50 d1pama4 Probab=100.00  E-value=0  Score=539.10  Aligned_columns=374  Identities=23%

Q ss_pred             CCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH--H
Q ss_conf             08889821101677798703204577745565446532345556653466576665555543425775999987588--8
Q batch____       111 DVPDIGPQWAADQIFYQIFPDRFARSLPREAEQDHVYYHHAAGQEIILRDWDEPVTAQAGGSTFYGGDLDGISEKLP--Y  188 (604)
Q Consensus       111 ~~~~~~p~w~~~~v~Y~i~~drF~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gGdl~Gi~~kLd--Y  188 (604)
                      +.....|+|++++||||||||||++|+++++.                 .+............++||||+||++|||  |
T Consensus         3 ~~~~~~~~w~~~~viY~i~~~~F~~~d~~~~~-----------------~~~~~~~~~~~~~~~~gGd~~gi~~kLD~~Y   65 (406)
T d1pama4           3 DTSVSNKQNFSTDVIYQIFTDRFSDGNPANNP-----------------TGAAFDGSCTNLRLYCGGDWQGIINKINDGY   65 (406)
T ss_dssp             TTSTTCCSCCTTCCEEECCGGGTCCSCGGGCC-----------------CGGGBCTTCCSTTSBCCCCHHHHHHHHHTTT
T ss_pred             CCCCCCHHHHHCCEEEEEECCCCCCCCCCCCC-----------------CCCCCCCCCCCCCCCCCCCHHHHHHHCCHHH
T ss_conf             88888833530282899821113577867676-----------------6666666766655646886899997449888


Q ss_pred             HHHCCCCEEEECCCCCCC------------CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
Q ss_conf             997599899986788888------------99875646122147443899999999999999898899997013016877
Q batch____       189 LKKLGVTALYLNPVFKAP------------SVHKYDTEDYRHVDPQFGGDGALLRLRHNTQQLGMRLVLDGVFNHSGDSH  256 (604)
Q Consensus       189 Lk~LGv~~i~L~Pi~~~~------------~~~GY~~~dy~~id~~~Gt~~dfk~LV~~~H~~Gi~VilD~V~NH~~~~~  256 (604)
                      ||+||||+||||||++++            ++|||+|.||++|||+|||++|||+||++||++||+||||+|+||++.++
T Consensus        66 Lk~LGv~~I~L~Pi~~~~~~~~~~~~~~~~~~~GY~~~d~~~id~~~Gt~~dfk~Lv~~~H~~Gi~VilD~V~NH~s~~~  145 (406)
T d1pama4          66 LTGMGITAIWISQPVENIYSVINYSGVNNTAYHGYWARDFKKTNPAYGTMQDFKNLIDTAHAHNIKVIIDFAPNHTSPAS  145 (406)
T ss_dssp             TGGGTCCEEEECCCEEECCCCEEETTEEECCTTSCSEEEEEEECTTTCCHHHHHHHHHHHHHTTCEEEEEECTTEEEECC
T ss_pred             HHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
T ss_conf             99629989998776346554445566676777774657454337343899999999999987898999976045246876


Q ss_pred             HHHHHCCCCCCC----------CCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             555412566665----------5578777765420456898702225757751337879999999999899999999765
Q batch____       257 AWFDRHNRGTGG----------ACHNPESPWRDWYSFSDDGTALDWLGYASLPKLDYQSESLVNEIYRGEDSIVRHWLKA  326 (604)
Q Consensus       257 ~~f~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpdln~~~~~vr~~l~~~~~~~~~~Wl~e  326 (604)
                      .|++........          ....................+..+.++..+|+||+++|+||+++++.    +++|+  
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~----~~~w~--  219 (406)
T d1pama4         146 SDDPSFAENGRLYDNGNLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDA----IKMWL--  219 (406)
T ss_dssp             SSCTTSTTTTCEEETTEEEECSTTCTTCCBCCSCBCCCSSHHHHHHSBSTTEEEBCTTSHHHHHHHHHH----HHHHH--
T ss_pred             CCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH----HHHHH--
T ss_conf             321000024655567664666776666734666777777767620068553543158988999999999----99998--


