Phyre 2 Results for P0A6E1

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P0A6E1
Date | Thu Jan 5 11:02:55 GMT 2012
Unique Job ID | 2df6746add5b5226

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1e6ca_
Top template information
Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK)
Confidence and coverage
Confidence: | 100.0% | Coverage: | 97%
169 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | T | Q | P | L | F | L | I | G | P | R | G | C | G | K | T | T | V | G | M | A | L | A | D | S | L | N | R | R | F | V | D | T | D | Q | W | L | Q | S | Q | L | N | M | T | V | A | E | I | V | E | R | E | E | W | A | G | F | R | A | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | E | T | A | A | L | E | A | V | T | A | P | S | T | V | I | A | T | G | G | G | I | I | L | T | E | F | N | R | H | F | M | Q | N | N | G | I | V | V | Y | L | C | A | P | V | S | V | L | V | N | R | L | Q | A | A | P | E | E | D | L | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? |  | ? |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | .
Sequence |  | P | T | L | T | G | K | P | L | S | E | E | V | Q | E | V | L | E | E | R | D | A | L | Y | R | E | V | A | H | I | I | I | D | A | T | N | E | P | S | Q | V | I | S | E | I | R | S | A | L | A | Q | T | I | N | C
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1e6ca_ |

### PDB 1e6c chain A

Region: 1 - 169
Aligned: 169
Modelled: 169
Confidence: 100.0%
Identity: 51%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Shikimate kinase (AroK)

Phyre2
2 |
| c1zuiA_ |

### PDB 1zui chain A

Region: 3 - 168
Aligned: 156
Modelled: 160
Confidence: 99.9%
Identity: 29%
PDB header:transferase
Chain: A: PDB Molecule:shikimate kinase;
PDBTitle: structural basis for shikimate-binding specificity of helicobacter2 pylori shikimate kinase

Phyre2
3 |
| c3trfB_ |

### PDB 3trf chain B

Region: 4 - 169
Aligned: 165
Modelled: 166
Confidence: 99.9%
Identity: 33%
PDB header:transferase
Chain: B: PDB Molecule:shikimate kinase;
PDBTitle: structure of a shikimate kinase (arok) from coxiella burnetii

Phyre2
4 |
| c2pt5D_ |

### PDB 2pt5 chain D

Region: 4 - 171
Aligned: 152
Modelled: 153
Confidence: 99.9%
Identity: 34%
PDB header:transferase
Chain: D: PDB Molecule:shikimate kinase;
PDBTitle: crystal structure of shikimate kinase (aq_2177) from aquifex aeolicus2 vf5

Phyre2
5 |
| d2iyva1 |

### PDB 2iyv chain A domain 1

Region: 3 - 168
Aligned: 163
Modelled: 166
Confidence: 99.9%
Identity: 28%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Shikimate kinase (AroK)

Phyre2
6 |
| d1viaa_ |

### PDB 1via chain A

Region: 3 - 169
Aligned: 160
Modelled: 163
Confidence: 99.9%
Identity: 25%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Shikimate kinase (AroK)

Phyre2
7 |
| d1kaga_ |

### PDB 1kag chain A

Region: 2 - 164
Aligned: 155
Modelled: 155
Confidence: 99.9%
Identity: 32%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Shikimate kinase (AroK)

Phyre2
8 |
| c3t61A_ |

### PDB 3t61 chain A

Region: 1 - 171
Aligned: 163
Modelled: 171
Confidence: 99.9%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:gluconokinase;
PDBTitle: crystal structure of a gluconokinase from sinorhizobium meliloti 1021

Phyre2
9 |
| d1q3ta_ |

### PDB 1q3t chain A

Region: 1 - 172
Aligned: 167
Modelled: 172
Confidence: 99.8%
Identity: 18%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2
10 |
| c3nwjB_ |

### PDB 3nwj chain B

Region: 1 - 173
Aligned: 170
Modelled: 173
Confidence: 99.8%
Identity: 27%
PDB header:transferase
Chain: B: PDB Molecule:atsk2;
PDBTitle: crystal structure of shikimate kinase from arabidopsis thaliana2 (atsk2)

Phyre2
11 |
| d1rkba_ |

### PDB 1rkb chain A

Region: 1 - 172
Aligned: 164
Modelled: 172
Confidence: 99.8%
Identity: 20%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2
12 |
| c3cm0A_ |

