BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (239 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P52108 Transcriptional regulatory protein rstA n=163 Ta... 488 e-137 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 213 4e-54 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 211 1e-53 UniRef50_Q3KAS5 Two-component system, response regulator n=2 Tax... 209 5e-53 UniRef50_A9ANV0 Two component transcriptional regulator, winged ... 207 2e-52 UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromo... 205 1e-51 UniRef50_Q2S9I1 Response regulator consisting of a CheY-like rec... 197 3e-49 UniRef50_D0Z2F0 DNA-binding response regulator n=1 Tax=Photobact... 197 3e-49 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 196 7e-49 UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regu... 195 1e-48 UniRef50_A4CEI9 Transcriptional regulatory protein RstA n=3 Tax=... 194 2e-48 UniRef50_Q3JG93 Response regulator protein n=61 Tax=Proteobacter... 189 9e-47 UniRef50_B7VQ15 DNA-binding response regulator n=8 Tax=Vibrional... 186 6e-46 UniRef50_A9KX94 Two component transcriptional regulator, winged ... 184 2e-45 UniRef50_A8FS20 Response regulator consisting of a CheY-like rec... 182 7e-45 UniRef50_A1S1W0 Response regulator receiver protein n=1 Tax=Shew... 177 2e-43 UniRef50_Q2S740 Response regulator consisting of a CheY-like rec... 176 5e-43 UniRef50_Q9APH8 Possible transcriptional regulatory protein n=2 ... 175 9e-43 UniRef50_A6VT30 Two component transcriptional regulator, winged ... 175 1e-42 UniRef50_A3QF24 Two component transcriptional regulator, winged ... 172 6e-42 UniRef50_C9NPC4 Putative DNA-binding response regulator n=1 Tax=... 169 7e-41 UniRef50_A6FAL7 DNA-binding response regulator n=1 Tax=Moritella... 168 1e-40 UniRef50_Q7UJC9 Probable two-component response regulator n=1 Ta... 168 1e-40 UniRef50_Q488T3 DNA-binding response regulator n=4 Tax=Alteromon... 163 6e-39 UniRef50_A6GGY5 Two component transcriptional regulator, winged ... 161 2e-38 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 158 1e-37 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 157 3e-37 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 155 1e-36 UniRef50_B8IGE5 Two component transcriptional regulator, winged ... 154 2e-36 UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=... 154 2e-36 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 153 4e-36 UniRef50_Q3KB13 Two component Transcriptional regulator, Winged ... 153 5e-36 UniRef50_A0L0G2 Two component transcriptional regulator, winged ... 152 1e-35 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 151 2e-35 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 151 2e-35 UniRef50_Q47ZK7 DNA-binding response regulator n=2 Tax=Alteromon... 150 2e-35 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 148 2e-34 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 147 2e-34 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 147 3e-34 UniRef50_B8JG70 Two component transcriptional regulator, winged ... 145 9e-34 UniRef50_Q212W6 Two component transcriptional regulator, winged ... 145 2e-33 UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria... 144 2e-33 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 144 2e-33 UniRef50_A0LCI2 Two component transcriptional regulator, winged ... 144 3e-33 UniRef50_A1S945 Response regulator receiver protein n=1 Tax=Shew... 143 4e-33 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 143 4e-33 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 143 5e-33 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 143 5e-33 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 143 6e-33 UniRef50_A0L7S7 Two component transcriptional regulator, winged ... 143 6e-33 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 142 1e-32 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 142 1e-32 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 141 2e-32 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 141 2e-32 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 140 3e-32 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 140 5e-32 UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionell... 139 6e-32 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 139 7e-32 UniRef50_B9B7R2 DNA-binding response regulator n=1 Tax=Burkholde... 139 7e-32 UniRef50_Q3A1Q2 Two component transcriptional regulator, winged ... 139 1e-31 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 138 1e-31 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 138 1e-31 UniRef50_A4B9H2 Probable two-component response regulator n=1 Ta... 138 2e-31 UniRef50_A9AIE8 Two component transcriptional regulator, winged ... 138 2e-31 UniRef50_C4KB06 Two component transcriptional regulator, winged ... 137 2e-31 UniRef50_C8SEM3 Two component transcriptional regulator, winged ... 137 3e-31 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 137 3e-31 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 137 3e-31 UniRef50_C7I0W4 Two component transcriptional regulator, winged ... 136 5e-31 UniRef50_A5VZA1 Two component transcriptional regulator, winged ... 135 9e-31 UniRef50_B7VSG2 Response regulator n=19 Tax=Gammaproteobacteria ... 135 1e-30 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 135 1e-30 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 135 1e-30 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 135 1e-30 UniRef50_Q3A7S2 Putative two component response regulator n=1 Ta... 134 2e-30 UniRef50_A0LA52 Two component transcriptional regulator, winged ... 134 2e-30 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 134 2e-30 UniRef50_B8G179 Two component transcriptional regulator, winged ... 134 3e-30 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 134 3e-30 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 133 4e-30 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 133 4e-30 UniRef50_B2V706 Two component transcriptional regulator, winged ... 133 5e-30 UniRef50_B8I272 Two component transcriptional regulator, winged ... 133 5e-30 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 133 6e-30 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 132 7e-30 UniRef50_B5J7Y1 Response regulator receiver domain protein n=1 T... 132 7e-30 UniRef50_Q1K367 Two component transcriptional regulator, winged ... 132 8e-30 UniRef50_C4TUI5 Response regulator consisting of a CheY-like rec... 132 8e-30 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 132 9e-30 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 132 1e-29 UniRef50_D1C280 Two component transcriptional regulator, winged ... 131 2e-29 UniRef50_C8Q1W1 Two component transcriptional regulator, winged ... 131 2e-29 UniRef50_A3Y9U3 Response regulator protein n=1 Tax=Marinomonas s... 131 2e-29 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 131 2e-29 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 131 2e-29 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 131 2e-29 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 131 2e-29 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 131 2e-29 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 130 3e-29 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 130 3e-29 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 130 3e-29 UniRef50_D1U371 Two component transcriptional regulator, winged ... 130 4e-29 UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regu... 130 4e-29 UniRef50_A8VQC0 Response regulator receiver protein n=2 Tax=Baci... 130 4e-29 UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromon... 130 5e-29 UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobac... 129 6e-29 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 129 7e-29 UniRef50_A1VTZ3 Two component transcriptional regulator, winged ... 129 7e-29 UniRef50_Q2NZ71 Two-component system regulatory protein n=18 Tax... 129 7e-29 UniRef50_Q1LHM7 Two component transcriptional regulator, winged ... 129 9e-29 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 129 9e-29 UniRef50_B7VKB0 Putative response regulator n=1 Tax=Vibrio splen... 129 1e-28 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 129 1e-28 UniRef50_B6R185 Response regulator in two-component regulatory s... 129 1e-28 UniRef50_B0KI24 Two component transcriptional regulator, winged ... 129 1e-28 UniRef50_C0Z911 Two-component response regulator n=4 Tax=Firmicu... 127 2e-28 UniRef50_C1IA20 Two-component system response regulator n=1 Tax=... 127 2e-28 UniRef50_B4SKL2 Two component transcriptional regulator, winged ... 127 3e-28 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 127 3e-28 UniRef50_A9BR19 Two component transcriptional regulator, winged ... 127 3e-28 UniRef50_Q2BRQ1 Transcriptional regulatory protein CpxR (Fragmen... 127 3e-28 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 127 3e-28 UniRef50_B9L1L3 Two-component response regulator n=1 Tax=Thermom... 127 4e-28 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 127 4e-28 UniRef50_A3ERN0 Putative two component transcriptional regulator... 126 5e-28 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 126 5e-28 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 126 6e-28 UniRef50_C5D1A0 Two component transcriptional regulator, winged ... 126 6e-28 UniRef50_Q21BK9 Two component transcriptional regulator, winged ... 126 7e-28 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 126 7e-28 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 126 7e-28 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 125 1e-27 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 125 1e-27 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 125 1e-27 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 125 1e-27 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 125 1e-27 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 124 2e-27 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 124 3e-27 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 124 3e-27 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 124 3e-27 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 124 3e-27 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 124 3e-27 UniRef50_Q398T9 Two component transcriptional regulator, winged ... 124 3e-27 UniRef50_B9E984 Putative uncharacterized protein n=1 Tax=Macroco... 124 3e-27 UniRef50_C4ZP42 Two component transcriptional regulator, winged ... 124 3e-27 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 124 3e-27 UniRef50_B3E8G4 Two component transcriptional regulator, winged ... 124 4e-27 UniRef50_B6ITF9 TorCAD operon transcriptional regulatory protein... 123 4e-27 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 123 6e-27 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 123 6e-27 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 123 6e-27 UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphap... 123 6e-27 UniRef50_A4J267 Two component transcriptional regulator, winged ... 123 7e-27 UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax... 122 7e-27 UniRef50_C5CP31 Two component transcriptional regulator, winged ... 122 9e-27 UniRef50_D2B5L0 Response regulator receiver protein n=15 Tax=Act... 122 1e-26 UniRef50_UPI0001692EE0 response regulator n=1 Tax=Paenibacillus ... 122 1e-26 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 122 1e-26 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 122 1e-26 UniRef50_UPI0001C36ECD response regulator n=1 Tax=Ruminococcus f... 122 1e-26 UniRef50_A8SYK9 Putative uncharacterized protein n=3 Tax=Clostri... 122 1e-26 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 121 2e-26 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 121 2e-26 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 121 2e-26 UniRef50_A1B7Z0 Two component transcriptional regulator, winged ... 121 2e-26 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 121 2e-26 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 121 2e-26 UniRef50_A9ASF4 Two component transcriptional regulator, winged ... 120 3e-26 UniRef50_A9AVR8 Two component transcriptional regulator, winged ... 120 3e-26 UniRef50_B7K2G1 Two component transcriptional regulator, winged ... 120 3e-26 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 120 4e-26 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 120 4e-26 UniRef50_B1ZLF1 Two component transcriptional regulator, winged ... 120 5e-26 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 120 5e-26 UniRef50_A5W315 Two component transcriptional regulator, winged ... 120 5e-26 UniRef50_A4ZV27 RsrR n=2 Tax=Acidithiobacillus caldus RepID=A4ZV... 119 6e-26 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 119 6e-26 UniRef50_B6IYL9 Two-component response regulator GltR n=1 Tax=Rh... 119 6e-26 UniRef50_A3W0Y1 DNA-binding response regulator TorR n=2 Tax=Rose... 119 7e-26 UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomyceta... 119 7e-26 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 119 7e-26 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 119 8e-26 UniRef50_C0QDS5 Two-component response regulator (OmpR-like prot... 119 8e-26 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 119 9e-26 UniRef50_Q488W3 DNA-binding response regulator n=3 Tax=Alteromon... 119 9e-26 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 119 9e-26 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 119 1e-25 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 119 1e-25 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 119 1e-25 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 119 1e-25 UniRef50_Q1GLX1 Two component transcriptional regulator, winged ... 119 1e-25 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 119 1e-25 UniRef50_A9WLJ1 Two-component response regulator n=4 Tax=Actinom... 119 1e-25 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 118 1e-25 UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmic... 118 1e-25 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 118 1e-25 UniRef50_C6BZU5 Two component transcriptional regulator, winged ... 118 1e-25 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 118 2e-25 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 118 2e-25 UniRef50_D1AJ61 Two component transcriptional regulator, winged ... 118 2e-25 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 118 2e-25 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 117 2e-25 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 117 2e-25 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 117 3e-25 UniRef50_A3JEV6 Two comoponent transcriptional regulator, winged... 117 3e-25 UniRef50_Q07HV3 Two component transcriptional regulator, winged ... 117 3e-25 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 117 3e-25 UniRef50_A9D5A2 Osmolarity response regulator n=1 Tax=Hoeflea ph... 117 4e-25 UniRef50_A6VRR3 Two component transcriptional regulator, winged ... 117 4e-25 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 117 4e-25 UniRef50_A4AL32 Putative two-component system response regulator... 117 4e-25 UniRef50_Q04942 Transcriptional regulatory protein afsQ1 n=34 Ta... 117 4e-25 UniRef50_Q15TH0 Two component transcriptional regulator, winged ... 117 4e-25 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 117 5e-25 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 116 5e-25 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 116 5e-25 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 116 5e-25 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 116 6e-25 UniRef50_A7ZAG8 MrsR2 n=2 Tax=Bacillus RepID=A7ZAG8_BACA2 116 6e-25 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 116 6e-25 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 116 6e-25 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 116 6e-25 UniRef50_D1AFR9 Two component transcriptional regulator, winged ... 116 6e-25 UniRef50_Q1J3D6 Two component transcriptional regulator, winged ... 116 6e-25 UniRef50_B1WTP9 Two-component response regulator n=12 Tax=Cyanob... 116 7e-25 UniRef50_P76340 Probable transcriptional regulatory protein yedW... 116 7e-25 UniRef50_A3JW86 DNA-binding response regulator n=1 Tax=Rhodobact... 116 7e-25 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 116 8e-25 UniRef50_B1QVC8 DNA-binding response regulator n=9 Tax=Bacteria ... 116 8e-25 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 116 8e-25 UniRef50_Q020N6 Two component transcriptional regulator, winged ... 116 8e-25 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 115 8e-25 UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria... 115 1e-24 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 115 1e-24 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 115 1e-24 UniRef50_A8GHG0 Two component transcriptional regulator, winged ... 115 1e-24 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 115 1e-24 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 115 1e-24 UniRef50_A4VMA3 DNA-binding response regulator n=8 Tax=Pseudomon... 115 1e-24 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 115 1e-24 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 115 1e-24 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 115 1e-24 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 115 1e-24 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 115 1e-24 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 115 1e-24 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 115 1e-24 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 115 1e-24 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 115 1e-24 UniRef50_A6VZA5 Two component transcriptional regulator, winged ... 115 2e-24 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 115 2e-24 >UniRef50_P52108 Transcriptional regulatory protein rstA n=163 Tax=Proteobacteria RepID=RSTA_ECOLI Length = 239 Score = 488 bits (1257), Expect = e-137, Method: Compositional matrix adjust. Identities = 239/239 (100%), Positives = 239/239 (100%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG Sbjct: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE Sbjct: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI Sbjct: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE Sbjct: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 213 bits (542), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 108/234 (46%), Positives = 152/234 (64%), Gaps = 8/234 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDD + L YL K+ M V +E G++A I+ E PDLV+LD+MLPG DG+T+ Sbjct: 12 ILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSDGLTV 71 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR++R + PI++LT+ DM+ +L LEMGA DY+ K P VLLAR+R LR++E A Sbjct: 72 CREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSENAP 131 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + P + L FG L ID R VTL + ++A+++LLW LA++AG+I+ R Sbjct: 132 -------SEEIPQR-LEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRILSR 183 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + + + LRG+ YDG DRS+DV ISR+R K+ D+ P RIKTVR+KGYLF Sbjct: 184 EDIFERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEG 237 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 211 bits (538), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 109/238 (45%), Positives = 154/238 (64%), Gaps = 5/238 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDD + L YL + + V+VEP G +A E I E PDLV+LD+MLPG+DG++I Sbjct: 28 ILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGEDGLSI 87 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR----QN 119 CR +R ++GPI++LT+ D++ +L LEMGA DY+ K P VLLAR+R LR Q Sbjct: 88 CRKVRPSYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLRRVKEQG 147 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 E A + +++ P + L F L ID R L + I L++A+F+LLW LA+ AG+ Sbjct: 148 EAAAESPIAEQSGDGPVR-LVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWLLASSAGR 206 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 ++ R+ + LRG+ YDG DRS+DV +SR+R K+ D+ P RIKTVR+KGYLF A Sbjct: 207 VLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYLFVKEA 264 >UniRef50_Q3KAS5 Two-component system, response regulator n=2 Tax=Proteobacteria RepID=Q3KAS5_PSEPF Length = 235 Score = 209 bits (533), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 113/240 (47%), Positives = 151/240 (62%), Gaps = 12/240 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 ++ VEDD + +LIA +L +H +V RGD A L P +V+LD+MLPG+ G Sbjct: 6 FGRVLLVEDDERLAALIAHFLEQHGYEVRTVHRGDLAVAAFLEFKPKVVVLDLMLPGQSG 65 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLR-LHLRQN 119 + +CR++R+ PIV+LT+ + D++HIL LE GA DY++K P VLLARLR L RQ Sbjct: 66 LHVCREIRSVSDTPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRRQV 125 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + + L+ FG L ID R V LA I L+T +FELLW LA+ AG+ Sbjct: 126 PDSGVVSSLE-----------FGNLIIDRSCREVRLAGELIELTTMEFELLWLLASAAGK 174 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 I+ RD +L +RG+++DGL+RSVDV IS+LR KL DN EP IKTV KGYLF P AWE Sbjct: 175 ILSRDDILNRMRGIAFDGLNRSVDVYISKLRNKLKDNPREPVCIKTVWGKGYLFNPFAWE 234 >UniRef50_A9ANV0 Two component transcriptional regulator, winged helix family n=72 Tax=Proteobacteria RepID=A9ANV0_BURM1 Length = 262 Score = 207 bits (528), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 107/237 (45%), Positives = 149/237 (62%), Gaps = 7/237 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDD + +LIA YL K+D +V GD A IL PDLV+LD+ LPGKDG I Sbjct: 32 ILLVEDDVRLSTLIAGYLRKNDYEVDTVLHGDAAVPAILSTRPDLVILDVNLPGKDGFEI 91 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CRD R + G I+++T+ D + +L LE+GA DY+ K P +LLAR++ LR+ Sbjct: 92 CRDARQHYDGVIIMVTARDEPFDELLGLEIGADDYVHKPVEPRILLARIKAQLRRAPARV 151 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLAN-TEISLSTADFELLWELATHAGQIMD 182 Q T FG +ID +R V L + + L++A+F+LLW L AG+++ Sbjct: 152 AEGAPQPERYT------FGKFSIDRTDRSVVLPDGSTPDLTSAEFDLLWVLVCRAGEVVS 205 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 RD L+ LRGV +DGLDR++D IS+LR+KL D+A+ P RIKT+R+KGY F+ HAWE Sbjct: 206 RDDLMLQLRGVEFDGLDRTIDGRISKLRRKLRDDASNPQRIKTIRSKGYQFSKHAWE 262 >UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromonadales RepID=Q47ZA2_COLP3 Length = 238 Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 102/238 (42%), Positives = 151/238 (63%), Gaps = 8/238 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 + I+ VEDD ++ L+ +L V E RGD + + +PDL++LD+MLPGKDG Sbjct: 8 VKKILLVEDDRQLSDLVTDFLTSEGFHVKQEFRGDTVAKRVKLFSPDLIILDVMLPGKDG 67 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CRDLR +++GP+++LT+ +D + +L LE+GA DY++K P VLLAR+ LR+ + Sbjct: 68 FGVCRDLRPEFNGPVLMLTAKSTDFDQVLGLEIGADDYVIKPVEPRVLLARVNALLRRGD 127 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 ++ E + G L I+ +R VTL + + L++ +F+LLW LA AG++ Sbjct: 128 LPNQSEEKGEITC--------GGLYINKASRKVTLQDENVDLTSQEFDLLWLLAGKAGEV 179 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 +RD + K + G YDGLDRSVDV ISRLRKKL D+ P+RIKT+ +GYLF P AW Sbjct: 180 QNRDYIYKAVIGREYDGLDRSVDVRISRLRKKLHDSTDTPFRIKTIWGQGYLFVPDAW 237 >UniRef50_Q2S9I1 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=10 Tax=Gammaproteobacteria RepID=Q2S9I1_HAHCH Length = 252 Score = 197 bits (501), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 110/228 (48%), Positives = 146/228 (64%), Gaps = 1/228 (0%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ VEDD E+ SLI YL K+ QV V G A IL + P LV+LD+MLPG GM + Sbjct: 14 LLLVEDDQELASLIQDYLTKNGFQVAVVANGLDAVREILTQRPALVILDVMLPGLSGMDV 73 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR R ++G I++LT+LD DM+ +L LE+GA DYI+K P +LL+R+R LR+ E Sbjct: 74 CRQARLDYNGFILMLTALDEDMDQMLGLELGADDYIVKPVQPRLLLSRIRALLRRLEHTG 133 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 +G+ T + + G LTID NRVV L + L+TA+FELL LA G+++DR Sbjct: 134 RGEGVAAT-IQDSSVISAGALTIDLRNRVVRLGARSVELTTAEFELLLLLARSLGEVVDR 192 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 D +++ LRG YDGLDRS+D ISRLRKKL D A IKT+R KGY Sbjct: 193 DFIIQELRGFDYDGLDRSIDRRISRLRKKLQDGGAGQDIIKTIRGKGY 240 >UniRef50_D0Z2F0 DNA-binding response regulator n=1 Tax=Photobacterium damselae subsp. damselae CIP 102761 RepID=D0Z2F0_LISDA Length = 249 Score = 197 bits (500), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 97/236 (41%), Positives = 147/236 (62%), Gaps = 7/236 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 +++ +EDD ++ ++A Y V G+ A E I NPD+VLLD+MLPG DG+T Sbjct: 20 SLLIIEDDLKLQQMLADYFLTQGFTVQTHSDGNGAIELIESSNPDIVLLDLMLPGNDGLT 79 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 ICR +R K+ G +++LT+ + D +H+ ALE+GA DY++K P VLLAR+R+ LR+ + Sbjct: 80 ICRQVRGKYQGKLMMLTASNDDFDHVAALEIGADDYVVKPIKPRVLLARMRMLLRRAK-- 137 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 +Q + L +G LT+ ++ + +I ++ ++F+LLW LA+ + Sbjct: 138 -----IQPDTPVNLNVLTYGNLTLHKNRKLCEFSGQKICMTDSEFDLLWLLASSPDAPLS 192 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 RD L K LRG+ YDG+DR++D I LRKKLLD+++ P RI TVR KGYLF P W Sbjct: 193 RDFLTKELRGIEYDGIDRTIDNKIVSLRKKLLDDSSTPQRIITVRGKGYLFVPDTW 248 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 196 bits (497), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 109/240 (45%), Positives = 150/240 (62%), Gaps = 9/240 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I VEDD+ + LIA+YL ++D V V RGD + R+ PDLV+LD+MLPG DG Sbjct: 47 MPNIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDG 106 Query: 61 MTICRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + +CR LR + PI++LT+ D + +L LEMGA DY+ K P VLLAR+R LR++ Sbjct: 107 LQLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRS 166 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + E L + G L ID R V+ E+ LS+ ++ LL LA +AG+ Sbjct: 167 S-------VNEPRLD-NDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGE 218 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 +M+RD +L+ LRG+ ++G DRSVDVAIS+LR+K DNA E +IKTV KGYLF+ WE Sbjct: 219 VMNRDRILQQLRGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRVEWE 278 >UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=9 Tax=Gammaproteobacteria RepID=Q4ZQ24_PSEU2 Length = 247 Score = 195 bits (495), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 101/234 (43%), Positives = 144/234 (61%), Gaps = 7/234 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ VEDD + L + YL H ++V++E G A I+ E PDLV+LD+MLPG+DG +I Sbjct: 10 VLIVEDDQRLAELTSDYLQNHGLRVSIEGDGALAAARIIAEQPDLVILDLMLPGEDGFSI 69 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR +R ++ GPI++LT+ D +HI L+ GA D++ K P VLLAR++ LR++E Sbjct: 70 CRSVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRRSEAP- 128 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + + L FG L +D R L I L+ A+F+LLW L +AG+ + R Sbjct: 129 ------QVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLSR 182 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + + LRGV YDG DRS+DV ISR+R K+ D+ P IKTVR+KGYLF P A Sbjct: 183 EEIFTALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEA 236 >UniRef50_A4CEI9 Transcriptional regulatory protein RstA n=3 Tax=Gammaproteobacteria RepID=A4CEI9_9GAMM Length = 245 Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 98/235 (41%), Positives = 143/235 (60%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDD + I YL QVTV+ RGD A + I +NPDLV+LD MLPG DG+ + Sbjct: 11 ILLVEDDISLADWIKEYLEMKHYQVTVQERGDLAVQIIQEQNPDLVILDGMLPGLDGIDV 70 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 + +R ++ I+++T+ D +++ +L LEMGA DY+ K VL ++R HL + Sbjct: 71 LKAVRPAFANTIIMVTARDEELDEVLGLEMGADDYLTKPLRANVLSTKIRKHLERQTIMK 130 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 ++ ++ + +G +ID R V L N + +S+ +F+LLW LA AG + R Sbjct: 131 RSQDIESEVGRSSDSFQYGDFSIDKQARSVELNNKIVDISSNEFDLLWLLAERAGNTVTR 190 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 D L++ LRG YDG DR+VD+ +S+LRKKL DN ++PYRIKTV KGYL AW Sbjct: 191 DELIQALRGFDYDGFDRTVDLIVSKLRKKLNDNPSKPYRIKTVWGKGYLLVKSAW 245 >UniRef50_Q3JG93 Response regulator protein n=61 Tax=Proteobacteria RepID=Q3JG93_BURP1 Length = 288 Score = 189 bits (479), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 98/236 (41%), Positives = 141/236 (59%), Gaps = 6/236 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ +EDD + LI YL ++ VTV RGD A + P LV+LD+MLP DGM + Sbjct: 58 VLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGMEV 117 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR +RA + P+++LT+ + + LE GA DY+ K P VL+AR R LR+ + Sbjct: 118 CRRIRAFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQPGA 177 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + +L FG L I P NR VT + L TA+F LL LA AG ++ R Sbjct: 178 SVEAPASETLV------FGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVLSR 231 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 D +LK LRG+ +DG+DRSVD IS+LR++ D ++EP++IKT+ +GYLF+P AW+ Sbjct: 232 DDILKQLRGIEFDGIDRSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWD 287 >UniRef50_B7VQ15 DNA-binding response regulator n=8 Tax=Vibrionales RepID=B7VQ15_VIBSL Length = 234 Score = 186 bits (472), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 98/235 (41%), Positives = 145/235 (61%), Gaps = 7/235 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ VEDD ++ ++ Y D +VT G A +TIL + PD+VLLD+MLP DG+TI Sbjct: 6 MIIVEDDLKLQQMLKDYFVAQDFEVTALDDGSDAVQTILDDQPDIVLLDLMLPVTDGLTI 65 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR R + G I++LT+ D D +H+ LE GA DY+ K P VLLAR+R LR+ E T Sbjct: 66 CRQTRTLFKGKILMLTASDDDFDHVAGLETGADDYVTKPIKPRVLLARVRSLLRRQE--T 123 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 T + ++S +L FG LT+ + L++ +SL+ ++F+LLW LA++ + R Sbjct: 124 NTPLVDDSS-----SLQFGQLTLKNTYKKCELSDVVLSLTDSEFDLLWLLASNPDTPLSR 178 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 D L + LRG+ YDG+DR++D + RLRK L D+ +I+T+R KGYLF AW Sbjct: 179 DYLTQTLRGIEYDGIDRTIDNKVVRLRKILGDDKTPAEKIQTIRGKGYLFVSTAW 233 >UniRef50_A9KX94 Two component transcriptional regulator, winged helix family n=7 Tax=Gammaproteobacteria RepID=A9KX94_SHEB9 Length = 235 Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 95/235 (40%), Positives = 147/235 (62%), Gaps = 4/235 (1%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDD + I YL QV + G A IL P LV+LDIMLP KDG+++ Sbjct: 5 ILIVEDDLPLAESIQEYLNYEGYQVEIISNGVLAVSRILEWQPALVILDIMLPQKDGLSV 64 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR++R +++G I++ T+ +++ I+ LE+GA DY+LK P +LLA+++ LR++ A Sbjct: 65 CREVRPQYNGYILMFTARGEEIDQIVGLEIGADDYLLKPVKPRMLLAKIKAFLRRDRLAE 124 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 Q+ S + + FG L I+ R VTLA+ I L+ +++LL LA +AG I+ R Sbjct: 125 SIAENQQVS----EYISFGQLAINTQKRSVTLADVAIKLTDGEYDLLITLAKNAGNILSR 180 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 + +++ ++G YDG++R VD I +LRKKL D+A P++IKT+R+KGYLF W Sbjct: 181 NDIVEQVKGYYYDGIERGVDNHICQLRKKLGDDARNPFKIKTIRSKGYLFVSSGW 235 >UniRef50_A8FS20 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Shewanella sediminis HAW-EB3 RepID=A8FS20_SHESH Length = 232 Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 96/234 (41%), Positives = 150/234 (64%), Gaps = 10/234 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 +++ ++DD E+ L+ YL ++D +V+V G A + IL +NP +V+LD+MLP DG+T Sbjct: 6 SVLLIDDDIELCELVRDYLIQNDYRVSVLNDGLNAAKEILSQNPHIVILDLMLPHVDGLT 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 IC+ +R + G I++LT+LD D++ + LE+GA DY+ K P VLLA +R LR E+ Sbjct: 66 ICKQVREDYHGSIIMLTALDDDIDEVTGLEVGADDYLAKPVKPRVLLAHIRAQLRHLEKH 125 Query: 123 TLTKGLQETSLTPYKALHFGT--LTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 K QE +++ FG ++P NR +++ + I L+ A++++L +LA H G+I Sbjct: 126 ---KKRQEM-----ESIQFGNQCFVLNPANRTLSVDHQPIELTGAEYDVLLQLAIHCGEI 177 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + RDAL K + YDG++RS+D+ ISRLR KL +A I+TVRNKGYL A Sbjct: 178 VSRDALHKTIFNFEYDGIERSIDLRISRLRNKLNQHAESGNIIQTVRNKGYLLA 231 >UniRef50_A1S1W0 Response regulator receiver protein n=1 Tax=Shewanella amazonensis SB2B RepID=A1S1W0_SHEAM Length = 237 Score = 177 bits (450), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 144/235 (61%), Gaps = 3/235 (1%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+++EDD ++ L+ +L H +VT P + A E + + DL+LLDI LP +DG+++ Sbjct: 5 ILYIEDDHKLAGLVKNFLQSHGFEVTHLPSAEGALEQLYYGSFDLLLLDIGLPTEDGISL 64 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR +R +++G I+ +T+ S ++ + L GA DY+ K P +LLAR++ L++ E Sbjct: 65 CRQIRDRFTGQILFMTARRSAVDEVEGLMAGADDYLTKPVAPEILLARIQTRLKRREPQE 124 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + ++ + P +HFG L I R + L+TA+F++L +LA HAGQI+ R Sbjct: 125 M---VEVDTAKPQSEMHFGRLCIRLAARQAFWDEESLRLTTAEFDILAQLAKHAGQIVCR 181 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 + L K G YDGL+R++D ISRLR+KL DN +P++IKT+ KGYLF P W Sbjct: 182 EDLFKYTTGAPYDGLNRTMDNRISRLRRKLGDNMDDPFKIKTIWGKGYLFVPDIW 236 >UniRef50_Q2S740 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S740_HAHCH Length = 242 Score = 176 bits (447), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 92/238 (38%), Positives = 142/238 (59%), Gaps = 9/238 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+DD + LI +L ++ V V G+ A + R P L++LD+MLPG DG+++ Sbjct: 5 LLLVDDDKGLTRLIKQFLEQNGYPVKVIHDGESAVSWLERNQPQLIILDVMLPGMDGLSV 64 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR++R + GPI++LTSLD D++ + LE+GA DY+ K VLLA +R LR+ E + Sbjct: 65 CREVRKHYKGPIIMLTSLDDDIDEVAGLEVGADDYLAKPVKSRVLLAHIRAQLRRVETYS 124 Query: 124 LTK----GLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 QE + + G L I+ R V A I +TA+F LL+ LA AG Sbjct: 125 ANDSDAPATQENGV-----IRIGELVINSNARTVVKAGVAIDFTTAEFNLLYYLARQAGS 179 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 ++ RD + + + + YDGLDRS+D+ +SR+RK+L D+ +P IKT+R +GYLF +A Sbjct: 180 VISRDLVYREIFNLEYDGLDRSIDLRVSRIRKRLGDDPKQPRLIKTIRGEGYLFVDNA 237 >UniRef50_Q9APH8 Possible transcriptional regulatory protein n=2 Tax=Legionella RepID=Q9APH8_LEGLO Length = 230 Score = 175 bits (444), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 91/237 (38%), Positives = 142/237 (59%), Gaps = 11/237 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 +I+ VED+ ++ + + L + V++E RGD++ I+RE P LV+LDIMLPG +G Sbjct: 5 SILLVEDNVKLANYLKESLQEAGYDVSIEKRGDRSVYRIIREQPCLVILDIMLPGMNGDQ 64 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 IC +R ++ G I++LT+++ + + +L +GA DY+ K VL AR+ LR+ Sbjct: 65 ICHTIRDEYLGKILMLTAINDIESEVSSLNLGADDYLTKPVADEVLKARIEALLRR---- 120 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + HFG +I+ + V L + EIS+ST+DFE+L L + +++ Sbjct: 121 -------PNLVNNQNQFHFGNFSINFSTKSVQLFDEEISISTSDFEMLALLVKNHDRLLS 173 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 RD+++ L G YDG+DR +D+ ISRLRK L DN +PYRIKT+ KGY+F AWE Sbjct: 174 RDSIMYALSGHEYDGVDRGIDLKISRLRKALNDNNKKPYRIKTIHKKGYIFVSAAWE 230 >UniRef50_A6VT30 Two component transcriptional regulator, winged helix family n=26 Tax=Gammaproteobacteria RepID=A6VT30_MARMS Length = 245 Score = 175 bits (443), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 99/239 (41%), Positives = 140/239 (58%), Gaps = 2/239 (0%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 TI+ +EDD ++ LI +YL + V G + E P L++LD+MLP DG Sbjct: 6 FRTILLIEDDLKLAELITSYLGQQGFVVHHADDGQKGLELAEIIQPQLIILDLMLPNLDG 65 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +T+CR L+ + G +++LT+ DM+ + ALEMGA D++ K P VLLAR+R LR++E Sbjct: 66 LTVCRRLQTWYQGALLILTASGDDMDQVAALEMGADDFVNKPIHPRVLLARVRALLRRDE 125 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + L S L F +L I+ R V LA I L+ +FELLW LA++ + Sbjct: 126 KR--ANPLSPASTINNDQLIFDSLKINIGRRQVELAGELIKLTETEFELLWLLASNPEKT 183 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 + RD + ++LRG+ YDGLDRS+D I LRKKL D+ P RI TVR KGYLF W+ Sbjct: 184 VSRDEISQSLRGIEYDGLDRSIDNKIVSLRKKLGDSNGLPRRIITVRGKGYLFITDQWQ 242 >UniRef50_A3QF24 Two component transcriptional regulator, winged helix family n=4 Tax=Gammaproteobacteria RepID=A3QF24_SHELP Length = 246 Score = 172 bits (437), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 91/239 (38%), Positives = 147/239 (61%), Gaps = 7/239 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N I+ V+DDA++ +L+A +L + + +E G +A E I+ E P LV+LD+MLP DG+ Sbjct: 5 NWILIVDDDADLANLVADFLEMNGYKTEIEHNGAKAVERIIAEQPMLVILDVMLPDMDGL 64 Query: 62 TICRDLR-------AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRL 114 +ICR +R ++GPI++LT+L++D++ + LE GA DY+ K VLLAR+R Sbjct: 65 SICRAVRHGHPGIEGSYNGPILMLTALNNDIDEVAGLETGADDYLAKPVRSRVLLARVRA 124 Query: 115 HLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELA 174 LR+ + +T+ L + + F L+ID + + +I L+TA+FELLW LA Sbjct: 125 LLRRKPEPPVTEKLSKLHSNNESLIEFDGLSIDKKYQRIQQHGQDIELTTAEFELLWLLA 184 Query: 175 THAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + G+I DRD++ + Y+ R++D+ +SR+R+KL D+ + RIKT+ KGYLF Sbjct: 185 SRPGEICDRDSISDYFSDLGYESSHRTIDLRVSRIRRKLGDDPSHATRIKTIHGKGYLF 243 >UniRef50_C9NPC4 Putative DNA-binding response regulator n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NPC4_9VIBR Length = 238 Score = 169 bits (428), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 96/236 (40%), Positives = 133/236 (56%), Gaps = 4/236 (1%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VED + I +L H V V G +A I + PD+VLLDI+LPG G + Sbjct: 5 ILVVEDHIKYAQQITRFLMTHHYHVDVINNGKEALSVINHQQPDIVLLDIVLPGMSGFEV 64 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ-NEQA 122 CR +R ++G I++LT D D + I LE+GA Y++K P VLLA +RL RQ Q Sbjct: 65 CRSIRPTFTGKILVLTGCDEDFDQIAGLELGADGYLVKPIKPQVLLAHIRLLERQLGAQK 124 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T L S + L LTI+ + V+ NT SL A++E+L LA HA Q + Sbjct: 125 TTQSYL---SFKHHNVLTVNQLTINLDAKSVSYRNTLHSLRPAEYEVLVVLAKHADQTVT 181 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 R+ +++ LRG+ Y+GLDRSVDV ++ LRK+ D EP +I T RN+GY AW Sbjct: 182 REHIIQALRGIDYNGLDRSVDVKVAALRKQFRDQGNEPEKIVTHRNRGYRLITSAW 237 >UniRef50_A6FAL7 DNA-binding response regulator n=1 Tax=Moritella sp. PE36 RepID=A6FAL7_9GAMM Length = 232 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/234 (41%), Positives = 144/234 (61%), Gaps = 11/234 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDD E+ L+ +L QV++ G I+R PDLV+LDIM+PG DG+ + Sbjct: 9 ILIVEDDLEICRLLDMFLRSKGYQVSLSNNGIDGLSDIVRLQPDLVVLDIMMPGLDGIEV 68 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C+ R +SGPI++LT+ +++ I AL+ GA Y+ K P +LL+ + LR+ + Sbjct: 69 CKQSREHYSGPIIMLTACSEEISEIAALDTGADGYLHKPLRPHILLSHIEAFLRRENR-- 126 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 TK ++L H G+LTID + R+V + EI L+ A++E+L LA AG I+ R Sbjct: 127 -TKN-NNSALN-----HTGSLTIDTLKRLVMRDSEEIILTGAEYEMLEYLAKQAGTIVSR 179 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYR-IKTVRNKGYLFAPH 236 D + L+GV +DGLDR++D+ +S LRKK+ D+ A PY+ IKT+R KGYLF Sbjct: 180 DECYRALKGVEFDGLDRALDMRLSSLRKKIKDDVA-PYQIIKTIRCKGYLFVKQ 232 >UniRef50_Q7UJC9 Probable two-component response regulator n=1 Tax=Rhodopirellula baltica RepID=Q7UJC9_RHOBA Length = 237 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 146/233 (62%), Gaps = 10/233 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 + ++ VEDD + ++++ +L ++ V +E G A + I+ + D ++LDI LP +G+ Sbjct: 14 DRLLLVEDDTHLAAMVSDFLHENGFHVEIENDGKLAAQRIVHDRFDAIVLDIGLPSMNGI 73 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +R ++SGPI++LT+ +++ ++ALE+GA D++ K P LLARL+ HLR++ Sbjct: 74 DVCRSVRNQFSGPIIVLTARGEEIDEVVALEVGADDFMSKPVRPRALLARLKNHLRKS-- 131 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + LT + G L + P R VT+A + ++TA+F+L+ LA AG ++ Sbjct: 132 --------DAQLTDEDRIIVGDLVVTPARRQVTIAGDPVDMTTAEFDLIEYLALRAGSVV 183 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R + +L G+ YDGLDRS+D+ +SR+R+KL D+ +P RIK+VR GYL A Sbjct: 184 ARKDIYVDLLGLPYDGLDRSIDLRVSRVRRKLGDDPNQPTRIKSVRGVGYLMA 236 >UniRef50_Q488T3 DNA-binding response regulator n=4 Tax=Alteromonadales RepID=Q488T3_COLP3 Length = 246 Score = 163 bits (412), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 92/242 (38%), Positives = 132/242 (54%), Gaps = 12/242 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDD + ++ YL + VT RGD + I + D+VLLD+MLPG +G Sbjct: 1 MYNILLVEDDISLADWVSEYLTEQGFNVTHVARGDLVIDVIKKNTTDIVLLDVMLPGLNG 60 Query: 61 MTICRDLRAKWSG---PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 + +CR +R PI++LT+ + + ++ LE GA DY++K P LLAR+ L Sbjct: 61 IEVCRLIRQHEQSKQVPIIMLTARADEFDEVIGLEAGADDYVIKPVRPRALLARINRQLS 120 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 N++ E L L FG LTI+ + V E+ LST+ F L LA HA Sbjct: 121 HNDKV-------EPDLNA--PLIFGELTINQEAKRVLYQGKEVELSTSLFAFLTYLAQHA 171 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 G ++DRD++ K L+ YDG DR DV +S LRK D+ +P + KT+ KGYLF A Sbjct: 172 GNVVDRDSVFKALKKREYDGQDRRFDVMLSTLRKLFNDDPQKPQKFKTIWGKGYLFVSDA 231 Query: 238 WE 239 W+ Sbjct: 232 WQ 233 >UniRef50_A6GGY5 Two component transcriptional regulator, winged helix family protein n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6GGY5_9DELT Length = 231 Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 131/234 (55%), Gaps = 13/234 (5%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ EDD + L+ + + + G + + R PDL++LD+MLPG DG Sbjct: 4 ERILIAEDDVRLAQLMREAFVRRGYEALLLHGGGEVVPAVWRLRPDLLVLDLMLPGADGF 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 I R LR +W+GPI++LT+ D D + + LE+GA DYI K VLLAR+R LR++ Sbjct: 64 EILRHLRPRWTGPILILTARDGDFDQVSGLELGADDYIAKPVATPVLLARVRALLRRSRS 123 Query: 122 ATLTKGLQETSLTPYKA-LHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 P +A L G L I P R V +SLS +++ELL LA AG++ Sbjct: 124 G------------PREAELELGELRITPSAREVRAQGRLLSLSDSEYELLVFLAARAGEV 171 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + R+ L + LRG+ YDGLDRS+D+ +S+LR +L + I+TV +GYLFA Sbjct: 172 VTREQLFRELRGIEYDGLDRSMDLRVSKLRARLREQLEGRAPIRTVHGRGYLFA 225 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 158 bits (400), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/237 (36%), Positives = 137/237 (57%), Gaps = 15/237 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGD------QAEETILRENPDLVLLDIML 55 I V+DD E+ +L+ YL KH V G+ +AE+ + DLV+LDIML Sbjct: 5 KCIYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEV-----DLVILDIML 59 Query: 56 PGKDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLH 115 PG+DG +CR LR + P+++LT+ +M+ I+ LE+GA DY+ K P LLAR++ Sbjct: 60 PGQDGFAVCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAI 119 Query: 116 LRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELAT 175 LR+ E + E + ++ F T+D ++R + + + SLS AD+ LL T Sbjct: 120 LRRMEHTEVV----EIAPVTHRFYRFAQFTLDTLSRELYFKDEKESLSGADYNLLMLFLT 175 Query: 176 HAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 H G ++ R+ + +N RG LDR +DV +SRLR++L ++A +P IKT+R +GY+ Sbjct: 176 HPGAVLTRELIAENTRGRDSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYI 232 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 157 bits (397), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 87/230 (37%), Positives = 133/230 (57%), Gaps = 12/230 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ ++DD + +L+ YL + V + + PDLV+LD+MLP DG+ + Sbjct: 18 VLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGLAV 77 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR++RA PI++LT+ + I+ LEMGA DY+ K P L+AR+ QA Sbjct: 78 CREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARI--------QAV 129 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 L +G ++ + +AL G L ++ R V LA E+ L+TA+FELL LA + G++M R Sbjct: 130 LRRGTRDDA----EALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVMSR 185 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 D +L RG+ +D DRS+D+ +SRLR+KL D+ P I+TVR GY F Sbjct: 186 DRILDGTRGIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSF 235 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 92/234 (39%), Positives = 145/234 (61%), Gaps = 7/234 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD E+ L+A+YL K+ M+ ++ G Q + + + DL++LD+MLPG+DG+T+ Sbjct: 7 ILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLTL 66 Query: 64 CRDLRA-KWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 CR+LRA KW P+++LT+ + + + I+ LEMGA DY+ K L AR+R LR+ Sbjct: 67 CRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRAR- 125 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINR-VVTLANTEISLSTADFELLWELATHAGQI 180 L LQ + P + L FG +D R ++ T ++LS A++ LL H ++ Sbjct: 126 -MLPANLQVSE--PAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQRV 182 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + RD LL +G D DRS+D+ ISRLR++L D+A EP IKT+R++GY+F+ Sbjct: 183 LTRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFS 236 >UniRef50_B8IGE5 Two component transcriptional regulator, winged helix family n=7 Tax=Proteobacteria RepID=B8IGE5_METNO Length = 246 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 144/237 (60%), Gaps = 7/237 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 ++ ++ V+DD E+ L++ YL K+ ++VTV G Q + + D+++LDIMLPG DG Sbjct: 4 VDHVLIVDDDREIRELVSGYLKKNGLRVTVAADGRQMRSFLDADRVDIIVLDIMLPGDDG 63 Query: 61 MTICRDLRA--KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 + +CR+LRA + PIVLLT+ + + I+ LEMGA DY++K LLAR++ LR+ Sbjct: 64 LVLCRELRAGKHKTTPIVLLTARSDETDRIVGLEMGADDYLVKPFAARELLARIKAVLRR 123 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINR-VVTLANTEISLSTADFELLWELATHA 177 L LQ T + + L FG +D R ++ T ++LS A++ LL H Sbjct: 124 TRM--LPPNLQVTEVA--QLLTFGAWQLDTTARHLLDATGTVVALSGAEYRLLRVFLDHP 179 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 +++ RD LL +G + DRS+D+ +SRLR++L D+A EP IKTVR++GY+FA Sbjct: 180 QRVLSRDQLLNLTQGREAELFDRSIDLLVSRLRQRLRDDAREPTYIKTVRSEGYVFA 236 >UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCY7_9BURK Length = 248 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/236 (38%), Positives = 136/236 (57%), Gaps = 13/236 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGD--QAEETILRENPDLVLLDIMLPGKDG 60 T++ V+DD + +L+ YL KH +V V G AE ++ LV+LD+MLP DG Sbjct: 13 TLLVVDDDQKTRNLLKTYLEKHQYEVRVAHDGASFNAEFERFKDELSLVILDVMLPDTDG 72 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLR-LHLRQN 119 T+CR +R++ PI++LT+ D + I+ LE+GA DYI K P LLAR++ +H R Sbjct: 73 FTLCRSVRSQSPVPIIMLTASADDTDRIVGLELGADDYIAKPYNPRELLARIKAIHRRMQ 132 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTE-ISLSTADFELLWELATHAG 178 A P + L F ++D + RV+T + + L++ DF LL A HAG Sbjct: 133 LGA---------PGAPVRFLKFAGFSMDMVERVLTDPQGQPVVLTSMDFNLLRFFAEHAG 183 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + +DR L++ RG LDRS+DV +SRLR++L D+ +P IKTVR GY+F+ Sbjct: 184 ETLDRARLMEQTRGRDLGPLDRSLDVQVSRLRQRLHDDGKQPVLIKTVRGSGYVFS 239 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 92/240 (38%), Positives = 135/240 (56%), Gaps = 9/240 (3%) Query: 1 MNT---IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPG 57 MNT I+ V+DD E+ +L+ YL KH + G + + DLV+LD+MLPG Sbjct: 1 MNTPEHILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPG 60 Query: 58 KDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 DG+T+CR LRA+ P+++LT+LD D + I+ LE+GA DY+ K P L+AR+R LR Sbjct: 61 DDGLTLCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLR 120 Query: 118 QNEQ--ATLTKGLQETSLTPYKALHFGTLTIDPINR-VVTLANTEISLSTADFELLWELA 174 + + K E + + F T+D + R +V ++LS A++ LL Sbjct: 121 RARALPENIAKAEPEAM---SRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFL 177 Query: 175 THAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + ++M RD LL +G + + DRS+DV +SRLR +L DN EP IKTVR GY A Sbjct: 178 KYPNRVMSRDQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLA 237 >UniRef50_Q3KB13 Two component Transcriptional regulator, Winged helix family n=33 Tax=Proteobacteria RepID=Q3KB13_PSEPF Length = 245 Score = 153 bits (387), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 139/237 (58%), Gaps = 7/237 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 +N I+ V+DD E+ L+ YL K+ ++ TV G Q + DL++LDIMLPG DG Sbjct: 4 INHILIVDDDREIRELVGNYLTKNGLRSTVVADGRQMRSFLEANTVDLIVLDIMLPGDDG 63 Query: 61 MTICRDLRA--KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 + +CR+LRA + PI++LT+ D + IL LEMGA DY+ K LLAR+ LR+ Sbjct: 64 LVLCRELRAGKHKAIPILMLTARDDQTDRILGLEMGADDYLTKPFAARELLARINAVLRR 123 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINR-VVTLANTEISLSTADFELLWELATHA 177 + ET + L FG +D R ++ +T ++LS A++ LL H Sbjct: 124 TRMLPPNLLISETG----RLLAFGRWRLDTTARHLLDEDDTMVALSGAEYRLLRVFLDHP 179 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 +++ RD LL +G D DRS+D+ +SRLR++LLD++ EP IKTVRN+GY+F+ Sbjct: 180 QRVLSRDQLLNLTQGRDADLFDRSIDLLVSRLRQRLLDDSREPTYIKTVRNEGYVFS 236 >UniRef50_A0L0G2 Two component transcriptional regulator, winged helix family n=5 Tax=Shewanella RepID=A0L0G2_SHESA Length = 240 Score = 152 bits (383), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 137/236 (58%), Gaps = 17/236 (7%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPD---LVLLDIMLPG 57 ++ I+ +EDD + L+ YL + ++ D AE+ ++R + D L++ D+MLPG Sbjct: 10 LSQILLIEDDQPLAELVCTYLTQEGYKLI---HLDNAEDALIRRDTDEFDLIICDVMLPG 66 Query: 58 KDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 +DG +I L A + PI+ LT+LD+ + I L +GACDY+LK P +LLAR++ +LR Sbjct: 67 QDGFSIYPQLAASYPCPIIFLTALDNHADQIRGLNLGACDYLLKPVVPPLLLARIKANLR 126 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + + ++ L+ L +DP + V L + +S +T +F LLW A HA Sbjct: 127 KQQSSSSRSKLKLHDLF-----------LDPNLQQVNLGDEALSFTTKEFSLLWIFALHA 175 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 G+++ R+ L + L G YDGLDR++D+ ISRLRK+L + I T+ KGYLF Sbjct: 176 GKVLSREFLFEQLVGREYDGLDRAIDLKISRLRKRLDELNVPGLAITTIHGKGYLF 231 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 95/239 (39%), Positives = 140/239 (58%), Gaps = 15/239 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETI-LRENP-DLVLLDIMLPGKDGM 61 I+ +EDD ++ LI+ YLA + +V P G + + + +E DL++LD+MLP DGM Sbjct: 5 ILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMDGM 64 Query: 62 TICRDLRAKWSG-----PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHL 116 +C+ +R + PIV+LT+ + +L LEMGA DYI K P LLAR+R L Sbjct: 65 QVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIRAVL 124 Query: 117 RQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATH 176 R++EQ Q SLT FG L++ P + VT+ + + L+T F+LL ATH Sbjct: 125 RRHEQPNQADS-QSDSLT------FGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFATH 177 Query: 177 AGQIMDRDALLKNL-RGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 AG++++R+ L + + S D +DR++DV ISRLR + DN +P RI TVR GY FA Sbjct: 178 AGKVLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQFA 236 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 151 bits (381), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 132/233 (56%), Gaps = 5/233 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 +V V+D+ + ++ L K V G+ A + I E PD+VLLDIMLPG+DGM + Sbjct: 5 VVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGMEV 64 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR++R K+ PI++LT+ DS+++ +L LE+GA DY+ K L+AR++ +LR++ Sbjct: 65 CREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRH---- 120 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 ++ Q+T + + I P + +I L+ +FEL L+ H GQ+M R Sbjct: 121 YSQPAQDTGNVT-NEITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVMTR 179 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 + LL+ + G Y G R+VDV I RLR+K+ D+ + P I T R GY H Sbjct: 180 EHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >UniRef50_Q47ZK7 DNA-binding response regulator n=2 Tax=Alteromonadales RepID=Q47ZK7_COLP3 Length = 237 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 92/239 (38%), Positives = 140/239 (58%), Gaps = 26/239 (10%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ +EDD E+ L YL + T+ G A I + +PDL+LLD+MLPG DG + Sbjct: 15 ILIIEDDKEIARLTEIYLQSTGYETTIIADGSLAIAMIKKLSPDLILLDLMLPGVDGFEL 74 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ----N 119 C+ R ++GPI++LT+++ D++ + L++GA DY+ K P ++ AR+ LR+ N Sbjct: 75 CKQAREFYNGPIIVLTAMEDDLSEVSLLKLGADDYLRKPAKPHIMSARIEALLRRAKVNN 134 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINR---VVTLANTEISLSTADFELLWELATH 176 E+ T QE P K L INR VTL N + L+ ++F++L LA Sbjct: 135 EKVT-----QE---LPNKLL---------INRDTLSVTLNNALVDLTNSEFDMLVLLADK 177 Query: 177 AGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYR-IKTVRNKGYLFA 234 +GQ + R+ + +LRG+ +D +RS+D+ IS LRKKL D + PY+ IKT+RNKGYL Sbjct: 178 SGQTVSREECIHSLRGIDFDVTNRSIDMRISALRKKLNDEKS-PYKLIKTIRNKGYLLV 235 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 148 bits (373), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 139/234 (59%), Gaps = 7/234 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDD E+ L+A YL ++++V+V + + + DL++LD+MLPG+DG++I Sbjct: 20 ILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGEDGLSI 79 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR LRA+ + PI++LT+ +++ I+ LE+GA DY+ K P LLAR+R LR+ Sbjct: 80 CRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRRG---- 135 Query: 124 LTKGLQETSLTPYKALHFGTLTIDP-INRVVTLANTEISLSTADFELLWELATHAGQIMD 182 G + L F +D + +++ +++L+ A+F+LL + G+++ Sbjct: 136 --SGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRVLS 193 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 RD LL +G + +RS+DV +SR+R+K+ ++ P IKT+R+ GY+F P Sbjct: 194 RDQLLDLTQGRAPGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVFTPE 247 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 147 bits (372), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 133/236 (56%), Gaps = 5/236 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ V+DD ++ SL+ + KH VT+ G + +E DLV+LD+ML G+DG Sbjct: 1 MPHLLLVDDDEDILSLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGEDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++C+ +RA P+++LT++ + ++ LE+GA DY+ K LLAR++ LR+ Sbjct: 61 FSLCQKMRAVSRVPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRTA 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLA-NTEISLSTADFELLWELATHAGQ 179 + T ET L F +D R + N I LS +F+LL A H+ + Sbjct: 121 ELEATPTPSETR----PMLCFAGWRLDVARRELRSGDNALILLSGGEFDLLLAFAEHSQR 176 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 ++ RD LL RG+S+ DRS+DV +SRLR KL D+ +P I+TVRN GY+F P Sbjct: 177 VLTRDQLLDLARGLSHAAFDRSIDVQVSRLRHKLEDDPKKPSVIRTVRNGGYIFTP 232 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 136/234 (58%), Gaps = 6/234 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 +I+ VEDD E SLIA YL + V+ G + + DL+++D+MLP +DG++ Sbjct: 16 SILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGLS 75 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR +RA+ PI++LT+ D++ I+ LEMGA DY+ K P LLAR+ LR+ QA Sbjct: 76 LCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRR--QA 133 Query: 123 TLTKGLQETSLTPYKALHFGTLTID-PINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + T + F +D + + A ++L++A+F+LL AG+++ Sbjct: 134 SALNASENVGATCF---SFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRVL 190 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R+ LL+ +G + DRS+DV +SR+R+K+ + A+ IKTVR+ GY+F P Sbjct: 191 SREVLLELTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMFTP 244 >UniRef50_B8JG70 Two component transcriptional regulator, winged helix family n=2 Tax=Cystobacterineae RepID=B8JG70_ANAD2 Length = 238 Score = 145 bits (367), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 87/231 (37%), Positives = 129/231 (55%), Gaps = 9/231 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++FVEDD + +L YL H VT G L+ D+V+LD+MLP K G+ + Sbjct: 11 VLFVEDDERLAALTTRYLESHGHAVTWVADGQLGLAEALKGQHDVVILDLMLPRKSGLEV 70 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR+LRA+ PI++LT+L + + +L LE GA DY+ K LLARLR +R+ + + Sbjct: 71 CRELRARLPVPIIMLTALGEEADRVLGLETGADDYLAKPFSSRELLARLRALVRRG-RGS 129 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 L P + + G L + P + + A + L+TA+F LL LA AG+++ R Sbjct: 130 LG--------PPREVIRVGDLELSPRDWSASRAGRPLRLTTAEFVLLRVLAERAGRVLTR 181 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + LL +G + + DRS+D ISRLR KL D+ P +KTVR GY+ A Sbjct: 182 EQLLDLTKGSADEAFDRSIDAHISRLRHKLGDDPRRPALLKTVRGAGYVLA 232 >UniRef50_Q212W6 Two component transcriptional regulator, winged helix family n=17 Tax=Alphaproteobacteria RepID=Q212W6_RHOPB Length = 270 Score = 145 bits (365), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 93/232 (40%), Positives = 129/232 (55%), Gaps = 11/232 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD E+ L+A Y+ +V + + + + E DLV+LD+MLP G+ Sbjct: 37 ILVVDDDPEIRKLLARYVEGQAFRVLLAASCAELRQRLATEQIDLVVLDVMLPDGSGLDA 96 Query: 64 CRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 CRDLRAK + PI+LLT+L D++ IL LEMGA DY+ K P L+AR+R LR+ + Sbjct: 97 CRDLRAKRNPIPIILLTALKEDVDRILGLEMGADDYLSKPFNPRELVARIRAVLRRRSET 156 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDP-INRVVTLANTEISLSTADFELLWELATHAGQIM 181 G +A F DP + VV T I L+ A+F+LL G+++ Sbjct: 157 PAPVGAS-------RAYRFEGFVADPQVRSVVDPTGTAIELTGAEFDLLQVFLDRPGRVL 209 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD LL RG S D DRS+DV ISR+R+K LD + +KTVRN GY F Sbjct: 210 SRDQLLDFTRGRS-DTFDRSIDVLISRVRRK-LDPSGTARLLKTVRNGGYQF 259 >UniRef50_Q0K0A7 Response regulator, OmpR-family n=9 Tax=Bacteria RepID=Q0K0A7_RALEH Length = 247 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/234 (36%), Positives = 139/234 (59%), Gaps = 7/234 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD E+ L++ YL K+ ++VTV P G + + DL++LD+M+PG DG+ + Sbjct: 8 ILIVDDDREIRELVSTYLTKNGLRVTVVPDGRHMRSFLDVNSVDLIVLDVMMPGDDGLVL 67 Query: 64 CRDLRA--KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 CR+LRA + P+++LT+ + + I+ LEMGA DY+ K LLAR++ LR+ Sbjct: 68 CRELRAGKHKATPVLMLTARSDETDRIIGLEMGADDYLAKPFAARELLARIKAVLRRTR- 126 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINR-VVTLANTEISLSTADFELLWELATHAGQI 180 L LQ T + L FG +D R ++ ++LS A++ LL H ++ Sbjct: 127 -MLPPNLQITEAG--QLLAFGDWQLDTTARHLIDQDGVIVALSGAEYRLLRVFVDHPQRV 183 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++RD LL +G + +RS+D+ +SRLR+ L D+A EP IKTVR++GY+F+ Sbjct: 184 LNRDQLLSLTQGREAEMFERSIDLLVSRLRQHLRDDAREPRYIKTVRSEGYVFS 237 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 137/235 (58%), Gaps = 17/235 (7%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I VED+ ++ L+ YL + D V RGD+ + PDL+LLD+MLPG DG+ Sbjct: 11 KNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGADGV 70 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 T+CR++R + PI+++T+ +++ +L LE+GA DY+ K P ++AR++ Sbjct: 71 TLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVK-------- 122 Query: 122 ATLTKGLQETSLTPYK-ALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 A L +G +E P++ A+H G L + P +T+A ++ ++ ++F LL H G++ Sbjct: 123 AVLRRGGEE----PHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKV 178 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEP--YRIKTVRNKGYLF 233 RD L+ ++G +Y+G DR++D I LRKKL+ AA+P I++V GY F Sbjct: 179 FSRDELIAKIQGRTYEGYDRNIDWHIKNLRKKLI--AAQPGLEPIESVYGVGYKF 231 >UniRef50_A0LCI2 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A0LCI2_MAGSM Length = 231 Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 88/234 (37%), Positives = 135/234 (57%), Gaps = 9/234 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 MNTI+ V+DD ++ +++A YL + + G +A L+ + ++LD+MLPG +G Sbjct: 1 MNTILLVDDDKQLCAMLAEYLYEEGFSCDLCHSGTEALNRALQSPYEALVLDVMLPGING 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + R LR + P+++LT+ + + I+ LE+GA DY+ K P VL ARLR LR+ Sbjct: 61 FDLLRKLRQQTEVPVIMLTARGEETDSIVGLEIGADDYLSKPCNPRVLAARLRAVLRR-- 118 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T G + TS + L+ G LT+ P+ R V L EI L++A+F +L +L AGQ+ Sbjct: 119 ----TGGERATS---SEQLNQGALTLYPMARKVMLGAVEIELTSAEFNILEQLLREAGQV 171 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 +D++ L + G + DRSVD+ IS LRKKL RI T+R GYL+A Sbjct: 172 VDKERLSQKGLGRKWMPYDRSVDMHISSLRKKLAATGDSSPRIHTLRGSGYLYA 225 >UniRef50_A1S945 Response regulator receiver protein n=1 Tax=Shewanella amazonensis SB2B RepID=A1S945_SHEAM Length = 233 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 123/233 (52%), Gaps = 10/233 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N ++ +EDD ++ + +L K +V GD E I DL+L D+MLPG +G Sbjct: 5 NQLLLIEDDYQLARSVKRFLTKEGFEVHHFVNGDDLAELIASNQFDLILCDVMLPGTNGF 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 I + LR ++GP + +T+L + + +GA DYI K PP +L+AR++ +L++++ Sbjct: 65 EIAKSLRQSFNGPFIFMTALSDVEDQLQGFNLGADDYICKPVPPPLLVARIKANLQRHKP 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 T + +H+G L ID R V + + LS +F+LLW L H + + Sbjct: 125 QVKTT----------EKIHYGNLEIDKQRRTVLVGGGLLPLSRYEFDLLWILLEHREEQV 174 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ L G Y+G+DR+VD ISRLRKKL N RI T +GY+ + Sbjct: 175 SREYLFTKTVGREYNGIDRTVDGRISRLRKKLETNKKVRCRIYTSWGQGYMLS 227 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 132/232 (56%), Gaps = 7/232 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+DD ++ L+ +L + M+V++ G++ + + R DL++LD+MLPGK G+ I Sbjct: 83 VLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKSGIEI 142 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C+D+R PI++LT++ + IL LE+GA DY+ K P LLAR+R LR+ E Sbjct: 143 CQDIRRHSRVPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRRLENN- 201 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTL-ANTEISLSTADFELLWELATHAGQIMD 182 + S + F T+D R +T ++ + L+TA+F LL + I+ Sbjct: 202 -----RAPSRPVTHSYRFAGWTLDCARRRLTSPSDVRVELTTAEFNLLEAFVKSSQHILS 256 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 RD L++ + G DRSVD+ ISRLR+KL D++ P I T+RN GY F Sbjct: 257 RDQLMEMAGNQAVYGYDRSVDILISRLRRKLNDDSRSPKLILTIRNGGYQFG 308 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 143 bits (361), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 135/242 (55%), Gaps = 18/242 (7%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENP-DLVLLDIMLPGKD 59 M ++ VEDD V ++ L++ ++ P G+ A E + P DLVLLD+MLPG D Sbjct: 1 MARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMD 60 Query: 60 GMTICRDLRAKWSG----PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLH 115 G+++CR+LR S P+V+LT+ D + + ++ LE+GA DYI K P L +R+R Sbjct: 61 GISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQ 120 Query: 116 LRQ---NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWE 172 LR+ N QA+ + + L F L ID + R VT ++ L+ +FE+L Sbjct: 121 LRRQRMNAQASPEQ----------RKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLAL 170 Query: 173 LATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 LA++ G++ R+ ++ +L G + G RS DV I LR+K+ + P I+TVR GY Sbjct: 171 LASNPGRVYSREQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYR 230 Query: 233 FA 234 FA Sbjct: 231 FA 232 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 85/232 (36%), Positives = 134/232 (57%), Gaps = 8/232 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDD + ++ + + + G + ++R+ DL++LD MLPG+DG +I Sbjct: 15 ILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGEDGFSI 74 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR LRA S PI++LT+L D++ IL LE+GA DY+ K LLAR++ LR+ A Sbjct: 75 CRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRASYAH 134 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLAN-TEISLSTADFELLWELATHAGQIMD 182 QE +L P + F IDP +R + A+ ++S++TA+F++L + +++ Sbjct: 135 ----HQEEALGP---MMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVLT 187 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ LL S ++RS+D ISR+R+K+ N +P IKTVR GYLFA Sbjct: 188 REQLLSMTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLFA 239 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 143 bits (360), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 84/237 (35%), Positives = 133/237 (56%), Gaps = 11/237 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETI-LRENP--DLVLLDIMLPGKDG 60 I+ V+DD + +L+ YL + V V G AE I L +P DL++LDIMLPG+DG Sbjct: 17 ILVVDDDPGIQTLLGRYLREQGFDVRVV--GSGAEMDIALAADPRVDLLVLDIMLPGEDG 74 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++I R L K P+++L++ D++ I+ LE+GA DY+ K P LLAR+R LR+ Sbjct: 75 LSIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQR 134 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 +G Q+ + + G IDP R L++ + L+ +++LL ++ Sbjct: 135 MEPDARGKQD------ERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRV 188 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 ++RD ++ L+G DRS+DV I+RLR+K+ N EP + T+ +GYLFAP Sbjct: 189 INRDQIMDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAPSG 245 >UniRef50_A0L7S7 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7S7_MAGSM Length = 250 Score = 143 bits (360), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 136/234 (58%), Gaps = 9/234 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ +DD ++ L+ YL + D +V + G ++ + + D+V+LD++LP +DG+ + Sbjct: 7 ILVCDDDPDILRLVGDYLEQRDFRVRLADSGGAMKQILEQTQIDVVVLDLILPDEDGLQL 66 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR+LRA+ + PI++L+S M+ I+ LEMGA DY+ K P LLAR++ LR+ Sbjct: 67 CRELRARSNLPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVLRR----- 121 Query: 124 LTKGLQETSL-TPYK-ALHFGTLTID-PINRVVTLANTEISLSTADFELLWELATHAGQI 180 + L ET L P + + HF T+D P + + ++ L+ + LL H ++ Sbjct: 122 -ARSLPETILDNPEQFSYHFSGWTVDGPSRTLFAPSGNKVVLTGGEHALLRVFLHHPNRV 180 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + RD +L G + R++D+ +SRLRK+L+DNA +P IKTVRN GY+F Sbjct: 181 LSRDQILDLTYGKDQEPFGRTIDMQVSRLRKRLVDNAKDPSLIKTVRNAGYVFC 234 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 142 bits (358), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 88/233 (37%), Positives = 136/233 (58%), Gaps = 10/233 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDD + + ++ L K +V V G +A NPDLVLLDIMLP KDG Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+++R + PI++LT+ D +++ +L L+MGA DYI K LLAR+ LR+ Sbjct: 61 WEVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRY- 119 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 Q+ L+K Q+ P++ +D + R V + E++LS +FE+L L + G++ Sbjct: 120 QSDLSKS-QKIVAPPFE--------MDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRV 170 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD ++K++ G ++ G R+VDV I LR+K+ D+ + P I TVRN GY F Sbjct: 171 WTRDMIIKHIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKF 223 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 131/234 (55%), Gaps = 9/234 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ +D+ ++ ++AAY K D+ + G++A + NP +VLLD+M+P +DG Sbjct: 1 MQHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR +RAK P++L+T+ D I+ L++GA DYI+K P+ ++AR+R LR+ Sbjct: 61 YEVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRR-- 118 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 +TK +E T L L I+ + + T+ISL+ + E +W LA++ ++ Sbjct: 119 ---MTK--KENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKV 173 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEP-YRIKTVRNKGYLF 233 RD LL +L G Y G R+VD I RLR K LD P + IKT+ GY F Sbjct: 174 FTRDNLLDSLWGFDYFGDSRTVDSHIKRLRAK-LDMLEHPNWSIKTIWGVGYKF 226 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 83/231 (35%), Positives = 131/231 (56%), Gaps = 6/231 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ +ED ++ +LIA L D VT G + + DL++LDIMLP DG+ + Sbjct: 5 ILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGLQV 64 Query: 64 CRDLRAK-WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 C+ LRAK PI++LT+ S+ + ++ LE GA DY+ K L AR++ HLR+ + + Sbjct: 65 CQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTDMS 124 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 +E++ ALHFG L ID R +T+ + EI+L+ +F+LL +A+H GQ+ Sbjct: 125 Q-----KESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQVFS 179 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LL + G + G + +V+ I+RLR KL + + P + TV GY F Sbjct: 180 REKLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 135/233 (57%), Gaps = 6/233 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD + +L+ YL + QV +Q + + RE+ L++LD+MLPG+DG++I Sbjct: 7 ILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGLSI 66 Query: 64 CRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 CR LR++ + PI+++T+ +++ I+ LE+GA DYI K P LLAR+R LR+ Sbjct: 67 CRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQANE 126 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 QE ++ + FG ++ R + + + L++ +F +L L +H + + Sbjct: 127 LPGAPSQEEAV-----IAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREPLS 181 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 RD L+ RG Y ++RS+DV ISRLR+ + ++ A P I+TV GY+F P Sbjct: 182 RDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVP 234 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 140 bits (354), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 128/233 (54%), Gaps = 8/233 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M TI+ VEDD+ + ++ + QV G E R +PDL++LD+MLPG DG Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++CR + + + PIVLLT+L + + I LE+GA DY++K LLAR+R LR NE Sbjct: 61 FSVCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + T L G + +D +R V + EI LS +F+LL L +AG Sbjct: 121 RQRQTPS--------SNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVA 172 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + RD LL+ + G + G +R++DV + LR+KL + A P I+TVR GY F Sbjct: 173 LSRDLLLERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCF 225 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 140 bits (352), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 76/237 (32%), Positives = 129/237 (54%), Gaps = 5/237 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VED+ + + YL + + +V G + + L PDL++LD+M+P KDG Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C ++R + + PI++LT+ + + IL L MGA DY+ K P L+ R+++ LR+ Sbjct: 61 WELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 Q + + SL+ + + F L I P R V + E+ L+ +FE+L+ +A H Q+ Sbjct: 121 QVAIQA---KESLS--EVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQV 175 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R LL+ + ++G +V V +SRLR+KL + + + I TV GY F P+ Sbjct: 176 FSRSQLLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNG 232 >UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionella RepID=C6MYB5_9GAMM Length = 247 Score = 139 bits (351), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 132/233 (56%), Gaps = 4/233 (1%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N I+ ++DD E+ LI YL K+D + T G ++ + N DL++LDIMLPG DG+ Sbjct: 11 NHILIIDDDQEIVQLINDYLIKNDFRTTWALNGLNIKQLLRDNNFDLIILDIMLPGIDGL 70 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+ +R + PI++L++ +S + + LE+GA DYI K LLAR++ LR+ Q Sbjct: 71 DLCQMIRQTHTMPIIMLSAANSIADRVAGLELGADDYISKPFSARELLARVKAQLRRT-Q 129 Query: 122 ATLTKGLQETSLTPYKALHFGTLTID-PINRVVTLANTEISLSTADFELLWELATHAGQI 180 L+K + L+P + +HF +D + ++ T I LS ++E+L H G+I Sbjct: 130 GDLSK--ERKKLSPLQKIHFDMWILDRNTHSLIDRDATAIPLSQREYEMLLIFLEHPGRI 187 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++RD L+ L D DR++DV I RLRKK+ + P + T+R GY F Sbjct: 188 LNRDQLMDLLYDKDCDSQDRTIDVLIGRLRKKIEQDPRNPQLLLTIRGGGYQF 240 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 139 bits (351), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 130/228 (57%), Gaps = 7/228 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+DD ++ ++ AYL K V G +A + + PD+VLLD+MLP DG + Sbjct: 3 VLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWGV 62 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C+++R PI++LT+ D + + I+ LE+GA DY++K P +LAR+R R+ + A+ Sbjct: 63 CKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPAS 122 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 G + + L G +D +R +T+A T + L+ +++LL H GQ+ R Sbjct: 123 RRDGGE-------RILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFSR 175 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 L++ ++ +++G +R+VD I LRKKL + EP+ IKT+ GY Sbjct: 176 LQLIEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGY 223 >UniRef50_B9B7R2 DNA-binding response regulator n=1 Tax=Burkholderia multivorans CGD1 RepID=B9B7R2_9BURK Length = 239 Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 132/237 (55%), Gaps = 9/237 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N+I+ VEDDA++ +AA+L+ V + A+ + + DLVLLD+MLPGKDG+ Sbjct: 4 NSILIVEDDADISVPLAAFLSGKGYVTQVADSVEAADALLATNDVDLVLLDVMLPGKDGL 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ--N 119 +CR L AK I++LT+LD + ++ LE+GA DY+ K P LLAR+R LR+ Sbjct: 64 DLCRRLHAKGGPRIIMLTALDDPTDKVVGLELGADDYVPKPFDPRELLARIRAVLRRPVA 123 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVV-TLANTEISLSTADFELLWELATHAG 178 + + K + E L F T P R V + A + L+ A+ +LL L + Sbjct: 124 SEGEVAKPVTEL------VLQFSGFTFYPYRRFVRSPAGLRVPLTGAETDLLLVLCQNVR 177 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 +++ R+ L+ RG ++ RS+D+ +SRLR+KL+ N I+TVR GY F P Sbjct: 178 KVLSREELINLTRGTNFPISGRSIDLLVSRLRRKLVGNDPLEETIRTVRTDGYAFQP 234 >UniRef50_Q3A1Q2 Two component transcriptional regulator, winged helix family n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A1Q2_PELCD Length = 240 Score = 139 bits (349), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 126/236 (53%), Gaps = 2/236 (0%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ + ++ + + + YL +H + + + + PDL+++D D T+ Sbjct: 7 VMLLGENQRLSNFLTDYLHRHGYETMAALQEPGICAAVACDKPDLMIIDSTPSATDADTL 66 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 D+R + GP+++LT + + Y+ K P LLAR+R L++ + Sbjct: 67 FHDIRTVYQGPVIVLTEPTDTQPMQDDTTLLSDAYVSKPIEPHTLLARMRTLLKRFYGSR 126 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + + + P LHFG L I+ +R V I LS+ +F+LL LA HAG I+DR Sbjct: 127 GSDLSADMAKRP--ILHFGRLLINRPSRKVMFQKKTIPLSSTEFDLLTLLAGHAGTILDR 184 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 D + + LRG+ YDG+DRS+DV++SRLRKKL D RIKTV KGYLF P AWE Sbjct: 185 DTINRRLRGIPYDGIDRSIDVSVSRLRKKLGDQKGHHSRIKTVWGKGYLFVPDAWE 240 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 132/235 (56%), Gaps = 11/235 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 +I+ V+DDAE+ L+ YL++ + +V D + R +LV+LD+MLPG DG+T Sbjct: 34 SILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPGTDGLT 93 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 + R++R + P+++LT+ + + I+ LE GA DY+ K P L+AR+ LR+++ A Sbjct: 94 LSREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLRRSQGA 153 Query: 123 T-LTKGLQETSLTPYKA--LHFGTLT-IDPINRVVTLANTEISLSTADFELLWELATHAG 178 + + + + + LH T + P VV L+N A+F LL Sbjct: 154 KEVAPNVARSDVVCFDGWELHREERTLVSPTGLVVALSN-------AEFRLLNTFLQTPR 206 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ RD L++ RG + D +RS+D+ +SRLR+KL D+ EP IKTVR GY+F Sbjct: 207 RLFSRDQLMEQARGRAMDAFERSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMF 261 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 138 bits (348), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 88/242 (36%), Positives = 135/242 (55%), Gaps = 20/242 (8%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENP----DLVLLDIMLPGK 58 T++ +EDD ++ LI+ YL + +V P + ET+ NP DLV+LD+MLP Sbjct: 10 TVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLF--NPAKSIDLVILDLMLPDM 67 Query: 59 DGMTICRDLRAKWSG-----PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLR 113 DGM +C+ +R I++LT+ + +L LEMGA DY+ K P LLAR+R Sbjct: 68 DGMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIR 127 Query: 114 LHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWEL 173 +R+++ + +E +L FG L + P + VT+ + + L+T F+LL Sbjct: 128 AVMRRHDLPLHQQ--KEDNLV------FGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYF 179 Query: 174 ATHAGQIMDRDALLKNL-RGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 ATH+G+++ R+ L + S D +DR++DV ISRLR + DN +P RI TVR GY Sbjct: 180 ATHSGKVLSREQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQ 239 Query: 233 FA 234 FA Sbjct: 240 FA 241 >UniRef50_A4B9H2 Probable two-component response regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4B9H2_9GAMM Length = 227 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 126/230 (54%), Gaps = 15/230 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I VEDD + +L + +L + +VT G A + I PD VLLDIMLPG DG+ + Sbjct: 9 IALVEDDQSLATLTSDFLTREGYRVTHYAEGASALKHIPEAKPDCVLLDIMLPGLDGIEL 68 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR LR+++SGP++ LT+ ++ IL LE+G Y+ K P LLA LR LR+ T Sbjct: 69 CRQLRSRYSGPVIFLTAKGEALDEILGLEVGGDAYLAKPIEPRRLLAHLRAQLRRTATPT 128 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 T+ + ID + L + +SLS ++ LL L ++++R Sbjct: 129 TTETESTS-----------VFRIDEQRECIYLNDDPLSLSNPEYRLLQLLLGSEQRVINR 177 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 D ++ +RG+ +DG+ R+VD+ IS LRKKL D IKT+R KGYL+ Sbjct: 178 DDIMLAVRGIEHDGISRTVDILISDLRKKLPDADW----IKTIRGKGYLW 223 >UniRef50_A9AIE8 Two component transcriptional regulator, winged helix family n=243 Tax=Bacteria RepID=A9AIE8_BURM1 Length = 305 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 136/233 (58%), Gaps = 6/233 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD E+ L+ YL + M+V+V E+ + RE PDL++LD+M+PG DG+T Sbjct: 69 ILIVDDDQELRDLLRDYLVRQGMEVSVLHDAATLEKRLERERPDLIVLDLMMPGVDGLTA 128 Query: 64 CRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 R LRA P+++LT+ D++ I+ LE+GA DY+ K P LLAR++ LR+ +A Sbjct: 129 LRQLRAAGDDIPVIMLTARADDVDRIVGLELGADDYLGKPFNPRELLARVQAVLRRR-RA 187 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T + E + FG +D R +++ +LS+++F LL HA + + Sbjct: 188 TPSAAAPEQR----EPFAFGRFVLDFQARTLSIDGKPATLSSSEFALLKIFVNHALRTLT 243 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R+ LL+ L G YDG DR +DV + RLR+ L + + P I+TVR +GY+F P Sbjct: 244 RERLLELLHGPEYDGTDRGIDVQVWRLRRILETDPSTPRFIQTVRGRGYVFVP 296 >UniRef50_C4KB06 Two component transcriptional regulator, winged helix family n=18 Tax=Bacteria RepID=C4KB06_THASP Length = 242 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/235 (37%), Positives = 126/235 (53%), Gaps = 5/235 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDD +L+ Y K +V+ D + + +E LVLLDI LPGKDG Sbjct: 8 MPHIMVVEDDPVSRALLVGYFEKEGYRVSASDNADDLLQRVEQERIALVLLDIRLPGKDG 67 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +T+ R+LRA I+L+T+ D +++ I+ LE+GA DY+ K P LL R R L + Sbjct: 68 LTLTRELRAASRVGIILVTARDDEIDRIVGLELGADDYVTKPFNPRELLVRARNLLWRVA 127 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEIS-LSTADFELLWELATHAGQ 179 Q + ET F T++P R + + I L +F+LL L +HAGQ Sbjct: 128 QCAGS----ETREAEQGCFRFEGWTLNPHKRQLVSPDGRIERLPQGEFKLLMALLSHAGQ 183 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ RD L+ + + DR+VDV + R+R+KL DN A+P I T GYLFA Sbjct: 184 VLSRDQLMDAIHDREWTPNDRTVDVLVGRVRRKLDDNPADPRLILTAHGAGYLFA 238 >UniRef50_C8SEM3 Two component transcriptional regulator, winged helix family n=3 Tax=Rhizobiales RepID=C8SEM3_9RHIZ Length = 259 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 136/235 (57%), Gaps = 16/235 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ VEDD E+ ++ L ++ M V + G + +L + DL++LDIMLPG++G++I Sbjct: 29 VLIVEDDVEIARMLGETLTENGMIVEIAGNGARMNAALLNQKFDLIVLDIMLPGENGLSI 88 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR LRA + P+++LT+L +++ I LE+GA DY+ K L AR+R LR+ A Sbjct: 89 CRRLRAHTNVPLLMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRTAYAP 148 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVV-TLANTEISLSTADFELLWELATHAGQIMD 182 + K L F +DP+ R + +N ++ +T +F+LL + G+++ Sbjct: 149 DERDRS-------KVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLLAFCRNPGRVLS 201 Query: 183 RDALLKNLRGVSYDGL----DRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LL V++ GL +RSVDV +SR+R+K+ +A +P ++TVR GY+F Sbjct: 202 REELLS----VTHAGLAGPIERSVDVHVSRIRQKIEKDARDPVLLRTVRLGGYIF 252 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 128/231 (55%), Gaps = 5/231 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 IV ++DD ++ LI YL + G ++ + + PDL++LD+MLP ++G+ I Sbjct: 5 IVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENGLDI 64 Query: 64 CRDLRA-KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 C+ LR K PI++LT+ +++ I+ LEMGA DY+ K P LLAR+ R++E Sbjct: 65 CKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRHE-M 123 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 L++ + E S K + F +P R + EI L++ +F LL +A Q + Sbjct: 124 ELSEKVNEVS---GKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQPLS 180 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD +++ +G D DRS+DV ISR+RK + ++ +P +KT GY+F Sbjct: 181 RDQIMQLAKGKELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVF 231 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 137 bits (345), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 129/232 (55%), Gaps = 9/232 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ +DD V +I Y K +++ G +A E + +E PD+V+LD+M+P DG Sbjct: 35 VLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGFEA 94 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR++R KW PI++LT+ D + + +L LE+GA DY+ K P ++AR+R +R+ + Sbjct: 95 CREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQPK- 153 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 K E +L + F LTID R V +A ++S +F+LL +L G + R Sbjct: 154 -PKVEDEAAL---RTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWSR 209 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYR-IKTVRNKGYLFA 234 + LL+ + G Y G R++DV I ++R++ LD PY I+TV GY F Sbjct: 210 EQLLEQVWGFDYFGDVRTIDVHIKKIRQR-LDKL--PYDCIQTVWGIGYKFG 258 >UniRef50_C7I0W4 Two component transcriptional regulator, winged helix family n=4 Tax=Proteobacteria RepID=C7I0W4_THIIN Length = 365 Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 129/232 (55%), Gaps = 1/232 (0%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD + +++ YL + V + GD + ++ P V+LD+MLPG+DG+ + Sbjct: 130 ILVVDDDPGLRAMLRDYLTGNGFAVDLAAHGDAMRACLAQQMPHAVILDLMLPGEDGLAL 189 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 R+LR PI++L++ +++ ++ LE+GA DY+ K P LLA L + Q T Sbjct: 190 ARELRRSSDLPILMLSARGEEIDRVIGLEVGADDYLPKPFSPRELLA-RLRALLRRAQPT 248 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 L S +A+ FG +D + ++ LS A+F LL + H +++ R Sbjct: 249 SAGDLPPASKPAEQAVRFGPFLLDAAAFRLLRDGQDVGLSVAEFTLLQAMVAHPNRVLSR 308 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 D L+ L+G D DRS+DV ++RLR+K+ D+ A P ++T+R +GYLF P Sbjct: 309 DQLIDWLKGYERDAFDRSIDVRVARLRRKIEDDPARPVYVRTIRGQGYLFNP 360 >UniRef50_A5VZA1 Two component transcriptional regulator, winged helix family n=27 Tax=Gammaproteobacteria RepID=A5VZA1_PSEP1 Length = 260 Score = 135 bits (341), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 86/239 (35%), Positives = 126/239 (52%), Gaps = 12/239 (5%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +I+ V+DD E+ L+ YL++ QV E G + DLV+LD+MLP +DG Sbjct: 25 KSILMVDDDQEIRELLQTYLSRSGFQVHAEADGKGFRHALETTPCDLVILDVMLPDEDGF 84 Query: 62 TICRDLRA---KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 ++CR +R + PI++LT+ + + ++ LE+GA DY+ K P L AR++ LR+ Sbjct: 85 SLCRWVRQHPRQARVPIIMLTASSDEADRVIGLELGADDYLGKPFSPRELQARIKALLRR 144 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPIN-RVVTLANTEISLSTADFELLWELATHA 177 +E G L F +D ++ R+ E+ LS ADF LL H Sbjct: 145 SEFGQAAPG--------SAVLAFDDWRLDTVSHRLFHRDGEEVILSGADFALLKLFLDHP 196 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 QI+DRD + RG LDR VD+A+SRLR++L D P I+TVR GYL A H Sbjct: 197 QQILDRDTIGNATRGREPMPLDRIVDMAVSRLRQRLRDTDKPPRLIRTVRGSGYLLAAH 255 >UniRef50_B7VSG2 Response regulator n=19 Tax=Gammaproteobacteria RepID=B7VSG2_VIBSL Length = 234 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 124/230 (53%), Gaps = 8/230 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ VEDD + L YL V+V GD A E I PDLVLLD+MLPG G I Sbjct: 11 VLIVEDDQAIARLTTLYLEAEGYNVSVVHEGDLAIEAIRSIEPDLVLLDLMLPGLSGAQI 70 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR R ++G I++LT+ +M+ + + GA DY+ K LLAR+ LR+ A Sbjct: 71 CRQAREFYNGLILVLTASADEMSEVSLFKFGADDYVAKPIRGHALLARIEALLRR--AAP 128 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + T+ TP G + I+ + TL + L++A+FE+L L + Q++ R Sbjct: 129 VVAEPDTTAETP------GEIVINSTAQSATLYGQNLKLTSAEFEILNLLVNNICQVVTR 182 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 D + RG+ Y DRS+D+ +S LR+KL +A + I+TVRNKGY+ Sbjct: 183 DQCCQLFRGIDYAFNDRSIDMRVSGLRRKLRMHAKDKQLIRTVRNKGYML 232 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 80/240 (33%), Positives = 128/240 (53%), Gaps = 9/240 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M+ I+ VED+ + L+ L K +V GD+A + DL++LD+MLPG DG Sbjct: 1 MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDG 60 Query: 61 MTICRDLRAKWS--GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 + +CR +R S P+++LT+ ++ I+ LEMGA DY+ K P LLAR++ LR Sbjct: 61 LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120 Query: 119 NEQATLTKGLQETSLTPYK-------ALHFGTLTIDPINRVVTLANTEISLSTADFELLW 171 + + Q+ S + G L+I P + N E+ L+ +FELL Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLN 180 Query: 172 ELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 + T++GQ++ R+ LL+ + G + G R+VDV I LR+K+ + P ++TVR GY Sbjct: 181 IMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 135 bits (340), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 131/231 (56%), Gaps = 6/231 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I V+D ++ L+A YL + ++TV G++ + R+ PDL++LD+M+PG+DG+++ Sbjct: 7 IAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGEDGLSL 66 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR +R++ + P++ L++ D++ IL LEMG DY+ K P LLAR++ LR+ A+ Sbjct: 67 CRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRATPAS 126 Query: 124 LTKGLQETSLTPYKALHFGTLTID-PINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + S ++ FG ++ + ++ +SLS +F LL L G+I+ Sbjct: 127 -----EGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEIVT 181 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD LL + G + + DRS+D ISRLR+K+ + P I+T GY F Sbjct: 182 RDELLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAF 232 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 128/232 (55%), Gaps = 8/232 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ ++DD E+ L++ +L+ V E G + ++ +L ++DIM+PGK+GM + Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 R+LR S P+++LT+ +M+ IL LE+GA DY+ K P L AR+R LR+++ Sbjct: 63 LRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSDTQQ 122 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + QET FG+L P +R +T + L+ ++ +L L HAG+++ + Sbjct: 123 ESDDKQET--------RFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEVVSK 174 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 L + G + DR++DV I LRKK+ RIKTVR+ G+LF P Sbjct: 175 YELSQAALGKRHGPFDRTLDVHIGHLRKKISAADNTEARIKTVRSVGWLFVP 226 >UniRef50_Q3A7S2 Putative two component response regulator n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A7S2_PELCD Length = 242 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 79/187 (42%), Positives = 108/187 (57%), Gaps = 9/187 (4%) Query: 47 DLVLLDIMLPGKDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPA 106 DL LLD+ +D MT LR + GP+ +L + ++ HILALE+GA DY+ + Sbjct: 63 DLALLDMAASTQDAMTSIMRLREDYKGPLAVLDNHPNERRHILALEIGADDYLQQPVSSP 122 Query: 107 VLLARLRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTAD 166 VL AR+ LR+ +QA P + G LTID R VT IS++T + Sbjct: 123 VLAARIEALLRRYQQA---------EREPSAVISVGDLTIDATRREVTKNEKVISVTTVE 173 Query: 167 FELLWELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTV 226 F+LLW LA+HAG ++ R+ + L Y+G+DRSVD+ ISRLRKKL D A P +KT+ Sbjct: 174 FKLLWYLASHAGIVVSRNDIHLALYNREYNGIDRSVDMYISRLRKKLGDCPAHPTLLKTI 233 Query: 227 RNKGYLF 233 R GYLF Sbjct: 234 RGDGYLF 240 >UniRef50_A0LA52 Two component transcriptional regulator, winged helix family n=4 Tax=Proteobacteria RepID=A0LA52_MAGSM Length = 252 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/235 (35%), Positives = 132/235 (56%), Gaps = 9/235 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDD + L+ YL ++ + P G + ET+ R PDLV++D+MLPG+DG+T+ Sbjct: 14 ILIVEDDEGIRELLTDYLTQNGFICSALPDGSKLRETMDRARPDLVVMDLMLPGEDGLTL 73 Query: 64 CRDLRAKWSG---PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 R+LRA + PI++LT+ + + I+ LEMGA DY+ K P LLAR+ +R+ Sbjct: 74 TRNLRAGATTAHIPIIMLTARVEETDRIIGLEMGADDYLPKPFNPRELLARINSVMRRAR 133 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTE-ISLSTADFELLWELATHAGQ 179 +TK + +P K F +D +R ++ + E I+LS ++ELL + Sbjct: 134 SEPVTK----SDSSPVKGYRFSGWYLDIASRKLSAPDGEPITLSRKEYELLNIFLQNPQT 189 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKL-LDNAAEPYRIKTVRNKGYLF 233 +++RDA++ G +R +DV I RLRK+L DNA IKTV +GY+ Sbjct: 190 LLNRDAIMMRYGGREASPFERGIDVQIGRLRKRLQYDNADPQEMIKTVWGQGYML 244 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 129/230 (56%), Gaps = 10/230 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VED+ ++ +AAYL + RGD+A + +E PDLVLLDIMLPGKDGM + Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C++LR+ PI++LT+ +++ +L LE+GA DYI K P ++AR++ LR++ Sbjct: 67 CKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSNTP- 125 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 QE S K + G + +D +R V++ + L+ ++F +L + + ++ R Sbjct: 126 -----QEES----KRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSR 176 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + LL G ++G DR++D I LRKK+ + I ++ GY F Sbjct: 177 NELLDLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKF 226 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 129/237 (54%), Gaps = 15/237 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDDA + L+ L + V + G++A E + +E PDLVLLD+MLP DG Sbjct: 1 MVKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDG 60 Query: 61 MTICRDLRAKWSG---PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 + +C+ +R P+++L++ D + ++ LE+GA DYI K P LLAR++ LR Sbjct: 61 LDVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLR 120 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + + S P +L +G L I P + +VT+ +++L+ +FELL Sbjct: 121 EE---------RRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRP 171 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 Q+ R+ LL+ + G + G R+VDV IS LR KL + P I++VR GY A Sbjct: 172 NQVFSREYLLQKVWGYTVSGDTRTVDVHISNLRSKL--KSVSPI-IESVRGVGYRLA 225 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 128/233 (54%), Gaps = 4/233 (1%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 T++ VED+ ++ ++ +L + V A E + + DLV+LD+M+PG DG T Sbjct: 6 TVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDGWT 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 CR +R PI+ LT+ + + +L E+GA DY++K P L+ R++ LR+ + Sbjct: 66 TCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRRR-SS 124 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T + + +TP K LHF L++ P R + +SLS +++LL LA +AG+++ Sbjct: 125 TPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLS 184 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKL--LDNAAEPYRIKTVRNKGYLF 233 RD LL + G + G R+VD + RLR+KL + A Y + TVR GY F Sbjct: 185 RDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASY-VGTVRGSGYKF 236 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 131/230 (56%), Gaps = 7/230 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+DDA++ +L+ YL + +V+ P G+ E + +P +V+LDIM+PGKDG+ + Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 RDLR + P+++LT+ D + I+ LE+GA DYI K P LLAR++ LR+ Sbjct: 67 LRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRR----- 121 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 KG + + + ++ + + ++ + + + LS+ +F+LL L + G+ M R Sbjct: 122 -AKGPENNNPNSGQ-INVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTR 179 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 D L+ ++ G ++ DRS+DV IS+LR RIKTV GY+F Sbjct: 180 DDLMTSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMF 229 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 133 bits (335), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 128/236 (54%), Gaps = 13/236 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 + ++ V+DD V L+ Y + +V GD RENPD+V+LDIMLPG+DG Sbjct: 4 LGKVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDG 63 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +++CR LRA PI++LT+ + + +L LEMGA DY+ K P L+AR++ LR+++ Sbjct: 64 LSLCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQ 123 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 A Q L + L I R V + E ++ +F+LL+ LA + ++ Sbjct: 124 AADPATNWQ---------LKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRV 174 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYR-IKTVRNKGYLFAP 235 R+ LL + G Y G R+VDV I RLR KL A+ P+ ++TV GY F P Sbjct: 175 FTREELLGAVWGYDYFGDQRTVDVHIRRLRTKL---ASLPHEYLQTVWGVGYKFTP 227 >UniRef50_B2V706 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=B2V706_SULSY Length = 224 Score = 133 bits (334), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 131/234 (55%), Gaps = 13/234 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQA-EETILRENPDLVLLDIMLPGKD 59 M ++ +EDD E+ L+ YLAK ++ V +A EE ++ DL++LD+ LP D Sbjct: 1 MINVIMIEDDKELAELLTQYLAKFNISVKNFEHSKKALEELKKNQSYDLMILDLTLPEID 60 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G+ IC+ L + + PI++ ++ D + ILALE+GA DY+ K P L+AR++ LR+ Sbjct: 61 GIDICKMLAKEGNIPIIISSARSDDTDKILALEIGADDYLAKPYNPRELVARIQAVLRRK 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 +A K + G +D ++ ++L++A++ELL L + G+ Sbjct: 121 NKAV------------EKVIKCGEFELDEEGYIIKKNGEPLNLTSAEYELLSMLIKNKGR 168 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ RD +L N ++YD +DR+VDV I R+RKK+ D+ P I +VR GY F Sbjct: 169 VLTRDYILDNSIYLNYDSIDRTVDVIIGRIRKKIGDDPKNPKYIISVRGFGYKF 222 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 133 bits (334), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 121/228 (53%), Gaps = 5/228 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ ++D+ EV LI YL K QV G A E NPDL++LD++LP +G+ + Sbjct: 6 ILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNGLEL 65 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C++LR PI+ L+ +DM+ IL L +G DYI K P+ L+AR+ HLR+N T Sbjct: 66 CQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNRILT 125 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 +T+ L+ LTID N + + + + L+ +FE+L L+ H + Sbjct: 126 -----NQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFSL 180 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 L ++ GV G R+V V IS LRKK+ + A P I T++ GY Sbjct: 181 TQLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGY 228 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 133 bits (334), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 133/235 (56%), Gaps = 5/235 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M TI+ +EDD ++G+LI L T++ G++ + +PD+V+LD+ LP DG Sbjct: 1 MKTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDG 60 Query: 61 MTICRDLRAK-WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + +CR +R + PI ++T+ + +++ I+ LE+GA DYI K L R+ + R+ Sbjct: 61 IEVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 ++ K ++ + G L IDP+ R VTL + +++S +F++L +A G+ Sbjct: 121 DKKAGIK----PNVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGK 176 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + R+ +L+ + G+ +DG +R +D + R+R KL N+A+P I+T+ GY F Sbjct: 177 VFSREMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFT 231 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 132 bits (333), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 85/235 (36%), Positives = 128/235 (54%), Gaps = 7/235 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 ++TI V+DD E+ SL++ YL ++ + E R L+++DIMLPG +G Sbjct: 4 IHTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPGMNG 63 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + + R+LRA+ + P++ LT+L + I+ LE+GA DY+ K P LLAR+R LR+ E Sbjct: 64 LELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLRRTE 123 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINR-VVTLANTEISLSTADFELLWELATHAGQ 179 + TP L F +D R +V +SLS ++ LL + + Sbjct: 124 GGARR---DQPETTP---LQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQR 177 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ RD LL+ +G + DRS+DV ISRLR +L DN EP IKTVR GY+ A Sbjct: 178 VLSRDELLERTQGRNAVPYDRSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVLA 232 >UniRef50_B5J7Y1 Response regulator receiver domain protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J7Y1_9RHOB Length = 298 Score = 132 bits (333), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 127/234 (54%), Gaps = 6/234 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ ++DDA++ S + + H ++V+ G++ + + E D V+LD ++PG + Sbjct: 56 MKHLLIIDDDAKIVSFLKGFFESHGIKVSTGSSGNEMWQALESEKIDFVILDALMPGTNE 115 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 T+C +L+++ + P VL+T+LD + N I+ LE GA DY++ P LLAR+R R+N Sbjct: 116 NTLCSELKSQSNVPTVLMTALDGETNIIVGLEAGADDYVVNPFNPCELLARMRAVSRRNN 175 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLA-NTEISLSTADFELLWELATHAGQ 179 + +T+++ F + D R + + N + LS +FELL + Sbjct: 176 S---NFSMSQTNISTI--FSFSSFQFDTRRRELRASENVLVHLSRTEFELLKIFVHRPSE 230 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 +DR+ L + LRG + DRS+D+ +SRLR KL IKTVR GY+F Sbjct: 231 AIDRNTLSELLRGHELEAFDRSIDLHVSRLRSKLGPRVGGGNFIKTVRGTGYMF 284 >UniRef50_Q1K367 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K367_DESAC Length = 233 Score = 132 bits (333), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 70/189 (37%), Positives = 114/189 (60%), Gaps = 9/189 (4%) Query: 46 PDLVLLDIMLPGKDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPP 105 P+LV++D+ D + CR LR +++GP+V+L +M +L LEMGA D+++K Sbjct: 53 PELVVIDVAESSLDVASSCRFLREQYTGPLVVLAEHADEMFQVLGLEMGADDFVVKPISA 112 Query: 106 AVLLARLRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTA 165 +L AR+R LR+ + L + ++ ++T G+L +D R V+ + L++ Sbjct: 113 TLLRARIRAVLRRRQ---LAETGEDATIT------LGSLEVDSGRREVSCGGKSVDLTSK 163 Query: 166 DFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKT 225 +F+LLW LA HA ++ RD + + L G+ Y+G+DRSVD+ ISRLR KL ++ + P +KT Sbjct: 164 EFDLLWYLARHARTVLSRDQIYEALFGLEYNGVDRSVDIYISRLRNKLGEDPSRPQLLKT 223 Query: 226 VRNKGYLFA 234 VR GYL Sbjct: 224 VRGVGYLLG 232 >UniRef50_C4TUI5 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=2 Tax=Yersinia RepID=C4TUI5_YERKR Length = 235 Score = 132 bits (333), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 79/234 (33%), Positives = 133/234 (56%), Gaps = 10/234 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +T++ ++DD E+ SL+ Y K + +V P G+ T+ +E+ DLV+LD+MLPG DG Sbjct: 4 HTLLVIDDDEEIRSLLTEYFTKANFRVLSLPDGEHLLATLKQESVDLVILDVMLPGDDGF 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 T+CR R + PI++LT+ + + ++ LE+GA DY+ K LLAR++ LR+N+ Sbjct: 64 TLCRKARQVSAVPIIMLTAASDESDKVIGLELGADDYLAKPFSARELLARVKALLRRNQ- 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINR-VVTLANTEISLSTADFELLWELATHAGQI 180 + ++ T + L F +D + R ++ LS +F LL H QI Sbjct: 123 ------IVQSPGTEARFLCFNGWKLDLVRRELIDPQKQSEPLSGIEFTLLSLFLRHPNQI 176 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 +DRD + + R + L+R +DV ISRLR++L D ++ ++T+RN+GY+ Sbjct: 177 LDRDQISEITRRRENNPLERGIDVQISRLRQRLQD--SQRLLLRTLRNQGYMLC 228 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 132 bits (332), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 127/230 (55%), Gaps = 4/230 (1%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD ++ ++ AYL+K ++ G +A + PDL++LD+ LP DG + Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR +R K PI+ L+ + D++ I+ +G DYI K P VL+A+++ H+R+ ++ + Sbjct: 66 CRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKELS 125 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + + + +AL FG L ID VT ISL+ +F+LL LA +AG++ Sbjct: 126 GSP----KAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSA 181 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + L ++ G G R+V V IS LRKK+ + A P I TVR GY F Sbjct: 182 EHLFDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKF 231 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 132/234 (56%), Gaps = 4/234 (1%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENP-DLVLLDIMLPGKDG 60 + I+ ++DD + +L+ Y + ++V G +++ P D+V+LDIMLP DG Sbjct: 3 HRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDIDG 62 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + +RA P+++LT+ + + I+ LE+GA DY+ K P LLAR++ LR+ Sbjct: 63 FETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRR-- 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 AT + S A+ FG++ ID RV+ + EI+++ + ++L L +H G Sbjct: 121 -ATASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTP 179 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + RD LL G ++ DRS+DV ISR+RKKL D+ + P IKTV KGY++A Sbjct: 180 LTRDRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMWA 233 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 131/236 (55%), Gaps = 7/236 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETIL---RENPDLVLLDIMLPG 57 M IV VED+ E+ +L+ L + +V V G A E + + PDL++LD+MLP Sbjct: 1 MADIVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPN 60 Query: 58 KDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 DG+ ICR +R PI++LT+ ++++ +L LE+GA DY+ K L AR+ LR Sbjct: 61 VDGLEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILR 120 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + E + + L T + H G LTIDP++R VT + L+ +F+LL LA + Sbjct: 121 RVE---MMRALSRTEDGTTRIDH-GDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANP 176 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 G++ RD LL + G Y G+DR+VD I RLRKKL + RI T+ GY + Sbjct: 177 GRVFSRDYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKY 232 >UniRef50_C8Q1W1 Two component transcriptional regulator, winged helix family n=1 Tax=Pantoea sp. At-9b RepID=C8Q1W1_9ENTR Length = 261 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 128/238 (53%), Gaps = 16/238 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETIL---RENPDLVLLDIMLPGKDG 60 I+ VEDDAE+ +A +L T D AE +L PDL+LLD+MLPG+ G Sbjct: 29 ILIVEDDAEISRSLATFLQAKGYTATT---SDSAEAGLLFLKTHAPDLILLDLMLPGESG 85 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + CR +R+ S PI+++T+LD +++++ LE+GA DY++K VLLAR+R LR+ Sbjct: 86 LDFCRKIRSPDSPPIIMVTALDDPIDNVVGLELGADDYVIKPFDLNVLLARIRAVLRRTS 145 Query: 121 QATLTKGLQETSLTPY--KALHFGTLTIDPINRVV-TLANTEISLSTADFELLWELATHA 177 ET+ P L F T P R + + L+ + +LL L H Sbjct: 146 AI-------ETAQKPVGEAVLQFSGFTFYPSRRFLRSPTGIRKPLTGVETDLLLVLCQHV 198 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 +++ R+ L++ RG RS+D+ ISRLR+KL+ + I+T RN GY+F P Sbjct: 199 KKVLSREDLIQLTRGSEAPLSMRSIDLLISRLRRKLVTDDTNEEFIRTFRNNGYMFRP 256 >UniRef50_A3Y9U3 Response regulator protein n=1 Tax=Marinomonas sp. MED121 RepID=A3Y9U3_9GAMM Length = 243 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 80/238 (33%), Positives = 130/238 (54%), Gaps = 10/238 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ ++DD + L+ YLA++DMQ+ + + +E P ++LD+MLP +DG + Sbjct: 5 ILLIDDDESLADLLKQYLARYDMQLVSANCPSLGYQLLEKEQPQAIILDVMLPEEDGFEV 64 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C+ +R K PI++LT+ M+ ++ LE+GA DY+ K P L+ARL+ LR+ E+ + Sbjct: 65 CKHVRRKSDIPIIMLTARGDVMDRVIGLEIGADDYLGKPFEPRELVARLQTILRRLEKQS 124 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + + S + L F + I+ + V L + + L+T ++ LL +A + R Sbjct: 125 QKENQTDASSAEH-ILTFKGMGINTERQQVKLFDQRLDLTTTEYRLLLLMAKSPQTVFSR 183 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYR-------IKTVRNKGYLFA 234 D +L +L+GV + RSVD+AISRLR+K AA P IKTV GY F Sbjct: 184 DDILNHLKGVEIELFSRSVDIAISRLRQKF--KAATPDDHHVSVDFIKTVWGAGYCFV 239 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 124/232 (53%), Gaps = 8/232 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 T++ +ED+ + ++ AYL K QV G E ++NPD+V+LD+MLP G Sbjct: 9 TVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGEE 68 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 I R +R + PI++LT+ S+ I L +GA DY++K P ++ARL+ LR+ Sbjct: 69 IARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVG-- 126 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 +E + + G +TID + + + L TEISL+ +F++L LA + ++ Sbjct: 127 ------KEPGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVFS 180 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ L + G ++G R++D I LR+K+ N +P IKTV GY F Sbjct: 181 RENLADRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQFG 232 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 82/240 (34%), Positives = 127/240 (52%), Gaps = 12/240 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD + +L+ +L V Q + + RE L++LD MLP +DG++I Sbjct: 23 ILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLSI 82 Query: 64 CRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 CR LR + PI++LT+ SD + I LE GA DY+ K P LLAR+R A Sbjct: 83 CRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIR--------A 134 Query: 123 TLTKGLQETSLTPYKALH---FGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 L + ++E P + + FG+ +D R +T ++L+T +F +L L H + Sbjct: 135 VLRRQVREVPGAPSQQVEVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPRE 194 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 + RD L+ RG + ++RS+DV +SRLR+ + DN A I+TV GY+F P E Sbjct: 195 PLTRDKLMNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPDGAE 254 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 131/234 (55%), Gaps = 5/234 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N I+ V+DD E+ L+ YL V+ G + + +E +L++LD+MLPG+DG+ Sbjct: 5 NHILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGL 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ++CR++RA+ PI++LT+ + ++ I+ LE+GA DY+ K P LLAR+++ LR+ Sbjct: 65 SLCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTRN 124 Query: 122 ATLTKGL-QETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + E S ++ T ++ + +SL ++D+ +L L H + Sbjct: 125 DRNKAAVADEFSYISFEGWRLDTHA----RQMFSPEGVVVSLGSSDYMVLRALLEHPNRP 180 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + RD L++++ G +DRS+DV ISRLR + + P I+TVRN GY+ A Sbjct: 181 LSRDFLVEHVYGKESHAMDRSIDVCISRLRHHIEADTRNPTIIRTVRNAGYMLA 234 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/237 (36%), Positives = 131/237 (55%), Gaps = 10/237 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+DD E+ L+A +L + +VT +A L + LV+LD+MLPG+ G Sbjct: 27 MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESG 86 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR--- 117 + R LR + PI++LT+L + + I+ LE+GA DY+ K P L+AR+R LR Sbjct: 87 IDFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRVG 146 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 +NE T G +E+S Y+ G + R++ E+ L+ +++LL L Sbjct: 147 ENE----TPG-RESSARLYR--FAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRP 199 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 +++ RD LL LRG DR++DVAISRLR+KL D+ IKTVR GY+ A Sbjct: 200 NRVLTRDMLLDLLRGRQAGPFDRAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVLA 256 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 127/234 (54%), Gaps = 11/234 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+D+A + L+ YL + + + GD+A L N DL+LLD+M+PG DG+ + Sbjct: 9 ILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGIEV 68 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR +R K + PI++LT+ + N + E G DYI+K P ++ R++ LR+ Q + Sbjct: 69 CRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQTS 128 Query: 124 LTKGLQETSLTPYK-ALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + TP K L F L+ID VT TE+SL+ ++ELL+ LA ++ D Sbjct: 129 YF-----NANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVYD 183 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEP---YRIKTVRNKGYLF 233 R+ LLK + + G R+VD + RLR+KL N P +I TV GY F Sbjct: 184 REKLLKEVWQYEFFGDLRTVDTHVKRLREKL--NKVSPEAAKKIVTVWGVGYKF 235 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 77/230 (33%), Positives = 123/230 (53%), Gaps = 9/230 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VED+ + +AAYL + + VT G A E + + DLV+LD+MLP G + Sbjct: 11 ILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGERV 70 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR +R PI++LT+ + I+ LE+GA DY++K P L+AR+R LR+ Sbjct: 71 CRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRR----- 125 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + S + L FG LTID V + E+ L+ ++F+LL L+ + G++ R Sbjct: 126 ----VHADSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVYSR 181 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 L++ + G ++G +R++D + LR K+ DN P + TV GY F Sbjct: 182 MELVEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRF 231 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 126/232 (54%), Gaps = 6/232 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDD ++ L+ +L V V GD L E DL++LDIMLPG DG I Sbjct: 9 ILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGFDI 68 Query: 64 CRDLRA-KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 CR LR K PI+++T+ +++ +L LE+GA DYI K +LAR++ R+ E Sbjct: 69 CRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVEVD 128 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T+G + TP + G + ++P R VT+ + L++ +FELL A H G+ Sbjct: 129 QETQG--QADDTP---IELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRAFS 183 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 RD LL + G Y G +V+ I+RLR K+ + +EP +KTV GY FA Sbjct: 184 RDELLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFA 235 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 130 bits (328), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 82/231 (35%), Positives = 122/231 (52%), Gaps = 14/231 (6%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 T++ VED+ + L+ Y K V G++A DL +LDIM+P DG+ Sbjct: 4 TVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGLA 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR++R + PI+LLT+ + + +L E+GA DY+ K P VLLA+ + LR+ Sbjct: 64 VCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRT--- 120 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 +L L F LTI+ ++ V L E+ LS +++LL L+++ G + Sbjct: 121 --------GTLNDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIALS 172 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD +L N+ G Y G R+VD I RLR+KLLD A I TVR GY F Sbjct: 173 RDRILDNVWGYDYFGDIRTVDTNIKRLREKLLDKAN---YIATVRGSGYKF 220 >UniRef50_D1U371 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U371_9DELT Length = 239 Score = 130 bits (327), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 76/219 (34%), Positives = 119/219 (54%), Gaps = 1/219 (0%) Query: 15 SLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTICRDLRAKWSGP 74 +L+ YL + +V P GD A E + R+ P LV+LD+M+PG++G+ + RD+RA P Sbjct: 18 ALLTEYLEGYGFKVRTLPSGDGAVEAVGRDTPSLVILDVMMPGRNGLDVLRDIRAGSKVP 77 Query: 75 IVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQATLTKGLQETSLT 134 +++LT+ D + I+ LE+GA DY+ K P LLAR++ LR+ E T G ++ Sbjct: 78 VIMLTAKGEDTDRIVGLELGADDYMPKPFNPRELLARIKAVLRRAETVG-TSGGAPSAAQ 136 Query: 135 PYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDRDALLKNLRGVS 194 + G L ++ V+ + E+ LS +F LL L + + RD L+ G Sbjct: 137 RAVLVEAGGLALNVSRHVLLVDEDELELSATEFRLLRALMENPDTALTRDELMSLAWGRD 196 Query: 195 YDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + DRS+DV +S+LR L A RI+TV GY+F Sbjct: 197 FSAYDRSIDVHVSKLRSLLRPYAGHDKRIRTVWGTGYMF 235 >UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=18 Tax=Proteobacteria RepID=Q4ZUU7_PSEU2 Length = 259 Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 129/230 (56%), Gaps = 10/230 (4%) Query: 5 VFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTIC 64 + V+DD + L+ YL + ++ G Q + + E D+V+LD+MLPG+DG+++C Sbjct: 33 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLMLPGEDGLSLC 92 Query: 65 RDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQATL 124 R LR+ PI++LT+ + I+ LE+GA DY+ K P L+AR++ LR+ Sbjct: 93 RWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDE-- 150 Query: 125 TKGLQETSLTPYKALHFGTLTIDPINRVVTLANT-EISLSTADFELLWELATHAGQIMDR 183 + Q T+ + F ++ + R +T A+ + LS A+F LL +++ R Sbjct: 151 -RSDQRTT------IRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSR 203 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + LL RG S + DRS+D+ +SRLR+KL D+ P IKTVR +GYLF Sbjct: 204 EQLLDAARGRSIEAFDRSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLF 253 >UniRef50_A8VQC0 Response regulator receiver protein n=2 Tax=Bacillaceae RepID=A8VQC0_9BACI Length = 240 Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 11/233 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 + TI+ VED+ + ++ AY K + G Q L +PDLVLLD+MLPG+DG Sbjct: 15 VTTIMIVEDEWAIARVLDAYCKKRGWHTVMVEDGHQVMAVFLDASPDLVLLDVMLPGRDG 74 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +I ++R + P+V+LT+LD + + + GA DYI K ++AR+ L++ Sbjct: 75 WSILSEIRERSDCPVVMLTALDELDDRLKGFDGGADDYIAKPFHGEEVVARIAAVLKRQP 134 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T A+ FG L I R V L+ ++ L+ D LL LA H ++ Sbjct: 135 SEEKT-----------DAMEFGDLEIRDGERRVYLSGKQVELTPKDTALLIHLAKHPNRV 183 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD L++++ G Y G DR+VD+A+ R+R+ L E I+T+R +GY F Sbjct: 184 WSRDELIEHVWGWDYTGSDRAVDLAVKRIRQALRKWDDEHGGIRTIRGEGYSF 236 >UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y0H8_9GAMM Length = 241 Score = 130 bits (326), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 125/233 (53%), Gaps = 2/233 (0%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ VEDD E+G LI L ++ V + A + I + L+LLDI LP DG+++ Sbjct: 6 LLIVEDDREIGKLITTQLTSLNLHVDHVISAELALKKIAKHPYGLILLDINLPQMDGLSL 65 Query: 64 CRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 CR ++ + + ++LLT+L SDM+ ++ LEMGA DYI K L AR++ LR Q Sbjct: 66 CRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLRHRAQL 125 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 ++ E S+ + L G+L I+ + V LA I+L+ +F+LL A H + Sbjct: 126 LASQNTDEPSVASEQTLKVGSLNIEFDSHQVYLAEQAINLTATEFDLLVYFARHPNHVFS 185 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R LL + G + G + +V+ I+RLR KL + + P I+TV GY P Sbjct: 186 RQQLLDKVWGYQHSGYEHTVNSHINRLRAKLELHQSTPI-IETVWGVGYKLNP 237 >UniRef50_Q2N765 DNA-binding response regulator n=8 Tax=Proteobacteria RepID=Q2N765_ERYLH Length = 248 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 130/233 (55%), Gaps = 10/233 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+D+ + +A YLA +++ A +L E PD+ L+DIM+PG+DG+++ Sbjct: 13 ILLVDDEPSLREPLAEYLAGQGFRISEADSAAGARSVLLNERPDIALVDIMMPGEDGLSL 72 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 R L P++LLT+ + I+ LE+GA DY+ K P L+AR+R LR+ +A Sbjct: 73 TRHLIETRDLPVILLTARGETTDRIIGLEIGADDYVTKPFEPRELVARIRSVLRRAGRA- 131 Query: 124 LTKGLQETSLTPYKALH-FGTLTIDPINRVVTLANTE-ISLSTADFELLWELATHAGQIM 181 ++ A + F +DP+ R +T + +++STA+F +L H +++ Sbjct: 132 -------PAVDAEDAFYVFEGWQLDPLKRRLTDPDGALVAISTAEFRMLRAFLDHPKKVL 184 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 DRD LL ++G DR+VD +SRLR+K+ ++ P+ I+TVR GY FA Sbjct: 185 DRDRLLDLVQGREAHLFDRAVDNQVSRLRRKIEADSRNPHFIQTVRGGGYRFA 237 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 129 bits (325), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 135/230 (58%), Gaps = 7/230 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+D+ + + L + +V G++A E + D++LLDIMLP DG+++ Sbjct: 14 VLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLSV 73 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C+ +R + PI++LT+ DM+ IL L+ GA DYI K + AR++ LR+N ++ Sbjct: 74 CQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRN--SS 131 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 +T+ Q++++ + G + ID +R + +A+ EI+L+ +F+LL LA + G++ R Sbjct: 132 ITQKEQKSNV-----IKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYSR 186 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 D LLK + G Y G R+VDV + RLR+K+ +N +EP + T GY F Sbjct: 187 DNLLKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >UniRef50_A1VTZ3 Two component transcriptional regulator, winged helix family n=1 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VTZ3_POLNA Length = 255 Score = 129 bits (325), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 129/232 (55%), Gaps = 13/232 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 T++ ++DDAE+ ++ L MQ+ + + PD++LLD+MLP +G+ Sbjct: 30 TVLMIDDDAELAGMVGELLLGQGMQLRSAATAALGLAALAQRQPDVLLLDLMLPDANGLD 89 Query: 63 ICRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR LR + P+++LT+ + +L LE+GA DY+ K P L+AR+R R+ + Sbjct: 90 VCRRLRESGNDLPVLMLTARGDPFDRVLGLELGADDYLGKPFDPRELVARIRALARRGQS 149 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 A + L F L++D + R T ++L++++F+LL LA+ G + Sbjct: 150 ARRST-----------QLRFNGLSLDLLARRATCPAGALALTSSEFKLLLALASQPGASV 198 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+AL ++ SY LDR+VDV ++RLRKKL A E I+TVR +GY+F Sbjct: 199 SREALCAAVQPGSYMPLDRAVDVQVARLRKKLA-AAGEREWIETVRGEGYVF 249 >UniRef50_Q2NZ71 Two-component system regulatory protein n=18 Tax=Proteobacteria RepID=Q2NZ71_XANOM Length = 242 Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 129/235 (54%), Gaps = 9/235 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+DD ++ LI +L+ H QV + + + + PDL++LD+M+PG+DG++ Sbjct: 10 CVLVVDDDPDLRKLIGEFLSAHGYQVDMAENVAEMRSVMAQRRPDLIVLDVMMPGEDGLS 69 Query: 63 ICRDLRAKWSGP-IVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 R L ++ P +++L++L +D + I+ LE+GA DY+ K P LLAR+R LR+++ Sbjct: 70 AARTLASERGSPAVIMLSALGNDTDRIIGLEVGADDYLAKPCNPHELLARVRALLRRSQS 129 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINR-VVTLANTEISLSTADFELLWELATHAGQI 180 + E S F +D + R + I+LS +F LL H ++ Sbjct: 130 SN------EQSDQRGNVYEFAGWRLDVVRRDLRDPTGIFINLSDGEFALLRTFVEHPQRV 183 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + RD LL+ RG D DR++D ISRLR+K ++ I+TVRN+GY+ P Sbjct: 184 LSRDQLLECARGRDTDVYDRAIDSQISRLRRK-INERVHTELIRTVRNEGYMLLP 237 >UniRef50_Q1LHM7 Two component transcriptional regulator, winged helix family n=25 Tax=Proteobacteria RepID=Q1LHM7_RALME Length = 261 Score = 129 bits (324), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 130/231 (56%), Gaps = 5/231 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+DD ++ +++A YLA M+ G + ++ DLV+LD+ LPG++G+T+ Sbjct: 29 LLIVDDDPQIRAMLAEYLATFGMEAEGAEGGTAMRAAMSKQEYDLVILDLSLPGENGLTL 88 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR++R + P+++LT+ + ++ LE+GA DY+ K L+AR+ LR++ Sbjct: 89 CREIRESSNLPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLRRSRADV 148 Query: 124 LTKGLQETSLTPYKALHFGTLTID-PINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + P + F ++ + ++V +T + LS A+F LL H +++D Sbjct: 149 ----RRPAPAAPGHEVRFAAWRLNTTLRQLVDAEDTVVPLSNAEFRLLLTFIEHPNRVLD 204 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ L+ RG D DRS+D+ +SRLR+KL D+ + I+TVR +GY+F Sbjct: 205 REMLINTARGRDLDVFDRSIDLLVSRLRQKLRDDPRDSALIRTVRGEGYVF 255 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 129 bits (324), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 123/235 (52%), Gaps = 12/235 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M T++ VED+A V +I YL +H +V V G + PDLVLLD+M+PG DG Sbjct: 22 MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + R RA P++ LT+ D++++ +L LE+GA DY+ K A LLAR+R +LR++ Sbjct: 82 LEFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRSS 141 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + P L G L +DP R + + L+ ++FEL+ G++ Sbjct: 142 EP-----------LPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRV 190 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R LL+ L+ + G +R++DV + LR K+ +P I+TV GY P Sbjct: 191 FTRLELLEQLQEEAL-GSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNP 244 >UniRef50_B7VKB0 Putative response regulator n=1 Tax=Vibrio splendidus LGP32 RepID=B7VKB0_VIBSL Length = 244 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 134/235 (57%), Gaps = 13/235 (5%) Query: 2 NTIVFVEDDAE-VGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 N ++ V DD++ + ++ YL + V G++ + + PDL++LDIMLPG DG Sbjct: 11 NKVILVVDDSQDILDALSEYLERSSFTVITALEGNEMWKKLEIVTPDLIILDIMLPGDDG 70 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +T+C+ LR + PI++LT++ D + I LE+GA DYI K+ P LLAR++ LR Sbjct: 71 LTLCQKLRLQSQVPIIMLTAVTDDADRIAGLEIGADDYITKSFNPRELLARIKALLR--- 127 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTE-ISLSTADFELLWELATHAGQ 179 ++T + E + L F T D + R + + E +SLS+AD+ LL + Q Sbjct: 128 RSTFSHSQGE------RTLKFMDWTFDTLKRQLKHEDGEVVSLSSADYNLLTLMLDSPNQ 181 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ R+ + + L G + L+R +DV ISRLRK+L D+ + I TVR++GY+ Sbjct: 182 LLSRNDIAQALWGRDAEPLERGIDVQISRLRKQLRDD--DRNTIMTVRHRGYMLV 234 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 126/236 (53%), Gaps = 15/236 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DDA + LI+ YL K + G++A P+L+LLD+MLPG DG + Sbjct: 7 ILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGYEV 66 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ----- 118 CR++R + PI++L++ + +L LE+GA DY++K L+AR++ LR+ Sbjct: 67 CREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVPSQ 126 Query: 119 -NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + +T+ L + P L I+ N VT I + + EL + LA+H Sbjct: 127 STSEQVITQELGDFVSYP-------DLIINQSNYSVTYFGDSIEMPPKELELFYFLASHP 179 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 Q+ R+ LL ++ G Y G R+VDV I RLR+K+ D+ + +R+ TV GY F Sbjct: 180 NQVFTREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHIS--WRLSTVWGIGYKF 233 >UniRef50_B6R185 Response regulator in two-component regulatory system with EnvZ, OmpR family n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R185_9RHOB Length = 239 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 126/235 (53%), Gaps = 9/235 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 T++ V+DD E+ SL A +L V ++A E + + DL++LDIMLPG++G+ Sbjct: 6 KTLLIVDDDEEIASLTADFLKDRGYTVFTANSAEEAMELLDTNHIDLMVLDIMLPGENGL 65 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 T+C+ +R PI++++++ D I+ LE+GA DY+ K P L AR+ R+ E Sbjct: 66 TLCQRVRQTSKMPIIIISAITGDTERIVGLELGADDYLEKPFNPRELQARIFAIFRRTED 125 Query: 122 ATLTKGLQETSLTPY-KALHFGTLTIDPINRVVTLAN-TEISLSTADFELLWELATHAGQ 179 ET+ P + F +D R +T + + LS+++F+ L + Sbjct: 126 V-------ETAAAPKAQRFEFSGWKLDEATRHLTAPDGVLVHLSSSEFDALLTFVKSPQK 178 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + RD L + LRG D DRS+D+ ISRLRKKL I TVR++GYLF+ Sbjct: 179 PISRDTLGRVLRGAKVDSHDRSIDILISRLRKKLAQTDPNTDFITTVRHQGYLFS 233 >UniRef50_B0KI24 Two component transcriptional regulator, winged helix family n=3 Tax=Pseudomonas putida RepID=B0KI24_PSEPG Length = 240 Score = 129 bits (323), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 78/239 (32%), Positives = 139/239 (58%), Gaps = 5/239 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 T++ V+DD E+ L+ YL V G+Q E + R+ +LV+LD+MLPG+DG+ Sbjct: 3 TTLLVVDDDDEIRELLCDYLKDAGYNVLAAADGEQMREQLARQKVELVVLDLMLPGEDGL 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ++CR L+A +++L++ S ++ I+ LE+GA DY+ K P L+AR++ LR+ ++ Sbjct: 63 SLCRQLQATPGLAVIMLSAKGSTLDRIIGLEVGADDYLAKPFEPRELIARIKAVLRRPQR 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTE-ISLSTADFELLWELATHAGQI 180 L +E ++ A F ++ + R++T + E ++L +D+ +L EL ++ Sbjct: 123 --LDAQAEEPAV--MDAQLFAGFRLEHVKRLLTRPDGETLTLPRSDYRVLRELLEANNRV 178 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 + RD L ++ G + DRSVD+ +SRLR++L A +I T+RN+GYL + + E Sbjct: 179 VSRDQLTRSAFGRDHLPDDRSVDMCVSRLRQQLRRAPAGAAQILTIRNEGYLLSIASHE 237 >UniRef50_C0Z911 Two-component response regulator n=4 Tax=Firmicutes RepID=C0Z911_BREBN Length = 255 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 124/230 (53%), Gaps = 10/230 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 + I+ VED+ + ++ AYL K++ +V G++AE +P LVLLD+MLPG+ G Sbjct: 30 HNILIVEDELPISRVLKAYLEKNNFRVEQAFNGEEAERKFDSHSPALVLLDVMLPGRSGW 89 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +I +RAK S P+++LT+L N + L GA DYI K ++AR+ LR+++Q Sbjct: 90 SILEYIRAKSSCPVIMLTALGQIDNKLAGLNKGADDYITKPFIADEVVARVHAVLRRSKQ 149 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 +++ FG+L +D V L E++ + D L LA + Q Sbjct: 150 LIEGNHVKQ----------FGSLKVDFKAYSVMLHGIELAFTPKDLCLFLFLAQYKNQTF 199 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 R+ L++ + G+ Y+G DR+VD+AI R+R+ L + I+T R GY Sbjct: 200 TREQLIEQVWGMDYEGSDRAVDLAIKRIRRSLENWPTSEGEIRTYRGLGY 249 >UniRef50_C1IA20 Two-component system response regulator n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1IA20_9CLOT Length = 233 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/234 (34%), Positives = 129/234 (55%), Gaps = 14/234 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 +I+ +EDD ++ ++ L K +V V P G + ++ I NPDL+LLDIML DG + Sbjct: 4 SILIIEDDRDISEILRFALIKEGYKVKVNPNGLEVKDEIKNFNPDLILLDIMLNDTDGFS 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR++ + ++ PI++L + M+ IL LE+GA DYI K ++ R+R+ +R+ E+ Sbjct: 64 VCRNI-SGYNIPIIMLIARVDIMDKILGLELGADDYITKPFDIREVITRVRVAIRRREEM 122 Query: 123 T--LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 +T QE L + I+ R V + N EI L +FELL L + ++ Sbjct: 123 KKLITSKEQEEILVD-------NIVINEACRSVHVNNEEIQLKPKEFELLTFLCKNTNKV 175 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ LL + G + G R+VDV I+RLRKKL DN + I+T+ GY+ Sbjct: 176 HSRNQLLDLIWGYDFLGDTRTVDVHITRLRKKLKDN----FNIETIFGVGYMLK 225 >UniRef50_B4SKL2 Two component transcriptional regulator, winged helix family n=2 Tax=Stenotrophomonas maltophilia RepID=B4SKL2_STRM5 Length = 235 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 137/233 (58%), Gaps = 14/233 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILR-ENPDLVLLDIMLPGKDGMT 62 ++ V+DDA + IA L H QV V G A + +L+ E PD+++LD M+PG+DG++ Sbjct: 7 VIVVDDDASIRDAIADCLLLHGYQVRVAA-GAMALDMLLQAERPDVIILDWMMPGEDGLS 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR L+A+ + PI++L+++ S + ++ LEMGA DY+ K P LLAR+R LR+ ++ Sbjct: 66 VCRRLQAR-AIPILMLSAMGSAPDRVIGLEMGADDYLAKPFDPRELLARVRALLRRQDKL 124 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T+ E ++ L R++ E+ LS +F LL LA G+++ Sbjct: 125 R-TQVASEMRFAGWRLLP-------EQRRLIAPDGAELVLSRGEFSLLLVLAERPGRVLA 176 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNA--AEPYRIKTVRNKGYLF 233 R+ LL+ R D +DR++D+AISRLR+KL A AE ++T+R +GY F Sbjct: 177 REQLLQLSRSEPSDSVDRAIDLAISRLRRKLGQAAPGAEAL-VQTLRGEGYRF 228 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 125/231 (54%), Gaps = 8/231 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M +++ VED+ + +A L K + TV G A R D+VLLD+MLPG G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ LRA+ S P++++T+ DS+++ ++ LE+GA DY+ K L+AR+R Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIR------- 113 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 A L +G + S L G + +D VV++ I+L +F+LL L ++G++ Sbjct: 114 -AVLRRGGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRV 172 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 + R L+ + G Y G +++DV + RLR K+ + A P + TVR GY Sbjct: 173 LTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGY 223 >UniRef50_A9BR19 Two component transcriptional regulator, winged helix family n=30 Tax=cellular organisms RepID=A9BR19_DELAS Length = 252 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 87/242 (35%), Positives = 132/242 (54%), Gaps = 16/242 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILREN-------PDLVLLDIMLP 56 ++ +EDD + ++ YL + +QVT E + + PDLV+LD+MLP Sbjct: 12 LLMIEDDTRLAQMVGDYLGNNGLQVTHMGDARSGLEQLQPADGVPGADLPDLVILDLMLP 71 Query: 57 GKDGMTICRDLRA----KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARL 112 DG+ +CR +RA P+++LT+ M+ I+ LE+GA DY+ K P LLAR+ Sbjct: 72 DMDGLEVCRRIRALPGPAAQVPVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARI 131 Query: 113 RLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWE 172 R LR+ T Q T+ AL FG+L ID R VT+A L++ F+LL Sbjct: 132 RAILRRRGGGEGTANAQVTT-----ALRFGSLEIDRDARSVTVAGQPCELTSYQFDLLVT 186 Query: 173 LATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 LA AG+++ RD +++ +RG + DRS+DV + R+R + + P RI TVR GY+ Sbjct: 187 LAERAGRVLTRDQIMEAVRGRELEAFDRSIDVHMGRIRAAIEADPKAPKRILTVRGVGYV 246 Query: 233 FA 234 FA Sbjct: 247 FA 248 >UniRef50_Q2BRQ1 Transcriptional regulatory protein CpxR (Fragment) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BRQ1_9GAMM Length = 235 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 128/235 (54%), Gaps = 7/235 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILR-ENPDLVLLDIMLPGKDGMT 62 ++ V+DD E+ LI YL + D+A E + R E L++LD+M+PG+ G+ Sbjct: 6 LLMVDDDVELCELIGDYLRHEGYLIEFAHNADEACEQLKRSERFALMILDVMMPGRTGLE 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 + + +R K P+++LT D++ IL LEMGA DY+ K P LLAR+R LR+ E Sbjct: 66 LLQQIRPKVQIPVIMLTGRGEDIDRILGLEMGADDYLSKPCNPRELLARIRAVLRRAEPQ 125 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 Q T+L P + +T+DP R V + + L+ +F +L L +AG +++ Sbjct: 126 ------QRTTLFPDSLVEHAGVTLDPGLREVRINGELLELTGTEFNVLAYLIANAGSVLE 179 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 ++ L + + DR++DV +SR+R+KL + ++ IKT+R GY F A Sbjct: 180 KEQLTELVLHRKLAAYDRAIDVHVSRVRQKLAKHLSDAELIKTIRGVGYQFVKDA 234 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 80/239 (33%), Positives = 123/239 (51%), Gaps = 16/239 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ +EDDA++ SL+ L K ++ + G A E + PDL+LLDIMLP DG Sbjct: 6 MKKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDG 65 Query: 61 MTICRDLRAK---WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 + IC+ +R + P++ LT+ S+ + I+ LE+GA DY++K L+AR++L R Sbjct: 66 LDICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFR 125 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 TP + L G + +D + V L ++L+ +F LL L Sbjct: 126 NQA-------------TPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRP 172 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 G + R+ LL + G DR+VDV + RLR+K+ + A P I +VR GY F P Sbjct: 173 GVVFSREQLLNAVWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFEPR 231 >UniRef50_B9L1L3 Two-component response regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L1L3_THERP Length = 224 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 128/235 (54%), Gaps = 16/235 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDDA + ++ +L + V G A +E+PDLV+LD+MLPG G Sbjct: 1 MAHILVVEDDARIAKILELFLRRDGHTVVTVADGTAALARFEQEHPDLVILDLMLPGTHG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR LR + + PI++LT+LD + + + L++GA DY+ K P LLAR+R LR+ Sbjct: 61 RDVCRALRLRHATPILMLTALDDERDIVEGLDLGADDYVTKPFKPNELLARVRALLRR-- 118 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 S P + L +G + ID R V + + ++L +F+LL L + AG+I Sbjct: 119 ----------ASGPPVRELVYGDIRIDREARTVFIDDEPVTLRPREFDLLLALVSQAGRI 168 Query: 181 MDRDALLKNL-RGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + R LL+ + D R++DV ++RLR+KL + RI+++R GY A Sbjct: 169 ISRQRLLQQVWCDHEIDEASRTLDVHVNRLRQKLQKSRV---RIESIRGIGYRLA 220 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 124/231 (53%), Gaps = 7/231 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M +++ VED+ + +A L K + TV G A R D+VLLD+MLPG G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ LRA+ S P++++T+ DS+++ ++ LE+GA DY+ K L+AR+R LR+ Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGA 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + L G + +D VV++ I+L +F+LL L ++G++ Sbjct: 121 DND-------DAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRV 173 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 + R L+ + G Y G +++DV + RLR K+ ++ A P + TVR GY Sbjct: 174 LTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGY 224 >UniRef50_A3ERN0 Putative two component transcriptional regulator, winged helix family n=2 Tax=Leptospirillum sp. Group II RepID=A3ERN0_9BACT Length = 231 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 131/233 (56%), Gaps = 15/233 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ +ED+A++ +L+ Y + +VT G + +PDL++LD+MLPG DG+++ Sbjct: 5 ILVIEDEADIVTLLKHYFLQEHFEVTTTGNGLEGLSLARTLHPDLIVLDLMLPGLDGLSV 64 Query: 64 CRDLRAK--WSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 R L+ +G P+V+LT+ + + I+ LE+GA DYI+K P LLAR++ LR+ E Sbjct: 65 NRSLKKDPLTAGIPVVILTAKSDETDRIVGLELGADDYIVKPFNPKELLARIKAILRRTE 124 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 Q E + P + G + +D +T + L+ +F LL L ++G++ Sbjct: 125 Q--------EPAQRPERFSAAGVV-LDIARHEARAGDTLLDLTAKEFSLLLALVKNSGRV 175 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 +DR LL + G Y+G DR+VDV I RLRKKL D R++TV+ GY F Sbjct: 176 LDRQMLLDLVWGADYEGTDRTVDVHIRRLRKKLGDYQD---RVQTVKQIGYKF 225 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 124/234 (52%), Gaps = 10/234 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 MN I+ +ED+ V ++ AYL + V G E +E DLV+LD+MLP DG Sbjct: 1 MNNILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ LR I +LT+ + + I L +GA +Y+ K P L AR+ R+ Sbjct: 61 EEVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRR-- 118 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 G ++ ++ + L ID R+V L+ EI+L+ +F++L+ LA++ G++ Sbjct: 119 -----VGCKKENVISFND---NKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQGKV 170 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+A+++ G+ +DG DRS+DV I LRKK+ ++ P I TV GY F Sbjct: 171 FTREAIIERAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKFG 224 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 126 bits (317), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 123/230 (53%), Gaps = 9/230 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD ++ ++ L K +V G++A + + +PDLV+LD+M+PG DG Sbjct: 5 ILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGFET 64 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 + L+A+ PI++L++ +++ ++ MG DY K P L R++ LR+ Sbjct: 65 YQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRR----- 119 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 L E + L +G LT+D R V + N+++ L+ FELLW +A++ ++ + Sbjct: 120 ----LGEPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVFTK 175 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 LL + S+ G D +V V I RLR+K+ + + P IKTV GY F Sbjct: 176 AHLLDKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKF 225 >UniRef50_C5D1A0 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C5D1A0_VARPS Length = 248 Score = 126 bits (317), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 124/237 (52%), Gaps = 5/237 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I ++D+ ++ L+A YL H +VT G + + DLVLLD+ LPG+DG +I Sbjct: 7 IAVLDDEIDITQLLANYLQSHGFRVTQLHNGPSLMALMDSDPADLVLLDLGLPGEDGFSI 66 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ----N 119 R +R W +V++T ++ ++ LE+GA DY+ K L+AR++ LR+ + Sbjct: 67 ARRMRENWRCGLVIVTGRGDAVDKVVGLEVGADDYVTKPFDLRELVARVKAVLRRLAPDD 126 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTE-ISLSTADFELLWELATHAG 178 + + L L F +D R +T + ++L+ +F+LL A H G Sbjct: 127 APVAVPASSRPAGLASADRLRFAGWQLDLAARSLTNPQGQNVALTGGEFDLLCAFARHPG 186 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 +++ RD LL+ RG DR++DV + RLRKK+ + EP +K+VR GY+ P Sbjct: 187 RVLSRDFLLEQTRGREASPFDRTIDVQVGRLRKKIEADPDEPQIVKSVRGAGYILVP 243 >UniRef50_Q21BK9 Two component transcriptional regulator, winged helix family n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q21BK9_RHOPB Length = 242 Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 124/233 (53%), Gaps = 8/233 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I V+D+ + S + +Y V DQ + RE D +LLDI LP DG+T Sbjct: 13 VIAIVDDEPLIQSTLVSYFQNAGFAVRSAETADQLRRLMARERIDFILLDIRLPDGDGLT 72 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 + RD+RA P++L+TS + + I+ LE+GA DY+ K P +LAR++ LR+ +A Sbjct: 73 LMRDIRADSDVPVILITSRAEEADRIIGLELGADDYVTKPFSPREVLARVKTVLRRT-RA 131 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTE-ISLSTADFELLWELATHAGQIM 181 G + + F +D N +T A+ E + L++A+FELL L H G+IM Sbjct: 132 VADPGRGK------RLRRFAGWCLDLENHRLTSASGEPMRLTSAEFELLAALVRHPGRIM 185 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ LL + +D DR+VDV + RLR+K+ + +P I T GY+FA Sbjct: 186 SRNDLLDVMSSREWDSNDRTVDVLVGRLRRKIEADPGKPQIIVTEYGLGYVFA 238 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 90/236 (38%), Positives = 136/236 (57%), Gaps = 12/236 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENP--DLVLLDIMLPGKDGM 61 I+ V+D+A + L++ L K +V + G T L+ P DLVLLDIMLP DG+ Sbjct: 3 ILVVDDEAPIRELLSFNLKKSGYEVEMAADG----RTALQRAPEADLVLLDIMLPEVDGL 58 Query: 62 TICRDLRA--KWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 +CR L+A + SG PI++LT+ +++ +L LE+GA DY++K LLAR++ LR+ Sbjct: 59 EVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRR 118 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 + A++ KG +E ++L G L +D + L + I+L+ ++ELL L T+ G Sbjct: 119 S--ASVQKGSRENK-EREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPG 175 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + RD LL+ + G Y G R+VDV I LR KL D+ I+TVR GY FA Sbjct: 176 RAFSRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFA 231 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 127/236 (53%), Gaps = 18/236 (7%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ +EDD ++ LI YL + G R PD +LLD+MLPG DG+ Sbjct: 3 KKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGL 62 Query: 62 TICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 T+ R ++ A + P+V++T+ + + ++ LEMGA DYI+K P ++AR++ LR+ Sbjct: 63 TVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRR 122 Query: 119 NE-QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 E Q LT+ + G +TID T L+ +F+LL L A Sbjct: 123 RETQQRLTE-----------RMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVA 171 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 G+++DR+ LL + G Y+G DR+VDV I RLRKK+ ++AA ++TV+ GY F Sbjct: 172 GRVLDRETLLNTVWGDDYEGTDRTVDVHIRRLRKKMGESAA---WVETVKQIGYRF 224 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 82/235 (34%), Positives = 128/235 (54%), Gaps = 9/235 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+DD + L++ LA+ V ++A + + E+ D+ ++DIMLPG DG Sbjct: 28 KKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGF 87 Query: 62 TICRDLRA--KWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 + R LR+ K+ P+V L++ + + +L LE+GA DYI K ++AR++ R+ Sbjct: 88 ELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRR 147 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 + + QE P K + G L ID V + + ++SL+ +FELL LA + G Sbjct: 148 IQLSA-----QEREERPKKIVAKG-LEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEG 201 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ RD LL L G Y G R+VDV I RLR K+ ++ + P I TVR KGY F Sbjct: 202 KVFSRDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKF 256 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/240 (34%), Positives = 129/240 (53%), Gaps = 13/240 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD ++ L+ YL V G + E + V+LD+M+P DG + Sbjct: 13 ILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGFEM 72 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA- 122 + LR + P+++LT++ + + I+ LEMGA DY+ KT LLARLR R++ + Sbjct: 73 LKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHRLSM 132 Query: 123 --TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T+ +++ +LT G L I R L+ ++L+ +++LL LA ++ Sbjct: 133 DRTVKSQVKDNTLTA------GELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARV 186 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF----APH 236 + RD LL + G SYD DRSVDV IS LR+KL ++ P I+TVR GY+F APH Sbjct: 187 LSRDQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFNDPDAPH 246 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 128/233 (54%), Gaps = 9/233 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDDA++ +++ +L +V G + + + N D ++LD+MLPG DG+ I Sbjct: 7 ILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGLEI 66 Query: 64 CRDLRA--KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 CR RA +++ PI++ ++ S+++ IL LE+GA DY+ K L+AR++ LR+ Sbjct: 67 CRRARAMTRYT-PIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRR--- 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 L S L L IDPI R ++ + L+ +F+LL+ A H G++ Sbjct: 123 ---VDALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKVF 179 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R LL + G ++G + +V+ I+RLR K+ + AEP RI TV +GY A Sbjct: 180 SRMDLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLA 232 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 119/229 (51%), Gaps = 3/229 (1%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+ E+ LI YL V G +A E I +N D+ +LDIMLP DG Sbjct: 4 NILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDIDGFH 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 IC+ +R K+ PI++LT+ D++ I+ L +GA DYI K P ++AR++ LR+ + Sbjct: 64 ICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRYMRY 123 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + Q + Y L I+ +L E++L+ +F +LW L H G+++ Sbjct: 124 NNSYEQQSIIVNEYD---IKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGKVVP 180 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 + L + + G Y + +V I RLR+K+ + + P IKTV GY Sbjct: 181 SEELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGY 229 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 127/232 (54%), Gaps = 7/232 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+D+A + ++ L +V G++A +E P LV+LD+M+P DG + Sbjct: 8 ILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYGV 67 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C++LR + PI++LT+L + I LE+GA DY++K P L AR+R LR+ ++ T Sbjct: 68 CQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADKIT 127 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 G+ + + + G L ID R V N + L+ +F LL L + AG+ R Sbjct: 128 TNLGVPNSGI-----ISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFSR 182 Query: 184 DALLKNLRGVSYD-GLD-RSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++L+ + G + + +D R VDV ISRLR KL D+ + P I T R GYLF Sbjct: 183 ASILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 128/234 (54%), Gaps = 16/234 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ +ED+ V ++ + K + G + + EN DL++LDIMLP DG+TI Sbjct: 3 ILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVTI 62 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE--- 120 CR +R + PI++LT+ D++ + ++ EMGA DY+ K P L+AR++ +R+ + Sbjct: 63 CRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKATG 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEI-SLSTADFELLWELATHAGQ 179 +A + + + ET TI+ R V L + +L+ +F+LL+ L + Q Sbjct: 123 KAVIDEDMIETE----------CFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQ 172 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + R+ LL+ + G + G +R+VDV I RLRKKL + +P+ + TV GY F Sbjct: 173 VFSREQLLEQVWGYQFYGDERTVDVHIKRLRKKLA-SEDKPF-LYTVWGVGYKF 224 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +TI+ V+D+ + ++ L K QV GD A ++ DL +LDIM+PG +G Sbjct: 6 STILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGY 65 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR+LR + + P++ L++ DS+++ ++ LE+GA DY+ K L+AR+R Sbjct: 66 ELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVR-------- 117 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 A L +G + +++ G +T+D + N I L+ +FELL L AG++ Sbjct: 118 ALLRRGQMDAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVA 177 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LL+ G Y ++VD I RLR KL +P I+TVR GY F Sbjct: 178 SREDLLREAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRF 229 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 121/235 (51%), Gaps = 14/235 (5%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 T+ VEDDA++ L+ +L V G+ + P+L LLDIM+PG DG+ Sbjct: 3 QTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGADGL 62 Query: 62 TICRDLRAKWS---GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 ICR +R S P++ LT+ S+ + I L++GA DYI K P L+AR++ LR+ Sbjct: 63 EICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLRR 122 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 E+ P + G + ID +T+ ++ + +F LL LA H G Sbjct: 123 FERPL-----------PPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPG 171 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ RD LL + ++ RSVDV + R+R+K+ +N +P +KTVR GY F Sbjct: 172 RVFTRDQLLDAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRF 226 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/228 (34%), Positives = 113/228 (49%), Gaps = 12/228 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD + +I L + G QA E PDLVLLD+MLPG DG+ + Sbjct: 34 ILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSDGIEV 93 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR +R + PIV+LT+ + + LE GA DY+ K PA L+AR+R LR +Q Sbjct: 94 CRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLRPGDQKA 153 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + L +TID +VT ISL+ +F+LL LA Q+ R Sbjct: 154 ------------PETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQVFTR 201 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 + LL+ + G + R V+V + RLR K+ + P + TVR GY Sbjct: 202 ELLLEQVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGY 249 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 9/234 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+D+ ++ +++ +YL K +V G +A + +E PDL++LD M+P G+ + Sbjct: 5 ILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGIEV 64 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 R++R K PI++LT+ +++ ++ E G DY++K L AR++ L++ E T Sbjct: 65 LREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKRLEAKT 124 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + +E LT G LT+ P R V L + L+ +F+LL + G+ R Sbjct: 125 IN---EEIVLTE------GDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAYSR 175 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 LL+ G +Y+G +R++D IS LRKK+ + A P I+TV GY P Sbjct: 176 LELLEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPRG 229 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 126/233 (54%), Gaps = 8/233 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 TI+ V+D+ + +LI L + + QV G A E + + D V++D+MLP DG+ Sbjct: 4 TILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGIE 63 Query: 63 ICRDLRA-KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + +R PI++LT+ S ++ IL LE+GA DYI K P LL+R+++ LR+ ++ Sbjct: 64 ATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTDR 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 A L E T L + ID VV N +I L+ +F+LL L +A Q++ Sbjct: 124 AI---NLAEIDPT----LQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQVL 176 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 RD +L+ + G Y G R VD+ IS LR KL ++ P IKT+R GY F Sbjct: 177 SRDQILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFV 229 >UniRef50_Q398T9 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q398T9_BURS3 Length = 395 Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 128/231 (55%), Gaps = 7/231 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 IV ++D+AE+ +++ +L H QV G + + + RE DL++LD+M+ +DG+++ Sbjct: 165 IVVLDDEAELRNMLQRFLTGHGFQVRAVADGKRLDRLLQREPYDLLVLDLMMEPEDGLSV 224 Query: 64 CRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 CR LRA+ PI++LT+ + ++ LE GA DY+ K P L+AR+R LR+ + A Sbjct: 225 CRRLRAEGQTLPILMLTAKGDAADKVVGLETGADDYLAKPFLPDELVARVRALLRRQKMA 284 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 E ++T + L FG T D + + T + + +A LL L + + + Sbjct: 285 A-----GEPTVTSQR-LRFGAFTFDVGQQTLMRDGTPVEIHSAQMLLLHALGSSPNRAVS 338 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LL RG + LDRSVDV I RLR+ + D+ +P IKTV GY+ Sbjct: 339 RENLLARARGRDHAALDRSVDVQILRLRQIVEDDPGKPRFIKTVWGIGYML 389 >UniRef50_B9E984 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9E984_MACCJ Length = 223 Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 125/232 (53%), Gaps = 18/232 (7%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N I+ V+D+A + + +H QV V GD+A + E+ DL ++DIM+PG DG Sbjct: 3 NNILVVDDEAAIRCEVKEGFLRHSFQVYVASNGDEAINLLDNESIDLCIVDIMMPGIDGF 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C ++ + P+++LT+ D+ + +A + G+ DY+ K ++ R + L++ E+ Sbjct: 63 QLCEQIKQDYQLPVIMLTARDALGDKRIAFQAGSDDYVTKPFEIEEVIFRAQAILKRYEK 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 A + + FG L ID + VT+ + + L +FELL+ L H ++ Sbjct: 123 AV-------------EKVEFGKLIIDADSYEVTMEDESLYLPRKEFELLYYLVRHYPKVA 169 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKL--LDNAAEPYRIKTVRNKGY 231 R+ L++ + G +DG +R+VDV + R+RK+L D+ E I+TVR GY Sbjct: 170 TREQLIEEIWGYDFDGDERTVDVHVKRIRKRLDAFDSGVE---IQTVRGVGY 218 >UniRef50_C4ZP42 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C4ZP42_THASP Length = 242 Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 132/234 (56%), Gaps = 11/234 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 T++ V+DD + + AY +K +V + G+ + + DLVLLDI LPG+DG++ Sbjct: 10 TLLVVDDDLVAQARMNAYFSKEGYRVLLAGDGESFWRQLAQGEVDLVLLDINLPGQDGLS 69 Query: 63 ICRDLRAK-WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R+LRA+ S I+L+TS + D++ I+ LE+GA DY+ K P LLAR++ LR++ Sbjct: 70 LARELRARDASIGIILVTSRNDDVDKIVGLEVGADDYVTKPFNPRELLARVKSLLRRSAT 129 Query: 122 ATLTKGLQETSLTPYKALHFGTLTID-PINRVVTLANTEISLSTADFELLWELATHAGQI 180 ET+ +L F ++ R+ A +++L+ +FE+L L H G+I Sbjct: 130 RP-----AETA----DSLRFAGWVLELSRRRLRDRAGQDVALTRGEFEVLALLVRHPGEI 180 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 +DRD L + + G + DRSVDV + RLR KL D A I T+R +GY A Sbjct: 181 LDRDRLSRAVSGHDWSPQDRSVDVLVRRLRAKLDDPARTDSLIATIRGEGYRLA 234 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 81/239 (33%), Positives = 125/239 (52%), Gaps = 11/239 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 TI+ +EDD E+ ++ YL + +V + G+ +P L+L+D+MLP DG Sbjct: 15 TILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDGFE 74 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR +R + PI+++++ SD++ I +L +GA DYI K P L+AR++ HLR+ + Sbjct: 75 VCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYHRY 134 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 GL+E K L F LTI+ R+V ++L+ +FELL LA GQ+ Sbjct: 135 N---GLKEQE----KVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFS 187 Query: 183 RDALLKNLRGVSYDGLD--RSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 ++ L R D D R+V V I +R+KL D + P I TV GY F E Sbjct: 188 KEQLYN--RVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIGQKHE 244 >UniRef50_B3E8G4 Two component transcriptional regulator, winged helix family n=4 Tax=Desulfuromonadales RepID=B3E8G4_GEOLS Length = 233 Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 121/231 (52%), Gaps = 8/231 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDD ++ +I AYL D +V A E E P V+LD+ LP K G + Sbjct: 5 ILIVEDDLKIARIIKAYLEGADFRVIHADTARAALEKAEAELPLAVILDLGLPDKSGEEL 64 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C++L+ S P+++LT+ S+ I +GA DY++K P L+ R++ L++ + A Sbjct: 65 CQELKDLGSFPVIMLTAKSSEEERITGFALGADDYVVKPASPRELVYRVKAVLKRYDGA- 123 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 G E ++ + GTL +D VT S++ +F+LL LA G+ R Sbjct: 124 ---GAGEHPIS----FNNGTLILDSRRHTVTCRGESCSVTPTEFKLLQALAASPGRTYSR 176 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 D L+ G +DG +RSVD I LR+K+ ++ +P IKTV GYLF+ Sbjct: 177 DELVSKALGYQFDGYERSVDAHIKNLRQKIELDSRKPEFIKTVYGIGYLFS 227 >UniRef50_B6ITF9 TorCAD operon transcriptional regulatory protein TorR n=1 Tax=Rhodospirillum centenum SW RepID=B6ITF9_RHOCS Length = 241 Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 122/229 (53%), Gaps = 8/229 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ VED+ +L+AAY + + G Q E +LR+ PDLVLLDI LP +DG +I Sbjct: 10 VLIVEDEPATRALLAAYFHEAGFLIAEAENGRQTREALLRQPPDLVLLDIELPDEDGFSI 69 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 R +R + I+++T+ ++ + + LE G DY+ K P LLAR R LR+ + Sbjct: 70 ARSIREISNVGIIIVTNRANEDDRVFGLETGGDDYVTKPPNPRELLARARNLLRRTHPSK 129 Query: 124 LTKGLQETSLTPYKALHFGTLTID-PINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + E ++ FG T+D R++ EI ++ +FELL L G+++ Sbjct: 130 MRRA--EGTVR-----RFGGWTMDLARRRLIDPEGQEIRVTRGEFELLALLVRSGGRVVT 182 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 RD L+ + G + DR++DV +SRLR+K+ D P I T + GY Sbjct: 183 RDQLIDAVSGTDRNPNDRTIDVLVSRLRRKMCDTGVSPRLILTEKGLGY 231 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 11/234 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ VED+A + I L +V G+ A + PDLV+LD+MLPG DG+ + Sbjct: 8 VLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLEV 67 Query: 64 CRDLRAKWSGP-IVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 C+ +R P I++LT+ D + I+ LE+GA DY++K P L+AR++ LR+ ++ Sbjct: 68 CQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR- 126 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 E T Y +G+L +D + N E+ L+ ++ LL + G+ + Sbjct: 127 ------YEAGRTGYT---YGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKALR 177 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R+ +L + G Y G +++DV I RLR+K+ DN ++P IKT+ GY + P Sbjct: 178 REEMLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 126/232 (54%), Gaps = 7/232 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+D+A + ++ L+ V G++A +E PD+V+LDIM+P DG + Sbjct: 17 VLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYGV 76 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C+++R PI++LT+L + I LE+GA DY++K P L AR+R LR+ +A Sbjct: 77 CQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNKAA 136 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + + LT ++F LTID R + N I L+ +F LL L + +GQ R Sbjct: 137 FS-----SHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFSR 191 Query: 184 DALLKNLRGVSYD-GLD-RSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 +L+ + G + + +D R VDV ISRLR KL + + P I T R GYLF Sbjct: 192 ADILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 80/231 (34%), Positives = 126/231 (54%), Gaps = 8/231 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+D+ + + L + QVT G +A + DL++LD+MLPG DG Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +TICR++RA PI++LT+ D++ IL LE+GA DYI K L+AR+R LR+ E Sbjct: 61 LTICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 A+ Q+ + L G L + P R +A + L+ +++LL LA H G + Sbjct: 121 AAS----RQDRA----GRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVV 172 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 R LL + G + G +R+VDV + R+R+KL ++ + P ++T GY Sbjct: 173 YTRQELLDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGY 223 >UniRef50_Q0BQV4 Two-component response regulator n=10 Tax=Alphaproteobacteria RepID=Q0BQV4_GRABC Length = 253 Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 127/233 (54%), Gaps = 9/233 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDD + LI L ++ + + G + +I + PDL+L+D+MLPG G + Sbjct: 22 ILVVEDDPGMRVLIMRVLRENGFRTSAVRDGREMWPSIEQLMPDLILMDVMLPGGSGFDL 81 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C+ LR PI+++++ +M+ +L LE+GA DYI K LLAR+R LR+ Sbjct: 82 CKALRQSSQVPIIMVSARGEEMDRVLGLELGADDYIAKPFGKQELLARVRAVLRRGPVNE 141 Query: 124 LT-KGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQIM 181 T KG ET + F ID R +T + + LS A+++LL +A +++ Sbjct: 142 PTAKGKSET-------ISFAGWQIDMKRRELTDPSGAVVDLSGAEYDLLLSFLENAQRVI 194 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 RD LL+ R D DRS+DV +SRLR+K+ + E I+T+R GY+FA Sbjct: 195 GRDRLLELSRTRLGDVSDRSIDVLVSRLRRKIGNRVGERPLIRTIRGVGYMFA 247 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 123 bits (308), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 126/235 (53%), Gaps = 9/235 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ +DD + +++ L + +V G+QA + PD+V++DIM+P DG+ Sbjct: 4 GTILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGL 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + ++ K PI++L++ D ++ I+ +MG DY K PA L R++ LR+++ Sbjct: 64 EASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKA 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 KG L + I+ R+V + E++L+ +F++LW +A+H QI Sbjct: 124 VPEKKGKD--------VLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIF 175 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF-AP 235 R LL+ + ++G + +V V I RLR+K+ +AA+P IKTV GY F AP Sbjct: 176 SRLQLLEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEAP 230 >UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax=Actinobacteria (class) RepID=CSEB_STRAW Length = 235 Score = 122 bits (307), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 122/230 (53%), Gaps = 7/230 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++FVEDD + L + VT P G E PD+ LLD+M+PG DG+++ Sbjct: 7 VLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRANRPDIALLDVMVPGLDGVSL 66 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR +R + + P+++L++ ++ +L LE GA DY+ K AVL+AR+R LR+ A+ Sbjct: 67 CRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGHAS 126 Query: 124 L--TKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 ++ +++S L FG L ID V + ++L+ + LL E ++ G ++ Sbjct: 127 GPNSRPAEDSSAPDGGVLTFGELEIDTEGMEVRRSGQPVALTPTEMRLLLEFSSAPGTVL 186 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 RD LL+ + + G R VDV + RLR K+ + RI TVR GY Sbjct: 187 SRDKLLERVWDYGWGGDTRVVDVHVQRLRTKIGQD-----RIDTVRGFGY 231 >UniRef50_C5CP31 Two component transcriptional regulator, winged helix family n=3 Tax=cellular organisms RepID=C5CP31_VARPS Length = 249 Score = 122 bits (306), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 127/238 (53%), Gaps = 17/238 (7%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAK--HDMQVTVEPRGDQAEETILRENP-DLVLLDIMLPG 57 M I+ ++DD + + + Y A+ + ++ V P A+ LR P D +LD+MLP Sbjct: 18 MPRILLIDDDEHLAAPLTTYFARFGYTLESAVRPSEGLAK---LRAGPFDAAILDVMLPE 74 Query: 58 KDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 DG +CR++R + PIV+LT+ M+ ++ LE+GA DY+ K P L+AR++ LR Sbjct: 75 MDGFALCREIRKESDIPIVMLTARGEVMDRVVGLELGADDYVPKPFEPRELVARVQTILR 134 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + T + T ++ F L+ID R V + L+ +FELL LA Sbjct: 135 RQRS---TPAAANGNGTQHRV--FDGLSIDLDRRQVLRHGERVELTGTEFELLALLAAEP 189 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYR-IKTVRNKGYLFA 234 G++ RD +L LRG + R+VD+ +SRLRKKL EP IKT+RN GY A Sbjct: 190 GKVFSRDDILNRLRGHEAELYTRAVDIVVSRLRKKL-----EPLDCIKTLRNAGYALA 242 >UniRef50_D2B5L0 Response regulator receiver protein n=15 Tax=Actinomycetales RepID=D2B5L0_STRRD Length = 238 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 78/229 (34%), Positives = 124/229 (54%), Gaps = 5/229 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 +++ VEDD + +A L ++ +V+V G E DL+LLD+MLP DG+ Sbjct: 11 SLLLVEDDEVIRRTVAMTLERYGYEVSVAGDGLTGLELFRDGRHDLLLLDVMLPALDGIG 70 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR +R PI+++++ + + LE GA DY++K AVL+AR+R LR+ A Sbjct: 71 LCRRVRESSVVPILMMSARGDSPDVVSGLEAGADDYVVKPVDTAVLVARIRSLLRRAAFA 130 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 ++ S +L FG L+IDP V A ++L+ + LL E A + G ++D Sbjct: 131 PPAPPAEQPSEPAGASLVFGDLSIDPQGLEVRRAGEPVALAPTELRLLLEFAANPGIVLD 190 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 R LL+++ +DG R VD+ + RLRKK+ + RI+TVR GY Sbjct: 191 RQTLLRDVWDYGWDGDSRVVDLCVQRLRKKIGAD-----RIETVRGFGY 234 >UniRef50_UPI0001692EE0 response regulator n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692EE0 Length = 230 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 120/230 (52%), Gaps = 7/230 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 IV ++ D E + +L +H VTV +QA I +E+PDL++L++ LP +G+ I Sbjct: 6 IVVIDSDPEAVDELKPHLLEHAYDVTVARTWEQAVHLIPKESPDLIILELALPDVNGLEI 65 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR LR S PI+ L+S D I AL+ GA +YI K P LLAR+R LR+ T Sbjct: 66 CRFLRQSSSTPILFLSSQKDDSVIIEALDQGADEYITKPYNPGQLLARIRALLRRCSIRT 125 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 G + + F L+ID + +V +SLS +F LL LA++ + Sbjct: 126 SNSGEN-------RVIRFPGLSIDLASHMVEAQGETVSLSAKEFALLSLLASNPNHVFRI 178 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + L + + V G R++ V +S LRKK+ N A+P I TVR GY F Sbjct: 179 EELFEKVWSVDSLGDPRTLIVHVSNLRKKIEPNPADPKYIITVRGVGYKF 228 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 81/233 (34%), Positives = 125/233 (53%), Gaps = 13/233 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+D+ ++ L+ L + QV G++A E +L PDLV+LD+MLPG DG+ + Sbjct: 6 ILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDGLEV 65 Query: 64 CRDLRAK---WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 R +R PI++L++ + + I LE+GA DYI K P +L+AR+R LR+ + Sbjct: 66 ARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLRRQQ 125 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + P + + +TI P V + +I L+ ++F++L LA+ G + Sbjct: 126 A-------KAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGLV 178 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R ++ +RG Y DRSVDV IS LRKKL D I+TVR GY F Sbjct: 179 FTRWQIVDKIRGEHYAVTDRSVDVLISGLRKKLEDYGE---YIETVRGVGYRF 228 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 121/233 (51%), Gaps = 10/233 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 T+ VED+ + ++ AYL K +V G + I NPD V+LD+MLP G Sbjct: 4 TVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEE 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 IC+ +R PI++L++ S+ + I + +GA DY+ K P ++ RL LR+ Sbjct: 64 ICKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRR---- 119 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T+ L + + + + ID I + V L N ISL+ +F ++ +A H G++ Sbjct: 120 --TRTLNKMEIFSFNKKE---IIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFS 174 Query: 183 RDALLKNLRGVS-YDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R LL+ ++ S ++G +RS+DV I LRKKL N +P I TV GY F Sbjct: 175 RADLLQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKFG 227 >UniRef50_UPI0001C36ECD response regulator n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C36ECD Length = 226 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 121/234 (51%), Gaps = 11/234 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ +EDD E+G+L+ +L + ++ V + + + E L+LLD+MLP KDG Sbjct: 1 MKDILMIEDDPELGTLVRDFLCRAELSVDLFGDAESGIAALGNETYRLILLDVMLPKKDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 T C +LR K+ P++++++ D D + + GA DYI K VLLA++R ++ Sbjct: 61 YTFCSELRKKYDTPVLMMSARDDDQSKLTGYGTGADDYITKPFSIPVLLAKIRALMK--- 117 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 +A + E S +T+D N VV T I L+ ++ELL + H G+I Sbjct: 118 RAVVKPENHEISGC--------GITLDMQNHVVRKNGTVIKLNVKEYELLRTMMEHQGEI 169 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 MD++ L + G +V V I LR+K+ D+ EP I+TV GY F Sbjct: 170 MDKNKLFDTVWGFDCFSEPSTVSVHIRWLREKIEDDPNEPKIIQTVWKAGYRFG 223 >UniRef50_A8SYK9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A8SYK9_9FIRM Length = 253 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 17/234 (7%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHD---MQVTVEPRGDQAEETILRENPDLVLLDIMLPG 57 +N I+ VEDD + +I Y + M V V GD ++ + E DLVLLDIMLPG Sbjct: 29 LNKILLVEDDIHISEVIHDYFVRESGGQMYVEVAYNGDDGLDSFMMETFDLVLLDIMLPG 88 Query: 58 KDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 DG +CR++R PI+ LT+ DS+ + +L ++G DYI+K A L A+ + ++ Sbjct: 89 MDGFAVCREMRRNSMVPILFLTARDSERDIMLGYDLGCDDYIVKPFSLATLYAKCKALIK 148 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 ++ + T + G L G ++++P + + E+ L+ +F +L L + Sbjct: 149 RS-KGTDSNG----------ELVCGAISMNPSRYMTKVNGVEVDLAPKEFAILKILLENK 197 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 G+++ R+ LL ++ G Y+G DR VD + +LR + + +IKTV KGY Sbjct: 198 GKVITRERLLVDIWGYDYEGSDRCVDNHVRKLRAGI---GSAGKQIKTVIGKGY 248 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 5/232 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VEDD + +I YL K V+ G A ET L+ DLVLLD+MLPG DG Sbjct: 4 KKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGY 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+ +R PI++LT+ + L +GA DY+ K LLAR+ LR+ EQ Sbjct: 64 QVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQ 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 +E + L + L D ++ L I++ + +LL L + Q+ Sbjct: 124 DH-----EEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVF 178 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ L++ + G ++G DR +D+ I RLRK+L + + IKTV GY F Sbjct: 179 KREELIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKF 230 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 79/231 (34%), Positives = 124/231 (53%), Gaps = 3/231 (1%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VED+ +V L+A L QV + G A ++I E +L +LDIMLP DG Sbjct: 1 MRKILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + + +R K S P+++LT+ D+DM+ ++ +GA DYI+K L AR++ LR+ E Sbjct: 61 SEVLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T + E + LH G+L I+ V + ISL +F LL LA ++ Sbjct: 121 G---THHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRV 177 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 + + +++ G + D +V V ISRLR K+ ++ A P R++TVR GY Sbjct: 178 VTIAQIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGY 228 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 7/233 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 + I+ +D+ V I YL +M G +A E E PDLV+LD+M+P G Sbjct: 4 IKKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFG 63 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+++R + PI++LT+ +++ I+ LE+GA DYI+K P ++ R++ R+ Sbjct: 64 TEVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVG 123 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 A + L K + F ID + L +I ++ + ++L+ LAT+ G++ Sbjct: 124 NANIDTNLNR------KLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRV 177 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + R+ +L + G Y G R VD I R+RKK+ + E + IKTV GY F Sbjct: 178 LSREEILDKVWGYDYFGDTRVVDTQIKRIRKKIPE-EGEKWSIKTVYGIGYKF 229 >UniRef50_A1B7Z0 Two component transcriptional regulator, winged helix family n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1B7Z0_PARDP Length = 255 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 125/237 (52%), Gaps = 8/237 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGK-DG 60 I+FVEDD ++ + + Y + V G + + DLV+LD+ LPG+ DG Sbjct: 24 QRILFVEDDRKLSAFLCRYFTEQGYLVEAAHDGAAMRRALAAKGFDLVVLDVGLPGREDG 83 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + R+L+ + I+ L++ ++ I+ LE+GA D+++K P LLAR+R LR+ Sbjct: 84 YVLARELKKERDIGILFLSARQDALDRIVGLEIGADDFLVKPFEPRELLARIRAILRRLP 143 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEI-SLSTADFELLWELATHAGQ 179 T + + + F +D RV+ A + +L+T +F LL LA G+ Sbjct: 144 AGTARPRGEG------RRIGFDGWLLDLDARVLRDAQGGVQNLTTQEFNLLSVLAQRPGR 197 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 ++ RD LL + DRSVDV I ++R+K+ DN EP RI+T+R GY+F+P Sbjct: 198 VLSRDQLLDLTVSRHWSPYDRSVDVMIGKIRRKIGDNGPEPRRIRTIRGTGYMFSPE 254 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 80/234 (34%), Positives = 123/234 (52%), Gaps = 8/234 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILR-ENPDLVLLDIMLPGKDGMT 62 I+ V+D+ E+ L+ L V+ G+ A + + E P+L+LLDIM+P G Sbjct: 5 ILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNMSGYE 64 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE-- 120 +C +R +W PI+ L++ ++ ++ E+GA DYI K LLAR+R HLR+ E Sbjct: 65 LCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRRYERI 124 Query: 121 -QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + T + +ET+ +P L F L I V + N +I LST +F+LL LA +AG Sbjct: 125 RKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAENAGI 184 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + R+ + + G Y L+ +V V I LR+KL E IKT GY+F Sbjct: 185 VFTREQIYDRVWGYGYGSLN-TVTVHIKNLREKL---ETERQFIKTQWGTGYVF 234 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 120/232 (51%), Gaps = 12/232 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+DDA + ++ L + + G++A + PD+VLLD+MLPG++G+ I Sbjct: 18 VLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQI 77 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C+D+R + + PIV+LT+ ++ + LE GA DY+ K P L+AR+R LR+ E Sbjct: 78 CQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGETGQ 137 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + L G + ID VT I+L+ +F+LL LA Q+ R Sbjct: 138 ------------AENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFTR 185 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + LL+ + G + R V+V + RLR K+ + +P + TVR GY P Sbjct: 186 ELLLEQVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYKAGP 237 >UniRef50_A9ASF4 Two component transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=A9ASF4_BURM1 Length = 253 Score = 120 bits (302), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 129/231 (55%), Gaps = 6/231 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+DD + L++ YL+ +D++VTV G + + DLV+LD+ +PG+DG+ I Sbjct: 9 VLVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILDLRMPGEDGVQI 68 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 R+LR + + PI +++ + + ++ALE+GA DY+ K LLAR+R LR+ Sbjct: 69 ARELRTRSNLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRAGATA 128 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQIMD 182 G + + +A F ++ R +T A T + L+ +F LL G+++ Sbjct: 129 PATGRAKDA----RAYRFSGWELNVGTRRLTDPAGTPVELTNGEFCLLNAFLAAPGRVLS 184 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD LL++ R + D DRS+DV I RLR+K+ + + P I+TVR GY+ Sbjct: 185 RDQLLESSR-LYDDVYDRSIDVQILRLRRKIEPDPSHPVFIRTVRGAGYVL 234 >UniRef50_A9AVR8 Two component transcriptional regulator, winged helix family n=6 Tax=Chloroflexi (class) RepID=A9AVR8_HERA2 Length = 248 Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 121/231 (52%), Gaps = 8/231 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ +DD + L+ L+ Q+ G +A + L+L+D+M+P DG T+ Sbjct: 21 ILVADDDPAILRLVEVALSGQRYQLVTVSNGLEALKMYRDGEYQLLLIDVMMPYIDGFTV 80 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 +RA+ PI+++T+ D + + E+GA DYI K A L AR+ +R+ E Sbjct: 81 TERIRARSDVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRRVE--- 137 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 G Q +P + G L ID V LA +++L+ +FELL+ LA ++GQ+ DR Sbjct: 138 ---GYQHRKASP--IVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQVFDR 192 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + L + + G Y G VDV + RLR+K+ + ++P RI TVR GY A Sbjct: 193 EVLFREVWGYEYVGQTNLVDVCVRRLREKIEEQPSKPRRILTVRGVGYKLA 243 >UniRef50_B7K2G1 Two component transcriptional regulator, winged helix family n=3 Tax=Cyanobacteria RepID=B7K2G1_CYAP8 Length = 239 Score = 120 bits (301), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 130/234 (55%), Gaps = 16/234 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD + L++ +L+ ++ Q+ Q + + +PDLV+LD+ LP + G T+ Sbjct: 10 ILIVDDDPAICQLVSRFLSYNNYQIKTAENAYQGRQLFEQLSPDLVILDVNLPDESGFTL 69 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHIL-ALEMGACDYILKTTPPAVLLARLR--LHLRQNE 120 C+++R +G +VL+ + +D N+IL GA DY+ K A+L A++ L+ RQ Sbjct: 70 CQEIRH--TGTLVLMLTCMTDTNYILEGFAKGADDYLTKPFNLAILKAKITALLNRRQLG 127 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 TL G L F L+I+ VTL N I L+T +FELL LATH +I Sbjct: 128 NNTLETG--------KNTLVFDGLSINVETAEVTLNNQVIPLTTLEFELLHFLATHPNKI 179 Query: 181 MDRDALLKNL-RGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 +R AL++ + R G DR VDV I ++RKK+ D E IKTVR +GY+F Sbjct: 180 WERGALIEQVWRENQEIGADRKVDVHIGQIRKKIDD--LEGRLIKTVRGRGYMF 231 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 6/232 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M TI+ V+D+ + +L+ L + +V G QA L++ D ++LD+MLP DG Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 61 MTICRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + + + +R AK PI++LT+ D++ + I+ LE+GA DY+ K P ++AR+R R+ Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 Q + + +++ S T + G L++D + + ++ L+ +FELL + Sbjct: 121 TQP-IEQPVEQASET----IVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNK 175 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 + R+ LL + G Y R VD+ +S LR+K+ DN P +KTVR GY Sbjct: 176 VQSREKLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGY 227 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 80/243 (32%), Positives = 127/243 (52%), Gaps = 21/243 (8%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I +EDD ++ L+ K V P G A E I +E PD+V+LD+M+P DG Sbjct: 1 MALIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDG 60 Query: 61 MTICRDLRAKWS---GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 + C+ +R+ P+++LT+ ++++ I+ LE+GA DY+ K LLAR++ LR Sbjct: 61 LEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLR 120 Query: 118 QNEQATLTKGLQETSLTP-YKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATH 176 + +K L + P YK FG L I P VT+ + L+T F+LL L Sbjct: 121 R------SKSLHFPTAKPEYK---FGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNS 171 Query: 177 AGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 G+++ RD +++++ D DR++DV I +LR+ L + IKT+R GY Sbjct: 172 QGKVLSRDYIIEHVWAWDKDVYDRTIDVHIKKLRELLKEYGN---CIKTIRGVGY----- 223 Query: 237 AWE 239 WE Sbjct: 224 KWE 226 >UniRef50_B1ZLF1 Two component transcriptional regulator, winged helix family n=23 Tax=cellular organisms RepID=B1ZLF1_METPB Length = 291 Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/238 (31%), Positives = 127/238 (53%), Gaps = 7/238 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I V+D+A+ +++ YL H V + G + PDL++LD+ +P +DG++I Sbjct: 52 IAVVDDEADARAMVGDYLRLHGFDVALCEGGRALRAHLQIRTPDLIVLDLNMPEEDGLSI 111 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE--- 120 RD++A+ PI++LT+ S ++ ++ LE+GA DY+ K L+AR+R LR+ + Sbjct: 112 VRDMKARSPIPIIMLTATASPIDRVVGLELGADDYLPKPCELRELVARVRSVLRRAQGAP 171 Query: 121 -QATLTKGLQETSLTPYKALHFGT--LTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + + FGT L +D + R+ A E L+ ++F+LL A H Sbjct: 172 PPPPAQPTPAPEPAACARTIRFGTKWLELDAL-RLRDDAGVEQPLTRSEFDLLKAFADHP 230 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + + R+ LL D DR++DV I+R+RKK+ + A P I+TVR GY+F P Sbjct: 231 KRALSRERLLDLADARDPDAFDRAIDVRINRIRKKVEPDPANPRFIRTVRGLGYIFRP 288 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 122/232 (52%), Gaps = 10/232 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+DD V ++ YL + V + G+ A PDLV+LD+MLPG G+ + Sbjct: 11 VLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLEV 70 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR LR + P+V+LT+L + + ++ LE GA DY++K P L+ R+ LR+ + Sbjct: 71 CRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTSQ 130 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 +G + L G L +D R TL E++L+ +F+LL L H G+ R Sbjct: 131 PAEG---------EVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFSR 181 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 LL+ + G S+ G +V V + RLR+K+ + A P RI TV GY + P Sbjct: 182 AELLEQVWGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYDP 232 >UniRef50_A5W315 Two component transcriptional regulator, winged helix family n=27 Tax=Proteobacteria RepID=A5W315_PSEP1 Length = 253 Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 123/233 (52%), Gaps = 3/233 (1%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ V+DD E+ +++ YLA+ Q G++ E L N +V+LD+MLPG G Sbjct: 21 MIPVLLVDDDRELTEMLSLYLAREGFQAMAVDTGEEGETQALSGNFQVVVLDVMLPGISG 80 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + + R +RA+ P++LLT+ +++ I LE+GA DY+ K + P L+ARLR LR+ + Sbjct: 81 IEVLRRVRARSQVPVLLLTARGDNIDRIAGLELGADDYVPKPSSPGELVARLRAILRRVK 140 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + G P + + G L + P R + L+ ++F LL LA AGQ+ Sbjct: 141 PHLM--GDTSAPEVP-EQVRSGALKMWPGRREARWGTATLELTGSEFSLLEVLARQAGQL 197 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + + L N G DR +DV +S +R+KL A I++VR GY+ Sbjct: 198 VSKQDLSLNALGRPLTRYDRRIDVHVSSIRQKLGPRADGSSWIQSVRGMGYML 250 >UniRef50_A4ZV27 RsrR n=2 Tax=Acidithiobacillus caldus RepID=A4ZV27_9GAMM Length = 238 Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 122/230 (53%), Gaps = 4/230 (1%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD + SL+ A+L + V G + + DL++LD+ LP +DG+ I Sbjct: 9 ILVVDDDLRLRSLVEAHLRQVGFTVDGVRDGQGLDHKLHGGEVDLIILDLGLPDEDGLQI 68 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C+ LR + PI++LT+ +++ IL LEMGA DY+ K P L+AR++ LR+ + Sbjct: 69 CQRLRLTYDTPILILTARGDEVDRILGLEMGADDYLSKPFHPRELIARVQAILRRTK--P 126 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + +G Q P + G +D + + + LS ADF+ L L H GQ + R Sbjct: 127 MNRGRQHAD-EPEICMK-GAFVVDTRRQKILWRGEPLELSQADFQTLSTLIKHEGQPLSR 184 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + L+ RG +Y DRS+D+ ISRLRK L I+TV GY+F Sbjct: 185 ERLMLLSRGRTYASDDRSIDMQISRLRKLLDSKTDGAQHIRTVWGSGYMF 234 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 122/236 (51%), Gaps = 11/236 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 TI+ EDD ++ LIA +L K Q+ G +A + DLV+LDIM+P DG Sbjct: 7 TILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGYE 66 Query: 63 ICRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R +R ++ PI+ L++ SD + I L MGA DY+ K P LLAR+ LR+ Q Sbjct: 67 VVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFRQ 126 Query: 122 ATLTKGLQETSLTP---YKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 L + P A+ G LTID R VTL N I L+ +F++L+ LA+H Sbjct: 127 ------LNQPVAAPTHAASAIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPK 180 Query: 179 QIMDRDALLKNLRGVS-YDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ + + + + G + Y+ +V V I LRKKL ++ IKTV GY F Sbjct: 181 KVFSAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAF 236 >UniRef50_B6IYL9 Two-component response regulator GltR n=1 Tax=Rhodospirillum centenum SW RepID=B6IYL9_RHOCS Length = 262 Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 83/251 (33%), Positives = 123/251 (49%), Gaps = 20/251 (7%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDD + +L+ L+ V P G +A E + PDL ++D+ LP DG+ + Sbjct: 6 ILLVEDDDAIRALVIRVLSGAGFTVEEAPSGSRAMEVVADTRPDLAIVDLGLPDMDGLAV 65 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 R+LR + +++L+ M I+ LE+GA DY+ K P LLAR++ LR+ E A Sbjct: 66 VRELRQRLRCGVIILSGRSDPMERIIGLEVGADDYVPKPFEPRELLARVKSVLRRLEPAG 125 Query: 124 LTKGLQETSL---------TPYKA----------LHFGTLTIDPINRVVTLAN-TEISLS 163 + TP A F T+D ++ + L+ Sbjct: 126 PDRPAPPAPAAPAPPLPENTPATAPVGPDGGGPVYRFEGWTLDSRGHMLIRPDGGHEDLT 185 Query: 164 TADFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRI 223 T +F LL L AG+++ RD LL G + DRSVDV I+RLR+K+ + P I Sbjct: 186 TGEFTLLLALVERAGRVLSRDQLLDVTHGHNTPAFDRSVDVQIARLRRKIQRDPDAPPVI 245 Query: 224 KTVRNKGYLFA 234 +TVRN GYLFA Sbjct: 246 RTVRNAGYLFA 256 >UniRef50_A3W0Y1 DNA-binding response regulator TorR n=2 Tax=Roseovarius RepID=A3W0Y1_9RHOB Length = 233 Score = 119 bits (299), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 80/230 (34%), Positives = 122/230 (53%), Gaps = 8/230 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 IV +ED+ + +A YL H VT ++A+ + + DL+L+DI L GKDG+ I Sbjct: 7 IVIIEDEPVTRTTLAEYLRSHGYTVTAFDSAEKADPMLASDRADLLLVDITLDGKDGLQI 66 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 R+ RA+ I+L TSL D++ I+ LE+GA DY+ K LLAR++ LR+ E A Sbjct: 67 TREQRARSDIGIILTTSLSDDVDRIVGLELGADDYVCKPFNRRELLARIKNLLRRTE-AQ 125 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 Q Y A F T +++ I ++ A+FE+L EL H G+++ R Sbjct: 126 RRFSRQNVRFHGY-AFAFAT------RQLIAPDGEPIRITRAEFEVLAELLRHPGEVLGR 178 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + L+ + R+VDV I RLR KL ++A+ P I T +GY+F Sbjct: 