Phyre 2 alignment of Q46919 with c3k1qA_

Return to main results | Retrieve Phyre Job Id

Job Description | Q46919
Confidence | 5.55% | Date | Thu Jan 5 12:35:52 GMT 2012
Rank | 17 | Aligned Residues | 24
% Identity | 13% | Template | c3k1qA_
PDB info | PDB header:virus | Chain: A: PDB Molecule:vp1, the protein that forms the mrna-capping | PDBTitle: backbone model of an aquareovirus virion by cryo-electron2 microscopy and bioinformatics
Resolution | 4.50 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | F | F | M | D | T | M | E | P | L | E | W | L | Q | W | V | L | I | P | R | M | H | D | L | L | D
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Template Sequence |  | F | I | E | N | P | L | D | Y | R | D | W | T | E | F | I | . | H | D | R | A | L | A | F | V | G
Template Known Secondary structure |  |  |  |  |  |  | S |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 74 | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . |  | . | 90 | . | . | . | . | . | . | .

Download: | Text version | FASTA pairwise alignment | 3D Model in PDB format

View in Jmol

|  | Close Jmol

Send structure to FirstGlance for more viewing options

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys |
Disclaimer
Terms and Conditions