BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (107 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ADK5 Inner membrane protein yiaW n=50 Tax=Gammaproteo... 218 5e-56 UniRef50_P32108 Uncharacterized protein yibI n=74 Tax=Proteobact... 172 3e-42 UniRef50_C4SKQ0 Inner membrane protein yiaW n=4 Tax=Proteobacter... 171 6e-42 UniRef50_C3NYG4 GTPase n=61 Tax=Gammaproteobacteria RepID=C3NYG4... 145 4e-34 UniRef50_Q47ZP1 Putative uncharacterized protein n=3 Tax=Gammapr... 127 1e-28 UniRef50_D0XEU0 Putative uncharacterized protein n=1 Tax=Vibrio ... 115 4e-25 UniRef50_A6CVQ9 Predicted inner membrane protein n=1 Tax=Vibrio ... 100 3e-20 UniRef50_D2AAG4 Inner membrane protein yiaW n=3 Tax=Proteobacter... 92 7e-18 UniRef50_B4X3N9 Putative uncharacterized protein n=1 Tax=Alcaniv... 64 2e-09 UniRef50_A7IKV1 Putative uncharacterized protein n=5 Tax=Rhizobi... 60 2e-08 UniRef50_Q137J2 Putative uncharacterized protein n=1 Tax=Rhodops... 59 4e-08 UniRef50_Q7ULG4 Putative uncharacterized protein n=1 Tax=Rhodopi... 51 9e-06 UniRef50_B4CX63 Putative uncharacterized protein n=1 Tax=Chthoni... 47 2e-04 UniRef50_Q0K0R7 Hypothetical membrane spanning protein n=2 Tax=C... 41 0.011 UniRef50_B9NT40 Putative uncharacterized protein n=2 Tax=Rhodoba... 39 0.061 >UniRef50_P0ADK5 Inner membrane protein yiaW n=50 Tax=Gammaproteobacteria RepID=YIAW_ECO57 Length = 107 Score = 218 bits (555), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 107/107 (100%), Positives = 107/107 (100%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP Sbjct: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSAE 107 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSAE Sbjct: 61 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSAE 107 >UniRef50_P32108 Uncharacterized protein yibI n=74 Tax=Proteobacteria RepID=YIBI_ECOLI Length = 120 Score = 172 bits (436), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 85/113 (75%), Positives = 91/113 (80%), Gaps = 8/113 (7%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 MFL+YFALGVLIFVFLVIFYGII +HDIPYLIAKKRNHPHADAIH AGWVSLFTLHVIWP Sbjct: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYRPERGWGMQSH--------DSSVMQLQQRIAGLEKQLADIKSSS 105 FLWIWATLY+PERGWGMQSH D + L RI+ LE QLA K + Sbjct: 61 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTD 113 >UniRef50_C4SKQ0 Inner membrane protein yiaW n=4 Tax=Proteobacteria RepID=C4SKQ0_YERFR Length = 107 Score = 171 bits (434), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 80/97 (82%), Positives = 89/97 (91%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 MFL+YFALGVLI V L+IFYGIIILHDIPYLIAK RNHPHADAIHVAGWVSLFTLHVIWP Sbjct: 1 MFLNYFALGVLIVVALIIFYGIIILHDIPYLIAKARNHPHADAIHVAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQ 97 FLWIWATLYR ERGWGMQ+ ++S +QLQQR+ LE++ Sbjct: 61 FLWIWATLYREERGWGMQNQEASFVQLQQRVTELEQK 97 >UniRef50_C3NYG4 GTPase n=61 Tax=Gammaproteobacteria RepID=C3NYG4_VIBCJ Length = 129 Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 70/112 (62%), Positives = 83/112 (74%), Gaps = 7/112 (6%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 MFLDYFALG+LIFV LVIFYGII++HDIPY IAK+R HPH DAIH AGWVSLFTLH +WP Sbjct: 1 MFLDYFALGLLIFVALVIFYGIIVIHDIPYEIAKEREHPHQDAIHYAGWVSLFTLHALWP 60 Query: 61 FLWIWATLYRPERGWGMQSHDSSVMQLQQR-------IAGLEKQLADIKSSS 105 FLWIWATL+R ERGWG Q ++ + R + L +L +K+SS Sbjct: 61 FLWIWATLWRKERGWGFQKLEAEQHDIHHRVDVLIDEVKQLRTELETLKTSS 112 >UniRef50_Q47ZP1 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=Q47ZP1_COLP3 Length = 115 Score = 127 bits (319), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 64/107 (59%), Positives = 77/107 (71%), Gaps = 4/107 (3%) Query: 3 LDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFL 62 LDYFAL ++ FV LV+FYGII++HDIPY IA R HPH DAIHVAGW+SLFTL IWPFL Sbjct: 2 LDYFALFLVFFVILVLFYGIIVVHDIPYEIAVHRQHPHQDAIHVAGWISLFTLGAIWPFL 61 Query: 63 WIWATLYRPERGWGMQSH----DSSVMQLQQRIAGLEKQLADIKSSS 105 WIWATLY+P GWGM H D +L+ I L+KQ+ + +S Sbjct: 62 WIWATLYKPGIGWGMVHHTSDSDIKTSKLELDILELQKQVELLANSQ 108 >UniRef50_D0XEU0 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XEU0_VIBHA Length = 107 Score = 115 bits (288), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 57/105 (54%), Positives = 71/105 (67%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 + LDY +L +L V L++ +G+I LHDIPY IAKKRNHPHADAIHVAGWVSLF LHVIWP Sbjct: 3 LTLDYASLAILFVVLLILIFGLIALHDIPYEIAKKRNHPHADAIHVAGWVSLFFLHVIWP 62 Query: 61 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSS 105 FLWIWAT+Y E+ + + S Q +++ QL K Sbjct: 63 