BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (636 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P44680 Probable ATP-dependent helicase HI0387 n=261 Tax... 800 0.0 UniRef50_C4LDA1 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=C4... 733 0.0 UniRef50_A1SX28 ATP-dependent helicase, DinG family protein n=8 ... 717 0.0 UniRef50_B5JSI7 Helicase c2 n=1 Tax=gamma proteobacterium HTCC50... 573 e-162 UniRef50_B8GRE0 Helicase c2 n=6 Tax=Chromatiales RepID=B8GRE0_THISH 562 e-158 UniRef50_A0KWC1 Helicase c2 n=22 Tax=Gammaproteobacteria RepID=A... 560 e-158 UniRef50_C4HUU2 DinG family ATP-dependent helicase YoaA n=2 Tax=... 543 e-153 UniRef50_C7RB18 Helicase c2 n=1 Tax=Kangiella koreensis DSM 1606... 543 e-153 UniRef50_C5V4E9 Helicase c2 n=3 Tax=Betaproteobacteria RepID=C5V... 530 e-149 UniRef50_D0KYH8 Helicase c2 n=1 Tax=Halothiobacillus neapolitanu... 521 e-146 UniRef50_A6GN94 Helicase c2 n=1 Tax=Limnobacter sp. MED105 RepID... 520 e-146 UniRef50_B9ZQY0 Helicase c2 n=1 Tax=Thioalkalivibrio sp. K90mix ... 513 e-144 UniRef50_Q0VQH3 Probable ATP-dependent helicase n=2 Tax=Alcanivo... 512 e-143 UniRef50_UPI0000E87EB6 Helicase c2:DEAD/DEAH box helicase, N-ter... 498 e-139 UniRef50_C0N252 Putative uncharacterized protein n=1 Tax=Methylo... 494 e-138 UniRef50_B2SXR3 Helicase c2 n=26 Tax=Burkholderiales RepID=B2SXR... 494 e-138 UniRef50_B2JIT4 Helicase c2 n=59 Tax=Betaproteobacteria RepID=B2... 493 e-138 UniRef50_Q5ZU85 ATP dependent DNA helicase (DEAD box family) Rad... 488 e-136 UniRef50_B4ST01 Helicase c2 n=23 Tax=Gammaproteobacteria RepID=B... 476 e-132 UniRef50_B5EML2 Helicase c2 n=2 Tax=Acidithiobacillus ferrooxida... 476 e-132 UniRef50_A9IIW5 Probable ATP-dependent helicase n=6 Tax=Proteoba... 470 e-131 UniRef50_Q31G59 Putative uncharacterized protein n=1 Tax=Thiomic... 453 e-125 UniRef50_C6NRY2 DinG family ATP-dependent helicase YoaA n=1 Tax=... 445 e-123 UniRef50_B1XY97 Helicase c2 n=2 Tax=Burkholderiales Genera incer... 441 e-122 UniRef50_C7I1U8 Helicase c2 n=1 Tax=Thiomonas intermedia K12 Rep... 436 e-120 UniRef50_A0L5B4 Helicase c2 n=1 Tax=Magnetococcus sp. MC-1 RepID... 435 e-120 UniRef50_C9YB00 Putative uncharacterized protein n=1 Tax=Curviba... 427 e-118 UniRef50_C8N856 ATP-dependent helicase n=1 Tax=Cardiobacterium h... 426 e-117 UniRef50_Q1IHL6 Helicase c2 n=3 Tax=Acidobacteria RepID=Q1IHL6_A... 413 e-113 UniRef50_A9BWB5 Helicase c2 n=2 Tax=Comamonadaceae RepID=A9BWB5_... 409 e-112 UniRef50_D0J804 Helicase c2 n=4 Tax=Comamonadaceae RepID=D0J804_... 406 e-111 UniRef50_A5EVG8 Helicase domain protein n=1 Tax=Dichelobacter no... 401 e-110 UniRef50_Q0F3T0 ATP-dependent helicase n=1 Tax=Mariprofundus fer... 397 e-109 UniRef50_Q1NJC5 Helicase c2 n=2 Tax=delta proteobacterium MLMS-1... 397 e-109 UniRef50_D0LRT5 Helicase c2 n=1 Tax=Haliangium ochraceum DSM 143... 395 e-108 UniRef50_Q6AMF2 Related to ATP-dependent helicase n=2 Tax=Proteo... 387 e-106 UniRef50_Q1CXN9 Putative ATP-dependent helicase n=1 Tax=Myxococc... 387 e-106 UniRef50_C8R1Z3 Helicase c2 n=1 Tax=Desulfurivibrio alkaliphilus... 383 e-104 UniRef50_A1W6Z0 Helicase c2 n=5 Tax=Comamonadaceae RepID=A1W6Z0_... 377 e-103 UniRef50_A0LLQ3 Helicase c2 n=1 Tax=Syntrophobacter fumaroxidans... 372 e-101 UniRef50_B6BV17 Helicase c2 n=1 Tax=beta proteobacterium KB13 Re... 368 e-100 UniRef50_A9GFB8 ATP-dependent helicase n=2 Tax=Myxococcales RepI... 362 2e-98 UniRef50_A7HIV0 Helicase c2 n=4 Tax=Anaeromyxobacter RepID=A7HIV... 362 3e-98 UniRef50_A5TWB3 ATP-dependent helicase n=14 Tax=Fusobacterium Re... 350 1e-94 UniRef50_B2A1E9 Helicase c2 n=1 Tax=Natranaerobius thermophilus ... 349 2e-94 UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Ther... 342 2e-92 UniRef50_A6C6H8 ATP-dependent helicase, DinG family protein n=1 ... 341 4e-92 UniRef50_C1ZB20 DNA helicase, Rad3 n=3 Tax=Planctomycetaceae Rep... 338 3e-91 UniRef50_D2QZI1 Helicase c2 n=2 Tax=Planctomycetaceae RepID=D2QZ... 329 2e-88 UniRef50_B4D6W3 Helicase c2 n=2 Tax=Verrucomicrobia RepID=B4D6W3... 326 1e-87 UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chlo... 323 1e-86 UniRef50_A6DIX1 ATP-dependent helicase, DinG family protein n=1 ... 318 3e-85 UniRef50_C3WBH3 ATP-dependent helicase DinG n=2 Tax=Fusobacteriu... 317 8e-85 UniRef50_B2URD7 Helicase c2 n=1 Tax=Akkermansia muciniphila ATCC... 316 2e-84 UniRef50_Q1PXS1 Similar to ATP-dependent DNA helicase (DNA-damag... 315 3e-84 UniRef50_D1AJB0 Helicase c2 n=5 Tax=Fusobacteriaceae RepID=D1AJB... 315 3e-84 UniRef50_A0YCJ4 Helicase c2 n=1 Tax=marine gamma proteobacterium... 311 5e-83 UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2... 310 1e-82 UniRef50_D1AXI2 Helicase c2 n=1 Tax=Streptobacillus moniliformis... 310 1e-82 UniRef50_D0MD62 Helicase c2 n=1 Tax=Rhodothermus marinus DSM 425... 308 3e-82 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 307 8e-82 UniRef50_B3DY63 Rad3-related DNA helicase n=1 Tax=Methylacidiphi... 307 8e-82 UniRef50_B9XI74 Helicase c2 n=1 Tax=bacterium Ellin514 RepID=B9X... 306 1e-81 UniRef50_B8CW80 Helicase c2 n=1 Tax=Halothermothrix orenii H 168... 306 2e-81 UniRef50_C8W6D5 Exonuclease RNase T and DNA polymerase III n=1 T... 305 4e-81 UniRef50_D1N0Q3 Helicase c2 n=1 Tax=Victivallis vadensis ATCC BA... 304 9e-81 UniRef50_D0LMW6 Helicase c2 n=3 Tax=Haliangium ochraceum DSM 143... 302 3e-80 UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotom... 301 7e-80 UniRef50_C1A7T8 Putative ATP-dependent DNA helicase n=1 Tax=Gemm... 299 3e-79 UniRef50_Q7NN01 Gll0614 protein n=1 Tax=Gloeobacter violaceus Re... 298 4e-79 UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helic... 297 1e-78 UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 296 2e-78 UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 296 2e-78 UniRef50_Q73L75 ATP-dependent helicase, DinG family n=3 Tax=Trep... 290 9e-77 UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI... 288 4e-76 UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1... 286 2e-75 UniRef50_B0S8U2 DNA helicase n=6 Tax=Leptospira RepID=B0S8U2_LEPBA 281 5e-74 UniRef50_Q0AXW2 Putative uncharacterized protein n=1 Tax=Syntrop... 278 5e-73 UniRef50_C0B304 Putative uncharacterized protein n=1 Tax=Proteus... 276 2e-72 UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4... 275 4e-72 UniRef50_C7QD23 Helicase c2 n=3 Tax=Actinomycetales RepID=C7QD23... 274 6e-72 UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca... 273 1e-71 UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2... 272 3e-71 UniRef50_A8LYP2 Helicase c2 n=13 Tax=Actinomycetales RepID=A8LYP... 270 9e-71 UniRef50_P64315 Probable ATP-dependent helicase dinG homolog n=1... 270 1e-70 UniRef50_B1ZV97 Helicase c2 n=2 Tax=Opitutaceae RepID=B1ZV97_OPITP 269 2e-70 UniRef50_B2S179 ATP-dependent helicase, DinG family n=4 Tax=Borr... 267 7e-70 UniRef50_A7BD43 Putative uncharacterized protein n=1 Tax=Actinom... 266 2e-69 UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase... 265 3e-69 UniRef50_D1C098 Helicase c2 n=10 Tax=Actinomycetales RepID=D1C09... 263 1e-68 UniRef50_C0W0F4 ATP-dependent DNA helicase n=1 Tax=Actinomyces c... 263 1e-68 UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep... 262 3e-68 UniRef50_C7NJ65 DNA helicase, Rad3 n=28 Tax=Actinomycetales RepI... 261 6e-68 UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-rel... 261 9e-68 UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus... 259 3e-67 UniRef50_C5VAL7 ATP-dependent helicase n=14 Tax=Corynebacterinea... 257 1e-66 UniRef50_D1YCN3 ATP-dependent helicase DinG n=3 Tax=Propionibact... 256 2e-66 UniRef50_Q47MW9 Helicase c2:DEAD/DEAH box helicase, N-terminal n... 250 1e-64 UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1... 249 2e-64 UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atop... 242 3e-62 UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, pu... 241 6e-62 UniRef50_C1SGW8 DNA helicase, Rad3 n=1 Tax=Denitrovibrio acetiph... 238 4e-61 UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 236 2e-60 UniRef50_C1TS05 DNA helicase, Rad3 n=1 Tax=Dethiosulfovibrio pep... 235 3e-60 UniRef50_A6VX61 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=A6... 234 1e-59 UniRef50_C9M767 Putative ATP-dependent helicase n=1 Tax=Jonquete... 231 6e-59 UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA poly... 231 7e-59 UniRef50_D1SEM0 Helicase c2 n=2 Tax=Micromonospora RepID=D1SEM0_... 225 3e-57 UniRef50_C8RVT0 ATP-dependent helicase DinG (Fragment) n=2 Tax=C... 224 9e-57 UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1... 221 9e-56 UniRef50_P29741 Probable ATP-dependent helicase dinG homolog n=5... 220 1e-55 UniRef50_A4A9L6 ATP-dependent helicase, DinG n=4 Tax=unclassifie... 220 1e-55 UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependen... 219 3e-55 UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collins... 218 4e-55 UniRef50_A1VJJ6 Helicase c2 n=2 Tax=Polaromonas naphthalenivoran... 217 1e-54 UniRef50_Q2SIT1 Rad3-related DNA helicase n=1 Tax=Hahella chejue... 216 2e-54 UniRef50_Q1QX31 Helicase c2 n=9 Tax=Gammaproteobacteria RepID=Q1... 213 3e-53 UniRef50_B2SSY1 ATP-dependent helicase n=13 Tax=Xanthomonadaceae... 211 6e-53 UniRef50_A1WTY2 Helicase c2 n=1 Tax=Halorhodospira halophila SL1... 209 2e-52 UniRef50_D1Y8P3 DNA polymerase III, epsilon subunit n=1 Tax=Pyra... 208 5e-52 UniRef50_B4RPD7 DinG n=35 Tax=Proteobacteria RepID=B4RPD7_NEIG2 206 2e-51 UniRef50_A5CX48 ATP-dependent DNA helicase DinG n=3 Tax=Gammapro... 205 4e-51 UniRef50_B8CRB2 Helicase c2 n=45 Tax=Gammaproteobacteria RepID=B... 204 8e-51 UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Sla... 204 1e-50 UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D09... 200 1e-49 UniRef50_P27296 Probable ATP-dependent helicase dinG n=174 Tax=E... 199 2e-49 UniRef50_C1MEF3 DNA helicase n=1 Tax=Citrobacter sp. 30_2 RepID=... 199 2e-49 UniRef50_Q8L2A4 DNA helicase n=1 Tax=Proteus vulgaris RepID=Q8L2... 197 1e-48 UniRef50_Q67KS2 ATP-dependent helicase n=1 Tax=Symbiobacterium t... 196 2e-48 UniRef50_Q1YS96 ATP-dependent helicase DinG n=1 Tax=gamma proteo... 196 3e-48 UniRef50_Q2BMS2 Helicase, putative n=1 Tax=Neptuniibacter caesar... 193 2e-47 UniRef50_UPI0001C37E7F helicase c2 n=1 Tax=Ruminococcus flavefac... 191 8e-47 UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax... 189 3e-46 UniRef50_Q39QU4 Helicase c2 n=11 Tax=Bacteria RepID=Q39QU4_GEOMG 189 3e-46 UniRef50_A6TUM0 Helicase c2 n=3 Tax=Clostridiales RepID=A6TUM0_A... 188 7e-46 UniRef50_Q6MEU9 Putative ATP-dependent DNA helicase dinG n=2 Tax... 182 3e-44 UniRef50_C6JKU1 ATP-dependent helicase n=2 Tax=Fusobacterium Rep... 178 5e-43 UniRef50_Q1K3T5 Helicase c2 n=1 Tax=Desulfuromonas acetoxidans D... 176 3e-42 UniRef50_Q2LUZ3 ATP-dependent helicase, dinG family n=1 Tax=Synt... 171 8e-41 UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class... 171 1e-40 UniRef50_A6LV05 Exonuclease, RNase T and DNA polymerase III n=6 ... 170 2e-40 UniRef50_A6NXQ7 Putative uncharacterized protein n=2 Tax=Bacteri... 168 5e-40 UniRef50_C6PPR9 Exonuclease RNase T and DNA polymerase III n=1 T... 165 6e-39 UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri... 163 2e-38 UniRef50_A1WP29 Helicase c2 n=2 Tax=cellular organisms RepID=A1W... 162 3e-38 UniRef50_C0QZ08 Helicase n=2 Tax=Brachyspira RepID=C0QZ08_BRAHW 162 4e-38 UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atop... 160 1e-37 UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit ... 159 3e-37 UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:Dna... 158 5e-37 UniRef50_D0L9M3 Helicase c2 n=6 Tax=Actinomycetales RepID=D0L9M3... 158 6e-37 UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus ... 157 2e-36 UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7... 157 2e-36 UniRef50_Q73F47 ATP-dependent helicase, DinG family, putative n=... 156 2e-36 UniRef50_D2MI55 Helicase c2 n=1 Tax=Candidatus Poribacteria sp. ... 155 4e-36 UniRef50_C0FSD6 Putative uncharacterized protein n=2 Tax=Rosebur... 155 5e-36 UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R... 154 7e-36 UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactoba... 154 7e-36 UniRef50_C2BW38 ATP-dependent helicase DinG n=3 Tax=Mobiluncus R... 152 3e-35 UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T... 151 6e-35 UniRef50_C5BWL9 Helicase c2 n=14 Tax=Actinomycetales RepID=C5BWL... 151 6e-35 UniRef50_P50831 Probable ATP-dependent helicase ypvA n=105 Tax=B... 150 1e-34 UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=5... 150 2e-34 UniRef50_UPI0001C355EC helicase c2 n=1 Tax=Clostridium hathewayi... 148 5e-34 UniRef50_D1ABA6 Helicase c2 n=4 Tax=Actinomycetales RepID=D1ABA6... 146 3e-33 UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=1... 146 3e-33 UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit ... 142 4e-32 UniRef50_A6BD56 Putative uncharacterized protein n=7 Tax=Clostri... 140 1e-31 UniRef50_Q1MXU1 ATP-dependent helicase DinG n=1 Tax=Bermanella m... 139 3e-31 UniRef50_A3EQ06 Probable ATP-dependent DNA helicase n=2 Tax=Lept... 138 8e-31 UniRef50_A0LUZ2 Helicase c2 n=1 Tax=Acidothermus cellulolyticus ... 138 8e-31 UniRef50_C0ABZ5 Helicase C2 n=2 Tax=Verrucomicrobia RepID=C0ABZ5... 137 1e-30 UniRef50_UPI0001699456 Helicase c2 n=1 Tax=Endoriftia persephone... 135 3e-30 UniRef50_A1U100 Helicase c2 n=3 Tax=Marinobacter RepID=A1U100_MARAV 135 6e-30 UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit ... 134 7e-30 UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, pu... 130 1e-28 UniRef50_A4BE15 ATP-dependent helicase, DinG family protein n=1 ... 130 2e-28 UniRef50_Q58352 Probable ATP-dependent helicase MJ0942 n=10 Tax=... 129 3e-28 UniRef50_C1D0X6 Putative ATP-dependent DNA helicase n=1 Tax=Dein... 129 5e-28 UniRef50_Q482M5 ATP-dependent helicase DinG n=3 Tax=Gammaproteob... 128 5e-28 UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit... 128 8e-28 UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Egge... 128 9e-28 UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit... 127 9e-28 UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collins... 126 2e-27 UniRef50_C0N9A8 Putative uncharacterized protein n=1 Tax=Methylo... 126 3e-27 UniRef50_Q21I38 Helicase c2 n=16 Tax=Gammaproteobacteria RepID=Q... 126 3e-27 UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ... 125 4e-27 UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, e... 124 9e-27 UniRef50_C5CG21 Helicase c2 n=1 Tax=Kosmotoga olearia TBF 19.5.1... 122 6e-26 UniRef50_Q0A9Y9 Helicase c2 n=2 Tax=Gammaproteobacteria RepID=Q0... 119 5e-25 UniRef50_C0XBA8 ATP-dependent helicase DinG n=1 Tax=Lactobacillu... 117 1e-24 UniRef50_UPI0001850E3B bifunctional ATP-dependent DNA helicase/D... 117 1e-24 UniRef50_UPI0001BC908D ATP-dependent DNA helicase DinG n=1 Tax=P... 117 2e-24 UniRef50_Q840H8 Putative uncharacterized protein (Fragment) n=2 ... 117 2e-24 UniRef50_A1WDD4 Helicase c2 n=11 Tax=Comamonadaceae RepID=A1WDD4... 117 2e-24 UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lact... 115 4e-24 UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus Re... 115 4e-24 UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_... 114 1e-23 UniRef50_B8HIV9 Helicase c2 n=1 Tax=Arthrobacter chlorophenolicu... 113 3e-23 UniRef50_C5SK23 Helicase c2 n=2 Tax=Caulobacteraceae RepID=C5SK2... 110 1e-22 UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit ... 110 1e-22 UniRef50_C8NF23 DnaQ family exonuclease/DinG family helicase n=1... 109 3e-22 UniRef50_Q1EM22 ATP-dependent helicase DinG n=1 Tax=uncultured T... 106 3e-21 UniRef50_B6IWJ8 DNA helicase, putative n=1 Tax=Rhodospirillum ce... 105 7e-21 UniRef50_UPI0001C41D99 Rad3-related DNA helicase n=1 Tax=Methano... 103 3e-20 UniRef50_Q2NCB3 DNA helicase n=10 Tax=Sphingomonadales RepID=Q2N... 102 4e-20 UniRef50_B4U7P2 Helicase c2 n=1 Tax=Hydrogenobaculum sp. Y04AAS1... 102 4e-20 UniRef50_C5U5Q1 Helicase domain protein n=1 Tax=Methanocaldococc... 100 1e-19 UniRef50_B5ZKV6 Helicase c2 n=11 Tax=Rhodospirillales RepID=B5ZK... 100 1e-19 UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1... 100 3e-19 UniRef50_A8URH3 ATP-dependent helicase (DinG family) protein n=2... 98 8e-19 UniRef50_A7HQ70 Helicase c2 n=7 Tax=Alphaproteobacteria RepID=A7... 95 7e-18 UniRef50_A0AE01 Putative DEAD/DEAH box helicase n=1 Tax=Streptom... 95 8e-18 UniRef50_Q0BQ29 ATP-dependent helicase, DinG family n=3 Tax=Rhod... 93 4e-17 UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, pu... 91 2e-16 UniRef50_A4VTT3 Rad3-related DNA helicase n=8 Tax=Streptococcus ... 88 1e-15 UniRef50_A7VIR7 Putative uncharacterized protein n=3 Tax=Clostri... 87 3e-15 UniRef50_C8X8L4 Helicase c2 n=1 Tax=Nakamurella multipartita DSM... 86 5e-15 UniRef50_C9XQW7 Putative exonuclease n=9 Tax=Clostridium RepID=C... 86 6e-15 UniRef50_B7AB83 ATP-dependent DNA helicase, RecQ family n=3 Tax=... 84 2e-14 UniRef50_D1PKE8 ATP-dependent helicase DinG n=3 Tax=Bacteria Rep... 82 6e-14 UniRef50_Q9Z9N9 Unknown (Fragment) n=1 Tax=Bacillus halodurans R... 82 6e-14 UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macroco... 82 7e-14 UniRef50_B5XKK7 DNA polymerase III, epsilon subunit/ATP-dependen... 81 1e-13 UniRef50_D2MHS9 Helicase c2 (Fragment) n=1 Tax=Candidatus Poriba... 81 1e-13 UniRef50_B6FUD5 Putative uncharacterized protein n=1 Tax=Clostri... 81 2e-13 UniRef50_B0S2X2 ATP dependent helicase n=2 Tax=Finegoldia magna ... 80 2e-13 UniRef50_UPI0001C41B43 ATP-dependent DNA helicase n=1 Tax=Methan... 77 2e-12 UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus... 76 4e-12 UniRef50_A8REN5 Putative uncharacterized protein n=1 Tax=Eubacte... 76 4e-12 UniRef50_B0G3G8 Putative uncharacterized protein n=16 Tax=Bacter... 75 6e-12 UniRef50_UPI000046DC90 ATP-dependent DNA helicase, truncated n=1... 75 8e-12 UniRef50_D0BJL1 DnaQ family exonuclease/DinG family helicase n=1... 74 2e-11 UniRef50_A4NVT8 ATP-dependent helicase n=2 Tax=Haemophilus influ... 74 2e-11 UniRef50_C5BQV4 Putative uncharacterized protein n=1 Tax=Teredin... 73 4e-11 UniRef50_Q2RPW4 Helicase c2 n=6 Tax=Alphaproteobacteria RepID=Q2... 72 4e-11 UniRef50_A1AQ39 DEAD_2 domain protein n=7 Tax=Desulfuromonadales... 72 6e-11 UniRef50_Q7NKM8 Glr1449 protein n=1 Tax=Gloeobacter violaceus Re... 72 9e-11 UniRef50_A7I7C4 DEAD_2 domain protein n=5 Tax=Methanomicrobiales... 72 9e-11 UniRef50_A0B9R4 Helicase c2 n=1 Tax=Methanosaeta thermophila PT ... 71 1e-10 UniRef50_A8MJA6 DEAD_2 domain protein n=11 Tax=Clostridia RepID=... 70 2e-10 UniRef50_Q8DJI3 Tlr1240 protein n=1 Tax=Thermosynechococcus elon... 70 2e-10 UniRef50_C6NY64 DinG family ATP-dependent helicase YoaA n=1 Tax=... 70 3e-10 UniRef50_C0D1I1 Putative uncharacterized protein n=1 Tax=Clostri... 70 3e-10 UniRef50_C7RHR2 DEAD_2 domain protein n=4 Tax=Anaerococcus RepID... 70 3e-10 UniRef50_Q5UF23 Predicted Rad3-related DNA helicases n=1 Tax=unc... 70 3e-10 UniRef50_D1VTJ3 DEAD family protein n=1 Tax=Peptoniphilus lacrim... 69 5e-10 UniRef50_Q5N3R1 Carboxyl-terminal protease n=2 Tax=Synechococcus... 69 5e-10 UniRef50_Q03DH3 Rad3-related DNA helicase n=2 Tax=Pediococcus Re... 69 7e-10 UniRef50_D1PKE7 Putative helicase c2 n=1 Tax=Subdoligranulum var... 68 8e-10 UniRef50_A9KRY0 DEAD_2 domain protein n=2 Tax=Clostridiales RepI... 68 9e-10 >UniRef50_P44680 Probable ATP-dependent helicase HI0387 n=261 Tax=Gammaproteobacteria RepID=Y387_HAEIN Length = 640 Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 383/631 (60%), Positives = 474/631 (75%), Gaps = 1/631 (0%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + F+ +G+L++ I GF+PR Q +MA AV +AI+ LV+EAGTGTGKT+AYLAPAL Sbjct: 7 IANIFSLNGELSQNIKGFRPRAEQLEMAYAVGKAIQNKSSLVIEAGTGTGKTFAYLAPAL 66 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 KK IISTGSK LQDQL++RDLP + KAL +TG +ALLKGR+NYLCLERL+Q G Sbjct: 67 VFGKKTIISTGSKNLQDQLFNRDLPAIKKALNFTGKIALLKGRANYLCLERLDQVIAQGV 126 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 +L+++ +R W+N T GD + C+ +AEDS P +TST ++CLG+DCP Y +C+ Sbjct: 127 LGDKSVLAELSKVRKWNNSTKTGDFTECIELAEDSPIIPQLTSTAESCLGTDCPNYSECY 186 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 V ARKKA++AD+VVVNHHLF ADM VKESGFGELIP A+V+IFDEAHQLPDIASQYFGQ Sbjct: 187 VASARKKALNADLVVVNHHLFFADMAVKESGFGELIPNAEVIIFDEAHQLPDIASQYFGQ 246 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE-PGYRGNLRELL 299 SL+SRQL DL KDI I YRTELKD QQL +D L + QDFRL LG RGN REL Sbjct: 247 SLTSRQLFDLCKDINIVYRTELKDMQQLGTTSDTLLKVVQDFRLLLGNGSNVRGNWRELY 306 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359 +++AF LL + ++ +V KL+LGRS LD+ FER + +LKRL E N GY Y Sbjct: 307 TQSAVKKAFELLQEKIDFLSEVIKLALGRSQTLDSIFERVESIKIQLKRLSETNIVGYCY 366 Query: 360 WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES 419 WYE R F L +TPL+VADKF + K +WIFTSATL V +HF RLGIE A Sbjct: 367 WYEGNGRQFGLHITPLTVADKFGAQLEAKEAAWIFTSATLEVGGTFNHFCQRLGIENATQ 426 Query: 420 LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 +L SPF+Y Q+LLCV R LP TNQ + L +L P+IEAN GRCF+LCTS++MMR Sbjct: 427 KILYSPFNYPEQSLLCVPRYLPNTNQMNTLNSLGEILLPVIEANKGRCFVLCTSYSMMRG 486 Query: 480 LAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDK 539 LAE FR L +LLQGETSKG+LL+QF+ +++LVATSSFWEGVDVRGD LSLVIIDK Sbjct: 487 LAEYFREKSHLSILLQGETSKGKLLEQFIKETHSVLVATSSFWEGVDVRGDALSLVIIDK 546 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LPFT+PD+PLLKAR+EDCRL+GGDPF+++Q+P+AVITLKQGVGRLIRD DRGV++ICDN Sbjct: 547 LPFTAPDEPLLKARIEDCRLQGGDPFNDIQIPEAVITLKQGVGRLIRDVTDRGVVIICDN 606 Query: 600 RLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 RLVMR YG TFL SLP + RTRD+ + ++FL Sbjct: 607 RLVMRNYGETFLKSLPNSSRTRDLNKVIQFL 637 >UniRef50_C4LDA1 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=C4LDA1_TOLAT Length = 672 Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/634 (57%), Positives = 459/634 (72%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 D FA +G LAKAIPGF PR+ Q MA AV++AIE L+VEAGTGTGKT+AYL PAL Sbjct: 18 NDYFAENGLLAKAIPGFAPRQAQVHMAEAVSKAIETAGRLLVEAGTGTGKTFAYLVPALD 77 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 + K+VIISTGSKALQDQLY RDLPT+ A++Y VA LKGRSNYLC RL Sbjct: 78 SGKRVIISTGSKALQDQLYERDLPTLLLAMQYGKPVAQLKGRSNYLCTYRLALLEQEMHF 137 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 L + +D+ +R + +TV GD++ + E + P VTSTNDNCLG +CP Y++CF+ Sbjct: 138 LAADVFADLPKVRQFKARTVSGDVADIPGLQEQAPILPFVTSTNDNCLGRECPDYENCFL 197 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS 241 VKAR+KA+DA VVV+NHHLF ADM VK++GFGEL+P+ADV IFDEAHQLPDIASQYFG+S Sbjct: 198 VKARRKALDAQVVVINHHLFFADMSVKDTGFGELLPDADVYIFDEAHQLPDIASQYFGES 257 Query: 242 LSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLAN 301 LSSRQL D+A ++ +AYR E KD QL K ADRL Q Q RL G RGNLR++L Sbjct: 258 LSSRQLSDVADELRLAYRLEAKDMAQLGKAADRLVQDCQAMRLAFGVDPSRGNLRDVLVQ 317 Query: 302 PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 PQ+QR L ++++ CYDV KL+LGR ++ FER + T + + I + G +YWY Sbjct: 318 PQMQRELQRLKESIKFCYDVCKLALGRGEQINNCFERLAGFLTTVDHVTAITEAGAAYWY 377 Query: 362 ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL 421 E T RHFTL +TPLS+A++F + + + SWIFTSATL+V ++ +F+ R+G+ A++ L Sbjct: 378 ETTKRHFTLNVTPLSIAERFAQEVMRVGCSWIFTSATLTVGEEFDYFSQRMGVGDADTCL 437 Query: 422 LPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 L SPFDY+ Q+LLCV RNLP T+ A QLA L P+IE G CF LCTS+ + +A Sbjct: 438 LDSPFDYAHQSLLCVPRNLPDTSIYQRATQLAERLLPVIEQVPGGCFFLCTSYNSVNQIA 497 Query: 482 EQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLP 541 + R + VL+QG+ +K ++L FV+ G+A+LVATSSFWEGVDVRG LS VIIDKLP Sbjct: 498 QVLRDKLDRTVLVQGDDNKQRILADFVADGHAVLVATSSFWEGVDVRGAALSCVIIDKLP 557 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 FTSPD+PLLKARMEDCR++GGDPF ++QLP+AVI LKQGVGRLIRD DRG+L++CD RL Sbjct: 558 FTSPDEPLLKARMEDCRMQGGDPFQQLQLPEAVIVLKQGVGRLIRDYQDRGILILCDPRL 617 Query: 602 VMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 V +PYGA FL SLPP PR RDI R F +P S Sbjct: 618 VNKPYGAAFLKSLPPIPRCRDITRLTEFWKLPVS 651 >UniRef50_A1SX28 ATP-dependent helicase, DinG family protein n=8 Tax=Gammaproteobacteria RepID=A1SX28_PSYIN Length = 662 Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust. Identities = 355/635 (55%), Positives = 450/635 (70%), Gaps = 13/635 (2%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---- 60 F+ G L+K +P F R+ Q +MA AVTQAI K Q LVVEA TGTGKT+AYLAPAL Sbjct: 28 FSASGALSKQLPFFISRDAQIEMADAVTQAITKKQNLVVEAETGTGKTFAYLAPALLTFD 87 Query: 61 -RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG 119 + +K+IISTGSKALQ+QL+ +DLP + A +TG+V +LKGRSNYLC ERL + L Sbjct: 88 KASSEKIIISTGSKALQEQLFLKDLPLLMAATNFTGSVTVLKGRSNYLCNERLARFMLET 147 Query: 120 GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 + ++I +++WS + GD++ +AED+ P +TS NDNCLG +CP + DC Sbjct: 148 KQREKALQIELIKIKNWSLTSKTGDLAEIKDLAEDALIIPSITSNNDNCLGRECPSFDDC 207 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 F+VKARKKAMD+D+VV+NHHLF AD+ VKE+GFGELIPEA V IFDEAHQLPDIAS YFG Sbjct: 208 FIVKARKKAMDSDLVVINHHLFFADLAVKETGFGELIPEAGVYIFDEAHQLPDIASLYFG 267 Query: 240 QSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQL----GEPGYRGNL 295 +SLSSRQL++LAK+I YRTEL++ +Q+ K AD+L SA DFR+ G +R Sbjct: 268 ESLSSRQLIELAKEIEFVYRTELREAKQMSKAADQLRLSALDFRMAFAIDKGTGSWRDKS 327 Query: 296 RELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQP 355 +E + + R ++D E+ + LG+S +LD FER T + K+L +N+ Sbjct: 328 KERVMQLHVDRILQVMDFLKEVILE----RLGKSDVLDHCFERLTQFTLLFKKLNSVNES 383 Query: 356 GYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE 415 G+SYW+ECT +HF+L +TPLSVA +F+ +K SWIFTSATLSV HFT LG++ Sbjct: 384 GFSYWFECTKQHFSLNITPLSVAQRFQAECEKKQASWIFTSATLSVKGKFDHFTELLGLQ 443 Query: 416 QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 +++ L L SPFDY++Q+L V R LP+ PG A +L L P+I A+ GRCF LCTSHA Sbjct: 444 ESQCLQLASPFDYAKQSLFVVPRLLPEPGTPGLADKLVEQLAPVIRASKGRCFFLCTSHA 503 Query: 476 MMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 MM LA FR T+T PVLLQGE SK LL +F++ GNALLVATSSFWEGVDVRG LS V Sbjct: 504 MMNQLAAGFRQTLTFPVLLQGEKSKQALLDEFINHGNALLVATSSFWEGVDVRGQVLSCV 563 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 IIDK+PFTSP++PLLKARMED +L+G DPF EVQLP AVIT KQGVGRLIR D+GVL+ Sbjct: 564 IIDKIPFTSPEEPLLKARMEDAQLKGKDPFAEVQLPQAVITFKQGVGRLIRAEKDKGVLI 623 Query: 596 ICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 +CD RLV R YG FL SLP PRTR + A+ FL Sbjct: 624 VCDTRLVTRKYGNLFLNSLPCMPRTRSLDNAIDFL 658 >UniRef50_B5JSI7 Helicase c2 n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSI7_9GAMM Length = 631 Score = 573 bits (1476), Expect = e-162, Method: Compositional matrix adjust. Identities = 295/639 (46%), Positives = 406/639 (63%), Gaps = 21/639 (3%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 +D +G LAK I G+ PR+ Q+QMA AV +AIE LVVEAGTG GKTYAYL PA+ Sbjct: 4 SDLLGAEGPLAKVIEGYAPRDAQQQMAEAVEKAIEDIDVLVVEAGTGVGKTYAYLIPAIL 63 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 + +KVIISTG++ LQDQLY RDLP + K L ALLKGRSNYLCL R+ + D Sbjct: 64 SGQKVIISTGTRTLQDQLYHRDLPMLLKTLGVPLKRALLKGRSNYLCLHRMGIADVHHRD 123 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 + + ++ WS +T+ GD++ + E++ P VTST DNCLG DC Y DC V Sbjct: 124 R--EQSEQLAEIKRWSRETIHGDMAEVTLLPENAPILPKVTSTADNCLGVDCEFYNDCHV 181 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS 241 VKAR++A +AD+VVVNHHLF+ADM +K+ GFGE++P A+ IFDEAHQLP++AS +FGQ+ Sbjct: 182 VKARREAQEADLVVVNHHLFMADMALKQDGFGEVLPTANAFIFDEAHQLPEVASLFFGQA 241 Query: 242 LSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLAN 301 + SRQLL+ KDI Y TE+ + L + RL S +DFRL LG R + LL+ Sbjct: 242 VGSRQLLEFVKDIRAVYHTEISEADSLIDLSSRLEMSVRDFRLSLGAKEQRQAWQPLLSQ 301 Query: 302 PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAA---------FERATLYRTRLKRLKEI 352 ++ F L A +S R+ L++ +R T + RL + Sbjct: 302 ADVRHRFADL---------AAAMSTLRAELVEWEEQGPGVENLLKRCTEFEQRLTLFDHL 352 Query: 353 NQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL 412 ++ Y YW E T F L +TPLSVA F+ M++ SW+FTSATL+V + HHFT L Sbjct: 353 DE-DYIYWLETTRLGFVLNMTPLSVAKTFRAHMSRYEASWVFTSATLAVGEQFHHFTQSL 411 Query: 413 GIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCT 472 G+ + +L L SPFDY+ +++C+ NLP+ + + +PI++A+ GR FML T Sbjct: 412 GLWEPRTLRLESPFDYANNSIICLPENLPEPSAFHFTDAVVDAAKPILQASRGRAFMLFT 471 Query: 473 SHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTL 532 S+ + AE+ ++ + P+ +QGE + QLL F +G+ +L+ TSSFWEGVD++G+ L Sbjct: 472 SYRALNHAAERLKSEVAFPLFVQGEAPRTQLLDDFRESGDGVLLGTSSFWEGVDIKGEAL 531 Query: 533 SLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRG 592 S VIIDKLPF +P+DP+L+ARM+ + +G +PF + QLP+AVI LKQGVGRLIRD DRG Sbjct: 532 SCVIIDKLPFAAPNDPVLQARMDAMKEQGQNPFMDYQLPNAVIALKQGVGRLIRDVHDRG 591 Query: 593 VLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 V+VICD RL + YG F SLPP RTR ++ +F A Sbjct: 592 VVVICDVRLKTKFYGKRFTNSLPPMKRTRKLSDIQQFFA 630 >UniRef50_B8GRE0 Helicase c2 n=6 Tax=Chromatiales RepID=B8GRE0_THISH Length = 651 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 303/631 (48%), Positives = 392/631 (62%), Gaps = 7/631 (1%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 PDG LA+ + F+PR Q+QMA AV +A+E Q LVVEAGTG GKT+ YL P L + Sbjct: 9 LGPDGPLAETLTNFRPRAAQQQMAAAVERALEARQALVVEAGTGVGKTFGYLVPVLMDGR 68 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTG-----NVALLKGRSNYLCLERLEQQALAG 119 + I+STG+K LQDQL+ +DLP V AL G VALLKGRSNYLC RL+ A Sbjct: 69 RTILSTGTKNLQDQLFQKDLPFVRDALVGAGLGRVPRVALLKGRSNYLCRHRLDL-ARED 127 Query: 120 GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 G L ++ + W ++T GDI + EDS WP VTST DNCLG DCP Y+DC Sbjct: 128 GRLGAAQTDQLLRVVRWVSRTTRGDIGELSGIPEDSPLWPQVTSTPDNCLGQDCPEYEDC 187 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 FVV+AR++A +AD+VV+NHHL +AD+ +KE GFGE++P AD + DEAHQLPD+AS +FG Sbjct: 188 FVVRARREAQEADLVVINHHLLMADLTLKEEGFGEILPSADAFVLDEAHQLPDVASAFFG 247 Query: 240 QSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELL 299 +S+ SRQLLDLA+D E D L+ AD L+ + R +LG R Sbjct: 248 RSVGSRQLLDLARDAVAEQLREASDMGDLRDAADALSMAVAALRSELGATSGRSPWTRHE 307 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359 + +I A L LE + R L+ RA R RL + +P Sbjct: 308 QDARITGAMDSLVARLETLVMWLDTAADRGKGLEQCARRANTLRARLLAFMK-PEPDTVR 366 Query: 360 WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES 419 W E +R F L TPL+VA++F E M P +WIF SATLSV HFT RLG+EQAE+ Sbjct: 367 WVETFTRAFALHATPLNVAERFGERMRAYPSAWIFASATLSVGGRFEHFTGRLGLEQAET 426 Query: 420 LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 L+L SPFDYSR A L + N+PQ N P + P+IEAN G FML TSH +R+ Sbjct: 427 LMLDSPFDYSRNARLYLPANMPQPNAPNHTAAVVEAALPVIEANPGGTFMLFTSHRALRE 486 Query: 480 LAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDK 539 A+ + +L+QG + +LL +F +AG+A+L+ SFWEGVDVRG LS VIIDK Sbjct: 487 AAQLLEGRLERELLVQGTAPRDELLARFRAAGDAVLLGAHSFWEGVDVRGRALSCVIIDK 546 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LPF +PDDPLL+AR++ R GG+PF + QLP AV++LKQGVGRLIRD DRGVL++CD Sbjct: 547 LPFAAPDDPLLEARLQAIRDAGGNPFMDYQLPQAVLSLKQGVGRLIRDVTDRGVLMLCDP 606 Query: 600 RLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 R+ + YG F++SLPP PR ++A FL Sbjct: 607 RIRTKAYGRLFISSLPPIPRLDNLAEVASFL 637 >UniRef50_A0KWC1 Helicase c2 n=22 Tax=Gammaproteobacteria RepID=A0KWC1_SHESA Length = 674 Score = 560 bits (1444), Expect = e-158, Method: Compositional matrix adjust. Identities = 301/639 (47%), Positives = 395/639 (61%), Gaps = 27/639 (4%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 FA DG LAK I GF R+ Q +MA +++AI ++EAGTG GKT+AYL PA+ + K Sbjct: 46 FASDGVLAKHIQGFSARQSQVEMAQIISEAIASKGNALIEAGTGVGKTFAYLIPAILSGK 105 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 +VI+STGSK LQ+QL+ +DLP ++ L +ALLKGR+NYLC RL++Q + Sbjct: 106 QVIVSTGSKNLQEQLFLKDLPALTSMLGIAPKLALLKGRNNYLCQHRLDKQMQEASHIEA 165 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 ++L D++ + W+ + DGDI SVAE+S A PLV ST + CLG C Y CF KA Sbjct: 166 RLLDDLLKINQWAGMSKDGDIGGLTSVAENSPALPLVVSTKETCLGQRCEFYDACFTRKA 225 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 R +AMDA ++VVNHHLF AD V+K++GF EL+P+ DV+IFDEAH LPDI YFGQ SS Sbjct: 226 RGRAMDAKIIVVNHHLFFADSVLKDTGFAELLPDPDVVIFDEAHLLPDICVSYFGQQSSS 285 Query: 245 RQLLDLAKDITIAYRTELKDTQQL----QKCADRL--------AQSAQDFRLQLGEPGYR 292 R + D + + Y+TEL DT Q+ Q+C +L + D+RLQLG Sbjct: 286 RTIDDYLQKLLQIYQTELSDTGQIAQFCQRCLTKLSDWHNALFSSGESDWRLQLGNKSIA 345 Query: 293 GNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEI 352 +LLA + LL + +GRS LLD + T +L + Sbjct: 346 LASWDLLAELTALQKLLL-------------VHVGRSELLDDIAVKLTELNHKLNQFFNC 392 Query: 353 NQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL 412 + P +Y E SR L ++P+++A + ++L SWIFTSATL VN L HF L Sbjct: 393 DNPQAAYSVEFGSRFVMLRMSPINIARECQQLFVANT-SWIFTSATLQVNRSLDHFAQEL 451 Query: 413 GIEQAESLLLPSPFDYSRQALLCVLRNLPQ-TNQPGSARQLAAMLRPIIEANNGRCFMLC 471 GI A++ +L SPFDY RQAL CV R L TNQ + +QL + IEA GR F+L Sbjct: 452 GISDAKAHILDSPFDYPRQALFCVPRQLGNVTNQQQALKQLVDVCVKAIEAAQGRTFILF 511 Query: 472 TSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDT 531 TSH M+ A R P+L+QG+ K LL +F GNA+L+ TSSFWEGVDVRG Sbjct: 512 TSHKMLEQTALALRTRTQYPLLVQGQAGKQSLLTKFRQLGNAVLLGTSSFWEGVDVRGKL 571 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 LS VIIDKLPF SPD+PL +AR ++ +GGDPF +V LP A+I LKQGVGRLIRD D Sbjct: 572 LSCVIIDKLPFVSPDEPLYRARADNISRQGGDPFTQVSLPQAIIALKQGVGRLIRDEKDC 631 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 GVL++CDNR+V R YG FL SLPP RTRD+ +A++FL Sbjct: 632 GVLILCDNRIVNRAYGQAFLNSLPPMSRTRDLDQALQFL 670 >UniRef50_C4HUU2 DinG family ATP-dependent helicase YoaA n=2 Tax=Yersinia pestis RepID=C4HUU2_YERPE Length = 464 Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust. Identities = 273/347 (78%), Positives = 302/347 (87%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 M DDFA DG LA+AI GF PRE QRQMA A+++AI+ Q LVVEAGTGTGKT+AYLAPAL Sbjct: 1 MIDDFATDGALAQAIKGFNPRESQRQMAAAISEAIDAKQQLVVEAGTGTGKTFAYLAPAL 60 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 RA KVIISTGSKALQDQLYSRDLP + ALKY G +ALLKGRSNYLCLERLEQQ+LAGG Sbjct: 61 RADCKVIISTGSKALQDQLYSRDLPMMVTALKYKGKLALLKGRSNYLCLERLEQQSLAGG 120 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 DL + L D++ LR WS +TVDGDISTC VAEDS WPLVTSTNDNCLGSDCP+YKDCF Sbjct: 121 DLASETLVDLVRLRGWSAETVDGDISTCGQVAEDSFVWPLVTSTNDNCLGSDCPLYKDCF 180 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 VVKAR++AMDADVVVVNHHLFLADMVVKESGF ELIP ADVMIFDEAHQ+PDIASQYFGQ Sbjct: 181 VVKARRRAMDADVVVVNHHLFLADMVVKESGFAELIPTADVMIFDEAHQIPDIASQYFGQ 240 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 L+SRQL+DLAKDI IAYRTE++D+ QLQK ADRL QS QDFRL LG+PGYRGNLR+++ Sbjct: 241 QLTSRQLMDLAKDIIIAYRTEVRDSAQLQKSADRLTQSTQDFRLVLGDPGYRGNLRDVME 300 Query: 301 NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLK 347 P +QRA LLLDD LELCYDV KLSLGRSA+LDAA ERAT+YR RLK Sbjct: 301 QPTVQRALLLLDDALELCYDVMKLSLGRSAMLDAALERATVYRNRLK 347 Score = 214 bits (546), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 100/112 (89%), Positives = 106/112 (94%) Query: 519 SSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLK 578 SSFWEGVDVRGD LS VIIDKLPFTSPDDPLLKAR+EDCRLRGGDPF++VQLPDAVITLK Sbjct: 349 SSFWEGVDVRGDALSCVIIDKLPFTSPDDPLLKARIEDCRLRGGDPFNDVQLPDAVITLK 408 Query: 579 QGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 QGVGRLIRD DDRGVLVICDNRLVMRPYGA FL SLPPAPRTRD+A+A+ FL Sbjct: 409 QGVGRLIRDIDDRGVLVICDNRLVMRPYGAMFLNSLPPAPRTRDLAKAIAFL 460 >UniRef50_C7RB18 Helicase c2 n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RB18_KANKD Length = 653 Score = 543 bits (1400), Expect = e-153, Method: Compositional matrix adjust. Identities = 287/639 (44%), Positives = 400/639 (62%), Gaps = 15/639 (2%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA-- 62 F+ DG LA GF R Q QMA ++ AI++ + +EAGTGTGKT+AYL PAL++ Sbjct: 11 FSADGLLADYFEGFVRRSEQEQMAQSIESAIKEEASICIEAGTGTGKTFAYLVPALKSWY 70 Query: 63 --KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 K+I+STG+K LQDQLY RDLP + KAL + +ALLKGR+NYLC RL QQ+L G Sbjct: 71 EQDSKIIVSTGTKNLQDQLYFRDLPDICKALSISPKIALLKGRNNYLCQYRL-QQSLESG 129 Query: 121 DLPVQILSDVI-LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 + + D + + WS +T GD++ C +A++ W VTSTN+NCLG++CP Y +C Sbjct: 130 RFQSRSMVDTLSRVNEWSVKTTSGDLTQCTDLADNDPLWSYVTSTNENCLGAECPDYAEC 189 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 FV KAR++A+ ADVVVVNHHL LADMV+KE GFGEL+P+AD+++ DE HQL DIA ++G Sbjct: 190 FVAKARQRAVTADVVVVNHHLLLADMVLKEDGFGELLPDADIVVVDEGHQLADIAHSFYG 249 Query: 240 QSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELL 299 + L+SRQL+++ +D + T KD +QL R+ + + RL LGE G + N ++++ Sbjct: 250 RRLTSRQLMEICRDTELEALTNAKDDRQLSVAVRRVEGAVNEIRLSLGESGQKKNWQQIV 309 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359 NPQ ++ L L + + RS LD+ +RA L + +Q + Sbjct: 310 -NPQRKQLLAELKKELGALHSRLERHASRSKGLDSCHKRAEECLHTLAFFSDKDQELTAV 368 Query: 360 -WYECTSRHFTLALTPLSVADKF-KELMAQKPGSWIFTSATLSV-----NDDLHHFTSRL 412 W E + F + TPL V+ F + Q SW+FTSAT++ D HF RL Sbjct: 369 RWVETYRQGFAMMETPLDVSKAFAQSCREQSTRSWVFTSATITQASSKGTSDFKHFKERL 428 Query: 413 GIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCT 472 G+++A L LPSPFDY+ QA+L + R L + PI+EAN G F+L T Sbjct: 429 GLDEARELELPSPFDYASQAILHIPRGLADPRSKDFINNWQQAVLPIVEANPGGTFVLFT 488 Query: 473 SHAMMRDLAEQFR-ATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDT 531 S++ M + E ++ + VL+QGE K QL++ F GNA+L+ATSSFWEGVDV+G Sbjct: 489 SYSAMHQVQELWKDKLLDKTVLMQGEKPKNQLIEDFREEGNAVLLATSSFWEGVDVKGLA 548 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 LS VIIDKLPF +PD+PL++A+++ R G +PF ++Q+P+A+I LKQG GRLIRD DR Sbjct: 549 LSCVIIDKLPFAAPDEPLIEAKIQAMRKSGKNPFFDLQIPEAIIALKQGAGRLIRDQKDR 608 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 GVLV+CD RL+ YG FL SLPP RTR+ + FL Sbjct: 609 GVLVLCDPRLIANAYGKRFLRSLPPMRRTREQKTVIEFL 647 >UniRef50_C5V4E9 Helicase c2 n=3 Tax=Betaproteobacteria RepID=C5V4E9_9PROT Length = 648 Score = 530 bits (1365), Expect = e-149, Method: Compositional matrix adjust. Identities = 289/640 (45%), Positives = 388/640 (60%), Gaps = 16/640 (2%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 F+ LA + F+PRE QR+MA+AV AI+ LV EAGTGTGKT+AYL PAL Sbjct: 9 FSEQSPLATEVSSFRPREQQREMALAVADAIKNNAILVAEAGTGTGKTFAYLVPALLGGG 68 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 KVIISTG+K LQDQL+ +DLP V ALK ++ALLKGR+NY+C LE+ A G Sbjct: 69 KVIISTGTKNLQDQLFQKDLPMVRDALKAPVSIALLKGRANYICHYHLERTAHDGRFATR 128 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + + + ++ ++ T GD S V E++ W VTST DNCLG +CP +K+CFV+ A Sbjct: 129 EDIKHLGKIKKYAKITSTGDKSGVADVPENAPIWLQVTSTRDNCLGQECPNHKECFVLHA 188 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 R +AM AD+VVVNHHLF AD+++K+ G EL+P + +IFDEAHQLP+ AS +FG++LS+ Sbjct: 189 RTEAMKADIVVVNHHLFFADVMLKDDGVAELLPACNTVIFDEAHQLPETASLFFGENLST 248 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGY-----RGNLRELL 299 QLLDLA+D I T KD L K D L ++A+D RL + G G+ ++ Sbjct: 249 TQLLDLAQDSRIEALTSAKDFAPLPKACDELDKAARDLRLVFKKEGRMPAIATGSFKDF- 307 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359 PQ++ L + L+ D+ + RS L+ ++RA + LK ++ Sbjct: 308 -APQLKN----LSEKLKQINDMLESQAARSEGLENCWQRAQAFSLLLKNWQDDKADDKVR 362 Query: 360 WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES 419 W E L TPLS+A+ F++ + +WIFTSATL+V D H+ +G+ +A++ Sbjct: 363 WLEVYHHSLQLNATPLSIAEIFEKQIGSTARAWIFTSATLAVKQDFSHYQGEMGLLKAKT 422 Query: 420 LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 SPFDY +QALL V LP+ N G + P+IEA+ GR F+L TS M+ Sbjct: 423 ACWDSPFDYEKQALLYVPSGLPEPNSEGYTEAVIQAALPMIEASRGRAFLLFTSLRAMQR 482 Query: 480 LAEQFRATMTL-----PVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSL 534 E A L P+LLQGE S+ +LL +F GNA+L+ + SFWEGVDVRG+ LSL Sbjct: 483 AHEILTAEFDLRGWSYPLLLQGEGSRNELLGRFREHGNAVLLGSQSFWEGVDVRGEALSL 542 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 VIIDKLPF PDDP+L AR+ +G + F E QLP +ITLKQG GRLIRD +DRGVL Sbjct: 543 VIIDKLPFAPPDDPVLAARIAQISKQGRNAFMEYQLPRTIITLKQGAGRLIRDENDRGVL 602 Query: 595 VICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPS 634 +ICD RL+ + YG SLPP RTR AV F S Sbjct: 603 MICDPRLITKQYGKRIWQSLPPMKRTRVETEAVAFFTAQS 642 >UniRef50_D0KYH8 Helicase c2 n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYH8_HALNC Length = 668 Score = 521 bits (1343), Expect = e-146, Method: Compositional matrix adjust. Identities = 272/628 (43%), Positives = 382/628 (60%), Gaps = 7/628 (1%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + D F G LA A G++PR Q QMA + AI + +V+EAGTG GKT+ YLAP L Sbjct: 21 LQDVFGESGVLAAAFSGYQPRAGQLQMAEIIRDAITDSRTVVIEAGTGVGKTFGYLAPIL 80 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 A +K I+STG+K LQDQ++SRDLP + + + T ALLKGRSNYLCL RLE+ G Sbjct: 81 LAGRKAIVSTGTKHLQDQIFSRDLPQIKQLMGSTTRTALLKGRSNYLCLHRLERAMTEGR 140 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 ++ + ++ WS +T DGDI+ C +V+E+ WPLVTSTN+NCLG +CP++ +CF Sbjct: 141 LKSPDWVTALHTIKGWSTRTRDGDIARCDAVSEEHGIWPLVTSTNENCLGKECPVFDECF 200 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 VVKAR+ A +AD+VV+NHHLF AD+ +++SGF +L+PEADV++ DEAHQLP+IAS +FG Sbjct: 201 VVKAREAAHEADLVVINHHLFCADIAIRQSGFAQLLPEADVVVLDEAHQLPEIASLFFGS 260 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGY-RGNLRELL 299 +LSS Q++DL +DI + E D L + + L L R +EL Sbjct: 261 ALSSGQMIDLLRDIVREQQAEAVDMSDLLGVVHQFELAIDPCVLALKNARTDRIAWQELR 320 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYR---TRLKRLKEINQPG 356 + IQ AF L+ L +L+ R L + ERA R + +R +EI Sbjct: 321 EDKTIQAAFDTLETRLADLTAALELAAPRGKGLASCHERAIQMRQSLSHFRRSEEITT-- 378 Query: 357 YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ 416 W E + FTL +TP+ F +++ +P +W+F SATL+ D HFT RL + Sbjct: 379 EVRWLERREKSFTLNITPMDAGQTFSDVVESQPRAWVFASATLAAGKDFSHFTRRLNLNL 438 Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQ-TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 A PSPFDY QA++ + N P P ++ + P+++A+ GR F+L TSH Sbjct: 439 ALCQQTPSPFDYPNQAIMYLPPNPPDPKTDPDYTLKILRAVFPVLKASGGRAFLLFTSHR 498 Query: 476 MMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 ++ A+ + P+ +QG +K LL+QF +GN +L+ T SFWEGVDVRG+ LS+V Sbjct: 499 ELKKAADILEGKLPFPLFVQGTQAKAALLEQFRQSGNGVLLGTQSFWEGVDVRGEALSVV 558 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 +ID++PF SPDDP+ +AR + G PF + LP+A+IT KQGVGRLIRD DRGVLV Sbjct: 559 MIDRIPFASPDDPVRRAREAQIKESGHSPFAAMALPEAIITFKQGVGRLIRDVTDRGVLV 618 Query: 596 ICDNRLVMRPYGATFLASLPPAPRTRDI 623 +CD RL +G L +LPP R+ I Sbjct: 619 LCDPRLQRTGFGRQILDALPPMRRSHSI 646 >UniRef50_A6GN94 Helicase c2 n=1 Tax=Limnobacter sp. MED105 RepID=A6GN94_9BURK Length = 654 Score = 520 bits (1340), Expect = e-146, Method: Compositional matrix adjust. Identities = 281/650 (43%), Positives = 389/650 (59%), Gaps = 29/650 (4%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + FAP G LA+ +PGF RE Q +MA AV AIE LVVEAGTGTGKT+AY+ PAL Sbjct: 8 LNEAFAPGGALARRLPGFSARESQIEMAQAVGNAIETQSALVVEAGTGTGKTFAYVVPAL 67 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + ++V++ST +K LQDQL+++DLP V +AL NVALLKGR NY+C LE+ AL Sbjct: 68 LSGRRVLLSTATKTLQDQLFNKDLPLVREALGVPVNVALLKGRQNYVCHFHLER-ALKEA 126 Query: 121 DLPVQILSDVIL-LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 LP D + ++ ++ +T GD + C V EDS W VTS DNCLG +CP +C Sbjct: 127 RLPSPREVDHLQKVKIFAGRTQSGDRADCAGVPEDSAVWSWVTSNKDNCLGGECPNASEC 186 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 FV KAR+ A+DA+VVVVNHHLFLAD+ +KE G EL+P DV++FDEAHQLPDIA+ G Sbjct: 187 FVNKARRDALDAEVVVVNHHLFLADLALKEEGIAELLPACDVIVFDEAHQLPDIATSLLG 246 Query: 240 QSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELL 299 Q++S+ Q + +D+ I RT D + + ++ R +G E+ Sbjct: 247 QAISTAQCQEFLRDVLIEGRTSSADAGDWDSVLRPMELALKEIRRIVGT--------EID 298 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEIN---QPG 