Phyre 2 alignment of P28249 with c1yycA_

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Job Description | P28249
Confidence | 1.84% | Date | Thu Jan 5 11:44:34 GMT 2012
Rank | 43 | Aligned Residues | 38
% Identity | 18% | Template | c1yycA_
PDB info | PDB header:structural genomics, unknown function | Chain: A: PDB Molecule:putative late embryogenesis abundant protein; | PDBTitle: solution structure of a putative late embryogenesis2 abundant (lea) protein at2g46140.1
Resolution | UNK

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 530 | . | . | . | . | . | . | . | . | . | 540 | . | . | . | . | . | . | . | . | . | 550 | . | . | . | . | . | . | . | . |  | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | A | D | Q | T | C | D | T | Q | F | D | I | R | V | V | G | G | W | N | G | E | S | K | L | I | D | F | L | K | E | . | T | P | V | P | L | R | V | Y | G | N | W | Q | Q | L | N | Y | S
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | T | D | W | D | I | D | Y | Q | L | D | I | G | L | . | . | . | . | . | . | . | . | T | F | D | I | P | V | V | G | D | I | T | I | P | V | S | T | Q | G | E | I | K | L | P | S | L | R
Template Known Secondary structure |  | S | S |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  | T | T | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 133 | . | . | . | . | . | . | 140 | . | . | . | . | . |  |  |  |  |  |  |  |  | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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