Phyre 2 Results for P21365

Email | l.a.kelley@imperial.ac.uk
Description | P21365
Date | Thu Jan 5 11:38:11 GMT 2012
Unique Job ID | 2a8dc698076db141

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c2kvlA_ |
|  | 23.2 | 26 | PDB header:viral protein Chain: A: PDB Molecule:major outer capsid protein vp7; PDBTitle: nmr structure of the c-terminal domain of vp7
2 | c3hd7A_ |
|  | 17.8 | 8 | PDB header:exocytosis Chain: A: PDB Molecule:vesicle-associated membrane protein 2; PDBTitle: helical extension of the neuronal snare complex into the membrane,2 spacegroup c 1 2 1
3 | c1ciiA_ |
|  | 13.5 | 18 | PDB header:transmembrane protein Chain: A: PDB Molecule:colicin ia; PDBTitle: colicin ia
4 | d1k8rb_ |
|  | 9.5 | 30 | Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ras-binding domain, RBD
5 | d2hgca1 |
|  | 9.0 | 21 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:YjcQ-like
6 | c2hgcA_ |
|  | 9.0 | 21 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:yjcq protein; PDBTitle: solution nmr structure of the yjcq protein from bacillus2 subtilis. northeast structural genomics target sr346.
7 | d1k8ke_ |
|  | 8.7 | 8 | Fold:Arp2/3 complex 21 kDa subunit ARPC3 Superfamily:Arp2/3 complex 21 kDa subunit ARPC3 Family:Arp2/3 complex 21 kDa subunit ARPC3
8 | c1rh5C_ |
|  | 8.6 | 17 | PDB header:protein transport Chain: C: PDB Molecule:secbeta; PDBTitle: the structure of a protein conducting channel
9 | d1rh5c_ |
|  | 8.6 | 17 | Fold:Single transmembrane helix Superfamily:Sec-beta subunit Family:Sec-beta subunit
10 | c3go5A_ |
|  | 8.2 | 0 | PDB header:gene regulation Chain: A: PDB Molecule:multidomain protein with s1 rna-binding domains; PDBTitle: crystal structure of a multidomain protein with nucleic acid binding2 domains (sp_0946) from streptococcus pneumoniae tigr4 at 1.40 a3 resolution
11 | d1pf4a2 |
|  | 8.2 | 5 | Fold:ABC transporter transmembrane region Superfamily:ABC transporter transmembrane region Family:ABC transporter transmembrane region
12 | c1m45B_ |
|  | 8.2 | 6 | PDB header:cell cycle protein Chain: B: PDB Molecule:iq2 motif from myo2p, a class v myosin; PDBTitle: crystal structure of mlc1p bound to iq2 of myo2p, a class v2 myosin
13 | c1q2iA_ |
|  | 7.7 | 0 | PDB header:antitumor protein Chain: A: PDB Molecule:pnc27; PDBTitle: nmr solution structure of a peptide from the mdm-2 binding2 domain of the p53 protein that is selectively cytotoxic to3 cancer cells
14 | c1unhD_ |
|  | 7.4 | 71 | PDB header:cell cycle Chain: D: PDB Molecule:cyclin-dependent kinase 5 activator 1; PDBTitle: structural mechanism for the inhibition of cdk5-p25 by2 roscovitine, aloisine and indirubin.
15 | d1unld_ |
|  | 7.4 | 71 | Fold:Cyclin-like Superfamily:Cyclin-like Family:Cyclin
16 | c1kq8A_ |
|  | 7.3 | 19 | PDB header:transcription Chain: A: PDB Molecule:hepatocyte nuclear factor 3 forkhead homolog 1; PDBTitle: solution structure of winged helix protein hfh-1
17 | d1kq8a_ |
|  | 7.3 | 19 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain
18 | c3jqoV_ |
|  | 7.0 | 11 | PDB header:transport protein Chain: V: PDB Molecule:traf protein; PDBTitle: crystal structure of the outer membrane complex of a type iv2 secretion system
19 | c4a1aM_ |
|  | 7.0 | 5 | PDB header:ribosome Chain: M: PDB Molecule:60s ribosomal protein l5; PDBTitle: t.thermophila 60s ribosomal subunit in complex with2 initiation factor 6. this file contains 5s rrna,3 5.8s rrna and proteins of molecule 3.