179 ERLMTVITHRQQHPDTRTVDVIIRRLRTKLEEDASAPRFITTAHGEGYVF 228 >UniRef50_A4XD98 Response regulator receiver n=3 Tax=Actinomycetales RepID=A4XD98_SALTO Length = 228 Score = 119 bits (299), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 76/230 (33%), Positives = 118/230 (51%), Gaps = 18/230 (7%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ VED+ + L+ YLA+ V +E GD R P + +LDI LPG G I Sbjct: 11 VLLVEDEPAIADLVRLYLARDGFGVHLERDGDAGLAAARRLRPVVCVLDIALPGLPGTEI 70 Query: 64 CRDLR--AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 CR LR W+ P++ LT+ D +++ I+ LE+GA DY+ K P L+AR+R LR+ Sbjct: 71 CRRLREAGDWT-PVIFLTARDDEVDRIVGLELGADDYVTKPFSPRELVARVRAVLRRV-- 127 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 P + G +T+DP R VT A + L++ +F+LL L G++ Sbjct: 128 ---------AGPPPGRPRIVGGVTLDPDRRTVTAAGDPVQLTSTEFDLLAHLMARPGRVF 178 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 R+ LL + G + R+VDV ++++R KL + I+T R GY Sbjct: 179 TREELLAGVWGYAVPAGTRTVDVHVAQVRAKLGPESV----IRTHRGVGY 224 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 119 bits (299), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 119/235 (50%), Gaps = 24/235 (10%) Query: 7 VEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTICRD 66 VEDD+++ L+ L D V V G + E + + +L++LD+MLP DG ICR Sbjct: 11 VEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEICRR 70 Query: 67 LR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 LR A S PI++LT+ + + + +L L++GA DY+ K P LAR+ LR+ Sbjct: 71 LRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTDYN 130 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 P L+F TLTI P + + + L+ +FELL LA +AG+ + R Sbjct: 131 ----------QPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTLKR 180 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 + LL+ + G Y G R++D I RLR+K+ + EP GY F W Sbjct: 181 EQLLEQVWGYEYPGSTRTIDEHIKRLRQKI--SQLEP---------GYTFVQTVW 224 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 121/236 (51%), Gaps = 8/236 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ +DDA + LI Y +V G +A E + + PD+V+LD+M+P DG Sbjct: 1 MVKLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + +R K S P+++LT+ D++ IL LEMGA DY+ K P LLAR++ Sbjct: 61 FETLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIK------- 113 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 A L + QE P + + + +R V L + L+T+++ LL + GQ+ Sbjct: 114 -AILRRASQEREDDPTADIDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQV 172 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 + + L + G DRS+D+ IS LRKK+ + RIKTVR GY+F + Sbjct: 173 LTKQELSEKALGRKLTMYDRSLDMHISNLRKKIGNLENGDPRIKTVRGVGYIFVSN 228 >UniRef50_C0QDS5 Two-component response regulator (OmpR-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QDS5_DESAH Length = 226 Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 118/210 (56%), Gaps = 11/210 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ VED++++ ++ YL + +V++ RGD+ + +N ++LLDIMLP DG T+ Sbjct: 6 VLIVEDESDIAEILKDYLIREGYRVSILDRGDEVVSFVKTQNLSMILLDIMLPRLDGKTV 65 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR++R PI+++T+ +++ I+ E+G DYI K P ++AR+ LR+ T Sbjct: 66 CREVRKFSDVPIIMITAKVEEVDRIIGFELGVDDYICKPFSPREVVARVNAVLRR----T 121 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 K + L G + ++ +R+ + E+SL+ ++F++ L ++ R Sbjct: 122 FKKSSDD-------VLALGPVQLNKTSRIAEINGNELSLTPSEFDIFSVLLESPNRVFTR 174 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKL 213 L++ ++G +YDG +R++D I LRKK+ Sbjct: 175 AQLIEKVQGYNYDGYERTIDFHIKNLRKKI 204 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 119 bits (298), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 121/235 (51%), Gaps = 1/235 (0%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ V+D+ + +L+ L + V G A I + D+VLLD+MLP G Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 61 MTICRDLRA-KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + + +R + P+++LT+ D++ + + LEMGA DY+ K P ++AR+ LR+ Sbjct: 61 EEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRY 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 E++ + + G TID V++ + + L+ +FEL+ L H Q Sbjct: 121 EKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQ 180 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ RD LL+ + G Y G R VD+ I+ LR+K+ + P +KT+R GY F+ Sbjct: 181 VLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFS 235 >UniRef50_Q488W3 DNA-binding response regulator n=3 Tax=Alteromonadales RepID=Q488W3_COLP3 Length = 260 Score = 119 bits (298), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 121/231 (52%), Gaps = 13/231 (5%) Query: 14 GSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTICRDLRA-KWS 72 LI +L++ D+ + +G++A + L ++ L+LLD+MLPG G+ ICR +R K Sbjct: 15 AKLIKVHLSELDLNCDICTQGNEALQQALTKDYQLILLDVMLPGISGLDICRQVRQEKPL 74 Query: 73 GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ------------NE 120 I++LTS S+++ IL LE+GA DY+ K L AR+R LR+ N Sbjct: 75 QSIIMLTSKTSEIDRILGLELGADDYMTKPFSVRELQARVRSQLRRVHAITAKNASEINS 134 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 K +QE++ + G L +D VT N I+L+ +FEL+ H Q+ Sbjct: 135 LVHEEKPVQESAQLDKTSTSIGQLLVDHRFHQVTYKNKAINLTVTEFELIDFFCQHPDQV 194 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 R LL + G ++G + +V+ I+RLR KL ++ EP I+TV GY Sbjct: 195 FSRAQLLDGVWGYHHNGYEHTVNSHINRLRSKLEEDCTEPKIIQTVWGVGY 245 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 119 bits (298), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 121/231 (52%), Gaps = 6/231 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ ++D+ + L L + QV G + + PDLVLLD+MLP G Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+++ + + P++++++ D ++ +L LE+GA DYI K L+AR+++ LR+ E Sbjct: 61 YDLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 K T L G L I+P +VV T+I L+ ++ +L L +I Sbjct: 121 HNDEAKYEYTTKLV------CGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKI 174 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 RD LL+ + G Y G RSVD+ I RLRKK+ +++ P +KT+ GY Sbjct: 175 FTRDELLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGY 225 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 8/234 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDD ++ + YL + +V G ++ DL+LLDIMLPG DG Sbjct: 1 MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR+LR P++++T+ +++ + L +GA DYI+K P L+AR+R H+ + E Sbjct: 61 FAVCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYE 120 Query: 121 QATLTKGLQETSLTPYK-ALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + S+ P + + G L I V L E+ + +FELL LA H Sbjct: 121 RIL-------ASVKPEQHVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNI 173 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + R+AL + + G G +V V I+R+R+K+ ++ A P ++T+R GY F Sbjct: 174 VFSREALFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/237 (30%), Positives = 121/237 (51%), Gaps = 7/237 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDM-QVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+ + ++ L K + +T G + I D++LLD+MLP DG Sbjct: 19 ILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDIDGFE 78 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR +R + PI+ +T+ SD++ + L +G DYI K P + AR+ + LR+ Sbjct: 79 LCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQHMT 138 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 QE + LHF + ++ P ++T+ N + + + ELL L TH +I Sbjct: 139 ------QEPNNGEKLNLHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIFT 192 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 + L + + G++ G D++V + IS+LRKK+ +N P I +R GY F PH E Sbjct: 193 AEQLYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFIPHTKE 249 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 77/231 (33%), Positives = 134/231 (58%), Gaps = 4/231 (1%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M+ I+ VED+ ++ SL+A YLAK Q T+ G + T+ ++ DL+LLD+MLPGKDG Sbjct: 1 MSHILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +TICR+++ + I+++T+ +++ +L LE+GA DYI K P ++AR++ LR+ Sbjct: 61 LTICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRR-I 119 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 LT G+ T++ K T+ ++ N T+ + L+ +F LL LA+ G+I Sbjct: 120 NPPLTTGIN-TNIA--KQSQTTTVELNTDNYQATINQHPVELTAIEFNLLNILASAPGRI 176 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 R L+ + + +R++D I +LRKKL ++ +++V + GY Sbjct: 177 YSRSQLIDRVYQDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGY 227 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 126/232 (54%), Gaps = 5/232 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N I+ VEDD E+ L+ ++ + +V G A E ++ DL+LLD+ +P +G+ Sbjct: 8 NQILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGV 67 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR+LR + PI+++T+ +++ +L LE+GA DYI K L AR + +R+++ Sbjct: 68 EVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDA 127 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 A Q+T+ + L FG L ++ R VTL +I LS +F+LL LA + G+ Sbjct: 128 AN-----QQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSY 182 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R LL + G ++ G + +V+ I+RLR K+ + P I T GY F Sbjct: 183 SRSELLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRF 234 >UniRef50_Q1GLX1 Two component transcriptional regulator, winged helix family n=1 Tax=Ruegeria sp. TM1040 RepID=Q1GLX1_SILST Length = 238 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 124/230 (53%), Gaps = 2/230 (0%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ +D+ + +++ YL + +V D + PD+V+LDI +PG DG+T Sbjct: 10 ILVCDDEHHLREMLSEYLCERGYEVMEAENADAMLAVFNDDTPDVVVLDINMPGTDGLTA 69 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 R LR + P+++L++ ++ I+ LEMGA DY+ K L AR++ LR+ A Sbjct: 70 LRTLRVNSTIPVIMLSAAGEVVDRIVGLEMGADDYLAKPVDLRELEARIKAALRRQGFAG 129 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + Q +T L +D ++ + EI++++ +F LL A + G++++R Sbjct: 130 -EESAQRDRMTGTVPFGMCRLDLDGA-KLFGESGEEIAITSMEFSLLRVFAQNRGRVLNR 187 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 D LL+ ++ DRS+D+ ISRLR+K+ N +P I+TVR GY+F Sbjct: 188 DQLLEQAHDRGWEHFDRSIDLRISRLRRKIEQNPTKPETIRTVRGIGYIF 237 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 120/231 (51%), Gaps = 5/231 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 +I+ +D+AE+ LI +L K V G++A I + DLV+LDIM+P DG Sbjct: 5 SILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKMDGYE 64 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 + R +RAK PI+ L++ SD + + L +GA DY+ K P L+AR+ LR+ Sbjct: 65 VTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRRFLTL 124 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 K + S AL G + IDP R V + +I L+ +F++L+ LA+H ++ + Sbjct: 125 NQPKVAESKS-----ALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPKKVYN 179 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + + + + Y +V V I LRKKL ++ + IKTV GY F Sbjct: 180 VENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >UniRef50_A9WLJ1 Two-component response regulator n=4 Tax=Actinomycetales RepID=A9WLJ1_RENSM Length = 248 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 119/234 (50%), Gaps = 8/234 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENP-DLVLLDIMLPGKD 59 M I+ VEDD + + L++ QV G + +NP +L++LD+MLP D Sbjct: 18 MAKILIVEDDPNINAAFKLALSQRGPQVEGCFLGAEGVIAARSQNPPELIVLDLMLPDLD 77 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G ++CR +R PI+++T+ D + ++ LE GA DY++K PA+L AR+ LR+N Sbjct: 78 GFSVCRAIRQTSLVPIIMMTARSDDADIVVGLEAGADDYVVKPVDPAILDARILAVLRRN 137 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + + + G L ID V+ N + LS + LL EL H GQ Sbjct: 138 N-------FEGEAADKADVVINGALRIDRSALSVSKNNAPLPLSPTEIRLLLELLQHPGQ 190 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + R+ LL+++ G Y R VD +I RLR K D+ + P + TVR GY F Sbjct: 191 VRSREQLLRSVWGAEYLLDSRMVDASIQRLRSKNEDDPSNPQIVVTVRGFGYRF 244 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 126/236 (53%), Gaps = 5/236 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ +D+ E+ L+ YL + V G++A + +LV+LD+M+P DG+ + Sbjct: 6 VLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGIEV 65 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR LR + PI++LT+ D +++ I+ L +GA DYI K ++AR++ +R+ Sbjct: 66 CRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFLVLG 125 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 QE ++ L F LTID +VT+ + EISL+ + ELL A++ Q+ + Sbjct: 126 SNANTQEKTI-----LTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFTK 180 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 L +N+ +Y D +V V I +LRKK+ + + P I+TV GY F +E Sbjct: 181 TQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGEKYE 236 >UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmicutes RepID=C9YME3_CLODR Length = 247 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 15/237 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 MN I+ ++DD E+ +LI + +++ G + + + + LV+LD+M+PG DG Sbjct: 18 MNKILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 77 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLAR----LRLHL 116 ++R ++S PI++ TS + ++ + L GA DY+ K L+AR +R + Sbjct: 78 FETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYT 137 Query: 117 RQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATH 176 R N+QA + L+F L ID NR T +N L +F+LL A H Sbjct: 138 RFNQQAGAI-----------QKLNFDGLQIDLENRSATTSNGTFELPPKEFDLLLYCAKH 186 Query: 177 AGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 G+I+ + + + + G Y D ++ ISRLRKKL N + P I+TV+ GY F Sbjct: 187 QGKILTKQQIYEEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRF 243 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 81/236 (34%), Positives = 119/236 (50%), Gaps = 15/236 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 + I+ VEDDA + L+ LAK + G +A T P LV+LD+MLPG DG Sbjct: 30 HKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGF 89 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR---- 117 +CR +R + S PI++LT+ S+ + + LE GA DY+ K LLAR++ LR Sbjct: 90 ELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 QN Q T GL+ G L I +V + S +F+L + + Sbjct: 150 QNSQTETTGGLK-----------IGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNR 198 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ R+ LL+ + G Y G R+VDV IS LR+K+ + + P + TVR GY F Sbjct: 199 CRVFSREQLLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKF 254 >UniRef50_C6BZU5 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BZU5_DESAD Length = 232 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 128/235 (54%), Gaps = 11/235 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 MN I+ ++DD E+G L++ YL + + + + + DL+LLDI+LP G Sbjct: 1 MNKILLIDDDPEMGELLSTYLDGEGYSLHHKCTAKEGLKAFGSDEYDLILLDIVLPDISG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + + +R + P+++LT +++ ++ LEMGA DYI K P LLAR+R LR Sbjct: 61 LNVLEKIRLDSTVPVIMLTGKGDEVDRVVGLEMGADDYICKPFPLRELLARMRASLR--- 117 Query: 121 QATLTKGLQETSLTPYK--ALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 + ++T Q S+TP L G L I+ + + + E + A+F ++ LA G Sbjct: 118 RCSMTP--QSHSITPSSRGKLKVGELDINLDSHAIMVKGIETHFTAAEFSIVEHLAASCG 175 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++++RD L++ G S D D ++V +S LR+K+ D+ + IKT+R +GY+ Sbjct: 176 KLIERDELMEIALGRSADFDDYVLNVHMSNLRRKIGDSVS----IKTIRGRGYMM 226 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 12/231 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+D+ ++ ++ A+L KHD + + G +A + NPDL++LD+MLP G + Sbjct: 5 ILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGEEV 64 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C+ +R PI++LT+ ++ + + GA DY++K LLAR++ LR++ Q Sbjct: 65 CQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQKA 124 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLAN-TEISLSTADFELLWELATHAGQIMD 182 ++ + Y+ G L I P NR+ L N + L+ +F +L L + GQ+ Sbjct: 125 -----EKAEIFVYQD---GRLKIHP-NRMKVLVNGRDADLTRTEFNILVTLIRNPGQVFT 175 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ L K + G+ Y G DR++D I +RKKL N + I TV GY F Sbjct: 176 REQLAKKVMGLEYKGYDRTIDAHIKNIRKKL--NLEKNQLIITVYGVGYKF 224 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 8/232 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDD +AAYL K +V+ GD + ++ DL+LLDI LPG DG+ + Sbjct: 6 ILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGVDGLQL 65 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 R++R + ++++T D +++ I+ALEMGA DY+ K LLAR + LR+ A Sbjct: 66 LREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRTLSA- 124 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLAN-TEISLSTADFELLWELATHAGQIMD 182 +E S + F T+D R + + +++ L+ +FELL A+ G++M Sbjct: 125 -----REASEDENQK-SFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRVMT 178 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 RD LL + + DR+VDV + RLR+K+ + P I TV GY+FA Sbjct: 179 RDNLLDYVSHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVFA 230 >UniRef50_D1AJ61 Two component transcriptional regulator, winged helix family n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AJ61_SEBTE Length = 219 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 127/233 (54%), Gaps = 16/233 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ VED+ ++ L+ Y + + +V+ G A E + E D+VLLDI +P DG Sbjct: 1 MLKLLIVEDEKKIRELLKIYFLRENYKVSEAENGRIALEMMKEETFDIVLLDIYMPELDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 CR++R + P+V+LT+L D + +LA E+GA D+I+K +LLA++R R +E Sbjct: 61 FDTCREIRKTSNVPVVILTALSDDESQLLAYEIGADDFIIKPFKKDILLAKIR---RISE 117 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + ++ + YK FG L ID + + + + E+ + +FE+L L + G I Sbjct: 118 RISVNQ-------HSYK---FGGLEIDKDSYRILVDSREVKFAPKEFEILLYLIENKGVI 167 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD +L ++ G + DR VD I ++RKKL D + +KTV + GY F Sbjct: 168 KSRDDILIHIWGYDSEVFDRVVDNHIKKIRKKLGDYSD---YVKTVVSIGYKF 217 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 17/231 (7%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+D+ ++ +++ YL K +V+ G++ + + DLV+LD+MLP KDG Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +I R+++ P+++LT+ D + + EMGA DYI K VLLAR++ LR+ Sbjct: 66 WSILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLRK-- 123 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T + E+ + G L I+ + V+ + EI L+ +++LL L + Sbjct: 124 ----TNNMVES------IIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIA 173 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 + R+ LL + G + G DR++D I LRKK+ NA IKT+R GY Sbjct: 174 LSREKLLNEVWGYDFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGY 219 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 16/234 (6%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 +++ +EDD + LI Y+ K V G+ E+ PD + LDIMLP DG Sbjct: 7 SVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGWE 66 Query: 63 ICRDLRAKWSG---PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 +C+++R W PI++LT + I L++GA DY++K P L+AR++ +R+ Sbjct: 67 LCQEIR--WDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRA 124 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + L Q SL L +D + EI++ + +LL+ LA++ Q Sbjct: 125 D--LLNDEDQVVSLL--------GLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQ 174 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + R LL + G +++G R++DV I R+R+KL + A+ + IKT+R GY F Sbjct: 175 VFTRQQLLDQIWGYAFEGDPRTIDVHIKRIREKLTEADAK-WTIKTIRGVGYKF 227 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 83/235 (35%), Positives = 121/235 (51%), Gaps = 10/235 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+D+ + LI L V G+ E + PDL++LD+MLP DG+ + Sbjct: 5 ILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGIQV 64 Query: 64 CRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 CR+LR + + PIV+LT+L + I L+ GA DY+ K P L++R++ R+ + Sbjct: 65 CRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQ-- 122 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 TL + T+ G LT+ R V + I L+ +FELL L H G+++ Sbjct: 123 TLPGQAESTTFD------IGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKVLS 176 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY-LFAPH 236 R LL + + G R VDV IS LR K+ NA P I TVRN GY L AP+ Sbjct: 177 RQQLLHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHAPN 231 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 72/235 (30%), Positives = 114/235 (48%), Gaps = 9/235 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M TI+ V+D+ + + YL + G++A I PDL+LLDI +PG DG Sbjct: 1 MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + +CR++R++ S P++ L+ S M+ + E+GA DY+ K L AR++ ++R Sbjct: 61 LEVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYA 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 ++G L +G L IDP + ISL+ + +LL A H Q+ Sbjct: 121 MNPSSEG---------PKLRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQV 171 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + L + + G +V V IS LR+K+ P I+TVR GY F P Sbjct: 172 WTHEQLYDRIWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVP 226 >UniRef50_A3JEV6 Two comoponent transcriptional regulator, winged helix family protein n=2 Tax=Marinobacter RepID=A3JEV6_9ALTE Length = 228 Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 123/235 (52%), Gaps = 16/235 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N ++ +EDD E+ L+A YL V G E+ D+V+LDIMLP +G+ Sbjct: 3 NRVLLIEDDDELRMLLARYLVTQGFTVREAANGKDGLALARSESCDIVVLDIMLPDINGL 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ--- 118 + R LR P++LLT+ + + I+ E+GA DYI K P L+ARL LR+ Sbjct: 63 DVLRQLRVSAHLPVILLTAHGDETDRIVGFEVGADDYISKPCNPRELVARLHALLRRIAW 122 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 +++A L + +G L ++P +R V T + L+ ++E+L L HAG Sbjct: 123 DQKADLD-----------DSRSYGDLRLEPDHRRVRQNGTPLDLTATEYEVLQVLLAHAG 171 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ + L++ G + DR++D+ IS LRKKL EP RI+TVR GY + Sbjct: 172 SVVRKTDLMQWALGRRLETYDRTLDMHISNLRKKL--GNEEPPRIETVRGLGYSY 224 >UniRef50_Q07HV3 Two component transcriptional regulator, winged helix family n=8 Tax=Proteobacteria RepID=Q07HV3_RHOP5 Length = 245 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 125/236 (52%), Gaps = 2/236 (0%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+D E+ + YL ++ M+ + + + + DL++LD+M+PG+DG++ Sbjct: 10 ILVVDDHREIRDAVTKYLERNGMRASAASNTVEMDAQLKAGRFDLIILDVMMPGEDGLSA 69 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 R L A P+++L++L + + ++ LE+GA DY+ K P LLAR++ LR++E+ Sbjct: 70 ARRLSAGGGPPVLMLSALSEETDRVVGLEIGADDYLAKPFSPRELLARIKAILRRSERRE 129 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 G + T T D + A +I+L+TA+F+LL ++ R Sbjct: 130 PLAGTLGGRKLGFAGWMLDTDTRDLVREADGAA--KIALTTAEFKLLVAFLERPRFVLTR 187 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 + LL G S + DR++D +SRLR+K+ D+ A P I TVR+ GY A E Sbjct: 188 EQLLDITSGRSAEVFDRTIDNQVSRLRRKIEDDPAHPKIITTVRSGGYSLAADVRE 243 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 77/227 (33%), Positives = 124/227 (54%), Gaps = 3/227 (1%) Query: 5 VFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTIC 64 + VED+ E+ +++ +YL + +V + G +A + +PD+V+LD+ LPG DG+ +C Sbjct: 67 MVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVC 126 Query: 65 RDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQATL 124 R LR +V+LT+ +++ ++ L +GA DY+ K P LLARL+ LR+ T Sbjct: 127 RRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRRPRPKT- 185 Query: 125 TKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDRD 184 G + T L FG L+ID R V L + + L+ +F+LL LA + R Sbjct: 186 --GQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRR 243 Query: 185 ALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 L+ + G + G + VDV I LR+KL D+A+ ++TVR GY Sbjct: 244 QLIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGY 290 >UniRef50_A9D5A2 Osmolarity response regulator n=1 Tax=Hoeflea phototrophica DFL-43 RepID=A9D5A2_9RHIZ Length = 235 Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 76/233 (32%), Positives = 125/233 (53%), Gaps = 9/233 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 + ++ V+DD E+ +L+ +L++H + G + + R D ++LD+M+ G+DG+ Sbjct: 6 DRVIVVDDDPELRTLLRRFLSEHGFETRAVDGGTALDRELSRSPADAIVLDLMMSGEDGL 65 Query: 62 TICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ICR LRA PI++LT+ ++ I+ LE GA DY+ K P L+ARL LR+ Sbjct: 66 AICRRLRAAGDQTPIIMLTARGDPIDRIVGLETGADDYLAKPFEPRELVARLSAVLRR-- 123 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T+G+++ + G L I+ R+VT + LS+ +F LL + G+ Sbjct: 124 ----TRGMRDVPTD--DTVTIGPLEINFSTRMVTRDGASLKLSSREFALLAAMVRSRGRP 177 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + R L++ G + DR+VDV I+RLR+ L D A + IKTV GY+ Sbjct: 178 LSRAQLIERALGRDAEVTDRAVDVQIARLRRALGDRADDAGLIKTVWGVGYVL 230 >UniRef50_A6VRR3 Two component transcriptional regulator, winged helix family n=2 Tax=Gammaproteobacteria RepID=A6VRR3_MARMS Length = 243 Score = 117 bits (293), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 129/234 (55%), Gaps = 8/234 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+D + + + +Y A+ V+ + AE+ + + DL+LLDI LPGKDG+T+ Sbjct: 8 ILVVDDSSVIRETLESYFAEEGYTVSGADTAEAAEQLLSEQEFDLILLDIRLPGKDGLTL 67 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR--QNEQ 121 R+LR++ I+L+T D++ I+ LE GA +Y+ K +LAR + +R +N++ Sbjct: 68 TRELRSRSEVGIILVTGKQDDIDRIIGLECGADEYVCKPFNAREVLARGKNLIRRVRNQR 127 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEIS-LSTADFELLWELATHAGQI 180 K ++E GT +D RV+ ++ +S L+ +F+LL L + G Sbjct: 128 ELAKKPIEEPVFRT-----IGTWQLDTSRRVLLKSDRSVSQLTEGEFQLLLALKANEGVA 182 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + RD L+ ++ +++ DR++DV I R+R+KL ++ P I TV GYL + Sbjct: 183 LTRDQLMDRIKNRTWNATDRTIDVLIGRIRRKLSEDPHCPQMIITVHGVGYLLS 236 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 116/232 (50%), Gaps = 16/232 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I VED+ + + L + +E G +A E I++ N DLVLLD+MLPG DGMTI Sbjct: 7 IFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMTI 66 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ----N 119 C+ +R S PI++LT+ D + + L++GA DY+ K L+AR+R LR+ N Sbjct: 67 CKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVPDN 126 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 L + LQ +L Y P V + + L+ ++ LL + + Sbjct: 127 GGVPLEERLQVKNLVMY-----------PKRYEVEVDGETVHLTKKEYSLLEYMMRNKRT 175 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 ++ RD +L+ + G Y G VDV I LR KL D E Y I TVR GY Sbjct: 176 VLTRDQILEKVWGYDYSGDTNVVDVYIRYLRAKLDDRFHEKY-IYTVRGVGY 226 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 78/228 (34%), Positives = 116/228 (50%), Gaps = 11/228 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ VEDD V + + YL V G A + R +PDL++LD MLPG DG + Sbjct: 42 VLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGSEV 101 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR +R++ PI+LLT++ S I LE GA DYI K P L+ R+ Q+ Sbjct: 102 CRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRV--------QSI 153 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 L + + + LTP G T+D + A E++L+ +F+LL L H GQ R Sbjct: 154 LRRSIGD--LTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAFSR 211 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 + LLK++ G + L +V V + RLR+K+ + P + TV GY Sbjct: 212 EQLLKSVWGWEFGDLS-TVTVTVRRLREKIETDPTHPTILATVWGVGY 258 >UniRef50_Q04942 Transcriptional regulatory protein afsQ1 n=34 Tax=Actinomycetales RepID=AFSQ1_STRCO Length = 225 Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 122/235 (51%), Gaps = 12/235 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M +++ +EDD + + + L + +V G+ + + + PDL++LD+MLPG DG Sbjct: 1 MPSLLLIEDDDAIRTALELSLTRQGHRVATAASGEDGLKLLREQRPDLIVLDVMLPGIDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR +R PI+LLT+ + D++ ++ LE GA DY++K VL AR+R LR+ E Sbjct: 61 FEVCRRIRRTDQLPIILLTARNDDIDVVVGLESGADDYVVKPVQGRVLDARIRAVLRRGE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + + FG+L ID VT ++ L+ + LL EL+ GQ Sbjct: 121 RES------------TDSASFGSLVIDRSAMTVTKNGEDLQLTPTELRLLLELSRRPGQA 168 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + R LL+ + Y G R VD + RLR K+ D + P I+TVR GY P Sbjct: 169 LSRQQLLRLVWEHDYLGDSRLVDACVQRLRAKVEDVPSSPTLIRTVRGVGYRLDP 223 >UniRef50_Q15TH0 Two component transcriptional regulator, winged helix family n=5 Tax=Gammaproteobacteria RepID=Q15TH0_PSEA6 Length = 244 Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 124/229 (54%), Gaps = 6/229 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENP-DLVLLDIMLPGKDGMT 62 I+ V+DD + SL++ +L + +V G+ A E +L+ + D V+LDIM+PG G+ Sbjct: 8 ILLVDDDETLCSLLSEFLQEEGFEVETLHSGNAATERLLQSDEFDTVVLDIMMPGMSGLD 67 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 + R +RAK PI++LT D++ I+ LEMGA DY+ K P L AR++ +R+ E + Sbjct: 68 VLRSVRAKRQVPILMLTGRGDDIDRIVGLEMGADDYLGKPCNPRELSARIKAIIRRTENS 127 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 G T AL G + +D R + NT + L++A+F L L AGQ + Sbjct: 128 L---GNGAAGKTIVHALLHG-IELDTGTRTAVVNNTTLPLTSAEFNALSLLMERAGQTIT 183 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 + + + + + DR++DV ISR+R+KL IK++R GY Sbjct: 184 KQDMTQEVLNRPLEAYDRAMDVHISRIRQKLSSQGINDV-IKSIRGVGY 231 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 117 bits (292), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 72/236 (30%), Positives = 123/236 (52%), Gaps = 16/236 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ VED+ E+ L+ YL +V++ G +A E+ L+ P+L++LD+M+P DG Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +TICR +R + PI+++T+ +++ +L L MGA DY+ K P L+AR++ LR+ + Sbjct: 61 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLD 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + K E + ID + + ++L+ +F LL H GQ+ Sbjct: 121 R----KAEPEQN---------DLFRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQV 167 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYR---IKTVRNKGYLF 233 R LL ++ S+D DR +D I LR+K+ + A R ++ V GY F Sbjct: 168 YSRAQLLDHINPDSFDVADRVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRF 223 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 116 bits (291), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 82/230 (35%), Positives = 125/230 (54%), Gaps = 7/230 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ +ED+ + L++ L +V VE G ET LR++ DL+LLD+MLPG +G I Sbjct: 5 LLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGFEI 64 Query: 64 CRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 LR++ P+++LT+ +++ + L+ GA DYI K A LLAR+ LR+ + Sbjct: 65 MSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRR---S 121 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T + ++ + + G LTI P VTL I+L +FE+L LA G +M Sbjct: 122 TGKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVVMT 181 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKL-LDNAAEPYRIKTVRNKGY 231 RD L+ + G Y G R+VDV +S LRKKL LD + I ++R GY Sbjct: 182 RDDLMNAVWGFDYIGGQRTVDVHVSSLRKKLELD--PQSVHIDSIRGVGY 229 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 116 bits (291), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 81/235 (34%), Positives = 125/235 (53%), Gaps = 5/235 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 TI+ VED ++ ++ L+ QV G A + PDLV+LD MLP DG+ Sbjct: 7 TILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGLE 66 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 + R +R S P+++LT+ + + ++ LE+GA DY+ K L+AR+R LR++++ Sbjct: 67 VLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQR- 125 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + LQ + + L +G L +DP +V L E+ L+ +F +L L + G+ Sbjct: 126 -IQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAFS 184 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R+ LL + G SY G DRSVD A+ RLRKKL D I+TV GY A Sbjct: 185 RNYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA---IETVWGLGYRLQAEA 236 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 116 bits (291), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 65/228 (28%), Positives = 123/228 (53%), Gaps = 13/228 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD + L++ +L + Q G A + I D+V+LDIM+P DG + Sbjct: 34 ILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGFDV 93 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C +LR + PI++LT+ + +G DY++K P L+ R++ L++ + Sbjct: 94 CFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQ--- 150 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 +T +++ GT+ ++ VT+ ++L +FELL+ L + AG+ R Sbjct: 151 ---------ITVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTCSR 201 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 + L++++ G ++G +R++DV I+RLR+K + ++ + IKT+R GY Sbjct: 202 EQLIEDVWGYDFEGNERTLDVHINRLREKFQEEKSK-FSIKTIRGLGY 248 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 70/232 (30%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ VED+ ++ ++I YL+ H + G +A + PD V+LD+ LP DG+ Sbjct: 5 NVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDCDGIE 64 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 ICR +R + I++L++ SD + +L L GA DY+ K + L+AR+ HLR+ ++ Sbjct: 65 ICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRRQDRW 124 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 +Q+ LH + I+ + N I LS +FELL+ LA + Q+ Sbjct: 125 LQDHDVQK------DVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRNQVFS 178 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + LL + G G + ++ V I R+R+K+ N + P ++TV GY F+ Sbjct: 179 KSQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKFS 230 >UniRef50_A7ZAG8 MrsR2 n=2 Tax=Bacillus RepID=A7ZAG8_BACA2 Length = 240 Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 72/234 (30%), Positives = 121/234 (51%), Gaps = 11/234 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDM-QVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 N I+ V+DD + +L+ K ++ G + I +E P+++LLD+MLP DG Sbjct: 6 NKILMVDDDEHILNLLITCFEKEGFSNISTAMTGSETLLKIDQELPNIILLDVMLPDTDG 65 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 T+C +R+ + PI+ LT+ +D++ + G DYI K P ++AR++ Sbjct: 66 FTLCSKIRSHTNVPILFLTAKTTDLDKLQGFSFGGDDYITKPFNPLEIVARVK------- 118 Query: 121 QATLTKGLQETSLTPYKALH-FGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 A L + Q +S P K ++ + IDP + + T I + +LL H Q Sbjct: 119 -AQLKRMTQLSSSYPLKQVYDYEYFKIDPNTGRLVVNGTRIDCPAQEMKLLIYFCEHPNQ 177 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 I+ + + K++ G Y G D +V V + RLR+KL ++ + P IKTVR +GY+F Sbjct: 178 ILSKHQIYKDVWGEFYGG-DSTVMVHVRRLREKLEEDPSRPRWIKTVRGQGYIF 230 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/242 (32%), Positives = 122/242 (50%), Gaps = 24/242 (9%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEP---------RGDQAEETILRENPDLVLL 51 M I+ V+D+ + +++ YL V+ R AE DLVLL Sbjct: 1 MTRILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPV------DLVLL 54 Query: 52 DIMLPGKDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLAR 111 D+M+PG DG+ + R LR ++L+T+ +++ ++ L +GA DY+ K P + AR Sbjct: 55 DVMMPGMDGLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTAR 114 Query: 112 LRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLW 171 ++ LR+ T T P L F LT+DPI R +T+ + L+ +F+LL Sbjct: 115 VKSVLRRRRDGT-------TGDDPR--LRFDELTVDPIGREITVDGAPVRLTALEFDLLH 165 Query: 172 ELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 L G++ R LL+ + G + G +R VDV I LR +L D+A +P+ I TVR GY Sbjct: 166 ALVRAPGRVFSRAQLLEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGY 225 Query: 232 LF 233 F Sbjct: 226 KF 227 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 118/233 (50%), Gaps = 12/233 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ VEDD + I YL + G +A+ LR PDLV+LD MLPG DG+ Sbjct: 13 AILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLA 72 Query: 63 ICRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C R ++ P+++LT+ + + + AL GA DY+ K L+AR++ LR+ Sbjct: 73 LCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRR--- 129 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 G ++ S L +D R V L I L +F+LL +LA H G++ Sbjct: 130 -AYASGYRDCSPK-------NGLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVY 181 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 RD LL+ + G ++G R++DV + +LR+KL + P + TV GY FA Sbjct: 182 SRDELLERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFA 234 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 120/231 (51%), Gaps = 5/231 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+D+ + L+ +LAK + G A RE D ++LDIMLP DG+ + Sbjct: 12 VLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGIEV 71 Query: 64 CRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 C+ LR+K S PI+++++ + + +LALE+GA DY+ K P LLAR++ LR+ E Sbjct: 72 CKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTEAE 131 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 G E P+ + L + P V + L+ ++ELL L H + Sbjct: 132 ISGDG--EEHREPFYTM--SQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMTLT 187 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LL+ + G + R VDV I +LR+K+ DN P I+T+R GY F Sbjct: 188 RERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKF 238 >UniRef50_D1AFR9 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=D1AFR9_SEBTE Length = 221 Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 124/233 (53%), Gaps = 24/233 (10%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VED+ + ++ L + + ++ G A + NPDLVLLDI LP KDG TI Sbjct: 5 ILIVEDEVNLMEVLEDTLLEENFEIFKAYEGSAAIDMFYEVNPDLVLLDINLPKKDGWTI 64 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR-QNEQA 122 C+++R + PI+++T+ D++++ + L +GA DYI K +L R++ L+ +NE Sbjct: 65 CKEIRNDSNKPIIIMTARDTELDELKGLSIGADDYITKPFSLKILTLRIKKLLKIENEDY 124 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 L + L+ +FGT + ++ N EI+ + F L + + G+++ Sbjct: 125 YLYETLR---------FNFGTYEL-----IIDSQNIEITKKESLF--LDYIIKNKGKLLT 168 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYR--IKTVRNKGYLF 233 RD LL + G +DG +R VD I R RKKL PY IKTVR GY+F Sbjct: 169 RDMLLNEVWGYDFDGDNRVVDTLIKRTRKKL-----SPYGDLIKTVRGMGYMF 216 >UniRef50_Q1J3D6 Two component transcriptional regulator, winged helix family n=4 Tax=Deinococci RepID=Q1J3D6_DEIGD Length = 244 Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 17/232 (7%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 T++ V+DD + ++ YL + +V G QA L D+ +LD MLPG G+ Sbjct: 17 TVLIVDDDPAILEILRVYLRQDGFRVLEAREGAQA--LSLLPQADVAVLDWMLPGMTGLE 74 Query: 63 ICRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R A + P+++LT+ D + + +L LE GA DY+ K P ++ARL++ LR+ Sbjct: 75 LARRAHATFPEVPLLMLTARDGEEDKLLGLEGGADDYVTKPFSPREVVARLKVLLRR--- 131 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 G++E + G L +D R TL + LS +F+LL+ LA + G Sbjct: 132 ----MGVREV-------IEHGELHLDVRARAATLRGEALGLSKLEFDLLFTLAQYPGLAW 180 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LL+ + GV Y ++R VDV I+ LR+KL D+A P I+TVR GY F Sbjct: 181 TRERLLERVWGVDYPRMERVVDVHITGLRRKLGDHAEHPRYIETVRGVGYRF 232 >UniRef50_B1WTP9 Two-component response regulator n=12 Tax=Cyanobacteria RepID=B1WTP9_CYAA5 Length = 248 Score = 116 bits (290), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 128/232 (55%), Gaps = 12/232 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD + LI+ + + ++ + A + + NPDL +LD+ LP + G + Sbjct: 21 ILIVDDDPAICQLISRFFSYNNYYIESAVDAKTARQLFQKFNPDLAILDVNLPDESGFNL 80 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHIL-ALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 C+++R +G +VL+ + +D +H+L E GA DY+ K +L A++ L++ Sbjct: 81 CKEIRQ--TGTLVLMLTCMTDTSHVLEGFEQGADDYLTKPFNLEILKAKIAALLKRR--- 135 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 G + TP ++ LTIDP V+L + + L++ +FELL+ LATH ++ + Sbjct: 136 ---NGGEVNLNTPNNSVSIEGLTIDPNRCEVSLNHEVLPLTSLEFELLYFLATHPNRVWE 192 Query: 183 RDALLKNLRGVSYD-GLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R L+ + G ++ G +R VDV I ++RKK+ N + IKTVR KGYLF Sbjct: 193 RSDLIAAVWGNHHEIGAERKVDVHIGQIRKKI--NDIQGKLIKTVRGKGYLF 242 >UniRef50_P76340 Probable transcriptional regulatory protein yedW n=131 Tax=Proteobacteria RepID=YEDW_ECOLI Length = 223 Score = 116 bits (290), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 118/230 (51%), Gaps = 14/230 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ +ED+ + L++ + G L+++ L++LDIMLPG DG I Sbjct: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKDDYALIILDIMLPGMDGWQI 62 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 + LR P++ LT+ DS + + L+ GA DY++K + LLAR+R LRQ+ Sbjct: 63 LQTLRTAKQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQHHALN 122 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 T L L +D ++ V+ N I+L+ +F+LLW LA+ AG+I+ R Sbjct: 123 ST-------------LEISGLRMDSVSHSVSRDNISITLTRKEFQLLWLLASRAGEIIPR 169 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + + G+++D +VDVAI RLR K+ D E I T+R GY F Sbjct: 170 TVIASEIWGINFDSDTNTVDVAIRRLRAKVDDPFPEKL-IATIRGMGYSF 218 >UniRef50_A3JW86 DNA-binding response regulator n=1 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JW86_9RHOB Length = 242 Score = 116 bits (290), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 77/235 (32%), Positives = 122/235 (51%), Gaps = 2/235 (0%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 TI VEDD + I YL ++ +V E+ I + D+ L+D+ LP DG+ Sbjct: 7 TIALVEDDGLARAEICEYLRYNNYEVLSAGTQSDFEKKIANADVDIFLIDLGLPDGDGLD 66 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 + R L+ + + I++L+ D++ ++ LE+GA DYI K P +LAR+ LR+ E Sbjct: 67 VIRGLKGRANCGIIVLSGRSDDIDKVVCLEVGADDYITKPFNPREMLARVHSLLRRLENK 126 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLA-NTEISLSTADFELLWELATHAGQIM 181 T L S T + F ++D R + A N E L+ ++F+LL + + + Sbjct: 127 NETADLSTESTTD-SIISFLDWSLDTNTRQLFDADNIETPLTRSEFDLLVFFLKNPNRAL 185 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R+ L+ NLRG ++ G DR++D +SRLR KL + IKT+ GYLF P Sbjct: 186 SRETLIANLRGSNWAGYDRAMDGLVSRLRGKLSKGNSSINYIKTMHGVGYLFIPK 240 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 116 bits (290), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 7/232 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 MN +V V+D+ + LI YL + G A + E +L +LD+MLP DG Sbjct: 3 MNILV-VDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDG 61 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 T+C+ +R + P+++LT+ + +++ I L +GA DYI K P L+AR++ LR+ Sbjct: 62 FTLCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFT 121 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + QE L + F L +D TL +ISL+ +F +LW L ++ G++ Sbjct: 122 KYNSVEPNQEEHL-----IAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRV 176 Query: 181 MDRDALLKNLRGVSY-DGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 + + L + G Y + +V V I LR+K+ +A P IKTV GY Sbjct: 177 VSSEELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGY 228 >UniRef50_B1QVC8 DNA-binding response regulator n=9 Tax=Bacteria RepID=B1QVC8_CLOBU Length = 223 Score = 116 bits (290), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 75/234 (32%), Positives = 127/234 (54%), Gaps = 11/234 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ +ED+ + + ++L+K++ +V + E IL ENPDL+LLDI LP DG Sbjct: 1 MRKIMIIEDEVIIREELKSFLSKYNYEVVAPSDFENVIEFILNENPDLILLDINLPIFDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ICR++R PI+++TS DSDM+ ++++ +GA D++ K +LLAR+ L++ Sbjct: 61 YYICREIRKTSDIPIIIVTSRDSDMDELMSMNLGADDFVSKPYNTQILLARIAALLKR-- 118 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + G TS K L + I+ N ++ + EI L+ + ++L L + G I Sbjct: 119 ----SGGSSNTS----KYLIYNNFKINLSNATISREDKEIELTKNEIKILSCLIENKGSI 170 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + R+ L++ L Y D ++ V I+RLR+K L+ I+T R GY+ Sbjct: 171 VSREILMEYLWKSDYFVDDSTLTVNITRLRRK-LEGIGIKDAIETRRGLGYIMV 223 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 116 bits (290), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 124/230 (53%), Gaps = 12/230 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+D+A++ L+ + L K + Q T G +A + + R+ LVLLD+M+P DG+T Sbjct: 8 ILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLTA 67 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C +R + PI++LT+ +++ I L++GA DYI K P LLAR+ LR++ + T Sbjct: 68 CMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHRFT 127 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + Q +LT G L +D +R V ++ ISL+ +F+LL + ++ R Sbjct: 128 VD---QSATLT------IGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFSR 178 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + LL + G Y G R+VD I LR KL + I+TV GY F Sbjct: 179 EQLLDQIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKF 225 >UniRef50_Q020N6 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q020N6_SOLUE Length = 250 Score = 116 bits (290), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 117/232 (50%), Gaps = 11/232 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +I+ VEDD E+ SL+ Y A+H QV G + + DL++LD+MLP DG Sbjct: 25 RSILLVEDDTELTSLMTDYFAQHGFQVEAAHDGRTGLARAIEGSFDLIILDVMLPVLDGF 84 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R LR + + P+++LT+ S + + L GA DY+ K P LLAR+R LR+ Sbjct: 85 EVLRQLRKRSATPVIMLTARISQSDRVAGLNSGADDYLPKPFGPDELLARIRAVLRRTGH 144 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 T P + + L IDP R V I +++ +F++L L AG+ + Sbjct: 145 ---------TDAAPPQIVESAGLRIDPAARAVWDHGEAIEITSIEFDILEILVRSAGRTV 195 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD L L +RS+DV IS LRKKL + + I+T+R GY F Sbjct: 196 TRDELTAVLYQRPATPYERSLDVHISHLRKKLERD--DRSVIRTIRGVGYQF 245 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 116/231 (50%), Gaps = 7/231 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ +EDD ++ L A YL KH +V G + + NP LVLLDI+LPG G I Sbjct: 5 VLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMKGYEI 64 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C+ +R PI+ L+ + + L+ GA DY+ K L AR++ +LR+++ Sbjct: 65 CQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRSK--- 121 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + P + G L ID + V ++SL T + +LL L + + Sbjct: 122 ----MNANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNHVFSA 177 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + + + G+ + G ++V V IS LR+K+ +N ++P IKTVR GY F+ Sbjct: 178 EKIYDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFS 228 >UniRef50_Q2JPV2 DNA-binding response regulator n=17 Tax=Bacteria RepID=Q2JPV2_SYNJB Length = 230 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 121/231 (52%), Gaps = 14/231 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ +ED+A++ + L +V+V G +NPDLVLLD MLPG G+ I Sbjct: 11 ILVIEDEAKLARFVETELTCEGYRVSVASDGMAGLRAACDQNPDLVLLDWMLPGISGLEI 70 Query: 64 CRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 CR LR+ + P+VL+T+ D + L+ GA DY++K LL+R+R++LRQ ++ Sbjct: 71 CRRLRSTGNRVPVVLMTARDEVSDRAAGLDAGADDYVVKPFSIQELLSRIRIYLRQPRRS 130 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + L F L +DP+ R VT ++ L+ +++LL L H Q++ Sbjct: 131 RDGQ------------LVFMDLILDPVTREVTRGERQVELTAKEYDLLRYLMEHPRQVLT 178 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R +L+++ G + G ++V I LR K ++ E I+TVR GY+ Sbjct: 179 RQQILEHVWGCDFTGDSNIIEVYIRYLRLK-IEGPGEKRLIQTVRGVGYVL 228 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 121/231 (52%), Gaps = 11/231 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 TI+ V+D+A + ++ AYL +V G + + L E PDL++LD+MLPG DGM Sbjct: 4 TILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGME 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 I LR K I++LT+ +++ + L +GA DY+ K P L+AR+ LR+ Sbjct: 64 ITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRGK 123 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + + F + IDP R A + L+ +F+LL LA + +++ Sbjct: 124 PVKSSV----------MRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVLS 173 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ L++ + G + G DR VDV +S++R+K+ E I+T R GY F Sbjct: 174 REDLIEKVWGADFYGTDRVVDVYVSQVRRKIEALTGENL-IRTARGVGYRF 223 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 81/240 (33%), Positives = 124/240 (51%), Gaps = 16/240 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+D+ V ++ L + +V G+ A E NPDL++LD+++PG DG Sbjct: 1 MPNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDG 60 Query: 61 MTICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 +ICR L+ A PI++L++ +++ +L LEMGA DYI K P L+AR+ LR Sbjct: 61 YSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLR 120 Query: 118 QNEQATLTKGLQETSLTPYKALHF---GTLTIDPINRVVTLANTEISLSTADFELLWELA 174 +++ +E + P + + G L ID + L + L +FELL+ LA Sbjct: 121 RDK--------KEEFIIPRDSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLA 172 Query: 175 THAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKL-LDNAAEPYRIKTVRNKGYLF 233 G+ R LLK R+VDV I R+R+KL + NA + Y I+T R GY F Sbjct: 173 CQPGKYFSRYFLLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQY-IETARGVGYRF 231 >UniRef50_A8GHG0 Two component transcriptional regulator, winged helix family n=11 Tax=Enterobacteriaceae RepID=A8GHG0_SERP5 Length = 226 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 124/231 (53%), Gaps = 13/231 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD E+G++++ YL T+ G E L + ++LDIMLP G+ + Sbjct: 3 ILLVDDDLELGTMLSEYLTGEGFNATLVLTGKAGVEGALSGDYTAMILDIMLPDMSGIDV 62 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 RD+R K PI++LT+ +++ ++ LEMGA DY+ K P L+ARLR LR+ ++ Sbjct: 63 LRDVRKKSRMPIIMLTAKGDNIDRVIGLEMGADDYMPKPCYPRELVARLRAVLRRFDE-- 120 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + + A++FG LT++P R L+ ++F LL L +++ + Sbjct: 121 -----RPDEVDDEIAINFGELTLNPSTRSSEWRGKAFDLTASEFNLLELLLRAPERVVSK 175 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKK---LLDNAAEPYRIKTVRNKGY 231 D L + G + DRSVDV IS +R+K L DNA I+TVR+ GY Sbjct: 176 DELSEKGLGRPREAYDRSVDVHISNIRQKLGALTDNALS---IETVRSIGY 223 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 71/231 (30%), Positives = 116/231 (50%), Gaps = 12/231 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ +EDD + +++ YL + +V + G+ LVL+D+MLP DG + Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C +RA PI+++++ +D + + + +GA DY+ K P L AR++ +R+ E++ Sbjct: 63 CEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERSY 122 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 QE L F + ID R V +ISL+ +FELL LA H G++ + Sbjct: 123 PQ---QEDR------LQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTK 173 Query: 184 DALLKNLRGVSYDGLD-RSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + L + + DG D R+V V + +R KL D P I+TV GY F Sbjct: 174 EELYAAV--WNGDGFDSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKF 222 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 118/211 (55%), Gaps = 12/211 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENP-DLVLLDIMLPGKDGMT 62 I V+DD + ++ AYL K T ++A T+ +ENP DL +LDIMLPG +G Sbjct: 6 IAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAI-TLEQENPPDLWVLDIMLPGMNGYE 64 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 CR +RA PI+++++ D +++ IL LE+G+ DY+ K P L+AR+ L++ +Q Sbjct: 65 FCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQRWKQ- 123 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + ++T+++ L +D R+V E+ +++ +F++L L+ H + Sbjct: 124 -MKSHAEQTAIS--------ALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAFS 174 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKL 213 RD LL + G Y G DR VD I R+RKKL Sbjct: 175 RDELLSLIWGFDYFGSDRVVDDLIRRIRKKL 205 >UniRef50_A4VMA3 DNA-binding response regulator n=8 Tax=Pseudomonadaceae RepID=A4VMA3_PSEU5 Length = 225 Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 127/235 (54%), Gaps = 12/235 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M+ ++ ++DD E+ L+ ++LA+ G A++ + + P V+LD+MLP G Sbjct: 1 MSELLLIDDDQELCELLISWLAQEGFVAHACHDGQSAKQALAQYQPAAVVLDVMLPDGSG 60 Query: 61 MTICRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + + + LR++ P+++L+ ++ IL LE+GA DY+ K P L ARLR LR++ Sbjct: 61 LELLKQLRSEHPDLPVLMLSGRGEPLDRILGLELGADDYLAKPCDPRELTARLRAVLRRS 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + A L+ G L+ P V ++ ++SL+ ++ +L L AG+ Sbjct: 121 QPAAAPSQLE-----------LGDLSYSPARGVASVGGHDVSLTLSEGRILEALLAQAGE 169 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 +D+ AL ++ G DRS+D+ +S LR+KL +A RI +R++GYL++ Sbjct: 170 PIDKQALAQHALGRKLTLYDRSLDMHVSNLRRKLGPHADGSPRIVALRSRGYLYS 224 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 120/236 (50%), Gaps = 20/236 (8%) Query: 3 TIVFVEDDAEVGSLIAAYLAKH-DMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +IV +EDD ++ I L + VT+ G+ T+L P+L+LLDI LP +G Sbjct: 4 SIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLMNGF 63 Query: 62 TICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 ICR LR A PI++LT+ + + I L +GA DYI K L+AR+ LR+ Sbjct: 64 EICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAVLRR 123 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 E TP GTL ID + VV EI+L+ +F LL LA G Sbjct: 124 TEG------------TPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQSKG 171 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 +++ R+ LL + G+ YDG R++DV I R+R+KL + Y I+T GY F Sbjct: 172 RVLTREYLLDRVWGIDYDGETRTLDVHIRRVRQKL---GIDGY-IETAVGIGYRFV 223 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 123/235 (52%), Gaps = 12/235 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ +EDDA + LI Y+ K G++ E E+PD ++LDIMLP +G + Sbjct: 7 VLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGWEV 66 Query: 64 CRDLRAK-WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 C+ +R + PI++LT + I L +GA DYI+K P L+AR++ LR + Sbjct: 67 CKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLR---RT 123 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 L++ ++ L F + I V + N E+ ++ + EL + LA + Q++ Sbjct: 124 ILSESEKDR-------LQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVLT 176 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R LL + G ++G R+VDV I R+R KL ++ A+ + I T+R GY F ++ Sbjct: 177 RQQLLDRVWGYEFNGDPRTVDVHIKRIRDKLAEHKAK-WSIVTIRGVGYRFEENS 230 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 69/230 (30%), Positives = 121/230 (52%), Gaps = 5/230 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 NTI+ V+D+ E+ LI YL +V G +A E + +E DL++LDIM+P DG+ Sbjct: 4 NTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGI 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 C +R + + PI++L++ DM+ I L GA DY+ K P L+AR++ LR+ ++ Sbjct: 64 EACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKK 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + G + + LTI+ V + ++ L+ +F++L LA + G + Sbjct: 124 FNVQNGYINDDI-----IEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVF 178 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 + + + + + D +V V I +LR+K+ +N +P +KTV GY Sbjct: 179 SIEKIYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGY 228 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 119/235 (50%), Gaps = 19/235 (8%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 T++ V+D+ ++ L+ YL + G++A + + D++L+D+M+P DG Sbjct: 4 KTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGF 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ--- 118 T+C +R + PI+ LT+ + + + L++G DYI+K P L+AR+ +R+ Sbjct: 64 TLCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYH 123 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 N+Q + L FG L ID R VT+ + L+ +F+LL LA H G Sbjct: 124 NKQKN-------------EDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHG 170 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 Q+ R+ LL + G Y G R+VD I LR KL A + I+TV GY F Sbjct: 171 QVFSREDLLAQVWGYDYTGNARTVDTHIKTLRMKL--KQASDF-IQTVWGIGYKF 222 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 17/234 (7%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENP-DLVLLDIMLPGKD 59 M ++ VED+ + +I Y+ + G A IL+ NP DL++LD+M+P D Sbjct: 20 MANVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDAL-MILKSNPMDLMILDVMMPHLD 78 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G ++C+ R + PI++LT+ + + + E GA DY+ K P VLLA+ LR++ Sbjct: 79 GFSVCKLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRS 138 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 A P AL+ G + + P + V + EI+L+ ++ELL+ L + GQ Sbjct: 139 SPA------------PLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQ 186 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 I RD LL + G ++G R+VD I LR+KL D E I T+ GY F Sbjct: 187 IFARDQLLNRIWGYDFEGTTRTVDTHIKTLRQKLGD---EGKHIVTLIRSGYKF 237 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 9/232 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ ED+ + S I L + +V G +A + ++ D++LLDIM+P DG Sbjct: 1 MTKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDG 60 Query: 61 MTICRDLRAK-WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 +C R+K I++LT+ + + ++ L +GA DYI K PA LLAR++ LR+ Sbjct: 61 FAVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRV 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 E TL + Q L G ID + V A ++ ++ +++LL + Q Sbjct: 121 E--TLRRRKQPRELVS------GPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQ 172 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 +M RD LL + G +Y G ++VDV I RLR+K+ +N AEP I+T+ GY Sbjct: 173 VMSRDELLDAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGY 224 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 116/236 (49%), Gaps = 7/236 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+D+ + +I AYL K V G A + EN L++LD+MLP G + Sbjct: 7 ILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEEV 66 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C +RA S PI++LT+ + I + MGA DY+ K L+ R+R LR+ + Sbjct: 67 CNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYRDF 126 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + + + G L +D VV ++L+T +F++L ++ Q+ R Sbjct: 127 -------SPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFSR 179 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 + L++ G +Y+G DR+VD I +R+K+ N EP I TV GY F P E Sbjct: 180 EKLVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIPSNGE 235 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/238 (32%), Positives = 127/238 (53%), Gaps = 19/238 (7%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEP---------RGDQAEETILRENPDLVLLDIM 54 I+ VED+A + ++A L + V V R D E + ENPDLV+LD+M Sbjct: 26 ILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDLM 85 Query: 55 LPGKDGMTICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLR 113 LP +G+ CR LR + + PI++L++ D++ + ++ LE+GA DY+ K L+AR R Sbjct: 86 LPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARCR 145 Query: 114 LHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWEL 173 LR+++ + + TP L + L + P V L + E++LS +F LL Sbjct: 146 ALLRRSQN--------QPAETP-AVLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLELF 196 Query: 174 ATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 H ++ RD LL+ + G+ + G +++DV I LR+K+ N + P + TVR GY Sbjct: 197 MRHPRRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGY 254 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 5/233 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N I+ V+D+ + L+ YL + ++ G +A E + N +LLD+MLP DG+ Sbjct: 3 NEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGI 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + LR PI++LT+ + N + E GA DYI+K P ++ R++ LR+ + Sbjct: 63 QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 T ++++ + F L ID V N E++L+ ++ELL LA ++ Sbjct: 123 TT----VEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVF 178 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAE-PYRIKTVRNKGYLF 233 DR+ LLK + + G R+VD + RLR+KL ++E + I+TV GY F Sbjct: 179 DREQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKF 231 >UniRef50_A6VZA5 Two component transcriptional regulator, winged helix family n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZA5_MARMS Length = 226 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 127/237 (53%), Gaps = 20/237 (8%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M+ ++ +ED+ ++ L++AYL + + RGD A I D+VLLD+MLPG DG Sbjct: 1 MSKVLIIEDEPKLAELMSAYLEQAGYEHHHLDRGDIAVNYIKNNQVDIVLLDLMLPGLDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + IC+ +R PI+++T+ +++ ++ LEMGA DY+ K P ++AR++ +LR+ E Sbjct: 61 VEICKQVRQFSGVPIIMVTAKAEEIDRLIGLEMGADDYVCKPFSPREIVARVKANLRRVE 120 Query: 121 ----QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATH 176 ++ T G + + +A + G L I L+T +F+LL L Sbjct: 121 LDQAESPRTDGF-DLDVDRLRATYKGDL---------------IDLTTVEFQLLQLLIKE 164 Query: 177 AGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 G++ RD ++K++ S DR++D I +LRKK+ A E I +V GY F Sbjct: 165 PGRVFGRDLIMKSIYADSRVVSDRTIDSHIKKLRKKISAVAPELNVIHSVYGAGYRF 221 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 116/236 (49%), Gaps = 11/236 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ +DD + ++ L V G +A + L + PDLV+LD+M+P DG + Sbjct: 7 ILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGFAV 66 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C +RA + PI+LLT+ ++ ++ +GA DY+ K L+ R+ LR+ Sbjct: 67 CGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRM---- 122 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 +L + L FG L I+ R V + + L+ +F+LLW +A+H G R Sbjct: 123 -------PTLPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPFTR 175 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 ++LL + +V V I RLR+K+ DN A+P IKTV GY F P E Sbjct: 176 ESLLARVWHGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDPAGAE 231 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 338 9e-92 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 337 3e-91 UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 336 5e-91 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 332 4e-90 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 332 7e-90 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 332 8e-90 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 330 3e-89 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 330 3e-89 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 329 4e-89 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 329 4e-89 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 329 4e-89 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 329 4e-89 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 329 7e-89 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 328 9e-89 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 326 3e-88 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 326 3e-88 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 326 4e-88 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 326 4e-88 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 325 9e-88 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 325 9e-88 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 324 2e-87 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_P52108 Transcriptional regulatory protein rstA n=163 Ta... 324 2e-87 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 323 3e-87 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 323 4e-87 UniRef50_B8G179 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 321 1e-86 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 321 2e-86 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 320 2e-86 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 320 3e-86 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 319 5e-86 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 319 5e-86 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 319 6e-86 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 319 6e-86 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 319 7e-86 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 318 9e-86 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 318 9e-86 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 318 1e-85 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 318 1e-85 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 317 1e-85 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 317 2e-85 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 316 3e-85 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 316 3e-85 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 316 4e-85 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_C4L340 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 315 6e-85 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 315 6e-85 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 315 8e-85 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 315 8e-85 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 315 1e-84 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 315 1e-84 UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regu... 314 1e-84 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 314 1e-84 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 314 2e-84 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 314 2e-84 UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromo... 314 2e-84 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 314 2e-84 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 313 3e-84 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 313 3e-84 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 312 5e-84 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 312 5e-84 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 312 6e-84 UniRef50_B8I272 Two component transcriptional regulator, winged ... 312 6e-84 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 312 7e-84 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 312 8e-84 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 312 8e-84 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 311 1e-83 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 311 1e-83 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 311 1e-83 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 311 1e-83 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 311 1e-83 UniRef50_Q3KAS5 Two-component system, response regulator n=2 Tax... 310 2e-83 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 310 2e-83 UniRef50_D1C280 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 310 3e-83 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 310 3e-83 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 309 5e-83 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_D1C683 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 309 7e-83 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 309 8e-83 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 308 8e-83 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 308 1e-82 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 307 2e-82 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 307 2e-82 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 307 2e-82 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 307 2e-82 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 307 3e-82 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_A4J267 Two component transcriptional regulator, winged ... 306 3e-82 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 306 3e-82 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 306 4e-82 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 306 4e-82 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 306 5e-82 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 305 5e-82 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 305 7e-82 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_Q3JG93 Response regulator protein n=61 Tax=Proteobacter... 305 8e-82 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 305 9e-82 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 304 1e-81 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 304 1e-81 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 304 2e-81 UniRef50_A4AL32 Putative two-component system response regulator... 303 3e-81 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 303 3e-81 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 303 4e-81 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 302 5e-81 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 302 5e-81 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 302 6e-81 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 302 6e-81 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 302 6e-81 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 302 7e-81 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 302 7e-81 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 302 8e-81 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 302 9e-81 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 302 9e-81 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromon... 301 1e-80 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 301 1e-80 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 301 2e-80 UniRef50_A9KX94 Two component transcriptional regulator, winged ... 300 2e-80 UniRef50_Q2S740 Response regulator consisting of a CheY-like rec... 300 3e-80 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 300 3e-80 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 299 4e-80 UniRef50_C0WE14 Two-component system transcriptional regulator n... 299 4e-80 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 299 4e-80 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 299 5e-80 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 299 5e-80 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 299 6e-80 UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmic... 299 6e-80 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 298 9e-80 UniRef50_C5D1A0 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_D1U371 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 298 1e-79 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 298 1e-79 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 297 2e-79 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 297 2e-79 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 297 2e-79 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_A9ANV0 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 297 2e-79 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 297 2e-79 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 297 3e-79 UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax... 296 4e-79 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 296 5e-79 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 296 5e-79 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 296 5e-79 UniRef50_C6CSH8 Two component transcriptional regulator, winged ... 296 5e-79 UniRef50_C1SP47 Response regulator with CheY-like receiver domai... 296 5e-79 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 295 7e-79 UniRef50_A4CEI9 Transcriptional regulatory protein RstA n=3 Tax=... 295 7e-79 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 295 8e-79 UniRef50_C8SEM3 Two component transcriptional regulator, winged ... 295 8e-79 UniRef50_C6AWS7 Two component transcriptional regulator, winged ... 295 9e-79 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 294 1e-78 UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionell... 294 1e-78 UniRef50_A6VT30 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 294 2e-78 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 294 2e-78 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 294 2e-78 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 294 2e-78 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 294 2e-78 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 294 3e-78 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 294 3e-78 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 294 3e-78 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 293 3e-78 UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=... 293 4e-78 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 293 4e-78 UniRef50_A0LCI2 Two component transcriptional regulator, winged ... 292 5e-78 UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=... 292 5e-78 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 292 6e-78 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 292 6e-78 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 292 7e-78 UniRef50_B2J8Q5 Two component transcriptional regulator, winged ... 292 7e-78 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 292 7e-78 UniRef50_B9XFI9 Two component transcriptional regulator, winged ... 292 7e-78 UniRef50_D1BL25 Two component transcriptional regulator, winged ... 292 9e-78 UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacilla... 292 9e-78 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_B8JG70 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_A0L7S7 Two component transcriptional regulator, winged ... 291 1e-77 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 291 2e-77 UniRef50_A3QF24 Two component transcriptional regulator, winged ... 290 2e-77 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 290 2e-77 UniRef50_A9ASF4 Two component transcriptional regulator, winged ... 290 2e-77 UniRef50_UPI0001C164FC Two component Transcriptional regulator, ... 290 3e-77 UniRef50_C7I0W4 Two component transcriptional regulator, winged ... 290 3e-77 UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangi... 290 3e-77 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 290 3e-77 UniRef50_Q1LHM7 Two component transcriptional regulator, winged ... 290 3e-77 UniRef50_A9KP45 Two component transcriptional regulator, winged ... 290 3e-77 UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regu... 290 4e-77 UniRef50_A9AVR8 Two component transcriptional regulator, winged ... 289 4e-77 Sequences not found previously or not previously below threshold: UniRef50_B8G223 Two component transcriptional regulator, winged ... 312 6e-84 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 309 7e-83 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 309 7e-83 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 305 6e-82 UniRef50_B8I014 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 303 4e-81 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 302 4e-81 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 301 1e-80 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 300 3e-80 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 299 5e-80 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 299 6e-80 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 299 6e-80 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 298 9e-80 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 297 2e-79 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 297 2e-79 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 296 4e-79 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 296 5e-79 UniRef50_C4L703 Two component transcriptional regulator, winged ... 295 6e-79 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 295 1e-78 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 294 2e-78 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 292 7e-78 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 292 8e-78 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 291 2e-77 UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 290 2e-77 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 290 3e-77 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 290 4e-77 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 289 4e-77 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 338 bits (869), Expect = 9e-92, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 7/232 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 + I+ VEDDA + L+ LAK + G +A T P LV+LD+MLPG DG Sbjct: 30 HKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGF 89 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +R + S PI++LT+ S+ + + LE GA DY+ K LLAR++ LR+++ Sbjct: 90 ELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQ- 148 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 Q + L G L I +V + S +F+L + + ++ Sbjct: 149 ------TQNSQTETTGGLKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVF 202 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LL+ + G Y G R+VDV IS LR+K+ + + P + TVR GY F Sbjct: 203 SREQLLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKF 254 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 337 bits (865), Expect = 3e-91, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 127/237 (53%), Gaps = 5/237 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VED+ + + YL + + +V G + + L PDL++LD+M+P KDG Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C ++R + + PI++LT+ + + IL L MGA DY+ K P L+ R+++ LR+ Sbjct: 61 WELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRRGN 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 Q + + + + + F L I P R V + E+ L+ +FE+L+ +A H Q+ Sbjct: 121 QVAI-----QAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQV 175 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R LL+ + ++G +V V +SRLR+KL + + + I TV GY F P+ Sbjct: 176 FSRSQLLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNG 232 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 336 bits (862), Expect = 5e-91, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 126/237 (53%), Gaps = 5/237 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ +D+ E+ L+ YL + V G++A + +LV+LD+M+P DG+ Sbjct: 5 RVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKIDGIE 64 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR LR + PI++LT+ D +++ I+ L +GA DYI K ++AR++ +R+ Sbjct: 65 VCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRRFLVL 124 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 QE ++ L F LTID +VT+ + EISL+ + ELL A++ Q+ Sbjct: 125 GSNANTQEKTI-----LTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPEQVFT 179 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 + L +N+ +Y D +V V I +LRKK+ + + P I+TV GY F +E Sbjct: 180 KTQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGEKYE 236 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 332 bits (854), Expect = 4e-90, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 1/239 (0%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M+ I+ V+D+ + +L++ L + +V G A L ++ +LLD+MLP DG Sbjct: 3 MDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDG 62 Query: 61 MTICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 M + + LR + PI+++T+ + + + + LE+GA DYI K P +LAR++ +R+ Sbjct: 63 MEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRT 122 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + G L ID V ISL+ +FELL G+ Sbjct: 123 TPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGR 182 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 ++ RDA+L ++ G Y R VD+ IS LR+K+ + +P I+TVR GY F Sbjct: 183 VLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGDGH 241 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 332 bits (852), Expect = 7e-90, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 132/235 (56%), Gaps = 10/235 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDD + + ++ L K +V V G +A NPDLVLLDIMLP KDG Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+++R + PI++LT+ D +++ +L L+MGA DYI K LLAR+ LR+ + Sbjct: 61 WEVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + L+ + + +D + R V + E++LS +FE+L L + G++ Sbjct: 121 ----------SDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRV 170 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 RD ++K++ G ++ G R+VDV I LR+K+ D+ + P I TVRN GY F Sbjct: 171 WTRDMIIKHIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQE 225 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 332 bits (852), Expect = 8e-90, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 123/236 (52%), Gaps = 9/236 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+D+ ++ +++ +YL K +V G +A + +E PDL++LD M+P G+ Sbjct: 3 RKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGI 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R++R K PI++LT+ +++ ++ E G DY++K L AR++ L++ Sbjct: 63 EVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR--- 119 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 L+ ++ L G LT+ P R V L + L+ +F+LL + G+ Sbjct: 120 ------LEAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAY 173 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R LL+ G +Y+G +R++D IS LRKK+ + A P I+TV GY P Sbjct: 174 SRLELLEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPRG 229 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 130/236 (55%), Gaps = 7/236 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+DD ++ ++ AYL K V G +A + + PD+VLLD+MLP DG Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C+++R PI++LT+ D + + I+ LE+GA DY++K P +LAR+R R+ + A Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPA 121 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + G + + L G +D +R +T+A T + L+ +++LL H GQ+ Sbjct: 122 SRRDGGE-------RILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFS 174 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 R L++ ++ +++G +R+VD I LRKKL + EP+ IKT+ GY Sbjct: 175 RLQLIEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGEQH 230 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 122/232 (52%), Gaps = 9/232 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VED+ + +AAYL + + VT G A E + + DLV+LD+MLP G Sbjct: 9 RRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGE 68 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +R PI++LT+ + I+ LE+GA DY++K P L+AR+R LR+ Sbjct: 69 RVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVH- 127 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 S + L FG LTID V + E+ L+ ++F+LL L+ + G++ Sbjct: 128 --------ADSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVY 179 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R L++ + G ++G +R++D + LR K+ DN P + TV GY F Sbjct: 180 SRMELVEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRF 231 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 131/233 (56%), Gaps = 6/233 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ +ED ++ +LIA L D VT G + + DL++LDIMLP DG+ Sbjct: 3 KRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGL 62 Query: 62 TICRDLRAKWS-GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ LRAK PI++LT+ S+ + ++ LE GA DY+ K L AR++ HLR+ + Sbjct: 63 QVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTD 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + +E++ ALHFG L ID R +T+ + EI+L+ +F+LL +A+H GQ+ Sbjct: 123 MS-----QKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQV 177 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LL + G + G + +V+ I+RLR KL + + P + TV GY F Sbjct: 178 FSREKLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 121/235 (51%), Gaps = 1/235 (0%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ V+D+ + +L+ L + V G A I + D+VLLD+MLP G Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 61 MTICRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + + +R + P+++LT+ D++ + + LEMGA DY+ K P ++AR+ LR+ Sbjct: 61 EEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRY 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 E++ + + G TID V++ + + L+ +FEL+ L H Q Sbjct: 121 EKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQ 180 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ RD LL+ + G Y G R VD+ I+ LR+K+ + P +KT+R GY F+ Sbjct: 181 VLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFS 235 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 78/241 (32%), Positives = 125/241 (51%), Gaps = 9/241 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+DD + L++ LA+ V ++A + + E+ D+ ++DIMLPG DG Sbjct: 28 KKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGF 87 Query: 62 TICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 + R LR + P+V L++ + + +L LE+GA DYI K ++AR++ R+ Sbjct: 88 ELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRR 147 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 + + + + K + L ID V + + ++SL+ +FELL LA + G Sbjct: 148 IQLSAQEREERP------KKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEG 201 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 ++ RD LL L G Y G R+VDV I RLR K+ ++ + P I TVR KGY F Sbjct: 202 KVFSRDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGK 261 Query: 239 E 239 E Sbjct: 262 E 262 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 329 bits (846), Expect = 4e-89, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 130/235 (55%), Gaps = 8/235 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+A + L++ L K +V + G A + DLVLLDIMLP DG+ Sbjct: 2 QILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDGLE 59 Query: 63 ICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 +CR L+ PI++LT+ +++ +L LE+GA DY++K LLAR++ LR++ Sbjct: 60 VCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLRRS 119 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 A++ KG +E ++L G L +D + L + I+L+ ++ELL L T+ G+ Sbjct: 120 --ASVQKGSRENKERE-ESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNPGR 176 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 RD LL+ + G Y G R+VDV I LR KL D+ I+TVR GY FA Sbjct: 177 AFSRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFA 231 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 329 bits (844), Expect = 7e-89, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 123/236 (52%), Gaps = 8/236 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+D+ + + L + QVT G +A + DL++LD+MLPG DG Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +TICR++RA PI++LT+ D++ IL LE+GA DYI K L+AR+R LR+ E Sbjct: 61 LTICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 A+ L G L + P R +A + L+ +++LL LA H G + Sbjct: 121 AASRQDR--------AGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVV 172 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R LL + G + G +R+VDV + R+R+KL ++ + P ++T GY Sbjct: 173 YTRQELLDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 328 bits (843), Expect = 9e-89, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 129/235 (54%), Gaps = 5/235 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +V V+D+ + ++ L K V G+ A + I E PD+VLLDIMLPG+DGM Sbjct: 3 RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGM 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR++R K+ PI++LT+ DS+++ +L LE+GA DY+ K L+AR++ +LR++ Sbjct: 63 EVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 T+ + + I P + +I L+ +FEL L+ H GQ+M Sbjct: 123 QPAQDTGNVTN-----EITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVM 177 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R+ LL+ + G Y G R+VDV I RLR+K+ D+ + P I T R GY H Sbjct: 178 TREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGYFLQQH 232 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 327 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 80/244 (32%), Positives = 129/244 (52%), Gaps = 9/244 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M+ I+ VED+ + L+ L K +V GD+A + DL++LD+MLPG DG Sbjct: 1 MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDG 60 Query: 61 MTICRDLRAKWS--GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR- 117 + +CR +R S P+++LT+ ++ I+ LEMGA DY+ K P LLAR++ LR Sbjct: 61 LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120 Query: 118 QNEQATLTKGLQETSL------TPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLW 171 + ++ T K ++ G L+I P + N E+ L+ +FELL Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLN 180 Query: 172 ELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 + T++GQ++ R+ LL+ + G + G R+VDV I LR+K+ + P ++TVR GY Sbjct: 181 IMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 Query: 232 LFAP 235 Sbjct: 241 RLKE 244 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 85/240 (35%), Positives = 131/240 (54%), Gaps = 12/240 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENP-DLVLLDIMLPGKD 59 M ++ VEDD V ++ L++ ++ P G+ A E + P DLVLLD+MLPG D Sbjct: 1 MARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMD 60 Query: 60 GMTICRDLRAKWS----GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLH 115 G+++CR+LR S P+V+LT+ D + + ++ LE+GA DYI K P L +R+R Sbjct: 61 GISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQ 120 Query: 116 LRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELAT 175 LR+ Q + L F L ID + R VT ++ L+ +FE+L LA+ Sbjct: 121 LRRQRMNAQASPEQ-------RKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLAS 173 Query: 176 HAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + G++ R+ ++ +L G + G RS DV I LR+K+ + P I+TVR GY FA Sbjct: 174 NPGRVYSREQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFAE 233 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 5/231 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 NTI+ V+D+ E+ LI YL +V G +A E + +E DL++LDIM+P DG+ Sbjct: 4 NTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGI 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 C +R + + PI++L++ DM+ I L GA DY+ K P L+AR++ LR+ ++ Sbjct: 64 EACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKK 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + G + LTI+ V + ++ L+ +F++L LA + G + Sbjct: 124 FNVQNGYIND-----DIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVF 178 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + + + + + D +V V I +LR+K+ +N +P +KTV GY Sbjct: 179 SIEKIYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYK 