HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/30cf4643189499d4/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/30cf4643189499d4/query.hhm DATE Mon Jan 16 16:13:39 2012 LENG 109 match states, 109 columns in multiple alignment FILT 15 out of 17 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 2.6 EVD 0.4154 0.1952 SEQ >ss_pred CCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHHHH HHHHHHHCC >ss_conf 9532101332114567679999999999999744831378763279999999980999999999999987576448731000003820116899987765 536764259 >Consensus mktlxxxxxrxxxxxxsxvxxwQxllxxLLxxHYGltLNDTxxxdexvVxxxiexGItpxxAVNxLvxKYxLxRxDxxgfsxxxxsPxlnxxDxlrArxa xglxxxxxx >batch____ MNTLPATISQAAKPCLSPVAVWQMLLTRLLEQHYGLTLNDTPFSDETVIKEHIDAGITLADAVNFLVEKYELVRIDHRGFSWQQQSPYISVVDILRARRS TGLLKTNVK >UniRef50_A7FEQ6(3-102:118) Putative uncharacterized protein n=8 Tax=Yersinia RepID=A7FEQ6_YERP3 E=5e-36 s/c=1.52 id=49% cov=93% ----PRATAQGALPVP---VIYQQLLAFLLEHHYGLSLNDTPYHDEQVIAQQIEQGISVGDTINALVDKYALVRIGRNGFSALVQDPMLSKGDIARARQA AGLWRAH-- >UniRef50_C4T7A2(6-75:106) Putative uncharacterized protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4T7A2_YERIN E=3e-11 s/c=1.00 id=45% cov=61% ---------------------YQTIAAYLLEKHFGLTLNDTNLHDDTVVQELVELNVPVFEAINQLVEKYHLDRIDQN--DWSPRSPLL----------- --------- >UniRef50_B4EXF2(9-83:99) Putative uncharacterized protein n=2 Tax=Proteus mirabilis RepID=B4EXF2_PROMH E=4e-07 s/c=0.74 id=39% cov=70% ---------------------FQLLVHQLLQVHYGITLSDTGLSDDAEVSRMIELGISPVSVVNRLVDKYHLDKL--NASCYLPASPYVSDSDALLAQ-- --------- >UniRef50_A1JPX9(2-79:95) Putative uncharacterized protein n=4 Tax=Enterobacteriaceae RepID=A1JPX9_YERE8 E=5e-23 s/c=1.38 id=41% cov=67% ---------------------WQLTASALFNKHFGLTLNDTDFCEETCVVALYETGKRPFEAINGLVDKYNLARLNNNAF--QPRSPYLNAIDEL----- --------- >UniRef50_UPI000190A9E4(64-133:202) hypothetical protein Salmoneentericaenterica_21035 n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI000190A9E4 E=3e-22 s/c=1.50 id=34% cov=65% --------LKERRPSMTTVEMWQKMASLILETHYGFSLDDTTLGCRSVVERHIECGITPLMAINALARIYQWERYDQP---------------------- --------- >UniRef50_Q7N7J1(273-339:657) Complete genome; segment 4/17 n=17 Tax=Enterobacteriaceae RepID=Q7N7J1_PHOLL E=3e-20 s/c=1.48 id=42% cov=59% ---------------PSQVELWQQMAAVLLSEHYGLPLNDTMLEYDEVVQRHIDEGITPLMAVSALARIYHWERRDQP---------------------- --------- >UniRef50_D0KGY4(273-349:653) Putative uncharacterized protein n=2 Tax=Pectobacterium RepID=D0KGY4_PECWW E=2e-12 s/c=0.95 id=32% cov=72% ------------------VQHWQRQAEHLLTTHYGQQLDDTTLVCDSVVHQHLRYNISPGNAVNALARIYDWPRCDMPTALF---TPELNSVADALAR-- --------- >UniRef50_C4SB06(1-102:111) Putative uncharacterized protein n=1 Tax=Yersinia mollaretii ATCC 43969 RepID=C4SB06_YERMO E=2e-30 s/c=1.29 id=45% cov=94% MKTLDKIP-RITPSANQARTEYQQLLTWLLAHCYGLELNDTPYHDEEAIAQQIEHGVTVRETVNELVEKFDLVRIDRSGFSLMAQDPTLNGGDLLRARSA LGL------ >UniRef50_C4SWK2(7-71:76) Putative uncharacterized protein n=1 Tax=Yersinia intermedia ATCC 29909 RepID=C4SWK2_YERIN E=2e-16 s/c=1.33 