### PDB 3cm0 chain A

Region: 1 - 169
Aligned: 169
Modelled: 169
Confidence: 99.8%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase;
PDBTitle: crystal structure of adenylate kinase from thermus2 thermophilus hb8

Phyre2
13 |
| d1knqa_ |

### PDB 1knq chain A

Region: 1 - 170
Aligned: 163
Modelled: 170
Confidence: 99.8%
Identity: 16%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Gluconate kinase

Phyre2
14 |
| c2bwjC_ |

### PDB 2bwj chain C

Region: 2 - 172
Aligned: 171
Modelled: 171
Confidence: 99.8%
Identity: 16%
PDB header:transferase
Chain: C: PDB Molecule:adenylate kinase 5;
PDBTitle: structure of adenylate kinase 5

Phyre2
15 |
| c2rhmD_ |

### PDB 2rhm chain D

Region: 2 - 172
Aligned: 171
Modelled: 171
Confidence: 99.8%
Identity: 18%
PDB header:unknown function
Chain: D: PDB Molecule:putative kinase;
PDBTitle: crystal structure of a putative kinase (caur_3907) from chloroflexus2 aurantiacus j-10-fl at 1.70 a resolution

Phyre2
16 |
| c3akcA_ |

### PDB 3akc chain A

Region: 1 - 170
Aligned: 159
Modelled: 170
Confidence: 99.8%
Identity: 19%
PDB header:transferase
Chain: A: PDB Molecule:cytidylate kinase;
PDBTitle: crystal structure of cmp kinase in complex with cdp and adp from2 thermus thermophilus hb8

Phyre2
17 |
| d1ak2a1 |

### PDB 1ak2 chain A domain 1

Region: 2 - 171
Aligned: 170
Modelled: 170
Confidence: 99.8%
Identity: 18%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2
18 |
| d3adka_ |

### PDB 3adk chain A

Region: 2 - 170
Aligned: 169
Modelled: 169
Confidence: 99.8%
Identity: 15%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2
19 |
| d1ckea_ |

### PDB 1cke chain A

Region: 1 - 173
Aligned: 159
Modelled: 173
Confidence: 99.8%
Identity: 19%
Fold: P-loop containing nucleoside triphosphate hydrolases
Superfamily: P-loop containing nucleoside triphosphate hydrolases
Family: Nucleotide and nucleoside kinases

Phyre2
20 |
| c2ar7A_ |

### PDB 2ar7 chain A

Region: 4 - 173
Aligned: 170
Modelled: 170
Confidence: 99.8%
Identity: 14%
PDB header:transferase
Chain: A: PDB Molecule:adenylate kinase 4;
PDBTitle: crystal structure of human adenylate kinase 4, ak4

