BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (60 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9XJJ7 Outer membrane lipoprotein Rz1 n=39 Tax=root Rep...    84   1e-15
UniRef50_Q9RIH3 Putative uncharacterized protein n=1 Tax=Xenorha...    46   3e-04

>UniRef50_Q9XJJ7 Outer membrane lipoprotein Rz1 n=39 Tax=root RepID=RZ1_BP933
          Length = 61

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 47/61 (77%), Gaps = 1/61 (1%)

Query: 1  MRKLKMMLCVMMLPLVVVGCTSKQSVS-QCVKPPRPPAWIMQPPPDWQTPLNGIISPSER 59
          MR+LKM LCV+MLPLVV  C S       CVKPP PPAWIMQP PDWQTPLNGIIS SER
Sbjct: 1  MRELKMKLCVLMLPLVVSACGSTPPAPVPCVKPPAPPAWIMQPAPDWQTPLNGIISSSER 60

Query: 60 G 60
          G
Sbjct: 61 G 61


>UniRef50_Q9RIH3 Putative uncharacterized protein n=1 Tax=Xenorhabdus nematophila
          RepID=Q9RIH3_XENNE
          Length = 69

 Score = 46.2 bits (108), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 1  MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPRPPAWIMQPPPDWQTPLNGIISPSERG 60
          M  LK +   M+  L +  C SK +V QC+KP  PPAW++Q PPDW+  LN I+  S   
Sbjct: 1  MPNLKSLSLAMICALTLSACMSKPNV-QCLKPLPPPAWMVQDPPDWRKTLNKIMYVSSEN 59


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q9RIH3 Putative uncharacterized protein n=1 Tax=Xenorha...    72   6e-12
UniRef50_Q9XJJ7 Outer membrane lipoprotein Rz1 n=39 Tax=root Rep...    68   1e-10

Sequences not found previously or not previously below threshold:


CONVERGED!
>UniRef50_Q9RIH3 Putative uncharacterized protein n=1 Tax=Xenorhabdus nematophila
          RepID=Q9RIH3_XENNE
          Length = 69

 Score = 71.7 bits (174), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 1  MRKLKMMLCVMMLPLVVVGCTSKQSVSQCVKPPRPPAWIMQPPPDWQTPLNGIISPSERG 60
          M  LK +   M+  L +  C SK +V QC+KP  PPAW++Q PPDW+  LN I+  S   
Sbjct: 1  MPNLKSLSLAMICALTLSACMSKPNV-QCLKPLPPPAWMVQDPPDWRKTLNKIMYVSSEN 59


>UniRef50_Q9XJJ7 Outer membrane lipoprotein Rz1 n=39 Tax=root RepID=RZ1_BP933
          Length = 61

 Score = 67.5 bits (163), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 45/61 (73%), Positives = 47/61 (77%), Gaps = 1/61 (1%)

Query: 1  MRKLKMMLCVMMLPLVVVGCTSKQSVS-QCVKPPRPPAWIMQPPPDWQTPLNGIISPSER 59
          MR+LKM LCV+MLPLVV  C S       CVKPP PPAWIMQP PDWQTPLNGIIS SER
Sbjct: 1  MRELKMKLCVLMLPLVVSACGSTPPAPVPCVKPPAPPAWIMQPAPDWQTPLNGIISSSER 60

Query: 60 G 60
          G
Sbjct: 61 G 61


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.294    0.124    0.387 

Lambda     K      H
   0.267   0.0381    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 283,948,369
Number of Sequences: 3077464
Number of extensions: 9855170
Number of successful extensions: 114114
Number of sequences better than 1.0e-01: 7
Number of HSP's better than  0.1 without gapping: 5
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 114089
Number of HSP's gapped (non-prelim): 16
length of query: 60
length of database: 1,040,396,356
effective HSP length: 32
effective length of query: 28
effective length of database: 941,917,508
effective search space: 26373690224
effective search space used: 26373690224
T: 11
A: 40
X1: 16 ( 6.8 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (20.4 bits)
S2: 87 (38.2 bits)