356 + FL L+ +C D G ++ R + + R E+ Q Sbjct: 299 SARFTHAQFLALNGVAAVCADFENRLEGLIEMISPLSVRNESWVKLMGRASELCLRWQDW 358 Query: 357 YS-----------YWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDL 405 +S W ++ +PL V++ F +L A++P +W+FTSATLS+ + L Sbjct: 359 FSPATAQADEQSVRWVSVSTHVVQFCDSPLDVSNAFAKLYAEQPKAWVFTSATLSIKESL 418 Query: 406 HHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNG 465 HFT ++G+++ + LLLPSPFDY QALLCV NLP N+P +++L + P++ A+ G Sbjct: 419 QHFTLQVGLDECQQLLLPSPFDYESQALLCVPDNLPFPNEPQFSKKLCDAVWPLLHASEG 478 Query: 466 RCFMLCTSHAMMRDLAEQFRA-----TMTLPVLLQGETSKGQLLQQFVSAGNALLVATSS 520 F LCTSH ++ + E R + +L+QGE S+ +LL QF N +LV +S Sbjct: 479 GVFFLCTSHRAVKQVGEYLRERIEKDELDWSLLVQGEASRAELLDQFRVLNNPVLVGAAS 538 Query: 521 FWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQG 580 FWEGVD+RGD L LVIIDKLPF PDDP+ +A+ E + RGG+ F ++ LPDA I LKQG Sbjct: 539 FWEGVDIRGDGLRLVIIDKLPFAPPDDPVFQAKSELIKNRGGNAFQDLSLPDAAIALKQG 598 Query: 581 VGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 GRLIRD D GVL+I D RLV + YG SLPP RTR++ A+ F+ Sbjct: 599 AGRLIRDETDWGVLLIGDRRLVEKGYGKLLWRSLPPFKRTRELKVAIEFM 648 >UniRef50_B9ZQY0 Helicase c2 n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQY0_9GAMM Length = 664 Score = 513 bits (1322), Expect = e-144, Method: Compositional matrix adjust. Identities = 298/648 (45%), Positives = 387/648 (59%), Gaps = 24/648 (3%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKG-QPLVVEAGTGTGKTYAYLAPALRAK 63 +P G LA+A+ GF+PREPQ++MAVAV A+ + L+VEA TG GKT+AYL PAL+A+ Sbjct: 21 LSPGGDLAEALHGFRPREPQQRMAVAVESALGQAPTALLVEAATGVGKTFAYLVPALQAR 80 Query: 64 KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE-QQALAGGD- 121 +K +ISTG+K LQDQL+ RDLPTV +AL Y ALLKGR+NYLC RLE A AGG Sbjct: 81 RKALISTGTKTLQDQLFERDLPTVCEALGYRPRTALLKGRANYLCHYRLELAAAEAGGQT 140 Query: 122 --------LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDC 173 +PV + LR ++ GD+ +AEDS WP VTST DNCLG +C Sbjct: 141 QRSAQRERMPV-----IEALRQFARTHPTGDLGQAGILAEDSPLWPQVTSTVDNCLGGEC 195 Query: 174 PMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDI 233 P Y DCFVV+ARK+A DAD+VVVNHHL LADM +KE GFGEL+PE D +I DEAHQLP+I Sbjct: 196 PQYNDCFVVQARKRAQDADIVVVNHHLLLADMALKEEGFGELLPEVDAVIVDEAHQLPEI 255 Query: 234 ASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDF--RLQLGEPGY 291 A +FG S+ SR L DLA+D+ + +++ A L + Q EP Sbjct: 256 AGAFFGVSVGSRALRDLARDVRREQEQAAPEMVMIREAAVELETVVKKLLEATQGMEP-- 313 Query: 292 RGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKE 351 R + Q+ + LD+ L D + R L+ R L R RL+ +E Sbjct: 314 RAAWDVVNEKGQVDPSLEELDEALRALSDALAPATERGPGLEQVQGRVLLMRERLQGWRE 373 Query: 352 INQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSR 411 + P W E ++ L TPL A + A +P +W+FTSATL+V +D H + R Sbjct: 374 -DTPDTVAWVERFAQSLILHRTPLDAARPLAQRRAARPAAWVFTSATLAVGEDFTHASRR 432 Query: 412 LGIE-QAESLLLPSPFDYSRQALLCVLRN-LPQTNQPGSARQLAAMLRPIIEANNGRCFM 469 LG+ L SPFD++RQA L + LP N P R A P++ N G F Sbjct: 433 LGLPVDVAQQRLESPFDFARQACLVHPQPPLPNPNSPDYTRACVAWAWPLLRDNPGGGFF 492 Query: 470 LCTSHAMMRDLAEQFRATMT-LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 L TSH +++ A RA + +L+QGE + LL +F +GNA L+ SFWEGVD+R Sbjct: 493 LFTSHRALQEAAALLRAELPDRELLVQGEQPRNDLLARFRESGNAWLLGAHSFWEGVDIR 552 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 G+ LS+VIID+LPF +P+DP+L+AR + G PF E LP AV+ LKQG GRLIRDA Sbjct: 553 GEALSVVIIDRLPFAAPNDPVLQARAQALEAEGRSPFMEFSLPQAVLALKQGAGRLIRDA 612 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR 636 DD G+L ICD RL +PYG FLASLPP RTRD A++FLA R Sbjct: 613 DDAGILAICDPRLTGKPYGRRFLASLPPFYRTRDPIAALQFLATARER 660 >UniRef50_Q0VQH3 Probable ATP-dependent helicase n=2 Tax=Alcanivorax RepID=Q0VQH3_ALCBS Length = 668 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 279/626 (44%), Positives = 372/626 (59%), Gaps = 9/626 (1%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIIS 69 + A +PG++PREPQ +MA AV I G L+VEA TGTGKT AYL PAL ++ ++S Sbjct: 32 RFAPLLPGYQPREPQLEMADAVEDVIGSGATLLVEAETGTGKTLAYLVPALLSEGPTLVS 91 Query: 70 TGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSD 129 TG+K+LQDQL+ +DLP V KAL VALLKGR+NYLC RLE L + + Sbjct: 92 TGTKSLQDQLFFKDLPMVKKALNLPRKVALLKGRANYLCPYRLELHQEDARFLTRETVGQ 151 Query: 130 VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAM 189 + ++ W+ +T GDI+ + ED+ WP VTST DNCLG++CP Y +C ++KARK+A Sbjct: 152 MQIVSHWAARTRTGDIAELQQIPEDAPVWPWVTSTADNCLGTECPRYNECPLMKARKEAQ 211 Query: 190 DADVVVVNHHLFLADMVVKESGFG-ELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL 248 +AD+VVVNHHLF AD ++ +G EL+P A+ +IFDEAHQLP+IA+ +F +LS+RQ+ Sbjct: 212 EADLVVVNHHLFFADAALRGNGAASELLPTANTVIFDEAHQLPEIAAAFFADTLSTRQIQ 271 Query: 249 DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF 308 +L +D D +L + + +S+ D RL LG+ R E+ N + A Sbjct: 272 ELGRDSLSEAGHTAADLAELNRLVAAVDKSSMDLRLSLGDGERREPWTEVAENKAVIEAG 331 Query: 309 LLLDDTLE----LCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECT 364 L L+ +AK S G +DA RA+ L + QP YW+E Sbjct: 332 EALLQALQELDAFLGPLAKASRG----MDACSRRASEQVDCLAAYLKGGQPNRVYWFETF 387 Query: 365 SRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPS 424 R L TPLSVA + + + P SWI TSATLSV H RLG++ A +L L S Sbjct: 388 KRSVVLHSTPLSVAAQLRAQRERNPCSWILTSATLSVGGRFEHIQHRLGLDSARTLRLES 447 Query: 425 PFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF 484 PFD+ RQA+ LP N QL A + P+I A GR F L TSH +R+ A Sbjct: 448 PFDFKRQAVFYAPEGLPAPNDSEYTAQLTAAMVPVINAARGRTFFLFTSHRALREAAAIL 507 Query: 485 RATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTS 544 R + P+L+QGE + +LL F GNA+L+ TSSFWEG+DVRG+ LS VIIDKLPF S Sbjct: 508 RQKLDYPLLVQGEAGRRELLDAFREKGNAVLLGTSSFWEGIDVRGEALSCVIIDKLPFGS 567 Query: 545 PDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMR 604 P DP+ AR+E GG+ F + QLP AV+ L+QG GRLIRD D G+LV+ D RL+ R Sbjct: 568 PGDPVAAARIEHINRNGGNAFRDYQLPQAVLALRQGAGRLIRDPKDTGLLVVADPRLLTR 627 Query: 605 PYGATFLASLPPAPRTRDIARAVRFL 630 YG F+ SLP RTR + RF Sbjct: 628 SYGKLFVNSLPNMTRTRKLDVVQRFF 653 >UniRef50_UPI0000E87EB6 Helicase c2:DEAD/DEAH box helicase, N-terminal n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87EB6 Length = 643 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 264/636 (41%), Positives = 379/636 (59%), Gaps = 7/636 (1%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 +T+ F +G L++ I G++ R Q +M+ V AI+ +PLVVEAGTG GKT+AYLAPAL Sbjct: 6 ITEFFDVNGPLSEVIEGYQIRPSQVEMSQMVDAAIKNQEPLVVEAGTGIGKTFAYLAPAL 65 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 A KVIIST +K LQDQL+++D+P + +ALK V LLKGR+NY+C RL+ G Sbjct: 66 AAGGKVIISTATKNLQDQLFNKDIPKIREALKIPIKVNLLKGRANYVCQLRLDDSIQGGQ 125 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + + + + ++ +S+ + G+IS +V E S WP+VTST DNCLG C K CF Sbjct: 126 FVNKEDGAYLEKIKQFSDHSNSGEISEVENVPEFSTIWPMVTSTADNCLGQGCEFAKSCF 185 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 ++KARK+A++A+VV+VNHHLF AD ++K+ E++P+AD +IFDEAHQ+PDIAS +FG Sbjct: 186 LLKARKEALNAEVVIVNHHLFFADFMLKDEDISEILPKADTVIFDEAHQVPDIASIFFGN 245 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 + S+ +L+ L +D + Y K+ ++L A + + + RL+ G R ++ Sbjct: 246 NFSTNELIYLMQDAQLLYDKLGKNQKKLIDIASGVQEEIKHLRLEFGSSSERVTFEKITN 305 Query: 301 NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKR-LKEINQPGYSY 359 + + + E + L +S ER +L LKE N Y Y Sbjct: 306 IDKFTEKLQSIHSSFEQLGKIFSLLDDQSPEQKKIMERYEGILEKLSHWLKEKNDQ-YVY 364 Query: 360 WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES 419 W + S+ +TP S+A+ F Q SWIFTSATL+VND F + +G+ A S Sbjct: 365 WLDIFSKSIQFNMTPFSIAEGFGRFRKQNKISWIFTSATLAVNDSFDFFQNLMGLSDATS 424 Query: 420 LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 L SPFD+ A L V N+P N + P+I+A GR F+L TS MR+ Sbjct: 425 KKLNSPFDFKNNACLYVPNNMPDPNSSIFNLTIIKKTYPLIQAAKGRTFILSTSLKSMRE 484 Query: 480 LAEQFRAT-----MTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSL 534 ++ ++ + P+L QGE SK L+++F S GNA+L+ + SFWEG+DVRG +LSL Sbjct: 485 ISALLKSEFEEHDINFPILTQGEDSKRTLIERFKSYGNAVLIGSMSFWEGIDVRGPSLSL 544 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 VIIDKLPF SP DP+ ++R+ + G +PF QLP A+I+LKQG GRLIRD D+GVL Sbjct: 545 VIIDKLPFHSPGDPVFESRINRLKALGENPFMSFQLPQAIISLKQGAGRLIRDEIDKGVL 604 Query: 595 VICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 +ICD R++ +PYG SLP RTR+ FL Sbjct: 605 MICDPRIIDKPYGKRIWKSLPDFKRTRNELDVTDFL 640 >UniRef50_C0N252 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N252_9GAMM Length = 639 Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust. Identities = 270/647 (41%), Positives = 388/647 (59%), Gaps = 33/647 (5%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 FA G L+ + G+ R Q +MA V++A+ + L+ EAGTGTGKT+AYLAPA+ + + Sbjct: 9 FAEGGLLSNHVEGYSARTQQIEMAEKVSEALANNEVLIAEAGTGTGKTFAYLAPAMLSGQ 68 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 KV ISTG+K LQDQL+ +DLP + + L ALLKGRSNYLC RL ALA + P Sbjct: 69 KVFISTGTKNLQDQLFKKDLPKLREVLSVPLKAALLKGRSNYLCHHRL---ALAESE-PS 124 Query: 125 QILSDVIL--LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVV 182 + L LR W +T GD+S + E S WP VTST DNCLG CP Y DCF+V Sbjct: 125 AVYQQHTLQTLREWMGKTSSGDLSETDLLEEQSPLWPKVTSTIDNCLGQQCPDYDDCFIV 184 Query: 183 KARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 +AR+KA +AD+V++NHHL ++DM +K SG GE++P+AD I DEAHQLP IASQ+ G + Sbjct: 185 EARRKAQEADIVIINHHLLMSDMALKASGQGEVLPDADAFIIDEAHQLPAIASQFLGHRV 244 Query: 243 SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANP 302 SS Q+ +L++D + D + +++ A+++ F+L LG+ R L Sbjct: 245 SSHQIQELSRDSIREMELDATDMEDIRQSAEKIDNRLHQFKLTLGDKEQR------LPWY 298 Query: 303 QIQRAFLLLDDTLE-LCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY-- 359 Q+ + D L+ L + KL L+ A ER +R +EI + + Sbjct: 299 QVVQQQTTTQDALDSLIMAIEKLEQS----LEPASERGRGLEQCYQRCQEIIKKLNVFSD 354 Query: 360 ---------WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTS 410 W + F L TP ++ F++ +A KP +W+FTSATL+V ++F Sbjct: 355 NETDDNLILWLDVRGASFILHATPQEISQHFQQWIADKPSAWVFTSATLTVAGKFNNFIQ 414 Query: 411 RLGIEQAESLLLPSPFDYSRQALLCV--LRNLPQTNQPGSARQLAAMLRPIIEANNGRCF 468 +LGI+ + SPFDY+ Q+LL + + P N S +A + + +IE + GR F Sbjct: 415 QLGIDDPVTKSWQSPFDYASQSLLYMPSIPVEPSNNSYNS--HIANIAKAVIEYSQGRIF 472 Query: 469 MLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 +L TS+ + ++A+ + M P+L+QG +K QLL +F GNA+L+ T+SFWEGVDVR Sbjct: 473 LLFTSYRALHEVADALQ-DMEYPILVQGAGAKSQLLAEFREHGNAVLLGTNSFWEGVDVR 531 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 G+ LS V+IDK+PF SP DP+L+AR+ R RGG+PF +Q+P AVI LKQG+GRLIRD Sbjct: 532 GEALSCVLIDKIPFASPGDPVLEARINHLRERGGNPFRSIQIPSAVIQLKQGIGRLIRDK 591 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 D GVLV+CD R + +PYG F+ SLPP P T+ + F ++ ++ Sbjct: 592 RDYGVLVLCDPRFLSKPYGKIFMRSLPPMPITQQLDDVAEFFSLKAT 638 >UniRef50_B2SXR3 Helicase c2 n=26 Tax=Burkholderiales RepID=B2SXR3_BURPP Length = 755 Score = 494 bits (1271), Expect = e-138, Method: Compositional matrix adjust. Identities = 295/709 (41%), Positives = 394/709 (55%), Gaps = 97/709 (13%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIE---KGQP--------------------- 40 FA +G LA+ I G++ R Q +M+ AV A+E + P Sbjct: 47 FAANGLLARQIDGYRSRASQIEMSRAVAAAMEASGRAMPEPAMFEAQKRPARRLQGAADT 106 Query: 41 -------------------LVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYS 81 L+VEAGTGTGKTYAYL PA+ KVI+STG+K LQDQL+ Sbjct: 107 AAEAAEGVEAGGLDGSENTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQDQLFQ 166 Query: 82 RDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP----VQILSDVILLRSWS 137 RD+PTV AL +VA+LKGR+NYLC L++ A G LP L D++ ++ Sbjct: 167 RDIPTVRDALAVPVSVAMLKGRANYLCHYYLQRTA-DNGRLPSRQETSYLQDIV---RFA 222 Query: 138 NQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVN 197 T GD + SV E + W +VTST +NCLG +CP YKDCFV++AR++A AD+VVVN Sbjct: 223 KITRTGDKAELASVPETAAVWSMVTSTRENCLGQECPHYKDCFVMQARREAQQADIVVVN 282 Query: 198 HHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIA 257 HHLF AD++++++G EL+P A+ +IFDEAHQLP+ A+ +FG++LS+ Q L+LA+D Sbjct: 283 HHLFFADIMLRDTGMAELLPTANTVIFDEAHQLPETATLFFGETLSTTQFLELARDSVAE 342 Query: 258 YRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLEL 317 ++T K L ++A+D RL E R ++ +L + + A +TLE Sbjct: 343 GLGHARETVDWVKLGATLERAARDVRLAFKEDSVRLSIGQLADDHPLFPAL----ETLET 398 Query: 318 CYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ--PGYSY---------------- 359 D +L A ERA L+R +E+ G++ Sbjct: 399 ELDALASALAGQA------ERAESIGACLRRARELQGVLAGWTTPPTPTEREAADVASTD 452 Query: 360 -------------WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLH 406 W E S L TPLSVA F + A P +WIFTSATLSV D Sbjct: 453 GKTERADPNEKVRWIEVFSHTVQLHETPLSVAPIFAKQRAGVPRAWIFTSATLSVRGDFT 512 Query: 407 HFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGR 466 H+ +++G+ S+ LPSPFDY Q LL V RNLPQ + P + P IEA+ G Sbjct: 513 HYAAQMGLNAKRSMTLPSPFDYPTQGLLYVPRNLPQPSSPMFTDAVFDAALPAIEASGGG 572 Query: 467 CFMLCTSHAMMRDLAEQFRATMT-----LPVLLQGETSKGQLLQQFVSAGNALLVATSSF 521 FMLCT+ + ++ + R T+ P+L+QG+ S+ +LL +F S GNA+LV + SF Sbjct: 573 VFMLCTTLRAVDRISAKLRDTIEARGWDYPLLVQGDASRTELLDRFRSYGNAILVGSQSF 632 Query: 522 WEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGV 581 WEGVDVRGD LSLV+IDKLPF PDDP+L AR+E +G PF QLP AVITLKQG Sbjct: 633 WEGVDVRGDALSLVVIDKLPFAPPDDPVLSARLEALTKKGLSPFAVHQLPQAVITLKQGA 692 Query: 582 GRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 GRLIR DRGVL+ICD RLV +PYG SLPP RTR+I F Sbjct: 693 GRLIRAETDRGVLMICDTRLVDKPYGRRIWQSLPPFKRTREIEVVREFF 741 >UniRef50_B2JIT4 Helicase c2 n=59 Tax=Betaproteobacteria RepID=B2JIT4_BURP8 Length = 757 Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust. Identities = 294/698 (42%), Positives = 392/698 (56%), Gaps = 79/698 (11%) Query: 1 MTDDFAPDGQLAKAIPGFKPR-------------------------------EPQRQM-- 27 + D FA DG LA+ I G++PR P R++ Sbjct: 51 LADIFAADGLLARQIDGYRPRASQIEMARAVAAAMEASGRAMPEPAMFEAQKRPARRLQH 110 Query: 28 -------------AVAVTQAIEKGQ-PLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 A + A+E G+ L+VEAGTGTGKTYAYL PA+ KVI+STG+K Sbjct: 111 TSSASATDAPADQASSPEGALEGGENTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTK 170 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP----VQILSD 129 LQDQL+ RD+PTV AL +VA+LKGR+NYLC L++ A G LP L D Sbjct: 171 HLQDQLFLRDIPTVRDALAVPVSVAMLKGRANYLCHYYLQRTA-DNGRLPSRQETSYLQD 229 Query: 130 VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAM 189 +I ++ T GD + SV E + W +VTST DNCLG +CP YKDCFV++AR++A Sbjct: 230 II---RFAKITRTGDKAELASVPETAAVWSMVTSTRDNCLGQECPHYKDCFVMQARREAQ 286 Query: 190 DADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLD 249 AD+VVVNHHLF AD++++++G EL+P A+ +IFDEAHQLP+ A+ +FG++LS+ Q L+ Sbjct: 287 QADIVVVNHHLFFADIMLRDTGMAELLPTANTVIFDEAHQLPETATLFFGETLSTTQFLE 346 Query: 250 LAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFL 309 LA+D +D K L +SA+D RL E R ++ +L + + A Sbjct: 347 LARDSVAEGLGHARDAVDWVKLGAALERSARDVRLAFKEDSVRLSIGQLPDDHPLFPALE 406 Query: 310 LLDDTLELCYDVAKLSLGRSALLDAAFERA----------TLYRTRLKR--------LKE 351 ++ L+ R+ L A RA T T +R E Sbjct: 407 AVETELDALASALAGQSERAESLGALLRRARELQEVLAGWTAPPTEAERDAASDAGAAPE 466 Query: 352 INQPGYSY-WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTS 410 + P W E S L TPLSVA F + A P +W+FTSATLSV D H+ + Sbjct: 467 KSDPNEKVRWIEVFSHTVQLHETPLSVAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAA 526 Query: 411 RLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFML 470 ++G+ S+ LPSPFDY Q LL V RNLPQ + P + P IEA+ G FML Sbjct: 527 QMGLNSRRSMTLPSPFDYGTQGLLYVPRNLPQPSSPMFTDAVFDAALPAIEASGGGVFML 586 Query: 471 CTSHAMMRDLAEQFRATM-----TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGV 525 CT+ + +A + R + +P+L+QG+ S+ +LL +F S GNA+LV + SFWEGV Sbjct: 587 CTTLRAVDRIASKLRDVIESRGWNMPLLVQGDASRTELLDRFRSYGNAILVGSQSFWEGV 646 Query: 526 DVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLI 585 DVRGD LSLV+IDKLPF PDDP+L AR++ +G PF QLP AVITLKQG GRLI Sbjct: 647 DVRGDALSLVVIDKLPFAPPDDPVLSARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLI 706 Query: 586 RDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDI 623 R DRGVL+ICD RLV +PYG SLPP RTR++ Sbjct: 707 RSETDRGVLMICDTRLVDKPYGRRIWQSLPPFKRTREM 744 >UniRef50_Q5ZU85 ATP dependent DNA helicase (DEAD box family) Rad3 n=6 Tax=Legionella RepID=Q5ZU85_LEGPH Length = 666 Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust. Identities = 274/634 (43%), Positives = 376/634 (59%), Gaps = 24/634 (3%) Query: 9 GQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVII 68 G+L+ AIPGF R PQ +AVA+ AI + LV EAGTGTGKT+AYL P L + KK +I Sbjct: 33 GRLSTAIPGFVARAPQADLAVAIANAIVQRSILVAEAGTGTGKTFAYLLPCLLSGKKALI 92 Query: 69 STGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILS 128 ST +K LQDQL+ +DLPT+ +AL + + LKGRSNY+C R+E+ A G Q Sbjct: 93 STATKTLQDQLFQKDLPTLIRALGLSVRIQNLKGRSNYICQYRVEKHAEEGQFQSPQCAH 152 Query: 129 DVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKA 188 +++ +R +Q +G S + EDS W VTST DNCLG++CP ++ CF+VKARK+A Sbjct: 153 EILHVRDKLSQMQEGVRSELPEINEDSSVWHYVTSTTDNCLGAECPNHETCFLVKARKRA 212 Query: 189 MDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL 248 M+AD+VV+NHHLF AD +K+ GF EL+P DV++FDEAHQL DIAS + G+ L +RQ Sbjct: 213 MEADIVVINHHLFFADSQLKKDGFSELLPGVDVVVFDEAHQLADIASNFNGERLGTRQFK 272 Query: 249 DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA- 307 DL D+ + Q L+ + + + L R + + N + A Sbjct: 273 DLVDDMLNEWPILDLANQPLKSISHKADKLVDQLLNALPTREERISWDLVKRNKEFMEAW 332 Query: 308 --FLLLDDTLELCY------DVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359 +L L D L C D+ L + LLD T L E N Sbjct: 333 NTWLSLKDELIQCLESKDTADIPGLKRCKERLLD--------LETVLLSFTEENNHKIR- 383 Query: 360 WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES 419 W E TP VA+ F +L+ + ++IFTSATL++ F LG+++ ++ Sbjct: 384 WIERFKHTLVFHATPYDVAESFSQLLKDQSCAYIFTSATLTMASVFDSFCKPLGLDKVQT 443 Query: 420 LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLR---PIIEANNGRCFMLCTSHAM 476 LLL SPFDY +QALL + R +P P A A+L P+IEA GRCF L TSH Sbjct: 444 LLLSSPFDYQQQALLYLPRGIP---DPKDAHYYEALLEKALPVIEACGGRCFFLFTSHKA 500 Query: 477 MRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 ++ +A+ T+ P+L+QG+ +K LL +F GNA+L+ TS+FWEGVDV+G+ LS VI Sbjct: 501 VKLVAQMMSNTLKYPLLIQGDEAKPILLSRFRQLGNAVLLGTSTFWEGVDVKGEALSCVI 560 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 IDKLPF +P DP+++ RM + +G FDE+ LP+AVI LKQGVGRLIRD D+G+L+I Sbjct: 561 IDKLPFANPVDPVIRGRMSYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITDKGILMI 620 Query: 597 CDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 D RL R YG T LASLP P+TRD + + F+ Sbjct: 621 ADPRLTGREYGRTILASLPGLPKTRDEEKVLHFI 654 >UniRef50_B4ST01 Helicase c2 n=23 Tax=Gammaproteobacteria RepID=B4ST01_STRM5 Length = 681 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 281/647 (43%), Positives = 381/647 (58%), Gaps = 37/647 (5%) Query: 9 GQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVII 68 G LA + F PR Q ++ A+ A+++ L+ EAGTGTGKT+AYL P L + + II Sbjct: 16 GALASHLDAFVPRPAQLRLTEAIADALQQRDLLLAEAGTGTGKTFAYLVPVLLSGLRTII 75 Query: 69 STGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD----LPV 124 STG++ALQDQLY RDLP V +AL ALLKGR+NYLC RL+Q A G+ P Sbjct: 76 STGTRALQDQLYHRDLPRVRQALGVGLRSALLKGRANYLCRYRLQQ---ARGEPRFSSPE 132 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 Q +L +WS ++ GDI+ +A+DS P+VTST DNCLG+DCP + DCFVV+A Sbjct: 133 QAAQFQRIL-AWSGRSEFGDIAELDGLADDSPLLPMVTSTVDNCLGTDCPFWDDCFVVRA 191 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 R++A ADVVVVNHHL LAD+ +K+ GFGEL+P A + DEAHQLP++A+Q+FG+ Sbjct: 192 RQRAQAADVVVVNHHLLLADLALKQDGFGELLPGAQAFVIDEAHQLPELAAQFFGEGFGM 251 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQI 304 R +L +D R LQ+ D+L Q+ R + RG LA PQ+ Sbjct: 252 RPWQELGRDCLAEARGVGGAQSALQEPVDQLQQALLALRSAMEGLPSRGTQWRALAMPQV 311 Query: 305 QRAF-------LLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGY 357 + F ++L+ L+ + A A LDA RA +RL R ++P Sbjct: 312 RDGFDTVMAGLVMLEQALQPLREAA-------AGLDACHARAREAVSRLSRWLGDDEPTL 364 Query: 358 SY--------------WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVND 403 + WYE T R F TP+ V+ +E + +WIFTSATL+V Sbjct: 365 DFDTDPSEANSAADVLWYELTPRGFRCQRTPMDVSGPLREHRERSRAAWIFTSATLTVGG 424 Query: 404 DLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEAN 463 H +RLG++ +L+ PSPF++ QAL + LP G L LRP+++A+ Sbjct: 425 GFDHIATRLGLDDPHTLVQPSPFNWPEQALCYMPEGLPDPAARGFGTALIQSLRPVLQAS 484 Query: 464 NGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWE 523 GR F+L SH +R+ AE R P+ +QGE + LLQ+F +GN +L+ ++SF E Sbjct: 485 QGRAFLLFASHRALREAAEALR-DGPWPLFVQGEAPRATLLQRFRESGNGVLLGSASFRE 543 Query: 524 GVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGR 583 GVDV G+ LS+V+IDKLPF +PDDP+ +AR+E R +GG+PF + QLP AVI LKQGVGR Sbjct: 544 GVDVVGEALSVVMIDKLPFAAPDDPVYEARLEAIRSQGGNPFRDEQLPQAVIALKQGVGR 603 Query: 584 LIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 LIR DRGVLV+CD RL+ R YG FL SLPP RTR +A F Sbjct: 604 LIRSESDRGVLVLCDPRLLNRGYGRVFLDSLPPFRRTRSLADVQAFF 650 >UniRef50_B5EML2 Helicase c2 n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EML2_ACIF5 Length = 641 Score = 476 bits (1224), Expect = e-132, Method: Compositional matrix adjust. Identities = 260/615 (42%), Positives = 362/615 (58%), Gaps = 3/615 (0%) Query: 9 GQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVII 68 G LA+A+P F+ RE Q+ MA V + G ++EAGTGTGKT+AYL PA+ + +KV++ Sbjct: 19 GALARALPQFRAREQQQAMAAQVAHTLRDGGVALIEAGTGTGKTFAYLLPAMLSGRKVLV 78 Query: 69 STGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILS 128 STGSKALQDQ+ +D+P + +A+ V+ LKGR+NYLC RL Q+ A G P +++ Sbjct: 79 STGSKALQDQILEKDIPLLLRAMGKPLRVSRLKGRANYLCRHRL-QRFSAEGVAPA-LVA 136 Query: 129 DVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKA 188 + + W+ +T +GD+S SV EDS WPLVTST DNC GS+CP Y C V++AR++A Sbjct: 137 PLARVADWAGRTREGDVSELTSVPEDSPIWPLVTSTRDNCPGSECPEYGRCHVIEARRQA 196 Query: 189 MDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL 248 +A+++VVNHHL +D+ +K +G G+L+P D M+ DEAHQ+ D+A +YFGQ LSS QL Sbjct: 197 QEAEILVVNHHLLFSDLALKANGMGDLLPRVDAMVLDEAHQVLDLAGRYFGQHLSSHQLW 256 Query: 249 DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF 308 D +D E D + L A ++ +R LG RG+ L + AF Sbjct: 257 DWGRDSRAETLAEAGDDEGLLAAAAQVETQTTAWRTVLGPGDERGSW-ALNPDSAEGSAF 315 Query: 309 LLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF 368 L + + R L+ R + + N P +W E SR Sbjct: 316 ARLRQAVAELGQALNAAAARGKGLEQCAARGVVLLATVDFFAAHNAPNMVFWQEKKSRTV 375 Query: 369 TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDY 428 L TPL VA + + + S I TSATL V D LG+ +L SPFDY Sbjct: 376 QLHATPLDVAAPLQRHLLEPVESVILTSATLRVGDSFASTERALGLTAVSTLTAASPFDY 435 Query: 429 SRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 +RQ+LL + +P+ P R P+IEA+ GR F L TSH +++ A + Sbjct: 436 ARQSLLYLPPLMPEPGHPSYTRACLDAAAPVIEASGGRTFFLFTSHRALQEAAVSLPQRL 495 Query: 489 TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDP 548 + P+L+QG + +LL +F S GNA+L+ +SFWEGVDV+G+ LS VIIDKLPF +P DP Sbjct: 496 SFPILVQGSMPRPRLLDRFRSLGNAVLLGAASFWEGVDVQGEALSCVIIDKLPFANPSDP 555 Query: 549 LLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGA 608 +L+AR E C+ GG+PF E+Q+P AVI L+QGVGRLIR DRGVL++CD RL + YG Sbjct: 556 ILRARTEQCQAEGGEPFRELQIPQAVIALRQGVGRLIRSEMDRGVLMLCDPRLRSKGYGR 615 Query: 609 TFLASLPPAPRTRDI 623 FL SLPP R + Sbjct: 616 IFLDSLPPMRRVSSL 630 >UniRef50_A9IIW5 Probable ATP-dependent helicase n=6 Tax=Proteobacteria RepID=A9IIW5_BORPD Length = 693 Score = 470 bits (1209), Expect = e-131, Method: Compositional matrix adjust. Identities = 281/690 (40%), Positives = 389/690 (56%), Gaps = 67/690 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 +++ FA DG LA A+PG+ PR Q ++A A+ +AI LV EAGTG GKT+AYL PA Sbjct: 6 ISEFFAADGPLASALPGYAPRPAQVELAQAIGRAITDRATLVAEAGTGIGKTWAYLVPAF 65 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 A KVIISTG++ LQDQLY+RDLP V AL ALLKGR+NY+C L++ L G Sbjct: 66 VAGGKVIISTGTRTLQDQLYTRDLPRVRAALAAPVTAALLKGRANYVCHYHLDR--LQGD 123 Query: 121 DLPVQILSDVILLRS---WSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 + ++ +++ LR ++ + GD + V ED+ W VTST +NCLG DCP + Sbjct: 124 ERALKSRTEISQLRQIQVFAGISKTGDRADLGKVPEDADIWQRVTSTRENCLGQDCPRIR 183 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 DCFVVKAR++A +ADVVVVNH LF+AD+V++E G +L+PEAD +IFDEAHQLPD A+++ Sbjct: 184 DCFVVKARRQAQEADVVVVNHALFMADLVLREEGVTDLLPEADTVIFDEAHQLPDTATRF 243 Query: 238 FGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE----PGYRG 293 G S+S+ QLLD + + A ++ + + ++ +A++ RL PG + Sbjct: 244 LGSSVSTHQLLDFGRALEAAGLAYAREAAKWSDVSRQVETAARELRLACAPLDQLPGRKA 303 Query: 294 NLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSAL----LDAAFERATLYRTRLKRL 349 + Q A L + D A +LG A L AA RL R Sbjct: 304 TFEAIPEPAQFDAALAALRQAV----DAATRALGAVAEKHPDLAAAARGGAEISLRLARW 359 Query: 350 KEINQPGYSY------------------------------------------WYECTSRH 367 + G ++ W E H Sbjct: 360 ALPAREGAAHDDEGWGRDTHALTQPADDGPAVPQAVLQGLSAAADYTGPAVRWVEHGQHH 419 Query: 368 FTLALTPLSVADKFKELMAQKPG-SWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPF 426 L PLSVA F +KPG +WI TSATLSV+ D HH+TS+LG+ A + SPF Sbjct: 420 VRLHSAPLSVAQAFSRF--RKPGQAWILTSATLSVHGDFHHYTSQLGLNDARTGRWESPF 477 Query: 427 DYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTS-HAMMRD---LAE 482 DY+ Q LL V R++P+ P A + L P+++A+ G +LCT+ A+ R LAE Sbjct: 478 DYTGQGLLFVPRDMPEPQSPRFAERFVQTLMPLLQASPGGTLVLCTTLRAVDRVAGLLAE 537 Query: 483 QFR-ATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLP 541 F P+L QG+ ++ LL++F + +LV ++SFWEG+D+ GD L+LV IDKLP Sbjct: 538 AFEDHGHEWPLLKQGDATRRDLLERFCKLEHPVLVGSASFWEGIDLPGDVLTLVAIDKLP 597 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 F PDDP+++AR+ CR+RGG+PF E QLP+A I+LKQG GRLIR D GVL++ D RL Sbjct: 598 FAPPDDPVIEARLRACRVRGGNPFAEYQLPEAAISLKQGAGRLIRTESDWGVLMVGDARL 657 Query: 602 VMRPYGATFLASLPPAPRTRDIARAVRFLA 631 V +PYG LPP RTRD+ + F A Sbjct: 658 VEKPYGKRLWRGLPPFSRTRDLNEVLAFYA 687 >UniRef50_Q31G59 Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31G59_THICR Length = 636 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 242/623 (38%), Positives = 355/623 (56%), Gaps = 9/623 (1%) Query: 8 DGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVI 67 DGQL++ ++ R Q +MA V + I++ Q L+ EAGTGTGKT+AYL PAL + KKVI Sbjct: 14 DGQLSQNTSDYEVRHAQVEMAETVAEVIDEDQTLLAEAGTGTGKTFAYLIPALLSGKKVI 73 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 +ST +K LQDQL +D+P + G +LKGR NY+C +RLE A + ++ Sbjct: 74 VSTATKTLQDQLLRKDIPLLMDICNAKGTAKILKGRENYICPQRLEIAETAEQNTK-EVW 132 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 + L+ W +T+ GD S ++ E+ W V + + C ++C CF +++ Sbjct: 133 RKLSLIHDWQEKTLIGDKSELTTLDENDPIWSRVCARMEFCQANECTGDNGCFYPGVKQQ 192 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 A DA++++VNHHLF AD+ ++E GFGE++PEAD+ IFDEAHQLPDIA+Q+ G S+S QL Sbjct: 193 ATDAEILIVNHHLFCADLALREQGFGEILPEADIYIFDEAHQLPDIAAQFLGFSVSRFQL 252 Query: 248 LDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA 307 +L +D+ +AY+ E +T +L A + + F LG+ R + Sbjct: 253 DELVRDVRLAYKKESPETIELSDQAKAVEDKIRIFNEALGKWEKRWTWESFSEAKTGHKT 312 Query: 308 FLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH 367 L + L L +V K R LL A ++R + +++ + + W E + Sbjct: 313 LEHLRNQLSLLAEVIKPITDRGKLLSALYKRTQEFEKQIETWLKASSENQIRWVESSQAR 372 Query: 368 FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFD 427 F L LTPLSVA F G+WIFTSATLSVN +F RLG+E A + SPFD Sbjct: 373 FKLNLTPLSVAAPFSRQRDALGGAWIFTSATLSVNQSFDYFAHRLGLESARTHQWESPFD 432 Query: 428 YSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD----LAEQ 483 Y +QA++ LP P + P++ A+ GR F+L TSH +++ L++ Sbjct: 433 YEQQAVIYHPIGLPDPKHPDYIKICLRAAWPLLLASQGRAFLLFTSHKALQEAKVILSQH 492 Query: 484 FRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFT 543 + T+ ++QG+ K LL +F NA+L+ TSSFWEGVDV+GD L LV+ID++PF Sbjct: 493 WEGTL----MVQGDGPKTTLLARFKETENAILLGTSSFWEGVDVKGDALKLVLIDRIPFI 548 Query: 544 SPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 PDDP+++AR + +G F Q+P+A I LKQG GRLIRD+ D+GVL++CD RL Sbjct: 549 PPDDPVVQARESFLKQKGLSGFFNFQIPEATIALKQGAGRLIRDSSDKGVLMLCDPRLTQ 608 Query: 604 RPYGATFLASLPPAPRTRDIARA 626 +PYG S P D+ A Sbjct: 609 KPYGKIITNSFPSFKWVYDVNEA 631 >UniRef50_C6NRY2 DinG family ATP-dependent helicase YoaA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NRY2_9GAMM Length = 646 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 278/641 (43%), Positives = 378/641 (58%), Gaps = 34/641 (5%) Query: 8 DGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVI 67 D L + +P F R Q++MA V + +G +VEAGTGTGK++AYL PAL ++KV+ Sbjct: 14 DSPLRRILPHFHVRRQQQEMAAQVAGWLAEGGVGLVEAGTGTGKSFAYLLPALLCERKVL 73 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 IST S+ALQDQ+ +D+P +++A V LKGRSNYLC RL Q+ALA G P ++ Sbjct: 74 ISTASRALQDQILDKDIPVLAQAWSSPRRVVRLKGRSNYLCPFRL-QRALAEGVAP-RLA 131 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 D++++ W+ +T +GDI+ ++ E S WPLVTST DNCLGSDCP + C V+ ARK+ Sbjct: 132 RDLLVVADWAGRTGEGDIAELSALPESSPVWPLVTSTRDNCLGSDCPEFARCPVIAARKR 191 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 A++ADVVVVNHHL LAD+ ++ G+L+P D +I DEAHQL D+A QYFGQ LSS QL Sbjct: 192 ALEADVVVVNHHLLLADLALRVESRGDLLPRVDAVIIDEAHQLADLAGQYFGQHLSSHQL 251 Query: 248 LDLAKDITIAYRTELKDTQQLQKCADRLAQS-----AQDFRLQLGEPGYRGN---LRELL 299 L+ A+D A +D +L A RL Q AQ +L GE + ++ L Sbjct: 252 LEWARDSRQALLAAARDDAELGLPA-RLEQHIEHWLAQGQQLPGGESRWEWPSFPVQVLT 310 Query: 300 AN-PQIQRAFLLLDDTLELCYDVAK---LSLGRSALLDAAFERATLYRTRLKRLKEINQP 355 A+ Q+ L+ TL+ + +K GR L E LK ++P Sbjct: 311 ASLRQVASEAAQLESTLQSLREFSKELEQCAGRGEQLTGLLEFF---------LKPESEP 361 Query: 356 GYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE 415 W E R L +P+ + + + + + I SATL V D +RLG+ Sbjct: 362 SAVRWLERRGRGLLLHASPIDLGPLLRGELFARNATTILVSATLRVGGDFGALEARLGLV 421 Query: 416 QAE----SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLR---PIIEANNGRCF 468 + E + SPFDY+ QALL + PQ +P S + AA + P+IEA+ GRCF Sbjct: 422 EGEPSPQHFVADSPFDYTCQALLYLP---PQMPEPASPQFTAACIEAAIPVIEASGGRCF 478 Query: 469 MLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 L TSH +R+ A + + P+L+QG + +LL F AGNA+L+ +SFWEGVDV+ Sbjct: 479 FLFTSHRALREAAVELPQRLDFPILVQGSMPRARLLDAFRRAGNAVLLGAASFWEGVDVQ 538 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 G+TLS VIIDKLPF +P DP+L+A C GGDPF ++QLP AVI L+QGVGRLIR Sbjct: 539 GETLSCVIIDKLPFANPGDPVLRAHHRHCAAMGGDPFRDLQLPQAVIALRQGVGRLIRSE 598 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRF 629 DRGVL ICD RL+ + YG FL SLPP P +DIA F Sbjct: 599 SDRGVLTICDPRLLNKGYGRIFLRSLPPIPVVQDIAAVREF 639 >UniRef50_B1XY97 Helicase c2 n=2 Tax=Burkholderiales Genera incertae sedis RepID=B1XY97_LEPCP Length = 658 Score = 441 bits (1135), Expect = e-122, Method: Compositional matrix adjust. Identities = 267/656 (40%), Positives = 369/656 (56%), Gaps = 50/656 (7%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 FA G LA+ F+PRE Q ++A AV A+E+ LV EAGTG GKTYAYL P L + Sbjct: 15 FAATGVLARTEKQFRPREVQTRLADAVAHALEERSVLVAEAGTGVGKTYAYLVPLLLSGL 74 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP- 123 + ++ST +K+LQDQLY RDLP + + L VALLKGR++YLCL RL+ A +LP Sbjct: 75 RALVSTATKSLQDQLYLRDLPRLVQLLGLPVQVALLKGRASYLCLHRLDH-ARHTAELPD 133 Query: 124 ---VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 +++L+ V WS T GD++ + E S PLVTS +NCLGSDCP ++ C Sbjct: 134 RHSLRVLARV---EQWSKTTRSGDLAELEVLDERSPVIPLVTSNRENCLGSDCPQFRQCH 190 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 +V+AR++AM AD+VVVNHHLF ADM ++++G EL+P D ++FDEAHQL + Q+ G+ Sbjct: 191 LVQARREAMQADIVVVNHHLFFADMALRDTGMAELLPSVDAVVFDEAHQLNEAGVQFLGR 250 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 + + QLLD+ +D+ A + Q Q A + Q A+ RL G LR Sbjct: 251 HIGTGQLLDIGRDLLAAGLAHARGLQDWQALAGAVEQGARRLRLACA-----GTLRA--- 302 Query: 301 NPQIQRAFLLLDDTLELCYD-VAKLSLGRSALL----------DAAFERATLYRTRLKRL 349 A L D L D VA L+ R+A + DAA + A L Sbjct: 303 ------AGRLRWDERGLSEDFVAALTDARAACVAASDALGVVADAAPDLAKLQERAQALA 356 Query: 350 KEIN------QPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVND 403 ++ + G+ W + T LA +PL + + +E + + +WIFTSATL + Sbjct: 357 AQLAAFLGPVEHGHVRWIDLTLHQARLAESPLDIRETLREQIEGERRAWIFTSATLGDDP 416 Query: 404 DLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLP---QTNQPGSARQLAAMLRPII 460 L FT G+E A +L SPFDY R A L V P + P + QLAA Sbjct: 417 ALSWFTRSAGVEDAHTLRAGSPFDYGRNARLFVPARFPRPSEATHPAAVSQLAAR---CA 473 Query: 461 EANNGRCFMLCTSHAMMRDLAEQFRATM-TLP----VLLQGETSKGQLLQQFVSAGNALL 515 +A GRCF+L T+ ++ + RA + TLP VL+QGE K L+ +F++ A+L Sbjct: 474 QALGGRCFVLTTTLRALQGIGADLRARLATLPDPIDVLVQGEAPKRALMARFLATPRAVL 533 Query: 516 VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVI 575 V + SFWEG+DV G L V+IDKLPF P+DPL +AR +GG PFD+ +P+A + Sbjct: 534 VGSHSFWEGIDVPGSALQCVLIDKLPFPPPNDPLAEARCRSLEAQGGKPFDDYFIPEAAV 593 Query: 576 TLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 LKQG GRLIR DRG+LVICD RL+ YG + +LPP P D A A+++LA Sbjct: 594 ALKQGAGRLIRSETDRGLLVICDTRLLTMNYGRRLMGALPPMPLVGDEAEALQWLA 649 >UniRef50_C7I1U8 Helicase c2 n=1 Tax=Thiomonas intermedia K12 RepID=C7I1U8_THIIN Length = 676 Score = 436 bits (1121), Expect = e-120, Method: Compositional matrix adjust. Identities = 254/650 (39%), Positives = 354/650 (54%), Gaps = 28/650 (4%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 F+P L + +P + RE QR++A+AV AI L+ EAGTGTGKT AYL PAL Sbjct: 27 FSPGSPLQEELPQWSVREGQRELAMAVAGAIADRAILMAEAGTGTGKTLAYLVPALLHGG 86 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA--LAGGDL 122 +VIIST ++ LQDQLY++DLP +AL + +LKGRSNY+CL RL++ A + G Sbjct: 87 RVIISTATRNLQDQLYNKDLPAARRALGAAVSTCVLKGRSNYVCLYRLQRAAEWVHGRHA 146 Query: 123 PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVV 182 Q+ + ++ GD+S + E+S LVTST DNCLG+DCP YK CFV+ Sbjct: 147 HAQLRR----ITQFAKSDARGDLSALSGLEENSALNFLVTSTTDNCLGADCPDYKACFVM 202 Query: 183 KARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 KAR++A+ +DVV++NHHLF AD+ ++ G EL+P AD +I DEAHQL +I Q+ G Sbjct: 203 KARREALASDVVIINHHLFFADLALRGEGVAELLPTADTLILDEAHQLAEIGVQFLGARC 262 Query: 243 SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANP 302 + Q++DL++D+ K Q + L ++A+D RL + R + ++L P Sbjct: 263 GTAQVVDLSRDVLAGGLQHAKGLADWQTLSGALERAARDLRLAAPQNPGRLSQPQVLDLP 322 Query: 303 QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLK------EINQPG 356 A L L +V + +A + +R T + + + P Sbjct: 323 GWDVALHDLQAQLAHTAEVLSAHVEAAAEFERLMDRCTALHQAFSSWQAAPDPDQTDAPP 382 Query: 357 YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ 416 W + S H L PLS+A F L+AQ+ +WIFTSATLSV H + LG+ Sbjct: 383 QVRWADVGSAHLRLQAAPLSIAPAFAALVAQRSQAWIFTSATLSVGGSFRHARAALGLTS 442 Query: 417 AESLLLP---------------SPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIE 461 + P SPFDY+ Q L V ++LP NQPG + + A+ + Sbjct: 443 EQGGCAPVEGGVAPRCRELRVASPFDYAEQGRLLVPQDLPLPNQPGHSESVGALAAQLAT 502 Query: 462 ANNGRCFMLCTSHAMMRDLAEQFRATM-TLPVLLQGETSKGQLLQQFVSAGNALLVATSS 520 N G F+L T+ + +A+ RA + VL Q + SK LL +F S A+LV + S Sbjct: 503 GNTGGTFVLTTTLRAAKIIAQTLRALLPGRAVLEQFDESKAALLARFASTSQAVLVGSQS 562 Query: 521 FWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQG 580 FWEGVD+ GD L+LVIIDKLPF PDDPL AR++ G F + +P A ++L+QG Sbjct: 563 FWEGVDLPGDRLTLVIIDKLPFAPPDDPLTAARLKQIEAEGRSGFADYSMPQAALSLQQG 622 Query: 581 VGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 GRLIR DRGVLV+CD RL +G L SLPP R A A FL Sbjct: 623 AGRLIRTESDRGVLVVCDRRLTATGWGRQLLTSLPPFTRVSQTAEAQAFL 672 >UniRef50_A0L5B4 Helicase c2 n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L5B4_MAGSM Length = 660 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 240/640 (37%), Positives = 360/640 (56%), Gaps = 21/640 (3%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 F P LA+ + ++PR Q +MA V +A + L+VEAGTGTGKT AY+ P L K Sbjct: 15 FGPQSALAQCLESYEPRAAQVRMAELVARAAHQQDLLIVEAGTGTGKTLAYMLPLLAMGK 74 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 KV++ST +KALQDQ+ +DLP + + + + LLKGR+NYLCL RL Q L Sbjct: 75 KVVVSTATKALQDQILEKDLPLLRQVVGSRFSATLLKGRANYLCLHRLTQMRANRSLLRH 134 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + + + + WS+ TV GD + E WP +++ D+CLG +CP + C++ KA Sbjct: 135 EARAWLEAIEQWSSTTVQGDRDELKELPERLDIWPELSTNGDDCLGQECPDLQACYLFKA 194 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 R +A +A +VVVNHHLF AD+ V+E GFGE++PE V++FDEAHQ+PD+ +++FG +S+ Sbjct: 195 RARAKEAQLVVVNHHLFFADLAVREGGFGEILPEYQVVVFDEAHQIPDVVTRFFGLEVSN 254 Query: 245 RQLLDLAKD----ITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 Q+L+LA+D + + +L L +R A F ++ N+R+ LA Sbjct: 255 FQMLELARDCRREMDMVGMDDLDLLHHLTVIEERAALLRSAFPVE--------NVRDALA 306 Query: 301 NPQIQ----RAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPG 356 +Q RA ++ + L ++ + L RSA + + R ++ ++ P Sbjct: 307 PHHLQEEPGRALVMAEQALHKLAELLEPHLERSAGMASCGRRLEKLLIASGSIRTLDDPA 366 Query: 357 YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDD---LHHFTSRLG 413 YWYE +R L +PL+V +E++ + +FTSATL+ H+F +LG Sbjct: 367 RVYWYETRNRGVFLQASPLNVGLTMQEMLYPRVQCAVFTSATLATGQGEKGFHYFMQQLG 426 Query: 414 IEQ--AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLC 471 ++ A LP FDY QA L + R LP+ PG L ++ A+ GR L Sbjct: 427 LDAQVATCEQLPPVFDYGTQARLYLPRRLPEPTAPGFTAMFMEELVDLLHASRGRALCLF 486 Query: 472 TSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDT 531 TS+ MM + + + + PV +QGE K LL+ F + ++L+ TS+FWEGVD+ G Sbjct: 487 TSYRMMGQVQQLLPSRIPYPVYVQGERPKRALLEMFKNHEASVLLGTSTFWEGVDIPGAA 546 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 LS+V+ID+LPFT PDDP+ AR C GG+PF ++ +P A++TLKQG GRL+R DR Sbjct: 547 LSMVVIDRLPFTPPDDPISAARNRYCESEGGNPFMQLSVPQAILTLKQGAGRLLRRRSDR 606 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 GV+ + D R+ RPYG F+ LPPA D+ F A Sbjct: 607 GVIAVLDTRISRRPYGKRFINGLPPATCIYDLQEVQHFFA 646 >UniRef50_C9YB00 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YB00_9BURK Length = 667 Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust. Identities = 258/640 (40%), Positives = 354/640 (55%), Gaps = 41/640 (6%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 F+P G LA A+ + PR+ Q+ MA AV I+ G LVVEAGTG GKT+AYL PAL + + Sbjct: 13 FSPRGLLAGAVAEYLPRKGQQDMAAAVAGNIQDGGVLVVEAGTGVGKTFAYLVPALLSGQ 72 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG---GD 121 KV++ST +KALQDQL++RD+P + + LK VALLKGRS+Y+CL RL +G Sbjct: 73 KVLLSTATKALQDQLFTRDIPELLEILKIPVRVALLKGRSSYVCLHRLANARHSGILQSA 132 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 P+++L V SW T GD+S ++ E Q PLVTST +NC S CP Y++C + Sbjct: 133 APLRLLGQV---ESWVTATRTGDVSEVPALEESQQLLPLVTSTRENCTTSKCPRYQECHL 189 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS 241 KAR+ AM ADVVV+NHHLF AD V+ESG EL+P + ++FDEAHQL DI Q+ G+ Sbjct: 190 YKARRDAMAADVVVINHHLFFADSNVRESGVAELLPTVNAVVFDEAHQLNDIGVQFLGRQ 249 Query: 242 LSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEP------------ 289 S+ QLL+L +D+ + Q ++L + D +L E Sbjct: 250 WSTLQLLNLGRDVVFVCLQWARGMANWQLLVEQLEMAVVDMQLVCQESAANTPRLPWQAL 309 Query: 290 ---GYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRL 346 G L E +Q LL L+ D L A ERA++ + L Sbjct: 310 VPEGLSPGLWERRLRRLLQAHATLL-QALQGVADA-------HPELAALAERASVLKDHL 361 Query: 347 KRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKE-----LMAQKPGSWIFTSATLSV 401 R + G W + +R +P+ ++D + L A SW FTSATL Sbjct: 362 DRAALPAEDGLIRWMDNGTR-LRFVESPMDISDAMRSKVTGALEAGSRVSWTFTSATLGP 420 Query: 402 NDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIE 461 DL F + G+ A L + SPF+Y QA L V +P + P ++AA+ E Sbjct: 421 GSDLAWFVNSAGLHGANVLKVESPFNYEHQAALYVPGAIPAPSHPNHGTRVAALAAEGAE 480 Query: 462 ANNGRCFMLCTSHAMMRDLAEQFRA----TMTLPVLLQGETSKGQLLQQFV--SAGNALL 515 GR +L T+ MR + E R + + VL+QGE+SK +LL++F +L Sbjct: 481 ILGGRTMVLTTTLRAMRLIGETIRKLLPPHLDMAVLVQGESSKRELLERFQQREGLGCVL 540 Query: 516 VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVI 575 VA++SFWEGVD+ G +L L++IDK+PF PDDPLL+AR + GG F+EVQLP A + Sbjct: 541 VASASFWEGVDIPGRSLLLLLIDKIPFAPPDDPLLQARCKQVDEAGGSSFNEVQLPMAAV 600 Query: 576 TLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 L+QGVGRLIR DRGVLV+CD RL YG L++LP Sbjct: 601 ALRQGVGRLIRRESDRGVLVVCDVRLRSMGYGRKLLSALP 640 >UniRef50_C8N856 ATP-dependent helicase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N856_9GAMM Length = 662 Score = 426 bits (1094), Expect = e-117, Method: Compositional matrix adjust. Identities = 258/652 (39%), Positives = 349/652 (53%), Gaps = 30/652 (4%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 FA DG LA+A+ ++PR Q+++A AV + L+ EAGTGTGKT+AYL P L + K Sbjct: 8 FAADGALAQAVRDYQPRPGQQELAEAVADNLSDDGILLAEAGTGTGKTFAYLLPLLASGK 67 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 K ++ST ++ LQ+Q++++DLP V K L+ T VALLKGR NYLC Q L Sbjct: 68 KGLVSTATRNLQEQIFTKDLPLVRKVLRSTARVALLKGRRNYLCHHHY-HQYLDSEPHTA 126 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + + + + ++T DGD+ + ED+ +TST +NCLG DC +++CFV +A Sbjct: 127 EEKAWRRAIERFFDKTADGDLVALTEIPEDAPVLARITSTAENCLGRDCAFFEECFVQQA 186 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 R+KA +ADV ++NHHL LAD +K GF E++P+ + DEAH LP A + G LS+ Sbjct: 187 RQKAKEADVTIINHHLLLADFALKSEGFAEILPDIQAFVIDEAHHLPLTAIHFLGDRLSA 246 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEP-----------GYRG 293 RQLL D A E D +L++ L L + +P +R Sbjct: 247 RQLLGFISDGEAAALAEAPDALELRETLRELKLQHSKILLAVRQPTETRLDEEQLFAHRA 306 Query: 294 NLRELLA------------NPQIQRAFLL--LDDTLELCYDVAKLSLGRSALLDAAFERA 339 EL A PQ R LL LD C D+ KL A AA A Sbjct: 307 FWTELQALAALFELLHIQLAPQKARGKLLAHLDGR---CQDLQKLLAAFLAEDRAALPAA 363 Query: 340 TLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATL 399 T + + W + RH+TL P++ A +F +A SW F SATL Sbjct: 364 TEKTGNDAENNDKPPVPRAIWLDVGPRHYTLCSVPVNAAGRFASWIANSNASWAFLSATL 423 Query: 400 SVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPI 459 +VN HF+ LG+ + S+ L SPFD+ QALL LP N L + + P+ Sbjct: 424 AVNGKFDHFSRELGLSEYRSIQLQSPFDFRHQALLYHPPGLPDPNDARYNDALISAILPV 483 Query: 460 IEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATS 519 +E + GR F+L TS+ + R T +L+QG K LL F A+L+ATS Sbjct: 484 LERSRGRAFLLFTSYKALHAAERALRDT-DYHLLVQGRAGKNILLADFRRHERAVLLATS 542 Query: 520 SFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQ 579 SFWEGVDVRGD L V+IDKLPF +P+DP+ +AR +G PF LP A+ITLKQ Sbjct: 543 SFWEGVDVRGDRLVCVVIDKLPFAAPNDPVTRARHRLLEDKGLSPFMHDTLPQAIITLKQ 602 Query: 580 GVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 GVGRLIRD+ D GVLV+ D RL + YG TFL SLPP +TR I RF A Sbjct: 603 GVGRLIRDSGDYGVLVLADPRLTQKNYGQTFLNSLPPMSKTRKIEVIDRFFA 654 >UniRef50_Q1IHL6 Helicase c2 n=3 Tax=Acidobacteria RepID=Q1IHL6_ACIBL Length = 674 Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust. Identities = 243/657 (36%), Positives = 368/657 (56%), Gaps = 33/657 (5%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 F P G LAK+ P ++ R Q QMA AV QA+ + + L+VEAGTGTGKT AYL P +R+ Sbjct: 24 FGPGGVLAKSHPAYEFRRGQLQMAQAVEQALTEKRHLIVEAGTGTGKTLAYLVPVIRSGL 83 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGN-----VALLKGRSNYLCLERLEQQALAG 119 +VIISTG+K LQ+QL+ +D+P + +A+ + V +KGR+NYLC ++L + Sbjct: 84 RVIISTGTKNLQEQLFYKDVPFLERAIFGAESDQKLKVCYMKGRNNYLCRKKLYDLS--- 140 Query: 120 GDLPV----QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 D PV + + +R W T GD + +V E S WP + + D C+GS C Sbjct: 141 -DRPVLNGLEEIDQFRQIREWEAVTTTGDRAELTAVPEASLLWPKLDARADACVGSKCKD 199 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGE----LIPEADVMIFDEAHQLP 231 ++ CF+ + R+ AM++D+++VNHHL+ AD+ +K++ G ++PEA +IFDEAH+L Sbjct: 200 FERCFITEMRRTAMESDIIIVNHHLYFADLAIKQAADGAPDVGILPEAAAVIFDEAHELE 259 Query: 232 DIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFR--LQLGEP 289 D+A YFG S S+ ++ DL +D+ A + + L + + R + +Q F + GE Sbjct: 260 DVAGSYFGVSASNVRVDDLVRDVEFAIKEFHIASPTLLQASQRARERSQLFFSLVPQGEG 319 Query: 290 GYR-GNLRELLANPQIQRAFLLLDDTLELCY-DVAKLSLGRSALLDAAFERATLYRTRLK 347 + N +E L + FL L + L Y ++ L L + A R R +L Sbjct: 320 RFAFENRKEFL--EENGEEFLALQNALGHLYSEIQALKEKPDELFNLA-RRTEELRVQLS 376 Query: 348 RLKEINQPGYSYWYEC---------TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSAT 398 L E N YW E + L TP+ V+ + + + + TSAT Sbjct: 377 FLLESNDKNTVYWVERRGESRRAGRQGHNVFLQATPIDVSAILQRTLFANLNTAVLTSAT 436 Query: 399 LSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRP 458 ++V + RLG++ A L++PS FDY QA+ V ++P + +R+ A +R Sbjct: 437 IAVGGGFQYARGRLGLQDARELVVPSHFDYETQAVFYVPPDMPDPREQLFSRKAADRIRQ 496 Query: 459 IIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVAT 518 ++E GR F L TS+A M D+ ++ + P+L QG+ K LL++F + A+L AT Sbjct: 497 LLEITRGRAFCLFTSYAQMNDVYDRLLGELDYPMLKQGDAPKSALLEEFRTTPGAVLFAT 556 Query: 519 SSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLK 578 SSFW+GVDV+G+ LS VIID+LPF P+DP++ AR+ GG+ F + Q+P AVI LK Sbjct: 557 SSFWQGVDVQGEQLSCVIIDRLPFAVPNDPVVAARIRAIDADGGNAFFDYQVPSAVIALK 616 Query: 579 QGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 QG GRLIR DRGV+ + DNR++ + YG F+ SLP RT DI + F A P + Sbjct: 617 QGFGRLIRSLHDRGVVCLLDNRILKKQYGRVFVESLPKYWRTTDIRKVEEFFAGPEA 673 >UniRef50_A9BWB5 Helicase c2 n=2 Tax=Comamonadaceae RepID=A9BWB5_DELAS Length = 724 Score = 409 bits (1051), Expect = e-112, Method: Compositional matrix adjust. Identities = 272/691 (39%), Positives = 369/691 (53%), Gaps = 92/691 (13%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 FAP G L++A F PRE Q +MA+AV QAIE+ Q LVVEAGTG GKTYAYL PAL + + Sbjct: 12 FAPQGLLSRAEALFLPREGQTRMALAVAQAIEQRQTLVVEAGTGVGKTYAYLVPALLSGQ 71 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQ--QALAGGDL 122 +V++ST ++ALQDQLY+RDLP + AL +A LKGRS YLC+ERLE+ Q Sbjct: 72 RVLVSTATRALQDQLYARDLPRLVAALGMPLRMARLKGRSAYLCMERLERVRQGRTAPQD 131 Query: 123 PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVV 182 P Q+L V L+ W+ T GD+ ++ E S A PLVTST DNCLGSDCP ++DC V Sbjct: 132 P-QVLRSVALVERWARTTRTGDLGELPALDERSPALPLVTSTRDNCLGSDCPHWQDCHVN 190 Query: 183 KARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 AR+ A++ADVVV+NHHL AD+ V+ESG +L+P V++ DEAHQL D Q+ GQSL Sbjct: 191 VARRAALEADVVVINHHLMFADLDVRESGVAQLLPSVGVVVVDEAHQLNDTGVQFAGQSL 250 Query: 243 SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANP 302 S +QL A+D+ A + + + + R+ Q+ ++ RL G+P G L P Sbjct: 251 SGQQLTGYARDVLRAGQELARGMADWMQLSARVEQALRELRLAAGKPPAGGRLPWQGVTP 310 Query: 303 Q---IQRAFLLLDDTLELCYDVAKLSLGRS--ALLDA-------------AFERATLYRT 344 Q QR + A ++LGRS ALL+ FER Sbjct: 311 QGLDAQR------------WRTALVTLGRSLRALLEPLVQLQVSDPELRRLFERGNELLR 358 Query: 345 RLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKE----LMAQKPGS--------- 391 RL W E S+ + +PL++A + L ++ GS Sbjct: 359 RLATFAAAAVQDTVRWLELGSQQMRMLESPLTIAHIMRTRLLGLTQEQEGSEDQEREDAQ 418 Query: 392 ------------------------------WIFTSATLSVNDDLHHFTSRLGIEQAESLL 421 WIFTSATL ++ L FT G+ +A+ L Sbjct: 419 PEPEPQEQEEGAPAPVHEAAGLPRQPSGTAWIFTSATLGDDERLSWFTEPCGLREAQVLR 478 Query: 422 LPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTS----HAMM 477 + SPFDY+RQA L V R Q + ++A + + GR +L T+ HA+ Sbjct: 479 VDSPFDYARQAALYVPRPFAQAGSATHSTEVARLALDAAQRLGGRTLVLTTTLRALHAIG 538 Query: 478 RDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNA------------LLVATSSFWEGV 525 L + L VL+QG+ K L+++F++AG +LVA+++FWEGV Sbjct: 539 DALQQSLGLFGELDVLVQGQAPKLALIERFIAAGEGREGTGASPGRGCILVASATFWEGV 598 Query: 526 DVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLI 585 D+ GD L LV+IDKLPF PDDPL++AR G F + LP+A + LKQG GRLI Sbjct: 599 DLPGDALQLVVIDKLPFPPPDDPLVEARSRSLESVGRQAFADYMLPEAAMALKQGAGRLI 658 Query: 586 RDADDRGVLVICDNRLVMRPYGATFLASLPP 616 R DRGVLV+CD+RL YG A+LPP Sbjct: 659 RRETDRGVLVVCDSRLATMGYGRRLRAALPP 689 >UniRef50_D0J804 Helicase c2 n=4 Tax=Comamonadaceae RepID=D0J804_COMTE Length = 699 Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust. Identities = 263/650 (40%), Positives = 372/650 (57%), Gaps = 43/650 (6%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 FA G L+ A P F PR Q +MA+AV QAIE+G LVVEAGTG GKTYAYL PAL + + Sbjct: 19 FAQQGALSLAEPAFTPRPGQTRMALAVAQAIEEGGVLVVEAGTGVGKTYAYLVPALLSGQ 78 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQ--QALAGGDL 122 +V++ST +KALQDQL++RDLP + L +A LKGRS+YLC ERLE+ Q Sbjct: 79 RVLVSTATKALQDQLFARDLPRLVHGLGLPLRMARLKGRSSYLCTERLERVRQGRTAPQD 138 Query: 123 PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVV 182 P Q+L V + W+ T GD++ ++ E S PLV+ST DNC+GSDCP ++ C V Sbjct: 139 P-QVLRAVADVERWARVTRTGDLAELTALDERSPVMPLVSSTKDNCMGSDCPHWQGCHVN 197 Query: 183 KARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 +AR++A++ADVVVVNHHL AD+ V++SG L+P V++ DEAH+L DI Q+ G++L Sbjct: 198 QARQQALEADVVVVNHHLLFADLDVRDSGMAHLLPNTGVVVIDEAHRLNDIGVQFAGEAL 257 Query: 243 SSRQLLDLAKD---ITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELL 299 SS+QL+ A+D +T + + D L CA L Q+ ++ RLQ G+P G L Sbjct: 258 SSQQLVGYARDALRMTQEHARGMADW--LVLCAT-LEQAMRELRLQAGKPPVGGRLAWQA 314 Query: 300 ANPQ------IQRAFLLLDDTLE-LCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEI 352 PQ + A + L +L L ++ L G A L +ER RL R Sbjct: 315 VTPQGLDAVKWRAALVRLGQSLRALLIPLSSLE-GAGAELQRLYERGAELLARLARFAAP 373 Query: 353 NQPGYSYWYECTSRHFTLALTPLSVA-----------------DKFKELMAQKPGSWIFT 395 W E +++ + +PLS+A D+ +E + + +WIFT Sbjct: 374 ADDECVRWLEVGAQYLRMLESPLSIARIMQQRLLQRSLEDAGTDQGEEPDSSRKKAWIFT 433 Query: 396 SATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAM 455 SATL + L F G+ A+ L + SPFDY RQA + V + ++Q+A + Sbjct: 434 SATLGNDAQLSWFVESCGLRGAQVLQVESPFDYHRQAGVYVPQPFAAAGSAQHSQQVAQL 493 Query: 456 LRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT----LPVLLQGETSKGQLLQQFV--- 508 + + GR +L T+ + ++ R ++ L VL+QGE K L+Q+F+ Sbjct: 494 VLDAAQRIGGRTLVLTTTLKALHAISASLRTSLGLFADLDVLVQGEAPKLALIQRFMAAG 553 Query: 509 --SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD 566 + A+LVA+++FWEGVD+ GD L LV+IDKLPF PDDPL++AR G F Sbjct: 554 AVAGRGAVLVASATFWEGVDLPGDMLQLVVIDKLPFPPPDDPLVEARSRLLESVGRGAFH 613 Query: 567 EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPP 616 + LP+A + LKQG GRLIR DRGVLVICD+RL+ YGA +++LPP Sbjct: 614 DYMLPEAALALKQGAGRLIRSEADRGVLVICDSRLMTMGYGAELMSALPP 663 >UniRef50_A5EVG8 Helicase domain protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVG8_DICNV Length = 645 Score = 401 bits (1031), Expect = e-110, Method: Compositional matrix adjust. Identities = 247/649 (38%), Positives = 352/649 (54%), Gaps = 40/649 (6%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 F+ G L+ A+ G++ R+ Q +A + + IE+ L EAGTG GKT+AYL P L + K Sbjct: 8 FSEQGALSSALKGYQVRKEQVHLAETIARQIERKSVLCAEAGTGIGKTFAYLFPLLLSAK 67 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 K +IST +K LQ+Q++ D+P V K L + +ALLKGR NYLC ER E A P Sbjct: 68 KALISTATKTLQEQIFYHDIPFVQKILGNSRKIALLKGRRNYLCYERYEHLA----HKPP 123 Query: 125 QILSDVI---LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 Q + L+ ++ ++ DGD++ + + E+ V+ T + CL +DCP + CFV Sbjct: 124 QNAQEQKYRQLIDDFAVRSKDGDLAQ-LDIPENHDILRAVSCTAEQCLNADCPFFAQCFV 182 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS 241 KAR+KA DAD++VVNH+L LAD+V+K GF E++PE + I DEAH LP I + G + Sbjct: 183 QKARQKAKDADLIVVNHYLLLADLVLKNDGFAEILPEIETFIIDEAHHLPTITRHFSGIT 242 Query: 242 LSSRQ-----------LLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPG 290 LS RQ +++ A D + R +K Q + + Q + L++ + Sbjct: 243 LSQRQCHLWLKEFDEAVIEHAPD-ALTLRHAIKTAQNVMQQFPSSLQIYDERILEMPDLQ 301 Query: 291 YRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFER----ATLYRTRL 346 + E++A Q+A + L L+ L R+A+L FER A Sbjct: 302 AHHDFWEIIA--AWQQALMKLLSALQP-------QLPRAAVLHT-FERRLETALNSLDEF 351 Query: 347 KRLKEINQPG----YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVN 402 LK+ N+ + W E ++H L P++ A +F + + +W F SATL++N Sbjct: 352 LALKDANESSPETPEAKWVEVRAQHLVLNRVPVNAALQFGTWIERSDAAWCFLSATLTIN 411 Query: 403 DDLHHFTSRLGIEQA-ESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIE 461 HF LG+ + E+L SPFDY +QAL+ LP N P A + PI+ Sbjct: 412 QSFTHFCHELGLNASVETLYCASPFDYPKQALMYQPPQLPNPNHPQYTESFIAAVLPILR 471 Query: 462 ANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSF 521 + GR F+L TS+ ++ +AE+ A + +QG K +LL F NALL+AT+SF Sbjct: 472 RSQGRSFLLFTSYRALK-IAEKLLANEEFALFVQGSAPKTKLLADFCQTPNALLLATASF 530 Query: 522 WEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGV 581 WEGVDVRG L V+IDKLPF +PDDP+ + R +G PF LP AVI+LKQGV Sbjct: 531 WEGVDVRGKQLVCVMIDKLPFAAPDDPVSRERHRLLEEQGLSPFMYDTLPQAVISLKQGV 590 Query: 582 GRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 GRLIRD D GVLVI D RL + YG FL SLP RT + RF Sbjct: 591 GRLIRDQKDYGVLVIGDPRLRQKSYGKIFLESLPRMTRTSKLDIVYRFF 639 >UniRef50_Q0F3T0 ATP-dependent helicase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3T0_9PROT Length = 620 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 227/634 (35%), Positives = 349/634 (55%), Gaps = 30/634 (4%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 ++ DF G L + +PG+ RE Q ++A + I G L+ EA TGTGKT AYL PAL Sbjct: 8 VSRDFERGGLLDEQLPGYGRREEQIKLAGEIAGCIVSGSRLLAEAETGTGKTLAYLIPAL 67 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 R+ KV+IST +++LQDQL RDLP V KAL VALLKGRSNYLC +RL+ ++ Sbjct: 68 RSSDKVLISTHTRSLQDQLVHRDLPAVQKALGAKRRVALLKGRSNYLCPQRLKTH-ISSP 126 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + + ++ + WS +T DGD++ ++T+T D C GS C ++ C Sbjct: 127 QVELWAQKTMLKVLDWSRKTQDGDLAALPFDPFAKGIGAMITATADQCAGSKCAEFEHCP 186 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 ++KAR+KA AD+VV NH L LAD +K FGE++P DV + DEAH LP +A Q+FG Sbjct: 187 LMKARQKAQGADIVVTNHSLLLADAALKSGDFGEVLPAFDVYVLDEAHSLPQLAGQHFGI 246 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRE--- 297 L+ + D+ +L+ D EP + ++ E Sbjct: 247 QLTRMNFIQWLNDMQA----------ELEAMGD--------------EPALKKDIVEQGR 282 Query: 298 LLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGY 357 ++ ++ L++ ++ L RS L ERA + +K+ G+ Sbjct: 283 VVLEAWLESGLEALEEAWGDMLKLSDLRRERSEPLTRLAERAEQLAEEIAMVKKPGD-GF 341 Query: 358 SYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA 417 W E + P+ + + + ++I SATL V+ + +RLG+ A Sbjct: 342 VGWSEGEGELTRYTVAPVETGPVLAKHLWSRQAAFILLSATLRVSGSFDYARNRLGLADA 401 Query: 418 ESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 E PSPFDY++QA++ + R++P + PG+ + + ++ A+ GR F+L T+ +M+ Sbjct: 402 EECFHPSPFDYAQQAMIYLPRHMPDSRSPGAVATMTDEIETLLRASRGRAFVLFTAWSML 461 Query: 478 RDLAEQFRATMTLPVLLQGET-SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 + +A + + VL+QGE+ S+ +L F + +++L T SFWEGVDV G++LS+VI Sbjct: 462 KQVAPELARRLPWDVLIQGESGSRDAILDAFRADTHSVLCGTRSFWEGVDVPGESLSMVI 521 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 IDK+PF P+DPLL+AR+ C +GG F ++QLP+A+ TL+QG GRLIR DDRGV+ + Sbjct: 522 IDKMPFAPPNDPLLQARIRRCEEQGGSGFRDIQLPEAIATLRQGAGRLIRSEDDRGVMAL 581 Query: 597 CDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 D+RL + YG + +LPPAP D+A F Sbjct: 582 LDSRLYHKAYGREAVHNLPPAPIRDDLADVRWFF 615 >UniRef50_Q1NJC5 Helicase c2 n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NJC5_9DELT Length = 698 Score = 397 bits (1019), Expect = e-109, Method: Compositional matrix adjust. Identities = 241/678 (35%), Positives = 358/678 (52%), Gaps = 62/678 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAI-----------EKGQP--------- 40 M + FA G LA+ +P ++PRE Q MA AV + E P Sbjct: 33 MGEIFAVGGLLARYLPDYEPREGQLSMAQAVAATLDPETAEELPPPETSGPERAPHPTPR 92 Query: 41 LVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALL 100 L+VEAGTGTGKT AYL PA+ + ++V++ST + LQ+Q+ ++++P + + L + Sbjct: 93 LLVEAGTGTGKTLAYLVPAVLSGRRVVVSTNTINLQEQILAKEIPFIQRYLAPWLQAMCV 152 Query: 101 KGRSNYLCLERLEQ--------QALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVA 152 KGR NYLCL R Q Q G Q+ L W +T GD + +A Sbjct: 153 KGRGNYLCLRRWHQFLAKHRQGQLFTGNQGGAQLEQ----LAGWVEETDSGDKAELSELA 208 Query: 153 EDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGF 212 +DS W + + +CLGS CP +CF+ R+KA A +++VNHHLF +D+ V+ G Sbjct: 209 DDSPLWASLNAAGGHCLGSSCPHGAECFITTLRRKAARAHLLIVNHHLFFSDLAVRRFGH 268 Query: 213 GELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCA 272 E++P + ++FDEAH L +IA+++FG SLS QLLDL +D+ L++ + + Sbjct: 269 AEVLPRYEAVVFDEAHHLENIATRHFGLSLSHYQLLDLVRDLESMAEERLRENDRARLLQ 328 Query: 273 DRLAQSAQDFRLQLGEPGYRGN--LRELLANPQIQRAFL--LLDDTLELCYDVAKLSLGR 328 A + RL P RG L LLA L L D L D+ L+ Sbjct: 329 HARALGVEADRLNHFFPASRGRFPLPPLLAEHPDWPGLLEDLRGDFRALAGDLEGLA--- 385 Query: 329 SALLDAAFERATLYRTRLKRLKE-------INQPGYS------YWYECTSRHFTLALTPL 375 + A ++ L+R++E I QP YWYE + + +P+ Sbjct: 386 --------QLAEIWNPPLRRVRELADTLEAICQPPEDDAGNDIYWYERLEKTVFIGRSPI 437 Query: 376 SVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYSRQALL 434 +A +E + + + +FTSATL D + +RLG+ + L L +PFDY+ + LL Sbjct: 438 DIAPHLREHLHNQVKATVFTSATLRTGKDFRYVKNRLGLPADSPELALETPFDYAGRTLL 497 Query: 435 CV-LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVL 493 V + +P G ++R +++ + GR +L TS MR A + T+ P+L Sbjct: 498 YVPSQEMPPPGASGHPEASRRLMRELVQCSRGRALLLFTSLGAMRQAAAELAGTLPYPLL 557 Query: 494 LQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKAR 553 +QG+ + LL+QF ++L+A +SFWEGVDV G++LS VIIDKLPF P DP++ AR Sbjct: 558 IQGDAPRQLLLEQFRRRTGSVLLAVASFWEGVDVPGESLSCVIIDKLPFEVPSDPVIMAR 617 Query: 554 MEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLAS 613 +E + GG+PF + Q+P AV+ L+QGVGRL+R DRGVL I D RL + YG FL S Sbjct: 618 VEKIKKDGGNPFFDFQVPRAVLMLRQGVGRLLRSTADRGVLAILDGRLFSKSYGRIFLQS 677 Query: 614 LPPAPRTRDIARAVRFLA 631 LPP+P R++AR F A Sbjct: 678 LPPSPVCRELARVREFFA 695 >UniRef50_D0LRT5 Helicase c2 n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRT5_HALO1 Length = 729 Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust. Identities = 242/677 (35%), Positives = 359/677 (53%), Gaps = 72/677 (10%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 P G L P ++ R QR MA AV +A+ L+VEAGTGTGKT AYL PAL + K Sbjct: 17 LGPSGILRACTPHYEDRPEQRHMAHAVAEALAHQGALLVEAGTGTGKTLAYLVPALLSGK 76 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 +V+ISTG++ALQDQ+ D+P + + L LKG SNY+C+ +L + P Sbjct: 77 RVVISTGTRALQDQITRNDIPLLEEILPRQFTAVTLKGVSNYVCVRKLWDVSARLAMAP- 135 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + D + W+ + GD + +VA+D+ W +T+T D +G CP ++ CF+ +A Sbjct: 136 EARRDYQTVAEWARDSPTGDRAELTAVADDAPIWAALTNTPDTRIGPRCPFFEQCFITRA 195 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFG-ELIPEADVMIFDEAHQLPDIASQYFGQSLS 243 R++A AD+++VNHHLF AD+ ++ S G ++PE + ++FDEAHQL D+ +++FG +S Sbjct: 196 RRRAEKADLIIVNHHLFFADLSLRSSYPGARVLPEYEAVVFDEAHQLEDVMTEHFGVQVS 255 Query: 244 SRQLLDLAKDI--TIAYRTE--LKDTQQLQKCAD---------------------RLAQS 278 + +L LA+D + A R + Q +K +D L + Sbjct: 256 TVRLAQLARDARHSSAGRNGPLFPNAQSSEKASDDDDSPKPSTRPMETSTERIIAHLERC 315 Query: 279 AQDFRLQLGEPGYRGNLRE--------------LLANPQIQRAFLLLDDTL--------- 315 A+ F + + R LRE L A+ Q A+ LD L Sbjct: 316 AEGFFISV-----RAALRESPAGDGGRVPLDDSLFADSDRQEAWFRLDSALDELAAHATL 370 Query: 316 ---ELCYDVAK---LSLG---------RSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 EL D A+ ++G R+ L A RA + R L L E ++ + YW Sbjct: 371 RADELASDSAEAAAYAIGEDNPGNADERAEALAAVAVRAEMLRGDLALLAERSERAFVYW 430 Query: 361 YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI--EQAE 418 E + L P+ V+ ++ + + IFTSATL + RLG+ E A+ Sbjct: 431 GEARATSVGLCAAPVDVSAYLRKYLLPIAPAAIFTSATLRAAGSFDYLRQRLGLDSEIAD 490 Query: 419 SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 L +PSPFDY+RQA+L + R+LP G A + + GR F+L TSH +R Sbjct: 491 ELAVPSPFDYARQAILYLPRDLPDPRDAGFTAAACARVVELCAITGGRAFVLFTSHRALR 550 Query: 479 DLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIID 538 + A + T+ VL+QG+ + L++QF + A+L+ T +FWEGVDV GD LSLVI+D Sbjct: 551 EAARRLLGTLPHEVLVQGQMPRAALVEQFRARPGAVLLGTGTFWEGVDVPGDALSLVIVD 610 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 KLPF DPL++AR++ RGG PF+ Q+P A + LKQG GRLIR +DDRG++ + D Sbjct: 611 KLPFAPHTDPLVRARVQRIESRGGAPFEGYQVPQAALALKQGFGRLIRRSDDRGIVAVLD 670 Query: 599 NRLVMRPYGATFLASLP 615 R+V R YG FL +LP Sbjct: 671 PRIVTRRYGRAFLDTLP 687 >UniRef50_Q6AMF2 Related to ATP-dependent helicase n=2 Tax=Proteobacteria RepID=Q6AMF2_DESPS Length = 776 Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust. Identities = 239/665 (35%), Positives = 366/665 (55%), Gaps = 47/665 (7%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAI-EKGQP-----------LVVEAGTG 48 + D F +G+LA I ++PR Q++MA AV++++ + P LVVEA TG Sbjct: 120 LEDFFGENGRLAGLIDHYQPRSGQQEMAQAVSRSLMDSNDPDPHAVSAPPRVLVVEAETG 179 Query: 49 TGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLC 108 GKT AYL PA+ + K+V++ST ++ LQDQ+ +++P + K + +KGR NYLC Sbjct: 180 IGKTLAYLLPAVISGKRVVVSTATRNLQDQIIHKEIPLLEKMFGGRVSAQCVKGRQNYLC 239 Query: 109 LERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC 168 L + Q + L + D + W TV GD + +A+D+ W ++S +D C Sbjct: 240 LYKWYQHR-SSAQLSLIAQDDEDKIEQWLASTVTGDRAELHWLADDASLWHKISSQSDQC 298 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAH 228 LGS+CP ++CF+ + R++A A +++VNHHLF +D+ +K+ G+GE++P +IFDEAH Sbjct: 299 LGSECPEQENCFISRLRRRAAAARILIVNHHLFFSDLALKKEGYGEILPRYQAVIFDEAH 358 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE 288 L DIA+ +F +S SS QL D+ D L D + L R++L Sbjct: 359 HLEDIATTFFAKSFSSYQLRDILSDAE-----RLGDKILVSDEHKNLLSRLSGMRVRLNA 413 Query: 289 -----PGYRGN--LRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATL 341 P RG L+EL+ Q A+ + L +AKL + AL D F + Sbjct: 414 FMHVFPKKRGKTALKELVTEYG-QEAWQ--QEVELLATGIAKLIV---ALTDLHF-KGEG 466 Query: 342 YRTRLKRLKEIN-------------QPGYSYWYECTSRHFTLALTPLSVADKFKELMAQK 388 ++T ++R +E + Y +W+E + L++TP+SVA + E + Sbjct: 467 WQTLVRRCQECHDNLRLTGLARDTTSSNYVHWFEHREKSIVLSVTPISVAKELNEFLYAG 526 Query: 389 PGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYSRQALLCVLRN-LPQTNQP 446 S I TSATLS+ + + RLG+ + L SPF Y QALL + P+TN P Sbjct: 527 VESTIMTSATLSIGEKFDYLRERLGLPADTKYLRFASPFAYKEQALLYIPEGGFPETNAP 586 Query: 447 GSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQ 506 ++ + I+E + GR +L TS + M A + +L+QG S+ LL++ Sbjct: 587 DYGQKSCERILQILEQSRGRALILFTSFSAMERAATWLTDKIDYRMLVQGRHSRKHLLEE 646 Query: 507 FVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD 566 F + +++L+A +SFWEG+DV G+ LS VIIDKLPF P DP+++ARME + GG+PF Sbjct: 647 FKADRDSVLLAVASFWEGIDVAGEALSCVIIDKLPFEVPTDPVIQARMEYIKAAGGNPFM 706 Query: 567 EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARA 626 + Q+P AV+TL+QGVGRL+R DRG++ I D RL + YG FL SLPPAP TR + Sbjct: 707 DFQVPRAVLTLRQGVGRLMRSDRDRGLITILDIRLFSKFYGKRFLRSLPPAPVTRSLDEV 766 Query: 627 VRFLA 631 +F + Sbjct: 767 KKFFS 771 >UniRef50_Q1CXN9 Putative ATP-dependent helicase n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CXN9_MYXXD Length = 662 Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust. Identities = 240/650 (36%), Positives = 355/650 (54%), Gaps = 31/650 (4%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 P G L A+P ++ R Q QMA AV +A + L+ EAGTGTGKT AYL PAL + + Sbjct: 15 LGPGGALEVALPAYEHRPEQLQMARAVERAFAEHSYLLAEAGTGTGKTLAYLVPALLSGR 74 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 +V++ST +K LQDQ++ +DLP + + + A LKGRSNYLCL R + + A Sbjct: 75 RVVVSTATKTLQDQIFFKDLPLMREKMGLRFEAAYLKGRSNYLCLHRYDAFSKAPQFGSR 134 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + L++W+ +T GD S + + E AW +++T++ C+G+ CP Y+ CFV + Sbjct: 135 EESRYWPKLKAWAEETDTGDRSE-LDLPESFSAWSRLSTTSETCVGTRCPQYETCFVTRM 193 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESG--FGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 RK+A AD++VVNHHLF AD+ ++ SG ++P + +IFDEAH L D AS +FG S+ Sbjct: 194 RKRAEQADLLVVNHHLFFADLALRSSGKRTEGVLPWYEAVIFDEAHALEDAASGHFGCSV 253 Query: 243 SSRQLLDLAKDITIAYRTE-------LKDTQQLQKCADRL-AQSAQDFRLQLGEP--GYR 292 S+ +L +LA+D + + + +L+ AD L AQ+ + L E R Sbjct: 254 SNYRLEELARDAVASLKEDDARHAMLRALAARLRAGADALFAQAPRALGLSGHEASVALR 313 Query: 293 GNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLG-RSALLDAAFERATLYRTRLKRLKE 351 + L+ P L+ + ++ ++G R L A R+ +L L++ Sbjct: 314 AEVMAKLSTP--------LEGVRDALAALSAFTVGEREPELAAITRRSDEMEEQLSFLEK 365 Query: 352 INQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSR 411 + YW E + L +P+ VA + +E M + ++TSATL+ + F +R Sbjct: 366 AESSDHVYWAEQRGKGLFLRASPIDVAKELRERMYGALDTVVYTSATLAADSRFDFFANR 425 Query: 412 LG--------IEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEAN 463 +G + + +L +PSPFDY QA L + +LP + PG + A + + E Sbjct: 426 MGLYGEDGQPVTRVRTLAVPSPFDYPSQAALYLPTHLPDPSAPGFIEEAAEEIERLCEVT 485 Query: 464 NGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWE 523 GR F+L TS M E + LLQGE K QLL+ F ++L A SFWE Sbjct: 486 GGRAFVLFTSLRNMVRAYELVAPRLPYQSLLQGERPKQQLLEAFRET-PSVLFAAHSFWE 544 Query: 524 GVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGR 583 GVDV GD LSLVIID+LPF SP DPL+ AR+ + RG +PF++ QLP A + L+QG GR Sbjct: 545 GVDVPGDALSLVIIDRLPFASPGDPLVAARINQLQQRGEEPFEQYQLPHAALALRQGFGR 604 Query: 584 LIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIP 633 LIR DRG++ + D R+V + YG FL SLPPA R D+ R+ P Sbjct: 605 LIRTQSDRGIVAMLDRRIVTKAYGRVFLDSLPPARRMEDVVSLSRWFNGP 654 >UniRef50_C8R1Z3 Helicase c2 n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1Z3_9DELT Length = 707 Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust. Identities = 252/708 (35%), Positives = 376/708 (53%), Gaps = 82/708 (11%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQP-----------------LVV 43 M + FA G L++ +PGF+PRE Q MA AV + +P ++ Sbjct: 1 MEEIFAAGGLLSRELPGFEPREGQLAMARAVAATLNGNEPSPGGAPEQPAAAHGGRLVLA 60 Query: 44 EAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGR 103 EAGTGTGKT AYL PA+ + +KV+IST + LQ+Q+ ++++P + + L +KGR Sbjct: 61 EAGTGTGKTLAYLVPAVLSGRKVVISTNTINLQEQILAKEIPFIRRHLAPGLKALCVKGR 120 Query: 104 SNYLCLERLEQ-QALAGGDLPVQILSD-----VILLRSWSNQTVDGDISTCVSVAEDSQA 157 NYLCL R Q Q G L + +SD + + +W N+T GD +A+DS Sbjct: 121 QNYLCLYRWHQLQINPQGRLFSKGVSDQDEQNLETIAAWLNETGTGDRGELRGLADDSPL 180 Query: 158 WPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIP 217 W +++ +CLGS CP DCF+ + R++A + +++VNHHLF +D+ V+ G E++P Sbjct: 181 WAGISAAAGHCLGSSCPHGADCFITRLRQRAARSQLLIVNHHLFFSDLAVRRFGHAEVLP 240 Query: 218 EADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTEL--KDTQQLQKCADRL 275 + +IFDEAH L +IA+++FG +LS Q++DL +D+ L +D + + L Sbjct: 241 RYEAVIFDEAHHLENIATRHFGLALSHYQIIDLVRDLEGMAEARLRERDRAGVVQAVRAL 300 Query: 276 AQSAQDFRLQLGEPGYRGN--LRELL-ANPQ-------IQRAFLLLDDTLEL---CYDVA 322 A A F P RG LREL+ A P+ ++ AF + LE C ++ Sbjct: 301 AAEASLFLDFF--PARRGRFPLRELIAAEPRWPELCSTLETAFAAVIRPLEKLAGCEEIW 358 Query: 323 KLSLGRSALLDAAFER--------------------------------ATLYRTRLKRLK 350 L R L A F+ AT T + Sbjct: 359 GPVLRRCQDLLATFKTITSPPQLAVPSVGAAPGGHDAMPQPPRDADGLATTAETPGRPSP 418 Query: 351 EINQPGYSYWYECTSRHFTLAL--TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHF 408 S Y R T+ L +P+ VA +E + ++ + +FTSATL +D + Sbjct: 419 PAPVAADSAIYWYERREKTVQLAVSPIDVAGHLQEHLYRQVKAAVFTSATLRTGNDFRYV 478 Query: 409 TSRLGI-EQAESLLLPSPFDYSRQALLCVL-RNLPQTNQ---PGSARQLAAMLRPIIEAN 463 +RLG+ +L L +PFDY+ + LL V ++ P N+ P ARQL +R II + Sbjct: 479 KARLGLPADCPALDLATPFDYAGRTLLYVPDQDFPAPNEAAYPARARQL---MREIIGHS 535 Query: 464 NGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWE 523 GR +L TS M A + + PVL+QGE + LL++F S ++L+A +SFWE Sbjct: 536 RGRALLLFTSVNAMHQAAAELAGKVPYPVLVQGEAPRSALLEEFRSRTRSVLLAVASFWE 595 Query: 524 GVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGR 583 GVDV G++LS VIIDKLPF P DP++ AR++ R GG+PF + Q+P AV+TL+QGVGR Sbjct: 596 GVDVPGESLSCVIIDKLPFEVPSDPVIMARVDKIRAEGGNPFFDFQVPRAVLTLRQGVGR 655 Query: 584 LIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 L+R D+GVL I D RL + YG TFL SLPP+P +R++A +F + Sbjct: 656 LLRSNADQGVLAILDVRLFSKGYGRTFLKSLPPSPLSRELAAVKKFFS 703 >UniRef50_A1W6Z0 Helicase c2 n=5 Tax=Comamonadaceae RepID=A1W6Z0_ACISJ Length = 688 Score = 377 bits (968), Expect = e-103, Method: Compositional matrix adjust. Identities = 253/667 (37%), Positives = 348/667 (52%), Gaps = 66/667 (9%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 FAPDG LA+ P + R Q MA+AV QAI + LVVEAGTG GKT+AYL PAL + + Sbjct: 11 FAPDGPLARVRPHLRSRPGQAAMALAVAQAINARESLVVEAGTGIGKTFAYLVPALLSGE 70 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 +V+IST +K LQDQL +RDLP + +AL VA LKGR+NYLCL RLEQ G Sbjct: 71 RVLISTATKTLQDQLLTRDLPLLQQALALPLRVAALKGRANYLCLYRLEQARRDGEGHDE 130 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + D+ + W+ T GD++ + E S AW VTST DNCLGS CP + C V +A Sbjct: 131 AVAHDLACVERWAQSTRSGDLAEVPGLDEYSAAWRQVTSTVDNCLGSMCPRLRQCHVYRA 190 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 R A ADV+++NHHLF AD+ + +G +L+P+ V++FDEAH+L +IA+Q+ G +S+ Sbjct: 191 RHDAQAADVLIINHHLFFADLGAQGAGAAQLLPDTGVVVFDEAHRLAEIAAQFLGTHVST 250 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPG-----------YRG 293 QLL L +D+ A + Q L Q A RL + PG + G Sbjct: 251 SQLLQLGQDVVAAGARHARGAADWQGLLQHLRQCAHALRLAVA-PGEDADAAGSRIAWTG 309 Query: 294 NLRELLANPQIQRAFL------------LLDDTLELCYDVAKLSLGRSALLDAAFERATL 341 E L +P L LD + D+A L ALL+ Sbjct: 310 VTPEAL-DPSAWDGALEGAVAALRAVLAALDGVAQHAPDLAHLHSRTVALLE-------- 360 Query: 342 YRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELM---------------- 385 R+ G W E ++ + TPL VA + L Sbjct: 361 ---RVLHFCSEADAGTVRWVE-SAGALRMVETPLDVAGALRTLWKGKPPTQGAWDESDEP 416 Query: 386 --AQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQT 443 A P SWI+TSATL DL FT G+E A +L +PSPFDY+RQA L V LP Sbjct: 417 PAASAPRSWIYTSATLGDGKDLRWFTDACGLEGARTLQVPSPFDYARQAALYVPPALPLP 476 Query: 444 NQPGSARQLAAMLRPIIEANNGRCFMLCTS----HAMMRDLAEQFRATMTLPVLLQGETS 499 + G + QLA + + G +L TS + +L +F + VL+QG S Sbjct: 477 SDAGHSVQLARWVGDAVARLGGHTLVLTTSLRALAVIADELCRRFAPGGGIEVLVQGHAS 536 Query: 500 KGQLLQQFVSAGNA-------LLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKA 552 + +++++F + +A +LV +SFWEG+DV G+ L +V+IDKLPF +P DP +A Sbjct: 537 RSRMVERFRAQLDASGRPAGHVLVGAASFWEGIDVPGEALQMVVIDKLPFPAPGDPWEQA 596 Query: 553 RMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLA 612 + +GG+ F LP A + LKQG GRLIR+ +D G+LVI D RL+ + YG L Sbjct: 597 QARRLADQGGNVFRRHALPSAAVALKQGAGRLIRNENDHGILVIADTRLLHKGYGKPLLR 656 Query: 613 SLPPAPR 619 +L P R Sbjct: 657 ALAPMRR 663 >UniRef50_A0LLQ3 Helicase c2 n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLQ3_SYNFM Length = 646 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 231/628 (36%), Positives = 334/628 (53%), Gaps = 17/628 (2%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 M F PDG LA+ + F+ R Q +MA AV +A+ PLVVEAGTGTGKT+AYL PA+ Sbjct: 1 MRRYFGPDGLLAENVTHFEFRPSQLEMAEAVLEALGARSPLVVEAGTGTGKTWAYLVPAI 60 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE----QQA 116 + K+ ++STG+K LQDQ+ +D+P + + + LKGR NYLC R + Q Sbjct: 61 LSGKRTVVSTGTKTLQDQILDQDIPFLKRTVYPKLRAVCLKGRGNYLCHRRFKDFSYQPT 120 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 L D ++ S + W+ +T GD + + + W V S ++CLG C Sbjct: 121 LWNKD-EAKLWSR---FQKWATRTRTGDRAEISWLPDQFHTWNEVCSAGEHCLGQQCSDV 176 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 + CFV + R +A A +VVVNHHLF AD+ +++ ++PE D +IFDEAHQL D+ Q Sbjct: 177 QRCFVTRLRAEAAQAHLVVVNHHLFFADLALRDKADTGVLPEYDAVIFDEAHQLEDVMGQ 236 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGY--RGN 294 YFG +S L++L + + ++ E + + A R+ Q + L + RG+ Sbjct: 237 YFGIQFNSYGLMELTRVLQREFKKETGASHRFHD-ARRIVQQLEVLNRLLHRHLFEVRGS 295 Query: 295 L-RELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFE----RATLYRTRLKRL 349 R L ++ + F+ + L D + + L +FE RA+ ++ L Sbjct: 296 QGRFPLDMSRMGKNFVQSCNQLIHALDELAPMIAPAEDLPLSFEAYHRRASDLSGAVRML 355 Query: 350 KEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFT 409 YWYE L TP+ V F+ + I TSATLSV Sbjct: 356 LAQEDESLVYWYEVGQNALFLNATPIEVCSIFRRRVLTPNRPVILTSATLSVAGSFDFVR 415 Query: 410 SRLGIE-QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCF 468 LGI ++S+ LPSPF Y+ Q +L + R P N+ RQ+A I+ GR Sbjct: 416 QSLGIAPDSKSIRLPSPFAYAEQTMLYIPRRFPAPNEHDFCRQIAEQSVEILLKTRGRAL 475 Query: 469 MLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 L TS+ M ++ + R + P+L+QG+ K LL +F + ++L ATSSF +G+DV Sbjct: 476 FLFTSYRNMNEVHQLLRDRLPYPILVQGQKPKRALLAEFKESIGSVLFATSSFRQGIDVP 535 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 G+ LS ++IDKLPF PDDPL ARM+ +G F Q+P AVI LKQGVGRLIR + Sbjct: 536 GEALSCLLIDKLPFEVPDDPLAAARMDFITRQGKSSFFGYQVPRAVIQLKQGVGRLIRSS 595 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPP 616 DRG++VI D RL+ + YG FL SLPP Sbjct: 596 SDRGLIVIFDVRLLQKNYGQIFLKSLPP 623 >UniRef50_B6BV17 Helicase c2 n=1 Tax=beta proteobacterium KB13 RepID=B6BV17_9PROT Length = 640 Score = 368 bits (944), Expect = e-100, Method: Compositional matrix adjust. Identities = 218/633 (34%), Positives = 338/633 (53%), Gaps = 15/633 (2%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 F G LA + ++ R+ Q QMA + +++ + +V+EAGTG GKT YL P +R K Sbjct: 12 FDEKGPLASHLSNYQKRDGQVQMAQFIDESVTLKKTVVIEAGTGIGKTLGYLLPLVRQNK 71 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA-LAGGDLP 123 K+IIST +K LQ+QL +D P + KALK NV++LKGRSNYLC R+ + + Sbjct: 72 KIIISTATKNLQEQLLEKDFPILQKALKLNFNVSILKGRSNYLCHHRINNHSKMFFSKAD 131 Query: 124 VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVK 183 I SDV L +N GD++ + VTST++NCL DC DCFV K Sbjct: 132 ASIFSDVEGLLKKTNT---GDVAELKKNFSGNITHA-VTSTSENCLFGDCKFSNDCFVNK 187 Query: 184 ARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLS 243 AR++A A+V+VVNHHLF +D + L+P++DV++FDEAH L D+A Y + S Sbjct: 188 ARRRAHSAEVIVVNHHLFFSDFFNENDDANNLLPKSDVIVFDEAHNLIDLAMLYSSKVFS 247 Query: 244 SRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQS-AQDFRLQLGEPGYRGNLRELLANP 302 S +L + D+ + + + +R S +Q L EP + +L +L Sbjct: 248 SLKLNRVLDDLINHLKNSVIGLENFSMIFNRYNFSISQLLDLVKDEPQ-KISLYKLSQLT 306 Query: 303 QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYE 362 + + + + LE + K + +DA+ + + LK + ++ + W E Sbjct: 307 TFKDHLIEIMNNLEELINAIKEPGFINKDIDASIKELNNFIELLKNIINPSEKKNALWLE 366 Query: 363 CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLL 422 + ++ +TP+ V F + A S +FTSAT++ N++ +F G++ E+ + Sbjct: 367 KFNNSISIHITPVDVKGIFSKTTASN-DSMVFTSATMTTNNNFDYFKDLTGLKDIETRVF 425 Query: 423 PSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 SPF+Y + ALL + LP N+ L P I+ N GR L TS + +A Sbjct: 426 ESPFNYEKNALLHIPMGLPNPNEKDFFSSLVDYAYPAIKLNKGRTLFLTTSLNGVEQVAN 485 Query: 483 QF-----RATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 QF R TL +L QG L+++F ++ N +L+ + SFWEG+D+ GD L+L+II Sbjct: 486 QFEFINNRNADTLNILRQGMLPNQLLIEEFKNSQNCVLIGSFSFWEGIDLIGDNLTLLII 545 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 DKLPF SPDDP++ A++ L D F + Q+P + +KQG+GRLIR+ D+GV ++ Sbjct: 546 DKLPFKSPDDPIVDAKIN--LLNEKDFFMKSQIPMTTLLMKQGMGRLIRNFSDKGVAILG 603 Query: 598 DNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 DNR+ + YG L SLPP D + + F+ Sbjct: 604 DNRIQKKYYGKQILKSLPPFQLVEDYNQVLNFI 636 >UniRef50_A9GFB8 ATP-dependent helicase n=2 Tax=Myxococcales RepID=A9GFB8_SORC5 Length = 697 Score = 362 bits (929), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 239/676 (35%), Positives = 348/676 (51%), Gaps = 70/676 (10%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 P G A+ + G++ R+ Q MA AV +A+ + + L+ EAGTGTGKT AYL PA+ + + Sbjct: 10 LGPSGPFARGLDGYEDRQGQVAMASAVERALAEDRILLCEAGTGTGKTLAYLVPAILSGR 69 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQ--------QA 116 KV++ST +KAL+DQ+Y++DLP V++ L+ AL+KG NYLCL R + Sbjct: 70 KVVVSTATKALEDQIYTKDLPLVAEHLRLDPRAALVKGLGNYLCLRRFSELRTSPGAGAG 129 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 +AG LP L+ +W+ +T GD++ +AE W V S+++ LG+ C + Sbjct: 130 IAGRSLP--------LIEAWAQETEMGDVAELAHLAEGDPLWREVASSSETRLGASCEYF 181 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGF------GELIPEADVMIFDEAHQL 230 + CFV + ++ + A ++VVNHHLF AD+ +K +G +P D +IFDEAHQL Sbjct: 182 ERCFVTRMKRDSEAARLLVVNHHLFFADLALKMAGARRGFAGAGALPPYDAVIFDEAHQL 241 Query: 231 PDIASQYFGQSLSSRQLLDLAKDITIAY-RTELKD-----------TQQLQKCADRLAQS 278 DIA+ +FG +S ++ + +D A+ + L D T +++ AD L Sbjct: 242 EDIATGFFGVRVSRARVDSMLRDADRAFIASGLADRILGRGEGTAITAVVRESADALFDR 301 Query: 279 AQDFRLQLGEPGYRGNLRELLA----NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA 334 G RG R LA + ++ A+ LDD LE A + S + Sbjct: 302 LASLGGAAGGGD-RGEARSPLARDAWSGELLDAYHRLDDHLEALAAYASANA-ISEAVQL 359 Query: 335 AFERATLYRTRLKRLKE--INQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSW 392 RA R R+ + NQ W E R + +P+ + D +E + ++ G+ Sbjct: 360 VGNRAAQLRDDAARIVDPATNQ---VTWVEVRGRAVSFGASPVDLGDMLREHVFERIGAV 416 Query: 393 IFTSATL----SVNDDLHHFTSRLGIEQ-----AESLLLPSPFDYSRQALLCVLRNLPQT 443 + TSATL S SR+G+++ + L +PSPFDY ALL R+LP+ Sbjct: 417 VLTSATLTTGGSAGAGFRFLRSRMGLDEDVSVPVDELEVPSPFDYPTAALLYTPRDLPEA 476 Query: 444 NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT-------------- 489 + A +I G F+LCTS M LA R + Sbjct: 477 TDAAFVERAADRAAELIGITGGGAFLLCTSIRAMNALAAALRVRLGRAAAVARADGGAPG 536 Query: 490 --LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 P+L+QG+ KG LL++F + +A+LVAT SFWEGVDV G+ L LVII+KLPF P D Sbjct: 537 RQAPLLVQGDAPKGALLRRFRAERHAVLVATMSFWEGVDVPGEALRLVIIEKLPFAVPTD 596 Query: 548 PLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 P++ AR GG+PF +P A ITLKQG GRLIR DRG++ I D R+ R YG Sbjct: 597 PVVAARCTAIEQGGGNPFIAYSVPQAAITLKQGFGRLIRARTDRGIVAILDRRIRTRGYG 656 Query: 608 ATFLASLPPAPRTRDI 623 L SLP A RT I Sbjct: 657 RVLLDSLPDARRTDRI 672 >UniRef50_A7HIV0 Helicase c2 n=4 Tax=Anaeromyxobacter RepID=A7HIV0_ANADF Length = 635 Score = 362 bits (928), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 221/620 (35%), Positives = 332/620 (53%), Gaps = 40/620 (6%) Query: 41 LVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALL 100 LV EAGTGTGKT AYL PA + ++VI+ST +K LQ+Q++ +D+P + + A L Sbjct: 7 LVAEAGTGTGKTLAYLVPAALSGRRVIVSTATKTLQEQIWGKDIPLLRERCGVEFAAAYL 66 Query: 101 KGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL 160 KGRSNY CL R + A A + + + +W+ T GD S + + + W Sbjct: 67 KGRSNYFCLARGAEFARAPTFAAREEAALWPRIEAWARATETGDRSE-IDLPDQFHTWKD 125 Query: 161 VTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG-ELIPEA 219 +++T + C G +C Y+DCFV +AR A +DV++VNHHLF AD+ ++ S G E++PE Sbjct: 126 LSATAETCAGRECERYEDCFVTRARALAGQSDVLLVNHHLFFADLAMRTSRAGVEILPEY 185 Query: 220 DVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI--TIAYRTEL-----KDTQQLQKCA 272 DV++FDEAH + ++A++YFG +SS ++ +L +D + R +L + T +L++ Sbjct: 186 DVVVFDEAHAIEEVATEYFGLQISSYRVEELGRDALRAVGDRPDLASMMREATGELRRAG 245 Query: 273 DRLAQSAQD-----------------------FRLQLGEPGYRGNLRELLANPQIQRAFL 309 +R Q+ D R + + R L + P +R Sbjct: 246 ERFFQALADGLHASGAGAARGWGARAGGRGRGPRRREEDESVRAPLTSEVLEP-CERDQA 304 Query: 310 LLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFT 369 LD LE ++ L+ + L RA R L + + +P Y+ E R Sbjct: 305 RLDAALEALREL--LADAEAPPLAQIARRAGELRVELAAVTAMKEPSRVYFAEVRGRGVF 362 Query: 370 LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE---QAESLLLPSPF 426 L P+ VA++ + + ++ + IFTSATL+ +F ++G+ + P PF Sbjct: 363 LRAAPIDVAEELQARLYRRTDTVIFTSATLAAQGRFDYFRRQVGLAPEFDVDEARFPGPF 422 Query: 427 DYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA 486 D+ RQA + +P+ N PG A +R + E GR F+LCTS+ M L R Sbjct: 423 DFPRQAAIVTPPTVPEPNAPGFLDAAAGTIRALAEVTGGRAFVLCTSNRNMHALHGALR- 481 Query: 487 TMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPD 546 + VLLQGE K +LL+ F A ++L AT+SFWEGVDV GD LSLV+ID+LPF P Sbjct: 482 DLPYQVLLQGERPKARLLEAF-RAEPSVLFATASFWEGVDVPGDALSLVVIDRLPFAPPG 540 Query: 547 DPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPY 606 DP++ AR+ G D F E+Q+P A + L+QG GRL+R DRG++ I D RLV + Y Sbjct: 541 DPVVAARLRALEAEGRDGFSELQVPAAALALRQGFGRLVRTRGDRGLVAILDRRLVTKGY 600 Query: 607 GATFLASLPPAPRTRDIARA 626 G FLA+LP P R +A A Sbjct: 601 GRAFLATLPRCPVLRSVAEA 620 >UniRef50_A5TWB3 ATP-dependent helicase n=14 Tax=Fusobacterium RepID=A5TWB3_FUSNP Length = 822 Score = 350 bits (898), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 221/692 (31%), Positives = 347/692 (50%), Gaps = 84/692 (12%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR--- 61 FA DG LAK I GF+ R+ Q +MA + AI + + +++EAGTGTGKT AYL PA++ Sbjct: 128 FAKDGILAKEIKGFEYRKEQEEMAHYIQDAINEDRKIIIEAGTGTGKTLAYLIPAIKWAV 187 Query: 62 -AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 KKKVII+T + LQ+QL +D+P +K + L+KGRSNYLC +RL + G Sbjct: 188 ANKKKVIIATNTINLQEQLLLKDIPLAKSIIKEDFSYVLVKGRSNYLC-KRLFNELSIGR 246 Query: 121 DLPVQILS-----DVILLRSWSNQTVDGDISTC-VSVAEDSQAWPLVTSTNDNCLGSDCP 174 + ++ S + + W N+T GD + V D W LV ST + CLG CP Sbjct: 247 SIDIETFSMEAREQIEYILKWGNKTKTGDKAELPFEVYPD--VWELVQSTTELCLGKKCP 304 Query: 175 MYKDCFVVKARKKAMDADVVVVNHHLFLADMVVK-ESGFGE---LIPEADVMIFDEAHQL 230 K+CF +K R + M+AD+++ NHH+F AD+ V+ E+ F ++P D++IFDEAH + Sbjct: 305 YRKECFYMKTRIEKMEADILISNHHVFFADLNVRAETDFDSEYLILPRYDMVIFDEAHNI 364 Query: 231 PDIASQYFGQSLSSRQLLDLAKDI-----------TIAYRTE-------LKDTQQ----- 267 +A YF +S L I + R E L+D+QQ Sbjct: 365 ESVARSYFSVEVSKISFSRLLNRIYQKKNKRKKEKSALIRVEDTIDEKDLEDSQQYIYLL 424 Query: 268 ---------LQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELC 318 LQ D + + ++ E +R+ L N ++ ++ L +TL Sbjct: 425 NALKEEISVLQNIGDEYFEEIR----KIYETNTEAPIRKSLNNFEMTKSRFL--ETLRDK 478 Query: 319 YDVAKLSLGRSALLDAAFERAT------------------LYRTRLKRLKEINQ---PGY 357 D+ + L L +F +++T + K IN Y Sbjct: 479 KDIFQSKLADFLTLMMSFNNVIDEEKDKNPEVINFNNHLKMFKTYIDSFKFINSFEDDNY 538 Query: 358 SYWYECTSRHFTLAL--TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE 415 YW + S+ + L TPL++A K ++ IF SAT+ N + ++F LG++ Sbjct: 539 IYWLDINSKRTNVVLTATPLNIAKKLSSVLFDNLDRLIFASATIVANGNFNYFKKSLGLD 598 Query: 416 QAESL--LLPSPFDYSRQALLCVLRNLPQT-NQPGSARQLAAMLRPIIEANNGRCFMLCT 472 + + + ++ SPF+Y Q + + ++ + N + + I+ NG+ F+L T Sbjct: 599 EEDCIEAIIKSPFNYDEQMSVYIPTDIQDSENINAFVTDASKFILDILLKTNGKAFILFT 658 Query: 473 SHAMMRDLAEQFRATMT---LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRG 529 S+ M+ + + V L G+ + QL+++F A N +L T+SFWEGVDV+G Sbjct: 659 SYTMLNQIYYSISKKLIDKGFEVFLHGDKPRSQLIKEFKEAENPILFGTTSFWEGVDVQG 718 Query: 530 DTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDAD 589 + LS VII KLPF P DP++ A + GG+ F + QLP+A+I KQGVGRLIR Sbjct: 719 ENLSNVIITKLPFLVPTDPVVSAISKKIEEDGGNSFTDFQLPEAIIKFKQGVGRLIRKKT 778 Query: 590 DRGVLVICDNRLVMRPYGATFLASLPPAPRTR 621 D G + I D+R++ + YG+ F+ +LP + Sbjct: 779 DSGNIFILDSRILKKRYGSLFINALPSQKNIK 810 >UniRef50_B2A1E9 Helicase c2 n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1E9_NATTJ Length = 636 Score = 349 bits (895), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 212/628 (33%), Positives = 342/628 (54%), Gaps = 42/628 (6%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK---KVI 67 L I F+ RE Q M++ V +A++ G VVEAGTGTGK+ AYL PA++ + +++ Sbjct: 15 LQHHIDKFETREGQIDMSLGVLKALQDGGHFVVEAGTGTGKSLAYLLPAVQLAQDEFRMV 74 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 IST + ALQ+QL +D+P V K + T V ++KGRSNYLC ++ Q G V + Sbjct: 75 ISTATIALQEQLLQKDIPLVEKIIGRTLRVEVIKGRSNYLCKQKFNQHF--GQTSFVNSI 132 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 + L+ W N+T GD + ++ E W V S +++CL C Y +CFVVK RK+ Sbjct: 133 QERELIE-WVNETETGDRNELQTMPE---IWEKVCSQSESCLAMRCQFYSECFVVKLRKR 188 Query: 188 AMDADVVVVNHHLFLADMVVK--ESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSR 245 A A+++V NHHL+ +D+ ++ G + P+ + +IFDEAH +PD A++ G+ + Sbjct: 189 AETAELLVTNHHLYFSDLNLRIDSDGSMSIFPDYEGVIFDEAHHIPDTATKSLGREVKYS 248 Query: 246 QLLDLAKDITI----AYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLREL--- 298 +++ L K++T ++ ++ Q+ + A + DFR E Y LREL Sbjct: 249 RVIKLFKEVTSYLKQKFQAQVNLVQEAEASAVKAFNKLSDFR----ESDYL--LRELDSF 302 Query: 299 LANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPG-- 356 ++ + ++ L +E C A + R E+ + +RL + K Sbjct: 303 ISLKEFRKKLSKLAQHVEEC---ALEEMDRP-------EQPRMLASRLNKTKLDLDLILD 352 Query: 357 -----YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSR 411 Y W S +L+ P+ V + +E + I TSATLS+N +F +R Sbjct: 353 LEEEDYISWVNQQSSDISLSTNPVFVHKQLREFLFDNVDRIIMTSATLSINGKFAYFKNR 412 Query: 412 LGIEQ-AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFML 470 +G+ Q A++ + SPF+Y Q+ + + +N P+ RQLA + II+A GR +L Sbjct: 413 VGLSQDAQTYQIESPFNYQEQSNIYIPKNFPEPRSGEYNRQLADTIEQIIDAAGGRTLVL 472 Query: 471 CTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGD 530 TS++ + + Q + + + QG K ++L F + +++L+AT+SF EGVDV G Sbjct: 473 FTSYSTLNSIYNQLKDKVPYEIYCQGIHPKNKILSWFQNDASSVLMATNSFREGVDVPGS 532 Query: 531 TLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADD 590 +L +VI+DKLPF PD+PL+KA++E + G + F QLP+AV+ +KQG GRLIR +D Sbjct: 533 SLQVVIMDKLPFAVPDNPLIKAKIEKLQQEGQNSFMNYQLPEAVLAVKQGFGRLIRHNND 592 Query: 591 RGVLVICDNRLVMRPYGATFLASLPPAP 618 G+ + D R+ + YG F+ SLP AP Sbjct: 593 CGIFALLDPRVFTKSYGRHFINSLPNAP 620 >UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG63_THET1 Length = 960 Score = 342 bits (877), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 238/701 (33%), Positives = 351/701 (50%), Gaps = 99/701 (14%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----AL 60 F+P G+L+K PG++ R+ Q MA+ V ++I + LVVEAGTGTGK+ AYL P AL Sbjct: 256 FSPGGELSKTFPGYEVRDQQIDMALEVVRSINNSKHLVVEAGTGTGKSLAYLIPSAIFAL 315 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGN---VALLKGRSNYLCLERLEQQAL 117 + ++V+IST + LQDQLY++D+P V K L G V+L+KGR+NYLCL R E+ Sbjct: 316 KNNQRVVISTDTINLQDQLYNKDIPAVRKLLGGKGKDLRVSLVKGRNNYLCLNRWERFLR 375 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 +G + P + V +L W T+ GD+S +++ Q W V++T + C C K Sbjct: 376 SGINTPEEAKFAVKVLL-WLQTTITGDVSELPLTSDEKQFWQRVSATEETCTTRVCRNRK 434 Query: 178 --DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIAS 235 CF+ +AR +A + +VV+NH L L+D+ S ++P D +I DEAH+L D A+ Sbjct: 435 GRQCFLFRARVEAESSHLVVINHALLLSDLASNNS----VLPNYDYLIIDEAHRLEDQAT 490 Query: 236 QYFGQSLSSRQLLDLAKDIT-------------------IAYRTELKDTQQLQKCADRLA 276 + G + SR L +L + R +Q+ A RLA Sbjct: 491 NHLGFEVDSRALHELLNRVMDNSNPVRPEGISARLPVHMQGSRASNASVEQVTNIAMRLA 550 Query: 277 QSAQDFRLQLGEPGYRGNLRELL-ANPQIQRAFLLLDDTLELCYDV-------------A 322 Q + R ++ E + +L LL A+ +Q + D+ L L +V Sbjct: 551 QRTERTRARVDE--FFASLGRLLPASMGMQNGY---DEHLRLTAEVRGGEQWEGVLLAWE 605 Query: 323 KLSLGRSALLDAAFE-----------RATLYRTRLKRLKEINQPGYSY------------ 359 L L L+D Y L ++ I Y Sbjct: 606 NLKLTLRELVDEVHHCGELLEGLEGLHIAEYEELLAEVQAIEVFLQDYIHEMNSIITAPT 665 Query: 360 -----WYECTSRHFTLAL--TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL 412 W + R+ T+ L PL V +E + K + I TSATL+ + + + T RL Sbjct: 666 ENDVTWISYSHRYGTITLHKAPLDVGGILQEELYSKKKAVILTSATLTTDRNFDYVTGRL 725 Query: 413 GIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCT 472 G+ + + L+L SPF+Y ALL V ++P+ G + +++ ++ A GR +L T Sbjct: 726 GLYEFQQLMLGSPFNYQETALLLVPTDIPEPGTAGYQDAVESLVAELVLAAEGRTMVLFT 785 Query: 473 SH--------AMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEG 524 SH A+ R+LA + VL QGE S+ +LLQQF S +L+ T SFWEG Sbjct: 786 SHSAVQATQKAIYRELARH-----DILVLSQGEGSRHRLLQQFKSNPRTVLIGTRSFWEG 840 Query: 525 VDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRL 584 VDV GD LSL+II KLPF P++P+ AR E D F++ +P A++ LKQG GRL Sbjct: 841 VDVVGDALSLLIIAKLPFEVPNEPVFVARSETF----ADAFNDYAIPQAILRLKQGFGRL 896 Query: 585 IRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIAR 625 IR DRGV+VI D R++ + YG FL SLP + AR Sbjct: 897 IRSKTDRGVVVILDKRVLTKRYGVKFLTSLPNCKMQKGPAR 937 >UniRef50_A6C6H8 ATP-dependent helicase, DinG family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C6H8_9PLAN Length = 666 Score = 341 bits (875), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 228/647 (35%), Positives = 345/647 (53%), Gaps = 40/647 (6%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA-- 62 DG++A+ + ++ R Q +MA AV +AI++ Q L+VEAGTG GK++AYL PA+ A Sbjct: 13 LGSDGKIAQRLEKYEHRPEQLEMAEAVAKAIDQKQHLLVEAGTGVGKSFAYLVPAILATC 72 Query: 63 ----------KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL 112 +K++I+ST + +LQ+QL RD+P ++ L + L+KGRSNY+ L RL Sbjct: 73 KQNETRSGKDRKRLIVSTNTISLQEQLIHRDIPFLNAVLPVEFSAVLVKGRSNYISLRRL 132 Query: 113 EQQALAGGDL--PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG 170 + G + LS + + WS++T DG + + + W + S + NCLG Sbjct: 133 KGAVERAGSTFSKEEELSQLDQIVQWSHKTTDGSRAD-LEFRPIPKIWDEIQSEHGNCLG 191 Query: 171 SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQL 230 C Y DCF +AR++ +ADV+VVNH LF +D+ ++ G ++P+ D +I DEAH + Sbjct: 192 KRCATYNDCFYYRARRRVWNADVLVVNHALFFSDLAIRREG-SSILPDYDTVILDEAHTI 250 Query: 231 PDIASQYFGQSLSSRQL----LDLAKDIT---IAYRTELKDTQQLQKCADRLAQSAQDFR 283 +A + G S+++ Q L D T + L D QQ + + D Sbjct: 251 EAVAGDHLGLSITNSQFDYLFNKLYNDRTQKGLLLHHNLVDCQQHVTRLRFMVEDLFDHL 310 Query: 284 