id=41% cov=51% ---------------------WQRVLNKLLHKHYGIDINDTAFSEINYARHYWDDCIRPYQAVNEWASKYDLCRLD------------------------ --------- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 1884 0 0 N 2 * * * * * * * * 388 * * 2085 * * * * * * * * 2 0 * * * * * * 1884 0 0 T 3 * * * * * * * 2711 * * * * * * * * 239 * * * 3 0 * * * * * * 1884 0 0 L 4 * * * * * * * 2711 * 239 * * * * * * * * * * 4 0 * * * * * * 1884 0 0 P 5 * * 2306 * * * * * * * * * 541 * * 3174 * * * * 5 0 * * * * * * 2046 0 0 A 6 1575 * 2267 * * * * * 2306 * * * * * 2871 * * 3088 * * 6 0 * * * * * * 2046 0 0 T 7 2871 * * * * * * 1659 * 3088 * * * * * * 1221 * * * 7 0 * * * * * * 2046 0 0 I 8 * * * * * * 2267 3237 * * * * 1645 * * * 1449 * * * 8 326 * 2306 * * * * 2046 0 0 S 9 2825 * * * * 3328 * * * 1455 * * * 3204 * 3386 * 2394 * * 9 0 * * * * 0 * 2103 0 1000 Q 10 * * * * * * * * 2171 * * * * 1895 974 * * * * * 10 0 * * * * * * 2345 0 0 A 11 1508 * * 1395 * 3260 * 2609 * * * * * * * * * * * * 11 0 * * * * * * 2345 0 0 A 12 1538 * * * * * * * * * * * * * 2171 * 1959 2504 * * 12 0 * * * * * * 2345 0 0 K 13 * * * * * * * * 2515 3260 * * 2609 * 2171 2050 3423 * * * 13 0 * * * * * * 2345 0 0 P 14 * * * * * * * * * * * * 996 * 2661 1554 * * * * 14 0 * * * * * * 2345 0 0 C 15 2609 1586 * * * * * * * * * * * * 3584 2171 * 3260 * 3423 15 0 * * * * * * 2345 0 0 L 16 * * * * * * * * * 1966 2590 2719 1231 * * * * * * * 16 169 * 3177 * * * * 2344 0 0 S 17 * * * * * * * * * * * * * 2449 * 694 2331 * * * 17 0 * * * * * 0 2192 0 1000 P 18 2449 * * * * * * * * * * * 1065 2835 * * 2331 * * * 18 0 * * * * * 0 2192 0 1000 V 19 * * * * * * * * * * * * * * 2550 * * 270 * * 19 0 * * * * 0 * 2355 0 1000 A 20 2788 * * 1692 * * * * * * * * * 2850 * * 2101 2522 * * 20 0 * * * * * * 2390 0 0 V 21 * * * 2815 * * 2850 2006 * 3092 2949 * * * * * * 2162 * * 21 0 * * * * * * 2390 0 0 W 22 * * * * 3370 * * * * * * * * * * * * * 531 2242 22 0 * * * * * * 2937 0 0 Q 23 * * * * * * * * * * * * * 0 * * * * * * 23 0 * * * * * * 2937 0 0 M 24 * * * * * * * 3479 3559 2365 3582 * * 2199 2310 * 2962 * * * 24 0 * * * * * * 2937 0 0 L 25 * * * * * * * 3812 * 1098 2622 * * 3477 * * 3360 3159 * * 25 0 * * * * * * 2937 0 0 L 26 1249 * * * * * * * * 1052 * * * * * * * 3370 * * 26 0 * * * * * * 2937 0 0 T 27 1948 * * 3477 * * 3370 5806 * * * 3159 * * * 2171 2305 * * * 27 0 * * * * * * 2937 0 0 R 28 3360 * * * 4047 * 3477 * 3159 3559 * * * 3370 2118 * * 3687 3650 3812 28 0 * * * * * * 2937 0 0 L 29 * * * * * * * 3559 * 128 * * * * * * * * * * 29 0 * * * * * * 2937 0 0 L 30 * * * * 3360 * * * * 148 * * * * * * * * * * 30 0 * * * * * * 2937 0 0 E 31 3650 * 3365 1515 * * 3159 * * * * 3360 * 3370 * 3687 3477 * * * 31 0 * * * * * * 2937 0 0 Q 32 * * * 3687 * * 2835 * 1834 * * * * 2118 * * 2518 3370 * * 32 0 * * * * * * 2937 0 0 H 33 * 3650 * * * * 120 * * * * * * * * * * * * * 33 0 * * * * * * 2937 0 0 Y 34 * * * * 2568 * * * * * * * * * * * * * * 266 34 0 * * * * * * 2937 0 0 G 35 * * * * * 0 * * * * * * * * * * * * * * 35 0 * * * * * * 2937 0 0 L 36 * * * * 3559 * * 2261 * 697 * * * 3477 * * * * * * 36 0 * * * * * * 2937 0 0 T 37 * * 3159 3650 * * * * * * * 4328 3687 3477 * 2783 1165 * * * 37 0 * * * * * * 2937 0 0 L 38 * * * * * * * 2675 * 246 * * * * * * * * * * 38 0 * * * * * * 2937 0 0 N 39 * * 2518 * * * * * * * * 457 * * * 3370 * * * * 39 0 * * * * * * 2937 0 0 D 40 * * 0 * * * * * * * * * * * * * * * * * 40 0 * * * * * * 2937 0 0 T 41 * * * * * * * * * * * * * * * * 0 * * * 41 0 * * * * * * 2937 0 0 P 42 3159 * 3360 * * 3370 * * * * 3687 3812 1433 * * * 2518 * * * 42 0 * * * * * * 2937 0 0 F 43 * * * * 1186 * * * * 1251 * * * * * * * * * 2835 43 0 * * * * * * 2937 0 0 S 44 3365 2815 * 3687 * 3559 2242 * * * * 4328 * * * 2015 * 3477 * * 44 0 * * * * * * 2937 0 0 D 45 * 2507 1186 2262 * * * * * * * 3337 * * * * * * * 3696 45 0 * * * * * * 2958 0 0 E 46 * * 1574 1086 * * * 3195 * * * * * * 3574 * * * * * 46 0 * * * * * * 2958 0 0 T 47 2813 * * 2650 * * * * 4267 * * 3195 * 4033 3578 2507 2208 * * * 47 0 * * * * * * 2958 0 0 V 48 3606 3333 * 3391 * * * * * * * * * * * * * 704 * 3195 48 0 * * * * * * 2958 0 0 I 49 3195 * * * * * * 1428 * * * * * * * * * 946 * * 49 0 * * * * * * 2958 0 0 K 50 2804 * * 2576 * * 3444 * 3430 * * * * 2318 3195 3391 * 3333 * * 50 0 * * * * * * 2958 0 0 E 51 3333 * * 2210 * * 3195 * * * * * * 1649 1963 * * * * * 51 0 * * * * * * 2958 0 0 H 52 * * * * * * 1219 * * 2550 3391 * * 2804 4267 * * * * 3195 52 0 * * * * * * 2958 0 0 I 53 * * * * * * * 671 * 3444 * * * * * * * 3806 3195 3333 53 0 * * * * * * 2958 0 0 D 54 * * 1595 793 * * * * * * * * * * 3444 * * * * * 54 0 * * * * * * 2958 0 0 A 55 2130 3574 3195 3696 * * 3606 * * 2584 * * * 4033 * * 3333 * * 3444 55 0 * * * * * * 2958 0 0 G 56 * 3195 * * * 459 * * * * * 2614 * * * * * * * * 56 0 * * * * * * 2958 0 0 I 57 * * * * * * * 421 3333 * * * * * * * * 2703 * * 57 0 * * * * * * 2958 0 0 T 58 * * * * * * * * * * * * 3806 * 2262 1591 1366 * * * 58 0 * * * * * * 2958 0 0 L 59 * * * * * * * * * 2130 * * 845 * * * * 2220 * * 59 0 * * * * * * 2958 0 0 A 60 3430 3578 * * 2550 2708 * * * 2633 * * * * 3606 * * 2764 * 3195 60 0 * * * * * * 2958 0 0 D 61 * * 1788 1983 * * * * * * 2633 3444 * 3195 * 3391 * * * * 61 0 * * * * * * 2958 0 0 A 62 393 * * * * * * * * * * * * * * * 2804 3391 * * 62 0 * * * * * * 2958 0 0 V 63 * * * * * * * 1663 * * * * * * * * * 548 * * 63 0 * * * * * * 2958 0 0 N 64 * * * * * * * * * * * 116 * * * 3696 * * * * 64 0 * * * * * * 2958 0 0 F 65 1670 * * 2385 2130 3333 * * * * * * * 3806 3391 * * * * * 65 0 * * * * * * 2958 0 0 L 66 * * * * * * * * * 167 * * * * * * * * 3195 * 66 0 * * * * * * 2958 0 0 V 67 1465 * * * * * * * * * * * * * * * * 649 * * 67 0 * * * * * * 2958 0 0 E 68 * * 1968 1388 * * * * * * * * * * 1982 3195 * * * * 68 0 * * * * * * 2958 0 0 K 69 * * * * * * * 1982 421 * * * * * * * * * * * 69 0 * * * * * * 2958 0 0 Y 70 * * * * 3606 * * * * * * * * * * * * * * 124 70 0 * * * * * * 2958 0 0 E 71 2788 * 1820 2789 * * 2035 * * * * 3333 * 3574 * * * * * * 71 0 * * * * * * 2958 0 0 L 72 * * * * * * * * * 421 * * * * * * * * 1982 * 72 0 * * * * * * 2958 0 0 V 73 