Phyre 2 alignment of P28249 with c1lypA_

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Job Description | P28249
Confidence | 4.61% | Date | Thu Jan 5 11:44:34 GMT 2012
Rank | 5 | Aligned Residues | 28
% Identity | 25% | Template | c1lypA_
PDB info | PDB header:lipopolysaccharide-binding protein | Chain: A: PDB Molecule:cap18; | PDBTitle: the solution structure of the active domain of cap18: a2 lipopolysaccharide binding protein from rabbit leukocytes
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 590 | . | . | . | . | . | . | . | . | . | 600 | . | . | . |  |  | . | . | . | . | . | . | 610 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | A | K | R | R | L | N | D | W | A | E | R | N | K | D | . | . | S | R | N | G | K | D | V | K | K | L | L | E | K | M
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Template Sequence |  | L | R | K | R | L | R | K | F | R | N | K | I | K | E | K | L | K | K | I | G | Q | K | I | Q | G | L | L | P | K | L
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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