FLWIWATMYDGEKKNWLGAKPSISQQDYEQLLARINQLEQAKGEE 107 >UniRef50_A6CVQ9 Predicted inner membrane protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CVQ9_9VIBR Length = 106 Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 56/104 (53%), Positives = 71/104 (68%), Gaps = 4/104 (3%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 + LDY +L + V L++ YG+IILHDIPY IAKKRNHPHADAIHVAGW+SLF LHV+WP Sbjct: 3 LTLDYASLAIFFVVLLILIYGLIILHDIPYEIAKKRNHPHADAIHVAGWISLFFLHVMWP 62 Query: 61 FLWIWATLYRPER----GWGMQSHDSSVMQLQQRIAGLEKQLAD 100 LW+WAT+Y ++ G D L +RI LEK + + Sbjct: 63 VLWVWATMYDGDKQQWLGARSAHSDKQYQALVERIDALEKSIKE 106 >UniRef50_D2AAG4 Inner membrane protein yiaW n=3 Tax=Proteobacteria RepID=D2AAG4_SHIF2 Length = 46 Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 45/45 (100%), Positives = 45/45 (100%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIH 45 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIH Sbjct: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIH 45 >UniRef50_B4X3N9 Putative uncharacterized protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X3N9_9GAMM Length = 73 Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 7/63 (11%) Query: 52 LFTLHVIWPFLWIWATLYRPERGWGMQ-------SHDSSVMQLQQRIAGLEKQLADIKSS 104 +FTLHV+WPFLWIWATLYRPERGWG Q + ++ + LQ+++ ++L ++ + Sbjct: 1 MFTLHVLWPFLWIWATLYRPERGWGFQQVQAQQRTDETLITALQEKLDAQSERLTLLEQA 60 Query: 105 SAE 107 AE Sbjct: 61 LAE 63 >UniRef50_A7IKV1 Putative uncharacterized protein n=5 Tax=Rhizobiales RepID=A7IKV1_XANP2 Length = 83 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 33/75 (44%), Positives = 45/75 (60%), Gaps = 3/75 (4%) Query: 2 FLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPF 61 F+D FA+ VL+ V +IL P IA++R+HP A+A+ VAGWV+L V+WP Sbjct: 3 FIDIFAIIVLVVVIASAVALFVILGMTPGAIARRRSHPWAEAVSVAGWVTLLCGFVLWPI 62 Query: 62 LWIWATL---YRPER 73 IWA + RPER Sbjct: 63 ALIWAYVDVPARPER 77 >UniRef50_Q137J2 Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q137J2_RHOPS Length = 120 Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 38/108 (35%), Positives = 56/108 (51%), Gaps = 6/108 (5%) Query: 2 FLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPF 61 FL + L +L + + I + L +P IA R HP A AI++ GW+ L TL V+WP Sbjct: 11 FLHWLTLAILCVLPVAIGAVLYKLGGLPGSIAAARGHPQAAAINICGWMGLVTL-VLWPV 69 Query: 62 LWIWATLYR-PERGWGMQSHDSSVM----QLQQRIAGLEKQLADIKSS 104 +WA L R P RG SV+ Q+ QR+A +E +L ++ Sbjct: 70 AMVWAHLDRAPTRGSPSSDSSRSVVGKLQQVSQRLAAIEAELTRTTTA 117 >UniRef50_Q7ULG4 Putative uncharacterized protein n=1 Tax=Rhodopirellula baltica RepID=Q7ULG4_RHOBA Length = 137 Score = 51.2 bits (121), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 13/107 (12%) Query: 7 ALGVLIFVFLVIFYGIII-----LHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPF 61 AL ++ VFL++F +I+ L +P IA++R+HP ADA++VAGW+ L T ++W Sbjct: 34 ALRIVSLVFLLVFAVLILACIVGLAALPGKIARRRHHPFADAVNVAGWLGLPT-GIVWVL 92 Query: 62 LWIWATLYRPERGWGMQSHDSS-----VMQLQQRIAGLEKQLADIKS 103 +WA + RG + + ++ V QL+ + LE+ + +S Sbjct: 93 AMVWA--HMGPRGNNVSTDQTNRLATQVRQLETLVDSLEQTQSGAQS 137 >UniRef50_B4CX63 Putative uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX63_9BACT Length = 143 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 18/119 (15%) Query: 3 LDYFALGVL-IFVFLVIFYGII---ILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVI 58 LD A G+ + + + GI+ ++H +P IA+KR HP A AI +SL ++ Sbjct: 25 LDSLANGIAWVAIIIAPLIGIVAFWLVHILPEKIAEKRKHPQAGAIQCLCLLSLAFGGLL 84 Query: 59 WPFLWIWA----TLYRPERGWGM----------QSHDSSVMQLQQRIAGLEKQLADIKS 103 WP W+WA YR G + + S QL+ RIA LE ++ K+ Sbjct: 85 WPIAWLWAYSKPVFYRMAYGTDVAEPHGHAPSEEKPASESEQLRTRIAELEAEIKKGKA 143 >UniRef50_Q0K0R7 Hypothetical membrane spanning protein n=2 Tax=Cupriavidus RepID=Q0K0R7_RALEH Length = 136 Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust. Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 4/100 (4%) Query: 10 VLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLWIWA--- 66 V+IFV L Y +LH P +A ++ HP +AIH +SLF ++WP W+WA Sbjct: 26 VMIFVPLAAIYLFWMLHIWPDKVAHRKQHPQREAIHALCLLSLFFGGLLWPMAWLWAHTK 85 Query: 67 -TLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSS 105 YR G D + G +A +++ + Sbjct: 86 PVFYRAAYGTDKLPEDEAARGAAHAPIGRPGNVASLRAPA 125 >UniRef50_B9NT40 Putative uncharacterized protein n=2 Tax=Rhodobacteraceae RepID=B9NT40_9RHOB Length = 120 Score = 38.5 bits (88), Expect = 0.061, Method: Compositional matrix adjust. Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%) Query: 28 IPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLWIWA 66 +P IA KRNHPHA+A+ + GW+ + V W +IWA Sbjct: 36 LPGRIAIKRNHPHAEAVKMMGWMGFLAI-VPWVHAFIWA 73 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ADK5 Inner membrane protein yiaW n=50 Tax=Gammaproteo... 