3333 3195 2584 2633 * * * 4267 * * * * 3444 * * * * 1645 * * 73 0 * * * * * * 2958 0 0 R 74 * * * * * * * * 3391 * * * * * 145 * * * * * 74 0 * * * * * * 2958 0 0 I 75 * 3444 * * * * * 1476 * 1719 * * * * 3696 * 3578 * * 3574 75 145 * 3391 * * * * 2958 0 0 D 76 * * 283 * * 3855 * * * * * 3194 * * * * * * * * 76 0 * * * * * 0 2836 0 1000 H 77 * * * * * * 4115 * * * 3107 2976 * 1345 1712 * * * * * 77 0 * * * * 0 * 2615 0 1000 R 78 * * * * * * * * 3120 * * 1445 1413 * 4286 3462 * * * * 78 148 * 3362 * * * * 2757 0 0 G 79 1846 * * * * 855 * * * * * * * * * * 2564 * * * 79 0 * * * * * 0 2574 0 1000 F 80 2564 * * * 556 * * * * * * * * * * 2730 * * * * 80 197 * 2971 * * 0 * 2574 0 1000 S 81 * 2683 3274 * * * * * * 2560 * * * * * 808 * * * * 81 0 * * * * * 0 2487 0 1000 W 82 2095 * * * 2560 * * * * 3150 * * * * * * * * 1608 2683 82 268 * 2560 * * 0 * 2487 0 1000 Q 83 * 2771 * * * * * * * 1939 3080 * * 1434 * 3263 * * * * 83 0 * * * * * 0 2376 0 1000 Q 84 3080 * * 2619 * * * * * * * * 1335 3757 * * 2771 3290 * * 84 0 * * * * * 0 2376 0 1000 Q 85 2657 * * * * * * * * * * * * 1129 1380 * * * * * 85 0 * * * * 0 * 2376 0 1000 S 86 * * 2410 * * * * * * * * * * * * 776 2134 * * * 86 0 * * * * * * 2681 0 0 P 87 * * * * * * * * * * * * 189 3026 * * * * * * 87 0 * * * * * * 2681 0 0 Y 88 * * * 2670 * * * * * 2266 3568 * * * * * 3268 * * 1162 88 0 * * * * * * 2681 0 0 I 89 * * * * * * * 2430 * 554 * * * * * * * 2910 * * 89 0 * * * * * * 2681 0 0 S 90 * * * * * * * * * * * 881 * * 2766 1689 * * * * 90 0 * * * * * * 2574 0 0 V 91 1865 * 2730 * * 3163 * * 3450 * * * * * * 1719 * 3881 * * 91 0 * * * * * * 2574 0 0 V 92 3823 * * * * 2299 * 1931 * * * * * * * 2730 * 1675 * * 92 0 * * * * * * 2574 0 0 D 93 2564 * 267 * * * * * * * * * * * * * * * * * 93 0 * * * * * * 2574 0 0 I 94 2730 * 2564 2971 * * * 1455 * 3163 * * * * * * * 3711 * * 94 0 * * * * * * 2574 0 0 L 95 1940 * * * * * * * * 436 * * * * * * * * * * 95 0 * * * * * * 2574 0 0 R 96 * * * * * * * * * 1462 * * * * 651 * * * * * 96 0 * * * * * * 2404 0 0 A 97 0 * * * * * * * * * * * * * * * * * * * 97 0 * * * * * * 2404 0 0 R 98 * * * * * * * * * * * * * 2525 275 * * * * * 98 0 * * * * * * 2404 0 0 R 99 * * * * * * * * * * * * * 1246 1400 2325 * * * * 99 0 * * * * * * 1889 0 0 S 100 194 * * * * * * * * * * * * * * 2994 * * * * 100 0 * * * * * * 1889 0 0 T 101 2613 * * * * * * * * 2325 * * * * * * 651 * * * 101 0 * * * * * * 1889 0 0 G 102 * * * * * 0 * * * * * * * * * * * * * * 102 0 * * * * * * 1889 0 0 L 103 * * * * * * * * * 0 * * * * * * * * * * 103 0 * * * * * * 1889 0 0 L 104 * * * * * * * * * 1378 1456 * * * * * * * 1996 * 104 0 * * * * * * 1634 0 0 K 105 * * * * * * * * 1666 * * * * * 546 * * * * * 105 0 * * * * * * 1467 0 0 T 106 1043 * * * * * * * * * * * * * * * 959 * * * 106 0 * * * * * * 1409 0 0 N 107 * * * * * * 1043 * * * * 959 * * * * * * * * 107 0 * * * * * * 1409 0 0 V 108 * * * * * * * * * * * * * * * * * 0 * * 108 0 * * * * * * 1000 0 0 K 109 * * * * * * * * 0 * * * * * * * * * * * 109 0 * * 0 * * * 1000 0 0 //