LQLGEPGYRGN--LREL--LANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERA 339 L+ + N +R+L + N Q LL E + + L AA ER Sbjct: 311 LEWQDSSGLANRRIRQLPPIENCVSQEMRLLAARIAEYAFTLKNEE--EKIELSAAAERC 368 Query: 340 TLYRTRLKR-LKEINQPGYSYWYECT-SRHFTLALT--PLSVADKFKELMAQKPGSWIFT 395 T L L + + YW E T RH + + P+ V ++ + + + I T Sbjct: 369 TALGDSLNSWLTQQAEADSVYWVEATRGRHQRVKMVNAPVDVGPVLRDELFNQAQTVILT 428 Query: 396 SATLSVNDDLHHFT-SRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQ--L 452 SATL+V D FT SRLG+ Q+E L L SPF+Y Q L + +P + +A + + Sbjct: 429 SATLAVGDQDFSFTRSRLGLTQSEELKLGSPFNYQEQVRLILPAAMPDPGENPAAYEAAV 488 Query: 453 AAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT---LPVLLQGET-SKGQLLQQFV 508 A L+ IE +G F L TS+ MM+ A++ ++ L + LQG+ + +L++F Sbjct: 489 AEKLKQYIEQTDGHAFALFTSYKMMQQCADRISGWLSEHNLALYLQGDGLPRSLMLERFR 548 Query: 509 SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEV 568 + +L T SFW+G+DV GD L+ VII KLPF+ PD PLL+AR+E R RGG+PF + Sbjct: 549 NNPRGVLFGTDSFWQGIDVPGDALTNVIITKLPFSVPDHPLLEARVEAIRNRGGNPFMDY 608 Query: 569 QLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 Q+P+A+I LKQG GRLIR A D G +VI D R+ + YG FL SLP Sbjct: 609 QIPEAIIKLKQGFGRLIRTASDYGQVVILDPRVRTKRYGEKFLESLP 655 >UniRef50_C1ZB20 DNA helicase, Rad3 n=3 Tax=Planctomycetaceae RepID=C1ZB20_PLALI Length = 659 Score = 338 bits (868), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 240/650 (36%), Positives = 342/650 (52%), Gaps = 51/650 (7%) Query: 8 DGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL------- 60 +G LA+ +P ++ R Q +MA AVT AI G+ LVVEAGTGTGK+YAYL PA+ Sbjct: 12 EGLLARRLPHYEVRGEQLEMARAVTAAIAAGEHLVVEAGTGTGKSYAYLVPAILAATANQ 71 Query: 61 ------RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQ 114 AK++VIIST + +LQ+QL SRDLP ++ L + L+KGRSNY+ L RL+ Sbjct: 72 GSTVDGGAKRRVIISTHTISLQEQLISRDLPLLNSILPVEFSAVLVKGRSNYVSLRRLKG 131 Query: 115 QALAGGDL-PVQILSD-VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD 172 L P D V L W+ +T DG +++ + Q W V S + NCLG + Sbjct: 132 ALEKSRSLFPTSEAEDQVRSLAGWARETNDGSLAS-LDFKPLPQVWDEVRSEHGNCLGKN 190 Query: 173 CPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPD 232 CP Y DC KAR++ +ADV++VNH LF AD+ ++ G ++P+ ++FDEAH L Sbjct: 191 CPTYSDCHYYKARRRVWNADVLIVNHALFCADLALRREG-ASVLPDYQTVVFDEAHTLEQ 249 Query: 233 IASQYFGQSLSSRQLLDL---------AKDITIAYRTELKDTQQLQKCADRLAQSAQDF- 282 +A+ + G +SS Q+ + K + Y E + + RL +F Sbjct: 250 VAADHLGLGISSGQIEYMLNRLFNEKTQKGLIAGYPLEPQ-----RALITRLKHDVYEFF 304 Query: 283 ---RLQLGEPG-YRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSAL-LDAAFE 337 R ++ + G G +RE LA L T L AKL + L +A E Sbjct: 305 DEIRHRVHDHGPANGRVREPLAIENTLSGDLRKLAT-SLAEYAAKLKQEEEKIELVSASE 363 Query: 338 RATLYRTRLKRLKEINQPGYSYWYECTSRHFTLAL----TPLSVADKFKELMAQKPGSWI 393 R + + E + YW E T L + +P+ V +E + K + I Sbjct: 364 RLISLAGSISQWVEQGRGDSVYWVETTGAQRNLKVKLCCSPIEVGSVLREELFNKVPTVI 423 Query: 394 FTSATLSVNDDLHHFT-SRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQ-TNQPGSAR- 450 TSATL+V F SRLG+ +++SL L SPF+Y Q L + +P T+ P Sbjct: 424 LTSATLAVGQQSFDFIRSRLGLTRSQSLRLGSPFNYREQMKLVLPDGMPDPTDSPADFEF 483 Query: 451 QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF-----RATMTLPVLLQGETSKGQLLQ 505 + ++ + +GR F+L TS+ M++ + R +L GE + Q+L+ Sbjct: 484 AVCEKIQEYVSQTSGRAFVLFTSYKMLQSCERRLTNWLIRKNFSL-YSQSGELPRSQMLE 542 Query: 506 QFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPF 565 +F A+L T SFW+GVDV GD L VII KLPF+ PD PLL+AR+E R RGG+PF Sbjct: 543 RFRKDPAAVLFGTDSFWQGVDVPGDALQNVIITKLPFSVPDHPLLEARVEAIRARGGNPF 602 Query: 566 DEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 E Q+P+A I LKQG GRLIR DRG++VI D R+ +PYG FL SLP Sbjct: 603 MEYQVPEAAIKLKQGFGRLIRTKTDRGMVVILDPRIRTKPYGRVFLESLP 652 >UniRef50_D2QZI1 Helicase c2 n=2 Tax=Planctomycetaceae RepID=D2QZI1_9PLAN Length = 666 Score = 329 bits (843), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 226/669 (33%), Positives = 338/669 (50%), Gaps = 76/669 (11%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---- 60 P G++A +PG++ R Q ++ + +A+ G+ LV EAGTG GK++AYL PA+ Sbjct: 7 LGPAGRIAARLPGYEHRPQQLDLSGGIAKALAAGRHLVAEAGTGVGKSFAYLVPAILHAT 66 Query: 61 ---------------RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSN 105 +K+++IST + +LQ+QL ++DLP + + L+KGR N Sbjct: 67 SDQAENAQASEGDEEGPRKRIVISTHTISLQEQLLAKDLPLLRSVIPREFTAVLVKGRGN 126 Query: 106 YLCLERLEQQALAGGDL--PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTS 163 Y+ L RL+ A L + V L +WS +T G +S +++ S W V S Sbjct: 127 YVSLRRLQYAAERARTLFSTEEEFEQVRDLVAWSKETGGGSLSD-MTIKPKSTVWDEVAS 185 Query: 164 TNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMI 223 + NCLG +CP Y +CF +AR++ A ++VVNH LF +D+ ++ G ++P+ D I Sbjct: 186 DSGNCLGRNCPTYSECFYYRARRRVHHAQILVVNHALFFSDLALRRVG-ASILPDYDAAI 244 Query: 224 FDEAHQLPDIASQYFGQSLSSRQ----LLDLAKDIT---IAYRTELKDTQQL-------- 268 DEAH + +A + G S++S Q L L D T + +L QQL Sbjct: 245 LDEAHTIEQVAGDHLGLSITSGQIQYLLSRLYNDRTNKGLLVSRKLTTAQQLVMQCYLRA 304 Query: 269 ----QKCADRLAQSAQDFRLQLGEPGYRGNLRELLANP---QIQRAFLLLDDTLELCYDV 321 CA LAQ ++ EP NL +++R +DD E Sbjct: 305 DDFFHDCAT-LAQQRDHKNGRIREPDQVDNLLSPSLLKLSREVRRCGEQIDDESE----- 358 Query: 322 AKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY-ECTSR----HFTLALTPLS 376 R L AA +R L + + G YW + SR L+ P+ Sbjct: 359 ------RQNFLSAA-DRLQLISGEISHWISQDTAGSVYWISQQASRAGKPRVELSAAPID 411 Query: 377 VADKFKELMAQKPGSWIFTSATLSVND-DLHHFTSRLGIEQAESLLLPSPFDYSRQALLC 435 V +E + +K S I TSATL+ ++ SR+G+ Q++++ + SPF+Y QA L Sbjct: 412 VGPALREHLFEKTRSVILTSATLATGKGSFDYYKSRIGLTQSDAIRVGSPFNYREQAQLI 471 Query: 436 VLRNLPQTNQPGSARQ-----LAAMLRPIIEANNGRCFMLCTSHAMMRDLAE---QFRAT 487 ++ LP PGS + A ++ IE +G F+L TS+A + A +F A Sbjct: 472 LVSGLPD---PGSEKDKFEVAAAEQMKRYIERTDGHAFVLFTSYAHLERTASLLTRFLAE 528 Query: 488 MTLPVLLQ-GETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPD 546 L + Q G + Q+L +F +L+ T SFW+GVDV GD L VII KLPF+ PD Sbjct: 529 NNLALYSQAGHEPRTQMLARFKENPRGVLLGTDSFWQGVDVPGDALQNVIIPKLPFSVPD 588 Query: 547 DPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPY 606 PLL+AR+E R GG+PF + QLP+AVI L+QG GRLIR + D G++VI D R+ + Y Sbjct: 589 QPLLEARLEAIRESGGNPFRDYQLPEAVIKLRQGFGRLIRSSRDSGMVVILDPRMQTKAY 648 Query: 607 GATFLASLP 615 G TFL SLP Sbjct: 649 GRTFLESLP 657 >UniRef50_B4D6W3 Helicase c2 n=2 Tax=Verrucomicrobia RepID=B4D6W3_9BACT Length = 661 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 227/652 (34%), Positives = 333/652 (51%), Gaps = 53/652 (8%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----L 60 F+ G LAKA F+ R Q++MAV+V A+ + + +V+EAGTG GK+ AYL PA L Sbjct: 21 FSETGMLAKA-KNFEYRREQQEMAVSVATALSEQRHVVIEAGTGVGKSLAYLVPAVLWAL 79 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 KKK ++ST + LQ+QL +D+P V K L L KGR+NY+C RLE+ Sbjct: 80 EHKKKAVVSTYTINLQEQLVYKDIPIVQKVLPVEFEAMLWKGRANYICPLRLERAIAHAQ 139 Query: 121 DL---PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 +L P Q +++ + W+ T DG +S SV DS W V S C C Sbjct: 140 ELFTSPEQ--AELQRIWEWAQTTQDGTLSD-FSVEPDSSVWAQVCSEQHICTTKSCGNNP 196 Query: 178 DCFVVKARKKAMDADVVVVNHHLF------LADMVVKESGFGELIPEADVMIFDEAHQLP 231 CF +ARK+ + ADVVV+NH LF +A+ ESG+ + D +IFDEAH + Sbjct: 197 KCFYQRARKRLLTADVVVMNHTLFFLNLGGIAEQEENESGY---LFANDFVIFDEAHTVE 253 Query: 232 DIASQYFGQSLSSR----QLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLG 287 +A++ G +S L L T ++ K L + F +LG Sbjct: 254 QVAAKQIGLGVSQYGLRYALQRLYNPKTKKGLFQVHRNPNAVKETATLIEEVDSFFDKLG 313 Query: 288 EPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLS-------------LGRSALLDA 334 E G RE ++++ +++D L +AKL LG++ L D Sbjct: 314 ERGDFKKGREY----RVRQPDIVMDS---LTAPLAKLQQMVVETLRGIEDDLGKAELQDL 366 Query: 335 AFERATLYRTRLKRLKEINQPGYSYWYECTSR---HFTLALTPLSVADKFKELMAQKPGS 391 R R+ + + + YW E T + + L P+ VA + L+ + Sbjct: 367 G-RRIRDARSAIATFLKQEAEDHVYWIEKTGKTQQYHALHAAPVDVAAYLRALLFPEGKC 425 Query: 392 WIFTSATLSV-NDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSAR 450 I TSATLSV N+ L +F +R+G ++ E+ + SPFDY RQ + V R +P G Sbjct: 426 CIMTSATLSVGNEALTYFRNRVGADEVEARQIGSPFDYERQMKIYVTRKMPDPRDSGYEA 485 Query: 451 QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT---LPVLLQGET-SKGQLLQQ 506 LA + + + GR F+L TS+ M +LA R + +L+QGE + +L+ + Sbjct: 486 ALAEQIEHFVGMSKGRAFVLFTSYKAMTNLASALRERLDDLDYKLLVQGEGLPRHRLISE 545 Query: 507 FVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD 566 F +L T SFW GVDV G+ LS VII +LPF PD PL++AR+E GGD F Sbjct: 546 FKKDERHVLFGTESFWSGVDVPGEALSNVIITRLPFAVPDHPLIEARLELIEANGGDAFA 605 Query: 567 EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 E LP+A++ L+QGVGRLIR D+G++VI DNR++ + YG F+ +LP P Sbjct: 606 EYSLPEAILKLRQGVGRLIRTKQDQGIVVILDNRVLTKSYGQAFMRALPKCP 657 >UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chloroflexi (class) RepID=A5UUI5_ROSS1 Length = 956 Score = 323 bits (829), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 239/721 (33%), Positives = 355/721 (49%), Gaps = 120/721 (16%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---- 60 F+PDG L +A G++ R+ Q +M+ AV +G L+ EAGTGTGK AYL PA Sbjct: 240 FSPDGALGRAFAGYEQRDQQVRMSEAVADTFNQGGALIAEAGTGTGKGLAYLVPAALHAA 299 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGN-----VALLKGRSNYLCLERLEQ- 114 R ++V+IST + LQDQL+ +D+P + + + + ALLKGRSNYLCL+R + Sbjct: 300 RRGERVVISTNTINLQDQLFFKDIPALQQVMSNGADEAPFTAALLKGRSNYLCLKRYKDL 359 Query: 115 ---QALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGS 171 Q L D V+ L V L W T GD + ++ +W +++ + C G Sbjct: 360 RRDQRLMSDD--VRALLKVQL---WLPTTESGDRAELPLHEGENASWNRMSAAWEQCTGP 414 Query: 172 DCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLP 231 C ++ CF KARK+A A +V+VNH L +AD+ V+ ++IP D +I DEAH L Sbjct: 415 RCSEFQRCFFFKARKQAEAAHLVIVNHALLMADLAVE----NDVIPPYDYLIIDEAHNLE 470 Query: 232 DIAS------------------------------------QYFGQSLSSRQLLDLAKDIT 255 D+A+ +F +S+++R +D A I Sbjct: 471 DVATDQLSFNVDREGLLAFLDDIFTEGQAQVVGGLLSELPNHFRESMATRTDIDRADAIA 530 Query: 256 IAYRTELKDTQQ--------LQKCADRLAQ-SAQDFRLQLGEPGYRGNLRELLANPQIQR 306 R + + L R A+ +A D RL++ + +LR + +++R Sbjct: 531 DTLRPAVARARDAVYGCFNVLMTFIKREAELTAYDSRLRITD-----SLRRKPSWAEVER 585 Query: 307 AFLLLDDTLELCYDVAKLSLGRSALL------------DAAFER-------ATLYRTRLK 347 A+ D L + LGR L DA R AT R + Sbjct: 586 AW----DALSVALHAVGEGLGRLETLLIDLKDAELLEYDALMLRVQALRRYATDVRVNIG 641 Query: 348 RLKEINQPGYSYW--YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDL 405 + W ++ TL+ PLSVAD + + + + I TSATLSV + Sbjct: 642 HILTGGAEEKVTWLTHDRMRDTLTLSAAPLSVADVLRTNLFEAKTATILTSATLSVGGNF 701 Query: 406 HHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNG 465 R+G++ AE L L SPFDY+RQALL + +++P+ NQ G R L + + A G Sbjct: 702 AFIRERIGLDHAEELTLDSPFDYTRQALLYIPQDIPEPNQNGYQRALEQAIIDLARATGG 761 Query: 466 RCFMLCTSHAMMRDLAEQFRATMT------LPVLLQG-ETSKGQLLQQFVSAGNALLVAT 518 R +L T+ +R + +RA + VL QG + S+ LL++F +L+ T Sbjct: 762 RMLVLFTATNALR---QTYRAIQEPLEDAGIAVLGQGIDGSRRSLLERFKEFPGTVLLGT 818 Query: 519 SSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLK 578 SSFWEGVDV GD LS+++I KLPF+ P DP+ AR E DPF++ +P +++ K Sbjct: 819 SSFWEGVDVVGDALSVLVIAKLPFSVPTDPIFAARSEQF----DDPFNQYAVPQSILRFK 874 Query: 579 QGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP-------PAPRTRDIARAVRFLA 631 QG GRLIR +DRGV+ + D RL+ + YG FL SLP P R D+A+ RFLA Sbjct: 875 QGFGRLIRSREDRGVVAVLDRRLLTKKYGQMFLESLPHTTVRSGPLQRLPDLAK--RFLA 932 Query: 632 I 632 + Sbjct: 933 V 933 >UniRef50_A6DIX1 ATP-dependent helicase, DinG family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIX1_9BACT Length = 644 Score = 318 bits (816), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 205/633 (32%), Positives = 323/633 (51%), Gaps = 47/633 (7%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK------KKVIISTG 71 F+ R Q MA V A+ +G L VEA TG GK+ AYL PA++ K +II+T Sbjct: 16 FERRPQQETMASKVYYALSEGLNLCVEAPTGVGKSIAYLLPAVKWHRNTEQTKPIIITTH 75 Query: 72 SKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD-LPVQ-ILSD 129 +K LQ+QL +D+P V L N + GR NY+C+ R+ A D LP + ++ + Sbjct: 76 TKHLQEQLLKKDVPAVQLMLGEDFNAVIGMGRGNYICMRRMNAAAAGSPDFLPDESMIPE 135 Query: 130 VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAM 189 V ++SWS + +G T + A D+ AW V + NCL CP +K CF K+R+ Sbjct: 136 VFRIKSWSATSENG-CKTELPFAVDNGAWGTVNAEEGNCLNQRCPHFKPCFFQKSRRSLY 194 Query: 190 DADVVVVNHHLFLADMVVKESGFGE---LIPEADVMIFDEAHQLPDIASQYFGQSLSSRQ 246 ADV++VNH LF AD+ +K E ++P A +I DE H + D+A+ + G LS+ Sbjct: 195 GADVIIVNHALFFADLAIKAETGDEQAGILPSASAIIVDECHTVEDVAAVHLGIRLSAGT 254 Query: 247 LLDLAKDI--------TIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLREL 298 L + I I+ ++ + K D + Q L + + E Sbjct: 255 FLYQLRRIYNKRSKRGAISTVSDNRGRHLAAKMHDEVRDFFQSLHAWLPDENKTHRIHEP 314 Query: 299 LA--NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEI---- 352 + NP + L LEL D + E+ T YR+ +RL ++ Sbjct: 315 VVPENP-LAEGLTQLCGLLELYADEE----------EGNPEKETEYRSLSRRLLKLTDSL 363 Query: 353 ------NQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLH 406 + + +W+E +++H ++ + VA +L+ + + TSATL+V++ L Sbjct: 364 SFFLRASSEEHVFWFEKSTKHLSMHAAAIDVAPILNDLLFRSKTPVVTTSATLAVSEKLS 423 Query: 407 HFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGR 466 ++ SR+G+ ++ ++L SPFD+ Q + + LP + ++ LR I + G Sbjct: 424 YYRSRVGMSESLDMILDSPFDFKNQMKVFAAQTLPSPKENDYEKEALTWLRYFIHMSTGG 483 Query: 467 CFMLCTSHAMMRDLAEQFRATMT---LPVLLQGET-SKGQLLQQFVSAGNALLVATSSFW 522 F+L TS + M+ +A+ R M L +L+QGE S LLQ F N++L T +FW Sbjct: 484 AFVLFTSFSQMKRIADAVRPFMNEMGLKLLVQGEAASSALLLQAFKEDNNSVLFGTDTFW 543 Query: 523 EGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVG 582 GVDV G++L VII ++PF PD PL+ AR E GG F + +P+A + L+QG+G Sbjct: 544 TGVDVPGESLRNVIIMRIPFAVPDHPLIAARCEHLEKTGGRAFFDFSVPEAQLKLRQGIG 603 Query: 583 RLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 RLIR A DRG++V+ D+R+ YGA FL ++P Sbjct: 604 RLIRSAKDRGIVVLMDSRVSNTNYGAKFLRAMP 636 >UniRef50_C3WBH3 ATP-dependent helicase DinG n=2 Tax=Fusobacterium RepID=C3WBH3_FUSMR Length = 823 Score = 317 bits (813), Expect = 8e-85, Method: Compositional matrix adjust. Identities = 194/697 (27%), Positives = 345/697 (49%), Gaps = 75/697 (10%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----AL 60 F G L++A GF+ R+ Q MA + + + P++VEAGTGTGKT AYL P A+ Sbjct: 126 FEKTGLLSQAFKGFEYRDEQLHMATHIEKGLNSETPVIVEAGTGTGKTLAYLIPSIEWAI 185 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + KK+V+IST + LQ+QL ++D+P + ++ L+KGR NYLC + + Sbjct: 186 KNKKRVVISTNTINLQEQLLNKDIPIAKRVIQGDFKYILVKGRGNYLCNRKYHNVVMGDK 245 Query: 121 ----DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 DL + + W NQT GD ++ D+ W L S D C G+ CP Sbjct: 246 SLLEDLTTSQKNQFAEIIKWGNQTETGD-KAELTFEADNTIWELFQSETDMCSGNKCPYK 304 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVV-KESGFG---ELIPEADVMIFDEAHQLPD 232 +CF +K+R + AD+++ NHH++ +D+ + KE GF ++PE +++FDEAH + Sbjct: 305 NECFFLKSRDEKKKADILITNHHMYFSDLAIRKEIGFNTEYSILPEYGLVVFDEAHNIEK 364 Query: 233 I--------ASQY-FGQSLSSRQLLDLAKDITIAYRTELK---------------DTQQL 268 + AS+Y F ++++ + + K T A + LK + +++ Sbjct: 365 VARDYFSYEASKYSFTKTMNQIFITEGKKKNTGALDSVLKHIKSEELDNHGILEREIEEI 424 Query: 269 QKCADRLAQSAQDF---------RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTL---- 315 + L + +++ + ++G +R E+ +P + D L Sbjct: 425 KLKHKSLYIAGREYFNHIIEVFSKGEMGTFTFRARKEEIENSPFLNTLNDFKDKFLSEYN 484 Query: 316 -------ELCYDVAKLSLGRSALLD---AAFERATLYRTRLKRLKEINQPGYSYWYECTS 365 EL ++ K R+ ++ +R + + + + + + YW E S Sbjct: 485 SYNRKVRELIKEL-KDEEDRAGYINDFSKYIDRIDGFINNFRFIHDFSDEEFIYWIEVNS 543 Query: 366 R--HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE-SLLL 422 R + L TPL + + ++ + IFTSAT+++ +D +F +G+++ ++ Sbjct: 544 RKSNSKLVATPLKIDGELQKNLYLNLNQIIFTSATIAIGNDFTYFKESIGLDKNTLDKVI 603 Query: 423 PSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 SPFDY Q + + ++P + +++ L+ + + G+ F+L TS+ + + Sbjct: 604 HSPFDYDNQMKVYIPNDIPNPSDKNFIDEISEYLKTQLIVSRGKAFVLFTSYQTLNYVYY 663 Query: 483 QFRATMT---LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDK 539 R + + + + G + QL+ +++ N +L T SFWEGVD++G LS VI+ K Sbjct: 664 MIRDELEANGIELFIHGMAPRSQLVNMYINGKNPVLFGTDSFWEGVDIKGHQLSNVILIK 723 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LPF P DP+ +A +E +G + F E Q+P+AVI KQG+GRLIR D G + I DN Sbjct: 724 LPFKVPSDPVTEAIIEHITAQGKNSFTEYQIPEAVIKFKQGIGRLIRSKTDSGTITILDN 783 Query: 600 RLVMRPYGATFLASLP--------PAPRTRDIARAVR 628 R++ + YG F+ S+P + +DI+++V+ Sbjct: 784 RVITKKYGKYFMDSIPTKNINILSKSEILKDISKSVK 820 >UniRef50_B2URD7 Helicase c2 n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2URD7_AKKM8 Length = 661 Score = 316 bits (809), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 223/643 (34%), Positives = 345/643 (53%), Gaps = 39/643 (6%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK- 63 FAPDG ++A F+ R Q+ MA+AV +A++ PL+VEAGTG GK+ YL PA++ Sbjct: 23 FAPDGLFSRA-RDFEYRAEQQSMALAVARALQVDAPLLVEAGTGVGKSLGYLLPAVKFAL 81 Query: 64 ---KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 +K +IST + LQ+QL+++D+P + AL + ALLKGR NYLC RL ++ALA Sbjct: 82 DFDRKAVISTHTINLQEQLFNKDIPLLRTALGIDFSAALLKGRQNYLCHTRL-RRALAQM 140 Query: 121 D--LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 D +++ ++ W+ +T DG +S ++ S+ W +V S C C Sbjct: 141 DSLFTQGEAAELKRIQDWALRTQDGTLSD-MAFRPSSKVWAMVCSEPHACSMRHCG--PS 197 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMV----VKESGFGELIPEADVMIFDEAHQLPDIA 234 C ARK+ ++A VVV+NH LF M +E+GF + P D +I DEAH + +IA Sbjct: 198 CPYQAARKRVLEAKVVVLNHTLFFGLMAQAEDSEEAGF--VFP-GDFVILDEAHMIENIA 254 Query: 235 SQYFGQSLS----SRQLLDLAKDITI-AYRTELKDTQQLQKCADRLAQSAQDFRLQLGEP 289 ++ G LS + +LL + T L + Q+ D + S F+ + Sbjct: 255 ARQLGVQLSEPHLNYELLRMYNPRTHKGLLKPLNNPSLFQRVQDVMDASGLFFQNARDDL 314 Query: 290 GYRGNLREL-LANPQIQRAFL---LLDDTLELCYDVAKLSLG---RSALLDAAFERATLY 342 G+ G+ + + + P+ + L L++ EL + K + L D A R Sbjct: 315 GFAGSGKIVRILQPEWSQDILSQPLMELIGELKTEREKQEENAAVKDELADMA-ARMEEA 373 Query: 343 RTRLKRLKEINQPGYSYWYECTS---RHFTLALTPLSVADKFKELMAQKPGSWIFTSATL 399 + LK L ++ + G+ YW E + R+ ++ P+ V D +E + S I TSATL Sbjct: 374 QASLKVLMDMTEEGHVYWAERSGPDGRNMSVCSAPVEVGDILRERLFSAGRSAILTSATL 433 Query: 400 SVND-DLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRP 458 D D+ +F R+G E+ L + SPF+Y Q L V R++P+ +QP A L ++ Sbjct: 434 GTGDADMSYFAGRVGAERIRKLQIGSPFNYREQMRLIVARSMPEPDQPEYAEVLPEWIKR 493 Query: 459 IIEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQGE-TSKGQLLQQFVSAGNAL 514 + + GR F+L TS+ +M AE+ R + +QG+ + +L+ F +++ Sbjct: 494 YLAESRGRAFVLFTSYRLMVQAAEKVRPFCEEQGWTLYVQGQDMQRHAMLEAFRKDVDSV 553 Query: 515 LVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAV 574 L T SFW GVDV G++LS VI+ +LPF PD PL+++R E R RGG+PF E +P A+ Sbjct: 554 LFGTDSFWTGVDVPGESLSNVIVTRLPFEVPDHPLVESRFESIRERGGNPFYEYSVPVAI 613 Query: 575 ITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPA 617 + L+QGVGRLIR D G++VI D R+ + YG FL SLP A Sbjct: 614 LKLRQGVGRLIRTRSDSGMVVILDPRVATKRYGMRFLKSLPEA 656 >UniRef50_Q1PXS1 Similar to ATP-dependent DNA helicase (DNA-damage-inducible protein G) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXS1_9BACT Length = 847 Score = 315 bits (808), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 211/696 (30%), Positives = 336/696 (48%), Gaps = 90/696 (12%) Query: 7 PDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RA 62 P G L+ IPG++ RE Q M +V+ A +EAGTGTGK+ AYL PA+ + Sbjct: 136 PGGILSVTIPGYEYRESQVDMLTSVSDAFNNDTVATIEAGTGTGKSLAYLLPAIFWSVKN 195 Query: 63 KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL 122 K++V+IST + LQ+QL +D+PT+ L+KGR+NY+CL R Q GD+ Sbjct: 196 KERVVISTNTINLQEQLMYKDIPTLKIENIPNFKSVLVKGRNNYICL-RKAQNLQFEGDM 254 Query: 123 PVQILSD--VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 ++ +I + SW+ +T DG + + D+ W +V S D C C Y CF Sbjct: 255 LIEEREKKQLIHILSWAEKTRDGSKADLNLLVNDN-VWEMVQSEADQCTRLKCNFYNKCF 313 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFG----ELIPEADVMIFDEAHQLPDIASQ 236 AR+ A AD++V+NHHL +AD+V+++ G ++P +I DEAH L +A+ Sbjct: 314 FYSARRNASSADILVINHHLLMADLVLRKETRGYDSTAILPPFKRIIIDEAHNLESVATS 373 Query: 237 YFGQSLSSRQLL---------------------------------DLAKDITIAYRTELK 263 G S S ++L D+ DIT +L Sbjct: 374 NIGLSFSRMRILKPLGKLVNQKDNKKGLLPFLKNKIKDVDFQCNKDITVDITEGIYPQLL 433 Query: 264 DTQ-QLQKC-----ADRLAQSAQDFRLQLGEPGYRGNLR---ELLANP------------ 302 D + ++ C +D + E G LR ELL+ P Sbjct: 434 DMRIEIYTCVTNTFSDIFESVNSYINNKFLENGVELKLRITDELLSTPLWSDSIEKKIRH 493 Query: 303 ---QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKE------IN 353 +I +LL+ +L + +L +L + F T +TRL K + Sbjct: 494 LCTEIHNFVILLN---KLIAAIERLDKESRDILSSLFIDITSCKTRLNTAKNDLFSFIRS 550 Query: 354 QPGYSYWYEC--TSRHFTLAL--TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFT 409 + W E + +F + P+ +++ K + + I TSATL++++ + Sbjct: 551 EENLCRWIELRRYNDNFFIKFCNAPIDISNALKAYLFDNYRTIILTSATLTIDNTFTFYQ 610 Query: 410 SRLGI-----EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANN 464 G+ ++ L+L SPFDY Q+++C+ ++ + + L L +I + Sbjct: 611 KNTGLHLLPEKRITELILSSPFDYKSQSMICIPTDISDPDDSYYKKDLVENLSKLIAITD 670 Query: 465 GRCFMLCTSHAMMRDLAEQFRATMT---LPVLLQGETSKGQLLQQFVSAGNALLVATSSF 521 GR +L TS+ ++ D+ + + T L QGE ++ LL+ F + ++L AT SF Sbjct: 671 GRSLVLFTSYRLLNDIFDMLKPYFTGQGYTCLKQGEDNRHNLLETFKNDKTSILFATDSF 730 Query: 522 WEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGV 581 WEG+DV+GD L VII +LPF P++P+++AR E ++GG+ F + LP AV+ LKQG Sbjct: 731 WEGIDVKGDALECVIITRLPFKVPNEPIIEARTEAIEMKGGNSFYDYSLPVAVLKLKQGF 790 Query: 582 GRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPA 617 GRLIR +DRGV+ I D R+ + YG F+ SLP A Sbjct: 791 GRLIRSKEDRGVVFIFDRRIATKSYGKVFIKSLPKA 826 >UniRef50_D1AJB0 Helicase c2 n=5 Tax=Fusobacteriaceae RepID=D1AJB0_SEBTE Length = 832 Score = 315 bits (807), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 200/685 (29%), Positives = 327/685 (47%), Gaps = 71/685 (10%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----AL 60 F G + K P F+ R+ Q +M+ + +++ + + ++EAGTGTGKT AYL P AL Sbjct: 123 FGDLGIIRKKYPDFEIRDEQYKMSKDIEKSLNENKKALIEAGTGTGKTLAYLIPTLEYAL 182 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 K IIST + LQ+QL ++D+P V + + L+KGR NYLC +L+ + Sbjct: 183 ENNLKAIISTNTINLQEQLINKDIPLVKELIGQDFKYTLVKGRGNYLCKRKLQNAIMEES 242 Query: 121 DLPVQILSDVIL-LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 D +++L L+ W+ T GD + + W V D C CP + C Sbjct: 243 DDSED--KEILLNLQKWNETTKYGD-RNELRYGISFEIWEKVNCELDLCTNVKCPYFSSC 299 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVK-ESGFG---ELIPEADVMIFDEAHQLPDIAS 235 + ARK+ +D++V+NHH+F AD+ ++ E GF ++P D++IFDEAH + D A Sbjct: 300 YFFNARKEIGKSDLLVLNHHMFFADLSIRSEIGFNTDYSILPNYDILIFDEAHNIEDTAR 359 Query: 236 QYFGQSLSS-------------------------RQLLDLAKDIT------IAYRTELKD 264 YF +S R L+ L +++ I E + Sbjct: 360 SYFTSEVSKYSFGKLMGNIYNKRVRNYNKSGIFVRALIYLKDNLSEEEYEIIDKVKEEEI 419 Query: 265 TQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFL--------------- 309 + L K D++ + F L + + +++ I+ + L Sbjct: 420 IENLNKYYDKIIEIFDRFLLGFSKDSEQMEIKKRFDKDYIKSSSLWKEIMKLRKESVHLY 479 Query: 310 --LLDDTLELCYDVAKLSL----GRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYEC 363 ++ +L ++ K L G ER ++ L + + +Q + YW Sbjct: 480 SIMIKGLTKLTNEIDKFRLEDENGIIFDFKKYIERVKVFMKDLLYILDSDQEDHVYWTNI 539 Query: 364 TSRHFTLAL--TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL- 420 R ++ + TP VAD + + K +FTSATL+V ++ +G+E+ + Sbjct: 540 NLRKGSIRIYATPFEVADDLEHNLFNKMDRILFTSATLAVEQKFDYYKKNIGLEKKGIIE 599 Query: 421 -LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 ++ SPFDY +Q + + + N + ++ ++ GRCF+L TS++ + Sbjct: 600 EIIDSPFDYEKQMKVYIPDDTKDPNSLEFFSDVYDFIKKLVINTKGRCFLLFTSYSSLNF 659 Query: 480 LAEQFRA---TMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 + + R M +L QGE + ++++ F A+L T SFWEG+DV+GD+L V+ Sbjct: 660 IYNKIRGELEKMGYTLLKQGELPRHEMIELFKIRDKAILFGTDSFWEGIDVQGDSLKSVV 719 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 I KLPF SP+DP+ +A +E R +PF Q+P AVI KQGVGRLIR D G++ I Sbjct: 720 IVKLPFKSPEDPVTEAIIEYMRKNNQNPFMNYQIPQAVIKFKQGVGRLIRSKTDTGIVTI 779 Query: 597 CDNRLVMRPYGATFLASLPPAPRTR 621 DNR++ + YG FL SLP R Sbjct: 780 LDNRVIKKAYGEKFLKSLPKTSIIR 804 >UniRef50_A0YCJ4 Helicase c2 n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCJ4_9GAMM Length = 643 Score = 311 bits (797), Expect = 5e-83, Method: Compositional matrix adjust. Identities = 214/643 (33%), Positives = 316/643 (49%), Gaps = 31/643 (4%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 A G + + P F RE Q+QMA+ V Q+I+ L+VEA +G+GKT AYL P + + Sbjct: 11 LAAGGPIDRQWPEFVAREGQQQMAIRVQQSIDDQVSLLVEAPSGSGKTLAYLVPIVMTAQ 70 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL------- 117 + IIST S+ LQ QL+ DLP + L VALL+GRSNYLC L++ L Sbjct: 71 RAIISTASRYLQSQLFKHDLPLIQGLLGSHRKVALLQGRSNYLCPYYLDKNTLRLRSEQE 130 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 + G Q + L T G++S P VTS+ D+CL + CP + Sbjct: 131 SSGGYDRQSYQQLTRLSQRFRNTGIGELSLLAPELAPG-LLPHVTSSRDDCLSTQCPDFS 189 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 C ++ AR++A AD+V+VNH L +D V+++ G L+P A V++ DEAH++ D A Sbjct: 190 RCPLMAARQQAEGADIVIVNHSLLFSDQVMRKEQLGSLLPSAGVVVVDEAHRISDFAQTI 249 Query: 238 FGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQ--SAQDFRLQLGEPGYRGNL 295 G LSS L L +D++ A + + + + ++L S D + +P +R Sbjct: 250 VGLRLSSGTLKSLCRDVSRAIQVGAPEQRLILSRLEKLQSGLSKLDAHIPSAKPYHRQQH 309 Query: 296 RELLANPQIQRAFLLLDDTLELCYDVAKLSLG-RSALLDAAFERATLYRTRLKRLKEINQ 354 +++ I L D + D + + L R+ L+ + RL EI Sbjct: 310 VDVINQLSIALRQLRRDLNIVKQRDHSFVQLEIRTGLI-------------VDRLNEIVS 356 Query: 355 PGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 W + F + PL+++ KEL Q P SWIFTSATL+VN F LG+ Sbjct: 357 YKGLCWVQGRENGFVIQTIPLTISLLIKELFQQSPCSWIFTSATLTVNSSPDRFKRVLGL 416 Query: 415 EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSH 474 + S D+ RQA+L + + L P++ A GR L +S+ Sbjct: 417 DAVNFYQASSDIDFQRQAMLYTPKIPVDPRKDEFYDYYVEQLLPLLAAAKGRVLCLFSSY 476 Query: 475 AMMRDLAEQFRATMTLPVLLQG------ETSKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 + A + R VL+Q +L+ Q + +L+AT SFWEGVD+ Sbjct: 477 RGLNATASRLRRKGK-AVLIQRSPRDPRRVDNYKLVAQLKNQPQGILLATGSFWEGVDLS 535 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 G LS V IDKLPF DDPL++ R ++ G D F E LPDA++ L+QG GRL+R Sbjct: 536 GFPLSAVAIDKLPFAHRDDPLIQLRSQELSGHGVDSFSEYLLPDAIVRLRQGCGRLLRRV 595 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 DRGV++I D RL + YG F+ASLP R ++ F + Sbjct: 596 SDRGVIMIADPRLQSQAYGQDFMASLPSMRRAVTVSEIESFFS 638 >UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2 Tax=Desulfitobacterium hafniense RepID=B8FZZ1_DESHD Length = 929 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 209/679 (30%), Positives = 351/679 (51%), Gaps = 75/679 (11%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---- 60 F+ G L + ++ R Q QMA AV +++ +V+EAGTGTGK+YAYL P L Sbjct: 240 FSSGGILENKLKSYESRLGQLQMAKAVGESLTGSTHIVIEAGTGTGKSYAYLIPGLWWSK 299 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE-----QQ 115 + KKV+++T + LQ+Q++ +DLP +++ L ++ ALLKG+SNY+CL+R Sbjct: 300 KTGKKVVVATHTIPLQEQIFKKDLPLLAQVLPFSFRGALLKGKSNYICLKRWSFTLGVTA 359 Query: 116 ALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 LA G+ + +LS ++ LR +T GD + ++ W + ++C+ C Sbjct: 360 ELAPGE-RLALLSVMVWLR----ETTTGDWQEVSQIPSLNKLWGSLNCEEESCIPGKCSH 414 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIAS 235 C+++++RK+A +AD+++VNH L +D+ +++ ++PE +I DEAH L A Sbjct: 415 ANRCYMLQSRKRAEEADLIIVNHSLLFSDIKTEKN----ILPEYHELIIDEAHHLHQAAL 470 Query: 236 QYFGQSLS----SRQLLDLAKDITIAYRTELKDTQQ--------------------LQKC 271 + G +S SR L L++ + ++ +K Q L + Sbjct: 471 EQLGNEISLEQISRVLNLLSRSMAGSFYGNVKARAQVWERLLSVALWERFRGYLEKLPEA 530 Query: 272 ADRLAQSAQDF-----RLQLGEPGYRGNLR--ELLANPQIQRAFLLLDDTLELCYDVAKL 324 D L Q A++ ++ E YR + + P + L L++ D+ K Sbjct: 531 CDELYQQAEELFATFAQIVGNELSYRLTVHCHQESWWPTVAVQIENLLGRLKIITDLLKA 590 Query: 325 SLGRSALLDAAFER-----ATLYRTRLKRLKE----------INQPGYSYWYECTSRHFT 369 L LLDA + A R++ L+E ++QP W E ++R Sbjct: 591 MLN---LLDAQDDEDSAALAHEISGRIRNLEEMRECFVLAQQVDQPTRVSWLEQSNR-IL 646 Query: 370 LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE-SLLLPSPFDY 428 L +P+ V++ KE + + TSAT+S+ + HF +G++++ SLL+ SPFDY Sbjct: 647 LKTSPVDVSNLLKEKLFAPLDCAVLTSATISIANSFQHFLREIGLDESTPSLLVDSPFDY 706 Query: 429 SRQALLCVLRNLPQTNQPG--SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA---EQ 483 RQ L V+++L + ++A + + E GR +L TSH +R++ + Sbjct: 707 ERQMQLLVVKDLVDVKHCDLFNTEEVALFISEVTERMQGRTLVLFTSHRFLREIHLPLSR 766 Query: 484 FRATMTLPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPF 542 + + +L QG + + +L+ F++ ++L+ SSFWEG+D+ GD LS VI+ KLPF Sbjct: 767 YLGGSGIELLAQGIDGGRQAILEAFLNNSRSVLLGASSFWEGIDIPGDALSCVILVKLPF 826 Query: 543 TSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 P+ PL+ AR E +G +PF E LP+AV+ KQG GRLIR DRG++++CD R++ Sbjct: 827 GPPNRPLIAARSEYLEAQGRNPFYEFLLPEAVLRFKQGFGRLIRSKSDRGLVILCDGRVI 886 Query: 603 MRPYGATFLASLPPAPRTR 621 + YG FL+SLP R Sbjct: 887 HKRYGRHFLSSLPVKTHIR 905 >UniRef50_D1AXI2 Helicase c2 n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AXI2_STRM9 Length = 667 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 193/654 (29%), Positives = 321/654 (49%), Gaps = 68/654 (10%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----LRAKKKVIISTGSK 73 F+ RE Q M+ + + I+ P+++EA TG+GKT YL PA L K ++IST + Sbjct: 15 FEKRENQINMSKIIKKGIDNDMPVLLEAETGSGKTLGYLIPAIDFALTEMKNIVISTNTL 74 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 LQDQ+ +++LP + K L+KGR+NY+C +L+ + D L + + Sbjct: 75 NLQDQILNKELPLLKKLFGEKMKYTLIKGRNNYVCKRKLQDLVMKSDDEKYMDLIEAV-- 132 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADV 193 ++ GD S + + W + S D+ + CP YK C+ +R K ++ Sbjct: 133 ----KASLTGDRSD-IKYKISNDLWNEIKSDKDSTFANKCPYYKSCYFYLSRSKNEHCNI 187 Query: 194 VVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKD 253 +VNHH+ L D ++K++ LIP+ D+++ DEAH L ++ +Y+ S S +++ K Sbjct: 188 FIVNHHILLLDHIIKQNNNVGLIPKYDLIVIDEAHNLENVVRKYYSLSFSFKEVF---KI 244 Query: 254 ITIAYRTELKDTQQ---LQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA-----NPQIQ 305 I + Y +KD + + K +++++ F + + + N+ + +I Sbjct: 245 IGMLYSNNVKDIENAGLIGKIIINISENSNHFLIDELKEIFFSNINNIYYALVELRKKIV 304 Query: 306 RAFLLLDDTLELCYDVAKLSLGRSALLDAAFE-----RATLYR----------------- 343 R + L+ L D+ L++ + LL+ F + +YR Sbjct: 305 RKYTDLNQNGILTKDICDLNV--NDLLEKIFSSNLILKKEVYRLINFLEERDELDKDNLR 362 Query: 344 --------------TRLKRLKEINQPGYSYWYECTSRHF--TLALTPLSVADKFKELMAQ 387 L+ + E+N Y YW + + TP S++ +F E + Sbjct: 363 LFLSSSYNNLEEHLNTLQEIFELNYEKYIYWMNLDIDNVFPIINATPYSISKEFGENFIE 422 Query: 388 KPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPG 447 K I SATL+V + + + LGI + +PS FDY + + NLP N+ Sbjct: 423 KIRKVILISATLTVGNSFRYIKNSLGIIDSVEENIPSEFDYLNNMNIYLPDNLPLPNEID 482 Query: 448 SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF-RATMTLPVLLQGETSKGQLLQQ 506 + + E NNG+CF+L TS+ ++ +A + + +L VL+QGE +L++ Sbjct: 483 FNERATKFILDYAEKNNGKCFVLFTSYKDLKFVANYLNKYSSSLNVLIQGEYEIIELIKM 542 Query: 507 FVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKA---RMEDCRLRGGD 563 F N++L+ T SFWEGVDV+G+ LS VII KLPF PDDP++ + R+ + L Sbjct: 543 FKEKENSILLGTYSFWEGVDVQGEALSNVIIFKLPFQVPDDPIVSSICYRLNE--LNSNS 600 Query: 564 PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPA 617 F E QLP AV+ +KQGVGRLIR +D+G ++I D R+ + YG L SLP Sbjct: 601 AFKEFQLPYAVLKMKQGVGRLIRSKEDKGNIIILDKRIHKKSYGKIILKSLPKG 654 >UniRef50_D0MD62 Helicase c2 n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD62_RHOM4 Length = 673 Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 235/667 (35%), Positives = 337/667 (50%), Gaps = 70/667 (10%) Query: 16 PGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKAL 75 PGF+ R QRQMA V +AI +G P +EAGTGTGKT+ YL PAL A+ +V++ST +KAL Sbjct: 24 PGFELRPGQRQMAETVVRAIAEGLPAAIEAGTGTGKTFGYLIPALCAEARVLVSTSTKAL 83 Query: 76 QDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSD----VI 131 Q+QL +DLP + K L + ALLKGR NYLC RL+ ++ A + PV D Sbjct: 84 QEQLVHKDLPLLGKLLDRPISWALLKGRQNYLC--RLKIESGAQEERPVFETRDEAEAFR 141 Query: 132 LLRSWSNQT-VDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMD 190 L W+ ++ DGD+ + LVT D C G CP Y CF+++AR++A Sbjct: 142 RLLEWARRSDTDGDLEQFPGRVTPALR-ELVTMDADGCGGRQCPFYDTCFLMEARRRAER 200 Query: 191 ADVVVVNHHLFLADMVVKESGFGE--LIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL 248 DVVVVNH L L D++++ G L+PEA+V++ DEAH+L ++A +S ++ Sbjct: 201 VDVVVVNHALLLQDLMLRARSGGALYLLPEAEVLVIDEAHRLEEMALGALSVYISPYRVE 260 Query: 249 DLAKDI----TIAYRT------------ELK---DTQQLQKCADRLAQSAQDFRLQLGE- 288 L + I +RT ELK DT + A L ++ L L + Sbjct: 261 RLRRQALRLPGIDHRTRAELEALGLVADELKRQADTALAGRPAAPLTEALSVVLLNLRDR 320 Query: 289 PGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKR 348 G G+L Q+QR L+ Y+ L R A DA R R + Sbjct: 321 AGVLGDLVGQTMRLQLQRFGGSAQQELQARYEAVLRGLQRLA-ADAGV---ITERWRAQA 376 Query: 349 LKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSV------- 401 + + + + RH + PL ++++ + + + TSATL+ Sbjct: 377 AEHV------LYVQRERRHPVVICQPLDAGGTLQQVLFEAFPTVVCTSATLTTLAQPLRR 430 Query: 402 --------NDDLHHFTSRLGI-EQAESLLLPSPFDYSRQALLCV---------LRNLPQT 443 + +F R G E+ L++P+PFDY RQALL + R Sbjct: 431 RAAAGEASDGPFAYFRRRTGFPEEGLELIVPAPFDYRRQALLYLPPDPARLDPTRIRDAR 490 Query: 444 NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQL 503 Q L ++ ++ A+ GR +L TS MM LAE + PVL+QG + +L Sbjct: 491 TQQAYEEALIGEVQALVAASRGRALVLTTSLRMMERLAEALQEC-GYPVLVQGSAPRARL 549 Query: 504 LQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGD 563 ++Q + A ++LVAT +FWEGVDV G+ LSLV+ID+LPF +DP +AR E G D Sbjct: 550 VRQ-LKAQASVLVATRAFWEGVDVPGEALSLVVIDRLPFPGREDPYWQARYEQA---GDD 605 Query: 564 PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDI 623 F+ LP A++TLKQG GRLIR DRGV+ + D RL + YG L +LPPA R + I Sbjct: 606 WFELEALPQALLTLKQGFGRLIRTRTDRGVVALLDGRLQTKYYGRWILDALPPARRVQRI 665 Query: 624 ARAVRFL 630 RF Sbjct: 666 DEVTRFF 672 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 307 bits (786), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 220/673 (32%), Positives = 334/673 (49%), Gaps = 75/673 (11%) Query: 9 GQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKK 64 G LA+ IPG++ R Q +M AV A+ L VEAGTGTGK+ AYL PA+ +K Sbjct: 238 GLLAEQIPGYEYRPQQVEMLRAVASALAGNHYLTVEAGTGTGKSLAYLLPAIYWACSQRK 297 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 +V I+T + +LQ+QL+ +DLP + + L ++ AL+KGRSNY+C +L Sbjct: 298 RVAIATHTISLQEQLWQKDLPQLRELLPFSFKAALVKGRSNYICRRKLRDYLANPPAGEA 357 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + L + +LR W T GD S E+ + + + C GS CP +CFV A Sbjct: 358 ERLFAMRVLR-WLEVTTSGDWSEMKLTPEEEGFKFALAADTETCTGSACPFNDECFVNAA 416 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLS- 243 R++A A+++++NH L L+D+ + +++P+ +I DEAH L + A+++ G S+S Sbjct: 417 RREAEAANILILNHSLLLSDIRLNN----QVLPDYPYLIIDEAHHLEEAATEHLGSSVSQ 472 Query: 244 ----------------------------------SRQLLDLAKDITIAYRTELKDTQQLQ 269 + +L D +D+ + L Q+ Sbjct: 473 ASCELFFRRLGRGEQAYSFLGRVRNLARRLPPEGNLELADFLEDMELTVTATLAGWQEFW 532 Query: 270 KCADRLAQSAQDFRLQLGEPGYR----GNLRELLANPQIQRAFLLLDDTLE-LCYDVAKL 324 + RL+ +A+ E GY L+E A + F L++ L L + +L Sbjct: 533 ESLGRLSDAAR-----WEEAGYTLRFTSRLKETPAWDNLLSVFGSLEENLSGLASRLERL 587 Query: 325 SLGRSALLDAAFER--------ATLYRTRLKRLKEINQPGYSYWYECTSR-HFTLALTPL 375 S SA F Y L ++ + + W E + + L PL Sbjct: 588 SELLSAAGAGEFAADAGNFAAVVAQYSYDLGQILDADPATSVSWLEKNNHGQYILRSAPL 647 Query: 376 SVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-----AESLLLPSPFDYSR 430 + EL+ + + I TSATL+VN+ ++ + G+++ S + SPFDY Sbjct: 648 DIGPLLAELLFSRKQAVILTSATLTVNNSFDYYHQQTGLQELPADRVVSCQVSSPFDYRS 707 Query: 431 QALLCVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT 487 QAL+C +R LP Q AR + +L I A GR +LCTSH +R++ E A Sbjct: 708 QALVCSIRGLPNPGQLKDADYARAITPVLTAICPAVGGRSLVLCTSHRFLREVYELLSAD 767 Query: 488 MT---LPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFT 543 + VL QG + S+ +LL++F+ A+L+ +S+WEG+D+ GD L VII +LPF Sbjct: 768 LNGSGYRVLAQGIDGSRSRLLEEFIQTPRAVLLGANSYWEGIDLPGDLLRCVIIPRLPFP 827 Query: 544 SPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 SP P L ARME RG + F + LP A+I +QG GRLIR A DRGVLVI D RL+ Sbjct: 828 SPGIPTLAARMEHLAARGQNAFATLSLPQAIIRFRQGFGRLIRRASDRGVLVILDQRLLS 887 Query: 604 RPYGATFLASLPP 616 + YG F+ SLPP Sbjct: 888 QRYGRLFIQSLPP 900 >UniRef50_B3DY63 Rad3-related DNA helicase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DY63_METI4 Length = 673 Score = 307 bits (786), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 215/651 (33%), Positives = 333/651 (51%), Gaps = 49/651 (7%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 F+P G LA+A ++ R Q +MA + ++EK + L++EA TGTGK+ AYL P+L K Sbjct: 30 FSPSGPLAQAA-HYEYRPQQEKMAEEIYSSLEKKEHLIIEAPTGTGKSLAYLVPSLLYCK 88 Query: 65 KV----IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + +IST + LQDQL +D+P + K + LLKGR NY C +RLE+ Sbjct: 89 QFSQRGVISTHTLNLQDQLLHKDIPLLKKTFFQDFSAVLLKGRQNYFCPKRLEKVMKHAS 148 Query: 121 DLPVQI-LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 DL ++D++ + WS +T GD+ + S W + S C C C Sbjct: 149 DLFSHFEINDLMRIYDWSVRTTTGDVEELDPLPSAS-LWSQICSEPGLCNSRSCSHNPRC 207 Query: 180 FVVKARKKAMDADVVVVNHHLFLADM-------VVKESG--FGELIPEADVMIFDEAHQL 230 F K R+K+ +D+ +VNH + + + KE+G FGE +IFDEAH L Sbjct: 208 FYQKFREKSAQSDLTIVNHAFYFSLLGQSVDPEFQKETGLPFGE-----SFVIFDEAHTL 262 Query: 231 PDIASQYFGQSLSSRQLLD-LAKDITIAYRTEL----KDTQQLQKCADRLAQSAQDFRLQ 285 +AS G S+S +LL+ LA+ + R L K+++ L K + Q AQ Sbjct: 263 EKVASIQLGFSVSKYRLLNNLARLFNPSTRKGLLLCLKESKLLTKNIEAYEQ-AQSLFQA 321 Query: 286 LGEPGYRGNLRE--LLANPQIQRAFLLLDDTLE-LCYDVAKLSLG-----RSALLDAAFE 337 LG + +L E +LA + L DTLE L +++ + + ++ E Sbjct: 322 LGRMLVQNSLSEQRILAPLSLPHP---LPDTLERLVKEISSVLINLEDKEIKEEIENCLE 378 Query: 338 RATLYRTRLKRLKEINQPGYSYWYECT-----SRHFTLALTPLSVADKFKELMAQKPGSW 392 + +L R L E+ P + YW E + + L PL V + L+ +K S Sbjct: 379 KISLERRALLEFVEMKIPEHVYWVELSDPSNPEGNVQLLAAPLEVGPLLQTLLYEKEISV 438 Query: 393 IFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQ-PGSARQ 451 I TSATL V +F R+G+ + + L SPFDY RQ + + +N+P +Q P Sbjct: 439 IMTSATLQVASHFSYFQDRVGL-YSRTFQLQSPFDYGRQMKIIIPKNMPDPSQSPQYEEA 497 Query: 452 LAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT---LPVLLQ-GETSKGQLLQQF 507 LA + ++ G +L T+ + + E +T P +Q G+T + +LL F Sbjct: 498 LAYWIERLVRYTKGSALVLFTNRKTLLTMTEALGQKLTALNFPFFVQDGKTPRHKLLNLF 557 Query: 508 VSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDE 567 A +A+L SFW+G+DV G++L VII KLPF++PD P ++A+ E +G + F Sbjct: 558 KEAQHAVLFGMDSFWQGIDVPGESLRNVIITKLPFSAPDHPQVQAKCEKLEQQGKNAFTH 617 Query: 568 VQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 LP+AV+ +QGVGRLIR +D+G++ I D+R++ + YG FL S+PPAP Sbjct: 618 YSLPEAVLKFRQGVGRLIRSKEDKGIIAILDSRILSKSYGKVFLNSIPPAP 668 >UniRef50_B9XI74 Helicase c2 n=1 Tax=bacterium Ellin514 RepID=B9XI74_9BACT Length = 719 Score = 306 bits (784), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 224/700 (32%), Positives = 351/700 (50%), Gaps = 94/700 (13%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----AL 60 F+P G L++A F+ R Q++MAVAV +A+E LVVEAGTG GK+ AYL P A+ Sbjct: 24 FSPTGILSRA-SNFEYRPQQQRMAVAVAKALENKDHLVVEAGTGVGKSLAYLIPSILYAI 82 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL---EQQAL 117 + KK +IST + LQ+QL +DLP + + L + +LKGR NYLC RL QQ+ Sbjct: 83 ASSKKAVISTHTINLQEQLTQKDLPMLEQVLPIKFSYTMLKGRGNYLCSRRLFKAMQQSN 142 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 + P + ++ + WS T DG +S + D + W V S C C Sbjct: 143 SLFTSPEE--EELKRIHEWSKTTKDGSLSD-FEIEPDPKVWSHVCSERGLCSPKMCGHQS 199 Query: 178 D-------CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGE-LIPEADVMIFDEAHQ 229 + CF +AR++ + ADV+VVNH LF + E ++ + D ++FDEAHQ Sbjct: 200 EFGQQNGVCFFQRARQRILSADVLVVNHTLFFTLLGGIEEENEGGVLFKNDFVVFDEAHQ 259 Query: 230 LPDIASQYFGQSLSSRQLLDLAKDITIAYRTE------LKDTQQLQKCADRLAQSAQDF- 282 + +AS++ G S+SS Q + A RTE L+ + + AD L ++ F Sbjct: 260 MESVASKHIGLSVSSGQ-MRYALQRLWNPRTEKGILATLRQGKTVTLVADLLREADHFFG 318 Query: 283 ----------RLQLGEPGYRGNL---RELLANPQIQRAFLLLDDTLELCYDVAKLSLGRS 329 + Q + N + +I++ L+ D+ + + +L S Sbjct: 319 EVETACEELRKAQSDQNAGESNAARAKRAWTELRIRKPELVQDN---VTLPIQRLREAVS 375 Query: 330 ALLDAAFERATLYR-----TRLKRLKE-----INQP--GYSYWYE---CTSRHFTLALTP 374 L+ ++ T RL L+E +NQ Y YW E T ++F L P Sbjct: 376 ELIKMTEDKDTGQELVECNRRLADLREEVAMFLNQSEEDYVYWVERSGKTQKNFALNAAP 435 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDD------------------------------ 404 + VA+ + + S I TSATLSV++ Sbjct: 436 VDVAEFLRRRLFGCDTSIIMTSATLSVSEKDLESAKAKAAAAEKKSEPERPARFQKRNEF 495 Query: 405 --LHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEA 462 L++F R+G ++A L + +PF Y Q L V+ +P G L + I+ Sbjct: 496 PGLNYFVRRVGAQEATLLQVGTPFHYEEQMKLFVVNKMPDPRDQGYRDALIHWIEHFIKM 555 Query: 463 NNGRCFMLCTSHAMMRDLAEQ---FRATMTLPVLLQGE-TSKGQLLQQFVSAGNALLVAT 518 +G+ F+L TS+++M+D+A++ F + L V +QG T + +L++F +++L T Sbjct: 556 THGKAFVLFTSYSLMQDVADRMQPFFDKLKLEVYVQGTGTPRSVMLEKFKENVDSVLFGT 615 Query: 519 SSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLK 578 SFW+GVDV G+ LS VII +LPF PD PL++AR+E+ GG+PF E LP+A++ + Sbjct: 616 DSFWQGVDVPGEALSNVIITRLPFAVPDHPLIEARIENIEAHGGNPFSEFSLPEAILKFR 675 Query: 579 QGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 QGVGRLIR D+G++V+ DNR++++ YG FL ++P P Sbjct: 676 QGVGRLIRTKTDKGIVVVLDNRVLVKRYGQAFLDAMPKCP 715 >UniRef50_B8CW80 Helicase c2 n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW80_HALOH Length = 822 Score = 306 bits (783), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 203/702 (28%), Positives = 342/702 (48%), Gaps = 81/702 (11%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---- 60 F P G L++ + ++ RE Q ++ V + + ++EAGTGTGK++AYL PAL Sbjct: 130 FEPGGSLSQFLNDYEYREQQLEVVREVINSFNNHEFTLIEAGTGTGKSFAYLVPALFWAK 189 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLC---LERLEQQAL 117 + +K V++ST + LQ+QL +DL + KAL + ++KGRSNY+C ++ LEQ+ Sbjct: 190 KNEKTVVVSTNTINLQEQLIYKDLVLLKKALSFDFKAVMVKGRSNYICKRKIKHLEQELN 249 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 D + + W ++ G S V D++ W + S D CL ++CP + Sbjct: 250 NYFDDDPEKQVQFYKVLDWLEESKSGSKSELNFVV-DNEIWNEIASETDLCLRTNCPFFD 308 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGE----LIPEADVMIFDEAHQLPDI 233 C+ +KARK+ AD+++VNHHL L+D+++K S + E ++P +I DEAH +I Sbjct: 309 TCYFMKARKEVFSADILIVNHHLLLSDIMLK-SEYSERDGGILPRYSNLIIDEAHNFDEI 367 Query: 234 ASQYFGQSLSSRQL-------------LDLAKDITIAYR-TELKDTQQLQKCAD------ 273 AS++ G+ + L L L I + T LK+ +++ K D Sbjct: 368 ASRHLGRPFYYKLLHKYLNKVYYPKNRLSLIPRIRNRFSATNLKNKKEVLKIIDTEIVPQ 427 Query: 274 ---------RLAQSAQDFRLQLGEPGYR----------------------GNLREL-LAN 301 Q +F Q GE R GNL L + Sbjct: 428 VKRVEEQSHEYFQKLNEFVNQDGEGVIRLTQDIIEGEAYSKIVDSGDTLLGNLNNLGIYL 487 Query: 302 PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 + F+ L+ + D++ L+A R + L+ + + Y +W Sbjct: 488 NNLYEEFMTLNSS-----DISNFE-ELIIELEAYINRCQHFAKSLEFNIKAEEENYVFWI 541 Query: 362 ECTSRHFTLAL----TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA 417 E + + L + PL V++ +++ + + I TSATL+VND+ ++F + LGI + Sbjct: 542 E---KDYNLNVKQENAPLKVSNIIDKILWETMDNVILTSATLTVNDNFNYFKTILGINKC 598 Query: 418 ESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 L + SPF+YS QA L + ++P N +L+ ++ G +L TS++M+ Sbjct: 599 SQLKIESPFNYSEQATLIISDDIPPANSKKYLPVATDILKEMLLLLRGSTLVLFTSYSML 658 Query: 478 RDLAEQFRATMT---LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSL 534 ++ + + +L QG + +L+ F + N ++ T SFWEGVD++GD L Sbjct: 659 NYCTKKIEPVLKDDGIVILPQGRYPRKYILETFKANSNQVIFGTMSFWEGVDIKGDDLRY 718 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 +++ KLPF P +P+ ARME + G +PF LP+AVI KQG GRLIR + D G + Sbjct: 719 LVMMKLPFPVPTEPVSAARMEQLKEEGKNPFTNFSLPNAVIRFKQGFGRLIRSSKDTGKI 778 Query: 595 VICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR 636 + D+R+ + YG FL S+P + + + V + +S+ Sbjct: 779 ICLDSRIKTKSYGRVFLNSIPSGCPVKVMDKTVLLQELHNSK 820 >UniRef50_C8W6D5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W6D5_DESAS Length = 957 Score = 305 bits (780), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 203/690 (29%), Positives = 342/690 (49%), Gaps = 76/690 (11%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + D P+G+LAK P ++ R Q QM+VAV Q + K L+ EAGTGTGK+ AYL PA+ Sbjct: 252 VVDILGPEGELAKQHPHYEHRPQQLQMSVAVAQTLNKQSLLLTEAGTGTGKSMAYLVPAV 311 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 + +++V++ST + LQ+QL+ +D+P + + + AL+KGR NYLCL R + Sbjct: 312 LWSAQNRERVVVSTHTINLQEQLWFKDIPMLQQMFGKSFRAALVKGRQNYLCLSRW-SEV 370 Query: 117 LAGGDLPVQ---ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDC 173 + D + + IL+ W +T GD S + W +++ +D C G+ C Sbjct: 371 FSSTDNHSRWEALFYSRILV--WLTKTQTGDRSEINLNGAEYDYWSKISADSDRCKGNQC 428 Query: 174 PMY-KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPD 232 + K CFV +A+K A ++D++++NH L +D+ V+ ++P ++ DEAH L + Sbjct: 429 HWFQKACFVSRAKKTAENSDLIIINHSLLCSDLQVE----NRILPSYGPLVIDEAHHLEN 484 Query: 233 IASQYFGQSLSS---RQLLDLAKDITI-------------------AYRTELKDTQQLQK 270 +A+++FG +S ++ L+ + I A R ++D + Sbjct: 485 VATEHFGYMISESSIKRWLESTDKLAIKLSHNPAAEANNNFDQKIYAVRKSVEDIRHASG 544 Query: 271 CADRLAQSAQDFRLQLGEPGYRGNLR------ELLANPQIQRAFLLLDDTL----ELCYD 320 L ++ EP N L Q L+ +D L ++ D Sbjct: 545 VYFNLLRTEHSINDYAEEPVEAANQNAGGLCVSRLYKEAGQEQLLVEEDNLLTGFKILMD 604 Query: 321 VAKLSLGRSALLDAAFER----ATLYRTRLKRLKEI----------NQPGYSYW----YE 362 K + + + A +E+ A ++ L ++ + P + YW Y Sbjct: 605 NLKKIMLKLEIWAAQYEKWVNTAKIFSLHLNLGTQLFASIEFILTHSDPNFVYWMEKNYF 664 Query: 363 CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI----EQAE 418 ++ + TL +P+ + E + + I TSATLS+ +F R+G+ E+ Sbjct: 665 QSNTYITLRSSPIDIGKLLYEKLFASKKAVILTSATLSIAGSFDYFKERVGLNLYTEEIS 724 Query: 419 SLLLPSPFDYSRQALLCVLRNLPQTNQPGS---ARQLAAMLRPIIEANNGRCFMLCTSHA 475 L + SPF+Y +QA L + +LP N+ +LA ++ ++ + G+ +L TSH Sbjct: 725 ELQIDSPFNYGKQAKLFLTSDLPSQNEVPEQFYHTELANIIEKLVNVSQGKTLVLFTSHR 784 Query: 476 MMRDLAEQFRATMT-LPVLLQGET---SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDT 531 ++ + + + +LL G S+ L+++FV A+L T+SFWEG+D+ GD+ Sbjct: 785 SLKQTYLRLKPVLEDKEILLLGHNIDGSRSALIEEFVRNKKAVLFGTASFWEGIDIPGDS 844 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 LS VII KLPF +P P+++AR+E +G + F E LP AVI KQG GRLIR + D Sbjct: 845 LSSVIIVKLPFWAPSIPIIEARLESLIKQGKNGFWEFSLPQAVIRFKQGFGRLIRSSRDY 904 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAPRTR 621 G +++ D R++ + YG FL SLP R Sbjct: 905 GAVIVLDKRIIQKKYGRYFLNSLPLKHHQR 934 >UniRef50_D1N0Q3 Helicase c2 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0Q3_9BACT Length = 701 Score = 304 bits (778), Expect = 9e-81, Method: Compositional matrix adjust. Identities = 214/654 (32%), Positives = 317/654 (48%), Gaps = 58/654 (8%) Query: 5 FAPDGQLAKAIP-GFKPRE--PQR-QMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 FAP G L +A G +P E PQ+ +M+ A+ A+ G+ L +EA TG GK++AYL P Sbjct: 57 FAPGGPLKQAAEYGGRPYEFRPQQLEMSTAIADALTAGENLCIEAPTGVGKSFAYLVPLI 116 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 A+ + + ++ST + LQ+QL +DLP + + AL KGR NYLC R A Sbjct: 117 YRAVHSGRPAVVSTETINLQEQLIDKDLPLLKQLTGINFKAALAKGRHNYLCRRRF---A 173 Query: 117 LAGGD-----LPVQILS-DVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG 170 + G+ LP L+ DV L W +T DG+ + + + W +V S NCLG Sbjct: 174 MLSGEQRDTLLPAAGLAVDVTRLGKWMQRTTDGERDS-IDFRLEPTVWSMVCSEGINCLG 232 Query: 171 SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVK-----ESGFGELIPEADVMIFD 225 C +++CF KAR+ DAD+VV NH LF D+ ++ G L+P ++ D Sbjct: 233 PKCEFFRNCFYYKARQAWEDADIVVANHALFFTDLGMRLASGGNGAAGSLLPNYGAVLID 292 Query: 226 EAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCAD-RLAQSAQDFRL 284 EAH L D A+++ G LS + + + Y E ++K AD L D R Sbjct: 293 EAHTLEDNAAEHLGLHLSR---IGIVSTLNRLYNPEAARGLLMRKGADPELRGIVADARD 349 Query: 285 QLGEPGYRGNLRELLAN-------------------PQIQRAFLLLDDTLELCYDVAKLS 325 + G+ + + LA+ P + + LL D L+ D+ S Sbjct: 350 E--AYGFFKHFEDFLADHRETALEIQQPDRFPDRLSPHLLKLSKLLTDYLD---DIDDAS 404 Query: 326 LGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELM 385 LDA R + + P Y+ E +L PL+VAD +++ Sbjct: 405 F--RTELDAQLVRCREFLNGIDHFTHKTLPDAVYYAESDRNSISLHAAPLNVADILADVL 462 Query: 386 AQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQ 445 + + SATL+V +F +R G +LLL SPF S QA + + R +P Sbjct: 463 FNQDFPVMLCSATLTVRRSFDYFVNRTGFCNGRTLLLDSPFG-SDQAHIYISRGMPDPKD 521 Query: 446 PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT---LPVLLQGET-SKG 501 LA + +E G+ F+L TS+ +R A+ R +L+QGE ++ Sbjct: 522 DNFNAALADEIPRFVEVTQGKAFVLFTSYGTLRYCADALRGYFQEKGWQLLIQGENLTRT 581 Query: 502 QLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRG 561 LL++F N++L T SFW GVDV G+ LS VI+ KLPF P PL+ ARM +G Sbjct: 582 GLLREFKEDVNSVLFGTDSFWTGVDVPGEALSNVIVTKLPFAVPSHPLIAARMARIERQG 641 Query: 562 GDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 F E LP+AV+ +QG GRLIR DRG++V+ D R++ + YG FL SLP Sbjct: 642 KSSFAEYSLPEAVLKFRQGAGRLIRSRSDRGIIVLLDKRVISKNYGRIFLDSLP 695 >UniRef50_D0LMW6 Helicase c2 n=3 Tax=Haliangium ochraceum DSM 14365 RepID=D0LMW6_HALO1 Length = 650 Score = 302 bits (773), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 221/656 (33%), Positives = 324/656 (49%), Gaps = 47/656 (7%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----AL 60 F P+G LA P + PR Q +A AV AI G+ L+ EA TGTGK+ AY P A Sbjct: 9 FGPEGLLADRFPAYAPRPGQISLARAVDAAIADGEHLLAEAPTGTGKSLAYAVPASYHAA 68 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 +V+++T S LQ+QL ++DLP + L + ALLKG+ NYLCL RL++ G Sbjct: 69 HNGLRVVLATSSINLQEQLAAKDLPFLEGILPWPVRFALLKGKRNYLCLSRLQEAKKDG- 127 Query: 121 DLPVQILSDVILLRS---WSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 I SD+ + RS W+++T GD S +S + W +++ + C G DC Y Sbjct: 128 -FVFDISSDIEMKRSIQDWASETKTGDKSE-LSFEPPDRIWENYSTSAEECKGRDCRYYS 185 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI-PEADVMIFDEAHQLPDIASQ 236 +CF KAR +A AD++V N+HL + ++E+ +L+ P+ DV + DE H+L DIA Sbjct: 186 ECFATKARAEAEKADIIVSNYHLLCVHLQLREATGQDLVLPKFDVAVCDEGHKLADIARD 245 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDF-----RLQLGEPGY 291 +FG ++ L LAK R + +D L D ++DF R Q + Y Sbjct: 246 FFGFRVTPGSLRWLAK------RIQDRDHASLALALD---VESRDFFEALHRYQRSD-AY 295 Query: 292 RGNLRELLANPQIQRAFLLLD-------------DTLELCYDVAKLSLGRSALLDA--AF 336 + LR++ P + LL + D +D + L +A Sbjct: 296 KCRLRQIEPVPYLNLHGLLREIADFFGQTRNSAPDPGMDGFDAETQAARIDDLAEAQRTA 355 Query: 337 ERATLYRTRLKRLKEINQPGYSYWYECTSR-HFTLALTPLSVADKFKELMAQKPGSWIFT 395 RA L L E+ + Y+ E + L P+ V ++ + + S I T Sbjct: 356 ARAALLADNLSAAMELANKDFVYYLEELPKGGVALCGKPIEVNEQLRTAFFDQTQSTIVT 415 Query: 396 SATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAM 455 SATL+ D + LG+ L++ SPFD+ +Q L V + PG +A Sbjct: 416 SATLTTGDSFDYVRKDLGVPSPRELVVDSPFDFRKQVLFIVPDCVIDPRGPGFPTCVAWT 475 Query: 456 LRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALL 515 + + GR L TS+ + D A A VL QG+ + QL+ +F ++L Sbjct: 476 VEQAVRLAGGRTLGLFTSYRNL-DTAYARIADCGYRVLRQGDKPRTQLVDEFRRDVKSVL 534 Query: 516 VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVI 575 + T SFW GVDV+G+ LS V+ID+LPF P+DP++ A E RGG+ F LP A+I Sbjct: 535 LGTESFWAGVDVQGEALSCVVIDRLPFPPPNDPVIDALKE----RGGNSFLSASLPRAII 590 Query: 576 TLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 KQG GRLIR +DDRGV+V+ D RL YG FL SLP ++R + FLA Sbjct: 591 AFKQGFGRLIRASDDRGVVVVLDERLYTTFYGRAFLRSLPAMRKSRTLEDVQTFLA 646 >UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2F3_PELTS Length = 937 Score = 301 bits (770), Expect = 7e-80, Method: Compositional matrix adjust. Identities = 215/693 (31%), Positives = 342/693 (49%), Gaps = 85/693 (12%) Query: 8 DGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR----AK 63 DG LA +PG++ R Q++M VT+A+ + + L++EAGTG GK+ AYL P++ + Sbjct: 250 DGPLADVVPGYEYRPQQQEMIRLVTRALNEEKYLLMEAGTGVGKSLAYLIPSVLWSCLNR 309 Query: 64 KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP 123 ++V+++T + LQ+QL+ +D+P +K +L+KGR NY+CL R + + P Sbjct: 310 QRVLVATRTINLQEQLWHKDIPLAAKVTGRPFKASLVKGRQNYICLRRW----FSVLENP 365 Query: 124 VQILSDVILLR--SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 Q R +W T GD S + + W + +D C+GS C K CFV Sbjct: 366 HQPQEAGFFARVLTWLTVTQTGDKSELNVIPAEEDFWLSICGESDGCMGSRCRYLKYCFV 425 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ- 240 A+++A ++++++ NH L +D+ V+ ++P + +I DEAH L + A+ + G+ Sbjct: 426 NAAKREAEESNLIITNHSLLFSDVKVE----NRILPAYEALIIDEAHHLEESATVHLGRQ 481 Query: 241 ----------SLSSRQLLDLAKDI----TIAYRTELKDT---------------QQLQKC 271 S + + L LA+ + + +KD+ QQL + Sbjct: 482 VTQGALNRWLSAAGKALFRLAEKVPPEDVEKWSETIKDSREVLLEAQGNVHFFFQQLGEL 541 Query: 272 ADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA----------FLLLDDTLELCYDV 321 A L+ D G R + ++LAN FL L+ + V Sbjct: 542 ASALSNDEGDS----GRITLRLSNEKMLANTSYNAVLECGTRCIELFLSLNGKIGYIAKV 597 Query: 322 AKL-SLGRSALLDAAFERATLYRT------RLKRLKEINQPGYSYW--YECTSRHF---T 369 ++ + +AA + +Y + L+ + E + G+ YW +E + R F Sbjct: 598 LEMWGITEEVWAEAARDLFQIYNSGQTIIDDLQFILEGREQGFVYWAEFEYSRRGFKNYA 657 Query: 370 LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-----EQAESLLLPS 424 L P++V E + G+ IF+SAT+SVN HF R G+ E+ S Sbjct: 658 LYAAPVNVGTVLYEQFFKNRGTVIFSSATISVNGTFDHFIDRNGLNNFPPEKIIKASFDS 717 Query: 425 PFDYSRQALLCVLRNLPQTNQPGSARQL----AAMLRPIIEANNGRCFMLCTSHAMMRDL 480 PF + RQALLC+ +LP L A+L+ ++EA GR +L TSH ++R+ Sbjct: 718 PFAFERQALLCICHDLPVQGAVAEEVYLDNLEEAILK-LLEAVGGRTLVLFTSHKVLRET 776 Query: 481 AEQFRATMT---LPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 + + M + +L G + ++ LL++F S +L SSFWEGVDV G+ LS VI Sbjct: 777 YRRLKPRMEARGICILGHGIDGNRLNLLEEFKSTAQTVLFGASSFWEGVDVPGEALSCVI 836 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 + KLPF SP P+++AR+ED R D F ++ +P AVI KQG GRLIR DRG +++ Sbjct: 837 MVKLPFVSPSVPVIEARLEDLARRKRDGFRDLSVPQAVIRFKQGFGRLIRSGSDRGCVIV 896 Query: 597 CDNRLVMRPYGATFLASLPPAPRTR-DIARAVR 628 D R++ R YG FL SLP R DI VR Sbjct: 897 LDRRILSRSYGRRFLNSLPLKKHFRGDIETIVR 929 >UniRef50_C1A7T8 Putative ATP-dependent DNA helicase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7T8_GEMAT Length = 713 Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 236/707 (33%), Positives = 343/707 (48%), Gaps = 106/707 (14%) Query: 5 FAPDGQLAKAIPG------FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP 58 P G +A+A+ G ++ R QR MA AVT +G ++EAGTG GK+ YL P Sbjct: 3 LGPYGLVAQAMRGMYGIRDYEDRPSQRAMATAVTTTFNEGGVALLEAGTGVGKSLGYLVP 62 Query: 59 ALR----AKKKVIISTGSKALQDQLYSRDLPTVSKALK-YTGNVALLKGRSNYLCLERLE 113 ALR ++ ++ST + LQ+QL ++DLP + +AL ALLKG NYLCL RL Sbjct: 63 ALRWAAANGERTVVSTATITLQEQLVAKDLPFLQRALSDQPVRFALLKGWRNYLCLNRLA 122 Query: 114 QQALAGGDL-PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD 172 AG L + DV ++ W+++T DG ++ + A + W V++ D C Sbjct: 123 AAQGAGAALFDDNVSDDVAMIAEWASRTKDGSLAD-LPTAPRGEVWDEVSAEPDLCGRMK 181 Query: 173 CPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKES----GFGELIPEADVMIFDEAH 228 C Y DCF+ KARK+A ADVVVVNHHL L+D+ V+ ++P ++ DE H Sbjct: 182 CEHYNDCFLFKARKEAAAADVVVVNHHLLLSDVAVRRQVQNWEDSAVLPAYKRLVIDEGH 241 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKD-TQQLQKCADRLAQSAQDFRLQLG 287 L + A + G S++ R L L + + L +L D L+ ++ D Sbjct: 242 HLEEAAGSHLGSSITRRALSRLFNRLERRGKGLLPTLAAKLSGKNDLLSVASMDL----- 296 Query: 288 EPGYRGNLRE------LLANPQIQRAFLLLDDTLE--------LCYDVAKLSLGRSAL-- 331 LRE L A + Q F LL LE L + L R+ + Sbjct: 297 -------LREGLFSSVLTARDRTQLLFELLAAVLEQQGGGVLRLTESFQEHDLWRNGIGD 349 Query: 332 --------LDAAFERATLYRTRLK----RLKEINQ------------------------- 354 +DA + + +TRL+ RL+E++ Sbjct: 350 TLKELLNEIDAIAKGLAMVQTRLESDQSRLEELSSTVNEIRGVTRRLQNAGDALMKGLMP 409 Query: 355 ----PGYSYWYECTS------RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDD 404 P W E R+ + PL +A ++ + + + + TSATLS + Sbjct: 410 PADGPAVVRWMEFQGKPTPHERNLAVHCVPLDLAPVLRDDLFGRVETAVVTSATLSTDGG 469 Query: 405 LHHFTSRLGIEQAES----LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAA----ML 456 RLG+ + S + PSPFDY RQALL V +LP N+ AR+ A L Sbjct: 470 FQFLERRLGLAGSTSPVRAAIFPSPFDYPRQALLVVPTDLPAPNE--QAREHFAGVTRHL 527 Query: 457 RPIIEANNGRCFMLCTSHAMMRDLAEQFRA---TMTLPVLLQGETSKGQLLQQFVSAGNA 513 + A++G F L TSH +R++AE R + P+L+ GE + QLLQ+F +G A Sbjct: 528 HDLAHASDGGLFGLFTSHRDVREMAEWMRGQGLSGRWPLLVHGEEPRDQLLQRFRESGRA 587 Query: 514 LLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDA 573 +L+ T++FWEG+DV GD L ++I KLPF P +P++ A+ E RGG+ F E LP A Sbjct: 588 ILLGTATFWEGIDVPGDALRGLLIAKLPFRVPTEPIVAAQCEAIDARGGNAFVEYMLPHA 647 Query: 574 VITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 + LKQG GRLIR A D GV+V+ D R+V + YG L LPPA R Sbjct: 648 SLRLKQGFGRLIRTATDAGVVVLSDPRVVTKRYGRALLNGLPPAQRV 694 >UniRef50_Q7NN01 Gll0614 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NN01_GLOVI Length = 719 Score = 298 bits (764), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 209/640 (32%), Positives = 324/640 (50%), Gaps = 62/640 (9%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIIST 70 +A+ +PG++ R+PQ MA AV + + +V EAGTGTGK+++ L PA+ + K+V+IST Sbjct: 79 VARVLPGYEVRQPQLDMARAVERGFAERIAVVAEAGTGTGKSFSALVPAILSGKRVVIST 138 Query: 71 GSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 + ALQ+Q +D+P + KAL L+KGRS+Y+ R + LA G + Sbjct: 139 ATIALQEQYLYKDIPLLQKALPVRFEARLVKGRSHYVSKRRWSESLLAPG---------I 189 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMD 190 LR W QT GD++ + + S+ W + S D+CL CP + CF ++R+ Sbjct: 190 TWLREWYEQTESGDLAD-LPTSPPSEIWDDIRSDKDDCLREKCPHFDSCFYFESRRSLGQ 248 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 A +++ NH L L D + G+++P+ D+++ DEAHQ + A++ +LS+ + Sbjct: 249 AQILITNHALLLID----RASHGQILPDFDLLVIDEAHQFAEYATRALTLTLSNFGM--- 301 Query: 251 AKDITIAYRTELKDTQQLQKCADRLAQSAQD----FRLQLGEPGY--RGNLRELLANPQI 304 RT + +Q LA++ + F + L E R NL +A+ Sbjct: 302 -------GRTLSRIKKQFPNLGIALARAEAEANAFFEVLLTEAHQTRRYNLDPAMADD-- 352 Query: 305 QRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRL--------KRLKEINQPG 356 L + L + +L+LG L+ R + R RL L+ + +PG Sbjct: 353 -----LSAAVVRLLQSLKELNLGSEDNLETNVAR--MRRDRLVETLTGYEGNLRVLAEPG 405 Query: 357 YSY--WYEC-TSR----HFTLALTPLSVADKFKELMAQKPG-SWIFTSATLSV--NDDLH 406 ++ W E T+R + L TPL VA + + G + ++ SATLS D Sbjct: 406 ENWVNWVEYQTTRGGGTNVALNCTPLDVAPPLGQWFSHPDGPTAVWMSATLSTAGADPFD 465 Query: 407 HFTSRLGIE--QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANN 464 F ++G+ AE + SPFDY Q LL + +LP N A +AA + ++ + Sbjct: 466 FFRRQVGLPAGTAEERIFASPFDYPSQGLLYLPTHLPDPNDASYANAIAAEIEKLVNFSE 525 Query: 465 GRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEG 524 GR F+L TS M+ + A + P Q + K +L++ F + N +L AT+SFWEG Sbjct: 526 GRAFVLFTSLQQMKQVYALLEAKLLWPAQHQEQMPKRRLVEWFRTVKNPVLFATASFWEG 585 Query: 525 VDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDP---FDEVQLPDAVITLKQGV 581 V V G LSLV+ID++PF SP D + AR E GD FD + LP A + LKQG Sbjct: 586 VSVEGPQLSLVVIDRIPFQSPGDIVYDARCELLSRTSGDRWAWFDRLALPYAQLRLKQGA 645 Query: 582 GRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTR 621 GRL+R D+G++ I D R+ + YG T L SLPP +R Sbjct: 646 GRLVRTRTDKGIVAILDPRMHRKAYGKTILKSLPPMQVSR 685 >UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helicase n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EC75 Length = 958 Score = 297 bits (760), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 208/681 (30%), Positives = 343/681 (50%), Gaps = 81/681 (11%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKK 65 +L + +P ++ R+ Q M V QA++ + L++EAGTGTGK+ YL P++ + ++K Sbjct: 253 RLKETLPHYESRDAQDMMFQEVMQALDDNKHLLIEAGTGTGKSLGYLLPSIYQSVKQEQK 312 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL--P 123 V++ST + LQ+QL RD+P +++ + + A+ KGR +YLCL + E + + D P Sbjct: 313 VMVSTHTINLQEQLRDRDIPLLTQVVPFPFKAAIFKGRGHYLCLRKFEHK-INRRDFHSP 371 Query: 124 VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVK 183 + + + W QT +GD W ++S +D+CLG CP ++ C+ + Sbjct: 372 KEDVITAAQMLVWLTQTENGDDEELNLGGRGGDFWETISSDSDSCLGRACPWFRKCYYHR 431 Query: 184 ARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIAS-------Q 236 A+ +A ADVV+ NH D+ +L+P + ++ DEAH L D+A + Sbjct: 432 AKHEAGIADVVITNHSKLFTDVKANH----QLLPSYERLVIDEAHHLEDVAGKHLGLQMK 487 Query: 237 YF---------------GQSLSSRQLLDLA-KDITIAYRTELK----DTQQLQKCADRLA 276 YF GQ + RQLL + + + + + + D +++ DRL+ Sbjct: 488 YFSVVHTLTRLYKDSRSGQLPALRQLLQASPHEKAVEWSSVIDRLYPDLITVKENWDRLS 547 Query: 277 QSAQDFRLQLGE--PGYRGNLR---ELLANPQ--------IQRAFLLLDDTL-------- 315 + G+ PG G L P+ + L L D + Sbjct: 548 DQLFGLLPERGDASPGDAGQFSLRLSPLKKPKDWDSMAELEHQIHLTLGDVVRKGDKLIA 607 Query: 316 ELCYDVAKLSLGRSALLDAA--FERATLYRTRLKRLKEINQPGYSYWYECT----SRHFT 369 E+ D+ S S L D + F+ +R L+ +N G YW E S+ Sbjct: 608 EMKEDLDDYS-ADSLLTDLSGLFKDLAAHREDLRSFMALNDEGTVYWMEANGNFRSKSLQ 666 Query: 370 LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA------ESLLLP 423 L P+ V+ KEL K S I TSATLSV+ LG+++A ++ LP Sbjct: 667 LYAVPVDVSSHLKELFFDKKQSVILTSATLSVDKSFQFMIENLGLQEAAEAGNLNTVQLP 726 Query: 424 SPFDYSRQALLCVLRNLPQTNQP-GSARQLAAMLRPIIE---ANNGRCFMLCTSHAMMRD 479 SPF+Y QALL V R+ P G A + +++ + + A +GR +L TS+ M+R Sbjct: 727 SPFNYREQALLVVPRDFPSVKGSVGDALFVNTLVKSLADTAVATHGRMLVLFTSYRMLRQ 786 Query: 480 LAEQFR---ATMTLPVLLQG--ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSL 534 + E + A+ + VL QG TS+ +L+++F + ++L+ TSSFWEGVD+ G+ L+ Sbjct: 787 VHEPLKEALASSDITVLGQGMDGTSRTKLIRRFQDSSASVLLGTSSFWEGVDIPGEALTC 846 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 + I +LPF P+ PL++A+ E + + +PF ++ +P AVI KQG GRL+R A D+G++ Sbjct: 847 LAIVRLPFQPPNHPLVEAKSELLQQQKKNPFMKLSVPQAVIRFKQGFGRLVRTAQDKGIV 906 Query: 595 VICDNRLVMRPYGATFLASLP 615 ++ D R++ YG FL SLP Sbjct: 907 IVYDTRVIESYYGKYFLYSLP 927 >UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=B1I276_DESAP Length = 921 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 234/665 (35%), Positives = 331/665 (49%), Gaps = 60/665 (9%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----L 60 P G L + F+ R PQ Q+A+AV +A+E+ L VEAGTGTGK++AYL PA L Sbjct: 240 LGPGGVLTRHFADFEYRRPQMQVALAVGRALEEQTVLTVEAGTGTGKSFAYLVPAALWAL 299 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 ++V++ST + LQDQL +DLP + +AL LLKGR +YLCL R Sbjct: 300 DGGRRVVVSTHTVNLQDQLMEKDLPLLGRALDAPLKTVLLKGRGHYLCLRRWGAAVNEQS 359 Query: 121 DLPVQ-ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 LP + L I + W +T GD + E+ W V + + C + C C Sbjct: 360 FLPDEGFLYARIAV--WLARTKTGDRAELSLRPEEKGFWDGVAAGDWGCAHAYCRFNSVC 417 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 F+ +AR+ A A +V+ NH L L+D+ ++ L+P D ++ DEAH L +A++ G Sbjct: 418 FLQRARRAAEQAHLVITNHSLLLSDLKMEN----RLLPAYDALVLDEAHHLEGVATEQLG 473 Query: 240 QSLSS-------RQLLDLAKDITIAY---RTE-LKDTQQLQKCADRLAQ--SAQDFRLQL 286 ++S L L I Y R E L+D + L R A+ R +L Sbjct: 474 TTVSRGALERWVEGLNRLTGRIGEFYPDNRDEFLRDGEALLAAVRRFFALLGARLRRREL 533 Query: 287 GEPGY---RGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAF------- 336 E + R R L A P+ ++L L +L+ V +LS L D+ Sbjct: 534 PEEDFAAERLGPRALDACPETAGSYLELAGSLKAY--VQRLSRAVERLTDSTVPAVQEEL 591 Query: 337 ------ERATLYR--TRLKRLKEINQPGYSYWYECTSRHF---TLALTPLSVADKFKELM 385 E A R + L+ + E PGY +W E R L P+ V + + Sbjct: 592 RVGLEQELAVGKRLASDLEFVYEAADPGYVFWLEGGGRQTAEGVLRAAPVHVGELLHDGF 651 Query: 386 AQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE-----SLLLPSPFDYSRQALLCVLRNL 440 + I TSATL+V F R+G+E SL++ SPF Y+ QALL V+ +L Sbjct: 652 FRSGKPVILTSATLTVQSSFSFFDERVGLEHLPRDLRGSLIVGSPFAYAEQALLYVVTDL 711 Query: 441 PQTNQPGSARQLAAM---LRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT---LPVLL 494 P G L A+ L I+ GR L T+H +R + + + L +L Sbjct: 712 PDPGD-GDGAYLDAVSDALGRIVGVTRGRTLALFTAHKALRTAYRRLKPVLEKQGLELLG 770 Query: 495 QG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKAR 553 G + + +LLQ F + A+L SSFWEGVDV GD LS ++I KLPF P+ P+L+AR Sbjct: 771 HGLDGGRARLLQYFRNTPQAVLFGASSFWEGVDVPGDALSCLVIVKLPFEPPNRPVLQAR 830 Query: 554 MEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLAS 613 E+ R RG F+++ LP AV+ LKQG GRLIR DRGV++I DNRLV + YGA FL S Sbjct: 831 REEVRRRGRSDFNDLCLPQAVLRLKQGFGRLIRTTADRGVVIILDNRLVRKRYGALFLES 890 Query: 614 LPPAP 618 LP AP Sbjct: 891 LPAAP 895 >UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5B5_DESRM Length = 930 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 224/698 (32%), Positives = 347/698 (49%), Gaps = 85/698 (12%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 P+G LA +P F+ R Q M VT+ + + ++VEAGTGTGK+ AYL PA+ K Sbjct: 239 LGPEGILATTLPRFRYRSQQCDMMEQVTKGLNGDKTVLVEAGTGTGKSLAYLVPAIAWAK 298 Query: 65 ----KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 +V+IST + LQ+QL+++D+P ++K +Y A++KGR NY+CL R Sbjct: 299 QNHERVLISTHTINLQEQLWNKDIPLLAKLPEYEFKSAIMKGRGNYICLRRWHSFMKEDN 358 Query: 121 DLPVQ--ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 P + L+ +++ W QT GD V D + W V S +D CLG+ C +K+ Sbjct: 359 HTPDEAAFLAKILI---WIYQTNTGDKGELVLNYSDFEYWYRVCSESDGCLGNRCQYFKE 415 Query: 179 -CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 C+ + A++KA AD+V+VNH L L+D + ++P +I DEAH L + A+ + Sbjct: 416 KCYFMAAKRKAERADIVIVNHSLLLSDA----NADNMILPSYGPLIIDEAHHLENCATDH 471 Query: 238 FGQ-----------SLSSRQLLDLAKD--ITIAYRTE---LKDTQQLQ------------ 269 G+ +++++ L L K +TI R E L+ ++ Q Sbjct: 472 LGRAVTRVGVLRWLAVATKLLSKLEKIAFLTIDGRWEKLLLQSSETKQRTREAATSFFEM 531 Query: 270 -----KCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFL--LLDDTLELCYDVA 322 K DR + R G GN+ + + P A L LL + LC + Sbjct: 532 ALSWIKSIDRNGEGRCSMRFDRG-----GNIDGIPSIPVAVDAELDNLLVNLRTLCQALV 586 Query: 323 KLS----------LGRSALLDAAFERATLYRTRLKRLKEI---NQPGYSYWYECT--SRH 367 K+S G ++ A++ + L+ I + YW E S Sbjct: 587 KISDQLEEGTVITGGGPGIIRDLAAWASVGQELSDNLEWICRHQEESQVYWVEGGGDSPE 646 Query: 368 FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE--QAESLL---L 422 P+ V E + + + TSATLSV+ + H+ + +G++ E++L L Sbjct: 647 VVFRSAPIDVGPLLYEKLFSENRPVVLTSATLSVDGNFKHYINSVGLDFLPQENILEKHL 706 Query: 423 PSPFDYSRQALLCVLRN-LP--QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 SPF+Y+ QA+LCV R+ LP Q + +L+ + I A GR +L TSH +R+ Sbjct: 707 NSPFNYNEQAILCVARDILPPGQVSNKEYHDELSKAIFHISMAAEGRSLVLFTSHRSLRE 766 Query: 480 ----LAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 L +Q+ + + + S+ +L++QF+ +L SSFWEGVD+ G+ LS V Sbjct: 767 TYQRLKDQYENEDICLLGHELDGSRRRLVEQFMEGRRTVLFGASSFWEGVDIPGEALSCV 826 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 II KLPF P+ P+ +AR++ +G + F E Q+P AVI KQG GRLIR +DRGV+V Sbjct: 827 IIVKLPFAPPNHPVTEARLQKLSRQGRNGFMEHQIPQAVIKFKQGFGRLIRGPEDRGVVV 886 Query: 596 ICDNRLVMRPYGATFLASLPPAPRTRD----IARAVRF 629 + D RLV + YG F SLP A RD I++ RF Sbjct: 887 VLDGRLVEKRYGYKFFNSLPIAQHIRDSWLGISKKARF 924 >UniRef50_Q73L75 ATP-dependent helicase, DinG family n=3 Tax=Treponema RepID=Q73L75_TREDE Length = 709 Score = 290 bits (743), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 194/679 (28%), Positives = 329/679 (48%), Gaps = 68/679 (10%) Query: 8 DGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAK 63 DG LA ++ REPQ + ++ + + V EAGTG GK+ AYL PA+ + K Sbjct: 29 DGPLASFFERYEAREPQLALTKSICRCFNEEAIGVFEAGTGVGKSLAYLLPAMMWAKQNK 88 Query: 64 KKVIISTGSKALQDQLYSRDLPTVSKALK---YTGNVALLKGRSNYLCLERLEQQALAGG 120 K+V+ISTG+ LQ QL +D+ T K L L+KGR N+LCL R+ QAL Sbjct: 89 KRVVISTGTINLQQQLIEKDVLTAKKILGKGFQDMKACLVKGRHNFLCLRRM-TQALREN 147 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 D + ++ ++ W+ +T DG S + + W V S DNC + CP + CF Sbjct: 148 DFFTEGQEELDKIKEWATETKDGSRSD-LDFMPTEKVWSTVCSEPDNCPMNKCPYFSGCF 206 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFG----ELIPEADVMIFDEAHQLPDIASQ 236 V+K +++A ++ ++V NHH+ AD+ V+ GFG ++P D +I DEAH + D A Sbjct: 207 VMKLKREAENSSILVANHHILFADLSVRAEGFGYQGTAVLPSYDNIIIDEAHGIEDAAQS 266 Query: 237 YFGQSLSSRQLLDLAKDITIAYR--------------TELKDTQQLQKCADRLAQSAQDF 282 +F +S L K I + YR + K + + + L +A F Sbjct: 267 FFSSDISR---FALHKQINLLYRFRRGKQAGILSGIVSISKKAELFTEIINLLEVAAASF 323 Query: 283 RLQLGEPG------YRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAA- 335 + L E Y+ ++ + ++ +D+ + ++ L++ L++AA Sbjct: 324 NI-LEEQALQVLQTYQSKSLAQTSSDEKEKLLSCVDNFFK---NINNLNIKLENLINAAD 379 Query: 336 --------FERATLYRTRLKRLKEINQ--------PGYSYWYE----CTSRHFTLALTPL 375 + RLK++ + + P +W+E TPL Sbjct: 380 GEEDEEGYIREGLVVLRRLKKMASVMENFLNSSEFPNDVFWFEKIKTSQGEAVRFIQTPL 439 Query: 376 SVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-----EQAESLLLPSPFDYSR 430 ++A + + + I SATL + DD + + +R G+ ++ PSPF Y + Sbjct: 440 NLAPIMRRSVFMPMATVICVSATLKIGDDFNFWLNRNGLYNFTEKKIIKDFFPSPFPYEK 499 Query: 431 QALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM-- 488 + + ++P ++ + + ++E G+ +L TS+ ++ E R + Sbjct: 500 NVVFNIPTDMPMPDENNFQDAVNETVLALLEITQGKTLILFTSYDSLQKTCEYVREHIDE 559 Query: 489 TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDP 548 + +L QGE + QLL +F + L ATSSFW GVDV G++LS VI+ KLPF P +P Sbjct: 560 KIKILKQGEADRMQLLYEFKDDVTSCLFATSSFWAGVDVPGESLSHVILVKLPFAVPTEP 619 Query: 549 LLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGA 608 + KAR + GG+ F ++ +P+AV+ +QG GRL+R DRG++ + D R++++ YG+ Sbjct: 620 IFKARADLIEKSGGNSFMQLSVPEAVVQFRQGFGRLMRSNTDRGIVTVLDKRILVKRYGS 679 Query: 609 TFLASLPPAPRTRDIARAV 627 F+ S+P + +AV Sbjct: 680 IFIQSIPQTIQCFSETKAV 698 >UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI Length = 934 Score = 288 bits (738), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 221/682 (32%), Positives = 329/682 (48%), Gaps = 89/682 (13%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKV 66 L A P ++ R Q M AV Q+ + +VEAGTGTGKT YL PA+ + +V Sbjct: 250 LKNAFPDYELRPGQLAMMDAVYQSFLNNEHTLVEAGTGTGKTLGYLLPAIIFARQEGARV 309 Query: 67 IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQI 126 +IST + LQ+QL S+DLP + K L + N LLKGR +YL L R EQ D Sbjct: 310 LISTYTVQLQEQLLSKDLPLLEKLLGFPANAVLLKGRKHYLSLARFEQSLNEADDNYDTT 369 Query: 127 LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARK 186 L+ + +L W +T GD+ + + W + + + + +D F +ARK Sbjct: 370 LTKMQIL-VWLTETATGDVDELNLSSGGAVFWNKIQNGDSKFISESGWKSRD-FYNRARK 427 Query: 187 KAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS---LS 243 A +AD+++ NH + L + SG ++ P D + DE HQ A ++FG S LS Sbjct: 428 SAENADLIITNHAMLLNSL----SGENQIFPSYDYAVIDEGHQFSKAAGKHFGFSIDYLS 483 Query: 244 SRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQ-------SAQDFRLQ----------- 285 R LL + L D +QL +RL + +A F L Sbjct: 484 LRLLLG---------KIGLYDQKQLLYKLERLLEGRAAMDGAAHPFELNRLVADLQYEMD 534 Query: 286 -----LGEPGYRGNLRELLANPQI--------------------QRAFLLLD------DT 314 +G G R A+ +I + +FL+LD D Sbjct: 535 EFFKLVGIYGKRKLKARKYASSKISFRLTDITPRDFKAVEASAERFSFLVLDLISALEDR 594 Query: 315 LELCYDV-AKLSLGRSALLD---AAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTL 370 L+L + +L+ G ALL+ A R +++ Q + W E R Sbjct: 595 LQLLVPLTGELAPGDQALLEEISACIGELRDVRESIRKTIFAGQTACAVWVELDGRAMQN 654 Query: 371 ALT----PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPS 424 A T P++VA ++ + S + TSATLSV + LG+++ ++ L+ S Sbjct: 655 ATTVYSQPITVAGNLRDGFFNQKKSAVITSATLSVGQSFDYIMDELGLDRFSCQTELIES 714 Query: 425 PFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPII---EANNGRCFMLCTSHAMMRDLA 481 PFDY+ Q L V +LP+ N ++A+ II EA NGR +L TSH M+R Sbjct: 715 PFDYASQVRLAVPSDLPEINSVPLEEYVSAITEHIISLAEAANGRMLILFTSHDMLRRTY 774 Query: 482 EQFRATMTLP---VLLQGETS--KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 E + + L ++ QG TS + +L + F ++L TSSFWEGVD+ G+ LS ++ Sbjct: 775 ELVKESGFLEEYVLIAQGITSGSRTRLTRNFQRFDKSILFGTSSFWEGVDIPGEDLSCLV 834 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 + +LPF+ PD+PL +AR E + RGG PF E LP+AV+ KQGVGRLIR +DRG++++ Sbjct: 835 MVRLPFSPPDEPLGEARKEAIQSRGGRPFSEHALPEAVLRFKQGVGRLIRTKNDRGIIIV 894 Query: 597 CDNRLVMRPYGATFLASLPPAP 618 D R+V YG FL S+P P Sbjct: 895 FDRRIVTASYGRAFLDSIPSIP 916 >UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTU8_BACS4 Length = 922 Score = 286 bits (732), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 200/672 (29%), Positives = 323/672 (48%), Gaps = 85/672 (12%) Query: 13 KAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVII 68 + G++ R Q +M + + +E+ ++EAGTGTGKT AYL PA +KKVII Sbjct: 253 NVMEGYEVRAGQTEMMTYIYETMEERAFGLIEAGTGTGKTLAYLLPAAFLAKEKQKKVII 312 Query: 69 STGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLE---RLEQQALAGGDLPVQ 125 ST + LQ+QL +++PT+ + L + +V +LKGRS+YLCL+ RL Q+ D + Sbjct: 313 STQTIQLQEQLIKKEVPTLERLLPFPIHVVILKGRSHYLCLQKFARLLQED--HNDAYDR 370 Query: 126 ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKAR 185 +S +L W +T GD+ + ++ W + S +C S C + CF AR Sbjct: 371 TVSKAQIL-VWLLETKTGDVEELSLASHSNRFWNDIASDAYSCNSSKCAWFSRCFYQHAR 429 Query: 186 KKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSR 245 A AD+++ NH L LAD++ +LIP+ D I DEAH L D A++ FGQ L Sbjct: 430 NDARKADLIITNHSLILADILTS----NQLIPKYDYAILDEAHHLEDTATEQFGQQLDYL 485 Query: 246 QLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQ 305 L L I + L++ D + +D ++ E G + + Sbjct: 486 SLTHL-----INRMGSKRGEGLLRQVYDEIYNDYRDTVEKIEETGTKVKF-------EWY 533 Query: 306 RAFLLLDDTL--------ELCYDVAKLSLGRSA--LLDAAFERATLYR-------TRLKR 348 FLLL+D + E K++ ++ +++ A R LY R+ Sbjct: 534 ELFLLLNDYVINSNTNFNERGRATVKINAKENSWYVIEEAARRCKLYLEEWLANINRIVD 593 Query: 349 LKEINQPGYS-----------------------------YWYECTSRHFTLALT----PL 375 + E + Y+ YW E ++ A+ P+ Sbjct: 594 ILETIESNYNDAFTSFIDRVEGVYSSLIKLLLEQDDHMIYWIEADTKGPKQAIYIKGRPI 653 Query: 376 SVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPSPFDYSRQAL 433 +V++ +L QK S I TSATL+VN+ ++ RLG+ ++ + SPF + +Q Sbjct: 654 NVSESLADLFFQKKDSVILTSATLTVNNKFNYMIRRLGLSDFYVKTKHIDSPFHWDKQVK 713 Query: 434 LCVLRNLPQTNQPGS---ARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM-- 488 L V ++P G A + I E G+ +L TS+ M+++ + + Sbjct: 714 LMVPTDMPLIQDAGEKAYAEATVMQIYRIAEITKGKMLVLFTSYDMLKNCYNYLKEMLDD 773 Query: 489 TLPVLLQGETS--KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPD 546 ++ QG S + +L + F A+L+ TSSFWEGVD+ G LS+++I +LPFT PD Sbjct: 774 EYAIIAQGVHSGNRTKLTKNFQQFNQAILLGTSSFWEGVDIPGSDLSIIVIVRLPFTPPD 833 Query: 547 DPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPY 606 DP+ +A+ + + G +PF ++ LP A++ KQG GRL+R DRG +++ D R+ Y Sbjct: 834 DPVFQAKSTEMKREGLNPFMKLALPQAILRFKQGFGRLVRTTHDRGAVIVLDRRITNTKY 893 Query: 607 GATFLASLPPAP 618 G F+ SLP P Sbjct: 894 GKLFIKSLPEIP 905 >UniRef50_B0S8U2 DNA helicase n=6 Tax=Leptospira RepID=B0S8U2_LEPBA Length = 661 Score = 281 bits (719), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 192/641 (29%), Positives = 314/641 (48%), Gaps = 45/641 (7%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----LRAKKK 65 QL K ++ R+ Q +M+ A+ A + G V+EAGTG GK+ AYL P+ L + Sbjct: 10 QLPKLWKDYEVRKEQMEMSQAIESAFQTGSNWVIEAGTGVGKSLAYLIPSALFSLENECT 69 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ 125 V++ST +K+LQDQL +D+P VS+AL N + G +NYLC +R + + GD + Sbjct: 70 VVVSTETKSLQDQLLYKDIPLVSEALGVPINAMVALGANNYLC-KRKYNRVMERGDFGPE 128 Query: 126 ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKAR 185 + S + +W QT G + +S W V +DNCLG +CP + + + Sbjct: 129 MESSLPYFVNWEKQTESGIRAEYDGFLSNS-FWSSVARESDNCLGRNCPNFSSSYYFLEK 187 Query: 186 KKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSR 245 K A++++VNHHL + + +G +L+P ++ DEAH P+I + FG + Sbjct: 188 DKWKKANILIVNHHLLASHL----AGDFKLLPPFSQLVIDEAHVFPEIVGKAFGSEIRYE 243 Query: 246 QLLDLAKDITIAYR-----TELKDTQQLQKCADRLAQSAQD-FR-------LQLGEPGYR 292 +L+L + + +LK +++ K + A D FR LQ + R Sbjct: 244 FILNLLHYLYFPEKRTGLVLKLKSNEKIIKQIEASISYANDLFRMLLSAIPLQFNQFSSR 303 Query: 293 GNLRELLANPQIQRAFLLLDDTLELCYDVAK----------LSLGRSALLDAAFERATLY 342 R L N ++ L TLE K L+LG ++ ++ + + Sbjct: 304 HTERIKLDNGALEDTLADLSSTLEGLLSKYKKDSDDMEEKELALGLE-MVAGNLKKVSSF 362 Query: 343 RTRLKRLKEINQPGYSYWYE-----CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSA 397 T RLK P +W E + L P + + + S + TSA Sbjct: 363 LTDF-RLK--TNPNLVFWIEPPPQMAKDPFYYLFSQPKNTDEILANTLFPNMDSVVLTSA 419 Query: 398 TLS-VNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNL--PQTNQPGSARQLAA 454 TLS + +F +G + ++ L SPF Y +LL V + + P ++ + L+ Sbjct: 420 TLSPTAGNFQYFLKEVGTSEVKTKTLNSPFQYQTHSLLFVPKQIADPVSDPKRNKIDLSY 479 Query: 455 MLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNAL 514 + +++ + G F+L TS+ ++ +L E+ R + P+ Q E ++F++ N++ Sbjct: 480 WITRLLKLSEGDAFVLFTSNKLLSELYEEIRNLVPYPIFAQTEMGPIAAKREFLANKNSV 539 Query: 515 LVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAV 574 L SSFW+GVD++GD L VI+ KLPF P +P+L+A+MED +G PF E+Q+P Sbjct: 540 LFGVSSFWQGVDIKGDKLRNVIVTKLPFQVPTEPVLQAKMEDMEKKGKSPFWEMQVPKTC 599 Query: 575 ITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 + L+QG GRLIR D G++ I D R+ + YG L SLP Sbjct: 600 LLLRQGFGRLIRSQSDTGMVSILDPRIHTKSYGKNVLQSLP 640 >UniRef50_Q0AXW2 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXW2_SYNWW Length = 681 Score = 278 bits (711), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 202/668 (30%), Positives = 326/668 (48%), Gaps = 65/668 (9%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----L 60 F G + + +P +K R+ Q + VAV+ A+ + L+ EAGTG GKT+AYL PA L Sbjct: 13 FESSGPMEQLLPDYKFRQEQVNLTVAVSAALSDQEFLLAEAGTGVGKTFAYLLPAVLWSL 72 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL-----EQQ 115 + +KV+I+T +KALQ QL RDLP V + +K A KGR N+LC + ++ Sbjct: 73 QENEKVVIATRTKALQQQLIERDLPDVKRVIKADFTCAEAKGRENFLCWNKYINILAGKK 132 Query: 116 ALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 L G+ + L V+ W+ Q+ GD + + W ++ + +C C Sbjct: 133 RLQEGEF--EFLQSVL---PWAEQSETGDRKELRLKSALMKHWDILAADRKSCRKDKCLY 187 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIAS 235 ++ CF +K K+ + ++V NH L L+D+ V L+PE +I DEAH L A Sbjct: 188 HEKCFRLKMIKRLEKSQIIVTNHALLLSDVQVD----NRLLPEYHYLIIDEAHSLDREAF 243 Query: 236 QYFGQSLSSRQLLDLAKDITIAYRTELK-----DTQQLQKCADRLAQSAQ---DFRLQLG 287 SS +DL + + AY +K D + L +C ++ + + ++ L Sbjct: 244 DKLSMRFSSGDSMDLLEYLQKAYLPHIKELSSVDRELLGECLTHISMAVKLLKEYFSALN 303 Query: 288 EP-----GYRGNLRELLANPQIQRAFLLLDDTLELCYD-------VAKLSLGRSALLDAA 335 P GY L ++ +++ + L + LE+ D + K + Sbjct: 304 RPLSSKNGYEATL--VIKAADLEKTWFL--EALEIHQDWQDSINLLLKNLKKLEECMGGV 359 Query: 336 FERATLYRTRLKRLKE------IN-----QPGYSYWYECT-SRHFTLALTPLSVADKFKE 383 E L R + +E IN Q W +C + ++ +P+ +A + + Sbjct: 360 EESEELSRVIISLQEEADHAYQINEEHSFQSDMLVWLDCERGKVKAVSSSPVCIASELQN 419 Query: 384 LMAQKPGSWIFTSATLSVNDDLHHFTSRLGI------EQAESLLLPSPFDYSRQALLCVL 437 + K S + SATL+V + +F ++ G+ E+ ++LL SPFDY +QA +L Sbjct: 420 RLYHKLESLVMVSATLAVEERFDYFLNKFGLSQLQEEERLKTLLEKSPFDYKKQAGYILL 479 Query: 438 RNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLL 494 ++P ++P +LA +L II+ GR +L TS ++D+A R + +L+ Sbjct: 480 DDMPARDEPDYQEKLAGILSQIIDITGGRTLILFTSRQQLKDIAGIIRPYCEQRQVKLLV 539 Query: 495 QGETSKGQLL-QQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKAR 553 Q E + L +Q+ + ++++ +FWEG+D++GD L ++I KLPF SPD+P +A Sbjct: 540 QNEDGGFETLKEQYTAHPRSVIMGLDTFWEGIDLKGDLLKCLVIIKLPFRSPDEPFCQAW 599 Query: 554 MEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLAS 613 + + F LPDAVI LKQGVGRLIR +DRG +VI D RL Y FL S Sbjct: 600 EKYYQQLNQSGFSRFLLPDAVIRLKQGVGRLIRGENDRGAIVILDARLGKSSYSKVFLNS 659 Query: 614 LP-PAPRT 620 LP PR Sbjct: 660 LPFKNPRV 667 >UniRef50_C0B304 Putative uncharacterized protein n=1 Tax=Proteus penneri ATCC 35198 RepID=C0B304_9ENTR Length = 222 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 132/207 (63%), Positives = 158/207 (76%) Query: 254 ITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDD 313 +T+AYRTE++D QLQK ADRL Q DFRL LGE GYRGNLRELL + +R LLDD Sbjct: 1 MTVAYRTEVRDQAQLQKSADRLTQMVMDFRLVLGETGYRGNLRELLQGGETKRFLTLLDD 60 Query: 314 TLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALT 373 LEL YDV KLSLGRS LLD+AFERAT+YR RLKRL + + PGYSYW+E RHF LA+T Sbjct: 61 ALELSYDVMKLSLGRSQLLDSAFERATVYRNRLKRLIDTSIPGYSYWFESYGRHFLLAIT 120 Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQAL 433 PLSVADKF+EL+ SW+FTSATLSVN+ + ++T RLG+E A +L+L SPFDY Q L Sbjct: 121 PLSVADKFRELIKSHKSSWVFTSATLSVNEQMSYYTDRLGLENATTLILNSPFDYQHQTL 180 Query: 434 LCVLRNLPQTNQPGSARQLAAMLRPII 460 LCV R LP NQP +A++LA ML P+I Sbjct: 181 LCVPRYLPPLNQPYTAKRLATMLTPVI 207 >UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus RepID=C6CUG6_PAESJ Length = 953 Score = 275 bits (703), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 203/696 (29%), Positives = 331/696 (47%), Gaps = 87/696 (12%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKK 65 + + P ++ RE Q M V ++ + L++EAGTGTGK+ YL PAL + + K Sbjct: 252 RFMEKYPNYEEREAQTTMFREVYDSLCSDRHLLIEAGTGTGKSLGYLIPALYYGIQQESK 311 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ 125 +++ST + LQ+QL RD+P + + L + ++ KGR NYLCL + E + + DL V Sbjct: 312 IVVSTHTINLQEQLRQRDVPLLREILPFDFRASIFKGRGNYLCLRKFESK-INAKDL-VA 369 Query: 126 ILSDVIL---LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVV 182 + D I + W ++T GD + S W V S D+CL CP +K C+ Sbjct: 370 PIDDAITASQMVVWLSETETGDQEELNFGNKGSDFWSTVASDADSCLNRQCPWFKRCYYH 429 Query: 183 KARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 +A+ ++ ADV + NH + D+ L+P +I DEAH + ++A ++ G L Sbjct: 430 RAKHESNIADVCITNHSMLFTDVQADH----RLLPSYSHLIIDEAHHVEEVAGKHLGMQL 485 Query: 243 S----SRQLLDLAKDI------TIAYRTELKDTQQLQ---KCADRLAQSAQDFRLQ---- 285 + + Q L KD + R + +D +++Q + D + QD + Sbjct: 486 NYFSLTHQTTRLFKDARSGLLPALRLRLQQEDDERVQAWTETIDTVIPVFQDVKEHWDKL 545 Query: 286 -------LGEPGYRGN--------LR--------------ELLANPQIQRAFLLLDDTLE 316 +GE G GN LR E + ++ R +D + Sbjct: 546 FELLYAFVGESGEAGNDNGQAVCRLRSDTPPKGWDDVLTIENNVHTELSRVVKTVD---K 602 Query: 317 LCYDVA-----KLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTS----RH 367 + D+ + G L+ T + L+ ++ Q YW E ++ R Sbjct: 603 MATDIKDRLDDQSIQGLITDLNGVVRDLTRVKDDLRTFLKMEQNSEVYWIEASTTYRYRS 662 Query: 368 FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE------SLL 421 L P+ V+ + ++ S I TSATLSV+ + +LG+E E ++ Sbjct: 663 VHLYAVPVDVSKQLQQYFFDVKDSIILTSATLSVHKSFQYAEEQLGLEGFEENNRLKTVQ 722 Query: 422 LPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIE----ANNGRCFMLCTSHAMM 477 LPSPF+Y QAL+ + RN P Q +ML + GR +L TS+ M+ Sbjct: 723 LPSPFNYREQALVIIPRNFPTLKGSAGDPQFISMLVSSLADSAVETKGRMLVLFTSYRML 782 Query: 478 RDLAEQFRATMT---LPVLLQGETS--KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTL 532 + + E + + + VL QG S + +L ++F +L+ TSSFWEGVD+ G+ L Sbjct: 783 KQVYEPLKEALMGSGIQVLGQGIDSGNRTKLTRRFTQQPETVLLGTSSFWEGVDIPGEAL 842 Query: 533 SLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRG 592 + + I +LPF P+ PL++A+ E + + +PF ++ +P AVI KQG GRL+R A D+G Sbjct: 843 TCLAIVRLPFQPPNHPLVEAKSELLQKQKQNPFMKLSIPQAVIRFKQGFGRLVRTAKDKG 902 Query: 593 VLVICDNRLVMRPYGATFLASLP-PAPRTRDIARAV 627 +++I D R++ YG FL SLP P T I + V Sbjct: 903 IVIIYDTRVIDTYYGKHFLYSLPGPKIETMHIDQMV 938 >UniRef50_C7QD23 Helicase c2 n=3 Tax=Actinomycetales RepID=C7QD23_CATAD Length = 706 Score = 274 bits (701), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 220/700 (31%), Positives = 328/700 (46%), Gaps = 95/700 (13%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 TDD P A G + R Q MA AV +++ L+V+AGTGTGK+ AYL PAL Sbjct: 13 TDDLTPLLDAAVEALGGQTRPGQIAMAKAVAASLDDRVHLLVQAGTGTGKSLAYLVPALA 72 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKAL----KYTGNVALLKGRSNYLCLERLEQQA- 116 K+VI++T + ALQ QL + DLP ++ A+ K ALLKGR+NY+CL ++E A Sbjct: 73 HHKRVIVATATLALQRQLVAHDLPRLAAAITPLIKREPAFALLKGRNNYVCLNKVEGGAA 132 Query: 117 -----------LAGGDLPVQILSDVILLRSWSNQTVDGD---ISTCVSVAEDSQAWPLVT 162 LA G L ++L +R W +T GD +S VS +AW V+ Sbjct: 133 EDPGQDVLFDPLAVGKLGAEVLR----VREWVEETESGDRDDLSPGVS----DRAWAQVS 184 Query: 163 STNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVM 222 + CLGS C ++DCF +A++ A ADVVV NH L + G +++PE D + Sbjct: 185 VSARECLGSKCQFFEDCFAEQAKELARSADVVVTNHALL---AIAAMDGDVQVLPEHDAV 241 Query: 223 IFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDF 282 I DEAH+L + + S ++ +L A + +RT D + A LA + DF Sbjct: 242 IVDEAHELVNRVT-----SAATGELTKTAVE-RAHHRT---DKFVKEATAANLAVATLDF 292 Query: 283 RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLY 342 L E G + L ++ A + L D + G +D A ++A Sbjct: 293 TEAL-ENTPEGRFQRGLPE-ELGMALVALRDASRSALTELSKNKGGDLDMDGARKQARAA 350 Query: 343 RTRLKRLKEINQPGYS---YWYECTS----RHFTLALTPLSVADKFK-ELMAQKPGSWIF 394 + ++ E G W E + ++ TL + PL + + + ++ A+ P + Sbjct: 351 TEAVHQVAERVLEGAEQDVVWLERSEFKGIKNSTLKIAPLGIENLLRYKMFARTP--VVL 408 Query: 395 TSATLSVNDDLHHFTSRLGIEQAE------------------------------------ 418 TSATL + D +G+ E Sbjct: 409 TSATLKLGGDFTGVAGSVGLHGTERVELDFKPELPEEIYDAAVKLLREGDSDGEEFLDTV 468 Query: 419 --------SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFML 470 +L + SPFDY +Q +L V R+L + G ML +++ GR L Sbjct: 469 QNLPQYWRALDVGSPFDYPKQGILYVARHLDPPGRDGIRDDQLDMLADLMDNAGGRTLGL 528 Query: 471 CTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGD 530 +S + AE+ R + LP+L QGE S +LL++F L T S W+GV+V G Sbjct: 529 FSSMRAAQTAAEKLRTKIDLPILCQGEDSLAELLRKFAEDPETCLFGTLSLWQGVNVPGA 588 Query: 531 TLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADD 590 +L LV+ID++PF PDDP+ AR E GG+ F V A + L QG GRLIR DD Sbjct: 589 SLQLVVIDRIPFPRPDDPVSAARTEAVGRSGGNGFMAVSASHAALLLAQGAGRLIRAIDD 648 Query: 591 RGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 +GV+ + D+RL +PYG+ AS+P +T D R ++ L Sbjct: 649 KGVVAVLDSRLATKPYGSFLRASMPAFWQTDDTERVLKSL 688 >UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0D2_9BACT Length = 965 Score = 273 bits (699), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 208/686 (30%), Positives = 326/686 (47%), Gaps = 93/686 (13%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---- 60 F DG + + + G++ RE Q QM AV ++ G LVVEAGTG GK+ AYL PA+ Sbjct: 272 FGTDGPIGRELRGYEVREQQLQMLRAVGDSLMGGVHLVVEAGTGVGKSLAYLTPAVYFAV 331 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 ++V++ST +K LQ+QL+ +D+P + + L +VALLKGR NY+C R Q G Sbjct: 332 ENGERVVVSTNTKNLQEQLFLKDVPFLERVLDIDFSVALLKGRGNYICQARWRQVLEKG- 390 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 L S ++ + W +T GDIS + + W +++ CLG CPM + C+ Sbjct: 391 -LSSSERSQLLPVALWEQETRSGDISENAAFRQYGYVWNRISADGGPCLGQKCPMRETCY 449 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 ++KARK + A +V+VNH L +D GE +I DEAH + +A+++ G+ Sbjct: 450 LLKARKASQAAHLVIVNHSLLFSDTEADNRILGEY----SYLICDEAHNMEQVATEHLGK 505 Query: 241 SLS---SRQLL------------DLAKDITIAYRTELKDTQQLQKCADRLAQ-------- 277 + +R +L DL + + T+ + +RLA Sbjct: 506 RSNVWRARAMLDNLYRNEGGPSGDLGEVMGALSGTDGALLESATAGVERLASDVTAASAA 565 Query: 278 --------SAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLS-LGR 328 +A+ L G G LR P LL++ EL +A LS + R Sbjct: 566 VETFFTALAARHIDLNDGREVEFGKLRYRQEAP----VSALLEE--ELAGVLAALSTVAR 619 Query: 329 SA------LLDAAFERA-------TLYRTRLKR-------LKEINQPGYSYW-------- 360 A + D+ +RA T + R++ + E PG +W Sbjct: 620 GAESVADLITDSELDRAESFVQNLTFHAARVREFAADLEYVAEAADPGSVFWLDVRTFRD 679 Query: 361 -YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE---- 415 +EC R P+SVA+ + + + S I TSAT++V+ R+G++ Sbjct: 680 VFECELRS-----APVSVAEMMGDFLYSRVDSLIATSATMTVDGSFDFVMERMGLDLIPD 734 Query: 416 -QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSH 474 + +L + SP+DY Q++ V LPQ + G + ++ ++ + E G +L T+ Sbjct: 735 WKVLTLDVGSPYDYDAQSIAVVAGYLPQPSSSGFNQTVSRLVVKLAERAQGGTLVLFTAR 794 Query: 475 ----AMMRDLAEQFRATMTLPVLLQGE-TSKGQLLQQFVSAGNALLVATSSFWEGVDVRG 529 A+ + + + + L VL QG + LL+QF +++L+ATSSFWEGVDV G Sbjct: 795 SALDAVFKSVLDPLTSRGKL-VLAQGHGGASSALLEQFAREVDSVLLATSSFWEGVDVPG 853 Query: 530 DTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDAD 589 +L ++I KLPF P DP+++A E G + F +P I L+QG GRLIR Sbjct: 854 RSLEQLVIVKLPFPVPRDPVVEAHCERYEADGENSFGRYMIPRTAIRLRQGFGRLIRSTT 913 Query: 590 DRGVLVICDNRLVMRPYGATFLASLP 615 D G ++ D+RL R YG L LP Sbjct: 914 DSGAVIFLDSRLSTRAYGERLLEQLP 939 >UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2 Tax=Exiguobacterium RepID=B1YHQ6_EXIS2 Length = 937 Score = 272 bits (695), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 211/681 (30%), Positives = 336/681 (49%), Gaps = 93/681 (13%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----LRAKKKVIIST 70 PG++PR Q +M V Q++++ PL+VEAGTGTGK+ YL PA + + +I+ST Sbjct: 252 FPGYEPRTGQLEMMRHVYQSLDQETPLLVEAGTGTGKSLGYLVPAAHYAIEHETPIIVST 311 Query: 71 GSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 + LQ+QL++RDLP + + + ++ LLKGRSNY+ L + E L+ + P Sbjct: 312 HTIQLQEQLFARDLPLLRQLFEAPVDITLLKGRSNYMDLRKFEF-FLSETEEPYNFTLAK 370 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQA----WPLVTSTNDNCLGSDCPMYKDCFVVKARK 186 +L W QT GD+ +Q L+ S + + LG P Y F A + Sbjct: 371 AILLVWLTQTETGDLEEVSLPGGAAQGNIAIKQLIQSDSQSQLGRFDPWYSRDFFHHAVR 