146 2e-34 UniRef50_C4SKQ0 Inner membrane protein yiaW n=4 Tax=Proteobacter... 132 4e-30 UniRef50_P32108 Uncharacterized protein yibI n=74 Tax=Proteobact... 130 1e-29 UniRef50_C3NYG4 GTPase n=61 Tax=Gammaproteobacteria RepID=C3NYG4... 130 2e-29 UniRef50_D0XEU0 Putative uncharacterized protein n=1 Tax=Vibrio ... 122 2e-27 UniRef50_Q47ZP1 Putative uncharacterized protein n=3 Tax=Gammapr... 117 1e-25 UniRef50_A6CVQ9 Predicted inner membrane protein n=1 Tax=Vibrio ... 104 8e-22 UniRef50_Q137J2 Putative uncharacterized protein n=1 Tax=Rhodops... 89 6e-17 UniRef50_Q7ULG4 Putative uncharacterized protein n=1 Tax=Rhodopi... 88 7e-17 UniRef50_B4CX63 Putative uncharacterized protein n=1 Tax=Chthoni... 83 2e-15 UniRef50_A7IKV1 Putative uncharacterized protein n=5 Tax=Rhizobi... 78 9e-14 UniRef50_D2AAG4 Inner membrane protein yiaW n=3 Tax=Proteobacter... 71 1e-11 UniRef50_B4X3N9 Putative uncharacterized protein n=1 Tax=Alcaniv... 62 6e-09 Sequences not found previously or not previously below threshold: UniRef50_C0YIP7 Putative uncharacterized protein n=1 Tax=Chryseo... 59 4e-08 UniRef50_Q0K0R7 Hypothetical membrane spanning protein n=2 Tax=C... 52 5e-06 UniRef50_B9NT40 Putative uncharacterized protein n=2 Tax=Rhodoba... 47 2e-04 UniRef50_C7RSB7 Putative uncharacterized protein n=1 Tax=Candida... 45 5e-04 UniRef50_B9QYG9 Putative uncharacterized protein n=1 Tax=Labrenz... 45 6e-04 UniRef50_Q162X5 Putative uncharacterized protein n=6 Tax=Rhodoba... 40 0.024 UniRef50_Q47WJ6 Putative uncharacterized protein n=1 Tax=Colwell... 39 0.047 >UniRef50_P0ADK5 Inner membrane protein yiaW n=50 Tax=Gammaproteobacteria RepID=YIAW_ECO57 Length = 107 Score = 146 bits (368), Expect = 2e-34, Method: Composition-based stats. Identities = 107/107 (100%), Positives = 107/107 (100%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP Sbjct: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSAE 107 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSAE Sbjct: 61 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSAE 107 >UniRef50_C4SKQ0 Inner membrane protein yiaW n=4 Tax=Proteobacteria RepID=C4SKQ0_YERFR Length = 107 Score = 132 bits (331), Expect = 4e-30, Method: Composition-based stats. Identities = 80/102 (78%), Positives = 90/102 (88%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 MFL+YFALGVLI V L+IFYGIIILHDIPYLIAK RNHPHADAIHVAGWVSLFTLHVIWP Sbjct: 1 MFLNYFALGVLIVVALIIFYGIIILHDIPYLIAKARNHPHADAIHVAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIK 102 FLWIWATLYR ERGWGMQ+ ++S +QLQQR+ LE++ + Sbjct: 61 FLWIWATLYREERGWGMQNQEASFVQLQQRVTELEQKQSTTT 102 >UniRef50_P32108 Uncharacterized protein yibI n=74 Tax=Proteobacteria RepID=YIBI_ECOLI Length = 120 Score = 130 bits (327), Expect = 1e-29, Method: Composition-based stats. Identities = 85/113 (75%), Positives = 91/113 (80%), Gaps = 8/113 (7%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 MFL+YFALGVLIFVFLVIFYGII +HDIPYLIAKKRNHPHADAIH AGWVSLFTLHVIWP Sbjct: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYRPERGWGMQSH--------DSSVMQLQQRIAGLEKQLADIKSSS 105 FLWIWATLY+PERGWGMQSH D + L RI+ LE QLA K + Sbjct: 61 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTD 113 >UniRef50_C3NYG4 GTPase n=61 Tax=Gammaproteobacteria RepID=C3NYG4_VIBCJ Length = 129 Score = 130 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 66/104 (63%), Positives = 81/104 (77%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 MFLDYFALG+LIFV LVIFYGII++HDIPY IAK+R HPH DAIH AGWVSLFTLH +WP Sbjct: 1 MFLDYFALGLLIFVALVIFYGIIVIHDIPYEIAKEREHPHQDAIHYAGWVSLFTLHALWP 60 Query: 61 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSS 104 FLWIWATL+R ERGWG Q ++ + R+ L ++ +++ Sbjct: 61 FLWIWATLWRKERGWGFQKLEAEQHDIHHRVDVLIDEVKQLRTE 104 >UniRef50_D0XEU0 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XEU0_VIBHA Length = 107 Score = 122 bits (307), Expect = 2e-27, Method: Composition-based stats. Identities = 57/105 (54%), Positives = 71/105 (67%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 + LDY +L +L V L++ +G+I LHDIPY IAKKRNHPHADAIHVAGWVSLF LHVIWP Sbjct: 3 LTLDYASLAILFVVLLILIFGLIALHDIPYEIAKKRNHPHADAIHVAGWVSLFFLHVIWP 62 Query: 61 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSS 105 FLWIWAT+Y E+ + + S Q +++ QL K Sbjct: 63 FLWIWATMYDGEKKNWLGAKPSISQQDYEQLLARINQLEQAKGEE 107 >UniRef50_Q47ZP1 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=Q47ZP1_COLP3 Length = 