229 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 122/231 (52%), Gaps = 12/231 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+A++ L+ + L K + Q T G +A + + R+ LVLLD+M+P DG+T Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 C +R + PI++LT+ +++ I L++GA DYI K P LLAR+ LR++ + Sbjct: 67 ACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHRF 126 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T+ + L G L +D +R V ++ ISL+ +F+LL + ++ Sbjct: 127 TVDQSA---------TLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFS 177 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LL + G Y G R+VD I LR KL + I+TV GY F Sbjct: 178 REQLLDQIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKF 225 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 123/232 (53%), Gaps = 9/232 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+DD ++ ++ L K +V G++A + + +PDLV+LD+M+PG DG Sbjct: 3 QRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMDGF 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + L+A+ PI++L++ +++ ++ MG DY K P L R++ LR+ Sbjct: 63 ETYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRR--- 119 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 L E + L +G LT+D R V + N+++ L+ FELLW +A++ ++ Sbjct: 120 ------LGEPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNRVF 173 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + LL + S+ G D +V V I RLR+K+ + + P IKTV GY F Sbjct: 174 TKAHLLDKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKF 225 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 326 bits (837), Expect = 4e-88, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 125/232 (53%), Gaps = 3/232 (1%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+DDA + LI+ YL K + G++A P+L+LLD+MLPG DG Sbjct: 5 QKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGY 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR++R + PI++L++ + +L LE+GA DY++K L+AR++ LR+ Sbjct: 65 EVCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRVVP 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + T Q + + + L I+ N VT I + + EL + LA+H Q+ Sbjct: 125 SQST-SEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVF 183 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LL ++ G Y G R+VDV I RLR+K+ D+ + +R+ TV GY F Sbjct: 184 TREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHIS--WRLSTVWGIGYKF 233 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 325 bits (834), Expect = 9e-88, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 123/233 (52%), Gaps = 5/233 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+D+A + L+ YL + + + GD+A L N DL+LLD+M+PG DG+ Sbjct: 7 TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGI 66 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +R K + PI++LT+ + N + E G DYI+K P ++ R++ LR+ Q Sbjct: 67 EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRASQ 126 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + T L F L+ID VT TE+SL+ ++ELL+ LA ++ Sbjct: 127 TSYFNANTPT----KNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVY 182 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLD-NAAEPYRIKTVRNKGYLF 233 DR+ LLK + + G R+VD + RLR+KL + +I TV GY F Sbjct: 183 DREKLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKF 235 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 325 bits (834), Expect = 9e-88, Method: Composition-based stats. Identities = 108/238 (45%), Positives = 152/238 (63%), Gaps = 3/238 (1%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ VEDD + L YL + + V+VEP G +A E I E PDLV+LD+MLPG+DG++ Sbjct: 27 RILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGEDGLS 86 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE-- 120 ICR +R ++GPI++LT+ D++ +L LEMGA DY+ K P VLLAR+R LR+ + Sbjct: 87 ICRKVRPSYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLRRVKEQ 146 Query: 121 -QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 +A + E S L F L ID R L + I L++A+F+LLW LA+ AG+ Sbjct: 147 GEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWLLASSAGR 206 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 ++ R+ + LRG+ YDG DRS+DV +SR+R K+ D+ P RIKTVR+KGYLF A Sbjct: 207 VLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYLFVKEA 264 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 13/239 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+D+ + LI +L G A + DLV+LD+M+P DG Sbjct: 72 MAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDG 131 Query: 61 MTICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 MT R++RA+ + P+++LT+ + + + LE GA DY++K P L+AR++ L + Sbjct: 132 MTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRT 191 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 S + FG LTID + V +A ++SL+ +F+LL LA++ G Sbjct: 192 MPR---------SEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGI 242 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 + R+ +L+ + Y G DR+VD + LR L I TV GY F P A Sbjct: 243 ALSREKILQKVWNYDYFGEDRTVDTHVKMLRGHLGKCRG---YIATVWGIGYKFDPDAA 298 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 124/233 (53%), Gaps = 11/233 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+DD V L+ Y + +V GD RENPD+V+LDIMLPG+DG++ Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR LRA PI++LT+ + + +L LEMGA DY+ K P L+AR++ LR+++ A Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 Q L + L I R V + E ++ +F+LL+ LA + ++ Sbjct: 126 DPATNWQ---------LKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFT 176 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R+ LL + G Y G R+VDV I RLR KL E ++TV GY F P Sbjct: 177 REELLGAVWGYDYFGDQRTVDVHIRRLRTKLASLPHE--YLQTVWGVGYKFTP 227 >UniRef50_P52108 Transcriptional regulatory protein rstA n=163 Tax=Proteobacteria RepID=RSTA_ECOLI Length = 239 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 239/239 (100%), Positives = 239/239 (100%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG Sbjct: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE Sbjct: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI Sbjct: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE Sbjct: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 134/237 (56%), Gaps = 6/237 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+DD + +L+ YL + QV +Q + + RE+ L++LD+MLPG+DG+ Sbjct: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 62 TICRDLRAKWS-GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +ICR LR++ + PI+++T+ +++ I+ LE+GA DYI K P LLAR+R LR+ Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 QE + + FG ++ R + + + L++ +F +L L +H + Sbjct: 125 NELPGAPSQEEA-----VIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + RD L+ RG Y ++RS+DV ISRLR+ + ++ A P I+TV GY+F P Sbjct: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 7/231 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+D+ + + L + +V G++A E + D++LLDIMLP DG++ Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C+ +R + PI++LT+ DM+ IL L+ GA DYI K + AR++ LR+N Sbjct: 73 VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSSI 132 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T + + G + ID +R + +A+ EI+L+ +F+LL LA + G++ Sbjct: 133 TQKEQKS-------NVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYS 185 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD LLK + G Y G R+VDV + RLR+K+ +N +EP + T GY F Sbjct: 186 RDNLLKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 128/237 (54%), Gaps = 15/237 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDDA + L+ L + V + G++A E + +E PDLVLLD+MLP DG Sbjct: 1 MVKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDG 60 Query: 61 MTICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 + +C+ +R + P+++L++ D + ++ LE+GA DYI K P LLAR++ LR Sbjct: 61 LDVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLR 120 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + S P +L +G L I P + +VT+ +++L+ +FELL Sbjct: 121 ---------EERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRP 171 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 Q+ R+ LL+ + G + G R+VDV IS LR KL + I++VR GY A Sbjct: 172 NQVFSREYLLQKVWGYTVSGDTRTVDVHISNLRSKL---KSVSPIIESVRGVGYRLA 225 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 116/231 (50%), Gaps = 6/231 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+ + LI YL + G A + E +L +LD+MLP DG T Sbjct: 4 NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGFT 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C+ +R + P+++LT+ + +++ I L +GA DYI K P L+AR++ LR+ + Sbjct: 64 LCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTKY 123 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + QE L + F L +D TL +ISL+ +F +LW L ++ G+++ Sbjct: 124 NSVEPNQEEHL-----IAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVS 178 Query: 183 RDALLKNLRGVSYDGLD-RSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + L + G Y +V V I LR+K+ +A P IKTV GY Sbjct: 179 SEELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYK 229 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 72/233 (30%), Positives = 120/233 (51%), Gaps = 5/233 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N I+ V+D+ + L+ YL + ++ G +A E + N +LLD+MLP DG+ Sbjct: 3 NEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMDGI 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + LR PI++LT+ + N + E GA DYI+K P ++ R++ LR+ + Sbjct: 63 QVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRTQS 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 T+ +++ + F L ID V N E++L+ ++ELL LA ++ Sbjct: 123 TTV----EQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNKVF 178 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAE-PYRIKTVRNKGYLF 233 DR+ LLK + + G R+VD + RLR+KL ++E + I+TV GY F Sbjct: 179 DREQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKF 231 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 11/235 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ VED+A + I L +V G+ A + PDLV+LD+MLPG DG+ Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 63 ICRDLRAKWSGP-IVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+ +R P I++LT+ D + I+ LE+GA DY++K P L+AR++ LR+ ++ Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + +G+L +D + N E+ L+ ++ LL + G+ + Sbjct: 127 YEAGRTG----------YTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKAL 176 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R+ +L + G Y G +++DV I RLR+K+ DN ++P IKT+ GY + P Sbjct: 177 RREEMLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 10/234 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M+TI+ V+D+ + ++ YL + V G +A E PDLV+LD+M+P G Sbjct: 1 MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 R + P+++LT+ D + IL LE+GA DY+ K L+AR+R LR+ + Sbjct: 61 YEFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQ 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 Q L L + +D R V + + L+ ++F +L L GQ+ Sbjct: 121 QTPLEP----------DVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQV 170 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R LL + G +++G +R++DV I LR K+ + P I+TV GY FA Sbjct: 171 FSRLDLLDRVSGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFA 224 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 120/235 (51%), Gaps = 7/235 (2%) Query: 1 MNTI--VFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGK 58 M I + +D+AE+ LI +L K V G++A I + DLV+LDIM+P Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 59 DGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 DG + R +RAK PI+ L++ SD + + L +GA DY+ K P L+AR+ LR+ Sbjct: 61 DGYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 K + S AL G + IDP R V + +I L+ +F++L+ LA+H Sbjct: 121 FLTLNQPKVAESKS-----ALEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPK 175 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ + + + + + Y +V V I LRKKL ++ + IKTV GY F Sbjct: 176 KVYNVENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTF 230 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 121/237 (51%), Gaps = 7/237 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 TI+ +EDD E+ ++ YL + +V + G+ +P L+L+D+MLP DG Sbjct: 15 TILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLPKVDGFE 74 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR +R + PI+++++ SD++ I +L +GA DYI K P L+AR++ HLR+ + Sbjct: 75 VCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHLRRYHRY 134 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 K + K L F LTI+ R+V ++L+ +FELL LA GQ+ Sbjct: 135 NGLKEQE-------KVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEAPGQVFS 187 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 ++ L + R+V V I +R+KL D + P I TV GY F E Sbjct: 188 KEQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIGQKHE 244 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 121/232 (52%), Gaps = 4/232 (1%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 MN I+ V+D+ E+ LI YL V G +A E I +N D+ +LDIMLP D Sbjct: 1 MNENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDID 60 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G IC+ +R K+ PI++LT+ D++ I+ L +GA DYI K P ++AR++ LR+ Sbjct: 61 GFHICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRY 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + + Q + Y L I+ +L E++L+ +F +LW L H G+ Sbjct: 121 MRYNNSYEQQSIIVNEYD---IKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGK 177 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 ++ + L + + G Y + +V I RLR+K+ + + P IKTV GY Sbjct: 178 VVPSEELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGY 229 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 120/237 (50%), Gaps = 14/237 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ +ED+ V ++ + K + G + + EN DL++LDIMLP DG+T Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 ICR +R + PI++LT+ D++ + ++ EMGA DY+ K P L+AR++ +R+ + Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKAT 121 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEIS-LSTADFELLWELATHAGQIM 181 ++ + TI+ R V L + L+ +F+LL+ L + Q+ Sbjct: 122 G-------KAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVF 174 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKL--LDNAAEPYRIKTVRNKGYLFAPH 236 R+ LL+ + G + G +R+VDV I RLRKKL D + TV GY F Sbjct: 175 SREQLLEQVWGYQFYGDERTVDVHIKRLRKKLASEDKP----FLYTVWGVGYKFDED 227 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 319 bits (819), Expect = 6e-86, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 125/235 (53%), Gaps = 7/235 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ +DD V +I Y K +++ G +A E + +E PD+V+LD+M+P DG Sbjct: 34 KVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGFE 93 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 CR++R KW PI++LT+ D + + +L LE+GA DY+ K P ++AR+R +R+ + Sbjct: 94 ACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQPK 153 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + F LTID R V +A ++S +F+LL +L G + Sbjct: 154 P-----KVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWS 208 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R+ LL+ + G Y G R++DV I ++R++L + I+TV GY F + Sbjct: 209 REQLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYD--CIQTVWGIGYKFGVDS 261 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 319 bits (818), Expect = 6e-86, Method: Composition-based stats. Identities = 108/236 (45%), Positives = 151/236 (63%), Gaps = 8/236 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VEDD + L YL K+ M V +E G++A I+ E PDLV+LD+MLPG DG+ Sbjct: 10 PRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSDGL 69 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 T+CR++R + PI++LT+ DM+ +L LEMGA DY+ K P VLLAR+R LR++E Sbjct: 70 TVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSEN 129 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 A S + L FG L ID R VTL + ++A+++LLW LA++AG+I+ Sbjct: 130 A--------PSEEIPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRIL 181 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R+ + + LRG+ YDG DRS+DV ISR+R K+ D+ P RIKTVR+KGYLF Sbjct: 182 SREDIFERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEG 237 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 319 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 121/234 (51%), Gaps = 5/234 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ EDD ++ LIA +L K Q+ G +A + DLV+LDIM+P DG Sbjct: 6 TTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHMDGY 65 Query: 62 TICRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + R +R ++ PI+ L++ SD + I L MGA DY+ K P LLAR+ LR+ Sbjct: 66 EVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLRRFR 125 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 Q + + A+ G LTID R VTL N I L+ +F++L+ LA+H ++ Sbjct: 126 QLNQPVAAPTHAAS---AIVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHPKKV 182 Query: 181 MDRDALLKNLRGVS-YDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + + + + G + Y+ +V V I LRKKL ++ IKTV GY F Sbjct: 183 FSAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAF 236 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 7/233 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M +++ VED+ + +A L K + TV G A R D+VLLD+MLPG G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ LRA+ S P++++T+ DS+++ ++ LE+GA DY+ K L+AR+R LR+ Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGA 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 L G + +D VV++ I+L +F+LL L ++G++ Sbjct: 121 DNDDA-------GADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRV 173 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + R L+ + G Y G +++DV + RLR K+ ++ A P + TVR GY Sbjct: 174 LTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKL 226 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 129/233 (55%), Gaps = 7/233 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+DDA++ +L+ YL + +V+ P G+ E + +P +V+LDIM+PGKDG+ + Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 RDLR + P+++LT+ D + I+ LE+GA DYI K P LLAR++ LR+ + Sbjct: 67 LRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKG-- 124 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 E + ++ + + ++ + + + LS+ +F+LL L + G+ M R Sbjct: 125 -----PENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTR 179 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 D L+ ++ G ++ DRS+DV IS+LR RIKTV GY+F Sbjct: 180 DDLMTSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFVSE 232 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 5/235 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ V+D+ + L+ +LAK + G A RE D ++LDIMLP DG+ Sbjct: 10 KRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGI 69 Query: 62 TICRDLRAK-WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ LR+K PI+++++ + + +LALE+GA DY+ K P LLAR++ LR+ E Sbjct: 70 EVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTE 129 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 G + L + P V + L+ ++ELL L H Sbjct: 130 AEISGDGEEHREPF----YTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMT 185 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + R+ LL+ + G + R VDV I +LR+K+ DN P I+T+R GY F Sbjct: 186 LTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKE 240 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 125/235 (53%), Gaps = 6/235 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VEDD ++ L+ +L V V GD L E DL++LDIMLPG DG Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 62 TICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ICR LR + PI+++T+ +++ +L LE+GA DYI K +LAR++ R+ E Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T+G + + + G + ++P R VT+ + L++ +FELL A H G+ Sbjct: 127 VDQETQGQADDTP-----IELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRA 181 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 RD LL + G Y G +V+ I+RLR K+ + +EP +KTV GY FA Sbjct: 182 FSRDELLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAE 236 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 317 bits (815), Expect = 1e-85, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 120/235 (51%), Gaps = 13/235 (5%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ V+DD ++ +++ L V + G E + + N + V+LDIMLP DG Sbjct: 4 QQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGW 63 Query: 62 TICRDLRA---KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 +C +R PI++LT+ + + I+ L++GA DY++K P L+AR+R +R+ Sbjct: 64 EVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRR 123 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 ++ K L G LT+D + V + + E+ L +FELL+ L + Sbjct: 124 DQDFKDKD----------KILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPE 173 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ R+ +L+ + G S+ G R+VD + R+RKKL + I+TV GY F Sbjct: 174 RVFTREEILEKIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKF 228 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 116/238 (48%), Gaps = 11/238 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ +DD + ++ L V G +A + L + PDLV+LD+M+P DG Sbjct: 5 RRILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGF 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C +RA + PI+LLT+ ++ ++ +GA DY+ K L+ R+ LR+ Sbjct: 65 AVCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRM-- 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 +L + L FG L I+ R V + + L+ +F+LLW +A+H G Sbjct: 123 ---------PTLPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPF 173 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 R++LL + +V V I RLR+K+ DN A+P IKTV GY F P E Sbjct: 174 TRESLLARVWHGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDPAGAE 231 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 2/232 (0%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 T++ VED+ ++ ++ +L + V A E + + DLV+LD+M+PG DG T Sbjct: 6 TVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPGLDGWT 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 CR +R PI+ LT+ + + +L E+GA DY++K P L+ R++ LR+ + Sbjct: 66 TCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLRR-RSS 124 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T + + +TP K LHF L++ P R + +SLS +++LL LA +AG+++ Sbjct: 125 TPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNAGRVLS 184 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLD-NAAEPYRIKTVRNKGYLF 233 RD LL + G + G R+VD + RLR+KL + A + TVR GY F Sbjct: 185 RDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKF 236 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 122/233 (52%), Gaps = 7/233 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+D+A + ++ L+ V G++A +E PD+V+LDIM+P DG Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C+++R PI++LT+L + I LE+GA DY++K P L AR+R LR+ +A Sbjct: 76 VCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNKA 135 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + LT ++F LTID R + N I L+ +F LL L + +GQ Sbjct: 136 AFS-----SHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFS 190 Query: 183 RDALLKNLRGV--SYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R +L+ + G R VDV ISRLR KL + + P I T R GYLF Sbjct: 191 RADILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 121/231 (52%), Gaps = 3/231 (1%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+DD ++ L+ YL V G + E + V+LD+M+P DG Sbjct: 12 QILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGFE 71 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 + + LR + P+++LT++ + + I+ LEMGA DY+ KT LLARLR R++ Sbjct: 72 MLKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHR-- 129 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 L+ S L G L I R L+ ++L+ +++LL LA +++ Sbjct: 130 -LSMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLS 188 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD LL + G SYD DRSVDV IS LR+KL ++ P I+TVR GY+F Sbjct: 189 RDQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMF 239 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 129/236 (54%), Gaps = 2/236 (0%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+DD E+ +L+ YL KH + G + + DLV+LD+MLPG DG+T Sbjct: 6 HILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPGDDGLT 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR LRA+ P+++LT+LD D + I+ LE+GA DY+ K P L+AR+R LR+ Sbjct: 66 LCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRARAL 125 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPI-NRVVTLANTEISLSTADFELLWELATHAGQIM 181 E + + F T+D + +V ++LS A++ LL + ++M Sbjct: 126 PENIAKAEPE-AMSRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYPNRVM 184 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 RD LL +G + + DRS+DV +SRLR +L DN EP IKTVR GY A Sbjct: 185 SRDQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLATDV 240 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 116/237 (48%), Gaps = 12/237 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ +D+ ++ L+ + L K + G +A E + E LVLLD+M+P DG Sbjct: 5 MFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDG 64 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +T C +R + PI+LLT+ +++ I L++GA DYI K P LLAR+ LR+ Sbjct: 65 LTACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTH 124 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 S G L+ID R V++ ++L+ +F+LL+ T+ ++ Sbjct: 125 SF---------SKEQEATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKV 175 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R+ LL + G Y G R+VD I LR KL + I+TV GY F + Sbjct: 176 FSREQLLDQIWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEANG 229 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 125/233 (53%), Gaps = 8/233 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M +++ VED+ + +A L K + TV G A R D+VLLD+MLPG G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ LRA+ S P++++T+ DS+++ ++ LE+GA DY+ K L+AR+R LR+ Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR-- 118 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 G + S L G + +D VV++ I+L +F+LL L ++G++ Sbjct: 119 ------GGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRV 172 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + R L+ + G Y G +++DV + RLR K+ + A P + TVR GY Sbjct: 173 LTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKL 225 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 87/233 (37%), Positives = 128/233 (54%), Gaps = 8/233 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M TI+ VEDD+ + ++ + QV G E R +PDL++LD+MLPG DG Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++CR + + + PIVLLT+L + + I LE+GA DY++K LLAR+R LR NE Sbjct: 61 FSVCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + T L G + +D +R V + EI LS +F+LL L +AG Sbjct: 121 RQRQTPS--------SNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVA 172 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + RD LL+ + G + G +R++DV + LR+KL + A P I+TVR GY F Sbjct: 173 LSRDLLLERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCF 225 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 315 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 6/233 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ +EDD ++ +L+ L+ + G E L N D+++LD+MLP DG+ Sbjct: 4 KKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGL 63 Query: 62 TICRDLRAKWS-GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ LR PI++LTS + + + +L GA DYI K L AR+ H+R+ Sbjct: 64 EVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYR 123 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + + K F L +D N VTLA+ EI ++ +F+LL + G+ Sbjct: 124 PEK-----EPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRT 178 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R LL + G SY G + +V+ I+RLR K+ +N A+P I TV GY F Sbjct: 179 YSRTELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 315 bits (809), Expect = 8e-85, Method: Composition-based stats. Identities = 79/230 (34%), Positives = 127/230 (55%), Gaps = 4/230 (1%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD ++ ++ AYL+K ++ G +A + PDL++LD+ LP DG + Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR +R K PI+ L+ + D++ I+ +G DYI K P VL+A+++ H+R+ ++ + Sbjct: 66 CRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYKELS 125 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + + + +AL FG L ID VT ISL+ +F+LL LA +AG++ Sbjct: 126 GSP----KAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSA 181 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + L ++ G G R+V V IS LRKK+ + A P I TVR GY F Sbjct: 182 EHLFDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKF 231 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 112/233 (48%), Gaps = 9/233 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+DDA V ++ YL V G A PDLV+LD+MLPG DG+ Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 + R LRA P+++LT+ + + I LE+GA DY+ K P L R++ LR+ Sbjct: 117 VFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRAN-- 174 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + L GTL +D R T + L+ +F+LL L G+ Sbjct: 175 ------ETVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFT 228 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R LL+++ G SY G +V V I RLR+K+ D+ P + TV GY + P Sbjct: 229 RGELLEHVWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDP 280 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 116/237 (48%), Gaps = 7/237 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+ + +I AYL K V G A + EN L++LD+MLP G Sbjct: 6 KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEE 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C +RA S PI++LT+ + I + MGA DY+ K L+ R+R LR+ + Sbjct: 66 VCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYR- 124 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + + G L +D VV ++L+T +F++L ++ Q+ Sbjct: 125 ------DFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFS 178 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 R+ L++ G +Y+G DR+VD I +R+K+ N EP I TV GY F P E Sbjct: 179 REKLVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIPSNGE 235 >UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=9 Tax=Gammaproteobacteria RepID=Q4ZQ24_PSEU2 Length = 247 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 101/237 (42%), Positives = 145/237 (61%), Gaps = 7/237 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ VEDD + L + YL H ++V++E G A I+ E PDLV+LD+MLPG+DG + Sbjct: 9 HVLIVEDDQRLAELTSDYLQNHGLRVSIEGDGALAAARIIAEQPDLVILDLMLPGEDGFS 68 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 ICR +R ++ GPI++LT+ D +HI L+ GA D++ K P VLLAR++ LR++E Sbjct: 69 ICRSVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRRSE-- 126 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + L FG L +D R L I L+ A+F+LLW L +AG+ + Sbjct: 127 -----APQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLS 181 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 R+ + LRGV YDG DRS+DV ISR+R K+ D+ P IKTVR+KGYLF P A + Sbjct: 182 REEIFTALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQ 238 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 75/243 (30%), Positives = 122/243 (50%), Gaps = 19/243 (7%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILR---------ENPDLVLLD 52 + I+ VED+A + ++A L + V V G A ENPDLV+LD Sbjct: 24 SRILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLD 83 Query: 53 IMLPGKDGMTICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLAR 111 +MLP +G+ CR LR + + PI++L++ D++ + ++ LE+GA DY+ K L+AR Sbjct: 84 LMLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVAR 143 Query: 112 LRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLW 171 R LR+++ L + L + P V L + E++LS +F LL Sbjct: 144 CRALLRRSQNQPAETPA---------VLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLE 194 Query: 172 ELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 H ++ RD LL+ + G+ + G +++DV I LR+K+ N + P + TVR GY Sbjct: 195 LFMRHPRRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGY 254 Query: 232 LFA 234 Sbjct: 255 RLG 257 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 116/232 (50%), Gaps = 13/232 (5%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 T++ V+D+ ++ L+ YL + G++A + + D++L+D+M+P DG Sbjct: 4 KTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGF 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 T+C +R + PI+ LT+ + + + L++G DYI+K P L+AR+ +R+ Sbjct: 64 TLCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYH 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + L FG L ID R VT+ + L+ +F+LL LA H GQ+ Sbjct: 124 ----------NKQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVF 173 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LL + G Y G R+VD I LR KL + I+TV GY F Sbjct: 174 SREDLLAQVWGYDYTGNARTVDTHIKTLRMKLKQASD---FIQTVWGIGYKF 222 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 122/236 (51%), Gaps = 5/236 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ +D+ + + YL + +V V G++A PDL++LD+M+P DG+ Sbjct: 4 NIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGLE 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C +R PI++LT+ + + +L L MGA DY+ K P L+ R+ LR+ Sbjct: 64 VCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGWR 123 Query: 123 TLTKGLQE-----TSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + + + +A++ L+I P R V++ +++ L+ +F+LL LA + Sbjct: 124 SEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMYP 183 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 G++ R LL + +++DG +V V + RLR+K+ N ++P IKTV GY Sbjct: 184 GKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 314 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 115/232 (49%), Gaps = 4/232 (1%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ ++D+ E+ LI YL +V G I E +V+LD+M+PG DG Sbjct: 1 MFNVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C +R ++ PI++L++ D++ I L GA DY++K P L+AR++ +R+ Sbjct: 61 FQVCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRY- 119 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + + F +TI+ N V E+ L+ ++E+L LA + G + Sbjct: 120 ---VFLNEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTV 176 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + + K + Y + +V V I RLR+K+ +N EP I+TV GY Sbjct: 177 FSAEDIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYK 228 >UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromonadales RepID=Q47ZA2_COLP3 Length = 238 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 102/237 (43%), Positives = 150/237 (63%), Gaps = 8/237 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VEDD ++ L+ +L V E RGD + + +PDL++LD+MLPGKDG Sbjct: 9 KKILLVEDDRQLSDLVTDFLTSEGFHVKQEFRGDTVAKRVKLFSPDLIILDVMLPGKDGF 68 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CRDLR +++GP+++LT+ +D + +L LE+GA DY++K P VLLAR+ LR+ + Sbjct: 69 GVCRDLRPEFNGPVLMLTAKSTDFDQVLGLEIGADDYVIKPVEPRVLLARVNALLRRGDL 128 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 ++ E + G L I+ +R VTL + + L++ +F+LLW LA AG++ Sbjct: 129 PNQSEEKGE--------ITCGGLYINKASRKVTLQDENVDLTSQEFDLLWLLAGKAGEVQ 180 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 +RD + K + G YDGLDRSVDV ISRLRKKL D+ P+RIKT+ +GYLF P AW Sbjct: 181 NRDYIYKAVIGREYDGLDRSVDVRISRLRKKLHDSTDTPFRIKTIWGQGYLFVPDAW 237 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 3/234 (1%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VED+ +V L+A L QV + G A ++I E +L +LDIMLP DG Sbjct: 1 MRKILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + + +R K S P+++LT+ D+DM+ ++ +GA DYI+K L AR++ LR+ E Sbjct: 61 SEVLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T + E + LH G+L I+ V + ISL +F LL LA ++ Sbjct: 121 G---THHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRV 177 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + + +++ G + D +V V ISRLR K+ ++ A P R++TVR GY Sbjct: 178 VTIAQIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLV 231 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 90/243 (37%), Positives = 135/243 (55%), Gaps = 15/243 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETI--LRENPDLVLLDIMLPGKD 59 I+ +EDD ++ LI+ YLA + +V P G + + + DL++LD+MLP D Sbjct: 3 KQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPDMD 62 Query: 60 GMTICRDLR-----AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRL 114 GM +C+ +R PIV+LT+ + +L LEMGA DYI K P LLAR+R Sbjct: 63 GMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARIRA 122 Query: 115 HLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELA 174 LR++EQ ++ L FG L++ P + VT+ + + L+T F+LL A Sbjct: 123 VLRRHEQPNQADSQSDS-------LTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHYFA 175 Query: 175 THAGQIMDRDALLKNLRGVS-YDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 THAG++++R+ L + + D +DR++DV ISRLR + DN +P RI TVR GY F Sbjct: 176 THAGKVLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 235 Query: 234 APH 236 A Sbjct: 236 ATD 238 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 115/240 (47%), Gaps = 16/240 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDD E+ LI L + V G+ + PDL++LD+MLP DG Sbjct: 11 MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70 Query: 61 MTICRDLRAK--WSGP-IVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 + +C +R + P I++LT+ +++ I+ L GA DY++K P L+AR+R LR Sbjct: 71 LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTL----ANTEISLSTADFELLWEL 173 + + G + +D + E+ L+ +F LL Sbjct: 131 RQLRQGQPVG---------QIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATF 181 Query: 174 ATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ G++ +R L++ L G + G +R VD I RLRKK+ + A P IKTV GY F Sbjct: 182 MSYPGRVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 123/233 (52%), Gaps = 7/233 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+A + ++ L +V G++A +E P LV+LD+M+P DG Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C++LR + PI++LT+L + I LE+GA DY++K P L AR+R LR+ ++ Sbjct: 67 VCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADKI 126 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T G+ + + + G L ID R V N + L+ +F LL L + AG+ Sbjct: 127 TTNLGVPNSGI-----ISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFS 181 Query: 183 RDALLKNLRGV--SYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R ++L+ + G R VDV ISRLR KL D+ + P I T R GYLF Sbjct: 182 RASILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 81/239 (33%), Positives = 126/239 (52%), Gaps = 8/239 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ V+D+ + +LI L + + QV G A E + + D V++D+MLP DG+ Sbjct: 3 KTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGI 62 Query: 62 TICRDLRA-KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + +R PI++LT+ S ++ IL LE+GA DYI K P LL+R+++ LR+ + Sbjct: 63 EATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTD 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 +A + T L + ID VV N +I L+ +F+LL L +A Q+ Sbjct: 123 RAINLAEIDPT-------LQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQV 175 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 + RD +L+ + G Y G R VD+ IS LR KL ++ P IKT+R GY F + Sbjct: 176 LSRDQILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVSKKGD 234 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 3/230 (1%) Query: 5 VFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTIC 64 + VED+ E+ +++ +YL + +V + G +A + +PD+V+LD+ LPG DG+ +C Sbjct: 67 MVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVC 126 Query: 65 RDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQATL 124 R LR +V+LT+ +++ ++ L +GA DY+ K P LLARL+ LR+ Sbjct: 127 RRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRR---PRP 183 Query: 125 TKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDRD 184 G + T L FG L+ID R V L + + L+ +F+LL LA + R Sbjct: 184 KTGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRR 243 Query: 185 ALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 L+ + G + G + VDV I LR+KL D+A+ ++TVR GY Sbjct: 244 QLIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRMG 293 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 123/237 (51%), Gaps = 5/237 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ ++D+ EV LI YL K QV G A E NPDL++LD++LP +G+ Sbjct: 5 KILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNGLE 64 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C++LR PI+ L+ +DM+ IL L +G DYI K P+ L+AR+ HLR+N Sbjct: 65 LCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNRIL 124 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T +T+ L+ LTID N + + + + L+ +FE+L L+ H + Sbjct: 125 T-----NQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFS 179 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 L ++ GV G R+V V IS LRKK+ + A P I T++ GY A E Sbjct: 180 LTQLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLDTTAPE 236 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 118/233 (50%), Gaps = 4/233 (1%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ V+D+ + ++ L + ++ G+ A E+ +E+PDLV+LD+MLP DG Sbjct: 5 YKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGY 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +R PI++L++ ++ + +GA DY++K P L R++ LR++ Sbjct: 65 EVCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRS-- 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 K + + + G L I+ + V + + L+ +FELL +A H Q+ Sbjct: 123 --FDKEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVF 180 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ L ++ Y ++ V I +LR+K+ + A+P I+TV GY F+ Sbjct: 181 TREQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKFS 233 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 312 bits (801), Expect = 7e-84, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 133/235 (56%), Gaps = 6/235 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +I+ VEDD E SLIA YL + V+ G + + DL+++D+MLP +DG+ Sbjct: 15 PSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGL 74 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ++CR +RA+ PI++LT+ D++ I+ LEMGA DY+ K P LLAR+ LR+ Sbjct: 75 SLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRRQAS 134 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQI 180 A L + F +D R + A ++L++A+F+LL AG++ Sbjct: 135 A-----LNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRV 189 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + R+ LL+ +G + DRS+DV +SR+R+K+ + A+ IKTVR+ GY+F P Sbjct: 190 LSREVLLELTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMFTP 244 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 116/240 (48%), Gaps = 10/240 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+D+ + LI L V G+ E + PDL++LD+MLP DG+ Sbjct: 3 KKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGI 62 Query: 62 TICRDLRAKWS-GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR+LR + + PIV+LT+L + I L+ GA DY+ K P L++R++ R+ + Sbjct: 63 QVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQ 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 G LT+ R V + I L+ +FELL L H G++ Sbjct: 123 TLPGQ--------AESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKV 174 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF-APHAWE 239 + R LL + + G R VDV IS LR K+ NA P I TVRN GY AP+ + Sbjct: 175 LSRQQLLHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKLHAPNMAD 234 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 131/238 (55%), Gaps = 12/238 (5%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ ++DD + +L+ YL + V + + PDLV+LD+MLP DG+ Sbjct: 16 TRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGL 75 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR++RA PI++LT+ + I+ LEMGA DY+ K P L+AR++ LR+ + Sbjct: 76 AVCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRRGTR 135 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 +AL G L ++ R V LA E+ L+TA+FELL LA + G++M Sbjct: 136 ------------DDAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVM 183 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 RD +L RG+ +D DRS+D+ +SRLR+KL D+ P I+TVR GY F E Sbjct: 184 SRDRILDGTRGIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIGGGRE 241 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 123/242 (50%), Gaps = 9/242 (3%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILR-ENPDLVLLDIMLPGK 58 M I+ V+D+ E+ L+ L V+ G+ A + + E P+L+LLDIM+P Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 59 DGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 G +C +R +W PI+ L++ ++ ++ E+GA DYI K LLAR+R HLR+ Sbjct: 61 SGYELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRR 120 Query: 119 NEQ---ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELAT 175 E+ T + +ET+ +P L F L I V + N +I LST +F+LL LA Sbjct: 121 YERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAE 180 Query: 176 HAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 +AG + R+ + + G Y G +V V I LR+KL E IKT GY+F Sbjct: 181 NAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE---TERQFIKTQWGTGYVFIG 236 Query: 236 HA 237 Sbjct: 237 EK 238 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 81/238 (34%), Positives = 125/238 (52%), Gaps = 6/238 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+DD + +L+ +L V Q + + RE L++LD MLP +DG++ Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 63 ICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ICR LR PI++LT+ SD + I LE GA DY+ K P LLAR+R LR+ + Sbjct: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 Q+ + + FG+ +D R +T ++L+T +F +L L H + + Sbjct: 142 EVPGAPSQQV-----EVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPL 196 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 RD L+ RG + ++RS+DV +SRLR+ + DN A I+TV GY+F P E Sbjct: 197 TRDKLMNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPDGAE 254 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 121/237 (51%), Gaps = 6/237 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ ++D+ + L L + QV G + + PDLVLLD+MLP G Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+++ + + P++++++ D ++ +L LE+GA DYI K L+AR+++ LR+ E Sbjct: 61 YDLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 E L G L I+P +VV T+I L+ ++ +L L +I Sbjct: 121 H------NDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKI 174 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 RD LL+ + G Y G RSVD+ I RLRKK+ +++ P +KT+ GY + Sbjct: 175 FTRDELLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGGDS 231 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 6/233 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDD ++ + YL + +V G ++ DL+LLDIMLPG DG Sbjct: 1 MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR+LR P++++T+ +++ + L +GA DYI+K P L+AR+R H+ + E Sbjct: 61 FAVCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + ++ + G L I V L E+ + +FELL LA H + Sbjct: 121 RILASVKPEQ------HVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIV 174 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+AL + + G G +V V I+R+R+K+ ++ A P ++T+R GY F Sbjct: 175 FSREALFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRF 227 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 124/234 (52%), Gaps = 8/234 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 T++ +ED+ + ++ AYL K QV G E ++NPD+V+LD+MLP G Sbjct: 8 YTVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGE 67 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 I R +R + PI++LT+ S+ I L +GA DY++K P ++ARL+ LR+ + Sbjct: 68 EIARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGK 127 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 E + + G +TID + + + L TEISL+ +F++L LA + ++ Sbjct: 128 --------EPGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVF 179 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R+ L + G ++G R++D I LR+K+ N +P IKTV GY F Sbjct: 180 SRENLADRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQFGK 233 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 311 bits (798), Expect = 1e-83, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 126/240 (52%), Gaps = 6/240 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M TI+ V+D+ + +L+ L + +V G QA L++ D ++LD+MLP DG Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 61 MTICRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + + + +R AK PI++LT+ D++ + I+ LE+GA DY+ K P ++AR+R R+ Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 T+ +++ + + G L++D + + ++ L+ +FELL + Sbjct: 121 -----TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNK 175 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 + R+ LL + G Y R VD+ +S LR+K+ DN P +KTVR GY A + Sbjct: 176 VQSREKLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDPAHD 235 >UniRef50_Q3KAS5 Two-component system, response regulator n=2 Tax=Proteobacteria RepID=Q3KAS5_PSEPF Length = 235 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 112/237 (47%), Positives = 149/237 (62%), Gaps = 10/237 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ VEDD + +LIA +L +H +V RGD A L P +V+LD+MLPG+ G+ Sbjct: 8 RVLLVEDDERLAALIAHFLEQHGYEVRTVHRGDLAVAAFLEFKPKVVVLDLMLPGQSGLH 67 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR++R+ PIV+LT+ + D++HIL LE GA DY++K P VLLARLR R+ Sbjct: 68 VCREIRSVSDTPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRR---- 123 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 Q +L FG L ID R V LA I L+T +FELLW LA+ AG+I+ Sbjct: 124 ------QVPDSGVVSSLEFGNLIIDRSCREVRLAGELIELTTMEFELLWLLASAAGKILS 177 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 RD +L +RG+++DGL+RSVDV IS+LR KL DN EP IKTV KGYLF P AWE Sbjct: 178 RDDILNRMRGIAFDGLNRSVDVYISKLRNKLKDNPREPVCIKTVWGKGYLFNPFAWE 234 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 107/240 (44%), Positives = 147/240 (61%), Gaps = 9/240 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I VEDD+ + LIA+YL ++D V V RGD + R+ PDLV+LD+MLPG DG Sbjct: 47 MPNIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDG 106 Query: 61 MTICRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + +CR LR + PI++LT+ D + +L LEMGA DY+ K P VLLAR+R LR++ Sbjct: 107 LQLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRS 166 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + G L ID R V+ E+ LS+ ++ LL LA +AG+ Sbjct: 167 S--------VNEPRLDNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGE 218 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 +M+RD +L+ LRG+ ++G DRSVDVAIS+LR+K DNA E +IKTV KGYLF+ WE Sbjct: 219 VMNRDRILQQLRGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRVEWE 278 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 129/236 (54%), Gaps = 7/236 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETIL---RENPDLVLLDIMLPG 57 M IV VED+ E+ +L+ L + +V V G A E + + PDL++LD+MLP Sbjct: 1 MADIVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPN 60 Query: 58 KDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 DG+ ICR +R PI++LT+ ++++ +L LE+GA DY+ K L AR+ LR Sbjct: 61 VDGLEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILR 120 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + E ++ + + G LTIDP++R VT + L+ +F+LL LA + Sbjct: 121 RVEMMRALSRTEDGTTR----IDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANP 176 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 G++ RD LL + G Y G+DR+VD I RLRKKL + RI T+ GY + Sbjct: 177 GRVFSRDYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKY 232 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 120/240 (50%), Gaps = 8/240 (3%) Query: 1 MNTI--VFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGK 58 M I + VED+ ++ ++I YL+ H + G +A + PD V+LD+ LP Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 59 DGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 DG+ ICR +R + I++L++ SD + +L L GA DY+ K + L+AR+ HLR+ Sbjct: 61 DGIEICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 120 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 ++ +Q LH + I+ + N I LS +FELL+ LA + Sbjct: 121 QDRWLQDHDVQ------KDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRN 174 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 Q+ + LL + G G + ++ V I R+R+K+ N + P ++TV GY F+ Sbjct: 175 QVFSKSQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKFSTSNH 234 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 120/233 (51%), Gaps = 11/233 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ V+D+A + ++ AYL +V G + + L E PDL++LD+MLPG DGM Sbjct: 3 PTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGM 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 I LR K I++LT+ +++ + L +GA DY+ K P L+AR+ LR+ Sbjct: 63 EITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRG 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + F + IDP R A + L+ +F+LL LA + +++ Sbjct: 123 KPVKSS----------VMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVL 172 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ L++ + G + G DR VDV +S++R+K+ E I+T R GY F Sbjct: 173 SREDLIEKVWGADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRFV 224 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 118/237 (49%), Gaps = 11/237 (4%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 MN I+ V+D+ ++ ++ A+L KHD + + G +A + NPDL++LD+MLP Sbjct: 1 MNPKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEIS 60 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G +C+ +R PI++LT+ ++ + + GA DY++K LLAR++ LR++ Sbjct: 61 GEEVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRS 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 Q+ G L I P V + + L+ +F +L L + GQ Sbjct: 121 N--------QKAEKAEIFVYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQ 172 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 + R+ L K + G+ Y G DR++D I +RKKL N + I TV GY F Sbjct: 173 VFTREQLAKKVMGLEYKGYDRTIDAHIKNIRKKL--NLEKNQLIITVYGVGYKFEGD 227 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 10/234 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ +ED+ + +I AYL + V G +A +++ D V+LD+MLP G Sbjct: 6 KRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGE 65 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 IC+ +R + PI++LT+ + + I L++GA DY+ K P L+AR+R +R+ Sbjct: 66 EICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 L L E L+ G L +D + + + L+ +F+LL ++G++ Sbjct: 126 EGLKAHLIE--------LNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVF 177 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 RD L+ + G Y G DR++DV I LR K+ I TV GY F Sbjct: 178 SRDELVVKVLGYDYVGYDRTIDVHIKNLRHKIE--CEYYKYIVTVYGVGYRFVK 229 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 127/230 (55%), Gaps = 10/230 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VED+ ++ +AAYL + RGD+A + +E PDLVLLDIMLPGKDGM + Sbjct: 7 ILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPGKDGMEV 66 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C++LR+ PI++LT+ +++ +L LE+GA DYI K P ++AR++ LR++ Sbjct: 67 CKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLRRSN--- 123 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 T K + G + +D +R V++ + L+ ++F +L + + ++ R Sbjct: 124 -------TPQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRPNRVFSR 176 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + LL G ++G DR++D I LRKK+ + I ++ GY F Sbjct: 177 NELLDLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKF 226 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 120/236 (50%), Gaps = 5/236 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ +D+ E+ L++ YL K + G +A + I D+ ++DIM+P DG Sbjct: 1 MARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + R +R + P+++L++ + IL L++GA DYI K +LAR++ LR+ Sbjct: 61 YHLVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYN 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 K + E + L G L ++ + N E+ L++ ++++L+ L + G++ Sbjct: 121 -----KSMSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKV 175 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 + + + + + G D ++ V IS LR K+ D++ P+ IKT+R GY + Sbjct: 176 FTKKQIFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDSN 231 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 121/233 (51%), Gaps = 6/233 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M+ I+ ++D+ E+ L+ L + V G + E +E PDL++LDIM+P DG Sbjct: 1 MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKA-KEMPDLIVLDIMMPDIDG 59 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR +R PIV L++ S+M+ I +G DY++K LLAR+ HLR+ + Sbjct: 60 YEVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREK 119 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 +A L + +L L+F +TID +R V + I L+ +F++L L+ H GQ+ Sbjct: 120 RAILLNEEGKRAL-----LNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQV 174 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ + + + G +G +V I +R K+ + + IKTV GY + Sbjct: 175 FSKEQIYEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKW 227 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 114/236 (48%), Gaps = 11/236 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 T++ V+D+ ++ +L+ +L V G A T+ E D VLLD+M+PG G Sbjct: 5 TTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGPSGY 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R +R P++ LT+ D + I L +GA D+I+K+ P ++AR++ LR+ + Sbjct: 65 DVLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRYRR 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 P L FG L ID V + + L+ +FELL A H Q+ Sbjct: 125 G---------EPAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVF 175 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R+ L + L G G +V V I RLR+K+ ++ A P I TV GY F A Sbjct: 176 TREQLFQRLWGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFDGEA 229 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 132/235 (56%), Gaps = 4/235 (1%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENP-DLVLLDIMLPGKDG 60 + I+ ++DD + +L+ Y + ++V G +++ P D+V+LDIMLP DG Sbjct: 3 HRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDIDG 62 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + +RA P+++LT+ + + I+ LE+GA DY+ K P LLAR++ LR+ Sbjct: 63 FETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRR-- 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 AT + S A+ FG++ ID RV+ + EI+++ + ++L L +H G Sbjct: 121 -ATASAEAAPVSSPSACAMVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTP 179 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + RD LL G ++ DRS+DV ISR+RKKL D+ + P IKTV KGY++A Sbjct: 180 LTRDRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMWAE 234 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 5/234 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ VEDD + ++I L K + G +A E EN +V++DIM+P DG+ Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 R +R K PI++L++ D + I+ L MGA DYI+K L+AR++ ++R+ Sbjct: 65 SMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIYY 124 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 TK ++E K +G + D N VT E++L+ + ++L + ++ Sbjct: 125 NETKSIKEN-----KIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFT 179 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 + + ++ G + +V V + RLR K+ D+ P I+TV GY Sbjct: 180 KVQIYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTGD 233 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 120/233 (51%), Gaps = 12/233 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+DDA + ++ L + + G++A + PD+VLLD+MLPG++G+ Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 IC+D+R + + PIV+LT+ ++ + LE GA DY+ K P L+AR+R LR+ E Sbjct: 77 ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRRGETG 136 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + L G + ID VT I+L+ +F+LL LA Q+ Sbjct: 137 QA------------ENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFT 184 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R+ LL+ + G + R V+V + RLR K+ + +P + TVR GY P Sbjct: 185 RELLLEQVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYKAGP 237 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 116/234 (49%), Gaps = 8/234 (3%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 M I+ V+D+ E+ L+ YL D V ++A + +E DL LLDIM+P Sbjct: 69 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 128 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G+ +C+ +R +++ PI++LT+ ++++ I L +GA DYI K P ++AR++ LR+ Sbjct: 129 GLELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRY 188 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 ++ + ++ + L L ++ L +SL+ +F +L L G Sbjct: 189 KRYNMG------TVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGN 242 Query: 180 IMDRDALLKNLRGVSYDG-LDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 ++ + L + Y + ++ V I LR+K+ D+ P IKTV GY Sbjct: 243 VVSAEELFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYK 296 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 309 bits (792), Expect = 8e-83, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 129/234 (55%), Gaps = 6/234 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I V+D ++ L+A YL + ++TV G++ + R+ PDL++LD+M+PG+DG+ Sbjct: 5 QHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGEDGL 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ++CR +R++ + P++ L++ D++ IL LEMG DY+ K P LLAR++ LR+ Sbjct: 65 SLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRR--- 121 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQI 180 T + S ++ FG ++ R + +SLS +F LL L G+I Sbjct: 122 --ATPASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEI 179 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + RD LL + G + + DRS+D ISRLR+K+ + P I+T GY F Sbjct: 180 VTRDELLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAFV 233 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 308 bits (791), Expect = 8e-83, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 117/235 (49%), Gaps = 8/235 (3%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 M ++ +EDD ++ L A YL KH +V G + + NP LVLLDI+LPG Sbjct: 1 MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMK 60 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G IC+ +R PI+ L+ + + L+ GA DY+ K L AR++ +LR++ Sbjct: 61 GYEICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRS 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + + P + G L ID + V ++SL T + +LL L + Sbjct: 121 K-------MNANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNH 173 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + + + + G+ + G ++V V IS LR+K+ +N ++P IKTVR GY F+ Sbjct: 174 VFSAEKIYDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFS 228 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 7/231 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+ E+ L+ YL + V +A E I + DL +LDIMLPG G+T Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 IC+ +R K + PI++LT D++++ I L +GA DYI K P L+AR++ LR+ ++ Sbjct: 64 ICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKF 123 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + K E + L I+ L ++SL+ +F +L L + G ++ Sbjct: 124 SGVKEQNE------NVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVS 177 Query: 183 RDALLKNLRGVSYDG-LDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + L + G Y + ++ V I LR+K+ D P IKTV GY Sbjct: 178 SELLFHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYK 228 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 121/238 (50%), Gaps = 7/238 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDM-QVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+D+ + ++ L K + +T G + I D++LLD+MLP DG Sbjct: 18 KILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDIDGF 77 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +R + PI+ +T+ SD++ + L +G DYI K P + AR+ + LR+ Sbjct: 78 ELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQHM 137 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 QE + LHF + ++ P ++T+ N + + + ELL L TH +I Sbjct: 138 ------TQEPNNGEKLNLHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIF 191 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 + L + + G++ G D++V + IS+LRKK+ +N P I +R GY F PH E Sbjct: 192 TAEQLYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFIPHTKE 249 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 82/232 (35%), Positives = 122/232 (52%), Gaps = 14/232 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 T++ VED+ + L+ Y K V G++A DL +LDIM+P DG+ Sbjct: 3 KTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGL 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR++R + PI+LLT+ + + +L E+GA DY+ K P VLLA+ + LR+ Sbjct: 63 AVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRT-- 120 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 +L L F LTI+ ++ V L E+ LS +++LL L+++ G + Sbjct: 121 ---------GTLNDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIAL 171 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD +L N+ G Y G R+VD I RLR+KLLD A I TVR GY F Sbjct: 172 SRDRILDNVWGYDYFGDIRTVDTNIKRLREKLLDKAN---YIATVRGSGYKF 220 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 9/238 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M TI+ V+D+ + + YL + G++A I PDL+LLDI +PG DG Sbjct: 1 MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + +CR++R++ S P++ L+ S M+ + E+GA DY+ K L AR++ ++R Sbjct: 61 LEVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYA 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 ++G + L +G L IDP + ISL+ + +LL A H Q+ Sbjct: 121 MNPSSEGPK---------LRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQV 171 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 + L + + G +V V IS LR+K+ P I+TVR GY F P Sbjct: 172 WTHEQLYDRIWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVPGKH 229 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 119/232 (51%), Gaps = 13/232 (5%) Query: 5 VFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTIC 64 + VEDD+++ L+ L D V V G + E + + +L++LD+MLP DG IC Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 65 RDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 R LR A S PI++LT+ + + + +L L++GA DY+ K P LAR+ LR+ Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 P L+F TLTI P + + + L+ +FELL LA +AG+ + Sbjct: 129 YN----------QPDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTL 178 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LL+ + G Y G R++D I RLR+K+ ++TV GY Sbjct: 179 KREQLLEQVWGYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKL 230 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 307 bits (787), Expect = 2e-82, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 11/233 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VED+ ++ +++ +L + +V + G +A + PDL++LD+MLPG G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 + +R K + PI++LT+ +++ +L LE+GA DYI K P L R++ LR++ Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPHE 124 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + L+I+P + +T ++L+ +F++L LA + GQ+ R Sbjct: 125 QVTN-----------VSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSR 173 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 +L+ + G Y+G +R++D IS LR K+ IKTV GY Sbjct: 174 LHILERVFGDIYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAE 226 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 119/231 (51%), Gaps = 5/231 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N+I+ V+DD ++ + A L + +V G++A + I + L +LDIM+P DG+ Sbjct: 19 NSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGI 78 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +R K S PI+ L++ SD++ ++ GA DYI+K +AR++ LR+ Sbjct: 79 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRY-- 136 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 T Q K + L ID ++R V L I+L+ ++++L+ +A ++ Sbjct: 137 ---TYFNQNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVF 193 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + + +++ + +V V I+RLR K+ +N EP I+ V GY Sbjct: 194 TIEEIYESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYK 244 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 127/233 (54%), Gaps = 7/233 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ +D+ ++ ++AAY K D+ + G++A + NP +VLLD+M+P +DG Sbjct: 1 MQHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR +RAK P++L+T+ D I+ L++GA DYI+K P+ ++AR+R LR+ Sbjct: 61 YEVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMT 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + +E T L L I+ + + T+ISL+ + E +W LA++ ++ Sbjct: 121 K-------KENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKV 173 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD LL +L G Y G R+VD I RLR KL + IKT+ GY F Sbjct: 174 FTRDNLLDSLWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKF 226 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 126/235 (53%), Gaps = 10/235 (4%) Query: 1 MN--TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGK 58 MN TI+ +DD + +++ L + +V G+QA + PD+V++DIM+P Sbjct: 1 MNNGTILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKL 60 Query: 59 DGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 DG+ + ++ K PI++L++ D ++ I+ +MG DY K PA L R++ LR+ Sbjct: 61 DGLEASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRR 120 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 ++ KG L + I+ R+V + E++L+ +F++LW +A+H Sbjct: 121 SKAVPEKKG--------KDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPN 172 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 QI R LL+ + ++G + +V V I RLR+K+ +AA+P IKTV GY F Sbjct: 173 QIFSRLQLLEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKF 227 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 10/233 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+DD V ++ YL + V + G+ A PDLV+LD+MLPG G+ Sbjct: 10 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 69 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR LR + P+V+LT+L + + ++ LE GA DY++K P L+ R+ LR+ + Sbjct: 70 VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRARTS 129 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 +G + L G L +D R TL E++L+ +F+LL L H G+ Sbjct: 130 QPAEG---------EVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFS 180 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R LL+ + G S+ G +V V + RLR+K+ + A P RI TV GY + P Sbjct: 181 RAELLEQVWGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYDP 232 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 126/235 (53%), Gaps = 5/235 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N I+ VEDD E+ L+ ++ + +V G A E ++ DL+LLD+ +P +G+ Sbjct: 8 NQILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGV 67 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR+LR + PI+++T+ +++ +L LE+GA DYI K L AR + +R+++ Sbjct: 68 EVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDA 127 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 A Q+T+ + L FG L ++ R VTL +I LS +F+LL LA + G+ Sbjct: 128 AN-----QQTNDSKTAELDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSY 182 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R LL + G ++ G + +V+ I+RLR K+ + P I T GY F Sbjct: 183 SRSELLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNED 237 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 124/233 (53%), Gaps = 5/233 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 IV ++DD ++ LI YL + G ++ + + PDL++LD+MLP ++G+ Sbjct: 3 KKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENGL 62 Query: 62 TICRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 IC+ LR K PI++LT+ +++ I+ LEMGA DY+ K P LLAR+ R++E Sbjct: 63 DICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRHE 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 K + K + F +P R + EI L++ +F LL +A Q Sbjct: 123 MELSEK----VNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQP 178 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + RD +++ +G D DRS+DV ISR+RK + ++ +P +KT GY+F Sbjct: 179 LSRDQIMQLAKGKELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVF 231 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 111/231 (48%), Gaps = 10/231 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ +EDD + +++ YL + +V + G+ LVL+D+MLP DG + Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C +RA PI+++++ +D + + + +GA DY+ K P L AR++ +R+ E++ Sbjct: 63 CEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERSY 122 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + L F + ID R V +ISL+ +FELL LA H G++ + Sbjct: 123 PQQ---------EDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTK 173 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + L + R+V V + +R KL D P I+TV GY F Sbjct: 174 EELYAAVWNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFI 223 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 17/233 (7%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+D+ ++ +++ YL K +V+ G++ + + DLV+LD+MLP KDG Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +I R+++ P+++LT+ D + + EMGA DYI K VLLAR++ LR Sbjct: 66 WSILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLR--- 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 +T+ + G L I+ + V+ + EI L+ +++LL L + Sbjct: 123 ---------KTNNMVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIA 173 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + R+ LL + G + G DR++D I LRKK+ NA IKT+R GY Sbjct: 174 LSREKLLNEVWGYDFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGYKL 221 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 86/236 (36%), Positives = 133/236 (56%), Gaps = 5/236 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ V+DD ++ SL+ + KH VT+ G + +E DLV+LD+ML G+DG Sbjct: 1 MPHLLLVDDDEDILSLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGEDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++C+ +RA P+++LT++ + ++ LE+GA DY+ K LLAR++ LR+ Sbjct: 61 FSLCQKMRAVSRVPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRTA 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTL-ANTEISLSTADFELLWELATHAGQ 179 + T ET L F +D R + N I LS +F+LL A H+ + Sbjct: 121 ELEATPTPSETRP----MLCFAGWRLDVARRELRSGDNALILLSGGEFDLLLAFAEHSQR 176 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 ++ RD LL RG+S+ DRS+DV +SRLR KL D+ +P I+TVRN GY+F P Sbjct: 177 VLTRDQLLDLARGLSHAAFDRSIDVQVSRLRHKLEDDPKKPSVIRTVRNGGYIFTP 232 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 10/233 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ ++D+A++ L+ +YL V G + PDL+LLDIM+P G+ Sbjct: 3 QTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGL 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 R + PI+LLT+ D + I+ LE+GA DYI K ++AR+R LR++ + Sbjct: 63 DFMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYK 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 A L G + ++ + + + L+ ++FE+L L G + Sbjct: 123 AQPQ----------ADVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVF 172 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R LL G +Y+G +R++DV I LR K+ + P I+TV GY FA Sbjct: 173 SRLDLLDRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFA 225 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 20/243 (8%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETI----------LRENPDLVLLD 52 I+ +ED+ + + L + V G +A I + L++LD Sbjct: 23 NILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILD 82 Query: 53 IMLPGKDGMTICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLAR 111 +MLPG +G+ +CR +R + + PI+++++ S+++ ++ LE+GA DY+ K +LAR Sbjct: 83 VMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLAR 142 Query: 112 LRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLW 171 R LR+ T L F L + P TL E++LS +++LL Sbjct: 143 CRALLRRTRIQQATLPP---------VLRFRDLCLYPQECRATLRGEELNLSPKEYKLLE 193 Query: 172 ELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 H ++ R+ LL + G + G ++VDV I LR+K+ + + P I TVR GY Sbjct: 194 LFMRHPRRVWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGY 253 Query: 232 LFA 234 F Sbjct: 254 RFG 256 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 4/232 (1%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDD + L YL D +V + G I DL++LD+MLP DG Sbjct: 1 MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 I R + P++++++ +++ I L +GA DYI K P L+AR++ H++ E Sbjct: 61 FDILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHIQNYE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + + + L I+ +R V + + E++L+ +F+LL +A + ++ Sbjct: 121 RLKNKFSDKLNN----NVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRV 176 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 +D L +++ G+ G +V V I R+R+K+ N ++P I+TV GY Sbjct: 177 FGKDELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYR 228 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 109/234 (46%), Gaps = 9/234 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ +EDD + + + L +V P G E D+VL+D+MLP DG Sbjct: 19 PRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGF 78 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 CR LR PI+++T+ + + LE GA DY+ K L AR+R LR++ Sbjct: 79 ECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 A G + + L I P VV + L+ +F LL ELA+ ++ Sbjct: 139 AGGPAG---------EVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVY 189 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R+ LL+ + G Y G R VDV + RLR K+ ++ A P + TVR GY P Sbjct: 190 SREQLLERVWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQP 243 >UniRef50_Q3JG93 Response regulator protein n=61 Tax=Proteobacteria RepID=Q3JG93_BURP1 Length = 288 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 98/238 (41%), Positives = 141/238 (59%), Gaps = 6/238 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ +EDD + LI YL ++ VTV RGD A + P LV+LD+MLP DGM Sbjct: 56 YRVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGM 115 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +RA + P+++LT+ + + LE GA DY+ K P VL+AR R LR+ + Sbjct: 116 EVCRRIRAFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQP 175 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + L FG L I P NR VT + L TA+F LL LA AG ++ Sbjct: 176 GASVEA------PASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVL 229 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 RD +LK LRG+ +DG+DRSVD IS+LR++ D ++EP++IKT+ +GYLF+P AW+ Sbjct: 230 SRDDILKQLRGIEFDGIDRSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWD 287 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 131/237 (55%), Gaps = 8/237 (3%) Query: 1 MNT---IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPG 57 M+T I+ V+DDAE+ L+ YL++ + +V D + R +LV+LD+MLPG Sbjct: 29 MHTKISILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPG 88 Query: 58 KDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 DG+T+ R++R + P+++LT+ + + I+ LE GA DY+ K P L+AR+ LR Sbjct: 89 TDGLTLSREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLR 148 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRV-VTLANTEISLSTADFELLWELATH 176 +++ A ++ + F + R V+ ++LS A+F LL Sbjct: 149 RSQGAKEVAP----NVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQT 204 Query: 177 AGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ RD L++ RG + D +RS+D+ +SRLR+KL D+ EP IKTVR GY+F Sbjct: 205 PRRLFSRDQLMEQARGRAMDAFERSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMF 261 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 7/234 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VEDDA++ +++ +L +V G + + + N D ++LD+MLPG DG+ Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64 Query: 62 TICRDLRAKWS-GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ICR RA PI++ ++ S+++ IL LE+GA DY+ K L+AR++ LR+ + Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 L S L L IDPI R ++ + L+ +F+LL+ A H G++ Sbjct: 125 ------ALARDSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKV 178 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R LL + G ++G + +V+ I+RLR K+ + AEP RI TV +GY A Sbjct: 179 FSRMDLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLA 232 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 6/236 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+D+ V ++ + + V G+ A + E DL++LDI LPG DG Sbjct: 1 MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDG 60 Query: 61 MTICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + R +RA+ P+++LT+ +++ ++ LE+GA DY++K P L+AR+R LR+ Sbjct: 61 FGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRT 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 +A+ + + L +D R T + +++L +F+LL LA+H GQ Sbjct: 121 AEASRLRQQIGDAAPTSS-----GLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQ 175 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + R+ LL + G R+VDV I RLR KL + AE I+T GY F Sbjct: 176 VFTREVLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIE 231 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 9/234 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ ED+ + S I L + +V G +A + ++ D++LLDIM+P DG Sbjct: 1 MTKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDG 60 Query: 61 MTICRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 +C R+K I++LT+ + + ++ L +GA DYI K PA LLAR++ LR+ Sbjct: 61 FAVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRV 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 E K +E L G ID + V A ++ ++ +++LL + Q Sbjct: 121 ETLRRRKQPRE--------LVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQ 172 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 +M RD LL + G +Y G ++VDV I RLR+K+ +N AEP I+T+ GY + Sbjct: 173 VMSRDELLDAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKW 226 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 79/237 (33%), Positives = 128/237 (54%), Gaps = 7/237 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQA-EETILRENPDLVLLDIMLPGKDG 60 I+ V+DD + +L+ YL + V V G + DL++LDIMLPG+DG Sbjct: 15 PRILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGEDG 74 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++I R L K P+++L++ D++ I+ LE+GA DY+ K P LLAR+R LR+ Sbjct: 75 LSIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQR 134 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 +G Q+ + + G IDP R L++ + L+ +++LL ++ Sbjct: 135 MEPDARGKQD------ERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRV 188 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 ++RD ++ L+G DRS+DV I+RLR+K+ N EP + T+ +GYLFAP Sbjct: 189 INRDQIMDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAPSG 245 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 121/235 (51%), Gaps = 14/235 (5%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 T+ VEDDA++ L+ +L V G+ + P+L LLDIM+PG DG+ Sbjct: 3 QTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGADGL 62 Query: 62 TICRDLRAKWSG---PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 ICR +R S P++ LT+ S+ + I L++GA DYI K P L+AR++ LR+ Sbjct: 63 EICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVLRR 122 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 E+ P + G + ID +T+ ++ + +F LL LA H G Sbjct: 123 FER-----------PLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARHPG 171 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ RD LL + ++ RSVDV + R+R+K+ +N +P +KTVR GY F Sbjct: 172 RVFTRDQLLDAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRF 226 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 112/232 (48%), Gaps = 11/232 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ V+DD + L+ +L V ++A E + D ++LDIM+PG++G Sbjct: 4 KTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGF 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 CR +RAK PI+ L++ +D++ I L +G DYI+KT P ++AR++ LR++ Sbjct: 64 AFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSA- 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 L FG LT++ R + + + L+ ++ELL H + Sbjct: 123 --------SNQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVF 174 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 D LL L G +V V +SRLR+K+ N +P I V GY F Sbjct: 175 SYDQLLDKLW--DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRF 224 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 12/232 (5%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDD + I YL + G +A+ LR PDLV+LD MLPG DG+ + Sbjct: 14 ILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGVDGLAL 73 Query: 64 CRDLRA-KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 C R ++ P+++LT+ + + + AL GA DY+ K L+AR++ LR+ + Sbjct: 74 CERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLRRAYAS 133 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + L +D R V L I L +F+LL +LA H G++ Sbjct: 134 GYRDCSPKN-----------GLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHPGRVYS 182 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 RD LL+ + G ++G R++DV + +LR+KL + P + TV GY FA Sbjct: 183 RDELLERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFA 234 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 112/234 (47%), Gaps = 6/234 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ VEDD E+ LIA L K G A E + + LV+LDIMLP G Sbjct: 6 KILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGYE 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 + + +R K + P+++L++ + + I+ L +GA DY+ K L AR++ LR+ Sbjct: 66 VLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYLNF 125 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + + + + ++ V + + ++L+ +FE+L + ++ Sbjct: 126 SWETDKR------TQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFT 179 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 ++ L K++ G +Y + +V V I RLR+K+ + + P I+T+ GY Sbjct: 180 KNQLFKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVEE 233 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 77/236 (32%), Positives = 118/236 (50%), Gaps = 12/236 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M T++ VED+A V +I YL +H +V V G + PDLVLLD+M+PG DG Sbjct: 22 MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + R RA P++ LT+ D++++ +L LE+GA DY+ K A LLAR+R +LR++ Sbjct: 82 LEFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRS- 140 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + P L G L +DP R + + L+ ++FEL+ G++ Sbjct: 141 ----------SEPLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRV 190 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R L G +R++DV + LR K+ +P I+TV GY P Sbjct: 191 FTRLE-LLEQLQEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPD 245 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 125/234 (53%), Gaps = 10/234 (4%) Query: 5 VFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTIC 64 + V+DDA + L YL V G A + + D+++LD+MLP DG + Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 65 RDLRAKWS-GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 ++R + + P+++LT+L + + I+ L+ GA DY++K P L++R+R LR+ A Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 +G K L L +D R V + ++L+ +F+LL+ LA+H Q+ R Sbjct: 122 ADEG---------KLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSR 172 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + LL + G+ +DG R+VDV ++RLR+KLL + ++TV +GY F A Sbjct: 173 EHLLDRVWGLDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFVVKA 226 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 115/232 (49%), Gaps = 11/232 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ VEDD V + + YL V G A + R +PDL++LD MLPG DG Sbjct: 40 RRVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGS 99 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +R++ PI+LLT++ S I LE GA DYI K P L+ R++ LR++ Sbjct: 100 EVCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRSIG 159 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 LTP G T+D + A E++L+ +F+LL L H GQ Sbjct: 160 ----------DLTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAF 209 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LLK++ G + G +V V + RLR+K+ + P + TV GY Sbjct: 210 SREQLLKSVWGWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +TI+ V+D+ + ++ L K QV GD A ++ DL +LDIM+PG +G Sbjct: 6 STILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGY 65 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR+LR + + P++ L++ DS+++ ++ LE+GA DY+ K L+AR+R LR+ Sbjct: 66 ELCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRR--- 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 G + +++ G +T+D + N I L+ +FELL L AG++ Sbjct: 123 -----GQMDAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVA 177 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LL+ G Y ++VD I RLR KL +P I+TVR GY F Sbjct: 178 SREDLLREAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRF 229 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 122/236 (51%), Gaps = 14/236 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I +EDD ++ L+ K V P G A E I +E PD+V+LD+M+P DG Sbjct: 1 MALIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDG 60 Query: 61 MTICRDLRAKWS---GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 + C+ +R+ P+++LT+ ++++ I+ LE+GA DY+ K LLAR++ LR Sbjct: 61 LEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLR 120 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 +++ E FG L I P VT+ + L+T F+LL L Sbjct: 121 RSKSLHFPTAKPE--------YKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQ 172 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 G+++ RD +++++ D DR++DV I +LR+ L + IKT+R GY + Sbjct: 173 GKVLSRDYIIEHVWAWDKDVYDRTIDVHIKKLRELLKEYGN---CIKTIRGVGYKW 225 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 112/231 (48%), Gaps = 5/231 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ ++D+ ++ L+ YL + V A I + DL +LDIMLP +G + Sbjct: 21 KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 80 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C+ +R K++ PI++LT+ + + I L +GA DY+ K P ++AR++ LR+ ++ Sbjct: 81 LCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKKY 140 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + ++ L + L ++ L +SL+ +F +L L + AG ++ Sbjct: 141 SPGIITEKIP----SELSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVS 196 Query: 183 RDALLKNLRGVSYDG-LDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + L + Y ++ V I LR+KL D + P IKT+ GY Sbjct: 197 IEELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYK 247 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 116/231 (50%), Gaps = 6/231 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N I+ V+D+ E+ +L+ L V G++A + + +E L++LD+M+P DG Sbjct: 3 NNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDGF 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C +R +++ PI++L++ D++ I + GA DY+ K L R+R R+ Sbjct: 63 EVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYF 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + + ++ ID +T+AN E+SL+ +FE+L+ LAT+ G++ Sbjct: 123 LNTKIQVSD------DIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVF 176 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + + + + Y + +V V +SRLR KL + I TV GY Sbjct: 177 SAEEIFEKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYK 227 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 107/234 (45%), Gaps = 6/234 (2%) Query: 1 MN--TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGK 58 MN ++ VED+ E+ I YL V G + E I + L ++DIM+P Sbjct: 1 MNFYNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKM 60 Query: 59 DGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 DG+T+ LR + P+++LT+ +M+ IL L +GA DY+ K P L+AR+ LR+ Sbjct: 61 DGITMVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRR 120 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 + E G L ++ + V L I ++ +F++L L + G Sbjct: 121 YSKYLSVVSGAE---QKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPG 177 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 ++ + + + + D +V V + +R+K+ + P +K V GY Sbjct: 178 RVFSAEEIYEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYK 230 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 81/237 (34%), Positives = 137/237 (57%), Gaps = 7/237 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VEDD E+ L+A YL ++++V+V + + + DL++LD+MLPG+DG+ Sbjct: 18 PHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGEDGL 77 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +ICR LRA+ + PI++LT+ +++ I+ LE+GA DY+ K P LLAR+R LR+ Sbjct: 78 SICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRR--- 134 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQI 180 G + L F +D R + +++L+ A+F+LL + G++ Sbjct: 135 ---GSGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRV 191 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + RD LL +G + +RS+DV +SR+R+K+ ++ P IKT+R+ GY+F P Sbjct: 192 LSRDQLLDLTQGRAPGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVFTPEV 248 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 132/233 (56%), Gaps = 7/233 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+DD ++ L+ +L + M+V++ G++ + + R DL++LD+MLPGK G+ Sbjct: 82 HVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKSGIE 141 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 IC+D+R PI++LT++ + IL LE+GA DY+ K P LLAR+R LR+ E Sbjct: 142 ICQDIRRHSRVPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRRLE-- 199 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQIM 181 + S + F T+D R +T ++ + L+TA+F LL + I+ Sbjct: 200 ----NNRAPSRPVTHSYRFAGWTLDCARRRLTSPSDVRVELTTAEFNLLEAFVKSSQHIL 255 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 RD L++ + G DRSVD+ ISRLR+KL D++ P I T+RN GY F Sbjct: 256 SRDQLMEMAGNQAVYGYDRSVDILISRLRRKLNDDSRSPKLILTIRNGGYQFG 308 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 128/233 (54%), Gaps = 8/233 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ ++DD E+ L++ +L+ V E G + ++ +L ++DIM+PGK+GM + Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 R+LR S P+++LT+ +M+ IL LE+GA DY+ K P L AR+R LR+++ Sbjct: 63 LRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSDTQQ 122 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + QET FG+L P +R +T + L+ ++ +L L HAG+++ + Sbjct: 123 ESDDKQET--------RFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEVVSK 174 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 L + G + DR++DV I LRKK+ RIKTVR+ G+LF P Sbjct: 175 YELSQAALGKRHGPFDRTLDVHIGHLRKKISAADNTEARIKTVRSVGWLFVPE 227 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 120/232 (51%), Gaps = 7/232 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ +D+ V I YL +M G +A E E PDLV+LD+M+P G Sbjct: 5 KKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFGT 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+++R + PI++LT+ +++ I+ LE+GA DYI+K P ++ R++ R+ Sbjct: 65 EVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVGN 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 A + L K + F ID + L +I ++ + ++L+ LAT+ G+++ Sbjct: 125 ANIDTNLNR------KLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVL 178 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ +L + G Y G R VD I R+RKK+ + E + IKTV GY F Sbjct: 179 SREEILDKVWGYDYFGDTRVVDTQIKRIRKKIPEEG-EKWSIKTVYGIGYKF 229 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 117/233 (50%), Gaps = 7/233 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I V+D+ ++ +I +YL V V G A + NPDL++LD+MLP G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 IC LR + PI++LT + + + L++GA DY+ K P L+AR++ LR+ E Sbjct: 70 DICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTED 129 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 K +L+ L I+ +N V A ++L+ ++ +L + + G+I Sbjct: 130 ELGEK-------NSLFSLNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIF 182 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ L+ G ++ G DR++D I LR K+ DN EP I T+R GY F Sbjct: 183 TREELIIVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKFG 235 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 302 bits (775), Expect = 6e-81, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 112/233 (48%), Gaps = 13/233 (5%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 M I+ V+DD + +I L + G QA E PDLVLLD+MLPG D Sbjct: 30 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSD 89 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G+ +CR +R + PIV+LT+ + + LE GA DY+ K PA L+AR+R LR Sbjct: 90 GIEVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR-- 147 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + L +TID +VT ISL+ +F+LL LA Q Sbjct: 148 ----------PGDQKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQ 197 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + R+ LL+ + G + R V+V + RLR K+ + P + TVR GY Sbjct: 198 VFTRELLLEQVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 84/243 (34%), Positives = 131/243 (53%), Gaps = 16/243 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILR--ENPDLVLLDIMLPGKD 59 T++ +EDD ++ LI+ YL + +V P + ET+ ++ DLV+LD+MLP D Sbjct: 9 KTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDMD 68 Query: 60 GMTICRDLRAKWS-----GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRL 114 GM +C+ +R I++LT+ + +L LEMGA DY+ K P LLAR+R Sbjct: 69 GMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIRA 128 Query: 115 HLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELA 174 +R+++ + L FG L + P + VT+ + + L+T F+LL A Sbjct: 129 VMRRHDLPLHQQKEDN--------LVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFA 180 Query: 175 THAGQIMDRDALLKNLRGVS-YDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 TH+G+++ R+ L + D +DR++DV ISRLR + DN +P RI TVR GY F Sbjct: 181 THSGKVLSREQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 240 Query: 234 APH 236 A Sbjct: 241 ATD 243 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 117/237 (49%), Gaps = 10/237 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 MN I+ ED+ + S I L + V G +A RE D+VLLD+M+P DG Sbjct: 1 MNRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDG 60 Query: 61 MTICRDLRA-KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 C +R + I++LT+ + + I L GA DYI K P L+AR++ LR+ Sbjct: 61 FEACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRV 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 E+ K L G ID + VT I L+ +++L+ L + Sbjct: 121 EKVKRKDS---------KRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEI 171 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 ++ RDALL + GV+Y G ++VDV I RLR+K+ D+ + P I+T+ GY + H Sbjct: 172 VLSRDALLDAVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKWRRH 228 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 302 bits (774), Expect = 8e-81, Method: Composition-based stats. Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 14/236 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 MN I+ +ED+ V ++ AYL + V G E +E DLV+LD+MLP DG Sbjct: 1 MNNILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ LR I +LT+ + + I L +GA +Y+ K P L AR+ R+ Sbjct: 61 EEVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRR-- 118 Query: 121 QATLTKGLQETSLTPYKALHFGT--LTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 + F L ID R+V L+ EI+L+ +F++L+ LA++ G Sbjct: 119 ----------VGCKKENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQG 168 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ R+A+++ G+ +DG DRS+DV I LRKK+ ++ P I TV GY F Sbjct: 169 KVFTREAIIERAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKFG 224 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 77/236 (32%), Positives = 121/236 (51%), Gaps = 8/236 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ +DDA + LI Y +V G +A E + + PD+V+LD+M+P DG Sbjct: 1 MVKLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + +R K S P+++LT+ D++ IL LEMGA DY+ K P LLAR++ LR+ Sbjct: 61 FETLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRR-- 118 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 QE P + + + +R V L + L+T+++ LL + GQ+ Sbjct: 119 ------ASQEREDDPTADIDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQV 172 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 + + L + G DRS+D+ IS LRKK+ + RIKTVR GY+F + Sbjct: 173 LTKQELSEKALGRKLTMYDRSLDMHISNLRKKIGNLENGDPRIKTVRGVGYIFVSN 228 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 302 bits (774), Expect = 9e-81, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 115/230 (50%), Gaps = 7/230 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+D+ + ++A+YL + G QA + R +PD+V+LD+ LP DG+ Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR +R I++LT+ S+ + I L +GA DYI K L+ R+ LR+ + Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRRPRTS 161 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T T L G L +DP+ V + T + L+ +FELL LA GQ++ Sbjct: 162 T-------TPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLT 214 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 R L+ + ++ G +R VDV I LR+KL + I TVR GY Sbjct: 215 RHDLVTEVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 81/236 (34%), Positives = 125/236 (52%), Gaps = 5/236 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ VED ++ ++ L+ QV G A + PDLV+LD MLP DG+ Sbjct: 6 PTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGL 65 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R +R S P+++LT+ + + ++ LE+GA DY+ K L+AR+R LR++++ Sbjct: 66 EVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQR 125 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + LQ + + L +G L +DP +V L E+ L+ +F +L L + G+ Sbjct: 126 --IQQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAF 183 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R+ LL + G SY G DRSVD A+ RLRKKL D I+TV GY A Sbjct: 184 SRNYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA---IETVWGLGYRLQAEA 236 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 301 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 125/235 (53%), Gaps = 6/235 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+DD E+ L+A +L + +VT +A L + LV+LD+MLPG+ G Sbjct: 27 MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESG 86 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + R LR + PI++LT+L + + I+ LE+GA DY+ K P L+AR+R LR+ Sbjct: 87 IDFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRR-- 144 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQ 179 + + + + F ++ R + E+ L+ +++LL L + Sbjct: 145 ---VGENETPGRESSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNR 201 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ RD LL LRG DR++DVAISRLR+KL D+ IKTVR GY+ A Sbjct: 202 VLTRDMLLDLLRGRQAGPFDRAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVLA 256 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 86/237 (36%), Positives = 133/237 (56%), Gaps = 5/237 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILREN-PDLVLLDIMLPGKDG 60 I V+DD E+ +L+ YL KH V G+ E DLV+LDIMLPG+DG Sbjct: 5 KCIYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQDG 64 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR LR + P+++LT+ +M+ I+ LE+GA DY+ K P LLAR++ LR+ E Sbjct: 65 FAVCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRRME 124 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + E + ++ F T+D ++R + + + SLS AD+ LL TH G + Sbjct: 125 HTEVV----EIAPVTHRFYRFAQFTLDTLSRELYFKDEKESLSGADYNLLMLFLTHPGAV 180 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + R+ + +N RG LDR +DV +SRLR++L ++A +P IKT+R +GY+ Sbjct: 181 LTRELIAENTRGRDSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYILTASV 237 >UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y0H8_9GAMM Length = 241 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 124/235 (52%), Gaps = 2/235 (0%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ VEDD E+G LI L ++ V + A + I + L+LLDI LP DG++ Sbjct: 5 KLLIVEDDREIGKLITTQLTSLNLHVDHVISAELALKKIAKHPYGLILLDINLPQMDGLS 64 Query: 63 ICRDLRAKWSGP-IVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR ++ + ++LLT+L SDM+ ++ LEMGA DYI K L AR++ LR Q Sbjct: 65 LCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLRHRAQ 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 ++ E S+ + L G+L I+ + V LA I+L+ +F+LL A H + Sbjct: 125 LLASQNTDEPSVASEQTLKVGSLNIEFDSHQVYLAEQAINLTATEFDLLVYFARHPNHVF 184 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R LL + G + G + +V+ I+RLR KL + + P I+TV GY P Sbjct: 185 SRQQLLDKVWGYQHSGYEHTVNSHINRLRAKLELHQSTP-IIETVWGVGYKLNPS 238 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 116/232 (50%), Gaps = 5/232 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VEDD + +I YL K V+ G A ET L+ DLVLLD+MLPG DG Sbjct: 4 KKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGY 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+ +R PI++LT+ + L +GA DY+ K LLAR+ LR+ EQ Sbjct: 64 QVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQ 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 +E + L + L D ++ L I++ + +LL L + Q+ Sbjct: 124 -----DHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVF 178 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ L++ + G ++G DR +D+ I RLRK+L + + IKTV GY F Sbjct: 179 KREELIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKF 230 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 301 bits (772), Expect = 1e-80, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 114/232 (49%), Gaps = 10/232 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDD ++ +A L + G+ A E REN DLV+LD+ LP +DG Sbjct: 1 MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++ ++++ + P+++LT+ +M+ I +G DY+ K PA L+ R++ LR+ Sbjct: 61 FSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYR 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + L +G + ++ R V + L++ ++ LL L + +I Sbjct: 121 KGRG----------EEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRI 170 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 ++ ++ L ++ V V + RLR+K+ ++ + P IKTV GY Sbjct: 171 FTKEQIMDRLWPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 121/235 (51%), Gaps = 2/235 (0%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ VEDD ++ + AYL + G + + +E+ DL+LLD+MLPGK G Sbjct: 5 RRVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPGKSGY 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ICR++R + PI+++T+ ++ I L +GA DYI K PA L+AR+ +LRQ ++ Sbjct: 65 DICREIREQVDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLRQYDR 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + + E + + L I + V EI +FELL LA + + Sbjct: 125 --MMRKIPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPNIVF 182 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R+ L + + G Y G +V V I+R+R+K+ D++ P ++TV GY F Sbjct: 183 SREQLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFNKD 237 >UniRef50_A9KX94 Two component transcriptional regulator, winged helix family n=7 Tax=Gammaproteobacteria RepID=A9KX94_SHEB9 Length = 235 Score = 300 bits (771), Expect = 2e-80, Method: Composition-based stats. Identities = 97/239 (40%), Positives = 149/239 (62%), Gaps = 5/239 (2%) Query: 1 MNT-IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 M T I+ VEDD + I YL QV + G A IL P LV+LDIMLP KD Sbjct: 1 MKTKILIVEDDLPLAESIQEYLNYEGYQVEIISNGVLAVSRILEWQPALVILDIMLPQKD 60 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G+++CR++R +++G I++ T+ +++ I+ LE+GA DY+LK P +LLA+++ LR++ Sbjct: 61 GLSVCREVRPQYNGYILMFTARGEEIDQIVGLEIGADDYLLKPVKPRMLLAKIKAFLRRD 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 A Q+ S + + FG L I+ R VTLA+ I L+ +++LL LA +AG Sbjct: 121 RLAESIAENQQVS----EYISFGQLAINTQKRSVTLADVAIKLTDGEYDLLITLAKNAGN 176 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 I+ R+ +++ ++G YDG++R VD I +LRKKL D+A P++IKT+R+KGYLF W Sbjct: 177 ILSRNDIVEQVKGYYYDGIERGVDNHICQLRKKLGDDARNPFKIKTIRSKGYLFVSSGW 235 >UniRef50_Q2S740 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2S740_HAHCH Length = 242 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 90/235 (38%), Positives = 140/235 (59%), Gaps = 1/235 (0%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+DD + LI +L ++ V V G+ A + R P L++LD+MLPG DG++ Sbjct: 4 RLLLVDDDKGLTRLIKQFLEQNGYPVKVIHDGESAVSWLERNQPQLIILDVMLPGMDGLS 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR++R + GPI++LTSLD D++ + LE+GA DY+ K VLLA +R LR+ E Sbjct: 64 VCREVRKHYKGPIIMLTSLDDDIDEVAGLEVGADDYLAKPVKSRVLLAHIRAQLRRVETY 123 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + + G L I+ R V A I +TA+F LL+ LA AG ++ Sbjct: 124 SANDS-DAPATQENGVIRIGELVINSNARTVVKAGVAIDFTTAEFNLLYYLARQAGSVIS 182 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 RD + + + + YDGLDRS+D+ +SR+RK+L D+ +P IKT+R +GYLF +A Sbjct: 183 RDLVYREIFNLEYDGLDRSIDLRVSRIRKRLGDDPKQPRLIKTIRGEGYLFVDNA 237 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 300 bits (770), Expect = 3e-80, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 110/234 (47%), Gaps = 9/234 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDM-QVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 + ++ ++D+ E+ LI L + + +V +ENPDLV+LDIMLP +G Sbjct: 38 SKVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEG 97 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 IC+ +R PI+ L++ + + I+ L +G DYI K P + R++ LR+ Sbjct: 98 YDICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVS 157 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 ++ + G ++ +T I L+ + L+ H ++ Sbjct: 158 YLQPSQ--------TGTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRV 209 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + ++ L + + G + G D +V V I RLR+K+ + ++P + TV+ GY F Sbjct: 210 ISKETLYQAVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFV 263 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 12/236 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ +EDDA + LI Y+ K G++ E E+PD ++LDIMLP +G Sbjct: 6 KVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGWE 65 Query: 63 ICRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+ +R PI++LT + I L +GA DYI+K P L+AR++ LR+ Sbjct: 66 VCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRT-- 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 S + L F + I V + N E+ ++ + EL + LA + Q++ Sbjct: 124 --------ILSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVL 175 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R LL + G ++G R+VDV I R+R KL ++ A+ + I T+R GY F ++ Sbjct: 176 TRQQLLDRVWGYEFNGDPRTVDVHIKRIRDKLAEHKAK-WSIVTIRGVGYRFEENS 230 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 87/235 (37%), Positives = 141/235 (60%), Gaps = 7/235 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+DD E+ L+A+YL K+ M+ ++ G Q + + + DL++LD+MLPG+DG+T Sbjct: 6 HILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLT 65 Query: 63 ICRDLRA--KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR+LRA + P+++LT+ + + + I+ LEMGA DY+ K L AR+R LR+ Sbjct: 66 LCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRAR 125 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDP-INRVVTLANTEISLSTADFELLWELATHAGQ 179 + E P + L FG +D ++ T ++LS A++ LL H + Sbjct: 126 MLPANLQVSE----PAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQR 181 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ RD LL +G D DRS+D+ ISRLR++L D+A EP IKT+R++GY+F+ Sbjct: 182 VLTRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFS 236 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 121/239 (50%), Gaps = 10/239 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N+I+ +DD ++ S++ +Y V + G +A + + ++PD+++LDIM+PG DG Sbjct: 4 NSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGF 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR R PI+ L++ D + + ++ L +GA DY++K L+AR++ LR+ Sbjct: 64 EVCRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRRRG 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 L++ + L ID V ISL+ +F LL LA+ ++ Sbjct: 124 EVLSQ---------VASYEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVF 174 Query: 182 DRDALLKNL-RGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 R LL+ G Y+G +R++D I LRKKL + ++P I TV GY F E Sbjct: 175 SRMQLLEKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQGANHE 233 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 131/237 (55%), Gaps = 5/237 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N I+ V+DD E+ L+ YL V+ G + + +E +L++LD+MLPG+DG+ Sbjct: 5 NHILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGL 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ++CR++RA+ PI++LT+ + ++ I+ LE+GA DY+ K P LLAR+++ LR+ Sbjct: 65 SLCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTRN 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQI 180 + + + + F +D R + +SL ++D+ +L L H + Sbjct: 125 DRNKAAVAD----EFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNRP 180 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + RD L++++ G +DRS+DV ISRLR + + P I+TVRN GY+ A Sbjct: 181 LSRDFLVEHVYGKESHAMDRSIDVCISRLRHHIEADTRNPTIIRTVRNAGYMLASQV 237 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 299 bits (768), Expect = 4e-80, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 122/234 (52%), Gaps = 8/234 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 + I+ VEDD +AAYL K +V+ GD + ++ DL+LLDI LPG DG+ Sbjct: 4 HHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGVDGL 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R++R + ++++T D +++ I+ALEMGA DY+ K LLAR + LR+ Sbjct: 64 QLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRTLS 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQI 180 A + F T+D R + +++ L+ +FELL A+ G++ Sbjct: 124 AREASEDENQK-------SFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRV 176 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 M RD LL + + DR+VDV + RLR+K+ + P I TV GY+FA Sbjct: 177 MTRDNLLDYVSHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVFA 230 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 63/235 (26%), Positives = 107/235 (45%), Gaps = 9/235 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQ-VTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +I+ V+D+ + +I L K + + ++A + DL++LD+M+ G G Sbjct: 5 SILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGF 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 C +R PI LT+ SD + + +GA DYI K P L AR+R HL++ Q Sbjct: 65 EACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQ 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + T Q + T P N + + ++ S +LL H ++ Sbjct: 125 SKETSSNQ--------TYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVL 176 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 +D + + + G G + +V V I +LR+K+ + + P I TVR GY F P+ Sbjct: 177 SKDQIYEKVWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPN 231 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 83/237 (35%), Positives = 125/237 (52%), Gaps = 7/237 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +TI V+DD E+ SL++ YL ++ + E R L+++DIMLPG +G+ Sbjct: 5 HTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPGMNGL 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R+LRA+ + P++ LT+L + I+ LE+GA DY+ K P LLAR+R LR+ E Sbjct: 65 ELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLRRTEG 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDP-INRVVTLANTEISLSTADFELLWELATHAGQI 180 + T L F +D +V +SLS ++ LL + ++ Sbjct: 125 GARRDQPETTP------LQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQRV 178 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + RD LL+ +G + DRS+DV ISRLR +L DN EP IKTVR GY+ A Sbjct: 179 LSRDELLERTQGRNAVPYDRSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVLATDV 235 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 134/237 (56%), Gaps = 5/237 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M TI+ +EDD ++G+LI L T++ G++ + +PD+V+LD+ LP DG Sbjct: 1 MKTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDG 60 Query: 61 MTICRDLRA-KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + +CR +R + PI ++T+ + +++ I+ LE+GA DYI K L R+ + R+ Sbjct: 61 IEVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 ++ K ++ + G L IDP+ R VTL + +++S +F++L +A G+ Sbjct: 121 DKKAGIKP----NVGASGEIIRGALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGK 176 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 + R+ +L+ + G+ +DG +R +D + R+R KL N+A+P I+T+ GY F + Sbjct: 177 VFSREMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 233 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 11/233 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQ-VTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 I+ V+D+ E+ +L+ A L K + + G + PDL+LLDIMLP DG Sbjct: 11 KKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLDG 70 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++C +R PI L++ + D++ IL L +G DYI K P + +++ R+N+ Sbjct: 71 YSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + FG +TID V A T ++L+ +F +L L + QI Sbjct: 131 YKEKNPNM----------YQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQI 180 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + L + + G +Y G D + V + LR+K+ DN ++P + TVR GY Sbjct: 181 FSKARLYEAVWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKL 233 >UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmicutes RepID=C9YME3_CLODR Length = 247 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 7/237 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 MN I+ ++DD E+ +LI + +++ G + + + + LV+LD+M+PG DG Sbjct: 18 MNKILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 77 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++R ++S PI++ TS + ++ + L GA DY+ K L+AR+ +R+ Sbjct: 78 FETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYT 137 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + G + L+F L ID NR T +N L +F+LL A H G+I Sbjct: 138 RFNQQAG-------AIQKLNFDGLQIDLENRSATTSNGTFELPPKEFDLLLYCAKHQGKI 190 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + + + + + G Y D ++ ISRLRKKL N + P I+TV+ GY F Sbjct: 191 LTKQQIYEEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 247 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 299 bits (767), Expect = 6e-80, Method: Composition-based stats. Identities = 76/266 (28%), Positives = 124/266 (46%), Gaps = 45/266 (16%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VED+A++ LI YL+K + + G A + PDL++LD+M+PG DG+ + Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 64 CRDLRAKWSG--P-IVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 C +R + P I++LT+ +M+ I+ L GA DYI+K P L+AR+R LR++ Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-------------------------- 154 + S P T+D R + Sbjct: 123 RG---------SHQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQ 173 Query: 155 -------LANTEISLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAIS 207 +A + L+ +F+LL ++ G++ +R L+ L G + G +R VD I+ Sbjct: 174 NAQNQLEIAQIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIA 233 Query: 208 RLRKKLLDNAAEPYRIKTVRNKGYLF 233 RLRKK+ + + P +KTV GY F Sbjct: 234 RLRKKIEPDPSAPTFVKTVVGVGYRF 259 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 299 bits (766), Expect = 6e-80, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 3/231 (1%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETIL-RENPDLVLLDIMLPGKDGM 61 I+ V+DD E+ L+ +L +V + E+ L +LDIM+PG DG+ Sbjct: 26 KILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGMDGL 85 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ++ + +R P+++L++ +D++ I+ L GA DY+ K P L AR++ +LR+ Sbjct: 86 SMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRF-- 143 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 G + + + + G L I+ R V + E L+ ++++L LA++ G++ Sbjct: 144 TEFNSGQKAGVDSGDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVF 203 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 D + + + +V V I RLR+K+ +A IKTV GY Sbjct: 204 STDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYK 254 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 109/232 (46%), Gaps = 14/232 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+D+ + LI YLA V G A + PDLVLLD+M+P DG Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 + +R + + P+++LT+ + + L MGA DYI K L AR++ LR++ Sbjct: 68 LQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQV 127 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + G+LTI P R A + L+ +F+LL LA H GQ+ R Sbjct: 128 EANVP----------IRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSR 177 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + LL + G + G R+VD I LR KL + A I TV GY FA Sbjct: 178 EKLLDRIWGPDFQGDARTVDAHIKNLRDKLGEGAG---LILTVWGVGYRFAE 226 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 298 bits (765), Expect = 9e-80, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 5/235 (2%) Query: 1 MNT-IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 M T I+ +D+AE+ ++ L +V G++ + + DL++LDIM+P + Sbjct: 1 MQTRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNMN 59 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G C LR + PI+ LT+ D + L GA DY+ K + L AR++ LR+ Sbjct: 60 GYQTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRY 119 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + K +ET L K L LT+ + + E+ L+ +F +L L + Q Sbjct: 120 QVYKGKK--EETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQ 177 Query: 180 IMDRDALLKNLRGVSYDGL-DRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 I + L + Y + ++ V I LRKK+ + A P IKT+ KGY F Sbjct: 178 IFSAEQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRF 232 >UniRef50_C5D1A0 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=C5D1A0_VARPS Length = 248 Score = 298 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 75/238 (31%), Positives = 123/238 (51%), Gaps = 5/238 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I ++D+ ++ L+A YL H +VT G + + DLVLLD+ LPG+DG + Sbjct: 6 HIAVLDDEIDITQLLANYLQSHGFRVTQLHNGPSLMALMDSDPADLVLLDLGLPGEDGFS 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ---- 118 I R +R W +V++T ++ ++ LE+GA DY+ K L+AR++ LR+ Sbjct: 66 IARRMRENWRCGLVIVTGRGDAVDKVVGLEVGADDYVTKPFDLRELVARVKAVLRRLAPD 125 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHA 177 + + + L L F +D R +T ++L+ +F+LL A H Sbjct: 126 DAPVAVPASSRPAGLASADRLRFAGWQLDLAARSLTNPQGQNVALTGGEFDLLCAFARHP 185 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 G+++ RD LL+ RG DR++DV + RLRKK+ + EP +K+VR GY+ P Sbjct: 186 GRVLSRDFLLEQTRGREASPFDRTIDVQVGRLRKKIEADPDEPQIVKSVRGAGYILVP 243 >UniRef50_D1U371 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U371_9DELT Length = 239 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 75/223 (33%), Positives = 120/223 (53%), Gaps = 1/223 (0%) Query: 12 EVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTICRDLRAKW 71 ++ +L+ YL + +V P GD A E + R+ P LV+LD+M+PG++G+ + RD+RA Sbjct: 15 KLCALLTEYLEGYGFKVRTLPSGDGAVEAVGRDTPSLVILDVMMPGRNGLDVLRDIRAGS 74 Query: 72 SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQATLTKGLQET 131 P+++LT+ D + I+ LE+GA DY+ K P LLAR++ LR+ E + G Sbjct: 75 KVPVIMLTAKGEDTDRIVGLELGADDYMPKPFNPRELLARIKAVLRRAETVGTSGGAPSA 134 Query: 132 SLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDRDALLKNLR 191 + + G L ++ V+ + E+ LS +F LL L + + RD L+ Sbjct: 135 AQRAV-LVEAGGLALNVSRHVLLVDEDELELSATEFRLLRALMENPDTALTRDELMSLAW 193 Query: 192 GVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 G + DRS+DV +S+LR L A RI+TV GY+F Sbjct: 194 GRDFSAYDRSIDVHVSKLRSLLRPYAGHDKRIRTVWGTGYMFV 236 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 120/236 (50%), Gaps = 8/236 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +TI+ +D+ ++ +++ YL + V G + + +P L++LD+MLP G Sbjct: 5 HTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPDIPGE 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C +RA+ + PI++LT+ D + + L++GA DY+ K P ++AR++ LR+ Sbjct: 65 EVCMAVRARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILRRT-- 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + L G L ID +++VV L+ +++LL L+ H ++ Sbjct: 123 ------MLDHPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVF 176 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R+ L++ + G+ + G R++D + LR K+ D+ P I+TV GY F Sbjct: 177 SREELIERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFGGDG 232 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 119/238 (50%), Gaps = 12/238 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 +++ +EDD + LI Y+ K V G+ E+ PD + LDIMLP DG Sbjct: 7 SVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLPKIDGWE 66 Query: 63 ICRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+++R PI++LT + I L++GA DY++K P L+AR++ +R+ + Sbjct: 67 LCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAVMRRADL 126 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + L +D + EI++ + +LL+ LA++ Q+ Sbjct: 127 LN----------DEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLASYPNQVF 176 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 R LL + G +++G R++DV I R+R+KL + A+ + IKT+R GY F E Sbjct: 177 TRQQLLDQIWGYAFEGDPRTIDVHIKRIREKLTEADAK-WTIKTIRGVGYKFLEKEHE 233 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 115/231 (49%), Gaps = 6/231 (2%) Query: 6 FVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTICR 65 VED+ + +A L V G E R PD+V+LD+MLPG DG+ +CR Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 66 DLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQATLT 125 ++A P+++LT+ D + + ++ L +GA DY+ K L+AR+ +R+ E+A Sbjct: 82 RVQAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARAL 141 Query: 126 KGLQETSLTPYK-ALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDRD 184 G S + + G L ID R V A TE+ L+ +F+LL LA ++ R+ Sbjct: 142 VGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTRE 201 Query: 185 ALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 LL+ + + R+VD + LR+KL + ++TV GY F P Sbjct: 202 KLLEEVWDWADASGTRTVDSHVKALRRKLGAD-----LVRTVHGVGYAFEP 247 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 298 bits (764), Expect = 1e-79, Method: Composition-based stats. Identities = 77/241 (31%), Positives = 115/241 (47%), Gaps = 16/241 (6%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 M ++ VED+ + +L+ L K V V G+ A PDLV++D MLP Sbjct: 1 MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60 Query: 60 GMTICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHL 116 G+ +CR LR + PI++LT+ + + + L+ GA DY++K L AR+R L Sbjct: 61 GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120 Query: 117 RQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATH 176 R+ + G +T+D + V A+ EI L +F LL L H Sbjct: 121 RRIRPGLA-----------EDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQH 169 Query: 177 AGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 G++ R+ LL + G R+VDV + RLRK L N E I+TVR+ GY F + Sbjct: 170 PGRVFSREQLLDAVWGSDVYVEARTVDVHVGRLRKALN-NKEERDPIRTVRSAGYAFDVN 228 Query: 237 A 237 A Sbjct: 229 A 229 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 78/231 (33%), Positives = 114/231 (49%), Gaps = 14/231 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VED+ ++ I L VTV G T NPDL+LLD MLPG G+ I Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 64 CRDLRAK-WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 C+ LR PI+LLT+ D + + L+ GA DYI+K LLAR+R +LR+N + Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNHEE 125 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 L F L+++ R V + I L+ +F+LL L +H Q++ Sbjct: 126 DP------------DLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLS 173 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD +L+ + G + G ++V + LR KL E I+TVR GY+ Sbjct: 174 RDQILERVWGYDFMGDSNIIEVYVRYLRLKLEAE-QEKRLIQTVRGVGYVL 223 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 61/235 (25%), Positives = 112/235 (47%), Gaps = 4/235 (1%) Query: 1 MN--TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGK 58 MN I+ VED+ E+ I YL V G + + I + L ++DIM+P Sbjct: 1 MNSYNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKM 60 Query: 59 DGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 DG+T+ LR ++ P+++L++ +++ I+ L +GA DY+ K P LLAR+ LR+ Sbjct: 61 DGITLTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRR 120 Query: 119 NEQATLTKGLQETSLTPYK-ALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + G +E + G L ++ + V + I + +F++L L +A Sbjct: 121 YTKYLNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRNA 180 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 G++ D + + + + D +V V + +R+K+ + P +K V GY Sbjct: 181 GRVFSADEIYERVWNENAINTD-TVMVHVRNIREKIEIDPKNPKYLKVVWGVGYK 234 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 297 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 84/244 (34%), Positives = 120/244 (49%), Gaps = 21/244 (8%) Query: 1 MNT-IVFVEDDAEVGSLIAAYLAKHD-MQVTVEPRGDQAEETILRENPDLVLLDIMLPGK 58 M IV +EDD ++ I L + VT+ G+ T+L P+L+LLDI LP Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 59 DGMTICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLH 115 +G ICR LR A PI++LT+ + + I L +GA DYI K L+AR+ Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 116 LRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELAT 175 LR+ E TP GTL ID + VV EI+L+ +F LL LA Sbjct: 121 LRRTEG------------TPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQ 168 Query: 176 HAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 G+++ R+ LL + G+ YDG R++DV I R+R+KL + I+T GY F Sbjct: 169 SKGRVLTREYLLDRVWGIDYDGETRTLDVHIRRVRQKLGIDG----YIETAVGIGYRFVE 224 Query: 236 HAWE 239 + Sbjct: 225 AGKQ 228 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 120/232 (51%), Gaps = 6/232 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ ++D+A++ L++ YL + G A DLV+ DIM+P DG Sbjct: 12 KTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDGY 71 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + + +R P + L++ DM+ I+ L++GA DY+ K P +++R++ R+ + Sbjct: 72 ELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMDV 131 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + ++ + G + +D ++ + + +++ +F++L L HAG++ Sbjct: 132 FSKGEKQN------HEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVF 185 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + ++ +++ G Y G + + V IS+LR+K+ DN +P + T+R GY F Sbjct: 186 TKASIYEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRF 237 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 13/233 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ +EDD ++ L+ L V G + + D++LLD+MLP GM Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C+ +R PI++LT+ D + ++ + GA DY+ K LLAR++ LR+ +++ Sbjct: 64 VCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKKS 123 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLA--NTEISLSTADFELLWELATHAGQI 180 + KG F LTI+ V I LS +FELL L + G + Sbjct: 124 VVHKG----------IFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIV 173 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + RD +L+ + G Y G D +D+ I LR K+ D E I+TVR G++F Sbjct: 174 LSRDKILEEVWGFDYIGNDNILDLYIKYLRDKI-DRPYERKFIQTVRGIGFIF 225 >UniRef50_A9ANV0 Two component transcriptional regulator, winged helix family n=72 Tax=Proteobacteria RepID=A9ANV0_BURM1 Length = 262 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 106/238 (44%), Positives = 148/238 (62%), Gaps = 7/238 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ VEDD + +LIA YL K+D +V GD A IL PDLV+LD+ LPGKDG Sbjct: 31 RILLVEDDVRLSTLIAGYLRKNDYEVDTVLHGDAAVPAILSTRPDLVILDVNLPGKDGFE 90 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 ICRD R + G I+++T+ D + +L LE+GA DY+ K P +LLAR++ LR+ Sbjct: 91 ICRDARQHYDGVIIMVTARDEPFDELLGLEIGADDYVHKPVEPRILLARIKAQLRRAPAR 150 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTL-ANTEISLSTADFELLWELATHAGQIM 181 Q + FG +ID +R V L + L++A+F+LLW L AG+++ Sbjct: 151 VAEGAPQP------ERYTFGKFSIDRTDRSVVLPDGSTPDLTSAEFDLLWVLVCRAGEVV 204 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 RD L+ LRGV +DGLDR++D IS+LR+KL D+A+ P RIKT+R+KGY F+ HAWE Sbjct: 205 SRDDLMLQLRGVEFDGLDRTIDGRISKLRRKLRDDASNPQRIKTIRSKGYQFSKHAWE 262 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 115/238 (48%), Gaps = 7/238 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ V+D+ ++ +I +YL K V G+Q E R NPDL++LD+MLP G Sbjct: 5 KKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMTGE 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 IC +R + PI++LT+ + + I L MGA DYI K P L+AR+ R+ Sbjct: 65 EICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRRL-- 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + L+ + + L ID + + + I L++ +++L L + + Sbjct: 123 -----NEEVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTF 177 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 R+ L+ G YDG DR+VD + +R+K+ N +P I TV GY F E Sbjct: 178 TREELISTALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRFGGEFNE 235 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 113/231 (48%), Gaps = 6/231 (2%) Query: 5 VFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTIC 64 + VEDD + ++ YL K + G++ + + DLVLLDIMLP +GM Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 65 RDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQATL 124 + +R K + P++++++ D D++ L L GA DYI K L AR++ +R+ Q + Sbjct: 61 KIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYSA 120 Query: 125 TKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDRD 184 + K + L ID N V + L++ +++LL A++ ++ ++ Sbjct: 121 EEP------AVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKE 174 Query: 185 ALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + +++ Y ++V + RLR+K+ D+ + P IKT+ GY Sbjct: 175 QIYRSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 225 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 13/236 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M TI+ ++DD + I L + + G E + PDLVL+D+ LPG G Sbjct: 12 MQTILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSG 71 Query: 61 MTICRDLRA-KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 IC+ LRA + + PI++L+++D +++ +L LE+GA DY++K L AR+R LR+ Sbjct: 72 TEICKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRR- 130 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 S K +HF + +D RVV ++ L+ A++ LL + + Sbjct: 131 -----------ASTDARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDR 179 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + RD +L ++ G + R+VD + +LR+KL + P TV GY F P Sbjct: 180 PLTRDMILNSVWGYEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRFIP 235 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 122/232 (52%), Gaps = 10/232 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ V+D+ ++ LI +L ++ QV G + + + PDLV+LD+MLPG GM Sbjct: 10 QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGM 69 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+ ++ K+S PI+++T+ + +L LE+GA DY+ K L+AR+R LR+ ++ Sbjct: 70 DLCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKE 129 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + + G + ++ + N E+ L+ ++++L T+ G Sbjct: 130 GEEEEQFEGN-------ITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAF 182 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD LL + G DR+VDV I RLR KL D E R++T+R GY F Sbjct: 183 TRDKLLDRVWGKDIYVTDRAVDVNIKRLRDKLGD---EKERLETIRGIGYRF 231 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 297 bits (761), Expect = 3e-79, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 116/236 (49%), Gaps = 13/236 (5%) Query: 1 MNT-IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 MN I+ VEDD + ++ L VT+ G A E L++LD+MLP Sbjct: 1 MNNPILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMS 60 Query: 60 GMTICRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 G+ +C+ LR++ PI++LT+ D + + L +GA DY+ K LLAR+ LR+ Sbjct: 61 GLEVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRR 120 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 Q+ P + + G L ID V ++ LS+ +F++L L AG Sbjct: 121 THQSK-----------PSQHVSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAG 169 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 Q +DR+ + + + G +R++D I+RLR KL DN EP I TV GY F Sbjct: 170 QTVDREKIYQEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFV 225 >UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax=Actinobacteria (class) RepID=CSEB_STRAW Length = 235 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 7/234 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++FVEDD + L + VT P G E PD+ LLD+M+PG DG+ Sbjct: 5 THVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRANRPDIALLDVMVPGLDGV 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ--N 119 ++CR +R + + P+++L++ ++ +L LE GA DY+ K AVL+AR+R LR+ + Sbjct: 65 SLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGH 124 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 ++ +++S L FG L ID V + ++L+ + LL E ++ G Sbjct: 125 ASGPNSRPAEDSSAPDGGVLTFGELEIDTEGMEVRRSGQPVALTPTEMRLLLEFSSAPGT 184 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ RD LL+ + + G R VDV + RLR K+ + RI TVR GY Sbjct: 185 VLSRDKLLERVWDYGWGGDTRVVDVHVQRLRTKIGQD-----RIDTVRGFGYKL 233 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 296 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 77/235 (32%), Positives = 119/235 (50%), Gaps = 14/235 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 T+ VED+ + ++ AYL K +V G + I NPD V+LD+MLP G Sbjct: 4 TVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEE 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 IC+ +R PI++L++ S+ + I + +GA DY+ K P ++ RL LR+ Sbjct: 64 ICKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTR-- 121 Query: 123 TLTKGLQETSLTPYKALHFG--TLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 +L + F + ID I + V L N ISL+ +F ++ +A H G++ Sbjct: 122 ---------TLNKMEIFSFNKKEIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRV 172 Query: 181 MDRDALLKNLRGVS-YDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R LL+ ++ S ++G +RS+DV I LRKKL N +P I TV GY F Sbjct: 173 FSRADLLQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKFG 227 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 296 bits (759), Expect = 4e-79, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 11/234 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ ++D+ + + + V+V G++A + D ++LD+MLP DG+T Sbjct: 18 KVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGIT 77 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C +R + I++LT+ D D++ IL LE+GA DY+ K L+AR+R +R+ E+ Sbjct: 78 LCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQEKG 137 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + K F L +D +R V I+L+ +F++L L + G++ Sbjct: 138 EVKK----------DEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFG 187 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R+ + + + G R++DV + LR+KL D + I+T GY F Sbjct: 188 REEIFQLVWGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 112/232 (48%), Gaps = 11/232 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 NTI+ V+DD + L+ +L V ++A + ++LDIM+PG++G Sbjct: 5 NTILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGF 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +RA+ PI+ L++ D++ I L +G DYI+KT PA ++AR++ LR++ Sbjct: 65 ELCRRIRAESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRSAT 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + L +G L ++ R V + + L+ +FELL A H + Sbjct: 125 RR---------PMEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVF 175 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 D LL G ++ V +SRLR+K+ + +P + V GY F Sbjct: 176 TYDQLLAKFW--DGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRF 225 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 111/234 (47%), Gaps = 6/234 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M TI+ VED+ + L+ +L K + G++A + DL ++D+M+P DG Sbjct: 1 MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + LR + P++ LT+ + + I L +G DY+ K L+AR++ LR+ Sbjct: 61 FDFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTY 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 Q + + L + ++ R V + ISL+ +F+LL L H GQ+ Sbjct: 121 QRNRN---IIGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQV 177 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ LL ++ G+ Y+G +R+VD I LR KL I+TV GY Sbjct: 178 FTREHLLTSVWGLDYEGTERTVDTHIKTLRMKLKPYGN---VIQTVWGIGYKLV 228 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 111/234 (47%), Gaps = 6/234 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ +DD ++ L+ YL +V G +A + DLVLLDIM+P DG + Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN---- 119 R +R + P++++++ D + I+ L++GA DY+ K P LAR+R LR+ Sbjct: 71 LRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGMP 130 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 A+ + L + L LT+D V+ + + L+ +F +L +H G+ Sbjct: 131 AGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHPGR 190 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + + + + G Y +V V IS+LR KL D+ I TVR GY Sbjct: 191 VFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA--YIATVRGLGYRM 242 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 76/229 (33%), Positives = 114/229 (49%), Gaps = 8/229 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I VED+ + + L + +E G +A E I++ N DLVLLD+MLPG DGMT Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 IC+ +R S PI++LT+ D + + L++GA DY+ K L+AR+R LR++ Sbjct: 66 ICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALRKHVPD 125 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 L+E L L + P V + + L+ ++ LL + + ++ Sbjct: 126 NGGVPLEE-------RLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLT 178 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 RD +L+ + G Y G VDV I LR KL D+ I TVR GY Sbjct: 179 RDQILEKVWGYDYSGDTNVVDVYIRYLRAKL-DDRFHEKYIYTVRGVGY 226 >UniRef50_C6CSH8 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSH8_PAESJ Length = 240 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 2/236 (0%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ +EDD + +++ YL++ V G++ + PD+VLLD+MLP DG Sbjct: 1 MYKVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLMLPDMDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 M +C +R + PI++L+ + AL+ GA DY+ K + AR+ +R+++ Sbjct: 61 MGVCASIRERSHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQ 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + S L + +D R++ + I + ++FE++ +H G++ Sbjct: 121 FSATEAEAASASEAEEADL--APIQLDSERRMLLVRGKLIETTFSEFEMMKLFLSHPGKV 178 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R+ L+ +RG DR++DV I LRKK+ N EP I+TV GY + Sbjct: 179 FSREELINTIRGFDSFVTDRAIDVHIVNLRKKIEQNPKEPRLIRTVWGFGYKYTTD 234 >UniRef50_C1SP47 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SP47_9BACT Length = 234 Score = 296 bits (759), Expect = 5e-79, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 119/236 (50%), Gaps = 7/236 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 + I+ V+DD ++ +++ YL + V V E+ + P +++LDIM+P +G Sbjct: 3 HNILIVDDDIKLCKMLSRYLRDYSYSVDVINNPLMLEKYLKSSKPSVIILDIMMPHINGF 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+ LR P+++L++ + I LE GA DY+ K P L+AR+ +++ E Sbjct: 63 DLCKKLRKNSDIPVIMLSARGEVEDRIAGLEAGADDYLAKPFEPRELIARIYAVIKRFEH 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + E + +G L+ID T+ + + L+ +F +L + + ++ Sbjct: 123 S-------EDTANNAAVYQYGELSIDTDKYKATMDGSNLELTKTEFIILSLMVRNPYILL 175 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 RD L L G D +R+VD+++SRLR KL D+ P IKTV +GY+F Sbjct: 176 SRDRLYNELTGFDCDAYNRTVDISVSRLRTKLNDDPKSPKYIKTVWGEGYMFIADK 231 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 10/233 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDM-QVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 I+ V+D+ ++ +LI L K ++ + P L +LD+MLP +G Sbjct: 4 PRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPDGEG 63 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ +RA+ + PI+ L++ +++ +L L +G DYI K P + R++ LR+ Sbjct: 64 YQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRR-- 121 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + G ++ V + + L+ + LL + +I Sbjct: 122 -------VSMMEAPVAETTTVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRI 174 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + ++ L + G S+ G D +V V I RLR+K+ N +EP IKTV+ GY Sbjct: 175 LSKETLFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRL 227 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 295 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 112/232 (48%), Gaps = 13/232 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 TI+ +EDD + + V GD + L P L++LD+MLP +G Sbjct: 6 TILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYE 65 Query: 63 ICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ICR LR + PI++LT+ + + +L L++GA DY+ K LLAR+ LR+ + Sbjct: 66 ICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQRK 125 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 T T FG D R + ++ LS +F+LL L T+AG+ + Sbjct: 126 QTGT------------VYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRAL 173 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD ++ + G RS+D ++ LR K+ + AEP +KTVR GY F Sbjct: 174 SRDRIMSTVWGYDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKF 225 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 9/233 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +I+ VEDD + + ++ L +V G L E+PDLV+LD+MLP +G Sbjct: 6 RSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGF 65 Query: 62 TICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + ++LR + P+V+L++ + + I+ L +GA DY++K LLAR++ LR+ Sbjct: 66 EVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRY 125 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + FG +++D R V A T + L+ +F+LL H G+ Sbjct: 126 PSAGAGSPPP--------VTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRT 177 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LL G Y+G R+VD + +LR K + P TVR GY F Sbjct: 178 FTREELLSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRF 230 >UniRef50_A4CEI9 Transcriptional regulatory protein RstA n=3 Tax=Gammaproteobacteria RepID=A4CEI9_9GAMM Length = 245 Score = 295 bits (757), Expect = 7e-79, Method: Composition-based stats. Identities = 98/236 (41%), Positives = 143/236 (60%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ VEDD + I YL QVTV+ RGD A + I +NPDLV+LD MLPG DG+ Sbjct: 10 HILLVEDDISLADWIKEYLEMKHYQVTVQERGDLAVQIIQEQNPDLVILDGMLPGLDGID 69 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 + + +R ++ I+++T+ D +++ +L LEMGA DY+ K VL ++R HL + Sbjct: 70 VLKAVRPAFANTIIMVTARDEELDEVLGLEMGADDYLTKPLRANVLSTKIRKHLERQTIM 129 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 ++ ++ + +G +ID R V L N + +S+ +F+LLW LA AG + Sbjct: 130 KRSQDIESEVGRSSDSFQYGDFSIDKQARSVELNNKIVDISSNEFDLLWLLAERAGNTVT 189 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 RD L++ LRG YDG DR+VD+ +S+LRKKL DN ++PYRIKTV KGYL AW Sbjct: 190 RDELIQALRGFDYDGFDRTVDLIVSKLRKKLNDNPSKPYRIKTVWGKGYLLVKSAW 245 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 122/238 (51%), Gaps = 16/238 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ +EDDA++ SL+ L K ++ + G A E + PDL+LLDIMLP DG Sbjct: 6 MKKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDG 65 Query: 61 MTICRDLRAKWS---GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 + IC+ +R P++ LT+ S+ + I+ LE+GA DY++K L+AR++L R Sbjct: 66 LDICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFR 125 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 TP + L G + +D + V L ++L+ +F LL L Sbjct: 126 -------------NQATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRP 172 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 G + R+ LL + G DR+VDV + RLR+K+ + A P I +VR GY F P Sbjct: 173 GVVFSREQLLNAVWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFEP 230 >UniRef50_C8SEM3 Two component transcriptional regulator, winged helix family n=3 Tax=Rhizobiales RepID=C8SEM3_9RHIZ Length = 259 Score = 295 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 78/239 (32%), Positives = 134/239 (56%), Gaps = 8/239 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 + ++ VEDD E+ ++ L ++ M V + G + +L + DL++LDIMLPG++G+ Sbjct: 27 SHVLIVEDDVEIARMLGETLTENGMIVEIAGNGARMNAALLNQKFDLIVLDIMLPGENGL 86 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +ICR LRA + P+++LT+L +++ I LE+GA DY+ K L AR+R LR+ Sbjct: 87 SICRRLRAHTNVPLLMLTALGEEIDRIFGLEIGADDYVTKPFSARELTARIRALLRRTAY 146 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQI 180 A + K L F +DP+ R + +N ++ +T +F+LL + G++ Sbjct: 147 APDERDRS-------KVLRFNGWRLDPVRRQLHDPSNARVATTTHEFDLLLAFCRNPGRV 199 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 + R+ LL ++RSVDV +SR+R+K+ +A +P ++TVR GY+F E Sbjct: 200 LSREELLSVTHAGLAGPIERSVDVHVSRIRQKIEKDARDPVLLRTVRLGGYIFTATVEE 258 >UniRef50_C6AWS7 Two component transcriptional regulator, winged helix family n=7 Tax=Rhizobiales RepID=C6AWS7_RHILS Length = 246 Score = 295 bits (756), Expect = 9e-79, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 132/233 (56%), Gaps = 8/233 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ VEDD + ++ + + + G + ++R+ DL++LD MLPG+DG + Sbjct: 14 HILIVEDDPAIADMLVDLVRSSGFEASSVESGAAMDRMMVRQQFDLIVLDAMLPGEDGFS 73 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 ICR LRA S PI++LT+L D++ IL LE+GA DY+ K LLAR++ LR+ A Sbjct: 74 ICRRLRAACSVPILMLTALQEDIDRILGLELGADDYVTKPFNSRELLARIKSILRRASYA 133 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQIM 181 QE +L P + F IDP +R + ++S++TA+F++L + +++ Sbjct: 134 H----HQEEALGP---MMFSGWRIDPKSRQLHDADGAQVSMTTAEFDILLAFCCNPNKVL 186 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ LL S ++RS+D ISR+R+K+ N +P IKTVR GYLFA Sbjct: 187 TREQLLSMTHAGSAGPVERSIDAHISRVRQKIEPNLKDPTFIKTVRLGGYLFA 239 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 295 bits (756), Expect = 1e-78, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 110/231 (47%), Gaps = 7/231 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+D+ + +L+ YL + +V G++A E + D++LLD+MLP DG Sbjct: 15 QVLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQ 74 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C+ +R K I++LT+ + + L +GA DY+ K P LLAR+ +R++ Sbjct: 75 VCKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAIT 134 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + AL F L I P R V + + + + +F+L LA + Sbjct: 135 QSIRRQE-------AALEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFS 187 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ L+ + G Y+G R VD I +R+K I+TV GY F Sbjct: 188 REELVNLIWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKF 238 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 124/238 (52%), Gaps = 7/238 (2%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 MN I+ +EDD E+ ++I ++L + + V G + E ++ DL++LDIMLP D Sbjct: 1 MNGKILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEID 60 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G T+C+++R + PI++L++ +++ + L++GA DYI K L AR+ ++++ Sbjct: 61 GFTVCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRY 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + K + S+ YK LTI V + + EI L++ +F LL LA + + Sbjct: 121 KGYN--KKTDDNSIWRYK----NGLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHK 174 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + + L +N+ + ++ V + LR+KL DN P I+TV GY F Sbjct: 175 VFTKKELYENVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKFIGEK 232 >UniRef50_C6MYB5 DNA-binding response regulator n=2 Tax=Legionella RepID=C6MYB5_9GAMM Length = 247 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 128/233 (54%), Gaps = 4/233 (1%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N I+ ++DD E+ LI YL K+D + T G ++ + N DL++LDIMLPG DG+ Sbjct: 11 NHILIIDDDQEIVQLINDYLIKNDFRTTWALNGLNIKQLLRDNNFDLIILDIMLPGIDGL 70 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+ +R + PI++L++ +S + + LE+GA DYI K LLAR++ LR+ + Sbjct: 71 DLCQMIRQTHTMPIIMLSAANSIADRVAGLELGADDYISKPFSARELLARVKAQLRRTQG 130 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVV-TLANTEISLSTADFELLWELATHAGQI 180 + + L+P + +HF +D + T I LS ++E+L H G+I Sbjct: 131 DLSKERKK---LSPLQKIHFDMWILDRNTHSLIDRDATAIPLSQREYEMLLIFLEHPGRI 187 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++RD L+ L D DR++DV I RLRKK+ + P + T+R GY F Sbjct: 188 LNRDQLMDLLYDKDCDSQDRTIDVLIGRLRKKIEQDPRNPQLLLTIRGGGYQF 240 >UniRef50_A6VT30 Two component transcriptional regulator, winged helix family n=26 Tax=Gammaproteobacteria RepID=A6VT30_MARMS Length = 245 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 99/238 (41%), Positives = 140/238 (58%), Gaps = 2/238 (0%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ +EDD ++ LI +YL + V G + E P L++LD+MLP DG+ Sbjct: 7 RTILLIEDDLKLAELITSYLGQQGFVVHHADDGQKGLELAEIIQPQLIILDLMLPNLDGL 66 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 T+CR L+ + G +++LT+ DM+ + ALEMGA D++ K P VLLAR+R LR++E+ Sbjct: 67 TVCRRLQTWYQGALLILTASGDDMDQVAALEMGADDFVNKPIHPRVLLARVRALLRRDEK 126 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 L S L F +L I+ R V LA I L+ +FELLW LA++ + + Sbjct: 127 R--ANPLSPASTINNDQLIFDSLKINIGRRQVELAGELIKLTETEFELLWLLASNPEKTV 184 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 RD + ++LRG+ YDGLDRS+D I LRKKL D+ P RI TVR KGYLF W+ Sbjct: 185 SRDEISQSLRGIEYDGLDRSIDNKIVSLRKKLGDSNGLPRRIITVRGKGYLFITDQWQ 242 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 75/230 (32%), Positives = 114/230 (49%), Gaps = 11/230 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ VED+ ++ ++ L VT++ G + + LVLLD+MLPG G+ Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 63 ICRDLRAK-WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R LR P++LLT+ DS + + L++GA DY+ K LLAR+R LRQN Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALRQNGT 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 T G L + L ++ R V + E+ L+ +F+LL + H Q++ Sbjct: 125 KTEDIGT---------FLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVL 175 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 R+ +L ++ G Y G VDV I +RKKL D E I T+R GY Sbjct: 176 TREQILSSVWGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGY 224 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 122/237 (51%), Gaps = 12/237 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILR---ENPDLVLLDIMLPG 57 M I+ V+D+ + +++ YL V+ G A + E DLVLLD+M+PG Sbjct: 1 MTRILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPG 60 Query: 58 KDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 DG+ + R LR ++L+T+ +++ ++ L +GA DY+ K P + AR++ LR Sbjct: 61 MDGLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLR 120 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + T + L F LT+DPI R +T+ + L+ +F+LL L Sbjct: 121 RRRDGTTGDDPR---------LRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAP 171 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 G++ R LL+ + G + G +R VDV I LR +L D+A +P+ I TVR GY F Sbjct: 172 GRVFSRAQLLEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKFI 228 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 79/239 (33%), Positives = 125/239 (52%), Gaps = 16/239 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ +EDD ++ LI YL + G R PD +LLD+MLPG DG+ Sbjct: 3 KKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGL 62 Query: 62 TICRDLRAK---WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 T+ R ++ + P+V++T+ + + ++ LEMGA DYI+K P ++AR++ LR+ Sbjct: 63 TVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRR 122 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 +ET + + G +TID T L+ +F+LL L AG Sbjct: 123 ----------RETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAG 172 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 +++DR+ LL + G Y+G DR+VDV I RLRKK+ ++AA ++TV+ GY F Sbjct: 173 RVLDRETLLNTVWGDDYEGTDRTVDVHIRRLRKKMGESAA---WVETVKQIGYRFREEG 228 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 294 bits (754), Expect = 2e-78, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 5/239 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ +ED+ + L++ L +V VE G ET LR++ DL+LLD+MLPG +G Sbjct: 3 QRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGF 62 Query: 62 TICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 I LR++ P+++LT+ +++ + L+ GA DYI K A LLAR+ LR++ Sbjct: 63 EIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRS- 121 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T + ++ + + G LTI P VTL I+L +FE+L LA G + Sbjct: 122 --TGKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVV 179 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 M RD L+ + G Y G R+VDV +S LRKKL + + I ++R GY + + Sbjct: 180 MTRDDLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDP-QSVHIDSIRGVGYKLVVNKKQ 237 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 6/235 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDM-QVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ V+D+ + ++ L K +V ++A + + ++ L+LLD+M+PG+ G Sbjct: 5 TILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPGQTGF 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + ++R + PI LT+ SD++ + GA DYI K P L+AR++ HL++ Sbjct: 65 DVSPEIRRHTNAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLKRTYI 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 +S Y+ F P + + +S S +LL H +++ Sbjct: 125 HKEVAAASVSSAYEYERFIF-----HPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVL 179 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 +D + + + GV G +V V I +LR+K+ + + P I T+R GY F P+ Sbjct: 180 SKDQIYEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFVPN 234 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 294 bits (753), Expect = 2e-78, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 116/233 (49%), Gaps = 15/233 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ VED+ + +I Y+ + G A + DL++LD+M+P DG Sbjct: 20 MANVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDG 79 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++C+ R + PI++LT+ + + + E GA DY+ K P VLLA+ LR++ Sbjct: 80 FSVCKLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRS- 138 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 S P AL+ G + + P + V + EI+L+ ++ELL+ L + GQI Sbjct: 139 -----------SPAPLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQI 187 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD LL + G ++G R+VD I LR+KL D E I T+ GY F Sbjct: 188 FARDQLLNRIWGYDFEGTTRTVDTHIKTLRQKLGD---EGKHIVTLIRSGYKF 237 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 123/232 (53%), Gaps = 13/232 (5%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+DD + L++ +L + Q G A + I D+V+LDIM+P DG Sbjct: 32 PNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 91 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C +LR + PI++LT+ + +G DY++K P L+ R++ L++ + Sbjct: 92 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQ- 150 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 +T +++ GT+ ++ VT+ ++L +FELL+ L + AG+ Sbjct: 151 -----------ITVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTC 199 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ L++++ G ++G +R++DV I+RLR+K + ++ + IKT+R GY Sbjct: 200 SREQLIEDVWGYDFEGNERTLDVHINRLREKFQEEKSK-FSIKTIRGLGYRL 250 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 9/233 (3%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 M I+ V+DDA + + + L +V G +A ET+ RE PDLV+LDIM+P Sbjct: 1 MKEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLS 60 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G + + +R + P++LLT+ ++ ++ LE+GA DYI K LLAR++ L Sbjct: 61 GFEVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL--- 117 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + + L G L +D VT + L+ +F++L L GQ Sbjct: 118 -----RRLGRREGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQ 172 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 R + + + S+ R +DV ISRLR K+ + + P I+TV + GY Sbjct: 173 AFTRAQISEAVSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 294 bits (753), Expect = 3e-78, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 116/238 (48%), Gaps = 8/238 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+D+ V ++ L + +V G+ A E NPDL++LD+++PG DG Sbjct: 1 MPNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDG 60 Query: 61 MTICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 +ICR L+ A PI++L++ +++ +L LEMGA DYI K P L+AR+ LR Sbjct: 61 YSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLR 120 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 ++++ + G L ID + L + L +FELL+ LA Sbjct: 121 RDKKEEFIIPRD-----SKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQP 175 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 G+ R LLK R+VDV I R+R+KL A I+T R GY F Sbjct: 176 GKYFSRYFLLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRFIE 233 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 117/234 (50%), Gaps = 8/234 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 + ++ +ED+ + L++ L + TV G +T L+ N DL++LDIMLPG +G Sbjct: 3 HKVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGF 62 Query: 62 TICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 I LR PI++LT+ +++ + L+ GA DYI K A LLAR+ LR+ + Sbjct: 63 EILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQ 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 Q T K + G L+I P V L + L +FE+L L G + Sbjct: 123 QDDSV-----PIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMV 177 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + RD L+ + G Y G R+VDV +S LRKKL + +I+++R GY Sbjct: 178 ITRDDLMNVVWGFDYIGGQRTVDVHVSSLRKKLEL--GQSVQIESIRGVGYKLV 229 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 293 bits (752), Expect = 3e-78, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 128/233 (54%), Gaps = 11/233 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I VED+ ++ L+ YL + D V RGD+ + PDL+LLD+MLPG DG+ Sbjct: 11 KNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGADGV 70 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 T+CR++R + PI+++T+ +++ +L LE+GA DY+ K P ++AR++ LR+ + Sbjct: 71 TLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLRRGGE 130 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 A+H G L + P +T+A ++ ++ ++F LL H G++ Sbjct: 131 EP-----------HEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVF 179 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 RD L+ ++G +Y+G DR++D I LRKKL+ I++V GY F Sbjct: 180 SRDELIAKIQGRTYEGYDRNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKFI 232 >UniRef50_A4B9L9 Transcriptional regulatory protein CpxR n=1 Tax=Reinekea blandensis MED297 RepID=A4B9L9_9GAMM Length = 233 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 7/233 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++I+ ++DD ++ L+ YL ++ G+ E I + DLVLLD+M+PG DG Sbjct: 4 HSILLIDDDKDLAELLGEYLDTEGYRLEAAHSGEDGIEQIKHHHYDLVLLDVMMPGIDGF 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + +R P+++LT+ + + IL LE+GA DY+ K LLAR++ LR+ E Sbjct: 64 ETLKRIRESSIVPVLMLTAKGEETDRILGLELGADDYLAKPYSHRELLARIKALLRRIEL 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 K L + ++ V I ++T++F++L L + AG+ + Sbjct: 124 DKNQK------EDDNGILACNGVELNFDTYRVYSDGEHIPMTTSEFKVLRVLMSRAGKAV 177 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ L + G DRS+D+ +S +R+KL E +I+T+R GY+F Sbjct: 178 PKEDLYLEVLGREIMAYDRSIDMHVSNVRRKLG-GTTEQSKIQTIRGIGYMFV 229 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 293 bits (751), Expect = 4e-78, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 128/234 (54%), Gaps = 4/234 (1%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M+ I+ VED+ ++ SL+A YLAK Q T+ G + T+ ++ DL+LLD+MLPGKDG Sbjct: 1 MSHILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +TICR+++ + I+++T+ +++ +L LE+GA DYI K P ++AR++ LR+ Sbjct: 61 LTICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRIN 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T + T+ ++ N T+ + L+ +F LL LA+ G+I Sbjct: 121 PPLTTGINTNIAKQSQTT----TVELNTDNYQATINQHPVELTAIEFNLLNILASAPGRI 176 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R L+ + + +R++D I +LRKKL ++ +++V + GY Sbjct: 177 YSRSQLIDRVYQDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKLV 230 >UniRef50_A0LCI2 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A0LCI2_MAGSM Length = 231 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 86/234 (36%), Positives = 131/234 (55%), Gaps = 9/234 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 MNTI+ V+DD ++ +++A YL + + G +A L+ + ++LD+MLPG +G Sbjct: 1 MNTILLVDDDKQLCAMLAEYLYEEGFSCDLCHSGTEALNRALQSPYEALVLDVMLPGING 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + R LR + P+++LT+ + + I+ LE+GA DY+ K P VL ARLR LR+ Sbjct: 61 FDLLRKLRQQTEVPVIMLTARGEETDSIVGLEIGADDYLSKPCNPRVLAARLRAVLRRTG 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T Q L+ G LT+ P+ R V L EI L++A+F +L +L AGQ+ Sbjct: 121 GERATSSEQ---------LNQGALTLYPMARKVMLGAVEIELTSAEFNILEQLLREAGQV 171 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 +D++ L + G + DRSVD+ IS LRKKL RI T+R GYL+A Sbjct: 172 VDKERLSQKGLGRKWMPYDRSVDMHISSLRKKLAATGDSSPRIHTLRGSGYLYA 225 >UniRef50_C9YCY7 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCY7_9BURK Length = 248 Score = 292 bits (750), Expect = 5e-78, Method: Composition-based stats. Identities = 88/239 (36%), Positives = 131/239 (54%), Gaps = 11/239 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILREN--PDLVLLDIMLPGKD 59 T++ V+DD + +L+ YL KH +V V G R LV+LD+MLP D Sbjct: 12 RTLLVVDDDQKTRNLLKTYLEKHQYEVRVAHDGASFNAEFERFKDELSLVILDVMLPDTD 71 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G T+CR +R++ PI++LT+ D + I+ LE+GA DYI K P LLAR++ R+ Sbjct: 72 GFTLCRSVRSQSPVPIIMLTASADDTDRIVGLELGADDYIAKPYNPRELLARIKAIHRRM 131 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAG 178 + P + L F ++D + RV+T + L++ DF LL A HAG Sbjct: 132 QLGAPG--------APVRFLKFAGFSMDMVERVLTDPQGQPVVLTSMDFNLLRFFAEHAG 183 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + +DR L++ RG LDRS+DV +SRLR++L D+ +P IKTVR GY+F+ Sbjct: 184 ETLDRARLMEQTRGRDLGPLDRSLDVQVSRLRQRLHDDGKQPVLIKTVRGSGYVFSADV 242 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 292 bits (750), Expect = 6e-78, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 15/232 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I V+DD + ++ AYL K T ++A PDL +LDIMLPG +G Sbjct: 4 YHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGMNGY 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 CR +RA PI+++++ D +++ IL LE+G+ DY+ K P L+AR+ L++ +Q Sbjct: 64 EFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQRWKQ 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + L +D R+V E+ +++ +F++L L+ H + Sbjct: 124 MK----------SHAEQTAISALVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAF 173 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD LL + G Y G DR VD I R+RKKL ++TV GY Sbjct: 174 SRDELLSLIWGFDYFGSDRVVDDLIRRIRKKLDKIP-----LETVWGFGYRL 220 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 292 bits (749), Expect = 6e-78, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 115/235 (48%), Gaps = 16/235 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 + IV +ED+ ++ +L+A +L V G + + + E PDLVLLD+MLPG G Sbjct: 3 HKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGT 62 Query: 62 TICRDLRAKWS---GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 +C+ ++ PI++LT+ +++ IL E+GA DY++K P L+ R++ LR+ Sbjct: 63 DVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRR 122 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 N L L D + + + L+ +F L E + G Sbjct: 123 N----------VNILPKVAHWQRDGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEG 172 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 +++ R+ LL N G ++G R+VD + RLRKKL A ++TVR GY Sbjct: 173 KVLSREQLLSNAWGYEFEGYSRTVDTHVRRLRKKLGPYAD---WLETVRGIGYRM 224 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 81/234 (34%), Positives = 125/234 (53%), Gaps = 13/234 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+ ++ L+ L + QV G++A E +L PDLV+LD+MLPG DG+ Sbjct: 5 KILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDGLE 64 Query: 63 ICRDLRAKWSG---PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + R +R PI++L++ + + I LE+GA DYI K P +L+AR+R LR+ Sbjct: 65 VARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLRRQ 124 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + + P + + +TI P V + +I L+ ++F++L LA+ G Sbjct: 125 Q-------AKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGL 177 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + R ++ +RG Y DRSVDV IS LRKKL D I+TVR GY F Sbjct: 178 VFTRWQIVDKIRGEHYAVTDRSVDVLISGLRKKLEDYG---EYIETVRGVGYRF 228 >UniRef50_B2J8Q5 Two component transcriptional regulator, winged helix family n=8 Tax=Cyanobacteria RepID=B2J8Q5_NOSP7 Length = 239 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 121/232 (52%), Gaps = 10/232 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+DD V +L+ +L++ Q+ G A + NP LV+LD LP +G Sbjct: 9 PKILIVDDDFGVRNLVHRFLSRK-YQIEAAADGKTALSMFEQFNPALVILDWNLPDVNGY 67 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ++C++++++ + +++LTS + + I L GA D++ K A + R+ LR+ Sbjct: 68 SLCQEMQSRTNVLVLILTSRTDEADKIKILSAGADDFMTKPFSLAEVEVRIEALLRR--- 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 ++ + +P + + F L I+P R V L + + L+ +F +L LA+H Q Sbjct: 125 ------IRYINPSPTQRIIFKQLVINPEGREVILNDKLLGLTALEFNILHFLASHPNQAW 178 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R L++ + G Y G R VDV I +LRKK+ + + P IKTVR GY F Sbjct: 179 SRPQLIQKIWGCDYVGDGRVVDVHIGQLRKKMEVDPSVPEFIKTVRGYGYKF 230 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 115/235 (48%), Gaps = 14/235 (5%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI +EDDA++ L+ L + + R+ P L +LDIM+PG DG+ Sbjct: 3 QTIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGDGL 62 Query: 62 TICRDLRAK---WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 +CR LR S PI+ +T+ + + +L LE+GA DYI K P LLAR++ LR+ Sbjct: 63 DVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLRR 122 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 E+ + + F + ID + + + + +F LL LA H G Sbjct: 123 FERPSTPS-----------LISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPG 171 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ RD LL + G + RSVDV + R+R+K+ + P +KTVR GY F Sbjct: 172 RVFSRDHLLDAVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRF 226 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 15/236 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VED+A + ++ L ++ Q D A + PDL+LLD MLPG G+ Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 Query: 62 TICRDLRAKW---SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 + L+ + P+V+LT+ + + + LE GA DYI K P L+AR++ +R+ Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 + + + + L++DP + V + + +F+LL TH Sbjct: 123 I-----------SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPE 171 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ R+ LL ++ G + DR+VDV I RLRK L ++TVR GY F+ Sbjct: 172 RVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFS 226 >UniRef50_B9XFI9 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XFI9_9BACT Length = 226 Score = 292 bits (749), Expect = 7e-78, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 107/236 (45%), Gaps = 15/236 (6%) Query: 1 MNT--IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGK 58 M+ ++ +EDD + + +V + G + L + PDLVLLDIMLP Sbjct: 1 MHKPSVLIIEDDPALLRGLKDNFEAQKYRVQIARDGQEGLGAALNQPPDLVLLDIMLPKM 60 Query: 59 DGMTICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 +G ICR +RAK PI++LT+ + + I LE+GA DY+ K Sbjct: 61 NGYEICRAIRAKRFDMPIIMLTAKGQEEDIIRGLELGADDYVTKPFSIRE---------- 110 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 A L+ FG +D + EI L+T +F LL AT Sbjct: 111 --LLARAAAFLRRRKGHAATVFEFGDCKLDLAAHKLYQGGKEIELTTKEFRLLEFFATRP 168 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 G+ + RD +L + G DRSVD ++ LR K+ N +P I+T+R+ GY F Sbjct: 169 GRALTRDQILDGVWGNDIVVNDRSVDRCVTTLRAKIETNPHQPVLIQTIRDVGYRF 224 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 292 bits (748), Expect = 8e-78, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 114/234 (48%), Gaps = 11/234 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ +ED+ + + + L +V G++ + ++ E PDLVLLD+M+P DG Sbjct: 1 MARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDG 60 Query: 61 MTICRDLRAKWS-GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 +C +LR + PI++LT+ + + L+ GA DY++K LLAR+R LR++ Sbjct: 61 FALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRH 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 ++ L FG + ID + + ++ + ++ +L L+ G+ Sbjct: 121 QREKRA----------VATLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGE 170 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + R+ L + G + R+VD I+ LR K+ + +P IKTV GY Sbjct: 171 PISRERFLDVVWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRL 224 >UniRef50_D1BL25 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BL25_VEIPT Length = 229 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 6/232 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ +EDD ++ ++ YL VT+ G E L DL++LD+MLP DG Sbjct: 4 HILIIEDDLDIANIERDYLMVAGYDVTIMTNGTDGIEAALNTPVDLIILDVMLPEMDGFE 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR +R K PIV++T+ D++ I L +GA DYI K P+VL+A+++ L Sbjct: 64 VCRQIRDKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAML------ 117 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 K L E A+ G + +DP V + E+ L +F+LL L + + Sbjct: 118 AQYKRLTERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFS 177 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ L + G+ G +V V I+RLR+++ DN ++ I TV GY F Sbjct: 178 KEELYSRVWGLDSYGDYATVAVHINRLREEIEDNPSDSKHIITVWGVGYKFV 229 >UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacillales RepID=C3ALG3_BACMY Length = 238 Score = 292 bits (748), Expect = 9e-78, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 5/234 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ V+D+ E+ ++ +L + G A I + DL ++DIM+P +G Sbjct: 3 RTILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNINGY 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + + +R ++ PI++L++ + +M+ I+ L +GA D+I K +LAR++ LR+ Sbjct: 63 ELIKIVRKEYKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYD 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 QE S T L +D + ++ EI LS +++LL G+I Sbjct: 123 FNTDLLNQEGSQTC-----IDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIF 177 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + + +N+ Y D ++ V ISRLR+K+ D+ P +KT+R GY FA Sbjct: 178 TKKQIFENVWSDHYYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRFAK 231 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 291 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 115/231 (49%), Gaps = 8/231 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+D+ + + + L M+VT G +A E + E PD+VLLD+M+P DG Sbjct: 9 VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 R +R+ P+++LT+ D + + + LE+GA DY+ K L++R+R LR++ Sbjct: 69 LRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHYT-- 126 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + + L+ID R V + ++L ++ LL+ L +AG ++ Sbjct: 127 ------QPPIPQTLVKVDDRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTH 180 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + LL + G Y + + I+ LR+K+ ++ + P I T R GY F Sbjct: 181 EMLLSKVWGPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRFV 231 >UniRef50_B8JG70 Two component transcriptional regulator, winged helix family n=2 Tax=Cystobacterineae RepID=B8JG70_ANAD2 Length = 238 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 127/232 (54%), Gaps = 9/232 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++FVEDD + +L YL H VT G L+ D+V+LD+MLP K G+ Sbjct: 10 RVLFVEDDERLAALTTRYLESHGHAVTWVADGQLGLAEALKGQHDVVILDLMLPRKSGLE 69 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR+LRA+ PI++LT+L + + +L LE GA DY+ K LLARLR +R+ + Sbjct: 70 VCRELRARLPVPIIMLTALGEEADRVLGLETGADDYLAKPFSSRELLARLRALVRRGRGS 129 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 P + + G L + P + + A + L+TA+F LL LA AG+++ Sbjct: 130 LGP---------PREVIRVGDLELSPRDWSASRAGRPLRLTTAEFVLLRVLAERAGRVLT 180 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ LL +G + + DRS+D ISRLR KL D+ P +KTVR GY+ A Sbjct: 181 REQLLDLTKGSADEAFDRSIDAHISRLRHKLGDDPRRPALLKTVRGAGYVLA 232 >UniRef50_A0L7S7 Two component transcriptional regulator, winged helix family n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7S7_MAGSM Length = 250 Score = 291 bits (746), Expect = 1e-77, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 131/233 (56%), Gaps = 5/233 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ +DD ++ L+ YL + D +V + G ++ + + D+V+LD++LP +DG+ Sbjct: 6 QILVCDDDPDILRLVGDYLEQRDFRVRLADSGGAMKQILEQTQIDVVVLDLILPDEDGLQ 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR+LRA+ + PI++L+S M+ I+ LEMGA DY+ K P LLAR++ LR+ Sbjct: 66 LCRELRARSNLPIIILSSKGEQMDRIIGLEMGADDYVSKPFHPRELLARIKSVLRRARSL 125 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQIM 181 T + HF T+D +R + + ++ L+ + LL H +++ Sbjct: 126 PETILDNPEQFS----YHFSGWTVDGPSRTLFAPSGNKVVLTGGEHALLRVFLHHPNRVL 181 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 RD +L G + R++D+ +SRLRK+L+DNA +P IKTVRN GY+F Sbjct: 182 SRDQILDLTYGKDQEPFGRTIDMQVSRLRKRLVDNAKDPSLIKTVRNAGYVFC 234 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 115/237 (48%), Gaps = 15/237 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILREN-PDLVLLDIMLPGKD 59 M+ ++ +ED+ + ++ YL + QV G + + ++LLDIMLP Sbjct: 2 MHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDIS 61 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G ++ + +R P++++T+ + + +L E+GA DY++K P ++AR++ L + Sbjct: 62 GWSLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRT 121 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + + + + +D +R VT+ +I L+ +F+LL L + G+ Sbjct: 122 YGSQDDGKTE-----------YQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGK 170 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 ++ R+ L + G + G R+VD I +LR+KL + + IKTV GY Sbjct: 171 VVSREKCLNEVWGYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKLEGD 224 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 119/236 (50%), Gaps = 16/236 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ VED+ E+ L+ YL +V++ G +A E+ L+ P+L++LD+M+P DG Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +TICR +R + PI+++T+ +++ +L L MGA DY+ K P L+AR++ LR+ + Sbjct: 61 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLD 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + ID + + ++L+ +F LL H GQ+ Sbjct: 121 RKAEPEQNDL-------------FRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQV 167 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKL---LDNAAEPYRIKTVRNKGYLF 233 R LL ++ S+D DR +D I LR+K+ D ++ V GY F Sbjct: 168 YSRAQLLDHINPDSFDVADRVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRF 223 >UniRef50_A3QF24 Two component transcriptional regulator, winged helix family n=4 Tax=Gammaproteobacteria RepID=A3QF24_SHELP Length = 246 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 90/240 (37%), Positives = 146/240 (60%), Gaps = 7/240 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DDA++ +L+A +L + + +E G +A E I+ E P LV+LD+MLP DG++I Sbjct: 7 ILIVDDDADLANLVADFLEMNGYKTEIEHNGAKAVERIIAEQPMLVILDVMLPDMDGLSI 66 Query: 64 CRDLR-------AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHL 116 CR +R ++GPI++LT+L++D++ + LE GA DY+ K VLLAR+R L Sbjct: 67 CRAVRHGHPGIEGSYNGPILMLTALNNDIDEVAGLETGADDYLAKPVRSRVLLARVRALL 126 Query: 117 RQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATH 176 R+ + +T+ L + + F L+ID + + +I L+TA+FELLW LA+ Sbjct: 127 RRKPEPPVTEKLSKLHSNNESLIEFDGLSIDKKYQRIQQHGQDIELTTAEFELLWLLASR 186 Query: 177 AGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 G+I DRD++ + Y+ R++D+ +SR+R+KL D+ + RIKT+ KGYLF Sbjct: 187 PGEICDRDSISDYFSDLGYESSHRTIDLRVSRIRRKLGDDPSHATRIKTIHGKGYLFVGD 246 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 119/236 (50%), Gaps = 15/236 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ V+D+ + ++ L + V QA I+ + PDL+LLD MLPG G+ Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63 Query: 62 TICRDLRA---KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 + R L+ PI++LT+ + N + LE+GA DYI K P L+ARL+ LR+ Sbjct: 64 ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 + S+ + + L +DPI+ VT+++ + + ++ LL TH Sbjct: 124 TD-----------SMGISEPIQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQE 172 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ R+ LL ++ G + +R+VDV I RLRK L I+TVR GY F+ Sbjct: 173 RVYTRNQLLDHVWGGNVYVEERTVDVHIRRLRKALSLEG-HDRFIQTVRGAGYRFS 227 >UniRef50_A9ASF4 Two component transcriptional regulator, winged helix family n=3 Tax=Burkholderia RepID=A9ASF4_BURM1 Length = 253 Score = 290 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 128/233 (54%), Gaps = 6/233 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ V+DD + L++ YL+ +D++VTV G + + DLV+LD+ +PG+DG+ Sbjct: 7 PHVLVVDDDPAIRELLSGYLSDNDIRVTVAACGQDMAQALESFAIDLVILDLRMPGEDGV 66 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 I R+LR + + PI +++ + + ++ALE+GA DY+ K LLAR+R LR+ Sbjct: 67 QIARELRTRSNLPIFIVSGKRDEADRVMALELGADDYLTKPFSNRELLARVRALLRRAGA 126 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQI 180 G + + +A F ++ R +T A T + L+ +F LL G++ Sbjct: 127 TAPATGRAKDA----RAYRFSGWELNVGTRRLTDPAGTPVELTNGEFCLLNAFLAAPGRV 182 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + RD LL++ R D DRS+DV I RLR+K+ + + P I+TVR GY+ Sbjct: 183 LSRDQLLESSRLYD-DVYDRSIDVQILRLRRKIEPDPSHPVFIRTVRGAGYVL 234 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 290 bits (744), Expect = 2e-77, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 10/243 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILREN--PDLVLLDIMLPGKDG 60 I+ VED+ V ++ + K G++A E + D++ LD+ LPG DG Sbjct: 2 KILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMDG 61 Query: 61 MTICRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 M + + +R + PI++LT+ DS+ + +L LE+GA DY+ K P L+AR++ R+ Sbjct: 62 MQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRRA 121 Query: 120 EQATLTKGLQETSLTPYK----ALHFGTLTIDPINRVVTLANTEI-SLSTADFELLWELA 174 E G ++ + + + R L + I L+ +F+LL LA Sbjct: 122 ELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTLA 181 Query: 175 THAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + Q+ R+ LL+ + Y G +R+VD I +LR+K+ + P I+TV GY F Sbjct: 182 KNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEEVG--PQVIQTVWGVGYKFD 239 Query: 235 PHA 237 A Sbjct: 240 DSA 242 >UniRef50_UPI0001C164FC Two component Transcriptional regulator, Winged helix family n=2 Tax=Nostocaceae RepID=UPI0001C164FC Length = 259 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 118/232 (50%), Gaps = 10/232 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+DD V +L+ +L++ + G A + NP LV+LD LP +G Sbjct: 30 PKIMVVDDDFSVRNLVHRFLSRK-YKTETAADGKSAMTLFEQFNPSLVILDWNLPDINGY 88 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+D++ + + +++LTS + + + I L GA D++ K + R+ LR+ Sbjct: 89 KLCQDMQNRTNVLVLMLTSRNDETDKIKVLTGGADDFMTKPFSLVEVEVRVNALLRRIRY 148 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 T+ + L F L I+P R VTL + ++L+ +F +L LA H GQ Sbjct: 149 IQPTQS---------QRLIFKQLAINPEGREVTLNDKPLALTALEFNILHFLACHPGQAW 199 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R L++ + G Y G R VDV I +LRKK+ +++ P IKTVR GY F Sbjct: 200 SRPQLIQKIWGCDYVGDGRVVDVHIGQLRKKMEVDSSTPEFIKTVRGYGYKF 251 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 15/235 (6%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ ++DD ++ +++ L +V V G + P+L++LDIMLPG DG Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 IC+ R PI++L++ D + + L +GA DY+ K LLAR++ LR+ Sbjct: 64 ICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRR--- 120 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 +T K + F L +D R V A ++L++ +F+LL H Q++ Sbjct: 121 ----------ITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLT 170 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R+ ++ + G+ + G ++V I+ LR+K+ D + I TVR GY+ Sbjct: 171 REQIIDRVWGLDFTGGSNVLEVYINMLRQKIEDYGS--RIIHTVRGVGYVLKEQG 223 >UniRef50_C7I0W4 Two component transcriptional regulator, winged helix family n=4 Tax=Proteobacteria RepID=C7I0W4_THIIN Length = 365 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 129/237 (54%), Gaps = 1/237 (0%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+DD + +++ YL + V + GD + ++ P V+LD+MLPG+DG+ Sbjct: 128 QRILVVDDDPGLRAMLRDYLTGNGFAVDLAAHGDAMRACLAQQMPHAVILDLMLPGEDGL 187 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R+LR PI++L++ +++ ++ LE+GA DY+ K P LLA L + Q Sbjct: 188 ALARELRRSSDLPILMLSARGEEIDRVIGLEVGADDYLPKPFSPRELLA-RLRALLRRAQ 246 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 T L S +A+ FG +D + ++ LS A+F LL + H +++ Sbjct: 247 PTSAGDLPPASKPAEQAVRFGPFLLDAAAFRLLRDGQDVGLSVAEFTLLQAMVAHPNRVL 306 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 RD L+ L+G D DRS+DV ++RLR+K+ D+ A P ++T+R +GYLF P Sbjct: 307 SRDQLIDWLKGYERDAFDRSIDVRVARLRRKIEDDPARPVYVRTIRGQGYLFNPSGA 363 >UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G298_SORC5 Length = 241 Score = 290 bits (744), Expect = 3e-77, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 11/235 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 T++ VEDD + + L +V V G++ DL+++D+MLP +G Sbjct: 17 RTVLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGF 76 Query: 62 TICRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + R LR + + P+++L++ ++M+ ++ LE+GA DYI K A LLAR++ LR+ Sbjct: 77 ELLRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRR-- 134 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + L G + I+ R V + I L+ +F++L LA G++ Sbjct: 135 --------DAIARADGAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRV 186 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + R+ + + G ++ G R++D I +LR KL +NA P + TVR GY F P Sbjct: 187 LSREQIQAKVWGPTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRFVP 241 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 113/232 (48%), Gaps = 11/232 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ ++DD + ++I L +VTV G + +L + PDL++LDIM+P DG+ Sbjct: 3 TKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGL 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+ LR PI+++T +DS + + LE GA DY++K L+AR++ LR+ + Sbjct: 63 EVCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + L F L +D R + I ST +F LL H Q++ Sbjct: 123 KK----------KEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVL 172 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ L+ + G + G ++V + LR KL EP I TVR GY+ Sbjct: 173 TRELLMDRVWGFDFRGESNVLEVYVGYLRSKLEAQ-NEPRLIHTVRGAGYVL 223 >UniRef50_Q1LHM7 Two component transcriptional regulator, winged helix family n=25 Tax=Proteobacteria RepID=Q1LHM7_RALME Length = 261 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 129/232 (55%), Gaps = 5/232 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+DD ++ +++A YLA M+ G + ++ DLV+LD+ LPG++G+T Sbjct: 28 RLLIVDDDPQIRAMLAEYLATFGMEAEGAEGGTAMRAAMSKQEYDLVILDLSLPGENGLT 87 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR++R + P+++LT+ + ++ LE+GA DY+ K L+AR+ LR++ Sbjct: 88 LCREIRESSNLPVIMLTARAELADRVVGLEVGADDYVTKPFEMRELVARIHTVLRRSR-- 145 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPI-NRVVTLANTEISLSTADFELLWELATHAGQIM 181 + P + F ++ ++V +T + LS A+F LL H +++ Sbjct: 146 --ADVRRPAPAAPGHEVRFAAWRLNTTLRQLVDAEDTVVPLSNAEFRLLLTFIEHPNRVL 203 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 DR+ L+ RG D DRS+D+ +SRLR+KL D+ + I+TVR +GY+F Sbjct: 204 DREMLINTARGRDLDVFDRSIDLLVSRLRQKLRDDPRDSALIRTVRGEGYVF 255 >UniRef50_A9KP45 Two component transcriptional regulator, winged helix family n=15 Tax=Bacteria RepID=A9KP45_CLOPH Length = 224 Score = 290 bits (743), Expect = 3e-77, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 119/232 (51%), Gaps = 16/232 (6%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETI-LRENPDLVLLDIMLPGKDGM 61 ++ V+D++ + L+ +L++ + V G+QA + +++ L++LD+M+P DG Sbjct: 5 KVLVVDDESRMRKLVKDFLSRSNYDVLEAENGEQAVDIFFEQKDISLIILDVMMPKMDGW 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+++R PI++LT+ + + +L E+G +YI K P +L+AR+ +R++ Q Sbjct: 65 QVCKEIRKYSKVPIIMLTAKSDEKDELLGFELGVDEYISKPFSPKILVARVEAIVRRSIQ 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 T + + G + ID V + + I LS +FELL T+ G + Sbjct: 125 ------------TLDETMEIGGIVIDKAAHEVKIDDLAIELSVKEFELLTYFITNRGVAL 172 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ +L N+ Y G R++D + +LR K+ D IKT+ GY F Sbjct: 173 SREKILNNVWNYDYFGDARTIDTHVKKLRSKMGDKGD---YIKTIWGMGYKF 221 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 10/235 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+D+ + +LI +L+K + G +A + + + L++LD+M+P DG Sbjct: 3 TKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGW 62 Query: 62 TICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C ++R + + PI++LT+ + + L++GA DY+ K P L+AR+ LR+ Sbjct: 63 EVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAV 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T+ Q LHF L +D + V + + + L+ +FELL L + Q+ Sbjct: 123 VNQTTQTKQ---------LHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQV 173 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 +RD LL + GV + G +R+VD I +R KL I+TV GY Sbjct: 174 FNRDQLLLKIWGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLKE 228 >UniRef50_Q4ZUU7 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=18 Tax=Proteobacteria RepID=Q4ZUU7_PSEU2 Length = 259 Score = 290 bits (743), Expect = 4e-77, Method: Composition-based stats. Identities = 77/230 (33%), Positives = 124/230 (53%), Gaps = 10/230 (4%) Query: 5 VFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTIC 64 + V+DD + L+ YL + ++ G Q + + E D+V+LD+MLPG+DG+++C Sbjct: 33 LIVDDDVAIRELLCDYLTRFNINARGVTDGTQMRQALTDETFDVVVLDLMLPGEDGLSLC 92 Query: 65 RDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQATL 124 R LR+ PI++LT+ + I+ LE+GA DY+ K P L+AR++ LR+ Sbjct: 93 RWLRSTSDIPILMLTARCEPTDRIIGLELGADDYMAKPFEPRELVARIQTILRRVRDERS 152 Query: 125 TKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQIMDR 183 + + F ++ + R +T + LS A+F LL +++ R Sbjct: 153 DQRT---------TIRFDAWRLNSVLRQLTAADGLVVPLSNAEFRLLRVFLERPHRVLSR 203 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + LL RG S + DRS+D+ +SRLR+KL D+ P IKTVR +GYLF Sbjct: 204 EQLLDAARGRSIEAFDRSIDLLVSRLRQKLGDDPKNPQLIKTVRGEGYLF 253 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 114/231 (49%), Gaps = 10/231 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+ ++ S + Y V G +A E ++ D++LLDIM+P DG Sbjct: 4 KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKD-IDIILLDIMMPNIDGFQ 62 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C+ +R K S PI+ L++ S+++ I L +G DYI+K L AR++ HLR+ ++ Sbjct: 63 VCQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR- 121 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 L + FG LT+D +R V EI + +F+++ LA H Q+ Sbjct: 122 --------IPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFS 173 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ + + + G +G +V I ++R K + A I TV GY + Sbjct: 174 KEQIYEKVWGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRW 224 >UniRef50_A9AVR8 Two component transcriptional regulator, winged helix family n=6 Tax=Chloroflexi (class) RepID=A9AVR8_HERA2 Length = 248 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 8/233 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ +DD + L+ L+ Q+ G +A + L+L+D+M+P DG Sbjct: 19 RKILVADDDPAILRLVEVALSGQRYQLVTVSNGLEALKMYRDGEYQLLLIDVMMPYIDGF 78 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 T+ +RA+ PI+++T+ D + + E+GA DYI K A L AR+ +R+ E Sbjct: 79 TVTERIRARSDVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRRVEG 138 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 K + G L ID V LA +++L+ +FELL+ LA ++GQ+ Sbjct: 139 YQHRKASP--------IVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQVF 190 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 DR+ L + + G Y G VDV + RLR+K+ + ++P RI TVR GY A Sbjct: 191 DREVLFREVWGYEYVGQTNLVDVCVRRLREKIEEQPSKPRRILTVRGVGYKLA 243 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7GKH0 Two component transcriptional regulator, winged ... 