17/01/2012 02:38:32 : INFO  : Run start: Tue Jan 17 02:38:31 GMT 2012
17/01/2012 02:38:35 : INFO  : Initialised job
17/01/2012 02:38:36 : INFO  : Renaming log file 'phyre2_20120117_023831.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/2a8dc698076db141/phyre_20120117_023831.log'
17/01/2012 02:38:36 : INFO  : Initialised job:
Sequence
>batch____
MSITAQSVYRDTGNFFRNQFMTILLVSLLCAFITVVLGHVFSPSDAQLAQLNDGVPVSGS
SGLFDLVQNMSPEQQQILLQASAASTFSGLIGNAILAGGVILIIQLVSAGQRVSALRAIG
ASAPILPKLFILIFLTTLLVQIGIMLVVVPGIIMAILLALAPVMLVQDKMGVFASMRSSM
RLTWANMRLVAPAVLSWLLAKTLLLLFASSFAALTPEIGAVLANTLSNLISAILLIYLFR
LYMLIRQ

17/01/2012 02:38:37 : INFO  : Checked sequence
17/01/2012 02:38:38 : INFO  : Finding homologues with PSI-BLAST
17/01/2012 02:38:39 : INFO  : PSI-BLAST 3 iterations
17/01/2012 02:40:14 : INFO  : PSI-BLAST 5 iterations
17/01/2012 02:41:55 : INFO  : Finished PSI-BLAST
17/01/2012 02:41:56 : INFO  : Running Buildali to generate a3m file
17/01/2012 02:46:08 : INFO  : Converting to HMM
17/01/2012 02:46:09 : INFO  : Calibrating HMM
17/01/2012 02:46:20 : INFO  : Searching HMM database
17/01/2012 02:51:47 : INFO  : Finished buildali
17/01/2012 02:51:47 : INFO  : Predicting secondary structure
17/01/2012 02:51:52 : INFO  : Predicted secondary structure (PSI-Pred)
17/01/2012 02:51:53 : INFO  : Predicting Disordered regions
17/01/2012 02:51:55 : INFO  : Predicted Disorder (Disopred)
17/01/2012 02:51:56 : INFO  : Running memsat_svm check
17/01/2012 02:53:48 : INFO  : Running memsat_svm full
17/01/2012 02:58:40 : INFO  : Predicted Transmembrane (memsat_svm) ID '2a8dc698076db141'
17/01/2012 02:58:41 : INFO  : Initialising fold library search
17/01/2012 02:58:43 : INFO  : Initialised search input
17/01/2012 02:58:44 : INFO  : Building Ensemble models
17/01/2012 02:58:46 : INFO  : Building hh.c2kvlA_.model.1.pdb
17/01/2012 02:58:54 : INFO  : Building c2kvlA_.1.pdb
17/01/2012 02:59:01 : INFO  : Building c3hd7A_.2.pdb
17/01/2012 02:59:10 : INFO  : Building c1ciiA_.3.pdb
17/01/2012 02:59:17 : INFO  : Building d1k8rb_.4.pdb
17/01/2012 02:59:24 : INFO  : Building d2hgca1.5.pdb
17/01/2012 02:59:32 : INFO  : Building c2hgcA_.6.pdb
17/01/2012 02:59:41 : INFO  : Building d1k8ke_.7.pdb
17/01/2012 02:59:48 : INFO  : Building c1rh5C_.8.pdb
17/01/2012 02:59:56 : INFO  : Building d1rh5c_.9.pdb
17/01/2012 03:00:04 : INFO  : Building c3go5A_.10.pdb
17/01/2012 03:00:12 : INFO  : Building d1pf4a2.11.pdb
17/01/2012 03:00:21 : INFO  : Building c1m45B_.12.pdb
17/01/2012 03:00:28 : INFO  : Building c1q2iA_.13.pdb
17/01/2012 03:00:36 : INFO  : Building c1unhD_.14.pdb
17/01/2012 03:00:44 : INFO  : Building d1unld_.15.pdb
17/01/2012 03:00:51 : INFO  : Building c1kq8A_.16.pdb
17/01/2012 03:01:02 : INFO  : Building d1kq8a_.17.pdb
17/01/2012 03:01:09 : INFO  : Building c3jqoV_.18.pdb
17/01/2012 03:01:17 : INFO  : Building c4a1aM_.19.pdb
17/01/2012 03:01:26 : INFO  : Building c1zp0D_.20.pdb
17/01/2012 03:01:43 : INFO  : Finished HH model building
17/01/2012 03:01:44 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
17/01/2012 03:03:08 : INFO  : html domain output complete ID '2a8dc698076db141'
17/01/2012 03:04:42 : WARN  : Failed to run assembler on model
17/01/2012 03:04:58 : INFO  : Run end  : Tue Jan 17 03:04:58 GMT 2012
