BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (86 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q05807 Protein trbE n=30 Tax=root RepID=TRBE_ECOLI 174 8e-43 UniRef50_D0R7F6 Conjugative transfer protein n=4 Tax=Salmonella ... 62 6e-09 UniRef50_Q4L1T2 Conjugative transfer protein n=1 Tax=Salmonella ... 59 4e-08 UniRef50_A6TIH9 Inner membrane protein n=3 Tax=Klebsiella pneumo... 55 5e-07 >UniRef50_Q05807 Protein trbE n=30 Tax=root RepID=TRBE_ECOLI Length = 86 Score = 174 bits (441), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 86/86 (100%), Positives = 86/86 (100%) Query: 1 MMKVIFTSNRFIDFLIRLLITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGVLLFI 60 MMKVIFTSNRFIDFLIRLLITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGVLLFI Sbjct: 1 MMKVIFTSNRFIDFLIRLLITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGVLLFI 60 Query: 61 LYFCFSALTDLQKPDERKSDERNEDE 86 LYFCFSALTDLQKPDERKSDERNEDE Sbjct: 61 LYFCFSALTDLQKPDERKSDERNEDE 86 >UniRef50_D0R7F6 Conjugative transfer protein n=4 Tax=Salmonella enterica subsp. enterica RepID=D0R7F6_SALTD Length = 71 Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 45/71 (63%), Gaps = 2/71 (2%) Query: 10 RFIDFLIRLLITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGVLLFILYFCF-SAL 68 + + FL+R+++T IVISP + WSWD V TTAD ++ A +I G L+F L FCF + L Sbjct: 2 KIMSFLVRVVVTLIVISPAVYWSWDAVSTTTADDIMLAVLIIAAYG-LMFTLLFCFVNVL 60 Query: 69 TDLQKPDERKS 79 T L + D S Sbjct: 61 TKLLQHDNESS 71 >UniRef50_Q4L1T2 Conjugative transfer protein n=1 Tax=Salmonella enterica RepID=Q4L1T2_SALCH Length = 71 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 10 RFIDFLIRLLITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGVLLFILYFCFSALT 69 R I FL+RL +T IV SP + WSWDTVK TTA+ L A +I + V+L LY CF + Sbjct: 2 RIIVFLLRLTVTVIVASPAVYWSWDTVKATTAEDSLLAGLIIAANVVMLMPLY-CFVLIL 60 Query: 70 DLQKPDERKSD 80 ++ + KS Sbjct: 61 TKRRQHDNKSS 71 >UniRef50_A6TIH9 Inner membrane protein n=3 Tax=Klebsiella pneumoniae RepID=A6TIH9_KLEP7 Length = 84 Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 45/84 (53%) Query: 2 MKVIFTSNRFIDFLIRLLITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGVLLFIL 61 MK+ F IDF++RL +T I+ISPVI +SWD VK T+ + + IL +G + + Sbjct: 1 MKMSFHKKPVIDFVLRLTLTIIIISPVIYFSWDAVKGTSGSDYVESVVFILMAGFAMSVC 60 Query: 62 YFCFSALTDLQKPDERKSDERNED 85 Y FS L + + K + D Sbjct: 61 YLFFSVLEKVINARKSKDESIYHD 84 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q05807 Protein trbE n=30 Tax=root RepID=TRBE_ECOLI 114 1e-24 UniRef50_A6TIH9 Inner membrane protein n=3 Tax=Klebsiella pneumo... 105 4e-22 UniRef50_Q4L1T2 Conjugative transfer protein n=1 Tax=Salmonella ... 82 4e-15 UniRef50_D0R7F6 Conjugative transfer protein n=4 Tax=Salmonella ... 73 3e-12 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_Q05807 Protein trbE n=30 Tax=root RepID=TRBE_ECOLI Length = 86 Score = 114 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 86/86 (100%), Positives = 86/86 (100%) Query: 1 MMKVIFTSNRFIDFLIRLLITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGVLLFI 60 MMKVIFTSNRFIDFLIRLLITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGVLLFI Sbjct: 1 MMKVIFTSNRFIDFLIRLLITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGVLLFI 60 Query: 61 LYFCFSALTDLQKPDERKSDERNEDE 86 LYFCFSALTDLQKPDERKSDERNEDE Sbjct: 61 LYFCFSALTDLQKPDERKSDERNEDE 86 >UniRef50_A6TIH9 Inner membrane protein n=3 Tax=Klebsiella pneumoniae RepID=A6TIH9_KLEP7 Length = 84 Score = 105 bits (262), Expect = 4e-22, Method: Composition-based stats. Identities = 30/84 (35%), Positives = 45/84 (53%) Query: 2 MKVIFTSNRFIDFLIRLLITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGVLLFIL 61 MK+ F IDF++RL +T I+ISPVI +SWD VK T+ + + IL +G + + Sbjct: 1 MKMSFHKKPVIDFVLRLTLTIIIISPVIYFSWDAVKGTSGSDYVESVVFILMAGFAMSVC 60 Query: 62 YFCFSALTDLQKPDERKSDERNED 85 Y FS L + + K + D Sbjct: 61 YLFFSVLEKVINARKSKDESIYHD 84 >UniRef50_Q4L1T2 Conjugative transfer protein n=1 Tax=Salmonella enterica RepID=Q4L1T2_SALCH Length = 71 Score = 82.4 bits (202), Expect = 4e-15, Method: Composition-based stats. Identities = 32/71 (45%), Positives = 43/71 (60%), Gaps = 1/71 (1%) Query: 10 RFIDFLIRLLITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGVLLFILYFCFSALT 69 R I FL+RL +T IV SP + WSWDTVK TTA+ L A +I + V+L LY CF + Sbjct: 2 RIIVFLLRLTVTVIVASPAVYWSWDTVKATTAEDSLLAGLIIAANVVMLMPLY-CFVLIL 60 Query: 70 DLQKPDERKSD 80 ++ + KS Sbjct: 61 TKRRQHDNKSS 71 >UniRef50_D0R7F6 Conjugative transfer protein n=4 Tax=Salmonella enterica subsp. enterica RepID=D0R7F6_SALTD Length = 71 Score = 73.2 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 43/70 (61%) Query: 10 RFIDFLIRLLITAIVISPVIIWSWDTVKETTADGMLAAAFVILYSGVLLFILYFCFSALT 69 + + FL+R+++T IVISP + WSWD V TTAD ++ A +I G++ +L+ + LT Sbjct: 2 KIMSFLVRVVVTLIVISPAVYWSWDAVSTTTADDIMLAVLIIAAYGLMFTLLFCFVNVLT 61 Query: 70 DLQKPDERKS 79 L + D S Sbjct: 62 KLLQHDNESS 71 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.319 0.132 0.360 Lambda K H 0.267 0.0408 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 287,217,319 Number of Sequences: 3077464 Number of extensions: 8342257 Number of successful extensions: 42725 Number of sequences better than 1.0e-01: 4 Number of HSP's better than 0.1 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42714 Number of HSP's gapped (non-prelim): 9 length of query: 86 length of database: 1,040,396,356 effective HSP length: 56 effective length of query: 30 effective length of database: 868,058,372 effective search space: 26041751160 effective search space used: 26041751160 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.3 bits) S2: 87 (38.1 bits)