24 c1cygA_ Probab=100.00  E-value=0  Score=600.56  Aligned_columns=441  Identities=23%

Q ss_pred             CCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--HHHHCCC
Q ss_conf             21101677798703204577745565446532345556653466576665555543425775999987588--8997599
Q batch____       117 PQWAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLP--YLKKLGV  194 (604)
Q Consensus       117 p~w~~~~v~Y~i~~drF~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGdl~Gi~~kLd--YLk~LGv  194 (604)
                      |.+|++.||||||||||+|||+.|+........                 .......++||||+||++|||  |||+|||
T Consensus         6 ~~~w~~~~iY~i~~drF~~g~~~~~~~~~~~~~-----------------~~~~~~~~~gGd~~gi~~kLd~pYl~~LGv   68 (680)
T c1cygA_           6 KVNFTSDVVYQIVVDRFVDGNTSNNPSGALFSS-----------------GCTNLRKYCGGDWQGIINKINDGYLTDMGV   68 (680)
T ss_dssp             TTCCTTCCEEEECGGGTCCSCGGGCCCGGGBCG-----------------GGCSTTSBCCCCHHHHHHHHHTSTTTTTTC
T ss_pred             HHHHCCCCEEEEEEEECCCCCCCCCCCCCCCCC-----------------CCCCCCCCCCCCHHHHHHHHCHHHHHHCCC
T ss_conf             156415746999320013788888876655666-----------------765544415785999997628877997299


Q ss_pred             CEEEECCCCC-----------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHCC
Q ss_conf             8999867888-----------88998756461221474438999999999999998988999970130168775554125
Q batch____       195 TALYLNPVFK-----------APSVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSHAWFDRHN  263 (604)
Q Consensus       195 ~~i~L~Pi~~-----------~~~~~GY~~~dy~~id~~~Gt~~dfk~LV~~~H~~Gi~VilD~V~NH~~~~~~~f~~~~  263 (604)
                      |+|||||||+           ..++|||++.||++|||+|||++|||+||++||++||+||||+|+||++.++.++..+.
T Consensus        69 ~~i~l~P~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~Gt~~dfk~lV~~aH~~Gi~VilD~V~NH~s~~~~~~~~~~  148 (680)
T c1cygA_          69 TAIWISQPVENVFSVMNDASGSASYHGYWARDFKKPNPFFGTLSDFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYM  148 (680)
T ss_dssp             CEEEECCCEEECCCCCSSSSCCCSTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTST
T ss_pred             CEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCCC
T ss_conf             89998775146665555666767777756562433563328999999999999988988999996233688775432000


Q ss_pred             CCCC----CCCCCCCCCCCCCEEECCCCC------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf             6666----555787777654204568987------022257577513378799999999998999999997652699779
Q batch____       264 RGTG----GACHNPESPWRDWYSFSDDGT------ALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKAPWNMDGW  333 (604)
Q Consensus       264 ~~~~----~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~lpdln~~~~~vr~~l~~~~~~~~~~Wl~e~~gvDGf  333 (604)
                      ....    ........+....+.......      ...+..+.++||||++||+||++|++.    +++|+  ++|||||
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~----~~~w~--~~giDGf  222 (680)
T c1cygA_         149 ENGRLYDNGTLLGGYTNDANMYFHHNGGTTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDA----VKMWI--DMGIDGI  222 (680)
T ss_dssp             TTTCEEETTEEEECSTTCTTCCBCCSCBCCCSSHHHHHSSBSTTEEEBCTTSHHHHHHHHHH----HHHHH--TTTCCEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHH----HHHHH--HCCCCEE
T ss_conf             15734546530467887656653366887556656310057788885468999999999999----99998--4458837


Q ss_pred             EECCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCC------HHHHHCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf             964854244556765536899999998655379669996026871------67650035564324322113899986142
Q batch____       334 RLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDA------RQWLQADVEDAAMNYRGFTFPLWGFLANT  407 (604)
Q Consensus       334 R~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ligE~~~~~------~~~~~~~~~d~~~~~~~f~~~~~~~~~~~  407 (604)
                      |||++++++.        +|++++++.++...| .++++|.|...      ..........+.+++. +...++..+.+ 
T Consensus       223 R~D~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-  291 (680)
T c1cygA_         223 RMDAVKHMPF--------GWQKSLMDEIDNYRP-VFTFGEWFLSENEVDANNHYFANESGMSLLDFR-FGQKLRQVLRN-  291 (680)
T ss_dssp             EESCGGGSCS--------HHHHHHHHHHHHHCC-CEEEECCCCCTTCCCHHHHHHHHHSSCEEBCHH-HHHHHHHHHTT-
T ss_pred             EECCCCCCCH--------HHHHHHHHHHHHHCC-EEEEEEEECCCCCCCCHHHHHCCCCCCEEECCH-HHHHHHHHHCC-
T ss_conf             7614103899--------899999999862188-089998644775322013330367771454207-99999998604-