356 3e-97 UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6V... 354 2e-96 UniRef50_D2BG66 DNA-binding response regulator, two-component sy... 354 2e-96 UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostri... 350 2e-95 UniRef50_A1HRL8 Two component transcriptional regulator, winged ... 349 5e-95 UniRef50_A9VV65 Two component transcriptional regulator, winged ... 349 5e-95 UniRef50_A8F5W8 Two component transcriptional regulator, winged ... 347 2e-94 UniRef50_C7N0N0 Response regulator with CheY-like receiver domai... 347 2e-94 UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostri... 346 3e-94 UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional r... 346 3e-94 UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B... 346 3e-94 UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria ... 346 6e-94 UniRef50_B1YK44 Two component transcriptional regulator, winged ... 345 1e-93 UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C... 344 2e-93 UniRef50_Q21EC1 Two component transcriptional regulator, winged ... 344 2e-93 UniRef50_A9KR75 Two component transcriptional regulator, winged ... 344 2e-93 UniRef50_C8VW64 Two component transcriptional regulator, winged ... 343 3e-93 UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Ta... 342 7e-93 UniRef50_B2A0K7 Two component transcriptional regulator, winged ... 342 8e-93 UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate reg... 341 1e-92 UniRef50_P35163 Transcriptional regulatory protein resD n=162 Ta... 341 2e-92 UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacter... 340 3e-92 UniRef50_Q1AZ24 Two component transcriptional regulator, winged ... 339 4e-92 UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Ta... 337 1e-91 UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus... 337 2e-91 UniRef50_P94413 Uncharacterized transcriptional regulatory prote... 337 2e-91 UniRef50_B8FYB6 Two component transcriptional regulator, winged ... 337 2e-91 UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 336 4e-91 UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional r... 335 6e-91 UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=... 335 8e-91 UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiob... 335 1e-90 UniRef50_A5UYZ0 Two component transcriptional regulator, winged ... 334 1e-90 UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicu... 334 1e-90 UniRef50_B8G223 Two component transcriptional regulator, winged ... 334 2e-90 UniRef50_B8FSL6 Two component transcriptional regulator, winged ... 334 2e-90 UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=... 334 2e-90 UniRef50_C6CSM8 Two component transcriptional regulator, winged ... 334 2e-90 UniRef50_C6D6P8 Two component transcriptional regulator, winged ... 334 2e-90 UniRef50_B8G179 Two component transcriptional regulator, winged ... 334 2e-90 UniRef50_C4L340 Two component transcriptional regulator, winged ... 333 2e-90 UniRef50_P39663 Alkaline phosphatase synthesis transcriptional r... 333 3e-90 UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bact... 333 4e-90 UniRef50_Q2JED0 Two component transcriptional regulator, winged ... 332 5e-90 UniRef50_B2A1Z8 Two component transcriptional regulator, winged ... 332 6e-90 UniRef50_C5D2L7 Two component transcriptional regulator, winged ... 331 9e-90 UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacter... 331 1e-89 UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Fi... 331 1e-89 UniRef50_C6CZ95 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_B3QW38 Two component transcriptional regulator, winged ... 331 1e-89 UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 331 1e-89 UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicut... 330 2e-89 UniRef50_B8I272 Two component transcriptional regulator, winged ... 330 3e-89 UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID... 330 3e-89 UniRef50_Q2BDN1 Two component transcriptional regulator, winged ... 329 5e-89 UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Acti... 329 5e-89 UniRef50_A5UPS1 Two component transcriptional regulator, winged ... 329 6e-89 UniRef50_A6LXL2 Two component transcriptional regulator, winged ... 329 6e-89 UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Ta... 328 8e-89 UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Ta... 328 9e-89 UniRef50_B8I014 Two component transcriptional regulator, winged ... 328 1e-88 UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec... 328 1e-88 UniRef50_C0QG14 Response regulator, CheY-like receiver domain pr... 327 1e-88 UniRef50_Q38YC7 Two-component system, response regulator (Possib... 327 1e-88 UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicu... 327 2e-88 UniRef50_D1C683 Two component transcriptional regulator, winged ... 327 2e-88 UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii... 327 2e-88 UniRef50_B8CXQ9 Two component transcriptional regulator, winged ... 326 3e-88 UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mits... 325 5e-88 UniRef50_C6C1C7 Two component transcriptional regulator, winged ... 325 6e-88 UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillace... 325 6e-88 UniRef50_C6PCZ0 Two component transcriptional regulator, winged ... 325 6e-88 UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacter... 325 6e-88 UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heli... 325 7e-88 UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria Re... 325 8e-88 UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Ta... 325 8e-88 UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clos... 325 8e-88 UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Synt... 324 1e-87 UniRef50_B8G7R1 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_Q2SL72 Response regulator consisting of a CheY-like rec... 324 1e-87 UniRef50_A6TT79 Two component transcriptional regulator, winged ... 324 1e-87 UniRef50_D1C280 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_D2SFJ3 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_B8FI17 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_A6LVA4 Two component transcriptional regulator, winged ... 324 2e-87 UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clost... 323 3e-87 UniRef50_C7ILM1 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_B8DS40 Two component transcriptional regulator, winged ... 323 3e-87 UniRef50_A9AYM0 Two component transcriptional regulator, winged ... 322 5e-87 UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepI... 322 5e-87 UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacte... 322 6e-87 UniRef50_A5WHF9 Two component transcriptional regulator, winged ... 322 7e-87 UniRef50_C0GHG5 Two component transcriptional regulator, winged ... 322 8e-87 UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicu... 322 8e-87 UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria... 322 8e-87 UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Baci... 322 9e-87 UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteri... 321 9e-87 UniRef50_A0LVZ4 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacill... 321 1e-86 UniRef50_A9KHT5 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_B2A8D5 Two component transcriptional regulator, winged ... 321 1e-86 UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 320 2e-86 UniRef50_B1YFK7 Two component transcriptional regulator, winged ... 320 2e-86 UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteri... 320 3e-86 UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteri... 320 3e-86 UniRef50_A0KCT7 Two component transcriptional regulator, winged ... 320 3e-86 UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillu... 320 3e-86 UniRef50_A5WBW4 Two component transcriptional regulator, winged ... 319 5e-86 UniRef50_D2LZ20 Two component transcriptional regulator, winged ... 319 5e-86 UniRef50_P42244 Uncharacterized transcriptional regulatory prote... 319 5e-86 UniRef50_A9AWM9 Two component transcriptional regulator, winged ... 319 5e-86 UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotro... 319 7e-86 UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicu... 319 7e-86 UniRef50_A4AL32 Putative two-component system response regulator... 318 8e-86 UniRef50_A4J267 Two component transcriptional regulator, winged ... 318 9e-86 UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID... 318 9e-86 UniRef50_C4L0X3 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacter... 318 1e-85 UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinoba... 318 1e-85 UniRef50_Q1IMA9 Two component transcriptional regulator, winged ... 318 1e-85 UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slac... 317 2e-85 UniRef50_B4WRK5 Response regulator receiver domain protein n=1 T... 317 2e-85 UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicu... 317 2e-85 UniRef50_A5WB94 Two component transcriptional regulator, winged ... 317 2e-85 UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63... 317 2e-85 UniRef50_C4L703 Two component transcriptional regulator, winged ... 317 3e-85 UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacter... 317 3e-85 UniRef50_C4LLE8 Two-component system, response regulator n=19 Ta... 317 3e-85 UniRef50_B1ZQC8 Two component transcriptional regulator, winged ... 316 3e-85 UniRef50_C5D3X1 Two component transcriptional regulator, winged ... 316 3e-85 UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=... 316 3e-85 UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydo... 316 3e-85 UniRef50_A8ZYB8 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=... 316 4e-85 UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicu... 316 4e-85 UniRef50_A6LXP4 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_Q1J2L1 Two component transcriptional regulator, winged ... 316 4e-85 UniRef50_Q07HK8 Two component transcriptional regulator, winged ... 315 5e-85 UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes Re... 315 5e-85 UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=... 315 6e-85 UniRef50_C8WVL8 Two component transcriptional regulator, winged ... 315 7e-85 UniRef50_C0WE14 Two-component system transcriptional regulator n... 315 1e-84 UniRef50_B2V7Q1 Two component transcriptional regulator, winged ... 315 1e-84 UniRef50_C7N1J8 Response regulator with CheY-like receiver domai... 315 1e-84 UniRef50_Q0ASG1 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_A9AYH1 Two component transcriptional regulator, winged ... 314 1e-84 UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 ... 314 1e-84 UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax... 314 2e-84 UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firm... 313 3e-84 UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillu... 313 4e-84 UniRef50_C7ND40 Two component transcriptional regulator, winged ... 312 5e-84 UniRef50_A6TL65 Two component transcriptional regulator, winged ... 312 5e-84 UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=F... 312 5e-84 UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candi... 312 6e-84 UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regu... 312 6e-84 UniRef50_Q8RBP2 Response regulators consisting of a CheY-like re... 312 6e-84 UniRef50_C6J108 Multi-component transcriptional regulator n=2 Ta... 312 7e-84 UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobact... 312 8e-84 UniRef50_UPI0001C42B3F two component transcriptional regulator, ... 312 8e-84 UniRef50_A6LXW1 Two component transcriptional regulator, winged ... 312 8e-84 UniRef50_UPI0001787D57 two component transcriptional regulator, ... 311 1e-83 UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putativ... 311 1e-83 UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=... 311 1e-83 UniRef50_A6TKQ5 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_B6BWN6 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_UPI0001C425A1 two component transcriptional regulator, ... 310 2e-83 UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromon... 310 2e-83 UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromo... 310 2e-83 UniRef50_C8VYB2 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_B8IM29 Two component transcriptional regulator, winged ... 310 2e-83 UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria Rep... 310 2e-83 UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicu... 310 3e-83 UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmic... 310 4e-83 UniRef50_B2IIX2 Two component transcriptional regulator, winged ... 309 4e-83 UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=... 309 4e-83 UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mits... 309 5e-83 UniRef50_A6W7C9 Two component transcriptional regulator, winged ... 309 5e-83 UniRef50_D0KWS3 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_D2LRZ5 Two component transcriptional regulator, winged ... 309 6e-83 UniRef50_P45606 Phosphate regulon transcriptional regulatory pro... 309 7e-83 UniRef50_B8GBX2 Two component transcriptional regulator, winged ... 309 7e-83 UniRef50_O34903 Uncharacterized transcriptional regulatory prote... 309 8e-83 UniRef50_A6VYK9 Two component transcriptional regulator, winged ... 308 9e-83 UniRef50_Q1AXX7 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_C8WP93 Two component transcriptional regulator, winged ... 308 1e-82 UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostri... 308 1e-82 UniRef50_Q38WB3 Two component system, response regulator n=58 Ta... 307 1e-82 UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bact... 307 2e-82 UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N... 307 2e-82 UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobi... 307 2e-82 UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax... 307 2e-82 UniRef50_B9XEM3 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicut... 307 2e-82 UniRef50_A4J2J4 Two component transcriptional regulator, winged ... 307 2e-82 UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfo... 307 3e-82 UniRef50_D0SP77 Phosphate regulon transcriptional regulatory pro... 307 3e-82 UniRef50_A5G0J5 Two component transcriptional regulator, winged ... 307 3e-82 UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04V... 307 3e-82 UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactob... 306 3e-82 UniRef50_C7LSY9 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_Q1GXN5 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_Q3KAS5 Two-component system, response regulator n=2 Tax... 306 4e-82 UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeoba... 306 4e-82 UniRef50_Q01RV3 Two component transcriptional regulator, winged ... 306 4e-82 UniRef50_Q01T10 Two component transcriptional regulator, winged ... 306 5e-82 UniRef50_C6HUL5 Two component transcriptional regulator, winged ... 306 5e-82 UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactob... 305 5e-82 UniRef50_C6CSH8 Two component transcriptional regulator, winged ... 305 6e-82 UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=... 305 6e-82 UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermop... 305 6e-82 UniRef50_Q2RUW2 Two component transcriptional regulator, winged ... 305 7e-82 UniRef50_B4CW77 Two component transcriptional regulator, winged ... 305 8e-82 UniRef50_C7N5H9 Response regulator with CheY-like receiver domai... 305 8e-82 UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63... 305 8e-82 UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged... 305 8e-82 UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6... 305 9e-82 UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus la... 305 9e-82 UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2E... 305 9e-82 UniRef50_B8G869 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_A6W3G3 Two component transcriptional regulator, winged ... 305 1e-81 UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory pro... 304 1e-81 UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostri... 304 1e-81 UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleid... 304 1e-81 UniRef50_A8ZSJ7 Two component transcriptional regulator, winged ... 304 1e-81 UniRef50_C7N192 Response regulator with CheY-like receiver domai... 304 2e-81 UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacilla... 304 2e-81 UniRef50_C9RLA0 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_A6M2A3 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_A6T3B9 Two components system response regulator n=48 Ta... 304 2e-81 UniRef50_P23620 Phosphate regulon transcriptional regulatory pro... 304 2e-81 UniRef50_Q3JG93 Response regulator protein n=61 Tax=Proteobacter... 304 2e-81 UniRef50_D1BL25 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_A6TSQ9 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_D1U371 Two component transcriptional regulator, winged ... 304 2e-81 UniRef50_A6LQJ3 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_Q02A31 Two component transcriptional regulator, winged ... 303 3e-81 UniRef50_C6J181 Two-component system response regulator n=1 Tax=... 303 3e-81 UniRef50_C6CWW2 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacilla... 303 4e-81 UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangi... 303 4e-81 UniRef50_B9XFI9 Two component transcriptional regulator, winged ... 303 4e-81 UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium c... 303 4e-81 UniRef50_C5CFK4 Two component transcriptional regulator, winged ... 302 4e-81 UniRef50_A9AVR8 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_A8LHM5 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_C6PZ92 Two component transcriptional regulator, winged ... 302 5e-81 UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family),... 302 6e-81 UniRef50_B8FLX7 Two component transcriptional regulator, winged ... 302 6e-81 UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostrid... 302 6e-81 UniRef50_D0LJX0 Two component transcriptional regulator, winged ... 302 7e-81 Sequences not found previously or not previously below threshold: UniRef50_B0G2J4 Putative uncharacterized protein n=1 Tax=Dorea f... 306 4e-82 >UniRef50_A7GKH0 Two component transcriptional regulator, winged helix family n=68 Tax=Firmicutes RepID=A7GKH0_BACCN Length = 238 Score = 356 bits (916), Expect = 3e-97, Method: Composition-based stats. Identities = 75/241 (31%), Positives = 125/241 (51%), Gaps = 7/241 (2%) Query: 1 MN--TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGK 58 M ++ +D+ E+ L+ YL + V G++A + +LV+LD+M+P Sbjct: 1 MKEIRVLIADDEKEIRDLLKKYLERELYTVDTAIDGEEALKLFTHNTYNLVILDLMMPKI 60 Query: 59 DGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 DG+ +CR LR + PI++LT+ D +++ I+ L +GA DYI K ++AR++ +R+ Sbjct: 61 DGIEVCRRLRNNTNIPILMLTAKDQEVDKIVGLSIGADDYITKPFSVNEVIARIKALMRR 120 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 QE L F LTID +VT+ + EISL+ + ELL A++ Sbjct: 121 FLVLGSNANTQE-----KTILTFKGLTIDISKYIVTVGDKEISLTGKELELLKFFASNPE 175 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 Q+ + L +N+ +Y D +V V I +LRKK+ + + P I+TV GY F + Sbjct: 176 QVFTKTQLFRNVWDSNYIEDDNTVMVHIRKLRKKIEADPSNPKFIQTVWGIGYKFVGEKY 235 Query: 239 E 239 E Sbjct: 236 E 236 >UniRef50_C6VLR9 Response regulator n=52 Tax=Firmicutes RepID=C6VLR9_LACPJ Length = 242 Score = 354 bits (909), Expect = 2e-96, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 1/239 (0%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M+ I+ V+D+ + +L++ L + +V G A L ++ +LLD+MLP DG Sbjct: 3 MDKILVVDDEPAIVTLLSYNLKQAGYEVVTATDGADALSLGLAQSFTCILLDLMLPKLDG 62 Query: 61 MTICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 M + + LR + PI+++T+ + + + + LE+GA DYI K P +LAR++ +R+ Sbjct: 63 MEVTKKLRQEKVQTPIIIVTAKNDEFDKVFGLELGADDYITKPFSPREVLARIKAVIRRT 122 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + G L ID V ISL+ +FELL G+ Sbjct: 123 TPDEPVTPPAPMPPANRAVMLVGDLQIDQNKYRVARNGKNISLTPKEFELLVYFVEREGR 182 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 ++ RDA+L ++ G Y R VD+ IS LR+K+ + +P I+TVR GY F Sbjct: 183 VLSRDAILNHVWGYDYASETRIVDIHISHLREKIEADPKQPRLIRTVRGFGYEFVGDGH 241 >UniRef50_D2BG66 DNA-binding response regulator, two-component system, OmpR family n=8 Tax=Bacteria RepID=D2BG66_DEHSV Length = 256 Score = 354 bits (909), Expect = 2e-96, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 116/234 (49%), Gaps = 7/234 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 + I+ VEDDA + L+ LAK + G +A T P LV+LD+MLPG DG Sbjct: 30 HKILVVEDDATLRELLCYNLAKEGYTLECAEDGLKALGTYRLFKPSLVILDVMLPGIDGF 89 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +R + S PI++LT+ S+ + + LE GA DY+ K LLAR++ LR+++ Sbjct: 90 ELCRLIRTESSVPILMLTARSSESDKVNGLEAGADDYLSKPFGMRELLARMKALLRRSQT 149 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 L G L I +V + S +F+L + + ++ Sbjct: 150 QNSQTETTGG-------LKIGDLEIFIERHLVMRNGVALDFSPKEFDLFSFMVQNRCRVF 202 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R+ LL+ + G Y G R+VDV IS LR+K+ + + P + TVR GY F Sbjct: 203 SREQLLEKVWGYDYPGWTRTVDVHISWLRQKIEADPSSPRHLITVRGTGYKFEE 256 >UniRef50_Q67MV1 Two-component response regulator n=7 Tax=Clostridiales RepID=Q67MV1_SYMTH Length = 229 Score = 350 bits (900), Expect = 2e-95, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 123/236 (52%), Gaps = 8/236 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+D+ + + L + QVT G +A + DL++LD+MLPG DG Sbjct: 1 MPHILVVDDEPGLVKGLRLSLEQEGFQVTTASDGREALSKFRAGDFDLIVLDLMLPGVDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +TICR++RA PI++LT+ D++ IL LE+GA DYI K L+AR+R LR+ E Sbjct: 61 LTICREVRAAGMTPIIMLTAKADDIDKILGLELGADDYITKPFNTRELIARIRAVLRRAE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 A+ L G L + P R +A + L+ +++LL LA H G + Sbjct: 121 AASRQDR--------AGRLVVGDLVLHPRQRRAEVAGRPLELTAREYDLLELLARHPGVV 172 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R LL + G + G +R+VDV + R+R+KL ++ + P ++T GY Sbjct: 173 YTRQELLDLVWGYDFAGDERTVDVHVRRIREKLEEDPSRPRYLRTKWGVGYYLEAE 228 >UniRef50_A1HRL8 Two component transcriptional regulator, winged helix family n=2 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HRL8_9FIRM Length = 231 Score = 349 bits (897), Expect = 5e-95, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 129/236 (54%), Gaps = 7/236 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+DD ++ ++ AYL K V G +A + + PD+VLLD+MLP DG Sbjct: 2 KVLVVDDDEKILKVLTAYLEKEGYSVITARDGWEAVDKARQLGPDIVLLDVMLPSLDGWG 61 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C+++R PI++LT+ D + + I+ LE+GA DY++K P +LAR+R R+ + A Sbjct: 62 VCKEIRRTSDVPIIMLTARDDEADRIIGLELGADDYVIKPFSPKEVLARMRAIFRRLQPA 121 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + G + L G +D +R +T+A T + L+ +++LL H GQ+ Sbjct: 122 SRRDG-------GERILKVGDAVLDQNSRSLTIAGTPVELTPTEYKLLELFLAHPGQVFS 174 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 R L++ ++ +++G +R+VD I LRKKL + EP+ IKT+ GY Sbjct: 175 RLQLIEKVQDYAFEGYERTVDSHIKNLRKKLGASPDEPHYIKTIYGVGYKLVGEQH 230 >UniRef50_A9VV65 Two component transcriptional regulator, winged helix family n=24 Tax=Bacillus RepID=A9VV65_BACWK Length = 236 Score = 349 bits (897), Expect = 5e-95, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 126/238 (52%), Gaps = 5/238 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VED+ + + YL + + +V G + + L PDL++LD+M+P KDG Sbjct: 1 MKKILIVEDEENIREVCKRYLEREEYEVYTAVNGTEGWDVFLTHQPDLIILDLMMPKKDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C ++R + + PI++LT+ + + IL L MGA DY+ K P L+ R+++ LR+ Sbjct: 61 WELCGEIRQQSNVPIIMLTAKGEERDRILGLTMGADDYLTKPFSPRELVLRVQIILRR-- 118 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + + + + F L I P R V + E+ L+ +FE+L+ +A H Q+ Sbjct: 119 ---GNQVAIQAKESLSEVIEFPDLKIYPKTRCVLVCENEVELTVKEFEVLYVMAKHPKQV 175 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 R LL+ + ++G +V V +SRLR+KL + + + I TV GY F P+ Sbjct: 176 FSRSQLLELIWDFGHEGASNTVTVLVSRLREKLEKHTIKNHWIHTVWGIGYRFEPNGR 233 >UniRef50_A8F5W8 Two component transcriptional regulator, winged helix family n=24 Tax=Bacteria RepID=A8F5W8_THELT Length = 263 Score = 347 bits (893), Expect = 2e-94, Method: Composition-based stats. Identities = 78/241 (32%), Positives = 125/241 (51%), Gaps = 9/241 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+DD + L++ LA+ V ++A + + E+ D+ ++DIMLPG DG Sbjct: 28 KKILVVDDDPSIIELVSYNLAREGYDVLKAYDAEEALKVVGNESVDMFIVDIMLPGMDGF 87 Query: 62 TICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 + R LR + P+V L++ + + +L LE+GA DYI K ++AR++ R+ Sbjct: 88 ELVRQLRSMEKYRNTPVVFLSAKGEEFDKVLGLELGADDYITKPFSIREMIARIKAVFRR 147 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 + + + + K + L ID V + + ++SL+ +FELL LA + G Sbjct: 148 IQLSAQEREERP------KKIVAKGLEIDVERYEVKVHDQKVSLTPLEFELLRFLAENEG 201 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 ++ RD LL L G Y G R+VDV I RLR K+ ++ + P I TVR KGY F Sbjct: 202 KVFSRDVLLDKLWGYDYYGDTRTVDVHIRRLRTKIEEDPSNPKYIITVRGKGYKFRDPGK 261 Query: 239 E 239 E Sbjct: 262 E 262 >UniRef50_C7N0N0 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=42 Tax=Bacteria RepID=C7N0N0_SLAHD Length = 240 Score = 347 bits (891), Expect = 2e-94, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 123/238 (51%), Gaps = 9/238 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VED+ + +AAYL + + VT G A E + + DLV+LD+MLP G Sbjct: 9 RRILLVEDEKAIRDAVAAYLERENYWVTAVGDGQDALEEFSKHHFDLVILDLMLPRVPGE 68 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +R PI++LT+ + I+ LE+GA DY++K P L+AR+R LR+ Sbjct: 69 RVCRAIRDNSDVPIIMLTAKGEVEDRIIGLELGADDYLVKPFSPRELVARVRALLRRVH- 127 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 S + L FG LTID V + E+ L+ ++F+LL L+ + G++ Sbjct: 128 --------ADSEPQREVLEFGELTIDVSGHKVLVGGKEVDLTASEFKLLTTLSRYPGRVY 179 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 R L++ + G ++G +R++D + LR K+ DN P + TV GY F + Sbjct: 180 SRMELVEKVLGYDFEGYERTIDSHVKNLRAKIGDNPRNPKWLHTVHGVGYRFEDPTKQ 237 >UniRef50_Q897D5 Two-component response regulator n=8 Tax=Clostridiales RepID=Q897D5_CLOTE Length = 233 Score = 346 bits (890), Expect = 3e-94, Method: Composition-based stats. Identities = 68/231 (29%), Positives = 120/231 (51%), Gaps = 5/231 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 NTI+ V+D+ E+ LI YL +V G +A E + +E DL++LDIM+P DG+ Sbjct: 4 NTIIVVDDEKEIRDLICIYLENEGYRVIKAENGIKALELLEKEKVDLIILDIMMPNMDGI 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 C +R + + PI++L++ DM+ I L GA DY+ K P L+AR++ LR+ ++ Sbjct: 64 EACTKIREEKNMPIIMLSAKTEDMDKIWGLTAGADDYMTKPFNPLELIARVKSQLRRYKK 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + + LTI+ V + ++ L+ +F++L LA + G + Sbjct: 124 FNV-----QNGYINDDIIEIDELTINTATHEVQVGEKKVRLTPREFDILELLARNKGIVF 178 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + + + + + D +V V I +LR+K+ +N +P +KTV GY Sbjct: 179 SIEKIYERVWKEEFFKSDNTVMVHIRKLREKIEENPRKPKYVKTVWGVGYK 229 >UniRef50_C9KKD5 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KKD5_9FIRM Length = 235 Score = 346 bits (890), Expect = 3e-94, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 126/237 (53%), Gaps = 9/237 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+D+A + L++ L K +V + G A + DLVLLDIMLP DG Sbjct: 1 MQ-ILVVDDEAPIRELLSFNLKKSGYEVEMAADGRTALQRAPEA--DLVLLDIMLPEVDG 57 Query: 61 MTICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 + +CR L+ PI++LT+ +++ +L LE+GA DY++K LLAR++ LR Sbjct: 58 LEVCRQLKADPQTSGIPIIMLTAKAEEIDRVLGLELGADDYVVKPFSMRELLARVKAVLR 117 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 ++ + + ++L G L +D + L + I+L+ ++ELL L T+ Sbjct: 118 RS---ASVQKGSRENKEREESLTIGGLRLDFSSYQAWLHDKTIALTPKEYELLKLLVTNP 174 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 G+ RD LL+ + G Y G R+VDV I LR KL D+ I+TVR GY FA Sbjct: 175 GRAFSRDELLERIWGYEYYGDTRTVDVHIRHLRAKLKDDPTVSDAIETVRGVGYRFA 231 >UniRef50_B5YEK3 Response regulator DrrA n=5 Tax=Bacteria RepID=B5YEK3_DICT6 Length = 232 Score = 346 bits (890), Expect = 3e-94, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 132/235 (56%), Gaps = 10/235 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDD + + ++ L K +V V G +A NPDLVLLDIMLP KDG Sbjct: 1 MKKILLVEDDKGIVNSLSLLLNKEGYEVEVAYDGVEALNKFKLFNPDLVLLDIMLPEKDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+++R + PI++LT+ D +++ +L L+MGA DYI K LLAR+ LR+ + Sbjct: 61 WEVCKEIRKISNVPIIMLTAKDEEVDKVLGLKMGADDYITKPFGAKELLARIEAVLRRYQ 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + L+ + + +D + R V + E++LS +FE+L L + G++ Sbjct: 121 ----------SDLSKSQKIVAPPFEMDLVKRTVKVKGKEVNLSYREFEILKLLLSSPGRV 170 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 RD ++K++ G ++ G R+VDV I LR+K+ D+ + P I TVRN GY F Sbjct: 171 WTRDMIIKHIWGENFWGEPRAVDVYIRWLREKVEDDPSHPKYIITVRNLGYKFQE 225 >UniRef50_Q3A924 DNA-binding response regulator n=3 Tax=Bacteria RepID=Q3A924_CARHZ Length = 236 Score = 346 bits (888), Expect = 6e-94, Method: Composition-based stats. Identities = 70/236 (29%), Positives = 123/236 (52%), Gaps = 9/236 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+D+ ++ +++ +YL K +V G +A + +E PDL++LD M+P G+ Sbjct: 3 RKILIVDDEPKIVTMVKSYLLKEGYEVITAFNGREALNSFYKEKPDLIVLDWMMPEMSGI 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R++R K PI++LT+ +++ ++ E G DY++K L AR++ L++ Sbjct: 63 EVLREIRKKSQIPIIMLTAKTEEVDKLIGFEFGVDDYVVKPFSLRELSARIKTILKR--- 119 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 L+ ++ L G LT+ P R V L + L+ +F+LL + G+ Sbjct: 120 ------LEAKTINEEIVLTEGDLTLYPHKREVFLKGKPLDLTPTEFKLLEAFLKNPGKAY 173 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R LL+ G +Y+G +R++D IS LRKK+ + A P I+TV GY P Sbjct: 174 SRLELLEYAIGEAYEGYERTIDTHISNLRKKIEKDPANPEYIQTVFGIGYKLKPRG 229 >UniRef50_B1YK44 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=B1YK44_EXIS2 Length = 228 Score = 345 bits (886), Expect = 1e-93, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 12/233 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+A++ L+ + L K + Q T G +A + + R+ LVLLD+M+P DG+T Sbjct: 7 KILVVDDEAQMRDLLVSNLQKENYQTTTASNGQEALDLMQRDAFHLVLLDVMMPEMDGLT 66 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 C +R + PI++LT+ +++ I L++GA DYI K P LLAR+ LR++ + Sbjct: 67 ACMRIREFSNVPIIMLTARSDELDRIHGLKIGADDYITKPFSPRELLARIEATLRRSHRF 126 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T+ + L G L +D +R V ++ ISL+ +F+LL + ++ Sbjct: 127 TVDQSA---------TLTIGKLELDTESRSVHVSGKPISLTRKEFDLLHLFVQNNDKVFS 177 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R+ LL + G Y G R+VD I LR KL + I+TV GY F Sbjct: 178 REQLLDQIWGADYIGNLRTVDTHIKTLRLKLGEAGGS---IQTVWGIGYKFEE 227 >UniRef50_C0WUJ3 Response regulator n=3 Tax=Lactobacillus RepID=C0WUJ3_LACBU Length = 242 Score = 344 bits (883), Expect = 2e-93, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 121/235 (51%), Gaps = 1/235 (0%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ V+D+ + +L+ L + V G A I + D+VLLD+MLP G Sbjct: 1 MKKVLVVDDEPAIVTLLEYNLKQASFDVQNATNGADALSMIENNHYDIVLLDLMLPEMSG 60 Query: 61 MTICRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + + +R + P+++LT+ D++ + + LEMGA DY+ K P ++AR+ LR+ Sbjct: 61 EEVLKRIRMDRNDTPVIVLTAKDTEFDKVFGLEMGADDYVPKPFSPREVIARINAVLRRY 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 E++ + + G TID V++ + + L+ +FEL+ L H Q Sbjct: 121 EKSEPSNQQNAAPIKSGDIETTGPFTIDHKQYKVSVNDQNLKLTPKEFELMQYLVGHENQ 180 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ RD LL+ + G Y G R VD+ I+ LR+K+ + P +KT+R GY F+ Sbjct: 181 VLSRDQLLQGVWGFDYSGQSRMVDIQIAHLREKIELDPKRPKYLKTIRGFGYEFS 235 >UniRef50_Q21EC1 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=Q21EC1_SACD2 Length = 232 Score = 344 bits (883), Expect = 2e-93, Method: Composition-based stats. Identities = 83/233 (35%), Positives = 130/233 (55%), Gaps = 6/233 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ +ED ++ +LIA L D VT G + + DL++LDIMLP DG+ Sbjct: 3 KRILLIEDHQDINALIAMNLEVLDYHVTRCSDGAEGLHLGTTQTFDLIILDIMLPSMDGL 62 Query: 62 TICRDLRAKWS-GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ LRAK PI++LT+ S+ + ++ LE GA DY+ K L AR++ HLR+ + Sbjct: 63 QVCQHLRAKNIFTPILMLTAKKSESDRVVGLETGADDYLTKPFSVRELQARVKAHLRRTD 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 +E++ ALHFG L ID R +T+ + EI+L+ +F+LL +A+H GQ+ Sbjct: 123 M-----SQKESTPQADDALHFGELCIDKTKRRLTIGDKEITLTAKEFDLLLYMASHPGQV 177 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LL + G + G + +V+ I+RLR KL + + P + TV GY F Sbjct: 178 FSREKLLDAVWGYQHSGYEHTVNSHINRLRTKLETDTSNPKYVLTVWGVGYKF 230 >UniRef50_A9KR75 Two component transcriptional regulator, winged helix family n=64 Tax=Firmicutes RepID=A9KR75_CLOPH Length = 238 Score = 344 bits (883), Expect = 2e-93, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 125/233 (53%), Gaps = 3/233 (1%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+DDA + LI+ YL K + G++A P+L+LLD+MLPG DG Sbjct: 5 QKILIVDDDANIAELISLYLMKECFDTKIVYDGEEAITQYREYQPNLILLDLMLPGIDGY 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR++R + PI++L++ + +L LE+GA DY++K L+AR++ LR+ Sbjct: 65 EVCREVRKTSTIPIIMLSAKGEIFDKVLGLELGADDYMIKPFDTKELVARVKAVLRRV-V 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + Q + + + L I+ N VT I + + EL + LA+H Q+ Sbjct: 124 PSQSTSEQVITQELGDFVSYPDLIINQSNYSVTYFGDSIEMPPKELELFYFLASHPNQVF 183 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ LL ++ G Y G R+VDV I RLR+K+ D+ + +R+ TV GY F Sbjct: 184 TREQLLDHIWGYEYIGDTRTVDVHIKRLREKIKDHIS--WRLSTVWGIGYKFE 234 >UniRef50_C8VW64 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C8VW64_DESAS Length = 229 Score = 343 bits (881), Expect = 3e-93, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 124/238 (52%), Gaps = 10/238 (4%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 M I+ V+DD ++ ++ L K +V G++A + + +PDLV+LD+M+PG D Sbjct: 1 MPQRILTVDDDPKILKILQHSLGKEGFEVITASSGEEALQKARQSSPDLVILDLMMPGMD 60 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G + L+A+ PI++L++ +++ ++ MG DY K P L R++ LR+ Sbjct: 61 GFETYQKLKAQREVPIIILSARTEEVDRVVGFRMGVDDYQTKPFSPTELALRVKAVLRR- 119 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 L E + L +G LT+D R V + N+++ L+ FELLW +A++ + Sbjct: 120 --------LGEPKVNLENMLKYGNLTLDYTKRTVAVNNSKVELTPKQFELLWLMASNPNR 171 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + + LL + S+ G D +V V I RLR+K+ + + P IKTV GY F Sbjct: 172 VFTKAHLLDKIWDSSFYGDDNTVTVHIRRLREKVETDPSNPEYIKTVWGMGYKFEYEG 229 >UniRef50_A7WWQ5 Transcriptional regulatory protein walR n=685 Tax=Bacteria RepID=WALR_STAA1 Length = 233 Score = 342 bits (879), Expect = 7e-93, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 128/230 (55%), Gaps = 5/230 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +V V+D+ + ++ L K V G+ A + I E PD+VLLDIMLPG+DGM Sbjct: 3 RKVVVVDDEKPIADILEFNLKKEGYDVYCAYDGNDAVDLIYEEEPDIVLLDIMLPGRDGM 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR++R K+ PI++LT+ DS+++ +L LE+GA DY+ K L+AR++ +LR++ Sbjct: 63 EVCREVRKKYEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELIARVKANLRRHYS 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 T+ + + I P + +I L+ +FEL L+ H GQ+M Sbjct: 123 QPAQDTGNVTNE-----ITIKDIVIYPDAYSIKKRGEDIELTHREFELFHYLSKHMGQVM 177 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 R+ LL+ + G Y G R+VDV I RLR+K+ D+ + P I T R GY Sbjct: 178 TREHLLQTVWGYDYFGDVRTVDVTIRRLREKIEDDPSHPEYIVTRRGVGY 227 >UniRef50_B2A0K7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B2A0K7_NATTJ Length = 246 Score = 342 bits (878), Expect = 8e-93, Method: Composition-based stats. Identities = 80/244 (32%), Positives = 129/244 (52%), Gaps = 9/244 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M+ I+ VED+ + L+ L K +V GD+A + DL++LD+MLPG DG Sbjct: 1 MHRILLVEDEHHIAKLVNHNLIKEGYEVEHVTHGDEAFNKYFENDYDLIILDLMLPGLDG 60 Query: 61 MTICRDLRAKWS--GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR- 117 + +CR +R S P+++LT+ ++ I+ LEMGA DY+ K P LLAR++ LR Sbjct: 61 LEVCRKIRGNSSLHIPVIMLTAKSDEIEKIVGLEMGADDYVTKPFSPRELLARVKAQLRG 120 Query: 118 QNEQATLTKGLQETS------LTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLW 171 + ++ T K ++ G L+I P + N E+ L+ +FELL Sbjct: 121 RTKELTDEKSQDNSNKIFDQRDKSEDVKKNGPLSIKPEKYRAYIENQELQLTPKEFELLN 180 Query: 172 ELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 + T++GQ++ R+ LL+ + G + G R+VDV I LR+K+ + P ++TVR GY Sbjct: 181 IMVTNSGQVLTREKLLEKIWGYDFLGDTRTVDVHIRHLRQKISEAGGPPDLVETVRGIGY 240 Query: 232 LFAP 235 Sbjct: 241 RLKE 244 >UniRef50_C4Z0U9 Two-component system, OmpR family, phosphate regulon response regulator OmpR n=3 Tax=Clostridiales RepID=C4Z0U9_EUBE2 Length = 238 Score = 341 bits (876), Expect = 1e-92, Method: Composition-based stats. Identities = 77/231 (33%), Positives = 127/231 (54%), Gaps = 7/231 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+D+ + + L + +V G++A E + D++LLDIMLP DG++ Sbjct: 13 RVLVVDDEKMIVKGLKFSLMQDYSEVDCAYDGEEALEYVRNNKYDIILLDIMLPKLDGLS 72 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C+ +R + PI++LT+ DM+ IL L+ GA DYI K + AR++ LR+N Sbjct: 73 VCQQIREFSNVPIIMLTAKGDDMDKILGLDYGADDYITKPFNILEVKARMKAILRRNSSI 132 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T + + G + ID +R + +A+ EI+L+ +F+LL LA + G++ Sbjct: 133 TQKEQK-------SNVIKAGDMKIDCDSRSLYIADKEINLTAKEFDLLEILAVNPGKVYS 185 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 RD LLK + G Y G R+VDV + RLR+K+ +N +EP + T GY F Sbjct: 186 RDNLLKAVWGQDYTGDARTVDVHMRRLREKIENNPSEPKYVHTKWGVGYYF 236 >UniRef50_P35163 Transcriptional regulatory protein resD n=162 Tax=Bacteria RepID=RESD_BACSU Length = 240 Score = 341 bits (875), Expect = 2e-92, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 121/234 (51%), Gaps = 5/234 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+D+A + L+ YL + + + GD+A L N DL+LLD+M+PG DG+ Sbjct: 7 TKILVVDDEARIRRLLRMYLERENYAIDEAENGDEAIAKGLEANYDLILLDLMMPGTDGI 66 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +R K + PI++LT+ + N + E G DYI+K P ++ R++ LR+ Sbjct: 67 EVCRQIREKKATPIIMLTAKGEEANRVQGFEAGTDDYIVKPFSPREVVLRVKALLRRA-- 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + L F L+ID VT TE+SL+ ++ELL+ LA ++ Sbjct: 125 --SQTSYFNANTPTKNVLVFSHLSIDHDAHRVTADGTEVSLTPKEYELLYFLAKTPDKVY 182 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLD-NAAEPYRIKTVRNKGYLFA 234 DR+ LLK + + G R+VD + RLR+KL + +I TV GY F Sbjct: 183 DREKLLKEVWQYEFFGDLRTVDTHVKRLREKLNKVSPEAAKKIVTVWGVGYKFE 236 >UniRef50_C7H8D4 Two-component response regulator n=12 Tax=Bacteria RepID=C7H8D4_9FIRM Length = 299 Score = 340 bits (873), Expect = 3e-92, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 13/239 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+D+ + LI +L G A + DLV+LD+M+P DG Sbjct: 72 MAKILIVDDEPRIRELIREHLQYAGYVCEEAGDGSAALSLLSGGGFDLVILDVMMPFMDG 131 Query: 61 MTICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 MT R++RA+ + P+++LT+ + + + LE GA DY++K P L+AR++ L + Sbjct: 132 MTCLREMRARHINTPVIILTARGEEYDKLAGLEGGADDYVVKPFSPRELVARVKAVLNRT 191 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 S + FG LTID + V +A ++SL+ +F+LL LA++ G Sbjct: 192 ---------MPRSEASDGTMTFGELTIDTASHTVRVAGEDVSLTPKEFDLLVFLASNKGI 242 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 + R+ +L+ + Y G DR+VD + LR L I TV GY F P A Sbjct: 243 ALSREKILQKVWNYDYFGEDRTVDTHVKMLRGHLG---KCRGYIATVWGIGYKFDPDAA 298 >UniRef50_Q1AZ24 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AZ24_RUBXD Length = 234 Score = 339 bits (872), Expect = 4e-92, Method: Composition-based stats. Identities = 84/240 (35%), Positives = 131/240 (54%), Gaps = 12/240 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENP-DLVLLDIMLPGKD 59 M ++ VEDD V ++ L++ ++ P G+ A E + P DLVLLD+MLPG D Sbjct: 1 MARVLIVEDDPAVRDVVEHTLSREGIETETVPDGETALELLSDSKPFDLVLLDVMLPGMD 60 Query: 60 GMTICRDLRA----KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLH 115 G+++CR+LR + P+V+LT+ D + + ++ LE+GA DYI K P L +R+R Sbjct: 61 GISVCRELRESHSPHRTVPVVMLTARDDETSIVVGLEVGADDYITKPFSPRQLASRVRAQ 120 Query: 116 LRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELAT 175 LR+ Q + L F L ID + R VT ++ L+ +FE+L LA+ Sbjct: 121 LRRQRMNAQASPEQ-------RKLEFPGLEIDLLRRRVTARGEQVELTAREFEVLALLAS 173 Query: 176 HAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + G++ R+ ++ +L G + G RS DV I LR+K+ + P I+TVR GY FA Sbjct: 174 NPGRVYSREQIMDHLWGGEFFGEPRSADVHIQHLRQKIEPDPKNPRYIQTVRGMGYRFAE 233 >UniRef50_Q2FY79 Transcriptional regulatory protein srrA n=168 Tax=Firmicutes RepID=SRRA_STAA8 Length = 241 Score = 337 bits (867), Expect = 1e-91, Method: Composition-based stats. Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 6/236 (2%) Query: 1 MNT-IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 M+ I+ V+D+ + L+ YL + ++ G +A E + N +LLD+MLP D Sbjct: 1 MSNEILIVDDEDRIRRLLKMYLERESFEIHEASNGQEAYELAMENNYACILLDLMLPEMD 60 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G+ + LR PI++LT+ + N + E GA DYI+K P ++ R++ LR+ Sbjct: 61 GIQVATKLREHKQTPIIMLTAKGEETNRVEGFESGADDYIVKPFSPREVVLRVKALLRRT 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + + ++++ + F L ID V N E++L+ ++ELL LA + Sbjct: 121 Q----STTVEQSEPHARDVIEFKHLEIDNDAHRVLADNQEVNLTPKEYELLIYLAKTPNK 176 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAE-PYRIKTVRNKGYLFA 234 + DR+ LLK + + G R+VD + RLR+KL ++E + I+TV GY F Sbjct: 177 VFDREQLLKEVWHYEFYGDLRTVDTHVKRLREKLNRVSSEAAHMIQTVWGVGYKFE 232 >UniRef50_A0RK71 DNA-binding response regulator n=69 Tax=Bacillus cereus group RepID=A0RK71_BACAH Length = 232 Score = 337 bits (866), Expect = 2e-91, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 7/237 (2%) Query: 1 MNTI--VFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGK 58 M I + +D+AE+ LI +L K V G++A I + DLV+LDIM+P Sbjct: 1 MKRISILIADDEAEIADLIEIHLEKEGYHVVKAADGEEAIHIIETQPIDLVVLDIMMPKM 60 Query: 59 DGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 DG + R +RAK PI+ L++ SD + + L +GA DY+ K P L+AR+ LR+ Sbjct: 61 DGYEVTRQIRAKHHMPIIFLSAKTSDFDKVTGLVLGADDYMTKPFTPIELVARVNAQLRR 120 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 K + S L G + IDP R V + +I L+ +F++L+ LA+H Sbjct: 121 FLTLNQPKVAESKSA-----LEVGGVVIDPERRTVDVYGEQIELTPKEFDILYLLASHPK 175 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 ++ + + + + + Y +V V I LRKKL ++ + IKTV GY F Sbjct: 176 KVYNVENIFQQVWADDYFEGGNTVMVHIRTLRKKLGEDKRKNKLIKTVWGVGYTFNG 232 >UniRef50_P94413 Uncharacterized transcriptional regulatory protein yclJ n=77 Tax=Bacilli RepID=YCLJ_BACSU Length = 227 Score = 337 bits (865), Expect = 2e-91, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 121/235 (51%), Gaps = 10/235 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ +ED+ V ++ + K + G + + EN DL++LDIMLP DG+T Sbjct: 2 KILMIEDNVSVCTMTEMFFFKEGFEAEFVHDGLEGYQRFTEENWDLIILDIMLPSMDGVT 61 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 ICR +R + PI++LT+ D++ + ++ EMGA DY+ K P L+AR++ +R+ + Sbjct: 62 ICRKIRETSTVPIIMLTAKDTESDQVIGFEMGADDYVTKPFSPLTLVARIKAVIRRYKAT 121 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEIS-LSTADFELLWELATHAGQIM 181 ++ + TI+ R V L + L+ +F+LL+ L + Q+ Sbjct: 122 G-------KAVIDEDMIETECFTINKKTREVLLNGEPVENLTPKEFDLLYYLVQNPRQVF 174 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R+ LL+ + G + G +R+VDV I RLRKKL + + + TV GY F Sbjct: 175 SREQLLEQVWGYQFYGDERTVDVHIKRLRKKL--ASEDKPFLYTVWGVGYKFDED 227 >UniRef50_B8FYB6 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfitobacterium hafniense RepID=B8FYB6_DESHD Length = 237 Score = 337 bits (865), Expect = 2e-91, Method: Composition-based stats. Identities = 84/236 (35%), Positives = 124/236 (52%), Gaps = 11/236 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+DD V L+ Y + +V GD RENPD+V+LDIMLPG+DG++ Sbjct: 6 KVLVVDDDQNVLELVKLYGEREGFEVVAVDDGDLVLAAFDRENPDVVILDIMLPGQDGLS 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR LRA PI++LT+ + + +L LEMGA DY+ K P L+AR++ LR+++ A Sbjct: 66 LCRRLRAVRMIPIIMLTAKGEEADRVLGLEMGADDYVAKPFSPRELVARIKAVLRRSQAA 125 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 Q L + L I R V + E ++ +F+LL+ LA + ++ Sbjct: 126 DPATNWQ---------LKYPGLEIRADIRKVLVDAAESEVTPREFDLLYHLAQNPQRVFT 176 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 R+ LL + G Y G R+VDV I RLR KL E ++TV GY F P Sbjct: 177 REELLGAVWGYDYFGDQRTVDVHIRRLRTKLASLPHE--YLQTVWGVGYKFTPPVK 230 >UniRef50_A5N471 VanR n=21 Tax=Bacteria RepID=A5N471_CLOK5 Length = 232 Score = 336 bits (863), Expect = 4e-91, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 115/231 (49%), Gaps = 6/231 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+ + LI YL + G A + E +L +LD+MLP DG T Sbjct: 4 NILVVDDEQPIADLIEVYLKNEGFTIYKSYNGQDAFRCVESEQLELAILDVMLPDIDGFT 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C+ +R + P+++LT+ + +++ I L +GA DYI K P L+AR++ LR+ + Sbjct: 64 LCQRIRENHNFPVIMLTAKEEEIDKITGLTLGADDYITKPFRPLELVARVKAQLRRFTKY 123 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + QE + F L +D TL +ISL+ +F +LW L ++ G+++ Sbjct: 124 NSVEPNQE-----EHLIAFSGLILDMDTHECTLNEKKISLTPKEFSILWVLCSNRGRVVS 178 Query: 183 RDALLKNLRGVSYDGLD-RSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + L + G Y +V V I LR+K+ +A P IKTV GY Sbjct: 179 SEELFHEVWGDKYFTNSNNTVMVHIRHLREKMHGSAEHPKYIKTVWGVGYK 229 >UniRef50_B4U3Y8 Alkaline phosphatase synthesis transcriptional regulatory protein PhoP n=36 Tax=Bacilli RepID=B4U3Y8_STREM Length = 247 Score = 335 bits (862), Expect = 6e-91, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 116/235 (49%), Gaps = 5/235 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ V+D+ + L+ +LAK + G A RE D ++LDIMLP DG+ Sbjct: 10 KRVLLVDDEEPILRLLDYHLAKEGFVTEMVTDGRTALALAEREPYDFIVLDIMLPQLDGI 69 Query: 62 TICRDLRAK-WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ LR+K PI+++++ + + +LALE+GA DY+ K P LLAR++ LR+ E Sbjct: 70 EVCKRLRSKGSKTPIMMVSAKSDEFDKVLALELGADDYVTKPFSPRELLARVKAILRRTE 129 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 G + L + P V + L+ ++ELL L H Sbjct: 130 AEISGDGEEHREP----FYTMSQLRLYPERHEVYKDKELLPLTPKEYELLLYLMKHPNMT 185 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + R+ LL+ + G + R VDV I +LR+K+ DN P I+T+R GY F Sbjct: 186 LTRERLLERIWGYDFGQETRLVDVHIGKLREKIEDNPKAPQYIQTIRGYGYKFKE 240 >UniRef50_UPI0001C421AD two-component response regulator n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AD Length = 246 Score = 335 bits (861), Expect = 8e-91, Method: Composition-based stats. Identities = 76/243 (31%), Positives = 120/243 (49%), Gaps = 11/243 (4%) Query: 1 MNT----IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLP 56 M I+ +EDD E+ ++ YL + +V + G+ +P L+L+D+MLP Sbjct: 9 MKRMTETILVIEDDREISKILNEYLIREGYKVVMAHDGEDGLRRFASIHPHLLLVDLMLP 68 Query: 57 GKDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHL 116 DG +CR +R + PI+++++ SD++ I +L +GA DYI K P L+AR++ HL Sbjct: 69 KVDGFEVCRQVRQQSEVPIIVVSARQSDIDKIHSLGLGADDYITKPFSPLELVARVKSHL 128 Query: 117 RQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATH 176 R+ + K K L F LTI+ R+V ++L+ +FELL LA Sbjct: 129 RRYHRYNGLKEQ-------EKVLSFDGLTINTNRRMVENDGKPLTLTMKEFELLLTLAEA 181 Query: 177 AGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 GQ+ ++ L + R+V V I +R+KL D + P I TV GY F Sbjct: 182 PGQVFSKEQLYNRVWKQDDADDIRTVTVHIKNVRRKLGDGSKHPRFIDTVWGIGYKFIGQ 241 Query: 237 AWE 239 E Sbjct: 242 KHE 244 >UniRef50_Q67RH7 Two-component response regulator n=1 Tax=Symbiobacterium thermophilum RepID=Q67RH7_SYMTH Length = 231 Score = 335 bits (860), Expect = 1e-90, Method: Composition-based stats. Identities = 74/238 (31%), Positives = 116/238 (48%), Gaps = 11/238 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ +DD + ++ L V G +A + L + PDLV+LD+M+P DG Sbjct: 5 RRILVADDDPKTLKVLEHALTAEGFAVIKASDGQEALDLALSQRPDLVILDVMMPKVDGF 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C +RA + PI+LLT+ ++ ++ +GA DY+ K L+ R+ LR+ Sbjct: 65 AVCGRIRAASAVPILLLTARGDSVDKVVGFRLGADDYVTKPFDLNELVLRVHAILRRM-- 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 +L + L FG L I+ R V + + L+ +F+LLW +A+H G Sbjct: 123 ---------PTLPESRTLRFGHLEINKSTRTVHVGDRNPELTPREFDLLWLMASHPGHPF 173 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 R++LL + +V V I RLR+K+ DN A+P IKTV GY F P E Sbjct: 174 TRESLLARVWHGDAPTDQSTVTVCIRRLREKIEDNPAQPRWIKTVWGIGYKFDPAGAE 231 >UniRef50_A5UYZ0 Two component transcriptional regulator, winged helix family n=17 Tax=Bacteria RepID=A5UYZ0_ROSS1 Length = 236 Score = 334 bits (859), Expect = 1e-90, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 10/234 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M+TI+ V+D+ + ++ YL + V G +A E PDLV+LD+M+P G Sbjct: 1 MSTILVVDDEPALRDMLRLYLEQEGFHVVEAGDGRRALYVARVEKPDLVVLDLMMPEMGG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 R + P+++LT+ D + IL LE+GA DY+ K L+AR+R LR+ + Sbjct: 61 YEFLRAFAKESRTPVIVLTAKIEDTDKILGLELGADDYVTKPFNVRELIARIRAVLRRTQ 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 Q + L + +D R V + + L+ ++F +L L GQ+ Sbjct: 121 Q----------TPLEPDVLRAADIVLDRTGRTVRVGGRYVDLTPSEFAILATLMAAPGQV 170 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R LL + G +++G +R++DV I LR K+ + P I+TV GY FA Sbjct: 171 FSRLDLLDRVSGDAFEGSERTIDVHIRNLRAKIEADPRHPQYIETVYGMGYRFA 224 >UniRef50_C0Z5U8 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z5U8_BREBN Length = 261 Score = 334 bits (858), Expect = 1e-90, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 125/235 (53%), Gaps = 7/235 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ +DD V +I Y K +++ G +A E + +E PD+V+LD+M+P DG Sbjct: 34 KVLVADDDPNVREIIRLYFEKQQIELIAATDGREALEMMEKEQPDVVILDVMMPQLDGFE 93 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 CR++R KW PI++LT+ D + + +L LE+GA DY+ K P ++AR+R +R+ + Sbjct: 94 ACREIRKKWDTPIIMLTAKDEEFDRVLGLELGADDYVTKPFSPREIVARIRAIMRRLQPK 153 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + F LTID R V +A ++S +F+LL +L G + Sbjct: 154 P-----KVEDEAALRTFVFEQLTIDLDKREVIVAGEKVSFRPKEFDLLVQLVKSPGSVWS 208 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R+ LL+ + G Y G R++DV I ++R++L + I+TV GY F + Sbjct: 209 REQLLEQVWGFDYFGDVRTIDVHIKKIRQRLDKLPYD--CIQTVWGIGYKFGVDS 261 >UniRef50_B8G223 Two component transcriptional regulator, winged helix family n=11 Tax=Clostridia RepID=B8G223_DESHD Length = 234 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 63/233 (27%), Positives = 118/233 (50%), Gaps = 4/233 (1%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ V+D+ + ++ L + ++ G+ A E+ +E+PDLV+LD+MLP DG Sbjct: 5 YKVLLVDDEESIYRVVEQVLKREAYELLYADNGEGALESFQKESPDLVILDVMLPLIDGY 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +R PI++L++ ++ + +GA DY++K P L R++ LR++ Sbjct: 65 EVCRTIRETSKVPILMLSAKGEIIDKSVGFNLGADDYLVKPFSPVELGLRVKALLRRS-- 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 K + + + G L I+ + V + + L+ +FELL +A H Q+ Sbjct: 123 --FDKEQSVSKVRKTTKISKGELEINCESHEVFVRGKPVYLTPKEFELLTFMAEHPDQVF 180 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ L ++ Y ++ V I +LR+K+ + A+P I+TV GY F+ Sbjct: 181 TREQLFAHMWRDEYVNDTSTITVFIRKLREKIERDPAKPQYIQTVWGIGYKFS 233 >UniRef50_B8FSL6 Two component transcriptional regulator, winged helix family n=14 Tax=Bacteria RepID=B8FSL6_DESHD Length = 237 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 123/235 (52%), Gaps = 11/235 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ VED+A + I L +V G+ A + PDLV+LD+MLPG DG+ Sbjct: 7 KVLVVEDEASIRRFITLNLEMAGYEVGEAESGEDALALLTEFLPDLVVLDLMLPGIDGLE 66 Query: 63 ICRDLRAKWSGP-IVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+ +R P I++LT+ D + I+ LE+GA DY++K P L+AR++ LR+ ++ Sbjct: 67 VCQHIRETMPDPLIIILTAKGQDTDKIMGLELGADDYMVKPFNPFELIARIKAMLRRRDR 126 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + +G+L +D + N E+ L+ ++ LL + G+ + Sbjct: 127 YEAGRTG----------YTYGSLHLDTAANKLLKNNQEVELTPTEYSLLKMFMENPGKAL 176 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R+ +L + G Y G +++DV I RLR+K+ DN ++P IKT+ GY + P Sbjct: 177 RREEMLNGIWGEDYFGDTKTLDVHIRRLREKIEDNPSDPRYIKTIWGSGYRWQPE 231 >UniRef50_Q2RZP5 Response regulator DrrA n=11 Tax=Bacteria RepID=Q2RZP5_SALRD Length = 245 Score = 334 bits (858), Expect = 2e-90, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 125/235 (53%), Gaps = 6/235 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VEDD ++ L+ +L V V GD L E DL++LDIMLPG DG Sbjct: 7 KRILLVEDDDDIADLLELHLTDAGHAVDVVGDGDDGLARALTEAYDLIVLDIMLPGTDGF 66 Query: 62 TICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ICR LR + PI+++T+ +++ +L LE+GA DYI K +LAR++ R+ E Sbjct: 67 DICRRLRQEKCPTPILMVTAKTEEVDKVLGLELGADDYITKPFSIREVLARVKALFRRVE 126 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T+G + + + G + ++P R VT+ + L++ +FELL A H G+ Sbjct: 127 VDQETQGQADDTP-----IELGKVVVEPEKRKVTVEGEAVDLTSKEFELLLLFARHPGRA 181 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 RD LL + G Y G +V+ I+RLR K+ + +EP +KTV GY FA Sbjct: 182 FSRDELLDEVWGYQYSGYSHTVNTHINRLRNKIEPDPSEPRYVKTVWGVGYRFAE 236 >UniRef50_C6CSM8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacillales RepID=C6CSM8_PAESJ Length = 246 Score = 334 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 122/236 (51%), Gaps = 5/236 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ +D+ + + YL + +V V G++A PDL++LD+M+P DG+ Sbjct: 4 NIIVADDERNITDVCRRYLEREGHEVWVAENGEEAIRLWKEHRPDLLVLDLMMPKVDGLE 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C +R PI++LT+ + + +L L MGA DY+ K P L+ R+ LR+ Sbjct: 64 VCDLIRQTDDTPIIMLTARGEEPDRLLGLTMGADDYMTKPFSPRELVLRVHNILRRAGWR 123 Query: 123 TLTKGLQE-----TSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + + + +A++ L+I P R V++ +++ L+ +F+LL LA + Sbjct: 124 SEASPGERDAEKLSEEASGQAIYLEGLSIYPQERRVSVLESDVELTVKEFDLLHLLAMYP 183 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 G++ R LL + +++DG +V V + RLR+K+ N ++P IKTV GY Sbjct: 184 GKVFSRSQLLNQVWDIAFDGDTTTVTVHVRRLREKIEPNPSDPTWIKTVWGIGYKL 239 >UniRef50_C6D6P8 Two component transcriptional regulator, winged helix family n=17 Tax=Firmicutes RepID=C6D6P8_PAESJ Length = 238 Score = 334 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 119/239 (49%), Gaps = 7/239 (2%) Query: 1 MNT--IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGK 58 M I+ EDD ++ LIA +L K Q+ G +A + DLV+LDIM+P Sbjct: 3 MQRTTILIAEDDPDIAELIALHLGKEGYQLLKAADGREAVRLVQTNTIDLVILDIMMPHM 62 Query: 59 DGMTICRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 DG + R +R ++ PI+ L++ SD + I L MGA DY+ K P LLAR+ LR Sbjct: 63 DGYEVVRVIREQQYRMPIIFLSAKTSDFDKISGLVMGADDYMTKPFNPMELLARVNAQLR 122 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + Q + + + G LTID R VTL N I L+ +F++L+ LA+H Sbjct: 123 RFRQLNQPVAAPTHAASA---IVAGGLTIDQEQRNVTLYNDRIDLTPKEFDILYLLASHP 179 Query: 178 GQIMDRDALLKNLRGVSYD-GLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 ++ + + + + G +Y +V V I LRKKL ++ IKTV GY F Sbjct: 180 KKVFSAEHIFQQVWGEAYYESGGNTVMVHIRTLRKKLGEDKQHQQWIKTVWGVGYAFQG 238 >UniRef50_B8G179 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiales RepID=B8G179_DESHD Length = 234 Score = 334 bits (857), Expect = 2e-90, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 128/237 (54%), Gaps = 15/237 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDDA + L+ L + V + G++A E + +E PDLVLLD+MLP DG Sbjct: 1 MVKILLVEDDAVIQELVTYNLEREGYTVMIAEEGNKALELLNKEKPDLVLLDVMLPELDG 60 Query: 61 MTICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 + +C+ +R + P+++L++ D + ++ LE+GA DYI K P LLAR++ LR Sbjct: 61 LDVCKKIRGNQETANIPLIMLSARDEVADRVIGLELGADDYITKPFSPRELLARIKARLR 120 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + S P +L +G L I P + +VT+ +++L+ +FELL Sbjct: 121 ---------EERRNSTPPPLSLTWGDLEIWPESYMVTIKGEQVTLTGKEFELLHIFMKRP 171 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 Q+ R+ LL+ + G + G R+VDV IS LR KL + I++VR GY A Sbjct: 172 NQVFSREYLLQKVWGYTVSGDTRTVDVHISNLRSKLK---SVSPIIESVRGVGYRLA 225 >UniRef50_C4L340 Two component transcriptional regulator, winged helix family n=5 Tax=Bacillales RepID=C4L340_EXISA Length = 229 Score = 333 bits (856), Expect = 2e-90, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 117/237 (49%), Gaps = 12/237 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ +D+ ++ L+ + L K + G +A E + E LVLLD+M+P DG Sbjct: 5 MFRILVTDDEEQMRDLLVSNLEKEGYETVTASNGLEAIERLKEETFHLVLLDVMMPELDG 64 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +T C +R + PI+LLT+ +++ I L++GA DYI K P LLAR+ LR+ Sbjct: 65 LTACMRIREFSNVPIILLTARSEELDRIHGLKIGADDYITKPFSPRELLARIEATLRRTH 124 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + G L+ID R V++ ++L+ +F+LL+ T+ ++ Sbjct: 125 SFSKEQ---------EATFDVGILSIDIEGRAVSVKGKTVNLTRKEFDLLYLFITNDEKV 175 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R+ LL + G Y G R+VD I LR KL + I+TV GY F + Sbjct: 176 FSREQLLDQIWGTEYHGNLRTVDTHIKTLRLKLGEAGG---YIQTVWGIGYKFEANG 229 >UniRef50_P39663 Alkaline phosphatase synthesis transcriptional regulatory protein sphR n=34 Tax=Cyanobacteria RepID=SPHR_SYNE7 Length = 257 Score = 333 bits (855), Expect = 3e-90, Method: Composition-based stats. Identities = 75/242 (30%), Positives = 121/242 (50%), Gaps = 19/242 (7%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILR---------ENPDLVLLDI 53 I+ VED+A + ++A L + V V G A ENPDLV+LD+ Sbjct: 25 RILVVEDEAVIRDMVALVLQQEGFTVDVAADGRTALNYFRSDSPEAGSVTENPDLVVLDL 84 Query: 54 MLPGKDGMTICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARL 112 MLP +G+ CR LR + + PI++L++ D++ + ++ LE+GA DY+ K L+AR Sbjct: 85 MLPAVNGLDFCRLLRRQGVTVPILMLSAKDTETDRVVGLEIGADDYLTKPFGTRELVARC 144 Query: 113 RLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWE 172 R LR+++ L + L + P V L + E++LS +F LL Sbjct: 145 RALLRRSQNQPAETPA---------VLRYEGLKLFPEECRVLLDDRELTLSPKEFRLLEL 195 Query: 173 LATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 H ++ RD LL+ + G+ + G +++DV I LR+K+ N + P + TVR GY Sbjct: 196 FMRHPRRVWSRDQLLEKIWGIDFMGDSKTIDVHIRWLREKIEANPSNPSYLLTVRGFGYR 255 Query: 233 FA 234 Sbjct: 256 LG 257 >UniRef50_Q9F868 Sensory transduction protein regX3 n=47 Tax=Bacteria RepID=REGX3_MYCS2 Length = 228 Score = 333 bits (855), Expect = 4e-90, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 125/235 (53%), Gaps = 7/235 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M +++ VED+ + +A L K + TV G A R D+VLLD+MLPG G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVGDGPSALAEFERSGADIVLLDLMLPGMSG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ LRA+ S P++++T+ DS+++ ++ LE+GA DY+ K L+AR+R LR+ Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR-- 118 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + L G + +D VV++ I+L +F+LL L ++G++ Sbjct: 119 -----GADNDDAGADDGVLEAGPVRMDVERHVVSVNGEPITLPLKEFDLLEYLMRNSGRV 173 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + R L+ + G Y G +++DV + RLR K+ ++ A P + TVR GY Sbjct: 174 LTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEEDPANPVHLVTVRGLGYKLEG 228 >UniRef50_Q2JED0 Two component transcriptional regulator, winged helix family n=72 Tax=Bacteria RepID=Q2JED0_FRASC Length = 321 Score = 332 bits (854), Expect = 5e-90, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 112/233 (48%), Gaps = 9/233 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+DDA V ++ YL V G A PDLV+LD+MLPG DG+ Sbjct: 57 RVLVVDDDALVSEVVDRYLRNAGFDVDRAADGPTALRVAETTPPDLVVLDLMLPGLDGIE 116 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 + R LRA P+++LT+ + + I LE+GA DY+ K P L R++ LR+ Sbjct: 117 VFRRLRAHRPVPVIMLTARADESDRITGLEIGADDYVTKPFSPRELTLRVQSVLRRA--- 173 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + L GTL +D R T + L+ +F+LL L G+ Sbjct: 174 -----NETVPGAEAGVLRAGTLVVDAAARTATRHGVPLGLTVREFDLLAFLLRRPGRAFT 228 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R LL+++ G SY G +V V I RLR+K+ D+ P + TV GY + P Sbjct: 229 RGELLEHVWGWSY-GDPSTVTVHIRRLREKIEDDPTAPRMLVTVWGVGYRYDP 280 >UniRef50_B2A1Z8 Two component transcriptional regulator, winged helix family n=2 Tax=Firmicutes RepID=B2A1Z8_NATTJ Length = 233 Score = 332 bits (853), Expect = 6e-90, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 120/236 (50%), Gaps = 13/236 (5%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ V+DD ++ +++ L V + G E + + N + V+LDIMLP DG Sbjct: 4 QQVLIVDDDKDLCNMVKLTLEHEGFSVDMAYDGKTGYEYVEKYNYNTVILDIMLPEMDGW 63 Query: 62 TICRDLRA---KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 +C +R PI++LT+ + + I+ L++GA DY++K P L+AR+R +R+ Sbjct: 64 EVCHKIRNSINNSKVPIIMLTAKVEEDDKIMGLKLGADDYVIKPFSPRELVARVRALIRR 123 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 ++ K L G LT+D + V + + E+ L +FELL+ L + Sbjct: 124 DQDFK----------DKDKILEKGDLTVDAHSYKVFVKDNEVDLPPKEFELLYLLIKNPE 173 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ R+ +L+ + G S+ G R+VD + R+RKKL + I+TV GY F Sbjct: 174 RVFTREEILEKIWGFSFAGGTRTVDEHVKRIRKKLEPESGFDSLIQTVWGVGYKFE 229 >UniRef50_C5D2L7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillaceae RepID=C5D2L7_GEOSW Length = 225 Score = 331 bits (851), Expect = 9e-90, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 116/233 (49%), Gaps = 13/233 (5%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 T++ V+D+ ++ L+ YL + G++A + + D++L+D+M+P DG Sbjct: 4 KTVLIVDDEEDMRFLVGMYLENANFSYLEAENGEEALQILKNNKVDVILIDVMMPKMDGF 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 T+C +R + PI+ LT+ + + + L++G DYI+K P L+AR+ +R+ Sbjct: 64 TLCARIREQSDVPILFLTARGDEWDKVKGLKLGGDDYIVKPFSPGELIARIEAIMRRAYH 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + L FG L ID R VT+ + L+ +F+LL LA H GQ+ Sbjct: 124 ----------NKQKNEDLSFGPLVIDERGRKVTVDGDPVVLTLKEFDLLLFLAKHHGQVF 173 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ LL + G Y G R+VD I LR KL + I+TV GY F Sbjct: 174 SREDLLAQVWGYDYTGNARTVDTHIKTLRMKLKQASD---FIQTVWGIGYKFE 223 >UniRef50_Q186H9 Two-component response regulator n=28 Tax=Bacteria RepID=Q186H9_CLOD6 Length = 233 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 121/232 (52%), Gaps = 4/232 (1%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 MN I+ V+D+ E+ LI YL V G +A E I +N D+ +LDIMLP D Sbjct: 1 MNENILIVDDEKEIADLIEVYLKNEGFTVYKFYTGKEALECIESKNLDMAILDIMLPDID 60 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G IC+ +R K+ PI++LT+ D++ I+ L +GA DYI K P ++AR++ LR+ Sbjct: 61 GFHICQKIREKYYYPIIMLTAKIEDIDKIMGLTIGADDYITKPFNPLEVVARVKTQLRRY 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + + Q + Y L I+ +L E++L+ +F +LW L H G+ Sbjct: 121 MRYNNSYEQQSIIVNEYD---IKGLIINKETHKCSLFGKEVALTPIEFSILWYLCEHQGK 177 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 ++ + L + + G Y + +V I RLR+K+ + + P IKTV GY Sbjct: 178 VVPSEELFEAVWGEKYLDNNNTVMAHIGRLREKIHEPSKNPKFIKTVWGVGY 229 >UniRef50_B0TCF4 Two-component response regulator resd n=4 Tax=Firmicutes RepID=B0TCF4_HELMI Length = 240 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 5/238 (2%) Query: 1 MNT---IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPG 57 MN ++ VED+ ++ ++ +L + V A E + + DLV+LD+M+PG Sbjct: 1 MNKAATVLLVEDEEKIRRMLRLFLEQEAFGVVEAEECRPALEILRQGQVDLVILDVMMPG 60 Query: 58 KDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 DG T CR +R PI+ LT+ + + +L E+GA DY++K P L+ R++ LR Sbjct: 61 LDGWTTCRKIREFSEVPILFLTARGEESDRVLGFELGADDYVIKPFSPRELVLRVKALLR 120 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + +T + + +TP K LHF L++ P R + +SLS +++LL LA +A Sbjct: 121 R-RSSTPPQRDKAQEMTPEKGLHFPELSLYPEGRKAVVKGETLSLSPLEYDLLLYLAQNA 179 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLD-NAAEPYRIKTVRNKGYLFA 234 G+++ RD LL + G + G R+VD + RLR+KL + A + TVR GY F Sbjct: 180 GRVLSRDLLLDRVWGYEFAGDSRTVDTHVRRLREKLSRISPAVASYVGTVRGSGYKFE 237 >UniRef50_C6CZ95 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CZ95_PAESJ Length = 238 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 112/233 (48%), Gaps = 9/233 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+D+ + LI L V G+ E + PDL++LD+MLP DG+ Sbjct: 3 KKILVVDDEPSISMLIEFNLKLAGYDVRCVSDGEAVFEMLKPFRPDLIVLDLMLPKMDGI 62 Query: 62 TICRDLRAKWS-GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR+LR + + PIV+LT+L + I L+ GA DY+ K P L++R++ R+ + Sbjct: 63 QVCRELRKQSNAVPIVMLTALQDVTDKIAGLDNGADDYMTKPFSPQELISRIQAIFRRIQ 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 G LT+ R V + I L+ +FELL L H G++ Sbjct: 123 TLPGQ--------AESTTFDIGRLTVRAEQREVLIDGRTIELTPKEFELLLFLCKHRGKV 174 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + R LL + + G R VDV IS LR K+ NA P I TVRN GY Sbjct: 175 LSRQQLLHGVWDYHFLGDTRIVDVHISHLRDKIEQNARTPEYIMTVRNVGYKL 227 >UniRef50_B3QW38 Two component transcriptional regulator, winged helix family n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW38_CHLT3 Length = 239 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 6/233 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ +EDD ++ +L+ L+ + G E L N D+++LD+MLP DG+ Sbjct: 4 KKVLIIEDDFDIANLVKINLSDIGCDCDIAGDGLSGIEYALSNNYDVIILDMMLPKLDGL 63 Query: 62 TICRDLRAKWS-GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ LR PI++LTS + + + +L GA DYI K L AR+ H+R+ Sbjct: 64 EVCQRLRKNHILVPILMLTSRSEEDDKVTSLNAGADDYITKPFSIRELTARVIAHIRRYR 123 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + + K F L +D N VTLA+ EI ++ +F+LL + G+ Sbjct: 124 P-----EKEPSFINSKKTFLFDGLCLDTENHKVTLASKEIEITAKEFDLLSLFMKNPGRT 178 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R LL + G SY G + +V+ I+RLR K+ +N A+P I TV GY F Sbjct: 179 YSRTELLDLVWGASYSGYEHTVNSHINRLRMKIEENPAKPKYILTVWGVGYKF 231 >UniRef50_P72948 OmpR subfamily n=21 Tax=Bacteria RepID=P72948_SYNY3 Length = 245 Score = 331 bits (850), Expect = 1e-89, Method: Composition-based stats. Identities = 72/241 (29%), Positives = 114/241 (47%), Gaps = 16/241 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDD E+ LI L + V G+ + PDL++LD+MLP DG Sbjct: 11 MPNILIVEDDQEIAQLIRETLEREQFTCIVTNDGETGLRIFQEQVPDLIVLDLMLPKLDG 70 Query: 61 MTICRDLRAK---WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 + +C +R + I++LT+ +++ I+ L GA DY++K P L+AR+R LR Sbjct: 71 LEVCTRIRQQPGSKDPYILMLTAKGEEIDRIIGLSTGADDYLVKPFSPRELVARVRALLR 130 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTL----ANTEISLSTADFELLWEL 173 + + G + +D + E+ L+ +F LL Sbjct: 131 RQLRQGQPVG---------QIYRTNHFQVDLDQHQASRYQGDRQEELELTGLEFNLLATF 181 Query: 174 ATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ G++ +R L++ L G + G +R VD I RLRKK+ + A P IKTV GY F Sbjct: 182 MSYPGRVWNRTQLIEKLWGNDFFGDERVVDTHIRRLRKKIEPDPANPTFIKTVIGLGYKF 241 Query: 234 A 234 Sbjct: 242 E 242 >UniRef50_C3KZU0 DNA-binding response regulator n=14 Tax=Firmicutes RepID=C3KZU0_CLOB6 Length = 235 Score = 330 bits (848), Expect = 2e-89, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 114/234 (48%), Gaps = 5/234 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ VEDD + ++I L K + G +A E EN +V++DIM+P DG+ Sbjct: 5 KILIVEDDVNINNMIKESLIKEGYDIEQAFHGLEAVEKFQGENYHMVIMDIMMPVMDGIE 64 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 R +R K PI++L++ D + I+ L MGA DYI+K L+AR++ ++R+ Sbjct: 65 SMRRIREKSKVPIIILSAKGEDSDKIIGLGMGADDYIVKPFSVPELIARVKCNIRRAIYY 124 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 TK ++E K +G + D N VT E++L+ + ++L + ++ Sbjct: 125 NETKSIKEN-----KIYEYGDVKFDMNNYTVTKGGKELTLTAKEMKILKLFFENPNRVFT 179 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 + + ++ G + +V V + RLR K+ D+ P I+TV GY Sbjct: 180 KVQIYDSVWGEEFLSDYNTVTVHMRRLRSKIEDDPNNPKLIETVWGIGYKLTGD 233 >UniRef50_B8I272 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=B8I272_CLOCE Length = 237 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 123/237 (51%), Gaps = 5/237 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ ++D+ EV LI YL K QV G A E NPDL++LD++LP +G+ Sbjct: 5 KILIIDDETEVIDLIKLYLLKDGFQVITATNGSTALELTNSHNPDLIILDVLLPDTNGLE 64 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C++LR PI+ L+ +DM+ IL L +G DYI K P+ L+AR+ HLR+N Sbjct: 65 LCQNLRKITESPILFLSCKCTDMDKILGLTVGGDDYITKPFSPSELVARINAHLRRNRIL 124 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T +T+ L+ LTID N + + + + L+ +FE+L L+ H + Sbjct: 125 T-----NQTNSADLSILNIAGLTIDFANYTLYVDDKPVVLTVKEFEILSLLSQHPNMVFS 179 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 L ++ GV G R+V V IS LRKK+ + A P I T++ GY A E Sbjct: 180 LTQLYDHIWGVDNIGDTRTVMVHISNLRKKIEKDPANPKLIVTIKGIGYKLDTTAPE 236 >UniRef50_B2TJG9 Regulatory protein VanR n=6 Tax=Firmicutes RepID=B2TJG9_CLOBB Length = 231 Score = 330 bits (847), Expect = 3e-89, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 4/235 (1%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ ++D+ E+ LI YL +V G I E +V+LD+M+PG DG Sbjct: 1 MFNVLIIDDEVEIVELIEVYLVNEGYKVFKAYNGSDGINIINEEKIHVVVLDVMMPGIDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C +R ++ PI++L++ D++ I L GA DY++K P L+AR++ +R+ Sbjct: 61 FQVCMKIRKDYNIPIIMLSAKSQDVDKIQGLSTGADDYMIKPFNPMELIARVKSQIRRY- 119 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + + F +TI+ N V E+ L+ ++E+L LA + G + Sbjct: 120 ---VFLNEKSNKSNDIDIIEFKDITINKKNHKVLFLGKELKLTPIEYEILLLLANNLGTV 176 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + + K + Y + +V V I RLR+K+ +N EP I+TV GY Sbjct: 177 FSAEDIFKEVWKEKYFEGNNTVMVHIWRLREKIEENPKEPKIIETVWGVGYKIEE 231 >UniRef50_Q2BDN1 Two component transcriptional regulator, winged helix family protein n=2 Tax=Firmicutes RepID=Q2BDN1_9BACI Length = 234 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 124/232 (53%), Gaps = 4/232 (1%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD ++ ++ AYL+K ++ G +A + PDL++LD+ LP DG + Sbjct: 6 ILLVDDDPDIQNIQKAYLSKEGFRLAFAATGAEAVQLAGSLEPDLIILDVALPDMDGFEV 65 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 CR +R K PI+ L+ + D++ I+ +G DYI K P VL+A+++ H+R+ + Sbjct: 66 CRIIRTKTKVPILFLSGREDDIDQIIGHRIGGDDYITKPFSPPVLVAKVKSHIRRYK--- 122 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + + +AL FG L ID VT ISL+ +F+LL LA +AG++ Sbjct: 123 -ELSGSPKAASNGRALIFGELAIDRDCCEVTREGKPISLAAKEFQLLCCLAENAGRVFSA 181 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + L ++ G G R+V V IS LRKK+ + A P I TVR GY F Sbjct: 182 EHLFDSIWGKDSFGDIRTVMVHISNLRKKIEQDPARPEYIITVRGMGYKFNG 233 >UniRef50_O07130 Sensory transduction protein regX3 n=97 Tax=Actinobacteria (class) RepID=REGX3_MYCBO Length = 227 Score = 329 bits (845), Expect = 5e-89, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 125/235 (53%), Gaps = 8/235 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M +++ VED+ + +A L K + TV G A R D+VLLD+MLPG G Sbjct: 1 MTSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAGADIVLLDLMLPGMSG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ LRA+ S P++++T+ DS+++ ++ LE+GA DY+ K L+AR+R LR+ Sbjct: 61 TDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR-- 118 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 G + S L G + +D VV++ I+L +F+LL L ++G++ Sbjct: 119 ------GGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKEFDLLEYLMRNSGRV 172 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + R L+ + G Y G +++DV + RLR K+ + A P + TVR GY Sbjct: 173 LTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEADPANPVHLVTVRGLGYKLEG 227 >UniRef50_A5UPS1 Two component transcriptional regulator, winged helix family n=7 Tax=Chloroflexi RepID=A5UPS1_ROSS1 Length = 245 Score = 329 bits (845), Expect = 6e-89, Method: Composition-based stats. Identities = 88/237 (37%), Positives = 129/237 (54%), Gaps = 8/237 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M TI+ VEDD+ + ++ + QV G E R +PDL++LD+MLPG DG Sbjct: 1 MTTILLVEDDSVLLETLSYNFERAGFQVATASDGLTGLEMARRTHPDLIILDVMLPGLDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++CR + + + PIVLLT+L + + I LE+GA DY++K LLAR+R LR NE Sbjct: 61 FSVCRAVAKETTVPIVLLTALHDEAHRIAGLELGAIDYVVKPFSMGELLARVRAILRWNE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + T L G + +D +R V + EI LS +F+LL L +AG Sbjct: 121 RQRQTP--------SSNVLCVGPVQLDRNSRRVWYKDREIELSHKEFDLLACLMHNAGVA 172 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + RD LL+ + G + G +R++DV + LR+KL + A P I+TVR GY F A Sbjct: 173 LSRDLLLERVWGSDFLGSNRTIDVHVRWLREKLEPDPANPTLIRTVRGIGYCFQDPA 229 >UniRef50_A6LXL2 Two component transcriptional regulator, winged helix family n=3 Tax=Clostridiaceae RepID=A6LXL2_CLOB8 Length = 238 Score = 329 bits (844), Expect = 6e-89, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 116/237 (48%), Gaps = 7/237 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+ + +I AYL K V G A + EN L++LD+MLP G Sbjct: 6 KILVVDDEQNILDVIKAYLEKDGFDVITAMDGKSALDIYSNENIHLIVLDLMLPKMTGEE 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C +RA S PI++LT+ + I + MGA DY+ K L+ R+R LR+ + Sbjct: 66 VCNRIRAVSSVPIIMLTAKAEEDEKIEGISMGADDYLTKPFSVRELVVRVRALLRRAYR- 124 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + + G L +D VV ++L+T +F++L ++ Q+ Sbjct: 125 ------DFSPMADILTFNNGDLEVDIKKMVVKKQGVVVNLTTNEFKILTVFLSNPTQVFS 178 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 R+ L++ G +Y+G DR+VD I +R+K+ N EP I TV GY F P E Sbjct: 179 REKLVEKAFGANYEGFDRTVDSYIKNIRQKIESNHKEPTYITTVYGMGYKFIPSNGE 235 >UniRef50_O78428 Probable transcriptional regulator ycf27 n=18 Tax=cellular organisms RepID=YCF27_GUITH Length = 254 Score = 328 bits (843), Expect = 8e-89, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 122/233 (52%), Gaps = 7/233 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+D+A + ++ L+ V G++A +E PD+V+LDIM+P DG Sbjct: 16 KVLIVDDEASIRKILETRLSMIGYFVVTASDGEEALNLFHQEMPDVVILDIMMPKLDGYG 75 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C+++R PI++LT+L + I LE+GA DY++K P L AR+R LR+ +A Sbjct: 76 VCQEIRKDSDVPIIMLTALGDVADRITGLELGADDYVVKPFSPKELEARIRAVLRRTNKA 135 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + LT ++F LTID R + N I L+ +F LL L + +GQ Sbjct: 136 AFS-----SHLTTSGIINFNFLTIDLNKRQIYKDNERIRLTGMEFSLLELLISRSGQPFS 190 Query: 183 RDALLKNLRGV--SYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R +L+ + G R VDV ISRLR KL + + P I T R GYLF Sbjct: 191 RADILQEVWGYTPERHVDTRVVDVHISRLRAKLETDPSNPDLILTARGTGYLF 243 >UniRef50_P0AA18 Transcriptional regulatory protein ompR n=242 Tax=Bacteria RepID=OMPR_ECO57 Length = 239 Score = 328 bits (843), Expect = 9e-89, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 133/237 (56%), Gaps = 6/237 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+DD + +L+ YL + QV +Q + + RE+ L++LD+MLPG+DG+ Sbjct: 5 YKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLLTRESFHLMVLDLMLPGEDGL 64 Query: 62 TICRDLRAKWS-GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +ICR LR++ + PI+++T+ +++ I+ LE+GA DYI K P LLAR+R LR+ Sbjct: 65 SICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDYIPKPFNPRELLARIRAVLRRQA 124 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 QE + FG ++ R + + + L++ +F +L L +H + Sbjct: 125 NELPGAPSQE-----EAVIAFGKFKLNLGTREMFREDEPMPLTSGEFAVLKALVSHPREP 179 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + RD L+ RG Y ++RS+DV ISRLR+ + ++ A P I+TV GY+F P Sbjct: 180 LSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAHPRYIQTVWGLGYVFVPDG 236 >UniRef50_B8I014 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridium RepID=B8I014_CLOCE Length = 233 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 60/234 (25%), Positives = 112/234 (47%), Gaps = 6/234 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ VEDD E+ LIA L K G A E + + LV+LDIMLP G Sbjct: 6 KILIVEDDREINRLIADNLVKEGYCAISTHDGAAAVEKLRADEFQLVILDIMLPKVGGYE 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 + + +R K + P+++L++ + + I+ L +GA DY+ K L AR++ LR+ Sbjct: 66 VLQKIREKGNTPVLILSAKCEETDKIIGLGLGADDYLAKPFGIGELTARVKAQLRRYLNF 125 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + + + + ++ V + + ++L+ +FE+L + ++ Sbjct: 126 SWETDKR------TQIIRHMNIEMNVDTYEVKVGDNSVTLTAKEFEILKLFLQNPRKVFT 179 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 ++ L K++ G +Y + +V V I RLR+K+ + + P I+T+ GY Sbjct: 180 KNQLFKSIWGENYINDENTVMVHIRRLREKIEKDPSNPSYIQTIWGIGYKLVEE 233 >UniRef50_Q03GZ5 DNA-binding response regulator, OmpR family (Rec-wHTH domains) n=1 Tax=Pediococcus pentosaceus ATCC 25745 RepID=Q03GZ5_PEDPA Length = 234 Score = 328 bits (842), Expect = 1e-88, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 125/239 (52%), Gaps = 8/239 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ V+D+ + +LI L + + QV G A E + + D V++D+MLP DG+ Sbjct: 3 KTILVVDDEPAIVTLITYNLEQANYQVVSVDNGLDAVEIVQKGLVDFVIMDLMLPQLDGI 62 Query: 62 TICRDLRA-KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + +R PI++LT+ S ++ IL LE+GA DYI K P LL+R+++ LR+ + Sbjct: 63 EATKQIRKFDEQIPIIMLTAKTSQVDKILGLELGADDYITKPFSPQELLSRIKVILRRTD 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 +A + L + ID VV N +I L+ +F+LL L +A Q+ Sbjct: 123 RAINLAEIDP-------TLQAENIAIDFKRMVVKKNNEKIQLTPNEFKLLRYLYKNANQV 175 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 + RD +L+ + G Y G R VD+ IS LR KL ++ P IKT+R GY F + Sbjct: 176 LSRDQILEKVWGYEYGGQTRIVDIHISHLRDKLENDPKHPQLIKTIRGFGYEFVSKKGD 234 >UniRef50_C0QG14 Response regulator, CheY-like receiver domain protein n=4 Tax=Bacteria RepID=C0QG14_DESAH Length = 247 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 123/235 (52%), Gaps = 4/235 (1%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ V+DD ++ L+ YL V G + E + V+LD+M+P DG + Sbjct: 13 ILIVDDDKKLCRLVTDYLTPMGYDVASAHDGIKGLEILQSGCFHAVILDVMMPKMDGFEM 72 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 + LR + P+++LT++ + + I+ LEMGA DY+ KT LLARLR R++ Sbjct: 73 LKQLRKQSDIPVLMLTAMGEETDRIVGLEMGADDYLPKTFSSRELLARLRAVTRRHR--- 129 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 L+ S L G L I R L+ ++L+ +++LL LA +++ R Sbjct: 130 LSMDRTVKSQVKDNTLTAGELEIHLKARTAYLSGKPLNLTPLEYDLLLTLAKFPARVLSR 189 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF-APHA 237 D LL + G SYD DRSVDV IS LR+KL ++ P I+TVR GY+F P A Sbjct: 190 DQLLDAVAGRSYDVFDRSVDVHISSLRRKLGEDPRNPRFIQTVRTVGYMFNDPDA 