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1e6ca_ |
|  | 100.0 | 51 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK)
2 | c1zuiA_ |
|  | 99.9 | 29 | PDB header:transferase Chain: A: PDB Molecule:shikimate kinase; PDBTitle: structural basis for shikimate-binding specificity of helicobacter2 pylori shikimate kinase
3 | c3trfB_ |
|  | 99.9 | 33 | PDB header:transferase Chain: B: PDB Molecule:shikimate kinase; PDBTitle: structure of a shikimate kinase (arok) from coxiella burnetii
4 | c2pt5D_ |
|  | 99.9 | 34 | PDB header:transferase Chain: D: PDB Molecule:shikimate kinase; PDBTitle: crystal structure of shikimate kinase (aq_2177) from aquifex aeolicus2 vf5
5 | d2iyva1 |
|  | 99.9 | 28 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK)
6 | d1viaa_ |
|  | 99.9 | 25 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK)
7 | d1kaga_ |
|  | 99.9 | 32 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Shikimate kinase (AroK)
8 | c3t61A_ |
|  | 99.9 | 19 | PDB header:transferase Chain: A: PDB Molecule:gluconokinase; PDBTitle: crystal structure of a gluconokinase from sinorhizobium meliloti 1021
9 | d1q3ta_ |
|  | 99.8 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
10 | c3nwjB_ |
|  | 99.8 | 27 | PDB header:transferase Chain: B: PDB Molecule:atsk2; PDBTitle: crystal structure of shikimate kinase from arabidopsis thaliana2 (atsk2)
11 | d1rkba_ |
|  | 99.8 | 20 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
12 | c3cm0A_ |
|  | 99.8 | 19 | PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of adenylate kinase from thermus2 thermophilus hb8
13 | d1knqa_ |
|  | 99.8 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Gluconate kinase
14 | c2bwjC_ |
|  | 99.8 | 16 | PDB header:transferase Chain: C: PDB Molecule:adenylate kinase 5; PDBTitle: structure of adenylate kinase 5
15 | c2rhmD_ |
|  | 99.8 | 18 | PDB header:unknown function Chain: D: PDB Molecule:putative kinase; PDBTitle: crystal structure of a putative kinase (caur_3907) from chloroflexus2 aurantiacus j-10-fl at 1.70 a resolution
16 | c3akcA_ |
|  | 99.8 | 19 | PDB header:transferase Chain: A: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of cmp kinase in complex with cdp and adp from2 thermus thermophilus hb8
17 | d1ak2a1 |
|  | 99.8 | 18 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
18 | d3adka_ |
|  | 99.8 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
19 | d1ckea_ |
|  | 99.8 | 19 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
20 | c2ar7A_ |
|  | 99.8 | 14 | PDB header:transferase Chain: A: PDB Molecule:adenylate kinase 4; PDBTitle: crystal structure of human adenylate kinase 4, ak4
21 | c2xb4A_ |
| not modelled | 99.8 | 15 | PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structures of zinc containing adenylate kinase from2 desulfovibrio gigas
22 | d1ukza_ |
| not modelled | 99.8 | 12 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
23 | d2cdna1 |
| not modelled | 99.8 | 20 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
24 | c3h0kA_ |
| not modelled | 99.7 | 12 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:upf0200 protein sso1041; PDBTitle: crystal structure of an adenylated kinase related protein from2 sulfolobus solfataricus to 3.25a
25 | d1teva_ |
| not modelled | 99.7 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
26 | c2ak3B_ |
| not modelled | 99.7 | 14 | PDB header:transferase (phosphotransferase) Chain: B: PDB Molecule:adenylate kinase isoenzyme-3; PDBTitle: the three-dimensional structure of the complex between2 mitochondrial matrix adenylate kinase and its substrate3 amp at 1.85 angstroms resolution
27 | c3hdtB_ |
| not modelled | 99.7 | 14 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative kinase; PDBTitle: crystal structure of putative kinase from clostridium symbiosum atcc2 14940
28 | c3be4A_ |
| not modelled | 99.7 | 16 | PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of cryptosporidium parvum adenylate kinase cgd5_3360
29 | c2h92C_ |
| not modelled | 99.7 | 18 | PDB header:transferase Chain: C: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of staphylococcus aureus cytidine2 monophosphate kinase in complex with cytidine-5'-3 monophosphate
30 | c3tlxA_ |
| not modelled | 99.7 | 18 | PDB header:transferase Chain: A: PDB Molecule:adenylate kinase 2; PDBTitle: crystal structure of pf10_0086, adenylate kinase from plasmodium2 falciparum
31 | d1qf9a_ |
| not modelled | 99.7 | 13 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
32 | d1zaka1 |
| not modelled | 99.7 | 10 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
33 | c2ql6H_ |