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHCCC
Q ss_conf             00013456799999999999987458765210155125777644320126869999999999998088249976810155
Q batch____       408 DISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIYYGDEVGL  487 (604)
Q Consensus       408 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~hD~~r~~~~~~~~~~~~~~a~~~llt~pG~P~iyyG~E~g~  487 (604)
                            .......+...+......+  ......++|++|||+.|+.+..+. .+++++|++++|++||+|+||||+|+||
T Consensus       292 ------~~~~~~~~~~~~~~~~~~~--~~~~~~v~f~~nHD~~R~~~~~~~-~~~~~~a~~~~l~~pG~P~iyyG~E~g~  362 (680)
T c1cygA_         292 ------NSDNWYGFNQMIQDTASAY--DEVLDQVTFIDNHDMDRFMIDGGD-PRKVDMALAVLLTSRGVPNIYYGTEQYM  362 (680)
T ss_dssp             ------CSCCHHHHHHHHHHHHHHC--TTGGGCEECSCCTTSCCSCCTTCC-THHHHHHHHHHHHSSSEEEEETTGGGTC
T ss_pred             ------CCCCHHHHHHHHHHHHHHC--CCCCCEEEECCCCCCCHHHHHCCC-HHHHHHHHHHHHHHCCCEEEECCEECCC
T ss_conf             ------8778999999998876418--862432896057875503231799-9999999999999089719995635243


Q ss_pred             CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCCEEEEECCCCEEEEEEEECCEEEEEEEECCCCCEEE-
Q ss_conf             8976832247688121355517999999999998868323168579997279979999984892799999888996798-
Q batch____       488 DGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKSQALRHGGCQVLYAEDNVVVFVRVLNQQRVLVAINRGEACEVV-  566 (604)
Q Consensus       488 ~~~~d~~~r~~~~W~~~~~~~~l~~~~k~Li~lRk~~~aL~~g~~~~~~~~~~v~af~R~~~~~~~lV~~N~~~~~~~~-  566 (604)
                      ++.+++.+|.+|.|.  ..+.++++++|+|++|||+||||+.|.++.+..++++++|.|+.++++++|++|++...+.. 
T Consensus       363 ~~~~~~~~r~~~~~~--~~~~~~~~~~~~L~~lR~~~~al~~G~~~~~~~~~~v~af~R~~~~~~~~v~~N~~~~~~~~~  440 (680)
T c1cygA_         363 TGNGDPNNRKMMSSF--NKNTRAYQVIQKLSSLRRNNPALAYGDTEQRWINGDVYVYERQFGKDVVLVAVNRSSSSNYSI  440 (680)
T ss_dssp             CCCSTTGGGCCCCCC--CSCSHHHHHHHHHHHHHHHCHHHHHCEEEEEEECSSEEEEEEEETTEEEEEEEECCSSCCEEE
T ss_pred             CCCCCCCCCCCCCCC--CCCCHHHHHHHHHHHHHHHCHHHHCCEEEEEEECCCEEEEEEECCCCEEEEECCCCCCCCCCC
T ss_conf             687686543215889--888589999999999987683221571789950794899999629942998404555554311


Q ss_pred             ------ECCCCCCCCCCEEECCCCEEEE----EEEEEECCCEEEEE
Q ss_conf             ------0554565332202036741660----04899789628999
Q batch____       567 ------LPASPFLNAVQWQCKEGHGQLT----DGILALPAISATVW  602 (604)
Q Consensus       567 ------lp~~~~~~~~~~~~~~~~~~~~----~g~l~lp~~s~~vw  602 (604)
                            +|.+.+.............++.    ..++++++.++.+|
T Consensus       441 ~~~~~~~~~gt~~~~~~~~~~~~~~t~~~~~~~~t~~~~~~~~~~~  486 (680)
T c1cygA_         441 TGLFTALPAGTYTDQLGGLLDGNTIQVGSNGSVNAFDLGPGEVGVW  486 (680)
T ss_dssp             CSCBCSSCSEEECCTTTTTTCCCCEEECGGGBBCCEEECTTCEEEE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEEECCCCCEEE
T ss_conf             2222232212222100134555202320456403564067752000