BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (120 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ADL8 Inner membrane protein yidG n=93 Tax=Enterobacte... 243 1e-63 UniRef50_C8SZB2 Inner membrane protein YidG n=10 Tax=Enterobacte... 180 1e-44 UniRef50_C7N076 Putative uncharacterized protein n=1 Tax=Sacchar... 43 0.003 UniRef50_C0XR08 Putative uncharacterized protein n=1 Tax=Coryneb... 43 0.004 UniRef50_A0JVP2 Putative uncharacterized protein n=3 Tax=Arthrob... 42 0.008 UniRef50_D2Q055 Putative uncharacterized protein n=1 Tax=Kribbel... 42 0.008 UniRef50_B8HG04 Putative uncharacterized protein n=1 Tax=Arthrob... 41 0.011 UniRef50_A5CUY5 Putative membrane protein n=1 Tax=Clavibacter mi... 41 0.011 UniRef50_A4FNC1 Putative uncharacterized protein n=1 Tax=Sacchar... 41 0.013 UniRef50_C0VUC9 Putative uncharacterized protein n=2 Tax=Coryneb... 40 0.019 UniRef50_B5H9J9 Predicted protein n=13 Tax=Streptomyces RepID=B5... 40 0.020 UniRef50_C0WHR3 Putative uncharacterized protein n=3 Tax=Coryneb... 40 0.021 UniRef50_UPI0000510001 hypothetical protein BlinB_12477 n=1 Tax=... 40 0.031 UniRef50_C8NY24 Membrane protein n=1 Tax=Corynebacterium genital... 38 0.085 UniRef50_A5W6R1 Putative uncharacterized protein n=1 Tax=Pseudom... 38 0.087 UniRef50_Q5YS56 Putative uncharacterized protein n=1 Tax=Nocardi... 38 0.091 >UniRef50_P0ADL8 Inner membrane protein yidG n=93 Tax=Enterobacteriaceae RepID=YIDG_ECO57 Length = 120 Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 120/120 (100%), Positives = 120/120 (100%) Query: 1 MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIV 60 MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIV Sbjct: 1 MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIV 60 Query: 61 ALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAILFAVTHIHQLIVFIERVA 120 ALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAILFAVTHIHQLIVFIERVA Sbjct: 61 ALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAILFAVTHIHQLIVFIERVA 120 >UniRef50_C8SZB2 Inner membrane protein YidG n=10 Tax=Enterobacteriaceae RepID=C8SZB2_KLEPR Length = 120 Score = 180 bits (456), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 85/120 (70%), Positives = 104/120 (86%) Query: 1 MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIV 60 M D R+ARR +DPGLQPERTSLAWFRT+LGYGALMALAIKH+WH+AG+ FW++IG+LAIV Sbjct: 1 MADKRRARRESDPGLQPERTSLAWFRTLLGYGALMALAIKHSWHRAGLPFWLAIGVLAIV 60 Query: 61 ALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAILFAVTHIHQLIVFIERVA 120 A+ILW YTR R+LMDV +SDF Q VRDKFLI+LAVLSLA LFAVTH+ +++FI ++ Sbjct: 61 AVILWGYTRRRHLMDVDDSDFLQPRAVRDKFLIALAVLSLAFLFAVTHLQPIVLFIRDIS 120 >UniRef50_C7N076 Putative uncharacterized protein n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7N076_SACVD Length = 104 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 20/33 (60%), Positives = 23/33 (69%) Query: 9 RIADPGLQPERTSLAWFRTMLGYGALMALAIKH 41 R+ADPGLQPERT LAW RT L G AL ++ Sbjct: 5 RVADPGLQPERTFLAWQRTALAIGVNGALLCRN 37 >UniRef50_C0XR08 Putative uncharacterized protein n=1 Tax=Corynebacterium lipophiloflavum DSM 44291 RepID=C0XR08_9CORY Length = 107 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 3/97 (3%) Query: 10 IADPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIVALILWHYTR 69 +AD GLQPERT+++W RT L ++ + ++F +I +LAI+A++L Sbjct: 5 VADAGLQPERTAMSWTRTALAMMVCSMTLLRWSGPYPDVVF-TAIVLLAILAIVL--IVA 61 Query: 70 NRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAILFAV 106 NR + + SQ H + ++L L L +L + Sbjct: 62 NRPMYRGQAKELSQEHATPNAVGVALMTLMLTVLGGI 98 >UniRef50_A0JVP2 Putative uncharacterized protein n=3 Tax=Arthrobacter RepID=A0JVP2_ARTS2 Length = 115 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 9/68 (13%) Query: 1 MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIK----HNWHQAGMLFWISIGI 56 MP S DPGLQPERT +AW RT L A+ ++ H W AG L + + Sbjct: 1 MPPSTNTPTHGDPGLQPERTDMAWGRTTLSLTVAAAVFLRWMPHHGWF-AGTL----VAV 55 Query: 57 LAIVALIL 64 A++AL + Sbjct: 56 AAVMALTI 63 >UniRef50_D2Q055 Putative uncharacterized protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q055_9ACTO