20 | c1zp0D_ |
|  | 6.9 | 13 | PDB header:oxidoreductase Chain: D: PDB Molecule:small cytochrome binding protein; PDBTitle: crystal structure of mitochondrial respiratory complex ii2 bound with 3-nitropropionate and 2-thenoyltrifluoroacetone
21 | d1cg5a_ |
| not modelled | 6.8 | 21 | Fold:Globin-like Superfamily:Globin-like Family:Globins
22 | c3mkuA_ |
| not modelled | 6.6 | 13 | PDB header:transport protein Chain: A: PDB Molecule:multi antimicrobial extrusion protein (na(+)/drug PDBTitle: structure of a cation-bound multidrug and toxin compound extrusion2 (mate) transporter
23 | c1e17A_ |
| not modelled | 6.4 | 10 | PDB header:dna binding domain Chain: A: PDB Molecule:afx; PDBTitle: solution structure of the dna binding domain of the human2 forkhead transcription factor afx (foxo4)
24 | c3co7C_ |
| not modelled | 6.2 | 16 | PDB header:transcription/dna Chain: C: PDB Molecule:forkhead box protein o1; PDBTitle: crystal structure of foxo1 dbd bound to dbe2 dna
25 | d1myta_ |
| not modelled | 6.2 | 19 | Fold:Globin-like Superfamily:Globin-like Family:Globins
26 | d2fx0a2 |
| not modelled | 6.1 | 0 | Fold:Tetracyclin repressor-like, C-terminal domain Superfamily:Tetracyclin repressor-like, C-terminal domain Family:Tetracyclin repressor-like, C-terminal domain
27 | d1hdsa_ |
| not modelled | 6.1 | 7 | Fold:Globin-like Superfamily:Globin-like Family:Globins
28 | c2lkeA_ |
| not modelled | 5.9 | 30 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-m; PDBTitle: structures and interaction analyses of the integrin alpha-m beta-22 cytoplasmic tails
29 | c3g73A_ |
| not modelled | 5.9 | 10 | PDB header:transcription/dna Chain: A: PDB Molecule:forkhead box protein m1; PDBTitle: structure of the foxm1 dna binding
30 | c1geaA_ |
| not modelled | 5.9 | 25 | PDB header:neuropeptide Chain: A: PDB Molecule:pituitary adenylate cyclase activating PDBTitle: receptor-bound conformation of pacap21
31 | c2ciuA_ |
| not modelled | 5.9 | 0 | PDB header:protein transport Chain: A: PDB Molecule:import inner membrane translocase subunit tim21 PDBTitle: structure of the ims domain of the mitochondrial import2 protein tim21 from s. cerevisiae
32 | c1n2dC_ |
| not modelled | 5.8 | 6 | PDB header:cell cycle Chain: C: PDB Molecule:iq2 and iq3 motifs from myo2p, a class v myosin; PDBTitle: ternary complex of mlc1p bound to iq2 and iq3 of myo2p, a2 class v myosin
33 | c2lkjA_ |
| not modelled | 5.6 | 33 | PDB header:cell adhesion Chain: A: PDB Molecule:integrin alpha-m; PDBTitle: structures and interaction analyses of the integrin alpha-m beta-22 cytoplasmic tails
34 | d2lhba_ |
| not modelled | 5.6 | 7 | Fold:Globin-like Superfamily:Globin-like Family:Globins
35 | d1d5va_ |
| not modelled | 5.6 | 6 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain
36 | c2wwbB_ |
| not modelled | 5.6 | 7 | PDB header:ribosome Chain: B: PDB Molecule:protein transport protein sec61 subunit gamma; PDBTitle: cryo-em structure of the mammalian sec61 complex bound to the2 actively translating wheat germ 80s ribosome
37 | c2rlwA_ |
| not modelled | 5.6 | 14 | PDB header:toxin Chain: A: PDB Molecule:plnf; PDBTitle: three-dimensional structure of the two peptides that2 constitute the two-peptide bacteriocin plantaracin ef
38 | c2qq4A_ |
| not modelled | 5.5 | 20 | PDB header:metal binding protein Chain: A: PDB Molecule:iron-sulfur cluster biosynthesis protein iscu; PDBTitle: crystal structure of iron-sulfur cluster biosynthesis2 protein iscu (ttha1736) from thermus thermophilus hb8
39 | c1yhuW_ |
| not modelled | 5.5 | 14 | PDB header:oxygen storage/transport Chain: W: PDB Molecule:hemoglobin b1a chain; PDBTitle: crystal structure of riftia pachyptila c1 hemoglobin reveals novel2 assembly of 24 subunits.
