141 c3civA_ Probab=97.94   E-value=0.002  Score=41.78  Aligned_columns=156  Identities=15%

Q ss_pred             HHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCH-----HHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHH
Q ss_conf             88899759989998678888899875646122147443899-----9999999999998988999970130168775554
Q batch____       186 LPYLKKLGVTALYLNPVFKAPSVHKYDTEDYRHVDPQFGGD-----GALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFD  260 (604)
Q Consensus       186 LdYLk~LGv~~i~L~Pi~~~~~~~GY~~~dy~~id~~~Gt~-----~dfk~LV~~~H~~Gi~VilD~V~NH~~~~~~~f~  260 (604)
                      |+.||++|+|+|-|        .+.+...++......+|+.     +.++.+|+.|+++||+||||              
T Consensus        32 l~~l~~~G~N~vRi--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~A~~~Gl~Vil~--------------   89 (316)
T c3civA_          32 MRALAEQPFNWVTL--------AFAGLMEHPGDPAIAYGPPVTVSDDEIASMAELAHALGLKVCLK--------------   89 (316)
T ss_dssp             HHHHHHSSCSEEEE--------EEEEEESSTTCCCCBCSTTTBCCHHHHHHHHHHHHHTTCEEEEE--------------
T ss_pred             HHHHHHCCCCEEEE--------ECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE--------------
T ss_conf             99999839989998--------23247777677654447677679789999999998689879997--------------


Q ss_pred             HCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCHHH
Q ss_conf             12566665557877776542045689870222575775133787999999999989999999976526997799648542
Q batch____       261 RHNRGTGGACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGWRLDVVHM  340 (604)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpdln~~~~~vr~~l~~~~~~~~~~Wl~e~~gvDGfR~D~~~~  340 (604)
                                         .......+...........+...-..-.....++.....-......+ .++.-+-+     
T Consensus        90 -------------------~h~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~nE~~~~-----  144 (316)
T c3civA_          90 -------------------PTVNCRDGTWRGEIRFEKEHGPDLESWEAWFGSYSDMMAHYAHVAKR-TGCEMFCV-----  144 (316)
T ss_dssp             -------------------EEEEETTCCCGGGCCCSBSCCTTSSBHHHHHHHHHHHHHHHHHHHHH-TTCSEEEE-----
T ss_pred             -------------------CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH-CCCCEEEC-----
T ss_conf             -------------------23588887655566767860125576999999999999879999874-19985850-----


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHCCCCC
Q ss_conf             445567655368999999986553796699960268716765003556
Q batch____       341 LGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQADVED  388 (604)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ligE~~~~~~~~~~~~~~d  388 (604)
                      ............+++++.+.+++..|..+++...+............|
T Consensus       145 gne~~~~~~~~~~~~~~~~~ir~~dp~~~~~~~~~~~~~~~~~~~~~D  192 (316)
T c3civA_         145 GCEMTTAEPHEAMWRETIARVRTEYDGLVTYNCNHGREEHVRFWDAVD  192 (316)
T ss_dssp             EESCTTTTTCHHHHHHHHHHHHHHCCSEEEEEEETTCTTTCSCGGGSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf             677776001467899999999974699779944688633345333457