Phyre 2 alignment of Q46919 with c3gkhA_

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Job Description | Q46919
Confidence | 1.88% | Date | Thu Jan 5 12:35:52 GMT 2012
Rank | 73 | Aligned Residues | 22
% Identity | 9% | Template | c3gkhA_
PDB info | PDB header:transport protein | Chain: A: PDB Molecule:niemann-pick c1 protein; | PDBTitle: npc1(ntd)
Resolution | 1.81 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 34 | . | . | . | . | . | 40 | . | . | . | . | . |  |  |  |  |  |  |  |  | . | . | . | . | 50 | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Query Sequence |  | F | N | S | T | Q | P | F | F | M | D | T | M | . | . | . | . | . | . | . | . | E | P | L | E | W | L | Q | W | V | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | A | P | S | S | N | D | K | A | L | G | L | L | C | G | K | D | A | D | A | C | Q | A | T | N | W | I | E | Y | M | F
Template Known Secondary structure |  |  | T | T | S | S | S | B | T |  |  |  |  | S | S | S |  | G | G | G |  |  |  |  |  |  |  |  |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 165 | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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