Q ss_pred             HCCCCEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHC------CCCCCCCCCCCCHHHH
Q ss_conf             2699779964854244556765536899999998655379669996026871676500------3556432432211389
Q batch____       327 PWNMDGWRLDVVHMLGEAGGARNNMQHVAGITEAAKETQPEAYIVGEHFGDARQWLQA------DVEDAAMNYRGFTFPL  400 (604)
Q Consensus       327 ~~gvDGfR~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ligE~~~~~~~~~~~------~~~d~~~~~~~f~~~~  400 (604)
                      ++||||||+|++++++        .++++++++.+++ .++++++||.+.........      ...++.+++. +...+
T Consensus       220 e~giDGfR~D~~~~~~--------~~~~~~~~~~~~~-~~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  289 (406)
T d1pama4         220 DLGVDGIRVDAVKHMP--------FGWQKSFMATINN-YKPVFTFGEWFLGVNEISPEYHQFANESGMSLLDFR-FAQKA  289 (406)
T ss_dssp             HTTCCEEEETTGGGSC--------HHHHHHHHHHHHH-HSCCEEEECCCCCTTCCCHHHHHHHHHSSSEEBCHH-HHHHH
T ss_pred             HCCCCEEEECCHHHCC--------HHHHHHHHHHHHH-CCCEEEEEEECCCCHHHHHHHHHCCCCCCCEEECCH-HHHHH
T ss_conf             4499788875756589--------8999999999851-596399983116752453466523666771220717-99999


Q ss_pred             HHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf             99861420001345679999999999998745876521015512577764432012686999999999999808824997
Q batch____       401 WGFLANTDISYDPQQIDAQTCMAWMDNYRAGLSHQQQLRMFNQLDSHDTARFKTLLGRDIARLPLAVVWLFTWPGVPCIY  480 (604)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~~~hD~~r~~~~~~~~~~~~~~a~~~llt~pG~P~iy  480 (604)
                      ...+.+       .......+...+......+..  ....++|++|||+.|+.+..+. .+++++|++++||+||+||||
T Consensus       290 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~--~~~~~~f~~nHD~~R~~~~~~~-~~~~~~a~~~~~~~pG~P~iy  359 (406)
T d1pama4         290 RQVFRD-------NTDNMYGLKAMLEGSEVDYAQ--VNDQVTFIDNHDMERFHTSNGD-RRKLEQALAFTLTSRGVPAIY  359 (406)
T ss_dssp             HHHHTT-------CSSCHHHHHHHHHHHHHHSTT--GGGCEECSCCTTSCCSCCTTSC-HHHHHHHHHHHHHSSSEEEEE
T ss_pred             HHHHHC-------CCCCHHHHHHHHHHHHHHCCC--HHHCEEECCCCCCCHHHHHCCC-HHHHHHHHHHHHHHCCCEEEE
T ss_conf             999708-------887789999998523431567--0210431678762235430582-899999999999828971987


Q ss_pred             CCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCC
Q ss_conf             6810155897683224768812135551799999999999886832316
Q batch____       481 YGDEVGLDGKNDPFCRKPFPWQVEKQDTALFALYQRMIALRKKSQALRH  529 (604)
Q Consensus       481 yG~E~g~~~~~d~~~r~~~~W~~~~~~~~l~~~~k~Li~lRk~~~aL~~  529 (604)
                      ||||+|++|..++++|.+|+|.  ..++++++++|+|++|||++|||+.
T Consensus       360 ~G~E~g~~g~~d~~~r~~~~~~--~~~~~~~~~~~~L~~lR~~~paL~~  406 (406)
T d1pama4         360 YGSEQYMSGGNDPDNRARLPSF--STTTTAYQVIQKLAPLRKSNPAIAY  406 (406)
T ss_dssp             TTGGGTCCCCSTTGGGCCCCCC--CSCSHHHHHHHHHTTHHHHCHHHHC
T ss_pred             CCHHCCCCCCCCHHHCCCCCCC--CCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             6710150788563224547887--5641899999999999987621359


