Phyre 2 Results for P32151

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Email | l.a.kelley@imperial.ac.uk
Description | P32151
Date | Thu Jan 5 11:49:31 GMT 2012
Unique Job ID | 2e57db031308cf7e

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3ieeA_
Top template information
PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of hypothetical protein bf3319 from bacteroides2 fragilis (yp_212931.1) from bacteroides fragilis nctc 9343 at 1.70 a3 resolution
Confidence and coverage
Confidence: | 99.3% | Coverage: | 71%
248 residues ( 71% of your sequence) have been modelled with 99.3% confidence by the single highest scoring template.
You may wish to submit your sequence to Phyrealarm. This will automatically scan your sequence every week for new potential templates as they appear in the Phyre2 library.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | R | N | L | L | S | S | A | I | I | V | A | I | M | S | L | G | L | T | G | C | D | D | K | K | A | E | T | E | T | L | P | P | A | N | S | Q | P | A | A | P | A | P | E | A | K | P | T | E | A | P | V | A | K | A | E | A | K | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | E | T | P | A | Q | P | V | V | D | E | Q | A | V | F | D | E | K | M | D | V | Y | I | K | C | Y | N | K | L | Q | I | P | V | Q | R | S | L | A | R | Y | A | D | W | L | K | D | F | K | Q | G | P | T | G | E | E | R | T | V | Y | G | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | Y | G | I | S | E | S | N | L | A | E | C | E | K | G | V | K | S | A | V | A | L | T | P | A | L | Q | P | I | D | G | V | A | V | S | Y | I | D | A | A | V | A | L | G | N | T | I | N | E | M | D | K | Y | Y | T | Q | E | N | Y | K | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | D | A | F | A | K | G | K | T | L | H | Q | T | F | L | K | N | L | E | A | F | E | P | V | A | E | S | Y | H | A | A | I | Q | E | I | N | D | K | R | Q | L | A | E | L | K | N | I | E | E | R | E | G | K | T | F | H | Y | Y | S | L | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | V | M | I | S | A | K | Q | I | N | N | L | I | S | Q | D | K | F | D | A | E | A | A | M | K | K | V | S | E | L | E | T | L | V | A | Q | A | K | E | A | D | K | G | G | M | N | F | S | F | I | N | S | A | G | Q | Y | Q | L | E | A | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | .
Sequence |  | K | Y | V | R | R | I | R | D | K | V | P | Y | S | D | W | D | K | E | Q | L | Q | D | A | N | S | S | W | M | V | E | D | S | F | P | R | A | L | R | E | Y | N | E | M | V | D | D | Y | N | S | L | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3ieeA_ |

### PDB 3iee chain A

Region: 71 - 348
Aligned: 248
Modelled: 258
Confidence: 99.3%
Identity: 10%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative exported protein;
PDBTitle: crystal structure of hypothetical protein bf3319 from bacteroides2 fragilis (yp_212931.1) from bacteroides fragilis nctc 9343 at 1.70 a3 resolution

Phyre2
2 |
| c3rh3A_ |

### PDB 3rh3 chain A

Region: 73 - 322
Aligned: 224
Modelled: 228
Confidence: 99.1%
Identity: 13%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:uncharacterized duf3829-like protein;
PDBTitle: crystal structure of an uncharacterized duf3829-like protein (bt_1908)2 from bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution

Phyre2
3 |
| d1vlta_ |

### PDB 1vlt chain A

Region: 143 - 207
Aligned: 65
Modelled: 65
Confidence: 31.5%
Identity: 9%
Fold: Four-helical up-and-down bundle
Superfamily: Aspartate receptor, ligand-binding domain
Family: Aspartate receptor, ligand-binding domain

Phyre2
4 |
| d1s94a_ |

### PDB 1s94 chain A

Region: 259 - 351
Aligned: 90
Modelled: 93
Confidence: 21.1%
Identity: 16%
Fold: STAT-like
Superfamily: t-snare proteins
Family: t-snare proteins

Phyre2
5 |
| c1s94A_ |

### PDB 1s94 chain A

Region: 259 - 351
Aligned: 90
Modelled: 93
Confidence: 21.1%
Identity: 16%
PDB header:endocytosis/exocytosis
Chain: A: PDB Molecule:s-syntaxin;
PDBTitle: crystal structure of the habc domain of neuronal syntaxin from the2 squid loligo pealei