Length = 101 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Query: 12 DPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIVALILW 65 DPGLQPERT LAW RT LG A L + + + F + + ++ ++AL+ W Sbjct: 4 DPGLQPERTLLAWRRTSLGLVANGVLLLASGHGTSSVRFGLGV-VVIVLALVCW 56 >UniRef50_B8HG04 Putative uncharacterized protein n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HG04_ARTCA Length = 112 Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust. Identities = 17/19 (89%), Positives = 17/19 (89%) Query: 11 ADPGLQPERTSLAWFRTML 29 DPGLQPERTSLAW RTML Sbjct: 12 GDPGLQPERTSLAWGRTML 30 >UniRef50_A5CUY5 Putative membrane protein n=1 Tax=Clavibacter michiganensis subsp. michiganensis NCPPB 382 RepID=A5CUY5_CLAM3 Length = 118 Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 4/40 (10%) Query: 2 PDSRKARRIADPGLQPERTSLAWFRTMLG--YGALMALAI 39 PD+ A R +DPGLQPERT+LAW RT L G+L+ L + Sbjct: 4 PDA--AARPSDPGLQPERTALAWRRTALALVAGSLLGLRV 41 >UniRef50_A4FNC1 Putative uncharacterized protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FNC1_SACEN Length = 114 Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust. Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 13/112 (11%) Query: 2 PDSRKARRIADPGLQPERTSLAWFRTMLGY--GALMALA-IKHNWHQAGMLFWI-SIGIL 57 PD R R DPGLQ ERT+LAW RT+L + G L+ L I HN A + + ++ + Sbjct: 6 PDER--RGPWDPGLQNERTTLAWLRTILSFAVGLLVLLRLIAHNSLAAAIACAVFTLPLC 63 Query: 58 AIVALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAILFAVTHI 109 A +AL+ W R T + D L + AV LA+L T + Sbjct: 64 AGIALVTWRRHRR------TERSLHAEAPLPDGILPA-AVAVLAVLGGCTGL 108 >UniRef50_C0VUC9 Putative uncharacterized protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VUC9_9CORY Length = 108 Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust. Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%) Query: 12 DPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIVALILWHYTRNR 71 DPGLQPERT+L+W RT+L A +K G +I++ +L + A+ + R+R Sbjct: 9 DPGLQPERTTLSWSRTVLATCVCSATLVKF-VETFGPAVFIAVFVLLLGAVAILVTQRHR 67 >UniRef50_B5H9J9 Predicted protein n=13 Tax=Streptomyces RepID=B5H9J9_STRPR Length = 99 Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 23/43 (53%) Query: 12 DPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISI 54 DPGLQPERT LAW RT L + LA + + +S+ Sbjct: 8 DPGLQPERTRLAWRRTTLTCTVVAVLAARQTAQDTALAAGLSV 50 >UniRef50_C0WHR3 Putative uncharacterized protein n=3 Tax=Corynebacterium RepID=C0WHR3_9CORY Length = 107 Score = 40.0 bits (92), Expect = 0.021, Method: Compositional matrix adjust. Identities = 16/35 (45%), Positives = 23/35 (65%) Query: 1 MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALM 35 MP ++ + DPGLQPERT L+W RT+L ++ Sbjct: 1 MPSPQQHGELFDPGLQPERTRLSWQRTILALAVIL 35 >UniRef50_UPI0000510001 hypothetical protein BlinB_12477 n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510001 Length = 116 Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust. Identities = 16/28 (57%), Positives = 20/28 (71%) Query: 2 PDSRKARRIADPGLQPERTSLAWFRTML 29 P R+ + ADPGLQPERT+ +W RT L Sbjct: 4 PSPRRLQPHADPGLQPERTTQSWLRTSL 31 >UniRef50_C8NY24 Membrane protein n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NY24_9CORY Length = 109 Score = 38.1 bits (87), Expect = 0.085, Method: Compositional matrix adjust. Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 3/94 (3%) Query: 10 IADPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIVALILWHYTR 69 +AD GLQPERT+++W RT L A+ +L + L + ++G+LA++A+ + R Sbjct: 8 VADEGLQPERTAMSWTRTALAM-AVCSLTLLRWSRPYSALVFGAMGLLALLAMAI--IVR 64 Query: 70 NRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAIL 103 NR S + + F + L + +L Sbjct: 65 NRAEYRAEAEGLSHERIDANVFGVLTITLGMTVL 98 >UniRef50_A5W6R1 Putative uncharacterized protein n=1 Tax=Pseudomonas putida F1 RepID=A5W6R1_PSEP1 Length = 97 Score = 38.1 bits (87), Expect = 0.087, Method: Compositional matrix adjust. Identities = 17/33 (51%), Positives = 21/33 (63%) Query: 10 IADPGLQPERTSLAWFRTMLGYGALMALAIKHN 42 + DPGLQ ERT LAW RT+L A+ LA + Sbjct: 1 MGDPGLQAERTELAWRRTVLALMAVAGLACRQG 33 >UniRef50_Q5YS56 Putative uncharacterized protein n=1 Tax=Nocardia farcinica RepID=Q5YS56_NOCFA Length = 106 Score = 38.1 bits (87), Expect = 0.091, Method: Compositional matrix adjust. Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 3/61 (4%) Query: 12 DPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGM-LFWISIGI--LAIVALILWHYT 68 D GL ERT+LAW RT L ++AL +H G L +++G+ LA+VA++ + Sbjct: 5 DTGLAAERTALAWRRTALAATVVVALLAEHAIGNGGAGLLPLAVGVVPLAVVAIVAYRRA 64 Query: 69 R 69 R Sbjct: 65 R 65 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ADL8 Inner membrane protein yidG n=93 Tax=Enterobacte... 190 9e-48 UniRef50_C8SZB2 Inner membrane protein YidG n=10 Tax=Enterobacte... 189 3e-47 Sequences not found previously or not previously below threshold: UniRef50_B8HG04 Putative uncharacterized protein n=1 Tax=Arthrob... 42 0.008 UniRef50_C0VUC9 Putative uncharacterized protein n=2 Tax=Coryneb... 39 0.044 CONVERGED! >UniRef50_P0ADL8 Inner membrane protein yidG n=93 Tax=Enterobacteriaceae RepID=YIDG_ECO57 Length = 120 Score = 190 bits (484), Expect = 9e-48, Method: Composition-based stats. Identities = 120/120 (100%), Positives = 120/120 (100%) Query: 1 MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIV 60 MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIV Sbjct: 1 MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIV 60 Query: 61 ALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAILFAVTHIHQLIVFIERVA 120 ALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAILFAVTHIHQLIVFIERVA Sbjct: 61 ALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAILFAVTHIHQLIVFIERVA 120 >UniRef50_C8SZB2 Inner membrane protein YidG n=10 Tax=Enterobacteriaceae RepID=C8SZB2_KLEPR Length = 120 Score = 189 bits (480), Expect = 3e-47, Method: Composition-based stats. Identities = 85/120 (70%), Positives = 104/120 (86%) Query: 1 MPDSRKARRIADPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIV 60 M D R+ARR +DPGLQPERTSLAWFRT+LGYGALMALAIKH+WH+AG+ FW++IG+LAIV Sbjct: 1 MADKRRARRESDPGLQPERTSLAWFRTLLGYGALMALAIKHSWHRAGLPFWLAIGVLAIV 60 Query: 61 ALILWHYTRNRNLMDVTNSDFSQFHVVRDKFLISLAVLSLAILFAVTHIHQLIVFIERVA 120 A+ILW YTR R+LMDV +SDF Q VRDKFLI+LAVLSLA LFAVTH+ +++FI ++ Sbjct: 61 AVILWGYTRRRHLMDVDDSDFLQPRAVRDKFLIALAVLSLAFLFAVTHLQPIVLFIRDIS 120 >UniRef50_B8HG04 Putative uncharacterized protein n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HG04_ARTCA Length = 112 Score = 41.8 bits (97), Expect = 0.008, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Query: 12 DPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIVALILWHYTRNR 71 DPGLQPERTSLAW RTML AL ++ H G+ + + A AL ++ R R Sbjct: 13 DPGLQPERTSLAWGRTMLALVTASALFLRWLPHH-GLPILLLFAVSAGAALAIYLTQRRR 71 Query: 72 N 72 Sbjct: 72 Y 72 >UniRef50_C0VUC9 Putative uncharacterized protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VUC9_9CORY Length = 108 Score = 39.1 bits (90), Expect = 0.044, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 47/93 (50%), Gaps = 6/93 (6%) Query: 12 DPGLQPERTSLAWFRTMLGYGALMALAIKHNWHQAGMLFWISIGILAIVALILWHYTRNR 71 DPGLQPERT+L+W RT+L A +K G +I++ +L + A+ + R+R Sbjct: 9 DPGLQPERTTLSWSRTVLATCVCSATLVKFV-ETFGPAVFIAVFVLLLGAVAILVTQRHR 67 Query: 72 NLMDVT--NSDFSQFHVVRDKFLISLAVLSLAI 102 + V N D + + + ++SL L L Sbjct: 68 YAVKVKGINDDAVEPNAIG---VLSLTSLVLCF 97 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.329 0.150 0.474 Lambda K H 0.267 0.0456 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 561,828,623 Number of Sequences: 3077464 Number of extensions: 23200091 Number of successful extensions: 86179 Number of sequences better than 1.0e-01: 39 Number of HSP's better than 0.1 without gapping: 38 Number of HSP's successfully gapped in prelim test: 24 Number of HSP's that attempted gapping in prelim test: 86140 Number of HSP's gapped (non-prelim): 62 length of query: 120 length of database: 1,040,396,356 effective HSP length: 87 effective length of query: 33 effective length of database: 772,656,988 effective search space: 25497680604 effective search space used: 25497680604 T: 11 A: 40 X1: 16 ( 7.6 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 87 (38.0 bits)