + L ++ Sbjct: 153 LRLYQTNQELQRLAQDLQLQKQLLETELNEAADYVKSILPQPLSGL--ININSQFLPSSQ 210 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 G D L ++ L Y LDV+ G L ++ N L L + L + Sbjct: 211 LGGDCFDYYWLDDDHLVIYLLDVSGHGLAAA---LPSISIHNLLRSRSLPQAD--LYDPA 265 Query: 243 ALLKQVNHLLRQANLPG-QFPLLVGYYHRELKNLILVSAGLNATLNTG-------EHQVQ 294 +L+ +N + F + G + R + L SAG L + Q Sbjct: 266 QVLRDLNLFFQMDQQNCQYFTMWYGVFKRSSQQLTYASAGHPPALLLSPSTDSQLDIQKL 325 Query: 295 ISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 + +P+G A + + G + Sbjct: 326 ATRSLPIGAFTEAKYCNAICNIQSGSKLYVFSDGVYEV 363 >UniRef50_Q1GCJ7 Phosphoserine phosphatase rsbU n=15 Tax=Rhodobacterales RepID=Q1GCJ7_SILST Length = 423 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 69/347 (19%), Positives = 131/347 (37%), Gaps = 21/347 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +++L+V+D ++ R +L + G V A G DA+++ PDL++ D MP MNG+ Sbjct: 19 RRVLVVDDSRLQRRILVASLKKWGFDVVEAESGEDAMDICRADPPDLILSDWMMPGMNGI 78 Query: 68 KLLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 + R +T +++++ ++A+ L G +D L KPV + LR + A Sbjct: 79 EFCRAFRADSHETYSYFILLTSKSEKNEVAEGLDAGADDFLTKPVSS-DELRARISAGER 137 Query: 126 PSMFNSRVEEEERLFRD--------WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 + E+ R+ + +DA+ + A K+ + L P + + VN Sbjct: 138 ILRMQRELFEKNRIVSETLDELQTVYDAIDKDLIQARKIQESLVPELTRAFGASEVNLLL 197 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQ- 236 G ++ + + N L FY +DV+ G + L + +Q + Sbjct: 198 KPCGHIGGDLVGMFSPGINRLGFYSIDVSGHGITSAMMTARLGGYLSSTYFDQNVGMEKK 257 Query: 237 -----RLPELGALLKQVNHLLR-QANLPGQFPLLVGYYHRELKNLILVSAGLNATL---N 287 L + +N L + F + + +V AG L Sbjct: 258 FNRFYALRPPEEVASVLNARLIADTGIEEYFTMAYCIADLRTGVIKMVQAGHPHPLLLRA 317 Query: 288 TGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLML 334 G + GVP+G + + Q + + + G L Sbjct: 318 DGSMEFIGKGGVPVGLVPDVAYEQEEFVMEKGDRLLLYSDGFTEAHL 364 >UniRef50_Q1NPP0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPP0_9DELT Length = 403 Score = 303 bits (777), Expect = 5e-81, Method: Composition-based stats. Identities = 80/356 (22%), Positives = 137/356 (38%), Gaps = 31/356 (8%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +IL+V+DE+V R +L G ADG AL+ L G DL++ D+ MP ++ Sbjct: 4 QQPRILVVDDEEVNRDILVRRLIRRGYQVEAVADGQQALDWLAGQPCDLVLLDVMMPVLD 63 Query: 66 GLKLLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 GL L +R T PV++ +A ++ D+ AL G D + KP+ D L+ + Sbjct: 64 GLSALRRLRRDFSPTALPVIMTTARDDSEDVVTALEAGASDYVTKPI-DFPVLQARMDTQ 122 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 L + + + AAA + + P R R A+ Sbjct: 123 LRLKRTTEELTA------AYQRIKTEIEAAALVQRAQIPAGPLTFEGWRCACRYQPCAEL 176 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAA-----LLLRA----LFNGLLQEQLAHQ 234 G +L+ L + LA Y LDV+ G L + LL + G Q+ A Q Sbjct: 177 GGDILNYFPLDDELLALYLLDVSGHGAGAALLSSGVGRLLSASGDRITLTGASQDIFADQ 236 Query: 235 ---------NQRLPELGALLKQVNHLLR-QANLPGQFPLLVGYYHRELKNLILVSAGLNA 284 + R G +L ++N ++ F ++ + SAG Sbjct: 237 QAQPPRRRNSDRPASPGEILARLNRRFPIESTTSQFFTIIYVIIDCRQGLVRYASAGHPG 296 Query: 285 TLN---TGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 L +G+ + G+P+G + NA + A ++ + G + + + Sbjct: 297 PLVMEPSGQVRYASGTGLPVGIMENAEFVEHELPLAAGGRMLFFSDGIIEALDHRQ 352 >UniRef50_B1XIW8 Two-component response regulator (RsbV-like) n=1 Tax=Synechococcus sp. PCC 7002 RepID=B1XIW8_SYNP2 Length = 376 Score = 302 bits (774), Expect = 1e-80, Method: Composition-based stats. Identities = 73/333 (21%), Positives = 130/333 (39%), Gaps = 22/333 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 QIL+++D+ R LL+ G A+DG L+L PDL+I D MP MNG++ Sbjct: 3 QILVIDDDLAMRVLLERTLKRKGYQVTTASDGKTGLDLAIATRPDLIISDWMMPEMNGIE 62 Query: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + + ++ D T +++SA + + D L G +D L KP+ + L V + L Sbjct: 63 VCQAVKQHPDLSTTFFILLSALDAVEDKVMGLDAGADDFLCKPISS-HELEARVRSGLRI 121 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 + ++R AA+ ++ L P H +++ + ++ G Sbjct: 122 CRLTQDLTAQKRALE------SELTEAAQYVKSLLPDPLYQ-DHLQIDSCFIPSSQLGGD 174 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 D LS +L FY LDV+ G L ++ + LL+ + + A+L Sbjct: 175 GFDYFWLSPQELVFYLLDVSGHGLKAALPSISILN----LLRSRNKTKGLDYRSPQAVLN 230 Query: 247 QVNHLLRQANLPG-QFPLLVGYYHRELKNLILVSAGLNATL-----NTGEHQVQISNGVP 300 +N + G F + G Y + + + AG + Q+ + G P Sbjct: 231 HLNRTCQFLEQQGQYFTMWYGIYDVDDRIVTYACAGHPPAVLVKPNTGEPPQLLKAQGFP 290 Query: 301 LGTLGN--AYLNQLSQRCDAWQCQIWGTGGRLR 331 +G L + + S + G Sbjct: 291 IGMLPPDLSIYEEHSLYLPFNSRLYLFSDGVYE 323 >UniRef50_B5XRS9 Response regulator n=9 Tax=Enterobacteriaceae RepID=B5XRS9_KLEP3 Length = 404 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 77/337 (22%), Positives = 131/337 (38%), Gaps = 12/337 (3%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + +LIVED V+R LL + G A +GV AL +L L+I D MP M Sbjct: 1 MSAHHVLIVEDSLVYRRLLSRMLTQWGYIVSEAENGVAALAILENQPVSLVISDWEMPEM 60 Query: 65 NGLKLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 NGL L +R R G +++++A E+ D+ + G +D L KPV+ + LR + A Sbjct: 61 NGLTLCREVRRRQFGHYVYLILLTAREDPGDLTQGFAAGADDFLSKPVE-QSELRARLHA 119 Query: 123 CLYPSMFNSRVEEEE-RLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 + + RL + + AA++ Q + P Q ++ L +A Sbjct: 120 GARILSLEADLAARNTRLSEALRQIEQDLELAARIQQSVLPAHQLCYQGFFSDWIFLPSA 179 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLR--ALFNGLLQEQLAHQNQRLP 239 G + ++ L E L FYC+DV+ G + +L + L ++ L + + Sbjct: 180 WVSGDIFNVFPLGE-HLGFYCVDVSGHGVGAAMMSLAVARQFLHGRAVERFLFSADNQPA 238 Query: 240 ELGALLKQVNHLLRQANLP--GQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQ 294 +++ +N F L+ G L AG G + Sbjct: 239 SPAEVVQILNGRFCSDEAEIVSYFTLIYGVIDLTTGEGKLCQAGHPTPFIVTVDGGVRSA 298 Query: 295 ISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 S G P+G + + +S + + G Sbjct: 299 GSGGAPVGLINHLSWADVSFSLAPGERLCLFSDGITE 335 >UniRef50_A0YCS2 Probable two-component response regulator n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCS2_9GAMM Length = 408 Score = 299 bits (767), Expect = 8e-80, Method: Composition-based stats. Identities = 64/340 (18%), Positives = 141/340 (41%), Gaps = 12/340 (3%) Query: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 +Q+L++++++V R + ++ G + A++ L++L P++++CD+ Sbjct: 1 MDTAEQQLLLIDNDEVERKSVAAYLKGAGFIVLEASNVSQGLDILADHQPEVVLCDLNAT 60 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 + L+ I++ TPV+V++ M+D+ ALR G D L+KP+ D+ L + Sbjct: 61 GTDS-GPLQAIKSDFADTPVIVMATDGVMSDVVWALRYGAADYLIKPIADMEVLEHAISR 119 Query: 123 CLYPSMFNSR-------VEEEERLFRDWDAMVDNPAAAAKLLQ-ELQPPVQQVISHCRVN 174 C + +E+ + ++ +++ A + +Q ++ PP + + + Sbjct: 120 CQEQRQLRQQNLDYRQKLEQANQGLQESFKVLELDQLAGREVQLKMLPPTVKQFGKYQFS 179 Query: 175 YRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQ 234 +R + + G +D + ++ + ++ DV+ G + +LL+ +F + L Sbjct: 180 HRIIPSFYLSGDFIDYFTVGDDFVVYFIADVSGHGASSAFVTVLLKNMFARKRSDYLHQN 239 Query: 235 NQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGL---NATLNTGEH 291 + + A+L N L ++ L VG L AG GE Sbjct: 240 DASILSPAAMLDIANRNLLTTDIGKHATLCVGVIDLRTDTLSYSVAGHLPLPMLTVDGEP 299 Query: 292 QVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 Q + G+P+G A + + + G L Sbjct: 300 QYLQTEGMPVGLFEAAEYTEATISLPPSTVLTLFSDGILE 339 >UniRef50_D0ZCI2 Serine phosphatase RsbU, regulator of sigma subunit n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZCI2_EDWTE Length = 421 Score = 297 bits (762), Expect = 3e-79, Method: Composition-based stats. Identities = 70/336 (20%), Positives = 123/336 (36%), Gaps = 14/336 (4%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +LIV+D +R LL + + + A DG AL L ++I D MP M+G Sbjct: 11 TVLIVDDSPGYRRLLATILARWQYRVIEAQDGEQALACLASHRVHIVISDWEMPLMDGAA 70 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 L IR +++++ ++ D+ + G +D L KP+ +LR + A Sbjct: 71 LCRAIRAGDYGHYIYLILLTIRQSTEDMLAGMAAGADDFLTKPLN-QGQLRSRLHAAQRI 129 Query: 127 SMFNSRVEEEERLFRD-WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + + + + + AAA + + L P Q I+ ++ L +A G Sbjct: 130 ISLEATLAARNATLAHAYQQIESDLQAAAAMQRNLLPSHDQTINGFHADWLFLPSAYVSG 189 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL---QEQLAHQNQRLPELG 242 +L+ L + LAFYC+DV G + + A + FN L + Q Sbjct: 190 DLLNYVLLDTHHLAFYCVDVAGHGVSAAMLAQSVAQEFNSALLTHSLLFSPSAQAPAPPH 249 Query: 243 ALLKQVNHLLR----QANLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQI 295 ++ ++N + + F L+ G + L AG L G Sbjct: 250 QVVGELNRRFCLEPQEDGVMRYFTLVYGVLDTRNGQIALCQAGHPTPLWIRADGSLSGVG 309 Query: 296 SNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 G+P+G A + + G Sbjct: 310 DGGLPIGLFEWAAYEDHTLTLAPGDRLCLYSDGVSE 345 >UniRef50_C5BR05 Response regulator receiver domain protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BR05_TERTT Length = 406 Score = 296 bits (759), Expect = 7e-79, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 141/338 (41%), Gaps = 13/338 (3%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 Q+L+++D+ + RS + ++ G + DG E L DL+I D+ MP + GL Sbjct: 7 QLLVIDDDAMIRSSVVTYLEGAGFKVHHSRDGASGCEWLATHPVDLVITDLCMPDVGGLS 66 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP-- 126 +L +++ PV+V+S + D+ +ALR G D L+KP+ DL L V L Sbjct: 67 ILRSVKHCHPNLPVIVLSGVGVVRDVVEALRQGAADYLVKPLVDLEVLVHSVKRVLERQS 126 Query: 127 -----SMFNSRVEEEERLFRDWDAMVDNPAAA-AKLLQELQPPVQQVISHCRVNYRQLVA 180 + +E+ R R++ ++++ A ++ +L P +S +++ + + Sbjct: 127 LLHDNQRYREELEKANRDLREYVRLLEHDQKAGRRVQSKLLPVSPLTVSDITLSFEVIPS 186 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ--LAHQNQRL 238 G +D LS LAFY DV+ G + L L L +EQ + Sbjct: 187 LYLSGDFIDYGFLSRRYLAFYLTDVSGHGAAPAFVTVWLNQLVRRLFREQRIFDSEESFK 246 Query: 239 PELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGL---NATLNTGEHQVQI 295 + +LLK VN + ++ + LVG + + + V AG L + Sbjct: 247 RDAASLLKLVNQEVIRSKIGCHLTSLVGVIDTQTREMRYVVAGHLPLPVLLVGDRCEYLS 306 Query: 296 SNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 G PLG + S + + G L ++ Sbjct: 307 GKGKPLGFFEDGEWEINSVQLPENFTLAVFSDGILEVL 344 >UniRef50_B7JXS3 Response regulator receiver modulated serine phosphatase n=4 Tax=Cyanobacteria RepID=B7JXS3_CYAP8 Length = 379 Score = 293 bits (751), Expect = 5e-78, Method: Composition-based stats. Identities = 73/335 (21%), Positives = 137/335 (40%), Gaps = 23/335 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 QIL+++D+ LL + G + +G D L PDL+ICD MP +NGL Sbjct: 2 AQILVIDDDPTICLLLQRTLTRSGYEVICVNNGQDGLIKAQELCPDLIICDWVMPGLNGL 61 Query: 68 KLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 ++ ++ T +++++ ++ D K L G +D L KP++ +N L V + L Sbjct: 62 EVCSQVKTFPELATTFFILLTSLGSVEDRVKGLDAGADDFLCKPIE-MNELIARVRSGLR 120 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + ++E+++L A + + + P S ++ R + G Sbjct: 121 LHELSQDLKEQKQLLEAELAEAAD------YVTSILPEPLTSTS-LSIDTRFFPSRQLGG 173 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 D L E+ LA Y LDV+ G L +L ++ N L +QL+ + E +L Sbjct: 174 DGFDYFWLDEDHLAIYLLDVSGHGLRAALPSL---SVINLLRSQQLSFVD--YYEPSNVL 228 Query: 246 KQVNHLLRQA-NLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQ-------VQISN 297 +N + F + G Y+++ + LI SAG + + + + Sbjct: 229 SALNQSFQMTYRNDKYFTIWYGVYNQKNRCLIYSSAGHPPAILLETKENKIIKQQLLKTP 288 Query: 298 GVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 G P+G +A+ ++ + G + Sbjct: 289 GFPIGMFLDAHYIDQELVVNSSSSLYIFSDGIYEM 323 >UniRef50_A6GMM8 Response regulator n=1 Tax=Limnobacter sp. MED105 RepID=A6GMM8_9BURK Length = 1026 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 79/350 (22%), Positives = 140/350 (40%), Gaps = 18/350 (5%) Query: 1 MTQPLVGK---QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMIC 57 MT K +IL+V+D V R+L + G AA G +A+EL+ L++ Sbjct: 1 MTDHDPNKLLPRILVVDDSVVERNLFVHMVAKWGYPVEFAASGQEAIELVERDRFQLVLA 60 Query: 58 DIAMPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNR 115 D MP M G +L +R T ++++SA + + KAL G +DVL KPV D N Sbjct: 61 DWQMPGMQGTELCVALRQLDLGQYTYIILMSAQNDEEFLIKALDAGADDVLTKPV-DGNE 119 Query: 116 LREMVFACLYPSMFNSRVEEE-ERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVN 174 L + + + +R+ + L R D + + A + L + P Q Sbjct: 120 LEARLQSAVRRIELQARLARKTAELVRAHDVIAQDLRAVSGLQRSFLPEAQSPFQGLNYQ 179 Query: 175 YRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNG------LLQ 228 + + + G L + L + FY LDV+ G + ++ L +F + + Sbjct: 180 WLSVPSKYVSGDHLQVFELQRDVYGFYLLDVSGHGIPAAVKSMQLVQMFADRSATSIVFE 239 Query: 229 EQLAHQNQRLPE-LGALLKQVNHLLRQANLP-GQFPLLVGYYHRELKNLILVSAGLNATL 286 + QRL ++ ++N L +Q F ++ G ++ + + L AG + L Sbjct: 240 GRFGSDGQRLVSRPRDVVARLNRLFQQTESDLSYFTMIYGVFNTANRRVSLCQAGHPSPL 299 Query: 287 ---NTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 + +V S G P+G + I + G ++ Sbjct: 300 LLSAGKQAEVLGSGGYPVGLFDFDDFEDIELTLGDDDSLILYSDGVTEVL 349 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 60/289 (20%), Positives = 120/289 (41%), Gaps = 17/289 (5%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 GK I+IV+D + F + ++ S G T A +G +AL L+ PD ++ D MP M+G Sbjct: 449 GKSIVIVDDSRSFLRIFEAMLHSWGYTVHSAKNGHEALALIEKHQPDFVLTDWDMPGMSG 508 Query: 67 LKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 ++L E +R + T +++I+ + D+ +LR+G +D + KPV L+ + Sbjct: 509 IELCEQVRAQKQNAYTYIIMITGYASRDDLLNSLRVGADDFMTKPVNP-GELKVRLKTAE 567 Query: 125 YPSMFNSRVEEEERLFRD-WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 + + +E ++A+ + +++ + L P +Q + Sbjct: 568 RIADLHMGLERRHTELSQLYEALQRDMREVSRIQRALLPKSKQDPWPFAIQTIYQPQGYV 627 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL--------QEQLAHQN 235 G + + N+ F+ L++ L + L F+ +E + Sbjct: 628 CGKQMGLLETQANEHGFFMLNMAGQDTATALQTMALARWFSMARATRVLFPVEETSSKIR 687 Query: 236 QRLPELGALLKQVNH---LLRQANLPGQFPLLVGYYHRELKNLILVSAG 281 + L +L Q++ L+ QF LL G + + L++ G Sbjct: 688 RYLASPEQVLAQLSSISPSLKDEPP--QFDLLYGLINLDQGTLLVAGIG 734 >UniRef50_UPI0000E87E96 Response regulator receiver (CheY) modulated Serine phosphatase n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87E96 Length = 387 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 61/343 (17%), Positives = 120/343 (34%), Gaps = 26/343 (7%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALEL-LGGFTPDLMICDI 59 M IL+V+D L+ A G L++ L PDL++ DI Sbjct: 1 MVLTESKPTILVVDDAPANLQLMSGLLQ-ENYRVKAATSGEKGLKIALTSPQPDLILLDI 59 Query: 60 AMPRMNGLKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP M+G ++ + ++ P++ ++A D A L G D ++KPV Sbjct: 60 MMPEMDGYEVCKRLKADERTKGIPIIFLTAKSEAEDEALGLSCGAVDYIIKPVSPP-IAM 118 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 + + +++ L + + AA ++ L P + +++ Sbjct: 119 ARIKTHI------DLYHQKKALIESQKNLAEEINEAATYIRSLLPKPLE--GKVITSWQH 170 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 + + G L E+ L Y +DV G +L ++ N L + L + + Sbjct: 171 IPCSSLGGDAFGYHWLDEDRLGIYLVDVCGHGVGAA---MLCISVINALRSQTLQNTD-- 225 Query: 238 LPELGALLKQVNHLLRQA-NLPGQFPLLVGYYHRELKNLILVSAGLNATL-------NTG 289 ++LK +N F L G Y ++ + L SAG + + Sbjct: 226 FGSPQSVLKGLNEAFPMEKQNNKYFTLWYGVYDKQHQQLTYSSAGHPHAILFTGNSNASK 285 Query: 290 EHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 E + G+ +G + + + + + G + Sbjct: 286 EFHALSTAGIAIGVMPDIEFKENMLPLRSTSKLYVFSDGVYEI 328 >UniRef50_D0ZH67 Response regulator receiver protein n=20 Tax=Enterobacteriaceae RepID=D0ZH67_EDWTE Length = 358 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 192/336 (57%), Positives = 250/336 (74%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M+Q L KQI+IV+D+ VFR LL + ++ G AA+G +AL+L PDL++CD++ Sbjct: 1 MSQVLTDKQIMIVDDDAVFRRLLAGYLTTQGVRVTEAANGREALKLYPQCHPDLILCDLS 60 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP MNG++LL H+ RG QTPV+VISATE+++DIA+A+RLG +DVLLKPV+D RLR+M+ Sbjct: 61 MPEMNGIELLRHLLMRGSQTPVMVISATESVSDIARAMRLGAKDVLLKPVRDFTRLRQML 120 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 ACLYP++F+S EE L DW A+ PA A +LL++LQPPVQQVI+ CRVNYRQL Sbjct: 121 LACLYPALFDSLALEENALSHDWAALQREPAQAVRLLRQLQPPVQQVIAGCRVNYRQLTE 180 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 D GLVLDIA LS D+AFYCLD TR+ GVLAAL++RA+FN LLQ QLA Q + LP Sbjct: 181 PDSCGLVLDIAPLSSRDMAFYCLDTTRSAEYGVLAALMIRAIFNALLQSQLAAQERPLPP 240 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP 300 + +LK+VN LLR+A L GQFP+L GYYH N++LVSAGL+A L + VQ+S +P Sbjct: 241 MSVILKRVNQLLRKAGLRGQFPMLAGYYHAVSGNVVLVSAGLHARLEAEDRTVQLSGAMP 300 Query: 301 LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSA 336 LGTLG+ ++NQLS R WQCQIW + G+LRLML+A Sbjct: 301 LGTLGSIHVNQLSLRSRRWQCQIWSSVGQLRLMLAA 336 >UniRef50_B6AT92 Response regulator n=1 Tax=Rhodobacterales bacterium HTCC2083 RepID=B6AT92_9RHOB Length = 428 Score = 289 bits (741), Expect = 8e-77, Method: Composition-based stats. Identities = 68/346 (19%), Positives = 136/346 (39%), Gaps = 21/346 (6%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + ++LIV+D ++ R ++ + G A GV AL + + PD+++ D MP M+ Sbjct: 18 MNIRVLIVDDSRLQRKIISASLLRRGYDVREADSGVSALTVCAEWPPDVVLSDWMMPEMD 77 Query: 66 GLKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 GL+ + + + +++++ ++A+ L+ G +D L KPV L LR + A Sbjct: 78 GLEFCQKFKALPREGYGYFILLTSKSAKDEVAQGLQCGADDFLTKPVNGL-ELRARLAAG 136 Query: 124 LYPSMFNSRVEEE--------ERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNY 175 + ++ E+L D++ + A KL Q L + +++ Sbjct: 137 ERIIQMQRALLDQTHIVSETLEQLRTVHDSINLDLIEAKKLQQSLVREKHRSFEGADLSF 196 Query: 176 RQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ----- 230 A G ++ +S+ D+ F+ +DV+ G + L L EQ Sbjct: 197 VLHPAGHVGGDLVGYFPVSKTDVGFFAIDVSGHGVSSALMTARLAGYLTSPSPEQNIALT 256 Query: 231 -LAHQNQRLPELGALLKQVNH-LLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN- 287 + + L ++ +N +L + F +++ + E L AG L Sbjct: 257 FEEGDSIGVRPLSDVVVDLNRIVLEEMETDHYFTVILALANMETGQTTLCQAGHPHPLVR 316 Query: 288 --TGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 GE + + G+P+G +A + I + G Sbjct: 317 RANGEIEQDGTGGLPVGLFPDAEFEEFQLTLKPGDQLILASDGVTE 362 >UniRef50_C0QDZ1 Putative chemotaxis response regulator n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDZ1_DESAH Length = 396 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 63/339 (18%), Positives = 119/339 (35%), Gaps = 23/339 (6%) Query: 1 MTQPL-VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDI 59 MT + + + IL+V+D+ V +L LG ++A +G AL + PDL++ DI Sbjct: 15 MTATIKITESILLVDDQPVNLQVLMHTLERLGCKLLVAKNGETALTIAQKARPDLILLDI 74 Query: 60 AMPRMNGLKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP ++G ++ ++ PV+ +SA ++ D + L+LG D + KP + + Sbjct: 75 MMPGIDGFEVCRRLKADPSTQKIPVIFLSALDDTGDKVRGLQLGAVDYVAKPFQP-EEVI 133 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 V L + V+++ ++L + L P + R+ Sbjct: 134 ARVNTHLTIHRLSREVQQQRDELEH------ELQVVSQLQRNLLPERLPQVPGLRLAVHY 187 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 + G D L LA D + + ALF + Sbjct: 188 ETSRYAGGDYYDFMTLPGGLLAVLIADAEGHSAPAAVMMAMTCALFRS--------CSTG 239 Query: 238 LPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTG-----EHQ 292 L E +L +N L + N + Y + L + AG + + Sbjct: 240 LAEPDRMLSFINENLCKVNRDSFVTAVYAVYDPARRTLRIACAGHPLPILYRFSEKAAAE 299 Query: 293 VQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + + + +G A + ++ T G Sbjct: 300 IPCDSVLLMGLGPYADVPVTEVTLHPGDRILFYTDGVTD 338 >UniRef50_Q608Q0 Response regulator n=1 Tax=Methylococcus capsulatus RepID=Q608Q0_METCA Length = 391 Score = 287 bits (734), Expect = 6e-76, Method: Composition-based stats. Identities = 72/347 (20%), Positives = 133/347 (38%), Gaps = 23/347 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +IL+V+D+ + + + LG A DG +ALE + +I D MP +NG Sbjct: 1 MRILLVDDDPIAVLAVAVYLRKLGYEVTSARDGREALERFRSQRFEFVISDWNMPHLNGE 60 Query: 68 KLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 +L +R+ ++++ ++ + + + G +D L+KPV D LR + A Sbjct: 61 ELCRQVRSLKLPHYVYFILLTGRDDKDSLLRGMEAGADDFLVKPV-DREELRARIRAGER 119 Query: 126 PSMFNSRVEEEERLFRDWDA--------MVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 ++++ RL D + + ++ A AA + + L P + V Sbjct: 120 ILRLEQQLDQRGRLLEDMNRELKQAYQTIRNDLATAAAIQKSLLPEP-WTLPDLEVRSLF 178 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAAL-----LLRALFNGLLQEQLA 232 + + G + L + + + LDV+ G + L ++ LL++ + E Sbjct: 179 VASDFLAGDMFGYFPLDDRRVGLFQLDVSGHGVSAALISVALSKCLLQSRSLDVTAEGPP 238 Query: 233 HQNQRLPELGALLKQVNHLLR-QANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---- 286 +L+++N Q F ++ RE L L +AG L Sbjct: 239 APTCGSLPPNRMLEELNRFFAGQPEANSYFATMIYALLDRETGRLDLSTAGHPPPLMWKG 298 Query: 287 NTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 TG+ G+PLG L + S R A + G M Sbjct: 299 ETGDIVESGVRGLPLGVLADRRYACESHRLAAGDRFFAYSDGITECM 345 >UniRef50_B3PDM6 Response regulator n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PDM6_CELJU Length = 406 Score = 286 bits (732), Expect = 8e-76, Method: Composition-based stats. Identities = 80/352 (22%), Positives = 143/352 (40%), Gaps = 17/352 (4%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG--FTPDLMICD 58 MT L +++LI++D+ + R + ++ G D AL LL P L+I D Sbjct: 7 MTN-LADRKLLIIDDDALVRQSIVTYLRDSGFLVSDTGDAQAALALLQDADHLPHLVITD 65 Query: 59 IAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 + M ++GL+LL+ + + + PV+VIS M+D+ ALRL D L+KP+ DL L Sbjct: 66 LRMAGVDGLQLLQELHDLYPKLPVIVISGAGVMSDVVAALRLCARDYLIKPIVDLEVLVH 125 Query: 119 MVFACL-------YPSMFNSRVEEEERLFRDWDAMVDNPAAA-AKLLQELQPPVQQVISH 170 V L + ++E R ++ ++ A ++ + + P Sbjct: 126 SVNRVLDQCELESENLRYREQLEAANRELKENLRALERDHIAGRRVQRRMMPSGISTEEG 185 Query: 171 CRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ 230 + + G +D A + LAFY DV+ G + + L+ L + ++++ Sbjct: 186 YVAAHTIAPSLFLSGDFVDYAHIKRRYLAFYLADVSGHGASSAFVTIWLKYLVSRMVRDD 245 Query: 231 LAHQNQRLPELGA--LLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGL---NAT 285 ++ E GA +L+Q+N L + L VG + V AG Sbjct: 246 GLFGDENSFEQGANTMLQQINRELHETRLSHHLTFFVGVIDTFTGQMRYVVAGHLPMPIL 305 Query: 286 LNTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 + Q G P+G + + + + + G L + LS E Sbjct: 306 ITDTGAQYLQGMGKPVGIFKDVIWSTYQCQLPERFSLVCFSDGVLEI-LSPE 356 >UniRef50_B9M3D6 Response regulator receiver modulated serine phosphatase n=1 Tax=Geobacter sp. FRC-32 RepID=B9M3D6_GEOSF Length = 383 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 66/336 (19%), Positives = 115/336 (34%), Gaps = 20/336 (5%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT-PDLMICDIAMPR 63 + +IL+V+D LL T+ A +G AL PDL++ DI MP Sbjct: 1 MERSRILLVDDTPENLELLAEIL-GESYATISAGNGEAALVAASTQPLPDLILLDINMPD 59 Query: 64 MNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVF 121 M+G ++ ++ + PV+ +S + D KA + G D + KP + + ++ V Sbjct: 60 MDGYEVCRRLKEDPLLREIPVIFLSGLDATQDKVKAFKAGGVDYITKPFQ-FDEMQARVT 118 Query: 122 ACLYPSMFNSRVEEEERLFRD-WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 + F S +E++ R +D +D + ++ + L P + + A Sbjct: 119 THVRLRQFQSELEQKGRELQDAYDRLDREFRCVGEVQKSLLPDRLPDVPGFDLASYYCPA 178 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 G D+ ++ + DVT G + + + H Sbjct: 179 RRAGGDYFDVLPVNGKRWGIFVADVTGHGPPAAIVTAMTHVML---------HLAPCKDH 229 Query: 241 LGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLNTGEHQVQIS--- 296 LL +N L QF G + I SAG L + + + Sbjct: 230 PDKLLSFLNRTLYGRTQEDQFVTAFYGILDPDSGEFIFSSAGHTPPLLCKKTENSRAVCF 289 Query: 297 -NGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 G+PLG Q + T G Sbjct: 290 DAGLPLGINPLEEYTTTRQILATGDIFLLYTDGITE 325 >UniRef50_B8G3T7 Response regulator receiver modulated serine phosphatase n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8G3T7_CHLAD Length = 385 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 67/336 (19%), Positives = 117/336 (34%), Gaps = 15/336 (4%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M L G +ILI++D + R LL G + A+ G LE D+++ D+ Sbjct: 1 MADQLTG-RILIIDDSEHNRYLLTRQLERRGHSIATASHGRQGLEYAQREPFDVILLDLM 59 Query: 61 MPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP M+G +L+ ++ PV+VISA + D+ + + G ED L KP L Sbjct: 60 MPEMDGFTVLDQLKRNPQTHHIPVIVISAINEIDDVVRCIEAGAEDYLTKPFN-QTLLYA 118 Query: 119 MVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQL 178 + ACL + +A+ + + P ++ + + Sbjct: 119 KINACLERKRLRDSEQA------YLNAIRYELELGRRTQADFLPTSLPHLTGWEITAAFV 172 Query: 179 VAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRL 238 A + G D L + L + DV G L L R+L +++ + L Sbjct: 173 PAREVAGDFYDAFLLPDQRLVCFLGDVCDKGVGAALFMALTRSLLRAFIEQAATNGTDPL 232 Query: 239 PELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQI 295 + + + R + + + V+AG L G I Sbjct: 233 RAVAMTNEYIARHHRANRT--FSTIFCIMFEPQSDLARYVNAGHPEPLIIRADGSVSHLI 290 Query: 296 SNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + G +G + +A + A T G Sbjct: 291 TTGPAVGWIADARFTIETTTLRAGDILFAYTDGVTE 326 >UniRef50_A8FXH7 Response regulator receiver modulated serine phosphatase n=3 Tax=Shewanella RepID=A8FXH7_SHESH Length = 470 Score = 284 bits (727), Expect = 3e-75, Method: Composition-based stats. Identities = 61/338 (18%), Positives = 122/338 (36%), Gaps = 19/338 (5%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 G +L+VED R + +G + G +A+E D++I D MP M Sbjct: 17 EGLSVLVVEDTHSERCFITHLLEMMGLKVTSCSSGEEAIESYQQEKADMIISDWRMPGMT 76 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G +L ++++N +++++A + G +D L KP + L+ V A Sbjct: 77 GPELCQYLKNIDPSLYIILLTANNQTKHTVIGIESGADDFLTKPFIP-SILKARVLAGAR 135 Query: 126 PSMFNSRVEEEERLFR--------DWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 ++E + + +AAKL L P + + ++ + Sbjct: 136 IVNMQRQLENRNSELNTSLTKEQAYLQQIQKDIDSAAKLQGSLLPTSSTLQNGWKLATQF 195 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 A + G + + ++ L FY LDVT G + + L + Sbjct: 196 QPAQELAGDIFQCLEIDDSHLGFYLLDVTGHGIAASMQSFTLAQRL------SCNSCDWA 249 Query: 238 LPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLNTGEHQ---V 293 + ++ Q+N G+F L++G + + L AG + + + Sbjct: 250 SLDPALIVTQLNADFEDPEHSGRFATLVLGVVNTTSGKVKLTIAGHPLPILIKGDETEVM 309 Query: 294 QISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + +G+PLG + + + Q + + G Sbjct: 310 DLISGIPLGIDSHYHYEFNTFLLSPEQQLLLYSDGLYE 347 >UniRef50_A8GZ93 Response regulator receiver modulated serine phosphatase n=6 Tax=Gammaproteobacteria RepID=A8GZ93_SHEPA Length = 400 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 68/342 (19%), Positives = 136/342 (39%), Gaps = 18/342 (5%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT-PDLMICDIAMPRM 64 +GK+IL+VED +V + L+ SS G V A DGVDA+ L L++ D MP++ Sbjct: 1 MGKEILLVEDNKVMQLLMTKMLSSRGYQVVTAFDGVDAIAQLEKHPSIQLVLSDWMMPKL 60 Query: 65 NGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 NG++L H+++ +++S ++ I + + G +D + K ++N L + A Sbjct: 61 NGIELCYHLKSSDYGRYIFFVLLSGRDDEESIVEGINAGADDFVAKE-TNINELDARLKA 119 Query: 123 CLYPSMFNSRVEEEE-RLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 ++++ + L R + + + +A L++ + P + + ++Y + +A Sbjct: 120 GFRSLELHNQLMSKNIELDRAYATIRQDLDSANALIRRMLPSQTEFL-GVELHYTHIPSA 178 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALF--NGLLQEQLAHQNQR-- 237 G +L L E +A Y DV G L + ++ N + + Sbjct: 179 QIGGDMLGCMQLDEEHVAIYLFDVAGHGVASALMSFAIQQSISSNSGTHSHVKGKKDTDP 238 Query: 238 ---LPELGALLKQVNHL-LRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL----NTG 289 L + +L ++N L Q N F ++ + + L SAG + + Sbjct: 239 FYMLRDPSEVLARLNQSYLSQDNNNLYFTMVYAVLNIKSGLLSYASAGHPPMIWLQTQSQ 298 Query: 290 EHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + G A + + + + G Sbjct: 299 TAHFIEQDSFVAGMFDFASYQTELVQLEQGDRILLYSDGITE 340 >UniRef50_C4XPV8 Response regulator receiver protein n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XPV8_DESMR Length = 384 Score = 281 bits (720), Expect = 2e-74, Method: Composition-based stats. Identities = 59/328 (17%), Positives = 127/328 (38%), Gaps = 16/328 (4%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++LIV+DE++ +L + + + ++A DG A++L PDL++ DI MP M+G + Sbjct: 3 KVLIVDDERINIHILSAALKND-HSVIIAIDGTTAIDLALSERPDLILLDIMMPGMDGYE 61 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 ++ P++ I+A + + L G D + KP + ++ V + Sbjct: 62 ACSKLKASPATRDIPIIFITALSDAKSESHGLECGAIDYITKPFN-VALVKSRVKNHVEL 120 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 + + + A+ + +A + + L P +Y+ G Sbjct: 121 KIARDLLALK------QVAIDEALRSAGLIQKSLLPKKLPNFKSVEFSYKFQPCNAIGGD 174 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAH--QNQRLPELGAL 244 +L++ L ++ + FY +DV+ G + + A+L+ L N L + R+ + Sbjct: 175 ILNVLCLDDSHIGFYLVDVSGHGPSSAMIAVLVYQLMNPFTGILLDNFTIPPRVRSPEEV 234 Query: 245 LKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQISNGVPL 301 L ++ F ++ + L +A + L G + +G + Sbjct: 235 LNILDKEFPLMRFKKHFTIIYAILNITTGLLTYSNAAHCSPLVLSKDGALKTLDVSGTVI 294 Query: 302 GTLGNAYLNQLSQRCDAWQCQIWGTGGR 329 G NQ + ++ + G Sbjct: 295 GL-AAMPFNQENVTIHPGSKVVFVSDGV 321 >UniRef50_D0MCI0 Serine phosphatase RsbU regulator of sigma subunit n=13 Tax=Vibrio RepID=D0MCI0_VIBSE Length = 397 Score = 280 bits (717), Expect = 5e-74, Method: Composition-based stats. Identities = 64/338 (18%), Positives = 135/338 (39%), Gaps = 16/338 (4%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-GFTPDLMICDIAMPRMNG 66 K IL+V+D + + S G + DG ALE+L ++ D+ MP +NG Sbjct: 2 KSILLVDDSKTVLLYISSALEKQGYEVIAVEDGQSALEVLTYRKDIQFVLSDLMMPGING 61 Query: 67 LKLLEHIRNRGDQTPV--LVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 ++L ++++ + + +++S+ + + I K + G +D + K + L+ + A Sbjct: 62 IELCRQLKSQVSERYIFFVLLSSRNDQSSIVKGIDAGADDFVDK-KTSVEELQARIRAGF 120 Query: 125 YPSMFNSRVEEEE-RLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 ++++ E L + + + +A+ L+++L P + I + + +Y + Sbjct: 121 RTLQLHNKLVERNKELDAAYQTIHQDLQSASHLMEQLLPA-ESSIQNMQFSYAYKPCSQI 179 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAAL-----LLRALFNGLLQEQLAHQNQRL 238 G +L L E +AFY DV+ G + L A L + L + +L + + Sbjct: 180 GGDMLGYFELDEQHVAFYVFDVSGHGVSSALMAFSIQQTLSQNLGPDSITMELRDGDYCI 239 Query: 239 PELGALLKQVNHLLRQANLPG-QFPLLVGYYHRELKNLILVSAGLNATLN----TGEHQV 293 E A++ ++N +Q F ++ + E L +AG L T ++ Sbjct: 240 SEPAAVIDRLNRRYQQTRNSQLYFTMVYAILNTESGQLRYCTAGHPKFLVWRASTETTEL 299 Query: 294 QISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + +G L + G + Sbjct: 300 AGEDNFMIGALQPMEYVGNQIILSEGDVVWLYSDGLIE 337 >UniRef50_Q1IMF3 Response regulator receiver modulated serine phosphatase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMF3_ACIBL Length = 384 Score = 280 bits (716), Expect = 6e-74, Method: Composition-based stats. Identities = 63/338 (18%), Positives = 116/338 (34%), Gaps = 23/338 (6%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALEL-LGGFTPDLMICDI 59 M K IL V+DE + S +A +G A+EL + PDL++ D+ Sbjct: 1 MANTDEKKVILAVDDEPQNLEIAYSILKDT-YKVRIATNGEKAIELAVATPHPDLILLDV 59 Query: 60 AMPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP +NG ++ ++ PV+ ++ +A+ K +G D + KP L ++ Sbjct: 60 MMPGINGYEVCARLKENAATKDIPVIFLTGQTEVAEETKGFAVGAADYIHKPFSPL-VVQ 118 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 V + ++ E+ + + A + + P ++ + R Sbjct: 119 ARVNMHMSLRTAQKQIAEQ------LKRIHEEMECARNIQLSIIPREVPKLAGLDIAARY 172 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 + G D + + DV+ G L + +L+ F+ Q Q Sbjct: 173 IPMTAVAGDFYDFIVPDDKHVGVLVADVSGHGMPAALISSMLKIAFHA--------QEQN 224 Query: 238 LPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL----NTGEHQV 293 + + +L +N L Y E K L AG L GE + Sbjct: 225 VADPSKVLDGLNQTLCGKFSDHFVTAAYVYLDLEKKVLRYAGAGHPPILIGSDRNGEVRR 284 Query: 294 QISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 NG+ L + A + + + T G + Sbjct: 285 VEENGLILSFMPVAQYASVELPLNIGDRVVLYTDGIVE 322 >UniRef50_A3PNQ6 Response regulator receiver protein n=2 Tax=Rhodobacter sphaeroides RepID=A3PNQ6_RHOS1 Length = 418 Score = 280 bits (716), Expect = 7e-74, Method: Composition-based stats. Identities = 65/347 (18%), Positives = 124/347 (35%), Gaps = 24/347 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 + +LIV+D + R L+ + G AA +AL L G D+++ D MP M+GL Sbjct: 14 RHVLIVDDSRAQRRLVALSLARWGYRVSEAATASEALALCKGGDVDIVLSDWMMPGMSGL 73 Query: 68 KLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 +L IR + +++++ ++ L G +D L+KP + LR + A Sbjct: 74 ELCRRIRALPGEAYCYFILLTSRSGTGEVVDGLDCGADDYLVKPAAP-DELRARLRAGER 132 Query: 126 PSMFNSRVEEEERLFRD--------WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 + + ++ +L ++++ + A +L Q + V Sbjct: 133 VLSMQAELVDKNQLLERAFSELRTIYESLDRDLVEARRLQQSFARDRSRRFGRSSVTLLL 192 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 + G + L +A Y +DV+ G L L L +GL + ++ Sbjct: 193 RPSGHVGGDLAGSLDLGTGRIALYSIDVSGHGVASALMTARLAGLLSGLSPDGGVARSDG 252 Query: 238 L---------PELGALLKQVNHLLR-QANLPGQFPLLVGYYHRELKNLILVSAGLNATLN 287 L ++N ++ + F + L LV AG + Sbjct: 253 ACGQCAGHDSWPPEILAARLNRMMIADLGVEQYFTMAYAEIDLRSGALALVQAGHPHPVV 312 Query: 288 ---TGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 G ++ G+P+G L +A + R + G Sbjct: 313 LRAGGRVELLGQGGLPVGLLPDATFERSETRLLPGDRLFLLSDGVTE 359 >UniRef50_A1WTI7 Response regulator receiver protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WTI7_HALHL Length = 395 Score = 278 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 69/330 (20%), Positives = 124/330 (37%), Gaps = 15/330 (4%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT-PDLMICDIAMPRMNGLK 68 +L+V+DE + LL ++A G AL+++ PDL++ DI MP ++G Sbjct: 14 VLVVDDEPINLELLGRLLGDA-YRVLVARSGEQALDIVARERLPDLVLLDITMPGISGYD 72 Query: 69 LLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +L+ ++ PV+ ISA + D A L G D + KP +R V A + Sbjct: 73 VLDALQGEPRTRGVPVIFISARGDWEDEADGLARGAVDYITKPFNS-AVVRARVGAHVKL 131 Query: 127 SMFNSRVEEEERLFR-DWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + + + R + ++ A+++ Q L P + +++ +A G Sbjct: 132 KVRSDLLAANYRQLEAQQQRIEEDLRVASRIQQSLLPSAPPPGAGYALDWYYRPSAGLGG 191 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 + L + L Y LDV+ G + L + + + E +R ALL Sbjct: 192 DLFVTIPLEDGRLVLYMLDVSGHGVSAALVSFSVAQSIRQWVAE------RRQVSPAALL 245 Query: 246 KQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGVPLG 302 ++ F L+V Y + + +AG L G + G+P+G Sbjct: 246 DALDAEYPLERFDKFFTLIVLVYDPAAREIRYANAGHPPGLLIRQRGGSIPLEAGGLPVG 305 Query: 303 TLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 G + T G + L Sbjct: 306 IGGWGRYEEGRVAVAEGDLLFIYTDGLVDL 335 >UniRef50_C4XP67 Response regulator receiver protein n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XP67_DESMR Length = 389 Score = 277 bits (710), Expect = 4e-73, Method: Composition-based stats. Identities = 67/333 (20%), Positives = 127/333 (38%), Gaps = 16/333 (4%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG-FTPDLMICDIAMPRMNG 66 +ILI ED+ R +L LG V +G++A + + P L I D MP ++G Sbjct: 1 MRILIAEDDPASRKILTVCLEKLGYQVVATTNGLEAWQAMQQADAPKLAILDWMMPEIDG 60 Query: 67 LKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +++ +R Q ++++SA DIAK L G +D L KP L L+ + + Sbjct: 61 VEVCRRLRAINARQQPYLILLSALGTKEDIAKGLDAGADDYLTKPFNVL-ELQARIKVGV 119 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 +E + RL + + + + AA ++ + L P + ++ + Sbjct: 120 RL------LEMQARLRQSMETIEASLLAAGEIQKSLLPKHFIGVGSLEFAWQFVPCDAIG 173 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQ--NQRLPELG 242 G V +I L + Y +DV G + ++L+ L N H R+ E Sbjct: 174 GDVFNIVPLDAQRVGLYMVDVAGHGPAAAMVSVLVYQLLNATTGILADHTVKPPRILEPE 233 Query: 243 ALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQISNGV 299 +L+ ++ F ++ ++ L +AG + + + G Sbjct: 234 EVLRILDGEFPLMRFKRHFTIVYAVFNHATGVLTYSNAGHCSPMVVDPNAGVTALTTAGT 293 Query: 300 PLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 +G G Q S ++ + G + Sbjct: 294 VIGV-GAMPFGQESVALSPGYKVVFCSDGVEEI 325 >UniRef50_B0SE00 Sensor protein n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SE00_LEPBA Length = 1065 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 128/332 (38%), Gaps = 23/332 (6%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP-DLMICDIAMPRMN 