29 c3n6uA_ Probab=99.61   E-value=8.9e-15  Score=104.84  Aligned_columns=198  Identities=13%

Q ss_pred             CCCCCCCCCCHHHCCCCCHHHHHHCCCCCCCEEEEECCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33221001000000133101221001234420466448689777653254210010245553344544221223111123
Q batch____        93 NELVIGVDDTFPFSLLAPLIEAFYQHHSVTRLKFINGVLGGSWDALTQGRADIIVGAMHEPPSSSEFGFSRLGDLEQVFA  172 (309)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (309)
                      |.+++++....+..+++..+..+...+|++.+.+.+.........+..+..|.++......................++.
T Consensus         1 G~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~~~~l~~~~~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~   80 (205)
T c3n6uA_           1 GHITFAASPAIALAALPLALASFAREFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHDIDTDLEAQPLYVSDVVIV   80 (205)
T ss_dssp             CEEEEEECHHHHHTHHHHHHHHHHHHCTTCEEEEEECCTTTTHHHHHTTSCSEEEEEECGGGSCTTEEEEEEEECCEEEE
T ss_pred             CEEEEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHCCCCEEEEECCCCCCCCEEEEECCCCCEEEEE
T ss_conf             96999950667987899999999997899789999879589999987168738999446878740278741555216764


Q ss_pred             CCCCCHHHCCCCCCCHHHHCCCCEEEEECCCHHH-----HHHHHCCCCCCCEEEECCHHHHHHHHHCCCCEEECCHHHHH
Q ss_conf             5866301104788887698079869970884478-----98863045763036527978999999809918810099998
Q batch____       173 VAPHHPLALEEEPLNRRIIKRYRAIVVGDTAQAG-----ASTASQLLDEQEAITVFDFKTKLELQISGLGCGYLPRYLAQ  247 (309)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~gi~~lp~~~~~  247 (309)
                      ....++....   .++.++...+++.........     ................++...+..++..|.|++++|...+.
T Consensus        81 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (205)
T c3n6uA_          81 GQRQHPMANA---TRLAELQECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVVAHSDLLTTMPRTLYE  157 (205)
T ss_dssp             EETTCTTTTC---CSGGGGTTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHHHHTSSCBEEEEHHHHH
T ss_pred             ECCCCCCCCC---CCCHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCH
T ss_conf             0233334564---3210010131289716986314678888663001222222220156665665279736653100341


Q ss_pred             HHHHCCCEEEECCCCCCCCEEEEEEECCCCC-CHHHHHHHHHHHHCC
Q ss_conf             8851798799827777632349998369888-858999999999604
Q batch____       248 RFLDSGALIEKKVVAQTLFEPVWIGWNEQTA-GLASGWWRDEILANS  293 (309)
Q Consensus       248 ~~~~~~~L~~l~~~~~~~~~~~~l~~~~~~~-~~~~~~~i~~l~~~~  293 (309)
                      .....+.|+.++++++...+++|++|+++.. +|++++|++++.++|
T Consensus       158 ~~~~~~~l~~~~~~~~~~~~~~~lv~~~~~~~s~~~~~fi~~l~~~A  204 (205)
T c3n6uA_         158 RNAFKDQLCSIPLQDALPNPTIYVLRRHDLPVTPAAAGLIRWIQHHA  204 (205)
T ss_dssp             SSTTGGGEEECCCCSCCCCCEEEEEEETTSCCCHHHHHHHHHHHHHT
T ss_pred             HHHCCCCEEEEECCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf             24223978998477887305699996387998889999999999735