36 c3polA_ Probab=99.95   E-value=1.7e-26  Score=163.04  Aligned_columns=232  Identities=17%

Q ss_pred             CCCEEEEECCCCCC-CCCCCCCCCCCCEEEECCEEHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHCCC
Q ss_conf             87249995589883-43100128983100167175799999999957997799994798899999851342001220135
Q batch____         2 TNLKAVIPVAGLGM-HMLPATKAIPKEMLPIVDKPMIQYIVDEIVAAGIKEILLVTHASKNAVENHFDTSYELESLLEQR   80 (297)
Q Consensus         2 ~~mk~iIlAaG~Gt-Rl~p~t~~~pK~llpi~gkplI~~~l~~l~~~gi~~I~Ivv~~~~~~i~~~l~~~~~~~~~~~~~   80 (297)
                      .+|||||++||.|| ||.      ||||+||+|||||+|+|+++.++|+.+.++|+++..+........           
T Consensus         8 ~~~~~vIi~A~~~s~Rl~------~K~Ll~v~Gkpli~~~i~~l~~~~~~~~iiVv~~~~~~~~~~~~~-----------   70 (262)
T c3polA_           8 KHMKHIVIPARFSSSRLP------GKPLLLIHDRPMILRVVDQAKKVEGFDDLCVATDDERIAEICRAE-----------   70 (262)
T ss_dssp             CCCEEEEEECCSCCTTST------TGGGSEETTEEHHHHHHHHHTTCCSCSEEEEEESCHHHHHHHHTT-----------
T ss_pred             CCCEEEEEECCCCCCCCC------CCEEEEECCEEHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHC-----------
T ss_conf             887599994487788998------711443685657999999998489982899976958889999753-----------


Q ss_pred             CCCHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHC--CCCCEEEEECCEEEECCCHHHCCCCHHHHHHHHHHC-
Q ss_conf             53013455420033697599984187474289999746535--998599995785997685122012789999999853-
Q batch____        81 VKRQLLAEVQSICPPGVTIMNVRQGEPLGLGHSILCARPAI--GDNPFVVVLPDVVIDDASADPLRYNLAAMIARFNET-  157 (297)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~Gta~al~~~~~~~--~~~~~~v~~gD~i~~~~~~~~~~~~~~~~~~~~~~~-  157 (297)
                                     +.++.+..+....++.+++..+....  ..+.++++.+|.      +.+....+..+++.+... 
T Consensus        71 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~d~------p~i~~~~i~~~~~~~~~~~  129 (262)
T c3polA_          71 ---------------GVDVVLTSADHPSGTDRLSEVARIKGWDADDIIVNVQGDE------PLLPAQLVQQVAKLLVDKP  129 (262)
T ss_dssp             ---------------TCEEEECCSCCCCHHHHHHHHHHHHTCCTTCEEEECCTTC------TTCCHHHHHHHHHHHHHCT
T ss_pred             ---------------CCCEEEECCCCCCCHHHHHHHHHHHCCCCCCEEEEEECCC------EEECHHHHHHHHHHHHHCC
T ss_conf             ---------------9949996488765126899999850046898899982895------3335999999999999769


Q ss_pred             CCEEEEEEEECCCCCCCEEEEECCCCCCCCCEEEEEEEEECCCC----------CCCCCCEEEEEEEEEECHHHHHHHHH
Q ss_conf             98299999857888763299967755555760356578865788----------65565318998777358999987573
Q batch____       158 GRSQVLAKRMPGDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQ----------PQTLDSDIMAVGRYVLSADIWPELER  227 (297)
Q Consensus       158 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~~eKp~~----------~~~~~~~~i~~Giy~~~~~~~~~l~~  227 (297)
                      ......+..+..++..|+.  ........+...++..+.+.+..          +......+.++|+|.+.++.++.+..
T Consensus       130 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  207 (262)
T c3polA_         130 NCSMSTLCEPIHALDEFQR--DSIVKVVMSKQNEALYFSRATIPYDRDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVT  207 (262)
T ss_dssp             TCSEEEEEEECCCHHHHHC--TTSCEEEECSSSBEEEEESSCCSCCSSSSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTT
T ss_pred             CCEEEEEEEECCCHHHCCC--CCCEEEEECCCCCEEEEECCCCCCCCCCCHHHHHHCCCHHHHHCCHHHHHHHHHHHHHH
T ss_conf             9357564454048767067--77128998689958773023442222210123220121012111213322999998760


Q ss_pred             CCCCCCCCEEHHHHHHHHHHHCCEEEEEECCE-EEECCCHHHHHHHH
Q ss_conf             35677775148999999997388389995545-88789978999999
Q batch____       228 TQPGAWGRIQLTDAIAELAKKQSVDAMLMTGD-SYDCGKKMGYMQAF  273 (297)
Q Consensus       228 ~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~g~-w~dig~p~~y~~A~  273 (297)
                      ...+........+.++.+....++.++..++. |+||+||+||..|+
T Consensus       208 ~~~~~~e~~~~~~~l~~i~~g~~v~~~~~~~~~~~dIdtpeDL~~ae  254 (262)
T c3polA_         208 WEMGKLEKLESLEQLRVLENGHRIAIAVAEANLPPGVDTQADLDRLN  254 (262)
T ss_dssp             SCCCHHHHHHTCTTHHHHHTTCCEEEEECSSCCCCCCCSHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf             48762013445778999968980699981620200688999999999