65 ++++V+DE + R +L + + +G AA+GVDA+ L+ P +LM+ DI MP M+ Sbjct: 692 KLRVIVVDDEPINRQVLKNHLTLIGCEVREAANGVDAIRLVRDEGPFELMVLDIMMPGMS 751 Query: 66 GLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G + +R Q P+L ++A +ADI AL G D L KP D L Sbjct: 752 GYDVCTVLRESYSLYQLPILFLTAKNQIADIIAALEAGGNDYLAKPF-DKRELISRAKNL 810 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 + VEE+ + + A+ + A KL + P + + + Sbjct: 811 I---TLKKAVEEQNK----FIAIQNELGLARKLQYSILPEEAPNVVGIKTEFYYEPMDSI 863 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGA 243 G D A+SE +L DV+ G L + +L+ F+ Q + E Sbjct: 864 GGDFFDFHAISETELGVLIADVSGHGIPAALVSAMLKIAFST--------QVRLAKEPSQ 915 Query: 244 LLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP--- 300 LL Q+N L Y + E K +I G + + + +P Sbjct: 916 LLNQINSTLLGKMKGAFVTASYVYINLETKEMIHARCGHPPLIINRRGESKAKLSIPQGK 975 Query: 301 -LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 +G + + + + + T G Sbjct: 976 LIGWIPELDIQEDRISIRSGDRIVLYTDGITE 1007 >UniRef50_A0Z812 Response regulator n=4 Tax=unclassified Gammaproteobacteria RepID=A0Z812_9GAMM Length = 399 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 66/345 (19%), Positives = 132/345 (38%), Gaps = 12/345 (3%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP-DLMICDI 59 MT + +++LIV+D+ L +A + D LG +P D ++C+ Sbjct: 1 MTIDIDHRRVLIVDDQSTRAHHLIDALGMDAFEFDVANEVPDLQGALGPDSPWDCVLCNA 60 Query: 60 AMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 + ++ + +RN Q PV+V++ +N+ + AL LG D +KP L+ Sbjct: 61 GLINVSWASVRRAMRNFDVQVPVIVVADEQNVDSMKTALGLGATDFFVKPHARPGLLKRS 120 Query: 120 VFACLYPSMFNSRV-------EEEERLFRDWDAMVDNPAAAAK-LLQELQPPVQQVISHC 171 + C+ + E R +++ A + + + L P Sbjct: 121 IERCVNHRYLQRELKASKEDVERSNTELRHSLRVLEQDQQAGRQVQRALLPSGALHQGDY 180 Query: 172 RVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL 231 ++ + + G D ++ E+ +AF+ DV+ G + A +LL+ LF + L Sbjct: 181 WFSHTIVPSLYLSGDFTDYFSVGEDQIAFFLADVSGHGSSSAFATVLLKNLFARKRSDFL 240 Query: 232 AHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAG---LNATLNT 288 + + +L+ N+ L + + ++VG + + L AG L+ Sbjct: 241 RRGDHSVVSPKDMLELANNELLELAINKYATMIVGVLNFKSHQLTYSIAGHLPHPVLLDE 300 Query: 289 GEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 + G P+G + +A Q + G L L+ Sbjct: 301 NSVRYLEGEGPPVGLMRDARYTQHEVVLPEHFVLALLSDGILELL 345 >UniRef50_A3JMA6 Response regulator n=2 Tax=Rhodobacterales RepID=A3JMA6_9RHOB Length = 430 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 60/350 (17%), Positives = 122/350 (34%), Gaps = 21/350 (6%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 T +L+V+D + R +L + G AA G +A+ +L++ D M Sbjct: 12 TSAPATLSVLVVDDSKGQRRILSASLKRAGYDVTEAASGEEAVLACQEKQFNLVLSDWIM 71 Query: 62 PRMNGLKLLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 P MNGL + R T +++++ + L +G +D L KPV L Sbjct: 72 PGMNGLDFCKAFREMERDTYGYFILLTSKAEKNAVTLGLDVGADDFLTKPVNG-AELLAR 130 Query: 120 VFACLYPSMFNSRVEEEERLFRD--------WDAMVDNPAAAAKLLQELQPPVQQVISHC 171 + A + + ++ +DA+ + A K + L Q Sbjct: 131 MKAGERILSMEHEKDMQNQMLSKSRDEIQILYDAIDRDLLEAKKFQEALLSEKYQKFGDS 190 Query: 172 RVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL 231 V+ + G ++ ++S+ + Y +DV+ G + L L + +Q Sbjct: 191 SVSLYLKSSGRVGGDLVGYYSISDEKIGLYSIDVSGHGISSALMTARLAGFLSDGSPDQN 250 Query: 232 AH------QNQRLPELGALLKQVNH-LLRQANLPGQFPLLVGYYHRELKNLILVSAGLNA 284 R + +N +L + F +L+ ++ + AG Sbjct: 251 VGLIKGKDGIYRARSPEQAVAILNEIVLNDMDTELYFTILLVEADLCTGHMRMSQAGHPH 310 Query: 285 TLN---TGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + G + + G+P+G + A + + +A + + G Sbjct: 311 PVVQRANGTVEFPGNGGLPVGLIPGAEFDSFEVQLEAGDRLLLTSDGVTE 360 >UniRef50_Q16D14 Response regulator n=7 Tax=Rhodobacteraceae RepID=Q16D14_ROSDO Length = 403 Score = 273 bits (698), Expect = 7e-72, Method: Composition-based stats. Identities = 69/339 (20%), Positives = 135/339 (39%), Gaps = 21/339 (6%) Query: 13 VEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEH 72 V+D ++ R +L S G + AA G +AL++ P+L+I D MP M+G++ + Sbjct: 2 VDDSRLQRKILSSSLVRWGYEVIEAASGEEALDICIAQRPELVISDWVMPMMDGIQFCKE 61 Query: 73 IRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMFN 130 R + +++++ D+A+ L G +D L KPV N LR + A Sbjct: 62 FRELTSDSYGYFILLTSKSEKNDVAEGLDAGADDFLTKPVNG-NELRARITAGERILKMQ 120 Query: 131 SRVEEEER--------LFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 + ++ R L R +D++ ++ A KL + L P + I ++ + Sbjct: 121 LELTQKNRVIGDTLKELQRLYDSLDNDLIEANKLQESLIPERFKQIGDSHLSLLLRSSGH 180 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL------AHQNQ 236 G ++ + L Y LDV+ G + L L +G +Q + Sbjct: 181 VGGDLVGHYPAGDGHLGLYSLDVSGHGISSALMTARLAGYLSGSAPDQNIALEKGEDGSY 240 Query: 237 RLPELGALLKQVNHL-LRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN---TGEHQ 292 R L ++ +N + L + F L++ + +++ AG + +GE Sbjct: 241 RSRPLFEAIETLNEMVLDEMETEHYFTLMLADINLRTGEVLIAQAGHPHPVIQRKSGEIT 300 Query: 293 VQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + + G P+G + Q + + + + G Sbjct: 301 QKGTGGFPVGLMSGVTFEQFETKLEPGDRLMIFSDGVTE 339 >UniRef50_Q2W8A5 Serine phosphatase RsbU regulator sigma subunit n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2W8A5_MAGSA Length = 537 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 75/336 (22%), Positives = 126/336 (37%), Gaps = 22/336 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++L+ +D + R +L + S G V ADG+ A+E + G DL++ D+ MP MNG + Sbjct: 160 RVLVADDSKANRDVLVRYLSREGHQVVAVADGLAAVEAVFGQAFDLVLLDMIMPGMNGDE 219 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +L+ I+ PV++ISA + + I + + G ED L KP + LR + ACL Sbjct: 220 VLKAIKADSRLRSLPVIMISALDGLDSIVRCIEAGAEDYLPKPFNRV-LLRARIGACLEK 278 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 A+ A ++ + + P V S + A + G Sbjct: 279 KRLREV------ELSYLQALEKELTIAREVQRSILPKVFPPHSSLAGHGLMDPAREVGGD 332 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 D AL + + DV+ G + ++R QL L Sbjct: 333 FYDFFALDGDRIGIAVGDVSGKGVPAAVYMAMVRT--------QLRATALFGLSPAECLG 384 Query: 247 QVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLN----TGEHQVQISNGVPL 301 ++N L N G F L G + G N + G V +N + + Sbjct: 385 RLNDHLSADNPEGMFVSLFYGIMDCATGVFTYANGGHNWPVVLRAEGGVEWVAGTNDLLV 444 Query: 302 GTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 G +G + + + T G + + AE Sbjct: 445 GVMGGSDYHDAALALAPGDSLFVYTDGVVEAIDPAE 480 >UniRef50_A4WVX0 Response regulator receiver protein n=5 Tax=Rhodobacterales RepID=A4WVX0_RHOS5 Length = 418 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 61/348 (17%), Positives = 126/348 (36%), Gaps = 24/348 (6%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 + +L+V+D + R LL G AA +AL+L D+++ D MP ++G Sbjct: 13 SRHVLVVDDSRAQRRLLALSLRRWGYRVSEAAGADEALDLCRTAGIDIVLSDWMMPGLSG 72 Query: 67 LKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 L L IR + +++++ ++ L G +D L+KPV LR + A Sbjct: 73 LDLCRLIRALPRENYCYFILLTSRSGTGEVVDGLDCGADDYLVKPVAS-GELRARLRAGE 131 Query: 125 YPSMFNSRVEEEERLFRD--------WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYR 176 + + + L + ++ + + A KL Q L + + Sbjct: 132 RVLGMQAELVGKNHLLEEAFGELRAVYETLDRDLIEARKLQQSLARDRHRRFGNSTATLL 191 Query: 177 QLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ------ 230 + G + ++ +A Y +DV+ G L L L +G+ ++ Sbjct: 192 MRPSGRVGGDLAGSFEIATGRVAIYSIDVSGHGVASALMTARLAGLLSGVSPDRNFALTG 251 Query: 231 ---LAHQNQRLPELGALLKQVNH-LLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL 286 + ++ + + N +L + + F + + + LV AG + Sbjct: 252 GNCYRCKGRQTWPPDMVASRFNRMMLEELQVDQYFTMAYAEIDLDTGRVELVQAGHPHPV 311 Query: 287 N---TGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 G ++ G+P+G + +A + R + + G Sbjct: 312 VMRADGTIEMLGQGGLPIGLIPDASYERTECRLAPGDRVLLLSDGVTE 359 >UniRef50_C0QFH6 Putative two-component response regulator receiver protein (Phosphoserine phosphatase) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QFH6_DESAH Length = 373 Score = 270 bits (692), Expect = 4e-71, Method: Composition-based stats. Identities = 56/329 (17%), Positives = 115/329 (34%), Gaps = 25/329 (7%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 IL+V+D V ++ S G + A +G A + PDL++ DI MP +G + Sbjct: 8 TILVVDDNLVNLKFMEMTLSKEGYRVITADNGTSAKTIAVAEKPDLILLDIQMPGGDGFE 67 Query: 69 LLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 ++ ++ PV+ ++ ++ K LG D + KP L L V L Sbjct: 68 VIRFLKETPGTCTIPVIFLTNMTDVDSKLKGFDLGAVDYVTKPFHPLEVL-ARVATHLKL 126 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 S+ + + + + E+ P + + + + G Sbjct: 127 SIATNSLVANQ---------ARRLREITEAQNEMLP-LPEDFPRAKFGVYYRALHEAGGD 176 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 DI +S++ ++ D + ++AL LA ++ + +K Sbjct: 177 FYDILNISDHITGYFVADFSGHDIKSSYMTASIKAL--------LAQNSKLVYSPLETMK 228 Query: 247 QVNHLLRQANL-PGQFPLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQISNGVPLG 302 +N +L + + NL ++SAG ++ T ++ +G LG Sbjct: 229 MINDVLVEILSENKYLTACYARLNHATGNLCIISAGHPPVVHVPATRNPEIINMDGDILG 288 Query: 303 TLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 +A ++ + G + Sbjct: 289 MFKDARFGIHRRKLAPGDRFFIYSDGLVE 317 >UniRef50_A8LPF3 Response regulator n=2 Tax=Rhodobacteraceae RepID=A8LPF3_DINSH Length = 422 Score = 270 bits (691), Expect = 5e-71, Method: Composition-based stats. Identities = 65/343 (18%), Positives = 124/343 (36%), Gaps = 21/343 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 Q+L+V+D ++ R +L G A DG E+ D++I D MP ++G Sbjct: 21 QVLVVDDSRLQRRILSMALKKKGYDVFEAEDGNHGFEIFSQNHIDIVISDWMMPGLSGPD 80 Query: 69 LLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 L +R + +++++ +IA+ G +D L KPV + L + A Sbjct: 81 LCRKLRAVESEHYVYIILLTTKSEKDEIAQGFDAGADDFLSKPVHAV-ELMARITAGERV 139 Query: 127 SMFNSRVEEEERLFRD--------WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQL 178 + + L + + A+ + A KL Q L + Sbjct: 140 MRMERELTTKNHLISETLAELKTLYHALDSDLIEAKKLQQSLVRDKTGTFGRADLALMLK 199 Query: 179 VAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQ------EQLA 232 + G ++ +++ ++ Y LDV+ G + L L + +G + E Sbjct: 200 SSGHVGGDLVGFFPINDFEVGLYSLDVSGHGVSSALMTARLAGVLSGSMPGKNIAIEADG 259 Query: 233 HQNQRLPELGALLKQVNHLLR-QANLPGQFPLLVGYYHRELKNLILVSAGLN--ATLNTG 289 + GA+ +N LL + F +++G + + L +V AG L G Sbjct: 260 AGQPVGRDPGAVAADLNRLLLEEMETEHYFTIMLGILNIDTGVLRMVQAGHPHGHLLRNG 319 Query: 290 -EHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + G+P+G L A + + + G Sbjct: 320 AGSDLLGEGGLPIGLLDAADYTSFTATLAPGDRVLLVSDGFTE 362 >UniRef50_D1NYI5 Protein hnr n=5 Tax=Enterobacteriaceae RepID=D1NYI5_9ENTR Length = 338 Score = 270 bits (690), Expect = 6e-71, Method: Composition-based stats. Identities = 125/335 (37%), Positives = 207/335 (61%), Gaps = 2/335 (0%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT--PDLMICDIAMP 62 + ++ILIVEDE++F ++L + SL +A +G AL+L+ PD+++CD+ MP Sbjct: 1 MKNRKILIVEDEKIFCTILREYLESLETEVYIADNGALALDLITEKHLTPDVILCDLNMP 60 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 MNG + + R PV+VISAT + + + RLG +D LLKP+K+L+ ++ + + Sbjct: 61 VMNGETFMAELVGRNIHIPVIVISATTDFTQLDRMFRLGAKDALLKPIKNLDEVKMTIHS 120 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 LYP +++ E + + + + +L++LQPPV Q+I+ R+NYRQL A+ Sbjct: 121 ALYPEKYDTESVMEHEIQNMSNILHSDKLDMLAILKQLQPPVSQIINGYRINYRQLNEAN 180 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 + GL+LDIAA+SE + FYC+D R+ G++AA L+R +FN LL+ ++H +++LP + Sbjct: 181 RFGLLLDIAAISEEQVGFYCIDTERSPQEGIMAAFLIRVVFNDLLKSAVSHPDKKLPNID 240 Query: 243 ALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVPLG 302 ++ Q+NHLL ++ GQFPLL+GY++ + KN+IL SAGL A + T H + +PLG Sbjct: 241 RIIHQINHLLEESGFSGQFPLLLGYFNTKTKNVILASAGLEAEITTENHHYHLDRNIPLG 300 Query: 303 TLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 TL + + N+L W+C I R++LM + + Sbjct: 301 TLKSYHSNRLDFHGAQWKCLIRNNDQRIKLMFNPD 335 >UniRef50_A0KWS5 Response regulator receiver modulated serine phosphatase n=1 Tax=Shewanella sp. ANA-3 RepID=A0KWS5_SHESA Length = 411 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 67/334 (20%), Positives = 126/334 (37%), Gaps = 19/334 (5%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+VED R + G ++G AL+ L +++ D MP M+G++L Sbjct: 16 VLVVEDTDCERFYITHLLRQFGWLVESRSNGKAALDYLQQNEVHILVSDWRMPEMSGIEL 75 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 + ++N V++++A ADI + G +D + KP L+ + A + Sbjct: 76 CQIVKNNHLPPFVILLTANNQTADIVLGIEAGADDFICKPFLP-ELLKVRMLAAMRIVQL 134 Query: 130 NSRVEEEERLFRD--------WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 + +L + + + +AAK+ +EL P + + ++++ A+ Sbjct: 135 QHNLSRNIQLLQQGLAKESALLSTIKQDLFSAAKVQRELLPRSKTLPRDWQLHHEFQPAS 194 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPEL 241 G + L ++ L FY +D G L ++ L + + Sbjct: 195 YLAGDLYQCFDLGDDQLGFYLIDAAGHGVAAALQSVSLAQRL------SMERTDWCGLSP 248 Query: 242 GALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLNTGEHQ---VQISN 297 ++ QVN L + G+F LL+G + L L SAG A L E + + Sbjct: 249 QEIVNQVNRELSDPDNTGRFVTLLLGKINTLTGELRLCSAGHPAPLLLTETSCEPLPLDT 308 Query: 298 GVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 +PLG G + + G Sbjct: 309 ELPLGIHGAVQYQDQLVTLLPGSRLLLFSDGTYE 342 >UniRef50_B0TN95 Response regulator receiver modulated serine phosphatase n=2 Tax=Shewanella RepID=B0TN95_SHEHH Length = 411 Score = 267 bits (683), Expect = 4e-70, Method: Composition-based stats. Identities = 67/351 (19%), Positives = 137/351 (39%), Gaps = 27/351 (7%) Query: 1 MTQPLV-----GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLM 55 MT PL +I++VED R LL + S+G T ++ A++ L D++ Sbjct: 1 MTMPLSLQHIRQYKIILVEDSDSERCLLLNLLDSMGFTAQGFSNAQGAIKHLQNEQVDMV 60 Query: 56 ICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNR 115 I D MP+++G++L + I++ ++++ A + + + G +D + KP Sbjct: 61 ITDWMMPQISGIELCKTIKSMPCSPYTILLTGNNQNAHMIEGIESGADDFIAKPFHS-GV 119 Query: 116 LREMVFACLYPSMFNSRVEEEERLFRD--------WDAMVDNPAAAAKLLQELQPPVQQV 167 L+ + A L ++ + + + + + AA+L + L P + Sbjct: 120 LKVRILAGLRIIEMQQKLASHNKTLNQMLVKEQDYLNCLRQDLSLAAQLQRALLPKNSDL 179 Query: 168 ISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL 227 RV A D G + + E + FY LDV+ G ++L L + L Sbjct: 180 TEGWRVTTEFKPAQDLAGDLFQCFNIDEQHIGFYLLDVSGHGTAA---SMLSFTLAHHLS 236 Query: 228 QEQLAHQNQRLPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL 286 Q Q+ +L + ++N G+F LL+G + + + L++AG + + Sbjct: 237 SHQKVWQS---LDLALITNKLNREFDDPEQCGRFATLLIGIANTKTGAVELINAGHPSPI 293 Query: 287 NTGE--HQVQIS----NGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + + +P+G + + + + + G Sbjct: 294 IVSPQGAKFVDDSYAESQLPIGIDKQHHYQSQHFTMEKEEQLLLYSDGIYE 344 >UniRef50_C4L3A8 Response regulator receiver modulated serine phosphatase n=2 Tax=Exiguobacterium RepID=C4L3A8_EXISA Length = 370 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 65/334 (19%), Positives = 119/334 (35%), Gaps = 28/334 (8%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL----GGFTPDLMICDIAMPRMN 65 ILIV+DE V +L+ TV + G +AL+LL DL++ D+ MP ++ Sbjct: 3 ILIVDDEPVNTLVLEQLLHQHDYETVSVSSGEEALDLLMAPQAASLYDLVLLDVEMPGIS 62 Query: 66 GLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G++ + IR D + PV+++S IA+ L D KP+K + L + + Sbjct: 63 GIETCKRIRQMADFEELPVIMVSGRTEEKQIAEGLDAEASDYTTKPIK-ITELLARIRSA 121 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 L + E + + A K+ Q P V L + Sbjct: 122 LRYKAAVDERKIYEARLQY------DLDLAQKIQQSALTPPISN-EEIDVRALYLPSKKL 174 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGA 243 G + ++ + DV G + L + +R++ GL+ + Sbjct: 175 AGDMYAWFQVAPDRYGVIIFDVMGHGVSSALITMGIRSILPGLV--------GNVQYPVD 226 Query: 244 LLKQVNHL----LRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGE--HQVQISN 297 ++ ++N ++ F + Y + + V+AG + T E + + Sbjct: 227 VMTELNRQMTFLFSGDDMHSYFTAVYCYIDTTKRRIEYVNAGHPPVIVTSEEGNCRLETT 286 Query: 298 GVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 GVP+G T G + Sbjct: 287 GVPVGMFEEPNYESKEIDITPNMMLHMYTDGLME 320 >UniRef50_Q1NTC5 Response regulator receiver n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NTC5_9DELT Length = 409 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 73/350 (20%), Positives = 130/350 (37%), Gaps = 28/350 (8%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT-PDLMICDI 59 M + IL+V+D + ++ + + A G ALEL G PDL++ DI Sbjct: 7 MKEQSARATILVVDDAPINIMIIKGALKNE-WQLLTAESGGQALELARGTPRPDLILLDI 65 Query: 60 AMPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP M+G ++ ++ PV+ ++A + + L+LG D + KP+K LR Sbjct: 66 MMPGMDGHEVCRQLKADPETRDIPVIFVTAMGDAVSEQQGLQLGAIDYMSKPIKP-EILR 124 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVI--------- 168 V + ++ S +EE R + AAA + + L PP + + Sbjct: 125 VRVRNHIKLKLYQSALEEARR------RAAQDLEAAAVIQRTLLPPAPEALRALALASER 178 Query: 169 -SHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL 227 + ++ G ++ I ++ FY LDVT G + + L Sbjct: 179 EPGAQFHWLFSPCEQVGGDLVSITPWDQDHTLFYLLDVTGHGPQAAMITFAVAQF---LQ 235 Query: 228 QEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN 287 E A++ + + F L+ G++H + L +AG L Sbjct: 236 PSGHNRHTLPFLEPVAMIAALEKVFPMERFESFFTLIYGHFHHPSRTLTFCNAGQPHPLL 295 Query: 288 TGEHQ----VQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 Q + NG +G N + Q ++ T G L ++ Sbjct: 296 LEGEQPPRPLNKGNGTLVGMDMNRDIVTEQLVLTDRQRVLFYTDGLLDIL 345 >UniRef50_B4RXD7 Putative response regulator n=3 Tax=Alteromonas macleodii RepID=B4RXD7_ALTMD Length = 568 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 73/345 (21%), Positives = 133/345 (38%), Gaps = 23/345 (6%) Query: 1 MTQP---LVGKQILIVEDEQVFRSLLDSWFSSLGA-TTVLAADGVDALELLGGFTPDLMI 56 MT + +ILIV+DE + R+LL + S G + A +G +A++ PDL++ Sbjct: 1 MTSSNGEVTAVKILIVDDEAINRTLLTNMLYSAGYKHCIEAVNGEEAIQHFIEEQPDLIL 60 Query: 57 CDIAMPRMNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLN 114 D+ MP ++G + IR +G P+L I+A E+ + + L +G D KP D + Sbjct: 61 LDVVMPGLSGFDVAVQIRQLAKGPYLPILFITALEDNESLVRCLEVGGNDFATKPF-DRH 119 Query: 115 RLREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVN 174 L + A L + VE++ + R ++ V A + + + + + Sbjct: 120 ILTAKIRAHLKIRALSEHVEQQNQRLRLFNQRVAREHAIVEHIFSHAIVNRPEVLS-HFD 178 Query: 175 YRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQ 234 A G + A + F D T G + AL + F L + Sbjct: 179 CFLKPAETFNGDLFLCEASPSGGVYFVVGDFTGHGLASAIGALPVTQAFQELSHQG---- 234 Query: 235 NQRLPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL----NTG 289 + ++ ++N +L F +VG + E + L G+ A + Sbjct: 235 ----VSIAEIICELNRILITFLPSDMFMAAVVGEINAEGNRVNLWQGGMPAVIIPAKTDM 290 Query: 290 EHQVQISNGVPLGTLGNAYLNQLS--QRCDAWQCQIWGTGGRLRL 332 + S + LG + LN R + I + G + + Sbjct: 291 SLRTITSRHMALGIVDEHELNTDCDAIRLGPNEQLIICSDGLIEI 335 >UniRef50_A5UZS1 Response regulator receiver protein n=3 Tax=Bacteria RepID=A5UZS1_ROSS1 Length = 391 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 75/341 (21%), Positives = 131/341 (38%), Gaps = 25/341 (7%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 ++IL+V+D+ LL + ++ G AA G +ALELL D++ DI++P ++GL Sbjct: 16 RRILVVDDDPDINRLLRARLTARGYEVSTAASGEEALELLSETPADIVFLDISLPGISGL 75 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 LE +R RG T V++ +A + +ALR G D L KP + L + Sbjct: 76 HTLEEVRRRGLDTAVIMTTAFGSEQIAVEALRQGANDYLRKPFESDEF-----RRVLERT 130 Query: 128 MFNSRVEEEERLFR-----DWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 + +E + R+ R + A AA++ L P +S ++ + A D Sbjct: 131 VQRLELERQNRVLRQHLEAHHRRLKSELARAAEVQARLLPQTAPALSGFQLAAECIPARD 190 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 G D + L+F+ DV G + L +RA+ +++ Sbjct: 191 VGGDFYDWQQPQPHLLSFWLCDVMGKGLDAALLMATVRAVMRAVVRHS---------PPA 241 Query: 243 ALLKQVNHLLRQANL--PGQFPLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQIS- 296 ++ V H L + L + L + AG G + Sbjct: 242 EAMRYVTHALIDDLVQSGRFVTLFLAQLDTRSGRLASIDAGHGLAFVRRADGTVETLDDR 301 Query: 297 NGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 G+PLG L + +Q I + G + + + Sbjct: 302 RGLPLGVLPDEQYDQRETVLAPGDALIVYSDGLVDARVDLD 342 >UniRef50_Q1N2W0 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=2 Tax=Gammaproteobacteria RepID=Q1N2W0_9GAMM Length = 569 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 62/337 (18%), Positives = 132/337 (39%), Gaps = 21/337 (6%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + +ILI +D + R +L + +G + A +G +A++ PD+++ D+ MP M Sbjct: 1 MEPLKILIADDNKTDRMILSAIVKKMGHDVLQAENGAEAVDQFQSHHPDIILLDVMMPVM 60 Query: 65 NGLKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 +G + I+ + + P++ +++ ++ D+A L G +D L KP K + L+ + A Sbjct: 61 DGQQAAREIKMQAGEDMVPIIFLTSLQDAHDLAACLDSGGDDFLTKPYKQI-ILQAKINA 119 Query: 123 CLYPSMFNSRVEEEERLFRDWD-AMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 N+ ++ + + R+ + ++ A + + + + + Y + Sbjct: 120 FSRMRRMNTMLQNQRDVIRENNEHLMHEQQVAKAVYDNVAHSGCLDLPNLK--YMISPFS 177 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPEL 241 G VL A L D T G + A+ L +F G+ + + Sbjct: 178 VFNGDVLLAARKPSGSLHILLGDFTGHGLPAAIGAMPLAEIFYGMTAKGF--------TM 229 Query: 242 GALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL----NTGEHQVQIS 296 +L+++N L+ G F + ++L + GL + + S Sbjct: 230 TDILREINIKLKTILPIGYFCCACMATVRFRSQHLEIWMGGLPDYYFLHSKDRKIETINS 289 Query: 297 NGVPLGTLGNAYL--NQLSQRCDAWQCQIWGTGGRLR 331 N +PLG L + + + + G L Sbjct: 290 NHLPLGVLSSQAFKTDTHKISYEVGDKFFMWSDGILE 326 >UniRef50_A1U0P5 Response regulator receiver protein n=4 Tax=Gammaproteobacteria RepID=A1U0P5_MARAV Length = 402 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 73/345 (21%), Positives = 135/345 (39%), Gaps = 17/345 (4%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 MT ++ILI++ ++ R+ L + + G AA A L PD++ D+ Sbjct: 1 MTS--RTERILIIDADEQARADLSRYLEARGFYVTGAAGVNAARGLFDDNIPDVIFADLP 58 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD-------- 112 + L + TP++ +++++ AD+ +A+R G DV+LKP D Sbjct: 59 PEAIR--DLSRRLDETESFTPIVACTSSQSSADVVQAMRAGAADVVLKPCNDDRNALDDV 116 Query: 113 LNRLREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQ-ELQPPVQQVISHC 171 + +L + V ++ +EE R R+ A + A + +Q ++ P Q +S Sbjct: 117 IGKLFDRVRVNRLNQLYRQELEEANRDLRNGIAELRADQNAGRKVQLKMLPDHQLTLSGL 176 Query: 172 RVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL 231 V+Y + G LD +SE+ + Y DV+ G + +LLR L N L + Sbjct: 177 SVDYLIKPSLYLSGDFLDYFRISEDKVLVYIADVSGHGASSAFVTVLLRNLTNRLQRNLR 236 Query: 232 AHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNAT----LN 287 + + L+++N L L + VG + L Sbjct: 237 RQSSDDILHPERFLERINSELLDTGLGKHVTVFVGIISTTERTLSYAVGAHFPMPILSFE 296 Query: 288 TGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 GE + +G+P+G + D + + G L + Sbjct: 297 DGETRFLEGSGLPVGLFETPEWELYQVKLDRPFRLLLFSDGLLEV 341 >UniRef50_A1AZB3 Response regulator receiver protein n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1AZB3_PARDP Length = 423 Score = 263 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 69/349 (19%), Positives = 122/349 (34%), Gaps = 20/349 (5%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 + P + +L+V+D + R L G V AA G +A+ + PD++I D M Sbjct: 11 SVPHGWRLVLLVDDSRAQRRTLAVQLIRAGYHVVEAASGDEAMRICLERRPDIVISDWMM 70 Query: 62 PRMNGLKLLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 P +GL+ R +++++ + DIA+ LR G ++ L KPV L Sbjct: 71 PGQSGLEFCRRFREMQSDRYGYFILLTSRNDKKDIAEGLRAGADEFLTKPVSG-AELLAR 129 Query: 120 VFACLYPSMFNSRVEEEE--------RLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHC 171 + A + RL A+ + A +L Q L Sbjct: 130 LSASERILRMEESLRSANARLNSTLTRLRETQAAIDRDLREAQRLQQGLVRERHGRYGDF 189 Query: 172 RVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL 231 ++ A G ++ ++ + + LDV G L L AL +G + + Sbjct: 190 DLSLLMRPAGHIGGDLVGFFPINARRVGLFALDVAGHGVASALLCARLAALLSGAADQNI 249 Query: 232 AHQNQRL-----PELGALLKQVNHLLRQAN-LPGQFPLLVGYYHRELKNLILVSAGLNAT 285 A + L +L +N L+ + F ++ L LV AG Sbjct: 250 ALRITELGLCDARPPAEILHHLNTLMIEELRTESYFTMVYADLDFLTGALRLVQAGHPHP 309 Query: 286 L---NTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + G + G+P+G +A ++ D + G Sbjct: 310 VLQRADGRIESIGRGGLPVGVFSHAAYEEVQLVLDPGDRLFISSDGLSE 358 >UniRef50_C0GPF4 Response regulator receiver modulated serine phosphatase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GPF4_9DELT Length = 381 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 65/335 (19%), Positives = 118/335 (35%), Gaps = 27/335 (8%) Query: 3 QPLVGKQ--ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALEL-LGGFTPDLMICDI 59 Q ++ K+ IL+V+D + +L S A G AL++ G PDL++ DI Sbjct: 2 QYMMQKKYKILVVDDSPLNIRILSSILKDD-YRVQTALHGDKALQIIFGDDPPDLILLDI 60 Query: 60 AMPRMNGLKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP ++G ++ I+ PV+ ++ ++ D A L LG D + KP ++ Sbjct: 61 MMPGIDGYEVCRRIKADPGTAGIPVIFVTGRSDVEDEAYGLSLGAVDYITKPFH-FPIIK 119 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 V L ++ + + A + L + P + Sbjct: 120 ARVKNHLEL------LQAKRSAQEAHSRLSKELQAMSDLQTSILPSTEYHSQGLYARGFY 173 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 + G D L + L DV+ G ++R +F+ ++ Sbjct: 174 QPSGLAGGDYFDYLPLGHDGLRCVIADVSGHGARAAFLMSMVRTVFHF---------DEA 224 Query: 238 LPELGALLKQVNHLLRQA--NLPGQFPLLVGYYHRELKNLILVSAGL-NATLNTGEH-QV 293 + L LL+ +N L Q ++ L+ L ++AG A L G+ Sbjct: 225 VLPLPHLLEALNSQLMQTVGDMGDFVTLMAVDIDPLKNRLEYINAGHCPAFLRDGQSLHE 284 Query: 294 QISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 LG Y ++ + W+ T G Sbjct: 285 IEPTAALLGFHQEKYKSRFLECGRDWE-LFMYTDG 318 >UniRef50_A0LDM2 Response regulator receiver protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LDM2_MAGSM Length = 564 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 62/336 (18%), Positives = 123/336 (36%), Gaps = 24/336 (7%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +ILIV+D+++ ++L G A +G +EL PDL++ DI MP MNG Sbjct: 1 MKILIVDDDRINSTILTRLLEKDGHKVFTAPNGQRGVELFSDERPDLVLMDIRMPLMNGY 60 Query: 68 KLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 + I++ P++ ++A + +AK + G +D L KP L+ + A Sbjct: 61 EAARRIKSLSPNRFVPIIFLTAVTDDEGLAKCIDAGGDDFLTKPFNR-TILQAKIGAMER 119 Query: 126 PSMFNSRVEEEERLF-RDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 + + E++ L R + L ++ + + C ++ + Sbjct: 120 IGQLHGVLREQKELLERHQQTIRQELEVGKHLFSKIVQAGNLLDAPCLQHWT-APMSLFN 178 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 G +L + L D T G + + AL + +F GL + + L Sbjct: 179 GDLLMASYNPAGGLHIMLGDFTGHGLSAAVGALPISEIFYGLTAQGF--------SISDL 230 Query: 245 LKQVNHLLRQANLPGQFP-LLVGYYHRELKNLILVSAGLNATL----NTGEHQVQISNGV 299 + ++N L + F + ++L++ + GL L + + S + Sbjct: 231 VDEMNAKLTEVLPARMFCAACLIEIDPRQQSLLIWNGGLPDILIADASGSIVRRVRSTHL 290 Query: 300 PLGT----LGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 PLG + + + + G Sbjct: 291 PLGVTHFTAEDRSVEMVEIL--PDYRVYLYSDGLTE 324 >UniRef50_P74139 Regulatory components of sensory transduction system n=1 Tax=Synechocystis sp. PCC 6803 RepID=P74139_SYNY3 Length = 603 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 62/364 (17%), Positives = 110/364 (30%), Gaps = 33/364 (9%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 ++ L+ +IL+V+D L + G DAL LL DL++ D+ M Sbjct: 184 SRELLKGKILVVDDNPSNLDLFFQHLTRKGHAVTTCLSAKDALGLLQSQNYDLILLDLLM 243 Query: 62 PRMNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 P NG + LE+++ PV+++SA + I + + +G ED L KP + L+ Sbjct: 244 PETNGDQFLEYLKTSVEFQHIPVIIVSALDEFESIIRCIEMGAEDFLPKPFDPV-LLKAR 302 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMV-DNPAAAAKLLQELQPPVQQVISHCRVNYRQL 178 + + L + + + M+ ++ + P S + Sbjct: 303 IGSSLEKKRLRDQEKLYTQQVEGLSEMMAKELEKGRQMQKNFLPAHLLTRSGWEFSAYFS 362 Query: 179 VAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQ---- 234 A G D+ L + L DV G L L R+L + Sbjct: 363 PAQQLAGDFYDLFELPGDRLGIVVADVCDKGVGAALFMGLFRSLIRIFSGQAALDGLINP 422 Query: 235 -------------------NQRLPELGALLKQVNH--LLRQANLPGQFPLLVGYYHRELK 273 N E +K +N+ + + G Sbjct: 423 SFNLPSGQGLLDVNLDNLLNNINFEPLESIKLINNYVAINHGEASMFATIFFGILEPSSG 482 Query: 274 NLILVSAGLNATLNTGEHQVQI----SNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGR 329 L ++ G + S G +G L + + T G Sbjct: 483 KLSYINGGHEPVFIVDSNHQLKTKLTSTGPAVGMLPDLQFKTAEIILQPGDLLLSYTDGV 542 Query: 330 LRLM 333 Sbjct: 543 TEAK 546 >UniRef50_C7LV69 Response regulator receiver protein n=2 Tax=Desulfovibrionales RepID=C7LV69_DESBD Length = 377 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 108/328 (32%), Gaps = 25/328 (7%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILIV+DE + LLD G T+ G +A L +PDL++ D+ MP +G Sbjct: 12 ILIVDDEPLNIRLLDIVLKKNGYRTLSCTSGPEARALAAEHSPDLILLDVLMPDEDGYAT 71 Query: 70 LEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 ++ + P++ ISA + + + L +G D + KP + L V L Sbjct: 72 CALLKQQSQTSDIPIIFISALTDTSSKVRGLEVGGVDFISKPFEKAEVL-ARVKVHLKLR 130 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLV 187 + E + A Q L + + R + G Sbjct: 131 FTYRALIEAQ---------AQRLAQVQDAQQALLVLPAE-LPEAGFAVRYEPVLEAGGDF 180 Query: 188 LDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQ 247 D+ + + DV+ L+AL L+ + L Sbjct: 181 YDVLHVGGTTFDYVVADVSGHDLGTSYITSALKAL--------LSQNCNLVTSPAESLTM 232 Query: 248 VNHLLRQANLPG-QFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGVPLGT 303 +N +L + G +RE + L ++AG + + G ++ +G LG Sbjct: 233 INSVLCRILTGGTHITAGFARLNREQRTLRYINAGHPSPVLVRAGGGIEIPQPSGDILGV 292 Query: 304 LGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + L T G + Sbjct: 293 FDAVWFEALELSVQPGDRLFMYTDGLIE 320 >UniRef50_D2L926 Response regulator receiver modulated serine phosphatase n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L926_9DELT Length = 383 Score = 260 bits (666), Expect = 4e-68, Method: Composition-based stats. Identities = 67/345 (19%), Positives = 112/345 (32%), Gaps = 33/345 (9%) Query: 1 MTQPLVGK--------QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP 52 M P G+ +ILI++DE + L G + AA G E+ P Sbjct: 1 MEHPKSGREADKARPPRILIIDDETINVETLAWMLKEAGFVPLRAASGQKGREIAAREQP 60 Query: 53 DLMICDIAMPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPV 110 DL+I DI MP +G + P++ IS +++ + K LR+G D + KP Sbjct: 61 DLVILDIMMPGESGFDTCTRLTADPATTDIPIIFISGLDDVENKVKGLRIGAVDYVTKPF 120 Query: 111 KDLNRLREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISH 170 + V + + E+ A Q + + Sbjct: 121 AR-EEVLARVKIHIRLRRGLKALLAEQ---------AAKLAQIRDAQQSILVAPGDLPEG 170 Query: 171 CRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ 230 R R + A + G D+ SE + ++ D++ L+AL Sbjct: 171 -RFAVRYVPALEAGGDFYDVFPWSEAVMGYFVADISGHDLGASFVTSSLKALLR------ 223 Query: 231 LAHQNQRLPELGALLKQVNHLLRQANLPG-QFPLLVGYYHRELKNLILVSAGLNATL--- 286 L LK +N +L G + +R L +VS G A + Sbjct: 224 --QNTGPLFTPVETLKNINSVLSTLLRDGKHLTASLLCLNRARTRLTVVSGGHPAPILVG 281 Query: 287 NTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 GE + ++G LG + + T G + Sbjct: 282 ADGEVTLLAADGDVLGVFEAVQFGLIERTVAPGDRIFLYTDGLIE 326 >UniRef50_B8CL69 Serine phosphatase RsbU, regulator of sigma subunit n=1 Tax=Shewanella piezotolerans WP3 RepID=B8CL69_SHEPW Length = 419 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 65/339 (19%), Positives = 132/339 (38%), Gaps = 24/339 (7%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 I++VED R LL + +++G +V ++ A+E L DL+I D MP M+G++L Sbjct: 16 IMLVEDCDSERCLLSALVTAMGHHSVDFSNAESAIEYLKAHHVDLVITDWMMPGMSGIEL 75 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 + ++ D ++++ I + + G +D + KP L+ + A + Sbjct: 76 CKILKQSCDNPYTILLTGNSENTHIVEGINSGADDFVAKPFNS-AVLKARIHAGVRIIEM 134 Query: 130 NSRVEEEERLF--------RDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 S++ ++ + + + + + A AA+L Q L P Q+ +V A Sbjct: 135 QSQLSQKNKSLNQMLLKEQQYLNVVKQDLALAAQLQQALLPNNCQLSQQWQVTCEFKPAH 194 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPEL 241 D G + + + + FY LDV+ G + + L + ++ Sbjct: 195 DLAGDIFQCFNIDDQHIGFYLLDVSGHGTAASMQSFTLAQSLAN------NQDAWQALDV 248 Query: 242 GALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLNTGEHQ-------- 292 L+ +N G+F +++G + + LV+AG A + Sbjct: 249 CQLINTLNREFDDPQNSGRFATMIIGIANAVTGKVELVNAGHPAPIVISPQHAYFADQLQ 308 Query: 293 VQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + I+ +PLG N + + + + G Sbjct: 309 LNIAAQLPLGIRKNYQYSSSQLFLSQHEHLLLYSDGIYE 347 >UniRef50_Q07SD0 Response regulator receiver modulated serine phosphatase n=3 Tax=Bradyrhizobiaceae RepID=Q07SD0_RHOP5 Length = 441 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 76/341 (22%), Positives = 127/341 (37%), Gaps = 28/341 (8%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGA-TTVLAADGVDALELLGGFTPDLMICDIA 60 ++ + +IL+V+D+ + LL + A G+ ALE++ F PDLM+ D+ Sbjct: 20 SRSIFESRILVVDDDPMACRLLATILKKHQFANVRAAEGGISALEMIDSFRPDLMLLDMQ 79 Query: 61 MPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP ++GL++ E +R R D P+LV +AT + ++ G D L KP+ L Sbjct: 80 MPDLSGLEVCERVRARPDLVDMPILVQTATVDRKEMGMLFMAGASDFLSKPINP-AELMS 138 Query: 119 MVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVI-----SHCRV 173 V L + + D AA ++ EL P Q + R+ Sbjct: 139 RVAVHLERRTLLRELRD------YRDRTSQELDAAQRMQAELLPTPCQQQQLAEDAGLRI 192 Query: 174 NYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAH 233 +++ G + + L+++ + D T G L L AL + Sbjct: 193 GSFAQPSSEIGGDLWGMLPLNQDSFGIFVADFTGHGVTAALNTFRLHALIHEYRSLH--- 249 Query: 234 QNQRLPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLNT---- 288 + AL+ +N L + PGQF L L VSAG + + Sbjct: 250 -----NDPTALVSMLNERLCRLLTPGQFATFLYLIVDHRADRLRFVSAGAPPPIVSEGLR 304 Query: 289 GEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGR 329 G + + GVPLG + + G Sbjct: 305 GPSTIIEAAGVPLGVARGVAYQLCETSFVPDSMLLLYSDGL 345 >UniRef50_A4XW58 Response regulator receiver protein n=3 Tax=Gammaproteobacteria RepID=A4XW58_PSEMY Length = 562 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 68/332 (20%), Positives = 124/332 (37%), Gaps = 21/332 (6%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILIVED R LL + S G + A +G++A+ L P L++ D MP M+G + Sbjct: 7 ILIVEDNAADRMLLSTIVSRQGHRVLTAGNGLEAVALFEQERPHLVLMDALMPVMDGFEA 66 Query: 70 LEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 I+ + + P++ +++ + + L G +D L KP + L + A Sbjct: 67 ARRIKQQAGEALVPIIFLTSLTENEALVRCLEAGGDDFLAKPYNRV-ILEAKIGAMDRLR 125 Query: 128 MFNS-RVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 + +E+ + + R + ++ A + ++ + R Y Q A G Sbjct: 126 RLQATVLEQRDLIARHNEHLLREQRVAKAVFDKVAHSGCLDAPNIR--YLQSPYALFNGD 183 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 +L A + D T G + A+ L +F G+ + A L +L+ Sbjct: 184 LLLAAYTPSGGMHVMLGDFTGHGLPAAIGAMPLAEVFYGMTSKGHA--------LAEILR 235 Query: 247 QVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNATL----NTGEHQVQISNGVPL 301 ++N L++ G F + L + + GL + Q +S +PL Sbjct: 236 EINAKLKRILPVGVFCCATLLNISSQRGLLEVWNGGLPDGYLLHGDGRPRQALVSRHLPL 295 Query: 302 GTLGNAYLNQLS--QRCDAWQCQIWGTGGRLR 331 G L A + + G L Sbjct: 296 GILEPAAFSDRCEVYPLAEGDRIFLLSDGVLE 327 >UniRef50_D0MFG2 Response regulator receiver modulated serine phosphatase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFG2_RHOM4 Length = 371 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 71/334 (21%), Positives = 121/334 (36%), Gaps = 27/334 (8%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + IL+VEDE R LL+ S AA+G +AL+L+ PDL+I DI MP+M Sbjct: 1 MARYSILVVEDEHTLRRLLEYRLSKY-YRVRSAANGEEALQLVLEEIPDLIISDIMMPKM 59 Query: 65 NGLKLLEHI--RNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 +G L + + R P + ++A + + +R+GV+D + KP D+++L + Sbjct: 60 DGFALQQALQNRKETRAIPFIFLTAKADEHSRMRGMRMGVDDYITKPF-DIDQLLARIER 118 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 L + + + ++L P + R+ + Sbjct: 119 LLERTKYFQS--------------QLDARIGQDFSKKLMPKQLPSVRGYRLYFHNSPKEY 164 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 G D DV G A F ++ L Q Sbjct: 165 GGGDFFDWTQHPSGSFFITIGDVMGKGLQAKFYAFS----FLSYIRGTLYAMLQTSQSPA 220 Query: 243 ALLKQVNHLLRQANL--PGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISN 297 LL++VNH+L Q + LL+ + + +AG + + +V + Sbjct: 221 ELLRRVNHVLMQDTVMEETFASLLILRWDPTTHEVTYANAGHCRPILVKDDRTAEVVEYS 280 Query: 298 GVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + LG NA + A + T G L Sbjct: 281 DLILGLDPNATFQDATITIPAGGGLLLYTDGLLE 314 >UniRef50_A0K1U5 Response regulator receiver protein n=3 Tax=Arthrobacter RepID=A0K1U5_ARTS2 Length = 378 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 59/335 (17%), Positives = 111/335 (33%), Gaps = 22/335 (6%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 MT ++ L++ED+ R LL + G + G +EL+ +L+ D+ Sbjct: 13 MTDEPEVRRALVIEDDDDIRGLLVHILTKQGFQVSAESTGRAGVELMQREGAELVTLDLN 72 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 +P ++G+++ +R +L+I+A D L G +D L KP L + Sbjct: 73 LPDIDGVQVCRELRK-FSDAYILMITARGEELDRLTGLDTGADDYLTKPFSP-RELASRI 130 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 A ++ E R D A ++ + L P + + + Sbjct: 131 TALFRRPRASAVHEAAAR---------DELRRAVEVQRSLLPAEGLSLDGFDIAGSFRPS 181 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 + G D S+ L D G L A +RA+ + ++ Sbjct: 182 RNVGGDFFDWYP-SDGGLQMTLADAMGKGMGAALIAATVRAVMRSVA--HRTPLSEAFSS 238 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQISN 297 G +L+ L L + AG L+ G +++ Sbjct: 239 AGRILEA-----DLEQSASFVTLFHARLDAATGILQYLDAGHGLALHIRADGSCSRLLTS 293 Query: 298 GVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 G P+G + + + C + G L + Sbjct: 294 GPPVGAWPDQEWDAHQVSLEPGDCLAVVSDGLLDV 328 >UniRef50_A4U5H4 Two-component response regulator n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U5H4_9PROT Length = 644 Score = 257 bits (658), Expect = 3e-67, Method: Composition-based stats. Identities = 72/342 (21%), Positives = 120/342 (35%), Gaps = 26/342 (7%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGA-TTVLAADGVDALELLGGFTPDLMICDIA 60 + +++V+DE++ R+LL G T V A DG+D L L PDL+I DI Sbjct: 14 SPDWSWATVMVVDDEEINRALLAGIARRDGIGTIVQAVDGLDCLHKLETVQPDLIILDIV 73 Query: 61 MPRMNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP ++G IR P+LV +A D+ + G DV++KP++ L Sbjct: 74 MPNLDGFATCARIRAMPEWSDIPILVQTALTTPQDVLACFQAGASDVVVKPIRP-AELTA 132 Query: 119 MVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPP-----VQQVISHCRV 173 + L + + + + A ++ + L P + + Sbjct: 133 RLRVHLENRRMLRTLRDANQ------RIHKEMLGAREMQRTLFPSATALDQLRAEHGLCI 186 Query: 174 NYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAH 233 + G + + LS+ +A D + G L L A ++ Sbjct: 187 EGKVEPLDGVGGDIWGLHPLSDTLVAVMVADFSGHGLMAALNTFWLHAF--------VSK 238 Query: 234 QNQRLPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL--NTGE 290 Q + + LK +N LR + G F G E L AG + E Sbjct: 239 QAAAMRQPAEFLKLLNGALRANLMRGHFATFFFGLIDLERDELHWAGAGAPKPILVLNDE 298 Query: 291 HQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 + G+PLG A S C + + G + Sbjct: 299 FHELDTTGLPLGLTDRAIYGSHSVAFPPGACLLVFSDGLTDI 340 >UniRef50_A3WN77 Response regulator of sigma subunit, serine phosphatase (CheY-RsbU) n=2 Tax=Idiomarina RepID=A3WN77_9GAMM Length = 560 Score = 257 bits (656), Expect = 5e-67, Method: Composition-based stats. Identities = 59/334 (17%), Positives = 117/334 (35%), Gaps = 21/334 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +IL+V+D++ + +L +S G V A++G +AL L P L++ D+ MP M+G Sbjct: 1 MKILVVDDQKANQIMLTGLLTSFGHEVVCASNGREALGLFEQVQPQLILLDVMMPEMDGF 60 Query: 68 KLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 + ++ P++ ++A ++ + + L++G +D L P + + L+ V A Sbjct: 61 ETAPRLKAMSGNVHLPIIFLTALDSQDTLLECLKVGGDDFLSIPFEPV-VLQAKVNAHAR 119 Query: 126 PSMFNSRVEEEERLF-RDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 + + E+ R M +L+ Q S + +D Sbjct: 120 VRELSYSIVEKNRALAWHTARMEREQNVVQHMLENALADNQLNYSFVK--SYLRATSDFN 177 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 G V + + D T G AL + F + + L +G + Sbjct: 178 GDVCLGRKGPFGNYYIFLGDFTGHGLAPATGALPVAQAFFSMAERGL--------SVGDM 229 Query: 245 LKQVNHLLRQANLPGQFP-LLVGYYHRELKNLILVSAGLNATL----NTGEHQVQISNGV 299 + N+ L + F +V + + G+ L + Sbjct: 230 ATEFNNRLYKVLPDDMFCAAIVVEMSANGDRISCWNGGMPDALLLDAQGRLAHRIKPQHM 289 Query: 300 PLGTLGNAYLNQ--LSQRCDAWQCQIWGTGGRLR 331 LG L + N Q + + G + Sbjct: 290 ALGILSRSEFNSQLEHYFLSPGQRLVMFSDGVVE 323 >UniRef50_C4XQQ3 Response regulator receiver protein n=1 Tax=Desulfovibrio magneticus RS-1 RepID=C4XQQ3_DESMR Length = 382 Score = 257 bits (656), Expect = 6e-67, Method: Composition-based stats. Identities = 66/334 (19%), Positives = 109/334 (32%), Gaps = 25/334 (7%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 +ILIV+DE + L G T + AA G + P+L+I DI MP Sbjct: 11 DARPPRILIVDDETINVETLAWMLKEAGFTPLRAASGPAGRRMAADEQPELIILDIMMPG 70 Query: 64 MNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVF 121 +G + + P++ IS +++ + + L+LG D + KP + V Sbjct: 71 ESGFETCAKLTADPATTDIPIIFISGLDDVENKVRGLKLGAVDYITKPFAR-EEVLARVK 129 Query: 122 ACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 + + E+ A Q + I R R + A Sbjct: 130 IHIRLRRGLRALLAEQ---------AAKLAQIRDAQQAIL-VCPDDIPEARFAVRYVPAL 179 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPEL 241 + G D+ SE + ++ D++ L+AL L Sbjct: 180 EAGGDFYDVFPWSETVMVYFVADISGHDLGASFVTSSLKALVR--------QNANPLYTP 231 Query: 242 GALLKQVNHLLRQANLPGQ-FPLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQISN 297 LK +N +L G + + +R L LVSAG A + G + Sbjct: 232 VETLKNMNSVLTSFLRDGMHLTASLIFLNRTRSRLTLVSAGHPAAIKVGPDGTVETLACE 291 Query: 298 GVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 G LG + Q+ T G + Sbjct: 292 GDVLGVFESVQCGQIECAVSPGDRLYLYTDGLIE 325 >UniRef50_B4D1A0 Response regulator receiver modulated serine phosphatase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D1A0_9BACT Length = 396 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 72/343 (20%), Positives = 112/343 (32%), Gaps = 20/343 (5%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 ++L+ +DE V R LL G AADG + L L PDL++ D MP+ Sbjct: 14 DQRKPRVLLADDEAVSRRLLSESLQRSGFEVRQAADGEETLRLATDELPDLLVLDFEMPQ 73 Query: 64 MNGLKLLEHIRNRGDQ----TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 ++G ++ +R + PV++++A + L+ G D + KPV + L Sbjct: 74 LDGAQVCHLLRASDREDLRNLPVIMLTAHAGEVEEIGCLQAGANDFVTKPVSR-DVLAAR 132 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMVD-NPAAAAKLLQELQPPVQQVISHCRVNYRQL 178 + L + + W + + AAA Q L P V Sbjct: 133 IHTQLRLRSMADELRQRNDELARWRTEHEADLAAAHATQQALIPARLPTAEGWSVESIYQ 192 Query: 179 VAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRL 238 + G VL F+ +D T G L L LF + Sbjct: 193 PVIEVGGDVLGWRPAGHGCWHFWIVDATGHGAAAALLTALAVQLFRQACE--------TE 244 Query: 239 PELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQ 294 E GA+L VNH R+ F ++I AG G Sbjct: 245 REPGAILSTVNHEFRKVFGGRAFMTGCCALIDP-QGDVIFSGAGHPPLFVRRVNGNIDAF 303 Query: 295 ISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 +G LG Q +A + + G S + Sbjct: 304 GPHGTLLGLKDGDVYEQEHVTLEAGDVAVLYSDGLFSFK-SPD 345 >UniRef50_Q2SBW1 Response regulator containing a CheY-like receiver domain and a GGDEF domain n=4 Tax=Gammaproteobacteria RepID=Q2SBW1_HAHCH Length = 578 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 76/331 (22%), Positives = 132/331 (39%), Gaps = 19/331 (5%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILI +D Q R +L + G T A DGVDA+E F PD+++ D MPRM+G + Sbjct: 21 KILIADDNQSDRMILQNIVKKQGHDTATAVDGVDAIEKFSEFRPDIVLLDALMPRMDGFE 80 Query: 69 LLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY- 125 I+ D P++ +++ + +AK L G +D L KP + L+ + A Sbjct: 81 AARKIKLLAGEDLIPIIFLTSLSDAESLAKCLEAGGDDFLSKPYNRI-ILQAKINAFNRM 139 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 M + + + +++ D MV A + + ++ + + A G Sbjct: 140 RIMHKTLLRQRDQIAEHNDHMVREQQVAKTVFDNVAHVGCLGANNIK--HLLSPLAVFNG 197 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 VL + D T G + A+ L +F G+ + A LG +L Sbjct: 198 DVLLACQKPSGGMHVLLGDFTGHGLPAAIGAMPLAEIFYGMTSKGYA--------LGDIL 249 Query: 246 KQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLNTGEHQVQI--SNGVPLG 302 ++VN LR+ G F + + E + + + GL Q+ SN +PLG Sbjct: 250 REVNQKLRKILPVGFFCCACMAELNFEQEEIEIWIGGLPDCYLVQGDQLIKVASNRLPLG 309 Query: 303 TLGNAYLNQLSQRCDA--WQCQIWGTGGRLR 331 L + + R + + G + Sbjct: 310 ILKGEAFDARTYRFEMKHGDRVYLWSDGIVE 340 >UniRef50_B1ZXR5 Response regulator receiver modulated serine phosphatase n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZXR5_OPITP Length = 602 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 69/360 (19%), Positives = 131/360 (36%), Gaps = 30/360 (8%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + +L+V+DE++ +L +F G +A G +AL L+ DL+I DIAMP M Sbjct: 1 MAKLTVLVVDDEELILHVLLRFFRRRGDRCDVAPGGAEALRLVEAQRYDLVISDIAMPEM 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC- 123 NGL+L+ ++ R +++S DI +AL++GV D + KP+ DL L ++ Sbjct: 61 NGLELIRRVKERQPDAVCILMSGLGTRGDIIEALKIGVFDFIDKPIPDLAALTMVIDRAA 120 Query: 124 ------LYPSMFNSRVEEEE---------------RLFRDWDAMVDNPAAAAKLLQELQP 162 + + E+ +L + + + A ++ + P Sbjct: 121 ESGRLVRERNALLENLREQNTKLEYSLLRLHEAFAQLHQQEAVLESDLQKAQRVQRTFLP 180 Query: 163 PVQQVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRAL 222 +++ G AL++ +A Y +DV G + + + R L Sbjct: 181 AGFPRVANFDFFGYYAPCDQLGGDFFGTLALADGRMALYLVDVAGHGVSAAMITVTFREL 240 Query: 223 FNGLLQEQLAHQNQRLPELGALLKQVNHLL--RQANLPGQFPLLVGYYHRELKNLILVSA 280 + Q+ E +L+ +N L + P ++ + + +A Sbjct: 241 MRAGHRST--GQDALFGEPARVLRTMNEALIAEHFDPPIYVSMIYAVIDPGSGEVNVAAA 298 Query: 281 GLNATL---NTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 G + G G LGT ++ + G M S + Sbjct: 299 GHPPPILVARGGAAGDVEVGGTVLGTPAVTDYRAKRLLLGPGDALLFYSDGLSE-MRSPQ 357 >UniRef50_B8GB99 Response regulator receiver modulated diguanylate cyclase n=4 Tax=Bacteria RepID=B8GB99_CHLAD Length = 941 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 69/326 (21%), Positives = 115/326 (35%), Gaps = 12/326 (3%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+D+ LL W G +A G +AL+ + D+ + DI MP ++G+ + Sbjct: 566 VLVVDDDPNICRLLQIWLVDAGYRVEIAQSGFEALQRIAQGGIDVALIDILMPELSGIDV 625 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 L+ +R G + V++ +A + A+R G +D L KP+ L + + Sbjct: 626 LDQVRRAGPEPAVIMTTAFGSEQIAVNAIRHGADDYLRKPIDRQELLVVLERTLTNLRLQ 685 Query: 130 NSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVLD 189 + RL + + AA++ E+ P + + R + A D G D Sbjct: 686 RENAALQRRLEQKRRELEAEIKHAAQIQAEMLPQQMPRLPGYTIAARCIPARDVGGDFYD 745 Query: 190 IAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVN 249 + + L DV G + L RA+ + +E N R VN Sbjct: 746 WHFPAPHLLNLTFGDVMGKGMSAALLMTTTRAVIRSVARETPPEVNMRYA--------VN 797 Query: 250 HLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGVPLGTLG 305 L + F L + L V AG + G G PLG Sbjct: 798 ALYADLDRTSSFVTLCHSQLNLNTHTLAFVDAGHGLGFIRRHGGRFDRLEPRGAPLGIFS 857 Query: 306 NAYLNQLSQRCDAWQCQIWGTGGRLR 331 Q + I + G L Sbjct: 858 QEPYRQGETVLNPGDAFILFSDGLLD 883 Score = 121 bits (303), Expect = 5e-26, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 74/180 (41%), Gaps = 5/180 (2%) Query: 1 MTQPLVGK--QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICD 58 MTQ + + +LIV+D + + + G + D ++A LL PDL++ D Sbjct: 244 MTQRTISEPYTVLIVDDSPLMAEVYALALRAAGMQVIATTDPLEAPTLLAEQQPDLILLD 303 Query: 59 IAMPRMNGLKLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL 116 + MP +G +L IR + P++ +S + + AL G +D L KP+ L L Sbjct: 304 VYMPGCSGQELAAVIRQQPEYHSIPIVFLSGETDRSAQLAALARGGDDFLTKPIN-LEHL 362 Query: 117 REMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYR 176 V + + + + + L ++ V ++ + + + +++ Sbjct: 363 VAAVSSRIQRARAIRSLMVRDGLTGLFNHSVSQDLLTREVARARRNGQPLSVVLIDIDHF 422 >UniRef50_B5JB24 Stage II sporulation protein E n=3 Tax=Rhodobacteraceae RepID=B5JB24_9RHOB Length = 401 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 67/325 (20%), Positives = 133/325 (40%), Gaps = 7/325 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +I++ ED+++ + L + LG V A DGV ALELL ++I D+ MP ++G+ Sbjct: 7 KIIVAEDDELQQFYLCGLINGLGYEAVPAQDGVSALELLTQTDAQIVISDLQMPNLDGIG 66 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 L IR +++++ E+ +L GV+D + K L+ + Sbjct: 67 LTHKIRGLDLEHYIHIIMVTGAEDDDVRTASLLAGVDDFITK-GSGPAMLKARIRTATRL 125 Query: 127 SMFNSRVEEEERLFRDWD-AMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + + E R+ ++ + ++ AAA ++L P +++ I RV + ++ G Sbjct: 126 INHATELAERTRILEVYNARIQEDLRAAATAQRQLLPDLKKDIMGFRVASAFVPSSIVSG 185 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 + AL ++ L FY +DV+ G + L ++ + L A + P+L A++ Sbjct: 186 DMFGCFALCDDKLGFYAVDVSGHGVHAALLSVAIGHLVTPAYFITKAFDSSGTPDLAAMV 245 Query: 246 KQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNAT---LNTGEHQVQISNGVPLG 302 +N + F + G + L AG + +G + G P+G Sbjct: 246 AGLNTRFGASENDDYFTMFCGVVDKISGRLDYCQAGYPSPSYVDQSGTAEAIGDGGFPVG 305 Query: 303 TLGNAYLNQLSQRCDAWQCQIWGTG 327 + + + I + Sbjct: 306 MISGVAYENKVHQFEIGGALIICSD 330 >UniRef50_Q1N5B1 Putative response regulator n=1 Tax=Bermanella marisrubri RepID=Q1N5B1_9GAMM Length = 560 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 64/335 (19%), Positives = 121/335 (36%), Gaps = 22/335 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 IL+V+D+ R +L G A +G +A+ DL++ D+ MP M+GL Sbjct: 1 MHILVVDDQVTNREILKWLLEDEGHQVSEAQNGEEAVNEFKSGDFDLVLMDVIMPIMDGL 60 Query: 68 KLLEHIRN---RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 + + I+ + PV+ ++A ++ + L G +D L KP ++ L+ + A L Sbjct: 61 EATKRIKEIGQEDNYVPVIFLTALDDAKALKDCLDSGGDDFLSKPYNEV-ILKAKIHAHL 119 Query: 125 YPSMFNSRVEEEERLFRDWDAM-VDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 + E+ + ++++ + + + + R + A+ Sbjct: 120 RIRELTRDISEKNAVLTHYNSLWQREQNIVSHIFNKALEHNIKNTRSLRTH--IQPASTF 177 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGA 243 G ++ A L + D T G + L L FN L L +G Sbjct: 178 NGDIVLSAPSLTGGLYVFVGDFTGHGLGASIGTLPLVHAFNELAIRHL--------SVGE 229 Query: 244 LLKQVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNATL----NTGEHQVQISNG 298 + + N +LR F + ++ L + GL + G S Sbjct: 230 IAYEFNRMLRSMLPDYMFCCATIVELNESGDSVQLWTGGLPDGYLISESEGVVDTLCSEN 289 Query: 299 VPLGTLGNAYLN--QLSQRCDAWQCQIWGTGGRLR 331 +PLG + N + + Q I T G + Sbjct: 290 MPLGIESDERFNKGFQVKHLKSDQKLIIITDGIIE 324 >UniRef50_B9XP30 Response regulator receiver modulated serine phosphatase n=1 Tax=bacterium Ellin514 RepID=B9XP30_9BACT Length = 385 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 65/337 (19%), Positives = 120/337 (35%), Gaps = 29/337 (8%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L +IL+V+D +V +L S LA G AL++ PDL++ DI MP M Sbjct: 4 LSDCRILLVDDAKVNLDILVEGLKSD-HKLSLALTGETALQIASRTPPDLVLLDIVMPGM 62 Query: 65 NGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 +G ++ +R + P++ +S+ E + + G D L KP D+ ++ V + Sbjct: 63 DGYEVCRRMRQIPETAEVPIMFLSSLEEIQNKTLGFEAGANDYLTKPF-DMLEVKARVRS 121 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPP---VQQVISHCRVNYRQLV 179 L ++ V+E+ + A ++ + P + + Sbjct: 122 LLKAKAYSDEVKEQ---------IATELRFAREIQMGMLPHDFIPVERDYGVQFGAVLEP 172 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 A + G + I A L + DV+ G + + +L L ++ + Sbjct: 173 AREVGGDLYGICAAGAERLVIFFGDVSGKGIPASMFMVRAISLARLLARD--------MA 224 Query: 240 ELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL----NTGEHQVQ 294 E +L ++N L N G F L + + L L +AG + + Sbjct: 225 EPEHILARLNDELATDNPSGMFVTFLCAVFEPKSGRLTLANAGHCRPVLRPADAPPRWAM 284 Query: 295 ISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + G LG + I + G Sbjct: 285 KNLGTALGFEPGMEFERAELNLRPGDSLILYSDGVTE 321 >UniRef50_C5CE55 Response regulator receiver modulated serine phosphatase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CE55_KOSOT Length = 381 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 65/336 (19%), Positives = 132/336 (39%), Gaps = 25/336 (7%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K++L+++D++ R LL G V A+G +L+ F PDL++ D+ +P +NGL Sbjct: 2 KRVLVIDDDRTVRMLLKVILKKAGYDVVECANGKTSLKKAESFKPDLILLDLMLPDINGL 61 Query: 68 KLLEHI--RNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 +LLE + P++V++ + + + ALR G D + KP L V L Sbjct: 62 QLLETFTSKENLKDVPIIVLTGSTDEENKLTALRSGAVDFITKPFLSEEVLL-RVRTQLR 120 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 ++E + + D+ AAAAK+ + L P RVN+ + + G Sbjct: 121 IHSLIHSLQE------AVEKLQDDVAAAAKIQKALVPVSTPQGFRDRVNWIYEPSYNVGG 174 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAH--QNQRLPELGA 243 + D L++ Y DV G + ++ +F+ +++ + + EL Sbjct: 175 DIFDFIKLNDEKELIYLADVAGHGVKAAMLSV----IFHRFVEDYVENIKNQGEKLELSK 230 Query: 244 LLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQ-------IS 296 L++ + + + R+ + + +AG + + + + Sbjct: 231 LIRALEDNFKFDKFDLFITTVAVVIDRKNMRIEIGNAGHPSPFFMKKKDRKTFFVNDPVE 290 Query: 297 NGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 + + LG + + T G + + Sbjct: 291 SMLGLGLVEG---KTKVLEINRGDRIYLFTDGVIEV 323 >UniRef50_B3PEZ3 Response regulator n=3 Tax=Gammaproteobacteria RepID=B3PEZ3_CELJU Length = 592 Score = 254 bits (649), Expect = 3e-66, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 122/331 (36%), Gaps = 21/331 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+ +D R +L+S G +LA +G++A+ PD+++ D MP M+G Sbjct: 31 KILVADDTDTDRLILESILRKEGHQVLLARNGLEAISAYEAEHPDIVLLDALMPEMDGFG 90 Query: 69 LLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 I+ P++ +++ + + + L G +D L KP + L+ + A Sbjct: 91 AARTIKQLAGDELVPIIFLTSLSDTESLVRCLDAGGDDFLSKPYNRV-ILQAKIKAFNRM 149 Query: 127 SMFNSR-VEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 +S + + +++ + + ++ A + + + R A G Sbjct: 150 RELHSTMLTQRDQIVQYNNRLLQEQQVAKHVFDNVAHSGCLNAKNVRF--FLSSLAVFNG 207 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 VL A ++ D T G + A+ L + F G++ + + +L Sbjct: 208 DVLVAAMRPNGNMMVLLGDFTGHGLPAAIGAMPLASTFYGMVPKGFG--------MSDIL 259 Query: 246 KQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLNTGEHQV----QISNGVP 300 +++N L+ G F ++ + + + + + GL + S +P Sbjct: 260 REINGKLKNILPVGIFCCAIMLDINFRKRRVKIWNGGLPDAFIYRQKTATVVPVRSTHLP 319 Query: 301 LGTLGNAYL--NQLSQRCDAWQCQIWGTGGR 329 LG L N N + G Sbjct: 320 LGVLSNRAFKDNCEYFELAINDRIFLWSDGI 350 >UniRef50_C6C148 Response regulator receiver protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6C148_DESAD Length = 397 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 67/337 (19%), Positives = 123/337 (36%), Gaps = 19/337 (5%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+D R+ L A+DG++ + P +++ D+ MP M+G Sbjct: 16 KILVVDDSATMRNFLTRVLEGD-YDVETASDGLECIAQYMKVKPSVILLDLLMPGMDGFD 74 Query: 69 LLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +++ IRN + ++V++ + A+AL G D L KP + L+ V + Sbjct: 75 VIDKIRNVINDQEVIIIVLTGQDEQEIKARALNSGANDYLTKPFH-VVELKARVGVAIRQ 133 Query: 127 SMFNSRVEEEER-LFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 M +++ + L R +D + D A+L +L P V VI + + G Sbjct: 134 VMLTRQLQAANKSLQRAYDIIDDEVKLVARLQDKLLPTVIPVIEGLDIKSMYRPSGRASG 193 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 D+ L + + DV+ G ++R LF +L L Sbjct: 194 DYYDVFGLKDGVVRVIMADVSGHGPQAAFIMAIVRTLFKA--------DGANHNDLAESL 245 Query: 246 KQVNHLLRQA-NLPGQF-PLLVGYYHRELKNLILVSAGLNATLNTGEHQV---QISNGVP 300 Q+N L F L + +SAG L + ++ +++ P Sbjct: 246 NQINEHLLDLIGKDSYFVTLFAADIDFNKGVMKYMSAGHCPALAMLDGEMSDPLVADVPP 305 Query: 301 LGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 LG R + T G ++ + Sbjct: 306 LGFFP-VNCVLSECRFTSSLRLFLFTDGCYEWRMNDD 341 >UniRef50_Q28WC4 Response regulator receiver (CheY-like) modulated serine phosphatase n=1 Tax=Jannaschia sp. CCS1 RepID=Q28WC4_JANSC Length = 426 Score = 253 bits (648), Expect = 5e-66, Method: Composition-based stats. Identities = 59/343 (17%), Positives = 128/343 (37%), Gaps = 21/343 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +L+++D R+++ + G T + D V+AL L++CD MP M G + Sbjct: 24 TVLVLDDSPAQRNMVCALLRRWGHTAISTGDPVEALARAREPDISLILCDWMMPEMTGPE 83 Query: 69 LLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +R+ T VL++++ + +A+ L G +D L KPV+ L+ + A Sbjct: 84 FCHRLRSEVTDTYPYVLLLTSNTDRGAVAEGLAAGADDFLNKPVRPP-ELQARMNAGARI 142 Query: 127 SMFNSRVEEEERLFRD--------WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQL 178 + + L +DA+ + A +L + V+ Sbjct: 143 VAMQQELRAKNGLLETTLDELQLLYDAIDRDLDEARRLQMASLQDTHRPFKGGDVSLLLE 202 Query: 179 VAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQE-----QLAH 233 + G ++ ++++ + + LDV+ G + A + + + + Sbjct: 203 ASGHVGGDMVGYFNVTDDTIGLFSLDVSGHGVASAMLAARTAGMLSEASPDQNIAMERGP 262 Query: 234 QNQRLPELGAL-LKQVNH-LLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN---T 288 Q + + ++N LL++ F + + + + + L +V AG + T Sbjct: 263 DGQFFDLPPDIAVGRMNDLLLKEVQTDRYFTICIAFANLKTGLLRIVQAGHPHPMVLRAT 322 Query: 289 GEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 G+ + G P+G L N + + + + G Sbjct: 323 GQVDMVGDGGPPVGLLPNMPFTSFELQLNPGDRVLMYSDGLTE 365 >UniRef50_Q01YK8 Response regulator receiver modulated serine phosphatase n=6 Tax=Bacteria RepID=Q01YK8_SOLUE Length = 395 Score = 253 bits (647), Expect = 6e-66, Method: Composition-based stats. Identities = 80/346 (23%), Positives = 129/346 (37%), Gaps = 26/346 (7%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSS---LG-ATTVLAADGVDALELLGGFT-PDLMICDIA 60 +QIL+V+DE L+ F G + +G +AL L G D+++ DI Sbjct: 8 TPRQILVVDDEPDLELLVRQRFRRQIREGEFEFFFSHNGEEALVALDGKPTIDVVLSDIN 67 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP M+GL LL +R R +V+SA +M +I A+ G D L+KP+ D L + Sbjct: 68 MPVMDGLTLLGKLRERQGCLKAVVVSAYGDMPNIRTAMNRGAIDFLMKPI-DFEDLEITI 126 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVIS---HCRVNYRQ 177 L + + + + A+ + AA++ Q + P ++ Sbjct: 127 RKTLDHV---AAIRQSMAVQESLLAIRQELSVAARIQQSILPRTFPPFPARKDFELHASM 183 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 + A + G + D L E+ L DV+ G L + R L ++L Sbjct: 184 IPAKEVGGDLFDFFLLDEDHLGLVLGDVSGKGVPAALFMAVSRTLLRATALQKLP----- 238 Query: 238 LPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLN---TGEHQV 293 G L+ VN L N F + G + L + G N G+ + Sbjct: 239 ---PGECLQYVNTTLAAQNPSHMFVTMFYGILNTRTGELQFANGGHNPPYVFSADGKVRE 295 Query: 294 Q--ISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 NG+ +G L A S + + T G M E Sbjct: 296 LPRNKNGMIVGLLDGAPYQTASHTIAPGEALLVYTDGVTEAMDRRE 341 >UniRef50_Q2W3W2 Serine phosphatase RsbU n=2 Tax=Magnetospirillum RepID=Q2W3W2_MAGSA Length = 390 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 79/340 (23%), Positives = 136/340 (40%), Gaps = 27/340 (7%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGAT-TVLAADGVDALELLGGFTPDLMICDIAMP 62 L ++L+VED ++ R + S+G T A DG + LE + F PD+++ D+ MP Sbjct: 10 DLAQAKVLVVEDNEMNRIFACAVLESMGLTNVECARDGREGLEKVESFAPDIVLLDLMMP 69 Query: 63 RMNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MNG + L +R R PVLV+SA + G D + KP+ D L V Sbjct: 70 VMNGEQFLVALRADPRYRALPVLVLSAVIDQTTRNALFAAGANDYIGKPI-DRRELVARV 128 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVIS-----HCRVNY 175 L + + + R D + + A+ + L P Q+ +N Sbjct: 129 EVHLRSHLLLADLR------RYRDRLAVDLRMASGMQNALLPGPAQMREARDRYGLSINA 182 Query: 176 RQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQN 235 + + G + + + ++ LA Y +D + G + L L L + Sbjct: 183 VFNPSTELGGDLWGLVPVDDHRLALYTVDFSGHGVAASINTFRLHLLLQDL--------D 234 Query: 236 QRLPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLN---TGEH 291 ++ A+L++VN L+Q GQF + + R+ + L LV+AG A + GE Sbjct: 235 AQMGFPDAVLEKVNVTLKQLLPRGQFATMTLVVIDRQERTLSLVNAGGPAPILVEPGGEP 294 Query: 292 QVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + G+PLG A ++ + + Sbjct: 295 HLVGGVGLPLGISLEARYELVTMPFPPGSQLSLYSDALID 334 >UniRef50_Q12BT3 Anti-sigma-factor antagonist (STAS) domain protein n=1 Tax=Polaromonas sp. JS666 RepID=Q12BT3_POLSJ Length = 566 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 77/336 (22%), Positives = 127/336 (37%), Gaps = 23/336 (6%) Query: 11 LIVEDEQVFRSLLDSWFSSLGAT-TVLAADGVDALELLGGFTPD--LMICDIAMPRMNGL 67 L+V+D+ V R ++ G + AADG+ A +L PD L++ DI MPRM+GL Sbjct: 10 LVVDDQPVTRLMVKRALERFGCAPVLEAADGIAAQAILREH-PDVALVLTDIMMPRMDGL 68 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 +LL R +V+S + A+R G D L KP L + V L Sbjct: 69 ELLHWGRETVPGAIWIVLSGLDTFDSAVAAIRFGAFDFLPKP-PRLEEMEVSVRNALERR 127 Query: 128 -------MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQE-LQPPVQQVISHCRVNYRQLV 179 ++ ++ + R + ++ A+++Q L P + V Sbjct: 128 RLLAEQARLHAELQRKVRELEEKSELLRRDLERAEVIQRALLPGSPPPVESYCVQAVYRP 187 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 G + D+ L E LAFY D T G + ++L + + + R Sbjct: 188 GQHVGGDLYDVVRLGERHLAFYLADATGHGVTSAMLSVLFKQRL-----VLVDPETGRAL 242 Query: 240 ELGALLKQVNHLLRQAN--LPGQFPLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQ 294 A+L VN L Q+ ++G ++ L SAG L+ E ++ Sbjct: 243 APAAVLDAVNRSLCQSIEAPGLFVTAVIGLLDTVEGSVTLASAGHPPVLHVREGRETRLI 302 Query: 295 ISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRL 330 G LG +A ++ + T G L Sbjct: 303 RRTGPALGLALDARFHEERLWLAPGDRMLLYTDGLL 338 >UniRef50_Q64S15 Sigma factor SigB regulation protein RsbU n=5 Tax=Bacteroides RepID=Q64S15_BACFR Length = 389 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 66/341 (19%), Positives = 121/341 (35%), Gaps = 27/341 (7%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSL----GATTVLAADGVDALELLGGFT-PDLMICDIA 60 + +IL V+DE LL +F A +G++AL+ L D+++ DI Sbjct: 1 MAVKILSVDDELDLEVLLTQYFRRQIRKGEYEFAFAHNGLEALQKLLETPDFDIILSDIN 60 Query: 61 MPRMNGLKLLEHIRN-RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 MP M+GL LL + + +++SA +M +I A+ G D KP+ DL+ L Sbjct: 61 MPEMDGLTLLAKVNELKNPAMKCIMVSAYGDMDNIRSAMNKGAFDFATKPI-DLDDLSRT 119 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHC----RVNY 175 + + + + E ++ +++ ++ A A ++ Q + P + Sbjct: 120 IEKAIEQVRY---IRESQQEHNQLESIKNDLAIAGEIQQTILPRSFPPFPELTEVVNIYA 176 Query: 176 RQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQN 235 A D G D + + + DV+ G L + R L Sbjct: 177 SMTPAKDVGGDFYDFFQIDDERIGLVIADVSGKGVPASLFMAVSRTLLRA--------TA 228 Query: 236 QRLPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLNTGEHQVQ 294 R L N LL + +L F + G YH + + +AG N + Sbjct: 229 LRGVSSAECLTYANKLLCKESLDSMFVTVFYGIYHYKTGMMDYTNAGHNPPYLLRGGRTV 288 Query: 295 I----SNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 ++ +G + + + T G Sbjct: 289 ECLPVASNFVVGVFDDIEFESNTLTFGIGDTLLLYTDGVTE 329 >UniRef50_C8X119 Response regulator receiver modulated serine phosphatase n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X119_DESRD Length = 526 Score = 251 bits (641), Expect = 3e-65, Method: Composition-based stats. Identities = 60/333 (18%), Positives = 114/333 (34%), Gaps = 11/333 (3%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG-GFTPDLMICDIAMPRMNGLK 68 IL+V+ + + A G AL+L ++I + +P M+G+ Sbjct: 125 ILVVDANPESLASITLCLQRYLFAVQGATTGTQALQLFDARTDVKVVIVEADLPDMDGMA 184 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 L +R R ++ ++ +SA + + A+ L+ G D L KP + L + L Sbjct: 185 LCSRLRKRKARNELAIIGVSAAQEGSLSARFLKKGANDFLTKPFQR-EELYARLLQNLDT 243 Query: 127 SMFNSRVEEEERLFRDWD-AMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 ++ E+ R + + M + AAA++ Q L P I + N+ G Sbjct: 244 LEVIAKKEQLLRTIQKMNQRMQRDLEAAAEVQQRLLPYSLPEIPGIKTNWYFQPCEQLAG 303 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLR---ALFNGLLQEQLAHQNQRLPELG 242 L + + L Y LDV+ G L A+ L + N L Sbjct: 304 DALGVFKIDAEHLGLYVLDVSGHGVPAALLAVSAVQTLQLHATSPESSSGSCNSILHTPQ 363 Query: 243 ALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGV 299 +++ ++ ++ G + L AG G +V + G Sbjct: 364 QVMELLDREFPLERFDKFLTIVYGVLNTNSGCLQYSVAGHPPPFLVHRDGYTEVLDTGGS 423 Query: 300 PLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 +G G + ++ + G + Sbjct: 424 FVGLGGAIPFESRTVCLQPGDKVVFYSDGVTEM 456 Score = 57.1 bits (137), Expect = 8e-07, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 6/126 (4%) Query: 8 KQILIVEDEQVFRSLLDSWFSSL-GATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 K IL+V E + L G +A A L + L++ D+ +P Sbjct: 2 KHILLVIAENGLATTLQEALQDHFGGEVHVAESLQTARTALQWCSYSLVLTDLRLPDAPH 61 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + ++ + G P++V+++ + + L G+ D + KD ++ V + Sbjct: 62 GECIDALLQTG--VPIIVLTSDLSSEGRQELLDKGIVDYI---FKDEPQVISDVIQAIER 116 Query: 127 SMFNSR 132 + N Sbjct: 117 TDKNRE 122 >UniRef50_UPI00016C38B1 response regulator n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C38B1 Length = 386 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 70/342 (20%), Positives = 139/342 (40%), Gaps = 21/342 (6%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGA-TTVLAADGVDALELLGGFTPDLMICDI 59 M +P ++L+V+D+ + + + D +A++ F P +++ D+ Sbjct: 1 MAEPH-PIKVLLVDDQPMVGETVRRMLADEPLVEFRYCPDPANAIDTANAFKPTVILQDL 59 Query: 60 AMPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP ++GL+L+++ R + P++V+S+ E AKA LG D ++K + D + Sbjct: 60 VMPDIDGLQLVKYFRANSGTREVPLVVLSSKEEPVVKAKAFALGANDYMVK-LPDRLEVL 118 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAA----AAKLLQELQPPVQQVISHCRV 173 V Y S + E +R+ A AA AA+ +Q L PP ++ Sbjct: 119 ARVR---YHSRGYVALLERNEAYRELAATQREMAAELSRAARYVQSLLPPPLSS-GPVQI 174 Query: 174 NYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAH 233 ++ + + G + + + LA Y LDV+ G L A+ + N L + Sbjct: 175 AWKFVPSTQLAGDMFGYRWIDKEHLALYLLDVSGHGVGSALLAV---SAGNVLSANSIPG 231 Query: 234 QNQRLPELGALLKQVNHLLRQANLPG-QFPLLVGYYHRELKNLILVSAGLNA--TLNTGE 290 + + GA++ ++N + + G F + G YH + L +AG L+ G Sbjct: 232 ADP--RDPGAVVTKLNDMFQMDRQDGKYFTIWYGVYHAANRTLAYCNAGHPPALLLSGGT 289 Query: 291 HQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 + +G + + S + + G + + Sbjct: 290 LHSLEAEAPAVGMMPEMPYDTKSVPVSPDARLLVFSDGIMEI 331 >UniRef50_C1DQE9 Response regulator n=19 Tax=Pseudomonadaceae RepID=C1DQE9_AZOVD Length = 575 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 61/334 (18%), Positives = 125/334 (37%), Gaps = 25/334 (7%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILI ED R LL + G + A +G++A+ + P +++ D MP M+G + Sbjct: 7 ILIAEDSPADRMLLATIVGRQGYRVLTAGNGLEAIMMFARERPHMVLMDALMPVMDGFEA 66 Query: 70 LEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 I+ + P++ +++ + + L +G +D + KP + L + A Sbjct: 67 ARRIKQMAGEELVPIIFLTSLTENEALVQCLEVGGDDFIAKPYNSV-ILDAKIKAMDRLR 125 Query: 128 MFNS-RVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 + +E+ + + R + +++ A + ++ + R Y Q A G Sbjct: 126 RLQATVLEQRDLIARHNEHLLNEQRVAKAVFDKVAHSGCLNAPNIR--YMQSPYALFNGD 183 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 ++ A + D T G + A+ L +F G+ + L +L+ Sbjct: 184 LMLAAFKPSGGMHVLLGDFTGHGLPAAIGAMPLAEVFYGMTAKGY--------SLAEILR 235 Query: 247 QVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNATL----NTGEHQVQISNGVPL 301 ++N L++ G F V + + + + + GL ++GE S +PL Sbjct: 236 EMNAKLKRILPVGVFCCAVMLNLSFQRRVVEVWNGGLPDGYLRRGSSGERIPLRSRHLPL 295 Query: 302 GTLG----NAYLNQLSQRCDAWQCQIWGTGGRLR 331 G L + + + G L Sbjct: 296 GILDASCFDDRYEIY--PMETGDRIFLLSDGVLE 327 >UniRef50_Q15VH2 Response regulator receiver protein n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15VH2_PSEA6 Length = 548 Score = 250 bits (640), Expect = 5e-65, Method: Composition-based stats. Identities = 56/335 (16%), Positives = 124/335 (37%), Gaps = 20/335 (5%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGA-TTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 +ILIV+D+ + R LL G A G +A+ L P+L++ D+ M MNG Sbjct: 1 MRILIVDDDSLNRFLLLHMLEQKGYVDCYEAESGHEAVSLAKRINPELVLLDVMMDDMNG 60 Query: 67 LKLLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 ++ ++ + P++ I+A ++ + + L +G +D + KP L + A Sbjct: 61 YEVAPILKEQAGDIYLPIIFITALDDEESLVRCLEVGGDDFVAKPFNK-TILAAKISAHA 119 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 + + E+ + + + V+ + + + + +++ + A D Sbjct: 120 RTRELSKKSYEQNQQLVFYRSAVEREHKIVEHIFSNAVTNDKKLLPY-IDFTLMPATDFN 178 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 G +L +A L + D T G + AL + F+ + + L + + Sbjct: 179 GDLLLFSASPNGGLYYLIGDFTGHGLAAAIGALPVSQAFHTMASKGL--------SVFEM 230 Query: 245 LKQVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNAT----LNTGEHQVQISNGV 299 + +N L + F + ++G+ LN + S + Sbjct: 231 AQTLNETLLKLLPGDMFFAAAIVHISSTGTRFEIWNSGMPDLLLFDLNGQVIKRFGSQHM 290 Query: 300 PLGTLGNAYLNQ--LSQRCDAWQCQIWGTGGRLRL 332 LG L + + + + + + G + + Sbjct: 291 ALGILEPHEMGKDVQRHQSSVGERLLAFSDGVIEI 325 >UniRef50_Q0AT15 Response regulator receiver modulated serine phosphatase n=1 Tax=Maricaulis maris MCS10 RepID=Q0AT15_MARMM Length = 394 Score = 250 bits (640), Expect = 5e-65, Method: Composition-based stats. Identities = 69/342 (20%), Positives = 122/342 (35%), Gaps = 26/342 (7%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGAT-TVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 IL+V+D + R L+ S ++ G + A+DGV+ALELL D++I DI MPR + Sbjct: 13 TATILVVDDLKSSRLLIGSILNAAGFNNLIFASDGVEALELLEQTPVDMVILDIVMPRKD 72 Query: 66 GLKLLEHIRNR-GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 G+ + +R R G P+L+ ++ ++ A A G D++ KP+ + + L Sbjct: 73 GISVCREVRERLGLTMPILIQTSLQDADHRATAFDAGASDIVSKPIH-AHEIVSRTRLHL 131 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVIS-----HCRVNYRQLV 179 ++ R M D AA + L +V + H R+ Sbjct: 132 ERRRMIDSLQRYRR------RMQDELRAAEAMQVSLLKSDDEVAAIAGPRHARMTTFYKA 185 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 + G + + + E + +D++ G + A + L ++ Sbjct: 186 SNQLGGDLWQVFEIDETRFGIFMVDLSGHGVAAAINAFRVHMLAEDRTHDR--------T 237 Query: 240 ELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQI 295 G L VN L Q F G + +AG + G ++ Sbjct: 238 SPGDWLTSVNANLCQILPVEHFATAFYGVVDIARGRIEYAAAGAPPPILLDREGGWRLID 297 Query: 296 SNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 +GV LG A S + + + Sbjct: 298 GSGVILGCSEGARYETHSTPIRQGDRIFFYSDALYEKFDEPD 339 >UniRef50_C6J6U9 Phosphoserine phosphatase n=2 Tax=Bacillales RepID=C6J6U9_9BACL Length = 384 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 61/346 (17%), Positives = 117/346 (33%), Gaps = 38/346 (10%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGAT----TVLAAD-----GVDALELLGGFTP---DLM 55 +ILIV+D ++ A D GV L+ + P DL+ Sbjct: 1 MRILIVDDNPTNTMIIREILKKENYRNTVTVTSARDMFERLGVKNLDAVEESGPSDVDLI 60 Query: 56 ICDIAMPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDL 113 + D+ MP M+G++ ++ + P++V++A + +A+AL G D + KP+ + Sbjct: 61 LLDMMMPEMDGIQACRILQRSEHLKEIPIIVVTAVGDSHKLAEALDAGAVDYVTKPINKV 120 Query: 114 NRLREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRV 173 L + L + R+ D + A L+Q S + Sbjct: 121 -ELMARIRLALRLKLEKD-------WHRNRDQRIQEELKLASLVQNAVLSPPIHDSEVEI 172 Query: 174 NYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAH 233 + + + G + +L E A LD+ G + +LF + L Sbjct: 173 DALYKPSYELAGDLYSWYSLGEGKYAVILLDMMGHGISS--------SLFCMFISSVLKD 224 Query: 234 QNQRLPELGALLKQVNHLLRQANLPG-----QFPLLVGYYHRELKNLILVSAGLNATL-- 286 E +++++N Q ++ F + K + V+AG L Sbjct: 225 TVFTYVEPKLVIEELNRRFIQLHIESKLIQYYFTAIYLVVDTRRKVIEYVNAGHPPALLY 284 Query: 287 -NTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 N + G P+G + + + T G + Sbjct: 285 TNNKQPVRLDQVGPPVGLFHGIETHPQILHYEGPGHLVLYTDGLMD 330 >UniRef50_B7GKR0 Response regulator with PP2C-type protein phosphatase output domain (REC-PP2C domains) n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GKR0_ANOFW Length = 378 Score = 249 bits (637), Expect = 8e-65, Method: Composition-based stats. Identities = 56/342 (16%), Positives = 125/342 (36%), Gaps = 26/342 (7%) Query: 8 KQILIVEDEQVFRSLLDSWFSS-LGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 +++I++D ++++ G + L D A + D+++ DI MP +G Sbjct: 1 MEVVIIDDYMPILEMMEAMLEHIEGISIHLFEDADKAYAYILSQQVDVILMDICMPETDG 60 Query: 67 LKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 ++ ++ PVL+++ ++ + +A G D + KP + L V Sbjct: 61 IEWCRRLKQHEQLQHIPVLMVTGYDDEQKLEEAFAAGAFDYIRKPFT-MVELVARVQLAY 119 Query: 125 YPSMFNSRVEEEERLFRD--------WDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYR 176 +++ + + M ++ A + + L P H + Sbjct: 120 RQKETMDQLKRTNEAYMESYRHMWMMQKKMNEDLQLARLVQEGLLPEPLNN-EHIHLIGT 178 Query: 177 QLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQ 236 + + G + + + AF +DV G L A+ +R+L +GL+ Sbjct: 179 YIPSTQLSGDLYFWQQVRPHMYAFIVIDVMGHGVASALVAMSIRSLLHGLM--------T 230 Query: 237 RLPELGALLKQVNHL---LRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL--NTGEH 291 ++ + +++++N L F G + K + V+AG L + Sbjct: 231 KVTDPLLVVQELNRHAFQLFGKETKYYFTAFYGTIDVKKKVIEYVNAGHPPALLMTNRKI 290 Query: 292 QVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 + G+P+G + NA + I T G + ++ Sbjct: 291 MLLKEGGIPIGIVANAPYKKGMISFQDDVYLILYTDGLIEVL 332 >UniRef50_B4EXS4 Response regulator n=3 Tax=Proteus RepID=B4EXS4_PROMH Length = 339 Score = 249 bits (637), Expect = 9e-65, Method: Composition-based stats. Identities = 137/337 (40%), Positives = 204/337 (60%), Gaps = 3/337 (0%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF-TPDLMICDI 59 M + LVGK+ILI++DE VFR++L +FS A +G AL LL PDL++CDI Sbjct: 1 MNKALVGKKILIIDDEVVFRTMLTEYFSHEKACVYATDNGSQALLLLEEGLRPDLILCDI 60 Query: 60 AMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 MP MNG L H+ R PV+ IS T+NMA+I LR G +DV LKPV +L +L++ Sbjct: 61 RMPVMNGPTFLCHLEQRHWSFPVIAISCTDNMAEIDDMLRFGAQDVFLKPVTNLAKLKQK 120 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLV 179 V L P F S + +L W+ + + P ++++QP V+Q+++ VNYRQL Sbjct: 121 VIEVLCPGFFESELIARGQLGPLWNNLREQPHYIQSFVKQMQPQVKQIVAGYNVNYRQLN 180 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 A + GL+ DIA LS++ + FYC+DV+ NG+L ALLLR +FN L+ + + LP Sbjct: 181 DASQMGLLFDIATLSKDQIIFYCVDVSNDEENGLLVALLLRVVFNRFLKAT--EKRRFLP 238 Query: 240 ELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGV 299 + +L ++N +L + G FPL++GYYH + KN++L SAGL A + T + +++G+ Sbjct: 239 SMYNILNKINKMLEDMGVRGSFPLILGYYHTKEKNILLASAGLRAEIKTENKKYVLNSGI 298 Query: 300 PLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSA 336 PLGTL + Y+NQ+ WQC+IW ++ LM S Sbjct: 299 PLGTLHSLYINQIKCVGIDWQCKIWNQHHKINLMFSP 335 >UniRef50_A0LBV4 Response regulator receiver protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LBV4_MAGSM Length = 365 Score = 249 bits (637), Expect = 9e-65, Method: Composition-based stats. Identities = 62/336 (18%), Positives = 114/336 (33%), Gaps = 35/336 (10%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +IL+V+D+ + L+ + + G V AADG + P L++ D+ MP M+G Sbjct: 2 AKILVVDDDPMSLMHLEYFLAQQGHEVVTAADGHQGVAAFEQIQPQLVLMDVMMPNMDGY 61 Query: 68 KLLEHIRNRGDQ---TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 HI++ PVL ++ + +A L G +D + KP ++ L+ + A L Sbjct: 62 TATGHIKSSSADRNQVPVLFLTGIADQTMLAHCLACGGDDFITKPFDNI-ILKARIDAWL 120 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 ++RV+ + + + Y Sbjct: 121 RRIELDNRVKADRLKVEGVLLRMREDDR---------------FDGRNLRYLMTPLEKTN 165 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 G ++ A + D T G +A LL +F + E Q + Sbjct: 166 GDIILSARTPDGTQHTMVGDFTGHGLPAAIAGPLLSEIFYHDVAEGAPGQ--------HI 217 Query: 245 LKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQISNGVP 300 L +N L++ F + ++ L + G+ L S +P Sbjct: 218 LTHINQTLQKKLPTAMFLCATYLTIGPDRNSVQLWNCGMPDLLIFDPDLTVHRLTSTHMP 277 Query: 301 LGTLGNAYLNQLS---QRCDAWQCQIWGTGGRLRLM 333 LG + NQ S Q + + G + + Sbjct: 278 LGIMP-QPFNQDSGRIHPLQPSQRLVVYSDGIVETL 312 >UniRef50_A3DCZ0 Response regulator receiver protein n=3 Tax=Clostridium thermocellum RepID=A3DCZ0_CLOTH Length = 394 Score = 249 bits (637), Expect = 1e-64, Method: Composition-based stats. Identities = 57/328 (17%), Positives = 124/328 (37%), Gaps = 8/328 (2%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF--TPDLMICDIAMPRMN 65 +IL+++DE + G + A+ + L + + D++I D+ MP+++ Sbjct: 2 AKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLS 61 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G+ +L I+ V++++ ++ + A++ G + L KPV + + A Sbjct: 62 GMDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINR 121 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + + L + + +AAK+L + P I G Sbjct: 122 KKLLMENERMTQELLAHRNYLQGLHDSAAKILLNMLPKNLPDIEGFNFAVDYKSCDGVGG 181 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 + D+ + + + FY DV+ G + ++++++ + N+R ++ Sbjct: 182 DMYDVCDIGD-YICFYVFDVSHHGILAAVISIIIKSFLQNIEYNYRQGINKRRFP--EIV 238 Query: 246 KQVNHLLRQANLPGQFP-LLVGYYHRELKNLILVSAGLNATLNTGEHQV--QISNGVPLG 302 +N L F L +G+ + K L VSAG E+ + S G LG Sbjct: 239 LDLNLELLSNTAQNVFASLFLGFIDKNSKKLYTVSAGHIPQYIMKENGLVPLESTGPILG 298 Query: 303 TLGNAYLNQLSQRCDAWQCQIWGTGGRL 330 ++ + + + T G + Sbjct: 299 VFEDSTYKCAVNQLEPGDKVLLFTDGII 326 >UniRef50_C6BU34 Response regulator receiver modulated serine phosphatase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BU34_DESAD Length = 395 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 63/331 (19%), Positives = 125/331 (37%), Gaps = 14/331 (4%) Query: 10 ILIVEDEQVFRSLLDSWFSSLG-ATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +L+++D+ + + + +D A+ P +++ D+ MP ++G+ Sbjct: 16 VLLIDDQPMVGEAVRRMLAGEDDIDFHFVSDPTKAIPTAEELQPTVILQDLVMPEIDGMT 75 Query: 69 LLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY- 125 +++ +R ++ P++V+S E A+A LG D L+K + D L + Sbjct: 76 MVKFMRVNSKLKDIPLIVLSTKEEPTTKAEAFALGANDYLVK-LPDRIELLARIRYHSKG 134 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 R E E+L D M A AA + L P + + ++R + +A G Sbjct: 135 YINLLQRNEAYEQLRESRDEMRKELAVAADYVTSLLPDPLKE-GDIQADWRFIPSASLGG 193 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 L ++ A Y LDV G L ++ + N L + L + + +L Sbjct: 194 DSFGYHWLDDDHFAMYLLDVCDHGVGSALLSV---SAMNVLRSQTLPDTD--FLKPDKVL 248 Query: 246 KQVNHLLRQANLPG-QFPLLVGYYHRELKNLILVSAGLNA--TLNTGEHQVQISNGVPLG 302 + +N + F + G Y + + L S G + GE + + G+ +G Sbjct: 249 EALNDSFQMDQQNNLYFTMWYGVYRKSDRTLTYSSGGHPPALLIAGGEAKQLRTPGMIVG 308 Query: 303 TLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 + + S + + G L Sbjct: 309 GMPDMTYTSDSVIVEPGARFFLYSDGVYELK 339 >UniRef50_B7RZ17 Stage II sporulation protein E n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RZ17_9GAMM Length = 393 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 64/336 (19%), Positives = 126/336 (37%), Gaps = 14/336 (4%) Query: 11 LIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDL--MICDIAMPRMNGLK 68 L+V+ + L S SSLG T D A E L PDL ++C++ M + Sbjct: 8 LVVDHDTARLEALASLVSSLGFTPENYTDANAAREYL-STRPDLDVILCEMDMEGLTWDS 66 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV-------F 121 ++ Q PV++ S + + +ALR G D ++PV D+ L+ + Sbjct: 67 AHRSLQEMDVQIPVILFSDEAQASRMMRALRFGASDFFVRPVDDVEALQRSLDRCVRQRQ 126 Query: 122 ACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQ-ELQPPVQQVISHCRVNYRQLVA 180 R++ R +++ A + +Q + P V++ ++ + + Sbjct: 127 VRRELEQSRQRLQAANTELRGTIHVLEQDQQAGRQVQMRMLPATPLVLNDYVFSHTVIPS 186 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 G D + ++ + F+ DV+ G + +LL+ LF + L + + Sbjct: 187 LYLSGDFTDYFTVGDHFVTFFMADVSGHGSSSAFTTVLLKNLFARKRSDFLRQNDDTILS 246 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGL---NATLNTGEHQVQISN 297 ALLK+ N + + ++VG + NL AG ++ + Sbjct: 247 PLALLKRANKEVMDLEVGKFATMVVGVLDMKSNNLRYSVAGHLPQPVLVSGDGARYLRGE 306 Query: 298 GVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 G +G + +A + + G L ++ Sbjct: 307 GSAVGIMDDASYEEHMIDLPDSFMLALFSDGILEIL 342 >UniRef50_A1WZ09 Response regulator receiver protein n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZ09_HALHL Length = 577 Score = 248 bits (634), Expect = 2e-64, Method: Composition-based stats. Identities = 65/331 (19%), Positives = 124/331 (37%), Gaps = 21/331 (6%) Query: 11 LIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLL 70 L+V+DE V LL++ + G + A +G +A+ D+++ DI MPRM+G + Sbjct: 13 LVVDDEPVNTMLLEAILGARGFHVITATNGEEAVARFREQPVDMILMDIMMPRMDGYQAT 72 Query: 71 EHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY-PS 127 I+ + PVL ++A + +A+ + G +D + KP+ + L + + L Sbjct: 73 RQIKAMDTEGFIPVLFVTALTDEQRLAQCVEAGGDDFVTKPISRVQ-LNAKIDSWLRTRG 131 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLV 187 ++++ V + + L + + A +++ R +Y+ AA G + Sbjct: 132 LYHTVVAQRDVLRSHQERLEREQETAERIVARATESSDLRAPGVRFHYQ--PAAILSGDI 189 Query: 188 LDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQ 247 L A +L D T G + L A+F + R LL Sbjct: 190 LLAARRPNGNLLILIGDFTGHGIGAAVGVPGLAAVFY--------DRVGRGAHPAELLDD 241 Query: 248 VNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGVPLGT 303 VN L ++ F + L + +AG+ + G Q S +PLG Sbjct: 242 VNEKLFRSLPADMFLTGALLEVDFHGHRLGVWNAGMPPVWLIRDGGVVQRFHSVDLPLGI 301 Query: 304 LGNAYLNQLSQ---RCDAWQCQIWGTGGRLR 331 + + + + G + Sbjct: 302 IRDTAPGRRQLEYMALTPGLHAFACSDGIVE 332 >UniRef50_Q3IED7 Putative response regulator n=3 Tax=Alteromonadales RepID=Q3IED7_PSEHT Length = 549 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 65/334 (19%), Positives = 125/334 (37%), Gaps = 21/334 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 IL+V+D+ + R LL + G T LA +GV AL++L D+++ D+ MP M+G Sbjct: 2 MHILVVDDQALNRILLQRLLTQEGYTVSLAYNGVAALKILSQTPIDIVLLDVVMPIMDGF 61 Query: 68 KLLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 + + I+ R + P++ I+A ++ A + L +G +D + KP + + L + A Sbjct: 62 ETAKIIKQRFNDIHLPIIFITALDDHASFERCLAVGGDDFIQKPFEKV-ILHAKIKAHCR 120 Query: 126 PSMFNSRVEEEERLF-RDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 + + +++ L + + Q +H N A Sbjct: 121 TRELSKKANQQKILLEEHQNQREREYEIIEHIFNNSLENQDQFKTHLDFN--LSPATMFN 178 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 G + +A +L D T G + AL +F ++++ +A + + Sbjct: 179 GDMFLVAQSPIGNLYCMLGDFTGHGLAAAIGALPASRVFYTMVKKGMA--------VHDI 230 Query: 245 LKQVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNATL----NTGEHQVQISNGV 299 +++N LL F K++ GL T + S + Sbjct: 231 ARELNLLLYNLLPGHMFCAATIIELSASGKSISAWLGGLPDTYLIDKQGNLKKTLESQHM 290 Query: 300 PLGTLGNAYLNQ--LSQRCDAWQCQIWGTGGRLR 331 LG L N + + + T G + Sbjct: 291 ALGILNNQEFEHEVIHFEVNEQTRLVLATDGIIE 324 >UniRef50_A4U2R5 Stage II sporulation E n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U2R5_9PROT Length = 630 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 66/341 (19%), Positives = 119/341 (34%), Gaps = 27/341 (7%) Query: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGA-TTVLAADGVDALELLGGFTPDLMICDIAM 61 Q ILIV+D +L++ +LG +A DG+ LE + PDL++ D+ M Sbjct: 240 QAFAQVSILIVDDNPFNCRMLEALIQTLGVGHIRVANDGIQGLEAITEHCPDLVLLDVMM 299 Query: 62 PRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 PRM+GL++ +R PVL I+A E+ G DV+ KP+ D + + Sbjct: 300 PRMDGLEMCRRLRTDHALSDLPVLFITALEDAKSRTACFAAGGNDVISKPI-DTDEVLAR 358 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQ-----QVISHCRVN 174 V L ++ +++ + + D AA L P + + + + Sbjct: 359 VRVHLQNALLMAKLNA------YRNRVRDEMEAARATQASLVPTDEHLNAIRRRTGLSIQ 412 Query: 175 YRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQ 234 +++ G + L D + G +F L L+ Sbjct: 413 GVVESSSELGGDFWTLFEAGPRHLGVLAADFSGHGLPAAF------NVFR--LHVLLSRL 464 Query: 235 NQRLPELGALLKQVNHLLRQANLPGQFPLLV-GYYHRELKNLILVSAGLNATLNT---GE 290 +R P ++ Q+N L+ G+F + G L A + G Sbjct: 465 PRRPPPPALMMAQLNRELKMLLKLGEFAAVFIGLIDLNEGTLTYAGAATPPPVLIDTLGR 524 Query: 291 HQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 G PLG + ++ + + + Sbjct: 525 ASFLDIAGPPLGAFTDPDYDEWCVPFPPGTSLLVYSDALVE 565 >UniRef50_C0GT23 Response regulator receiver modulated serine phosphatase n=1 Tax=Desulfonatronospira thiodismutans ASO3-1 RepID=C0GT23_9DELT Length = 376 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 66/339 (19%), Positives = 115/339 (33%), Gaps = 24/339 (7%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + ++LI ED + R L + DG +A++ F PD+++ DI MP M Sbjct: 1 MKKVKLLIAEDSSINRKFLIRLLGDE-FEIEESCDGEEAVDKFAAFAPDIVLLDIHMPVM 59 Query: 65 NGLKLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 +GL+++ HIRN +LV++ E+ +AL G D +LKP L+ V Sbjct: 60 DGLEVIRHIRNTSVDRDVFILVLTGEESTEVKVEALNQGANDFVLKPFVR-EELQARVRV 118 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 + + + + + A L L P +++ L + Sbjct: 119 AKRQVLILEELR------KAYAVISTEMDMVADLQARLLPRDGFEFPGIDLDWMYLPSGR 172 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 G D + + L F DV+ G +RA+F + L Sbjct: 173 ASGDYYDFFPVGPDTLRFVVADVSGHGARAAFIMNTVRAIFRMSWRNYFP--------LE 224 Query: 243 ALLKQVNHLLRQA--NLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGV- 299 ++ VN L Q LL + +L ++AG + ++ Sbjct: 225 QVVGFVNTDLCQIVGGEADFVTLLACDLNLGASSLSYINAGHCPGFFLADQEIMHEAQPN 284 Query: 300 --PLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSA 336 PLG ++ T G L+ Sbjct: 285 CRPLGIFP-LDISAGEITFKESLKAFLYTDGFYEWELTP 322 >UniRef50_Q310X6 Response regulator receiver (CheY-like) modulated serine phosphatase n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q310X6_DESDG Length = 381 Score = 244 bits (623), Expect = 4e-63, Method: Composition-based stats. Identities = 65/325 (20%), Positives = 113/325 (34%), Gaps = 21/325 (6%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILIV+D + R+ L S A +G AL PD+++ D+ MP MNGL++ Sbjct: 7 ILIVDDSRSVRNALASLLRKS-HAIEQAENGEQALASYARNRPDIILLDLNMPGMNGLEV 65 Query: 70 LEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 L IR D+T +L+++A ++ + L LG D L KP D+ LR V Sbjct: 66 LRTIREGFGDDETYILILTADDSSGTKTRGLSLGANDFLSKPF-DIAELRARVGVAERQR 124 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLV 187 ++ + R + + A L +L P + + + + G Sbjct: 125 KLTRQLVDYAR------RIQNEIDLVASLQSKLLPTATPYLQGIHIESLYEPSGEASGDY 178 Query: 188 LDIAALSEND-LAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 D + E + DV+ G ++R +F + L+ Sbjct: 179 YDFFPVQEGRKIRTVVADVSGHGARAAFIMSIVRTVFRITQSRYMPLDETVALLENHLMD 238 Query: 247 QVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQISNGVPLGT 303 + + + L ++AG + + E Q+ + LG Sbjct: 239 AIGDE------EDFVTVFTADVDFTDERLDYINAGHCPGILRQPSQEPQLLTGSMPLLGF 292 Query: 304 LGNAYLNQLSQRCDAWQCQIWGTGG 328 L A + S + T G Sbjct: 293 LK-APVKMRSIPFTKGSGLLLFTDG 316 >UniRef50_B1HNT1 Phosphoserine phosphatase rsbP n=74 Tax=Bacillales RepID=B1HNT1_LYSSC Length = 381 Score = 243 bits (622), Expect = 5e-63, Method: Composition-based stats. Identities = 57/344 (16%), Positives = 125/344 (36%), Gaps = 34/344 (9%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGAT-TVLAADGVDALELLGGFTP-------DLMICDI 59 IL+V+D QV +++ + G V + + + L P DL++ DI Sbjct: 1 MTILLVDDNQVNLFVIEKILKNAGYEHCVSLSSANELFDYLQLNEPNPTGSSVDLILLDI 60 Query: 60 AMPRMNGLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP ++G++ + I+ R ++ ++A E+ +A+AL +G D + KP+ L Sbjct: 61 MMPEVDGIEACKRIKQIERLRDIQIIFVTALEDKNKLAEALDIGGVDYITKPINK-TELL 119 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 + L + E+ + A + + L P R+ Sbjct: 120 ARIRVALRLKAELDWHTQHEKKIQY------ELDLATHVQRSLLSPPLNE-KDIRLEVSY 172 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 L +++ G + + ++ A LD+ G + L + + ++ +++ Sbjct: 173 LPSSNLAGDMYYWHKIDDHRYAIILLDMMGHGISAALVCMFISSVLREAVKQ-------- 224 Query: 238 LPELGALLKQVNH--LLRQANLPG---QFPLLVGYYHRELKNLILVSAGLN---ATLNTG 289 L + ++K++N L Q F + + K + ++AG A ++ Sbjct: 225 LNDPELVIKELNRYMALLQDGKDENLYYFTAIYLVIDTKQKTVEYINAGHPAGYALVDEK 284 Query: 290 EHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 +G + + + + + T G L M Sbjct: 285 TCIPLNQGSCAVGFFDEIKVKKQYIQYEKDLQIVMFTDGVLEAM 328 >UniRef50_D1R4M5 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4M5_9CHLA Length = 401 Score = 243 bits (622), Expect = 6e-63, Method: Composition-based stats. Identities = 65/348 (18%), Positives = 134/348 (38%), Gaps = 21/348 (6%) Query: 1 MTQPLVGK-QILIVEDEQVFRSLLDSWFSSL-GATTVLAADGVDALELLGGFTPDLMICD 58 ++QP K +L+++D+ + + S + ++ AL P +++ D Sbjct: 9 LSQPPSKKITVLLIDDQAIVAEAIQSMIGAEKDIDFYYCSEPTQALRKATEVAPTVILQD 68 Query: 59 IAMPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL 116 + MP ++GL L+++ R Q P++V+S+ E+ A+A LG D ++K + D L Sbjct: 69 LVMPEIDGLMLVKYFRANPATSQVPMIVLSSKEDPKVKAEAFALGANDYMVK-LPDKVEL 127 Query: 117 REMVF-ACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNY 175 + R E RL + + A AA+ ++ L P + + R ++ Sbjct: 128 LARIRYHSSNYIRLLERDEAYARLEESRNLLNAELAEAAQYVRSLLPKCLE--NPVRTSW 185 Query: 176 RQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQN 235 + + G L E+ Y LDV G L ++ ++ N L + LA+ + Sbjct: 186 EFIPSIGLGGDAFGYYWLDEDHFVMYLLDVCGHGIGAALLSI---SIMNVLQYQSLANID 242 Query: 236 QRLPELGALLKQVNHLLRQANLPGQ-FPLLVGYYHRELKNLILVSAGLNATL-------N 287 +L+ +N + F + G Y + + L+ S G + + Sbjct: 243 --FCNPATVLQSLNETFQMEKHNNMFFTIWYGIYSKSKRELLYASGGHPPGILIVRSGDH 300 Query: 288 TGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLS 335 + + G+ +G + + Y + G ++ S Sbjct: 301 MEDPIEIKTPGIVIGGIPDVYYQNAVCPIQPNSVLYVFSDGIYEIVKS 348 >UniRef50_A0LDH6 Response regulator receiver protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LDH6_MAGSM Length = 393 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 60/346 (17%), Positives = 132/346 (38%), Gaps = 24/346 (6%) Query: 1 MTQ-PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDI 59 M++ L+ +L+VED+ R ++ G + A +G +A++L T DL++ D Sbjct: 1 MSEISLIPATLLLVEDDPDQRIIMQRKLQQQGYKVICAENGEEAVDLYNNNTIDLVLMDA 60 Query: 60 AMPRMNGLKLLEHI--RNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 +P M+G + I G + PV++I++ EN + +A ++G E+ + KP+ L Sbjct: 61 QLPGMDGFEACFLITHTETGSRCPVMMITSLENSESVDRAFQVGAEEYVPKPIH-WKVLM 119 Query: 118 EMVFACLYPSMFNSRVEEEE----RLFRDWDAMVDNPAAAAKLLQELQPPVQQV--ISHC 171 + + + + V + + + + + + + +L++E+ ++Q I+ Sbjct: 120 QRIRRQIKSRRVHQEVVQARDALSQAYSEVTEVRERLSFERRLVEEIVSRMRQSAPINRH 179 Query: 172 RVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL 231 + G ++ A + D T G + L+ +F + + + Sbjct: 180 NLRTLFNPVEATSGDIILSAIRPDGAQHVMMGDATGHGLPAAIIGPLVSDIFYSMTNKGM 239 Query: 232 AHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNATLNTGE 290 A +L ++N L G F + +L +AG L + Sbjct: 240 A--------PAVILSELNSQLNAKLPTGIFLACCWISLNSSRDHLEYWNAGTPDILMVRQ 291 Query: 291 HQVQISN---GVPLGTLGNAYLN--QLSQRCDAWQCQIWGTGGRLR 331 ++ +PLG L + + A + G + Sbjct: 292 GKIFKRGQSCNIPLGVLRAGDFSPTLHTVSVQAGDQIYAYSDGIVE 337 >UniRef50_B7S1F6 Stage II sporulation protein E n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7S1F6_9GAMM Length = 595 Score = 240 bits (613), Expect = 5e-62, Method: Composition-based stats. Identities = 65/349 (18%), Positives = 119/349 (34%), Gaps = 35/349 (10%) Query: 11 LIVEDEQVFRSLLDSWFSSLG-ATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 L+V+D+ + R ++ L A + DG++A ++L D+++ D+ MP M+GL+L Sbjct: 22 LVVDDDPMVRKIVTRGLGQLNPAKVLEVEDGLEAQKVLQTMAIDVVVTDVVMPNMDGLEL 81 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC------ 123 ++ + Q +++S E +AL+ G D L KP ++ R+R V Sbjct: 82 MKWAQEHCPQPLWIILSGLETFDAAVEALQSGAFDYLPKP-PEVPRVRVAVRNAMDHIEL 140 Query: 124 -LYPSMFNSRVEEEE-RLFRDWDAMVD--------------NPAAAAKLLQELQPPVQQV 167 + +E+ +L D + + A + + L P V Sbjct: 141 ERERKRLYAELEDSNSQLAEKVDQLQQVCHVLQNQAAVIQADLNRAEIIQRALLPQEPPV 200 Query: 168 ISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL 227 I + + G D L E L D G + ++ LF L Sbjct: 201 IPGWCMETLYRPGSSVGGDFYDAVMLDEKHLGLVIADAAGHGVAAAMLSV----LFKLRL 256 Query: 228 QEQLAHQNQRLPELGALLKQVNHLLRQAN--LPGQFPLLVGYYHRELKNLILVSAGLNAT 285 ++ H+ + +L+++N L + L SAG Sbjct: 257 KQLDRHEKVLM--PNQVLERLNSRLYDMLSAPGAFITAVYVLLDLHSGRGWLASAGHTPC 314 Query: 286 LNT---GEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + G + G LG A + + T G L Sbjct: 315 VLNPAKGSPLMLERTGPALGLEPGAGYEEHEFTLTDGDRMMLYTDGVLD 363 >UniRef50_A8ZSN7 Response regulator receiver protein n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZSN7_DESOH Length = 371 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 59/329 (17%), Positives = 113/329 (34%), Gaps = 25/329 (7%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 IL+V+D + LL + + G T+ A DG A +L PD+++ D+ MP +G + Sbjct: 6 TILVVDDNLLNLKLLSTTLENHGYKTITAVDGPTARQLAQTEKPDIILLDVKMPGEDGFE 65 Query: 69 LLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 ++ ++N PVL +S + LG D + KP L L V L Sbjct: 66 VIRQLKNDPATGGIPVLFLSGVIELESKLTGFELGAVDYITKPFHPLEVL-ARVRLHLKL 124 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 S+ S + + D + + + G Sbjct: 125 SIATSSLISNQ---------ADKLRQITEAQTAML-TTPDNQPGAGFGVYYCALEEAGGD 174 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 D+ +S++ ++ D + ++AL L + +K Sbjct: 175 FYDVLPISDDIYGYFVADFSGHDIKTSYLISSVKAL--------LKQNCTPIYRPSESMK 226 Query: 247 QVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGVPLG 302 +N +L + +F +R+ KNL ++SAG + GE G +G Sbjct: 227 LINDVLVKILPEDKFLTSCYACLNRKTKNLTIISAGHPPVVYLPAKGEPSFIHLQGDVMG 286 Query: 303 TLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + + + + + + G + Sbjct: 287 SFEDVSFGREAMKVKPGDRFYIYSDGLIE 315 >UniRef50_Q7NSC1 Probable two-component response regulator n=1 Tax=Chromobacterium violaceum RepID=Q7NSC1_CHRVO Length = 402 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 69/341 (20%), Positives = 124/341 (36%), Gaps = 21/341 (6%) Query: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 P+ IL+VED R ++ + LG A +GV+A+E PDL++ DI MP Sbjct: 13 DPMSSTTILLVEDSATNRYFIEQFIQELGYRCASATNGVEAVEYCRNQVPDLVLMDIIMP 72 Query: 63 RMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 M+GL+ +R P++ +++ + + L+ G +D L KPV + L + Sbjct: 73 EMDGLQATTELRRLFGEHWVPIIFLTSLNELESVVSGLKAGGDDYLAKPVS-FDLLSAKI 131 Query: 121 FACLYPSMFNSRVEEEE-RLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLV 179 L + +++ ++ RL + + A +L++ L H Sbjct: 132 HVFLRIAQMQNQINQDAIRLEKYYQENEFEQQLALELIERLVRLRTSRPGHVWQ--YLNP 189 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 AA G ++ I D T G ++AL F+ + + Sbjct: 190 AAGFNGDLIIICQPPGGGEHIMLADCTGHGLTAAISALPAIDCFHEMTEAGC-------- 241 Query: 240 ELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKN-LILVSAGLNATL---NTGEHQ-VQ 294 ++ A+ + VN L + G+F + + G+ L GE + Sbjct: 242 DMAAIARGVNQKLHKLLPGGRFVAAALIAIDADGRHARVWNGGVPCVLLFNEKGEVEARC 301 Query: 295 ISNGVPLGTLGNAYLNQLSQRCD--AWQCQIWGTGGRLRLM 333 S PLG L + Q Q + + G Sbjct: 302 KSAHPPLGVLPAEAFDDSMQTLAWLPEQALVVSSDGITEAK 342 >UniRef50_C5S8G9 Response regulator receiver protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5S8G9_CHRVI Length = 408 Score = 240 bits (612), Expect = 7e-62, Method: Composition-based stats. Identities = 73/330 (22%), Positives = 127/330 (38%), Gaps = 22/330 (6%) Query: 11 LIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLL 70 LIV+DE R LL S G T+ AA+G +ALE PD++ D MP M+GL+ Sbjct: 26 LIVDDEVANRRLLGSMLVKEGFRTLEAANGREALECFEQERPDIVFMDALMPEMDGLEST 85 Query: 71 EHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 I+ + PV+ ++A ++ + ++ G +D L KP L RLR V A Sbjct: 86 RRIKRLTGEDFVPVIFLTAVKDEQCLLSCIKAGGDDFLAKPFT-LTRLRARVLAMERVRD 144 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCR--VNYRQLVAADKPGL 186 + ++RL ++++ KL + + + + C + + A G Sbjct: 145 LQRTLAAKQRLLE---TLLEHDHEEKKLAERVWTQAVKYHNVCVPAIGMVERPATIFNGD 201 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 ++ + L + L D T G + AL + F+ + + ALL Sbjct: 202 LVLMHYLPDGGLRILLGDFTGHGLAATVGALPVADTFHAMTTKGFDDV--------ALLS 253 Query: 247 QVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNAT---LNTGEHQVQISNGVPLG 302 ++N L + +F L + G+ A G + S+ +PLG Sbjct: 254 EINQKLYRLLPTERFMAAYLISISEGGDTLSWWNGGMPAAHLCTAAGRIE-LPSHALPLG 312 Query: 303 TLGNAYL-NQLSQRCDAWQCQIWGTGGRLR 331 L + + A + + G L Sbjct: 313 ILPELHDPVMRQVQITAGDRLLLMSDGLLE 342 >UniRef50_D0RPA8 Regulatory components of sensory transduction system n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RPA8_9RICK Length = 536 Score = 239 bits (611), Expect = 9e-62, Method: Composition-based stats. Identities = 71/348 (20%), Positives = 136/348 (39%), Gaps = 41/348 (11%) Query: 1 MTQPLVGK--------QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTP 52 M +PL + +ILIV+D + +++ G T+ DGV+A+ L Sbjct: 158 MIKPLAKQDKNNLITGKILIVDDNKSNCEMIERQLQREGHKTMTCFDGVEAINELNKSDY 217 Query: 53 DLMICDIAMPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPV 110 D ++ D+ MPR NG ++L ++ PV++IS + I + + GV++ L KP+ Sbjct: 218 DTVLLDVLMPRKNGYEVLMEMKQSFKLKDIPVIMISGFKEEDTIVRCIESGVDEYLTKPI 277 Query: 111 KDLNRLREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISH 170 L+ +++ L F D + AA + + L P + Sbjct: 278 NS-TLLKAKIYSSLERKKFR-------------DREKHDLQVAADVQKSLIPSEAYFPDN 323 Query: 171 CRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ 230 + + A G D + + AF DV+ G + + ALF L + + Sbjct: 324 FYAS--NIAAKGVSGDFYDCIDIDSDRYAFILADVSGKGMHAGILMAKTSALFRSLTKIE 381 Query: 231 LAHQNQRLPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL--- 286 + + +VN L + + G F L++G Y++++K + ++AG + Sbjct: 382 --------KNIQKIAWRVNKELCETSSQGMFVTLVMGIYYKKIKAIEFINAGHEPVMIAK 433 Query: 287 NTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQC---QIWGTGGRLR 331 + G S P+G + + + Q + + T G Sbjct: 434 DNGSFVDLESKSPPMGMMEIELNDFVLQTYNPKNEKAFFLTFTDGVTE 481 >UniRef50_Q21IP0 Stage II sporulation E n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IP0_SACD2 Length = 575 Score = 239 bits (610), Expect = 1e-61, Method: Composition-based stats. Identities = 65/341 (19%), Positives = 134/341 (39%), Gaps = 21/341 (6%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M ++LI ED R +L + S+ G + DGV+A+ PD+++ D+ Sbjct: 1 MDVEQHALKVLIAEDSAPDRLILATIVSNAGHIAIPVTDGVEAVTAFKAERPDIILMDVL 60 Query: 61 MPRMNGLKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP M G++ + IR P+L +++ + + + L G +D + KP + L+ Sbjct: 61 MPNMGGVEAAKKIREIARDELVPILFLTSLSDTDSLVECLEAGGDDFVSKPYNRV-VLQS 119 Query: 119 MVFACLYPSMFNSRV-EEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 + A ++ V ++ + + R + ++ A ++ ++ +S+ R Y Sbjct: 120 KIKAFGRMREMHTTVAKQRDEIERHHNHLIQEQRVAKQVFDKIAHSGCLDLSNIR--YSM 177 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 A G VL ++ D T G + ++ L F G++++ A + Sbjct: 178 SPLAVFNGDVLVAEVSPSGNMIILLGDFTGHGLPAAVGSIPLATTFYGMVRKGFALPD-- 235 Query: 238 LPELGALLKQVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNAT----LNTGEHQ 292 +L+++NH L + G F + + + + GL + T + Sbjct: 236 ------ILREINHKLHEILPVGFFCCATCIELNFAEQTMFTWTGGLPPSYLYRYKTDSYD 289 Query: 293 VQISNGVPLGTLGNAYLNQLSQR--CDAWQCQIWGTGGRLR 331 + S+ +PLG L ++ R D + G Sbjct: 290 IINSSNLPLGVLASSTFKAEPTRIELDIGDRLYMWSDGVFE 330 >UniRef50_Q2W139 Chemotaxis response regulator protein-glutamate methylesterase n=2 Tax=Magnetospirillum RepID=Q2W139_MAGSA Length = 625 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 63/325 (19%), Positives = 113/325 (34%), Gaps = 26/325 (8%) Query: 18 VFRSLLDSWFSSLGA-TTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLLEHIRNR 76 + R L+++ +G G L + PDL++ D+ MP M+G ++ +R Sbjct: 260 MNRVLMETLLRRMGVGQVETVESGEKGLAAIEREKPDLVLLDVMMPGMDGFEMCRRLRRL 319 Query: 77 GD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMFNSRVE 134 + PV+ ++A + AD +G D++ KP+ D N + V L R+ Sbjct: 320 HPLTELPVIFVTALDGPADRNACFAVGGSDMVAKPI-DANEVAARVGVHLRLGQAMDRLT 378 Query: 135 EEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVIS-----HCRVNYRQLVAADKPGLVLD 189 D + + AA L P ++ S V+ R +++ G Sbjct: 379 A------YQDRVHEELRAARGAQAALMPTSAELSSIRIRQGLVVDGRIESSSELGGDFWT 432 Query: 190 IAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQVN 249 + N + D T G L L + L +R+P ALL+ +N Sbjct: 433 VLPAGPNQMFLLVADFTGHGPVAAFNVFRLHLLLSRL--------PRRMPTPSALLEYLN 484 Query: 250 HLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNA--TLNTGEHQVQISNGVPLGTLGN 306 L+ GQF E + A + GE + ++G PLG + Sbjct: 485 LELKAVLRSGQFAAAFAALIDVEEGVMTYAGAASPPAVLVVDGEVRFLDADGPPLGAFVD 544 Query: 307 AYLNQLSQRCDAWQCQIWGTGGRLR 331 A + + + + Sbjct: 545 AEYEESRIALPRGAALLAYSDALVE 569 >UniRef50_B5EE19 Response regulator receiver modulated serine phosphatase n=2 Tax=Geobacter RepID=B5EE19_GEOBB Length = 396 Score = 238 bits (608), Expect = 2e-61, Method: Composition-based stats. Identities = 64/346 (18%), Positives = 101/346 (29%), Gaps = 28/346 (8%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + IL+V+D + R ++ G A D AL L G L++CDI MP N Sbjct: 1 MRTTILVVDDSKSMRRIIVDSLKDEGYECRSAEDVDTALIALDGCEFSLVLCDIEMPGRN 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G+ LL IR T V++++ + + + LG D L+KP L RL V L Sbjct: 61 GIFLLNEIRTTRPDTYVVMLTGVTDPETVMHCIHLGANDYLMKPFT-LERLLLTVRNALQ 119 Query: 126 PSMFNSRVEEEERLFR---------------DWDAMVDNPAAAAKLLQELQPPVQQVISH 170 + + + A + L P Sbjct: 120 QRKLYLEHRSYQETLEQKVLEQTEQIRASLLEKALITKEMEIAGAIHAALVPRFIPSTPR 179 Query: 171 CRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ 230 L A G DI + + DV L LR Sbjct: 180 LSFAAHYLSAGPLGGDYFDIFHRGDGLVDVVIADVAGHNIGSALIVAQLRGALR------ 233 Query: 231 LAHQNQRLPELGALLKQVNHLLRQANLPG--QFPLLVGYYHRELKNLILVSAGLNATL-- 286 + +LK +N + +L L AG N + Sbjct: 234 -VQASAARLGCAEMLKLINESFYEDLTGAEIFVSMLYLRLDEVSMQLQYACAGHNPGIML 292 Query: 287 -NTGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 G + G+ +G + + +A + T G + Sbjct: 293 RADGSVLELDAEGMIIGVAREVDFEEKALPLEAGSRLMLYTDGIVE 338 >UniRef50_C6CXV6 Response regulator receiver modulated serine phosphatase n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXV6_PAESJ Length = 381 Score = 237 bits (606), Expect = 4e-61, Method: Composition-based stats. Identities = 50/342 (14%), Positives = 126/342 (36%), Gaps = 34/342 (9%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGAT-TVLAADGVDALELL--------GGFTPDLMICD 58 I+IV+D + ++ + G + A+ + ++L +L++ D Sbjct: 1 MSIIIVDDNTTNQLIIQTILKKAGYQNLLTASSAHELYDMLGIGGSTTSADLDVELILMD 60 Query: 59 IAMPRMNGLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL 116 + MP ++G++ + R P++ ++A + +A+AL G D ++KP+ + L Sbjct: 61 MMMPDIDGIEACRTVLQDCRYKDIPIIFVTAVGDSNKMAEALDAGACDYVMKPINRM-EL 119 Query: 117 REMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYR 176 + + + R +E ++ R N A ++ + + R+N Sbjct: 120 LARIRSSMRLKQEIDRHKERDKNMRY------NLELAKQVQLSVLSTEIDD-ENMRINAA 172 Query: 177 QLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQ 236 +++ G + + +N LD+ G + L + + ++ Sbjct: 173 YQPSSELAGDFYNWYRIDKNRYGVILLDMMGHGISSSLVCMYISSVLR--------DTIT 224 Query: 237 RLPELGALLKQVNH-----LLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN--TG 289 R+ ++ ++ ++N ++ + F + E K + V+AG + G Sbjct: 225 RMNDMEQVMHELNRYMNQLHIKDELMNYYFTAIYLVLDVENKTIEYVNAGHPPGIAFLDG 284 Query: 290 EHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + + +G L++ S + + + T G Sbjct: 285 KPALLEPCCSAIGLFNKLKLSKGSLQYEREAGIVLYTDGLTD 326 >UniRef50_Q2SPR3 Serine phosphatase RsbU, regulator of sigma subunit n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SPR3_HAHCH Length = 560 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 62/334 (18%), Positives = 125/334 (37%), Gaps = 22/334 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 IL+V+D+ R L+ G A G ALE+ D+++ D+ MP MNG Sbjct: 1 MNILVVDDDMYSRQLMGFVLEEGGHKCEFAESGEQALEIWREQGADVVLMDVLMPGMNGY 60 Query: 68 KLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 + I+ D P++ ++A ++ + + L +G +D L KPV + L+ + A Sbjct: 61 EAARIIKAEAGQDHIPIVFLTALDDDRALVECLSIG-DDFLGKPVNFVT-LQAKIRAHSR 118 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAK-LLQELQPPVQQVISHCRVNYRQLVAADKP 184 N +V E+ R + V + ++ + + R Y + Sbjct: 119 TLALNRQVVEQNRELAYFHTKVQAEHEMTQHIMTAALKLSAKDVYGIR--YHCTARSTFN 176 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 G ++ + + D T G + ++ + F+ + + L + + Sbjct: 177 GDLVLLKEKRDGGAYVLVGDFTGHGLAASVGSIPVAQAFSTMCERNL--------SVSEI 228 Query: 245 LKQVNHLLRQANLPGQ-FPLLVGYYHRELKNLILVSAGLNAT-LNTGEH---QVQISNGV 299 ++N +LR+ P F + + + L + GL + +G++ +V S + Sbjct: 229 SLELNKILRRFLPPTMFFAACLLEINSTRSKIELWAGGLPDAFIVSGDNKIRRVIHSAHM 288 Query: 300 PLGTLGNAYLNQLSQRCD--AWQCQIWGTGGRLR 331 PLG + ++ A T G Sbjct: 289 PLGIMEMEEFESWTETISVTAEDRLYIYTDGITE 322 >UniRef50_C4XN65 Response regulator receiver protein n=2 Tax=Desulfovibrio RepID=C4XN65_DESMR Length = 380 Score = 234 bits (597), Expect = 4e-60, Method: Composition-based stats. Identities = 70/342 (20%), Positives = 118/342 (34%), Gaps = 33/342 (9%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSL-GATTVLAADGVDALELLGGFTPDLMICDI 59 MTQ +LI +D +FR +L +SL G + AA G+DA++L PDL++ D+ Sbjct: 1 MTQ------VLIADDNAIFREVLKRHVASLFGYDVIEAATGLDAVDLAETRHPDLILLDL 54 Query: 60 AMPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP ++G++++ IR P++ +SA + A+AL G D + KP + L Sbjct: 55 VMPGLDGIEVIRRIRANPRLADVPIIFLSAETDRRVWAEALSAGANDFMPKPYHR-SELA 113 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 + L + + + L A + ++L P + S Sbjct: 114 ARINLHLKLASLGQELRRQNDLL------TRERYLAGCVQRQLLPRDLE-FSGLESAAVY 166 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 G D A + D++ G + + + L Q L Sbjct: 167 QAQEQVGGDFYD-AWDDGAAVYVLMADISGHGASAAMLMAACKGYLVSLRQAGLG----- 220 Query: 238 LPELGALLKQVNHL-----LRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQ 292 L+ +N + L + + R L +VSAG G Sbjct: 221 ---PVELVASLNAMLCDLLLGGDLDNMFMTMALCRIDRAAPLLTVVSAGHVPVYVLGRSG 277 Query: 293 V--QISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 + S G LG L + + T G L Sbjct: 278 LTELPSQGPALGILPDCAWTPQTTTFAPGDTLFLYTDGLTEL 319 >UniRef50_Q2BJS2 Sensor histidine kinase/response regulator n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJS2_9GAMM Length = 571 Score = 233 bits (594), Expect = 1e-59, Method: Composition-based stats. Identities = 61/333 (18%), Positives = 116/333 (34%), Gaps = 27/333 (8%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 +++L+V+D ++ R +L S LG V A G+ A+++ P L++ D+ MP M+G Sbjct: 14 DERVLVVDDMRLNRQILGQMISDLGLQPVYAETGLQAIQIYEEQKPSLILMDVNMPEMDG 73 Query: 67 LKLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 ++ I+ P++ +S E I +A+ G +D + +P L ++A Sbjct: 74 IEATRQIKELAGDRFIPIIFVSGAEGQDVIREAIDAGGDDFIQRPF-PFELLEGKIYALR 132 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 + +V L A +LL + R++ + A Sbjct: 133 RIAQLYRQVNRLNHL------RAREEEVAEQLLSGAVESANAALDQIRIH--KQPAETFS 184 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 G V A +L D T G + AL L F + + + + Sbjct: 185 GDVQLSAFRPNGELNVLLGDFTGHGLTSTVGALPLSETFRAMTAKGY--------DAEEI 236 Query: 245 LKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQISNGVPL 301 + Q+N L++ G F + + + + GL + S PL Sbjct: 237 VGQINRKLQRLLPTGMFLATGIVTLSQDGSAKIWNGGLPDIMVVSKGKVVHRTESKHPPL 296 Query: 302 GTLGN---AYLNQLSQRCDAWQCQIWGTGGRLR 331 G L + + + G + Sbjct: 297 GILPQLKGLHFE--HTTLQPDDHILLLSDGVIE 327 >UniRef50_Q7NUQ3 Probable two-component response regulator n=1 Tax=Chromobacterium violaceum RepID=Q7NUQ3_CHRVO Length = 566 Score = 230 bits (587), Expect = 6e-59, Method: Composition-based stats. Identities = 63/333 (18%), Positives = 119/333 (35%), Gaps = 21/333 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +L+ ED + R L+ +G A +G A+E PD+++ D+ MP M+G + Sbjct: 6 TVLVAEDVEPTRLLMGLVIEEMGHQVWYAENGQQAVEQCRRELPDMVLMDMMMPVMDGHE 65 Query: 69 LLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 IR P++ +SA + +L +G +D L KP+ L L + Sbjct: 66 ATRQIRQLCGDRWLPIIFLSARSDEEAHISSLDVGADDYLPKPIN-LTMLAAKIRVMQRI 124 Query: 127 SMFNSRV-EEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 S R+ ++ ++L + + A +L + +Q + V Q A G Sbjct: 125 SEMQRRISDDSQQLVSYYHSNEREQLFAKHVLDSIVGSEEQDLPG--VYSWQQSAEQFSG 182 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 VL A L D T G + L+ L +F + + + + Sbjct: 183 DVLARALSPTGQLCVMLADSTGHGLSAALSCLPAVDIFYAMARRGFPLTS--------MA 234 Query: 246 KQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL----NTGEHQVQISNGVP 300 +++N L + G+F + EL + + + G+ + + S P Sbjct: 235 REINAKLNRLLPVGRFVAAALITIDWELGCVEVWNGGIPCVMFVDDEGCPMKEWKSQYPP 294 Query: 301 LGTLGNAYL--NQLSQRCDAWQCQIWGTGGRLR 331 LG L + + + + G Sbjct: 295 LGILSPDEFCWGTETYFWEQSGQLVVCSDGLTE 327 >UniRef50_A0LAN5 Response regulator receiver protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LAN5_MAGSM Length = 378 Score = 229 bits (585), Expect = 9e-59, Method: Composition-based stats. Identities = 61/343 (17%), Positives = 116/343 (33%), Gaps = 25/343 (7%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT-PDLMICDIA 60 ++ IL+V+D +L + LA G AL PDL++ D+ Sbjct: 5 SEAEAKPVILVVDDVPQNLDVLKGGLADA-YQVRLAVSGERALRAAQIEPLPDLILLDVM 63 Query: 61 MPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP ++G ++ ++ + PVL ++A M D L LG D + KP+ + ++ Sbjct: 64 MPDIDGFEVCRQLKANPLTAEIPVLFVTAKSEMVDELHGLALGAVDYISKPIS-IPIVQA 122 Query: 119 MVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQL 178 V L N ++ R + ++ +++ +++ H R Y Sbjct: 123 RVRTQLALRRANCMLQ------RHTEQLLRERNVIERIIIKMRDADHLNQRHLR--YVIS 174 Query: 179 VAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRL 238 G +L L + D T G + L+ +F+ + + Sbjct: 175 PVEKTAGDMLLATLLPDGRQWVLLGDFTGHGLPAAIGGPLVAYIFHTMATQN-------- 226 Query: 239 PELGALLKQVNHLLRQANLPGQFPLLVGY-YHRELKNLILVSAGLNATLN-TGEHQVQIS 296 + A L+Q+N L Q F +L G+ + + G S Sbjct: 227 GQAIACLEQLNEQLCQRLPREFFLAFTLVEVSPARDTAMLWIGGIPSVYHFAGALHSIDS 286 Query: 297 NGVPLGTLGNAYLN--QLSQRCDAWQCQIWGTGGRLRLMLSAE 337 +PLG + A + T G + ++ Sbjct: 287 TLLPLGIFADECFANPSARLSLQAGERLYVCTDGIVEASGKSD 329 >UniRef50_Q04UP8 Serine phosphatase, regulator of sigma subunit n=6 Tax=Leptospira RepID=Q04UP8_LEPBJ Length = 376 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 63/337 (18%), Positives = 115/337 (34%), Gaps = 24/337 (7%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 +Q +L V+D ++ L+ LG A DA +L D+++ D++M Sbjct: 3 SQDYSLYTVLAVDDSEINLKLIVHTLKPLGFQIFTAESAADARSVLLTNRVDVLLLDVSM 62 Query: 62 PRMNGLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 P +G +R R P+L I+ +A+ G +D + KP + L Sbjct: 63 PDQDGFSFCRELREIERFKLLPILFITGINREVGFDEAISHGGDDFIQKPFQP-KELIAK 121 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLV 179 + A + + V E++R + A K+ QEL P + + V+ Sbjct: 122 IRAFIRIKILQDEVLEQKRNYE------RELIMARKVQQELLPEKELEWNGVSVSTIFQP 175 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 G D A + + L + D + G + L A +L+ + L Q + Sbjct: 176 LMQIGGDYTD-AWIENDSLHIFIADCSGHGPSAALLAAMLKMQVSSLSPNQSLQEK---- 230 Query: 240 ELGALLKQVNHLLRQANLPGQ-FPLLVGYYHRELKNLILVSAGLNATL--NTGEHQVQIS 296 ++ + H L + G R+ N + G + GE + Sbjct: 231 -----VQTLRHNLEKILPDEFSITFFYGIL-RKDLNFEYSNGGHPPPILYQNGEVTILSG 284 Query: 297 NGV-PLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 G + N S R + + T G + Sbjct: 285 MGPLIIPIEINVKEEFKSVRFEKGSYLLLYTDGATEI 321 >UniRef50_Q21G04 Response regulator receiver n=2 Tax=Alteromonadales RepID=Q21G04_SACD2 Length = 563 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 59/333 (17%), Positives = 115/333 (34%), Gaps = 22/333 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL-GGFTPDLMICDIAMPRMNG 66 +IL+V+D R LL G + A G A+++ DL++ D+ MP MNG Sbjct: 1 MKILVVDDHAYNRDLLQFILEDEGHSCCEADSGEAAVKMFLENEDIDLILMDVNMPLMNG 60 Query: 67 LKLLEHIRNR--GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 ++ E I ++ ++A ++ + + L G +D + KPV + + L + A Sbjct: 61 IEATEKISEIKGPRAVTIIFVTALDDSDILIQCLNAGGDDFVPKPVNE-SILISKINAHA 119 Query: 125 YPSM-FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 + ++ L + + + + I V + Sbjct: 120 RNIENYKQLLDAHNTLDMHNKNIRREHEIVENVFRNSL--TRSNIECDNVVSYSSPMSMF 177 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGA 243 G + A F D T G + + +L + +F + + A Sbjct: 178 NGDLTLTAPSPSGGQYFLLGDFTGHGLSAAIGSLPVMNVF--------FDNAAKQVSVSA 229 Query: 244 LLKQVNHLLRQANLPGQ-FPLLVGYYHRELKNLILVSAGLNATL----NTGEHQVQISNG 298 L ++N+ L + G F +G+ + L + S G+N L + Sbjct: 230 LAVEINNQLYRILPMGMFFCAAIGHLDKTGTQLTVWSGGMNDALLLSSDNKSITAIPGAH 289 Query: 299 VPLGTLGNAYLNQLS--QRCDAWQCQIWGTGGR 329 +PLG L + + + + T G Sbjct: 290 MPLGILRPEEFDDRAQLHELEKNAKIFFYTDGV 322 >UniRef50_Q60AL6 Response regulator n=1 Tax=Methylococcus capsulatus RepID=Q60AL6_METCA Length = 389 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 56/330 (16%), Positives = 112/330 (33%), Gaps = 20/330 (6%) Query: 10 ILIVEDEQVFRSLLDSWFSSL-GATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +L+++D+++ + +D AL P L++ D+ MP ++GL Sbjct: 18 VLLIDDQRIIGEAVRRLLKDETDIEFHFLSDPTQALAEAERVRPTLILQDLVMPDVDGLD 77 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 L+ R P++V+S+ E A A+A G D L+K L + V Sbjct: 78 LVMRFREHPASRNVPLIVLSSKEEPAVKAEAFARGANDYLVK-------LPDRVELIARL 130 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 ++ + + + A+ + AA ++ P R + + +A G Sbjct: 131 RYHSNAYIAQLQRDEAYGALAADLHEAASYVRSQLPAPIAS-GPIRSAWEFVPSATLGGD 189 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLK 246 + AF+ LDV G L ++ + + + L + + ++L Sbjct: 190 SFGYFDVDPGHFAFFLLDVCGHGVGPALLSV---SAMAAISRRTLPEVD--FLDPTSVLG 244 Query: 247 QVNHLLRQANLP-GQFPLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQISNGVPLG 302 +N F L G + R + + SAG + +P+G Sbjct: 245 ALNEAFAMEKHNLLYFTLWYGVFERATRTVRYASAGHPPAIVVAAGSAPAELRQQAMPIG 304 Query: 303 TLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 + +A R + G + Sbjct: 305 VMSDAVFASAEFRLPPASAVYLFSDGIYEV 334 >UniRef50_B0SD70 Receiver component of a two component response regulator n=4 Tax=Leptospira RepID=B0SD70_LEPBA Length = 370 Score = 227 bits (579), Expect = 5e-58, Method: Composition-based stats. Identities = 51/341 (14%), Positives = 116/341 (34%), Gaps = 22/341 (6%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M++ +ILI++D+ L+ + LG + + LE ++ D+ Sbjct: 1 MSEYSFKPEILIIDDDTEICETLELIVNGLGYFVRYFTNPLQGLEYFEREKNPIVFLDVN 60 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP+ +GL++L I+ +T VL+++ ++ + +L D +LKP + + Sbjct: 61 MPQTSGLEVLPKIKAIDSKTQVLMMTGEHDIQTVVSSLYHRASDFILKPFH-----TKSI 115 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 A + + +++ +++ + AAK+ + + +++ Sbjct: 116 EAAISRAFEYYNFLKDKE--SMDESIKRDLRLAAKIQSK---TMNLPTLKYKIHSEIKPV 170 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 + G + L + D+ G L A+L+ + L + Sbjct: 171 SFVSGDFFQVIPLDVDRTLILMGDIEGHGVTSGLIAILMTTIHKELAR-------TTTVA 223 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN-----TGEHQVQI 295 LL ++N L + + K + G + +Q Sbjct: 224 PSELLSRLNRELCNEIGTHSMTAISIVVNHTEKKITYARGGHPFPIVFPKDSRAPMILQD 283 Query: 296 SNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSA 336 +G LG L + + + D+ + G L Sbjct: 284 QSGQILGILKDMEFAENQIQVDSRDILFLYSDGLLASSTHP 324 >UniRef50_A0KNX4 Response regulator receiver domain n=2 Tax=Aeromonas RepID=A0KNX4_AERHH Length = 323 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 88/329 (26%), Positives = 151/329 (45%), Gaps = 17/329 (5%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M++ G +IL+VEDE VFR L ++ + GA A DG++ L + PD+++CD+ Sbjct: 1 MSK--AGLRILVVEDEAVFRHSLVNYLAHDGACVFQAEDGIEGLSAAALYHPDVVLCDLN 58 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP M+G +++ + R PV+VISA M + +ALR G D LLKP+ D ++R + Sbjct: 59 MPNMDGHEVIACLTARYPHIPVIVISAQSKMEAVERALRAGARDFLLKPISDFGQVRRSI 118 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 CL N ++ L D ++ AA +LL L+PP Q +V + Sbjct: 119 EQCL---STNHGYGQQLELMEHIDFFREHDQAATRLLAWLKPPGLQEWGPWQVTF----- 170 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 L + ++ L +++ G + L+R+L N ++ ++ L + Sbjct: 171 EGMGNLFIPDTFKVDDKLLVLVMELPILGVDAAFCGALVRSLMNAPYRQFQRGESLLLTQ 230 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP 300 LL +N L ++ L F + + +E L+ +AGL T H + S G+P Sbjct: 231 PHRLLDYLNLQLVESGLRHSFAMAALLFDQEDG-LVFANAGL-----TSPHWLVRSGGLP 284 Query: 301 LGTLGNAYLNQLSQRC-DAWQCQIWGTGG 328 LG L ++ + + + Q G Sbjct: 285 LGLLRTSHYALHRRSWHEPFDLQFRSDSG 313 >UniRef50_Q01VL2 Response regulator receiver modulated serine phosphatase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01VL2_SOLUE Length = 409 Score = 225 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 63/332 (18%), Positives = 109/332 (32%), Gaps = 33/332 (9%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP-----R 63 ++LI +D+ L G V A LE + G DL++ D+ Sbjct: 45 RVLICDDQPDVLEALRLLLKGQGWQAVTADSPKSLLETVRGGGFDLILTDLNYTRDTTSG 104 Query: 64 MNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G+ LL + +G+ PV+V++A N+ +A+R G D + KP + NRL + Sbjct: 105 QEGMDLLASLEAQGNAVPVVVMTAWGNVDLAVEAMRRGACDFVQKPWDN-NRLLATIRKQ 163 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 P AA + Q+L P + + + A + Sbjct: 164 AEPGRRRK----------------SELEIAANVQQKLFPRKLRRLESLDYAGHCMPAREV 207 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGA 243 G D + ++ + F DV+ G L L+A F L Sbjct: 208 GGDYYDFLEMPDSTIGFVLGDVSGKGVPAALLMANLQACFRS-------QPPHALQRPAE 260 Query: 244 LLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGV 299 +L VN + +F L+ Y + + V+ L +GE ++ S Sbjct: 261 VLGMVNRHFFDSTAAERFATLVFASYDDRTRKVRYVNCAHCPPLLLRASGELEMLDSTAT 320 Query: 300 PLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 LG + + + G Sbjct: 321 MLGAFTKWTCTEGETALRTGDTLLLYSDGVTE 352 >UniRef50_Q1ZRM9 Hypothetical response regulator n=5 Tax=Photobacterium RepID=Q1ZRM9_PHOAS Length = 354 Score = 223 bits (570), Expect = 6e-57, Method: Composition-based stats. Identities = 106/345 (30%), Positives = 170/345 (49%), Gaps = 28/345 (8%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L GK +L+VED+ VFR+++ + S G A +G++ L L PDL++CD+AMP M Sbjct: 6 LEGKDVLVVEDDPVFRNMIVGFLESQGCLVQEADNGLEGLRALKEHIPDLLLCDLAMPVM 65 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 G++ +E + + P++VIS T MAD+A ALRLGV+D L+KP++++ L+ + + L Sbjct: 66 TGMEFVEEVSIQYPMIPIIVISGTGEMADVALALRLGVKDFLIKPLENILMLKSSMISVL 125 Query: 125 YPSMFNSRVEE----------------EERLFRDWDAMVDNPAAAAKLLQELQPPVQQVI 168 + + EE L + +NP AA +LL L P Q Sbjct: 126 KGQDSATHHRQDFSNRWFATTEDTEPVEEELEWHIKDLQNNPKAARELLVGLMPETQSTY 185 Query: 169 SHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQ 228 ++NY L + D ++LD L + LAFY LD + HN ALL+RA FN Sbjct: 186 GRWQLNYCVLQSIDSLPVILDYTWLLDGQLAFYLLDTSSGDHNATATALLIRAFFN---- 241 Query: 229 EQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNT 288 + L +Q L L L+ + ++ + L G + + L ++ AG+ + L T Sbjct: 242 DYLRNQGNCLESLSHLVSLIEKGMKHSGYASPIKALFGVFDLSDRCLHILPAGIESQLRT 301 Query: 289 GEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLM 333 + ++++G LG A N LS + + +GGRL L Sbjct: 302 SDDSFEVASGEWLG--REARHNMLS------KLALSPSGGRLSLS 338 >UniRef50_A0YTY5 Sensor protein n=6 Tax=Bacteria RepID=A0YTY5_9CYAN Length = 1012 Score = 223 bits (569), Expect = 7e-57, Method: Composition-based stats. Identities = 64/338 (18%), Positives = 122/338 (36%), Gaps = 36/338 (10%) Query: 10 ILI--VEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF-TPDLMICDIAMPRMNG 66 IL+ V+DE + +L + S T A+DG +AL +L PD+++ D+ MP+M G Sbjct: 637 ILVFIVDDEPINLQVLMNMLSLHDYTITQASDGEEALAILETGYKPDIILLDVMMPKMTG 696 Query: 67 LKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 ++ + IR R + P+L+++A + DI L G D L KP+ + L + + Sbjct: 697 YEVTQKIRERFTTTELPILLLTAKTQVQDIVTGLGFGANDYLNKPIAK-DELLARMKTQI 755 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPP--VQQVISHCRVNYRQLVAAD 182 + + KL + + P + I + A + Sbjct: 756 NMCRLRAE----------NIRLSAEVEVIKKLQKMVLPKDVELESIQDLEIASFIQPADE 805 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 G D+ +N + DVT G L ++ + L++ + Sbjct: 806 VGGDYYDVLQY-DNQVKIGIGDVTGHGLESGLLMIMAQTAVRTLIESL-------ETDPI 857 Query: 243 ALLKQVNHLLRQA--NLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISN 297 + +N L + + + K++ L S + GE + + Sbjct: 858 KFMDILNRTLYGNIQRMNSSKNMTLALLDYADKSIKL-SGQHEEVILVRADGEVERIDTV 916 Query: 298 --GVPLGTLGN--AYLNQLSQRCDAWQCQIWGTGGRLR 331 G P+G G ++ Q + + + T G Sbjct: 917 DLGFPIGLDGEIAEFVAQQTIPLSSGDVVVLYTDGITE 954 >UniRef50_C4LC82 Response regulator receiver protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LC82_TOLAT Length = 338 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 83/337 (24%), Positives = 150/337 (44%), Gaps = 15/337 (4%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M + ++ILI+EDE VFR L ++ S + GV+ L + F PD+++CD+ Sbjct: 1 MRHSMSQRKILIIEDEAVFRMTLGAYLRSKNFLVLETRSGVEGLAGVAMFQPDVVLCDLH 60 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP M G +++ I R PV+VIS DI +ALR G D L KP+ D N + E + Sbjct: 61 MPGMPGHQVINCIHRRYPYIPVIVISGMVKFDDITRALREGACDYLPKPITDWNVVTEAI 120 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 C S+ N + L + + + A KL+Q +Q P + ++++ + Sbjct: 121 QEC---SLDNGPTSHYKELQQHRYLLRKDDYTATKLMQIMQKPSPMQLGQWQIDF----S 173 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 + P L +D + EN L +++ + A +++ L + L +E ++NQ Sbjct: 174 STTPLLYVDFYPV-ENALMVVIVELYAGMLDVAFVAAMIKFLLDPLYREYKQNENQLFDS 232 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVP 300 +L +N + Q+ + + + + +AGL++ H ++ + + Sbjct: 233 PRRVLGYLNSHICQSGILCNINCSALLLSDKTEMVHFANAGLSSP-----HWLKKAANLS 287 Query: 301 LGTLGN-AYLNQLSQRCDAWQCQIWGT-GGRLRLMLS 335 LG L AY N + ++ I L L +S Sbjct: 288 LGLLPEVAYQNFNKEISYPFEMTIQSEIDHELVLKIS 324 >UniRef50_C5V035 Response regulator receiver protein n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V035_9PROT Length = 570 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 126/332 (37%), Gaps = 26/332 (7%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L V+D R L+ + +G LA DGV AL L PDL++ D++MP ++G Sbjct: 9 VLAVDDSNTNRQLILAMLKKMGHRVTLAEDGVHALALCDECRPDLVLMDVSMPVLSGFDT 68 Query: 70 LEHIRNRGD-QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 + +R R P+L +SA + ++ + L G +D L KPV L+ + Sbjct: 69 VREMRRRYAGWFPILFLSAQTSNHEVLEGLHAGGDDYLFKPVN-YEILQAKIHN------ 121 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVL 188 F R+E+ L + + A +++ I V + A + G ++ Sbjct: 122 FQIRIEQNLSLLEYHARIEEETDTARDFIKQF--TALDKIHDPLVRFFLKPAENFSGDLI 179 Query: 189 DIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQV 248 +A +N L D G LA + + F + + A L A+++++ Sbjct: 180 SVARGPDNCLHVLLADSAGHGLTAALAVIPITQPFYQMTAKGFA--------LPAIVREL 231 Query: 249 NHLLRQANL-PGQFPLLVGYYHRELKNLILVSAGLNATLNTGE----HQVQISNGVPLGT 303 N +R+ P V + + + G L GE S +PLG Sbjct: 232 NRRVREYLPLPRFVAASVLSLDPATGIVQVWNGGCPPVLLLGEGADILHRFNSRHLPLGV 291 Query: 304 LGNAYLN---QLSQRCDAWQCQIWGTGGRLRL 332 + + + + D + + G + Sbjct: 292 VAADEFDAGLEYFKVVDQAASLLMCSDGATEI 323 >UniRef50_Q7MIU6 Response regulator n=56 Tax=Vibrionales RepID=Q7MIU6_VIBVY Length = 368 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 88/322 (27%), Positives = 151/322 (46%), Gaps = 24/322 (7%) Query: 1 MT---QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMIC 57 MT + + K I +V+D+ +FR + ++ S G V + +G+ AL+ L PD+++C Sbjct: 10 MTSAREAVQPKLIQLVDDDPIFRRITSAYLESQGYKVVESENGLQALQQLRECDPDIVLC 69 Query: 58 DIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 D++MP ++G++ +E + P++V+SAT M+D+AKALR G++D L KP+ D L Sbjct: 70 DLSMPVLDGIEFVEEVSLEYPSLPLIVVSATGEMSDVAKALRFGIKDFLPKPIGDYQHLA 129 Query: 118 EMVFACLY-----------------PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQEL 160 E + L + +E+ L + + DNP +A LL L Sbjct: 130 EAIENTLEDSMNHMSDQRDFSSQWFRVDGGGELPDEQELHWHLNYLEDNPNSARDLLHAL 189 Query: 161 QPPVQQVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLR 220 P + +Y+ L + D LV D L AFY +D GV ALL+R Sbjct: 190 LPDKDTSQGDWKFSYKLLQSTDMMPLVFDYRWLMNGQFAFYLVDSASVEKQGVATALLIR 249 Query: 221 ALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSA 280 ALF+ L+ +L +++ + +R ++ L G ++ ++ A Sbjct: 250 ALFDDYLRNL----KSFSADLKDIVEILERGIRYSDCACPVNALFGIADLVDGSVEILPA 305 Query: 281 GLNATLNTGEHQVQISNGVPLG 302 GL++ +TG I+ G LG Sbjct: 306 GLDSQWSTGFINQHIAAGNRLG 327 >UniRef50_Q0RR80 Putative regulatory protein n=1 Tax=Frankia alni ACN14a RepID=Q0RR80_FRAAA Length = 377 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 67/340 (19%), Positives = 122/340 (35%), Gaps = 37/340 (10%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 MT + +L+V+D R +L SW G A+ G +AL + PDL++ D+ Sbjct: 1 MT--VERASVLVVDDSVSKRYVLGSWLRRAGYEVFEASSGEEALREVRDHVPDLVVLDVH 58 Query: 61 MPRMNGLKLLEHIR--NRGDQTPVLVISATE-NMADIAKALRLGVEDVLLKPVKDLNRLR 117 +P ++G+++ I+ PVL +SA + D + L G + L+ P++ L Sbjct: 59 LPDLSGIEVCRRIKRDRESAGVPVLHVSAIAVDAGDRSIGLDEGADAYLVDPIEPREFL- 117 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 V A L S + A L + L P ++ RV R Sbjct: 118 STVGALLRQSRRYAE----------------EHRIALTLQRSLLPATLPDLAGLRVAARY 161 Query: 178 LVA---ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQ 234 + A+ G D + + DV + LR + Sbjct: 162 HASAAQAEVGGDFFDAFDTPDGEAFVVIGDVQGHSLGAAIIMAELRYALRAYAFDGHR-- 219 Query: 235 NQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV- 293 A+L ++N L+ ++ + + + + + +V+AG L G ++ Sbjct: 220 ------PAAVLDRLNRLMLLSHPEATATVCILTFPPDRSRVTIVNAGHLPPLLIGPDRLS 273 Query: 294 --QISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + GV LG A + + A + T G + Sbjct: 274 YWEAGAGVLLGVDAGAQIAD-TMPLPAGSRLLLFTDGLVE 312 >UniRef50_B0SID6 Response regulator n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SID6_LEPBA Length = 396 Score = 220 bits (560), Expect = 9e-56, Method: Composition-based stats. Identities = 63/331 (19%), Positives = 110/331 (33%), Gaps = 20/331 (6%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 +IL+V+D + ++ G +A DG ALEL DL++ DI +P ++G Sbjct: 25 AAKILVVDDNETNMEIITHILLGQGFEVAVAYDGEYALELAEVLDFDLILLDILLPGISG 84 Query: 67 LKLLEHI--RNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 L++ + + R TP+L +SA +DI K L G D + KP ++ L + L Sbjct: 85 LEVAKRLLSMERHKNTPILFLSALNETSDIVKGLETGAVDYITKPFQESEIL-ARIRTHL 143 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 + A+ + A ++L H + Sbjct: 144 KIKTLEKERIDL------LYAIQKDLELAKANQEKLVTFQFPPSPHYEIFTSYKPMDLVG 197 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 G ++ L DL DVT G + +L+ F + N+ Sbjct: 198 GDLITYDVLPSGDLDILFGDVTGHGIAAAMVSLMAIITFKTM--------NKSFLSPSEC 249 Query: 245 LKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV--QISNGVPLG 302 L +++ L + Y E L AG + HQ+ + G L Sbjct: 250 LYWLHNTLTPLISTHFISAVYIRYRAEENLLSFSMAGHHHMFLLRNHQIKKLGTKGFCLM 309 Query: 303 TLGN-AYLNQLSQRCDAWQCQIWGTGGRLRL 332 + N + + G + Sbjct: 310 MFPDLLNTNNEDIVLQSGDRLFLFSDGMFEV 340 >UniRef50_A0LC69 Response regulator receiver protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LC69_MAGSM Length = 390 Score = 219 bits (559), Expect = 1e-55, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 123/345 (35%), Gaps = 35/345 (10%) Query: 2 TQPLVGK-----QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT-PDLM 55 QP++G +I+I++D +L G + V G ALE + PDL+ Sbjct: 8 NQPVMGSMETKSKIVIIDDAPENLHILLEVL-GEGYSVVPFKSGKKALESMENGALPDLI 66 Query: 56 ICDIAMPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDL 113 + D+ MP M+G + ++ R P++ I+A + A+AL +G D + KP+ + Sbjct: 67 LLDVMMPDMDGFETCRRLKERSDTSNIPIIFITALNDPISEARALSMGGVDFISKPINPI 126 Query: 114 NRLREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQV--ISHC 171 + V L R +RD A ++ + ++++E+ ++Q + Sbjct: 127 AV-KARVKTHLSLC----------RAYRDLAASLEKLSWEREIIEEILLTMRQHPLLRAP 175 Query: 172 RVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQL 231 + G ++ + + L D T G + ++ +F + ++ L Sbjct: 176 YLRTLFTPVERTSGDIVLLEQRPDGYLHVLLGDCTGHGIPAAILGPMVMDIFFAMTRKGL 235 Query: 232 AHQNQRLPELGALLKQVNHLLRQANLPGQFPLLV-GYYHRELKNLILVSAGLN--ATLNT 288 +L ++N L + P F + + L + + L Sbjct: 236 P--------PQEILDEINRKLYERVPPNVFMAAYFLEVSPAQERVRLWNYAMPEACLLRR 287 Query: 289 GEHQVQ-ISNGVPLGTLGNAY-LNQLSQRCDAWQCQIWGTGGRLR 331 G+ S LG + + + + G + Sbjct: 288 GQWLFPSHSTATFLGVQPHVVNVGSQATPLLPSDRLYVFSDGIVE 332 >UniRef50_UPI0001699C5B response regulator receiver protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699C5B Length = 300 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 58/299 (19%), Positives = 112/299 (37%), Gaps = 25/299 (8%) Query: 11 LIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKLL 70 L+ +DE R +L++ LG + A DG DA+E + D+++ D+ MP M+G Sbjct: 19 LVADDELSNRVILNALLKKLGYQVIQAVDGADAVEKFRQHSIDIVLMDVMMPVMDGYAAT 78 Query: 71 EHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 E I++ PVL ++A + +A+ + +G +D L KP L + + Sbjct: 79 EIIKSETADKFIPVLFLTAMTDDKALARCIEVGGDDFLTKPYNH-TVLSAKIQSMERIQN 137 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVL 188 + + ++ M + A ++ V+ ++++ A+ G ++ Sbjct: 138 LHQDIRML------YNRMQMDEEIAEQVFSGAVLAGNVVLD--QISHLHKPASIFSGDIM 189 Query: 189 DIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQV 248 A +DL D T G L AL +F + + +L+ + Sbjct: 190 LTAYSPSHDLHVLLGDFTGHGLAAALGALPTSEVFRSMTAKGF--------SPPQILQGI 241 Query: 249 NHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLN-TGEHQ----VQISNGVPL 301 N L + G F L + + + G+ G + S +PL Sbjct: 242 NSKLHKMLPTGMFLAAQFVKISASLDYITVFNCGMPDLFVIDGNTRRIKKRLESRSMPL 300 >UniRef50_D0IC36 Response regulator n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0IC36_VIBHO Length = 385 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 101/348 (29%), Positives = 165/348 (47%), Gaps = 31/348 (8%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L GK++LIVED+ +F ++ + G T A +G+D L+ L PDL++ D++MP M Sbjct: 36 LEGKEVLIVEDDPIFSRIISHFLRKEGCTVREAENGLDGLKALREGIPDLLLSDLSMPVM 95 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 GL+ +E + PV+VIS T MAD+A+ALR GV+D L+KP++D+ ++ + + L Sbjct: 96 TGLEFVEEVSMEYPMLPVIVISGTGGMADVAQALRFGVKDFLIKPIEDVMVVKSAILSVL 155 Query: 125 Y-----------------PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQV 167 + E L + ++DNP A LL L P Sbjct: 156 EENDGGVSSDADFSQQWFKVSQDGDQPLTEELKWHLEDLLDNPGNARDLLMGLMPEQDSQ 215 Query: 168 ISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL 227 R++Y L +AD +VLD + + +AFY +D AG NG L++RA FN L Sbjct: 216 QGDWRLSYHSLQSADISPIVLDYTWMMDGKMAFYMVDSASAGENGTATTLMIRAFFNEYL 275 Query: 228 QEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN 287 + Q+A + + L+ Q+ + ++++ + G + L ++SAGLNA ++ Sbjct: 276 RSQIADEKGFI----HLVHQIEYAIKRSTYASPIRAMFGILNASDNQLDVLSAGLNAVVD 331 Query: 288 TGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLS 335 V + N LG I +GG +R+ LS Sbjct: 332 GTGKAVIVKNNNLLGIDAA----------SIRFQTIDLSGGSVRVSLS 369 >UniRef50_A0LA49 Response regulator receiver protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LA49_MAGSM Length = 561 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 68/341 (19%), Positives = 119/341 (34%), Gaps = 36/341 (10%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 IL+V+D+ ++LL + + L LA G A+EL P L++ D+AMP M+ Sbjct: 5 PNMAILVVDDDLDMQTLLKRYLAELNLPLYLANHGEQAVELYRQHQPQLILMDVAMPIMD 64 Query: 66 GLKLLEHIR---NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 G IR N + +L ++A E + L G +D++ KP + L + Sbjct: 65 GFAAAHSIRHYQNPKSECAILFMTALETEELLVHCLECGGDDIITKPFRR-ALLLARTKS 123 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 L + ++ E V+N L+ ++ + + R Sbjct: 124 WLKRTQLAIQLREHRDRLAYERRFVENT------LERIRHSSRLDEHNLRF--LLDSVER 175 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 G +L A+ + + D T G L A L+ +F + Q L Sbjct: 176 AAGDILLAASRPDGVQHIFLGDFTGHGLPAALGAPLVSDIFYSMTQRGCV--------LS 227 Query: 243 ALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATLNTGEHQ---VQISNG 298 +L ++N L G F + + L +AGL L + + S+ Sbjct: 228 HILMEINQKLHDRLPSGMFLAMAACEADHGRGVVKLWNAGLPDILVYEQDRVCFRAPSSL 287 Query: 299 VPLGTLGNA-------YLNQLSQRCDAWQCQIWGTGGRLRL 332 +PLG + Y + T G + Sbjct: 288 IPLGITVDENFLAVGYYYQSRQP-----KRIFLYTDGVTEM 323 >UniRef50_B5FFM8 Hnr protein n=3 Tax=Aliivibrio RepID=B5FFM8_VIBFM Length = 368 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 88/342 (25%), Positives = 162/342 (47%), Gaps = 24/342 (7%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L K ILIV+D+ +FRS++ + + A +G++ L++L PD+++CD+AMP + Sbjct: 22 LRNKDILIVDDDPIFRSMIRAVLETYSCNVKEANNGLEGLQMLKHSLPDVLLCDLAMPIL 81 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 NG++ +E P++VIS + +M D+AK LRLG +D L+KP+ D++ L + + + L Sbjct: 82 NGIEFVEEAVLEYPMLPIIVISGSGDMQDVAKVLRLGAKDFLVKPISDVSILIKSLSSAL 141 Query: 125 YPSMFNSRVEE----------------EERLFRDWDAMVDNPAAAAKLLQELQPPVQQVI 168 S +S + + L + + + P +LL EL P + Sbjct: 142 KLSEESSLRMQDFSSQWFRTSELDKSCNDELHWHLEYLQEEPNVGRELLFELLPESEAQH 201 Query: 169 SHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQ 228 ++ +++YR L + D L+ D L + L FY +D G NGV++ LL+RA FN ++ Sbjct: 202 ANWKLSYRLLQSTDGMPLIFDYEWLLDGRLFFYLVDSDSGGENGVISCLLIRAFFNDFIR 261 Query: 229 EQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNT 288 + Q + A+++ + + + GY + + ++SAGL+A + Sbjct: 262 D----QQMSTNTISAMVESIEKGMSTMENSQAMSGVFGYVDLSEQAVFILSAGLDAIWES 317 Query: 289 GEHQVQISNGVPLGTLGNAYLNQLS--QRCDAWQCQIWGTGG 328 + + L NA NQ+ + + G Sbjct: 318 NNQRNVLRANNQLTI--NASSNQVHRFSVKEGANSLLLNNVG 357 >UniRef50_A0LC21 Response regulator receiver protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0LC21_MAGSM Length = 367 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 65/330 (19%), Positives = 121/330 (36%), Gaps = 33/330 (10%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +LI ED+ + +L+ + SLG ++A +G A+E+ PDL+ D+ MP M+G + Sbjct: 3 TLLIAEDDHAYALILEHFLLSLGHKVLIANNGEQAVEMFKIHQPDLIFMDVLMPAMDGHQ 62 Query: 69 LLEHIRN----RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 IR Q P+L ++A E+ +A+ L G +D + KP L+ + A L Sbjct: 63 ATREIRRLTLGDPVQVPILFLTAIESEKVLAECLECGGDDFISKPFSTTT-LKARLNAWL 121 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 + M + A++++ L+ + + R A Sbjct: 122 KKRHMSEE-------------MARDHRHIARVVENLRRDTRYYGENLRTITC--PMAQVS 166 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 G ++ A + +D T G + + L+ F + E AL Sbjct: 167 GDLILSAKRHDGTQLIAVVDFTGHGLSAAICGPLISHAFYTHFLAHI--------ETTAL 218 Query: 245 LKQVNHLLRQANLPGQFPLL-VGYYHRELKNLILVSAGLNATLN-TGEHQVQISNG-VPL 301 L +N LL G F + + + L + G+ A ++ G +P+ Sbjct: 219 LFILNELLCHKLPEGMFMAAHFVELSPDQRQMRLWNFGMPACVHIDGSQIFLYGKHLLPM 278 Query: 302 GTLGNAYLNQLS--QRCDAWQCQIWGTGGR 329 G + + Q + + G Sbjct: 279 GIHEMTPQSMVCTVQPINKGSRLYLFSDGV 308 >UniRef50_A0L4R7 Response regulator receiver protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L4R7_MAGSM Length = 373 Score = 213 bits (544), Expect = 6e-54, Method: Composition-based stats. Identities = 67/342 (19%), Positives = 128/342 (37%), Gaps = 36/342 (10%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 ++ILIVED++ LL+S+ S G +LA DG A+E PDL+I DI +P +G Sbjct: 8 RKILIVEDDETSAWLLESFLRSEGYEVILARDGFAAVERYQSADPDLIIMDILLPGQDGY 67 Query: 68 KLLEHIRN----RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 E IR P++ ++A E+ A++A+ L G +D ++KP + L+ + + Sbjct: 68 AATEQIRAITRNEDSPPPIIFLTAIESDAELARCLDCGGDDFVVKPFNPI-ILKARIHSL 126 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 L EE++ +++D ++ + + + Sbjct: 127 LERLAL---AEEKQLALFQIASVLDKLRQSSHFQTS------------DLVFLERPLGRI 171 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGA 243 G V+ + + + D T G + L+ LF + + + Sbjct: 172 SGDVVLSTSKANGNRLVVIGDFTGHGLPAAICGSLVIPLFYEM--------AAADADTES 223 Query: 244 LLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLN-ATLNTGEHQVQISN-GVP 300 ++ +N L + G F V ++ K + + + GE +P Sbjct: 224 IIGSINTTLYEKLPSGFFMAASVIEFNPHAKQVTFWNFAAPGCFIRRGEAWQAYPLYQLP 283 Query: 301 LGTLGN--AYLNQLSQRCDAWQCQIWGTGGR---LRLMLSAE 337 LG + L + + + G L +ML + Sbjct: 284 LGAVEQLPKPLESATLAVQSNDRVYAYSDGLCDTLGVMLEKD 325 >UniRef50_A6W0W4 Response regulator receiver protein n=2 Tax=Marinomonas RepID=A6W0W4_MARMS Length = 572 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 60/335 (17%), Positives = 113/335 (33%), Gaps = 21/335 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ILI +D R LL + S G + A DG DA++ T L+ DI MP +G + Sbjct: 6 TILIADDNPSDRILLKAILSQFGHNVISAVDGQDAIDKFDPHTIQLVCLDIKMPHKDGWE 65 Query: 69 LLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 I+ P++ +S + ++ LR+G D + KP + + A + Sbjct: 66 AALEIQRIAGDVFVPIIFLSGVTDPIALSNCLRIGGIDFISKPYSP-ALITAKLNAIVRL 124 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLL-QELQPPVQQVISHCRVNYRQLVAADKPG 185 + +EE+ ++ + N AK++ + + + G Sbjct: 125 LVMQKTLEEQRDAMSLYNEQLLNEQEVAKVVYENITNSNCLKDPALSTIHYG--THVFNG 182 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 V+ A + D T G + + AL L +F ++ + ++ Sbjct: 183 DVILAAYKPNGGMHILLGDFTGHGLSAAIGALPLADIFFDWTRKGFL--------MRQII 234 Query: 246 KQVNHLLRQANLPGQFP-LLVGYYHRELKNLILVSAGLNATL----NTGEHQVQISNGVP 300 ++N L+ F K++ + + GL L N + S +P Sbjct: 235 PEINARLKGILPSNMFCSAAFIDIKVNNKSIEVWNGGLPDLLFLPQNADKPVKLTSKNLP 294 Query: 301 LGTLGNAYLNQLSQRCD--AWQCQIWGTGGRLRLM 333 LG L + + G + Sbjct: 295 LGVLSPDAFECQIDPMSFVPGDRLMAFSDGVYEAL 329 >UniRef50_A4TWB5 Stage II sporulation E n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TWB5_9PROT Length = 395 Score = 210 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 56/341 (16%), Positives = 111/341 (32%), Gaps = 27/341 (7%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+D+ +L + A D + AL++ P L++ D+ MP M+G +L Sbjct: 7 VLVVDDDPANIMILSQTLRPE-HDVLFATDALKALDIAFHRLPHLILLDVMMPGMDGYEL 65 Query: 70 LEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 ++ + PV+ I++ E+ K L+ G D + KP +R V L Sbjct: 66 CRRLKADSVTAEIPVIFITSLEDKESEIKGLQCGAVDYIPKPFNPP-VVRARVHNHLEMV 124 Query: 128 MFNSRVEEEERLFRDWDAMVDN-PAAAAKLLQELQPPVQQVISH-CRVNYRQLVAADKPG 185 + + + + MV A+++ + P + + G Sbjct: 125 RARINLRQYNQQLESANRMVAAGLRYASRIQGAMLPDLADLQGAVAETAVLWRPLDVVGG 184 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 A + + F +D T G G A++ A +L+ + R + +L Sbjct: 185 DYY-WAGMHGDVSVFALIDCTGHGVPGAFMAVVAAASLAQVLR------DSRTTDPARIL 237 Query: 246 KQVNHLLRQANLPGQ--------FPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISN 297 ++ R+ Q F + L A ++ + E + Sbjct: 238 ADLHQAFRRLLRQDQGGQASDDGFDAAICVVDPGRCELAFAGANMHLLMAEAEGVDLL-R 296 Query: 298 GVPLGTLGNA-----YLNQLSQRCDAWQCQIWGTGGRLRLM 333 G +G L+ + G M Sbjct: 297 GDRVGLGEGGAPDLTRLSTRMVELRPGAGFYLFSDGITDNM 337 >UniRef50_A5F188 Response regulator n=38 Tax=Vibrio RepID=A5F188_VIBC3 Length = 568 Score = 209 bits (532), Expect = 2e-52, Method: Composition-based stats. Identities = 64/339 (18%), Positives = 122/339 (35%), Gaps = 23/339 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT--PDLMICDIAMPRMN 65 +++IV+D R L + + + DG A++ + PD+++ D+ MP + Sbjct: 1 MRVMIVDDHGTNRELCRFILAHIASHIDTFEDGQQAIDAMREMEILPDVILLDVMMPIKD 60 Query: 66 GLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G + IR P++ ++ ++ K L LG +D +LKPV+ + L V A Sbjct: 61 GFVTAKEIRQAFVKHHIPIIFLTVLDDRDSFEKCLALG-DDFILKPVER-SVLIAKVQAH 118 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAK-LLQELQPPVQQVISHCRVNYRQL-VAA 181 ++ V E+ R + V A ++ + L + + H + + Sbjct: 119 YRIVKMHNEVMEQRDELRHFREQVQYDYAISESIFTNLMEEMCHQVEHIFGIHYISTPST 178 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPEL 241 G ++ +A + D T G ++ + F Q+ L L Sbjct: 179 IFNGDLIVVANRPHGGVYVMIADATGHGLPAAISTIPATRTFFSTAQKGL--------SL 230 Query: 242 GALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL----NTGEHQVQIS 296 G ++ ++NH L + G V + GL + IS Sbjct: 231 GEMVIELNHSLERFLPVGMMLAASVFEVRANGFEISWWGGGLPEAYLLDHHGNIVSRLIS 290 Query: 297 NGVPLGTLGNAYLNQ--LSQRCDAWQCQIWGTGGRLRLM 333 N +PLG L + + + Q + T G + M Sbjct: 291 NHMPLGVLPSNEFEADVQHFKLEPNQKLVCYTDGIIEAM 329 >UniRef50_Q2W1D4 Serine phosphatase RsbU, regulator of sigma subunit n=2 Tax=Magnetospirillum RepID=Q2W1D4_MAGSA Length = 421 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 58/336 (17%), Positives = 121/336 (36%), Gaps = 21/336 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLG---ATTVLAADGVDALELLGG-FTPDLMICDIAMPRM 64 +L+VEDE L++ A+ + G T D+++ D+++P Sbjct: 33 HVLLVEDEPGDARLVEYALRMSSAPVFVVRHVTTLAAAIAHINGGETVDVVLLDLSLPDS 92 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVF-AC 123 G+ + ++ +TP+++++ ++ + AL G +D L+K + + A Sbjct: 93 TGIATVSRMQEAASRTPIVIMTGMDDPRFASYALEAGAQDYLIKSDDPERTVGRAIRYAI 152 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVIS-----HCRVNYRQL 178 + R ER+ +V+ AA + +L P +++ V Sbjct: 153 TRMAGQLERQALLERIAEQQRHLVEEVNAARAMQFDLLPRPERLDERLAKLGIEVESFFE 212 Query: 179 VAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRL 238 ++ G + ++FYC D T G L L AL ++ Sbjct: 213 PSSGIGGDLWGCLDCGGPRMSFYCFDFTGHGIGAALNVFRLHAL--------ISDHWDPR 264 Query: 239 PELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL--NTGEHQVQI 295 + G +L ++ L+ GQF + + E + SAG A + E++ Sbjct: 265 RQPGEMLTTLSGALKSLLGRGQFATMFLCTIDVEAGEIEWASAGAPAPVIMQGEEYRFLD 324 Query: 296 SNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 ++G+PLG + + + + Sbjct: 325 ASGIPLGLSKSPSYREHREAFPPDASLFMYSDAITD 360 >UniRef50_A4TY72 Stage II sporulation E n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4TY72_9PROT Length = 430 Score = 208 bits (530), Expect = 3e-52, Method: Composition-based stats. Identities = 61/335 (18%), Positives = 118/335 (35%), Gaps = 20/335 (5%) Query: 9 QILIVEDEQVFRSLLDSWFSS---LGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 ++L+VED+ L+ A DA + LG D+++ D+++P + Sbjct: 47 RVLLVEDQPGDAMLVMIALRECRSTRFVVSHVATLADARDHLGREVMDVVLLDLSLPDSS 106 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL-REMVFACL 124 GL + + + PV+V++ ++ + ++AL +G +D L+K + R +++A Sbjct: 107 GLDTVTKVLQVAPRMPVVVMTGLDDPSLASRALEVGAQDYLVKSDDPGRAVERAILYAIT 166 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVIS-----HCRVNYRQLV 179 + R E+L + + + A + +L P ++ R++ Sbjct: 167 RMNSQIEREHLSEQLAHEQQRVQEEMVVARTMQFDLLPRPDRLNPVLEKQGIRLHSYFEP 226 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 + G + L + L+ D + G L L L + L Sbjct: 227 CSGIGGDLWGCHDLGDGRLSLTAFDFSGHGIGAALNVFRLHTLIDEHRS--------YLG 278 Query: 240 ELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL--NTGEHQVQIS 296 + ALL + LRQ GQF + G L AG + G + + Sbjct: 279 DPAALLNMLALSLRQLLGRGQFATMFAGIIDFANSELTWAGAGTPPPILFRGGRREFLDT 338 Query: 297 NGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 GVPLG + + + Sbjct: 339 RGVPLGLSAKPAHENHRTAFPRGSGLLIYSDALVE 373 >UniRef50_A3WMP1 Response regulator of sigma subunit, serine phosphatase (CheY-RsbU) n=2 Tax=Idiomarina RepID=A3WMP1_9GAMM Length = 333 Score = 206 bits (524), Expect = 1e-51, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 133/306 (43%), Gaps = 7/306 (2%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + K +L++ED++VF+S+++ + G + TPD+++CD+ +P + Sbjct: 1 MSQKHVLLIEDDRVFQSVVEQFLIQQNYAVHCVEYGEQGVSWCQQNTPDIVLCDLMLPDI 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 NGL+++E + + PV+VISA+++M DI +A+RLG D L+KP+ L+ + + + CL Sbjct: 61 NGLEVIERLLSLAPHLPVIVISASDDMGDIREAVRLGAWDYLVKPIDRLDTITQAIEHCL 120 Query: 125 YPSMFNS-RVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 V + L + + + A+L +L + + + A+ Sbjct: 121 QRHRLEETYVSDIWELDSHINQLYQDDHIVARLANDLLAKQPLNVGDYHIESQVAAGAEA 180 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGA 243 + +D L+E + ++ L+L+ L L+++ LA + + + + Sbjct: 181 N-IWIDYRPLTEGRVLIVMATAHSQTEQNLIPLLVLKTLIAPLIRQHLAGSDDTILDPRS 239 Query: 244 LLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVPLGT 303 L++ +N L + + F + E G + Q Q + LG Sbjct: 240 LVQHINFELCHSRVRTAFDGVFAVLDTEQHAFRWTQVG-----DRLRMQPQAKPDLALGI 294 Query: 304 LGNAYL 309 +A Sbjct: 295 WRHASF 300 >UniRef50_Q7MBQ8 Serine phosphatase RsbU n=2 Tax=Vibrio vulnificus RepID=Q7MBQ8_VIBVY Length = 558 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 61/337 (18%), Positives = 123/337 (36%), Gaps = 23/337 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG--FTPDLMICDIAMPRMN 65 +I IV+D + S L A G++ + L PD+++ D+ MP ++ Sbjct: 1 MKIYIVDDHPSNIEVCKMMLSDLDARISTFNSGLNVISALQEVNELPDVIVLDVMMPELD 60 Query: 66 GLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G + + IR ++ ++A ++ K L G +D + KPV+ N L V A Sbjct: 61 GFQTAQIIREAFPNRHIAIIFLTALDDQESFGKCLTFG-DDFIPKPVQR-NVLLAKVQAH 118 Query: 124 LYPSMFNSRVEEEERLFRD-WDAMVDNPAAAAKLLQELQPPVQQVISHCR-VNYRQLVAA 181 + + + V ++ + + + A + L+ ++ + V+Y + Sbjct: 119 VRIAKMYNEVAKQRSELSHFHEQVRYDYTIAESIFANLKQEMEGCLDVVSGVDYFSSPST 178 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPEL 241 G ++ +A + D T G ++A+ FN + + +A L Sbjct: 179 