187 d2hoxa1 Probab=99.92   E-value=3e-22  Score=150.37  Aligned_columns=301  Identities=15%

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC--CHHHEEEECCHHHHHHHHHHHHHHCCCCCCCE--------EECCC
Q ss_conf             788775346677889999999999999982759--87677883897899999999998344677835--------84477
Q batch____        51 YAAVHRGIHTLSAQATEKMENVRKRASLFINAR--SAEELVFVRGTTEGINLVANSWGNSNVRAGDN--------IIISQ  120 (406)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~--~~~~i~~~~g~t~al~~a~~~~~~~~~~~~d~--------v~~~~  120 (406)
                      |...+.+.+..+....+.+++.-..+....|..  ++.+|++++|+++++++++..+    .+|||.        |++..
T Consensus        87 ~~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL----~~pGd~v~~~~p~~v~~~~  162 (425)
T d2hoxa1          87 WHRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISL----SPNMTATPDAPESKVVAHA  162 (425)
T ss_dssp             TTTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHH----SCCTTTCTTSCCEEEEECS
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHH----CCCCCCCCCCCCCEEEECC
T ss_conf             554565456643445289999999998850886788776999468899999999986----4888612356774357300


Q ss_pred             CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCCCCCCCCEEECCCCCCCCCCHHHHHHHHCCCCEEEEEEE
Q ss_conf             73167999999975308827997017776478988998620011232023202445632210344432001111136622
Q batch____       121 MEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFDEKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVD  200 (406)
Q Consensus       121 ~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D  200 (406)
                      |.|+.........    |.++..++      +|.+.++...+.++.++++++|+||+|...+       +..++++++.|
T Consensus       163 p~y~~~~~~~~~~----~~~~~~~~------~d~~~~~~~~~~~~~~~~i~~P~NPtG~v~~-------a~~~~~~~i~D  225 (425)
T d2hoxa1         163 PFYPVFREQTKYF----DKKGYVWA------GNAANYVNVSNPEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYD  225 (425)
T ss_dssp             SCCHHHHHHHHHS----CCTTEEEE------EEGGGGTTCSCGGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEE
T ss_pred             HHHHHHHHHHHHC----CCCCCCCC------CCHHHHHHHCCCCCEEEEECCCCCCCCEEEE-------EEECCCEEEEE
T ss_conf             2377899999855----99744424------7988999724888579998178888560654-------23239689971


Q ss_pred             CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC--CEEEEEC-HHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHCCCC
Q ss_conf             21002245556544420256630100466885--1799987-88998655530476444631012222200000000236
Q batch____       201 GAQAVMHHPVDVQALDCDFYVFSGHKLYGPTG--IGILYVK-EALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAG  277 (406)
Q Consensus       201 ~~~~~~~~~~~~~~~~~d~~~~~~~k~~g~~g--~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (406)
                      +++..............++.+.+.+|.++..|  .|++++. +.....+...                      ......
T Consensus       226 e~y~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~----------------------~~~~~~  283 (425)
T d2hoxa1         226 MVYYWPHYTPIKYKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNY----------------------MTKNTE  283 (425)
T ss_dssp             CTTCSTTTSCCCSCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHH----------------------HHHHTS
T ss_pred             CCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHH----------------------HHCCCC
T ss_conf             4323433233334568549998155101233231018996898999999986----------------------410577


Q ss_pred             CCCHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHCCCEEECCC-------------CCCCCE
Q ss_conf             65667765679999999876----------4567776665435899999850898399167-------------888426
Q batch____       278 TPNTGGIIGLGAALEYVSAL----------GLNNIAEYEQNLMHYALSQLESVPDLTLYGP-------------QNRLGV  334 (406)
Q Consensus       278 t~~~~~~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~~~  334 (406)
                      ..+.....+...+++.....          .....++...++...+...+.....+.+...             .....+
T Consensus       284 ~~s~~~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f  363 (425)
T d2hoxa1         284 GTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSY  363 (425)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSE
T ss_pred             CCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCE
T ss_conf             73689999999996020134565555489999999999999999999998635763003456554322100137787616


Q ss_pred             EEEEECCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             999827999899999998689099972365741000148985799977877999999999999999998
Q batch____       335 IAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHR  403 (406)
Q Consensus       335 v~~~~~~~~~~~l~~~L~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~~~t~edid~~v~~l~~i~r  403 (406)
                      +++.++..+.+.+.+.|.++||.+++|+.|..       .++++|||+..  |+|++|++++.|++++|
T Consensus       364 ~w~~~~~~~~~~~~~lL~e~GI~v~pGs~FG~-------~~~~vRiSl~~--~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         364 AWVKCEWEEDKDCYQTFQNGRINTQNGVGFEA-------SSRYVRLSLIK--TQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             EEEEECSGGGCSHHHHHHHTTEECEEGGGGTS-------CTTEEEEECSS--CHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCHHHHHHHHHHCCEEEECCCCCCC-------CCCEEEEEECC--CHHHHHHHHHHHHHHHH
T ss_conf             99867898089999999966949971702389-------88659999139--98999999999999872