08/01/2012 21:55:20 : INFO  : Run start: Sun Jan  8 21:55:19 GMT 2012
08/01/2012 21:55:23 : INFO  : Initialised job
08/01/2012 21:55:24 : INFO  : Renaming log file 'phyre2_20120108_215519.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/2dd95a9402b803cf/phyre_20120108_215519.log'
08/01/2012 21:55:24 : INFO  : Initialised job:
Sequence
>batch____
MRRFLTTLMILLVVLVAGLSALVLLVNPNDFRDYMVKQVAARSGYQLQLDGPLRWHVWPQ
LSILSGRMSLTAQGASQPLVRADNMRLDVALLPLLSHQLSVKQVMLKGAVIQLTPQTEAV
RSEDAPVAPRDNTLPDLSDDRGWSFDISSLKVADSVLVFQHEDDEQVTIRNIRLQMEQDP
QHRGSFEFSGRVNRDQRDLTISLNGTVDASDYPHDLTAAIEQINWQLQGADLPKQGIQGQ
GSFQAQWQESHKRLSFNQISLTANDSTLSGQAQVTLTEKPEWQLRLQFPQLNLDNLIPLN
ETANGENGAAQQGQSQSTLPRPVISSRIDEPAYQGLQGFTADILLQASNVRWRGMNFTDV
ATQMTNKSGLLEITQLQGKLNGGQVSLPGTLDATSINPRINFQPRLENVEIGTILKAFNY
PISLTGKMSLAGDFSGADIDADAFRHNWQGQAHVEMTDTRMEGMNFQQMIQQAVERNGGD
VKAAENFDNVTRLDRFTTDLTLKDGVVTLNDMQGQSPVLALTGEGMLNLADQTCDTQFDI
RVVGGWNGESKLIDFLKETPVPLRVYGNWQQLNYSLQVDQLLRKHLQDEAKRRLNDWAER
NKDSRNGKDVKKLLEKM

08/01/2012 21:55:25 : INFO  : Checked sequence
08/01/2012 21:55:26 : INFO  : Finding homologues with PSI-BLAST
08/01/2012 21:55:27 : INFO  : PSI-BLAST 3 iterations
08/01/2012 21:57:26 : INFO  : PSI-BLAST 5 iterations
08/01/2012 21:59:31 : INFO  : Finished PSI-BLAST
08/01/2012 21:59:32 : INFO  : Running Buildali to generate a3m file
08/01/2012 22:09:36 : INFO  : Converting to HMM
08/01/2012 22:09:49 : INFO  : Calibrating HMM
08/01/2012 22:10:11 : INFO  : Searching HMM database
08/01/2012 22:24:10 : INFO  : Finished buildali
08/01/2012 22:24:11 : INFO  : Predicting secondary structure
08/01/2012 22:24:14 : INFO  : Predicted secondary structure (PSI-Pred)
08/01/2012 22:24:15 : INFO  : Predicting Disordered regions
08/01/2012 22:24:18 : INFO  : Predicted Disorder (Disopred)
08/01/2012 22:24:19 : INFO  : Running memsat_svm check
08/01/2012 22:27:19 : INFO  : Running memsat_svm full
08/01/2012 22:31:43 : INFO  : Predicted Transmembrane (memsat_svm) ID '2dd95a9402b803cf'
08/01/2012 22:31:44 : INFO  : Initialising fold library search
08/01/2012 22:31:45 : INFO  : Initialised search input
08/01/2012 22:31:46 : INFO  : Building Ensemble models
08/01/2012 22:31:48 : INFO  : Building hh.c2qtsA_.model.1.pdb
08/01/2012 22:31:57 : INFO  : Building c2qtsA_.1.pdb
08/01/2012 22:32:09 : INFO  : Building c3o0rC_.2.pdb
08/01/2012 22:32:17 : INFO  : Building c1wx4B_.3.pdb
08/01/2012 22:32:26 : INFO  : Building d1ewfa1.4.pdb
08/01/2012 22:32:34 : INFO  : Building c1lypA_.5.pdb
08/01/2012 22:32:43 : INFO  : Building c1usvB_.6.pdb
08/01/2012 22:32:52 : INFO  : Building c2ayaA_.7.pdb
08/01/2012 22:33:01 : INFO  : Building c1w8xP_.8.pdb
08/01/2012 22:33:10 : INFO  : Building c1bp1A_.9.pdb
08/01/2012 22:33:19 : INFO  : Building c1ynmA_.10.pdb
08/01/2012 22:33:27 : INFO  : Building d1wyka_.11.pdb
08/01/2012 22:33:36 : INFO  : Building c1kxfA_.12.pdb
08/01/2012 22:33:45 : INFO  : Building c3h4zC_.13.pdb
08/01/2012 22:33:54 : INFO  : Building d3cx5c2.14.pdb
08/01/2012 22:34:03 : INFO  : Building c1spfA_.15.pdb
08/01/2012 22:34:11 : INFO  : Building d1vcpa_.16.pdb
08/01/2012 22:34:20 : INFO  : Building d1puga_.17.pdb
08/01/2012 22:34:28 : INFO  : Building c3kojA_.18.pdb
08/01/2012 22:34:37 : INFO  : Building c1x4qA_.19.pdb
08/01/2012 22:34:46 : INFO  : Building d1ep5a_.20.pdb
08/01/2012 22:35:05 : INFO  : Finished HH model building
08/01/2012 22:35:06 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
08/01/2012 22:35:54 : INFO  : html domain output complete ID '2dd95a9402b803cf'
08/01/2012 22:40:04 : INFO  : Run end  : Sun Jan  8 22:40:03 GMT 2012