430 Query: 187 KAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL---- 242 +A A ++V NH L +D + E+G ++P+ +I DEAHQ+ ++AS +FG Sbjct: 431 RAKQATIIVTNHALLFSD-IQYEAG---VLPKGCPLILDEAHQIEEVASHHFGLVFDGHS 486 Query: 243 -----------SSRQLL----------DLAKDITIAYRTELKDTQQLQKCADRLAQSAQD 281 S ++LL DL + + T + +L + AD L Q Sbjct: 487 FDRIFRQLGFSSDKKLLTRLISLSDQYDLTELVEAHSETIDETLTKLLEEADGLLTIIQA 546 Query: 282 FRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAK-----LSLGRSAL--LDA 334 + L+L R RE + +R LD ++ + AK L R A+ + Sbjct: 547 YGLELAS---RKERREGRVTVRFKR----LDQSMRAVQESAKRVELVLRRLRQAIRAIHK 599 Query: 335 AF----------ERATL--YRTRLKRLKEINQPGYSY----------WYECTSRHFTLA- 371 F ER+ + +T + +L+E+ Q + W E T+++ L Sbjct: 600 LFHDQREHMSYRERSVVADLKTVIGQLEEVEQAIFETMLAPHDETVSWIETTAKNRKLTR 659 Query: 372 --LTPLSVADKF-KELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES--LLLPSPF 426 P+ ++++ +E+ +++ + I TSATL+V++ RLG+ + E+ ++PSPF Sbjct: 660 IYTQPIDISNRLHREVFSKR--TCILTSATLTVSNKFQFIEQRLGLSELETRRFIVPSPF 717 Query: 427 DYSRQALLCVLRNLP---QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQ 483 Y+ + L + +LP Q + +A + I E GR +L TS+ M+R + Sbjct: 718 GYAEKVRLMIPTDLPLLQDVPQATYSEVIADAIIRIAEVTEGRMLVLFTSNEMLRQTHDA 777 Query: 484 FRATMTLP----VLLQGET--SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 + M LP +L QG T S+ +L++QF +L T+SFWEGVDV GD LS ++I Sbjct: 778 TK--MALPERFTLLSQGITQGSRQRLMKQFKQLDACILFGTASFWEGVDVPGDDLSCLVI 835 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 +LPF PD P+++AR E +G F E LP A+I KQG GRLIR +DRGV+ + Sbjct: 836 VRLPFAPPDQPIVQARSEQIEQQGKSSFFEYSLPQAIIRFKQGFGRLIRTTNDRGVVFVF 895 Query: 598 DNRLVMRPYGATFLASLPPAP 618 D R+ YG F+ SLP P Sbjct: 896 DRRIETTRYGKRFVTSLPNVP 916 >UniRef50_A8LYP2 Helicase c2 n=13 Tax=Actinomycetales RepID=A8LYP2_SALAI Length = 699 Score = 270 bits (691), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 221/649 (34%), Positives = 303/649 (46%), Gaps = 70/649 (10%) Query: 13 KAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGS 72 A+PG R Q++M A+ A+ + L+V+AGTGTGK+ AYLAPAL V++ST + Sbjct: 56 NAVPGGAARPGQQEMTTAIEAAVSAREHLLVQAGTGTGKSLAYLAPALTVDGPVVVSTAT 115 Query: 73 KALQDQLYSRDLPTVSKA----LKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILS 128 ALQ QL DLP ++ A L A+LKGR +YLCL RL+ A + P L Sbjct: 116 LALQSQLVDHDLPRLADAVEPLLGRRPTFAVLKGRHHYLCLARLDN---ATEEEPGDTLF 172 Query: 129 D-------------------VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCL 169 D V LR W+ +T GD + D QAW LV+ C+ Sbjct: 173 DQPTPSGTTWLGEAGRLGRQVQRLRDWAEKTDTGDRDE-LDPGVDDQAWRLVSMPARECV 231 Query: 170 GS-DCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAH 228 G+ CP +CF +R +A +AD+VV NH L DM+ ++P +++ DEAH Sbjct: 232 GAARCPFGAECFADASRARAREADIVVTNHSLLAVDMLAGR----HIVPPHQLLVVDEAH 287 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE 288 +L D S L +L+D + T R L+ + A+ L + + L E Sbjct: 288 ELADRVSSAAQAELVP-ELIDRS---TRRARPLLR-----PETAEALTTAGDALAVGLAE 338 Query: 289 PGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKR 348 G L L P +Q A LLD D ++G D R + L Sbjct: 339 -APAGRLTAGLPAP-LQEACTLLDAATRAALD----AIGEIKADDPDPVRKQQVKAVLDE 392 Query: 349 LKEINQPGYS------YWYE---CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATL 399 L Q W E T R L + PLSVA + + + + TSATL Sbjct: 393 LSGTAQRLLDEADHDVAWVERNDVTGRR-ALVVAPLSVAGTLATHLYED-RTVVATSATL 450 Query: 400 SVNDDLHHFTSRLGIEQA-----------ESLLLPSPFDYSRQALLCVLRNLPQTNQPGS 448 ++ LG+E +SL + SPFDY+RQ +L V +LP+ + G Sbjct: 451 TLGGRFDSVARALGLEAPAEAPVTSGPGWQSLDVGSPFDYARQGILYVAAHLPRPSASGL 510 Query: 449 ARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV 508 A L ++EA GR L +S + AE RA LPVLLQGE + L+++F Sbjct: 511 PDAAGAELLGLVEALGGRTLGLFSSRRAAQQAAELLRARTDLPVLLQGEQALPLLVRRFR 570 Query: 509 SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEV 568 ++ L S W+GVDV GD LV+ID+LPF PD+PL AR GG F V Sbjct: 571 EEQSSCLFGVMSLWQGVDVPGDACQLVVIDRLPFPRPDEPLAAARAAAVDADGGSGFAAV 630 Query: 569 QLPDAVITLKQGVGRLIRDADDRGVLVICDNRL-VMRPYGATFLASLPP 616 +P A + L QGVGRLIR DRGV+ + D+RL R YG SLPP Sbjct: 631 SVPIAAVRLAQGVGRLIRATGDRGVVAVLDSRLETARGYGPFLRRSLPP 679 >UniRef50_P64315 Probable ATP-dependent helicase dinG homolog n=11 Tax=Mycobacterium tuberculosis complex RepID=DING_MYCBO Length = 664 Score = 270 bits (690), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 219/642 (34%), Positives = 308/642 (47%), Gaps = 53/642 (8%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL-RA---KKKV 66 +A A G R Q++MA AV A E G+ LVV+AGTGTGK+ AYL PA+ RA V Sbjct: 15 IAVAALGGTRRRGQQEMAAAVAHAFETGEHLVVQAGTGTGKSLAYLVPAIIRALCDDAPV 74 Query: 67 IISTGSKALQDQLYSRDLP----TVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL 122 ++ST + ALQ QL RDLP +++ AL ALLKGR NYLCL ++ A Sbjct: 75 VVSTATIALQRQLVDRDLPQLVDSLTNALPRRPKFALLKGRRNYLCLNKIHNSVTASDHD 134 Query: 123 ----------PVQILS---DVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCL 169 PV + + DV L +W++ TV GD D ++W V+ + CL Sbjct: 135 DERPQEELFDPVAVTALGRDVQRLTAWASTTVSGDRDDLKPGVGD-RSWSQVSVSARECL 193 Query: 170 G-SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAH 228 G + CP +CF +AR A ADVVV NH L D V + + ++PE +++ DEAH Sbjct: 194 GVARCPFGSECFSERARGAAGLADVVVTNHALLAIDAVAESA----VLPEHRLLVVDEAH 249 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE 288 +L D + L+S L A+ IT + K TQ+LQ + + + D R Sbjct: 250 ELADRVTSVAAAELTSATLGMAARRIT--RLVDPKVTQRLQAASATFSSAIHDAR----- 302 Query: 289 PGYRGNLRELLAN--PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRL 346 PG L + +A ++ A ++ D S+ A T R Sbjct: 303 PGRIDCLDDEMATYLSALRDAASAARSAIDTGSDTTTASVRAEAGAVLTEISDTASRILA 362 Query: 347 KRLKEINQPGYSYWYECTSRHFT----LALTPLSVADKFKELMAQKP---GSWIFTSATL 399 I W E H + L + PLSVA EL+A + + + TSATL Sbjct: 363 SFAPAIPDRSDVVWLEHEDNHESARAVLRVAPLSVA----ELLATQVFARATTVLTSATL 418 Query: 400 SVNDDLHHFTSRLGIEQA---ESLLLPSPFDYSRQALLCVLRNLPQTNQ--PGSARQLAA 454 ++ + G+ L + SPF +++ +L V +LP + GSA QL Sbjct: 419 TIGGSFDAMATAWGLTADTPWRGLDVGSPFQHAKSGILYVAAHLPPPGRDGSGSAEQLTE 478 Query: 455 MLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNAL 514 + +I A GR L +S R E R ++ PVL QG+ S L+++F + Sbjct: 479 IAE-LITAAGGRTLGLFSSMRAARAATEAMRERLSTPVLCQGDDSTSTLVEKFTADAATS 537 Query: 515 LVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAV 574 L T S W+GVDV G +LSLV+ID++PF PDDPLL AR RGG+ F V A Sbjct: 538 LFGTLSLWQGVDVPGPSLSLVLIDRIPFPRPDDPLLSARQRAVAARGGNGFMTVAASHAA 597 Query: 575 ITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPP 616 + L QG GRL+R DRGV+ + D+R+ YG ASLPP Sbjct: 598 LLLAQGSGRLLRRVTDRGVVAVLDSRMATARYGEFLRASLPP 639 >UniRef50_B1ZV97 Helicase c2 n=2 Tax=Opitutaceae RepID=B1ZV97_OPITP Length = 698 Score = 269 bits (688), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 221/665 (33%), Positives = 330/665 (49%), Gaps = 73/665 (10%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----AL 60 FA G L A+ + R Q QM AV A PL+ EAGTG GK+ AYL P A+ Sbjct: 28 FAEGGWLQDAL-QLEHRPEQEQMGRAVAAAFRDDAPLLFEAGTGVGKSLAYLVPGILHAI 86 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVA--------LLKGRSNYLCLERL 112 +++I+ST + +LQ+QL ++DLP + + +A +L G+SNYLC RL Sbjct: 87 DQSRQLIVSTHTISLQEQLETKDLPICRRLFRSNPALARYADFKATVLVGKSNYLCTTRL 146 Query: 113 EQQALAGGDLPVQILSDVI-LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGS 171 L D + + +W+ +T G + + + W +V + + +C Sbjct: 147 AHALADRATLFADAEYDELQRIAAWAGKTETG-LRHELRPPPRPEVWDVVNADSSSCSRK 205 Query: 172 DCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGF----------GELIPEADV 221 C K CF +AR + A+V+VVNH L A ++ G G L P+ D Sbjct: 206 HCDCEK-CFYQRARARLRAANVIVVNHALLFA--LINAGGAQAHGATTDARGVLFPD-DF 261 Query: 222 MIFDEAHQLPDIASQYFGQSLSS-------RQLLDLAKDITIAYRTELKDTQQLQKCADR 274 ++ DEAH +PD+A++ FG SLSS + L + + + + QQL D Sbjct: 262 VVLDEAHTVPDVATENFGLSLSSYGVERALKYLYNPRTQRGLLRKRGGAEAQQL--VLDA 319 Query: 275 LAQSAQDFRL---QLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSA- 330 L S Q F L P R ++ + + A LLD L + + LG+ A Sbjct: 320 LDASRQFFDFIANSLLTP------RPVVRVREPEAAEPLLDGPLTALHRL----LGKLAD 369 Query: 331 LLDAAFERATLY--RTRLKRLK-------EINQPGYSYWYECTSRH---FTLALTPLSVA 378 LD ER L + R+K L+ + PG+ YW E + R TL P+ VA Sbjct: 370 KLDEGRERDELLEQKLRIKSLQAGVTEWLTLGDPGHVYWAERSGRKQTIVTLRSAPIDVA 429 Query: 379 DKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLR 438 + ++ + S + TSATL++ ++ F +R+G + A ++ + SPFD+ + V Sbjct: 430 PELRQHLFGCNTSVVCTSATLAMGGEIAPFAARIGADDARAVAVKSPFDFEHHMRVYVAT 489 Query: 439 NLPQTNQPGSAR----QLAAMLRPIIEANNGRCFMLCTSHAMMRDLA---EQFRATMTLP 491 ++P + P AR L +R E G +L TS+A MR +A E P Sbjct: 490 DVPLPS-PQEARLALDALTDYIRFCTERVRGGSLVLFTSYADMRAIATTLEPVYRAAGRP 548 Query: 492 VLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL 550 ++QG E S+ +L QQ GNA+L T SFW GVDV GD L+ VII +LPF P P+ Sbjct: 549 FMMQGAELSRTELAQQMRHLGNAVLFGTDSFWTGVDVPGDALAQVIITRLPFDPPTHPIT 608 Query: 551 KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATF 610 +AR + R RGG+PF+E+ LPDA+I +QGVGRLIR A DRG++ I D+R++ + YG F Sbjct: 609 EARCDHIRDRGGNPFNELTLPDALIKFRQGVGRLIRTATDRGLITILDSRVLAKSYGRLF 668 Query: 611 LASLP 615 + LP Sbjct: 669 VECLP 673 >UniRef50_B2S179 ATP-dependent helicase, DinG family n=4 Tax=Borrelia RepID=B2S179_BORHD Length = 685 Score = 267 bits (683), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 187/659 (28%), Positives = 312/659 (47%), Gaps = 75/659 (11%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIIST 70 I GF R Q +M +++A E LV+EA TGTGK+ AYL A+ + ++KVIIST Sbjct: 15 IKGFVKRNTQLRMIKKISKAFENENFLVIEAPTGTGKSLAYLIAAIDFIQKTQEKVIIST 74 Query: 71 GSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQ--QALAGGDLPVQILS 128 S LQ+QL +D+ T+ K + + ++KG NYLCL RLE+ + L + L Sbjct: 75 ASINLQEQLIKKDIETLEKLIPFKMRFGVIKGMRNYLCLRRLEELEKNLLTYTFNKKHLE 134 Query: 129 DVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKA 188 +I W+ T GD + D Q W V+++ + C G CP CF KARKK Sbjct: 135 ALIY---WTQNTKTGDRDELHFI--DEQIWEEVSASPETCSGITCPDENKCFFKKARKKI 189 Query: 189 MDADVVVVNHHLFLADMVVK--------------ESGFGEL---IPEADVMIFDEAHQLP 231 ++ D+++ NHHL L D+ +K E + E+ +P +I DEAH L Sbjct: 190 LECDIIITNHHLLLNDLYIKNEILTEKENYENGSEKNYEEINLILPNVKNIIIDEAHYLE 249 Query: 232 DIASQYFGQSLSS---RQLLDL------AKDITIAYRTELKDTQQLQ-KCADRLAQSAQD 281 + A F ++ S +Q+ ++I AY+ + L + + + + +D Sbjct: 250 EAARTLFSKNFSRIGIKQIFTKIDKIIKKQNINGAYKKNFEIETMLSFENVEYIIKIQKD 309 Query: 282 FRLQLGEPG-YRGNLRELLANPQIQRAFLLLDDTL--ELCYDVAKLSLGRSALLD----- 333 F P YR + N + F + T + Y++ + ++++ Sbjct: 310 F------PSIYR------ITNDTHKTDFYIRIKTHLQNIIYNLENYKVSITSIIQNMENK 357 Query: 334 -AAFERATL-----YRTRLKR--LKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELM 385 A E L Y+ L + + E + +W E + + + + ++M Sbjct: 358 TAKIELERLIKNIEYKESLIKNFISENQYDNFCFWIENKKNIPIFKTSGIYLGPELNKIM 417 Query: 386 AQKPGSWIFTSATLSVNDDLHHFTSRLGI----EQAESLLLPSPFDYSRQALLCVLRNLP 441 ++ IFTSATL +N +F ++ G+ + E LP F Y +++L V ++ Sbjct: 418 YKRVKRIIFTSATLMINQSFSYFINQTGLNLINQDIEMEKLPYSFPYKEKSILTVTSDIE 477 Query: 442 QTNQPGS-ARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQGE 497 N+ Q ++ ++ N G +L TS + + + + + + + +QGE Sbjct: 478 DPNKAEEFLNQSIQYIKELVILNKGGTLILLTSFKSLEYIGKNIKDFLRENNINLFIQGE 537 Query: 498 TSKGQLLQQFV-SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMED 556 K +L+ F S ++L+ +FWEG+D++GD L++VII KLPF +P DP+L A+ Sbjct: 538 LPKHELINSFKKSPKKSVLIGMKNFWEGIDIKGDKLTMVIIPKLPFQTPSDPILIAKNAL 597 Query: 557 CRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 + F + LP A++ KQG GRLIRD+ D G++V D R+ + YG FL SLP Sbjct: 598 ATKSNENFFTQETLPQAIMKFKQGFGRLIRDSKDYGIIVCFDKRIFEKTYGKLFLQSLP 656 >UniRef50_A7BD43 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD43_9ACTO Length = 646 Score = 266 bits (680), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 215/648 (33%), Positives = 311/648 (47%), Gaps = 50/648 (7%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR--AKKKV--IISTGS 72 G PRE Q M A+E Q L+V+AGTGTGK+ YL P L A V ++ST + Sbjct: 21 GGSPREGQASMCAEGAAALEDRQHLLVQAGTGTGKSVGYLVPLLTHCAMNGVRGVVSTAT 80 Query: 73 KALQDQLYSRDLPTVSKAL-KYTG---NVALLKGRSNYLCLERLEQQALAGGDL------ 122 ALQ Q+ +D P V A+ TG VA+LKG SNY CL +L+ G L Sbjct: 81 LALQRQILVKDAPVVVDAVASATGARLKVAVLKGWSNYACLHKLDGGYPTEGTLFEDHDM 140 Query: 123 ---PVQILSDVIL-LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 P L IL +R W ++T GD V D +AW + CLG CP+ + Sbjct: 141 SVGPTGELGKEILRIREWISETTTGDRDDLVPGVSD-RAWRHASVAKPECLGKHCPLIDE 199 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYF 238 CF AR +A DADVVV NH LF + G GEL E D ++ DEAH+L D Sbjct: 200 CFAQAARLEAADADVVVTNHSLF----GINACGEGELFGEYDAVVIDEAHELADRVRSQA 255 Query: 239 GQSLSSRQLLDLAKDITIAYRTELK-DTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRE 297 L+ ++ +A+ + R+ L D+ L++ L + L E YR + Sbjct: 256 AADLTVARVSRVARSL----RSNLSIDSTDLEEAGAGLGAAMSPLEEGLLE--YRPS--- 306 Query: 298 LLANPQIQRAFLLLDDTLE-LCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPG 356 + A ++LD ++V++ +A L A L ++ +Q Sbjct: 307 -----ALVDAMIVLDGAARRASHEVSEAQGEPAAKLLARAAIDELIGALDAWGRDPDQS- 360 Query: 357 YSYWYECTSRHFTLALTPLSVADKFK-ELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE 415 +Y + S + L + PL V+ + ++P I TSATL++ + +++G+ Sbjct: 361 IAYITKDESDNARLTVGPLDVSAAIGGNGIGERPA--ILTSATLAIGGNFDFMAAQVGMA 418 Query: 416 QA----ESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLC 471 + + + SPFD+ RQ + V +LP + G + +L L + +A+ G L Sbjct: 419 VSGVPWHGIDVGSPFDHGRQGIRYVATHLPLPGRDGPSEELLDELVELAQASGGGMLALF 478 Query: 472 TSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDT 531 S + R L V LQGE + QL+Q+F ++ LV T S W+GVDV G Sbjct: 479 ASRRGAMAGGQALRERTDLTVYLQGEETLAQLIQRFREERDSCLVGTMSLWQGVDVAGAA 538 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 LV+IDK+PF PDDP+ +AR D RGG+ F V L A + + QGVGRL+R DDR Sbjct: 539 CRLVVIDKIPFPRPDDPVSRARSMDVERRGGNGFVSVSLTHAALMMAQGVGRLLRSTDDR 598 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAPRTRD---IARAVRFLAIPSSR 636 GV+ I D R+V + YG + SLP T D + A+R LA S R Sbjct: 599 GVVAILDPRVVTKRYGGFIMRSLPAMWPTTDPEVVRGALRRLAKGSDR 646 >UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Bacillales RepID=A8VXY5_9BACI Length = 935 Score = 265 bits (678), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 204/688 (29%), Positives = 323/688 (46%), Gaps = 93/688 (13%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL- 60 TD + + ++IPGF+ R Q M V + Q +VEAGTGTGKT AYL PA+ Sbjct: 237 TDIIENEELMKQSIPGFELRSTQMDMMKFVEDVFKHDQIGLVEAGTGTGKTLAYLIPAVI 296 Query: 61 ---RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQ-A 116 + + V+IST + LQ Q+ +++ + + + +LLKGR +YLCL++LE A Sbjct: 297 HAVKHDQPVVISTETIQLQSQMLNKEWAVIKDIFPFPVHASLLKGRGHYLCLQKLENLLA 356 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 D + ++ LL W +T GD+ + + + W V+S +C CP + Sbjct: 357 EDTNDHYDRAVAKAQLL-IWILETDTGDVEEVNLASTNYRFWMDVSSDGISCTTPKCPWF 415 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 + +A+++A DAD++V NH L L D+ + ++IP D +I DEAH L D A++ Sbjct: 416 TRDYYQRAKQQARDADIIVTNHSLLLTDIRLSH----QIIPSYDSLILDEAHHLEDTATR 471 Query: 237 YFGQS---LSSRQLLD-LAKD-----ITIAYRTELKDT-----QQLQKCADRLAQSAQDF 282 FG +S QL++ LA D ++ A +L + Q+LQ+ ++ L + Sbjct: 472 QFGHQQDYISVIQLVNALANDEQQSFLSGALYKKLSSSLREKYQELQRISESLHERWNQL 531 Query: 283 RLQLGEPGYRG----------------------------------------NLRELL--- 299 ++L E G G + R+LL Sbjct: 532 FMELHEYGTVGKAEKADTSRRSKVIAMDDHTWKPVQEAIQETDGAFRHLITSFRKLLFEI 591 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359 N ++ +L ++LE D+ LS A D E T Y L Sbjct: 592 ENEADEKGYL---NSLER--DIENLSTASQAFED---EYETFYH-----LYHSQDEKQVI 638 Query: 360 WYECTSR----HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE 415 W E R T+ P+ V++ + + I TSAT++V + R G+ Sbjct: 639 WMELEERGPRQSITIRSAPVDVSETLADQLFSSKKRVILTSATMTVKSSFDYVIERFGLT 698 Query: 416 QAESLL--LPSPFDYSRQALLCVLRNLPQ---TNQPGSARQLAAMLRPIIEANNGRCFML 470 + + LPSPF Y +Q L V ++P T+ A A + + A GR +L Sbjct: 699 DFDLAVKQLPSPFQYEKQVGLFVPEDMPMIQGTSDRAYAEACAYHIFRLSGATEGRMLVL 758 Query: 471 CTSHAMMRDLAEQFRATM--TLPVLLQG--ETSKGQLLQQFVSAGNALLVATSSFWEGVD 526 TS+ M+R R + T ++ QG S+ +L++ F ++L TSSFWEGVD Sbjct: 759 FTSYDMLRKTYYAVRDMLDDTYMLIAQGVQTASRQKLIKHFQQFDRSILFGTSSFWEGVD 818 Query: 527 VRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIR 586 + GD LS +++ +LPF+ P+DP+ +AR E + +G + F + LP AV+ KQG GRLIR Sbjct: 819 IPGDNLSAIVMVRLPFSPPNDPVFQARSEAVKEQGKNAFMHLALPQAVLRFKQGFGRLIR 878 Query: 587 DADDRGVLVICDNRLVMRPYGATFLASL 614 + DRG +++ D R+V YG F SL Sbjct: 879 SSTDRGAVIVLDRRMVTTRYGHFFAKSL 906 >UniRef50_D1C098 Helicase c2 n=10 Tax=Actinomycetales RepID=D1C098_XYLCX Length = 696 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 231/681 (33%), Positives = 324/681 (47%), Gaps = 99/681 (14%) Query: 24 QRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR----AKKKVIISTGSKALQDQL 79 Q MA+ V +AI++G+ L+V+AGTGTGK+ YL PA+R A ++VI+ST + ALQ Q+ Sbjct: 40 QHAMALEVVEAIDEGRHLLVQAGTGTGKSLGYLVPAVRHAVVADERVIVSTATLALQRQV 99 Query: 80 YSRDLPTVSKA----LKYTGNVALLKGRSNYLCLERL----------------------- 112 +RDLP V+ A L +ALLKG NYLCL + Sbjct: 100 ITRDLPLVADAVAPQLPRPPRIALLKGWHNYLCLHKTGGGYPVDDATLFDLPGITPGESA 159 Query: 113 -EQQALAGG-----DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 E A A G D + V L +W+++T GD V D +AW V+ T+ Sbjct: 160 TEHPAEAPGRARREDGAASLADQVRRLHAWAHETDSGDRDELVPGVPD-RAWRQVSVTSL 218 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDE 226 CLG CP+ +CF +AR A +ADVVV NH + + + SG ++PE V++ DE Sbjct: 219 ECLGQRCPLLAECFPERARAAAREADVVVTNHAM----LGIAVSGSPGVLPEHGVVVVDE 274 Query: 227 AHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRL----AQSA--- 279 AH+L D A+ LS L + +A R +T L A L AQ+ Sbjct: 275 AHELADRATSAATVDLS---LTTIEHAARLARRHAAAETTALDAAAQELGSLIAQAPAGS 331 Query: 280 ------QDFRLQLGEPGYRGNLRELLA--NPQIQRAFLLLDDTLELC-------YDVAKL 324 +D R +G R LRELL P + D ++ Y+VA+ Sbjct: 332 FPLGLPEDLRTAVG--AVRDALRELLTRTKPDPPQGGAAPDGGAKMAQSAVLQVYEVAE- 388 Query: 325 SLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKE- 383 R A D++ + L+ +R + PG + W + SR L PL VA + Sbjct: 389 ---RMAAEDSSSD--VLWCSRPG-----DGPG-AGWGDGVSR---LHAAPLHVAGLIRAG 434 Query: 384 LMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE-------SLLLPSPFDYSRQALLCV 436 L+A+ G IFTSATL++ LG+ + + + + SPFDY RQ +L V Sbjct: 435 LLAETTG--IFTSATLALGGQFDAVAGSLGLGRTDDDGGRWRGVDVGSPFDYPRQGILYV 492 Query: 437 LRNLPQTNQ-PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQ 495 R+LP + P + QL + +IEA GR L +S +AE R + +PVL Q Sbjct: 493 ARHLPAPGRDPATDAQLDEIAG-LIEAAGGRTLGLFSSRRAANAVAEAMRERLDVPVLAQ 551 Query: 496 GETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARME 555 G+ L++QF L T S W+GVDV G LVIID++PF PDDP+ AR Sbjct: 552 GDDQLPTLVRQFAQDPATCLFGTISLWQGVDVPGPACQLVIIDRIPFPRPDDPVKAARAR 611 Query: 556 DCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 GG+ F V A + L QG GRLIR +DRGV+ + D RL YG S+P Sbjct: 612 AVEKAGGNGFMAVSATHAALLLAQGAGRLIRATEDRGVVAVLDPRLATARYGTFLTRSMP 671 Query: 616 ---PAPRTRDIARAVRFLAIP 633 P R + A+R LA P Sbjct: 672 NFWPTTDGRIVREALRRLATP 692 >UniRef50_C0W0F4 ATP-dependent DNA helicase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0F4_9ACTO Length = 640 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 206/640 (32%), Positives = 318/640 (49%), Gaps = 57/640 (8%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR----AKKKVIISTGS 72 G R Q+QM V A+ + + +++AGTGTGK++ YL P ++ K++VI++T + Sbjct: 19 GGSARAGQQQMVRTVASALAEDKIALIQAGTGTGKSFGYLVPVMQRVANTKERVIVATAT 78 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE-----QQALAGGDL----- 122 ALQ Q+ +D P V++ L VA LKG +NYLCL ++E + AL DL Sbjct: 79 LALQRQILEKDAPCVNEHLPKPVKVAALKGWNNYLCLHKVEGGYAEEYALFPSDLVDFAP 138 Query: 123 --PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 +++ +R W+ QT GD D Q W V+ ++ CLGS CP+ +CF Sbjct: 139 KTSSATGKEIVRVREWAKQTDTGDRDDLKPGVSD-QVWRQVSVPSNECLGSTCPLRDECF 197 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 AR++A +A+VV+ NH A + + + ++ E D ++ DEAH L I Sbjct: 198 PALARERATEANVVITNH----AVLGIHATSENKMCGEFDALVVDEAHDLMRI------- 246 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 + S+ L L + T+++ +L +A +A + LQ E G LL Sbjct: 247 -VHSQATLRLHPGAAV---TKMRWAGRLAG----VATTAVETSLQGLEKVLEGFSEGLLR 298 Query: 301 N--PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFER-ATLYRTRLKR-LKEINQPG 356 ++Q A LLD + L LS ++ DAA ++ AT L L ++P Sbjct: 299 TRPEELQDAMRLLDTEVRLV-----LSSINTSDKDAAEKKLATGVVAELAEFLDAWDRPV 353 Query: 357 YSYWYECTSRH---FTLALTPLSVADKFK-ELMAQKPGSWIFTSATLSVNDDLHHFTSRL 412 S T R L PL V+ L ++K + + TSATL + S + Sbjct: 354 ESMITWVTQRDEDPAVLNCVPLDVSAPIAFNLFSEK--AVVLTSATLKLGGSFGPLASEV 411 Query: 413 GIEQAESLL----LPSPFDYSRQALLCVLRNLPQTNQPG-SARQLAAMLRPIIEANNGRC 467 G+ + ES L + SPFD ++Q +L V LP + G S QL +LR + EA+ G Sbjct: 412 GVYRVESELEMVDVGSPFDPAKQGILYVAAELPAPPRSGVSEEQLQTLLR-LTEASGGGM 470 Query: 468 FMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDV 527 L +S + A+ R + LPVLLQGE L+Q+F LV T S W+G+D+ Sbjct: 471 LGLFSSKRAAQQAADYLRESTDLPVLLQGEDQLSNLVQEFREDSQTCLVGTMSLWQGIDI 530 Query: 528 RGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRD 587 +G LV++D++PF P DP+++AR ++ +G +PF V L A + + QG GRL+R Sbjct: 531 KGPNCRLVVMDRIPFPVPSDPVIEARNDEAARKGQNPFQVVSLSHASLLMAQGAGRLLRS 590 Query: 588 ADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAV 627 DD+G++ + D+RL +PYG SLP T I AV Sbjct: 591 VDDQGMVAVLDSRLATKPYGMFIRKSLPQLWPTTSIEVAV 630 >UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ Length = 934 Score = 262 bits (669), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 204/677 (30%), Positives = 329/677 (48%), Gaps = 78/677 (11%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR-AKKK--- 65 +LA +P F+ RE Q+ M + A+ + ++EAGTGTGKT AYL P++ AKKK Sbjct: 249 KLALNMPKFEKRESQQIMMKEIYTALRDSRFSLIEAGTGTGKTLAYLLPSIYFAKKKEEP 308 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE---QQALAGGDL 122 VIIST + LQ Q+ +++P + K + ++ VALLKGR +YLCL + E Q+ D+ Sbjct: 309 VIISTQTVQLQQQILEKEIPLLQKIMPFSFEVALLKGRKHYLCLHKFEYALQEEEKNYDM 368 Query: 123 PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQA-WPLVTSTNDNCLGSDCPMYKDCFV 181 + ++ W QT GD +++ E + W + S + G + CF Sbjct: 369 ALTKAKILV----WLLQTETGDRDE-LNIPEGGKLLWNRICSDVHSPGGMQSNWFSRCFY 423 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ----- 236 +A+ KA+ AD+V+ NH L D +E F + +IFDEAH + + AS+ Sbjct: 424 QRAKNKALFADIVITNHALLFQDFSSEEPLFAS----CEHIIFDEAHHIEEAASRTLGEQ 479 Query: 237 ----YFGQSLSSRQLLDLAKDITIAYRTELKDTQ--------------QLQKCADRLAQ- 277 YF LS L+ ++ Y+ K Q +L+ AD L Q Sbjct: 480 FSCMYFQLVLSRLGTLETDDVLSKVYKMMKKSEQASRSTFRMVSHSLKELKFDADELFQM 539 Query: 278 -SAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLEL----CYDVAKL--SLGRSA 330 A F+ E G N ++++ L D EL YD+ KL +L + Sbjct: 540 LRAFIFKQTKQEQGISNMPLIYRYNTEVEKG-KLWDSITELTNRFVYDIRKLLTTLEKQV 598 Query: 331 -LLDAAFERATLYRT--------RLKRLKE------INQPGYSYWYECTSR---HFTLAL 372 +L + E T L+++ + + + Y W E ++ H T+ Sbjct: 599 DILQSKIEWEMHVVTGEFMHLIELLRKMAQALQLLILEKNSYVTWMETETKGTIHSTVLY 658 Query: 373 -TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPSPFDYS 429 P+ +A++F + + S IFTSATL+VND + LG+ +L +PSPF + Sbjct: 659 GQPVHIAERFADEFLTEKKSVIFTSATLTVNDSFAYIKEELGLHDFAPNTLQVPSPFRFE 718 Query: 430 RQALLCVLRNLPQTNQPGSARQLAAM---LRPIIEANNGRCFMLCTSHAMMRDLAEQFRA 486 Q L V ++P + + + ++ + I +A GR +L TS+ M+++ + Sbjct: 719 EQMKLMVSTDVPFIKKASNEEYIESVSTHIAKIAKATKGRMLVLFTSYEMLKEAYTNLKN 778 Query: 487 TMTLP---VLLQ--GETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLP 541 L +L Q S+ +L+++F ++L+ TSSFWEG+D+ GD LS ++I +LP Sbjct: 779 DEELEGYLLLTQSVNNKSRSRLIRKFQEFDKSILLGTSSFWEGIDIPGDALSCLVIVRLP 838 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 FT P P+++A+ E + +G D F ++ LP A++ KQG GRLIR + D G + + D RL Sbjct: 839 FTPPYQPMIEAKGEWLKNQGEDVFAKLALPQAILRFKQGFGRLIRTSTDTGTVFVLDRRL 898 Query: 602 VMRPYGATFLASLPPAP 618 YG FL S+P P Sbjct: 899 TSSSYGKYFLQSIPTVP 915 >UniRef50_C7NJ65 DNA helicase, Rad3 n=28 Tax=Actinomycetales RepID=C7NJ65_KYTSD Length = 765 Score = 261 bits (667), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 212/652 (32%), Positives = 310/652 (47%), Gaps = 67/652 (10%) Query: 12 AKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR----AKKKVI 67 A A G PRE Q +M V +A+ + L+V+AGTGTGK+ AYL PA+ K V+ Sbjct: 22 AVAAVGGSPREGQARMTAEVARAVNTSEHLLVQAGTGTGKSLAYLVPAVAHAVATGKPVV 81 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGN----VALLKGRSNYLCLERLEQQALAGG--- 120 ++T + ALQ Q+ RDLP V++AL+ AL+KGR+NYLC Q L GG Sbjct: 82 VATATLALQAQIVDRDLPRVAEALRSEMGRPITYALVKGRNNYLC-----QHKLLGGFPD 136 Query: 121 ---DLPV---QILSD-------VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDN 167 D V Q+ +D V+ LR W+ T GD V +AW V+ + Sbjct: 137 DDADALVSMGQVDADRSALGEEVVRLREWAQITESGDRDELVP-GVSHRAWRQVSVSARE 195 Query: 168 CLG-SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDE 226 C G S CP+ +CFV +R+ A D DV+V NH D + S ++PE D+++ DE Sbjct: 196 CFGASRCPVASECFVELSREAAKDVDVIVTNHAFLAIDAIEGRS----MLPEHDLLVVDE 251 Query: 227 AHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELK--DTQQLQKCADRLAQSAQDFRL 284 AH+L D + L+ + IA R K DT +L++ + L+Q+ Sbjct: 252 AHELVDRVTGVATDELTP-------GTVAIAARKAGKFADTDRLEEAEEALSQAL----- 299 Query: 285 QLGEPGYRGNLRELLANPQIQRAFLLLDD-----TLELCYDVAKLSLGRSALLDAAFERA 339 +P G LR L + A ++L D + +L + + + G AA + Sbjct: 300 ---DPLPEGTLRSL--PDALADALVVLRDAARGVSTDLKPEKGEKADGPQQTARAAVDEV 354 Query: 340 TLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATL 399 RL +E++ + R L + P+SVA +E + + + + TSATL Sbjct: 355 GDVAQRLLEERELDVVWVAPDGRSNQRRNVLRVAPMSVAMLLREKVFTER-TVVMTSATL 413 Query: 400 SVNDDLHHFTSRLGIEQA-----ESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAA 454 + LG+ A + + SPFDY +QA+ V +LP + G+A + Sbjct: 414 ELGGSFDALAGTLGLLGAGAPSWNGVDVGSPFDYPKQAMAYVAGHLPAPGRDGTAPEQVD 473 Query: 455 MLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM--TLPVLLQGETSKGQLLQQFVSAGN 512 + +I A GR L +S R A++ R + VL QGE L+++F + Sbjct: 474 EIEALIRAAGGRTLGLFSSMRAARAAADEMRERLGDEFEVLCQGEDQLPTLVRRFAADAR 533 Query: 513 ALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPD 572 L T S W+GVDV G LV+ID++PF PDDPL AR + GG+ F V Sbjct: 534 TCLFGTLSLWQGVDVPGSACQLVLIDRIPFPRPDDPLSSARSQAIARNGGNGFMAVSATH 593 Query: 573 AVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA 624 A + L QG GRL+R ADDRGV+ D R+V Y SLPP T+D A Sbjct: 594 AALRLAQGSGRLVRRADDRGVVAFLDPRMVTARYAGFLQKSLPPFWPTQDRA 645 >UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-related DNA helicase n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GHT3_ANOFW Length = 880 Score = 261 bits (666), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 190/628 (30%), Positives = 312/628 (49%), Gaps = 46/628 (7%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKKKVIISTGSK 73 F+ RE Q+QM V A++ Q ++EAGTG GKT AYL P A++ ++ +++ST + Sbjct: 251 FEYREGQKQMMDDVNYALQTCQHALIEAGTGVGKTMAYLLPTVFYAVKQQQPIVVSTYTL 310 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 LQ Q+ ++LP V++ + + A+LKG+ NY+ + + + L D I L Sbjct: 311 QLQKQMIEKELPRVAQLVPFPFTTAVLKGKRNYMSVRKFAR-TLKHIDTNYDIALTKCQL 369 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADV 193 W +T GD+ A + W V S + N + F V+A++KA A V Sbjct: 370 LVWLTETETGDVDELNLTAGGALFWEDVHSDDTNE--------EYDFFVRAKEKAKHAHV 421 Query: 194 VVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS---RQLLDL 250 ++ NH + D+ E + +P + +I DEAH L D+A+ +FG+ +S R L Sbjct: 422 IITNHSFVMHDLTADE----KWLPPYEQLIIDEAHHLEDVAAHFFGRHVSYEYIRLLWTR 477 Query: 251 AKDITI-----AYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQ 305 DI + A R+ L D L+ ++L QS + + L+ + R R + + Sbjct: 478 MNDIAMIHKMGALRSLLGD---LEYELNQLFQSLRHYVLRRQKGDGRIRYRFVPWKEYGK 534 Query: 306 RAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEI---NQPGYSYWYE 362 ++ + + DV +LS + + + T + L+ L+ + + W E Sbjct: 535 EWSGTIELLMRIMNDVQQLSQMINDIPKEDVKPFTTFIDTLRTLQHLLTSDDDDIVRWLE 594 Query: 363 CTSRHFTLALT----PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE 418 ++ A+T PL +A F + + + S I TSATL+ N +RLG++ Sbjct: 595 VDAKAAVNAVTVISQPLDLAHFFADQLFSRKRSVILTSATLTTNGRFSFIIARLGLDDFY 654 Query: 419 SL--LLPSPFDYSRQALLCV---LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTS 473 ++PSPF Y +QA L V L P A A + I GR +L TS Sbjct: 655 PFTRIIPSPFSYEKQAALMVPTDLPTFPSVTVEQYAEHAAQQVIRIARHTKGRMLVLFTS 714 Query: 474 HAMMRD---LAEQFRATMTLPVLLQGET--SKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 + +++ A+QF + +L QG + + +L + F A+L TSSFWEG+D+ Sbjct: 715 YELLKQTYAYAKQFNDDQFV-LLAQGVSGGNAAKLTRHFQQFEQAILFGTSSFWEGIDLP 773 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 G ++ V+I +LPF PDDP+++A+ + R +GG+PF ++ LP A++ KQG GRLIR Sbjct: 774 GSEVTCVVIVRLPFAPPDDPVMEAKSDYIRAKGGNPFYDLSLPQAILRFKQGFGRLIRTK 833 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPP 616 +DRG++ + D RL+ Y FL SLPP Sbjct: 834 EDRGIIFVFDQRLLTASYSKYFLQSLPP 861 >UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus RepID=Q5WGA7_BACSK Length = 942 Score = 259 bits (661), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 214/693 (30%), Positives = 327/693 (47%), Gaps = 97/693 (13%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----AL 60 F+ G +A+ F+ R Q+QM V A E+ ++EAGTGTGKT AYL P A Sbjct: 247 FSSSGAIARVFDSFEDRPGQKQMMKEVYAAFEEHAHALIEAGTGTGKTLAYLVPSAYFAY 306 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQ--QALA 118 KK V++ST + LQ+QL RDL ++ + + A+LKGRS+YL L + EQ Q L Sbjct: 307 SKKKPVVLSTYTIPLQEQLLQRDLRLLASIVPFPLRTAVLKGRSHYLDLRKFEQALQQLE 366 Query: 119 GGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 V + +L+ W +T GD+ WP+V S ++ LG P + Sbjct: 367 NDSYDVCLTKAQLLV--WLLETDYGDVEELNLTTGGRSFWPMVQSDPESDLGKYNPWFSR 424 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYF 238 CF ++R++A AD+++ NH L L D+V S ++P + DEAH + AS YF Sbjct: 425 CFYHRSRRQAKKADLIITNHALLLTDVVQTHS----VLPSYSHAVIDEAHHFQEAASAYF 480 Query: 239 GQSLS---------------------------SRQL-----LDLAKDITIAYRTELKDTQ 266 G + S Q+ LD AK+ + +R +DT Sbjct: 481 GLTASFLSVSFAIQRIGDDHHEYGAIARLETLGEQMKQPLALDDAKEGLVRFR---EDTD 537 Query: 267 QLQKCADRLAQSAQDFR-LQLGEPGY----------------RGNLRELLANPQI----Q 305 +L + A AQ+ +G Y +R L Q+ + Sbjct: 538 ELFRMIHVFALDAQESNATDVGRISYVYKSFSEEGMLWQAILECAMRLQLHGEQVLAALK 597 Query: 306 RAFLLLDDTLELCYDVAKLSLGRSALLD-----AAFERATLYRTRLKRLKEINQPGYSYW 360 A+ ++++ +E Y+ RS L D AAFE L + N Y YW Sbjct: 598 AAYQVVEEKVEAEYE------SRSLLADTQGAIAAFEETVQLLYELLLEYDDN---YVYW 648 Query: 361 YECTSRHFT----LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ 416 E + L P+ V+++ + K S + TSATL+VN + RLG+ Sbjct: 649 IEVEPKGAKNATYLYAKPIEVSERLADQFFAKKKSVVLTSATLTVNQSFDYQIDRLGLVD 708 Query: 417 --AESLLLPSPFDYSRQALLCVLRNLPQTNQPGS---ARQLAAMLRPIIEANNGRCFMLC 471 ++ + SPF Y++QA L + ++P P A+ +A + I E + +L Sbjct: 709 FGVKTKQIESPFSYAQQAKLLIPYDIPDVRGPDDELFAQDIAIKIWRITEVMQRKALVLF 768 Query: 472 TSHAMMRDL---AEQFRATMTLPVLLQGETS--KGQLLQQFVSAGN-ALLVATSSFWEGV 525 TS+ M++ + + L ++ QG TS + +LL+ F A A+L T+SFWEG+ Sbjct: 769 TSYDMLKKVFYYVKDLNDEGKLALIGQGVTSGSRMRLLKLFKQAEQRAVLFGTNSFWEGI 828 Query: 526 DVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLI 585 D+ G+ L +II +LPF P+ PL +A+ME + G +PF ++ LP AVI KQG GRLI Sbjct: 829 DLPGNELECLIIVRLPFAPPNLPLNRAQMERAKAEGKNPFTDLALPQAVIRFKQGFGRLI 888 Query: 586 RDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 R DRG++ + D R+V YG TF+ SLP P Sbjct: 889 RTKGDRGLIFVFDRRIVTTRYGRTFIDSLPDVP 921 >UniRef50_C5VAL7 ATP-dependent helicase n=14 Tax=Corynebacterineae RepID=C5VAL7_9CORY Length = 681 Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 205/666 (30%), Positives = 308/666 (46%), Gaps = 72/666 (10%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 G R Q M AV A+E + L V+AGTGTGK+ AYL PA+ + VI+ST + Sbjct: 15 GGATRPGQVAMTEAVATALESERHLAVQAGTGTGKSLAYLVPAVAHAQETESTVIVSTAT 74 Query: 73 KALQDQLYSRDLPTVSKALK----YTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILS 128 ALQ QL RDLP ++++L+ + + A++KGR NYLC ++ Q D P + Sbjct: 75 IALQRQLVDRDLPRLAESLEPLLDHKPSFAIMKGRQNYLCQNKVAQATALEADDPNSGDA 134 Query: 129 D----------------------VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 D + + W+N+T GD + D AW V+ Sbjct: 135 DGNAGGAQTALVDESELSWLGRHMARIYEWANETETGDRDSLEPGVPD-LAWRQVSVGAK 193 Query: 167 NCLGSD-CPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFD 225 C+G++ CP CF AR+KA D DVVV NH L D ++ + ++P+ DV+I D Sbjct: 194 ECIGANRCPFGDSCFAELARRKARDVDVVVTNHALLAVDAMLDIN----VLPDHDVVIID 249 Query: 226 EAHQLPD----IASQYFGQS---LSSR------------QLLDLAKDIT-IAYRTELKDT 265 EAH+L D +A+ G + +S+R +L+D+A++ + + Sbjct: 250 EAHELDDRITSMATTEIGVTALNMSARRAGKLGAEGRDEKLIDVAREWEQVMMSIDPGRL 309 Query: 266 QQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLS 325 L + + QD QL + R E P+ L L + L +D Sbjct: 310 TTLPEVLRPTLVALQDGLWQLQQTIGRAPEGEAANEPERHAERLSLANHLTEQHDAV--- 366 Query: 326 LGRSALLDAAFERATLYRTRLKRLKEINQPGYS------YWYECTSRHFT-LALTPLSVA 378 + +L A +L + PG + W R T L + PLSV+ Sbjct: 367 ---ARILSAFPAHPSLSPDDATSPEPATPPGSADAPEDVVWAVVDERRGTMLKVAPLSVS 423 Query: 379 DKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA--ESLLLPSPFDYSRQALLCV 436 D + + + + TSATL++ + + + G+ + L +PFD ++ +L V Sbjct: 424 DLLRSRLFDH-NTVVLTSATLTIGGNFNAMAASWGLPAGSWDHLDAGTPFDPAKSGILYV 482 Query: 437 LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQG 496 R++P + G + + + +I A GR L +S E R + VL QG Sbjct: 483 PRHVPFPGRDGLHEKTLSEMYELIMAAGGRTLGLFSSRRAAEQATESLRRRLPFDVLCQG 542 Query: 497 ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMED 556 + S G L+ +F N L T + W+GVDV G + SLVI+DK+PF PDDPLL+AR E Sbjct: 543 DDSMGALVDRFAKQENTCLFGTLTLWQGVDVPGKSCSLVIMDKIPFPRPDDPLLQARKEA 602 Query: 557 CRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPP 616 G + F EV A + + QG GRL+R DRGV+ I D RL+ + YG L SLPP Sbjct: 603 ADAAGRNGFMEVAATHAALLMAQGAGRLLRHTTDRGVVAIMDKRLIEKRYGGFLLNSLPP 662 Query: 617 APRTRD 622 RT D Sbjct: 663 FWRTTD 668 >UniRef50_D1YCN3 ATP-dependent helicase DinG n=3 Tax=Propionibacterium acnes RepID=D1YCN3_PROAC Length = 683 Score = 256 bits (654), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 220/683 (32%), Positives = 320/683 (46%), Gaps = 98/683 (14%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 G + R Q MA AV QA+ L+V+AGTGTGK+ YLAPAL +VI++T + Sbjct: 25 GGQERPGQVAMAKAVDQAMRDKLHLLVQAGTGTGKSLGYLAPALVYCVEKGAQVIVATAT 84 Query: 73 KALQDQLYSRDLPTV----SKALKYTGNVALLKGRSNYLCLERLE--------QQALA-G 119 ALQ QL +D+PT+ K L VA+LKGR+N++CL ++ Q AL G Sbjct: 85 LALQAQLAYKDIPTILDASEKVLSRRPRVAVLKGRNNHICLHKVRGSSTRTKGQDALVPG 144 Query: 120 GDLPV--------------QILSDVILLRSWSNQTVD----GDISTCVSVAEDSQAWPLV 161 DL V + ++V++LR W+ + V+ GD + A AW V Sbjct: 145 ADLVVAADDGREVEAAPESTLGAEVVMLREWAEKQVEESGLGDRDD--APAHTPLAWAQV 202 Query: 162 TSTNDNCLGSD-CPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD 220 + + CLG CP +C AR++A +AD+VV NH + D + G ++PE D Sbjct: 203 SVPANECLGVQRCPFGSECLSEAAREQARNADLVVTNHAMLAIDAL----NGGRVLPEHD 258 Query: 221 VMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKD--TQQLQKCADRLAQS 278 +I DEAH+L + ++ + LS + AK T L D L AD +A + Sbjct: 259 TVIIDEAHELVNRFTRAASKDLSPAIVTMTAKRAM----TWLDDDVGADLLNQADSMAHA 314 Query: 279 AQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYD------------VAKLSL 326 L+ PG R + Q+ + +L D + V + Sbjct: 315 -----LEAIAPG-----RVTTPDAQVIQTCAVLRDLARVAVSQLDRNDEDSREPVDAERV 364 Query: 327 GRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKE-LM 385 A + FE A +R+ + + E + ++ + PLSV +E + Sbjct: 365 QAQAAMREVFETA-------ERMVGLAAADVVWVSESEKGYRSIHVAPLSVGGLLRENVF 417 Query: 386 AQKPGSWIFTSATLSVNDDLHHFTSRLGI-----------EQAESLL------LPSPFDY 428 AQ + I TSATL + + +G+ E E+ + + SPFDY Sbjct: 418 AQS--TTILTSATLCIGGNFLAIARDVGLSPRGQIEGDAPEVFETQMGWRGVDVGSPFDY 475 Query: 429 SRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 S+Q +L V R+LP+ + G A ++ L ++ A GR L +S AE R+ M Sbjct: 476 SKQGILYVGRSLPRPGRDGIAPEVLDDLAELVWAAGGRTLGLFSSQRNAVAAAEHMRSAM 535 Query: 489 -TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 +PVL QGE L ++F + L T S W+GVD+ GDT LV+ID++PF PDD Sbjct: 536 PDIPVLCQGEGHLADLTRRFAADPRTCLFGTVSLWQGVDIPGDTCRLVVIDRVPFPRPDD 595 Query: 548 PLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 PL+ AR + GG+ F V A + L QG GRLIR ADDRGV+ + D RLV YG Sbjct: 596 PLMAARSKAVEDAGGNGFMTVSAGHAALLLAQGAGRLIRRADDRGVVAVLDPRLVTARYG 655 Query: 608 ATFLASLPPAPRTRDIARAVRFL 630 AS+PP T D AV L Sbjct: 656 NFLRASMPPFWTTTDREMAVGAL 678 >UniRef50_Q47MW9 Helicase c2:DEAD/DEAH box helicase, N-terminal n=12 Tax=Actinomycetales RepID=Q47MW9_THEFY Length = 706 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 221/671 (32%), Positives = 314/671 (46%), Gaps = 78/671 (11%) Query: 13 KAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR----AKKKVII 68 +A+ G + R+ Q MA +V AI+ + LVV+AGTGTGK+ YL PALR A V++ Sbjct: 44 RALNGTR-RDGQATMARSVAAAIDSREHLVVQAGTGTGKSLGYLVPALRHAVAANATVVV 102 Query: 69 STGSKALQDQLYSRDLPTVSKALK-YTGN---VALLKGRSNYLCLERLEQQALAGGDLPV 124 ST + ALQ+QL RDLP +++AL+ G A+LKGR NYLC RL Q A + + Sbjct: 103 STATIALQNQLIGRDLPRLTEALEPLLGRRPVYAILKGRRNYLCRYRLSQAATGPEEAEL 162 Query: 125 ---QILSD----VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD-CPMY 176 +LS V L W+ +T+ GD D AW V+ + C+G CP+ Sbjct: 163 FDPHLLSSLGRQVRRLHEWAEETLTGDRDDLTPGVSD-LAWRQVSVGANECIGPQMCPVS 221 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 DCF AR + + AD+VV NH L D V G+ L+P+ D++I DEAH+L D + Sbjct: 222 DDCFAELARAETIGADLVVTNHALLAIDAV---QGY-RLLPDHDLLIVDEAHELVDRVTS 277 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE--PGYRGN 294 LS R + AK EL + RLA++A L L + PG + Sbjct: 278 VATGVLSDRSISLAAKRAAPVCDVELTE---------RLAETADGLALMLADTPPGRLDH 328 Query: 295 LRELLANPQIQRAFLLLDDTLELCY---------DVAKLSLGRSALLDAAFERATLYRTR 345 L + LA A + D C D S R AL T R Sbjct: 329 LPDPLAT-----AVAAVRDAAHACLSALPEPPRDDPHAASARRLALAGLEEVHCTAERIL 383 Query: 346 LKRLKEINQPGYSYWYECTSRHFT-LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDD 404 L + + W+ +R L + PL+V ++ + + + + TSATL++ Sbjct: 384 LCVQQPLRDRQDVVWFARGARQTPGLRIAPLAVNRTLRQALFTE-RTTVLTSATLALGGS 442 Query: 405 LHHFTSRLGI------------EQAESLLLPS---------------PFDYSRQALLCVL 437 + G+ E AE+ PS PF+++R +L + Sbjct: 443 FDLMARQWGLGPLPDHDPAEAAEPAETTATPSAEPSPLRWRAIDVGSPFNHARSGILYIA 502 Query: 438 RNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGE 497 +LP + + + +I+A GR L +S AE+ R + P+L QG+ Sbjct: 503 THLPPPGRESLHPEYLDEMAELIDAAGGRTLGLFSSTRAAVHAAEELRERLPYPILCQGD 562 Query: 498 TSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDC 557 S G L+QQF + L T S W+GVDV G L LVI+D++PF PDDPL AR Sbjct: 563 DSTGHLVQQFAADEATCLFGTLSLWQGVDVPGPALQLVIVDRIPFPRPDDPLASARQRAI 622 Query: 558 RLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPA 617 +GG+ F EV A + L QG GRL+R D+GV+ + D RL YGA ASLPP Sbjct: 623 GAQGGNGFLEVAATHAALLLAQGTGRLLRSVHDKGVVAVLDPRLATARYGAFLRASLPPY 682 Query: 618 PRTRD--IARA 626 T D +ARA Sbjct: 683 WGTTDPQVARA 693 >UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus RepID=DING_BACSU Length = 931 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 194/668 (29%), Positives = 320/668 (47%), Gaps = 70/668 (10%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKV 66 L++ +PG++ R+ Q M V A + ++EA G GKT YL PA ++KK V Sbjct: 250 LSELMPGYEKRDGQMMMMREVADAFANREHALIEAPPGIGKTIGYLIPAALFAKKSKKPV 309 Query: 67 IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQI 126 IIST S LQ Q+ ++DLP V + A+LKG+S+YLCL + EQ D + Sbjct: 310 IISTYSTLLQQQILTKDLPIVQDLFPFPVTAAILKGQSHYLCLYKFEQVLHEEDDNYDAV 369 Query: 127 LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARK 186 L+ LL W +T GD++ + W + +D+ S + F +A++ Sbjct: 370 LTKAQLL-VWLTETNTGDVAELNLPSGGKLLWDRLAYDDDSYKRSRSE-HVIGFYERAKQ 427 Query: 187 KAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQ 246 AM +D+V+ NH L L D E + +PE+ I DEAH AS++ G+ + + Sbjct: 428 IAMRSDLVITNHSLLLTD----EGSHKKRLPESGTFIIDEAHHFERAASEHLGKRATYIE 483 Query: 247 L-LDLAKDITIAYRTELKDTQQL---------------------QKCADRLAQSAQDFRL 284 L L++ T+ + LK +QL Q +D S F + Sbjct: 484 LHTKLSRIGTLKEQGLLKKMRQLFQRNSLPVDSFFELEEWLQHVQAESDAFFSSVHSF-V 542 Query: 285 QLGEPGYRGNLRELLANPQIQ-RAFLLLDDTLE-LC---YDVAKLSLGRSALLDAAFER- 338 + +P N N + Q +++ +L D E LC + +L +S+L++ + Sbjct: 543 KRRKPKEDLNRLVFKVNKESQDKSWSILTDGAERLCSMLTHLQQLFEAQSSLMEKHLKGM 602 Query: 339 -------ATLYRTRLKRLKEINQP----------GYSYWYECTSRHFTLALT----PLSV 377 A Y+ +K L+ Q + W E ++ A+ PL Sbjct: 603 KSKTVFLADEYQRSMKGLQHYCQTLQKLFFGSDDDEAVWIEIDAKGAKNAVAIYAQPLEP 662 Query: 378 ADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPSPFDYSRQALLC 435 + + + S + TSATL+V RLG+ ++ + SPF Y + + Sbjct: 663 GELLADQFFARKNSVVLTSATLTVEGSFQFMIERLGLSDFFPRTMRIESPFSYDERMQVM 722 Query: 436 V---LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT--- 489 + ++++ T QP + A + + + + +L TSH M++ + ++ + M+ Sbjct: 723 IPKEMKSIQDTGQPEFIQDTARYIELMAKEKQPKILVLFTSHDMLKKVHQELKHNMSASG 782 Query: 490 LPVLLQGET--SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 + +L QG T S G+L++ F ++ A+L+ T+ FWEGVD GD L+ V+I +LPF SPD Sbjct: 783 IQLLAQGITGGSPGKLMKTFKTSNQAILLGTNHFWEGVDFPGDELTTVMIVRLPFRSPDH 842 Query: 548 PLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 PL A+ E R +G +PF V LP+AV+T +QG+GRL+R A D+G ++I D R+ YG Sbjct: 843 PLHAAKCELARKKGKNPFQTVSLPEAVLTFRQGIGRLLRSAGDKGTIIILDRRIKTAGYG 902 Query: 608 ATFLASLP 615 FL +LP Sbjct: 903 RLFLDALP 910 >UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atopobium RepID=C8W8J2_ATOPD Length = 978 Score = 242 bits (618), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 210/684 (30%), Positives = 317/684 (46%), Gaps = 84/684 (12%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-ALRAK 63 FA G +++ F+ R Q M+V V A+ +EAGTG GK+ AYL P AL A+ Sbjct: 281 FAKPGVVSQMYDKFETRSEQVSMSVEVRNALVTSSHRELEAGTGIGKSIAYLLPEALFAQ 340 Query: 64 KK---VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL--- 117 K V I+T + AL DQL + DLP +++AL + LKG +Y CL R+++ AL Sbjct: 341 KNDVTVGIATKTNALTDQLVTHDLPALARALPNGLSFCSLKGYEHYPCLHRVDRAALEEL 400 Query: 118 ----------AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDN 167 + + +L+ + ++ +++ Q+ DGD+ + + S +VT Sbjct: 401 PLTLIDQEGRSSNSVASDMLTAIAVIYAYACQSADGDLD-ALGIRWRSVPREMVTIKAAE 459 Query: 168 CLGSDCPMY-KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDE 226 CL S CP Y +CFV ARK+A +DVVV NH L L ++ G+++P + DE Sbjct: 460 CLRSKCPYYPHECFVHGARKRAGSSDVVVTNHSLLLRNVAAD----GKILPPIRHWVIDE 515 Query: 227 AHQLPDIASQYFGQSLSSR------QLLDLAKDITIAYR----TELKDTQQLQKCADRLA 276 AH A + +S++ +LL K I L+D+ L R A Sbjct: 516 AHGFEAEARHQWAIEISAKEMRNGFELLGGIKSGAIHAAMVGAANLEDSTLLTGLLTRSA 575 Query: 277 QSAQDFRLQLG---------------EPGYRGNLRELLANPQIQ-----RAFLLLDDTLE 316 + Q +G + GY N +L N +++ + FL Sbjct: 576 AAVQRAMAAMGNLMVAVHELAPLAKSDGGY--NSLQLWINDEVRETKEWKEFLETASVAL 633 Query: 317 LCYDVAKLSLGRS--ALLDAA-------FERATLYRTRLKRLKEI-NQPGYSYWYECTSR 366 + A L +G++ AL +A E T L+ LK I + SY Y Sbjct: 634 SALEEAALRIGKTTEALTASAPNLASNLSESGMFLSTLLESLKLICDGTDKSYVYSAKLT 693 Query: 367 HF-------TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA-- 417 L L + + E + S +FTSAT++V DD HF +G+++ Sbjct: 694 RLKRDIGSEALVAEKLDIGAELAEKWLPETHSVVFTSATIAVGDDFSHFEHAVGLDRGSF 753 Query: 418 --ESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 +SL L S FDY + V ++P PG L +L + G L T+ Sbjct: 754 EHKSLHLDSSFDYENHMGVFVAEDMPTPTDPGYLDALEKLLFDVHVQMGGSVLTLFTNRR 813 Query: 476 MMRDLAEQFRATMT---LPVLLQGETSKGQLL-QQFVSAGNALLVATSSFWEGVDVRGDT 531 M L E ++ L + Q +S + + ++F++ N L A SFWEG D GDT Sbjct: 814 DMERLYEALEPRLSEYGLTLACQERSSSARRIREKFLAEKNLSLFALKSFWEGFDAAGDT 873 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 L V+I KLPF SP++PL+K R +R + LP+AVI KQ GRLIR A+D+ Sbjct: 874 LRCVVIPKLPFASPNEPLVKER----EVREDRAWWRYSLPEAVIATKQAAGRLIRSAEDK 929 Query: 592 GVLVICDNRLVMRPYGATFLASLP 615 GVLV+ D+RLV + YG++FL SLP Sbjct: 930 GVLVLADSRLVSKRYGSSFLKSLP 953 >UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, putative n=19 Tax=Listeria RepID=B8DC27_LISMH Length = 928 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 195/657 (29%), Positives = 311/657 (47%), Gaps = 68/657 (10%) Query: 21 REPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKK----VIISTGSKALQ 76 R Q +M V QA++ G+ ++EAGTG GK+ Y PA+ K+ V+IST + LQ Sbjct: 261 RSGQFEMMNLVFQAMKSGKHALIEAGTGIGKSLGYFLPAIYQAKQAELPVVISTYTNLLQ 320 Query: 77 DQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSW 136 QL+ +D+P ++K + +LLKGR +YL L + EQ L D ++ + L W Sbjct: 321 AQLFEKDVPLLTKLTGFKVKASLLKGRDHYLNLFKFEQ-LLQEVDTQYDVVVTKLKLLVW 379 Query: 137 SNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVV 196 +T GDI + W + T P F K+A +AD+V+V Sbjct: 380 LTETTTGDIDEVNLSSGGELFWNRMKHTGWFLSEKHDPWLAHDFYKFNIKQAKNADLVIV 439 Query: 197 NHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIAS------------QYFGQSLSS 244 NH L L D SG E +P+ + DEAH D A +YF L S Sbjct: 440 NHALLLNDHF---SG-RETLPKYAFAVIDEAHHFADSARMQGSFVLSYRKIKYFLNQLGS 495 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDF----RLQLGEPGYRGNLRELLA 300 + L + +A+ E L A +L+ + ++F ++QL R NL+E++ Sbjct: 496 LEKYSLLTRLAMAF-PEADSLYDLDIAAMKLSDAVEEFFGLLKMQLNFA--RKNLQEVVL 552 Query: 301 ---------NPQI----QRAFLLLDDT---LELCYDVAK-----LSLGRSALLDAAFERA 339 N Q+ ++ LL ++ +E + K L SA L+ + Sbjct: 553 VENSEKDAWNDQVYYAAEKVLYLLKESEKNMETLLEQGKREENELGEAESAFLEEMYAFL 612 Query: 340 TLYRTRLKRLKEI---NQPGYSYWYECTSRHFTLALTPLSVADKF-----KELMAQKPGS 391 ++ +K+L+++ P + + + H ++ +V + KE A+K S Sbjct: 613 LDWQNMVKQLEQMLHKKSPILTIYLQADKNHSISSIRLKAVLMEVEPTLGKEFFAKKE-S 671 Query: 392 WIFTSATLSVNDDLHHFTSRLGIEQAESL--LLPSPFDYSRQALLCVLRNLPQTNQPGSA 449 I TSATL+V + LG+E+ + + +PSPFDY A + + ++P Sbjct: 672 VIMTSATLTVKGKFDYLRKSLGLEEEQIMEKRIPSPFDYKENARVMIPDDMPPIKDTPIE 731 Query: 450 R---QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP---VLLQGET--SKG 501 R +LA +R I NGR +L T+ M++ + +L +L QG + S Sbjct: 732 RYTSELAKYIRHIAVKTNGRMLVLFTASDMLQKTYYHMKNEKSLEEYVLLAQGVSAGSAA 791 Query: 502 QLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRG 561 +L +QF A+L+ T+SFWEG+D+ G+ LS ++I +LPF DDP KA++ + RG Sbjct: 792 RLTKQFQMFDKAILLGTTSFWEGIDIPGEDLSCLVIVRLPFAPMDDPYTKAQISLRKERG 851 Query: 562 GDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 + F LP+AV+ KQG GRLIR DRG++ + DNR+ +G FL S+P AP Sbjct: 852 ENAFQTYSLPEAVLRFKQGFGRLIRRESDRGIVFVFDNRVDTTKFGKAFLESIPSAP 908 >UniRef50_C1SGW8 DNA helicase, Rad3 n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGW8_9BACT Length = 591 Score = 238 bits (608), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 181/640 (28%), Positives = 284/640 (44%), Gaps = 58/640 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 M F+ G L+ +P ++ R+ Q A + +++ QP VVEA TG+GKT+AYL PA Sbjct: 1 MDKYFSKVGSLSDILPRYRQRDAQLDAANFIFDSMKTYQPAVVEAPTGSGKTFAYLIPAF 60 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 ++ IIST +K L Q+ +D+ V++ VA+LKGR NY C R + Sbjct: 61 ELGRRTIISTKTKQLMSQIAGKDIEAVNRIFGDDRFVAVLKGRRNYFCHLRFFRFV---- 116 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 P Q + ++ W VD +I +++ + C S C Y C Sbjct: 117 -YPNQGRFERVV--EWYGSVVDQEIIDVPIGVFSPHEIEHISTDSWQCTASKCEFYDICS 173 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVK-ESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 +A+++A AD+V+ NH+L ++D +K E+ + AD +I DEAH +PDI ++ G Sbjct: 174 FYRAKEQANSADIVITNHYLLMSDFALKSENEHASIFDFADHIIMDEAHSIPDIFPRFAG 233 Query: 240 QSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELL 299 LS R L L + A+ D ++++ A L+ + + + +RG L Sbjct: 234 TELSLRSFLKLMNENRQAF-----DPREIELAAGMLSGLLETIKTRTYTNDFRGAL---- 284 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRL--KRLKEINQPGY 357 + + A+ + FE RL K + + Sbjct: 285 ---------------------LPYIEFVNKAIGEKDFEEMKNVHKRLVEKAVSVLGDSEG 323 Query: 358 SYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA 417 + E L PL+ ADK +E M S +F SATLS + +F S G E+ Sbjct: 324 VRFVEQERGDILLQYIPLNAADKLREGMKNACLSPVFVSATLSGKGNFSYFLSETGYEEE 383 Query: 418 E--SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 E + L FD ++Q L V Q +LA + G ++C S Sbjct: 384 EIGKMSLEPVFDMAQQGRLLV-----QDCDEAFYEELALKAK-------GSVLIICNSVG 431 Query: 476 MMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 M L + + V Q + ++ + + V + F EG+D +S V Sbjct: 432 RMLKLTKMLKELCPGRVYSQRDID----IKDTEGLKDTIFVGCAVFREGMDFAHTGISYV 487 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 ++DKLPF PDD +LK + E R +G +PF + LP AVI +Q VGRL+R DD+GV V Sbjct: 488 VLDKLPFEYPDDLVLKEQAESVRKKGQEPFMDYFLPRAVIYYRQAVGRLLRHEDDKGVWV 547 Query: 596 ICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 + D R+ + YG F L PR + AV FL + + Sbjct: 548 VLDRRIDTKNYGKYFATVLKDVPRINTLDEAVAFLEVEDA 587 >UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRP7_FIBSS Length = 905 Score = 236 bits (602), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 193/672 (28%), Positives = 327/672 (48%), Gaps = 76/672 (11%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 +++ F G ++ + +KPR Q+ A + + + KG V+EA TG+GKT +YL A Sbjct: 226 VSEFFKEGGFISFVVDDYKPRHNQQDFASVMERNMYKGGLCVLEAPTGSGKTLSYLITAA 285 Query: 61 R---AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNV--ALLKGRSNYLCLERLEQQ 115 ++V+IST ++ LQ+QL++ +P ++K Y G + A+LKGR NYLCL + E+ Sbjct: 286 NKAITGERVLISTATRTLQEQLWTEAIPQIAKI--YNGELRPAILKGRDNYLCLRKFEEL 343 Query: 116 ALAGGDLPVQILS-----DVILLRSWSNQTVDGDISTCVSVAEDSQA--WPLVTSTNDNC 168 + P +LS + L W T GDI+ C S ++ W ++ + C Sbjct: 344 LMH----PQTLLSAEERDSFMALIPWVLSTETGDINECNSFSQSRNRVLWSKLSCSASCC 399 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAH 228 G + +++C + A++KAM+A++V+VNH LFL+D+ + + L+P + ++FDEAH Sbjct: 400 NGENHSHHENCPALIAKRKAMNANMVLVNHSLFLSDLQLDFA----LLPSYEHIVFDEAH 455 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDI------------TIAYRTELKDTQQLQKCADRLA 276 +LP+I++Q FG+S+S ++AK + IA R + +L + D+L+ Sbjct: 456 RLPEISNQVFGRSISFFGFRNIAKTLEPSKAGGDGLIAEIASRIP-AEKPELHEICDKLS 514 Query: 277 QSAQD-------FRLQLGEP------GYRGN------LRELLANP-----QIQRAFLLLD 312 ++ + F +++G+ G G L E A+P Q A + Sbjct: 515 EALGEAEKALHRFFMKIGKKLAKQKNGRSGFTYTNSILAEYEADPATFLEQYNNARGFAE 574 Query: 313 DTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLAL 372 + ++ L G + LD+ + + + + + + + + ++ E T+ L Sbjct: 575 KLVAATANMDGLK-GIVSDLDSRMTEISHFISDFEFVTKAGRNDWVFYMEEPFNPHTIKL 633 Query: 373 T--PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPF---- 426 PL + ++E S FTSATLSV DL +F ++G++ L PF Sbjct: 634 HALPLHSGNVWREKFYPWIKSATFTSATLSVQADLTYFLQKMGMDNLR--LGKQPFVRVY 691 Query: 427 ----DYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHA-MMRDLA 481 D + + + V + LP+ + P L L ++ +L TS A MM+ A Sbjct: 692 TEQSDVNERRSVMVAKFLPKPSAPEFGDALNDTLLKVLPNVEENTMVLFTSVATMMKAQA 751 Query: 482 EQFRATMTLPVLLQGETSKGQ---LLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIID 538 A LL + G L+ F A L+ S WEGVD GD L L++I Sbjct: 752 ALAPAFAERNKLLLCQHVDGSLDGLVAMFRKERGACLLGCQSLWEGVDFPGDALKLLVIT 811 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 KLPF +P DPL+ + + + F + +P+A I L+QG+GRL+R D G ++I D Sbjct: 812 KLPFPNPSDPLVAGLTNEMKAANKNFFKDYFIPEAYIELRQGMGRLLRSDSDSGKVLILD 871 Query: 599 NRLVMRPYGATF 610 NR+V+ YG TF Sbjct: 872 NRVVLERYGKTF 883 >UniRef50_C1TS05 DNA helicase, Rad3 n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TS05_9BACT Length = 652 Score = 235 bits (600), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 212/673 (31%), Positives = 328/673 (48%), Gaps = 73/673 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIE--KGQPLVVEAGTGTGKTYAYLAP 58 MTD F PDG + GF+ R Q +++ AV +E G+ L EA G GKT+A LAP Sbjct: 1 MTDLFGPDGLFCNNLSGFEYRPQQERLSQAVLGLLEGNSGRILAAEAPPGVGKTFALLAP 60 Query: 59 ALRAKKK----VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQ 114 A+ K V++ T S LQ+QL ++DLPT+S+ L LLKGRSNY C+ + + Sbjct: 61 AVTWAKTTGNTVLVLTSSITLQEQLINKDLPTLSEVLGLDVPFGLLKGRSNYACMRKASE 120 Query: 115 QALAGGDLPVQILSD------VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC 168 GD + +D VIL W T +GD+S V + A ++ + C Sbjct: 121 L----GDEGLLSFNDKGEASGVIL--EWLALTEEGDLSE-VPLPPGHPAVERISGSFRGC 173 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAH 228 LG+ CP CFV +A + A VVV N+HL+ + + + F +P A +++ DEAH Sbjct: 174 LGARCPYRDRCFVQRALRNASRWTVVVANYHLYFSYALGRGGAFP--VP-ARLVLCDEAH 230 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDI---------TIAYRTELKDTQQLQKCADRLAQSA 279 ++P+ AS S S ++ D + + + +T D Q+ L ++ Sbjct: 231 RMPEAASSV---SAVSTRMDDWIRHLRRVPSPGLNELGAKTVGYDQQKTLDDVKSLNRAV 287 Query: 280 QDFRLQLGEPGYRGNLRELLANPQ-IQRAFLLLDDTLELCYDVAKLSLGRSALLD----A 334 + F +L G + L + P+ + R L D L+L V S+ LD + Sbjct: 288 RLFFERLDSSGIKNGL--FIEPPEELVREGL---DVLDLAAPVIATGRRFSSYLDDLGPS 342 Query: 335 AFERA---TLYRTRLKRLKEINQ-----------PGYSYWYECTSRHFTLALTPLSVADK 380 E A Y ++ L E+ Q P ++YW E L+ P D Sbjct: 343 GEEMARDGAEYLAWVQVLDEMGQAFRWCLDVSDYPDWTYWKE----DGALSSAPSKCGDI 398 Query: 381 F-KELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQ-ALLCVLR 438 + P + SAT++V+ +++ G+E E+LLL SPF S Q LL V Sbjct: 399 LPRAFGGDDPPYMVAVSATMAVDGRFDYWSRETGLEPDEALLLDSPFPLSEQMELLVVDL 458 Query: 439 NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR--ATMTLPVLLQG 496 + T++ R + ++R + + N G +L +S +++ + R + VL+QG Sbjct: 459 GIAVTDEKYDDR-VCRVVRKLCKENGGASLVLLSSTRLLKRVGGYLRRCSGDGYNVLIQG 517 Query: 497 ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMED 556 + K +LL++F +++LV T SF EGVDV GD+L+ VIID++PF PDDP+ +AR + Sbjct: 518 DLPKVELLRRFREDESSVLVGTVSFREGVDVPGDSLTQVIIDRIPFPHPDDPIQRARRD- 576 Query: 557 CRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPP 616 L G F + LP+A + L+Q VGRLIR DRG + + D RL+ R L SLP Sbjct: 577 --LEGPSSFVKSVLPNAKMHLRQAVGRLIRSYGDRGRVAVLDGRLLSR-RNWRVLDSLPD 633 Query: 617 AP--RTRDIARAV 627 P + R + R+V Sbjct: 634 VPIRKIRVVDRSV 646 >UniRef50_A6VX61 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=A6VX61_MARMS Length = 707 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 200/689 (29%), Positives = 308/689 (44%), Gaps = 100/689 (14%) Query: 19 KPREPQRQMAVAVTQAI------------EKGQPLVVEAGTGTGKTYAYLAPALRAKK-- 64 KPR QRQM A+ + + E+ V+EAGTGTGKT +Y A+ K Sbjct: 24 KPRAGQRQMIGAIARTLGNIKQGSEGERLEEKHVAVIEAGTGTGKTLSYCLAAIPIAKAR 83 Query: 65 --KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE------QQA 116 K+IIST + ALQ+Q+ ++LP + + + T L KGR YLCL LE +QA Sbjct: 84 GLKLIISTATVALQEQILHKELPDLLEHTELTFKYTLAKGRGRYLCLNNLEGFLSSEEQA 143 Query: 117 LA---GGDLPVQILSDVILLRSWSNQTV-------DGDISTCVSVAEDSQAWPLVTSTND 166 + G + SD I + DGD + D Q W +T+ + Sbjct: 144 MDDMFAGLFEQHLHSDDINTVLYQEMDTALQKGDWDGDKDNWAGIVRD-QDWRRLTTDHQ 202 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADVMIF 224 C +C Y C KAR + ADV+V NH L LAD+ + G G ++ P+ + IF Sbjct: 203 QCTNRNCANYSACPFFKARAEIEVADVIVANHDLVLADLSL---GGGAILTPPKETIYIF 259 Query: 225 DEAHQLPDIASQYFGQSLSSRQLL---------------DLAKDITIAYRTELKDTQQLQ 269 DE H LPD A +F + +Q + +L D+++ + LK QQ+Q Sbjct: 260 DEGHHLPDKAIGHFRHEVRLQQSITWLRQLEKNLVNLKQELTDDVSVTGQLLLKIPQQIQ 319 Query: 270 KCAD----------------RLAQSAQDFRLQLGEPGYRGNLRELLANPQI--QRAFLLL 311 + L Q R + G+ LR+L + Q Q+ F + Sbjct: 320 SIVNFIQYAQQGLAPYIQGLGLDQENNQHRFEFGQ--IPDELRQLAYSLQTSYQKLFNNI 377 Query: 312 DDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEI-------------NQPGYS 358 + + C K + G + A + L RL++ N P + Sbjct: 378 ESIQDECKKT-KQNEGMGVTPETAETWQPILGVILGRLEQCIGLWCLYSTVDDQNFPPNA 436 Query: 359 YWY----ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 W + + L +P+ A+ ++ + K + TSATL+ + H F R G+ Sbjct: 437 RWLVLSGQGMEQDIELGGSPILAANTLRQQLWDKCFGAVVTSATLTALNQFHRFNMRSGV 496 Query: 415 -EQAESLLLPSPFDYSRQALLCV--LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLC 471 ++E L + SPF++ LL V + + P + +A ++ L + G +L Sbjct: 497 PRESEYLRVISPFNFQENGLLVVPDMEHEPNRVEQHTA-EIVTYLDKHVNTEKG-SLVLF 554 Query: 472 TSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVS----AGNALLVATSSFWEGVDV 527 +S M ++A+ + +L+QGE SK +L S +LL+ +SF EGVD+ Sbjct: 555 SSRRQMEEVAQSVSVGLQEILLMQGEQSKRVILDSHKSRIDEGKGSLLLGLASFAEGVDL 614 Query: 528 RGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRD 587 GD L+ V I K+PF PDDP+ E + RGG+PF E+ +PDA + L Q GRL+R Sbjct: 615 PGDYLTCVYIAKIPFAVPDDPVEATLAEWIQKRGGNPFMEITIPDASLRLVQATGRLLRS 674 Query: 588 ADDRGVLVICDNRLVMRPYGATFLASLPP 616 D G + I D RL + YG+ + SLPP Sbjct: 675 EKDSGEIHILDKRLRTKRYGSQLINSLPP 703 >UniRef50_C9M767 Putative ATP-dependent helicase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M767_9BACT Length = 639 Score = 231 bits (589), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 197/651 (30%), Positives = 328/651 (50%), Gaps = 43/651 (6%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQ-AIEKGQPLVVEAGTGTGKTYAYLAPA 59 M D F DG L+ +P F+ RE Q ++A A++Q + + EA TGTGKTYA + PA Sbjct: 1 MEDIFGSDGLLSMGMPEFEVREGQGELADAISQFLLSDERVFAAEAPTGTGKTYAVMVPA 60 Query: 60 L----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLER---L 112 + R +++++ T S LQ+QL +D+P + AL LLKGR +Y CL + L Sbjct: 61 MLWAQRYGRRLLVLTSSVTLQEQLADKDIPALQAALGLELRCCLLKGRGHYACLRKALSL 120 Query: 113 EQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD 172 + D LS I+ +WS +T GD++ +S++ + + S++ CLG Sbjct: 121 GDEGFLSFDGDDGQLSQRIV--AWSGETETGDLAE-LSLSANHPVLARIVSSHQTCLGKL 177 Query: 173 CPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPD 232 CP CF +A ++A ++DVVV N+H + A + E E D+++ DEAH + Sbjct: 178 CPCRDRCFYRRAMRRASESDVVVSNYHKYFAYRLDGE----EFPIPCDLIVCDEAHAMSA 233 Query: 233 IASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQ--QLQKCADRL----AQSAQDF-RLQ 285 A S + + + + A ++ L+ ++ + AD L AQ+ + F LQ Sbjct: 234 SARSVAAVSSRRGEWDHVLRHVPPAVKSLLETSEGDSEKALADVLTSLRAQAEELFLYLQ 293 Query: 286 LGEPGYRGNL----RELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATL 341 L +P N R L + ++ L + + L + A+ G + A + + Sbjct: 294 LPQPENSPNNPYSDRVLASGGELTGGASRLAERV-LSHPPAEDDEGNLPAVQWALGLSDM 352 Query: 342 YRTRLKRLKEINQ-PGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIF-TSATL 399 R RL + + ++ P ++YW++ H +L +P++ A E++ I SAT+ Sbjct: 353 AR-RLNQCCDTSRWPEWAYWHD----HESLKCSPVTGAPMISEVLDTPDAPKIVAVSATM 407 Query: 400 SVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPI 459 +V+ + + + G+ E+ ++PSPF+ S Q + V+ + ++A + R Sbjct: 408 TVDGKFNFWAAETGLWPDETRIMPSPFNLSEQMSVHVVDLGVRVMDREYGERVAKVCRRY 467 Query: 460 IEANNGRCFMLCTSHAMMRDLAEQFRATMTLP---VLLQGETSKGQLLQQF-VSAGNA-L 514 N G +L +S ++ +A + + VL QG+ +LL QF + G A + Sbjct: 468 CVRNKGATLVLLSSRRLLESVAGYLKGHASADGYCVLAQGDKPSAELLAQFRKNDGEAKV 527 Query: 515 LVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAV 574 LV +SF EGVDV GD L+ VIID++PF+ PDDP+++AR L GG F V+LP A Sbjct: 528 LVGLASFREGVDVAGDALTQVIIDRIPFSHPDDPIVQARRA---LEGGKYFTAVELPGAK 584 Query: 575 ITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIAR 625 + L+Q +GRLIR D G +VI D+R+ + F+ SLPPAP R + + Sbjct: 585 MRLRQAMGRLIRSKTDHGRVVILDSRITQKQQW-KFIDSLPPAPLKRVVVK 634 >UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=2 Tax=Bacillaceae RepID=A3I8T8_9BACI Length = 914 Score = 231 bits (589), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 195/671 (29%), Positives = 316/671 (47%), Gaps = 81/671 (12%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKV 66 + KA+P F+ R Q +M + QA+ + + V+EA TG GKT YL PA+ KK+ Sbjct: 240 MTKALPNFEERPAQFKMMDTIWQALHEQKECVIEASTGIGKTAGYLLPAIVYARTVHKKI 299 Query: 67 IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQI 126 IST + LQ+QL +LP + K L N+ +LKG +Y+ L+R EQ ++A D Sbjct: 300 AISTYTSYLQEQLVEEELPKIEKILGTKVNICVLKGMQHYIDLDRFEQ-SMAYADESYDD 358 Query: 127 LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARK 186 ++ + W +T G +S ++V+ Q + + +D P F +A K Sbjct: 359 TFSILQILVWLTKTETGVLSE-LNVSGGGQ----LFLEKIRKIPNDKPSKGFDFYEQALK 413 Query: 187 KAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ---------- 236 + AD +V NH + L+D+V + F ++ D + DEAHQ A Q Sbjct: 414 NSAFADCIVTNHAMVLSDLVRQTPIFTQI----DGWVIDEAHQFIQAAMQQDEIVFSYTQ 469 Query: 237 ---YFGQ--SLSSRQLLDL-AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPG 290 FGQ ++ L L + R ++ Q+L RL Q A D +Q Sbjct: 470 WKYIFGQIGTMEDTGLYQLFCEAAKKKQRVSMQSLQRLDAHFIRL-QRAFDETIQRAAQS 528 Query: 291 YRGNLRELLANPQIQRAFLLLDDTL--ELCYDVAKLSLGRSALLDAAFERATLYRTRLKR 348 + ++ A+ + + D TL E V+KL+ LD A E A + +++ Sbjct: 529 MQQQMKGKRASSKC--TLFIEDVTLAKESFLQVSKLT---QQWLDLATEAAQGFENNIEQ 583 Query: 349 L---------------KEI-------------NQPGYSYWYECTSRHFTLAL----TPLS 376 L +E+ + G S W E R +L P + Sbjct: 584 LDKNDRYILSEWHYWIREVKIKIAEWEDIFLSSHDGSSVWLEFDVRSVPGSLHVFKKPAN 643 Query: 377 VADKFKELMA--QKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYSRQAL 433 V ++++A +K S ++TS TL V + T +LGI + E + L +P Y A Sbjct: 644 VTPIIEQVLAPLRKQASIVWTSGTLMVPGNERFVTRQLGISDSVEVIKLQAPPAYYAGAK 703 Query: 434 LCVLRNLPQTNQPGSARQLAAMLRPI---IEANNGRCFMLCTSHAMMRDLAEQFRATMTL 490 ++ ++P + A+ I + GRCF+L T+ M+R E + + L Sbjct: 704 AFIVTDMPDIQHVSQEEYIEAVAHAITRTVRMTEGRCFVLFTAQDMLRKTVELIQDSELL 763 Query: 491 P---VLLQGET--SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSP 545 + QG T S+ ++L+ F +A+L T+SFWEGVDV GD L+ VI+ +LPF+SP Sbjct: 764 DDYMLFAQGVTGGSRMRILKSFQKFSHAVLFGTNSFWEGVDVPGDALASVIVVRLPFSSP 823 Query: 546 DDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRP 605 ++P+ KAR + +G + F E+ LP+A++ KQG GRLIR + D+G ++ D R+ + Sbjct: 824 EEPVFKARAKHLTAQGRNSFTELSLPEAIMRFKQGFGRLIRSSQDKGAFIVLDRRITSKS 883 Query: 606 YGATFLASLPP 616 YG F+ +LPP Sbjct: 884 YGKEFIKALPP 894 >UniRef50_D1SEM0 Helicase c2 n=2 Tax=Micromonospora RepID=D1SEM0_9ACTO Length = 713 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 222/690 (32%), Positives = 306/690 (44%), Gaps = 116/690 (16%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 A+PG R Q+QMA A+ ++I G+ L+V+AGTGTGK+ AYLAPAL V++ST + Sbjct: 33 AVPGGAARPGQQQMAEAIERSIASGEHLLVQAGTGTGKSLAYLAPALTVDGPVVVSTATL 92 Query: 74 ALQDQLYSRDLPTVSKA----LKYTGNVALLKGRSNYLCLERLEQQ-----------ALA 118 ALQ QL DLP ++ A L A+LKGR +YLCL RL+ A Sbjct: 93 ALQSQLVEHDLPRLADAVEPVLGRRPTFAVLKGRHHYLCLARLDSSVEDEPDDALFDAPH 152 Query: 119 GGDLPVQILSD-------VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG- 170 G+ + L + V LR W+ +T GD + D Q W V+ C+G Sbjct: 153 SGNGGTKWLGEAGRLGKQVQRLRDWAEETATGDRDE-LDPGVDDQVWRSVSMPARECVGA 211 Query: 171 SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQL 230 S CP ++CF +R +A +AD+VV NH L DM+ ++P +++ DEAH+L Sbjct: 212 SRCPFGQECFAEASRARAREADIVVTNHSLLAVDMLAGR----HIVPPHRLLVVDEAHEL 267 Query: 231 PDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPG 290 D S L +L+D + T R L+ A+RL ++ + L E Sbjct: 268 ADRVSSAAQAELVP-ELIDRS---TRRARPLLR-----PDVAERLTEAGDALAVGLAE-A 317 Query: 291 YRGNLRELLANPQIQRAFLLLDD----TLELCYDVAK------LSLGRSALLDAAFERAT 340 G L L P ++ A LLD LE DV A+LD Sbjct: 318 PAGRLTAGL-PPALREACTLLDSATRAALEGIGDVKADDPDPVRKQQAKAVLD------E 370 Query: 341 LYRTRLKRLKEINQPGYSYWYEC--TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSAT 398 L T + L+E + W E L + PLSVA + + + + TSAT Sbjct: 371 LSTTAQRLLEEADH--DVAWVEKPDNGSRRALVVAPLSVAGTLATHLYDE-RTVVATSAT 427 Query: 399 LSVNDDLHHFTSRLGIE-------------------QAESLLLP-SPFDYSRQALLCVLR 438 L++ LG++ S + P + + SR ++ V Sbjct: 428 LALGGRFDTVARALGLDAPPPAPPSPAAAAIATAAAAGRSPVTPVAAAEGSRASVGTV-- 485 Query: 439 NLPQTNQPG-----------SARQ----LAAML-RPIIEANNG---------------RC 467 P T PG ARQ +AA L RP + G R Sbjct: 486 --PATEGPGWSSLDVGSPFDYARQGILYVAAHLPRPSVSGLPGPAGEELLALVEALGGRT 543 Query: 468 FMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDV 527 L +S + AE RA LPVLLQGE + L+++F + L S W+GVDV Sbjct: 544 LGLFSSRRAAQQAAELVRARTDLPVLLQGEEALPLLVRRFREVRESCLFGVMSLWQGVDV 603 Query: 528 RGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRD 587 GD LV+ID+LPF PD+PL AR GG F V +P A + L QGVGRLIR Sbjct: 604 PGDACQLVVIDRLPFPRPDEPLAAARAAAVDAGGGSGFAAVSVPIAAVRLAQGVGRLIRA 663 Query: 588 ADDRGVLVICDNRL-VMRPYGATFLASLPP 616 DRGV+ + D+RL R YG SLPP Sbjct: 664 TGDRGVVAVLDSRLETARGYGPFLRRSLPP 693 >UniRef50_C8RVT0 ATP-dependent helicase DinG (Fragment) n=2 Tax=Corynebacterium jeikeium RepID=C8RVT0_CORJE Length = 609 Score = 224 bits (570), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 203/607 (33%), Positives = 286/607 (47%), Gaps = 72/607 (11%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKK----VIISTGS 72 G PR Q++MA AV +AI+K L V+AGTGTGK+ AYL P++ A VI+ST + Sbjct: 17 GGAPRPGQQKMAKAVAEAIDKEHHLAVQAGTGTGKSLAYLIPSIAAAMDSDYPVIVSTAT 76 Query: 73 KALQDQLYSRDLPTVSKALK----YTGNVALLKGRSNYLCLERLEQ-QALAGGDLPVQIL 127 ALQ QL RDLP ++KAL+ A+ KGR NY+CL +++ Q +G + + L Sbjct: 77 IALQRQLVERDLPRLAKALEPELPRPLEFAIQKGRGNYVCLNKVQNAQTESGVEEAEESL 136 Query: 128 SD----------VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD-CPMY 176 D V L W+ +T DGD D +AW V+ ++ CLG+ CP Sbjct: 137 LDPSQLSATGAQVARLHEWAGETEDGDRDNLPQGVSD-RAWRQVSVSSRECLGATRCPFG 195 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 + CF +AR A DADVVV NH L D +V ++PE D +I DEAH+L D + Sbjct: 196 EQCFAERARAHAADADVVVTNHALLAIDALVD----APVLPEHDTVIVDEAHELEDRITS 251 Query: 237 YFGQSLSSRQLLDLAKDIT-IAYRTELKDTQQLQKCADRL--------AQSAQDFRLQLG 287 LS + LAK +A +L + DR A S + R G Sbjct: 252 VATAELSPTAIAVLAKRAAKLAVSGADAAGDELAEAGDRWTEALKAEAAASRNNDRFGTG 311 Query: 288 EPGYRGNLRELLANP---------QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFER 338 G + E L P + R + + E D K++ R A++ A E Sbjct: 312 IEGRWTGVPEALQVPLAALRDAAWKTNRQVSGIPAS-EFANDSKKVA-ERLAVI-VATEE 368 Query: 339 ATLYRTRLKRLKEINQPGYS-----------YWYECTS-----RHFTLALTPLSVADKFK 382 R+ + + G S WY S +H + + PLSVAD + Sbjct: 369 LNDTCVRILNASRVGE-GTSADDEDLLGEDVIWYTADSGPRAPKHV-VRVAPLSVADLLR 426 Query: 383 ELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL-LPSPFDYSRQALLCVLRNLP 441 + + + + I TSATL++ S G+ ++ L +PFD +L V R+LP Sbjct: 427 QRLFGR-NTVILTSATLALGGKFTSMLSCWGLPKSTPTLDAGTPFDARTHGILYVARHLP 485 Query: 442 QTNQPGSARQLAAMLRP---IIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGET 498 PG R A + +I A GR L +S D+AEQ R + +LLQGE Sbjct: 486 ---PPGRDRASDASVDETARLINAAGGRTLGLFSSRRAAEDMAEQLRTVVPYEILLQGED 542 Query: 499 SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCR 558 S L+++F +A L T W+GVDV G +LSLVIID++PF PDDPL +AR E Sbjct: 543 SMSTLVEKFRKNQSACLFGTLGLWQGVDVPGKSLSLVIIDRIPFPRPDDPLQQARQEAAD 602 Query: 559 LRGGDPF 565 RGG F Sbjct: 603 QRGGSGF 609 >UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus coagulans 36D1 RepID=C1PF24_BACCO Length = 930 Score = 221 bits (562), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 184/678 (27%), Positives = 301/678 (44%), Gaps = 70/678 (10%) Query: 3 DDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA--- 59 D + A + G + R Q +M V +A + + +EAGTG GK+ AYL PA Sbjct: 240 DAVEKESWFAASGTGMEARPAQFEMMDHVREAFSVEEHVALEAGTGIGKSLAYLVPAAFQ 299 Query: 60 -LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALA 118 + +K V+IST + AL+ QL ++++ + + LK LLKGRS+YL L + EQ +L Sbjct: 300 AISEQKPVLISTYTVALEHQLLNKEIKRLEQMLKTPVRTVLLKGRSHYLHLFKFEQ-SLK 358 Query: 119 GGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 D + + + W +T GD+ W + + D P Sbjct: 359 EPDRQYDAVFAKMQILVWLTETESGDLDELHLSGGGKHFWQRIKQDGWHTDKKD-PWKSR 417 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYF 238 F + A+ A AD+ V NH + A++ +S F +I DEAH+L A + Sbjct: 418 DFYLYAKACAASADIAVTNHAMLCAELERDQSVFDGF----QYVIIDEAHRLEQAARETI 473 Query: 239 GQSLSSRQL------LDLAKDITIAYRTE-------LKDTQQLQKC-------------- 271 G+ S Q+ L L + + Y+ E LK + +C Sbjct: 474 GKRASYNQMKYMMARLGLYEQKQLFYKLEKVMEKYGLKASLHAFECDAILQALDAELDDL 533 Query: 272 ----------ADRLAQSAQDFRLQLGEPGYRGNLRE--LLANPQIQRAFLLLDDTLE--L 317 A+R Q +L++ + ++ + LL +I+ + + LE L Sbjct: 534 FGMLAQKVLRANRETNGYQKIKLRIKKENWKQKAWQAVLLCTERIRASMKEISQALEERL 593 Query: 318 CYDVAKLSLGRSAL-----LDAAFERATLYRTRLKRLKEINQPGYSY-WYECTSRHFTLA 371 +++ + AL + + E L R L N + W E R + Sbjct: 594 SQLLSEKQMKEQALAFIEEMYSFLEDWRLLRDNLAIFAGQNGGDENVVWVEGDLRALPNS 653 Query: 372 LT----PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA-ESLLLPSPF 426 L P+ + ++ + S + TSATL+V +F G+ +++ +PSPF Sbjct: 654 LVIYCQPVHAGEILQKAFFSRKKSVVLTSATLTVGGSFRYFLDETGLAHTTKTVRIPSPF 713 Query: 427 DYSRQALLCVLRNLPQTNQPG---SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQ 483 + RQ + +LP A ++A L + EA GR +L TS +++++ Sbjct: 714 RFDRQVQFIIPNDLPDIGSVSIEDFAEKMAGYLLAVAEATKGRMMILFTSFDLLKNVYHL 773 Query: 484 FRATMTLP---VLLQG--ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIID 538 + + L + QG S+ +L + F G A+L SSFWEGVD+ GD LS +++ Sbjct: 774 MKESGMLEDYMFIAQGISSGSRSRLTKSFQKFGKAILFGLSSFWEGVDIPGDDLSCLVMA 833 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 +LPF PD+P+ +A+ + R +G +PF LP+AV+ KQG GRLIR DRG+ ++ D Sbjct: 834 RLPFLPPDEPVTEAKSDYFRAKGKNPFSAYALPEAVLRFKQGFGRLIRTRHDRGIFLVLD 893 Query: 599 NRLVMRPYGATFLASLPP 616 R+ YG F SLPP Sbjct: 894 RRIETATYGPAFTKSLPP 911 >UniRef50_P29741 Probable ATP-dependent helicase dinG homolog n=50 Tax=Gammaproteobacteria RepID=DING_PHOPR Length = 692 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 192/683 (28%), Positives = 315/683 (46%), Gaps = 82/683 (12%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAI-----EKGQPLVVEAGTGTGKTYAYLAP----AL 60 L + F PR Q + + + + +K + LV EAGTG GK+ AYL AL Sbjct: 16 NLGNQLDNFIPRRAQNYLVAEIAKTLAGEYHQKHRMLVGEAGTGIGKSLAYLLGGIPFAL 75 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 KK++IST + ALQ+QL ++DLP ++ + L KGR Y C +LE Sbjct: 76 FNNKKLLISTATVALQEQLINKDLPLFNRIYPKEFSFILAKGRQRYCCNHKLEACCATNN 135 Query: 121 DLPVQIL------SDVILLRSWSNQT----VDGDISTCVSVAEDSQAWPLVTSTNDNCLG 170 D V + SD+ LLR T DGD + + D + WP + + +C Sbjct: 136 DQQVTLWEEKPKKSDLDLLRRMLKATRDGKWDGDRDSWPTTIPD-RVWPQIMADKHSC-H 193 Query: 171 SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD--VMIFDEAH 228 + P ++ C KAR+ ADV++ NH L +AD+ E G G ++PE + + + DEAH Sbjct: 194 AGLPQHRSCPFAKAREHLDKADVIIANHALLMADI---ELGGGVILPEPEQTIYVIDEAH 250 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDI--TIAYRTELKDTQQLQKCADRLAQSAQD----- 281 LP +A + + S + + + TI EL + ++ + D + ++ Q Sbjct: 251 HLPKVARDFSSAASSLKGAATWLEKLNQTIGKLAELAEYKKAARFQDAILENIQHLIPTL 310 Query: 282 -----------------FRLQLGE-PGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAK 323 +R + GE P + + + ++A L +L + K Sbjct: 311 RQVANNVDVGMFSKDGIYRFEHGELPAWLEQEAKGCKDAS-KKALQSLGKIHDLISERLK 369 Query: 324 LSLGRSALLDAAFERATLYRTRLKRLKEI----NQPG------YSYWYECTSRH---FTL 370 + + L + A + +Y RL+ L+++ QP + W E + + + Sbjct: 370 DNEIQQRLGEQALAESGVYLQRLENLEKVWALMAQPKKDKGAPLARWIEKNPDNEGDYII 429 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES---LLLPSPFD 427 ++PL V + +L+ + I SATL + +F ++GI + +S L L SPFD Sbjct: 430 QVSPLEVGYRLDQLLWSRAAGAILVSATLRALNQFTYFCRQVGIYEMDSTRFLALASPFD 489 Query: 428 YSRQALLCVLRNLPQTN-QPGSARQLAAMLRPIIEANNGRC--FMLCTSHAMMRDLAEQF 484 Y A L + P + +P + + +++ + E G +L +S+ M +A++ Sbjct: 490 YQNNARLVI----PALSLEPQADKFTDLLIKTLPEYLEGETASLVLFSSYWQMNKVADEL 545 Query: 485 R---ATMTLPVLLQGETSKGQLLQQFV----SAGNALLVATSSFWEGVDVRGDTLSLVII 537 R +L+QGE S+ L++ S ++L T SF EG+D+ GD L +II Sbjct: 546 RPLAKKNKWELLVQGEESRHITLKKHKDNCKSGKPSILFGTGSFSEGLDLPGDLLKNLII 605 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 K+PF P P+ +A E GG+PF ++ +P+A L Q VGRLIR DD G +V+ Sbjct: 606 TKIPFGVPTSPVEEAHAEYIESCGGNPFMQISVPEASKKLIQSVGRLIRKEDDMGRVVLL 665 Query: 598 DNRLVMRPYGATFLASLPPAPRT 620 D R++ R YG L SLPP R Sbjct: 666 DRRIINRRYGKALLDSLPPFKRV 688 >UniRef50_A4A9L6 ATP-dependent helicase, DinG n=4 Tax=unclassified Gammaproteobacteria RepID=A4A9L6_9GAMM Length = 707 Score = 220 bits (561), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 206/687 (29%), Positives = 316/687 (45%), Gaps = 90/687 (13%) Query: 17 GFKPREPQRQMAVAVTQAIEK-----------GQPL-VVEAGTGTGKTYAYLAPAL---R 61 G PR QRQM V + + G P+ V+EAGTGTGKT AY+ PAL R Sbjct: 24 GLTPRWGQRQMIAEVANTLARLSPSMGAADTEGSPIAVIEAGTGTGKTIAYVIPALVMAR 83 Query: 62 A-KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL--A 118 A K+++I+T + ALQ+QL +DLP + K + L KGR YLCL +L++ + Sbjct: 84 ALNKRLVIATATVALQEQLVHKDLPDIKKGSGLDFSFQLAKGRRRYLCLSQLDRLMARES 143 Query: 119 GGDLPVQILSDVI--------------LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTST 164 GG + + D + +L + + DGD + D+ +P VT+ Sbjct: 144 GGGQTMGLYPDEVSPALARDALESYGLMLDALARGDWDGDRDNWSAPINDADWFP-VTAD 202 Query: 165 NDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADVM 222 C G CP ++C +AR +ADVVV NH L L+D+ + G G ++ PE + Sbjct: 203 QGQCTGRRCPNIRNCSFYRARDGLQEADVVVTNHDLVLSDLAL---GGGAILTPPEDTIY 259 Query: 223 IFDEAHQLPDIASQYFG------QSLS----SRQLLD-----LAKDITIAYRTE-----L 262 IFDE H LPD A +F +LS SR+ L LA ++ E Sbjct: 260 IFDEGHHLPDKALNHFASFCRLPSTLSWLGDSRKALAKGAPLLATLPGLSTVLEPLPALF 319 Query: 263 KDTQ-QLQKCADRLA---QSAQDFRLQLGEPG--YRGNLRELLANPQIQRAFLL------ 310 D Q +LQ+ A++ A SA DF QL G +L++ A+ Q A L Sbjct: 320 DDLQLRLQQIAEKAAAIMASAGDFEEQLRFEGGVVPPDLQQATASLASQWARLTGRLITL 379 Query: 311 ---LDDTLE------LCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 +DD LE + ++ + +L A +L++ E P + W Sbjct: 380 EAGIDDALEDESFASVRDELEAWQMAVGGMLVRAEGVLSLFQDFAADAAE-ESPPRARWL 438 Query: 362 ECTSRHFTLAL----TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQ 416 + + LA+ + + AD +E + + I TSAT++ F +R G+ E Sbjct: 439 KRRADDEELAIDLHCSHILAADILREQLWDRAAGVILTSATMTALGSFDRFRARSGVPED 498 Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 ++ SPFDY + L + P R+L +L +++A G +L +S Sbjct: 499 GRYKIVASPFDYGKATLHVPAMKSEPGDAPAHTRELIELLPDLLDAGEG-SLVLFSSRRQ 557 Query: 477 MRDLAEQFRATMTLPVLLQGETSKGQLLQQF---VSAG-NALLVATSSFWEGVDVRGDTL 532 M D+ + +L Q + SK ++L++ + G A++ +SF EGVD+ G Sbjct: 558 MNDVYDGLPVEWRSRILRQDDYSKQEILRRHRETIDDGRGAVIFGLASFAEGVDLPGGYC 617 Query: 533 SLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRG 592 V+I KLPF PD+P+ A E +G + F E+ +PDA + L Q GRL+R D G Sbjct: 618 QHVVIAKLPFAVPDNPVDAALAEWLEAQGRNAFMEISVPDAALKLVQASGRLLRTETDVG 677 Query: 593 VLVICDNRLVMRPYGATFLASLPPAPR 619 + + D R++ R YG L SLPP R Sbjct: 678 RVTLMDRRVITRRYGRAILDSLPPFQR 704 >UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=1 Tax=Carnobacterium sp. AT7 RepID=A8UAR2_9LACT Length = 939 Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 173/645 (26%), Positives = 290/645 (44%), Gaps = 67/645 (10%) Query: 41 LVVEAGTGTGKTYAYLAP---ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNV 97 +EA TG GKT YL P + V+IST + LQ QL +D+ ++ L +T Sbjct: 281 FAIEAATGVGKTLGYLLPLAYIASVENPVVISTYTTLLQKQLLDKDIVQLNTILPFTVQA 340 Query: 98 ALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQA 157 A+LK +++Y+ L + E+ D V+++ + LL +W +T GD+ + Sbjct: 341 AILKSKNHYIHLTKFEEVLKEPVDQKVEVIYQMKLL-TWLTETETGDLDELNLTNYNHLF 399 Query: 158 WPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIP 217 W V + Y + F V A+ K A V++ NH D+ KE +P Sbjct: 400 WNKVRHRGWLTRPEEDRWYDEDFYVHAQHKIKHASVIITNHSFLCHDLNRKEKE----LP 455 Query: 218 EADVMIFDEAHQLPDIA----SQYFG-----------------QSLSSR--QLLDLAKDI 254 +I DEA LPD+A S+ FG +S R QL I Sbjct: 456 SIGKLIVDEAQHLPDVAMEASSEIFGYYRMQQIIKLIGRASEEKSFLGRITQLSQQLTKI 515 Query: 255 TIAY-----------RTELKD--TQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLAN 301 ++Y EL D Q L C + A + + Q+ R L Sbjct: 516 EVSYIENMEMNIFSLEDELSDFINQLLLYCKNT-AGNKHSQQEQMDIQFNRETHWNLALK 574 Query: 302 PQIQRAFLLLDDTLELCYDVAKLSLGRSALLD--------------AAFE-RATLYRTRL 346 ++ L+++ L Y+V L L + FE + ++ Sbjct: 575 KASKKVLTLMNEISYLGYEVVNQGLNEQHQLTQKERYLFEDFFDVISTFESQKDIFYAVF 634 Query: 347 KRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLH 406 + +E +SY + FT+ + + + KE + K ++T ATL +N + Sbjct: 635 QENEENEVTWFSYKEKSPKNSFTIKRSKVDSSKFIKEKLVDKTPYILYTGATLEINQSFN 694 Query: 407 HFTSRLGIEQAESLLLPSPFDYSRQALLCV---LRNLPQTNQPGSARQLAAMLRPIIEAN 463 +F ++LG E + L++ SP+DY +QA L V L+ + ++ + + IIE + Sbjct: 695 YFETQLGEENLKELIIESPYDYKKQARLWVPKELKPIKGLSKKEYVHMVVEQVGNIIENS 754 Query: 464 NGRCFMLCTSHAMMRDLA---EQFRATMTLPVLLQGET-SKGQLLQQFVSAGNALLVATS 519 +L S+ M++++ +Q +L QG + S+ ++L++F + +L+ Sbjct: 755 VENTMVLFNSYEMLQEVYFSLQQNPVASGRELLAQGFSGSRDRMLKRFFRSTGGILLGAD 814 Query: 520 SFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQ 579 SFWEGVD+ G +LS+++I +LPF SPD P +KA+ + +PF LP A + LKQ Sbjct: 815 SFWEGVDLPGKSLSIIVITRLPFESPDRPFVKAKHRYLEQKHLNPFTIDSLPKATLRLKQ 874 Query: 580 GVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA 624 G+GRLIR D+GV+++ DNRL+ YG ++SLP ++A Sbjct: 875 GLGRLIRSEKDKGVMIVLDNRLIQTSYGKQIVSSLPKGLPIEEVA 919 >UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4FB13_9ACTN Length = 977 Score = 218 bits (556), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 208/711 (29%), Positives = 321/711 (45%), Gaps = 104/711 (14%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + + FAP G + + PG++PR Q QMAV V A+ V+EAGTG GK+ AYL P Sbjct: 284 IEERFAPGGLVNRMYPGYEPRSEQVQMAVEVRDALATSTHRVIEAGTGVGKSIAYLVPMA 343 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQ-- 114 A R K V I+T S L DQL +LP +++ + LKG +Y CL +L++ Sbjct: 344 ELARRNKVTVGIATKSNNLADQLIYHELPRLAREMDGGLTYCALKGYDHYPCLRKLDRLA 403 Query: 115 --QALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD 172 Q + P L+ + +L +++ Q+ GD + + S +T+++ C Sbjct: 404 RAQEIKTNRDPADTLTAIAVLYAFACQSPTGDFDG-LGIRWRSVNKADLTTSSRECARRL 462 Query: 173 CPMYKD-CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLP 231 CP Y D C V +R++A DVVV NH L ++ + G+++P + DEAH + Sbjct: 463 CPFYPDKCMVHGSRRRAARVDVVVTNHSLLFRNVAAE----GKILPPIRHWVVDEAHSIE 518 Query: 232 DIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGY 291 A + + +S+ D + A L + A L + A+D L + Sbjct: 519 SEARRQWAIKVSA--------DESRAVFERLGGDR-----AGALGKIARDLALSDAATLF 565 Query: 292 RGNLRELLANPQIQRAFL----LLDDTLELC--------YDVAKLSLG---RSALLDAAF 336 G + A+ QRA L L D EL YD A + +G R +++ F Sbjct: 566 MG--LTVKASSSTQRASLAMAELFDAVRELARAARSEGGYDNANMWIGNDLRDSMVWTGF 623 Query: 337 ER----------------ATLYRT-----------------RLKRLKE-----INQPGYS 358 E A+L T R++ L++ ++ Sbjct: 624 EEVGRTALDALDEATKNLASLVETVAEEKPDLVTDVADGQRRMRELRDGLRLILDGADDR 683 Query: 359 YWYEC-TSRHFT-----LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL 412 Y Y C +R L L V + E + + IF SAT++V+D HF + Sbjct: 684 YVYSCQVNRRLKAGGECLTAERLDVGEALAEEWLPEVHTAIFASATVTVSDSFDHFQHAV 743 Query: 413 GIEQ-----AESLLLPSPFDYSRQALLCVLRNLPQ-TNQPGSARQLAAMLRPIIEANNGR 466 G+++ + S+ L S +D+ R + V ++P ++ L +L + A G Sbjct: 744 GLDRISSSSSRSVHLDSSYDFERNMAVVVASDMPDPRSRDAYLSALETLLVDVHLAMGGS 803 Query: 467 CFMLCTSHAMMRDLAEQFR---ATMTLPVLLQGETSKGQLLQ-QFVSAGNALLVATSSFW 522 L T+ M +L ++ A L + Q T+ ++L+ +F+S + L A +FW Sbjct: 804 TLTLFTNRRDMEELYDRVEPRLAQRGLALDCQRRTTSAKILRDRFLSNEKSSLFALKAFW 863 Query: 523 EGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVG 582 EG D GDTL V+I KLPF SP DPL R R + LP+AV+ +KQ G Sbjct: 864 EGFDAAGDTLRCVVIPKLPFASPSDPLSCERGA----REDRAWARYSLPEAVLEVKQAAG 919 Query: 583 RLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAV-RFLAI 632 RLIR + D GVLV+ D+RLV + YG FL SL PAP R R V R+L + Sbjct: 920 RLIRTSTDAGVLVLADSRLVSKGYGKKFLNSL-PAPHQRIEVRQVGRYLEM 969 >UniRef50_A1VJJ6 Helicase c2 n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VJJ6_POLNA Length = 750 Score = 217 bits (552), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 209/706 (29%), Positives = 316/706 (44%), Gaps = 104/706 (14%) Query: 9 GQLAKAIPGFKPREPQRQM----------AVAVTQAIEKGQPLV-VEAGTGTGKTYAYLA 57 G++A PGF R Q QM A A + G L +EAGTGTGKT AY Sbjct: 52 GEVAADWPGFIARPGQYQMMQACLLTFLSAKAPEDEVRTGSHLAQLEAGTGTGKTVAYCL 111 Query: 58 PALRA----KKKVIISTGSKALQDQLYSRDLPTVSKA---LKYTGNVALLKGRSNYLCLE 110 A+ A KK VI+ST + ALQ+QL+ +DLP +++ L+Y +LKGR+ Y+C Sbjct: 112 AAIVASEVLKKTVIVSTATVALQEQLFQKDLPRLAEIIPDLRYD----ILKGRARYVCES 167 Query: 111 RLE-------QQALAGGDL-----------PVQILSDVILLRSW--------SNQTVDGD 144 RLE Q L G+L I+ D W ++ T DGD Sbjct: 168 RLEGVINDVAQDGLLTGELFQDSFGDARRQAAGIVRDRTQAMRWFKSSAKKLNSGTWDGD 227 Query: 145 ISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLAD 204 I + ++ D Q W V + C G C +++C KAR++A A + V NH L LA Sbjct: 228 IDS-LAQPPDPQDWRQVQANAHACNGGQCEHFRNCAFFKARRQAASATLQVANHALVLAT 286 Query: 205 MVVKESGFGELIPEADVM-IFDEAHQLPDIASQYFGQSL---SSRQLLDLAKDITIAYRT 260 + S LI + + +FDEAH LP IA++ F +S +LL + + + + Sbjct: 287 LQTDSS----LIDAGNTLFVFDEAHHLPGIAAEQFSYRARLGTSSKLLTSLRTVALRHGK 342 Query: 261 ELKDT---------QQLQKCADRLA---QSAQDFRL-QLGEPGYR---GNLRELLANPQI 304 L + Q + C D+LA + QD +L +P +R G + E L + Sbjct: 343 ALPASTRPDPVAFAQLVTGCTDKLAMLERYWQDAQLVSADQPVHRFAQGRIPEALVL-EC 401 Query: 305 QRAFLLLDDTLELCYDVA---------KLSLGRSALLDAAFERATLYRTRLKRLKEI--- 352 Q L+ + +A K R A E +Y +RL L ++ Sbjct: 402 QELATLIRAIASVVSSIAAALKEPDESKSPTQREEQTHAGVELG-VYLSRLGTLDKLLSA 460 Query: 353 ----NQPGYSYWYEC------TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVN 402 ++ ++ W E ++ L +P++ A + + K + + TSATL+ Sbjct: 461 WATHDRVPWAKWIEWAEDGAGSAPDAWLCASPMTAAQVLSKNLWNKVSAAVCTSATLTAC 520 Query: 403 DDLHHFTSRLGIE---QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPI 459 F G+ + SL++ SPFDY+ Q L + PG + +L L + Sbjct: 521 GSFDFFDRLSGMNRFPERRSLVVDSPFDYATQGELRIAPMTHSPKSPGFSDELCDKLPGL 580 Query: 460 IEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQF---VSAGN-ALL 515 + + +L TS M+ + VL+QG S+ +LL++ V AG +++ Sbjct: 581 LREHPHGQLVLFTSRRQMQACHAALPQDLLDQVLVQGVRSRTELLREHGRRVKAGERSII 640 Query: 516 VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVI 575 SF EG+D+ G V+IDKLPFT P P+ +A E +G DPF E+ +P A + Sbjct: 641 FGLQSFGEGIDLPGRLCEHVVIDKLPFTPPSSPVEEALAEWLSGQGRDPFAELSVPRAGM 700 Query: 576 TLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTR 621 L Q GR +R DR V+ +CD RLV YG LA LP P R Sbjct: 701 KLAQWAGRGVRTVTDRAVITVCDTRLVTMRYGQAILAGLPAFPLVR 746 >UniRef50_Q2SIT1 Rad3-related DNA helicase n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIT1_HAHCH Length = 718 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 196/693 (28%), Positives = 309/693 (44%), Gaps = 99/693 (14%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEK------------GQPLVVEAGTGTGKTYAYL----- 56 A KPR QR M + + + VVEAGTGTGKT AYL Sbjct: 19 AARNIKPRSGQRHMIAEIARYLSSIELDGEFRRSNDATTCVVEAGTGTGKTLAYLMASIP 78 Query: 57 -APALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQ 115 A ALR KK++IST + LQ Q+ R+LP +++ VAL KGR Y+CL +L+ Sbjct: 79 FAAALR--KKIVISTATVTLQQQVVQRELPLLAEHTDLEFKVALAKGRGRYICLHKLDSY 136 Query: 116 ALAGGDLPVQILS----------DVILLRSWSNQTVD----GDISTCVSVAEDSQAWPLV 161 LAG + + +L D + + N VD GD + E+S W V Sbjct: 137 -LAGQEQGILLLDGPQESSGPDVDAEAYQRFMNWMVDKGWSGDWDSAPEPIEES-LWSTV 194 Query: 162 TSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADV 221 T+ + CL C + C KA+ ++ A+++V NH L AD+ + GF PE + Sbjct: 195 TTDHRQCLNKRCSFFTQCAYYKAKMESEKAEIIVANHDLVFADLALG-GGFVLPPPEETI 253 Query: 222 MIFDEAHQLPDIASQYF----GQSLSSRQLLDLAKDI-----TIAYRTELKD-------- 264 IFDEAH + D A +F G S + L L++ + AY ++ + Sbjct: 254 YIFDEAHHMADKALNHFAFSAGLKSSQKMLRGLSRALVEGQSVFAYDEQITNRVSPMAAL 313 Query: 265 TQQLQKCADRLAQSAQD--------------FRLQLGE-PGYRGNLRELLANPQIQRAFL 309 +Q++ D +A+ + +R +G P L +A+ ++ Sbjct: 314 SQEVHHHLDAVARFLNETIEWEENDERATFQYRYPMGVIPEELRKLSAAMAD-KVGEMTK 372 Query: 310 LLDDTLELCYDVAKLSLGRSA---LLDAAFERATLYRTRLKRLKEIN-------QPGY-- 357 L+ L+ ++A+ A D A ++Y+++++ L+++ Q G+ Sbjct: 373 ELEAVLKRLRELAEKEQPGGAQRQAYDQAVMALSVYQSQVENLEDVWRIMGEEVQEGHTP 432 Query: 358 -----SYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL 412 + W + T + ++P + A ++ + + + TSATLSV ++ Sbjct: 433 TARWLTTWAKETDSDVVVHVSPTNAAHLLRKRLWSRAFGCVLTSATLSVAGRFDRLAGQV 492 Query: 413 GIEQAESLLL-PSPFDYSRQAL--LCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFM 469 G+ + + SPFD++ LC L PQ ++ A+LR I E Sbjct: 493 GLPDGSTFAIHHSPFDFNNNCTLELCDLGRDPQDSESYLEMLSQALLRIIDEKQATLVLF 552 Query: 470 LCTSHAMM--RDLAEQFRATMTLPVLLQGETSKGQLLQQFVS----AGNALLVATSSFWE 523 H R LA+ ++ ++ Q +KGQL+ S ++L +SF E Sbjct: 553 SARKHMQFAARALADTKLGSL---IITQDSGNKGQLIDTHRSRVDENKGSVLFGLASFAE 609 Query: 524 GVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGR 583 G+D+ GD L VII KLPF PDDP+ E + +GG+PF++V LPDA+ L Q GR Sbjct: 610 GLDLPGDYLKHVIIAKLPFAVPDDPVEATYAEWLKSKGGNPFNQVVLPDAITRLLQACGR 669 Query: 584 LIRDADDRGVLVICDNRLVMRPYGATFLASLPP 616 L+R D G + I D RL R YG L +LPP Sbjct: 670 LLRSERDSGKISIMDRRLWTRSYGRIILNALPP 702 >UniRef50_Q1QX31 Helicase c2 n=9 Tax=Gammaproteobacteria RepID=Q1QX31_CHRSD Length = 721 Score = 213 bits (541), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 192/659 (29%), Positives = 286/659 (43%), Gaps = 85/659 (12%) Query: 42 VVEAGTGTGKTYAYLAPAL---RAK-KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNV 97 V+EAGTGTGKT AYL AL +A+ K+++IST + ALQ+Q+ DLP + Sbjct: 66 VLEAGTGTGKTLAYLLAALPIAQARGKRLVISTATVALQEQVLHHDLPALKAHSGLDFEF 125 Query: 98 ALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR---------------SWSNQTVD 142 AL KGR YLC+ RL+Q G D P L + + ++S + Sbjct: 126 ALAKGRGRYLCVARLDQALEGGEDNPTLSLFEEAMSSGDGDDFQALAQEMADAYSAGRWE 185 Query: 143 GDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFL 202 GD + + +D+ W +T + C C + C +AR+ ADV+V NH L L Sbjct: 186 GDRDSWPTGIDDAD-WRRLTIDHRQCTNRRCGHFGACAFFRARRGLDQADVIVANHDLVL 244 Query: 203 ADMVVKESGFGELIPEAD--VMIFDEAHQLPDIASQYFGQSL----SSRQLLDLAKDITI 256 AD+ + G G ++P + +FDE H LPD A +F L + R L L K + Sbjct: 245 ADLSL---GGGLVLPSPKDCIYVFDEGHHLPDKALDHFYHRLPVNGTLRWLRTLKKSLA- 300 Query: 257 AYRTELKDTQQLQKCADRLAQSAQDFRLQLGEP---GYR--------------------- 292 T L L + L ++ +LGE G+R Sbjct: 301 ELNTALGVQPTLARLLATLPEAIAALEPRLGEAFAMGHRLAEREEGLPDDATDAVHHRFP 360 Query: 293 -GNLRELLANP--QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRL 349 G + E L+ + AF L TLE D+ + SL E+A + + L Sbjct: 361 MGRVPEALSEQAQSMVTAFAELSRTLESMADILRESLDPEKATGLPREQAESWLPLVALL 420 Query: 350 KEINQPGYSYWYECTS---------------------RHFTLALTPLSVADKFKELMAQK 388 ++ W + T + +P+S A+ + Sbjct: 421 HGRALEAHALWQAMATPDPAEGIPQARWLTFERIAGDAELTFSASPVSAAETLARHLWGT 480 Query: 389 PGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPG 447 + TSATL+ + R G+ + LPSPFDYSR L + +N+ Sbjct: 481 CHGAVVTSATLTALNRFERLQERAGLANRYRYQRLPSPFDYSRAVLSVPPEAVDPSNREA 540 Query: 448 SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQF 507 R L + + E ML +S +R + E T+ V+ Q K +LLQ+ Sbjct: 541 HERALIDFTKALDEREA--VLMLFSSRKQLRAVLEALPETVRERVVAQNHLPKRELLQRH 598 Query: 508 ---VSAG-NALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGD 563 V AG +++ +SF EG+D+ G+ L+ V+I +LPF+ PDDP+ E RGG+ Sbjct: 599 RARVDAGEGSIIFGLASFAEGIDLPGEYLTHVVITRLPFSVPDDPVGATLAEWIESRGGN 658 Query: 564 PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD 622 PF + +PDA I L Q GRLIR D+G + + D R++ R YG L SLPP R D Sbjct: 659 PFMRISVPDASIRLVQACGRLIRKEADQGRITLLDRRVLTRRYGRALLDSLPPFRREID 717 >UniRef50_B2SSY1 ATP-dependent helicase n=13 Tax=Xanthomonadaceae RepID=B2SSY1_XANOP Length = 710 Score = 211 bits (538), Expect = 6e-53, Method: Compositional matrix adjust. Identities = 203/682 (29%), Positives = 312/682 (45%), Gaps = 80/682 (11%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAI-EKGQPLVVEAGTGTGKTYAYLAP----ALRAKK 64 +L PGF R Q QM V++A+ G + EA TG GK+ YL AL KK Sbjct: 34 RLQANTPGFATRRAQSQMIGLVSRALATSGGIGIAEAPTGVGKSLGYLTAGVPIALATKK 93 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 K++ISTG+ ALQ QL RD+P KA +VAL KGR+ YLC + L G Sbjct: 94 KLVISTGTVALQSQLVERDIPAFLKATGLEASVALAKGRTRYLCTRNAAE--LEGDTSQN 151 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAW-------------PL---VTSTNDNC 168 + D L VD D++ ++ A ++ W PL +T+ C Sbjct: 152 AMFEDEQALYDRPLSPVDADLAKRLAKAYAARTWNGDLDDAPEQVSVPLRMRITTPASGC 211 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGE--LIPEADVM-IFD 225 G C C V+KAR +A +VV NH L L+ + + ++ G+ + P AD++ + D Sbjct: 212 AGRRCSYAAQCPVLKARTDVREAQIVVTNHALLLSSLSLGDAENGQPLIAPPADMLLVLD 271 Query: 226 EAHQLPDIASQYFGQSLSSRQLLDLAKD-------ITIAYRTELKDT------QQLQKCA 272 E H + +A Q ++ L D+A+ I AYR KD + + A Sbjct: 272 EGHHIAGVA---IDQGAANLPLDDMARRTGRMQILIAAAYRAVDKDKLGNLLPNEAIEVA 328 Query: 273 DRLAQSAQDF-----RLQLGEPGYRGNLRELLAN----PQIQRAFLLLDDTLELCY---- 319 R+++ + F R+ EPG R L AN PQ A L + + Sbjct: 329 ARVSRLLKAFHADVERVWKPEPGERDPLWRA-ANGKLPPQWGPAIEELGEETRALFNWVH 387 Query: 320 ------------DVAKLSLGRSA--LLDAAFERATLYRTRLKRLKEINQPGYSYWYECT- 364 D A+ L RS L+ A ++ L+ + KE QP + W + Sbjct: 388 AAHSAIAKGKQDDSAREGLQRSLGLALEMAEQQHNLWSGWRREDKE-GQPPMARWITLSR 446 Query: 365 SRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLP 423 +P+S A + ++ + S + TSATL+ D F G+ + AE L Sbjct: 447 DGDLICHCSPVSAAQVLRTMIWNEVDSVVMTSATLTGGGDFQSFAIDNGLPDHAEMASLA 506 Query: 424 SPFDYSRQALLCVLRNLPQT--NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 SPFD QA L ++ N P T ++ G +++A L ++ +L TS M +A Sbjct: 507 