244 >UniRef50_Q38YC7 Two-component system, response regulator (Possibly involved in phosphate regulation) n=12 Tax=Lactobacillales RepID=Q38YC7_LACSS Length = 237 Score = 327 bits (841), Expect = 1e-88, Method: Composition-based stats. Identities = 70/240 (29%), Positives = 124/240 (51%), Gaps = 6/240 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M TI+ V+D+ + +L+ L + +V G QA L++ D ++LD+MLP DG Sbjct: 1 MKTILVVDDEPAILTLLRYNLEQEHFKVMTATDGAQALTMALQQKFDFIILDLMLPKLDG 60 Query: 61 MTICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + + + +R PI++LT+ D++ + I+ LE+GA DY+ K P ++AR+R R+ Sbjct: 61 IAVTKKIREAKLKTPIMILTAKDNETDKIVGLEVGADDYVTKPFSPREIIARIRAIERRT 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 T+ +++ + + G L++D + + ++ L+ +FELL + Sbjct: 121 -----TQPIEQPVEQASETIVVGDLSVDETEVIAKKGDHKLHLTPKEFELLVYFMHRLNK 175 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 + R+ LL + G Y R VD+ +S LR+K+ DN P +KTVR GY A + Sbjct: 176 VQSREKLLNAVWGFDYPAETRMVDIQVSHLREKIEDNPRHPVYLKTVRGFGYQLEDPAHD 235 >UniRef50_C0Z621 Two-component response regulator n=5 Tax=Firmicutes RepID=C0Z621_BREBN Length = 239 Score = 327 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 81/242 (33%), Positives = 123/242 (50%), Gaps = 9/242 (3%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILR-ENPDLVLLDIMLPGK 58 M I+ V+D+ E+ L+ L V+ G+ A + + E P+L+LLDIM+P Sbjct: 1 MKDHILIVDDNLEIIELLEDILENEGFSVSSAESGEDALSLLSQGERPNLILLDIMMPNM 60 Query: 59 DGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 G +C +R +W PI+ L++ ++ ++ E+GA DYI K LLAR+R HLR+ Sbjct: 61 SGYELCSQIRREWDLPILFLSAKGKAVDKVVGFEIGADDYITKPFDTEELLARIRAHLRR 120 Query: 119 NEQ---ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELAT 175 E+ T + +ET+ +P L F L I V + N +I LST +F+LL LA Sbjct: 121 YERIRKHTEEQPEKETASSPITVLKFKDLEIHKETYSVYVCNQKIELSTKEFQLLTFLAE 180 Query: 176 HAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 +AG + R+ + + G Y G +V V I LR+KL E IKT GY+F Sbjct: 181 NAGIVFTREQIYDRVWGYGY-GSLNTVTVHIKNLREKLE---TERQFIKTQWGTGYVFIG 236 Query: 236 HA 237 Sbjct: 237 EK 238 >UniRef50_D1C683 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C683_SPHTD Length = 231 Score = 327 bits (840), Expect = 2e-88, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 114/237 (48%), Gaps = 11/237 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 T++ V+D+ ++ +L+ +L V G A T+ E D VLLD+M+PG G Sbjct: 5 TTVLIVDDEEDIVALMRDFLEAEGYAVLAAYDGPTALRTLEHEPVDCVLLDVMMPGPSGY 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R +R P++ LT+ D + I L +GA D+I+K+ P ++AR++ LR+ + Sbjct: 65 DVLRRIRENRDVPVLFLTARQEDHDKIRGLGLGADDFIVKSATPGEVVARIKAVLRRYRR 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 P L FG L ID V + + L+ +FELL A H Q+ Sbjct: 125 ---------GEPAPRAVLDFGRLVIDVQAHEVRVDGKPVQLTAREFELLQLFAEHPRQVF 175 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 R+ L + L G G +V V I RLR+K+ ++ A P I TV GY F A Sbjct: 176 TREQLFQRLWGE--FGDRHTVTVHIGRLREKIEEDPANPRYIVTVWGVGYRFDGEAR 230 >UniRef50_C9L5Y5 Regulatory protein VanR n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L5Y5_RUMHA Length = 299 Score = 327 bits (839), Expect = 2e-88, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 116/234 (49%), Gaps = 8/234 (3%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 M I+ V+D+ E+ L+ YL D V ++A + +E DL LLDIM+P Sbjct: 69 MKEKILIVDDETEIADLVELYLQNEDFLVYKFYDAEEAWNFMEKEELDLALLDIMMPKIS 128 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G+ +C+ +R +++ PI++LT+ ++++ I L +GA DYI K P ++AR++ LR+ Sbjct: 129 GLELCKKIRERYNYPIIMLTAKGAEIDKIQGLTLGADDYITKPFQPLEVVARVKAQLRRY 188 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 ++ + ++ + L L ++ L +SL+ +F +L L G Sbjct: 189 KRYNMG------TVKAEEILEHKGLILNKKTHECFLNERLLSLTPTEFSILAILCEQKGN 242 Query: 180 IMDRDALLKNLRGVSYDG-LDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 ++ + L + Y + ++ V I LR+K+ D+ P IKTV GY Sbjct: 243 VVSAEELFHQIWKDEYYSKSNNTITVHIRHLREKMEDSFENPKYIKTVWGCGYK 296 >UniRef50_B8CXQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8CXQ9_HALOH Length = 227 Score = 326 bits (838), Expect = 3e-88, Method: Composition-based stats. Identities = 70/235 (29%), Positives = 116/235 (49%), Gaps = 10/235 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+D+ ++ ++ A+L KHD + + G +A + NPDL++LD+MLP G Sbjct: 3 PKILVVDDEKKIRKVLKAFLEKHDFSIEMASDGKEALSKVNEFNPDLIILDLMLPEISGE 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+ +R PI++LT+ ++ + + GA DY++K LLAR++ LR++ Q Sbjct: 63 EVCQKIRQDKQTPILMLTAKGTEEDKVNGFAYGADDYLVKPFSLRELLARIKAILRRSNQ 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + G L I P V + + L+ +F +L L + GQ+ Sbjct: 123 KAEKAEIF--------VYQDGRLKIHPNRMKVLVNGRDADLTRTEFNILVTLIRNPGQVF 174 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R+ L K + G+ Y G DR++D I +RKKL N + I TV GY F Sbjct: 175 TREQLAKKVMGLEYKGYDRTIDAHIKNIRKKL--NLEKNQLIITVYGVGYKFEGD 227 >UniRef50_C9KN64 DNA-binding response regulator VicR n=2 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN64_9FIRM Length = 233 Score = 325 bits (836), Expect = 5e-88, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 121/234 (51%), Gaps = 6/234 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDD ++ + YL + +V G ++ DL+LLDIMLPG DG Sbjct: 1 MKKILIVEDDDKIAEIEQDYLLANGFEVERAADGRSGLAMARQDQYDLILLDIMLPGLDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR+LR P++++T+ +++ + L +GA DYI+K P L+AR+R H+ + E Sbjct: 61 FAVCRELRRYKEVPVLMVTARQEEVDVLRGLGVGADDYIMKPFNPNELVARVRSHIARYE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + ++ + G L I V L E+ + +FELL LA H + Sbjct: 121 RILASVKPEQ------HVVKSGALEIQLDAYRVFLDKKEVPFTRREFELLAFLAEHPNIV 174 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+AL + + G G +V V I+R+R+K+ ++ A P ++T+R GY F Sbjct: 175 FSREALFERVWGAEALGDSATVMVHINRIREKIEEDPAHPRYLETIRGAGYRFR 228 >UniRef50_C6C1C7 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrio RepID=C6C1C7_DESAD Length = 232 Score = 325 bits (836), Expect = 6e-88, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 129/233 (55%), Gaps = 7/233 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+DDA++ +L+ YL + +V+ P G+ E + +P +V+LDIM+PGKDG+ + Sbjct: 7 VLIVDDDAKLRALLTQYLEGYGYEVSTLPSGEGIIEEVKTSSPAIVILDIMMPGKDGLEV 66 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 RDLR + P+++LT+ D + I+ LE+GA DYI K P LLAR++ LR+ + Sbjct: 67 LRDLRPHSNVPVIMLTAKGEDTDRIVGLELGADDYISKPFNPRELLARIKAVLRRAKG-- 124 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 E + ++ + + ++ + + + LS+ +F+LL L + G+ M R Sbjct: 125 -----PENNNPNSGQINVAGVVLHVAHQKLEIEGDSLELSSTEFKLLKALMDNPGRPMTR 179 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 D L+ ++ G ++ DRS+DV IS+LR RIKTV GY+F Sbjct: 180 DDLMTSVWGKDFNAFDRSIDVHISKLRALFKPYPDHESRIKTVWGTGYMFVSE 232 >UniRef50_A3I5H1 DNA-binding response regulator n=2 Tax=Bacillaceae RepID=A3I5H1_9BACI Length = 235 Score = 325 bits (836), Expect = 6e-88, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 120/240 (50%), Gaps = 8/240 (3%) Query: 1 MNTI--VFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGK 58 M I + VED+ ++ ++I YL+ H + G +A + PD V+LD+ LP Sbjct: 1 MKNINVLIVEDENDIANIIKDYLSVHQFDSHIVRTGHEAILYLQESAPDFVILDLSLPDC 60 Query: 59 DGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 DG+ ICR +R + I++L++ SD + +L L GA DY+ K + L+AR+ HLR+ Sbjct: 61 DGIEICRKIREHSNVAILILSARGSDTDKVLGLGFGADDYMTKPFSLSELVARINAHLRR 120 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 ++ +Q LH + I+ + N I LS +FELL+ LA + Sbjct: 121 QDRWLQDHDVQ------KDVLHIDNIIINKQEYLFLRDNKPIPLSAKEFELLFFLAKNRN 174 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 Q+ + LL + G G + ++ V I R+R+K+ N + P ++TV GY F+ Sbjct: 175 QVFSKSQLLDAVWGYDTYGDENTITVYIRRIREKIEINPSHPVYLQTVWGVGYKFSTSNH 234 >UniRef50_C6PCZ0 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridia RepID=C6PCZ0_CLOTS Length = 231 Score = 325 bits (836), Expect = 6e-88, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 6/235 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M+ I+ ++D+ E+ L+ L + V G + E E PDL++LDIM+P DG Sbjct: 1 MSKILIIDDEKEIADLLKDSLERKGNTVLTAYNGKEGIEKAK-EMPDLIVLDIMMPDIDG 59 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR +R PIV L++ S+M+ I +G DY++K LLAR+ HLR+ + Sbjct: 60 YEVCRKIRDTVICPIVFLSAKQSEMDRIKGFALGGDDYVVKPFSLKELLARIDAHLRREK 119 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 +A + L+F +TID +R V + I L+ +F++L L+ H GQ+ Sbjct: 120 RA-----ILLNEEGKRALLNFKNITIDLKSREVMVKGNPIGLTKKEFDVLELLSLHPGQV 174 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 ++ + + + G +G +V I +R K+ + + IKTV GY + Sbjct: 175 FSKEQIYEKVWGFDAEGDTTTVTEHIKNIRAKIENLDPDTEYIKTVWGIGYKWEK 229 >UniRef50_Q8DLA7 Two-component response regulator n=20 Tax=Bacteria RepID=Q8DLA7_THEEB Length = 256 Score = 325 bits (835), Expect = 6e-88, Method: Composition-based stats. Identities = 68/243 (27%), Positives = 116/243 (47%), Gaps = 20/243 (8%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETI----------LRENPDLVLLD 52 I+ +ED+ + + L + V G +A I + L++LD Sbjct: 23 NILVIEDEDLIRETVVLALQEEGYHTLVASDGYEALNLIHTYLLRETSPEQGEVCLIILD 82 Query: 53 IMLPGKDGMTICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLAR 111 +MLPG +G+ +CR +R + + PI+++++ S+++ ++ LE+GA DY+ K +LAR Sbjct: 83 VMLPGINGLDLCRLIRRQGCTVPILMISAKGSEIDRVVGLEIGADDYLAKPFGMREMLAR 142 Query: 112 LRLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLW 171 R LR+ T L F L + P TL E++LS +++LL Sbjct: 143 CRALLRRTRIQQATLPP---------VLRFRDLCLYPQECRATLRGEELNLSPKEYKLLE 193 Query: 172 ELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 H ++ R+ LL + G + G ++VDV I LR+K+ + + P I TVR GY Sbjct: 194 LFMRHPRRVWPREQLLDQVWGPDFVGDSKTVDVHIRWLREKIETDPSHPQYILTVRGFGY 253 Query: 232 LFA 234 F Sbjct: 254 RFG 256 >UniRef50_B0TE19 Transcriptional regulator, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TE19_HELMI Length = 234 Score = 325 bits (835), Expect = 7e-88, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 3/234 (1%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VED+ +V L+A L QV + G A ++I E +L +LDIMLP DG Sbjct: 1 MRKILIVEDEIDVAKLVADQLKSEGFQVLMAHDGKSAIDSIDVEEFNLFILDIMLPDMDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + + +R K S P+++LT+ D+DM+ ++ +GA DYI+K L AR++ LR+ E Sbjct: 61 SEVLQYIRRKTSKPVIMLTAKDNDMDKVVNFTLGADDYIVKPFSLIELTARVKAVLRRTE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T + E + LH G+L I+ V + ISL +F LL LA ++ Sbjct: 121 G---THHITENQVGKETILHCGSLEINCDTTEVKVKGNVISLKAKEFTLLKYLAERPNRV 177 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + + +++ G + D +V V ISRLR K+ ++ A P R++TVR GY Sbjct: 178 VTIAQIYESVWGKEFIHDDNTVMVHISRLRNKIEEDPANPQRLQTVRGLGYRLV 231 >UniRef50_A1SN97 Response regulator receiver n=41 Tax=Bacteria RepID=A1SN97_NOCSJ Length = 297 Score = 325 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 76/230 (33%), Positives = 123/230 (53%), Gaps = 3/230 (1%) Query: 5 VFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTIC 64 + VED+ E+ +++ +YL + +V + G +A + +PD+V+LD+ LPG DG+ +C Sbjct: 67 MVVEDEVELAAVVGSYLERAGYEVALAHDGLRAVDLAREVDPDVVILDLGLPGIDGIEVC 126 Query: 65 RDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQATL 124 R LR +V+LT+ +++ ++ L +GA DY+ K P LLARL+ LR+ Sbjct: 127 RRLRTFSDCYVVMLTARSDEVDMLIGLSVGADDYMTKPFSPRELLARLQAILRR---PRP 183 Query: 125 TKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDRD 184 G + T L FG L+ID R V L + + L+ +F+LL LA + R Sbjct: 184 KTGQRADVATAGTILTFGALSIDVEAREVWLRDELVPLTRTEFDLLATLAERPRLVFSRR 243 Query: 185 ALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 L+ + G + G + VDV I LR+KL D+A+ ++TVR GY Sbjct: 244 QLIDRVWGEDWVGDEHLVDVHIGHLRRKLDDDASRGQYLRTVRGVGYRMG 293 >UniRef50_P51358 Probable transcriptional regulator ycf27 n=96 Tax=cellular organisms RepID=YCF27_PORPU Length = 243 Score = 325 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 121/233 (51%), Gaps = 7/233 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+A + ++ L +V G++A +E P LV+LD+M+P DG Sbjct: 7 KILVVDDEASIRRILETRLTIIGYEVITASNGEEALIIFRKEYPSLVVLDVMMPKLDGYG 66 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C++LR + PI++LT+L + I LE+GA DY++K P L AR+R LR+ ++ Sbjct: 67 VCQELRKESDVPIIMLTALGEVCDRITGLEIGADDYVVKPFSPKELEARIRSVLRRADKI 126 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T G+ + G L ID R V N + L+ +F LL L + AG+ Sbjct: 127 TTNLGVP-----NSGIISIGFLKIDTNKRQVYKNNERVRLTGMEFSLLELLVSKAGEPFS 181 Query: 183 RDALLKNLRGV--SYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R ++L+ + G R VDV ISRLR KL D+ + P I T R GYLF Sbjct: 182 RASILQEVWGYTPERHVDTRVVDVHISRLRAKLEDDPSNPDLILTARGTGYLF 234 >UniRef50_A0PXH1 Transcriptional regulatory protein n=11 Tax=Clostridium RepID=A0PXH1_CLONN Length = 232 Score = 325 bits (835), Expect = 8e-88, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 120/236 (50%), Gaps = 5/236 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ +D+ E+ L++ YL K + G +A + I D+ ++DIM+P DG Sbjct: 1 MARVLIADDEEEIIELLSLYLEKDGHCIYSAVNGLEALQIINNNEVDIAIIDIMMPQIDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + R +R + P+++L++ + IL L++GA DYI K +LAR++ LR+ Sbjct: 61 YHLVRKIRENYDMPVIMLSAKSEYCDKILGLDLGADDYITKPFNAMEVLARVKAQLRRYN 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + E + L G L ++ + N E+ L++ ++++L+ L + G++ Sbjct: 121 K-----SMSEKEKCEKQYLECGKLRLNINTCTLYKENIEVYLTSTEYKILFYLLENKGKV 175 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 + + + + + G D ++ V IS LR K+ D++ P+ IKT+R GY + Sbjct: 176 FTKKQIFEYVWEEPFYGDDNAIMVHISNLRDKIEDDSKNPHYIKTIRGLGYKLDSN 231 >UniRef50_Q0AWC5 Response regulator receiver protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWC5_SYNWW Length = 227 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 120/233 (51%), Gaps = 11/233 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VED+ ++ +++ +L + +V + G +A + PDL++LD+MLPG G + Sbjct: 5 ILLVEDEKKIRDMLSKHLRQEGFRVALAADGLEALQIWQDIKPDLIVLDLMLPGLSGWEV 64 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 + +R K + PI++LT+ +++ +L LE+GA DYI K P L R++ LR++ Sbjct: 65 MKKIRQKNNTPIIVLTARVDEVDKLLGLELGADDYITKPFSPRELALRIKAVLRRSRPHE 124 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + L+I+P + +T ++L+ +F++L LA + GQ+ R Sbjct: 125 QVTN-----------VSISNLSINPERLEALIGDTLLALTPTEFKILLLLAENPGQVFSR 173 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 +L+ + G Y+G +R++D IS LR K+ IKTV GY Sbjct: 174 LHILERVFGDIYEGYERTIDTHISNLRHKIEATGKSEISIKTVYGIGYKLVAE 226 >UniRef50_B8G7R1 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G7R1_CHLAD Length = 234 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 119/233 (51%), Gaps = 11/233 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ V+D+A + ++ AYL +V G + + L E PDL++LD+MLPG DGM Sbjct: 3 PTILVVDDEASIRNVAKAYLEHAGYRVLCATTGPEGLQMALDEEPDLIVLDLMLPGMDGM 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 I LR K I++LT+ +++ + L +GA DY+ K P L+AR+ LR+ Sbjct: 63 EITARLREKSDVFILMLTARSDEIDRVAGLRVGADDYLTKPFSPRELVARVEAILRRRRG 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + F + IDP R A + L+ +F+LL LA + +++ Sbjct: 123 ----------KPVKSSVMRFTHVEIDPDAREARAAGQLLELTPTEFDLLIALARNHNRVL 172 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ L++ + G + G DR VDV +S++R+K+ E I+T R GY F Sbjct: 173 SREDLIEKVWGADFYGTDRVVDVYVSQVRRKIEALTGE-NLIRTARGVGYRFV 224 >UniRef50_Q2SL72 Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=56 Tax=Proteobacteria RepID=Q2SL72_HAHCH Length = 264 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 105/238 (44%), Positives = 149/238 (62%), Gaps = 3/238 (1%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ VEDD + L YL + + V+VEP G +A E I E PDLV+LD+MLPG+DG++ Sbjct: 27 RILIVEDDERLADLTKEYLESNGLMVSVEPNGSKAVERIQNEQPDLVVLDLMLPGEDGLS 86 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 ICR +R ++GPI++LT+ D++ +L LEMGA DY+ K P VLLAR+R LR+ ++ Sbjct: 87 ICRKVRPSYNGPILMLTARTDDLDQVLGLEMGADDYMCKPVRPRVLLARIRALLRRVKEQ 146 Query: 123 TLTKGLQETSLTPYK---ALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + L F L ID R L + I L++A+F+LLW LA+ AG+ Sbjct: 147 GEAAAESPIAEQSGDGPVRLVFNNLVIDRSMREAWLEDQSIDLTSAEFDLLWLLASSAGR 206 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 ++ R+ + LRG+ YDG DRS+DV +SR+R K+ D+ P RIKTVR+KGYLF A Sbjct: 207 VLSREEIFTALRGIEYDGQDRSIDVRVSRIRPKIGDDPVHPRRIKTVRSKGYLFVKEA 264 >UniRef50_A6TT79 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiales RepID=A6TT79_ALKMQ Length = 232 Score = 324 bits (833), Expect = 1e-87, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 114/234 (48%), Gaps = 10/234 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ +ED+ + +I AYL + V G +A +++ D V+LD+MLP G Sbjct: 6 KRVLIIEDEKNIADVIKAYLQNEKYEAIVTHNGKEAISIFQQQSFDFVILDLMLPDLSGE 65 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 IC+ +R + PI++LT+ + + I L++GA DY+ K P L+AR+R +R+ Sbjct: 66 EICKRIRLQSQVPILMLTAKVEESDRIYGLDIGADDYMTKPFSPKELVARVRAIMRRTNN 125 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 L L E L+ G L +D + + + L+ +F+LL ++G++ Sbjct: 126 EGLKAHLIE--------LNGGDLKVDLRDMETWKKDELVELTATEFKLLSIFIQNSGKVF 177 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 RD L+ + G Y G DR++DV I LR K+ I TV GY F Sbjct: 178 SRDELVVKVLGYDYVGYDRTIDVHIKNLRHKIE--CEYYKYIVTVYGVGYRFVK 229 >UniRef50_D1C280 Two component transcriptional regulator, winged helix family n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C280_SPHTD Length = 240 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 85/237 (35%), Positives = 129/237 (54%), Gaps = 7/237 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETIL---RENPDLVLLDIMLPG 57 M IV VED+ E+ +L+ L + +V V G A E + + PDL++LD+MLP Sbjct: 1 MADIVVVEDERELATLVERALREEGHRVEVIRDGAAALERLTGPGQPEPDLIVLDLMLPN 60 Query: 58 KDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 DG+ ICR +R PI++LT+ ++++ +L LE+GA DY+ K L AR+ LR Sbjct: 61 VDGLEICRRVRQSKITPILMLTARSTELDRVLGLELGADDYLTKPFSLRELQARVSAILR 120 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + E ++ + + G LTIDP++R VT + L+ +F+LL LA + Sbjct: 121 RVEMMRALSRTEDGT----TRIDHGDLTIDPLSREVTSRGQPVHLTAKEFDLLHLLAANP 176 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 G++ RD LL + G Y G+DR+VD I RLRKKL + RI T+ GY + Sbjct: 177 GRVFSRDYLLHRVWGEDYVGVDRTVDTHILRLRKKLGGPGSPAERIVTLWGVGYKYE 233 >UniRef50_D2SFJ3 Two component transcriptional regulator, winged helix family n=6 Tax=Actinomycetales RepID=D2SFJ3_9ACTO Length = 238 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 119/233 (51%), Gaps = 12/233 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+DDA + ++ L + + G++A + PD+VLLD+MLPG++G+ Sbjct: 17 RVLVVDDDAALAEMLGIVLRREGYEPAFVSDGNRAVGAFQQTRPDIVLLDLMLPGRNGLQ 76 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 IC+D+R + + PIV+LT+ ++ + LE GA DY+ K P L+AR+R LR+ Sbjct: 77 ICQDIRTQSTVPIVMLTAKGDTIDVVQGLEAGADDYVTKPFKPVELVARVRAQLRR---- 132 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + L G + ID VT I+L+ +F+LL LA Q+ Sbjct: 133 --------GETGQAENLSIGDVQIDVPAHQVTRDGVPIALTPLEFDLLVALARKPRQVFT 184 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R+ LL+ + G + R V+V + RLR K+ + +P + TVR GY P Sbjct: 185 RELLLEQVWGYRHAADTRLVNVHVQRLRAKIERDPEKPEIVLTVRGVGYKAGP 237 >UniRef50_B8FI17 Two component transcriptional regulator, winged helix family n=6 Tax=Proteobacteria RepID=B8FI17_DESAA Length = 229 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 77/236 (32%), Positives = 128/236 (54%), Gaps = 13/236 (5%) Query: 1 MNT---IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPG 57 M I+ VED+ ++ +AAYL + RGD+A + +E PDLVLLDIMLPG Sbjct: 1 MTKQAFILIVEDEPKIAEGLAAYLENAGFRTHCLDRGDRAARFVRQEAPDLVLLDIMLPG 60 Query: 58 KDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 KDGM +C++LR+ PI++LT+ +++ +L LE+GA DYI K P ++AR++ LR Sbjct: 61 KDGMEVCKELRSFSQIPIIMLTARVEEIDRLLGLELGADDYICKPFSPREVVARVKAVLR 120 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 ++ T K + G + +D +R V++ + L+ ++F +L + + Sbjct: 121 RS----------NTPQEESKRITEGPIILDEDSREVSVGGNSLKLTPSEFMILKVMMSRP 170 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ R+ LL G ++G DR++D I LRKK+ + I ++ GY F Sbjct: 171 NRVFSRNELLDLAIGSQFEGYDRTIDSHIRNLRKKIKKALPDLECIHSIYGAGYKF 226 >UniRef50_A6LVA4 Two component transcriptional regulator, winged helix family n=7 Tax=Firmicutes RepID=A6LVA4_CLOB8 Length = 234 Score = 324 bits (832), Expect = 2e-87, Method: Composition-based stats. Identities = 59/235 (25%), Positives = 105/235 (44%), Gaps = 4/235 (1%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ VED+ E+ I YL V G + E I + L ++DIM+P DG+ Sbjct: 4 YNVLIVEDEKEICDGIEIYLKNQGYNVYRASNGIEGLEIIENQTLHLAIVDIMMPKMDGI 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 T+ LR + P+++LT+ +M+ IL L +GA DY+ K P L+AR+ LR+ + Sbjct: 64 TMVMKLRENYDFPVIMLTAKSEEMDKILGLNIGADDYVTKPFNPMELIARVNSQLRRYSK 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 E G L ++ + V L I ++ +F++L L + G++ Sbjct: 124 YLSVVSGAE---QKSNIFSIGGLELNNDTKEVILDGELIKVTPIEFKILQLLMKNPGRVF 180 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 + + + + D +V V + +R+K+ + P +K V GY Sbjct: 181 SAEEIYEKVWNEEAINTD-TVMVHVRNIREKIEIDTKNPKYLKVVWGVGYKIEKQ 234 >UniRef50_Q894P5 Transcriptional regulatory protein n=4 Tax=Clostridiales RepID=Q894P5_CLOTE Length = 231 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDD + L YL D +V + G I DL++LD+MLP DG Sbjct: 1 MKKILIVEDDLSIAELQKDYLEISDFEVKICTDGVSGLNEIKENKYDLIILDVMLPKMDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 I R + P++++++ +++ I L +GA DYI K P L+AR++ H+ Sbjct: 61 FDILRIIHDTKDVPVLMVSAKKEEIDKIKGLSLGADDYITKPFSPGELVARVKSHI---- 116 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 Q + + + L I+ +R V + + E++L+ +F+LL +A + ++ Sbjct: 117 QNYERLKNKFSDKLNNNVISIRGLEINKDSRQVIINDKEVNLAQKEFDLLLHMAQYPNRV 176 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 +D L +++ G+ G +V V I R+R+K+ N ++P I+TV GY Sbjct: 177 FGKDELFESIWGLDSIGDSATVTVHIRRIREKIEFNPSKPQYIETVWGVGYR 228 >UniRef50_C7ILM1 Two component transcriptional regulator, winged helix family n=3 Tax=Firmicutes RepID=C7ILM1_9CLOT Length = 232 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 121/237 (51%), Gaps = 6/237 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ ++D+ + L L + QV G + + PDLVLLD+MLP G Sbjct: 1 MKKILVIDDELAIRDLTELVLKREGFQVKTAENGRRGIIELNSFRPDLVLLDLMLPDCSG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+++ + + P++++++ D ++ +L LE+GA DYI K L+AR+++ LR+ E Sbjct: 61 YDLCKEIVKQSNIPVIMVSAKDETIDKVLGLELGAEDYITKPFDNRELIARIKVVLRRYE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 E L G L I+P +VV T+I L+ ++ +L L +I Sbjct: 121 H------NDEAKYEYTTKLVCGELEINPDTKVVQKNGTQILLTAKEYGILETLFKRPKKI 174 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 RD LL+ + G Y G RSVD+ I RLRKK+ +++ P +KT+ GY + Sbjct: 175 FTRDELLEIVWGYDYSGDSRSVDMTIMRLRKKIEEDSETPKYVKTIYGFGYQLGGDS 231 >UniRef50_B8DS40 Two component transcriptional regulator, winged helix family n=29 Tax=Proteobacteria RepID=B8DS40_DESVM Length = 275 Score = 323 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 87/236 (36%), Positives = 129/236 (54%), Gaps = 2/236 (0%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+DD E+ +L+ YL KH + G + + DLV+LD+MLPG DG+T Sbjct: 6 HILVVDDDPEIRALLTGYLDKHGFRAESAADGSEMFRMLEVGRYDLVVLDVMLPGDDGLT 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR LRA+ P+++LT+LD D + I+ LE+GA DY+ K P L+AR+R LR+ Sbjct: 66 LCRKLRARSELPVIMLTALDDDTDRIIGLELGADDYVAKPFNPRELVARIRTVLRRARAL 125 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPI-NRVVTLANTEISLSTADFELLWELATHAGQIM 181 E + + F T+D + +V ++LS A++ LL + ++M Sbjct: 126 PENIAKAEPEAM-SRTIRFAGWTLDTVPRHLVAPDGVVVNLSGAEYRLLRFFLKYPNRVM 184 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 RD LL +G + + DRS+DV +SRLR +L DN EP IKTVR GY A Sbjct: 185 SRDQLLDLTQGRAAEAFDRSIDVLVSRLRTRLRDNGREPQIIKTVRGDGYYLATDV 240 >UniRef50_A9AYM0 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AYM0_HERA2 Length = 231 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 113/233 (48%), Gaps = 10/233 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ ++D+A++ L+ +YL V G + PDL+LLDIM+P G+ Sbjct: 3 QTILVIDDEAKLRELLRSYLQNEGFNVFEAKNGREGLYVARDVKPDLILLDIMMPELGGL 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 R + PI+LLT+ D + I+ LE+GA DYI K ++AR+R LR++ + Sbjct: 63 DFMRAWNKEAETPIILLTAKIEDHDKIIGLELGADDYITKPFNAREVMARVRAVLRRSYK 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 A L G + ++ + + + L+ ++FE+L L G + Sbjct: 123 AQPQA----------DVLRIGEIVLERSACTLMVGEQTVDLTPSEFEILATLMASPGHVF 172 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R LL G +Y+G +R++DV I LR K+ + P I+TV GY FA Sbjct: 173 SRLDLLDRTSGQAYEGYERTIDVHIRNLRSKIEPDPKNPRYIETVYGVGYRFA 225 >UniRef50_Q06239 Regulatory protein vanR n=26 Tax=Firmicutes RepID=VANR_ENTFC Length = 231 Score = 322 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 7/231 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+ E+ L+ YL + V +A E I + DL +LDIMLPG G+T Sbjct: 4 KILIVDDEHEIADLVELYLKNENYTVFKYYTAKEALECIDKSEIDLAILDIMLPGTSGLT 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 IC+ +R K + PI++LT D++++ I L +GA DYI K P L+AR++ LR+ ++ Sbjct: 64 ICQKIRDKHTYPIIMLTGKDTEVDKITGLTIGADDYITKPFRPLELIARVKAQLRRYKKF 123 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + K E + L I+ L ++SL+ +F +L L + G ++ Sbjct: 124 SGVKEQNE------NVIVHSGLVINVNTHECYLNEKQLSLTPTEFSILRILCENKGNVVS 177 Query: 183 RDALLKNLRGVSYDG-LDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + L + G Y + ++ V I LR+K+ D P IKTV GY Sbjct: 178 SELLFHEIWGDEYFSKSNNTITVHIRHLREKMNDTIDNPKYIKTVWGVGYK 228 >UniRef50_Q26IA7 Transcriptional regulatory protein n=3 Tax=Bacteroidetes RepID=Q26IA7_9BACT Length = 238 Score = 322 bits (827), Expect = 6e-87, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 124/235 (52%), Gaps = 5/235 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N I+ VEDD E+ L+ ++ + +V G A E ++ DL+LLD+ +P +G+ Sbjct: 8 NQILIVEDDLEIVDLLEIHMKDLNAEVESVNDGLSALEKAQHKDFDLILLDLSIPKLNGV 67 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR+LR + PI+++T+ +++ +L LE+GA DYI K L AR + +R+++ Sbjct: 68 EVCRELRKTKNTPIIMVTAKTEEIDKVLGLEIGADDYITKPFSIRELKARAKAVMRRSDA 127 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 A +T+ L FG L ++ R VTL +I LS +F+LL LA + G+ Sbjct: 128 ANQQTNDSKTAE-----LDFGDLKVNVEMRRVTLEGKKIDLSPKEFDLLILLANYPGRSY 182 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R LL + G ++ G + +V+ I+RLR K+ + P I T GY F Sbjct: 183 SRSELLDVIWGYNFSGYEHTVNSHINRLRAKIEPDMGNPIYILTTWGIGYRFNED 237 >UniRef50_A5WHF9 Two component transcriptional regulator, winged helix family n=3 Tax=Psychrobacter RepID=A5WHF9_PSYWF Length = 240 Score = 322 bits (826), Expect = 7e-87, Method: Composition-based stats. Identities = 91/245 (37%), Positives = 136/245 (55%), Gaps = 16/245 (6%) Query: 1 MNT-IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETI--LRENPDLVLLDIMLPG 57 M+ I+ +EDD ++ LI+ YLA + +V P G + + + DL++LD+MLP Sbjct: 1 MSKQILLIEDDPDLAELISDYLAMNYYEVHHAPTGQEGLDILDAKERAIDLIILDLMLPD 60 Query: 58 KDGMTICRDLR-----AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARL 112 DGM +C+ +R PIV+LT+ + +L LEMGA DYI K P LLAR+ Sbjct: 61 MDGMQVCQKIRGGKNSQTNKVPIVMLTAKGDTTDRVLGLEMGADDYISKPFEPRELLARI 120 Query: 113 RLHLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWE 172 R LR++EQ +L FG L++ P + VT+ + + L+T F+LL Sbjct: 121 RAVLRRHEQPNQADSQ-------SDSLTFGRLSVFPDSHEVTIDDKPVRLTTHQFQLLHY 173 Query: 173 LATHAGQIMDRDALLKNLRGVS-YDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 ATHAG++++R+ L + + D +DR++DV ISRLR + DN +P RI TVR GY Sbjct: 174 FATHAGKVLNREQLWQAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGY 233 Query: 232 LFAPH 236 FA Sbjct: 234 QFATD 238 >UniRef50_C0GHG5 Two component transcriptional regulator, winged helix family n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GHG5_9FIRM Length = 237 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 119/233 (51%), Gaps = 13/233 (5%) Query: 5 VFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTIC 64 + VEDD+++ L+ L D V V G + E + + +L++LD+MLP DG IC Sbjct: 9 LVVEDDSDISELVRIVLRAEDFAVDVAHDGQKGLEMAITKPYNLIILDLMLPTLDGWEIC 68 Query: 65 RDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 R LR A S PI++LT+ + + + +L L++GA DY+ K P LAR+ LR+ Sbjct: 69 RRLRDTAATRSTPIIMLTAKNEESDKVLGLQVGADDYLTKPFRPREFLARVHALLRRTTD 128 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 P L+F TLTI P + + + L+ +FELL LA +AG+ + Sbjct: 129 YNQ----------PDDTLYFCTLTIYPQSYQAFIEQKTVDLTPKEFELLLILARNAGRTL 178 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ LL+ + G Y G R++D I RLR+K+ ++TV GY Sbjct: 179 KREQLLEQVWGYEYPGSTRTIDEHIKRLRQKISQLEPGYTFVQTVWGVGYKLE 231 >UniRef50_Q5WKN6 Two-component response regulator n=2 Tax=Firmicutes RepID=Q5WKN6_BACSK Length = 227 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 112/234 (47%), Gaps = 11/234 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ V+DD + L+ +L V ++A E + D ++LDIM+PG++G Sbjct: 4 KTILVVDDDQSIADLLRDFLENDHFYVLTASNTEEAWEAFQQSAVDCLILDIMMPGENGF 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 CR +RAK PI+ L++ +D++ I L +G DYI+KT P ++AR++ LR++ Sbjct: 64 AFCRRIRAKSDVPILFLSARSADVDKIRGLTLGGDDYIVKTASPGEIVARVKAVLRRSA- 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 L FG LT++ R + + + L+ ++ELL H + Sbjct: 123 --------SNQPPTETILEFGHLTLNLTTRELAVDGKNVMLTPKEYELLQLFLEHPRHVF 174 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 D LL L G +V V +SRLR+K+ N +P I V GY F Sbjct: 175 SYDQLLDKLW--DGVGDKHTVRVHLSRLREKIEANPNDPQYIVNVWGIGYRFEG 226 >UniRef50_C4ZFF8 DNA-binding response regulator n=60 Tax=Bacteria RepID=C4ZFF8_EUBR3 Length = 248 Score = 322 bits (826), Expect = 8e-87, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 112/231 (48%), Gaps = 5/231 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ ++D+ ++ L+ YL + V A I + DL +LDIMLP +G + Sbjct: 21 KILIIDDEQDIADLLEVYLKNENYVVYKFYCATDAMSCIESGDIDLAILDIMLPDMNGFS 80 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C+ +R K++ PI++LT+ + + I L +GA DY+ K P ++AR++ LR+ ++ Sbjct: 81 LCQLIRKKYTYPIIMLTAKIEETDKITGLTLGADDYVTKPFRPLEVVARVKAQLRRYKKY 140 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + ++ L + L ++ L +SL+ +F +L L + AG ++ Sbjct: 141 SPGIITEKIPSE----LSYNKLCLNVQTHECLLDGELVSLTPTEFSILHVLLSSAGNVVS 196 Query: 183 RDALLKNLRGVSYDG-LDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + L + Y ++ V I LR+KL D + P IKT+ GY Sbjct: 197 IEELFHAVWKDEYYSKNSSTITVHIRHLREKLNDTSDTPQYIKTIWGVGYK 247 >UniRef50_A8VSS8 Response regulator receiver protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VSS8_9BACI Length = 229 Score = 322 bits (826), Expect = 9e-87, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 115/238 (48%), Gaps = 9/238 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M TI+ V+D+ + + YL + G++A I PDL+LLDI +PG DG Sbjct: 1 MQTIMIVDDEQGLREMTDLYLKSKGYGTILAEDGERALSLIQDTVPDLILLDIEMPGMDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + +CR++R++ S P++ L+ S M+ + E+GA DY+ K L AR++ ++R Sbjct: 61 LEVCREIRSQLSIPVIFLSVRRSTMDKVACFELGADDYMTKPFDFEELEARIKANIRMYA 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 ++G + L +G L IDP + ISL+ + +LL A H Q+ Sbjct: 121 MNPSSEGPK---------LRYGHLVIDPEACKCEVEGESISLTAKEMKLLLHFAKHPNQV 171 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 + L + + G +V V IS LR+K+ P I+TVR GY F P Sbjct: 172 WTHEQLYDRIWNLDATGYVETVKVHISHLRRKIERTPNRPEYIQTVRGFGYRFVPGKH 229 >UniRef50_A4FEZ3 Two-component response regulator n=4 Tax=Bacteria RepID=A4FEZ3_SACEN Length = 234 Score = 321 bits (825), Expect = 9e-87, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 120/233 (51%), Gaps = 10/233 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+DD V ++ YL + V + G+ A PDLV+LD+MLPG G+ Sbjct: 10 RVLVVDDDTSVRDVVRRYLQRAGYAVELAGDGETALRLHAERKPDLVVLDLMLPGVGGLE 69 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR LR + P+V+LT+L + + ++ LE GA DY++K P L+ R+ LR+ Sbjct: 70 VCRRLRERGEVPVVMLTALGEESDRVVGLEQGADDYVVKPFSPRELVLRVASILRRAR-- 127 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + L G L +D R TL E++L+ +F+LL L H G+ Sbjct: 128 -------TSQPAEGEVLTDGALRLDLDARRGTLDGGELALTGREFDLLVFLLRHPGRAFS 180 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R LL+ + G S+ G +V V + RLR+K+ + A P RI TV GY + P Sbjct: 181 RAELLEQVWGWSF-GDHSTVTVHMRRLREKVEPDPARPVRINTVWGVGYRYDP 232 >UniRef50_A0LVZ4 Two component transcriptional regulator, winged helix family n=13 Tax=Actinomycetales RepID=A0LVZ4_ACIC1 Length = 245 Score = 321 bits (825), Expect = 1e-86, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 109/234 (46%), Gaps = 9/234 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ +EDD + + + L +V P G E D+VL+D+MLP DG Sbjct: 19 PRILLIEDDDRIRASMRLALTDDGHEVIEAPSGAAGLELFGAGGADVVLVDLMLPDIDGF 78 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 CR LR PI+++T+ + + LE GA DY+ K L AR+R LR++ Sbjct: 79 ECCRRLRRSSDVPIIMVTARTDTHDVVAGLEAGADDYVTKPFEMKELSARIRALLRRSRS 138 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 A G + + L I P VV + L+ +F LL ELA+ ++ Sbjct: 139 AGGPAG---------EVIDIQDLEIRPDAGVVRRNGEALHLTRTEFRLLCELASAPDRVY 189 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R+ LL+ + G Y G R VDV + RLR K+ ++ A P + TVR GY P Sbjct: 190 SREQLLERVWGYDYFGDGRIVDVHVRRLRTKIEEDPAHPRILVTVRGLGYKIQP 243 >UniRef50_A0RCN7 Two-component response regulator n=65 Tax=Bacillus RepID=A0RCN7_BACAH Length = 247 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 65/231 (28%), Positives = 118/231 (51%), Gaps = 5/231 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N+I+ V+DD ++ + A L + +V G++A + I + L +LDIM+P DG+ Sbjct: 19 NSILIVDDDQDIVRFVNANLMQEGFKVLSAHNGEEALKIINNNSIQLAILDIMMPHMDGI 78 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +R K S PI+ L++ SD++ ++ GA DYI+K +AR++ LR+ Sbjct: 79 ELCRRIREKHSLPIMFLSAKSSDVDKVIGFSTGADDYIVKPFSTIEFIARVKAQLRRYTY 138 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 Q K + L ID ++R V L I+L+ ++++L+ +A ++ Sbjct: 139 FN-----QNAVQVIEKKISIRGLEIDEVSRTVMLYGETINLTKTEYDILYLMAAAENRVF 193 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + + +++ + +V V I+RLR K+ +N EP I+ V GY Sbjct: 194 TIEEIYESVWKERAYESNNTVMVHIARLRNKIEENPKEPKFIQNVWGVGYK 244 >UniRef50_A9KHT5 Two component transcriptional regulator, winged helix family n=12 Tax=Bacteria RepID=A9KHT5_CLOPH Length = 233 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 127/236 (53%), Gaps = 7/236 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ +D+ ++ ++AAY K D+ + G++A + NP +VLLD+M+P +DG Sbjct: 1 MQHILIADDNPDITDVLAAYAKKEDLVPVIAADGEEAIRMFRQYNPAVVLLDVMMPKEDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR +RAK P++L+T+ D I+ L++GA DYI+K P+ ++AR+R LR+ Sbjct: 61 YEVCRKIRAKSDVPVILITARGEDFEKIMGLDIGADDYIVKPFSPSEVMARIRAILRRMT 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + +E T L L I+ + + T+ISL+ + E +W LA++ ++ Sbjct: 121 K-------KENEQTSENVLSIANLEINLEEYTLHIGGTKISLTKKEIETMWTLASNPNKV 173 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 RD LL +L G Y G R+VD I RLR KL + IKT+ GY F Sbjct: 174 FTRDNLLDSLWGFDYFGDSRTVDSHIKRLRAKLDMLEHPNWSIKTIWGVGYKFEVD 229 >UniRef50_B2A8D5 Two component transcriptional regulator, winged helix family n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A8D5_NATTJ Length = 234 Score = 321 bits (824), Expect = 1e-86, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 124/234 (52%), Gaps = 8/234 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 T++ +ED+ + ++ AYL K QV G E ++NPD+V+LD+MLP G Sbjct: 8 YTVLIIEDEQGLVKVLKAYLEKEGYQVYASHDGLAGLELFKKQNPDIVVLDLMLPNMSGE 67 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 I R +R + PI++LT+ S+ I L +GA DY++K P ++ARL+ LR+ + Sbjct: 68 EIARKIRKEQETPILMLTAKGSEDEKITGLGIGADDYVVKPASPREIIARLKTILRRVGK 127 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 E + + G +TID + + + L TEISL+ +F++L LA + ++ Sbjct: 128 --------EPGRIQQEIITAGEITIDTLAKKIYLRGTEISLTQTEFDILSTLALYPKKVF 179 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R+ L + G ++G R++D I LR+K+ N +P IKTV GY F Sbjct: 180 SRENLADRIYGYLWEGDSRTIDTHIKNLRRKIEQNPKKPIFIKTVFGAGYQFGK 233 >UniRef50_A7Z5A0 YvrH n=28 Tax=Firmicutes RepID=A7Z5A0_BACA2 Length = 267 Score = 320 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 109/233 (46%), Gaps = 9/233 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDM-QVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ ++D+ E+ LI L + + +V +ENPDLV+LDIMLP +G Sbjct: 39 KVLIIDDEKEILELIKTVLIREGIDRVVTASTARDGLAQFHQENPDLVILDIMLPDGEGY 98 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 IC+ +R PI+ L++ + + I+ L +G DYI K P + R++ LR+ Sbjct: 99 DICKQIRDISHVPIIFLSAKGEETDKIVGLAIGGDDYITKPFSPKEVAYRVKAQLRRVSY 158 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 ++ + G ++ +T I L+ + L+ H +++ Sbjct: 159 LQPSQT--------GTIIKKGPFELNQQQAELTKNEAAIELTPKELMLMTYFLQHPNRVI 210 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ L + + G + G D +V V I RLR+K+ + ++P + TV+ GY F Sbjct: 211 SKETLYQAVWGEDFFGSDNTVMVHIRRLREKIENTPSKPDFLVTVKGLGYKFV 263 >UniRef50_B1YFK7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=B1YFK7_EXIS2 Length = 230 Score = 320 bits (822), Expect = 2e-86, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 122/238 (51%), Gaps = 9/238 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ ED+ + S I L + +V G +A + ++ D++LLDIM+P DG Sbjct: 1 MTKILVAEDEHAIRSFIVINLKRAGYEVIEAENGREALDYFEQQTFDILLLDIMMPEVDG 60 Query: 61 MTICRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 +C R+K I++LT+ + + ++ L +GA DYI K PA LLAR++ LR+ Sbjct: 61 FAVCEQARSKDEVVGIIMLTARTREEDKVMGLSVGADDYIAKPFSPAELLARIQSLLRRV 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 E K +E L G ID + V A ++ ++ +++LL + Q Sbjct: 121 ETLRRRKQPRE--------LVSGPFRIDLGAKRVQKAGVDVEVTPTEYDLLCHFIKNEDQ 172 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 +M RD LL + G +Y G ++VDV I RLR+K+ +N AEP I+T+ GY + Sbjct: 173 VMSRDELLDAVWGENYFGDRKTVDVNIRRLRQKIEENPAEPQFIETLWGHGYKWRNEK 230 >UniRef50_Q7NMA6 Two-component response regulator n=2 Tax=Bacteria RepID=Q7NMA6_GLOVI Length = 238 Score = 320 bits (822), Expect = 3e-86, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 117/238 (49%), Gaps = 14/238 (5%) Query: 1 MNT--IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGK 58 M I+ VEDD + I YL + G +A+ LR PDLV+LD MLPG Sbjct: 9 MPNAAILVVEDDPLILETIRRYLEHAGHRCHCAADGWEADRLALRHRPDLVVLDWMLPGV 68 Query: 59 DGMTICRDLRA-KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 DG+ +C R ++ P+++LT+ + + + AL GA DY+ K L+AR++ LR Sbjct: 69 DGLALCERWRKGEYFAPVLMLTARTEEDHRVRALAGGADDYLDKPFSAKELVARVQALLR 128 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + + + L +D R V L I L +F+LL +LA H Sbjct: 129 RAYASGYRDCSPKN-----------GLLVDRNTRQVQLHGRPIDLRAREFDLLAQLADHP 177 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 G++ RD LL+ + G ++G R++DV + +LR+KL + P + TV GY FA Sbjct: 178 GRVYSRDELLERVWGYDFEGGHRTIDVHVRKLREKLEPDPTRPVYVLTVWGVGYKFAG 235 >UniRef50_Q0TP36 DNA-binding response regulator n=142 Tax=Bacteria RepID=Q0TP36_CLOP1 Length = 223 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 122/233 (52%), Gaps = 14/233 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 T++ VED+ + L+ Y K V G++A DL +LDIM+P DG+ Sbjct: 3 KTVLIVEDEIRIRFLVRDYFKKEGFNVLEASDGEEALRIFSENIVDLAILDIMMPKLDGL 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR++R + PI+LLT+ + + +L E+GA DY+ K P VLLA+ + LR+ Sbjct: 63 AVCRNIREVSNTPIILLTAKSQEEDKLLGYELGADDYMTKPFSPKVLLAKAKALLRRT-- 120 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 +L L F LTI+ ++ V L E+ LS +++LL L+++ G + Sbjct: 121 ---------GTLNDKNILDFNGLTINKLSHEVKLNGEELLLSPKEYDLLIYLSSNEGIAL 171 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 RD +L N+ G Y G R+VD I RLR+KLLD + I TVR GY F Sbjct: 172 SRDRILDNVWGYDYFGDIRTVDTNIKRLREKLLD---KANYIATVRGSGYKFE 221 >UniRef50_A0KCT7 Two component transcriptional regulator, winged helix family n=55 Tax=cellular organisms RepID=A0KCT7_BURCH Length = 239 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 125/237 (52%), Gaps = 7/237 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VEDDA++ +++ +L +V G + + + N D ++LD+MLPG DG+ Sbjct: 5 KRILIVEDDADIADVLSLHLRDERYEVVHSADGAEGLRLLEQGNWDALILDLMLPGVDGL 64 Query: 62 TICRDLRA-KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ICR RA PI++ ++ S+++ IL LE+GA DY+ K L+AR++ LR+ + Sbjct: 65 EICRRARAMTRYTPIIITSARSSEVHRILGLELGADDYLAKPFSVLELVARVKALLRRVD 124 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 S L L IDPI R ++ + L+ +F+LL+ A H G++ Sbjct: 125 ALAR------DSRIDAGTLDVAGLAIDPIAREASVDGARLDLTPREFDLLYFFARHPGKV 178 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R LL + G ++G + +V+ I+RLR K+ + AEP RI TV +GY A Sbjct: 179 FSRMDLLNAVWGYQHEGYEHTVNTHINRLRAKIEADPAEPVRILTVWGRGYKLAAPG 235 >UniRef50_Q5WGW1 Two-component response regulator n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WGW1_BACSK Length = 228 Score = 320 bits (821), Expect = 3e-86, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 10/232 (4%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ +EDD + +++ YL + +V + G+ LVL+D+MLP DG + Sbjct: 3 ILLIEDDRSIATIVKEYLERESFKVVWQADGESGYHAFCEGAYQLVLIDLMLPKMDGFAL 62 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C +RA PI+++++ +D + + + +GA DY+ K P L AR++ +R+ E++ Sbjct: 63 CEKIRASSEVPIIVVSAKQTDFDKVQSFGLGADDYVTKPFSPLELTARVKAQIRRYERSY 122 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + L F + ID R V +ISL+ +FELL LA H G++ + Sbjct: 123 PQQ---------EDRLQFIDVEIDIKGRRVFARGEQISLTAKEFELLLFLANHPGRVFTK 173 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + L + R+V V + +R KL D P I+TV GY F Sbjct: 174 EELYAAVWNGDGF-DSRTVTVHVKNVRHKLKDGTKHPKYIETVWGVGYKFIG 224 >UniRef50_A5WBW4 Two component transcriptional regulator, winged helix family n=20 Tax=Gammaproteobacteria RepID=A5WBW4_PSYWF Length = 238 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 107/236 (45%), Positives = 150/236 (63%), Gaps = 8/236 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VEDD + L YL K+ M V +E G++A I+ E PDLV+LD+MLPG DG+ Sbjct: 10 PRILIVEDDERLAMLTQDYLVKNGMDVAIETDGNRAIRRIINEQPDLVVLDVMLPGSDGL 69 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 T+CR++R + PI++LT+ DM+ +L LEMGA DY+ K P VLLAR+R LR++E Sbjct: 70 TVCREVRPHYHSPILMLTARTEDMDQVLGLEMGADDYVAKPAQPRVLLARIRALLRRSE- 128 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 S + L FG L ID R VTL + ++A+++LLW LA++AG+I+ Sbjct: 129 -------NAPSEEIPQRLEFGELVIDNGGRSVTLNGELVDFTSAEYDLLWLLASNAGRIL 181 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R+ + + LRG+ YDG DRS+DV ISR+R K+ D+ P RIKTVR+KGYLF Sbjct: 182 SREDIFERLRGIEYDGQDRSIDVRISRIRPKIGDDPENPKRIKTVRSKGYLFVKEG 237 >UniRef50_D2LZ20 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LZ20_BACS4 Length = 236 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 8/235 (3%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 M ++ +EDD ++ L A YL KH +V G + + NP LVLLDI+LPG Sbjct: 1 MKEKVLIIEDDEDIRELTALYLKKHSYEVFTAKDGYEGINIVQNNNPHLVLLDILLPGMK 60 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G IC+ +R PI+ L+ + + L+ GA DY+ K L AR++ +LR++ Sbjct: 61 GYEICQKIRMLSEAPIIFLSCKRDIRDKVKGLDAGADDYLTKPFDFTELEARIKANLRRS 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + P + G L ID + V ++SL T + +LL L + Sbjct: 121 KM-------NANRNEPKRVFSCGNLEIDLDSYDVFNKGNKVSLYTKELQLLMLLVENKNH 173 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + + + + G+ + G ++V V IS LR+K+ +N ++P IKTVR GY F+ Sbjct: 174 VFSAEKIYDQIWGIDHCGDLKTVMVHISNLRRKIEENPSKPKLIKTVRGFGYKFS 228 >UniRef50_P42244 Uncharacterized transcriptional regulatory protein ycbL n=84 Tax=Firmicutes RepID=YCBL_BACSU Length = 226 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 61/231 (26%), Positives = 112/231 (48%), Gaps = 6/231 (2%) Query: 5 VFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTIC 64 + VEDD + ++ YL K + G++ + + DLVLLDIMLP +GM Sbjct: 1 MLVEDDHSISEMVDHYLTKEGFGIVHAFDGEEGIRLFQQGSYDLVLLDIMLPKLNGMDFL 60 Query: 65 RDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQATL 124 + +R K + P++++++ D D++ L L GA DYI K L AR++ +R+ Q + Sbjct: 61 KIIREKSNIPVLMISAKDGDVDKALGLGFGADDYIAKPFSMIELTARVKAAIRRATQYSA 120 Query: 125 TKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDRD 184 K + L ID N V + L++ +++LL A++ ++ ++ Sbjct: 121 E------EPAVNKVIRIHQLAIDIDNVSVLKNGEPLQLTSTEWQLLCLFASNPKKVFTKE 174 Query: 185 ALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + +++ Y ++V + RLR+K+ D+ + P IKT+ GY Sbjct: 175 QIYRSVWNEEYFDDQNIINVHMRRLREKIEDDPSSPQYIKTLWGIGYKLGE 225 >UniRef50_A9AWM9 Two component transcriptional regulator, winged helix family n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWM9_HERA2 Length = 232 Score = 319 bits (819), Expect = 5e-86, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 121/236 (51%), Gaps = 6/236 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+D+ V ++ + + V G+ A + E DL++LDI LPG DG Sbjct: 1 MQRILIVDDEPSVVDVVRSRFEREGFAVGETGSGEDALVRLRNETYDLLILDIGLPGIDG 60 Query: 61 MTICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + R +RA+ P+++LT+ +++ ++ LE+GA DY++K P L+AR+R LR+ Sbjct: 61 FGVLRQMRAEGFEQPVIMLTARADEVDRVVGLELGADDYVVKPFSPRELVARVRALLRRT 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 +A+ + + L +D R T + +++L +F+LL LA+H GQ Sbjct: 121 AEASRLRQQIGDAAPTSS-----GLQLDNARRRATFRDVQLTLRPKEFDLLAYLASHPGQ 175 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + R+ LL + G R+VDV I RLR KL + AE I+T GY F Sbjct: 176 VFTREVLLGQVWGYDEYVDARTVDVHIRRLRSKLSEIDAESNLIQTEWGIGYRFIE 231 >UniRef50_C4G2P7 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G2P7_ABIDE Length = 257 Score = 319 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 3/231 (1%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETIL-RENPDLVLLDIMLPGKDGM 61 I+ V+DD E+ L+ +L +V + E+ L +LDIM+PG DG+ Sbjct: 26 KILVVDDDKEIADLVEIHLVSEGYEVRKANDAVTGLAILKSEEDISLAILDIMMPGMDGL 85 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ++ + +R P+++L++ +D++ I+ L GA DY+ K P L AR++ +LR+ + Sbjct: 86 SMVKKIRETSHIPVIMLSAKSTDLDKIVGLGNGADDYVTKPFNPLELTARVKANLRRFTE 145 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + S + + G L I+ R V + E L+ ++++L LA++ G++ Sbjct: 146 FNSGQKAGVDS--GDEIIEAGPLYINKSTREVRTYDKEAKLTPIEYDILCLLASNPGRVF 203 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 D + + + +V V I RLR+K+ +A IKTV GY Sbjct: 204 STDDIFTRVWNEKAFEGNNTVMVHIRRLREKIEMDARNAKIIKTVWGVGYK 254 >UniRef50_B7CCF4 Putative uncharacterized protein n=3 Tax=Firmicutes RepID=B7CCF4_9FIRM Length = 233 Score = 319 bits (818), Expect = 7e-86, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 108/234 (46%), Gaps = 4/234 (1%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ +D+AE+ ++ L +V G++ + + DL++LDIM+P +G Sbjct: 3 TRILVADDNAEIREILRILLTGEGYEVIEAKDGNEVLQLFDS-SIDLIVLDIMMPNMNGY 61 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 C LR + PI+ LT+ D + L GA DY+ K + L AR++ LR+ + Sbjct: 62 QTCLKLRETSNVPILFLTAKGLDSDKTLGFSSGADDYLAKPFSYSELTARVKALLRRYQV 121 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 K +ET L K L LT+ + + E+ L+ +F +L L + QI Sbjct: 122 YKGKK--EETLLDTEKDLSMDGLTLRYAQQNAEVNGKEVELTDIEFNILSTLMKNPKQIF 179 Query: 182 DRDALLKNLRGVSYDGL-DRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + L + Y + ++ V I LRKK+ + A P IKT+ KGY F Sbjct: 180 SAEQLYEKAWNEPYYYSANNTIMVHIRNLRKKIEKDPANPVYIKTIWGKGYRFE 233 >UniRef50_A4AL32 Putative two-component system response regulator n=2 Tax=Actinobacteria (class) RepID=A4AL32_9ACTN Length = 266 Score = 318 bits (817), Expect = 8e-86, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 115/232 (49%), Gaps = 11/232 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ VEDD V + + YL V G A + R +PDL++LD MLPG DG Sbjct: 40 RRVLVVEDDPTVLEVTSTYLRAAGFIVNTAIDGFGALDAAERFHPDLIVLDRMLPGIDGS 99 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +R++ PI+LLT++ S I LE GA DYI K P L+ R++ LR++ Sbjct: 100 EVCRRIRSRGDVPIILLTAMGSPDERIAGLEAGADDYISKPFSPRELVLRVQSILRRS-- 157 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 LTP G T+D + A E++L+ +F+LL L H GQ Sbjct: 158 --------IGDLTPEATFTLGEFTLDASAHSIVRAGEELALTAREFDLLAFLLKHPGQAF 209 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 R+ LLK++ G + G +V V + RLR+K+ + P + TV GY Sbjct: 210 SREQLLKSVWGWEF-GDLSTVTVTVRRLREKIETDPTHPTILATVWGVGYRL 260 >UniRef50_A4J267 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J267_DESRM Length = 232 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 124/233 (53%), Gaps = 8/233 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 TI+ +DD + +++ L + +V G+QA + PD+V++DIM+P DG+ Sbjct: 5 TILIADDDHRIVKIVSHSLEQEGYRVITAKDGEQAVQLATTMKPDIVIMDIMMPKLDGLE 64 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 + ++ K PI++L++ D ++ I+ +MG DY K PA L R++ LR+++ Sbjct: 65 ASQKIKMKVDVPIIILSAKDDVVDKIVGFKMGVDDYQTKPFSPAELALRVKAVLRRSKAV 124 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 KG L + I+ R+V + E++L+ +F++LW +A+H QI Sbjct: 125 PEKKG--------KDVLDYQNFYIEYSTRLVRIWGKEVTLTAKEFDMLWLMASHPNQIFS 176 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R LL+ + ++G + +V V I RLR+K+ +AA+P IKTV GY F Sbjct: 177 RLQLLEQIWESHFEGDEDTVTVHIRRLRRKIERDAAKPELIKTVWGVGYKFEA 229 >UniRef50_B2TJU3 Regulatory protein VanR n=9 Tax=Firmicutes RepID=B2TJU3_CLOBB Length = 230 Score = 318 bits (817), Expect = 9e-86, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 115/231 (49%), Gaps = 6/231 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N I+ V+D+ E+ +L+ L V G++A + + +E L++LD+M+P DG Sbjct: 3 NNILIVDDEKEIRNLLEINLKNEGYHVFKAKCGEEALKILEKEEVHLMVLDVMMPDMDGF 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C +R +++ PI++L++ D++ I + GA DY+ K L R+R R+ Sbjct: 63 EVCSKVRERYNIPILMLSAKGEDIDKIQGIMTGADDYVCKPFNNLELTVRIRALFRRTYF 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + ++ ID +T+AN E+SL+ +FE+L+ LAT+ G++ Sbjct: 123 LNTKIQV------SDDIIRIESMIIDKWKHKITIANNEVSLTAREFEILYLLATNRGRVF 176 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + + + + Y + +V V +SRLR KL + I TV GY Sbjct: 177 SAEEIFEKVWKEKYYQSNNTVMVHMSRLRDKLEKHMEGNKIIHTVWGVGYK 227 >UniRef50_C4L0X3 Two component transcriptional regulator, winged helix family n=10 Tax=Firmicutes RepID=C4L0X3_EXISA Length = 230 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 77/239 (32%), Positives = 117/239 (48%), Gaps = 10/239 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 MN I+ ED+ + S I L + V G +A RE D+VLLD+M+P DG Sbjct: 1 MNRILVAEDEHAIRSFIIVNLKRAGFDVFEATNGREAVTAFDREPFDVVLLDVMMPEMDG 60 Query: 61 MTICRDLRA-KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 C +R + I++LT+ + + I L GA DYI K P L+AR++ LR+ Sbjct: 61 FEACAAIRDLDENVGIIMLTARTLEEDKIEGLGKGADDYIAKPFSPGELVARIQALLRRV 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 E+ K L G ID + VT I L+ +++L+ L + Sbjct: 121 EKVKRK---------DSKRLKSGPFAIDLAAKQVTKYGQSIDLTPTEYDLICHLVQNEEI 171 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 ++ RDALL + GV+Y G ++VDV I RLR+K+ D+ + P I+T+ GY + H Sbjct: 172 VLSRDALLDAVWGVNYFGDRKTVDVNIRRLRQKIEDDPSHPVYIETLWGHGYKWRRHEA 230 >UniRef50_Q6F7B5 Two-component response regulator n=55 Tax=Bacteria RepID=Q6F7B5_ACIAD Length = 254 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 81/238 (34%), Positives = 125/238 (52%), Gaps = 6/238 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+DD + +L+ +L V Q + + RE L++LD MLP +DG++ Sbjct: 22 RILVVDDDVRLRTLLQRFLEDKGFVVKTAHDATQMDRLLQRELFSLIVLDFMLPVEDGLS 81 Query: 63 ICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ICR LR PI++LT+ SD + I LE GA DY+ K P LLAR+R LR+ + Sbjct: 82 ICRRLRQSNIDTPIIMLTARGSDSDRIAGLEAGADDYLPKPFNPNELLARIRAVLRRQVR 141 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 Q+ + + FG+ +D R +T ++L+T +F +L L H + + Sbjct: 142 EVPGAPSQQV-----EVVSFGSWALDLSTRTLTREGQVVTLTTGEFAVLKALVQHPREPL 196 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 RD L+ RG + ++RS+DV +SRLR+ + DN A I+TV GY+F P E Sbjct: 197 TRDKLMNLARGREWGAMERSIDVQVSRLRRLIEDNPARARYIQTVWGIGYVFVPDGAE 254 >UniRef50_A1R850 DNA-binding response regulator n=45 Tax=Actinobacteria (class) RepID=A1R850_ARTAT Length = 253 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 112/233 (48%), Gaps = 13/233 (5%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 M I+ V+DD + +I L + G QA E PDLVLLD+MLPG D Sbjct: 30 MKARILVVDDDEALAEMIGIVLRNDGFEPVFCADGGQALEVFRSSKPDLVLLDLMLPGSD 89 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G+ +CR +R + PIV+LT+ + + LE GA DY+ K PA L+AR+R LR Sbjct: 90 GIEVCRQIRGESDVPIVMLTAKSDTSDVVRGLESGADDYVPKPFKPAELVARVRARLR-- 147 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + L +TID +VT ISL+ +F+LL LA Q Sbjct: 148 ----------PGDQKAPETLRIADVTIDVAGHLVTRGGERISLTPLEFDLLVALARKPWQ 197 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + R+ LL+ + G + R V+V + RLR K+ + P + TVR GY Sbjct: 198 VFTRELLLEQVWGYRHAADTRLVNVHVQRLRSKIERDPEAPEVVLTVRGVGYK 250 >UniRef50_Q1IMA9 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q1IMA9_ACIBL Length = 230 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 79/238 (33%), Positives = 122/238 (51%), Gaps = 15/238 (6%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 M T+ VEDDA++ L+ +L V G+ + P+L LLDIM+PG D Sbjct: 1 MKQTVFVVEDDADIARLVRYHLEGAGFAVRTFLTGNGVIPESEKTPPNLFLLDIMVPGAD 60 Query: 60 GMTICRDLRAKWSG---PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHL 116 G+ ICR +R S P++ LT+ S+ + I L++GA DYI K P L+AR++ L Sbjct: 61 GLEICRQIRHSRSIAMTPVIFLTAKTSEADKIAGLDLGADDYIAKPFSPRELIARIKAVL 120 Query: 117 RQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATH 176 R+ E+ P + G + ID +T+ ++ + +F LL LA H Sbjct: 121 RRFER-----------PLPPAVVTAGDIVIDNGAMTLTVRGNLVTTTATEFRLLEYLARH 169 Query: 177 AGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 G++ RD LL + ++ RSVDV + R+R+K+ +N +P +KTVR GY F Sbjct: 170 PGRVFTRDQLLDAVWRETHYVTPRSVDVYVRRIREKIEENPEDPRYLKTVRGAGYRFE 227 >UniRef50_D0WIB8 DNA-binding response regulator VicR n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WIB8_9ACTN Length = 244 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 109/236 (46%), Gaps = 6/236 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ +DD ++ L+ YL +V G +A + DLVLLDIM+P DG + Sbjct: 11 ILIADDDQDIRELLRLYLESEGYRVREAVDGAEALGAVKAGGIDLVLLDIMMPRIDGYQV 70 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 R +R + P++++++ D + I+ L++GA DY+ K P LAR+R LR+ Sbjct: 71 LRRVRETSALPVIMVSAKGQDPDKIIGLDLGADDYLTKPFNPLEALARVRSCLRRAYGMP 130 Query: 124 LTKGLQETSLTP----YKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + S + L LT+D V+ + + L+ +F +L +H G+ Sbjct: 131 AGASPDDPSAKAPLRVARVLSVRDLTLDLDACVLHRGDEPLDLTPVEFRMLSLFMSHPGR 190 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + + + + G Y +V V IS+LR KL D+ I TVR GY Sbjct: 191 VFTKQQIFEEGWGEEYVASGNNVMVGISKLRAKLSDDPGA--YIATVRGLGYRMEA 244 >UniRef50_B4WRK5 Response regulator receiver domain protein n=1 Tax=Synechococcus sp. PCC 7335 RepID=B4WRK5_9SYNE Length = 262 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 75/269 (27%), Positives = 123/269 (45%), Gaps = 45/269 (16%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VED+A++ LI YL+K + + G A + PDL++LD+M+PG DG+ + Sbjct: 3 ILIVEDEADIAELIQLYLSKEGFRCHICRDGKTALDRFRLIQPDLIILDLMIPGLDGLEV 62 Query: 64 CRDLRAKWSG---PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 C +R + I++LT+ +M+ I+ L GA DYI+K P L+AR+R LR++ Sbjct: 63 CARVRQQNEIKDPYIMMLTARGEEMDRIIGLSTGADDYIVKPFSPRELVARVRAVLRRSL 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-------------------------- 154 + S P T+D R + Sbjct: 123 R---------GSHQPRTTYQTAHFTVDLDQRTASQKVVESVSREEGLEVEDSAEGNTSGQ 173 Query: 155 -------LANTEISLSTADFELLWELATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAIS 207 +A + L+ +F+LL ++ G++ +R L+ L G + G +R VD I+ Sbjct: 174 NAQNQLEIAQIPLELTPLEFDLLATFMSYPGRVWNRSQLIDKLWGEDFFGDERVVDTHIA 233 Query: 208 RLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 RLRKK+ + + P +KTV GY F Sbjct: 234 RLRKKIEPDPSAPTFVKTVVGVGYRFEDE 262 >UniRef50_C2W6L0 Two-component response regulator n=5 Tax=Firmicutes RepID=C2W6L0_BACCE Length = 250 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 70/238 (29%), Positives = 121/238 (50%), Gaps = 7/238 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDM-QVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+D+ + ++ L K + +T G + I D++LLD+MLP DG Sbjct: 18 KILLVDDEQGILDMLVLTLKKENFSHITTAINGAETLHLIKNHPFDIILLDVMLPDIDGF 77 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +R + PI+ +T+ SD++ + L +G DYI K P + AR+ + LR+ Sbjct: 78 ELCRQIRNYTNTPILFVTARSSDLDKLTGLGIGGDDYITKPFNPLEVAARINVQLRRQHM 137 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 ++ + LHF + ++ P ++T+ N + + + ELL L TH +I Sbjct: 138 TQEPNNGEKLN------LHFRSFSLYPSEGLITVNNEPVHCTAKELELLTFLCTHPNRIF 191 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 + L + + G++ G D++V + IS+LRKK+ +N P I +R GY F PH E Sbjct: 192 TAEQLYEQVWGLTSIGDDKTVVMHISKLRKKIEENPKLPTYIVNLRGIGYKFIPHTKE 249 >UniRef50_A5WB94 Two component transcriptional regulator, winged helix family n=2 Tax=Proteobacteria RepID=A5WB94_PSEP1 Length = 240 Score = 317 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 129/234 (55%), Gaps = 6/234 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I V+D ++ L+A YL + ++TV G++ + R+ PDL++LD+M+PG+DG+ Sbjct: 5 QHIAIVDDYPDIRELVAQYLTQEGYRLTVVADGNELRALLDRDVPDLIILDVMMPGEDGL 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ++CR +R++ + P++ L++ D++ IL LEMG DY+ K P LLAR++ LR+ Sbjct: 65 SLCRHIRSRSNTPVLFLSARTEDLDVILGLEMGGDDYLKKPFNPRELLARVKALLRRA-- 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQI 180 T + S ++ FG ++ R + +SLS +F LL L G+I Sbjct: 123 ---TPASEGASSLLEGSIRFGEWVLNCKLRELLGADGVSVSLSGTEFRLLAALLEKPGEI 179 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + RD LL + G + + DRS+D ISRLR+K+ + P I+T GY F Sbjct: 180 VTRDELLNKVSGRASEPFDRSIDNQISRLRRKIEPDPKNPIYIRTHWGGGYAFV 233 >UniRef50_Q63F03 Response regulator n=15 Tax=Firmicutes RepID=Q63F03_BACCZ Length = 240 Score = 317 bits (813), Expect = 2e-85, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 112/237 (47%), Gaps = 11/237 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQ-VTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 I+ V+D+ E+ +L+ A L K + + G + PDL+LLDIMLP DG Sbjct: 11 KKILIVDDEKEILNLLEAVLKKEGFRHIYTCTTGKGGIHMCRQVQPDLILLDIMLPDLDG 70 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++C +R PI L++ + D++ IL L +G DYI K P + +++ R+N+ Sbjct: 71 YSVCEQIRQFTFVPIFFLSAKNEDLDKILGLSIGGDDYITKPFSPKEVAYKMKAFFRRNQ 130 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 FG +TID V A T ++L+ +F +L L + QI Sbjct: 131 Y----------KEKNPNMYQFGDITIDEAQGTVLRAGTLLTLTAKEFNILLFLIKNPNQI 180 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + L + + G +Y G D + V + LR+K+ DN ++P + TVR GY Sbjct: 181 FSKARLYEAVWGETYLGNDNIMMVHMRHLREKIEDNPSKPNYLITVRGLGYKLNTKG 237 >UniRef50_C4L703 Two component transcriptional regulator, winged helix family n=2 Tax=Bacillales RepID=C4L703_EXISA Length = 229 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 106/233 (45%), Gaps = 10/233 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDM-QVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 I+ V+D+ ++ +LI L K ++ + P L +LD+MLP +G Sbjct: 4 PRILIVDDEQDLCTLIQRALEKEGFHEIRTAHTLKDGFDVFETFRPHLAILDVMLPDGEG 63 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ +RA+ + PI+ L++ +++ +L L +G DYI K P + R++ LR+ Sbjct: 64 YQLCQQMRAQSNIPILFLSAKSEEVDKLLGLAIGGDDYITKPFSPKEVAFRVKAQLRRVS 123 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 G ++ V + + L+ + LL + +I Sbjct: 124 MMEAPVAETT---------TVGPFQMNEDETEVYVNGERLELTAKEVGLLACFLRNPNRI 174 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + ++ L + G S+ G D +V V I RLR+K+ N +EP IKTV+ GY Sbjct: 175 LSKETLFTQVWGESFFGSDNTVMVHIRRLREKVEPNPSEPTYIKTVKGLGYRL 227 >UniRef50_C9XMT9 Two-component response regulator n=94 Tax=Bacteria RepID=C9XMT9_CLODC Length = 238 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 110/232 (47%), Gaps = 2/232 (0%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VED+ E+ I YL V G + + I + L ++DIM+P DG+ Sbjct: 4 YNILVVEDEKEIADAIEIYLLNQGYNVFKGYNGLEGLKVIENQEIHLAIVDIMMPKMDGI 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 T+ LR ++ P+++L++ +++ I+ L +GA DY+ K P LLAR+ LR+ + Sbjct: 64 TLTMRLRENYNFPVIMLSAKSEEVDKIMGLNIGADDYVTKPFKPLELLARVNSQLRRYTK 123 Query: 122 ATLTKGLQETSLTPYK-ALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 G +E + G L ++ + V + I + +F++L L +AG++ Sbjct: 124 YLNMVGNKEQKVESDDSVFAIGGLELNENTKEVNIDGKYIKTTPIEFKILSLLMRNAGRV 183 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 D + + + + D +V V + +R+K+ + P +K V GY Sbjct: 184 FSADEIYERVWNENAINTD-TVMVHVRNIREKIEIDPKNPKYLKVVWGVGYK 234 >UniRef50_C4LLE8 Two-component system, response regulator n=19 Tax=Corynebacterium RepID=C4LLE8_CORK4 Length = 268 Score = 317 bits (813), Expect = 3e-85, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 113/230 (49%), Gaps = 7/230 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+D+ + ++A+YL + G QA + R +PD+V+LD+ LP DG+ Sbjct: 42 RVLVVDDEQPLAQMVASYLIRAGFDTRQAHTGTQAVDEARRFSPDVVVLDLGLPELDGLE 101 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR +R I++LT+ S+ + I L +GA DYI K L+ R+ LR+ Sbjct: 102 VCRRIRTFSDCYILMLTARGSEDDKICGLTLGADDYITKPFSIRELVTRVHAVLRR---- 157 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T L G L +DP+ V + T + L+ +FELL LA GQ++ Sbjct: 158 ---PRTSTTPPQVTTPLIVGDLILDPVAHQVRVGETTVELTRTEFELLVALALRPGQVLT 214 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 R L+ + ++ G +R VDV I LR+KL + I TVR GY Sbjct: 215 RHDLVTEVWDTTWVGDERIVDVHIGNLRRKLGTDTRGRGFIDTVRGVGYR 264 >UniRef50_B1ZQC8 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=B1ZQC8_OPITP Length = 241 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 131/238 (55%), Gaps = 12/238 (5%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ ++DD + +L+ YL + V + + PDLV+LD+MLP DG+ Sbjct: 16 TRVLIIDDDERLTALLTEYLRRFGFTVRAAAHPRDGLRALKADPPDLVILDVMLPDTDGL 75 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR++RA PI++LT+ + I+ LEMGA DY+ K P L+AR++ LR+ Sbjct: 76 AVCREVRADSRIPIIMLTARGDVTDRIVGLEMGADDYLPKPFEPRELVARIQAVLRR--- 132 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + +AL G L ++ R V LA E+ L+TA+FELL LA + G++M Sbjct: 133 ---------GTRDDAEALRLGALEVNWTTRSVRLAQRELELTTAEFELLGYLARNRGRVM 183 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 RD +L RG+ +D DRS+D+ +SRLR+KL D+ P I+TVR GY F E Sbjct: 184 SRDRILDGTRGIDWDAYDRSIDILVSRLRQKLGDDPKRPTFIRTVRGVGYSFIGGGRE 241 >UniRef50_C5D3X1 Two component transcriptional regulator, winged helix family n=4 Tax=Bacteria RepID=C5D3X1_GEOSW Length = 232 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 12/236 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ +EDDA + LI Y+ K G++ E E+PD ++LDIMLP +G Sbjct: 6 KVLIIEDDANIVELIQLYMDKAGYSYISASDGEEGLELFYSESPDCIILDIMLPKLNGWE 65 Query: 63 ICRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+ +R PI++LT + I L +GA DYI+K P L+AR++ LR+ Sbjct: 66 VCKTIRMEDRHVPIIMLTGKGETYDVIKGLNIGADDYIVKPFDPNELIARVKTVLRRT-- 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 S + L F + I V + N E+ ++ + EL + LA + Q++ Sbjct: 124 --------ILSESEKDRLQFDNIIIHMKEYRVLINNEEVQMAPKEMELFYYLAMNPKQVL 175 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R LL + G ++G R+VDV I R+R KL ++ A+ + I T+R GY F ++ Sbjct: 176 TRQQLLDRVWGYEFNGDPRTVDVHIKRIRDKLAEHKAK-WSIVTIRGVGYRFEENS 230 >UniRef50_C3WCS3 Two-component system response regulator n=4 Tax=Bacteria RepID=C3WCS3_FUSMR Length = 223 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 121/233 (51%), Gaps = 17/233 (7%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+D+ ++ +++ YL K +V+ G++ + + DLV+LD+MLP KDG Sbjct: 6 MKRILIVDDEEQIRNILRMYLVKEGYEVSEAEDGEKGLKLFYEKPFDLVILDVMLPKKDG 65 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +I R+++ P+++LT+ D + + EMGA DYI K VLLAR++ LR Sbjct: 66 WSILREIKKYTETPVIMLTARDDSEDEVFGFEMGADDYITKPFNNKVLLARVKSLLR--- 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 +T+ + G L I+ + V+ + EI L+ +++LL L + Sbjct: 123 ---------KTNNMVESIIEIGDLVINDTSHSVSNSKGEIELAPKEYDLLVYLIKNNKIA 173 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + R+ LL + G + G DR++D I LRKK+ NA IKT+R GY Sbjct: 174 LSREKLLNEVWGYDFLGDDRTIDTHIKNLRKKIGKNA-----IKTIRGIGYKL 221 >UniRef50_Q3AEH2 DNA-binding response regulator n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AEH2_CARHZ Length = 226 Score = 316 bits (812), Expect = 3e-85, Method: Composition-based stats. Identities = 61/232 (26%), Positives = 114/232 (49%), Gaps = 10/232 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ VEDD ++ +A L + G+ A E REN DLV+LD+ LP +DG Sbjct: 1 MYKILVVEDDQKIQKALAHLLKAENYDFVQAYDGEAAVEHFYRENFDLVILDLNLPKQDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++ ++++ + P+++LT+ +M+ I +G DY+ K PA L+ R++ LR+ Sbjct: 61 FSVLKEIKNREDVPVIILTARGEEMDKITGFTLGVDDYLTKPFSPAELMLRIKAVLRRYR 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + L +G + ++ R V + L++ ++ LL L + +I Sbjct: 121 KGRG----------EEEILKYGKVAVNLKTREVLKNGEPVELTSKEYALLELLFKNPNRI 170 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 ++ ++ L ++ V V + RLR+K+ ++ + P IKTV GY Sbjct: 171 FTKEQIMDRLWPDTFPEDPNIVSVLVRRLREKIEEDPSSPRIIKTVWGVGYK 222 >UniRef50_A8ZYB8 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfococcus oleovorans Hxd3 RepID=A8ZYB8_DESOH Length = 234 Score = 316 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 130/235 (55%), Gaps = 4/235 (1%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENP-DLVLLDIMLPGKDG 60 + I+ ++DD + +L+ Y + ++V G +++ P D+V+LDIMLP DG Sbjct: 3 HRILIIDDDKALQALLRDYFEESHLEVAFALTGLDGIKSVAAGTPCDIVVLDIMLPDIDG 62 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + +RA P+++LT+ + + I+ LE+GA DY+ K P LLAR++ LR+ Sbjct: 63 FETLKKIRAISQVPVIMLTAREDQADRIIGLELGADDYMHKPFNPRELLARIKAVLRRAT 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + S + FG++ ID RV+ + EI+++ + ++L L +H G Sbjct: 123 ASAEAAPVSSPSACA---MVFGSVEIDFAGRVLRKSGREIAMTGVETDILNALISHKGTP 179 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + RD LL G ++ DRS+DV ISR+RKKL D+ + P IKTV KGY++A Sbjct: 180 LTRDRLLDLASGRDFETFDRSIDVHISRIRKKLEDDPSAPRYIKTVWGKGYMWAE 234 >UniRef50_B2V3E9 Transcriptional regulatory protein ResD n=5 Tax=Clostridiales RepID=B2V3E9_CLOBA Length = 233 Score = 316 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 120/233 (51%), Gaps = 7/233 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ +D+ V I YL +M G +A E E PDLV+LD+M+P G Sbjct: 5 KKILICDDNDTVNETIGTYLKNDEMTYISAYDGKEALEKFNAEKPDLVILDLMMPKIFGT 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+++R + PI++LT+ +++ I+ LE+GA DYI+K P ++ R++ R+ Sbjct: 65 EVCKEIRKISNVPIIMLTAKGEEIDRIVGLEIGADDYIVKPFSPREVVTRIKTIFRRVGN 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 A + L K + F ID + L +I ++ + ++L+ LAT+ G+++ Sbjct: 125 ANIDTNL------NRKLVTFNNFNIDLDKYEIRLNKEKIDVTPKECQILYLLATNEGRVL 178 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ +L + G Y G R VD I R+RKK+ + + + IKTV GY F Sbjct: 179 SREEILDKVWGYDYFGDTRVVDTQIKRIRKKIPEEGEK-WSIKTVYGIGYKFE 230 >UniRef50_C0Z8X3 Two-component response regulator n=3 Tax=Firmicutes RepID=C0Z8X3_BREBN Length = 240 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 58/234 (24%), Positives = 120/234 (51%), Gaps = 6/234 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ ++D+A++ L++ YL + G A DLV+ DIM+P DG Sbjct: 12 KTILIIDDEAQIRELLSIYLKNYGFATYEAGNGVDALAVFSNVQIDLVIADIMMPMMDGY 71 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + + +R P + L++ DM+ I+ L++GA DY+ K P +++R++ R+ + Sbjct: 72 ELLKKIRHISEVPFLFLSAKSDDMDKIIGLQLGADDYVGKPFNPIEVVSRVQALFRRMDV 131 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + ++ + G + +D ++ + + +++ +F++L L HAG++ Sbjct: 132 FSKGEKQN------HEIIQIGDVMLDLVSCKLYKNGQQKEVTSYEFKILSLLMKHAGRVF 185 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + ++ +++ G Y G + + V IS+LR+K+ DN +P + T+R GY F Sbjct: 186 TKASIYEHVWGQEYIGDENLIMVYISKLREKIEDNPRKPVYLITIRGLGYRFEK 239 >UniRef50_A6LXP4 Two component transcriptional regulator, winged helix family n=5 Tax=Clostridiales RepID=A6LXP4_CLOB8 Length = 227 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 14/236 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 MN I+ +ED+ V ++ AYL + V G E +E DLV+LD+MLP DG Sbjct: 1 MNNILIIEDEKSVSDVVKAYLEREGYGVYSTENGLDGIEVFRKERIDLVILDLMLPDIDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ LR I +LT+ + + I L +GA +Y+ K P L AR+ R+ Sbjct: 61 EEVCKILRKISDVYIFMLTAKSTLSDKIEGLNIGADEYLTKPLSPRELTARVNALFRRVG 120 Query: 121 QATLTKGLQETSLTPYKALHFGT--LTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 + F L ID R+V L+ EI+L+ +F++L+ LA++ G Sbjct: 121 ------------CKKENVISFNDNKLIIDVDKRLVKLSGEEINLTPNEFDILYILASNQG 168 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ R+A+++ G+ +DG DRS+DV I LRKK+ ++ P I TV GY F Sbjct: 169 KVFTREAIIERAFGMEFDGSDRSIDVHIKNLRKKIEEDTKSPQYIVTVTKIGYKFG 224 >UniRef50_Q1J2L1 Two component transcriptional regulator, winged helix family n=5 Tax=Bacteria RepID=Q1J2L1_DEIGD Length = 248 Score = 316 bits (811), Expect = 4e-85, Method: Composition-based stats. Identities = 77/236 (32%), Positives = 118/236 (50%), Gaps = 12/236 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M T++ VED+A V +I YL +H +V V G + PDLVLLD+M+PG DG Sbjct: 22 MKTVLIVEDNAGVRDMIREYLEEHGYRVRVASNGQEGLLEARHHRPDLVLLDVMMPGMDG 81 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + R RA P++ LT+ D++++ +L LE+GA DY+ K A LLAR+R +LR++ Sbjct: 82 LEFLRRFRATEQVPVIFLTARDTELDKVLGLELGADDYVTKPFSMAELLARVRANLRRS- 140 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + P L G L +DP R + + L+ ++FEL+ G++ Sbjct: 141 ----------SEPLPNAVLRAGELELDPTTRTFLVRGERVDLTRSEFELMSAFLRAPGRV 190 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R L G +R++DV + LR K+ +P I+TV GY P Sbjct: 191 FTRLE-LLEQLQEEALGSERTIDVHVRNLRAKIEAEPGKPRLIETVFGVGYRLNPD 245 >UniRef50_Q07HK8 Two component transcriptional regulator, winged helix family n=13 Tax=cellular organisms RepID=Q07HK8_RHOP5 Length = 258 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 132/235 (56%), Gaps = 6/235 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +I+ VEDD E SLIA YL + V+ G + + DL+++D+MLP +DG+ Sbjct: 15 PSILVVEDDRETRSLIAKYLRANGCHVSAAADGREMSRIMADHRVDLIIMDLMLPDEDGL 74 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ++CR +RA+ PI++LT+ D++ I+ LEMGA DY+ K P LLAR+ LR+ Sbjct: 75 SLCRKVRARSQVPIIMLTARGEDIDRIVGLEMGADDYMAKPFNPRELLARINAVLRR--- 131 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQI 180 L + F +D R + A ++L++A+F+LL AG++ Sbjct: 132 --QASALNASENVGATCFSFDGWRMDFRLRELRNPAGARVALTSAEFDLLRAFCERAGRV 189 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + R+ LL+ +G + DRS+DV +SR+R+K+ + A+ IKTVR+ GY+F P Sbjct: 190 LSREVLLELTQGPNCGSFDRSIDVLVSRIRRKIEADPADALMIKTVRSGGYMFTP 244 >UniRef50_A5N716 Transcriptional regulator n=15 Tax=Firmicutes RepID=A5N716_CLOK5 Length = 237 Score = 315 bits (810), Expect = 5e-85, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 117/234 (50%), Gaps = 7/234 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I V+D+ ++ +I +YL V V G A + NPDL++LD+MLP G Sbjct: 10 KKIFVVDDEVKITEVIKSYLENSGYAVYVAYNGVDAMNLFNKINPDLIILDLMLPDICGE 69 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 IC LR + PI++LT + + + L++GA DY+ K P L+AR++ LR+ E Sbjct: 70 DICEMLRKRSKVPIIMLTGKTDEEDILNGLDIGADDYMTKPFSPRQLVARVKALLRRTED 129 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 K + L+ L I+ +N V A ++L+ ++ +L + + G+I Sbjct: 130 ELGEKNSLFS-------LNDNDLIINDLNYEVKKAGNIVNLTPIEYNILITMIRYPGKIF 182 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R+ L+ G ++ G DR++D I LR K+ DN EP I T+R GY F Sbjct: 183 TREELIIVTLGQNFKGYDRTIDSHIKNLRYKIEDNPKEPEYIVTMRGIGYKFGS 236 >UniRef50_P94504 Transcriptional regulatory protein yvrH n=5 Tax=Bacillus RepID=YVRH_BACSU Length = 237 Score = 315 bits (810), Expect = 6e-85, Method: Composition-based stats. Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 9/234 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQ-VTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+ + +I L K + + ++A + DL++LD+M+ G G Sbjct: 6 ILIVDDEKAIVDMIKRVLEKEGYRNILDAASAEEAIPVVKANKVDLIVLDVMMGGMSGFE 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 C +R PI LT+ SD + + +GA DYI K P L AR+R HL++ Q+ Sbjct: 66 ACTLIREYSDAPIFFLTARSSDADKLSGFAVGADDYITKPFNPLELAARIRAHLKRTYQS 125 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 T + + + T P N + + ++ S +LL H ++ Sbjct: 126 KET--------SSNQTYTYDYFTFSPQNAELIVGGEAVACSAQLLQLLQYFCEHPNVVLS 177 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 +D + + + G G + +V V I +LR+K+ + + P I TVR GY F P+ Sbjct: 178 KDQIYEKVWGYPSYGDNNTVMVHIRKLREKIERDPSNPEYIVTVRGLGYRFIPN 231 >UniRef50_C8WVL8 Two component transcriptional regulator, winged helix family n=1 Tax=Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 RepID=C8WVL8_ALIAD Length = 233 Score = 315 bits (809), Expect = 7e-85, Method: Composition-based stats. Identities = 63/236 (26%), Positives = 120/236 (50%), Gaps = 8/236 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +TI+ +D+ ++ +++ YL + V G + + +P L++LD+MLP G Sbjct: 5 HTILVADDEKKIADVLSLYLEQAGFGVVCVDNGSEVLRRLEGLHPSLIILDLMLPDIPGE 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C +RA+ + PI++LT+ D + + L++GA DY+ K P ++AR++ LR+ Sbjct: 65 EVCMAVRARSAVPILMLTAKHRDEDRLRGLQIGADDYVTKPFNPNEVVARVQAILRRT-- 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + L G L ID +++VV L+ +++LL L+ H ++ Sbjct: 123 ------MLDHPLADRLEYRDGDLVIDALSQVVYKGGINAELTATEYKLLVILSRHPRRVF 176 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R+ L++ + G+ + G R++D + LR K+ D+ P I+TV GY F Sbjct: 177 SREELIERVFGMDFRGDVRTIDAHVKNLRAKIEDDPKSPVYIQTVYGMGYRFGGDG 232 >UniRef50_C0WE14 Two-component system transcriptional regulator n=1 Tax=Acidaminococcus sp. D21 RepID=C0WE14_9FIRM Length = 234 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 72/239 (30%), Positives = 120/239 (50%), Gaps = 10/239 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N+I+ +DD ++ S++ +Y V + G +A + + ++PD+++LDIM+PG DG Sbjct: 4 NSILIADDDEKLLSVLLSYFKDEQFTVYLARDGGEALKRLKEDHPDIMVLDIMMPGIDGF 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR R PI+ L++ D + + ++ L +GA DY++K L+AR++ LR+ Sbjct: 64 EVCRRARQFTDIPIIFLSAKDDEADRLVGLHLGADDYVVKPFHVRELIARVKSFLRRRRG 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 L++ L ID V ISL+ +F LL LA+ ++ Sbjct: 124 EVLSQVAS---------YEIRDLFIDKERFEVRRKKAWISLTPTEFSLLDILASAPDRVF 174 Query: 182 DRDALLKNLRGVSYD-GLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 R LL+ G +Y G +R++D I LRKKL + ++P I TV GY F E Sbjct: 175 SRMQLLEKAMGGAYYEGAERTIDTHIRNLRKKLEPDPSQPIYIVTVYGVGYKFQGANHE 233 >UniRef50_B2V7Q1 Two component transcriptional regulator, winged helix family n=3 Tax=Hydrogenothermaceae RepID=B2V7Q1_SULSY Length = 231 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 74/239 (30%), Positives = 122/239 (51%), Gaps = 14/239 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I +EDD ++ L+ K V P G A E I +E PD+V+LD+M+P DG Sbjct: 1 MALIYVIEDDEDINELLTYNFKKEGFDVRSFPNGKVAFEHIKQEKPDIVVLDLMMPEVDG 60 Query: 61 MTICRDLRAKWS---GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 + C+ +R+ P+++LT+ ++++ I+ LE+GA DY+ K LLAR++ LR Sbjct: 61 LEFCKLVRSDKELEHIPLIMLTAKSTEIDKIVGLELGADDYVTKPFSFRELLARVKALLR 120 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 +++ E FG L I P VT+ + L+T F+LL L Sbjct: 121 RSKSLHFPTAKPE--------YKFGDLKISPEKFEVTIKGQPVHLTTTQFKLLLALVNSQ 172 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 G+++ RD +++++ D DR++DV I +LR+ L + IKT+R GY + Sbjct: 173 GKVLSRDYIIEHVWAWDKDVYDRTIDVHIKKLRELLKEYGN---CIKTIRGVGYKWECE 228 >UniRef50_C7N1J8 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=4 Tax=Coriobacteriaceae RepID=C7N1J8_SLAHD Length = 231 Score = 315 bits (808), Expect = 1e-84, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 8/233 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 TI+ V+D+ + ++ L K QV GD A ++ DL +LDIM+PG +G Sbjct: 7 TILLVDDEQSIIDFVSYNLRKAGYQVDTAENGDVALAMSRHKHYDLYVLDIMMPGMNGYE 66 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR+LR + + P++ L++ DS+++ ++ LE+GA DY+ K L+AR+R LR+ Sbjct: 67 LCRNLRTRTNAPVLFLSARDSELDKVVGLEIGADDYLAKPFGVRELIARVRALLRR---- 122 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 G + +++ G +T+D + N I L+ +FELL L AG++ Sbjct: 123 ----GQMDAEPMAGESITAGGITLDEARHIAEGPNGSIDLTPREFELLSALMKVAGKVAS 178 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R+ LL+ G Y ++VD I RLR KL +P I+TVR GY F Sbjct: 179 REDLLREAWGWEYITETKTVDTHIKRLRDKLAAAGFDPGIIETVRGYGYRFRA 231 >UniRef50_Q0ASG1 Two component transcriptional regulator, winged helix family n=15 Tax=Proteobacteria RepID=Q0ASG1_MARMM Length = 229 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 77/241 (31%), Positives = 115/241 (47%), Gaps = 16/241 (6%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 M ++ VED+ + +L+ L K V V G+ A PDLV++D MLP Sbjct: 1 MKAHVLVVEDEDALATLLQYNLEKEGYSVAVARDGEDALMQAEETTPDLVMVDWMLPKVS 60 Query: 60 GMTICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHL 116 G+ +CR LR + PI++LT+ + + + L+ GA DY++K L AR+R L Sbjct: 61 GIEVCRRLRGRQETANVPIIMLTARGEETDRVRGLDTGADDYVVKPFSMTELFARIRAVL 120 Query: 117 RQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATH 176 R+ + G +T+D + V A+ EI L +F LL L H Sbjct: 121 RRIRPGLA-----------EDVIEAGDITMDRVAHRVKRADREIHLGPTEFRLLDYLMQH 169 Query: 177 AGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 G++ R+ LL + G R+VDV + RLRK L N E I+TVR+ GY F + Sbjct: 170 PGRVFSREQLLDAVWGSDVYVEARTVDVHVGRLRKALN-NKEERDPIRTVRSAGYAFDVN 228 Query: 237 A 237 A Sbjct: 229 A 229 >UniRef50_A9AYH1 Two component transcriptional regulator, winged helix family n=2 Tax=Chloroflexi RepID=A9AYH1_HERA2 Length = 238 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 81/236 (34%), Positives = 124/236 (52%), Gaps = 5/236 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ VED ++ ++ L+ QV G A + PDLV+LD MLP DG+ Sbjct: 6 PTILVVEDAVDLAEVLVRELSNLGYQVWHAADGRTALSLHQQHQPDLVILDWMLPQLDGL 65 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R +R S P+++LT+ + + ++ LE+GA DY+ K L+AR+R LR++++ Sbjct: 66 EVLRTIRQTKSTPVLMLTARSEETDLVVGLELGADDYLTKPFGMRELIARVRALLRRDQR 125 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + LQ + + L +G L +DP +V L E+ L+ +F +L L + G+ Sbjct: 126 I--QQLLQADAQPATEVLRYGDLVLDPHLHIVALRQQELDLTPTEFAILDLLLRNPGRAF 183 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R+ LL + G SY G DRSVD A+ RLRKKL D I+TV GY A Sbjct: 184 SRNYLLDTIWGQSYVGGDRSVDNAMLRLRKKLADFGDA---IETVWGLGYRLQAEA 236 >UniRef50_Q67J79 Two-component response regulator, CheY-like n=1 Tax=Symbiobacterium thermophilum RepID=Q67J79_SYMTH Length = 232 Score = 314 bits (807), Expect = 1e-84, Method: Composition-based stats. Identities = 75/232 (32%), Positives = 109/232 (46%), Gaps = 14/232 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+D+ + LI YLA V G A + PDLVLLD+M+P DG Sbjct: 9 VLVVDDEPRMRELIRLYLAAE-CTVLEAGDGLTALRAVRDAGPDLVLLDVMMPRLDGWQT 67 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 + +R + + P+++LT+ + + L MGA DYI K L AR++ LR++ Sbjct: 68 LQRIREESAVPVIMLTARGGVADRVQGLRMGADDYIAKPFDGRELAARVQAVLRRSAGQV 127 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + G+LTI P R A + L+ +F+LL LA H GQ+ R Sbjct: 128 EANVP----------IRRGSLTIRPAERTALYAGRPLPLTPKEFDLLALLAAHPGQVFSR 177 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + LL + G + G R+VD I LR KL + A I TV GY FA Sbjct: 178 EKLLDRIWGPDFQGDARTVDAHIKNLRDKLGEGAG---LILTVWGVGYRFAE 226 >UniRef50_B1WRX4 Two component transcriptional regulator n=11 Tax=Cyanobacteria RepID=B1WRX4_CYAA5 Length = 225 Score = 314 bits (805), Expect = 2e-84, Method: Composition-based stats. Identities = 78/232 (33%), Positives = 113/232 (48%), Gaps = 14/232 (6%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VED+ ++ I L VTV G T NPDL+LLD MLPG G+ I Sbjct: 6 ILVVEDEVKLAQFIELELKYEGYTVTVVNDGLSGLTTARESNPDLILLDWMLPGISGLDI 65 Query: 64 CRDLRAK-WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 C+ LR PI+LLT+ D + + L+ GA DYI+K LLAR+R +LR+N Sbjct: 66 CKRLRQTGSKVPIILLTAKDDISDRVAGLDAGADDYIVKPFNLEELLARVRANLRRNH-- 123 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 L F L+++ R V + I L+ +F+LL L +H Q++ Sbjct: 124 ----------EEDPDLLQFLDLSLNRNTREVFRGSRLIELTAKEFDLLEYLMSHPKQVLS 173 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 RD +L+ + G + G ++V + LR KL E I+TVR GY+ Sbjct: 174 RDQILERVWGYDFMGDSNIIEVYVRYLRLKLEAE-QEKRLIQTVRGVGYVLR 224 >UniRef50_C6LDL3 DNA-binding response regulator YycF n=2 Tax=Firmicutes RepID=C6LDL3_9FIRM Length = 237 Score = 313 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 119/235 (50%), Gaps = 2/235 (0%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ VEDD ++ + AYL + G + + +E+ DL+LLD+MLPGK G Sbjct: 5 RRVLIVEDDEDISMVEEAYLEAAGFDTAICRDGGEVAGLLGKESFDLILLDLMLPGKSGY 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ICR++R + PI+++T+ ++ I L +GA DYI K PA L+AR+ +LRQ ++ Sbjct: 65 DICREIREQVDIPILMVTARTETVDKIRGLGLGADDYIAKPFDPAELVARVTANLRQYDR 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + E + + L I + V EI +FELL LA + + Sbjct: 125 MMRK--IPEEKTEEPEEICVADLRILVNSWKVYKGEREIKFPNREFELLKFLAMNPNIVF 182 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R+ L + + G Y G +V V I+R+R+K+ D++ P ++TV GY F Sbjct: 183 SREQLFEKIWGYDYVGDSVTVMVHINRIREKIEDDSKNPKILETVWGAGYRFNKD 237 >UniRef50_A1Z6C8 Response regulator receiver n=1 Tax=Sulfobacillus acidophilus RepID=A1Z6C8_9FIRM Length = 229 Score = 313 bits (803), Expect = 4e-84, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 122/231 (52%), Gaps = 10/231 (4%) Query: 5 VFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTIC 64 + V+DDA + L YL V G A + + D+++LD+MLP DG + Sbjct: 2 LLVDDDAHIRELCRMYLEHAGFDVLEAGDGPTALTQLEQHPVDVMVLDLMLPEMDGFQVL 61 Query: 65 RDLRAKWS-GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 ++R + + P+++LT+L + + I+ L+ GA DY++K P L++R+R LR+ A Sbjct: 62 AEVRRRETWLPVIMLTALGDEEDRIMGLDQGADDYLIKPFSPRELVSRVRAVLRRAFLAP 121 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 K L L +D R V + ++L+ +F+LL+ LA+H Q+ R Sbjct: 122 A---------DEGKLLRHPGLIVDVAQRRVQAGDDVLNLTPREFDLLYFLASHPKQVFSR 172 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + LL + G+ +DG R+VDV ++RLR+KLL + ++TV +GY F Sbjct: 173 EHLLDRVWGLDFDGDSRTVDVHVTRLRQKLLASNTPYEYLETVWGQGYRFV 223 >UniRef50_C7ND40 Two component transcriptional regulator, winged helix family n=4 Tax=Fusobacteriaceae RepID=C7ND40_LEPBD Length = 226 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 13/233 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ +EDD ++ L+ L V G + + D++LLD+MLP GM Sbjct: 4 KILVIEDDPKISRLLEIELKFEGFDVFFAYDGKEGLNMAKYGSYDIILLDVMLPKMSGME 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C+ +R PI++LT+ D + ++ + GA DY+ K LLAR++ LR+ +++ Sbjct: 64 VCKRIRETSQVPIIMLTAKDEISDKVVGFDYGADDYMTKPFSNEELLARIKALLRRTKKS 123 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLA--NTEISLSTADFELLWELATHAGQI 180 + KG F LTI+ V I LS +FELL L + G + Sbjct: 124 VVHKG----------IFEFEDLTINYSTYEVFRDYGKNLIQLSKREFELLDFLVLNKGIV 173 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 + RD +L+ + G Y G D +D+ I LR K+ D E I+TVR G++F Sbjct: 174 LSRDKILEEVWGFDYIGNDNILDLYIKYLRDKI-DRPYERKFIQTVRGIGFIF 225 >UniRef50_A6TL65 Two component transcriptional regulator, winged helix family n=6 Tax=Bacteria RepID=A6TL65_ALKMQ Length = 240 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 63/234 (26%), Positives = 115/234 (49%), Gaps = 11/234 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ ++D+ + + + V+V G++A + D ++LD+MLP DG+T Sbjct: 18 KVLIIDDEKLLVKGLRKSFEQEGFDVSVAYDGEEALRVFESGSFDFIILDLMLPKIDGIT 77 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C +R + I++LT+ D D++ IL LE+GA DY+ K L+AR+R +R+ E+ Sbjct: 78 LCNRIRQQSDVFIIMLTAKDGDIDKILGLELGADDYMTKPFNTRELIARMRTLIRRQEKG 137 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + K F L +D +R V I+L+ +F++L L + G++ Sbjct: 138 EVKK----------DEYQFRDLMVDIGSRTVNRGEEVINLTPKEFDILVLLIRNKGRVFG 187 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R+ + + + G R++DV + LR+KL D + I+T GY F Sbjct: 188 REEIFQLVWGEPCY-DTRTIDVHVKNLREKLKDIKTKGPMIETKWGVGYYFRKD 240 >UniRef50_Q65F19 Two-component response regulator YvrH n=85 Tax=Firmicutes RepID=Q65F19_BACLD Length = 242 Score = 312 bits (802), Expect = 5e-84, Method: Composition-based stats. Identities = 62/235 (26%), Positives = 113/235 (48%), Gaps = 6/235 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDM-QVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ V+D+ + ++ L K +V ++A + + ++ L+LLD+M+PG+ G Sbjct: 5 TILIVDDEDAIVQMVKRVLTKEGFSEVLTASSAEEALDIVKKDTVHLILLDVMMPGQTGF 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + ++R + PI LT+ SD++ + GA DYI K P L+AR++ HL++ Sbjct: 65 DVSPEIRRHTNAPIFFLTAKTSDLDKLSGFAYGADDYITKPFNPLELIARIKAHLKRTYI 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 +S Y+ F P + + +S S +LL H +++ Sbjct: 125 HKEVAAASVSSAYEYERFIF-----HPDFAELIVDGETVSCSAQLLQLLQYFCDHPNRVL 179 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 +D + + + GV G +V V I +LR+K+ + + P I T+R GY F P+ Sbjct: 180 SKDQIYEKVWGVPSYGDSNTVMVHIRKLREKIEKDPSSPEYIVTIRGLGYKFVPN 234 >UniRef50_A8DJW5 Transcriptional regulatory protein n=1 Tax=Candidatus Chloracidobacterium thermophilum RepID=A8DJW5_9BACT Length = 242 Score = 312 bits (802), Expect = 6e-84, Method: Composition-based stats. Identities = 84/244 (34%), Positives = 120/244 (49%), Gaps = 21/244 (8%) Query: 1 MNT-IVFVEDDAEVGSLIAAYLAKHD-MQVTVEPRGDQAEETILRENPDLVLLDIMLPGK 58 M IV +EDD ++ I L + VT+ G+ T+L P+L+LLDI LP Sbjct: 1 MKRSIVIIEDDTDIAQSIRYNLEQEGSFHVTITTTGEAGLRTVLEHPPNLILLDINLPLM 60 Query: 59 DGMTICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLH 115 +G ICR LR A PI++LT+ + + I L +GA DYI K L+AR+ Sbjct: 61 NGFEICRRLRREEATAHVPIIMLTARTDETDKIHGLGLGADDYITKPFSVRELMARINAV 120 Query: 116 LRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELAT 175 LR+ E TP GTL ID + VV EI+L+ +F LL LA Sbjct: 121 LRRTEG------------TPSSVYDDGTLFIDYNHFVVRCQGQEINLTRKEFALLKLLAQ 168 Query: 176 HAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 G+++ R+ LL + G+ YDG R++DV I R+R+KL + I+T GY F Sbjct: 169 SKGRVLTREYLLDRVWGIDYDGETRTLDVHIRRVRQKLGIDG----YIETAVGIGYRFVE 224 Query: 236 HAWE 239 + Sbjct: 225 AGKQ 228 >UniRef50_Q4ZQ24 Response regulator receiver:Transcriptional regulatory protein, C-terminal n=9 Tax=Gammaproteobacteria RepID=Q4ZQ24_PSEU2 Length = 247 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 101/237 (42%), Positives = 145/237 (61%), Gaps = 7/237 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ VEDD + L + YL H ++V++E G A I+ E PDLV+LD+MLPG+DG + Sbjct: 9 HVLIVEDDQRLAELTSDYLQNHGLRVSIEGDGALAAARIIAEQPDLVILDLMLPGEDGFS 68 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 ICR +R ++ GPI++LT+ D +HI L+ GA D++ K P VLLAR++ LR++E Sbjct: 69 ICRSVRDRYDGPILMLTARTDDTDHIEGLDTGADDFVCKPVHPRVLLARIKALLRRSE-- 126 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + L FG L +D R L I L+ A+F+LLW L +AG+ + Sbjct: 127 -----APQVPAAELRRLVFGPLVVDNALREAWLREQSIELTGAEFDLLWLLVANAGRTLS 181 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 R+ + LRGV YDG DRS+DV ISR+R K+ D+ P IKTVR+KGYLF P A + Sbjct: 182 REEIFTALRGVGYDGQDRSIDVRISRIRPKIGDDPIHPRLIKTVRSKGYLFVPEAAQ 238 >UniRef50_Q8RBP2 Response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain n=3 Tax=Clostridia RepID=Q8RBP2_THETN Length = 224 Score = 312 bits (801), Expect = 6e-84, Method: Composition-based stats. Identities = 59/237 (24%), Positives = 114/237 (48%), Gaps = 15/237 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILREN-PDLVLLDIMLPGKD 59 M+ ++ +ED+ + ++ YL + QV G + + ++LLDIMLP Sbjct: 2 MHKVLVIEDEEGMRDILKTYLENNGYQVLTAENGKEGLDLFNENKDIKIILLDIMLPDIS 61 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G ++ + +R P++++T+ + + +L E+GA DY++K P ++AR++ L + Sbjct: 62 GWSLLKTIRETSKVPVMMITARGEEYDKLLGFELGADDYVVKPFSPREVVARVKAILSRT 121 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + + + +D +R VT+ +I L+ +F+LL L + G+ Sbjct: 122 YGSQDDGKT-----------EYQGIVMDVHSREVTVDGKKIELTPKEFDLLKLLLDNKGK 170 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 ++ R+ L + G + G R+VD I +LR+KL + + IKTV GY Sbjct: 171 VVSREKCLNEVWGYDFYGDLRTVDTHIKQLREKLGE---KRNLIKTVWGIGYKLEGD 224 >UniRef50_C6J108 Multi-component transcriptional regulator n=2 Tax=Bacillales RepID=C6J108_9BACL Length = 248 Score = 312 bits (800), Expect = 7e-84, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 109/234 (46%), Gaps = 7/234 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+D+ + +L+ YL + +V G++A E + D++LLD+MLP DG + Sbjct: 16 VLVVDDEWNMRNLLRIYLTREGFEVKEATNGNEALEMAANHHFDIILLDLMLPDMDGWQV 75 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 C+ +R K I++LT+ + + L +GA DY+ K P LLAR+ +R++ Sbjct: 76 CKKIREKDHVAILMLTARSETKDKVYGLGIGADDYLTKPFEPEELLARVYSLIRRSAITQ 135 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + + L F L I P R V + + + + +F+L LA + R Sbjct: 136 SIRRQEAA-------LEFPHLRILPEGREVIIHDHSVEFTQKEFDLFISLAKSEQRAFSR 188 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + L+ + G Y+G R VD I +R+K I+TV GY F Sbjct: 189 EELVNLIWGDEYEGEVRVVDTHIKNIREKTQKAGLGYNPIQTVWGVGYKFNGAG 242 >UniRef50_Q1DCL7 DNA-binding response regulator n=6 Tax=Cystobacterineae RepID=Q1DCL7_MYXXD Length = 232 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 114/234 (48%), Gaps = 9/234 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +I+ VEDD + + ++ L +V G L E+PDLV+LD+MLP +G Sbjct: 6 RSILVVEDDLSILTGLSMNLRFEGYEVLQAQDGRTGLARALDESPDLVVLDVMLPELNGF 65 Query: 62 TICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + ++LR + P+V+L++ + + I+ L +GA DY++K LLAR++ LR+ Sbjct: 66 EVLKELRQRGRDTPVVVLSAKGMETDKIVGLNLGADDYVVKPFGLQELLARIKAVLRRRY 125 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + FG +++D R V A T + L+ +F+LL H G+ Sbjct: 126 PSAGAGSPPP--------VTFGDVSVDMAARTVARARTPVELTAQEFKLLAHFLAHPGRT 177 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ LL G Y+G