| not modelled | 99.7 | 12 | PDB header:signaling protein,transferase Chain: H: PDB Molecule:nicotinamide riboside kinase 1; PDBTitle: human nicotinamide riboside kinase (nrk1)
34 | d2ak3a1 |
| not modelled | 99.7 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
35 | c2if2C_ |
| not modelled | 99.7 | 16 | PDB header:transferase Chain: C: PDB Molecule:dephospho-coa kinase; PDBTitle: crystal structure of the putative dephospho-coa kinase from aquifex2 aeolicus, northeast structural genomics target qr72.
36 | c3akyA_ |
| not modelled | 99.7 | 18 | PDB header:adenylate kinase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: stability, activity and structure of adenylate kinase2 mutants
37 | d1zina1 |
| not modelled | 99.7 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
38 | d1e4va1 |
| not modelled | 99.7 | 12 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
39 | d1p3ja1 |
| not modelled | 99.7 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
40 | c3fdiA_ |
| not modelled | 99.7 | 13 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of uncharacterized protein from eubacterium2 ventriosum atcc 27560.
41 | d1akya1 |
| not modelled | 99.7 | 19 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
42 | d1jjva_ |
| not modelled | 99.7 | 22 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
43 | d1s3ga1 |
| not modelled | 99.7 | 13 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
44 | c2plrB_ |
| not modelled | 99.7 | 17 | PDB header:transferase Chain: B: PDB Molecule:probable thymidylate kinase; PDBTitle: crystal structure of dtmp kinase (st1543) from sulfolobus tokodaii2 strain7
45 | c2eu8B_ |
| not modelled | 99.7 | 15 | PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of a thermostable mutant of bacillus2 subtilis adenylate kinase (q199r)
46 | c2vliB_ |
| not modelled | 99.7 | 19 | PDB header:transferase Chain: B: PDB Molecule:antibiotic resistance protein; PDBTitle: structure of deinococcus radiodurans tunicamycin resistance2 protein
47 | c1s3gA_ |
| not modelled | 99.7 | 14 | PDB header:transferase Chain: A: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of adenylate kinase from bacillus2 globisporus
48 | c2yvuA_ |
| not modelled | 99.7 | 15 | PDB header:transferase Chain: A: PDB Molecule:probable adenylyl-sulfate kinase; PDBTitle: crystal structure of ape1195
49 | d1y63a_ |
| not modelled | 99.7 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
50 | d1zp6a1 |
| not modelled | 99.7 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Atu3015-like
51 | c3r8cB_ |
| not modelled | 99.7 | 20 | PDB header:transferase Chain: B: PDB Molecule:cytidylate kinase; PDBTitle: crystal structure of cytidylate kinase (cmk) from mycobacterium2 abscessus
52 | d1m8pa3 |
| not modelled | 99.7 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:ATP sulfurylase C-terminal domain
53 | c2gksB_ |
| not modelled | 99.7 | 20 | PDB header:transferase Chain: B: PDB Molecule:bifunctional sat/aps kinase; PDBTitle: crystal structure of the bi-functional atp sulfurylase-aps kinase from2 aquifex aeolicus, a chemolithotrophic thermophile
54 | d2bdta1 |
| not modelled | 99.6 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Atu3015-like
55 | d1vhta_ |
| not modelled | 99.6 | 20 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
56 | c2rh5B_ |
| not modelled | 99.6 | 23 | PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: structure of apo adenylate kinase from aquifex aeolicus
57 | d4tmka_ |
| not modelled | 99.6 | 19 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
58 | c2ak2A_ |
| not modelled | 99.6 | 18 | PDB header:phosphotransferase Chain: A: PDB Molecule:adenylate kinase isoenzyme-2; PDBTitle: adenylate kinase isoenzyme-2
59 | c2jatA_ |
| not modelled | 99.6 | 11 | PDB header:transferase Chain: A: PDB Molecule:deoxyguanosine kinase; PDBTitle: structure of deoxyadenosine kinase from m.mycoides with2 products dcmp and a flexible dcdp bound
60 | c2ccjA_ |
| not modelled | 99.6 | 13 | PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of s. aureus thymidylate kinase complexed2 with thymidine monophosphate
61 | c1m8pB_ |
| not modelled | 99.6 | 17 | PDB header:transferase Chain: B: PDB Molecule:sulfate adenylyltransferase; PDBTitle: crystal structure of p. chrysogenum atp sulfurylase in the t-state
62 | c1zakB_ |
| not modelled | 99.6 | 12 | PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: adenylate kinase from maize in complex with the inhibitor2 p1,p5-bis(adenosine-5'-)pentaphosphate (ap5a)
63 | c2grjH_ |
| not modelled | 99.6 | 19 | PDB header:transferase Chain: H: PDB Molecule:dephospho-coa kinase; PDBTitle: crystal structure of dephospho-coa kinase (ec 2.7.1.24)2 (dephosphocoenzyme a kinase) (tm1387) from thermotoga maritima at3 2.60 a resolution