Phyre2
6 |
| c2kdtA_ |

### PDB 2kdt chain A

Region: 78 - 86
Aligned: 9
Modelled: 9
Confidence: 15.8%
Identity: 33%
PDB header:protein transport
Chain: A: PDB Molecule:neuroendocrine convertase 1;
PDBTitle: pc1/3 dcsg sorting domain structure in dpc

Phyre2
7 |
| c3ls1A_ |

### PDB 3ls1 chain A

Region: 58 - 200
Aligned: 119
Modelled: 143
Confidence: 15.2%
Identity: 13%
PDB header:photosynthesis
Chain: A: PDB Molecule:sll1638 protein;
PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+

Phyre2
8 |
| c3c4mA_ |

### PDB 3c4m chain A

Region: 11 - 149
Aligned: 132
Modelled: 139
Confidence: 13.7%
Identity: 15%
PDB header:membrane protein
Chain: A: PDB Molecule:fusion protein of maltose-binding periplasmic protein and
PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r)

Phyre2
9 |
| c2kmfA_ |

### PDB 2kmf chain A

Region: 262 - 349
Aligned: 70
Modelled: 73
Confidence: 12.8%
Identity: 17%
PDB header:photosynthesis
Chain: A: PDB Molecule:photosystem ii 11 kda protein;
PDBTitle: solution structure of psb27 from cyanobacterial photosystem2 ii

Phyre2
10 |
| d1ykhb1 |

### PDB 1ykh chain B domain 1

Region: 83 - 200
Aligned: 105
Modelled: 118
Confidence: 12.2%
Identity: 18%
Fold: Mediator hinge subcomplex-like
Superfamily: Mediator hinge subcomplex-like
Family: CSE2-like

Phyre2
11 |
| c1pq1B_ |

### PDB 1pq1 chain B

Region: 156 - 181
Aligned: 26
Modelled: 26
Confidence: 12.2%
Identity: 27%
PDB header:apoptosis
Chain: B: PDB Molecule:bcl2-like protein 11;
PDBTitle: crystal structure of bcl-xl/bim

Phyre2
12 |
| d1pgya_ |

### PDB 1pgy chain A

Region: 11 - 20
Aligned: 10
Modelled: 10
Confidence: 12.0%
Identity: 60%
Fold: RuvA C-terminal domain-like
Superfamily: UBA-like
Family: UBA domain

Phyre2
13 |
| c3fyqA_ |

### PDB 3fyq chain A

Region: 127 - 171
Aligned: 45
Modelled: 45
Confidence: 11.7%
Identity: 13%
PDB header:cell adhesion
Chain: A: PDB Molecule:cg6831-pa (talin);
PDBTitle: structure of drosophila melanogaster talin ibs2 domain2 (residues 1981-2168)

Phyre2
14 |
| d2liga_ |

### PDB 2lig chain A

Region: 143 - 208
Aligned: 66
Modelled: 66
Confidence: 11.3%
Identity: 9%
Fold: Four-helical up-and-down bundle
Superfamily: Aspartate receptor, ligand-binding domain
Family: Aspartate receptor, ligand-binding domain

Phyre2
15 |
| d1ez3a_ |

### PDB 1ez3 chain A

Region: 259 - 351
Aligned: 93
Modelled: 93
Confidence: 11.3%
Identity: 10%
Fold: STAT-like
Superfamily: t-snare proteins
Family: t-snare proteins

Phyre2
16 |
| d1sj8a2 |

### PDB 1sj8 chain A domain 2

Region: 128 - 162
Aligned: 35
Modelled: 35
Confidence: 10.0%
Identity: 17%
Fold: I/LWEQ domain
Superfamily: I/LWEQ domain
Family: I/LWEQ domain

Phyre2
17 |
| c3d7vB_ |

### PDB 3d7v chain B

Region: 158 - 175
Aligned: 18
Modelled: 18
Confidence: 9.1%
Identity: 22%
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: crystal structure of mcl-1 in complex with an mcl-12 selective bh3 ligand

Phyre2
18 |
| c2j1dG_ |

### PDB 2j1d chain G

Region: 256 - 349
Aligned: 94
Modelled: 94
Confidence: 8.7%
Identity: 9%
PDB header:protein binding
Chain: G: PDB Molecule:disheveled-associated activator of morphogenesis 1;
PDBTitle: crystallization of hdaam1 c-terminal fragment