115 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 64/107 (59%), Positives = 77/107 (71%), Gaps = 4/107 (3%) Query: 3 LDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFL 62 LDYFAL ++ FV LV+FYGII++HDIPY IA R HPH DAIHVAGW+SLFTL IWPFL Sbjct: 2 LDYFALFLVFFVILVLFYGIIVVHDIPYEIAVHRQHPHQDAIHVAGWISLFTLGAIWPFL 61 Query: 63 WIWATLYRPERGWGMQSH----DSSVMQLQQRIAGLEKQLADIKSSS 105 WIWATLY+P GWGM H D +L+ I L+KQ+ + +S Sbjct: 62 WIWATLYKPGIGWGMVHHTSDSDIKTSKLELDILELQKQVELLANSQ 108 >UniRef50_A6CVQ9 Predicted inner membrane protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CVQ9_9VIBR Length = 106 Score = 104 bits (260), Expect = 8e-22, Method: Composition-based stats. Identities = 56/104 (53%), Positives = 71/104 (68%), Gaps = 4/104 (3%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 + LDY +L + V L++ YG+IILHDIPY IAKKRNHPHADAIHVAGW+SLF LHV+WP Sbjct: 3 LTLDYASLAIFFVVLLILIYGLIILHDIPYEIAKKRNHPHADAIHVAGWISLFFLHVMWP 62 Query: 61 FLWIWATLYRPER----GWGMQSHDSSVMQLQQRIAGLEKQLAD 100 LW+WAT+Y ++ G D L +RI LEK + + Sbjct: 63 VLWVWATMYDGDKQQWLGARSAHSDKQYQALVERIDALEKSIKE 106 >UniRef50_Q137J2 Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q137J2_RHOPS Length = 120 Score = 88.6 bits (218), Expect = 6e-17, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 6/108 (5%) Query: 2 FLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPF 61 FL + L +L + + I + L +P IA R HP A AI++ GW+ L TL V+WP Sbjct: 11 FLHWLTLAILCVLPVAIGAVLYKLGGLPGSIAAARGHPQAAAINICGWMGLVTL-VLWPV 69 Query: 62 LWIWATLYR-PERGWGMQSHDSSV----MQLQQRIAGLEKQLADIKSS 104 +WA L R P RG SV Q+ QR+A +E +L ++ Sbjct: 70 AMVWAHLDRAPTRGSPSSDSSRSVVGKLQQVSQRLAAIEAELTRTTTA 117 >UniRef50_Q7ULG4 Putative uncharacterized protein n=1 Tax=Rhodopirellula baltica RepID=Q7ULG4_RHOBA Length = 137 Score = 88.2 bits (217), Expect = 7e-17, Method: Composition-based stats. Identities = 34/107 (31%), Positives = 60/107 (56%), Gaps = 13/107 (12%) Query: 7 ALGVLIFVFLVIFYGIII-----LHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPF 61 AL ++ VFL++F +I+ L +P IA++R+HP ADA++VAGW+ L T ++W Sbjct: 34 ALRIVSLVFLLVFAVLILACIVGLAALPGKIARRRHHPFADAVNVAGWLGLPT-GIVWVL 92 Query: 62 LWIWATLYRPERGWGMQSHDSS-----VMQLQQRIAGLEKQLADIKS 103 +WA + RG + + ++ V QL+ + LE+ + +S Sbjct: 93 AMVWA--HMGPRGNNVSTDQTNRLATQVRQLETLVDSLEQTQSGAQS 137 >UniRef50_B4CX63 Putative uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX63_9BACT Length = 143 Score = 83.2 bits (204), Expect = 2e-15, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 18/119 (15%) Query: 3 LDYFALGVL-IFVFLVIFYGII---ILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVI 58 LD A G+ + + + GI+ ++H +P IA+KR HP A AI +SL ++ Sbjct: 25 LDSLANGIAWVAIIIAPLIGIVAFWLVHILPEKIAEKRKHPQAGAIQCLCLLSLAFGGLL 84 Query: 59 WPFLWIWAT----LYRPERGWGM----------QSHDSSVMQLQQRIAGLEKQLADIKS 103 WP W+WA YR G + + S QL+ RIA LE ++ K+ Sbjct: 85 WPIAWLWAYSKPVFYRMAYGTDVAEPHGHAPSEEKPASESEQLRTRIAELEAEIKKGKA 143 >UniRef50_A7IKV1 Putative uncharacterized protein n=5 Tax=Rhizobiales RepID=A7IKV1_XANP2 Length = 83 Score = 77.8 bits (190), Expect = 9e-14, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 43/72 (59%) Query: 2 FLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPF 61 F+D FA+ VL+ V +IL P IA++R+HP A+A+ VAGWV+L V+WP Sbjct: 3 FIDIFAIIVLVVVIASAVALFVILGMTPGAIARRRSHPWAEAVSVAGWVTLLCGFVLWPI 62 Query: 62 LWIWATLYRPER 73 IWA + P R Sbjct: 63 ALIWAYVDVPAR 74 >UniRef50_D2AAG4 Inner membrane protein yiaW n=3 Tax=Proteobacteria RepID=D2AAG4_SHIF2 Length = 46 Score = 70.9 bits (172), Expect = 1e-11, Method: Composition-based stats. Identities = 45/45 (100%), Positives = 45/45 (100%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIH 45 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIH Sbjct: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIH 45 >UniRef50_B4X3N9 Putative uncharacterized protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X3N9_9GAMM Length = 73 Score = 62.0 bits (149), Expect = 6e-09, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 7/63 (11%) Query: 52 LFTLHVIWPFLWIWATLYRPERGWGMQ-------SHDSSVMQLQQRIAGLEKQLADIKSS 104 +FTLHV+WPFLWIWATLYRPERGWG Q + ++ + LQ+++ ++L ++ + Sbjct: 1 MFTLHVLWPFLWIWATLYRPERGWGFQQVQAQQRTDETLITALQEKLDAQSERLTLLEQA 60 Query: 105 SAE 107 AE Sbjct: 61 LAE 63 >UniRef50_C0YIP7 Putative uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YIP7_9FLAO Length = 95 Score = 59.3 bits (142), Expect = 4e-08, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 35/80 (43%) Query: 10 VLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLWIWATLY 69 +L+ + + Y +H P +A+K+ HP +AI +SL ++WP IWA Sbjct: 13 ILLVLPIAGIYLFWKVHIYPEKVAEKKKHPQLNAIKSMCLLSLVFGGLLWPVALIWANYD 72 Query: 70 RPERGWGMQSHDSSVMQLQQ 89 + + + + + + Sbjct: 73 YGNQNTSEKDTEITEEEFKT 92 >UniRef50_Q0K0R7 Hypothetical membrane spanning protein n=2 Tax=Cupriavidus RepID=Q0K0R7_RALEH Length = 136 Score = 52.0 bits (123), Expect = 5e-06, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Query: 4 DYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLW 63 + + V+IFV L Y +LH P +A ++ HP +AIH +SLF ++WP W Sbjct: 20 NAISWVVMIFVPLAAIYLFWMLHIWPDKVAHRKQHPQREAIHALCLLSLFFGGLLWPMAW 79 Query: 64 IWAT----LYRPERGWG 76 +WA YR G Sbjct: 80 LWAHTKPVFYRAAYGTD 96 >UniRef50_B9NT40 Putative uncharacterized protein n=2 Tax=Rhodobacteraceae RepID=B9NT40_9RHOB Length = 120 Score = 47.4 bits (111), Expect = 2e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 25 LHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLWIWATLYRPERGWGMQSHDSSV 84 + +P IA KRNHPHA+A+ + GW+ + V W +IWA + + + Sbjct: 33 IMGLPGRIAIKRNHPHAEAVKMMGWMGFLAI-VPWVHAFIWA-FHDGVTVDVRRGPEDER 90 Query: 85 MQLQQRIAGLEKQLA 99 ++ I L + Sbjct: 91 KAIRDEIKRLGGTVK 105 >UniRef50_C7RSB7 Putative uncharacterized protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RSB7_9PROT Length = 141 Score = 45.4 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%) Query: 4 DYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLW 63 DY L + + + L +P IA R HP A+A+ G+ L W Sbjct: 13 DYLTFLTLAMCVVALIMSWLFLAGLPGRIAIARKHPEAEAVKYLGYAGLLPTVYPWMQAL 72 Query: 64 IWA 66 IWA Sbjct: 73 IWA 75 >UniRef50_B9QYG9 Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QYG9_9RHOB Length = 80 Score = 45.4 bits (106), Expect = 6e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 21 GIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLWIWATLY--RPERGWGMQ 78 G + L P IAK+R H A+A+ + G+ TL ++ P +IWA P R G + Sbjct: 18 GWLFLAVWPGKIAKRRGHRRAEAVTMCGYWGALTLGLLMPIAFIWAYTDGEEPSRNSGAE 77 Query: 79 SH 80 Sbjct: 78 GD 79 >UniRef50_Q162X5 Putative uncharacterized protein n=6 Tax=Rhodobacteraceae RepID=Q162X5_ROSDO Length = 142 Score = 40.0 bits (92), Expect = 0.024, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 33/77 (42%), Gaps = 1/77 (1%) Query: 2 FLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFT-LHVIWP 60 +L F + + + ++I LH IP +A K NHP + + ++LFT + W Sbjct: 33 YLFTFMVFFTVAIVILIGVAYFTLHAIPEKLAHKSNHPQFQLVGILSLLALFTHNGLFWV 92 Query: 61 FLWIWATLYRPERGWGM 77 + A P+ + Sbjct: 93 AAILVAGFQFPDFSSPL 109 >UniRef50_Q47WJ6 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47WJ6_COLP3 Length = 125 Score = 38.9 bits (89), Expect = 0.047, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 1/99 (1%) Query: 10 VLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFT-LHVIWPFLWIWATL 68 +LI + L+ LH +P IA +NH I + ++LFT ++ W + A + Sbjct: 25 ILIVLVLIAGVFYFKLHAVPEHIAHGKNHTQIQLITILTILALFTHNNIFWVAALVLAVV 84 Query: 69 YRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSAE 107 P+ +QS S+ + Q ++ + + E Sbjct: 85 ELPDFLTPLQSIAKSLTTIAQSKEQKTQKKTEDTVAVKE 123 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ADK5 Inner membrane protein yiaW n=50 Tax=Gammaproteo... 132 3e-30 UniRef50_C3NYG4 GTPase n=61 Tax=Gammaproteobacteria RepID=C3NYG4... 122 5e-27 UniRef50_C4SKQ0 Inner membrane protein yiaW n=4 Tax=Proteobacter... 120 1e-26 UniRef50_P32108 Uncharacterized protein yibI n=74 Tax=Proteobact... 119 3e-26 UniRef50_D0XEU0 Putative uncharacterized protein n=1 Tax=Vibrio ... 112 4e-24 UniRef50_Q47ZP1 Putative uncharacterized protein n=3 Tax=Gammapr... 106 3e-22 UniRef50_A6CVQ9 Predicted inner membrane protein n=1 Tax=Vibrio ... 97 2e-19 UniRef50_C0YIP7 Putative uncharacterized protein n=1 Tax=Chryseo... 90 3e-17 UniRef50_B4CX63 Putative uncharacterized protein n=1 Tax=Chthoni... 87 1e-16 UniRef50_Q137J2 Putative uncharacterized protein n=1 Tax=Rhodops... 87 2e-16 UniRef50_Q7ULG4 Putative uncharacterized protein n=1 Tax=Rhodopi... 84 2e-15 UniRef50_B9NT40 Putative uncharacterized protein n=2 Tax=Rhodoba... 83 3e-15 UniRef50_A7IKV1 Putative uncharacterized protein n=5 Tax=Rhizobi... 76 3e-13 UniRef50_C7RSB7 Putative uncharacterized protein n=1 Tax=Candida... 75 7e-13 UniRef50_Q0K0R7 Hypothetical membrane spanning protein n=2 Tax=C... 71 9e-12 UniRef50_B9QYG9 Putative uncharacterized protein n=1 Tax=Labrenz... 70 3e-11 UniRef50_D2AAG4 Inner membrane protein yiaW n=3 Tax=Proteobacter... 67 1e-10 UniRef50_B4X3N9 Putative uncharacterized protein n=1 Tax=Alcaniv... 54 1e-06 Sequences not found previously or not previously below threshold: UniRef50_Q89PJ8 Blr3482 protein n=2 Tax=Bradyrhizobiaceae RepID=... 