R+VD + +LR K + P TVR GY F Sbjct: 178 FTREELLSGAWGYHYEGSARTVDNFMRQLRLKFEPDPEAPRHFLTVRGLGYRFE 231 >UniRef50_UPI0001C42B3F two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C42B3F Length = 231 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 111/234 (47%), Gaps = 6/234 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M TI+ VED+ + L+ +L K + G++A + DL ++D+M+P DG Sbjct: 1 MPTILIVEDERTMQRLLTLHLTKEGFETITADHGEEAISLLSSHQIDLAVVDVMMPVMDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + LR + P++ LT+ + + I L +G DY+ K L+AR++ LR+ Sbjct: 61 FDFVKKLRETSTLPVIFLTARSDEKDRIEGLMLGGDDYLSKPFSKGELIARIQAVLRRTY 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 Q + + L + ++ R V + ISL+ +F+LL L H GQ+ Sbjct: 121 QRNRNI---IGHIDEREILSLEGIQLNRKARSVKVDQIPISLTVKEFDLLLFLFEHQGQV 177 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ LL ++ G+ Y+G +R+VD I LR KL I+TV GY Sbjct: 178 FTREHLLTSVWGLDYEGTERTVDTHIKTLRMKLKPYGN---VIQTVWGIGYKLV 228 >UniRef50_A6LXW1 Two component transcriptional regulator, winged helix family n=5 Tax=Firmicutes RepID=A6LXW1_CLOB8 Length = 238 Score = 312 bits (800), Expect = 8e-84, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 115/238 (48%), Gaps = 7/238 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ V+D+ ++ +I +YL K V G+Q E R NPDL++LD+MLP G Sbjct: 5 KKVLIVDDENKIVEVIKSYLEKEGAIVFEAYDGNQTLEVFERINPDLIVLDLMLPDMTGE 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 IC +R + PI++LT+ + + I L MGA DYI K P L+AR+ R+ Sbjct: 65 EICSIVRKRSRVPIIMLTAKIDEKSIISGLHMGADDYITKPFSPRELIARIYAIFRR--- 121 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + L+ + + L ID + + + I L++ +++L L + + Sbjct: 122 ----LNEEVVPLSNEISFNDNDLVIDMLKKEIRKNGENIGLTSRQYKILMTLLKYPNKTF 177 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 R+ L+ G YDG DR+VD + +R+K+ N +P I TV GY F E Sbjct: 178 TREELISTALGDDYDGYDRNVDTHVKNIRQKIETNPKDPQYIITVHGTGYRFGGEFNE 235 >UniRef50_UPI0001787D57 two component transcriptional regulator, winged helix family n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001787D57 Length = 228 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 112/234 (47%), Gaps = 11/234 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 NTI+ V+DD + L+ +L V ++A + ++LDIM+PG++G Sbjct: 5 NTILVVDDDQSIVELLRDFLENDSFHVKTACDAEEAWAIFQQHPIQCMVLDIMMPGQNGF 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +RA+ PI+ L++ D++ I L +G DYI+KT PA ++AR++ LR++ Sbjct: 65 ELCRRIRAESPVPILFLSARSDDVDKIRGLTLGGDDYIVKTASPAEIVARVKAVLRRSAT 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + L +G L ++ R V + + L+ +FELL A H + Sbjct: 125 RR---------PMEERVLDYGRLRLNLSTREVVVDGNNVVLTPKEFELLRVFAEHPRHVF 175 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 D LL G ++ V +SRLR+K+ + +P + V GY F Sbjct: 176 TYDQLLAKFW--DGVGDRHTIRVHLSRLREKIEADPNQPQFLVNVWGVGYRFEG 227 >UniRef50_Q88HA6 Transcriptional regulatory protein RstA, putative n=5 Tax=Pseudomonas RepID=Q88HA6_PSEPK Length = 279 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 107/240 (44%), Positives = 147/240 (61%), Gaps = 9/240 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I VEDD+ + LIA+YL ++D V V RGD + R+ PDLV+LD+MLPG DG Sbjct: 47 MPNIFLVEDDSALSELIASYLQRNDFHVQVIARGDHVLDEYRRQRPDLVILDLMLPGIDG 106 Query: 61 MTICRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + +CR LR + PI++LT+ D + +L LEMGA DY+ K P VLLAR+R LR++ Sbjct: 107 LQLCRLLRQESQTLPILMLTARDDSHDQVLGLEMGADDYVTKPCEPRVLLARVRTLLRRS 166 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + G L ID R V+ E+ LS+ ++ LL LA +AG+ Sbjct: 167 SVNEPRL--------DNDLILIGGLRIDLAERTVSWRGEEVELSSGEYNLLVVLARNAGE 218 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 +M+RD +L+ LRG+ ++G DRSVDVAIS+LR+K DNA E +IKTV KGYLF+ WE Sbjct: 219 VMNRDRILQQLRGIEFNGTDRSVDVAISKLRRKFDDNAGEARKIKTVWGKGYLFSRVEWE 278 >UniRef50_UPI0001C4272B hypothetical protein BpOF4_20304 n=2 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4272B Length = 231 Score = 311 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 117/235 (49%), Gaps = 10/235 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+D+ + +LI +L+K + G +A + + + L++LD+M+P DG Sbjct: 3 TKILIVDDEWNMRNLIRIHLSKQGYNIVEAVNGKEALKEMKCHSFQLIILDVMMPEMDGW 62 Query: 62 TICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C ++R + + PI++LT+ + + L++GA DY+ K P L+AR+ LR+ Sbjct: 63 EVCEEIRKENLALPILMLTARTETTDKVKGLDIGADDYLTKPFKPEELIARVNALLRRAV 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T+ Q LHF L +D + V + + + L+ +FELL L + Q+ Sbjct: 123 VNQTTQTKQ---------LHFHELKMDVDDHKVFVQDNPVHLTPKEFELLKLLLLNPKQV 173 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 +RD LL + GV + G +R+VD I +R KL I+TV GY Sbjct: 174 FNRDQLLLKIWGVDFLGDERTVDSHIKSIRLKLKKEGLSFTIIETVWGVGYKLKE 228 >UniRef50_A6TKQ5 Two component transcriptional regulator, winged helix family n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKQ5_ALKMQ Length = 236 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 77/236 (32%), Positives = 116/236 (49%), Gaps = 5/236 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VEDD + +I YL K V+ G A ET L+ DLVLLD+MLPG DG Sbjct: 4 KKILLVEDDENISKIIKLYLEKEGFVVSCCYDGIVACETFLKNKYDLVLLDLMLPGLDGY 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+ +R PI++LT+ + L +GA DY+ K LLAR+ LR+ EQ Sbjct: 64 QVCQKIRETSYTPIIMLTAKGDLEEKVKGLHIGADDYVTKPFEIHELLARIHAMLRRIEQ 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 +E + L + L D ++ L I++ + +LL L + Q+ Sbjct: 124 -----DHEEVNRKEGNRLEYDNLIFDIDAFIIYLNEDIINVPRREAQLLKYLMMYPNQVF 178 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R+ L++ + G ++G DR +D+ I RLRK+L + + IKTV GY F Sbjct: 179 KREELIEGIWGWDFEGEDRVIDLYIKRLRKRLKSKTKQSWSIKTVWGIGYKFEVEK 234 >UniRef50_B6BWN6 Two component transcriptional regulator, winged helix family n=1 Tax=beta proteobacterium KB13 RepID=B6BWN6_9PROT Length = 237 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 125/234 (53%), Gaps = 5/234 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 IV ++DD ++ LI YL + G ++ + + PDL++LD+MLP ++G+ Sbjct: 3 KKIVIIDDDRKIRDLIKQYLQDQGFDCSAGEHGKDLDKILQKATPDLIILDLMLPDENGL 62 Query: 62 TICRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 IC+ LR K PI++LT+ +++ I+ LEMGA DY+ K P LLAR+ R++E Sbjct: 63 DICKRLRVNKIKIPIIMLTAKGDEVDRIIGLEMGADDYLPKPFNPRELLARINSIFRRHE 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 ++ + K + F +P R + EI L++ +F LL +A Q Sbjct: 123 MELS----EKVNEVSGKTIQFDNFEFNPQERTLKKDKKEIDLTSGEFSLLKVFIENANQP 178 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + RD +++ +G D DRS+DV ISR+RK + ++ +P +KT GY+F Sbjct: 179 LSRDQIMQLAKGKELDVFDRSIDVQISRIRKLIEEDPNKPKYLKTKWGFGYVFE 232 >UniRef50_UPI0001C425A1 two component transcriptional regulator, winged helix family protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C425A1 Length = 233 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 70/244 (28%), Positives = 119/244 (48%), Gaps = 16/244 (6%) Query: 1 MNT----IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLP 56 M ++ +EDD + LI Y+ K V G+ E+ PD + LDIMLP Sbjct: 1 MKHKALSVLIIEDDPHIAELIQLYMEKLGYLTQVAYDGEAGLESYYETYPDFIFLDIMLP 60 Query: 57 GKDGMTICRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLH 115 DG +C+++R PI++LT + I L++GA DY++K P L+AR++ Sbjct: 61 KIDGWELCQEIRWDNKKIPIIMLTGKGESQDKIKGLDIGADDYVVKPFDPNELVARMKAV 120 Query: 116 LRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELAT 175 +R+ + + + L +D + EI++ + +LL+ LA+ Sbjct: 121 MRRADLLN----------DEDQVVSLLGLVVDKKEYKAAAGDKEITMPPKELDLLYYLAS 170 Query: 176 HAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + Q+ R LL + G +++G R++DV I R+R+KL + A+ + IKT+R GY F Sbjct: 171 YPNQVFTRQQLLDQIWGYAFEGDPRTIDVHIKRIREKLTEADAK-WTIKTIRGVGYKFLE 229 Query: 236 HAWE 239 E Sbjct: 230 KEHE 233 >UniRef50_A0Y0H8 DNA-binding response regulator n=1 Tax=Alteromonadales bacterium TW-7 RepID=A0Y0H8_9GAMM Length = 241 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 125/235 (53%), Gaps = 2/235 (0%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ VEDD E+G LI L ++ V + A + I + L+LLDI LP DG++ Sbjct: 5 KLLIVEDDREIGKLITTQLTSLNLHVDHVISAELALKKIAKHPYGLILLDINLPQMDGLS 64 Query: 63 ICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR ++ + + ++LLT+L SDM+ ++ LEMGA DYI K L AR++ LR Q Sbjct: 65 LCRKIKEHYPTTSVILLTALSSDMDRVIGLEMGADDYICKPFFARELQARVKTQLRHRAQ 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 ++ E S+ + L G+L I+ + V LA I+L+ +F+LL A H + Sbjct: 125 LLASQNTDEPSVASEQTLKVGSLNIEFDSHQVYLAEQAINLTATEFDLLVYFARHPNHVF 184 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R LL + G + G + +V+ I+RLR KL + + P I+TV GY P Sbjct: 185 SRQQLLDKVWGYQHSGYEHTVNSHINRLRAKLELHQSTP-IIETVWGVGYKLNPS 238 >UniRef50_Q47ZA2 DNA-binding response regulator n=20 Tax=Alteromonadales RepID=Q47ZA2_COLP3 Length = 238 Score = 310 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 102/237 (43%), Positives = 150/237 (63%), Gaps = 8/237 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VEDD ++ L+ +L V E RGD + + +PDL++LD+MLPGKDG Sbjct: 9 KKILLVEDDRQLSDLVTDFLTSEGFHVKQEFRGDTVAKRVKLFSPDLIILDVMLPGKDGF 68 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CRDLR +++GP+++LT+ +D + +L LE+GA DY++K P VLLAR+ LR+ + Sbjct: 69 GVCRDLRPEFNGPVLMLTAKSTDFDQVLGLEIGADDYVIKPVEPRVLLARVNALLRRGDL 128 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 ++ E + G L I+ +R VTL + + L++ +F+LLW LA AG++ Sbjct: 129 PNQSEEKGE--------ITCGGLYINKASRKVTLQDENVDLTSQEFDLLWLLAGKAGEVQ 180 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 +RD + K + G YDGLDRSVDV ISRLRKKL D+ P+RIKT+ +GYLF P AW Sbjct: 181 NRDYIYKAVIGREYDGLDRSVDVRISRLRKKLHDSTDTPFRIKTIWGQGYLFVPDAW 237 >UniRef50_C8VYB2 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VYB2_DESAS Length = 236 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 77/238 (32%), Positives = 116/238 (48%), Gaps = 8/238 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+D+ V ++ L + +V G+ A E NPDL++LD+++PG DG Sbjct: 1 MPNILVVDDEQNVLEIVRFNLERAGYKVITAKDGNIALELARSRNPDLIVLDLLMPGLDG 60 Query: 61 MTICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 +ICR L+ A PI++L++ +++ +L LEMGA DYI K P L+AR+ LR Sbjct: 61 YSICRLLQRDPATRRIPIIMLSARSDELDKVLGLEMGADDYITKPFSPRELVARVNARLR 120 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 ++++ + G L ID + L + L +FELL+ LA Sbjct: 121 RDKKEEFIIPR-----DSKNIIMRGKLIIDKECMSIELGGKKQYLKAKEFELLYFLACQP 175 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 G+ R LLK R+VDV I R+R+KL A I+T R GY F Sbjct: 176 GKYFSRYFLLKQFWEFDVSNDSRTVDVHIRRIRQKLEILNANQQYIETARGVGYRFIE 233 >UniRef50_B8IM29 Two component transcriptional regulator, winged helix family n=16 Tax=Proteobacteria RepID=B8IM29_METNO Length = 251 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 81/237 (34%), Positives = 137/237 (57%), Gaps = 7/237 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VEDD E+ L+A YL ++++V+V + + + DL++LD+MLPG+DG+ Sbjct: 18 PHILLVEDDREISQLVARYLRGNELRVSVAGDSREMDRLLADSRVDLIVLDLMLPGEDGL 77 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +ICR LRA+ + PI++LT+ +++ I+ LE+GA DY+ K P LLAR+R LR+ Sbjct: 78 SICRRLRAQSTMPILMLTAKSEEIDRIVGLELGADDYLAKPFNPRELLARIRAVLRR--- 134 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQI 180 G + L F +D R + +++L+ A+F+LL + G++ Sbjct: 135 ---GSGGSARDEDGVRRLGFAGFVLDAGLRQLLNPDGAQVALTAAEFDLLHAMCLRPGRV 191 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + RD LL +G + +RS+DV +SR+R+K+ ++ P IKT+R+ GY+F P Sbjct: 192 LSRDQLLDLTQGRAPGPFERSIDVLVSRIRQKIERDSRNPEMIKTIRSGGYVFTPEV 248 >UniRef50_A1SKV6 Response regulator receiver n=7 Tax=Bacteria RepID=A1SKV6_NOCSJ Length = 232 Score = 310 bits (796), Expect = 2e-83, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 122/238 (51%), Gaps = 12/238 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILR---ENPDLVLLDIMLPG 57 M I+ V+D+ + +++ YL V+ G A + E DLVLLD+M+PG Sbjct: 1 MTRILVVDDEPPIRTVLRGYLEAEGFVVSEAADGAAALAELRAGSAEPVDLVLLDVMMPG 60 Query: 58 KDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 DG+ + R LR ++L+T+ +++ ++ L +GA DY+ K P + AR++ LR Sbjct: 61 MDGLEVLRRLRTVADTYVILVTARSEEVDKLVGLGVGADDYVTKPFSPREVTARVKSVLR 120 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + T + L F LT+DPI R +T+ + L+ +F+LL L Sbjct: 121 RRRDGTTGDDPR---------LRFDELTVDPIGREITVDGAPVRLTALEFDLLHALVRAP 171 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 G++ R LL+ + G + G +R VDV I LR +L D+A +P+ I TVR GY F Sbjct: 172 GRVFSRAQLLEQVWGNDFYGDERVVDVHIRNLRAELGDDATDPHLIATVRGVGYKFIG 229 >UniRef50_A0PYF5 Two-component response regulator n=8 Tax=Firmicutes RepID=A0PYF5_CLONN Length = 234 Score = 310 bits (795), Expect = 3e-83, Method: Composition-based stats. Identities = 66/238 (27%), Positives = 118/238 (49%), Gaps = 7/238 (2%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 MN I+ +EDD E+ ++I ++L + + V G + E ++ DL++LDIMLP D Sbjct: 1 MNGKILVIEDDVEIANIIQSHLTRENYSVNWSSTGKEGLEDFKKDTYDLIILDIMLPEID 60 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G T+C+++R + PI++L++ +++ + L++GA DYI K L AR+ ++++ Sbjct: 61 GFTVCKNIRLLSNVPILILSAKKQEVDKVKGLKLGADDYITKPFSLIELEARVENNIKRY 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + LTI V + + EI L++ +F LL LA + + Sbjct: 121 KGYNKKTDDNSIWRYKN------GLTIIKDEMKVLIDDKEIELTSKEFSLLVVLAQNEHK 174 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + + L +N+ + ++ V + LR+KL DN P I+TV GY F Sbjct: 175 VFTKKELYENVWNQDNLEGNNTITVHVKGLRQKLKDNVKNPKYIQTVWGTGYKFIGEK 232 >UniRef50_C9YME3 Two-component response regulator n=32 Tax=Firmicutes RepID=C9YME3_CLODR Length = 247 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 7/237 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 MN I+ ++DD E+ +LI + +++ G + + + + LV+LD+M+PG DG Sbjct: 18 MNKILIIDDDKELCALIKRSVQAENIEADFCNTGKEGLQKLREQEYQLVVLDVMMPGMDG 77 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++R ++S PI++ TS + ++ + L GA DY+ K L+AR+ +R+ Sbjct: 78 FETLEEIRKEYSLPILMFTSKNDSISKVRGLRAGADDYLTKPFDMDELIARIASLIRRYT 137 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + G + L+F L ID NR T +N L +F+LL A H G+I Sbjct: 138 RFNQQAG-------AIQKLNFDGLQIDLENRSATTSNGTFELPPKEFDLLLYCAKHQGKI 190 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 + + + + + G Y D ++ ISRLRKKL N + P I+TV+ GY F Sbjct: 191 LTKQQIYEEVWGEEYFYDDSNIMAIISRLRKKLEVNPSSPKYIQTVKGIGYRFNKEV 247 >UniRef50_B2IIX2 Two component transcriptional regulator, winged helix family n=3 Tax=Proteobacteria RepID=B2IIX2_BEII9 Length = 237 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 86/236 (36%), Positives = 133/236 (56%), Gaps = 5/236 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ V+DD ++ SL+ + KH VT+ G + +E DLV+LD+ML G+DG Sbjct: 1 MPHLLLVDDDEDILSLLTTFFQKHTHTVTIAGNGAAMFAALEQETIDLVILDVMLQGEDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++C+ +RA P+++LT++ + ++ LE+GA DY+ K LLAR++ LR+ Sbjct: 61 FSLCQKMRAVSRVPVIMLTAMADHTDRVVGLEIGADDYLTKPFDQRELLARVKAVLRRTA 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTL-ANTEISLSTADFELLWELATHAGQ 179 + T ET L F +D R + N I LS +F+LL A H+ + Sbjct: 121 ELEATPTPSETRP----MLCFAGWRLDVARRELRSGDNALILLSGGEFDLLLAFAEHSQR 176 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 ++ RD LL RG+S+ DRS+DV +SRLR KL D+ +P I+TVRN GY+F P Sbjct: 177 VLTRDQLLDLARGLSHAAFDRSIDVQVSRLRHKLEDDPKKPSVIRTVRNGGYIFTP 232 >UniRef50_C8PVM6 Putative transcriptional regulator OmpR n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVM6_9GAMM Length = 245 Score = 309 bits (794), Expect = 4e-83, Method: Composition-based stats. Identities = 84/243 (34%), Positives = 130/243 (53%), Gaps = 16/243 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILR--ENPDLVLLDIMLPGKD 59 T++ +EDD ++ LI+ YL + +V P + ET+ ++ DLV+LD+MLP D Sbjct: 9 KTVLLIEDDPDLAELISEYLGMNYYEVQHAPTATEGLETLFNPAKSIDLVILDLMLPDMD 68 Query: 60 GMTICRDLRAKWS-----GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRL 114 GM +C+ +R I++LT+ + +L LEMGA DY+ K P LLAR+R Sbjct: 69 GMQVCQRIRQHKDSRLAQTAIIMLTAKGDTTDRVLGLEMGADDYVSKPFEPRELLARIRA 128 Query: 115 HLRQNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELA 174 +R+++ L FG L + P + VT+ + + L+T F+LL A Sbjct: 129 VMRRHDL--------PLHQQKEDNLVFGRLKVYPDSHEVTIDDEPVRLTTHQFQLLHYFA 180 Query: 175 THAGQIMDRDALLKNLRGVS-YDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 TH+G+++ R+ L + D +DR++DV ISRLR + DN +P RI TVR GY F Sbjct: 181 THSGKVLSREQLWHAMPNDDSSDNIDRAIDVHISRLRALIEDNPRQPKRIITVRGVGYQF 240 Query: 234 APH 236 A Sbjct: 241 ATD 243 >UniRef50_C9KL69 DNA-binding response regulator ArlR n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KL69_9FIRM Length = 230 Score = 309 bits (794), Expect = 5e-83, Method: Composition-based stats. Identities = 74/229 (32%), Positives = 111/229 (48%), Gaps = 8/229 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I VED+ + + L + +E G +A E I++ N DLVLLD+MLPG DGMT Sbjct: 6 RIFIVEDERRIARFLQIELEHEGFETEIEENGTRAYERIMQGNFDLVLLDVMLPGMDGMT 65 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 IC+ +R S PI++LT+ D + + L++GA DY+ K L+AR+R LR Sbjct: 66 ICKRVREVSSLPIIMLTAKDEVEDKVAGLDIGADDYMTKPFAIEELMARIRNALR----- 120 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + L L + P V + + L+ ++ LL + + ++ Sbjct: 121 --KHVPDNGGVPLEERLQVKNLVMYPKRYEVEVDGETVHLTKKEYSLLEYMMRNKRTVLT 178 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 RD +L+ + G Y G VDV I LR KL D+ I TVR GY Sbjct: 179 RDQILEKVWGYDYSGDTNVVDVYIRYLRAKL-DDRFHEKYIYTVRGVGY 226 >UniRef50_A6W7C9 Two component transcriptional regulator, winged helix family n=37 Tax=Actinobacteridae RepID=A6W7C9_KINRD Length = 254 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 6/235 (2%) Query: 6 FVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTICR 65 VED+ + +A L V G E R PD+V+LD+MLPG DG+ +CR Sbjct: 22 VVEDEPTIADAVARRLRAEGYTVETAGDGPSGVELCERVTPDVVVLDVMLPGFDGLEVCR 81 Query: 66 DLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQATLT 125 ++A P+++LT+ D + + ++ L +GA DY+ K L+AR+ +R+ E+A Sbjct: 82 RVQAARPVPVLMLTARDDETDKLVGLGVGADDYMTKPFSMRELVARVNGLVRRVERARAL 141 Query: 126 KGLQETSLTPYKA-LHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDRD 184 G S + + G L ID R V A TE+ L+ +F+LL LA ++ R+ Sbjct: 142 VGAPAPSAEAMRFPVSDGELEIDRAQRRVRRAGTEVHLTPTEFDLLVCLAESPRTVLTRE 201 Query: 185 ALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 LL+ + + R+VD + LR+KL + ++TV GY F P + Sbjct: 202 KLLEEVWDWADASGTRTVDSHVKALRRKLGAD-----LVRTVHGVGYAFEPGGVQ 251 >UniRef50_D0KWS3 Two component transcriptional regulator, winged helix family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KWS3_HALNC Length = 262 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 79/238 (33%), Positives = 128/238 (53%), Gaps = 7/238 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQA-EETILRENPDLVLLDIMLPGKDG 60 I+ V+DD + +L+ YL + V V G + DL++LDIMLPG+DG Sbjct: 15 PRILVVDDDPGIQTLLGRYLREQGFDVRVVGSGAEMDIALAADPRVDLLVLDIMLPGEDG 74 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++I R L K P+++L++ D++ I+ LE+GA DY+ K P LLAR+R LR+ Sbjct: 75 LSIARRLDPKTRPPVIMLSARGEDIDRIVGLEIGADDYVPKPFNPRELLARIRAVLRRQR 134 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 +G Q+ + + G IDP R L++ + L+ +++LL ++ Sbjct: 135 MEPDARGKQD------ERIRVGDFAIDPQTRQAFLSDGALDLTHGEWQLLQFFMERPNRV 188 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 ++RD ++ L+G DRS+DV I+RLR+K+ N EP + T+ +GYLFAP Sbjct: 189 INRDQIMDYLKGYERSAFDRSIDVRITRLRRKIETNPTEPRYLVTIWGEGYLFAPSGR 246 >UniRef50_D2LRZ5 Two component transcriptional regulator, winged helix family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LRZ5_BACS4 Length = 236 Score = 309 bits (793), Expect = 6e-83, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 115/234 (49%), Gaps = 10/234 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 T+ VED+ + ++ AYL K +V G + I NPD V+LD+MLP G Sbjct: 4 TVFIVEDEPMIIEVLKAYLEKSGYRVESAQNGKEGLTKIREGNPDFVILDLMLPDMPGEE 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 IC+ +R PI++L++ S+ + I + +GA DY+ K P ++ RL LR+ Sbjct: 64 ICKQIRLTSDVPIMMLSAKSSEEDRIGGIVIGADDYVTKPFSPREVIVRLEAILRRTRTL 123 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + + ID I + V L N ISL+ +F ++ +A H G++ Sbjct: 124 NKMEIFSFNKK---------EIIIDFIKKEVLLNNETISLTPIEFNIITIMAKHPGRVFS 174 Query: 183 RDALLKNLRGVSYD-GLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R LL+ ++ S+ G +RS+DV I LRKKL N +P I TV GY F Sbjct: 175 RADLLQKIQEDSFFEGYERSIDVHIKNLRKKLEVNTKQPKYILTVFGMGYKFGG 228 >UniRef50_P45606 Phosphate regulon transcriptional regulatory protein phoB n=201 Tax=Proteobacteria RepID=PHOB_SHIDY Length = 229 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 113/236 (47%), Gaps = 15/236 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VED+A + ++ L ++ Q D A + PDL+LLD MLPG G+ Sbjct: 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGI 62 Query: 62 TICRDLRAKW---SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 + L+ + P+V+LT+ + + + LE GA DYI K P L+AR++ +R+ Sbjct: 63 QFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 + + + + L++DP + V + + +F+LL TH Sbjct: 123 I-----------SPMAVEEVIEMQGLSLDPTSHRVMTGEEPLEMGPTEFKLLHFFMTHPE 171 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ R+ LL ++ G + DR+VDV I RLRK L ++TVR GY F+ Sbjct: 172 RVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEP-GGHDRMVQTVRGTGYRFS 226 >UniRef50_B8GBX2 Two component transcriptional regulator, winged helix family n=9 Tax=Chloroflexi RepID=B8GBX2_CHLAD Length = 247 Score = 309 bits (792), Expect = 7e-83, Method: Composition-based stats. Identities = 64/231 (27%), Positives = 113/231 (48%), Gaps = 8/231 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 ++ V+D+ + + + L M+VT G +A E + E PD+VLLD+M+P DG Sbjct: 9 VLVVDDEPRMIAFMRMNLELEGMRVTTATNGREAVEKVREEMPDIVLLDVMMPVMDGFEA 68 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 R +R+ P+++LT+ D + + + LE+GA DY+ K L++R+R LR++ Sbjct: 69 LRRIRSFSQVPVIILTAKDEEEDRVRGLELGADDYVGKPFSQRELISRIRAVLRRHYTQP 128 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 L+ID R V + ++L ++ LL+ L +AG ++ Sbjct: 129 PIPQTLVKVD--------DRLSIDFARREVLVDGKRVNLRPTEYRLLYHLVQNAGYVLTH 180 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + LL + G Y + + I+ LR+K+ ++ + P I T R GY F Sbjct: 181 EMLLSKVWGPEYRDESHYLRLYITYLRQKIEEDPSNPRYILTERGVGYRFV 231 >UniRef50_O34903 Uncharacterized transcriptional regulatory protein ykoG n=5 Tax=Bacillales RepID=YKOG_BACSU Length = 228 Score = 309 bits (792), Expect = 8e-83, Method: Composition-based stats. Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 11/230 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ VED+ ++ ++ L VT++ G + + LVLLD+MLPG G+ Sbjct: 5 HILIVEDEEKIARVLQLELEYEGYSVTIKHNGTEGLDAAAEGGYSLVLLDVMLPGLSGLE 64 Query: 63 ICRDLRAK-WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R LR P++LLT+ DS + + L++GA DY+ K LLAR+R LR Sbjct: 65 VLRRLRKTDSQTPVILLTARDSIPDKVTGLDIGANDYVTKPFEIEELLARIRAALR---- 120 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + L + L ++ R V + E+ L+ +F+LL + H Q++ Sbjct: 121 -----QNGTKTEDIGTFLTYDDLRVNEKTREVRRGDKEVELTPREFDLLVYMLKHPQQVL 175 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGY 231 R+ +L ++ G Y G VDV I +RKKL D E I T+R GY Sbjct: 176 TREQILSSVWGFDYIGDTNVVDVYIRYIRKKL-DYPYEKQLIHTIRGVGY 224 >UniRef50_A6VYK9 Two component transcriptional regulator, winged helix family n=2 Tax=Marinomonas RepID=A6VYK9_MARMS Length = 232 Score = 308 bits (791), Expect = 9e-83, Method: Composition-based stats. Identities = 77/236 (32%), Positives = 121/236 (51%), Gaps = 8/236 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ +DDA + LI Y +V G +A E + + PD+V+LD+M+P DG Sbjct: 1 MVKLLLADDDARLSDLIKEYFDGEGYEVAHAWNGREALELMAADMPDIVILDVMMPELDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + +R K S P+++LT+ D++ IL LEMGA DY+ K P LLAR++ LR+ Sbjct: 61 FETLKQIRNKSSVPVIMLTAKGDDIDRILGLEMGADDYLSKPFNPRELLARIKAILRRA- 119 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 QE P + + + +R V L + L+T+++ LL + GQ+ Sbjct: 120 -------SQEREDDPTADIDLSGVLLRRKDRTVYLEGELVELTTSEYTLLECMLMAPGQV 172 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 + + L + G DRS+D+ IS LRKK+ + RIKTVR GY+F + Sbjct: 173 LTKQELSEKALGRKLTMYDRSLDMHISNLRKKIGNLENGDPRIKTVRGVGYIFVSN 228 >UniRef50_Q1AXX7 Two component transcriptional regulator, winged helix family n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AXX7_RUBXD Length = 231 Score = 308 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 113/233 (48%), Gaps = 9/233 (3%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 M I+ V+DDA + + + L +V G +A ET+ RE PDLV+LDIM+P Sbjct: 1 MKEKILLVDDDAALLEVTSILLVSEGYEVLAAEDGIEALETLDREEPDLVVLDIMMPRLS 60 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G + + +R + P++LLT+ ++ ++ LE+GA DYI K LLAR++ L Sbjct: 61 GFEVLKKIRERSDVPVILLTAKSQSVDKVVGLELGADDYITKPFDTKELLARIKAIL--- 117 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + + L G L +D VT + L+ +F++L L GQ Sbjct: 118 -----RRLGRREGGRRDGVLRLGPLEMDTNAYTVTRDGEPLDLTPTEFKILALLLRRPGQ 172 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 R + + + S+ R +DV ISRLR K+ + + P I+TV + GY Sbjct: 173 AFTRAQISEAVSTGSHYLASRYIDVHISRLRSKIERDPSRPEIIQTVPSVGYR 225 >UniRef50_C8WP93 Two component transcriptional regulator, winged helix family n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WP93_EGGLE Length = 235 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 64/240 (26%), Positives = 115/240 (47%), Gaps = 7/240 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ ++D+ + L+ + G + RE PDLV++D+M+P DG Sbjct: 1 MKKILLIDDENSIARLVGSMAGDAGYAFAYAEDGAEGLVVAEREAPDLVIMDVMMPRMDG 60 Query: 61 MTICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 T CR +R + + P++ L++ ++ + + G DY++K P LL + HLR+ Sbjct: 61 FTTCRLMRERGITCPVIFLSAKGDIVDKGVGFQAGGDDYMVKPFDPRELLMHIEAHLRRA 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 A + LH G +D VT +SL+ +F++ + LA+ G Sbjct: 121 SMAAAPVAPR------GDILHAGRFVLDRGQFRVTKDGERLSLTPKEFKIFFALASSPGL 174 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 ++ ++ L++ G + G S+ V I +LR+K+ D+ ++P I+TV GY F P E Sbjct: 175 VLSKEQLVEAAWGKEFVGETSSITVFIKKLREKVEDDPSDPRVIQTVWGIGYRFEPEGRE 234 >UniRef50_C0C3P9 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C3P9_9CLOT Length = 241 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 115/234 (49%), Gaps = 15/234 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ VED+ + +I Y+ + G A + DL++LD+M+P DG Sbjct: 20 MANVLIVEDEKNMQDIIVEYMRRGGHTCFTADDGVDALMILKSNPMDLMILDVMMPHLDG 79 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 ++C+ R + PI++LT+ + + + E GA DY+ K P VLLA+ LR++ Sbjct: 80 FSVCKLAREMSNMPIIMLTAKGGEDDKLKGYEYGADDYMTKPFSPKVLLAKANALLRRS- 138 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 S P AL+ G + + P + V + EI+L+ ++ELL+ L + GQI Sbjct: 139 -----------SPAPLDALNVGKIMVIPSSHKVFIDGQEITLTHKEYELLYFLMVNPGQI 187 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 RD LL + G ++G R+VD I LR+KL D I T+ GY F Sbjct: 188 FARDQLLNRIWGYDFEGTTRTVDTHIKTLRQKLGDEG---KHIVTLIRSGYKFE 238 >UniRef50_Q38WB3 Two component system, response regulator n=58 Tax=Firmicutes RepID=Q38WB3_LACSS Length = 246 Score = 307 bits (789), Expect = 1e-82, Method: Composition-based stats. Identities = 70/243 (28%), Positives = 118/243 (48%), Gaps = 10/243 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILREN--PDLVLLDIMLPGKDG 60 I+ VED+ V ++ + K G++A E + D++ LD+ LPG DG Sbjct: 2 KILMVEDNKSVSEMMGMFFQKEAWDAHFAYDGNEAVEQFSVDPDSWDIITLDLNLPGMDG 61 Query: 61 MTICRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 M + + +R + PI++LT+ DS+ + +L LE+GA DY+ K P L+AR++ R+ Sbjct: 62 MQVAQKIREQSKVVPIIMLTARDSESDQVLGLELGADDYVTKPFSPITLIARIKALHRRA 121 Query: 120 EQATLTKGLQETSLTPYK----ALHFGTLTIDPINRVVTLANTEI-SLSTADFELLWELA 174 E G ++ + + + R L + I L+ +F+LL LA Sbjct: 122 ELVDEQVGAEDAQVEEVDNSDYDVQTDHFKMSSKTREAYLMDEPILDLTPKEFDLLKTLA 181 Query: 175 THAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + Q+ R+ LL+ + Y G +R+VD I +LR+K+ + P I+TV GY F Sbjct: 182 KNPRQVFSREQLLELVWDYQYFGDERTVDAHIKKLRQKIEEVG--PQVIQTVWGVGYKFD 239 Query: 235 PHA 237 A Sbjct: 240 DSA 242 >UniRef50_Q47YY9 DNA-binding response regulator BaeR n=9 Tax=Bacteria RepID=Q47YY9_COLP3 Length = 232 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 128/234 (54%), Gaps = 4/234 (1%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M+ I+ VED+ ++ SL+A YLAK Q T+ G + T+ ++ DL+LLD+MLPGKDG Sbjct: 1 MSHILIVEDEEKIASLLADYLAKAGYQTTIMHEGTEVVSTVKNQHFDLILLDLMLPGKDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +TICR+++ + I+++T+ +++ +L LE+GA DYI K P ++AR++ LR+ Sbjct: 61 LTICREIQEFSNIAIIMVTARVDEIDRLLGLELGADDYICKPFSPREVVARVKTILRRIN 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T + T+ ++ N T+ + L+ +F LL LA+ G+I Sbjct: 121 PPLTTGINTNIAKQSQTT----TVELNTDNYQATINQHPVELTAIEFNLLNILASAPGRI 176 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R L+ + + +R++D I +LRKKL ++ +++V + GY Sbjct: 177 YSRSQLIDRVYQDNRVVSERTIDSHIKKLRKKLNAIESDNELVQSVYSVGYKLV 230 >UniRef50_Q04N97 Response regulator n=6 Tax=Leptospira RepID=Q04N97_LEPBJ Length = 241 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 73/237 (30%), Positives = 135/237 (56%), Gaps = 5/237 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M TI+ +EDD ++G+LI L T++ G++ + +PD+V+LD+ LP DG Sbjct: 1 MKTILVIEDDPDIGNLIRKSLDSAHYSTTLQTSGEEGLKFYKANHPDMVILDLSLPDIDG 60 Query: 61 MTICRDLRA-KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + +CR +R + PI ++T+ + +++ I+ LE+GA DYI K L R+ + R+ Sbjct: 61 IEVCRTVRRNDENTPIFIVTARNEEIDRIMGLELGADDYITKPFSVRELKTRVDVFFRRW 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 ++ G++ + + G L IDP+ R VTL + +++S +F++L +A G+ Sbjct: 121 DK---KAGIKPNVGASGEIIR-GALKIDPVRRRVTLKDNIVNISRKEFDILQLMAASPGK 176 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 + R+ +L+ + G+ +DG +R +D + R+R KL N+A+P I+T+ GY F + Sbjct: 177 VFSREMILEAVWGMEWDGFERMIDSHVKRIRSKLEKNSAQPEWIETIWGIGYRFTDN 233 >UniRef50_C4WPH5 Two component response regulator n=3 Tax=Rhizobiales RepID=C4WPH5_9RHIZ Length = 314 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 83/236 (35%), Positives = 132/236 (55%), Gaps = 7/236 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ V+DD ++ L+ +L + M+V++ G++ + + R DL++LD+MLPGK G+ Sbjct: 82 HVLIVDDDKDIRDLLHEFLKRRGMRVSIAHDGEEMHDVMSRTAVDLIILDVMLPGKSGIE 141 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 IC+D+R PI++LT++ + IL LE+GA DY+ K P LLAR+R LR+ E Sbjct: 142 ICQDIRRHSRVPIIMLTAIADAADKILGLEIGADDYLAKPFDPRELLARIRAVLRRLE-- 199 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQIM 181 + S + F T+D R +T ++ + L+TA+F LL + I+ Sbjct: 200 ----NNRAPSRPVTHSYRFAGWTLDCARRRLTSPSDVRVELTTAEFNLLEAFVKSSQHIL 255 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 RD L++ + G DRSVD+ ISRLR+KL D++ P I T+RN GY F Sbjct: 256 SRDQLMEMAGNQAVYGYDRSVDILISRLRRKLNDDSRSPKLILTIRNGGYQFGHEV 311 >UniRef50_Q82EB1 Transcriptional regulatory protein cseB n=29 Tax=Actinobacteria (class) RepID=CSEB_STRAW Length = 235 Score = 307 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 121/234 (51%), Gaps = 7/234 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++FVEDD + L + VT P G E PD+ LLD+M+PG DG+ Sbjct: 5 THVLFVEDDDVIREATQLALERDGFAVTAMPDGLSGLEAFRANRPDIALLDVMVPGLDGV 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ--N 119 ++CR +R + + P+++L++ ++ +L LE GA DY+ K AVL+AR+R LR+ + Sbjct: 65 SLCRRIRDESTVPVIMLSARADSIDVVLGLEAGADDYVTKPFDGAVLVARIRAVLRRFGH 124 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 ++ +++S L FG L ID V + ++L+ + LL E ++ G Sbjct: 125 ASGPNSRPAEDSSAPDGGVLTFGELEIDTEGMEVRRSGQPVALTPTEMRLLLEFSSAPGT 184 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ RD LL+ + + G R VDV + RLR K+ + RI TVR GY Sbjct: 185 VLSRDKLLERVWDYGWGGDTRVVDVHVQRLRTKIGQD-----RIDTVRGFGYKL 233 >UniRef50_B9XEM3 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XEM3_9BACT Length = 226 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 114/236 (48%), Gaps = 11/236 (4%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ +ED+ + + + L +V G++ + ++ E PDLVLLD+M+P DG Sbjct: 1 MARILIIEDEVPMRTALKDCLEGEGYRVITAADGEEGLKRVMAEKPDLVLLDVMMPKLDG 60 Query: 61 MTICRDLRAKWS-GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 +C +LR + PI++LT+ + + L+ GA DY++K LLAR+R LR++ Sbjct: 61 FALCAELRRLANPVPILMLTAKGQIEDRVTGLDAGADDYLVKPFSTDELLARVRAMLRRH 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 ++ L FG + ID + + ++ + ++ +L L+ G+ Sbjct: 121 QREKRAVA----------TLRFGEVEIDMVKQTARRGRKDLHFTAKEYAMLRLLSEAPGE 170 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + R+ L + G + R+VD I+ LR K+ + +P IKTV GY Sbjct: 171 PISRERFLDVVWGYAAFPTTRTVDNHIASLRAKIESDPEKPRWIKTVHGVGYRLEG 226 >UniRef50_A7GEN9 DNA-binding response regulator n=18 Tax=Firmicutes RepID=A7GEN9_CLOBL Length = 229 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 10/235 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+ ++ S + Y V G +A E ++ D++LLDIM+P DG Sbjct: 4 KILIVDDEDDIVSFMKDYFEDQGYGVITASNGREAIEYCDKD-IDIILLDIMMPNIDGFQ 62 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C+ +R K S PI+ L++ S+++ I L +G DYI+K L AR++ HLR+ ++ Sbjct: 63 VCQKIRDKVSCPIIFLSARQSEIDKIKGLSVGGDDYIVKPFSIKELKARVQAHLRREKR- 121 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 L + FG LT+D +R V EI + +F+++ LA H Q+ Sbjct: 122 --------IPLNNRSKISFGKLTLDINSRKVHYEEEEILFTAKEFDIVELLALHPEQVFS 173 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 ++ + + + G +G +V I ++R K + A I TV GY + + Sbjct: 174 KEQIYEKVWGYDAEGDANTVAEHIKKIRAKFIKRNASLNHIATVWGVGYRWEINK 228 >UniRef50_A4J2J4 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J2J4_DESRM Length = 223 Score = 307 bits (788), Expect = 2e-82, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 15/235 (6%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ ++DD ++ +++ L +V V G + P+L++LDIMLPG DG Sbjct: 4 RVLVIDDDPKITAMLQRALTYEGYRVEVANDGYKGMNMAKENPPELLILDIMLPGLDGWE 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 IC+ R PI++L++ D + + L +GA DY+ K LLAR++ LR+ Sbjct: 64 ICQRFRKDNFTPILILSARDEVESKVKGLNLGADDYLGKPFALEELLARVQALLRRR--- 120 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 +T K + F L +D R V A ++L++ +F+LL H Q++ Sbjct: 121 ----------ITANKVIQFSDLKMDLEAREVRRAGNLLTLTSREFDLLAHFMHHPNQVLT 170 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R+ ++ + G+ + G ++V I+ LR+K+ D + I TVR GY+ Sbjct: 171 REQIIDRVWGLDFTGGSNVLEVYINMLRQKIEDYGS--RIIHTVRGVGYVLKEQG 223 >UniRef50_B6WUI4 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WUI4_9DELT Length = 254 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 83/238 (34%), Positives = 125/238 (52%), Gaps = 7/238 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 +TI V+DD E+ SL++ YL ++ + E R L+++DIMLPG +G+ Sbjct: 5 HTICIVDDDEEIRSLLSDYLRRNGFSTCTAGNATEFLEIQRRVPCSLIVMDIMLPGMNGL 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R+LRA+ + P++ LT+L + I+ LE+GA DY+ K P LLAR+R LR+ E Sbjct: 65 ELFRNLRAESTVPVIFLTALGDITDRIVGLELGADDYLSKPFEPRELLARIRTVLRRTEG 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDP-INRVVTLANTEISLSTADFELLWELATHAGQI 180 + T L F +D +V +SLS ++ LL + ++ Sbjct: 125 GARRDQPETTP------LQFAGWLLDRSARHLVAPDGVVVSLSGTEYRLLEIFLQNPQRV 178 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 + RD LL+ +G + DRS+DV ISRLR +L DN EP IKTVR GY+ A Sbjct: 179 LSRDELLERTQGRNAVPYDRSIDVQISRLRTRLRDNGREPQLIKTVRGDGYVLATDVR 236 >UniRef50_D0SP77 Phosphate regulon transcriptional regulatory protein PhoB n=1 Tax=Acinetobacter junii SH205 RepID=D0SP77_ACIJU Length = 240 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 111/234 (47%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VED+A + + L + V+ G QA + + + D ++LD+ LP ++G Sbjct: 5 KQILCVEDEAAIILPLRYALEREGWNVSWANTGAQALQYLSEQAFDFIILDVGLPDQNGF 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+ LR K+ P++ LT+ D +++ ++ LE+GA DY K ++AR++ R+ E Sbjct: 65 EVCKQLRQKYQTPLLFLTARDDEIDRVVGLEIGADDYCTKPFSAREIVARIKAIWRRMEI 124 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 Q + L T T +P + + + L+ ++ LL+ L H ++ Sbjct: 125 QAQNISSQPSISKVEIPLQSATWTCNPQSLQIQYHGQILQLTRYEYRLLFLLIQHPEKVF 184 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R L+ ++ L+R+VD I LR+KL + I+T R GY Sbjct: 185 SRQQLMDHIWEHPEHSLERTVDTHIKSLRQKLKQITPDDDPIRTHRGFGYSLVK 238 >UniRef50_A5G0J5 Two component transcriptional regulator, winged helix family n=36 Tax=Proteobacteria RepID=A5G0J5_ACICJ Length = 262 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 124/235 (52%), Gaps = 6/235 (2%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ V+DD E+ L+A +L + +VT +A L + LV+LD+MLPG+ G Sbjct: 27 MPHILVVDDDREIRELLARFLERQRFRVTAVRDAREARRAYLNGHYQLVVLDLMLPGESG 86 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + R LR + PI++LT+L + + I+ LE+GA DY+ K P L+AR+R LR+ Sbjct: 87 IDFARWLRGESQVPIIMLTALGEEPDRIIGLELGADDYVTKPFNPRELVARIRAVLRRV- 145 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQ 179 + + + F ++ R + E+ L+ +++LL L + Sbjct: 146 ----GENETPGRESSARLYRFAGWVLETSRRRLLDPHGVEVPLTGGEYDLLLALLDRPNR 201 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ RD LL LRG DR++DVAISRLR+KL D+ IKTVR GY+ A Sbjct: 202 VLTRDMLLDLLRGRQAGPFDRAIDVAISRLRRKLEDDGRHAQIIKTVRGGGYVLA 256 >UniRef50_Q04VZ3 Response regulator n=6 Tax=Leptospira RepID=Q04VZ3_LEPBJ Length = 234 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 122/234 (52%), Gaps = 10/234 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ V+D+ ++ LI +L ++ QV G + + + PDLV+LD+MLPG GM Sbjct: 10 QKVLVVDDEEDIAELIRFHLEENGYQVDTCQNGLEVLPKLEKNTPDLVILDLMLPGIGGM 69 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+ ++ K+S PI+++T+ + +L LE+GA DY+ K L+AR+R LR+ ++ Sbjct: 70 DLCKKIKEKYSMPIIMVTAKSGETEAVLGLELGADDYVRKPFSTRELIARVRSVLRRTKE 129 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + + G + ++ + N E+ L+ ++++L T+ G Sbjct: 130 GEEEEQFEGN-------ITIGNIFLNLKAHKAFINNFEVDLTLIEYKILNLFMTNPGVAF 182 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 RD LL + G DR+VDV I RLR KL D E R++T+R GY F Sbjct: 183 TRDKLLDRVWGKDIYVTDRAVDVNIKRLRDKLGD---EKERLETIRGIGYRFNE 233 >UniRef50_B2GF54 Two-component response regulator n=14 Tax=Lactobacillus RepID=B2GF54_LACF3 Length = 229 Score = 306 bits (786), Expect = 3e-82, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 12/233 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPD--LVLLDIMLPGKDG 60 I+ V+DD E+ L+ Y + G A + PD LV+LD+M+P +G Sbjct: 2 KILIVDDDKEIVQLLEIYARNEGYEPLTAYNGKDAITKL-NTMPDISLVILDLMMPEMNG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 M + R +R S PI++L++ +DM+ I L GA DY+ K P ++AR++ LR++E Sbjct: 61 MDVIRQVRKDSSIPILVLSAKTADMDKIQGLVTGADDYVTKPFNPLEVMARVKSLLRRSE 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVV-TLANTEISLSTADFELLWELATHAGQ 179 + + L+ G L I+ + V TL I L+ +F +L+ LA+H + Sbjct: 121 --------NQVTNDKPDVLNVGPLVINKDSHEVKTLKGDPIQLTALEFGILYLLASHPNR 172 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + D + + + ++V V +S LR K+ I+TV GY Sbjct: 173 VFSADDIFERVWQQESVVSAKTVMVHVSHLRDKIEAATGGEKVIETVWGVGYK 225 >UniRef50_C7LSY9 Two component transcriptional regulator, winged helix family n=2 Tax=Desulfovibrionales RepID=C7LSY9_DESBD Length = 231 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 69/238 (28%), Positives = 115/238 (48%), Gaps = 16/238 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 + IV +ED+ ++ +L+A +L V G + + + E PDLVLLD+MLPG G Sbjct: 3 HKIVVIEDEPDIANLLAFHLKSGGYDCFVARDGKKGLQLVQSERPDLVLLDLMLPGMSGT 62 Query: 62 TICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 +C+ ++ PI++LT+ +++ IL E+GA DY++K P L+ R++ LR+ Sbjct: 63 DVCKAVKGSPECAHIPIIMLTARGDEVDRILGFELGADDYVIKPFSPRELMLRIKTVLRR 122 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 N + L D + + + L+ +F L E + G Sbjct: 123 NVNILPKVAHWQR----------DGLAADFEAYTLLVDGVDAHLTPTEFNLFGEFVRNEG 172 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 +++ R+ LL N G ++G R+VD + RLRKKL A ++TVR GY Sbjct: 173 KVLSREQLLSNAWGYEFEGYSRTVDTHVRRLRKKLGPYAD---WLETVRGIGYRMKRE 227 >UniRef50_B0G2J4 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G2J4_9FIRM Length = 257 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 65/255 (25%), Positives = 111/255 (43%), Gaps = 23/255 (9%) Query: 1 MNT--IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGK 58 M+ I+ V+D+ E+ +I L +V+ G QA I +++ DL++LDIM+PG Sbjct: 1 MDKTCILIVDDNPEIREIINVLLGGEGFEVSEAENGAQALTLIEQQDFDLIILDIMMPGP 60 Query: 59 DGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 +G CR +R + PI+ L++ + + L G DY+ K L++R + +R+ Sbjct: 61 NGYQTCRKIRELSNAPILFLSARTKESDKTLGFSSGGDDYLAKPFSYNELISRSKALIRR 120 Query: 119 NE--------------------QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANT 158 + A S + ++ L F L I+ R V Sbjct: 121 YQVYKGKNESGNQSINSASVNPTAEPIASTSNASDSRHRILLFHDLEINQTVREVHKNGQ 180 Query: 159 EISLSTADFELLWELATHAGQIMDRDALLKNLRGVS-YDGLDRSVDVAISRLRKKLLDNA 217 + L+ ++ +L L + Q L +++ Y G + +V V I LR K+ D+ Sbjct: 181 LLDLTETEYSMLELLVANRHQTFSAQRLFESVWQEPYYYGANNTVTVHIRNLRSKVEDHP 240 Query: 218 AEPYRIKTVRNKGYL 232 P IKTV KGY Sbjct: 241 GNPELIKTVWGKGYR 255 >UniRef50_Q1GXN5 Two component transcriptional regulator, winged helix family n=1 Tax=Methylobacillus flagellatus KT RepID=Q1GXN5_METFK Length = 241 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 76/238 (31%), Positives = 130/238 (54%), Gaps = 5/238 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 N I+ V+DD E+ L+ YL V+ G + + +E +L++LD+MLPG+DG+ Sbjct: 5 NHILVVDDDHEIRELLTDYLRDAGFHVSEAANGREMWRVVNKEPVNLIVLDLMLPGEDGL 64 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ++CR++RA+ PI++LT+ + ++ I+ LE+GA DY+ K P LLAR+++ LR+ Sbjct: 65 SLCREVRAQGDLPIIMLTAKGTLVDRIIGLEVGADDYLPKPFDPRELLARIKVILRRTR- 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQI 180 + + + F +D R + +SL ++D+ +L L H + Sbjct: 124 ---NDRNKAAVADEFSYISFEGWRLDTHARQMFSPEGVVVSLGSSDYMVLRALLEHPNRP 180 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 + RD L++++ G +DRS+DV ISRLR + + P I+TVRN GY+ A Sbjct: 181 LSRDFLVEHVYGKESHAMDRSIDVCISRLRHHIEADTRNPTIIRTVRNAGYMLASQVK 238 >UniRef50_Q3KAS5 Two-component system, response regulator n=2 Tax=Proteobacteria RepID=Q3KAS5_PSEPF Length = 235 Score = 306 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 112/237 (47%), Positives = 149/237 (62%), Gaps = 10/237 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 ++ VEDD + +LIA +L +H +V RGD A L P +V+LD+MLPG+ G+ Sbjct: 8 RVLLVEDDERLAALIAHFLEQHGYEVRTVHRGDLAVAAFLEFKPKVVVLDLMLPGQSGLH 67 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR++R+ PIV+LT+ + D++HIL LE GA DY++K P VLLARLR R+ Sbjct: 68 VCREIRSVSDTPIVILTAKEDDLDHILGLESGADDYVIKPIKPPVLLARLRALQRR---- 123 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 Q +L FG L ID R V LA I L+T +FELLW LA+ AG+I+ Sbjct: 124 ------QVPDSGVVSSLEFGNLIIDRSCREVRLAGELIELTTMEFELLWLLASAAGKILS 177 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 RD +L +RG+++DGL+RSVDV IS+LR KL DN EP IKTV KGYLF P AWE Sbjct: 178 RDDILNRMRGIAFDGLNRSVDVYISKLRNKLKDNPREPVCIKTVWGKGYLFNPFAWE 234 >UniRef50_Q7NGM9 Two-component response regulator n=1 Tax=Gloeobacter violaceus RepID=Q7NGM9_GLOVI Length = 229 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 116/236 (49%), Gaps = 13/236 (5%) Query: 1 MNT-IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 MN I+ VEDD + ++ L VT+ G A E L++LD+MLP Sbjct: 1 MNNPILVVEDDETLAQVLRKTLESEGYTVTLARDGRAALELGREPGLQLIILDLMLPRMS 60 Query: 60 GMTICRDLRAKWSG-PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 G+ +C+ LR++ PI++LT+ D + + L +GA DY+ K LLAR+ LR+ Sbjct: 61 GLEVCQRLRSENVVTPIIMLTARGLDTDKVFGLRLGADDYLSKPFNIDELLARIEAVLRR 120 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 Q+ ++ + G L ID V ++ LS+ +F++L L AG Sbjct: 121 THQSKPSQH-----------VSVGDLEIDFQRLSVCKNRQKLDLSSREFQVLECLFRSAG 169 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 Q +DR+ + + + G +R++D I+RLR KL DN EP I TV GY F Sbjct: 170 QTVDREKIYQEVWGYDTAVTNRTIDFHIARLRSKLEDNPKEPRYILTVHGSGYRFV 225 >UniRef50_Q01RV3 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q01RV3_SOLUE Length = 235 Score = 306 bits (785), Expect = 4e-82, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 13/236 (5%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M TI+ ++DD + I L + + G E + PDLVL+D+ LPG G Sbjct: 12 MQTILVIDDDESLRDTIVVMLEQEGFRAVQAGDGRDGFEKAITTKPDLVLVDLRLPGMSG 71 Query: 61 MTICRDLRA-KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 IC+ LRA + + PI++L+++D +++ +L LE+GA DY++K L AR+R LR+ Sbjct: 72 TEICKQLRAARVATPIIVLSAMDDELDKVLLLEIGADDYVVKPFGTRELTARIRAVLRRA 131 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 S K +HF + +D RVV ++ L+ A++ LL + + Sbjct: 132 ------------STDARKVMHFSEVEVDFERRVVKRKGEDLKLTPAEYNLLTYFLHNPDR 179 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + RD +L ++ G + R+VD + +LR+KL + P TV GY F P Sbjct: 180 PLTRDMILNSVWGYEFFPNTRTVDAHVVKLRQKLEPDPNTPKHFLTVHGVGYRFIP 235 >UniRef50_Q01T10 Two component transcriptional regulator, winged helix family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T10_SOLUE Length = 237 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 80/238 (33%), Positives = 122/238 (51%), Gaps = 16/238 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M I+ +EDDA++ SL+ L K ++ + G A E + PDL+LLDIMLP DG Sbjct: 6 MKKILLIEDDADLFSLLKYNLEKEGFSLSGQHTGKGAIELCRQVRPDLILLDIMLPDSDG 65 Query: 61 MTICRDLRAKWS---GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 + IC+ +R P++ LT+ S+ + I+ LE+GA DY++K L+AR++L R Sbjct: 66 LDICKGIRKDPDLAAIPVIFLTARASETDRIVGLELGANDYVVKPFFVRELIARIKLQFR 125 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 TP + L G + +D + V L ++L+ +F LL L Sbjct: 126 -------------NQATPARLLEAGGVELDRTSCQVRLNGVPLALTATEFRLLEFLMNRP 172 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 G + R+ LL + G DR+VDV + RLR+K+ + A P I +VR GY F P Sbjct: 173 GVVFSREQLLNAVWGQDRAITDRAVDVYVLRLRQKVEKDPASPILIHSVRGFGYTFEP 230 >UniRef50_C6HUL5 Two component transcriptional regulator, winged helix family n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HUL5_9BACT Length = 232 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 79/240 (32%), Positives = 125/240 (52%), Gaps = 16/240 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ +EDD ++ LI YL + G R PD +LLD+MLPG DG+ Sbjct: 3 KKILMIEDDPDIAGLIHHYLKMEGFECEHVSDGTAGLSLARRLKPDAILLDLMLPGIDGL 62 Query: 62 TICRDLRAK---WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 T+ R ++ + P+V++T+ + + ++ LEMGA DYI+K P ++AR++ LR+ Sbjct: 63 TVNRLIKQDPAISATPVVIVTAKGEETDRVVGLEMGADDYIVKPFHPKEMVARVKAVLRR 122 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 +ET + + G +TID T L+ +F+LL L AG Sbjct: 123 ----------RETQQRLTERMSIGPVTIDIGRHEATFEGIPAPLTAKEFDLLVALMRVAG 172 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 +++DR+ LL + G Y+G DR+VDV I RLRKK+ ++AA ++TV+ GY F Sbjct: 173 RVLDRETLLNTVWGDDYEGTDRTVDVHIRRLRKKMGESAA---WVETVKQIGYRFREEGK 229 >UniRef50_C7T954 Two-component response regulator n=10 Tax=Lactobacillus RepID=C7T954_LACRG Length = 228 Score = 305 bits (784), Expect = 5e-82, Method: Composition-based stats. Identities = 62/232 (26%), Positives = 114/232 (49%), Gaps = 10/232 (4%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILREN-PDLVLLDIMLPGKDGM 61 I+ V+DD E+ L++ Y+ + G +A ++ L++LDIM+P GM Sbjct: 2 KILIVDDDKEIVELLSIYVKNEGYEPIQAYSGKEAITKLVTNPDIALMILDIMMPNMSGM 61 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + +++R PI+++++ +DM+ I L GA DY+ K P ++AR++ LR+++ Sbjct: 62 DVVKEVRKDSQIPIIIVSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQ- 120 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVV-TLANTEISLSTADFELLWELATHAGQI 180 E + + L G LTI + V TL +I L+ +F +L+ LA+H ++ Sbjct: 121 -------NEVTNSEPDVLEVGPLTIKKDSHEVTTLTGKQIQLTALEFGILYLLASHPNRV 173 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 D + + + ++V V +S LR K+ + I+TV GY Sbjct: 174 FSADEIFERVWQQESIVSAKTVMVHVSHLRDKIEEATDGEKVIETVWGVGYK 225 >UniRef50_C6CSH8 Two component transcriptional regulator, winged helix family n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CSH8_PAESJ Length = 240 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 116/236 (49%), Gaps = 2/236 (0%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ +EDD + +++ YL++ V G++ + PD+VLLD+MLP DG Sbjct: 1 MYKVLVIEDDVMMRDMLSMYLSEEGYSVRQAGTGEEGLRIVQEFAPDVVLLDLMLPDMDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 M +C +R + PI++L+ + AL+ GA DY+ K + AR+ +R+++ Sbjct: 61 MGVCASIRERSHVPIMILSMKSEVSERVQALKAGADDYMCKPFSMHEMTARVEALIRRSQ 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + S L + +D R++ + I + ++FE++ +H G++ Sbjct: 121 FSATEAEAASASEAEEADL--APIQLDSERRMLLVRGKLIETTFSEFEMMKLFLSHPGKV 178 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R+ L+ +RG DR++DV I LRKK+ N EP I+TV GY + Sbjct: 179 FSREELINTIRGFDSFVTDRAIDVHIVNLRKKIEQNPKEPRLIRTVWGFGYKYTTD 234 >UniRef50_C9Y9A3 Transcriptional regulatory protein ompR n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9A3_9BURK Length = 274 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 131/237 (55%), Gaps = 8/237 (3%) Query: 1 MNT---IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPG 57 M+T I+ V+DDAE+ L+ YL++ + +V D + R +LV+LD+MLPG Sbjct: 29 MHTKISILIVDDDAEITELLGEYLSRFNFEVHTACDADSMRAQLARHAVNLVVLDVMLPG 88 Query: 58 KDGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 DG+T+ R++R + P+++LT+ + + I+ LE GA DY+ K P L+AR+ LR Sbjct: 89 TDGLTLSREIRERSQIPVIMLTARTTTFDRIMGLENGADDYMGKPFEPRELVARIHTVLR 148 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRV-VTLANTEISLSTADFELLWELATH 176 +++ A ++ + F + R V+ ++LS A+F LL Sbjct: 149 RSQGAKEVAP----NVARSDVVCFDGWELHREERTLVSPTGLVVALSNAEFRLLNTFLQT 204 Query: 177 AGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ RD L++ RG + D +RS+D+ +SRLR+KL D+ EP IKTVR GY+F Sbjct: 205 PRRLFSRDQLMEQARGRAMDAFERSIDLLVSRLRQKLADDPDEPSMIKTVRGAGYMF 261 >UniRef50_A5D6A8 Response regulator n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D6A8_PELTS Length = 232 Score = 305 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 64/234 (27%), Positives = 107/234 (45%), Gaps = 9/234 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPG-KDG 60 TI+ V+D+ + L+ L V G A E + DL++LDIMLPG +G Sbjct: 4 KTILIVDDEPRLVRLVKVNLLASGYVVDTAADGKTAIEMLESSGYDLLILDIMLPGPLNG 63 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ +R PI++LT + + I + GA DY+ K LL R++ LR++ Sbjct: 64 FEVCKRIREFSDIPIIMLTGRAREQDRIRGFDAGADDYVTKPFSVEELLLRVKAILRRSH 123 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + FG L I+ + V + E+ L+ ++++L+ L +AG++ Sbjct: 124 PSEEFPKGP--------VYKFGDLVINFAQKRVFVRGREVRLTATEYQVLYHLGCNAGKV 175 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + + LL + G Y + IS LRKK+ D+ +P I GY A Sbjct: 176 ITHEDLLTRVWGAEYRNELHYLRNYISSLRKKIEDDPGDPKYILGKHGIGYYLA 229 >UniRef50_Q2RUW2 Two component transcriptional regulator, winged helix family n=23 Tax=Proteobacteria RepID=Q2RUW2_RHORT Length = 249 Score = 305 bits (783), Expect = 7e-82, Method: Composition-based stats. Identities = 78/238 (32%), Positives = 122/238 (51%), Gaps = 8/238 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 + I+ VEDD +AAYL K +V+ GD + ++ DL+LLDI LPG DG+ Sbjct: 4 HHILVVEDDPVGRETLAAYLRKEGYKVSDVEDGDSMRKVFSQQTVDLILLDIRLPGVDGL 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + R++R + ++++T D +++ I+ALEMGA DY+ K LLAR + LR+ Sbjct: 64 QLLREIRHQSEVGVIMVTGKDDEVDRIVALEMGADDYVTKPFNVRELLARAKNLLRRTLS 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVT-LANTEISLSTADFELLWELATHAGQI 180 A + F T+D R + +++ L+ +FELL A+ G++ Sbjct: 124 AREASEDENQK-------SFAGWTLDIPRRCLFAPDGSDVRLTRGEFELLCCFASRPGRV 176 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 M RD LL + + DR+VDV + RLR+K+ + P I TV GY+FA Sbjct: 177 MTRDNLLDYVSHRDWAPSDRTVDVLVGRLRRKIEADPKAPRHIITVHGIGYVFADSRH 234 >UniRef50_B4CW77 Two component transcriptional regulator, winged helix family n=2 Tax=Verrucomicrobia RepID=B4CW77_9BACT Length = 229 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 112/233 (48%), Gaps = 13/233 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 TI+ +EDD + + V GD + L P L++LD+MLP +G Sbjct: 6 TILIIEDDPVMLRGLKDNFEFEGYHVQTANDGDAGLKLALAIQPALIVLDLMLPKVNGYE 65 Query: 63 ICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 ICR LR + PI++LT+ + + +L L++GA DY+ K LLAR+ LR+ + Sbjct: 66 ICRFLREEKLEMPIIMLTAKGQESDIVLGLKLGADDYVTKPFSIKELLARVEAFLRRQRK 125 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 T T FG D R + ++ LS +F+LL L T+AG+ + Sbjct: 126 QTGT------------VYTFGDCRFDTTARTLVRNGQDVPLSPKEFDLLTFLVTNAGRAL 173 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 RD ++ + G RS+D ++ LR K+ + AEP +KTVR GY F Sbjct: 174 SRDRIMSTVWGYDSRVTPRSIDRFVNALRNKIEPDPAEPRILKTVREFGYKFE 226 >UniRef50_C7N5H9 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N5H9_SLAHD Length = 234 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 3/234 (1%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ V+DDA + +A Y+ + V G +A E R++ DLV+LD+M+ G +G Sbjct: 3 KTILVVDDDASIRDAVAIYMKREGHDVVQAKNGVEALEVFNRQHLDLVILDVMMEGYNGF 62 Query: 62 TICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C +R K S PI++L++ D ++ L ++GA DYI K PA L+ R LR Sbjct: 63 EVCSAIRDKDISLPIIILSAKDDLVDKGLGFKLGADDYITKPFEPAELVMRANSCLR--N 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 ++ + + + G L+ID R VT+ N + L+T ++++L +A + Sbjct: 121 RSPQEAEAEPQAGGGGSVITLGDLSIDVDTRQVTVGNRRLDLTTKEYDILLLMARRPNVV 180 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R +L ++ G Y G V V I +LR+K+ + + P I T GY Sbjct: 181 FTRQQILDSVWGYGYVGSSGVVAVFIRKLREKIEADPSRPVHIITEWGVGYRIV 234 >UniRef50_Q63CK0 Response regulator n=95 Tax=Firmicutes RepID=Q63CK0_BACCZ Length = 254 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 65/233 (27%), Positives = 122/233 (52%), Gaps = 13/233 (5%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+DD + L++ +L + Q G A + I D+V+LDIM+P DG Sbjct: 32 PNILIVDDDPHIRELVSVFLEREGFQTYEAIDGLDALQKINEVKVDMVILDIMMPNMDGF 91 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C +LR + PI++LT+ + +G DY++K P L+ R++ L++ + Sbjct: 92 DVCFELRKYYDIPILMLTAKGETSQKVKGFHLGTDDYLVKPFDPIELVVRVKALLKRYQ- 150 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 +T +++ GT+ ++ VT+ ++L +FELL+ L + AG+ Sbjct: 151 -----------ITVSQSIQVGTVLLNRKTFEVTIGEQTVTLPLKEFELLFTLGSKAGRTC 199 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 R+ L++++ G ++G +R++DV I+RLR+K + ++ IKT+R GY Sbjct: 200 SREQLIEDVWGYDFEGNERTLDVHINRLREKFQEEKSKFS-IKTIRGLGYRLE 251 >UniRef50_Q0EY91 Two comoponent transcriptional regulator, winged helix family protein n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EY91_9PROT Length = 227 Score = 305 bits (783), Expect = 8e-82, Method: Composition-based stats. Identities = 78/233 (33%), Positives = 128/233 (54%), Gaps = 8/233 (3%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ ++DD E+ L++ +L+ V E G + ++ +L ++DIM+PGK+GM + Sbjct: 3 ILLIDDDRELCELMSRFLSSEGFDVCCEHDGISGLARLKQDQFELAVVDIMMPGKNGMDL 62 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 R+LR S P+++LT+ +M+ IL LE+GA DY+ K P L AR+R LR+++ Sbjct: 63 LRELRQSSSLPVIMLTARGEEMDRILGLELGADDYMPKPCNPRELAARIRAVLRRSDTQQ 122 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 + QET FG+L P +R +T + L+ ++ +L L HAG+++ + Sbjct: 123 ESDDKQET--------RFGSLEWHPQSRTITEHGEPVDLTATEYNILTVLMQHAGEVVSK 174 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 L + G + DR++DV I LRKK+ RIKTVR+ G+LF P Sbjct: 175 YELSQAALGKRHGPFDRTLDVHIGHLRKKISAADNTEARIKTVRSVGWLFVPE 227 >UniRef50_C6J6L0 Response regulator n=2 Tax=Bacillales RepID=C6J6L0_9BACL Length = 241 Score = 305 bits (783), Expect = 9e-82, Method: Composition-based stats. Identities = 80/239 (33%), Positives = 126/239 (52%), Gaps = 5/239 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ +ED+ + L++ L +V VE G ET LR++ DL+LLD+MLPG +G Sbjct: 3 QRLLVIEDEPTLSRLLSYNLTNEGYEVIVEDHGQIGYETALRQDFDLILLDLMLPGMNGF 62 Query: 62 TICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 I LR++ P+++LT+ +++ + L+ GA DYI K A LLAR+ LR++ Sbjct: 63 EIMSKLRSEGVKTPVIILTAKNAEEEVVQGLKSGADDYITKPFGVAELLARVAAVLRRS- 121 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T + ++ + + G LTI P VTL I+L +FE+L LA G + Sbjct: 122 --TGKEEREKPAEQDNSQIVLGALTIYPEKYEVTLNGEPITLRPKEFEVLLYLARKPGVV 179 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 M RD L+ + G Y G R+VDV +S LRKKL + + I ++R GY + + Sbjct: 180 MTRDDLMNAVWGFDYIGGQRTVDVHVSSLRKKLELDP-QSVHIDSIRGVGYKLVVNKKQ 237 >UniRef50_D1VT63 Regulatory protein VanR n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VT63_9FIRM Length = 233 Score = 305 bits (783), Expect = 9e-82, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 111/240 (46%), Gaps = 11/240 (4%) Query: 1 MN--TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGK 58 M I+ EDD + + I YL V G +A E + DL+++D+M+P Sbjct: 1 MKDFKILVCEDDKNIANSIGLYLENEGFSVIYAYDGLEAIEVFKNQGADLIIMDLMMPRL 60 Query: 59 DGMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 G + LR PI++L++ D + ++ L +GA DYI K P L+AR+ +LR+ Sbjct: 61 SGEEAIKKLRDISFVPIIILSAKSEDYDKVIGLNIGADDYITKPFNPLELIARVGSNLRR 120 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 +L + + G + ++ + ++ + I+L++ ++++L L + Sbjct: 121 YHSY--------DNLASSEIIQIGNIKLNTFEKTCSVDDKIINLTSLEYKILEFLMKNPN 172 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAW 238 ++ +++ +++ ++V V I R+R+K+ + P I+ GY F + Sbjct: 173 KVFSIESIYEHVWNEPAI-EAKTVTVHIRRIREKIEVDPKRPMYIQVAWGLGYKFVDNKR 231 >UniRef50_C2EDI8 Response regulator n=11 Tax=Firmicutes RepID=C2EDI8_9LACO Length = 243 Score = 305 bits (782), Expect = 9e-82, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 113/233 (48%), Gaps = 5/233 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ VEDD+++ + L + +V G + + E DLV+LDIM+P +G+ Sbjct: 10 KILVVEDDSDIREGVRILLESEEYEVIEAENGVVGLKLL-DETIDLVILDIMMPKLNGLK 68 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +C ++R + P++ LT+ + + +L L +G DY+ K A LL R++ LR+ + Sbjct: 69 VCEEIRKTSNVPVLFLTAKSQESDKLLGLMVGGDDYLAKPFSYAELLGRVKALLRRYQVY 128 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 +G K + G++ ++ + ++ +S ++++L + H G+I Sbjct: 129 ---QGKSTNENEAEKIIEIGSIKLNTAFNEIVADGNKVEVSDLEYKILRLMMQHPGKIFS 185 Query: 183 RDALLKNLRGVSYDGL-DRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + +++ Y +V V I +LR K+ + +P IKTV KGY F Sbjct: 186 TQNIYESVWREPYFYTCGNTVMVHIRKLRTKIEPDPQKPQYIKTVWGKGYRFE 238 >UniRef50_B8G869 Two component transcriptional regulator, winged helix family n=3 Tax=Chloroflexus RepID=B8G869_CHLAD Length = 245 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 113/235 (48%), Gaps = 14/235 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 +V +ED+ + + L M+VTV G A + + + DLV+LD+MLP DGM Sbjct: 18 HVVVIEDELTIAESLRVGLTYEGMRVTVASEGRSALQIVEEQGADLVILDLMLPDIDGMV 77 Query: 63 ICRDLRAKWS-GPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR LRA PI++LT+ + L++GA DYI+K LLAR+ R+ Sbjct: 78 VCRRLRAWSEKLPIIILTARGEVQERVKGLQLGADDYIVKPFSFDELLARVNAIFRRAGI 137 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + P L L+++ R VTL I L+ +F LL + H ++ Sbjct: 138 SR-----------PVTVLQVAGLSLNLETREVTLHGRAIELTPTEFALLEQFMRHPRRVF 186 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 R LL + G +Y G V+V IS LR+K+ D+ E I+TV GY P Sbjct: 187 TRQTLLSRVWGFTYVGDSNIVEVHISNLREKIGDH--ERKLIRTVYGVGYTLRPD 239 >UniRef50_A6W3G3 Two component transcriptional regulator, winged helix family n=9 Tax=Gammaproteobacteria RepID=A6W3G3_MARMS Length = 244 Score = 305 bits (782), Expect = 1e-81, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 133/235 (56%), Gaps = 5/235 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILREN-PDLVLLDIMLPGKDGMT 62 I V+DD E+ +L+ YL KH V G+ E DLV+LDIMLPG+DG Sbjct: 7 IYVVDDDDEIRTLLKTYLEKHQFTVLTADSGETFLANFRAEQEVDLVILDIMLPGQDGFA 66 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR LR + P+++LT+ +M+ I+ LE+GA DY+ K P LLAR++ LR+ E Sbjct: 67 VCRSLRTQSQVPVIMLTANSDEMDRIIGLEIGADDYLAKPFNPRELLARIKAILRRMEHT 126 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 + E + ++ F T+D ++R + + + SLS AD+ LL TH G ++ Sbjct: 127 EVV----EIAPVTHRFYRFAQFTLDTLSRELYFKDEKESLSGADYNLLMLFLTHPGAVLT 182 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 R+ + +N RG LDR +DV +SRLR++L ++A +P IKT+R +GY+ Sbjct: 183 RELIAENTRGRDSAPLDRFIDVHVSRLRQRLREDARQPQLIKTIRGQGYILTASV 237 >UniRef50_Q21DY6 Phosphate regulon transcriptional regulatory protein phoB n=3 Tax=Gammaproteobacteria RepID=Q21DY6_SACD2 Length = 234 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 73/236 (30%), Positives = 119/236 (50%), Gaps = 15/236 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ V+D+ + ++ L + V QA I+ + PDL+LLD MLPG G+ Sbjct: 4 KTILVVDDEPPIRDMLRVALEMAEYAVLEAGDAQQAHSLIVDKKPDLILLDWMLPGTSGI 63 Query: 62 TICRDLRA---KWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 + R L+ PI++LT+ + N + LE+GA DYI K P L+ARL+ LR+ Sbjct: 64 ELARRLKRDEVTSEIPIIMLTAKGEEDNKVQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 + +++ + L +DPI+ VT+++ + + ++ LL TH Sbjct: 124 TDSMGISEP-----------IQVEGLCLDPISHRVTISDMPVQMGPTEYRLLEFFLTHQE 172 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ R+ LL ++ G + +R+VDV I RLRK L I+TVR GY F+ Sbjct: 173 RVYTRNQLLDHVWGGNVYVEERTVDVHIRRLRKALSLEG-HDRFIQTVRGAGYRFS 227 >UniRef50_Q189I8 Two-component response regulator n=5 Tax=Clostridiales RepID=Q189I8_CLOD6 Length = 229 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 64/233 (27%), Positives = 117/233 (50%), Gaps = 6/233 (2%) Query: 4 IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTI 63 I+ VEDD + ++ +L + V G+ A E + D++LLD+MLP G + Sbjct: 3 ILLVEDDKNIREMVYDFLISENYSVKTAIDGNTAIEIFKNYSFDIILLDLMLPKSSGFEV 62 Query: 64 CRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQAT 123 + +R+ P+++ T+ DSD + +L L +GA DYI K LLAR++ ++R+ + Sbjct: 63 LKYIRSVSVVPVIITTAKDSDTDKMLGLNLGADDYITKPFSIVELLARIKANIRRATVYS 122 Query: 124 LTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDR 183 ++ Q+ + + L I+ VV+ + ++L+ +FE++ LAT+ G+ + Sbjct: 123 SSRNSQDM------VIQYKDLIINISKYVVSKSGIALNLTHTEFEIVKLLATNQGRAFSK 176 Query: 184 DALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 + L + Y G + ++ I+RLR KL D + IKT+ GY Sbjct: 177 EQLYNAIWKEPYYGNENVLNTHINRLRNKLSDGMEKNNYIKTLWGIGYKMEEE 229 >UniRef50_D2MMT6 Putative regulatory protein VanR n=1 Tax=Bulleidia extructa W1219 RepID=D2MMT6_9FIRM Length = 232 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 59/232 (25%), Positives = 119/232 (51%), Gaps = 7/232 (3%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M+ I+ V+D+ ++ + +L+K D ++ G +A E + +E DLVL+DIM+P DG Sbjct: 1 MDRILLVDDEKDIVEALKIFLSKEDFELLTATNGKEALEIVQKEKVDLVLMDIMMPIMDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + +++R + PI+ L++ + I L +GA DYI K P ++AR++ LR+ + Sbjct: 61 VKATKEIRKNQNIPIIFLSAKGEREDKIEGLTIGADDYITKPFHPEEVIARIKAQLRRFK 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + Q + G +T++ ++V + EISL+ ++ +L + ++ Sbjct: 121 ELGSQQKDQ-------EVYMLGGITLNDSLKLVNVDGKEISLTPVEYGILKYFIQNPKKL 173 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + + + + G + ++ V I LR+K+ + + P IK V +GY Sbjct: 174 LTSQDIYQEVWKEEPIGSESTIAVHIRHLREKIEIDPSHPRYIKVVWGRGYK 225 >UniRef50_A8ZSJ7 Two component transcriptional regulator, winged helix family n=9 Tax=Bacteria RepID=A8ZSJ7_DESOH Length = 233 Score = 304 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 81/236 (34%), Positives = 125/236 (52%), Gaps = 13/236 (5%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+D+ ++ L+ L + QV G++A E +L PDLV+LD+MLPG DG+ Sbjct: 5 KILIVDDEKDILELLRLSLERDGYQVACAESGEKALEIVLSGRPDLVVLDLMLPGIDGLE 64 Query: 63 ICRDLRAKWSG---PIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 + R +R PI++L++ + + I LE+GA DYI K P +L+AR+R LR+ Sbjct: 65 VARAIRNDDRIQGTPILMLSAKGEESDIITGLELGADDYITKPFSPKILIARIRSVLRRQ 124 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + + P + + +TI P V + +I L+ ++F++L LA+ G Sbjct: 125 Q-------AKAAPPDPGRTIAVSGITIHPRKHTVEVNGKKIDLTPSEFDILSFLASRPGL 177 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + R ++ +RG Y DRSVDV IS LRKKL D I+TVR GY F Sbjct: 178 VFTRWQIVDKIRGEHYAVTDRSVDVLISGLRKKLEDYG---EYIETVRGVGYRFRE 230 >UniRef50_C7N192 Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain n=2 Tax=Bacteria RepID=C7N192_SLAHD Length = 229 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 64/236 (27%), Positives = 113/236 (47%), Gaps = 8/236 (3%) Query: 1 MN-TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKD 59 M TI+ +D+ ++ S++ YL V G QA + +L + D+ LLDIM+P D Sbjct: 1 MPYTILVADDERDIRSVLRLYLEDAGYNVVEAADGKQALDVLLTQPVDVCLLDIMMPEMD 60 Query: 60 GMTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 G + + LR P++++++ D IL L +GA DY++K P +AR+ ++R+ Sbjct: 61 GYQVLKRLRETSDVPVIVVSAKGQDPEKILGLNLGADDYMVKPFNPLEAVARVNTNIRRL 120 Query: 120 EQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQ 179 + + + P K L L +D +T + L++ ++ ++ H G+ Sbjct: 121 KGMAAAQPKR-----PAKVLRCRNLELDQEACALTCNGEPVELTSVEYRIMAMFMQHPGR 175 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + + + + Y + SV V +SRLR KL D+ E IKT+R GY Sbjct: 176 VFTKQQIYECGWDEDYVAAENSVMVCMSRLRSKLGDDGQEA--IKTIRGLGYRLEK 229 >UniRef50_C3ALG3 Two-component response regulator n=5 Tax=Bacillales RepID=C3ALG3_BACMY Length = 238 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 5/234 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ V+D+ E+ ++ +L + G A I + DL ++DIM+P +G Sbjct: 3 RTILIVDDEPEIIEILRLFLEMEGFSILEARDGKSALNFIQKFKIDLAIIDIMMPNINGY 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + + +R ++ PI++L++ + +M+ I+ L +GA D+I K +LAR++ LR+ Sbjct: 63 ELIKIVRKEYKMPIIILSAKNQEMDKIMGLGLGADDFISKPFSLLEVLARIQAQLRRTYD 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 QE S T L +D + ++ EI LS +++LL G+I Sbjct: 123 FNTDLLNQEGSQTC-----IDDLVLDHHSCILDKRGHEIKLSALEYKLLKLFMGEPGRIF 177 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + + +N+ Y D ++ V ISRLR+K+ D+ P +KT+R GY FA Sbjct: 178 TKKQIFENVWSDHYYSDDNTIMVQISRLREKIEDHPRNPVYLKTIRGLGYRFAK 231 >UniRef50_C9RLA0 Two component transcriptional regulator, winged helix family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RLA0_FIBSS Length = 238 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 116/237 (48%), Gaps = 5/237 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 + I+ VED+ + + + +V G++A P L+LLD+MLP K G Sbjct: 4 HRILIVEDEEIIRLGLQDNFELENYEVETACDGEEAIAKTDSFQPHLILLDVMLPKKSGF 63 Query: 62 TICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR +R K I++LT+ + + + L+MGA DY+ K LLAR++ LR+ + Sbjct: 64 EVCRIIRKKHPECIIIMLTAKTEETSKVAGLDMGADDYVTKPFSILELLARVKAFLRRID 123 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 T ++ L A+ F + +D + T + LST +F++L G++ Sbjct: 124 LQTQANPTKQ--LASVDAIDFADIHLDFKKFIATKGGVPLELSTREFQILKYFWQRRGEV 181 Query: 181 MDRDALLKNLRGV--SYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + R+ LL++L G R++D I LR+KL D+ A P I ++R GY F Sbjct: 182 VLREDLLQDLWGYTPENMPSTRTIDNHIVNLRRKLEDDQANPKIILSIRGAGYKFDA 238 >UniRef50_A6M2A3 Two component transcriptional regulator, winged helix family n=13 Tax=Clostridium RepID=A6M2A3_CLOB8 Length = 242 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 74/240 (30%), Positives = 109/240 (45%), Gaps = 12/240 (5%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ VED+ + + L+K + +V G+ A + P LVLLDIMLP G Sbjct: 4 KKILVVEDEFSINDTLKFALSKENFEVRGAYNGESALKIFEEFEPHLVLLDIMLPDISGF 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ--- 118 +C+ + K IV+LT+ D ++ IL +E+GA DYI K + AR+ R+ Sbjct: 64 ELCKIMSQKS--YIVMLTARDDVIDKILGMEIGADDYITKPFEIREVTARINAIFRRVSK 121 Query: 119 ------NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWE 172 +E T + TI+ R V EI L +F+LL Sbjct: 122 NIFNNEHENIASTVSENDLDDIDGDKNKKDEFTINFDTRTVIKDGKEIMLKRKEFDLLSY 181 Query: 173 LATHAGQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 L + G + +R LL + G Y G R+VDV I RLR L D+ E ++TV GY+ Sbjct: 182 LYKNKGIVFNRQQLLNEVWGYDYYGDTRTVDVHIRRLRANLGDD-KENSIVETVFGVGYV 240 >UniRef50_A6T3B9 Two components system response regulator n=48 Tax=Proteobacteria RepID=A6T3B9_JANMA Length = 246 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 140/238 (58%), Gaps = 7/238 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+DD E+ L+A+YL K+ M+ ++ G Q + + + DL++LD+MLPG+DG+T Sbjct: 6 HILIVDDDREIRELLASYLEKNGMRTSLAANGRQMRTVLEQGSVDLIVLDLMLPGEDGLT 65 Query: 63 ICRDLR--AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR+LR + P+++LT+ + + + I+ LEMGA DY+ K L AR+R LR+ Sbjct: 66 LCRELRAGKWRTIPVLMLTARNEETDRIIGLEMGADDYLSKPFAVRELFARIRSVLRRAR 125 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDP-INRVVTLANTEISLSTADFELLWELATHAGQ 179 + E P + L FG +D ++ T ++LS A++ LL H + Sbjct: 126 MLPANLQVSE----PAQFLVFGDWKLDTTARHLLDTQGTMVALSGAEYRLLRVFLDHPQR 181 Query: 180 IMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 ++ RD LL +G D DRS+D+ ISRLR++L D+A EP IKT+R++GY+F+ Sbjct: 182 VLTRDQLLNLTQGRDADPFDRSIDLLISRLRQRLQDDAREPRYIKTLRSEGYVFSAAV 239 >UniRef50_P23620 Phosphate regulon transcriptional regulatory protein phoB n=218 Tax=Proteobacteria RepID=PHOB_PSEAE Length = 229 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 111/236 (47%), Gaps = 16/236 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI+ V+D+A + +IA L + QA I+ PDL+LLD MLPG G+ Sbjct: 4 KTILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGI 63 Query: 62 TICRDLRAKW---SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 + R L+ PI++LT+ + N I LE+GA DYI K P L+ARL+ LR+ Sbjct: 64 ELARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRR 123 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 + G L +DPI+ VT+ + ++ LL TH Sbjct: 124 TGPGDSEAP-----------IEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQE 172 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + R LL + G + +R+VDV I RLRK L + ++TVR GY F+ Sbjct: 173 RAYTRGQLLDQVWGGNVYVEERTVDVHIRRLRKALGEVYEN--LVQTVRGTGYRFS 226 >UniRef50_Q3JG93 Response regulator protein n=61 Tax=Proteobacteria RepID=Q3JG93_BURP1 Length = 288 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 98/238 (41%), Positives = 141/238 (59%), Gaps = 6/238 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ +EDD + LI YL ++ VTV RGD A + P LV+LD+MLP DGM Sbjct: 56 YRVLLIEDDDRLAQLIREYLDSYEFSVTVVRRGDLAVGAVREHQPALVILDLMLPHLDGM 115 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +CR +RA + P+++LT+ + + LE GA DY+ K P VL+AR R LR+ + Sbjct: 116 EVCRRIRAFSNVPVLILTARSDVYDQVAGLETGADDYVTKPIEPRVLVARARALLRRVQP 175 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + L FG L I P NR VT + L TA+F LL LA AG ++ Sbjct: 176 GASVEAP------ASETLVFGELAISPPNRTVTWRGEPVDLKTAEFNLLLILARAAGTVL 229 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHAWE 239 RD +LK LRG+ +DG+DRSVD IS+LR++ D ++EP++IKT+ +GYLF+P AW+ Sbjct: 230 SRDDILKQLRGIEFDGIDRSVDSGISKLRRRFEDASSEPHKIKTIWGRGYLFSPSAWD 287 >UniRef50_D1BL25 Two component transcriptional regulator, winged helix family n=3 Tax=Veillonella RepID=D1BL25_VEIPT Length = 229 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 116/232 (50%), Gaps = 6/232 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ +EDD ++ ++ YL VT+ G E L DL++LD+MLP DG Sbjct: 4 HILIIEDDLDIANIERDYLMVAGYDVTIMTNGTDGIEAALNTPVDLIILDVMLPEMDGFE 63 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 +CR +R K PIV++T+ D++ I L +GA DYI K P+VL+A+++ L Sbjct: 64 VCRQIRDKVRVPIVMVTARLDDIDKIRGLGVGADDYIEKPFSPSVLIAKIKAML------ 117 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 K L E A+ G + +DP V + E+ L +F+LL L + + Sbjct: 118 AQYKRLTERDAMETNAIQSGEIRLDPKMMKVWVNEKEVHLKKKEFQLLEFLMRNRDIVFS 177 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ L + G+ G +V V I+RLR+++ DN ++ I TV GY F Sbjct: 178 KEELYSRVWGLDSYGDYATVAVHINRLREEIEDNPSDSKHIITVWGVGYKFV 229 >UniRef50_A6TSQ9 Two component transcriptional regulator, winged helix family n=2 Tax=Clostridiaceae RepID=A6TSQ9_ALKMQ Length = 236 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 116/235 (49%), Gaps = 6/235 (2%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ V+D+ + LI L + ++ G A E L +NPDL+LLD+MLP DG+ Sbjct: 4 TKLLVVDDEKNIVELIRMNLTRSGFEIIPCYNGLDAIEITLTQNPDLILLDLMLPDIDGL 63 Query: 62 TICRDLR---AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 +CR +R PI++LT+ + + ++ L +GA DYI K L AR+R LR+ Sbjct: 64 EVCRRIRLDERIHQTPIIMLTAKSEETDKVIGLGLGADDYITKPFGLRELEARVRTVLRR 123 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 +K + T + +TID +V + I + ++F++L +LA Sbjct: 124 V---MDSKSTTAETATDTNIIQVQDITIDVNRHIVKKQDEIIEFTLSEFKILKKLAESLE 180 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLF 233 ++ R LL+ + G R VDV I +RKKL D+ P I+T+R GY Sbjct: 181 HVLSRSLLLEEVTGEKSTPDLRIVDVHIRNIRKKLSDHNDSPKYIETIRGVGYKM 235 >UniRef50_D1U371 Two component transcriptional regulator, winged helix family n=1 Tax=Desulfovibrio aespoeensis Aspo-2 RepID=D1U371_9DELT Length = 239 Score = 304 bits (779), Expect = 2e-81, Method: Composition-based stats. Identities = 75/224 (33%), Positives = 120/224 (53%), Gaps = 1/224 (0%) Query: 12 EVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMTICRDLRAKW 71 ++ +L+ YL + +V P GD A E + R+ P LV+LD+M+PG++G+ + RD+RA Sbjct: 15 KLCALLTEYLEGYGFKVRTLPSGDGAVEAVGRDTPSLVILDVMMPGRNGLDVLRDIRAGS 74 Query: 72 SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQATLTKGLQET 131 P+++LT+ D + I+ LE+GA DY+ K P LLAR++ LR+ E + G Sbjct: 75 KVPVIMLTAKGEDTDRIVGLELGADDYMPKPFNPRELLARIKAVLRRAETVGTSGGAPSA 134 Query: 132 SLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMDRDALLKNLR 191 + + G L ++ V+ + E+ LS +F LL L + + RD L+ Sbjct: 135 AQRAV-LVEAGGLALNVSRHVLLVDEDELELSATEFRLLRALMENPDTALTRDELMSLAW 193 Query: 192 GVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 G + DRS+DV +S+LR L A RI+TV GY+F Sbjct: 194 GRDFSAYDRSIDVHVSKLRSLLRPYAGHDKRIRTVWGTGYMFVG 237 >UniRef50_A6LQJ3 Two component transcriptional regulator, winged helix family n=4 Tax=Clostridium RepID=A6LQJ3_CLOB8 Length = 231 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 123/230 (53%), Gaps = 9/230 (3%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ VED+ ++ +LI+ ++ K + +V G +A E DL+LLDIM+P DG++ Sbjct: 2 NILIVEDERDIRNLISLHMRKENYEVYEASDGREALNIFENEKIDLILLDIMMPNVDGIS 61 Query: 63 ICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQA 122 + + +RA + PI+ +T++ +D + +LAL +GA DY++K P L AR+ +LR+ + Sbjct: 62 VIQKVRAISTIPIICITAMGNDSDKVLALGLGADDYLVKPISPIELSARVASNLRRCYKY 121 Query: 123 TLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIMD 182 K + G L + V N +I L+ +F++L L ++ G++ Sbjct: 122 AEHKDI---------IYSTGELKLFTETFEVYKGNRKIDLNPKEFKILKLLVSNLGKVFT 172 Query: 183 RDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYL 232 + + + + +Y G ++ V +S +R+K+ D+ P IKT+R GY Sbjct: 173 KKQIYEEVWEEAYFGDSNNIMVHLSHIREKIEDDPKNPIYIKTIRGIGYK 222 >UniRef50_Q02A31 Two component transcriptional regulator, winged helix family n=2 Tax=Acidobacteria RepID=Q02A31_SOLUE Length = 231 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 109/236 (46%), Gaps = 10/236 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ EDD + + L V GD A + ++ DL+LLD+MLP + G Sbjct: 3 PRILLAEDDPGLVLTLTDRLQNEGYAVESRQDGDSALAEAMGQSYDLILLDVMLPRRSGF 62 Query: 62 TICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +C+ LR PI++LT+ ++ ++ L+ GA DY+ K LLAR+ LR+ Sbjct: 63 DVCKKLRESEIGVPILMLTARGEVVDKVVGLKSGADDYLTKPFEMMELLARIEALLRRAP 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 G + +D VT A ++LS ++ LL L H G+ Sbjct: 123 VRRSL---------NAGTFQLGGIAVDFRRAEVTRAGKPVTLSAREYRLLGYLIDHCGET 173 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPH 236 + R+ LL + G S R+VDV ++ LR+KL +N P ++TVR GY + Sbjct: 174 VTREDLLTQVWGYSATTDTRTVDVHVAWLRQKLEENPKYPRYLQTVRGLGYKLSDE 229 >UniRef50_C6J181 Two-component system response regulator n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J181_9BACL Length = 225 Score = 303 bits (778), Expect = 3e-81, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 113/234 (48%), Gaps = 11/234 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ ++DD + ++I L +VTV G + +L + PDL++LDIM+P DG+ Sbjct: 3 TKILIIDDDKTISTMIRRGLTYEGYEVTVANGGKEGLNLVLEDEPDLIILDIMMPDLDGL 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 +C+ LR PI+++T +DS + + LE GA DY++K L+AR++ LR+ + Sbjct: 63 EVCKRLRKDAGIPILMVTGMDSIADRVHGLETGADDYLVKPFAFEELVARVKALLRRLDH 122 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + L F L +D R + I ST +F LL H Q++ Sbjct: 123 KK----------KEDEKLIFSDLVVDLSTRQAFRGSRTIEFSTTEFNLLCFFMKHPQQVL 172 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 R+ L+ + G + G ++V + LR KL EP I TVR GY+ Sbjct: 173 TRELLMDRVWGFDFRGESNVLEVYVGYLRSKLEAQ-NEPRLIHTVRGAGYVLRE 225 >UniRef50_C6CWW2 Two component transcriptional regulator, winged helix family n=2 Tax=Paenibacillus RepID=C6CWW2_PAESJ Length = 239 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 117/234 (50%), Gaps = 8/234 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 + ++ +ED+ + L++ L + TV G +T L+ N DL++LDIMLPG +G Sbjct: 3 HKVLVIEDEPTLARLLSYNLTQEGYDTTVIDHGATGLQTALQRNFDLIILDIMLPGLNGF 62 Query: 62 TICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 I LR PI++LT+ +++ + L+ GA DYI K A LLAR+ LR+ + Sbjct: 63 EILTRLRQNGVKTPIIILTARNAEEEVVQGLKHGADDYITKPFGVAELLARVSAVLRRTQ 122 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 Q T K + G L+I P V L + L +FE+L L G + Sbjct: 123 Q-----DDSVPIETSEKVITVGDLSIYPEKYEVILNGETVPLRPKEFEVLLYLVQRPGMV 177 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + RD L+ + G Y G R+VDV +S LRKKL + +I+++R GY Sbjct: 178 ITRDDLMNVVWGFDYIGGQRTVDVHVSSLRKKLEL--GQSVQIESIRGVGYKLV 229 >UniRef50_C0ZH45 Two-component response regulator n=2 Tax=Bacillales RepID=C0ZH45_BREBN Length = 229 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 73/233 (31%), Positives = 113/233 (48%), Gaps = 15/233 (6%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I V+DD + ++ AYL K T ++A PDL +LDIMLPG +G Sbjct: 4 YHIAIVDDDINIRQIVEAYLQKEGYVTTAIESAEEAITLEQENPPDLWVLDIMLPGMNGY 63 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 CR +RA PI+++++ D +++ IL LE+G+ DY+ K P L+AR+ L++ +Q Sbjct: 64 EFCRRIRAGSETPIIMVSARDEEVDKILGLELGSDDYLTKPFSPRELVARVNRALQRWKQ 123 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 S L +D R+V E+ +++ +F++L L+ H + Sbjct: 124 MKSHAEQTAISA----------LVLDKEKRLVYSFGEEVEVTSKEFQVLSLLSEHPNRAF 173 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 RD LL + G Y G DR VD I R+RKKL ++TV GY Sbjct: 174 SRDELLSLIWGFDYFGSDRVVDDLIRRIRKKLDKIP-----LETVWGFGYRLR 221 >UniRef50_A9G298 Two-component response regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G298_SORC5 Length = 241 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 11/235 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 T++ VEDD + + L +V V G++ DL+++D+MLP +G Sbjct: 17 RTVLLVEDDPSIAMGLEMNLTAEGYRVLVAEDGERGLALARAGGIDLIIIDVMLPRLNGF 76 Query: 62 TICRDLR-AKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 + R LR + + P+++L++ ++M+ ++ LE+GA DYI K A LLAR++ LR+ Sbjct: 77 ELLRILRNERRTLPVIMLSARGAEMDKVMGLELGAEDYITKPFSLAELLARVKAVLRR-- 134 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + L G + I+ R V + I L+ +F++L LA G++ Sbjct: 135 --------DAIARADGAQLRAGDIVINAATREVRRGDALIELTATEFDVLLCLAEAGGRV 186 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + R+ + + G ++ G R++D I +LR KL +NA P + TVR GY F P Sbjct: 187 LSREQIQAKVWGPTHHGTPRTIDNFILQLRNKLEENATTPRHLLTVRGVGYRFVP 241 >UniRef50_B9XFI9 Two component transcriptional regulator, winged helix family n=1 Tax=bacterium Ellin514 RepID=B9XFI9_9BACT Length = 226 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 72/238 (30%), Positives = 107/238 (44%), Gaps = 15/238 (6%) Query: 1 MNT--IVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGK 58 M+ ++ +EDD + + +V + G + L + PDLVLLDIMLP Sbjct: 1 MHKPSVLIIEDDPALLRGLKDNFEAQKYRVQIARDGQEGLGAALNQPPDLVLLDIMLPKM 60 Query: 59 DGMTICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 +G ICR +RAK PI++LT+ + + I LE+GA DY+ K Sbjct: 61 NGYEICRAIRAKRFDMPIIMLTAKGQEEDIIRGLELGADDYVTKPFSIRE---------- 110 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 A L+ FG +D + EI L+T +F LL AT Sbjct: 111 --LLARAAAFLRRRKGHAATVFEFGDCKLDLAAHKLYQGGKEIELTTKEFRLLEFFATRP 168 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 G+ + RD +L + G DRSVD ++ LR K+ N +P I+T+R+ GY F Sbjct: 169 GRALTRDQILDGVWGNDIVVNDRSVDRCVTTLRAKIETNPHQPVLIQTIRDVGYRFES 226 >UniRef50_C1F3E6 Response regulator DrrA n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F3E6_ACIC5 Length = 232 Score = 303 bits (777), Expect = 4e-81, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 115/236 (48%), Gaps = 14/236 (5%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 TI +EDDA++ L+ L + + R+ P L +LDIM+PG DG+ Sbjct: 3 QTIFVLEDDADIARLVQHNLQSAGYAIRLYSTPANLLSDAERQPPALFMLDIMVPGGDGL 62 Query: 62 TICRDLRAK---WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 +CR LR S PI+ +T+ + + +L LE+GA DYI K P LLAR++ LR+ Sbjct: 63 DVCRRLRNHAALSSIPIIFVTARAGENDRVLGLELGADDYITKPFAPRELLARVKAVLRR 122 Query: 119 NEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAG 178 E+ + + F + ID + + + + +F LL LA H G Sbjct: 123 FER-----------PSTPSLISFEDVVIDASAMQLKVRGELTTTTATEFRLLDYLARHPG 171 Query: 179 QIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 ++ RD LL + G + RSVDV + R+R+K+ + P +KTVR GY F Sbjct: 172 RVFSRDHLLDAVWGDARFVTPRSVDVYVRRIREKIESDPENPRFLKTVRGAGYRFE 227 >UniRef50_C5CFK4 Two component transcriptional regulator, winged helix family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CFK4_KOSOT Length = 226 Score = 302 bits (776), Expect = 4e-81, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 16/233 (6%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGMT 62 I+ V+DD ++ +++ + V E + + PDL++LDIMLP G+ Sbjct: 2 KILVVDDDPDILNIVKTACEQECFNVRTANSARNMWEALENDPPDLIVLDIMLPDASGLD 61 Query: 63 ICRDL-RAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + + L R P++ LT+ SD++ IL LE+GA DYI K P L+AR++ R+ E Sbjct: 62 VIKKLKRKYEEIPVIFLTARKSDLDMILGLELGADDYITKPFNPRTLIARIKAVSRRYEM 121 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + G + ID + + + L +FELL + + G++ Sbjct: 122 ----------GPKDRNVVKLGDIEIDMNSYSMIKDGKKEELPRKEFELLKLMIENPGKVF 171 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 +R +L + G+ + G R+VDV IS+LR+K+ IKTVR GY Sbjct: 172 NRQEILDRVWGMDFFGDFRTVDVHISKLREKIGS-----EFIKTVRGVGYKLV 219 >UniRef50_A9AVR8 Two component transcriptional regulator, winged helix family n=6 Tax=Chloroflexi (class) RepID=A9AVR8_HERA2 Length = 248 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 118/233 (50%), Gaps = 8/233 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ +DD + L+ L+ Q+ G +A + L+L+D+M+P DG Sbjct: 19 RKILVADDDPAILRLVEVALSGQRYQLVTVSNGLEALKMYRDGEYQLLLIDVMMPYIDGF 78 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 T+ +RA+ PI+++T+ D + + E+GA DYI K A L AR+ +R+ E Sbjct: 79 TVTERIRARSDVPIIIITARDGTDDVVHGFELGADDYITKPFRTAELQARVEAIIRRVEG 138 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 K + G L ID V LA +++L+ +FELL+ LA ++GQ+ Sbjct: 139 YQHRKASP--------IVRIGDLEIDEPRHKVLLAGEDVNLTPMEFELLYFLAANSGQVF 190 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 DR+ L + + G Y G VDV + RLR+K+ + ++P RI TVR GY A Sbjct: 191 DREVLFREVWGYEYVGQTNLVDVCVRRLREKIEEQPSKPRRILTVRGVGYKLA 243 >UniRef50_A8LHM5 Two component transcriptional regulator, winged helix family n=11 Tax=Actinobacteria (class) RepID=A8LHM5_FRASN Length = 270 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 104/234 (44%), Gaps = 9/234 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 ++ V+D+ + L+ L H V G +A + PDL++LD+MLP DG Sbjct: 21 PRVLVVDDEPNIVDLVRMALRFHGFDVVTAATGQEALTRAAADQPDLLILDVMLPDADGF 80 Query: 62 TICRDLRAKW-SGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +CR LRA +V LT+ D+ + I L G DYI K L+AR+R LR+ Sbjct: 81 EVCRRLRADGAEVAVVYLTARDAHRDKITGLTYGGDDYITKPFAVEELIARVRAVLRRTR 140 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + L + + +DP +V A+ + LS +F LL + ++ Sbjct: 141 RPAPEPSPAPG------LLTYADVELDPDAHLVRRADQPVELSPTEFSLLRYFLHNPNRV 194 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 + R +L + +DG VD +S LR+KL + P I T R GY Sbjct: 195 LSRAQILAAVWDRDFDGEPTVVDQYVSYLRRKLGQHG--PPLIHTQRGFGYALR 246 >UniRef50_C6PZ92 Two component transcriptional regulator, winged helix family n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PZ92_9CLOT Length = 235 Score = 302 bits (776), Expect = 5e-81, Method: Composition-based stats. Identities = 61/234 (26%), Positives = 113/234 (48%), Gaps = 7/234 (2%) Query: 3 TIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETIL-RENPDLVLLDIMLPGKDGM 61 I+ VEDD E+ +LI+ L K ++ G A + L++LD+M+P DG Sbjct: 8 KILVVEDDKEISTLISKVLEKEGYEMVQAFDGRNAMDKFNFDGEFQLIVLDLMVPFVDGF 67 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 I R +R K + PI+++++ +++M+ I A+ MGA DYI+K + R++ +R+ Sbjct: 68 EIIRRVRQKSTVPILVISAKNTEMDKISAISMGADDYIVKPFSLNEFVVRIKALIRRYIY 127 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + + E++ +++ L +D + N I ++ +FE+L + ++ Sbjct: 128 FNSEQEMHESA------INYKDLVVDIEAHTILKGNQLIKVTPIEFEILKLFLLNPNKVF 181 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAP 235 + + ++ G D +V V I RLR K+ +A P I TV GY Sbjct: 182 TKSQIYDSIWGQDALRNDNTVMVHIKRLRDKIEHDADSPEYISTVWGVGYKLGE 235 >UniRef50_Q6FEG0 Transcriptional regulator protein (OmpR family), response regulator in two-component regulatory system with BaeS, regulates RNA synthesis n=16 Tax=Acinetobacter RepID=Q6FEG0_ACIAD Length = 228 Score = 302 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 119/237 (50%), Gaps = 16/237 (6%) Query: 1 MNTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDG 60 M ++ VED+ E+ L+ YL +V++ G +A E+ L+ P+L++LD+M+P DG Sbjct: 1 MKHVMLVEDEVELAHLVRDYLEASGFEVSMFHDGQEAYESFLQRKPNLMILDLMVPRMDG 60 Query: 61 MTICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNE 120 +TICR +R + PI+++T+ +++ +L L MGA DY+ K P L+AR++ LR+ + Sbjct: 61 LTICRKVREQSDLPIIMVTARTEEIDRVLGLNMGADDYVCKPFSPKELVARVQAVLRRLD 120 Query: 121 QATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQI 180 + + ID + + ++L+ +F LL H GQ+ Sbjct: 121 RKAEPEQNDL-------------FRIDKAQQRIWYKQKSLNLTPTEFRLLELFLEHLGQV 167 Query: 181 MDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLL---DNAAEPYRIKTVRNKGYLFA 234 R LL ++ S+D DR +D I LR+K+ D ++ V GY F Sbjct: 168 YSRAQLLDHINPDSFDVADRVIDSHIKNLRRKISEAADTGNRHEWVQAVYGVGYRFE 224 >UniRef50_B8FLX7 Two component transcriptional regulator, winged helix family n=2 Tax=Bacteria RepID=B8FLX7_DESAA Length = 235 Score = 302 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 127/236 (53%), Gaps = 11/236 (4%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I VED+ ++ L+ YL + D V RGD+ + PDL+LLD+MLPG DG+ Sbjct: 11 KNIWIVEDNRDLSGLLKEYLEQSDFAVKQIFRGDELIPQMRSRPPDLILLDLMLPGADGV 70 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 T+CR++R + PI+++T+ +++ +L LE+GA DY+ K P ++AR++ LR+ Sbjct: 71 TLCREIRTFSAVPIIMVTAKVEEIDRLLGLEIGADDYVCKPFSPREVVARVKAVLRR--- 127 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 A+H G L + P +T+A ++ ++ ++F LL H G++ Sbjct: 128 --------GGEEPHEAAIHIGPLLLKPETHSITVAGKDLKVTQSEFSLLHAFMAHPGKVF 179 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 RD L+ ++G +Y+G DR++D I LRKKL+ I++V GY F Sbjct: 180 SRDELIAKIQGRTYEGYDRNIDWHIKNLRKKLIAAQPGLEPIESVYGVGYKFILEG 235 >UniRef50_A7GIT8 DNA-binding response regulator n=11 Tax=Clostridium RepID=A7GIT8_CLOBL Length = 230 Score = 302 bits (776), Expect = 6e-81, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 98/236 (41%), Gaps = 8/236 (3%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILRENPDLVLLDIMLPGKDGM 61 I+ V+DD + + +L K +V G++A I E DL+L+DIM+P DG Sbjct: 3 YKILIVDDDKTIVEFLQIFLIKEGYEVKFSYNGEEALNKIENEKFDLILMDIMMPKIDGF 62 Query: 62 TICRDLRAKWSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQNEQ 121 + +R + PI+ LT+ D+ + I G DYI K L R+ L++ Sbjct: 63 EAIKRIRRLTNIPIIFLTAKDNQQDKIKGFISGCDDYITKPFDLVELSLRMSAILKRV-- 120 Query: 122 ATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHAGQIM 181 + L ++ + EI+L+ +F +L LA + G++ Sbjct: 121 ------STGVVEENEDLIKVKDLELNLKEHTLYKGEDEITLTPKEFNILCLLARNKGRVF 174 Query: 182 DRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFAPHA 237 L + + G + D S+ I LR+KL D IKTV GY A Sbjct: 175 PSSELYERVWGQEFLENDNSLLTHIRNLREKLNDTVKNSKYIKTVWGVGYKIEKEA 230 >UniRef50_D0LJX0 Two component transcriptional regulator, winged helix family n=43 Tax=Bacteria RepID=D0LJX0_HALO1 Length = 243 Score = 302 bits (775), Expect = 7e-81, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 122/237 (51%), Gaps = 17/237 (7%) Query: 2 NTIVFVEDDAEVGSLIAAYLAKHDMQVTVEPRGDQAEETILREN-PDLVLLDIMLPGKDG 60 TI+ VED+A++ + I L + + V G A E + RE PD +LLD+MLP G Sbjct: 11 KTILLVEDEADLAAAIEYNLQREGYRTRVAHDGRTALEELAREPAPDAILLDLMLPDISG 70 Query: 61 MTICRDLRAK---WSGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLR 117 IC+ LR + P++++T+ ++++ ++ E+GA DY++K L+ R+R LR Sbjct: 71 TEICKHLREQERTRDVPVIMVTAKGAEIDRVVGFEVGADDYVVKPFSVRELMLRIRALLR 130 Query: 118 QNEQATLTKGLQETSLTPYKALHFGTLTIDPINRVVTLANTEISLSTADFELLWELATHA 177 + E+ + F L +D V + EISL+ +F LL+ + Sbjct: 131 RTERPA----------DNPDMITFDRLRVDREGHRVWVDEQEISLTALEFRLLYAFISRR 180 Query: 178 GQIMDRDALLKNLRGVSYDGLDRSVDVAISRLRKKLLDNAAEPYRIKTVRNKGYLFA 234 G++ RDALL ++ G+ D R+VD + RLR+KL D ++T+R GY F Sbjct: 181 GRVQTRDALLSDVWGIEADVTTRTVDTHVKRLREKLGDAG---RYVETLRGVGYRFR 234 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.211 0.835 Lambda K H 0.267 0.0648 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,451,510,524 Number of Sequences: 3077464 Number of extensions: 173739894 Number of successful extensions: 501775 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 31911 Number of HSP's successfully gapped in prelim test: 14117 Number of HSP's that attempted gapping in prelim test: 399928 Number of HSP's gapped (non-prelim): 54397 length of query: 239 length of database: 1,040,396,356 effective HSP length: 125 effective length of query: 114 effective length of database: 655,713,356 effective search space: 74751322584 effective search space used: 74751322584 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.8 bits) S2: 93 (39.8 bits)