Phyre2
19 |
| d2jdia1 |

### PDB 2jdi chain A domain 1

Region: 231 - 322
Aligned: 92
Modelled: 92
Confidence: 8.6%
Identity: 13%
Fold: Left-handed superhelix
Superfamily: C-terminal domain of alpha and beta subunits of F1 ATP synthase
Family: C-terminal domain of alpha and beta subunits of F1 ATP synthase

Phyre2
20 |
| c2nl9B_ |

### PDB 2nl9 chain B

Region: 158 - 175
Aligned: 18
Modelled: 18
Confidence: 8.5%
Identity: 28%
PDB header:apoptosis
Chain: B: PDB Molecule:bcl-2-like protein 11;
PDBTitle: crystal structure of the mcl-1:bim bh3 complex

Phyre2
21 |
22 |
23 |
24 |
25 |
26 |
27 |
28 |
29 |
30 |
31 |
32 |
33 |
34 |
35 |
36 |
37 |
38 |
39 |
40 |
41 |
42 |
43 |
44 |
45 |
46 |
47 |
48 |
49 |
50 |
51 |
52 |
53 |
54 |
55 |
56 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3ieeA_ |
|  | 99.3 | 10 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of hypothetical protein bf3319 from bacteroides2 fragilis (yp_212931.1) from bacteroides fragilis nctc 9343 at 1.70 a3 resolution
2 | c3rh3A_ |
|  | 99.1 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized duf3829-like protein; PDBTitle: crystal structure of an uncharacterized duf3829-like protein (bt_1908)2 from bacteroides thetaiotaomicron vpi-5482 at 2.10 a resolution
3 | d1vlta_ |
|  | 31.5 | 9 | Fold:Four-helical up-and-down bundle Superfamily:Aspartate receptor, ligand-binding domain Family:Aspartate receptor, ligand-binding domain
4 | d1s94a_ |
|  | 21.1 | 16 | Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins
5 | c1s94A_ |
|  | 21.1 | 16 | PDB header:endocytosis/exocytosis Chain: A: PDB Molecule:s-syntaxin; PDBTitle: crystal structure of the habc domain of neuronal syntaxin from the2 squid loligo pealei
6 | c2kdtA_ |
|  | 15.8 | 33 | PDB header:protein transport Chain: A: PDB Molecule:neuroendocrine convertase 1; PDBTitle: pc1/3 dcsg sorting domain structure in dpc
7 | c3ls1A_ |
|  | 15.2 | 13 | PDB header:photosynthesis Chain: A: PDB Molecule:sll1638 protein; PDBTitle: crystal structure of cyanobacterial psbq from synechocystis2 sp. pcc 6803 complexed with zn2+
8 | c3c4mA_ |
|  | 13.7 | 15 | PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of maltose-binding periplasmic protein and PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r)
9 | c2kmfA_ |
|  | 12.8 | 17 | PDB header:photosynthesis Chain: A: PDB Molecule:photosystem ii 11 kda protein; PDBTitle: solution structure of psb27 from cyanobacterial photosystem2 ii
10 | d1ykhb1 |
|  | 12.2 | 18 | Fold:Mediator hinge subcomplex-like Superfamily:Mediator hinge subcomplex-like Family:CSE2-like
11 | c1pq1B_ |
|  | 12.2 | 27 | PDB header:apoptosis Chain: B: PDB Molecule:bcl2-like protein 11; PDBTitle: crystal structure of bcl-xl/bim
12 | d1pgya_ |
|  | 12.0 | 60 | Fold:RuvA C-terminal domain-like Superfamily:UBA-like Family:UBA domain
13 | c3fyqA_ |
|  | 11.7 | 13 | PDB header:cell adhesion Chain: A: PDB Molecule:cg6831-pa (talin); PDBTitle: structure of drosophila melanogaster talin ibs2 domain2 (residues 1981-2168)
14 | d2liga_ |
|  | 11.3 | 9 | Fold:Four-helical up-and-down bundle Superfamily:Aspartate receptor, ligand-binding domain Family:Aspartate receptor, ligand-binding domain
15 | d1ez3a_ |
|  | 11.3 | 10 | Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins
16 | d1sj8a2 |
|  | 10.0 | 17 | Fold:I/LWEQ domain Superfamily:I/LWEQ domain Family:I/LWEQ domain
17 | c3d7vB_ |
|  | 9.1 | 22 | PDB header:apoptosis Chain: B: PDB Molecule:bcl-2-like protein 11; PDBTitle: crystal structure of mcl-1 in complex with an mcl-12 selective bh3 ligand
18 | c2j1dG_ |