VFNGDLIILARRPHGGIYAMIADATGHGLPAAISAIPATRAFNSMAAKGMA--------L 230 Query: 242 GALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEH-QVQIS 296 G ++ ++N L + G + +++ GL + G + S Sbjct: 231 GEIVSEINSALVRFLPMGMMLAASLFEISGNGRHIRWWGGGLPDAFLLNHDGSVAERLTS 290 Query: 297 NGVPLGTLGNAYLNQ--LSQRCDAWQCQIWGTGGRLR 331 +PLG L + +S Q I T G Sbjct: 291 THMPLGVLEEREFDASVISFELLEGQSIITYTDGVTE 327 >UniRef50_Q31GT9 Response regulator receiver domain protein (CheY-like) n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31GT9_THICR Length = 567 Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 63/335 (18%), Positives = 126/335 (37%), Gaps = 21/335 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+ R L G A DG +AL F P L+I +I +P ++G Sbjct: 3 RILVVDPSYSNRLYLKLTLERAGYQVFDAKDGKEALNQFKQFQPHLVITEIDLPLLSGES 62 Query: 69 LLEHIRNRGDQT--PVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 L+ I++ ++T P+ V++ + I + L G +D L KP V + L Sbjct: 63 LVSEIKSLTEETFYPIFVVTNVTSPESIQEILEAGADDFLQKPY-PEKLFLAKVASLLRN 121 Query: 127 SMFNSRVEEEERLFRDWDAMVD-NPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 F + ++ + L + ++ +A ++ ++ ++ + + + A+ G Sbjct: 122 LDFYNDLKNSKELVSTLHSSLELEHKSAERIFEKFVHGPRKEVPGLKTH--ISSASIFNG 179 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 V + ++ D T G + A+ + +F ++++ L ++ Sbjct: 180 DVFLSSISPAGNVVTLLGDFTGHGLPASIGAIPVAEVFYSMVRKG--------RTLKEIV 231 Query: 246 KQVNHLLRQANLPG-QFPLLVGYYHRELKNLILVSAGLNATL----NTGEHQVQISNGVP 300 +N L F V + K +++AG+ + T E S VP Sbjct: 232 SVINEKLLLILPVHVFFSCTVVKVLPKHKTAKVLNAGMQPLIMVDDKTREVTQYHSTCVP 291 Query: 301 LGTLGNAYL--NQLSQRCDAWQCQIWGTGGRLRLM 333 LG + + L + I T G + M Sbjct: 292 LGIVASDILGIELTEVNLKGHEQFILYTDGVVEAM 326 >UniRef50_B3E9J8 Response regulator receiver protein n=1 Tax=Geobacter lovleyi SZ RepID=B3E9J8_GEOLS Length = 566 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 69/342 (20%), Positives = 130/342 (38%), Gaps = 29/342 (8%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L VED+ V +L+ L A +G + L+ PDL++ D+ MP M+G+ + Sbjct: 15 VLCVEDDPVGAALIRKMLEPLFGHVYSATNGAEGLQQFYQQQPDLIVSDLMMPVMDGIGM 74 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 L IR +TPVL+++A+ + +A+ LGV L KP+ ++ L+ +FA Sbjct: 75 LREIRKSNQKTPVLLMTASLEHVHLVEAINLGVSKFLAKPL-RVDALQRALFAVTRELYL 133 Query: 130 NSRVEEEER----LFRDWDAMVDNPAAAAK-----LLQELQPPVQQ---VISHCRVNYRQ 177 E+ + L + + A+ ++ L V+ Q Sbjct: 134 ERVAEQARQQEVELLQYRNRYHSRQQELAQAKERHIVSNLLETQYLRHADHGGWLVDLLQ 193 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQR 237 G + ++N L + D G + + ++L A FN +Q + + + Sbjct: 194 QPRDIMSGDSYSVVRTNDNTLLLFLADAMGHGLSASVTSMLATAFFNYAVQGYSSGELEF 253 Query: 238 LPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL--NTGEHQVQI 295 +++ L + + F LV + K++ L S G+ A L G + Sbjct: 254 AALATSVMNFAAQNLLEDEV---FSGLVLELDPQRKSVQLASCGMPALLLARNGRVERIR 310 Query: 296 SNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 P+ S Q Q G ++L+ + Sbjct: 311 GANPPV-----------SAFLPPLQLQRINLDGVSDILLATD 341 >UniRef50_Q1NVH0 Response regulator receiver n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NVH0_9DELT Length = 493 Score = 200 bits (508), Expect = 8e-50, Method: Composition-based stats. Identities = 60/242 (24%), Positives = 100/242 (41%), Gaps = 9/242 (3%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +G++IL+V+DEQ R L S G LA +G ALEL+ PDL++ DI MP M+ Sbjct: 1 MGRKILVVDDEQNMRIALYEALSRSGHQVTLAENGRLALELIEQQPPDLVVTDIRMPEMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G+++L+ I+ R Q PV++I+ + +A++ G D +LKP + + E V Sbjct: 61 GIEMLQQIKARAPQLPVVIITGYATVETAVEAMKQGAVDYILKPF-PVEVIDETVRKVFK 119 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + + E + Q R + ++ Sbjct: 120 QRQGEAALGSEGATPAAAVPAAASD-------QRTVIGRDAHFLRLLERARAVASSKATV 172 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 LVL + + A + V+ G AL AL GLL+ +L + + Sbjct: 173 LVLGESGTGKEVFARFIHHVSD-RKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMS 231 Query: 246 KQ 247 K+ Sbjct: 232 KK 233 >UniRef50_A6VXG9 Response regulator receiver protein n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VXG9_MARMS Length = 383 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 52/335 (15%), Positives = 117/335 (34%), Gaps = 21/335 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 ++L V+ E V+R ++ G A +A+ + PD++ D+ + +G Sbjct: 2 MKLLCVDSEPVYREIISLCAEKEGVEVKSVASYEEAILTFESYAPDIVTLDVIVKGGSGY 61 Query: 68 KLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR-EMVFACL 124 L++ ++ P++ +++ + + K + G +D + KP L + + Sbjct: 62 DLVQKLKALSGNRFVPMIFLASHTADSVMDKCFKAGADDFIPKPFN--EVLFNIRLKTHM 119 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAA-KLLQELQPPVQQVISHCRVNYRQLVAADK 183 + + + + M++ A +L +Q ++ +V +L AA Sbjct: 120 RHVELMKEMYRKNKALTYYQKMIEREHEMAHHVLDHIQTRSEKNSE--QVAITRLSAASF 177 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGA 243 G + + S+ + D T G + AL + F + + + Sbjct: 178 NGDLALVKTRSDAARLVFVGDFTGHGLPASIGALPVMQTFFDAVDDLVCVN--------E 229 Query: 244 LLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEHQVQISNGVP 300 L ++N +L F + + G+ + G SN +P Sbjct: 230 LAVRINRILFSILPDYMFCAGYLILMTQEGEITYWGGGMPNAFIRRSNGLVDYLHSNHMP 289 Query: 301 LGTLGNAYLNQ--LSQRCDAWQCQIWGTGGRLRLM 333 LG L + + + +A + + G L L Sbjct: 290 LGILSASEFEADLQNNKLNAGDTLVIVSDGVLELK 324 >UniRef50_Q1IJL8 Response regulator receiver modulated serine phosphatase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJL8_ACIBL Length = 388 Score = 196 bits (500), Expect = 8e-49, Method: Composition-based stats. Identities = 70/333 (21%), Positives = 117/333 (35%), Gaps = 30/333 (9%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +ILI ED+Q + L G A+ L L DL++ D+ R + Sbjct: 16 ASARILIGEDQQDVQDALHILLKGAGYAAESASTPDAILSKLESGKYDLLLMDLNY-RRD 74 Query: 66 ------GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 GL++L +RN PV+V++A ++ +A+ +G D + KP + + L Sbjct: 75 TTSGSEGLEILGILRNMPAPPPVIVMTAWGSIELAVQAMHMGARDFIQKPWDNNHLL--- 131 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLV 179 L ++ +E R F+ A A + + L P IS + + Sbjct: 132 ---HLAEKHISAHRDETLRKFKQ----DHELAEAQAVQKRLMPATLPKISGIDIAGQCQP 184 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 A G D+ L +N L DV G L L+A Sbjct: 185 AGAVAGDYFDVLQLGDN-LGICIADVIGKGLPAALMMSNLQAAVKV--------TAADWV 235 Query: 240 ELGALLKQVNHLLRQAN-LPGQFPLLVGYYHRELKNLILVSAGLNATLN---TGEHQVQI 295 + L K+VN L + + Y +NL+ +AG N + GE Sbjct: 236 KPSELCKRVNALACRNGAVDKFISFFYAVYEPATRNLMYTNAGHNPPMVIRSNGECLRLD 295 Query: 296 SNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGG 328 + V LG + + + + + T G Sbjct: 296 TPDVVLGQISDWQYQDAHFQLEPGDKLVLYTDG 328 >UniRef50_A3YAB7 Response regulator of sigma subunit, serine phosphatase (CheY-RsbU) n=1 Tax=Marinomonas sp. MED121 RepID=A3YAB7_9GAMM Length = 385 Score = 196 bits (498), Expect = 1e-48, Method: Composition-based stats. Identities = 61/335 (18%), Positives = 124/335 (37%), Gaps = 20/335 (5%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 ++L+V++E+++R ++ + S+ G T AA +A + + PDL+ ++ +G Sbjct: 5 SMKLLVVDNEEIYRDIISTCASARGLQTRTAASMDEAFNIFNEWQPDLVSLEVLSSNGDG 64 Query: 67 LKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +KL+ ++ + P++VI+ + A + ++ G +D L KP D+ + L Sbjct: 65 IKLIRQLKEAANDRIIPIMVITFKSDDATMNACIQAGADDFLAKPFNDI-LFNTRLSTHL 123 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQV-ISHCRVNYRQLVAADK 183 +F+ ++ R + +M++ A + L + + +V +L A Sbjct: 124 RNVLFSKETFQKNRDLIYFQSMIEREHRMAHQV--LAHAMDRSEDEDEKVAVTRLAATSF 181 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGA 243 G + I ++N L + D T G + AL L F E + Sbjct: 182 NGDIALIKRRADNGLLLFIGDFTGHGLPASIGALPLTQAFFKAASEN--------SSVAE 233 Query: 244 LLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV----QISNGV 299 + N +L F L G+ E ++ S + Sbjct: 234 IAHHFNSILIDILPDYMFCAAYIILLNTDGMLEYWGGGMPHAFIVREGEIDMQSIRSKHM 293 Query: 300 PLGTLGNAYLNQ--LSQRCDAWQCQIWGTGGRLRL 332 PLG L + A + + G L + Sbjct: 294 PLGILDREEFEDTVTQVKLKAGAKVVVASDGVLEM 328 >UniRef50_Q12PI4 Response regulator receiver protein n=22 Tax=Shewanella RepID=Q12PI4_SHEDO Length = 386 Score = 195 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 70/296 (23%), Positives = 121/296 (40%), Gaps = 24/296 (8%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+D+ VFR L+ + S AT AA G LEL D+++ D++MP + GL + Sbjct: 8 VLLVDDDPVFRQLVTDYLISQQATVFQAASGHQGLELFEKKQIDVVVADLSMPGLGGLNM 67 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY---- 125 L+ + P +VIS MAD+ +ALR+G D L+KP+ DL + + + + Sbjct: 68 LKQLIEMDPSIPAIVISGHSVMADVVEALRIGASDYLIKPIPDLFIIGQAIEQAIEDAVN 127 Query: 126 ---------------PSMFNSRVEEEERL----FRDWDAMVDNPAAAAK-LLQELQPPVQ 165 +M S + +L D +++ A AAK + Q+L P Sbjct: 128 QSANANLQSSEESALQTMLESEMGPLNQLSYQELNDNLHLLEQSALAAKSVQQQLFPASN 187 Query: 166 QVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNG 225 +NY D +D + + L Y ++ +LLR+ N Sbjct: 188 VDYPLAEINYSLFKNDDISAYFIDSTMVGDKHLICYMAHFHPEDNSAAFGCVLLRSFVNQ 247 Query: 226 LLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAG 281 L+ + L E +L +N + ++ L Q + + + AG Sbjct: 248 KLKLYRNGLSTTLIEPFNMLSYLNERMVKSGLHMQVDVSYICIELTQYRVAIGQAG 303 >UniRef50_Q06065 Acetoacetate metabolism regulatory protein atoC n=32 Tax=Proteobacteria RepID=ATOC_ECOLI Length = 461 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 20/242 (8%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILIV+DE R +L + F+ G T A +G AL L PD+++ DI MP M+G+K Sbjct: 6 RILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADIHPDVVLMDIRMPEMDGIK 65 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 L+ +R+ +TPV++++A + +ALR G D ++KP DL+ L +V L Sbjct: 66 ALKEMRSHETRTPVILMTAYAEVETAVEALRCGAFDYVIKPF-DLDELNLIVQRALQLQS 124 Query: 129 FNSRVEEEERLF---RDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + + W ++ N A + ++ + + Sbjct: 125 MKKEIRHLHQALSTSWQWGHILTNSPAMMDICKDTAK---------------IALSQASV 169 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 L+ + + +A + G + AL LL+ +L + L Sbjct: 170 LISGESGTGKELIA-RAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTL 228 Query: 246 KQ 247 +Q Sbjct: 229 RQ 230 >UniRef50_A6TMP3 Response regulator receiver protein n=2 Tax=Alkaliphilus RepID=A6TMP3_ALKMQ Length = 404 Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats. Identities = 58/362 (16%), Positives = 114/362 (31%), Gaps = 47/362 (12%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 ++ ++LI++ L S G + + + + I+MP + Sbjct: 1 MISTKLLIIDSPGENMDHLKSVLRKHGYEVEQ--------QKISDTDVNTIF--ISMPHI 50 Query: 65 -----NG-----LKLLEHIRNRGD--QTPVLVISATENMADIAKA---LRLGVEDVLLKP 109 + L +++ ++ D P++ + K L V+D +LKP Sbjct: 51 IFISIDSEAEEKLNVIKKLKENEDTKHIPIIF---GVEKREKVKGISHLEYKVDDYMLKP 107 Query: 110 VKDLNRLREMVFACLYPSMFNSRVEEEERLF--------RDWDAMVDNPAAAAKLLQELQ 161 + D L + + + R + N A+K+ + L Sbjct: 108 I-DEEELISKIEKLEKIIELQKALSLSNQALKESLHTVERQKIELEQNLTLASKIQEALI 166 Query: 162 PPVQQVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRA 221 P I +C + + G + D+ L E + Y LDV G + A+ L Sbjct: 167 PKSLGYIPNCSFLWHFQPSGKVGGDIFDVFMLDEEHMGMYMLDVMGHGVGSSMLAVTLSE 226 Query: 222 LF-------NGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKN 274 + L ++ + L+ +NH F + + Sbjct: 227 SLILDVDRDSPLKRKTNKPPYYEIASPVQLIHYLNHRFPFKKYEHYFTIFYMILNVRTGI 286 Query: 275 LILVSAGLNATLN---TGEHQVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 + V G A + TGE + G P+G N + S D+ + + G + Sbjct: 287 IKYVRGGHPAPILVKPTGEILELEAYGTPVGFEFNEDYVEGSVALDSGDRLVVYSDGLME 346 Query: 332 LM 333 L Sbjct: 347 LK 348 >UniRef50_D0I4R3 Che cluster related two-component response regulator n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I4R3_VIBHO Length = 563 Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats. Identities = 60/336 (17%), Positives = 114/336 (33%), Gaps = 24/336 (7%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLG--GFTPDLMICDIAMPRMN 65 + LIVEDE + L+ ++A +G AL++L P L+I D+ MP M+ Sbjct: 1 MKALIVEDEVSLQCFLEHVLKDEFDELLIADNGQMALDILASLDELPSLIIMDVLMPVMD 60 Query: 66 GLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G + + IR R P++ ++ + + + LG +D L KPV + V A Sbjct: 61 GFEAAKQIRMRYKAHYLPIVFLTGIVDNDAFNRCMTLG-DDFLTKPVSRTTIV-AKVRAH 118 Query: 124 LYPSMFNSRVE-EEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 + V + ++L + A + L Q + Sbjct: 119 CRSIRLYNEVAIQRDKLKHFQAHTLYEHTMAETIFSNLMQACYQEAEGVEF--YTSSFTN 176 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 G V+ + + + D T G ++ + F + + A LG Sbjct: 177 FNGDVILVTPRPQGGIYAMLADATGHGLPAAISTIPATKAFFAMTKNGFA--------LG 228 Query: 243 ALLKQVNHLLRQANLPGQ-FPLLVGYYHRELKNLILVSAGLNATL---NTGEHQ-VQISN 297 ++K++N L++ PG + ++ G+ GE + S Sbjct: 229 DIVKEMNETLKKFLPPGMLVAANLFEVSASGLDVNWWGGGMPDGYLLDKNGEIKTRLPSA 288 Query: 298 GVPLGTLGNAYLNQLSQRCD--AWQCQIWGTGGRLR 331 + LG + + + T G + Sbjct: 289 HMALGAMNSDEFEANVVALKMVEGDKLFFFTDGVIE 324 >UniRef50_A9A0V6 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Deltaproteobacteria RepID=A9A0V6_DESOH Length = 465 Score = 193 bits (492), Expect = 7e-48, Method: Composition-based stats. Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 11/229 (4%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 K +L+V+DE+ R +L + + G AA+G ALE++ D ++CDI MPRM+ Sbjct: 7 PKKNVLVVDDEENMRHMLAAMLTREGYQVETAANGAQALEMVAKQPFDFILCDIKMPRMD 66 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL L H V+++SA + +AL+ G D + KP K L L Sbjct: 67 GLAFLAHRTEHFPDATVIMMSAYGTIDTAVEALKHGAYDYISKPFKSDEVLLA-----LK 121 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + R++ E R A + K++ + + + ++ A D Sbjct: 122 KASERERLKRENIALRQQIATLGRGYTFGKIIAK-----SKAMQAVTDLITKVAAHDTTV 176 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQ 234 LV + + +A L L + + LL+ +L Sbjct: 177 LVTGESGTGKELVA-RSLHFNSPRAPNALIPVNCGGIPENLLESELFGH 224 >UniRef50_D2QGL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Flexibacteraceae RepID=D2QGL7_9SPHI Length = 488 Score = 193 bits (491), Expect = 9e-48, Method: Composition-based stats. Identities = 62/320 (19%), Positives = 109/320 (34%), Gaps = 34/320 (10%) Query: 1 MTQPLVGK---QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMIC 57 M PL ILIV+D S+L + G ++A DG A+E PDL++ Sbjct: 1 MNTPLESGIVSTILIVDDVPNNISVLYETLTRSGYKVLVARDGKSAIEQATFALPDLILL 60 Query: 58 DIAMPRMNGLKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNR 115 DI MP M+G + ++ PVL ++A D +G D + KP + L Sbjct: 61 DIMMPGMDGFETCRRLKQNPATQPIPVLFMTALSETIDKVNGFNMGAVDYITKPFQ-LQE 119 Query: 116 LREMVFACLYPSMFNSRVEE--------EERLFRDWDAMVDNPAAAAKLLQELQP----- 162 + + L +E+ + + + + D A L+E Sbjct: 120 VLSRIHTHLSLRRLQQSMEQLVAERTQALTKALAEVERLKDQLQAENTYLREEIKQTKNF 179 Query: 163 ----PVQQVISHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALL 218 + + Q+ + L+L + + LA + + N L + Sbjct: 180 DEIVTQSKAFQKVLRSVEQVAPTNTTVLILGESGTGKELLA-RAVHNLSSRKNKPLVKIN 238 Query: 219 LRALFNGLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLIL- 277 AL L++ +L + GA ++V + + + L Sbjct: 239 CAALPATLIESELFGHEKGAFT-GATAQKVGRFELADGG----TIFLDEI----GEMPLD 289 Query: 278 VSAGLNATLNTGEHQVQISN 297 + A L L GE + S Sbjct: 290 LQAKLLRVLQEGEFERVGST 309 >UniRef50_C8QYP0 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QYP0_9DELT Length = 506 Score = 193 bits (490), Expect = 1e-47, Method: Composition-based stats. Identities = 60/292 (20%), Positives = 106/292 (36%), Gaps = 17/292 (5%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +G++IL+V+DEQ R L S G +A +G ALE++ PDL++ DI MP M+ Sbjct: 5 MGRKILVVDDEQNMRVALYEALSRGGYEVKVAENGRMALEMVESEAPDLVVTDIRMPEMD 64 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G+ +L+ I+ PV++I+ + +A++ G D +LKP + + E + + Sbjct: 65 GIAMLQQIQAVRPGLPVVIITGYATVETAVEAMKQGAVDYILKPF-PVEVIEETIKKVMR 123 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + V D + + R + ++ Sbjct: 124 QQPRPAAVAPAAETGSPPPGRTDEGS-------RTVIGRDRHFLRLLERARTVASSKATV 176 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 LVL + + A + V+ G AL AL GLL+ +L + + Sbjct: 177 LVLGESGTGKEVFARFIHHVSD-RKAGPFVALNCAALPEGLLESELFGHEKGAFTGAVMA 235 Query: 246 KQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISN 297 K+ L + + + A L L E Sbjct: 236 KKGKFELAHGGT--------LLLDEIGEVPLHLQAKLLRVLQEEEVDRLGGK 279 >UniRef50_B4AYC7 Response regulator receiver modulated serine phosphatase n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4AYC7_9CHRO Length = 393 Score = 192 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 63/347 (18%), Positives = 125/347 (36%), Gaps = 28/347 (8%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSL-GATTVLAADGVDALELLGGFTPDLMICDI 59 M+ P +L+++D+ + + ++ +D AL++ P +++ D+ Sbjct: 1 MSNP--QITVLLIDDQPIIGEAIRRILAAEINIAFHYCSDPTQALKIAQKVHPTVILQDL 58 Query: 60 AMPRMNGLKLLEHIRNRG---DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL 116 MP M+GL L+ +R + P++V+S+ E+ AKA LG D L+K + D L Sbjct: 59 VMPDMDGLLLVRFLRAKDAPTRDVPLVVLSSKEDPTIKAKAFALGANDYLVK-LPDAAEL 117 Query: 117 REMVFACLYP-SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQP--PVQQVISHCRV 173 + F R E EERL + + ++ Q + P I + Sbjct: 118 IARIRYHSNAYINFLKRQEAEERLKEENLRLSAELDVTRRIQQMILPKDTELNQIEGLEI 177 Query: 174 NYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAH 233 A+D G D+ + DVT G + L+++ LL Sbjct: 178 AGFMEPASDVGGDYYDVLY-HNGSVKIGIGDVTGHGLESGMVMLMVQTAIRTLL------ 230 Query: 234 QNQRLPELGALLKQVNHLLRQA--NLPGQFPLLVGYYHRELKNLILVSAGLNATLN---T 288 NQ L+ +N + + L + + + S + + Sbjct: 231 -NQNETNPIQFLQVLNQTIYDNVQRINSDKNLTLILLDYQNNRIRF-SGQHEFIIVVRAS 288 Query: 289 GEHQVQIS--NGVPLGTLGNAY--LNQLSQRCDAWQCQIWGTGGRLR 331 G+ ++ + G P+G + +++ + + T G Sbjct: 289 GKVELIDTFELGFPVGLEEDITDFISEAEIYLNPGDGVVLYTDGITE 335 >UniRef50_A1ATK4 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=A1ATK4_PELPD Length = 480 Score = 190 bits (483), Expect = 7e-47, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 97/236 (41%), Gaps = 13/236 (5%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + +IL+ +DE+ R +L G T LA DG AL L+ + DL I DI MP M Sbjct: 1 MTLTRILVADDEESMRWVLSKALKRKGFTVDLADDGRQALALIQENSYDLAILDIKMPGM 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +GL LL+ IR V++++A +M + +A++ G D + KP DL+ + +V Sbjct: 61 SGLDLLDRIREMKSDLLVVIMTAEASMKNAVEAMKRGAYDYITKPF-DLDVIDAIVEKVG 119 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 +V ++ ++ + N + +Q + + +V +D Sbjct: 120 RAREIAGQVSLLKQELKEHYQVEKNIIGNSAAMQSIYKTIGKV-----------ADSDIT 168 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 L+ + + +A + A+ A+ LL+ +L + Sbjct: 169 ILIQGESGTGKEMVA-RAIHFNSGRLGKPFVAINCAAIPRDLLESELFGSERGAFT 223 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 50/194 (25%), Positives = 87/194 (44%), Gaps = 3/194 (1%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + +ILIV+DE R+L+ S G V A +G +AL+ + + L+I D+ MP M+ Sbjct: 1 MDTKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G ++ E IR P+L+++A D K L +G +D L KP K L V A L Sbjct: 61 GWEVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKP-EELIARVNALLR 119 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAA-AAKLLQELQPPVQQVISHCRVNYRQL-VAADK 183 ++ N + ++ F + VD+ L P +++ +N +Q+ Sbjct: 120 RAVVNQTTQTKQLHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQVFNRDQL 179 Query: 184 PGLVLDIAALSEND 197 + + L + Sbjct: 180 LLKIWGVDFLGDER 193 >UniRef50_Q39SU6 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=Q39SU6_GEOMG Length = 461 Score = 189 bits (481), Expect = 1e-46, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 87/226 (38%), Gaps = 14/226 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ++LIV+D+ R +L+ G + A G + L L P L++ D+ MP M G + Sbjct: 10 RVLIVDDDVSLRRVLEYNLQEEGYEVLTAGSGEEGLRLFEDGAPTLVVTDLKMPGMGGFQ 69 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 LL ++ R T V+VI+A + +A++ G D + KP L+ V L Sbjct: 70 LLREVKERFPDTVVIVITAFGAVEAAVEAMKAGAYDFITKPFNR-EALKLTVRKALDMQG 128 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVL 188 + + + + + PP+++V ++ D L+ Sbjct: 129 LSRENRRLREELSEREEFRS--------IIGISPPMEEVFRVID----RVADTDATVLIT 176 Query: 189 DIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQ 234 + + +A + + A+ A+ LL+ +L Sbjct: 177 GESGTGKELVA-RAIHNRSSRRAAPFVAINCAAIPRDLLESELFGH 221 >UniRef50_UPI0001744BDF two component, sigma54 specific, transcriptional regulator, Fis family protein n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001744BDF Length = 488 Score = 188 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 51/327 (15%), Positives = 101/327 (30%), Gaps = 56/327 (17%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 ++ ++ILI +D SL+ + G + ++G DAL+L PDL++ D+ MP Sbjct: 1 MIRQRILIADDTPASLSLISNVLEPRGYEILAVSNGRDALQLAPKAKPDLILLDVMMPGQ 60 Query: 65 NGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 +G + ++ PV+ +++ + + + ++G D + KP + + V Sbjct: 61 DGFMVCRELKAADETRNIPVIFVTSRNEIESVVRGFQVGAVDYIYKPFQ-AQEVVTRVAT 119 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAA-KLLQELQPPVQQVISHCRVNYRQLVAA 181 L S+ +++ A K Q L + + + Sbjct: 120 HLKLSLLTRELQQRNDELEQEILKRREAEQARDKAAQRLSSLATREAQRWGLGGFVGESP 179 Query: 182 DK----------------PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNG 225 L+ + + +A + +G A+ A+ Sbjct: 180 HLRRILEDINRLQQFGKTSVLITGESGTGKELVA-RAVHHHSPRADGPFVAVNCVAVPGE 238 Query: 226 LLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAG---- 281 L + L G F G + L G Sbjct: 239 LAESLFFGH----------------------LKGSFT---GATNDRKGYFELADGGTLFL 273 Query: 282 -----LNATLNTGEHQVQISNGV-PLG 302 + ATL +V V P+G Sbjct: 274 DEIGDMPATLQAKLLRVLEDGQVTPVG 300 >UniRef50_Q21UU9 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Proteobacteria RepID=Q21UU9_RHOFD Length = 474 Score = 188 bits (478), Expect = 3e-46, Method: Composition-based stats. Identities = 40/231 (17%), Positives = 90/231 (38%), Gaps = 14/231 (6%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + +IL+V+DE++ + T A G +AL+ + D++I D+ MP+M+ Sbjct: 1 MSARILVVDDEEIVIRSCVRILNDDLYTVDSAPGGFEALKKVDETAYDILILDVMMPKMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL++L+H++ R + V++++ + KA++LG D L KP D + L+ +V L Sbjct: 61 GLEVLQHVKERHPEIDVIMMTGLSEIQTAVKAMKLGAFDYLSKPF-DPDELKLVVNRALE 119 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + + + + + + + + + Sbjct: 120 RRQLMQENRKLKTEVSSKYR-----------FENIIGSSPPMQAVFGLIAKCAP-TNSTV 167 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQ 236 L+ + + +A + + + L LL+ +L + Sbjct: 168 LITGESGTGKEMIA-RAIHYNSLRKDQPFVTVDCNTLSENLLESELFGHTK 217 >UniRef50_B8HVZ9 Sensor protein n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HVZ9_CYAP4 Length = 566 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 51/272 (18%), Positives = 98/272 (36%), Gaps = 10/272 (3%) Query: 1 MTQPLVGK-QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDI 59 M++ K IL+V+D +L + S+ G + A DG AL+ TPDL++ DI Sbjct: 1 MSEHTTEKGTILVVDDTPTNLEVLFDFLSNAGFKVLFAEDGESALQKANYITPDLILLDI 60 Query: 60 AMPRMNGLKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 MP M+G + + ++ G PV+ ++A + D K LG D + KP++ + Sbjct: 61 LMPGMDGFETCQRLKQNGSTRSIPVIFLTALTDTVDKVKGFALGAVDFITKPLQ-YEEVL 119 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 V L +++E+ + AA + + +V R + + Sbjct: 120 ARVETHLRLQTLTRKLQEQNQRLEHEVQERKRAEAALQRQHQRSQLFAEVTLKIRQSLQL 179 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDV-TRAGHNGVLAALLLRALFNGLLQEQLAHQNQ 236 + ++ L + T +G L + + +E + Sbjct: 180 DQILQTTVTEVQKLLQADRVLIYRLWPNGTGSGVAEAALPGLPQIMGYTFPEEVFPEAAR 239 Query: 237 RLPELGALLKQVNHLLRQANLPGQFPLLVGYY 268 +L G + L Q + + Sbjct: 240 QLYCRGQI-----RELVDVEQDQQISACMVEF 266 >UniRef50_Q4K714 Sigma-54 dependent DNA-binding response regulator n=6 Tax=cellular organisms RepID=Q4K714_PSEF5 Length = 465 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 61/259 (23%), Positives = 111/259 (42%), Gaps = 22/259 (8%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + +L+V+DE LL S S G A +G+ AL++L DL+I D MP M+ Sbjct: 1 MTHNLLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVLEQEDIDLVISDWRMPGMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G +LL I+ R Q PV+V++A + + +++R G D + KP D++ L V L Sbjct: 61 GPQLLGEIKQRYPQLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPF-DIDELDITVSKALQ 119 Query: 126 PSMF---NSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 N R+ E + D++V + A ++LQ + + ++ Sbjct: 120 FRDILKDNQRMRAELAEHQQIDSLVGDSPAFRRVLQAVDSVRE---------------SN 164 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 L+ + + +A + + A+ A+ GLL+ ++ + G Sbjct: 165 ATILLTGESGTGKEMVA-RAIHKHGNRADKPFVAVNCAAIPEGLLESEMFGHRKGAFT-G 222 Query: 243 ALLKQVNHLLRQANLPGQF 261 A+ +V +QA+ F Sbjct: 223 AVADRVGR-FQQADKGTLF 240 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 187 bits (476), Expect = 4e-46, Method: Composition-based stats. Identities = 44/211 (20%), Positives = 93/211 (44%), Gaps = 9/211 (4%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M +P+ ++LI+ED+ L+ + G + + A+DG + LEL +PD +I DI Sbjct: 1 MKRPI---KVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIM 57 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 +P++NG ++ + IR P+++++ D+ K L +G +D ++KP D N L V Sbjct: 58 LPKLNGWEVCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPF-DPNELIARV 116 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 L ++ + ++ + M + ++ P ++ + +N +Q++ Sbjct: 117 KTVLRRTILSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLT 176 Query: 181 ADKPGL-VLDIAALSENDLAFYCLDVTRAGH 210 + V + +DV Sbjct: 177 RQQLLDRVWGYEFNGDPR----TVDVHIKRI 203 >UniRef50_Q7M9T6 TWO-COMPONENT RESPONSE REGULATOR n=1 Tax=Wolinella succinogenes RepID=Q7M9T6_WOLSU Length = 330 Score = 186 bits (474), Expect = 8e-46, Method: Composition-based stats. Identities = 64/319 (20%), Positives = 114/319 (35%), Gaps = 32/319 (10%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+VEDE++ + +L + +A++G +ALEL TPD+++ D+ MP M+G++L Sbjct: 11 LLLVEDEKMSQEMLARLLEPRVSRLWIASNGKEALELYQENTPDVVLTDLVMPEMDGMEL 70 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 +E I+ + V++ +A + + +A+ LGV L KP+ L E + C Sbjct: 71 IERIKGLNPEATVVISTAFYELGFLMRAIELGVFGYLTKPLS-FQGLEETLRKCHRRVEL 129 Query: 130 NSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVI--------------------- 168 EE E D A + +EL ++ Sbjct: 130 LRAHEELEVKNHHLKIAYDQLREAKEQEKELFIYKERYHQSHQEEAFKKQIKLMRSDLSN 189 Query: 169 ---SHCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFN- 224 S N G L E FY +D G + LA++ + N Sbjct: 190 SYESGIFFNLFYEPLDILSGDAYGSVRLGEGRCLFYAIDAMGKGLSASLASIQSVSFLNY 249 Query: 225 GLLQEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNA 284 L + + + A L + L L + + + G+ Sbjct: 250 QLRPSKALDEFDFEAYIQAFLSFIRTQLLNNEL---LSASFILMEEKGEKIRYALFGMPP 306 Query: 285 TLN---TGEHQVQISNGVP 300 G+ + +SN P Sbjct: 307 LWVMDERGKVRELVSNNPP 325 >UniRef50_Q7MQP8 Putative uncharacterized protein n=1 Tax=Wolinella succinogenes RepID=Q7MQP8_WOLSU Length = 573 Score = 186 bits (473), Expect = 9e-46, Method: Composition-based stats. Identities = 64/346 (18%), Positives = 127/346 (36%), Gaps = 22/346 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +L VED+ R L + AA+G + L+ DL+I D MP M+G++ Sbjct: 18 TLLYVEDDIPTRRFLKRRLEEIFGVVAEAANGEEGLKRFLQGGIDLVISDNIMPFMDGIE 77 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 ++ IR + P+++ +A + + +A+ LGV + KP+ ++ L + + + Sbjct: 78 MIREIRRVDTRLPIILTTAFIDTDYLMEAINLGVTQFVAKPIS-MDLLHNAIQMAIQRVV 136 Query: 129 F----NSRVEEEERLFRDWDAMVDNPAAAAKLLQE--------LQPPVQQVISHCRVNYR 176 E+E L R D +A+ + LQ + ++ Sbjct: 137 LDNLTRKAKEQEIELLRFQDRYHSLQQESARRKERNLIKNDHYLQTIQGKEGEEWVLDAL 196 Query: 177 QLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQ 236 G + L E + +D G + + L A N L+ E++A + Sbjct: 197 HRSLEILSGDSYSVRGLDEGRALLFIVDGMGKGLSASVTTTLSIAFLNYLIDERIAQGAR 256 Query: 237 RLPE--LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATL---NTGEH 291 +G L+ + L + + + + + L ++ G+ + L + GE Sbjct: 257 VELGSLVGDYLRFIQKELLEEEI---ISAGFYDFDFKRERLSYITFGMPSMLWVNSQGEC 313 Query: 292 QVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 + S+ PL L Q + + + G +L E Sbjct: 314 ERIKSSSPPLMKYSLPPLPQ-EICIQDLEKILLYSDGLNEALLDEE 358 >UniRef50_D1N7N4 Response regulator receiver modulated serine phosphatase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7N4_9BACT Length = 537 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 56/345 (16%), Positives = 121/345 (35%), Gaps = 37/345 (10%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL V+DE+ LL+S S V D + A D+++ DI M ++G + Sbjct: 6 KILAVDDEKFNLLLLESCLQSESCDLVTCNDALKAFSEFKKADFDVILLDILMDGIDGFE 65 Query: 69 LLEHIRNRGDQTPVLVISAT-----ENMADIAKALRLGVED----VLLKPVKDLNRLREM 119 + + IR+R + P++ +++ + + A D L K L E Sbjct: 66 VRQLIRSRNKKIPIIFLTSLLDDINSTLVNRITA------DQYSYYLNKSFNKKT-LIEK 118 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLV 179 + + + + + A A ++ + + P Q+ ++ Sbjct: 119 IEQAV---QTYRESAAANGFLQ---KIESDLALAGEVQRLVLPNWCQINDQLISSFLYEP 172 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 G + + +++ D+ G L + L+A LL E + Sbjct: 173 NFKVSGDIFEFYRIADGRHLVVLGDIAGHGVQAALYMMALQAFLKMLLAEIAPEE----L 228 Query: 240 ELGALLKQVNHLLRQANLP-GQFPLLVGYYHRELKNLILVSAGLNATL----NTGEHQVQ 294 ++ ++ ++N +R +V + +L +AG + + GE + Sbjct: 229 QVHQVMNRINEFVRNDLNGESYMTCMVALFDFRRNHLTFHNAGHPGLICCSPSRGEAREI 288 Query: 295 ISNG---VPLGTLGNAYL---NQLSQRCDAWQCQIWGTGGRLRLM 333 ++G +P+G + + + + I T G L L Sbjct: 289 SADGRGSIPIGWSRDLPYKEEDNIDFDFEDDSIFISYTDGLLDLS 333 >UniRef50_A7HDM5 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HDM5_ANADF Length = 532 Score = 186 bits (473), Expect = 1e-45, Method: Composition-based stats. Identities = 52/236 (22%), Positives = 96/236 (40%), Gaps = 11/236 (4%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +L++ED+ R L + ++ G +GV+AL PD ++ D+ +P +G + Sbjct: 51 TVLVIEDDDDAREALCEFLATAGYRVRPLRNGVEALAAAANSRPDAVLLDLVIPEPDGFE 110 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 +L IR R + PV+V+SA D+ +A++LG D L KP D++ L ++ L Sbjct: 111 VLRRIRERDPRVPVIVMSALSQAEDVVRAMKLGANDYLPKPF-DVSELNLVLRRALEGPG 169 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVL 188 E R D + +A P + + R + D P L++ Sbjct: 170 RRPPDVAESRAAATTDPGDGDLLPSA-------PLSGPMERVWELVSR-IADTDVPVLLI 221 Query: 189 DIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ-LAHQNQRLPELGA 243 + + ++ +A + T + AL LL+ + H+ A Sbjct: 222 GESGVGKDVIARR-IHATSHRSGRPFVKINCAALPGELLESELFGHEKGAFTGAHA 276 >UniRef50_C6WY59 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Methylophilaceae RepID=C6WY59_METML Length = 457 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 63/297 (21%), Positives = 115/297 (38%), Gaps = 27/297 (9%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M+ K IL V+DE LL+ G + A DG +ALE++ D ++ D+ Sbjct: 1 MSD--STKYILAVDDEPSMLRLLEISLRQAGYQPLTARDGREALEVINAQQVDCVVTDLH 58 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MPRM+GL+LL+ +R + PV++++A + A++ G D +L+P DL L + Sbjct: 59 MPRMDGLQLLKEVRKTDTELPVIIVTAQGEIGSAIDAMKNGASDYILRPF-DLAELELAI 117 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 L SR+ E R R+ A + +Q L ++QV Sbjct: 118 KRAL----SFSRLVVENRFLREDKADTTGLIGNSPAMQHLAESIRQVAP----------- 162 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 LV + +A + +N + A+ A+ + +L+ +L + Sbjct: 163 EKATVLVAGETGTGKELVA-RAIHAASPRNNALFVAVNCAAIPHEMLESELFGHEKGAFT 221 Query: 241 LGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISN 297 GA+ +++ + + + + A L L + N Sbjct: 222 -GAVKERIGKFELADGGT-------LFLDEVTEMPMQLQAKLLRALQENVIERLGGN 270 >UniRef50_B5YFU9 Sensor protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YFU9_THEYD Length = 356 Score = 185 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 3/168 (1%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + ILIV+D LL + G T A DG +AL+ + PDL+I D+ MP+M+ Sbjct: 4 SNQTILIVDDNIDTVELLRKRLKAEGYNTEEAYDGEEALKKVYEVYPDLIILDVMMPKMD 63 Query: 66 GLKLLEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G ++ + ++ P+++++A ++ K +G +D + KP D L V + Sbjct: 64 GYEVCQRLKTDDRTKFIPIIMLTAKSDVESKVKGFDIGADDYVPKPF-DYRELSARVRSL 122 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHC 171 + +V EEE+ + + + ++V + Sbjct: 123 ITRKETAEKVIEEEKTESVRKLIDSLSHEIRNPIVSIAGFTKKVYDNL 170 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 49/223 (21%), Positives = 89/223 (39%), Gaps = 30/223 (13%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +++LIV+DE R +L++ S +G V A+DG +AL L PD++I DI MP+++ Sbjct: 13 TKEKVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLD 72 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G + + IR P+++++A ++AD L LG +D ++KP L + A L Sbjct: 73 GYGVCQEIRK-DSDVPIIMLTALGDVADRITGLELGADDYVVKPFSP-KELEARIRAVLR 130 Query: 126 PSMFNS----------------RVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVIS 169 + + ++ +R + + LL+ L Q S Sbjct: 131 RTNKAAFSSHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFS 190 Query: 170 HCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNG 212 + V E + +DV + Sbjct: 191 RADILQE----------VWGY--TPERHVDTRVVDVHISRLRA 221 >UniRef50_A0LJL7 Two component, sigma54 specific, transcriptional regulator, Fis family n=21 Tax=Bacteria RepID=A0LJL7_SYNFM Length = 476 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 61/307 (19%), Positives = 111/307 (36%), Gaps = 43/307 (14%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + +IL+V+DE L G +AA G +ALE L TPDLM+ DI MP M+ Sbjct: 1 MKPKILVVDDEISILQSLRGVLQDEGYRIGVAASGEEALEELRRDTPDLMLLDIWMPGMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL +LE I+ PV++IS N+ KA R+G D + KP+ E + + Sbjct: 61 GLAVLEEIKKSHAHLPVIIISGHGNIETAVKATRMGAFDFVEKPLS-----LERILVSIK 115 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 ++ R+EEE L+R + ++ ++ L+ +++ + Sbjct: 116 NALDFHRLEEENLLWRQKAHRTSHMTGRSEAVESLREQIRRAAP-----------TNATV 164 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 L+ + LA + + + + A+ L++ +L + Sbjct: 165 LITGENGTGKE-LAARMIHQLSKRSHRPMVEVNCAAIPEDLIESELFGHEKG-------- 215 Query: 246 KQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVPLGTLG 305 G + R + + G G+ + L L Sbjct: 216 -----------------AFTGAHERRRGRFDVANGGTLFLDEIGDMS-LRTQAKILRILQ 257 Query: 306 NAYLNQL 312 ++ Sbjct: 258 EQVFERV 264 >UniRef50_Q2LRZ0 Sigma-54 dependent transcriptional regulator n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LRZ0_SYNAS Length = 473 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 59/299 (19%), Positives = 114/299 (38%), Gaps = 28/299 (9%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + +IL+V+D+ R L S G A++G++AL+ + +I D+ MP M Sbjct: 3 MKEARILVVDDDTSMRMALCETLESCGYCIETASNGLEALKKFRKGAFEAVITDMRMPGM 62 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK--DLNRLREMVFA 122 G+++L+ I+ ++PV++I+A + +A++ G D ++KP D+ + + V A Sbjct: 63 GGMEVLKTIKKISPESPVILITAYGTVNTAVEAMKEGASDFIMKPFSLEDIEFVVKNVMA 122 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 F E+ F D + + ++ L E V Q + Sbjct: 123 TYEEKEFRESKPVEKMTFTDREIITEDEKILGIL--EFLKTVAQ--------------SK 166 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 L+ + + A Y + H A+ A+ + LL+ ++ E G Sbjct: 167 SSVLIQGESGTGKELFARYLYLHSSRRHM-PFVAINCAAIPDNLLESEMFG-----FEKG 220 Query: 243 ALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGVPL 301 A + + + L LL + + A L + E +PL Sbjct: 221 AFTGAIQRKVGKFELANGGTLL---LDEVTEMTPHLQAKLLRVIQEKEIDRLGGK-MPL 275 >UniRef50_A0LLZ0 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Deltaproteobacteria RepID=A0LLZ0_SYNFM Length = 466 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 50/230 (21%), Positives = 95/230 (41%), Gaps = 15/230 (6%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFS-SLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 + + +LIV+DE+ LL LG +A+ G +AL +L DL++ D+ MP Sbjct: 1 MTKETLLIVDDEEDLLQLLKRSLEPDLGCEVKVASSGGEALNVLEREPVDLLLVDMKMPE 60 Query: 64 MNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 MNGL+LLE +R V++++A + +A+R+G D + KP D L + Sbjct: 61 MNGLELLEQVRAGYPWLTVVMMTAHGCIELAVQAIRMGAYDFITKPF-DHETLVLSLNKA 119 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 L S +R + +A + +A++ + + + D Sbjct: 120 LERSRLLRENLNLQRHVQMHEAFQNLVGKSARMQR------------VYEAIQMVAKTDL 167 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAH 233 L+ + ++ LA + + A+ A+ +L+ +L Sbjct: 168 TVLITGESGTGKD-LACRAIHALSQRRSNPFVAVNCPAIPENILESELFG 216 >UniRef50_B8JAZ2 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Anaeromyxobacter RepID=B8JAZ2_ANAD2 Length = 481 Score = 184 bits (469), Expect = 3e-45, Method: Composition-based stats. Identities = 57/300 (19%), Positives = 109/300 (36%), Gaps = 28/300 (9%) Query: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 +P G ++L+V+D++ R+ G A DG A + + + D+++ D+ MP Sbjct: 24 EPPTGGKVLVVDDQKNMRATTAILLRQAGHVVEEAEDGASATQRVQHESFDVVLTDLRMP 83 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 ++G+++L ++ +T V+V++A + +A+R G D L KP K+ L V Sbjct: 84 TVDGMEVLRAVQQASPETQVIVMTAYGTIESAVEAIRRGAYDFLAKPFKESEVLL-RVAK 142 Query: 123 CLYPSMFNSRV---EEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLV 179 L V EE R + +V A ++L + + Sbjct: 143 ALEKRRLLGEVNLFAEEFRKRYGLEHIVGRSPAMREVLDRVLR---------------VA 187 Query: 180 AADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLP 239 D LV + + +A L VT + + A+ + LL+ +L + Sbjct: 188 PTDATVLVTGESGTGKELVA-RALHVTSRRSDKPFVPVNCAAITDTLLESELFGHARGAF 246 Query: 240 ELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISNGV 299 + + + G L + A L L GE + + Sbjct: 247 TGA---TRARRGMFEEANGG--TLFIDEIGETSPGF---QAKLLRALQEGEIRRVGESSP 298 >UniRef50_B4VT49 Sensor protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VT49_9CYAN Length = 467 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 79/187 (42%), Gaps = 4/187 (2%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M + +LIVED S L ++ + G ++A DG A++ + PDL++ D+ Sbjct: 1 MDKKAAQGNLLIVEDNPTNLSFLFNYLTKSGFKVLVATDGKTAIQRVEAAQPDLILLDVM 60 Query: 61 MPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP M+G ++ + +++ PV+ ++A + + +G D + KP++ + Sbjct: 61 MPGMDGFEVCKRLKSSPSMRDIPVIFMTALSDTLNKVHGFEIGAVDYITKPIQP-EEVVS 119 Query: 119 MVFACLYPSMFNSRVEEEER-LFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 + L ++ + L + + L +LQ Q+I +++ Sbjct: 120 RIQTHLTLRNLQKELQAKNEHLLQSQQQEKQRSLELEEALHKLQQTEVQLIQAEKMSSFG 179 Query: 178 LVAADKP 184 +AA Sbjct: 180 KIAAGIA 186 >UniRef50_Q1JYH3 Sensor protein n=2 Tax=Proteobacteria RepID=Q1JYH3_DESAC Length = 1152 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 46/219 (21%), Positives = 85/219 (38%), Gaps = 24/219 (10%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+V+DE V +L + +A G AL+L+ TPDL++ DI MP M G ++ Sbjct: 719 ILVVDDEPVNLQVLVNQLHVARYRVRIANSGQQALDLVEEETPDLILLDIMMPHMTGYEV 778 Query: 70 LEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 + +R + Q PV++++A ++D+ + + G D + KP + L V L Sbjct: 779 CQRLRRTYNAAQLPVIMLTARSRVSDVVQGFQAGANDYVAKPFSR-DILLARVRTQLQLG 837 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHC-------RVNYRQLVA 180 + E RL ++ + + + L + V +++ A Sbjct: 838 RAYQTLAENMRLKKELEQRQQTELELRQTQRRLAQLLDSVDDMVITVNESREISFYNHSA 897 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLL 219 A G + ++ L G V + Sbjct: 898 AQLLG-------VDDDALL-------GHGLEDVFTKAWV 922 >UniRef50_B7K304 Response regulator receiver modulated serine phosphatase n=4 Tax=Cyanobacteria RepID=B7K304_CYAP8 Length = 393 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 64/347 (18%), Positives = 124/347 (35%), Gaps = 28/347 (8%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSL-GATTVLAADGVDALELLGGFTPDLMICDI 59 MT + +L+++D+ + + + D A++ P +++ D+ Sbjct: 1 MTDSPIN--VLLIDDQPMIGEAIRRMLGTEPDIIFNYCRDPTQAIKRALEVKPTVILQDL 58 Query: 60 AMPRMNGLKLLEHIRNRG---DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRL 116 MP + GL L+ +R + + P++V+S+ E+ AKA LG D L+K + D L Sbjct: 59 VMPDIEGLTLVRFLRAKDAPTHEIPLIVLSSKEDPQIKAKAFNLGANDYLVK-LPDKAEL 117 Query: 117 REMVF-ACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQ--VISHCRV 173 + R E EERL + + KL Q + P ++ I + Sbjct: 118 IARIRYHSTAYINLLKRKEAEERLKEENLRLSAEIEITRKLQQMILPKEEELKQIEGLDI 177 Query: 174 NYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAH 233 A D G D+ + DVT G + ++++ L+ Sbjct: 178 AGYMEPATDVGGDYYDVLH-HNGRVKIGIGDVTGHGLESGVLMIMVQTAIRTLM------ 230 Query: 234 QNQRLPELGALLKQVNHLLRQA--NLPGQFPLLVGYYHRELKNLILVSAGLNATLN---T 288 ++ + L VN + + + L + E L L S + + Sbjct: 231 -SRNETDPLKFLAVVNRTIYENVKRINSDKNLTLSLLDYENNCLRL-SGQHESIIVVRSG 288 Query: 289 GEHQVQIS--NGVPLGTLGN--AYLNQLSQRCDAWQCQIWGTGGRLR 331 G+ ++ + G P+G + +L Q + + T G Sbjct: 289 GKIEIIDTIDLGFPVGLEEDISEFLGQTEIYLNPGDGVVLYTDGITE 335 >UniRef50_B6EQT4 Putative response regulator n=1 Tax=Aliivibrio salmonicida LFI1238 RepID=B6EQT4_ALISL Length = 506 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 65/327 (19%), Positives = 117/327 (35%), Gaps = 27/327 (8%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ILIVED+ + L ++ + L +G +AL+ L T DL++ DI MP+M GL+ Sbjct: 145 HILIVEDDVIQCKLYSAYLNQQ-FDITLTNNGKEALDFLKNNTVDLIVSDIQMPKMGGLE 203 Query: 69 LLEHIRNR-GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 L +H+ P + +S ++ + A+ LG++D L KP+K ++L + L Sbjct: 204 LRQHLEQDKDISIPFIFLSHLQDTTTVNSAVDLGIDDYLEKPIKK-DQLLYTIQRVLAR- 261 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLV 187 ++++ V+ K+ L P ++ H ++ +Q G Sbjct: 262 --------FNQVYQSLSKQVNQ-----KITHTLLPQIEIHSPHWKLAIQQRNTGHGGGDF 308 Query: 188 LDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQ 247 + ++ DV + A GL+ QN L LL Sbjct: 309 VLSMD-DDDITQILLADVMGHDESAKFFAYAYAGYIRGLM------QNSDLKHPAQLLST 361 Query: 248 V-NHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN--TGEHQVQISNGVPLGTL 304 + N+ + L L + SAG ++ + G G L Sbjct: 362 LSNNAFKDQILSQTMLTSCCVSLLNSNTLAISSAGHPPPIHITNRGLSIINVEGTLPGLL 421 Query: 305 GNAYLNQLSQRCDAWQCQIWGTGGRLR 331 N + + + T G Sbjct: 422 PNTTYQETKITLQQKERIAFFTDGLFE 448 >UniRef50_Q30WZ9 Two component transcriptional regulator, Fis family n=2 Tax=Desulfovibrionaceae RepID=Q30WZ9_DESDG Length = 465 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 87/241 (36%), Gaps = 15/241 (6%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + ++LIV+DE R L G A G + L+L PDL+ DI +P M+ Sbjct: 1 MNARVLIVDDEDGIRFSLRGILEDEGYEVAEAETGEEGLKLATETPPDLIFLDIWLPGMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL++L+++R PV++IS N+ A++ G D + KP+ L ++ L Sbjct: 61 GLEVLDNLRTADASLPVIMISGHGNIETAVNAIKKGAYDFIEKPLS-LEKVVISANKALE 119 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + + +A I R ++ D Sbjct: 120 YYRLRRENQALRSRLTQSTTVEMTGNSA-------------SIVELRGQIGRVAPTDAWV 166 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 L+ + +A + + + L A+ A+ L++ +L + Sbjct: 167 LITGENGTGKE-IAARSIHASSRRKDKPLVAVNCAAIPEELIESELFGHEKGAFTGAETA 225 Query: 246 K 246 K Sbjct: 226 K 226 >UniRef50_A7BVW4 Adenylate/guanylate cyclase n=1 Tax=Beggiatoa sp. PS RepID=A7BVW4_9GAMM Length = 594 Score = 184 bits (467), Expect = 5e-45, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 75/181 (41%), Gaps = 9/181 (4%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M Q ++LIV+D V +L + ++A +G A+ + PD+++ DI Sbjct: 1 MNQ--EQNKVLIVDDNSVNLKILSRFLKKAHFEVIMAKNGESAITQVKNLKPDIILLDIM 58 Query: 61 MPRMNGLKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP M+G + ++ PV+ ++A E+ D K ++G D + KPV+ + + Sbjct: 59 MPGMDGFETCRCLKANEESKDIPVIFMTALESTPDKVKGFKIGAIDYITKPVQ-MEEVLA 117 Query: 119 MVFACLYPSMFNSRVEEEERLFRD----WDAMVDNPAAAAKLLQELQPPVQQVISHCRVN 174 V L +R+ E+ + + A+ +++ + + + Sbjct: 118 RVNTHLTIRHLQNRLLEQNEYLKQEITKRQQAEEELRKFARAVEQSASAIVITDINGTIE 177 Query: 175 Y 175 Y Sbjct: 178 Y 178 >UniRef50_D2MLD9 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MLD9_9BACT Length = 480 Score = 183 bits (466), Expect = 6e-45, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 102/266 (38%), Gaps = 25/266 (9%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + + +LI++DE + R + + G A++G D ++ + DL+I D+ MP + Sbjct: 1 MTRSVLIIDDEPLMRLSMLDALKAEGYHVQGASNGEDGIQKIKTSRYDLVITDLRMPGSD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL+++ + +T V+VI+A ++ +A++LG D + KP ++ L V Sbjct: 61 GLQVVRVCKEYSSETEVIVITAHGSVDTAVQAMKLGAHDYVTKPF-PMDELLMTVDRATK 119 Query: 126 PSMFNSRVEEEERLFR---DWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 + ++D MV ++L+++ + + D Sbjct: 120 VQALRQENTALRQELEGKFNFDGMVGKNERMRQVLEKV---------------KLVATTD 164 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 L+ + + +A + L + AL LL+ +L + G Sbjct: 165 ATVLIFGESGTGKEVIA-NAIHRNSPRCGQALIKVSCAALPETLLEAELFGHER-----G 218 Query: 243 ALLKQVNHLLRQANLPGQFPLLVGYY 268 A + L + L + L + Sbjct: 219 AFTGALKQRLGRFELAHKGTLFLDEI 244 >UniRef50_Q1D7F8 Sigma-54 activator protein ActB n=7 Tax=Cystobacterineae RepID=Q1D7F8_MYXXD Length = 553 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 61/274 (22%), Positives = 108/274 (39%), Gaps = 29/274 (10%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+DE+ R+ L S G AA G ALE+L G + D ++ D+ MP M+GL++ Sbjct: 6 VLVVDDEEAVRTFLSELLGSAGYQVRCAASGTQALEMLSGGSFDAVLLDVVMPEMSGLEV 65 Query: 70 LEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSMF 129 L ++ G PV+V+SA D +A+++G D L KP + + L++ + L Sbjct: 66 LRRYQSMGGGAPVIVLSALAGADDAVRAMKMGASDYLAKPFGN-DELQDALARALGTRAP 124 Query: 130 NSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVLD 189 + R +VD+ Q + + R ++ D P L+L Sbjct: 125 ERQAVAPILPSRTVLPVVDSAQE-----QRVLISTSPAMRRARALVERIADTDVPVLLLG 179 Query: 190 IAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQ------------- 236 + + +A + N + AL LL+ +L + Sbjct: 180 ESGTGKEVIA-REIHARSQRRNRPFIKVNCAALPGELLESELFGHERGAFTGATAEKPGK 238 Query: 237 ---------RLPELGALLKQVNHLLRQANLPGQF 261 L E+G + ++ L Q +F Sbjct: 239 FELADQGTIFLDEIGEMAIRLQAKLLQVLQDEEF 272 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 60/122 (49%), Gaps = 2/122 (1%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + I++V+DE+ R L+ + + G + A +G+ ALELL DL+I DI MP M Sbjct: 1 MNKNTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNM 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +G++ IR P++++SA D L G +D + KP L L V + L Sbjct: 61 DGIEACTKIREE-KNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPL-ELIARVKSQL 118 Query: 125 YP 126 Sbjct: 119 RR 120 >UniRef50_Q1ITP4 Two component, sigma54 specific, transcriptional regulator, Fis family n=8 Tax=Bacteria RepID=Q1ITP4_ACIBL Length = 485 Score = 183 bits (465), Expect = 8e-45, Method: Composition-based stats. Identities = 61/293 (20%), Positives = 113/293 (38%), Gaps = 23/293 (7%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + ++ILIV+DE++ R L G + A +G L L +PDL++ D+ +P M Sbjct: 1 MPSEKILIVDDERLVRWSLRQKCEEWGYHVIEADNGSAGLRLARHESPDLVLLDVRLPDM 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 GL++L+ ++ GD V++I+A + D+ AL+LG D + KP+ D + L V L Sbjct: 61 GGLEILKQLKENGDARAVIMITADPQLEDVKLALKLGAYDFVGKPL-DFDELSVAVKNAL 119 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 + + VE R D + K+ + + + + Sbjct: 120 ETTRLRTEVESLRGEVRRRHGYHDIVGVSQKMTELMV-----------FVAKIATSEATT 168 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQ-EQLAHQNQRLPELGA 243 LV + ++ +A + A+ A+ L++ E H+ + A Sbjct: 169 ILVQGESGTGKDLVA-KAIHYQSRRQEKPFVAINCSAIPETLMEAELFGHEKGAFTDAKA 227 Query: 244 LLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQIS 296 + K + A+ F +G L+ A L L + Sbjct: 228 MKKGL---FEAADGGTLFLDEIGELSP------LLQAKLLRVLEDQVIRRVGG 271 >UniRef50_D1CFK1 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Bacteria RepID=D1CFK1_THET1 Length = 466 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 99/240 (41%), Gaps = 20/240 (8%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 + IL+ +D+ R++L G +A DG ++ + +PDL++ D+ MP+++G Sbjct: 5 NRHILVADDDPSIRTILRDLLEDEGYQVSIALDGEQVIDQVQQSSPDLILMDVRMPKIDG 64 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 +++L+ +R RG P++V++A N + KA++LG D + KP DL+ + + Sbjct: 65 IEVLKQLRARGMNVPMIVMTAFGNSSTTIKAMQLGAWDYITKPF-DLDDITRTINRFFEQ 123 Query: 127 SMFNSRVEEEERLFRDWD---AMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 +++V D ++ N ++ + + + A+D Sbjct: 124 QKLSTKVRGRAEEAVAPDKTSRIIGNSPVMQEVYKTI---------------GLVAASDA 168 Query: 184 PGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGA 243 L+ + +A + G L + AL LL+ +L + Sbjct: 169 TVLITGETGTGKELVAET-IHYNSTFSQGPLVKVNCAALPETLLESELFGHEKGSFTGAD 227 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 183 bits (465), Expect = 9e-45, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 80/209 (38%), Gaps = 12/209 (5%) Query: 4 PLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPR 63 + ++L+ +D+ R ++ +F + A DG +ALE++ PD++I D+ MP+ Sbjct: 29 AMSTMKVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQ 88 Query: 64 MNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 ++G + IR + TP+++++A + D L LG +D + KP + + A Sbjct: 89 LDGFEACREIRKKW-DTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSP-REIVARIRAI 146 Query: 124 LYPSMFNSRVEEEERL------FRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 + +VE+E L D A + + ++ + Sbjct: 147 MRRLQPKPKVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSV 206 Query: 178 LVAADKPGLVLDIAALSENDLAFYCLDVT 206 V + +DV Sbjct: 207 WSREQLLEQVWGFDYFGD----VRTIDVH 231 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 84/216 (38%), Gaps = 16/216 (7%) Query: 1 MTQPL------VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDL 54 M+Q + Q+L+V+DE R+LL + + G A +G +ALE+ D+ Sbjct: 1 MSQSVKAGGGVPKLQVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDI 60 Query: 55 MICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLN 114 ++ D+ +P M+G ++ + IR + +L+++A D L +G +D L KP + Sbjct: 61 ILLDLMLPDMDGWQVCKKIREKD-HVAILMLTARSETKDKVYGLGIGADDYLTKPFEP-E 118 Query: 115 RLREMVFACLYPSMFNSRVEEEERLFRD-WDAMVDNPAAA---AKLLQELQPPVQQVISH 170 L V++ + S + +E ++ ++ Q IS Sbjct: 119 ELLARVYSLIRRSAITQSIRRQEAALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISL 178 Query: 171 CRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVT 206 + R + L+ E +D Sbjct: 179 AKSEQRAFSREELVNLIWGDEYEGE----VRVVDTH 210 >UniRef50_C0ZKW7 Two-component response regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZKW7_BREBN Length = 459 Score = 183 bits (464), Expect = 1e-44, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 95/236 (40%), Gaps = 14/236 (5%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +ILIV+DE FR LL S G TT+ A+DG+ A +L+ T +++ D+ MP M+GL Sbjct: 6 RILIVDDEADFRHLLTSRLKRKGYTTLEASDGISAQKLVTSETIHVILLDLKMPGMDGLS 65 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 L+ + ++V++ + +A++ G D L KP LN L ++ + Sbjct: 66 FLQWCKETSPAIQIIVVTGHGTIETAIEAMKRGAYDYLTKPYN-LNELEVLISKAVEKQQ 124 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVL 188 ++ A + L+E+ ++V + D L+ Sbjct: 125 LTEENQQLREALSTNGKTTFQIVAESPKLKEVLATAKRV-----------ASTDFLVLLK 173 Query: 189 DIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ-LAHQNQRLPELGA 243 + ++ +A + + + L A+ +L+ + H+ A Sbjct: 174 GESGTGKDVIA-RLIYEYSERASKAFVPINLGAIPETMLESELFGHEKGAFTGATA 228 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 44/191 (23%), Positives = 80/191 (41%), Gaps = 5/191 (2%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K+ILIV+DE+ R++L + G A DG L+L DL+I D+ +P+ +G Sbjct: 7 KRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDGW 66 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 +L I+ +TPV++++A ++ D +G +D + KP + L V + L + Sbjct: 67 SILREIKK-YTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNN-KVLLARVKSLLRKT 124 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ-LVAADKPGL 186 E D + ++ EL P ++ + N + L Sbjct: 125 NNMVESIIEIGDLVINDTSHSVSNSKGEI--ELAPKEYDLLVYLIKNNKIALSREKLLNE 182 Query: 187 VLDIAALSEND 197 V L ++ Sbjct: 183 VWGYDFLGDDR 193 >UniRef50_B2JAB7 Response regulator receiver modulated PAS/PAC sensor protein n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2JAB7_NOSP7 Length = 294 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 47/203 (23%), Positives = 82/203 (40%), Gaps = 5/203 (2%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L IL+V+D LL + + LG +G AL+ PDL++ DI MP M Sbjct: 32 LPKANILVVDDTPDNLRLLSAMLTQLGYEIRRVINGPTALKTAQAAPPDLILLDIMMPEM 91 Query: 65 NGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 NG ++ +H++ PV+ ISA + + D KA +G D + KP + + V Sbjct: 92 NGYEVCQHLKASEITRDIPVIFISALDEVFDKVKAFAVGGVDYITKPFSE-EEVFARVEN 150 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 L ++ E+ L + + +A +L Q + I N + + + Sbjct: 151 NLTIRRLQKQLTEQNVLLQQEISDRQKAESALRLSQFYLDKFRDSIFFINSNAQLVYVNE 210 Query: 183 KPGLVLDIAALSENDLAFYCLDV 205 +L + + L D+ Sbjct: 211 AACQILGYSR--KELLTMTVHDI 231 >UniRef50_B8DQD3 Two component, sigma54 specific, transcriptional regulator, Fis family n=5 Tax=Desulfovibrionales RepID=B8DQD3_DESVM Length = 515 Score = 182 bits (463), Expect = 2e-44, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 90/234 (38%), Gaps = 14/234 (5%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 +IL+V+DE + R L G T AA+G +ALELL G DL++ D+ M M+G Sbjct: 36 PARILVVDDEAIARDNLALALGRQGHETFTAANGAEALELLAGADFDLVLTDLMMQGMDG 95 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 L LL +R R T V+V++ + +A+ G L KP DLN R +V L Sbjct: 96 LDLLRAVRMRHPDTEVVVVTGYPTVKTAVEAMHAGAYHYLPKPY-DLNEARALVQKALEK 154 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 V R+ V +A + + Q+ +D L Sbjct: 155 RRLRQEVARLREQLRERSLPVPLLGSAPCMQA------------LKRTIAQVAPSDVTVL 202 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 +L + LA + + A+ A LL+ +L Q Sbjct: 203 ILGETGTGKE-LAARMVHLFSRRSEARFLAINCGAFNEELLESELFGHEQGAFS 255 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 87/223 (39%), Gaps = 30/223 (13%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 ++IL+V+DE R +L++ + +G + A++G +AL + P L++ D+ MP+++ Sbjct: 4 QKEKILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLD 63 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G + + +R P+++++A + D L +G +D ++KP L + + L Sbjct: 64 GYGVCQELRKE-SDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSP-KELEARIRSVLR 121 Query: 126 PSMFNS----------------RVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVIS 169 + + +++ +R + V LL+ L + S Sbjct: 122 RADKITTNLGVPNSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFS 181 Query: 170 HCRVNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNG 212 + V E + +DV + Sbjct: 182 RASILQE----------VWGY--TPERHVDTRVVDVHISRLRA 212 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 182 bits (462), Expect = 2e-44, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 76/180 (42%), Gaps = 14/180 (7%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + ++ILIV+DE +++ S+ G + A +G +AL PDL++ D MP M+ Sbjct: 1 MARKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMS 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G+++L IR + Q P+++++A D GV+D ++KP L L + L Sbjct: 61 GIEVLREIRKK-SQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFS-LRELSARIKTILK 118 Query: 126 PSMFNSRVEE------------EERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRV 173 + EE +R +D KLL+ + S + Sbjct: 119 RLEAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSRLEL 178 >UniRef50_B8FI60 Putative two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Desulfobacteraceae RepID=B8FI60_DESAA Length = 452 Score = 181 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 55/289 (19%), Positives = 104/289 (35%), Gaps = 22/289 (7%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + ILIV+DE L + G V A +G +A++ L +PDLM+ DI MP M+ Sbjct: 1 MFPSILIVDDEPSILDSLGGILTDEGFEVVTALNGYEAIKQLSKISPDLMLLDIWMPGMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL+ L+ +R PV++I+ + +A +LG D + KP+ + ++ + L Sbjct: 61 GLETLKQVRKEHPSVPVVMITGHGTIETAVQATKLGAYDFIEKPLS-IEKVVVTINNALN 119 Query: 126 PSMFNSR---VEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISH----------CR 172 + ++ + + P V+ R Sbjct: 120 FRRLEEENLYLRKKALEKHSITGFSPAIMEVRNQINTVAPTDSWVLISGENGTGKEMVAR 179 Query: 173 VNYRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAAL-LLRALFNGLLQEQL 231 + +D P + ++ A++S+ F ++ A R F Q L Sbjct: 180 TIHHLSARSDHPMVTVNCASISKK---FMESELFGHEKGAFPGAKQRKRGRFELANQGTL 236 Query: 232 AHQ---NQRLPELGALLKQV-NHLLRQANLPGQFPLLVGYYHRELKNLI 276 + + +L+ + N ++ + V KNL Sbjct: 237 FFDEVGDMDMETQSRILRVLENQKFQRVGGGRTITVDVRVIASTNKNLE 285 >UniRef50_Q1NPJ0 Response regulator receiver n=1 Tax=delta proteobacterium MLMS-1 RepID=Q1NPJ0_9DELT Length = 461 Score = 181 bits (461), Expect = 3e-44, Method: Composition-based stats. Identities = 55/305 (18%), Positives = 106/305 (34%), Gaps = 49/305 (16%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +IL+V+DE+ R+ L S G AA+G A++LL + D++I D+ M +G Sbjct: 2 ARILVVDDEEDIRTALRIVLSGEGYEVETAANGRVAIDLLEKHSFDMVITDLKMELADGY 61 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 +L+ +R TPV++I+A ++ +A++LG D ++KP ++ V L Sbjct: 62 DVLKKVREFDSLTPVIIITAFGSIDSAVEAMKLGATDYIVKPFLH-EDIKFTVRNILEHG 120 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLV 187 +R K + L + +V ++ Sbjct: 121 SLRLENLALKRQLSQ--------KLDNKKIVGLSEAMNKVFDTIEKA----APTKANIMI 168 Query: 188 LDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQ 247 + + LA + + A+ A+ LL+ +L + Sbjct: 169 TGESGTGKGLLAE-AVHQNSPRRDKPFMAINCAAIPETLLESELFGYKK----------- 216 Query: 248 VNHLLRQANLPGQFPLLVGYYHRELKNLILVSAG---------LNATLNTGEHQVQISNG 298 G F G + + + G + + + +V S Sbjct: 217 -----------GAFT---GANSNKTGLITMADGGTLFLDEIGDMPMVIQSKILKVLESGE 262 Query: 299 -VPLG 302 +PLG Sbjct: 263 VLPLG 267 >UniRef50_A1ZFP4 Two-component hybrid sensor and regulator n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZFP4_9SPHI Length = 1269 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 10/165 (6%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG--FTPDLMICDIAMPRMNG 66 +IL+V+DE V +L++ S A+DG+ AL+++ D+++ D+ MP+M+G Sbjct: 886 KILVVDDEPVNLQVLENHLSIQNYNITQASDGLKALKIIKESKEPFDIILLDVMMPKMSG 945 Query: 67 LKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 ++ IR R + PVL+++A DI + G D L KP + L + + Sbjct: 946 YEVCRTIRERFPLVELPVLMLTAKNQPKDIVEGFDAGANDYLTKPFSKV-ELLSRIKTHV 1004 Query: 125 YPSMFNSRVEEEERLFRDWDA-----MVDNPAAAAKLLQELQPPV 164 + + ++ ++++A + + LL + P Sbjct: 1005 LLKLTSENLQTANEKLQEYNATLEQKIEERTEEINTLLLNILPEE 1049 >UniRef50_B7KDV4 Sensor protein n=1 Tax=Cyanothece sp. PCC 7424 RepID=B7KDV4_CYAP7 Length = 1383 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 10/175 (5%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 +IL+ +D R + S ADG+ ALE + PDL++ D+ MPR+ Sbjct: 627 PANGRILLADDNGDMREYVKRLLSQY-YEVETVADGIAALEAIRRHPPDLVLSDVMMPRL 685 Query: 65 NGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 NG +LL+ +R ++ P++++SA + + L+ G +D L+KP L + A Sbjct: 686 NGFELLQELRRNPLTEELPIILLSARAGEESLVEGLKSGADDYLVKPFS-ARELLARIEA 744 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 L + + ++E+ R AA + + + + +R Sbjct: 745 TLKMAQLRQQAAQKEQKLRA------EAEAARQQITNIFESITDGFVAFDHQWRF 793 >UniRef50_B8DLN3 Two component, sigma54 specific, transcriptional regulator, Fis family n=12 Tax=Deltaproteobacteria RepID=B8DLN3_DESVM Length = 491 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 86/241 (35%), Gaps = 15/241 (6%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + +ILI++DE R L G + A G D L LL TPDL+ DI MP M+ Sbjct: 1 MHARILIIDDEDGIRFSLRGILEDEGFEVLEAPSGEDGLALLARETPDLVFLDIWMPGMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL +L+ + + PV++IS + A+R G D + KP+ L Sbjct: 61 GLAVLDQLHAQRPDLPVIMISGHGTIETAVNAIRKGAHDFIEKPLSLEKVLIAA-----Q 115 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 ++ + E RD + V+ R ++ D Sbjct: 116 RALEYGDLRRENEALRDSLPTAHADEMNGR---------SPVMETLRGQIARVAPTDAWV 166 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 L+ + LA + + L A+ A+ L++ +L + Sbjct: 167 LITGENGTGKE-LAARAIHAGSRRADRPLVAVNCAAIPEELIESELFGHEKGAFTGADSA 225 Query: 246 K 246 K Sbjct: 226 K 226 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 45/191 (23%), Positives = 73/191 (38%), Gaps = 2/191 (1%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +ILI+EDE R+ L G + AADG + L+ + PDL++ D+ MP+++G Sbjct: 2 ARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDGF 61 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 L +R + P+L+++A + D L G +D L+KP + L V A L Sbjct: 62 ALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFS-TDELLARVRAMLRRH 120 Query: 128 MFNSRVEEEERLFR-DWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 R R + D + K L + + + Sbjct: 121 QREKRAVATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGEPISRERFLDV 180 Query: 187 VLDIAALSEND 197 V AA Sbjct: 181 VWGYAAFPTTR 191 >UniRef50_A0YR26 Regulatory components of sensory transduction system n=1 Tax=Lyngbya sp. PCC 8106 RepID=A0YR26_9CYAN Length = 469 Score = 181 bits (460), Expect = 3e-44, Method: Composition-based stats. Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 3/152 (1%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILIV+D +L + G ++A DG L L PDL++ D+ MP ++G + Sbjct: 9 ILIVDDNPTNIKVLSDFLKDFGFKVLIAKDGESCLHKLEKIKPDLILLDVMMPGVDGFET 68 Query: 70 LEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 I+ PV+ ++A + D K LG D + KP++ V L Sbjct: 69 CRRIKALDSTKDIPVIFMTALTDPVDKLKGFTLGAVDYITKPLQH-EEAIARVNVHLKLR 127 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQE 159 ++E++ L + + ++ KL + Sbjct: 128 SLTKQLEQQNHLLEEKNQLLQEEIRYRKLAES 159 >UniRef50_B3PLM0 Putative response regulator n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PLM0_CELJU Length = 581 Score = 181 bits (459), Expect = 4e-44, Method: Composition-based stats. Identities = 67/343 (19%), Positives = 125/343 (36%), Gaps = 21/343 (6%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF-TPDLMICDI 59 M +++LIV+D+++ L + + G +T+ A +A L DL++ D Sbjct: 5 MQDIQHPQRVLIVDDDEILNGLFCEYLGARGLSTLCALSLAEAKNCLRTAVDIDLILLDY 64 Query: 60 AMPRMNGLKLLE--HIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 + GL LL ++ + PV++IS ++ + LG D ++KPV L+ L Sbjct: 65 QLGDGCGLDLLTDPEYQHLFGELPVIMISVRDDHEFLESCFALGAADYIIKPVN-LSLLA 123 Query: 118 EMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLL-QELQPPVQQVISHCRVNYR 176 V A + + ++ + + A AK + L + I + + Sbjct: 124 LKVSALIRNRALQRLIRQQNTELAGFKLNAEREEAVAKYTYEHLVRQNRASIDGVSI--Q 181 Query: 177 QLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQ 236 + G + DL F D T G + + + A+FN ++ + Sbjct: 182 IHPSTTFSGDIALARFSPRGDLYFLLADATGHGLAAAMTIMPVVAIFNTMVARGFHLET- 240 Query: 237 RLPELGALLKQVNHLLRQANLPGQF-PLLVGYYHRELKNLILVSAGLNATL---NTGEHQ 292 ++ ++N L + +F LV HRE + + + G+ A L Sbjct: 241 -------IVAEMNRKLVRDTPVDRFVAALVIQIHRERHEVCVWNGGIPAALWIDQGRVLH 293 Query: 293 VQISNGVPLGTLGNAYLNQ--LSQRCDAWQCQIWGTGGRLRLM 333 SN + LG L + A + T G L Sbjct: 294 EFPSNHMALGILDEPVFDAGVSRCPTPASGEILVFTDGLLEAK 336 >UniRef50_B3E861 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Geobacter lovleyi SZ RepID=B3E861_GEOLS Length = 462 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 62/307 (20%), Positives = 112/307 (36%), Gaps = 45/307 (14%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + K IL+V+DE+ R L G + A +G DAL+L+ PDL++ DI MP M+ Sbjct: 1 MSKLILVVDDEESIRISLGGILEDEGYQVLHAENGADALDLIREEVPDLVLLDIWMPGMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G++ LE IRN V+++S + KA R+G D + KP L+++ + L Sbjct: 61 GIQTLEQIRNLFPDLTVVMMSGHGTIETAVKATRIGAFDFIEKPFS-LDKVLITIANALN 119 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + +E R A+ ++ L+ +Q+ + A P Sbjct: 120 ----FKELRKENEALRLSALKEHEMVGASAGVELLRGQIQR-----------IAPASTPV 164 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALL 245 L+ + + +A + + A+ A+ LL ++L + Sbjct: 165 LIHGEEGVGKELVA-RAIHHYSTRRDKPFVAVNCMAVPEALLADELFGHERG-------- 215 Query: 246 KQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQV-QISNGVPLGTL 304 G ++ L L G H++ + G L L Sbjct: 216 -----------------AYTGANSQKRGRLDLADGGT--VFLDEVHELSLKAQGELLRIL 256 Query: 305 GNAYLNQ 311 + + Sbjct: 257 TDHSFER 263 >UniRef50_B4VMU4 Sensor protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VMU4_9CYAN Length = 483 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 44/163 (26%), Positives = 72/163 (44%), Gaps = 4/163 (2%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M L ILI++D +L +S G +A DG ALE + P L++ D+ Sbjct: 19 MIDKLNKTIILIIDDSPNNLEILSETLTSAGFEIAVALDGETALEQIAYDPPTLVLLDVM 78 Query: 61 MPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP ++G + +++ D + P++ ++A + D K L LG D + KP + + Sbjct: 79 MPGIDGFETCRRLKSNPDTHEIPIIFMTALTDTIDKVKGLNLGAVDYITKPFQ-QEEVLA 137 Query: 119 MVFACLYPSMFNSRVEEEE-RLFRDWDAMVDNPAAAAKLLQEL 160 V L +EE+ RL + + AA L QEL Sbjct: 138 RVKVHLKLRTLTKTLEEQNTRLVEEVEQRGKAEAALQTLTQEL 180 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 180 bits (458), Expect = 5e-44, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 81/204 (39%), Gaps = 8/204 (3%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + K+IL+V+DE L++ G +DG E+L F PDL++ D+ +P+M+ Sbjct: 1 MKKKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G+++ +R + + P+++++A +++ D L G +D + KP L + A Sbjct: 61 GIQVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSP-QELISRIQAIFR 119 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAA---AKLLQELQPPVQQVISHCRVNYRQLVAAD 182 E + + ++ + ++ C+ + L Sbjct: 120 RIQTLPGQAESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLSRQQ 179 Query: 183 KPGLVLDIAALSENDLAFYCLDVT 206 V D L + +DV Sbjct: 180 LLHGVWDYHFLGDTR----IVDVH 199 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 81/197 (41%), Gaps = 9/197 (4%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + K +LIV+DE+ R L+ + + + + A +G +AL++L D+++ D+ MP+M Sbjct: 1 MEKKTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKM 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +G L IR + P+L ++A + D K L+LG +D ++KP L + A + Sbjct: 61 DGFTLCARIREQ-SDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSP-GELIARIEAIM 118 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKL----LQELQPPVQQVISHCRVNYRQLVA 180 + N ++ ++D + + ++ + + + Sbjct: 119 RRAYHNK---QKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVFSR 175 Query: 181 ADKPGLVLDIAALSEND 197 D V Sbjct: 176 EDLLAQVWGYDYTGNAR 192 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 180 bits (458), Expect = 6e-44, Method: Composition-based stats. Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 4/141 (2%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K+ILIVEDE+ R + + A +G + ++ PDL+I D+ MP+ +G Sbjct: 2 KKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDGW 61 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 +L IR + P+++++A D L +G +D L KP L V L Sbjct: 62 ELCGEIRQQ-SNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSP-RELVLRVQIILRR- 118 Query: 128 MFNSRVEEEERLFRDWDAMVD 148 N + + + D Sbjct: 119 -GNQVAIQAKESLSEVIEFPD 138 >UniRef50_B4AUG4 Sensor protein n=1 Tax=Cyanothece sp. PCC 7822 RepID=B4AUG4_9CHRO Length = 1566 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 10/174 (5%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +IL+ +D R + + L +DG+ LE L PDL++ D+ MP ++ Sbjct: 394 SRPRILLADDNADMRDYIKRLLTDL-YEVETVSDGIAVLEALARELPDLVLTDVMMPGLD 452 Query: 66 GLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G +LL +R Q P++++SA + L+ G +D L+KP L V Sbjct: 453 GFELLRELRANPNTRQIPIILLSARAGEPSRVEGLKAGADDYLIKPFS-ARELLARVETH 511 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 L + E+ R A K + + + +R Sbjct: 512 LKMAQIREENAHREQQLRI------EAEEARKEVINILETITDGFFSLDHQWRF 559 Score = 107 bits (267), Expect = 7e-22, Method: Composition-based stats. Identities = 37/118 (31%), Positives = 63/118 (53%), Gaps = 5/118 (4%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 L G IL+V+D+ R L GA V A +AL++L G PD+++CDI MP + Sbjct: 1442 LSGMDILVVDDDADTRDFLGFLLREAGAKVVTLASATEALQVLAGSKPDVLLCDIGMPEI 1501 Query: 65 NGLKLLEHIR---NRGDQTPV--LVISATENMADIAKALRLGVEDVLLKPVKDLNRLR 117 +G L++ +R N+ + P+ + ++A + KAL+ G + + KP+K L+ Sbjct: 1502 DGYMLIKQVRIWENQSGEKPILAIALTAYAGDLNHEKALKAGFQHHISKPIKPEELLK 1559 >UniRef50_C0QLH6 Sensor protein n=2 Tax=Deltaproteobacteria RepID=C0QLH6_DESAH Length = 418 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 53/186 (28%), Positives = 90/186 (48%), Gaps = 13/186 (6%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 G +IL ++DE R + S+ G + A DG + L+L PDL++CD+ MP M+ Sbjct: 5 TGIKILTIDDEPYIRESIKSFLEDFGFDVIAAEDGRNGLKLFESQRPDLVLCDLRMPEMD 64 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 GL++LE + +TP++V+S N+ D +ALRLG D ++KP++D+N L V L Sbjct: 65 GLEVLEAVTKTSPETPIIVVSGAGNILDTVEALRLGAWDYIIKPIQDMNVLFHAVGKGLE 124 Query: 126 PSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + RL R+ + + A L+ +++ + + G Sbjct: 125 RA----------RLIREKNQYQQDLEKANARLKTSLDTLERTRDQLVQSEKMAA---LGG 171 Query: 186 LVLDIA 191 LV +A Sbjct: 172 LVAGVA 177 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 180 bits (457), Expect = 6e-44, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 2/126 (1%) Query: 3 QPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMP 62 P +IL+V+DE R LL S T A++G +AL+L+ L++ D+ MP Sbjct: 1 MPEQSFKILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMP 60 Query: 63 RMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFA 122 M+GL IR P+++++A + D L++G +D + KP L + A Sbjct: 61 EMDGLTACMRIRE-FSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSP-RELLARIEA 118 Query: 123 CLYPSM 128 L S Sbjct: 119 TLRRSH 124 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 180 bits (457), Expect = 7e-44, Method: Composition-based stats. Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 4/136 (2%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M++ + +IL+ +DE+ R LL S G TV A++G++A+E L T L++ D+ Sbjct: 1 MSESMF--RILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVM 58 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP ++GL IR P+++++A D L++G +D + KP L + Sbjct: 59 MPELDGLTACMRIRE-FSNVPIILLTARSEELDRIHGLKIGADDYITKPFSP-RELLARI 116 Query: 121 FACLYPSMFNSRVEEE 136 A L + S+ +E Sbjct: 117 EATLRRTHSFSKEQEA 132 >UniRef50_A4J443 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Peptococcaceae RepID=A4J443_DESRM Length = 455 Score = 180 bits (457), Expect = 8e-44, Method: Composition-based stats. Identities = 54/294 (18%), Positives = 106/294 (36%), Gaps = 26/294 (8%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 +V K++L+V+DE+ R L + AA+G+ + L F PD++I DI MP Sbjct: 1 MVKKRVLVVDDEESVRQFLYDVLTEEKYQVATAANGLQCQDKLMQFKPDVLITDIRMPEK 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +G LLE I++ G PV++++A KA++LG D ++KP L + A Sbjct: 61 DGFGLLEQIKSAGLNIPVILMTAFGTTEVAIKAMKLGAFDYIVKPFDLDEFLDLIQRAVA 120 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 + + +E ++ N + + +++ + ++ Sbjct: 121 QSDTVATFPQAQEPASSTGINIIGNSPSMRNVYKDIGR---------------VADSNAT 165 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGAL 244 L+ + + +A + + N + L + LL+ +L + + Sbjct: 166 VLIQGESGTGKELVA-RAIHYNSSRRNNPFIKVNCANLPDSLLESELFGYEKGAFTGASS 224 Query: 245 LKQVNHLLRQANLPGQFPLLVGYYHRELKNLILV-SAGLNATLNTGEHQVQISN 297 LK L + + L A L + E Sbjct: 225 LKVGRFELAHEG-----TIFFDEI----GEISLATQAKLLRAIQEKEFDRVGGT 269 >UniRef50_B3EAH2 Two component, sigma54 specific, transcriptional regulator, Fis family n=7 Tax=Desulfuromonadales RepID=B3EAH2_GEOLS Length = 472 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 89/230 (38%), Gaps = 20/230 (8%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K++L+++DE R + S A+G ALE + DL++ D+ MP ++G+ Sbjct: 5 KKLLVIDDEPAIREGVRRILESESFQVETFANGHAALERIKQEPFDLVVTDLKMPGISGM 64 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 ++L+ I+ PV+ I+ ++ + ++LG D + KP + + L Sbjct: 65 EVLKAIKEIQPDLPVIFITGYSSVDSAVEVMKLGAVDYIAKPFTP-EEMLSTIRLALEQR 123 Query: 128 ---MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 + + + +E R +D V K+ + + Q+ D Sbjct: 124 VVDLGDLYLLKELRDGEGFDRFVGKSHEMVKVYRRIM---------------QVAPTDST 168 Query: 185 GLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQ 234 L+ + + +A + + A+ +L LL+ +L Sbjct: 169 VLITGESGTGKELVA-RAIHKHSQRRDHPFVAVDCTSLVENLLESELFGH 217 >UniRef50_Q1PYK0 Strongly similar to sigma 54 response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYK0_9BACT Length = 456 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 45/295 (15%), Positives = 101/295 (34%), Gaps = 26/295 (8%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + ++I++V+D+ + R L G +G A+ +G D++ D+ MP M Sbjct: 1 MSVEKIMVVDDDALGREYLCETLKRGGYDVTGVGNGQQAVSRIGKEDFDMIFMDMKMPGM 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKD--LNRLREMVFA 122 +G++ LE ++ +T V++++A + +A+R G D ++KP + L V Sbjct: 61 DGMEALEKVKGISSETVVILMTAYGTIESAVEAMRKGAYDYIIKPFSPDQIELLISRVN- 119 Query: 123 CLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAAD 182 ++ E + +R + + +S +++ + Sbjct: 120 ------ERQKLIAENKYWRSASNVDEKSEPVY--------SKNSKMSQIYEQLKKIAQSK 165 Query: 183 KPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELG 242 L+ + + +A + + AL LL+ +L + G Sbjct: 166 ASVLIQGESGTGKELVA-RAIHYFSPRCEKPFIRVNCAALAESLLESELFGHERGAYT-G 223 Query: 243 ALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLNTGEHQVQISN 297 A+ K++ + + A L L E + Sbjct: 224 AVAKRIGRFELANEGT-------LLLDEVSEISPNIQAKLLRVLEEEEFERVGGE 271 >UniRef50_Q3ME76 Sensor protein n=1 Tax=Anabaena variabilis ATCC 29413 RepID=Q3ME76_ANAVT Length = 1431 Score = 179 bits (456), Expect = 8e-44, Method: Composition-based stats. Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 10/174 (5%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 +IL+V+D R + S A DG+ ALE L PDL++ D+ MPR++ Sbjct: 605 SSARILLVDDNADMREYVKRLLSRH-YVVETATDGLAALEALADHLPDLVLTDVMMPRLD 663 Query: 66 GLKLLEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFAC 123 G LL +R+ R + P++++SA + L G +D L+KP L V A Sbjct: 664 GFGLLSALRSNNRTREIPIILLSARAGEEAKVEGLEAGADDYLIKPFS-ARELLARVEAT 722 Query: 124 LYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQ 177 L + E+++ R A + ++ + + ++R Sbjct: 723 LKLAQLRRDAMEQQQTLR------QEAETAKQNVETILSSINDGFYVLDRDWRF 770 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 4/119 (3%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 G Q+L+V+D+ R + GA + A ++AL++ PD+++ DI MP M+G Sbjct: 1307 GIQVLVVDDDTDTREFVAFLLEQAGARVITAVSALEALQVFTQSPPDILLSDIGMPDMDG 1366 Query: 67 LKLLEHIRNRGDQ----TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVF 121 L+ IR P + ++A D +AL++G + + KPV N +R +V Sbjct: 1367 YMLMRQIRALPPDQGGKIPAIALTAYAGEIDEKRALKVGFQRHISKPVDPDNLIRAIVN 1425 >UniRef50_A4J616 Two component, sigma54 specific, transcriptional regulator, Fis family n=10 Tax=Bacteria RepID=A4J616_DESRM Length = 454 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 53/261 (20%), Positives = 103/261 (39%), Gaps = 23/261 (8%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+++DE+ L+ G + G L+++ TP L+I D+ MP M+GL+ Sbjct: 6 KILVIDDEEHMCWALEKGLMQEGYQVFTSTRGKHGLDIIRKETPSLVILDLKMPEMDGLE 65 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 +L ++ + P+++I+A + +A++LG D + KP DL+ L+ ++ L + Sbjct: 66 VLVKAKDLMPKLPIIMITAHGTIDTAIEAMKLGATDYITKPF-DLDELKMVIRQALMVNH 124 Query: 129 FNSRVE-EEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLV 187 V L + + +V N A I ++ ++ LV Sbjct: 125 LQEEVTFLRSELNKKYGQIVGNSQA---------------IHDVCGLIEKVADSNATVLV 169 Query: 188 LDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQ 247 + + A ++ + + AL LL+ +L + GA Sbjct: 170 TGESGTGKEITALSIHQLSSRR-DKPFVPINCAALPESLLESELFGHEK-----GAFTGA 223 Query: 248 VNHLLRQANLPGQFPLLVGYY 268 V L + L Q L + Sbjct: 224 VARKLGRFELANQGTLFLDEI 244 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 75/142 (52%), Gaps = 2/142 (1%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 ++L+V+D++ +L ++ G + + A DG +A++ PD+++ D+ +P ++G Sbjct: 1 MKVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGW 60 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 + + IR R P+++++A ++ AD L LG +D ++KP L + A Sbjct: 61 GVCKEIR-RTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVL-ARMRAIFRRL 118 Query: 128 MFNSRVEEEERLFRDWDAMVDN 149 SR + ER+ + DA++D Sbjct: 119 QPASRRDGGERILKVGDAVLDQ 140 >UniRef50_A7BQZ3 Sensory box/GGDEF family protein n=1 Tax=Beggiatoa sp. PS RepID=A7BQZ3_9GAMM Length = 576 Score = 179 bits (456), Expect = 9e-44, Method: Composition-based stats. Identities = 52/280 (18%), Positives = 113/280 (40%), Gaps = 25/280 (8%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 MT+ ILIV+DE V R ++ S+ G V A +G +AL+ PDLM+ D+ Sbjct: 1 MTE---KSTILIVDDETVSRYTVEVLLSAEGYNLVFAENGEEALKKAAESIPDLMLLDVM 57 Query: 61 MPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP M+G ++ + +R + P+++++A ++ + + G +D + KP D LR Sbjct: 58 MPGMDGFEVCQRLRTNPRLAELPIVMVTALDDRDSRLRGIEAGADDFMSKPF-DRAELRA 116 Query: 119 MVFACLYPSMFNSRVEEEERL--FRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYR 176 V + + +E EE+L ++D + P L ++Q + ++ Sbjct: 117 RVRTITRLNRYRRLIETEEQLAYLANYDPLTKLPNR-----NLLLERLRQTLGRATRTHQ 171 Query: 177 QLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLR--ALFNGLLQEQLA-- 232 + A + + +++ + D L + + A L ++ Sbjct: 172 DI--AILALDLDNFQMINDG-VGHDVGDKVLHEVAQRLTQTVSKIGATVARLSGDEFVVI 228 Query: 233 -HQNQRLPELGALLKQVNHLLRQANLPGQ----FPLLVGY 267 + + ++ + + + L ++ + +G Sbjct: 229 EESDNLVKDVSEMAQGLLDNLSRSMVIDHHEMVVTASIGI 268 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 68/130 (52%), Gaps = 2/130 (1%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + +IL+V+DE+ R +L ++ + +A+DG +AL + F PDL+I D+ +P ++ Sbjct: 1 MNPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEIS 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G ++ + IR QTP+L+++A D G +D L+KP L L + A L Sbjct: 61 GEEVCQKIRQ-DKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFS-LRELLARIKAILR 118 Query: 126 PSMFNSRVEE 135 S + E Sbjct: 119 RSNQKAEKAE 128 >UniRef50_Q3A2M3 Two component, sigma54 specific, transcriptional regulator, Fis family n=16 Tax=Bacteria RepID=Q3A2M3_PELCD Length = 492 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 90/234 (38%), Gaps = 14/234 (5%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 +IL+V+DE+ R L G +DG A+ L DL+I DI MPR++G Sbjct: 27 QHRILVVDDEESMREFLCILLKRDGYLVDAVSDGQQAVACLKEQNYDLIISDIKMPRLDG 86 Query: 67 LKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 LL+H++ R T +++I+A A++ G D + KP K+ +R +V L Sbjct: 87 FGLLDHVKERFASTAMIMITAFSTAEQAVDAMKKGAYDYITKPFKN-EEIRLVVENALER 145 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGL 186 + ++ + + +V+ ++ A+ L Sbjct: 146 MDLRRENLQLKKELGQRFSFANII------------GKSKVMQGVYDLIEKVSASKVNVL 193 Query: 187 VLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 + + + +A + H+ A+ A+ LL+ +L + Sbjct: 194 ITGESGTGKELVA-RAIHYNSDRHDRPFVAIYCGAIPENLLESELFGHEKGAFT 246 >UniRef50_A5GBB3 Two component, sigma-54 specific, transcriptional regulator, Fis family n=6 Tax=Desulfuromonadales RepID=A5GBB3_GEOUR Length = 500 Score = 179 bits (455), Expect = 1e-43, Method: Composition-based stats. Identities = 55/243 (22%), Positives = 101/243 (41%), Gaps = 20/243 (8%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + +ILIV+DE++ L S G AA G +A+ L F PD+ + DI +P Sbjct: 1 MEHNRILIVDDEKLISWSLSVMLSKAGYAVETAASGSEAINKLSLFKPDMALLDIRLPDA 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +GL LL+ + R ++ V++I+A ++ +AL+LG ED + KP + LR ++ Sbjct: 61 DGLDLLQQFKLRDEELSVIMITANADVDSAVRALKLGAEDYIGKPFN-MEALRHVIDKAF 119 Query: 125 YPSMFNSRV---EEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 ++ +E R + D +V N A+ L + ++ Sbjct: 120 EKRQLREKLDFFRKELRKKTEHDKLVGNSASMVNLFKMIK--------------VCADTD 165 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQ-LAHQNQRLPE 240 K L+L + + +A + A A + A+ LL+ + H+ + Sbjct: 166 AKTVLILGESGTGKELVA-RAIHNHSARAEAPFAEVNCAAIPETLLESELFGHEKGAYTD 224 Query: 241 LGA 243 Sbjct: 225 ASK 227 >UniRef50_Q3A356 Two component, sigma54 specific, transcriptional regulator, Fis family n=11 Tax=Desulfuromonadales RepID=Q3A356_PELCD Length = 471 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 40/229 (17%), Positives = 95/229 (41%), Gaps = 20/229 (8%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 QIL++EDE R + + G A G ALE+L ++++ D+ +P ++G++ Sbjct: 17 QILVIEDEAANREAIALLLGNAGYQVTTAETGEKALEILSKTPFEVILTDLFLPGVSGIE 76 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 +L+ ++ + T V++I+ + +A++ G D + KP+ +L+ ++ + S Sbjct: 77 ILKRVKEQWPFTNVILITGKGSAESAVEAMKEGAFDYITKPLH-FEKLQVIIAKAVEKSR 135 Query: 129 FNSR---VEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG 185 + + ++ R +D ++ N + + +++ D Sbjct: 136 LVAENLYLRQQLRGKYRFDNIIGNSLPMQYVFSRM---------------EKVLNTDSTI 180 Query: 186 LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQ 234 L+L + + +A + A+ A+ LL+ +L Sbjct: 181 LILGESGTGKELVA-KAIHYNGHRREKPFVAINCGAIPAELLESELFGH 228 >UniRef50_Q1Q5K2 Similar to two component response regulator n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q5K2_9BACT Length = 271 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 51/231 (22%), Positives = 105/231 (45%), Gaps = 18/231 (7%) Query: 7 GKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNG 66 +ILIVED++ R++L+ + LG ++LA +G+ AL + PD+++ DI MP M+G Sbjct: 4 QARILIVEDKESNRNILNERINELGHISILAENGLSALAKVREQPPDIILLDIMMPEMDG 63 Query: 67 LKLLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 ++L H++ PV++ISA +M I + + G +D L KP + L+ + +CL Sbjct: 64 YEVLCHLKGNASWRHIPVIMISAIGDMDSIVRCIEKGADDYLTKPFNPV-LLKARIDSCL 122 Query: 125 YPSMFNSRVEEEERLFRDWDA-MVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADK 183 + + E+ + D++ + AA++ + + N+ ++A Sbjct: 123 MKKRLHDQEEQYRKRLEDYNLDLERRVKKAARVGTQYLRNYVSDLPR---NWAGILAIIL 179 Query: 184 PGLVLDIAA--------LSENDLAFYCLDVTRAGHNGVLAALLLRALFNGL 226 + + LSE+ + Y + +++ + L + Sbjct: 180 GVVYILSFFSYFIIGLLLSEDYILEYLHKLH---KAAIVSYIPLAFIVESY 227 >UniRef50_D2L4Q3 Two component, sigma54 specific, transcriptional regulator, Fis family n=3 Tax=Desulfovibrio RepID=D2L4Q3_9DELT Length = 453 Score = 179 bits (454), Expect = 2e-43, Method: Composition-based stats. Identities = 56/233 (24%), Positives = 93/233 (39%), Gaps = 20/233 (8%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 + K IL V+D+ +L+ S G V A DG +ALE+L L+I DI M Sbjct: 3 SAAQTRKTILAVDDDPHILEVLEVRLVSAGYDVVTAGDGAEALEVLAKRPVKLVISDIRM 62 Query: 62 PRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVF 121 P M+G++LLE + RG + P++ ++A ++ +A++ G D L KP D L V Sbjct: 63 PGMDGMRLLEEMERRGIRLPIIFLTAHGSIPGAVEAIKHGAVDYLTKPF-DGQELLTRVT 121 Query: 122 ACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAA 181 + N E + + A +++ + P Sbjct: 122 EVFARAAGNDATRERDLGESGLVGQSEAMRDLAAMIERVAPR------------------ 163 Query: 182 DKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQ 234 D LVL + + +A + NG L + + GLL+ +L Sbjct: 164 DVNVLVLGESGTGKELVA-NLIHRRSPRKNGPLVTVDCGSTPAGLLESELFGH 215 >UniRef50_B1ZR73 Two component, sigma54 specific, transcriptional regulator, Fis family n=2 Tax=Verrucomicrobia RepID=B1ZR73_OPITP Length = 452 Score = 178 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 101/250 (40%), Gaps = 18/250 (7%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M++P +IL+V+DE+ + + G A DG AL LL +L++ DI Sbjct: 1 MSEP--KARILVVDDERALCAGIQEALQREGHQVDAANDGASALRLLTQKAYNLVVTDIR 58 Query: 61 MPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 MP ++G++LL+ R RG T ++++A + +A+R G D L KPV DL RLR +V Sbjct: 59 MPELDGMQLLKAARARGRDTQFILMTAFGRVETAVEAMRAGAYDYLTKPV-DLKRLRAVV 117 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 L + E + + + L + + ++ Sbjct: 118 AKALELQTVVAENSELRQRLQ-------------RAEPGLLLGESEPMRKVVAMAEEVAQ 164 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 +D L+ + + +A + A + AL L++ +L + Sbjct: 165 SDVTVLIEGESGTGKELVA-RLIHTRSARAKKPFIFVNCAALTESLVEAELFGHAKGSFT 223 Query: 241 LGALLKQVNH 250 GA+ ++ Sbjct: 224 -GAVADKLGR 232 >UniRef50_C6BT74 Signal transduction histidine kinase n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BT74_DESAD Length = 372 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 66/342 (19%), Positives = 134/342 (39%), Gaps = 47/342 (13%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL ++D++ R + + G + A++G + L++ PD+++ D+ MP M+GL Sbjct: 6 KILTIDDDESVRLSIAHYLEDSGYEVLQASNGHEGLKIFHEQKPDVVLLDLRMPEMDGLS 65 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 +L+ + QTPV+V+S T + D+ +RLG D + KP+ DL L A L Sbjct: 66 VLKQLGQEAPQTPVIVVSGTGSFEDVIATVRLGSWDYIPKPITDLTDLE---NAILRTRE 122 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLVL 188 + E ER + + + +L+ ++ R Sbjct: 123 RARLLVENERYKEELECKIRERTEELQLMNKVLSEEITARKKSEGLVR------------ 170 Query: 189 DIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQV 248 A+L+E ++ + + + LL Q + + + E LL++ Sbjct: 171 --ASLAEKEVMLKEIH---HRVK------NNLQVISSLLSLQSGYTDDK--EASNLLREC 217 Query: 249 NHLLRQANLPG---QFPLLVGYYHRELKNLILVS---------AGLNATLNTGEHQVQIS 296 H +R ++ + L L++ +N T N + + I Sbjct: 218 QHRVRSMSMLHEKLYRSEDLSRIDMNEYALTLINFLLRSYSVDGKVNPTYNINDIHMGID 277 Query: 297 NGVPLGTLGNAYL-NQLSQRCDAWQCQIWGTGGRLRLMLSAE 337 + +P G + N + N L+ + +GG L++ + + Sbjct: 278 SAIPCGLIINELVSNALTHAYE------MNSGGELKVSMHRD 313 >UniRef50_UPI0001C38DA3 response regulator receiver modulated diguanylate cyclase n=1 Tax=Arthrospira platensis str. Paraca RepID=UPI0001C38DA3 Length = 487 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 3/151 (1%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 IL+V+D LL + G LA G AL L F PDL++ DI MP M+G + Sbjct: 18 TILVVDDVPDNLRLLQNILRKQGYDVRLATSGKLALRSLTRFRPDLILLDIMMPEMDGYQ 77 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + E+I+ PV+ ++A D KA ++G D L KP + + + L Sbjct: 78 VCEYIKKNPETQDIPVIFLTALNQGIDKLKAFQVGGADYLTKPFQ-IEEALARIQNQLTL 136 Query: 127 SMFNSRVEEEERLFRDWDAMVDNPAAAAKLL 157 ++E + + + + + +LL Sbjct: 137 RSLQKQLEAKNQALIEQNQQLKESERETRLL 167 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 38/200 (19%), Positives = 86/200 (43%), Gaps = 8/200 (4%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + K+IL+VED++ ++ + G DG+ A E DL++ D+ +P + Sbjct: 1 MKDKKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGL 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +G ++ + IR TP+++++A ++ + K L +G +D + KP + ++ L + A L Sbjct: 61 DGYQVCQKIRET-SYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFE-IHELLARIHAML 118 Query: 125 YPSMFNSRVEEEERLFR-DWDAMVDNPAAAAKLLQE---LQPPVQQVISHCRVNY--RQL 178 + + R ++D ++ + A L E P + + + Y + Sbjct: 119 RRIEQDHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVF 178 Query: 179 VAADKPGLVLDIAALSENDL 198 + + E+ + Sbjct: 179 KREELIEGIWGWDFEGEDRV 198 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 178 bits (452), Expect = 3e-43, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 80/195 (41%), Gaps = 3/195 (1%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + IL+V+DE R++ ++ G + A G + L++ PDL++ D+ +P M+ Sbjct: 1 MQPTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G+++ +R + +L+++A + D LR+G +D L KP L V A L Sbjct: 61 GMEITARLREK-SDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSP-RELVARVEAILR 118 Query: 126 PSMFNSRVEEEERLFR-DWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKP 184 R + D AA +LL+ +I+ R + R L D Sbjct: 119 RRRGKPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLSREDLI 178 Query: 185 GLVLDIAALSENDLA 199 V + + Sbjct: 179 EKVWGADFYGTDRVV 193 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 59/121 (48%), Gaps = 2/121 (1%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMN 65 + ++IL V+D+ +L G + A+ G +AL+ +PDL+I D+ MP M+ Sbjct: 1 MPQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMD 60 Query: 66 GLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 G + + ++ + + P++++SA D R+GV+D KP L V A L Sbjct: 61 GFETYQKLKAQ-REVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSP-TELALRVKAVLR 118 Query: 126 P 126 Sbjct: 119 R 119 >UniRef50_D0LRM4 Sensor protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRM4_HALO1 Length = 397 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 77/195 (39%), Gaps = 9/195 (4%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+V+D ++L G ++A DG +A+EL PD+++ D+ MP ++G + Sbjct: 22 VLLVDDNPANLAVLFEHLDEHGYRVLVAEDGSEAVELASRIQPDIILLDVMMPGIDGFET 81 Query: 70 LEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 +++ P++ ++A + D + R G D + KP + L V + Sbjct: 82 CRQLKSHSTLSDIPIIFMTALTDTRDKVEGFRAGAVDYVTKPFQHREVL-ARVRTHVVLR 140 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPG-- 185 ++ + +++R+ AA K + + + G Sbjct: 141 RLDAELRDQKRVLEAEVQERLAAEAALKQHVAMLEAQNAELDAFARTVAHNLKDPLNGVL 200 Query: 186 ----LVLDIAALSEN 196 LV++ L E+ Sbjct: 201 GFADLVVNEFTLEED 215 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 88/203 (43%), Gaps = 18/203 (8%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + ILIVEDE+ +L G + + +G + L+ L++ D+ +P + Sbjct: 1 MEKGHILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGL 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +GL++L +R QTPV++++A +++ D L +G D + KP + + L + A L Sbjct: 61 SGLEVLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFE-IEELLARIRAAL 119 Query: 125 YPSMFNS------------RVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCR 172 + + RV E+ R R D V+ LL + QQV++ Sbjct: 120 RQNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVLTR-- 177 Query: 173 VNYRQLVAADKPGLVLDIAALSE 195 Q++++ + + + Sbjct: 178 ---EQILSSVWGFDYIGDTNVVD 197 >UniRef50_A0LKN3 Response regulator receiver protein n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LKN3_SYNFM Length = 227 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 7/157 (4%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 ILIV+D +L + G + A G AL+++ DL++ D+ MP M+G ++ Sbjct: 11 ILIVDDISKNIQVLGNILRRDGYSLSFATSGTQALDMVFADDYDLILLDVMMPEMDGFEV 70 Query: 70 LEHIRN--RGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 IR G P++ ++A + DI K + G D + KP L V A L Sbjct: 71 CRKIRELPDGQAIPIIFLTAKTDEEDIVKGFQAGGTDYVTKPFNS-EELLARVHAHLELK 129 Query: 128 MFNSRV----EEEERLFRDWDAMVDNPAAAAKLLQEL 160 + +E D + + A + ++ L Sbjct: 130 RARDEIQLAYQELAERTNDLIVLNEELQNALREIKTL 166 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 44/128 (34%), Positives = 61/128 (47%), Gaps = 1/128 (0%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +ILIV+DE R L+ G A DG AL LL G DL+I D+ MP M+G+ Sbjct: 73 AKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDGM 132 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 L +R R TPV++++A D L G +D ++KP L V A L + Sbjct: 133 TCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSP-RELVARVKAVLNRT 191 Query: 128 MFNSRVEE 135 M S + Sbjct: 192 MPRSEASD 199 >UniRef50_A9AYA4 Two component, sigma54 specific, transcriptional regulator, Fis family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYA4_HERA2 Length = 457 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 64/249 (25%), Positives = 109/249 (43%), Gaps = 20/249 (8%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL-GGFTPDLMICDI 59 MT+ + ILI +D+ R LL F G T A G + L + DL+I D+ Sbjct: 1 MTKATEQRHILIADDDPGIRGLLCEVFDEEGYLTEPAEHGGEVLAKMTKKHPYDLLIMDV 60 Query: 60 AMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 MP +GL +LE +R G TPV++++A + +A+++G D ++KP D+ + + Sbjct: 61 RMPGQDGLTILEQLRKNGITTPVIMMTAHGTSSTAIRAIQIGAYDYVIKPF-DVEEVTLV 119 Query: 120 VFACLYPSMFNSRVEE-EERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQL 178 V S+V E E + F D M+ N A ++ +++ RV + Sbjct: 120 VKRLFDHQQLASKVRELEAKSFDPRDKMIGNSPAMQEIYKQI----------GRVAH--- 166 Query: 179 VAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRL 238 D L+ + LA + V A NG + + AL LL+ +L + Sbjct: 167 --TDATVLITGETGTGKEVLA-NLIHVNSARRNGPMVKVNCAALPESLLESELFGHEKGA 223 Query: 239 PELGALLKQ 247 GA+ ++ Sbjct: 224 FT-GAVAQR 231 >UniRef50_Q3SKC8 Two Component Transcriptional Regulator, Fis family n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SKC8_THIDA Length = 454 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 86/227 (37%), Gaps = 20/227 (8%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +IL+V+D++ R L G T A G +AL LG DL+I D+ M M+G+ Sbjct: 1 MRILLVDDQKSLRRSLSLMLQGAGFETGEAESGEEALSCLGAERFDLVITDLRMEGMSGV 60 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 LL I+ PV++I+A ++ A+RLG D L KP ++ + L + A Sbjct: 61 DLLREIKRLNPLLPVILITAYGSIDSAVDAMRLGAFDYLTKPFREQDILE-KIRASQSAP 119 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLV 187 + E R D A A + ++ D L+ Sbjct: 120 PGFALAAEASRDAEDIVADTPQMRATL------------------IKAERIARTDISVLI 161 Query: 188 LDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQ 234 + +A + + A ++ +L LL+ +L Sbjct: 162 TGETGTGKTRVARF-IHENSARREAPFVSINCASLPENLLESELFGH 207 >UniRef50_C0QZI2 SpoIIE, Stage II sporulation protein E (SpoIIE) n=1 Tax=Brachyspira hyodysenteriae WA1 RepID=C0QZI2_BRAHW Length = 383 Score = 178 bits (451), Expect = 4e-43, Method: Composition-based stats. Identities = 58/341 (17%), Positives = 122/341 (35%), Gaps = 24/341 (7%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M ++ ++ILIV+ + L ++ G + +A +A+ + PD ++ D Sbjct: 1 MKNNILTEKILIVDSNIDYAKFLQNFLKESGYLSYIALSYEEAINMSYDKIPDCILVDYM 60 Query: 61 MPRMNGLKLLE---HIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNR 115 +P HI+N +L ++AT + ++ KA G + LK + D + Sbjct: 61 LPN---AGACRLSQHIKNDNILKNITILFLTATNSKSEFLKAYECGADGFFLKSL-DTDI 116 Query: 116 LREMVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNY 175 L V + + +V E + + + A+KL + + I ++ Sbjct: 117 LLSKVKSYIRLK----KVIESN--IMYMNMLKQDIEYASKLQKSILSYGNTSIPKNDISI 170 Query: 176 RQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQN 235 + G I ++++ A DV+ G + +L+++ F+ + N Sbjct: 171 FHYAPNEVSGDYSGIKSINDGWYAILLADVSGHGVAASMLTILIKSFFDSHI-----VTN 225 Query: 236 QRLPELGALLKQVNHLLRQANLPG--QFPLLVGYYHRELKNLILVSAGLNATL--NTGEH 291 +K++N + N + Y+ E LI SAG L + E Sbjct: 226 SHNTSPANFIKELNQFFIEENFDKNLFASVFYATYNNETGELICSSAGSPRPLFKSKDEI 285 Query: 292 QVQISNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLRL 332 + G +G + + + + T G + Sbjct: 286 EEIDIGGPLIGMTEDIEYTETKIQLNHNDILFIFTDGAYEI 326 >UniRef50_Q31DK6 Response regulator receiver modulated metal dependent phosphohydrolase n=2 Tax=Proteobacteria RepID=Q31DK6_THICR Length = 348 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 55/300 (18%), Positives = 97/300 (32%), Gaps = 34/300 (11%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 ILIV+D + S G A DG +AL L DL++ DI MPRM+G + Sbjct: 6 HILIVDDISENIQVAMSLLREEGYQFSFATDGEEALRLADENDFDLILLDIMMPRMDGYE 65 Query: 69 LLEHIR--NRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 ++ R P++ ++A ++ I+K +LG D + KP L V L Sbjct: 66 TCRRLKANARTQDIPIIFLTAKVDIDAISKGFKLGAVDYITKPFHG-EELIARVKTHLEL 124 Query: 127 SMFNSRVEEEE---------RLFRDWDAMVDNPAAAAKLLQELQPPVQQVIS---HCRVN 174 +++ R R + +N +L EL Sbjct: 125 YASKQLLKQNNLTLQENLVHREKRYTTELEENQKEMIFVLTELMEATSDETGQHIRRVAE 184 Query: 175 YRQLVAADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQ 234 Y +L+A PGL +D +++ Y + L + L E+ Sbjct: 185 YSKLLAHYHPGLSID------DEIIIYHA-APMHDIGKITIPLDILHKPGKLTDEEFNII 237 Query: 235 NQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSA-GLNATLNTGEHQV 293 +L+ ++ + + G + L + + Sbjct: 238 KTHTTSAYEMLRFSKRKFIKS---------AAIISLQHH--EKWNGTGYPSGLKGQDIHI 286 >UniRef50_B5JH27 Sensor protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JH27_9BACT Length = 482 Score = 177 bits (450), Expect = 5e-43, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 3/132 (2%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 IL+V+D R +++ + +LA GV ALELL TPD+++ D+ MP M+G + Sbjct: 8 TILVVDDNLGARRSIEALLTQESYRFLLADSGVVALELLEEHTPDVILLDVMMPGMSGFE 67 Query: 69 LLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYP 126 + IR + P+++I+A ++ + + + G +D L KP+ + LR + + L Sbjct: 68 TCQKIRANSRVSEIPIIMITALDDEESMIQGIDAGADDFLSKPISKI-ELRSRIRSILRL 126 Query: 127 SMFNSRVEEEER 138 + F +E ++ Sbjct: 127 NRFRKLCDERQK 138 >UniRef50_C8QXF1 Response regulator receiver modulated metal dependent phosphohydrolase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QXF1_9DELT Length = 530 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 69/307 (22%), Positives = 114/307 (37%), Gaps = 33/307 (10%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 IL+V+D R +L LG + A +G AL +L DL++ DI MP ++G ++ Sbjct: 171 ILVVDDITANREVLSRRLRRLGYLVMEAENGRQALAMLETGAFDLVLLDILMPELDGYEV 230 Query: 70 LEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 L I+ PVL+ISA ++ + + L G +D L KP + LR V A L Sbjct: 231 LRRIKANELIRHVPVLMISAVGDINSVVRCLEAGADDYLAKPFNSV-LLRARVNASLVKK 289 Query: 128 MF-------NSRVEEEERLF----RDWDAMVDNPAAAA-----KLLQELQPPVQQVISHC 171 +E+ +L R + AA KL + P + + Sbjct: 290 RLYDQELHYKQEIEQHNQLLEQRVRQQVQEISRAQLAAIFSLSKLAESRDPETGEHLERF 349 Query: 172 RVNYRQLVAADKPG----LVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLL 227 R R L + ++D + + A D+ G G+ A+LL+ L Sbjct: 350 REYSRVLARHLQTMPRFCKLIDESFIDNLYAACPLHDI---GKVGIPDAILLK--PGRLT 404 Query: 228 QEQLAHQNQRLPELGALLKQVNHLLRQANLPGQFPLLVGYYHRELKNLILVSAGLNATLN 287 E+ A + L V+ ++L + G E + +G L Sbjct: 405 AEEFAIMQEHATIGAETLLAVDRQYPGSDL-----IRFGIEIAEGHHERWDGSGYPRGLA 459 Query: 288 TGEHQVQ 294 E + Sbjct: 460 GEEIPLV 466 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 59/137 (43%), Gaps = 3/137 (2%) Query: 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGG-FTPDLMICDIAMPRM 64 + ILIV+D LL+ + G + A G DAL LL P+L++ DI MP M Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +G +L IR P+L +SA D +G +D + KP D L + A L Sbjct: 61 SGYELCSQIRREW-DLPILFLSAKGKAVDKVVGFEIGADDYITKPF-DTEELLARIRAHL 118 Query: 125 YPSMFNSRVEEEERLFR 141 + EE+ Sbjct: 119 RRYERIRKHTEEQPEKE 135 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 61/121 (50%), Gaps = 2/121 (1%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 K+IL+VED++ + L + G +A DGV+AL F PDL++ DI +P +G Sbjct: 2 KKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDGW 61 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 ++ + IR P+++++A + D L++G +D + KP L + A L Sbjct: 62 EVCKEIRKI-SNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFG-AKELLARIEAVLRRY 119 Query: 128 M 128 Sbjct: 120 Q 120 >UniRef50_A3IRJ3 Sensor protein n=1 Tax=Cyanothece sp. CCY0110 RepID=A3IRJ3_9CHRO Length = 416 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 71/163 (43%), Gaps = 3/163 (1%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 M L K ILIV+D+ +L + + G +A +G AL+ + P+L++ D+ Sbjct: 1 MILDLSRKHILIVDDKPTNLKVLATTLTEAGLDIAVATNGKMALQQVANDPPELILLDVL 60 Query: 61 MPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP ++G + + ++ P++ ++A + D + L LG D + KP + + Sbjct: 61 MPEIDGFETCKQLKANPETKDIPIIFMTALSDTIDKVRGLSLGAVDYITKPFE-TEEVIA 119 Query: 119 MVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQ 161 + L + VE++ + + ++ ++L Sbjct: 120 RINTHLQLRYLSKTVEQKNQQLTEALERLNKTQQQLIYQEKLA 162 >UniRef50_Q5DYQ2 Two-component response regulator, sigma factor PP2C-like phosphatase n=2 Tax=Vibrio fischeri RepID=Q5DYQ2_VIBF1 Length = 505 Score = 177 bits (449), Expect = 6e-43, Method: Composition-based stats. Identities = 67/336 (19%), Positives = 120/336 (35%), Gaps = 31/336 (9%) Query: 2 TQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAM 61 + ILIVED+ + LL ++ S + +G +AL+ L T DL+I DI M Sbjct: 137 SPSHKHPHILIVEDDAIQSKLLQAYLKS-NFSITATTNGREALQFLQHNTVDLIISDIQM 195 Query: 62 PRMNGLKLLEHI-RNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMV 120 P M+GL+L + + P + +S ++ + A LG++D L KPV+ +L + Sbjct: 196 PEMSGLELRSQLEKENNFSIPFIFLSNLQDTNTVNCAAELGIDDFLQKPVQK-TQLIHSI 254 Query: 121 FACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVA 180 L R + + A+ + K+ L P V+ ++ +Q Sbjct: 255 TRVL------------GRFHQVYHALSEQLNQ--KIAHTLLPQVEAHSDKWKLITQQRTV 300 Query: 181 ADKPGLVLDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPE 240 G + + N+ DV + A GL+ Q+ L + Sbjct: 301 GQGGGDFTL-SRANNNNTLLLLADVMGHDESAKFFAYAYAGYVRGLM------QHADLTQ 353 Query: 241 LGALLKQV-NHLLRQANLPGQF--PLLVGYYHRELKNLILVSAGLNATLNT--GEHQVQI 295 LL Q+ N+ + L + + + + SAG L+ + Sbjct: 354 PSQLLSQLSNNAFKDQLLSQTMLTTCCLSFI--GDDTIKISSAGHPKPLHITPRGINIIE 411 Query: 296 SNGVPLGTLGNAYLNQLSQRCDAWQCQIWGTGGRLR 331 G G L + + + + T G Sbjct: 412 IEGTLPGLLPTTHYKETTISMKYGERLALFTDGLFE 447 >UniRef50_B1VIL1 Two-component system response regulator n=3 Tax=Corynebacterium RepID=B1VIL1_CORU7 Length = 256 Score = 176 bits (448), Expect = 7e-43, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 6/203 (2%) Query: 1 MTQP-LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDI 59 MT P ++L+V+DE L+ G A +G ALE+ + PD I D+ Sbjct: 22 MTTPNTQPVKVLVVDDEDNISDLIKVSLKFQGFDVETADNGQTALEIAETYRPDAFILDV 81 Query: 60 AMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREM 119 MP M+G LL +R G P L ++A + + D L +G +D + KP L + Sbjct: 82 MMPGMDGFTLLNKLREAGHDAPALFLTAKDGVEDRIHGLTIGADDYVTKPFS-LEEVITR 140 Query: 120 VFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKL--LQELQPPVQQVISHCRVNYRQ 177 + L EE + + + D+ K + +L P Q++ + VN Sbjct: 141 LRVILRRVA-KDDSEESSLITYEDITLDDDMHEVTKAGEVVDLSPTEFQLLRYLMVNAEV 199 Query: 178 LVAADKPGL-VLDIAALSENDLA 199 +++ K V + + ++ Sbjct: 200 VLSKSKILDHVWNYDFGGDGNVV 222 >UniRef50_A5F941 Sensor protein n=69 Tax=Vibrionales RepID=A5F941_VIBC3 Length = 1177 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 3/160 (1%) Query: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLKL 69 +L+ +DE V +LDS+ G A DG LE + P+L++ DI MP M+G ++ Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLEAIKREKPELVLLDIMMPGMSGYQV 831 Query: 70 LEHIRNRGDQ--TPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 E +R D P+++++A D + G D L KP L + A L S Sbjct: 832 CEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNK-QELAARIVAHLTAS 890 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQV 167 R E +L ++ A+ + L ++ Sbjct: 891 KAELRRIENAQLQKELKHRAMVEASLLETQGRLLEQLESA 930 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 176 bits (448), Expect = 8e-43, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 80/195 (41%), Gaps = 10/195 (5%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+ EDE RS + G + A +G +AL+ T D+++ DI MP ++G Sbjct: 3 KILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDGFA 62 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 + E R++ + +++++A D L +G +D + KP L + + L Sbjct: 63 VCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSP-AELLARIQSLLRRVE 121 Query: 129 FNSRVEEEERLFRDWDAMVDNPAAAAKLLQ-----ELQPPVQQVISHCRVNYRQLVAADK 183 R ++ L + A ++ + E+ P ++ H N Q+++ D+ Sbjct: 122 TLRRRKQPRELVSGPFRI---DLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQVMSRDE 178 Query: 184 PGL-VLDIAALSEND 197 V + Sbjct: 179 LLDAVWGENYFGDRK 193 >UniRef50_Q2LXQ0 Response regulator with sigma 54 interaction domain n=2 Tax=Deltaproteobacteria RepID=Q2LXQ0_SYNAS Length = 502 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 50/250 (20%), Positives = 99/250 (39%), Gaps = 17/250 (6%) Query: 8 KQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGL 67 +++LIV+DE R +L + G AADG++ALE L D+++ D+ MP+++GL Sbjct: 2 EKVLIVDDELNMRVVLQAMLKKKGYQVAQAADGLEALECLEKEQIDVVVTDLKMPKLSGL 61 Query: 68 KLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 LLEH+ + +TPV++I+A + AL+ G D + KP D + L ++ + Sbjct: 62 GLLEHVTSTYPETPVIIITAHGTIETAVDALKKGAFDYITKPF-DRDELISVIEKAIRTR 120 Query: 128 MFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISHCRVNYRQLVAADKPGLV 187 + N D +V ++ + + ++ + L+ Sbjct: 121 IKNHGEVILAEEEIDKYGIVGCSEKIREIYKTI---------------EKVASTKTTILI 165 Query: 188 LDIAALSENDLAFYCLDVTRAGHNGVLAALLLRALFNGLLQEQLAHQNQRLPELGALLKQ 247 + +A + + + + A+ L++ +L + A K Sbjct: 166 TGETGTGKELIA-HAIHRGSPRKDNAYIKINCGAIAKNLIEAELFGYEKGAFTGAASAKP 224 Query: 248 VNHLLRQANL 257 L Sbjct: 225 GKFELADQGT 234 >UniRef50_A9AW15 Adenylate/guanylate cyclase n=2 Tax=Bacteria RepID=A9AW15_HERA2 Length = 355 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 88/201 (43%), Gaps = 14/201 (6%) Query: 1 MTQPLVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIA 60 MT +IL+V+D + R LL VLA +G AL+ + T DL++ DI Sbjct: 1 MT--ATQPRILVVDDSEDNRYLLQRQLLRRNYGVVLAENGQQALDYVQSHTIDLILLDIM 58 Query: 61 MPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLRE 118 MP MNG ++L++++ PV+++SA ++M ++ K +++G ED L KP LR Sbjct: 59 MPVMNGFEVLQNLKQNEQLRHIPVIIVSAADDMENVVKGIQMGAEDYLAKPFN-TTLLRA 117 Query: 119 MVFACLYPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPV---QQVISHCRVNY 175 + A L + + A+ A + +LL+ + P Q + Sbjct: 118 RIEASLEKKRLHD------QEQAYLQAIALEQAQSNRLLRNILPQTIADQLKDQQANIAE 171 Query: 176 RQLVAADKPGLVLDIAALSEN 196 + ++ LS + Sbjct: 172 YFSSVSVLFADIVGFTELSGH 192 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 176 bits (447), Expect = 9e-43, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 2/123 (1%) Query: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRMNGLK 68 +IL+V+DE R LL + A +G +A+ DL++ D+ MP +G++ Sbjct: 8 KILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIE 67 Query: 69 LLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 + IR + TP+++++A A+ + G +D ++KP + V A L + Sbjct: 68 VCRQIREK-KATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSP-REVVLRVKALLRRAS 125 Query: 129 FNS 131 S Sbjct: 126 QTS 128 >UniRef50_C9RLA0 Two component transcriptional regulator, winged helix family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA0_FIBSS Length = 238 Score = 176 bits (447), Expect = 1e-42, Method: Composition-based stats. Identities = 38/197 (19%), Positives = 73/197 (37%), Gaps = 10/197 (5%) Query: 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFTPDLMICDIAMPRM 64 + +ILIVEDE++ R L F A DG +A+ F P L++ D+ +P+ Sbjct: 1 MQQHRILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKK 60 Query: 65 NGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACL 124 +G ++ IR + + +++++A L +G +D + KP L L V A L Sbjct: 61 SGFEVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSIL-ELLARVKAFL 119 Query: 125 YPSMFNSRVEEEERLFRDWDAMVDNPAAAAKLLQELQPPVQQVISH---------CRVNY 175 ++ ++L + K + V +S + Sbjct: 120 RRIDLQTQANPTKQLASVDAIDFADIHLDFKKFIATKGGVPLELSTREFQILKYFWQRRG 179 Query: 176 RQLVAADKPGLVLDIAA 192 ++ D + Sbjct: 180 EVVLREDLLQDLWGYTP 196 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.162 0.481 Lambda K H 0.267 0.0498 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,161,277,708 Number of Sequences: 3077464 Number of extensions: 110024259 Number of successful extensions: 448613 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 39594 Number of HSP's successfully gapped in prelim test: 12718 Number of HSP's that attempted gapping in prelim test: 341655 Number of HSP's gapped (non-prelim): 60760 length of query: 337 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 208 effective length of database: 643,403,500 effective search space: 133827928000 effective search space used: 133827928000 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 94 (40.5 bits)