271 d1uasa2 Probab=91.12   E-value=1  Score=23.24  Aligned_columns=239  Identities=17%

Q ss_pred             CHHHHHHHHHHHHH-----CCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC
Q ss_conf             59999875888997-----5998999867888889987564612214744389999999999999989889999701301
Q batch____       178 DLDGISEKLPYLKK-----LGVTALYLNPVFKAPSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHS  252 (604)
Q Consensus       178 dl~Gi~~kLdYLk~-----LGv~~i~L~Pi~~~~~~~GY~~~dy~~id~~~Gt~~dfk~LV~~~H~~Gi~VilD~V~NH~  252 (604)
                      +-+.|.+.++.|++     +|++.|.|=-=......-.+  .++..=..+|-.  .|+.|++.+|++||+.-+=+-+   
T Consensus        24 ~e~~i~~~~~~l~~~gl~~~G~~~~~iDdGW~~~~~d~~--G~~~~~~~~FP~--Gl~~l~~~i~~~G~k~Giw~~p---   96 (273)
T d1uasa2          24 NEQIIRETADALVNTGLAKLGYQYVNIDDCWAEYSRDSQ--GNFVPNRQTFPS--GIKALADYVHAKGLKLGIYSDA---   96 (273)
T ss_dssp             CHHHHHHHHHHHHHTSHHHHTCCEEECCSSCBCSSCCTT--SCCCBCTTTCTT--CHHHHHHHHHHTTCEEEEEEES---
T ss_pred             CHHHHHHHHHHHHHCCCHHCCCEEEEECCCCCCCCCCCC--CCEEECCCCCCC--CHHHHHHHHHHCCCCCEEEECC---
T ss_conf             999999999999974971419719997388678777777--765355140687--1899999999889812388308---


Q ss_pred             CCCCHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCE
Q ss_conf             68775554125666655578777765420456898702225757751337879999999999899999999765269977
Q batch____       253 GDSHAWFDRHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDG  332 (604)
Q Consensus       253 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpdln~~~~~vr~~l~~~~~~~~~~Wl~e~~gvDG  332 (604)
                                                                  ....++..+|.+++++..-+..+.      +.|||.
T Consensus        97 --------------------------------------------g~~~~d~~~P~~~~~~~~~~~~~~------~wGvd~  126 (273)
T d1uasa2          97 --------------------------------------------GSQTCSNKMPGSLDHEEQDVKTFA------SWGVDY  126 (273)
T ss_dssp             --------------------------------------------SSBCTTSSSBCCTTCHHHHHHHHH------HHTCCE
T ss_pred             --------------------------------------------CCCCCCCCCHHHHHHHHHHHHHHH------HCCCCE
T ss_conf             --------------------------------------------871277876678899999999999------739986


Q ss_pred             EEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCCCCC
Q ss_conf             99648542445567655368999999986553796699960268716765003556432432211389998614200013
Q batch____       333 WRLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVEDAAMNYRGFTFPLWGFLANTDISYD  412 (604)
Q Consensus       333 fR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ligE~~~~~~~~~~~~~~d~~~~~~~f~~~~~~~~~~~~~~~~  412 (604)
                      +.+|....-....     .+..+.+.+++++..++.++..=.+...............+....                 
T Consensus       127 iK~D~~~~~~~~~-----~~~~~~~~~al~~~g~~~~~~~c~~~~~~~~~~~~~~~~~~R~s~-----------------  184 (273)
T d1uasa2         127 LKYDNCNDAGRSV-----MERYTRMSNAMKTYGKNIFFSLCEWGKENPATWAGRMGNSWRTTG-----------------  184 (273)
T ss_dssp             EEEECCCCTTCCH-----HHHHHHHHHHHHHHCTTSEEEEESTTTTCGGGTGGGTCSEEECSS-----------------
T ss_pred             EEECCCCCCCCCH-----HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHCCCEEEECC-----------------
T ss_conf             9645777876217-----889999999999748927999428888863001442078899659-----------------


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHCCCCCCCC
Q ss_conf             45679999999999998745876521015512577764432012686999999999999808824997681015589768
Q batch____       413 PQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGLDGKND  492 (604)
Q Consensus       413 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~hD~~r~~~~~~~~~~~~~~a~~~llt~pG~P~iyyG~E~g~~~~~d  492 (604)
                       .......-...................++-.+..-....  .+...+.+..+++..++   |.|++..++         
T Consensus       185 -D~~~~w~~~~~~~~~~~~~~~~~g~~~~~DpDml~~g~~--~lt~~e~r~~~~l~~~~---~spL~~~~D---------  249 (273)
T d1uasa2         185 -DIADNWGSMTSRADENDQWAAYAGPGGWNDPDMLEVGNG--GMSEAEYRSHFSIWALA---KAPLLIGCD---------  249 (273)
T ss_dssp             -CCCSSHHHHHHHHHHHHTTGGGCBTTBEEECCCCCTTSS--SSCHHHHHHHHHHHHHT---TCCEEECSC---------
T ss_pred             -CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHH---CCCEEECCC---------
T ss_conf             -888887889999998750188511887678663345887--89999999999999996---385232278---------


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHH--HHHHHH
Q ss_conf             3224768812135551799999--999999
Q batch____       493 PFCRKPFPWQVEKQDTALFALY--QRMIAL  520 (604)
Q Consensus       493 ~~~r~~~~W~~~~~~~~l~~~~--k~Li~l  520 (604)
                                -.+.+.+.++++  ++||++
T Consensus       250 ----------l~~~~~~~l~~L~N~~~iai  269 (273)
T d1uasa2         250 ----------VRSMSQQTKNILSNSEVIAV  269 (273)
T ss_dssp             ----------TTSCCHHHHHHHTCHHHHHH
T ss_pred             ----------CCCCCHHHHHHHCCHHHHHH
T ss_conf             ----------00088899986223888852