10/01/2012 07:45:17 : INFO  : Run start: Tue Jan 10 07:45:17 GMT 2012
10/01/2012 07:45:19 : INFO  : Initialised job
10/01/2012 07:45:19 : INFO  : Renaming log file 'phyre2_20120110_074517.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/2e57db031308cf7e/phyre_20120110_074517.log'
10/01/2012 07:45:20 : INFO  : Initialised job:
Sequence
>batch____
MKRNLLSSAIIVAIMSLGLTGCDDKKAETETLPPANSQPAAPAPEAKPTEAPVAKAEAKP
ETPAQPVVDEQAVFDEKMDVYIKCYNKLQIPVQRSLARYADWLKDFKQGPTGEERTVYGI
YGISESNLAECEKGVKSAVALTPALQPIDGVAVSYIDAAVALGNTINEMDKYYTQENYKD
DAFAKGKTLHQTFLKNLEAFEPVAESYHAAIQEINDKRQLAELKNIEEREGKTFHYYSLA
VMISAKQINNLISQDKFDAEAAMKKVSELETLVAQAKEADKGGMNFSFINSAGQYQLEAK
KYVRRIRDKVPYSDWDKEQLQDANSSWMVEDSFPRALREYNEMVDDYNSLR

10/01/2012 07:45:20 : INFO  : Checked sequence
10/01/2012 07:45:21 : INFO  : Finding homologues with PSI-BLAST
10/01/2012 07:45:21 : INFO  : PSI-BLAST 3 iterations
10/01/2012 07:46:46 : INFO  : PSI-BLAST 5 iterations
10/01/2012 07:47:50 : INFO  : Finished PSI-BLAST
10/01/2012 07:47:51 : INFO  : Running Buildali to generate a3m file
10/01/2012 07:50:16 : INFO  : Converting to HMM
10/01/2012 07:50:18 : INFO  : Calibrating HMM
10/01/2012 07:50:30 : INFO  : Searching HMM database
10/01/2012 07:58:31 : INFO  : Finished buildali
10/01/2012 07:58:32 : INFO  : Predicting secondary structure
10/01/2012 07:58:34 : INFO  : Predicted secondary structure (PSI-Pred)
10/01/2012 07:58:35 : INFO  : Predicting Disordered regions
10/01/2012 07:58:36 : INFO  : Predicted Disorder (Disopred)
10/01/2012 07:58:37 : INFO  : Running memsat_svm check
10/01/2012 08:00:31 : INFO  : Running memsat_svm full
10/01/2012 08:03:46 : INFO  : Predicted Transmembrane (memsat_svm) ID '2e57db031308cf7e'
10/01/2012 08:03:46 : INFO  : Initialising fold library search
10/01/2012 08:03:48 : INFO  : Initialised search input
10/01/2012 08:03:48 : INFO  : Building Ensemble models
10/01/2012 08:03:51 : INFO  : Building hh.c3ieeA_.model.1.pdb
10/01/2012 08:03:57 : INFO  : Building hh.c3rh3A_.model.2.pdb
10/01/2012 08:04:00 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/2e57db031308cf7e/hh.c3rh3A_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/2e57db031308cf7e/c3rh3A_.2.pdb
10/01/2012 08:04:01 : INFO  : Building c3ieeA_.1.pdb
10/01/2012 08:04:05 : INFO  : Building c3rh3A_.2.pdb
10/01/2012 08:04:09 : INFO  : Building d1vlta_.3.pdb
10/01/2012 08:04:14 : INFO  : Building d1s94a_.4.pdb
10/01/2012 08:04:18 : INFO  : Building c1s94A_.5.pdb
10/01/2012 08:04:23 : INFO  : Building c2kdtA_.6.pdb
10/01/2012 08:04:28 : INFO  : Building c3ls1A_.7.pdb
10/01/2012 08:04:32 : INFO  : Building c3c4mA_.8.pdb
10/01/2012 08:04:37 : INFO  : Building c2kmfA_.9.pdb
10/01/2012 08:04:43 : INFO  : Building d1ykhb1.10.pdb
10/01/2012 08:04:48 : INFO  : Building c1pq1B_.11.pdb
10/01/2012 08:04:53 : INFO  : Building d1pgya_.12.pdb
10/01/2012 08:04:58 : INFO  : Building c3fyqA_.13.pdb
10/01/2012 08:05:03 : INFO  : Building d2liga_.14.pdb
10/01/2012 08:05:08 : INFO  : Building d1ez3a_.15.pdb
10/01/2012 08:05:13 : INFO  : Building d1sj8a2.16.pdb
10/01/2012 08:05:19 : INFO  : Building c3d7vB_.17.pdb
10/01/2012 08:05:25 : INFO  : Building c2j1dG_.18.pdb
10/01/2012 08:05:30 : INFO  : Building d2jdia1.19.pdb
10/01/2012 08:05:36 : INFO  : Building c2nl9B_.20.pdb
10/01/2012 08:05:51 : INFO  : Finished HH model building
10/01/2012 08:05:51 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
10/01/2012 08:06:32 : INFO  : html domain output complete ID '2e57db031308cf7e'
10/01/2012 08:29:31 : INFO  : Run end  : Tue Jan 10 08:29:31 GMT 2012