64 | d1qhxa_ |
| not modelled | 99.6 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Chloramphenicol phosphotransferase
65 | c2pbrB_ |
| not modelled | 99.6 | 21 | PDB header:transferase Chain: B: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of thymidylate kinase (aq_969) from aquifex aeolicus2 vf5
66 | d1m7gb_ |
| not modelled | 99.6 | 13 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Adenosine-5'phosphosulfate kinase (APS kinase)
67 | c3lv8A_ |
| not modelled | 99.6 | 23 | PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: 1.8 angstrom resolution crystal structure of a thymidylate kinase2 (tmk) from vibrio cholerae o1 biovar eltor str. n16961 in complex3 with tmp, thymidine-5'-diphosphate and adp
68 | c1ankA_ |
| not modelled | 99.6 | 13 | PDB header:transferase(phosphotransferase) Chain: A: PDB Molecule:adenylate kinase; PDBTitle: the closed conformation of a highly flexible protein: the2 structure of e. coli adenylate kinase with bound amp and3 amppnp
69 | c2ia5C_ |
| not modelled | 99.6 | 13 | PDB header:transferase Chain: C: PDB Molecule:polynucleotide kinase; PDBTitle: t4 polynucleotide kinase/phosphatase with bound sulfate and2 magnesium.
70 | d1khta_ |
| not modelled | 99.6 | 11 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
71 | d1p5zb_ |
| not modelled | 99.6 | 11 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
72 | d1uj2a_ |
| not modelled | 99.6 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Phosphoribulokinase/pantothenate kinase
73 | d1uf9a_ |
| not modelled | 99.6 | 22 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
74 | d1ki9a_ |
| not modelled | 99.5 | 13 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
75 | c2z0hA_ |
| not modelled | 99.5 | 14 | PDB header:transferase Chain: A: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of thymidylate kinase in complex with dtdp2 and adp from thermotoga maritima
76 | c2qroB_ |
| not modelled | 99.5 | 13 | PDB header:transferase Chain: B: PDB Molecule:deoxycytidine kinase; PDBTitle: human deoxycytidine kinase damp, udp, mg ion product complex
77 | c2f6rA_ |
| not modelled | 99.5 | 17 | PDB header:transferase Chain: A: PDB Molecule:bifunctional coenzyme a synthase; PDBTitle: crystal structure of bifunctional coenzyme a synthase (coa synthase):2 (18044849) from mus musculus at 1.70 a resolution
78 | c2wwiC_ |
| not modelled | 99.5 | 17 | PDB header:transferase Chain: C: PDB Molecule:thymidilate kinase, putative; PDBTitle: plasmodium falciparum thymidylate kinase in complex with2 aztmp and adp
79 | d1gkya_ |
| not modelled | 99.5 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
80 | c3gmtB_ |
| not modelled | 99.5 | 14 | PDB header:transferase Chain: B: PDB Molecule:adenylate kinase; PDBTitle: crystal structure of adenylate kinase from burkholderia pseudomallei
81 | c1znyA_ |
| not modelled | 99.5 | 14 | PDB header:transferase Chain: A: PDB Molecule:guanylate kinase; PDBTitle: crystal structure of mycobacterium tuberculosis guanylate kinase in2 complex with gdp
82 | c1xnjB_ |
| not modelled | 99.5 | 18 | PDB header:transferase Chain: B: PDB Molecule:bifunctional 3'-phosphoadenosine 5'-phosphosulfate PDBTitle: aps complex of human paps synthetase 1
83 | d1m7ga_ |
| not modelled | 99.5 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Adenosine-5'phosphosulfate kinase (APS kinase)
84 | d1nksa_ |
| not modelled | 99.5 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
85 | d1nn5a_ |
| not modelled | 99.5 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
86 | d1lw7a2 |
| not modelled | 99.5 | 10 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
87 | d2ocpa1 |
| not modelled | 99.5 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
88 | d1x6va3 |
| not modelled | 99.5 | 20 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Adenosine-5'phosphosulfate kinase (APS kinase)
89 | d1znwa1 |
| not modelled | 99.5 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
90 | c2w0sB_ |
| not modelled | 99.5 | 20 | PDB header:transferase Chain: B: PDB Molecule:thymidylate kinase; PDBTitle: crystal structure of vaccinia virus thymidylate kinase2 bound to brivudin-5'-monophosphate
91 | d1gsia_ |
| not modelled | 99.5 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
92 | c1ly1A_ |
| not modelled | 99.5 | 15 | PDB header:transferase Chain: A: PDB Molecule:polynucleotide kinase; PDBTitle: structure and mechanism of t4 polynucleotide kinase
93 | d1ly1a_ |
| not modelled | 99.5 | 15 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
94 | c3asyB_ |