|  | 8.7 | 9 | PDB header:protein binding Chain: G: PDB Molecule:disheveled-associated activator of morphogenesis 1; PDBTitle: crystallization of hdaam1 c-terminal fragment
19 | d2jdia1 |
|  | 8.6 | 13 | Fold:Left-handed superhelix Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
20 | c2nl9B_ |
|  | 8.5 | 28 | PDB header:apoptosis Chain: B: PDB Molecule:bcl-2-like protein 11; PDBTitle: crystal structure of the mcl-1:bim bh3 complex
21 | c3gvmA_ |
| not modelled | 8.0 | 12 | PDB header:viral protein Chain: A: PDB Molecule:putative uncharacterized protein sag1039; PDBTitle: structure of the homodimeric wxg-100 family protein from streptococcus2 agalactiae
22 | d1wa8b1 |
| not modelled | 7.9 | 10 | Fold:Ferritin-like Superfamily:EsxAB dimer-like Family:ESAT-6 like
23 | c3kj1B_ |
| not modelled | 7.9 | 38 | PDB header:apoptosis Chain: B: PDB Molecule:bcl-2-like protein 11; PDBTitle: mcl-1 in complex with bim bh3 mutant i2da
24 | c2e76D_ |
| not modelled | 7.8 | 14 | PDB header:photosynthesis Chain: D: PDB Molecule:cytochrome b6-f complex iron-sulfur subunit; PDBTitle: crystal structure of the cytochrome b6f complex with tridecyl-2 stigmatellin (tds) from m.laminosus
25 | d1tuba2 |
| not modelled | 7.7 | 22 | Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain
26 | c2d4uA_ |
| not modelled | 7.4 | 12 | PDB header:signaling protein Chain: A: PDB Molecule:methyl-accepting chemotaxis protein i; PDBTitle: crystal structure of the ligand binding domain of the bacterial serine2 chemoreceptor tsr
27 | c2z6eC_ |
| not modelled | 6.9 | 8 | PDB header:protein fibril regulator Chain: C: PDB Molecule:disheveled-associated activator of morphogenesis PDBTitle: crystal structure of human daam1 fh2
28 | d1nm8a1 |
| not modelled | 6.9 | 20 | Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase
29 | d1hx1b_ |
| not modelled | 6.8 | 16 | Fold:Spectrin repeat-like Superfamily:BAG domain Family:BAG domain
30 | c3tekA_ |
| not modelled | 6.8 | 23 | PDB header:dna binding protein Chain: A: PDB Molecule:thermodbp-single stranded dna binding protein; PDBTitle: thermodbp: a non-canonical single-stranded dna binding protein with a2 novel structure and mechanism
31 | d1ndba1 |
| not modelled | 6.6 | 20 | Fold:CoA-dependent acyltransferases Superfamily:CoA-dependent acyltransferases Family:Choline/Carnitine O-acyltransferase
32 | c2b8kD_ |
| not modelled | 6.6 | 17 | PDB header:transferase Chain: D: PDB Molecule:dna-directed rna polymerase ii 32 kda PDBTitle: 12-subunit rna polymerase ii
33 | c2dkdA_ |
| not modelled | 6.5 | 22 | PDB header:isomerase Chain: A: PDB Molecule:phosphoacetylglucosamine mutase; PDBTitle: crystal structure of n-acetylglucosamine-phosphate mutase,2 a member of the alpha-d-phosphohexomutase superfamily, in3 the product complex
34 | d1v54e_ |
| not modelled | 6.5 | 20 | Fold:alpha-alpha superhelix Superfamily:Cytochrome c oxidase subunit E Family:Cytochrome c oxidase subunit E
35 | c3kz0C_ |
| not modelled | 6.4 | 28 | PDB header:apoptosis Chain: C: PDB Molecule:mcl-1 specific peptide mb7; PDBTitle: mcl-1 complex with mcl-1-specific selected peptide
36 | c3kz0D_ |
| not modelled | 6.4 | 28 | PDB header:apoptosis Chain: D: PDB Molecule:mcl-1 specific peptide mb7; PDBTitle: mcl-1 complex with mcl-1-specific selected peptide
37 | c2vs0B_ |
| not modelled | 6.4 | 16 | PDB header:cell invasion Chain: B: PDB Molecule:virulence factor esxa; PDBTitle: structural analysis of homodimeric staphylococcal aureus2 virulence factor esxa
38 | c2y69R_ |
| not modelled | 6.3 | 20 | PDB header:electron transport Chain: R: PDB Molecule:cytochrome c oxidase subunit 5a; PDBTitle: bovine heart cytochrome c oxidase re-refined with molecular2 oxygen