43 0.003 UniRef50_Q162X5 Putative uncharacterized protein n=6 Tax=Rhodoba... 43 0.004 UniRef50_C9QAC2 Permease n=5 Tax=Vibrio RepID=C9QAC2_9VIBR 42 0.004 UniRef50_Q47WJ6 Putative uncharacterized protein n=1 Tax=Colwell... 40 0.023 UniRef50_A3XTI9 Permease of the major facilitator superfamily pr... 40 0.023 UniRef50_A7JYU4 Permease n=9 Tax=Gammaproteobacteria RepID=A7JYU... 39 0.034 CONVERGED! >UniRef50_P0ADK5 Inner membrane protein yiaW n=50 Tax=Gammaproteobacteria RepID=YIAW_ECO57 Length = 107 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 107/107 (100%), Positives = 107/107 (100%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP Sbjct: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSAE 107 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSAE Sbjct: 61 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSAE 107 >UniRef50_C3NYG4 GTPase n=61 Tax=Gammaproteobacteria RepID=C3NYG4_VIBCJ Length = 129 Score = 122 bits (305), Expect = 5e-27, Method: Composition-based stats. Identities = 66/105 (62%), Positives = 81/105 (77%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 MFLDYFALG+LIFV LVIFYGII++HDIPY IAK+R HPH DAIH AGWVSLFTLH +WP Sbjct: 1 MFLDYFALGLLIFVALVIFYGIIVIHDIPYEIAKEREHPHQDAIHYAGWVSLFTLHALWP 60 Query: 61 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSS 105 FLWIWATL+R ERGWG Q ++ + R+ L ++ +++ Sbjct: 61 FLWIWATLWRKERGWGFQKLEAEQHDIHHRVDVLIDEVKQLRTEL 105 >UniRef50_C4SKQ0 Inner membrane protein yiaW n=4 Tax=Proteobacteria RepID=C4SKQ0_YERFR Length = 107 Score = 120 bits (301), Expect = 1e-26, Method: Composition-based stats. Identities = 80/102 (78%), Positives = 90/102 (88%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 MFL+YFALGVLI V L+IFYGIIILHDIPYLIAK RNHPHADAIHVAGWVSLFTLHVIWP Sbjct: 1 MFLNYFALGVLIVVALIIFYGIIILHDIPYLIAKARNHPHADAIHVAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIK 102 FLWIWATLYR ERGWGMQ+ ++S +QLQQR+ LE++ + Sbjct: 61 FLWIWATLYREERGWGMQNQEASFVQLQQRVTELEQKQSTTT 102 >UniRef50_P32108 Uncharacterized protein yibI n=74 Tax=Proteobacteria RepID=YIBI_ECOLI Length = 120 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 85/113 (75%), Positives = 91/113 (80%), Gaps = 8/113 (7%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 MFL+YFALGVLIFVFLVIFYGII +HDIPYLIAKKRNHPHADAIH AGWVSLFTLHVIWP Sbjct: 1 MFLNYFALGVLIFVFLVIFYGIIAIHDIPYLIAKKRNHPHADAIHTAGWVSLFTLHVIWP 60 Query: 61 FLWIWATLYRPERGWGMQSH--------DSSVMQLQQRIAGLEKQLADIKSSS 105 FLWIWATLY+PERGWGMQSH D + L RI+ LE QLA K + Sbjct: 61 FLWIWATLYQPERGWGMQSHVASQEKATDPEIAALSDRISRLEHQLAAEKKTD 113 >UniRef50_D0XEU0 Putative uncharacterized protein n=1 Tax=Vibrio harveyi 1DA3 RepID=D0XEU0_VIBHA Length = 107 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 57/105 (54%), Positives = 71/105 (67%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 + LDY +L +L V L++ +G+I LHDIPY IAKKRNHPHADAIHVAGWVSLF LHVIWP Sbjct: 3 LTLDYASLAILFVVLLILIFGLIALHDIPYEIAKKRNHPHADAIHVAGWVSLFFLHVIWP 62 Query: 61 FLWIWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSS 105 FLWIWAT+Y E+ + + S Q +++ QL K Sbjct: 63 FLWIWATMYDGEKKNWLGAKPSISQQDYEQLLARINQLEQAKGEE 107 >UniRef50_Q47ZP1 Putative uncharacterized protein n=3 Tax=Gammaproteobacteria RepID=Q47ZP1_COLP3 Length = 115 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 64/107 (59%), Positives = 77/107 (71%), Gaps = 4/107 (3%) Query: 3 LDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFL 62 LDYFAL ++ FV LV+FYGII++HDIPY IA R HPH DAIHVAGW+SLFTL IWPFL Sbjct: 2 LDYFALFLVFFVILVLFYGIIVVHDIPYEIAVHRQHPHQDAIHVAGWISLFTLGAIWPFL 61 Query: 63 WIWATLYRPERGWGMQSH----DSSVMQLQQRIAGLEKQLADIKSSS 105 WIWATLY+P GWGM H D +L+ I L+KQ+ + +S Sbjct: 62 WIWATLYKPGIGWGMVHHTSDSDIKTSKLELDILELQKQVELLANSQ 108 >UniRef50_A6CVQ9 Predicted inner membrane protein n=1 Tax=Vibrio shilonii AK1 RepID=A6CVQ9_9VIBR Length = 106 Score = 96.7 bits (239), Expect = 2e-19, Method: Composition-based stats. Identities = 56/104 (53%), Positives = 71/104 (68%), Gaps = 4/104 (3%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWP 60 + LDY +L + V L++ YG+IILHDIPY IAKKRNHPHADAIHVAGW+SLF LHV+WP Sbjct: 3 LTLDYASLAIFFVVLLILIYGLIILHDIPYEIAKKRNHPHADAIHVAGWISLFFLHVMWP 62 Query: 61 FLWIWATLYRPER----GWGMQSHDSSVMQLQQRIAGLEKQLAD 100 LW+WAT+Y ++ G D L +RI LEK + + Sbjct: 63 VLWVWATMYDGDKQQWLGARSAHSDKQYQALVERIDALEKSIKE 106 >UniRef50_C0YIP7 Putative uncharacterized protein n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YIP7_9FLAO Length = 95 Score = 89.8 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 37/86 (43%) Query: 4 DYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLW 63 + + +L+ + + Y +H P +A+K+ HP +AI +SL ++WP Sbjct: 7 NAASWLILLVLPIAGIYLFWKVHIYPEKVAEKKKHPQLNAIKSMCLLSLVFGGLLWPVAL 66 Query: 64 IWATLYRPERGWGMQSHDSSVMQLQQ 89 IWA + + + + + + Sbjct: 67 IWANYDYGNQNTSEKDTEITEEEFKT 92 >UniRef50_B4CX63 Putative uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CX63_9BACT Length = 143 Score = 87.4 bits (215), Expect = 1e-16, Method: Composition-based stats. Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 14/114 (12%) Query: 4 DYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLW 63 + A +I L+ ++H +P IA+KR HP A AI +SL ++WP W Sbjct: 30 NGIAWVAIIIAPLIGIVAFWLVHILPEKIAEKRKHPQAGAIQCLCLLSLAFGGLLWPIAW 89 Query: 64 IWAT----LYRPERGWGM----------QSHDSSVMQLQQRIAGLEKQLADIKS 103 +WA YR G + + S QL+ RIA LE ++ K+ Sbjct: 90 LWAYSKPVFYRMAYGTDVAEPHGHAPSEEKPASESEQLRTRIAELEAEIKKGKA 143 >UniRef50_Q137J2 Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris BisB5 RepID=Q137J2_RHOPS Length = 120 Score = 86.7 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 38/108 (35%), Positives = 55/108 (50%), Gaps = 6/108 (5%) Query: 2 FLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPF 61 FL + L +L + + I + L +P IA R HP A AI++ GW+ L TL V+WP Sbjct: 11 FLHWLTLAILCVLPVAIGAVLYKLGGLPGSIAAARGHPQAAAINICGWMGLVTL-VLWPV 69 Query: 62 LWIWATLYR-PERGWGMQSHDSSV----MQLQQRIAGLEKQLADIKSS 104 +WA L R P RG SV Q+ QR+A +E +L ++ Sbjct: 70 AMVWAHLDRAPTRGSPSSDSSRSVVGKLQQVSQRLAAIEAELTRTTTA 117 >UniRef50_Q7ULG4 Putative uncharacterized protein n=1 Tax=Rhodopirellula baltica RepID=Q7ULG4_RHOBA Length = 137 Score = 83.6 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 57/106 (53%), Gaps = 8/106 (7%) Query: 3 LDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFL 62 L +L L+ ++I I+ L +P IA++R+HP ADA++VAGW+ L T ++W Sbjct: 35 LRIVSLVFLLVFAVLILACIVGLAALPGKIARRRHHPFADAVNVAGWLGLPT-GIVWVLA 93 Query: 63 WIWATLYRPERGWGMQSHDSS-----VMQLQQRIAGLEKQLADIKS 103 +WA + RG + + ++ V QL+ + LE+ + +S Sbjct: 94 MVWA--HMGPRGNNVSTDQTNRLATQVRQLETLVDSLEQTQSGAQS 137 >UniRef50_B9NT40 Putative uncharacterized protein n=2 Tax=Rhodobacteraceae RepID=B9NT40_9RHOB Length = 120 Score = 82.8 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 24 ILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLWIWATLYRPERGWGMQSHDSS 83 + +P IA KRNHPHA+A+ + GW+ + V W +IWA + + + Sbjct: 32 FIMGLPGRIAIKRNHPHAEAVKMMGWMGFLAI-VPWVHAFIWA-FHDGVTVDVRRGPEDE 89 Query: 84 VMQLQQRIAGLEKQLA 99 ++ I L + Sbjct: 90 RKAIRDEIKRLGGTVK 105 >UniRef50_A7IKV1 Putative uncharacterized protein n=5 Tax=Rhizobiales RepID=A7IKV1_XANP2 Length = 83 Score = 76.3 bits (186), Expect = 3e-13, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 43/72 (59%) Query: 2 FLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPF 61 F+D FA+ VL+ V +IL P IA++R+HP A+A+ VAGWV+L V+WP Sbjct: 3 FIDIFAIIVLVVVIASAVALFVILGMTPGAIARRRSHPWAEAVSVAGWVTLLCGFVLWPI 62 Query: 62 LWIWATLYRPER 73 IWA + P R Sbjct: 63 ALIWAYVDVPAR 74 >UniRef50_C7RSB7 Putative uncharacterized protein n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RSB7_9PROT Length = 141 Score = 75.1 bits (183), Expect = 7e-13, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 38/104 (36%), Gaps = 1/104 (0%) Query: 4 DYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLW 63 DY L + + + L +P IA R HP A+A+ G+ L W Sbjct: 13 DYLTFLTLAMCVVALIMSWLFLAGLPGRIAIARKHPEAEAVKYLGYAGLLPTVYPWMQAL 72 Query: 64 IWATLYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSAE 107 IWA + + ++ + IA L + + ++ E Sbjct: 73 IWA-FKPTDIVDIRRFPREEAIETDREIARLRGLPSTMHAAVVE 115 >UniRef50_Q0K0R7 Hypothetical membrane spanning protein n=2 Tax=Cupriavidus RepID=Q0K0R7_RALEH Length = 136 Score = 71.3 bits (173), Expect = 9e-12, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%) Query: 4 DYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLW 63 + + V+IFV L Y +LH P +A ++ HP +AIH +SLF ++WP W Sbjct: 20 NAISWVVMIFVPLAAIYLFWMLHIWPDKVAHRKQHPQREAIHALCLLSLFFGGLLWPMAW 79 Query: 64 IWAT----LYRPERGWG 76 +WA YR G Sbjct: 80 LWAHTKPVFYRAAYGTD 96 >UniRef50_B9QYG9 Putative uncharacterized protein n=1 Tax=Labrenzia alexandrii DFL-11 RepID=B9QYG9_9RHOB Length = 80 Score = 69.7 bits (169), Expect = 3e-11, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 21 GIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFLWIWATLY--RPERGWGMQ 78 G + L P IAK+R H A+A+ + G+ TL ++ P +IWA P R G + Sbjct: 18 GWLFLAVWPGKIAKRRGHRRAEAVTMCGYWGALTLGLLMPIAFIWAYTDGEEPSRNSGAE 77 Query: 79 SH 80 Sbjct: 78 GD 79 >UniRef50_D2AAG4 Inner membrane protein yiaW n=3 