| not modelled | 99.5 | 14 | PDB header:transferase Chain: B: PDB Molecule:uridine kinase; PDBTitle: ligand-free structure of uridine kinase from thermus thermophilus hb8
95 | c1ueiB_ |
| not modelled | 99.5 | 16 | PDB header:transferase Chain: B: PDB Molecule:uridine-cytidine kinase 2; PDBTitle: crystal structure of human uridine-cytidine kinase 22 complexed with a feedback-inhibitor, utp
96 | d1tmka_ |
| not modelled | 99.4 | 12 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
97 | c2qorA_ |
| not modelled | 99.4 | 16 | PDB header:transferase Chain: A: PDB Molecule:guanylate kinase; PDBTitle: crystal structure of plasmodium vivax guanylate kinase
98 | c3tr0A_ |
| not modelled | 99.4 | 13 | PDB header:transferase Chain: A: PDB Molecule:guanylate kinase; PDBTitle: structure of guanylate kinase (gmk) from coxiella burnetii
99 | c1z6gA_ |
| not modelled | 99.4 | 14 | PDB header:transferase Chain: A: PDB Molecule:guanylate kinase; PDBTitle: crystal structure of guanylate kinase from plasmodium falciparum
100 | c3cr8C_ |
| not modelled | 99.4 | 24 | PDB header:transferase Chain: C: PDB Molecule:sulfate adenylyltranferase, adenylylsulfate PDBTitle: hexameric aps kinase from thiobacillus denitrificans
101 | d1bifa1 |
| not modelled | 99.4 | 10 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
102 | d1yj5a2 |
| not modelled | 99.3 | 12 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
103 | c3ch4B_ |
| not modelled | 99.3 | 11 | PDB header:transferase Chain: B: PDB Molecule:phosphomevalonate kinase; PDBTitle: the crystal structure of human phosphomavelonate kinase at2 1.8 a resolution
104 | d1k6ma1 |
| not modelled | 99.3 | 11 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
105 | d1s96a_ |
| not modelled | 99.3 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
106 | d1lvga_ |
| not modelled | 99.2 | 16 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
107 | c1k6mA_ |
| not modelled | 99.2 | 11 | PDB header:transferase, hydrolase Chain: A: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6- PDBTitle: crystal structure of human liver 6-phosphofructo-2-2 kinase/fructose-2,6-bisphosphatase
108 | c3zvmA_ |
| not modelled | 99.2 | 13 | PDB header:hydrolase/transferase/dna Chain: A: PDB Molecule:bifunctional polynucleotide phosphatase/kinase; PDBTitle: the structural basis for substrate recognition by mammalian2 polynucleotide kinase 3' phosphatase
109 | d2vp4a1 |
| not modelled | 99.2 | 17 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
110 | c1bifA_ |
| not modelled | 99.2 | 10 | PDB header:bifunctional enzyme Chain: A: PDB Molecule:6-phosphofructo-2-kinase/ fructose-2,6-bisphosphatase; PDBTitle: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase bifunctional2 enzyme complexed with atp-g-s and phosphate
111 | c2vp4D_ |
| not modelled | 99.2 | 13 | PDB header:transferase Chain: D: PDB Molecule:deoxynucleoside kinase; PDBTitle: structural studies of nucleoside analog and feedback2 inhibitor binding to drosophila melanogaster3 multisubstrate deoxyribonucleoside kinase
112 | d1kgda_ |
| not modelled | 99.1 | 13 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
113 | d1deka_ |
| not modelled | 99.1 | 14 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nucleotide and nucleoside kinases
114 | c2i1vB_ |
| not modelled | 99.1 | 9 | PDB header:transferase, hydrolase Chain: B: PDB Molecule:6-phosphofructo-2-kinase/fructose-2,6- PDBTitle: crystal structure of pfkfb3 in complex with adp and2 fructose-2,6-bisphosphate
115 | c2p5tD_ |
| not modelled | 99.1 | 13 | PDB header:transcription regulator Chain: D: PDB Molecule:pezt; PDBTitle: molecular and structural characterization of the pezat chromosomal2 toxin-antitoxin system of the human pathogen streptococcus pneumoniae
116 | c3c8uA_ |
| not modelled | 99.1 | 17 | PDB header:transferase Chain: A: PDB Molecule:fructokinase; PDBTitle: crystal structure of putative fructose transport system kinase2 (yp_612366.1) from silicibacter sp. tm1040 at 1.95 a resolution
117 | c1yj5B_ |
| not modelled | 99.1 | 14 | PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme
118 | c1lw7A_ |
| not modelled | 99.0 | 13 | PDB header:transferase Chain: A: PDB Molecule:transcriptional regulator nadr; PDBTitle: nadr protein from haemophilus influenzae
119 | c3crqA_ |
| not modelled | 98.9 | 24 | PDB header:transferase Chain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel
120 | c2gesA_ |
| not modelled | 98.9 | 19 | PDB header:transferase Chain: A: PDB Molecule:pantothenate kinase; PDBTitle: pantothenate kinase from mycobacterium tuberculosis (mtpank) in2 complex with a coenzyme a derivative, form-i (rt)

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0