39 | d2f43a1 |
| not modelled | 6.1 | 12 | Fold:Left-handed superhelix Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
40 | c2k7wB_ |
| not modelled | 6.1 | 29 | PDB header:apoptosis Chain: B: PDB Molecule:bcl-2-like protein 11; PDBTitle: bax activation is initiated at a novel interaction site
41 | c3s90B_ |
| not modelled | 6.1 | 9 | PDB header:cell adhesion Chain: B: PDB Molecule:vinculin; PDBTitle: human vinculin head domain vh1 (residues 1-252) in complex with murine2 talin (vbs33; residues 1512-1546)
42 | c3s90A_ |
| not modelled | 6.1 | 9 | PDB header:cell adhesion Chain: A: PDB Molecule:vinculin; PDBTitle: human vinculin head domain vh1 (residues 1-252) in complex with murine2 talin (vbs33; residues 1512-1546)
43 | c2qr4B_ |
| not modelled | 6.0 | 11 | PDB header:hydrolase Chain: B: PDB Molecule:peptidase m3b, oligoendopeptidase f; PDBTitle: crystal structure of oligoendopeptidase-f from enterococcus faecium
44 | d1skyb1 |
| not modelled | 6.0 | 12 | Fold:Left-handed superhelix Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
45 | c2jofA_ |
| not modelled | 5.9 | 50 | PDB header:de novo protein Chain: A: PDB Molecule:trp-cage; PDBTitle: the trp-cage: optimizing the stability of a globular2 miniprotein
46 | c1jrjA_ |
| not modelled | 5.8 | 7 | PDB header:hormone/growth factor Chain: A: PDB Molecule:exendin-4; PDBTitle: solution structure of exendin-4 in 30-vol% trifluoroethanol
47 | c2npuA_ |
| not modelled | 5.8 | 17 | PDB header:transferase Chain: A: PDB Molecule:fkbp12-rapamycin complex-associated protein; PDBTitle: the solution structure of the rapamycin-binding domain of2 mtor (frb)
48 | d1tubb2 |
| not modelled | 5.8 | 22 | Fold:Bacillus chorismate mutase-like Superfamily:Tubulin C-terminal domain-like Family:Tubulin, C-terminal domain
49 | d1u84a_ |
| not modelled | 5.7 | 29 | Fold:YugE-like Superfamily:YugE-like Family:YugE-like
50 | d1fioa_ |
| not modelled | 5.6 | 10 | Fold:STAT-like Superfamily:t-snare proteins Family:t-snare proteins
51 | d1p42a1 |
| not modelled | 5.6 | 16 | Fold:Ribosomal protein S5 domain 2-like Superfamily:Ribosomal protein S5 domain 2-like Family:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase LpxC
52 | d1fx0a1 |
| not modelled | 5.5 | 10 | Fold:Left-handed superhelix Superfamily:C-terminal domain of alpha and beta subunits of F1 ATP synthase Family:C-terminal domain of alpha and beta subunits of F1 ATP synthase
53 | c2l81A_ |
| not modelled | 5.5 | 9 | PDB header:cell adhesion Chain: A: PDB Molecule:enhancer of filamentation 1; PDBTitle: solution nmr structure of the serine-rich domain of hef1 (enhancer of2 filamentation 1) from homo sapiens, northeast structural genomics3 consortium target hr5554a
54 | c3mtuE_ |
| not modelled | 5.5 | 23 | PDB header:contractile protein Chain: E: PDB Molecule:head morphogenesis protein, tropomyosin alpha-1 chain; PDBTitle: structure of the tropomyosin overlap complex from chicken smooth2 muscle
55 | c3tj5A_ |
| not modelled | 5.5 | 10 | PDB header:protein binding/toxin Chain: A: PDB Molecule:vinculin; PDBTitle: human vinculin head domain (vh1, residues 1-258) in complex with the2 vinculin binding site of the surface cell antigen 4 (sca4-vbs-n;3 residues 412-434) from rickettsia rickettsii
56 | c1y9jA_ |
| not modelled | 5.3 | 23 | PDB header:protein transport Chain: A: PDB Molecule:sec1 family domain containing protein 1; PDBTitle: solution structure of the rat sly1 n-terminal domain

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0