Tax=Proteobacteria RepID=D2AAG4_SHIF2 Length = 46 Score = 67.4 bits (163), Expect = 1e-10, Method: Composition-based stats. Identities = 45/45 (100%), Positives = 45/45 (100%) Query: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIH 45 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIH Sbjct: 1 MFLDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIH 45 >UniRef50_B4X3N9 Putative uncharacterized protein n=1 Tax=Alcanivorax sp. DG881 RepID=B4X3N9_9GAMM Length = 73 Score = 53.9 bits (128), Expect = 1e-06, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 7/63 (11%) Query: 52 LFTLHVIWPFLWIWATLYRPERGWGMQ-------SHDSSVMQLQQRIAGLEKQLADIKSS 104 +FTLHV+WPFLWIWATLYRPERGWG Q + ++ + LQ+++ ++L ++ + Sbjct: 1 MFTLHVLWPFLWIWATLYRPERGWGFQQVQAQQRTDETLITALQEKLDAQSERLTLLEQA 60 Query: 105 SAE 107 AE Sbjct: 61 LAE 63 >UniRef50_Q89PJ8 Blr3482 protein n=2 Tax=Bradyrhizobiaceae RepID=Q89PJ8_BRAJA Length = 161 Score = 43.1 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 1/97 (1%) Query: 11 LIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFT-LHVIWPFLWIWATLY 69 LI L + LH +P +A K + + V G +SLFT +H+ W + A + Sbjct: 44 LIGTVLWVGTLYWKLHSLPERMAHKSQKLQFEFVAVLGLISLFTHMHIFWVAGLLLALID 103 Query: 70 RPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSA 106 P+ G ++S SV ++ + S A Sbjct: 104 LPDFGTPLRSIAGSVERIADATPSEAGDVVAESQSDA 140 >UniRef50_Q162X5 Putative uncharacterized protein n=6 Tax=Rhodobacteraceae RepID=Q162X5_ROSDO Length = 142 Score = 42.8 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 3/77 (3%) Query: 6 FALGVLIFVFLVIFYG--IIILHDIPYLIAKKRNHPHADAIHVAGWVSLFT-LHVIWPFL 62 F V V +VI G LH IP +A K NHP + + ++LFT + W Sbjct: 35 FTFMVFFTVAIVILIGVAYFTLHAIPEKLAHKSNHPQFQLVGILSLLALFTHNGLFWVAA 94 Query: 63 WIWATLYRPERGWGMQS 79 + A P+ +++ Sbjct: 95 ILVAGFQFPDFSSPLRA 111 >UniRef50_C9QAC2 Permease n=5 Tax=Vibrio RepID=C9QAC2_9VIBR Length = 145 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 1/68 (1%) Query: 3 LDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFL 62 L A +L+ + YG LH+IP A ++H I W+ H +W Sbjct: 45 LHIVAGFILVASVVAGVYGFWKLHEIPINKAHSKDHHQIGLITALTWIGFLW-HWVWVVA 103 Query: 63 WIWATLYR 70 I A + Sbjct: 104 VILAFVDM 111 >UniRef50_Q47WJ6 Putative uncharacterized protein n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47WJ6_COLP3 Length = 125 Score = 40.1 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 3/99 (3%) Query: 9 GVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFT-LHVIWPFLWIWAT 67 +LI + L+ LH +P IA +NH I + ++LFT ++ W + A Sbjct: 24 VILIVLVLIAGVFYFKLHAVPEHIAHGKNHTQIQLITILTILALFTHNNIFWVAALVLAV 83 Query: 68 LYRPERGWGMQSHDSSVMQLQQRIAGLEKQLADIKSSSA 106 + P+ +QS S+ + Q + +K + + A Sbjct: 84 VELPDFLTPLQSIAKSLTTIAQ--SKEQKTQKKTEDTVA 120 >UniRef50_A3XTI9 Permease of the major facilitator superfamily protein n=21 Tax=Gammaproteobacteria RepID=A3XTI9_9VIBR Length = 116 Score = 40.1 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 6/100 (6%) Query: 3 LDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFL 62 L A VL+ YG +H++P A + H I W+ F H +W Sbjct: 17 LHVVAGVVLVATIAAACYGFWRVHELPINKAHSKEHHQLGLITALTWIG-FIWHWVWVLA 75 Query: 63 WIWATLYRPE-----RGWGMQSHDSSVMQLQQRIAGLEKQ 97 I A + + R + + Q++ G + Sbjct: 76 VILAFVDMEKAIINLRDTWKAPAEPTGQQVKNDQDGESQT 115 >UniRef50_A7JYU4 Permease n=9 Tax=Gammaproteobacteria RepID=A7JYU4_VIBSE Length = 108 Score = 39.3 bits (90), Expect = 0.034, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 1/88 (1%) Query: 3 LDYFALGVLIFVFLVIFYGIIILHDIPYLIAKKRNHPHADAIHVAGWVSLFTLHVIWPFL 62 L A VLI YG +H++P A ++H I W+ F H +W Sbjct: 17 LHVVAAVVLIASVAGACYGFWKIHELPINKAHSKDHHQIGLITALTWIG-FVWHWVWVLA 75 Query: 63 WIWATLYRPERGWGMQSHDSSVMQLQQR 90 I+A + + ++ S Q + + Sbjct: 76 VIFAFVDMEKAIINLRDTWKSKPQTETQ 103 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.321 0.132 0.360 Lambda K H 0.267 0.0404 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 531,589,718 Number of Sequences: 3077464 Number of extensions: 18109735 Number of successful extensions: 101718 Number of sequences better than 1.0e-01: 32 Number of HSP's better than 0.1 without gapping: 62 Number of HSP's successfully gapped in prelim test: 15 Number of HSP's that attempted gapping in prelim test: 101642 Number of HSP's gapped (non-prelim): 78 length of query: 107 length of database: 1,040,396,356 effective HSP length: 75 effective length of query: 32 effective length of database: 809,586,556 effective search space: 25906769792 effective search space used: 25906769792 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.4 bits) S2: 87 (38.1 bits)