40 | d3bpya1 |
| not modelled | 5.5 | 10 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain
41 | d1scta_ |
| not modelled | 5.5 | 23 | Fold:Globin-like Superfamily:Globin-like Family:Globins
42 | d2hfha_ |
| not modelled | 5.4 | 13 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain
43 | c2zs1D_ |
| not modelled | 5.4 | 8 | PDB header:oxygen storage, oxygen transport Chain: D: PDB Molecule:extracellular giant hemoglobin major globin subunit b1; PDBTitle: structural basis for the heterotropic and homotropic interactions of2 invertebrate giant hemoglobin
44 | d1sxja1 |
| not modelled | 5.4 | 9 | Fold:post-AAA+ oligomerization domain-like Superfamily:post-AAA+ oligomerization domain-like Family:DNA polymerase III clamp loader subunits, C-terminal domain
45 | d1c17m_ |
| not modelled | 5.4 | 11 | Fold:F1F0 ATP synthase subunit A Superfamily:F1F0 ATP synthase subunit A Family:F1F0 ATP synthase subunit A
46 | c1g2cN_ |
| not modelled | 5.3 | 13 | PDB header:viral protein Chain: N: PDB Molecule:fusion protein (f); PDBTitle: human respiratory syncytial virus fusion protein core
47 | d2a07f1 |
| not modelled | 5.3 | 6 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:Forkhead DNA-binding domain
48 | c2wukD_ |
| not modelled | 5.3 | 17 | PDB header:cell cycle Chain: D: PDB Molecule:septum site-determining protein diviva; PDBTitle: diviva n-terminal domain, f17a mutant
49 | c2nq2A_ |
| not modelled | 5.3 | 16 | PDB header:metal transport Chain: A: PDB Molecule:hypothetical abc transporter permease protein PDBTitle: an inward-facing conformation of a putative metal-chelate2 type abc transporter.
50 | d1hbra_ |
| not modelled | 5.3 | 0 | Fold:Globin-like Superfamily:Globin-like Family:Globins
51 | c2c0kB_ |
| not modelled | 5.3 | 11 | PDB header:oxygen transport Chain: B: PDB Molecule:hemoglobin; PDBTitle: the structure of hemoglobin from the botfly gasterophilus2 intestinalis
52 | c3gztF_ |
| not modelled | 5.2 | 28 | PDB header:virus Chain: F: PDB Molecule:outer capsid glycoprotein vp7; PDBTitle: vp7 recoated rotavirus dlp
53 | c3bjqA_ |
| not modelled | 5.2 | 14 | PDB header:viral protein Chain: A: PDB Molecule:phage-related protein; PDBTitle: crystal structure of a phage-related protein (bb3626) from bordetella2 bronchiseptica rb50 at 2.05 a resolution
54 | d2gdma_ |
| not modelled | 5.2 | 9 | Fold:Globin-like Superfamily:Globin-like Family:Globins
55 | c3h8aF_ |
| not modelled | 5.1 | 40 | PDB header:lyase/protein binding Chain: F: PDB Molecule:rnase e; PDBTitle: crystal structure of e. coli enolase bound to its cognate rnase e2 recognition domain