SPFDLPNQAEL-IVPNFPVTPDDREGHPKEVANYLVRELDWTAKGSIVLFTSRWKMEKVA 565 Query: 482 EQFRATMTLPVLLQGETSKGQLLQQF---VSAG-NALLVATSSFWEGVDVRGDTLSLVII 537 + VL+QGE +K QL+ + ++AG ++L +SF EG+D+ G+ + V+I Sbjct: 566 DLMPLAQRNRVLVQGEGNKSQLITEHLRRIAAGEGSVLFGLNSFGEGLDLPGEACTTVVI 625 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 ++PF P DP E RG + F+ + +P A+ TL Q GRLIR + D G ++I Sbjct: 626 TQVPFAVPTDPQTSTLSEWLESRGHNAFNLIAIPHALRTLTQFSGRLIRSSSDHGRVIIL 685 Query: 598 DNRLVMRPYGATFLASLPPAPR 619 D+RL+ R YG + ++PP R Sbjct: 686 DSRLLTRRYGKRIIDAMPPFKR 707 >UniRef50_A1WTY2 Helicase c2 n=1 Tax=Halorhodospira halophila SL1 RepID=A1WTY2_HALHL Length = 711 Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 198/709 (27%), Positives = 311/709 (43%), Gaps = 119/709 (16%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQP---LVVEAGTGTGKTYAYL---APALRAKK-KVI 67 +PGF+ RE Q++M V +A + P L +EA TGTGK+ +YL P R++ ++ Sbjct: 21 MPGFREREAQKRMIWEVAKAFDADHPHRLLAIEAPTGTGKSLSYLLGGVPVARSRDLPLV 80 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE-------------Q 114 I+T + LQ+Q+ +DLP +++ + + KGR YLC L Q Sbjct: 81 IATATVGLQEQILHQDLPKLARYAGIEVDATVAKGRGRYLCPRNLNELVGQSGQAESGAQ 140 Query: 115 QALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAE--DSQAW-------------- 158 QALAG +V+ W G+ ++AE D + W Sbjct: 141 QALAG---------EVLGTARWPRPPQPGEPEQLQAMAEALDGERWGGDLDEWADGVADD 191 Query: 159 --PLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI 216 P++TST+ +C G C ++ C V AR + A+VV+ NH L LAD+ + E G L+ Sbjct: 192 LRPMITSTSHSCSGRRCAHFEGCPVYAARDRVARAEVVITNHDLLLADLQLGEEQGGVLL 251 Query: 217 --PEADVMIFDEAHQLPDIASQYFGQSL---SSRQLLDLAKDITIAYRTELKD------- 264 PE + + DE H L A Q F S ++R L+ + + L D Sbjct: 252 PPPEQALYVIDEGHHLAAKAVQRFAASARVQAARTWLEEGEGVATDTAAVLPDDTAGEPP 311 Query: 265 ---TQQLQKCADRLAQSAQDFRLQLGEPGYRGN----------------LREL---LANP 302 Q+LQ+ +A + Q+ L + YR + +REL +A+P Sbjct: 312 DAEAQRLQERLSEVAAALQEADTFL-QHNYRADAEGERWRFRAGQAPDPVRELAGRVADP 370 Query: 303 Q--IQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ------ 354 + A D + Y + G + L+ R R R L Q Sbjct: 371 ARGLHEALQAFTDRV---YSALEAQRGDTQELERQLPRLGFLRERAANLATTWQLLGEQE 427 Query: 355 ----PGYSYWYECTSRH-----FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDL 405 P + W E + ++++P+SVA + + + + TSATL Sbjct: 428 AAGVPPVARWVERQAESDGAVDHRVSVSPVSVAGELARRLWDRCAGAVITSATLRALGRF 487 Query: 406 HHFTSRLGIEQAESLL----LPSPFDYSRQAL-LCVLRNLPQTNQPGSA---RQLAAMLR 457 H S LG+ + ++L+ LPSPFDYSR L + LR+ P+ + A + L +L Sbjct: 488 DHLRSDLGLPEDDALISQGWLPSPFDYSRSLLHVPALRSDPRNAEAHLAEVCQWLPELLD 547 Query: 458 PIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQF---VSAG-NA 513 P A +L TS M +A+ T+ + QGE S+ +L++ V AG + Sbjct: 548 PYEAA-----LVLFTSRQRMERVAQALPETLREQLQCQGERSREAMLERHREAVDAGQGS 602 Query: 514 LLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDA 573 +L + EGVD+ G V+I+++PF P +P++ E + F + LP A Sbjct: 603 ILFGLAGMAEGVDLPGRYCDHVVIERIPFGVPTEPVIATLGEWLEDQQRSSFHTLSLPRA 662 Query: 574 VITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD 622 + L Q GRL+R DDRG + I D R+V + YG L +LPP R D Sbjct: 663 SLRLIQACGRLVRSEDDRGRITILDRRVVTQRYGRQLLDALPPFRRRLD 711 >UniRef50_D1Y8P3 DNA polymerase III, epsilon subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y8P3_9BACT Length = 646 Score = 208 bits (530), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 189/659 (28%), Positives = 296/659 (44%), Gaps = 65/659 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVV-EAGTGTGKTYAYLAPA 59 M D F P+G L +P F+ R QR++A + ++ + L+ EA TG GKTYA L PA Sbjct: 1 MEDFFGPEGILNARLPNFEYRRQQRELAEKIENFLQSDRRLLAAEAPTGVGKTYAMLIPA 60 Query: 60 LR----AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQ 115 +R V++ T LQ+QL +D+P + L LLKGR NY C+ + + Sbjct: 61 MRWAVANNSTVLVLTSGITLQEQLIYKDIPALLDVLGLDLPYGLLKGRGNYACIRKAREI 120 Query: 116 ALAG----GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGS 171 G G Q D+ W T GD+S +S+ + A + S+ CLG Sbjct: 121 GAEGFLDFGGDKGQASRDI---SGWLYATETGDLSE-LSLGDTHPARERIASSYLTCLGP 176 Query: 172 DCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLP 231 CP ++ CF K + V+V N+H++ + ++ + F ++I DEAH++ Sbjct: 177 YCPHHERCFYNKVMRSLSHWRVIVANYHVYFSYVLGQRKPFPAPF---GLLICDEAHKME 233 Query: 232 DIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDF--------- 282 D A + R L + + E + + ADR A+ D Sbjct: 234 DAARAVTQVGVDVRDWQRLLRRAPRLDKVEASLLRSVDCPADRFAEEVADLSRVSESVFD 293 Query: 283 ----RLQLGE------PGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSL-----G 327 RL G+ P + + ELL + R LD+ E + + G Sbjct: 294 QLAARLPDGKNFTAYPPELKNDTAELLV--KCDRIIGHLDELQEAAAGGGRDANALQDDG 351 Query: 328 RSALLDAAFERATLYRTRLKRLKEI-NQPGYSYWYECTSRHFTLALTPLSVADKFKELMA 386 R A+ + T +R L+ + N P ++YW E S L + ++ +D Sbjct: 352 RIAVWNGEL---TAFRDSLRWCCDTQNYPEWAYWREGGS----LKSSCVNGSDLIPPAFD 404 Query: 387 QKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQP 446 I SAT++V+ ++ + G+ E+ +L SPFD + V+ Q P Sbjct: 405 DDEIKVIALSATMTVDRSFEYWANETGLAPDETAVLDSPFDLPSLMEIDVVDLGLQVMSP 464 Query: 447 GSARQLAAMLRPIIEANNGRCFML-------CTSHAMMRDLAEQFRATMTLPVLLQGETS 499 G A +A + R N G +L A ++ AE+ R L +L+QG+ Sbjct: 465 GYADAVARVCRKYARENGGATLILLSSRRLLTAVSAYLKMNAEKDR----LNILVQGDLP 520 Query: 500 KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRL 559 + +LL+ F ++LV +SF EG+DV G+ L+ VIID++PF P DP+ +AR +L Sbjct: 521 RTELLELFKENERSVLVGMASFREGIDVPGEALTQVIIDRIPFPHPGDPVGEAR---AKL 577 Query: 560 RGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 G + F + LP A + L+Q GRL+R DRG +VI D R+V RP L SLP P Sbjct: 578 EGRENFVKAVLPGAKMQLRQAAGRLVRTGSDRGRVVILDGRIVTRP-DWKILDSLPAVP 635 >UniRef50_B4RPD7 DinG n=35 Tax=Proteobacteria RepID=B4RPD7_NEIG2 Length = 744 Score = 206 bits (524), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 208/704 (29%), Positives = 307/704 (43%), Gaps = 99/704 (14%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAI-------EKGQP--------LVVEAGTGTGKTYA 54 + K +PGF+PR QR+M AV A E G+P V+E TG GK+ A Sbjct: 44 NIGKNLPGFRPRASQREMIAAVANAFSRTLTREEGGEPPKREGESIAVIEGPTGVGKSLA 103 Query: 55 YL-APALRAK---KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLE 110 YL A + A+ K++I+S+ + ALQ+QL RDLP + + AL KGR YLC Sbjct: 104 YLLAGGIMAQTRGKRLIVSSATVALQEQLVDRDLPFLVEKSGLELTFALAKGRGRYLCPY 163 Query: 111 RL-------EQQALAGGDLPVQIL------SDVILLR----SWSNQTVDGDISTCVSVAE 153 +L QQ L G + P + ++ LLR +S + +GD + Sbjct: 164 KLYQLTQSNAQQNLLGFEAPAVLWDSKPKPEELKLLRDIADEFSARRFNGDRDAWPEKID 223 Query: 154 DSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG 213 D+ W VT+ CL + CP +C AR DVVV NH L LAD+ + G G Sbjct: 224 DA-IWLKVTNDRHGCLKAACPNRPECPFYLARDMLETVDVVVANHDLLLADISM---GGG 279 Query: 214 ELIP--EADVMIFDEAHQLPDIA-SQYFGQSLSSRQLLDLAKDITIAYR-TELKDTQQLQ 269 ++P E DEAH LP A S++ + + + L K + + L D +L Sbjct: 280 VILPAPENSFYCIDEAHHLPKKALSRFAAEHSWNIAVWTLEKLPQLTGKIAALTDKAELA 339 Query: 270 KCADRLAQSAQD----FRLQLGEP-----GYRGNLRELLANPQIQRAFLLLDDTLELCYD 320 AD A S D ++ L E G N R + P + + LE Sbjct: 340 NLADEAAASLLDSLHEWQFHLAEEPSLSMGLSENDRRTNSEPTWLWEDGKIPEGLETTVS 399 Query: 321 ---VAKLSLGR-------------------SALLDAAFERATLYRTRLKR-------LKE 351 +A SL + AL+D L+ R+++ L Sbjct: 400 NTAIAARSLLKHVVGLNDALSATRREKEQDGALIDRLTGEFGLFIARIEQISAVWDLLST 459 Query: 352 INQPGYSYWYECTSRH------FTLALTPLSVADKFKELMAQKPGSWIFTSATL----SV 401 ++ G + +R + +P+S A + ++ + TSATL S Sbjct: 460 VSIEGEEPLAKWIARRADDKNDYIFNASPISSASHLANSLWRRAAGAVLTSATLQSLGSF 519 Query: 402 NDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCV--LRNLPQTNQPGSARQLAAMLRPI 459 N L T L + + +L L SPFD+ +Q L + + P+ + +A + + + I Sbjct: 520 NLILRQ-TGLLWLPETTTLALKSPFDFEKQGELYIPSIYASPKDPEAHTAAVIEWLPKLI 578 Query: 460 IEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQ---QFVSAGNA-LL 515 +L +S M+D+A +L+QGE K LLQ Q + G A ++ Sbjct: 579 SPTEAIGTLVLFSSRKQMQDVALHLPGDYLPLLLVQGELPKAVLLQKHHQAIEEGKASII 638 Query: 516 VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVI 575 SF EG+D+ G VII KLPF PD+P+ K + RGG+PF E+ +P+A I Sbjct: 639 FGLDSFAEGLDLPGTACVQVIIAKLPFAMPDNPIEKTQNRWIEQRGGNPFIEITVPEAGI 698 Query: 576 TLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPR 619 L Q VGRLIR D G + I DNR+ + YG LA LPP R Sbjct: 699 KLIQAVGRLIRTEQDYGRVTILDNRIKTQRYGQQLLAGLPPFKR 742 >UniRef50_A5CX48 ATP-dependent DNA helicase DinG n=3 Tax=Gammaproteobacteria RepID=A5CX48_VESOH Length = 686 Score = 205 bits (522), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 181/674 (26%), Positives = 304/674 (45%), Gaps = 78/674 (11%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAI-----EKGQPLVVEAGTGTGKTYAYLAPALRA-- 62 L + + GF R+ Q +M +++ + L VEA TG GKT+AYL ++ Sbjct: 16 NLKENMNGFITRQAQNKMIAEISKTLSGEYKNSHNILCVEAPTGIGKTFAYLLGSIHIAK 75 Query: 63 --KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL-------- 112 KKK+IIS+ + ALQ+QL+ +D+P + L+KGRS Y+C+ L Sbjct: 76 ANKKKLIISSANVALQEQLFFKDIPQAQQYCCVDFEYTLIKGRSRYVCIRNLINICEDNK 135 Query: 113 ------EQQALAGG---DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTS 163 E L + P++ LS +L ++S + +G+I + S W + Sbjct: 136 NDNPLFESMPLFDKPPEEYPLEQLSK--MLYNYSTKKWNGEIDDLIPTTNHS-IWQQIAC 192 Query: 164 TNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEA--DV 221 C +C YKDC K R+K ADV+V NH L LAD+ S ++P+ + Sbjct: 193 NRFTCTVKNCEFYKDCAFFKTRQKITKADVIVANHDLVLADL----STGNTVLPDVSKSI 248 Query: 222 MIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQ------LQKCADRL 275 IFDEAH L A +F + S+ + K T K ++Q +++ + + Sbjct: 249 FIFDEAHHLNSKALSHFSLTTSTEFIKTSVKQTKEVSETLCKISKQNIPNINIKQIDNYI 308 Query: 276 AQSAQDF-RLQLGEPGYRGNLRELLANP--QIQRAFLLLDDTL--------ELCYDVAKL 324 Q +L+ E Y N + ++ P QI R L L + + E D K Sbjct: 309 TDLIQLLEQLKFNENIYLFN-QGVIDEPIKQISRNILTLIEIIQTKFTLLKEFWSDYLKK 367 Query: 325 SLGRSALLDAAFERA-----------TLYRTRLKRLKEINQPGYSYWYE----CTSR--H 367 ++ ++ A L+ + L ++ E N+ S W + TS+ + Sbjct: 368 TVINKSIHGPINNMAGQCEQHLLSIIALFSSFL-QIDEPNKIPNSRWIKKSILTTSKRTN 426 Query: 368 FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES--LLLPSP 425 + L +++ L+ K I TSATL+ +LG+ + E+ L LPSP Sbjct: 427 YLLNSAQTDISENLDHLIWSKASGAILTSATLTSLGSFERLNKQLGLLRNENQYLRLPSP 486 Query: 426 FDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR 485 F +++ L+ T ++ L ++++ G +L TS+ M+ +A Sbjct: 487 FMFNQVDLIIAKLKASPTQVYEHTQETTLQLLKRLDSDEG-SLVLFTSNKQMQIVANLID 545 Query: 486 ATMTLPVLLQGETSKGQLLQQFVS----AGNALLVATSSFWEGVDVRGDTLSLVIIDKLP 541 + + +QGE K +L++ ++ +++ SF EG+D++G+ L+ VII KL Sbjct: 546 KKLNCTLFIQGEYPKKNILKKHINLRKQGKGSIIFGLDSFSEGIDLKGNNLTHVIITKLR 605 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 F+ P P+ + + + +PF E+ LPDA + L Q GRLIR D G + I DNRL Sbjct: 606 FSVPTSPIDRTLATYLKSQNRNPFMEISLPDASLKLIQACGRLIRTETDVGKITIFDNRL 665 Query: 602 VMRPYGATFLASLP 615 + + YG L +LP Sbjct: 666 ISKFYGKLLLNALP 679 >UniRef50_B8CRB2 Helicase c2 n=45 Tax=Gammaproteobacteria RepID=B8CRB2_SHEPW Length = 701 Score = 204 bits (519), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 187/689 (27%), Positives = 319/689 (46%), Gaps = 96/689 (13%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAI-----EKGQPLVVEAGTGTGKTYAYLAP----ALR 61 +A ++P F+ R Q + +++ + ++ + +VVEAGTG GK+ AY+ AL Sbjct: 28 IASSLPNFRSRREQNYIVAEISKTLAGEYDKQRRIIVVEAGTGIGKSLAYILGTIPLALA 87 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 +KKKV I+T + ALQ+QL +DLP + L+KGR Y+CL +LE L G D Sbjct: 88 SKKKVCIATATVALQEQLLHKDLPFFLQHSGLDFTFGLVKGRQRYVCLSKLEM--LVGPD 145 Query: 122 ----------LPVQILSDVI--LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCL 169 P Q D++ LL+ + +G+ T D W + +C Sbjct: 146 NSSQMAMWQSKPDQSQVDMLEGLLKDFKESRWNGERDTLTKPLPD-HLWQQIACDKHSC- 203 Query: 170 GSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD--VMIFDEA 227 +++C KAR+ DV++ NH L AD+ E G G ++P+ + + DEA Sbjct: 204 HKQLASHRNCPFHKAREDIDTWDVLIANHSLLFADL---ELGGGVILPDPEDLYYVIDEA 260 Query: 228 HQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQK--CADRLAQSAQDFRLQ 285 H LP +A + + R D + +T K T +LQ ++ + AQ Sbjct: 261 HHLPIVARDFSSAQATIRGASDWLEKLT-------KTTSKLQNQIKSNYIIAPAQAMLDH 313 Query: 286 LGEPGYRGNLREL----------LANPQ---------IQRAFLLLDDTLELCYDVAKLSL 326 +G+ G L ++ NP+ + A L+L + L +VA Sbjct: 314 IGD--ISGLLNQVAHFCDAQAKQFDNPENRFRFEHGKLPPALLILAENLATASNVALKQF 371 Query: 327 GRS-ALLDAAFE---------RATLYRT-----RLKRLKEI--------NQPG--YSYWY 361 + ALL+ A + A L T R++ L+++ N G + W Sbjct: 372 NKMLALLNEAIKDGDIPKHLSEALLSETGFMLQRIENLQKLWRMMAKQDNPKGAPMARWI 431 Query: 362 E-CTSRH--FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI---E 415 E T + + + +P+ V + L+ K + SATL ++ +HFT ++G+ + Sbjct: 432 EQLTGKQSDYLFSASPIEVGFMLENLLWDKAAGVVLCSATLRALNNFNHFTHQVGLSIND 491 Query: 416 QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 + L L SPFD+ + A L + + + +LA + ++E + +L S+ Sbjct: 492 GSRYLALDSPFDFEQNATLFLPQMDTEPTHDNYTDELAKQIIALVE-DEMASLVLFASYW 550 Query: 476 MMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGN----ALLVATSSFWEGVDVRGDT 531 M +A+ + +L+QG + ++L++ + + +++ T SF EG+D+ GD Sbjct: 551 QMEKVADLVENKIKTNLLIQGTLPRQEILKRHKALCDDTKPSIIFGTGSFSEGLDLPGDY 610 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 L+ +II KLPF P P+ +A E +++GG+PF ++ +PDA L Q GRL+R D Sbjct: 611 LTNLIITKLPFAVPTSPVEQAHSEYIKIKGGNPFLQLTIPDASRKLVQSCGRLLRKEQDY 670 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAPRT 620 G + I D RLV + YG + L +LPP R Sbjct: 671 GRISILDRRLVTKRYGKSLLDALPPFRRV 699 >UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHF7_9ACTN Length = 1045 Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 203/708 (28%), Positives = 301/708 (42%), Gaps = 125/708 (17%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----AL 60 F G + + G++PR Q+ MA V +A LVVEAGTG GK+ AYL P AL Sbjct: 340 FDARGVVGEMYAGYEPRMEQKIMASEVLRAFSTSTNLVVEAGTGVGKSMAYLLPSAMAAL 399 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTG----NVALLKGRSNYLCLERLEQQA 116 R V ++T + AL DQ+ ++LP + AL G LKG +Y CL R++ Sbjct: 400 RNGIPVGVATKTNALLDQIVYKELPLLHDALAAKGFGDLQYVALKGFRHYPCLLRIDSVM 459 Query: 117 --------LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWP--LVTSTND 166 ++G D+ Q S +L S+ QT DI + D + P VT+ + Sbjct: 460 RDGVHDVNVSGRDIS-QAPSLAGML-SFIEQTEYDDID---GLKIDYRVLPRYAVTTESR 514 Query: 167 NCLGSDCPMYKD-CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFD 225 +CL CP Y CFV +RKKA + +VV NH LF D S G L+P+A + D Sbjct: 515 DCLRRKCPFYGTYCFVHGSRKKAERSHIVVTNHSLFFRDA----SSDGSLLPKAPFWVVD 570 Query: 226 EAHQ------------------------------------------------LPDIASQY 237 EAH LP+ ++ + Sbjct: 571 EAHGAEAEARRALSVSLDASEMLRLSRRLASDEGARNPFVRLERRAPECEAVLPEASTLF 630 Query: 238 FGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE--------- 288 FG + +++ KD +A + + L CA + + F L + + Sbjct: 631 FGLTEKAKKR---GKDFAVAAASFAHGMKDLSACATQQDRRYDVFDLWINDDVRACDAFV 687 Query: 289 ------PGYRGNLRELLANPQIQRAFLLLDDTL-ELCYDVAKLSLGRSALLDAAFERATL 341 +R L ++ AFL D L ++ D+A +++ ++L A Sbjct: 688 ELVKKASQFREAAERLASSGSELVAFLEETDGLGDVQRDIATIAIDVKSMLQAC------ 741 Query: 342 YRTRLKRLKEINQPGYSYWYECTSR--HFTLALTPL--SVADKFKELMAQKPGSWIFTSA 397 + + E Y Y + + H L + V + + + ++ S ++ SA Sbjct: 742 -----EAIMETPDRNYVYSAHVSRKPEHVAERLEAMLIDVGQELDQTLYERTRSIVYASA 796 Query: 398 TLSVNDDLHHFTSRLGI-----EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQL 452 TLSV F +G+ + LL S +D+ + VL ++P P L Sbjct: 797 TLSVGHGFSSFNRAMGLGGDGPARVNECLLGSSYDFENHMRVFVLNDIPDPRDPAYLPIL 856 Query: 453 AAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT---LPVLLQ--GETSKGQLLQQF 507 +L A G L T+ M + M L V+ Q G ++KG L +F Sbjct: 857 EGLLARAHIAQGGSMLTLFTNRREMETCFDDINPRMKEEGLRVVCQKWGVSTKG-LRDEF 915 Query: 508 VSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDE 567 ++ L A SFWEG D G TL VII +LPF+SP+DPL K R R +G + + Sbjct: 916 IANETLSLFALKSFWEGFDAPGSTLKGVIIPRLPFSSPNDPLSKERA--AREKGA--WSK 971 Query: 568 VQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 LP AVI LKQ GRLIR + D G+L++ D RLV YG TFL SLP Sbjct: 972 YCLPAAVIDLKQAAGRLIRSSTDTGILILADRRLVTMGYGRTFLRSLP 1019 >UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D091_MYXXD Length = 988 Score = 200 bits (508), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 179/664 (26%), Positives = 285/664 (42%), Gaps = 83/664 (12%) Query: 9 GQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKK 64 G L +A GF R Q +A AV +A+ G L +EAGTGTGK+ AYLAP A R + Sbjct: 283 GALEQAGEGFMSRAAQLDVAQAVARALSDGGQLAMEAGTGTGKSLAYLAPAALFAARNGR 342 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 KV ++ +K LQDQL +DLP + +A K ALLKG++NYLC R + + Sbjct: 343 KVGVAPHTKTLQDQLLEKDLPRLHRATKGAFGYALLKGQTNYLCRRRALEATRVEPGMGH 402 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDS-----QAWPLVTSTNDNCLGSDCPMYKDC 179 + LR++ ++ +GD+ + P V S LG CP + C Sbjct: 403 SARAPRAYLRAYLRRSGEGDLDRLSHWFRERFPVLMALVPAVRSEASTTLGEKCPHFHRC 462 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 F A +A +ADV+++N L A + P+ D ++ DEAH++ D+A+ Sbjct: 463 FYHSAVAQAREADVLIINQSLAFA--------WPARYPKLDHLVLDEAHEVEDVATTALT 514 Query: 240 QSLSSRQLL-----------------DLAKDITIAYRTELKD-TQQLQKCADRLAQSAQD 281 LS L +L K ++ + RTE + +++ RL A+D Sbjct: 515 LELSDLAFLRLIERLHGRDGRRGLFAELRKALSASRRTETRSLMGEVEDGLRRLLDDARD 574 Query: 282 FRLQLGE-------------------PGYR--GNLRELLANPQIQRAFLLLDDTLELCYD 320 ++ E P R +R L A ++ + L+ + Sbjct: 575 LGARVTELCEPTATAVGEDPDEGAYSPELRITATVRTLPAWEPVREGLEGVRGALQALHV 634 Query: 321 VAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ-------------PG--YSYWYECTS 365 + + + +AL + A + L R E+ + PG Y+ E Sbjct: 635 LLSVRV-LAALPELAARQPALERELSGATTELGELAVLAGELSGEAAPGRCYAATAEPKR 693 Query: 366 RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLP-- 423 + ++L+ P+ V+ + A+ + + SATL D RLG++ P Sbjct: 694 QRWSLSAQPVDVSAYVSKDFAESKRTLVLASATLGTGDGFPFVLRRLGLDGRGGRPAPRL 753 Query: 424 ----SPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 +PF QAL+ ++ + P+ ++ + + + + GR L S M Sbjct: 754 VRAATPFKLHEQALVVLVTDAPRAHEEAFVEWASLRISGLAQTMGGRVLGLFASTRRMER 813 Query: 480 LAEQFRAT---MTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 + R + + VL Q L + +L+ T SFW+GVD+ G + V Sbjct: 814 VGTSVRGRLDPLGIEVLRQSRGHSRSLAARQEKDTGTVLLGTKSFWQGVDIPGRGVGCVF 873 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGD--PFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 IDKLP PL+ AR E GG+ F +LP A++ L+QGVGRLIR DRGV+ Sbjct: 874 IDKLPLEPAMRPLVAAREEPLSRSGGEYMGFLHYRLPRALLQLRQGVGRLIRATTDRGVV 933 Query: 595 VICD 598 +I D Sbjct: 934 IISD 937 >UniRef50_P27296 Probable ATP-dependent helicase dinG n=174 Tax=Enterobacteriaceae RepID=DING_ECOLI Length = 716 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 202/702 (28%), Positives = 313/702 (44%), Gaps = 122/702 (17%) Query: 11 LAKAIPGFKPREPQRQMA--VAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKK 64 L + IP F PR PQRQM VA T A E+G+ L +EA TG GKT +YL P + +K Sbjct: 18 LQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQK 77 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKA---LKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 +++ST + ALQDQ+YS+DLP + K LK+T GR Y+C L ALA + Sbjct: 78 TLVVSTANVALQDQIYSKDLPLLKKIIPDLKFTAAF----GRGRYVCPRNL--TALASTE 131 Query: 122 LPVQ-----ILSDVILLRSWSNQT----VDGDISTC--------VSVAEDSQAWPLVTST 164 P Q L D + + Q + GD+ T +A D W +++ Sbjct: 132 -PTQQDLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTD 190 Query: 165 NDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIF 224 +CL +C Y++C AR++ +A+VVV NH L +A M ES P+ +++ Sbjct: 191 KASCLNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDPKNLLLVL 247 Query: 225 DEAHQLPDIASQYFGQSLSSRQLLDLAKDITIA-YRTELKDTQQLQKCADRLAQSAQDFR 283 DE H LPD+A R L+++ +IT YR +L +L +A + FR Sbjct: 248 DEGHHLPDVA----------RDALEMSAEITAPWYRLQLDLFTKL------VATCMEQFR 291 Query: 284 LQLGEP--------GYRGNLRELLAN---------PQIQRAFL------LLDDTLELCYD 320 + P + L EL+A+ P Q A L D+ LE+C Sbjct: 292 PKTIPPLAIPERLNAHCEELYELIASLNNILNLYMPAGQEAEHRFAMGELPDEVLEICQR 351 Query: 321 VAKLSLGRSALLD----------AAFERATLYR---------------TRLKRLKEINQP 355 +AKL+ L + + + L+R ++L RL + Q Sbjct: 352 LAKLTEMLRGLAELFLNDLSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQS 411 Query: 356 G---YSYWYECTSR----HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHF 408 + W R H + V+D+ + L+ + I TSATL + Sbjct: 412 SGAPVTKWATREEREGQLHLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRL 471 Query: 409 TSRLGIEQAES---LLLPSPFDYSRQALLCV--LRNLPQT-NQPGSARQLAAMLRPIIEA 462 G+++ + L SPF++ Q + + +R P N+ ++AA R +E+ Sbjct: 472 QEMSGLKEKAGDRFVALDSPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVES 531 Query: 463 NN--GRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQ----QFVSAGNALLV 516 G + + AM R L + + L +L+QG+ + +L++ + + ++LV Sbjct: 532 KKHLGMLVLFASGRAMQRFL--DYVTDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLV 589 Query: 517 ATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVIT 576 SF EG+D++GD LS V I K+ F D P++ E + PF+ LP A Sbjct: 590 GLQSFAEGLDLKGDLLSQVHIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFN 649 Query: 577 LKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 L Q VGRLIR G +VI D RL+ + YG L +LP P Sbjct: 650 LIQQVGRLIRSHGCWGEVVIYDKRLLTKNYGKRLLDALPVFP 691 >UniRef50_C1MEF3 DNA helicase n=1 Tax=Citrobacter sp. 30_2 RepID=C1MEF3_9ENTR Length = 690 Score = 199 bits (507), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 186/675 (27%), Positives = 292/675 (43%), Gaps = 85/675 (12%) Query: 17 GFKPREPQRQM------AVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKKKV 66 G PR Q M V T + E+ + V+EAGTGTGKT Y P A+ K + Sbjct: 26 GLSPRAGQVDMMAFCSEVVNATPSEEQYRVGVIEAGTGTGKTLGYCLPLIPLAMEKHKTL 85 Query: 67 IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLER----LEQQALAGGDL 122 IIST + ALQ+Q+ S+DLP + + + A+ KGRS Y C R +E + A G + Sbjct: 86 IISTATVALQEQIISKDLPEIQARAGLSFSYAMAKGRSRYFCQMRCDVHMESEMNAYGYI 145 Query: 123 --PVQILSDVILLRSWSNQ--TVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 V+ +S W+ + + +IS V W V + C CP Y Sbjct: 146 RDDVEDISKAFAGGHWTGERDSYPDEISEAV--------WGRVNAIGSQCPKKRCPHYHR 197 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIP--EADVMIFDEAHQLPDIASQ 236 C AR DVV+ NH + L+D+ + G G ++P E + +FDE H +P A Sbjct: 198 CPFFLARALLDSVDVVIANHDIVLSDLSL---GGGIILPPQEESIYVFDEGHHVPQKAIN 254 Query: 237 YFGQSLS---SR----QLLDLAKDITIAYRTEL-KDTQQLQKCADRLAQSAQDFRLQLGE 288 +F S S SR ++ D+ + +Y + + QQL + A D R L Sbjct: 255 HFATSASLDASRHFMAEIFDMVMTMPESYGGTMEQHVQQLVEFAGHAGNELGDLRGTLLR 314 Query: 289 P-----------GYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFE 337 G ++ + L L+ ++ + + +A++D A Sbjct: 315 SLNWRSDHDMPNGVESDIYRFPEGFVPEAIAALFSPALKTVNEMQNIVVKMTAIVDEAGR 374 Query: 338 RATLYRTRLK---------RLKEINQPGYSY-------------WYECT----SRHFTLA 371 + L+ RL ++Q SY W S + Sbjct: 375 DISEDDLALQKMAVGELANRLAGMHQALASYCGNKTVSGMPMARWINVRRTKRSTEVVIN 434 Query: 372 LTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSR 430 +P+ + K + K + I TSAT+ F + G+ +LL SPFDY Sbjct: 435 CSPVYAGEHLKSELWSKAYATIVTSATIRSLSKFDAFLEQAGLPVDTPTLLARSPFDYQN 494 Query: 431 QALLCV--LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 +L + +R++P TN ++ +L ++ G C +L S M ++++ + Sbjct: 495 NGVLFIPRMRSVP-TNHEEHTAEIIELLPKLVLRLQG-CLVLFASRRQMEEVSKAMPQHI 552 Query: 489 TLPVLLQGETSKGQLLQQF---VSAGN-ALLVATSSFWEGVDVRGDTLSLVIIDKLPFTS 544 + +L+QG K ++L + + G +++ +SF EGVD+ G + VII KLPF+ Sbjct: 553 SPLLLIQGALPKREILLRHKLRIDRGEPSIIFGMASFSEGVDLPGVYCNNVIIAKLPFSV 612 Query: 545 PDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMR 604 P DP+ + E G D F E+ +P+A + L Q VGRLIR D G + I D RL + Sbjct: 613 PTDPVGQTLTEWLEKNGRDAFREISIPEACLKLTQSVGRLIRTESDTGAVTILDKRLKTK 672 Query: 605 PYGATFLASLPPAPR 619 YG LASLPP R Sbjct: 673 AYGKDILASLPPFRR 687 >UniRef50_Q8L2A4 DNA helicase n=1 Tax=Proteus vulgaris RepID=Q8L2A4_PROVU Length = 688 Score = 197 bits (501), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 171/637 (26%), Positives = 279/637 (43%), Gaps = 72/637 (11%) Query: 42 VVEAGTGTGKTYAY---LAPALRAKKK-VIISTGSKALQDQLYSRDLPTVSKALKYTGNV 97 V+EAGTGTGKT Y L P +AK+K +I+ST + ALQ+Q+ +DLP + + Sbjct: 61 VIEAGTGTGKTLGYSIPLIPLAQAKEKTLILSTATVALQEQVVHKDLPDIRASAGLDFTF 120 Query: 98 ALLKGRSNYLCLERLEQQA------LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSV 151 A+ KGR Y C R ++A D ++IL+D + + +GD T V Sbjct: 121 AMAKGRGRYFCKLRAAREAEKEMELFGFQDETIKILTD-----EFDDDLWNGDRDT-YPV 174 Query: 152 AEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESG 211 + W + C CP +K C KAR + DV++ NH + +AD+ + G Sbjct: 175 EITDKIWQKANAVAGQCPAHHCPHFKSCPFYKARDEMDSVDVIIANHDIVMADLSL---G 231 Query: 212 FGELIPEAD--VMIFDEAHQLPDIASQYFGQSLS-------SRQLLDLAKDITIAYRTEL 262 G ++PE + +FDE H L A +F + S S ++ D+ + +Y + Sbjct: 232 GGVVLPEPKNCIYVFDEGHHLTSKAISHFSSTCSLDAAIKWSDEIFDMVIPLVDSYDDNM 291 Query: 263 KD-TQQLQKCADRLAQS---AQDFRLQ----LGEPGYR---------------------G 293 + L A L + ++F L+ GE R G Sbjct: 292 ERYATTLNSLASELKKELVLTKEFLLRNLPFKGEYDNRQTCIFPRGETPHEVIHYAKTVG 351 Query: 294 NLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEIN 353 + E L N + ++ D K+ +G LD + + + + Sbjct: 352 KVLEELKNTNGKMTAIIEDKAKGPEGGEHKMIVGE---LDNKLSTLVTAWAQFVNVNKRD 408 Query: 354 QPG--YSYWYECT---SRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHF 408 + G ++ W + + +P+ + K ++ + + I TSAT+ + Sbjct: 409 KQGIPFARWVDVNRDKKNEIVINSSPVHAGEMLKSIVWKDAHAAIITSATIRSLGKFDAY 468 Query: 409 TSRLGI-EQAESLLLPSPFDYSRQALLCVLR-NLPQTNQPGSARQLAAMLRPIIEANNGR 466 + G+ +LL SPFDY +L + + + ++ ++L ++ G Sbjct: 469 LDQAGLPADTPTLLAQSPFDYENNGVLFIPKMKFSPKDSAAHTTEVGSLLPTLVLRKRG- 527 Query: 467 CFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQF---VSAGN-ALLVATSSFW 522 C +L S M ++ E + +L+QG K +++ + + G+ +++ SSF Sbjct: 528 CLVLFASKKQMTEVFEMMPDDIQDKILMQGSIPKSEIVSRHKLRIDRGDDSIIFGMSSFS 587 Query: 523 EGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVG 582 EGVD+ GD + VII KLPF P DP+ E G + F+E+ +PDA I L Q VG Sbjct: 588 EGVDLPGDYCNNVIIAKLPFMVPTDPVSLTLAEWMESVGRNTFEEISVPDACIKLIQSVG 647 Query: 583 RLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPR 619 RLIR D G + I DNRLV + YGA L SLPP R Sbjct: 648 RLIRTEQDTGAVTILDNRLVTKRYGAGILDSLPPFKR 684 >UniRef50_Q67KS2 ATP-dependent helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67KS2_SYMTH Length = 656 Score = 196 bits (498), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 201/649 (30%), Positives = 317/649 (48%), Gaps = 69/649 (10%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---RAKKK-VIISTGS 72 GF+ RE Q A + +A+ +G L+ EAG GTGKT+AYL PA+ R + + V++++ S Sbjct: 38 GFEVREEQIYTAFRIARALTEGSTLLAEAGPGTGKTFAYLLPAVCHARMRGRPVVVASAS 97 Query: 73 KALQDQLYS--RDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 L+ QL D+ T+S+ L +V + ++Y+C ++E G+ P + S++ Sbjct: 98 SVLKAQLTGPDGDIQTLSRLLNLDIDVRVAGNPADYVCEMKVEAGDFGSGEEP-EGWSEL 156 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD-CPMYKDCFVVKARKKAM 189 I W+ +T G S V +D W LV+ D L D CP C +V AR++ Sbjct: 157 I---HWARRTGTGARSEVPGVPDD--LWELVSW--DPSLNCDTCPRRGHCLMVAARRQHR 209 Query: 190 DA-DVVVVNHHLFLADMVVK----ESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 A D+VV +H LF D++ + E G ++P +IFDE H P+ + G SLS Sbjct: 210 AAADLVVCDHRLFAQDLLTRNDLLEGGMLPILPSYSAVIFDEGHHFPETWQRAQGWSLSQ 269 Query: 245 RQLLDLAKDIT-------IAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRE 297 R+L + + +A+R E AD Q A D + GE + E Sbjct: 270 RRLRRTLERLEYWHAREQVAWRLEAALV-----AADSFMQ-ALDVHTRPGEGKRDVDRSE 323 Query: 298 LL--ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKE---- 351 LL A ++ +A LL EL + A +S G+S+ + Y+ R+ L+ Sbjct: 324 LLLKAAARLDQALDLL--QTELVTEEA-MSEGQSSETEL-----QAYQNRIDELRAALRL 375 Query: 352 INQPGYSYWYECTSRHFTLALTPLSVADKFK-ELMAQKPGS-WIFTSATLSVNDDLHHFT 409 +P W E L + P F +L+ KPG+ +F+SATL + + Sbjct: 376 FRRPESVVWREGDE----LWVVPRRPKPLFGGDLL--KPGTPVVFSSATLEPD-----YQ 424 Query: 410 SR-LGIEQAESLLLPSPFDYSRQALLCVLRNLPQ-TNQPGSARQLAAMLRP---IIEANN 464 +R LG+ + + + PFD RQ+L+ + + N G + A++ ++ A Sbjct: 425 ARVLGLSRFDQSRVGVPFDLGRQSLVYLPPDEGSGMNAAGPDAAVDAVVDEAVRVLHATG 484 Query: 465 GRCFMLCTSHAMMRDLAEQFRAT-MTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWE 523 GR +L S A +R + A + PV+ +G+ +G L++F + +++LV + FWE Sbjct: 485 GRALILVRSLAEVRRWRQALAAHHLPWPVIYEGDGDRGAQLERFRAEVDSVLVG-AGFWE 543 Query: 524 GVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGR 583 GVDVRG+ LS VI+ LPF DPL++ R + G DPF V LP+ +I LKQG+GR Sbjct: 544 GVDVRGEALSCVILPYLPFPE-HDPLIRERRGQAQAAGQDPFRAVDLPEMLIKLKQGMGR 602 Query: 584 LIRDADDRGVLVICDNRLVMRPYGATFLASLPP-APRTRDIARAVRFLA 631 LIR A+DRGV+ + D + + P A R D+A FLA Sbjct: 603 LIRTAEDRGVIALLDRSYRGADWAGAVEEAFPEGARRVTDLAEVKAFLA 651 >UniRef50_Q1YS96 ATP-dependent helicase DinG n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS96_9GAMM Length = 668 Score = 196 bits (497), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 185/673 (27%), Positives = 301/673 (44%), Gaps = 88/673 (13%) Query: 27 MAVAVTQAIEKGQP----LVVEAGTGTGKTYAYLAPAL---RA-KKKVIISTGSKALQDQ 78 M V A+ P VVEAGTGTGKT YL AL RA KK V+++TG+ ALQ+Q Sbjct: 1 MIATVANALSDNDPDKRLAVVEAGTGTGKTVGYLIAALPIARALKKTVVVATGTIALQEQ 60 Query: 79 LYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQ--QALAGGDLPVQILSDVI----- 131 L +DLP + +A + + AL+KGR Y C ++EQ A+ D + + D + Sbjct: 61 LIHKDLPELLEACGWDHSCALVKGRGRYACNLKMEQCLDAIKSKDAGLFLFEDEVAFNPN 120 Query: 132 -----LLRSWSNQ----TVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVV 182 L R S+ T DGD + S +D + W +T C G C C Sbjct: 121 VQTEDLYREMSDALAEGTWDGDRDSWESRIQDVE-WRALTIDRRQCSGRRCRFVNQCAFF 179 Query: 183 KARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADVMIFDEAHQLPDIASQYFG- 239 AR + +++ +V NH L +AD+ + G G ++ PE + IFDE H++ D A ++FG Sbjct: 180 NARNELEESECIVANHDLVMADLAL---GGGAILPPPEDCIYIFDEGHRIGDTAIRHFGA 236 Query: 240 --------------QSLSSRQLLDLAKDITIAY---RTELKDTQ--QLQKCADRLAQSA- 279 Q Q+ KD +A R E T+ +L A + Q A Sbjct: 237 ECRVNNSITWLERLQKQCKGQVPVFEKDTALAEQLPRLEKGATKIIELLNVAYPILQQAL 296 Query: 280 ------QDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSAL-- 331 +D R + LR++ + Q + L LE+ D +LG Sbjct: 297 ESADYPEDGRYRYANGDIGEGLRDIASQLAKQTSAWL--GRLEVLVDTLNDALGDKQYPI 354 Query: 332 ----LDAAFERATLYRTRLKRL--------KEINQPGY--SYWYEC----TSRHFTLALT 373 ++ +++A +++R ++L +EI + W + ++ + Sbjct: 355 PAPDVELFYQQAGSWQSRAEQLLALWDRLQREIKTGDMPLACWLRLDDSGNNVDISVNAS 414 Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYSRQA 432 P+ A+ ++++ + + TSATL GI + A + + FDY + A Sbjct: 415 PIQAAELLRDVLWGSCYASVVTSATLRALGSFQTLQRETGIPDFAHFMTVAGAFDYQQAA 474 Query: 433 LLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRC--FMLCTSHAMMRDLAEQFRATMTL 490 ++ V + + NQ + + ++ E C +L +S M + + + + Sbjct: 475 VIRVPADAVEGNQTDAHTRY--IIDHFAEYEEPHCGTLVLFSSRRQMEQVYDDLSSELQK 532 Query: 491 PVLLQGETSKGQLL----QQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPD 546 +L+QG+ S +++ ++ ++L+ +SF EGVD+ GD V+I KLPF PD Sbjct: 533 NILIQGQLSNREMVRLHKERIDQGRTSVLMGLASFAEGVDLPGDYCRHVVIAKLPFAVPD 592 Query: 547 DPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPY 606 DPL +A E GG+ F ++ LP A + L Q GRL+R D G + I D RL+ + Y Sbjct: 593 DPLHEALSEWIEAGGGNSFFDISLPIASLRLVQACGRLLRTEKDTGTVTILDKRLITKRY 652 Query: 607 GATFLASLPPAPR 619 G L LPP R Sbjct: 653 GTQLLNGLPPFRR 665 >UniRef50_Q2BMS2 Helicase, putative n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMS2_9GAMM Length = 707 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 190/687 (27%), Positives = 303/687 (44%), Gaps = 88/687 (12%) Query: 17 GFKPREPQRQMAVAVTQAI-----------EKGQPL-VVEAGTGTGKTYAYL---APALR 61 G K R Q+ M V + + E G + V EAGTGTGKT AYL P + Sbjct: 22 GLKARYGQKMMIAEVARTLGSINSNHEGVREGGNHICVTEAGTGTGKTMAYLLASVPIAQ 81 Query: 62 AK-KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLER----LEQQ- 115 A+ KKV++ST + ALQ+QL +DLP + L KGR Y C+ LEQQ Sbjct: 82 ARNKKVVVSTATVALQEQLILKDLPQLVTEAGINLTYGLAKGRGRYFCISNAEKVLEQQN 141 Query: 116 -----ALAGGDLPVQILSDVIL-----LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTN 165 AL ++ ++ +VIL L +++ DGD + V D W L TS + Sbjct: 142 ELGQIALYEDEVAQKLDQEVILEVKGLLSQYASGEWDGDRDSLVDTVPDP-IWQLSTSDH 200 Query: 166 DNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADVMI 223 C C + C AR++ D++V NH L LAD+ + G G ++ PE + I Sbjct: 201 VRCTNRRCSNFSSCPFFLARQQLDKWDLIVANHDLVLADLSL---GGGAILSPPEDTIYI 257 Query: 224 FDEAHQLPDIASQYFGQSLSSR--------------QLLDLAKD--ITIAYRTEL----- 262 FDE H L + +F SL + +LL+ A + + I+Y +L Sbjct: 258 FDEGHHLSTKTTGHFAYSLRIKSSIRWLSTVTRTLNKLLNEASEHVVLISYIDKLATPFS 317 Query: 263 ---KDTQQLQKC-----ADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDT 314 + Q++Q D+L+ + +R G L L +R L + Sbjct: 318 DMERSLQEMQTLLNMLLEDKLSGPSDRYRFAQGIIPESLQLSALNLAQAAERVVLKFEQI 377 Query: 315 LELCYDVAKLSLGR--SALLDAAFERATLYRTRLKRLKEI-------NQPG---YSYWYE 362 ++L + L + + F + + +R++ + + +Q G + W + Sbjct: 378 VDLLKEGMDGELADLPREMGEKWFPQIGAFHSRVQSIYGLARSYSASDQTGALPTARWIQ 437 Query: 363 CTSRHFTLAL----TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQA 417 + + L +P+S AD +E + + + TSATL+ + LGI + Sbjct: 438 KVDGNEGIDLACHSSPVSAADNLEEHLWSQCYGAVVTSATLTALGRFDRLYTDLGIPSDS 497 Query: 418 ESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 + SPFD+ A L V P Q + + +L +S M Sbjct: 498 PCAVFNSPFDFQNAAQLRVPAMKTDPGNPDLHNQEISDYLIQLLPTETSALVLFSSWRQM 557 Query: 478 RDLAEQFRATMTL-PVLLQGETSKGQLLQQFVSAGN----ALLVATSSFWEGVDVRGDTL 532 R + + AT+ +L+QG+ +K ++L+Q + +++ +SF EGVD+ G L Sbjct: 558 RYVLDAMPATIVADSILVQGDLAKHEILRQHREKIDQQKASIIFGLASFAEGVDLPGKYL 617 Query: 533 SLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRG 592 + VII KLPF PDDP+ E +G +PF+E +P A + L Q GRL+R +D+G Sbjct: 618 THVIITKLPFGVPDDPVDATYSEWIESQGRNPFEEWVIPMASMRLTQATGRLLRTEEDKG 677 Query: 593 VLVICDNRLVMRPYGATFLASLPPAPR 619 + + D R + R YG LA+LPP R Sbjct: 678 DITLLDRRFITRRYGKQLLAALPPYRR 704 >UniRef50_UPI0001C37E7F helicase c2 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37E7F Length = 633 Score = 191 bits (485), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 172/644 (26%), Positives = 294/644 (45%), Gaps = 75/644 (11%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKKKVIISTGS 72 G + R Q M+ + QAI + L VEA G GK+ AYL P R +K++II+T + Sbjct: 23 GLQRRPGQIAMSQEIAQAIADNKSLAVEAEVGIGKSIAYLVPLVIQYFRERKQMIIATST 82 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 ALQDQL S D+ V + L +V + KG NY+CLER + D Sbjct: 83 IALQDQLES-DILNVLELLGVRADVEIAKGMKNYVCLERFHRFTREHKDYT--------- 132 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 R + + V V ++ + S D C S+C C R++ + D Sbjct: 133 -RQFDRAKYGLQLRQDVYVPDEVWDKICINSFGDKC--SECSFRHKCEYSLMRERIRNKD 189 Query: 193 -VVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLA 251 +V+ N ++ ++ + +ESG G P+ ++ DEAH L + F + S +++ + Sbjct: 190 EIVICNQNMLVSHFIKEESGEGIFKPDFSTLVVDEAHNLENNFRDAFTTAYSQKEISNEV 249 Query: 252 KDITIAYRTELKDTQQLQKCAD----RLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA 307 LK T+ + + Q DF L + Q+ Sbjct: 250 ----------LKATENRKNILSSRIVEIIQMVDDFFKYLKYDIH-------------QQQ 286 Query: 308 FLLLDDTLELCY----DVAKLSLG-RSALLDAAFERATLYRTRLKRLKEINQPGYSYWYE 362 +DD Y +V KL L RSA+L+ R L+ + + W Sbjct: 287 SKSIDDMRTYYYRPIREVRKLVLRIRSAMLEIEM-RTNRRLNCLQMFRNLENKDCLVWL- 344 Query: 363 CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLS------VNDDLHHFTSRLGIEQ 416 T + + + + + L+ + I TSAT++ +++ +F + LG Sbjct: 345 TTEKGVRVNICKKDIRREIGRLLFTESRRTILTSATITSQNSGTLSEKYRYFLNNLGCPN 404 Query: 417 AESLLLP--SPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANN---GRCFMLC 471 + P SP++Y + +++ V LP N+ A ++ I++ N G+ +L Sbjct: 405 NVCVSEPKKSPYNYDKHSIMYVSDKLPIPNKRNRTAYRNAAIKEIVKLLNITEGKALILF 464 Query: 472 TSHAMMRDLAEQFRATMTLP--VLLQGE-TSKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 T+ M+ + ++ + M LP +++Q E T++ + L++F + N++L+ T ++WEG++++ Sbjct: 465 TAKDDMQYVFKKL-SNMGLPYKIMVQDESTTQERRLEKFQNNVNSVLLGTGTYWEGINIK 523 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 G++LS VII KLPF P DP+++ +M P +V +P+ +I LKQGVGRLIR + Sbjct: 524 GESLSQVIIFKLPFPVP-DPIVEYKMRKTEC----PLMDVAVPEMIIKLKQGVGRLIRSS 578 Query: 589 DDRGVLVICDNRLVMR---PYGATFLASLPPAPRTRDIARAVRF 629 +D+G++ I D R+ Y LASLP T DI F Sbjct: 579 EDKGIVSILDPRVSKSQNTAYREDTLASLPEKNTTEDITELEEF 622 >UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF4745 Length = 1746 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 180/661 (27%), Positives = 280/661 (42%), Gaps = 92/661 (13%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGSK 73 +PRE Q++MA AV + G L VEA TGTGK+ AYL PA+ R + V+I+T +K Sbjct: 331 LRPREAQQEMARAVADVFDHGGRLAVEAPTGTGKSLAYLLPAIGRASRPGQPVVIATATK 390 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 LQ QL L ++G +NY+C LE P+ + + + Sbjct: 391 TLQGQLRVEATRLHDDGL-LGAPFRQIQGVANYVCTRELEDALSDRESSPLALAVALRAI 449 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD---CPMYKDCFVVKARKKAMD 190 + T D D++ V D++ N G D C + C + + Sbjct: 450 AASPTGTWD-DVTDDVIRRRDTRYARTRARLRTNAGGCDRTKCVWAQVCPMTQQLNGLDK 508 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADV-MIFDEAHQLPDIASQYFGQSLSSRQLLD 249 A VV +H +A V + G+++ E+ ++FDEAH L D + + + + + +L Sbjct: 509 APGVVSVNHALIASWVKTDHAPGDVLTESRADLVFDEAHGLEDSLTAAWTERVDALELDI 568 Query: 250 LAKDI--------------------TIAYRTELKDTQQLQKCADRLAQSAQDF------- 282 L + T A + + Q++ LAQ+ + + Sbjct: 569 LVNSLSPRSKLMRGIRSRAGTDTSFTEASQAITTSSTQVRSSGAELAQAIETYLHEYAGK 628 Query: 283 ----RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLS------------- 325 L+ G R R L R +L+ +L V LS Sbjct: 629 SDSVVLRTGVVNSRPEFRVLRQAATAVRYWLI-----QLAKAVTALSQSLAGVNGTGSAR 683 Query: 326 ---LGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH-----FTLALTPLSV 377 G S LDAA E L ++E+ G+ + Y + +T P+ V Sbjct: 684 RRLRGYSERLDAAIEL-------LDTMRELPD-GHLWVYRLAAEEDDPAAWTYERIPVHV 735 Query: 378 ADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA--------ESLLLPSPFDYS 429 +F++L+ + S + SATL+V SRLGI A L LPSPFDYS Sbjct: 736 FPEFEQLVVDRTHSTVLCSATLTVQHRFDFIASRLGIGIAADPDGAGFRGLRLPSPFDYS 795 Query: 430 RQALLCVLRNLP---QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR- 485 +Q+L+ + +LP N+ ++AA + + G+ L + M +A R Sbjct: 796 KQSLVILTNHLPVPIPVNEREFCEEMAADQTGFLSLSGGKTLTLFAARTRMEAVAAGVRI 855 Query: 486 -----ATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL 540 A + +L+QG+ + Q+ ++F +L S+WEG D G+TLS + I+K Sbjct: 856 RAAELAQRGVELLVQGDQGRSQIQRRFRDEPGTVLYGLRSYWEGFDAPGETLSYLFIEKP 915 Query: 541 PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR 600 P+ PDDPL+ AR RG DPF + LP + QG GRLIR DRG ++CD R Sbjct: 916 PYPHPDDPLISARQRAIADRGDDPFLDYVLPMTAMQFAQGFGRLIRSETDRGAALVCDRR 975 Query: 601 L 601 L Sbjct: 976 L 976 >UniRef50_Q39QU4 Helicase c2 n=11 Tax=Bacteria RepID=Q39QU4_GEOMG Length = 876 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 108/270 (40%), Positives = 150/270 (55%), Gaps = 14/270 (5%) Query: 360 WYECTSRHFTLAL----TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE 415 W+E +A+ +PL VA K + + + TSATL+V + + R GI Sbjct: 584 WFEVKKGAKGIAVRLCASPLEVAASLKRTVFDAFRTVVVTSATLAVGETFDYLEGRTGIA 643 Query: 416 -----QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFML 470 + LLL SPFDY RQA + + +LP+ G L L + +NG F+L Sbjct: 644 LLDRGRVTELLLASPFDYERQAFVGIPADLPEPTSRGFQEALEVALHRGLAISNGHAFVL 703 Query: 471 CTSHAMMRD----LAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVD 526 TS+ ++ +AE R P + QGE ++ LL +F NA+L T SFWEGVD Sbjct: 704 FTSYDLLSRIHGRMAEALRRRGLTP-MRQGEINRHHLLARFRKEPNAVLFGTDSFWEGVD 762 Query: 527 VRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIR 586 V+G L LV+I +LPF P +P+L+AR + LRGGDPF E +P AVI KQG GRLIR Sbjct: 763 VQGKALELVVITRLPFRVPTEPILEARADHIALRGGDPFMEYTVPQAVIKFKQGFGRLIR 822 Query: 587 DADDRGVLVICDNRLVMRPYGATFLASLPP 616 +DRG ++I D+R++ + YG FL SLPP Sbjct: 823 SREDRGAVLILDSRVLSKNYGRFFLRSLPP 852 Score = 169 bits (428), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 95/257 (36%), Positives = 147/257 (57%), Gaps = 15/257 (5%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----AL 60 FAP G LA +PG++ RE Q +MA AVT+A + V+EAGTGTGK+ AYL P A+ Sbjct: 164 FAPAGVLAANLPGYEHREEQLRMAFAVTEAFNDDRVAVIEAGTGTGKSLAYLVPAVLWAI 223 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL----EQQA 116 R K+++++ST + LQ+QL +D+P + + L+KGRSNYLCL +L + + Sbjct: 224 RNKERIVVSTNTINLQEQLIKKDIPFLQRHAGVQFRAVLVKGRSNYLCLRKLAGVKSEPS 283 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 L D L +I +WS +T +G + +S + W V D C CP+Y Sbjct: 284 LFADDPAAGELEAII---AWSEKTAEG-CRSDLSFIPKPETWEEVACEADQCGRIKCPLY 339 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVK-ESGFGE--LIPEADVMIFDEAHQLPDI 233 CF AR++A ADV+VVNH L +AD+ ++ E+G+ ++P + ++ DE H L D+ Sbjct: 340 ARCFFYGARRQAASADVLVVNHALLMADVALRQETGYRSTAILPPFERLMVDEGHHLEDV 399 Query: 234 ASQYFGQSLSSRQLLDL 250 A+ + +S + +L L Sbjct: 400 ATGHLSSQVSRQGILKL 416 >UniRef50_A6TUM0 Helicase c2 n=3 Tax=Clostridiales RepID=A6TUM0_ALKMQ Length = 657 Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 174/650 (26%), Positives = 306/650 (47%), Gaps = 80/650 (12%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR----AKKKVIISTGS 72 G++ RE Q A + A+ + + EAG GTGKT+AYL A+ + K V+I+ S Sbjct: 37 GYEVREEQIFTAFQLADAVCNKKVHLAEAGLGTGKTFAYLLTAIAYARFSGKPVVIACAS 96 Query: 73 KALQDQLYS--RDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 ALQ+QL D+ T+S L + + K Y+C R+++ + + +++ Sbjct: 97 TALQEQLAGPKGDIQTLSDILGLEIDARMAKDPRQYICDARVDESRGLFTEKSNAMSNEI 156 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD-CPMYKDCFVVKARKKAM 189 W +T G+ S V + + W + D + D C C +VKAR+ Sbjct: 157 ---NQWLAKTNRGERSEMPLVPD--RVWKQIGW--DESMSCDMCSSRGFCKLVKAREHYR 209 Query: 190 DA-DVVVVNHHLFLADMVVKES----GFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 A D+++ +H +F D+ ++ G ++P +IFDE H++ A+ G+ + Sbjct: 210 PARDLIIADHEVFFDDLWTRDEQIDGGKSPILPSYSAVIFDEGHKVMLPAAMRAGKQIIK 269 Query: 245 RQLLDL---------AKDITIAYRTELKDTQ-----QLQKC------ADRLAQSAQDFRL 284 + ++ A+D I+ +L+ T +L +C +DRLA D Sbjct: 270 EDIDNIILSLEEIQGARDSLISIAVDLEQTSSDFFIKLNRCVIADEPSDRLALRVDDKLF 329 Query: 285 QLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRT 344 + + Y+ +L LL Q+++ EL + SL + + ER+ + Sbjct: 330 KAADTFYK-DLDRLLFEIQVEQ---------ELYTESLPASLLHT--YETQIERSMMALD 377 Query: 345 RLKRLKE------INQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSAT 398 R R K ++Q S+W + P ++ + QK +FTSAT Sbjct: 378 RFCRNKSRDVITWVDQMDGSFW-----------VVPRELSKMLDIHLFQKGLPVVFTSAT 426 Query: 399 LSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAM--- 455 LS D +FT LG+++ + SPFD Q V+ +LPQ + ++ Sbjct: 427 LSNEGDFSYFTRTLGLKKTSCSTVESPFDIEEQ----VVVHLPQPSSNSHEDIGFSLGIE 482 Query: 456 -LRPIIEANNGRCFMLCTSHAMMRDLAEQFR-ATMTLPVLLQGETSKGQLLQQFVSAGNA 513 L +++ N G +L +S +R + + F+ + VL + + +G L+++F ++ Sbjct: 483 GLVSLLKLNGGGALVLTSSLDEVRKIRKGFKDYQLPFEVLWEDKGERGYLVRKFREEVSS 542 Query: 514 LLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDA 573 +L+ TS FWEG+D+ G+ LSLV++ +LPF S D PL++ + E+ + G DP V P+ Sbjct: 543 VLIGTS-FWEGIDIPGEALSLVVVWQLPFPSLD-PLIEVQREEAKKEGLDPKVTVDYPEM 600 Query: 574 VITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDI 623 + LKQG GRLIR DDRG +VI ++ ++ P+ + +LPP + R + Sbjct: 601 GLKLKQGCGRLIRTKDDRGAIVIMES-IIGEPWEEVVMGALPPGAKIRAV 649 >UniRef50_Q6MEU9 Putative ATP-dependent DNA helicase dinG n=2 Tax=Parachlamydiaceae RepID=Q6MEU9_PARUW Length = 753 Score = 182 bits (463), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 102/251 (40%), Positives = 139/251 (55%), Gaps = 10/251 (3%) Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-------EQAESLLLPSPFD 427 L ++ E + K + I SATL+ N RLG+ Q E + SPFD Sbjct: 470 LDISKSLAEFVFSKFPTVILCSATLTSNQQFQFIRKRLGLTDKHLPYRQIEEYIYDSPFD 529 Query: 428 YSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT 487 Y +QALL V ++P + P + I+A+ G+ F+L TS++M++ AE+ A Sbjct: 530 YHKQALLAVPTDMPPPSHPDFNWIAFENIWKAIQASRGQAFVLFTSYSMLQQCAEKLSAR 589 Query: 488 M---TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTS 544 M + QGE ++ LL +F + A+L T SFWEGVDV GD L VII KLPF Sbjct: 590 MHEHAYVLFKQGEEARQTLLHKFKTTDRAILFGTDSFWEGVDVAGDALRCVIIVKLPFRV 649 Query: 545 PDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMR 604 P +PL++AR E +GG+PF E +P AV+ KQG GRLIR+ DRG +V D RLV + Sbjct: 650 PTEPLIQARTEAIIEKGGEPFFEYSVPQAVVKFKQGFGRLIRNQWDRGCIVCLDTRLVTK 709 Query: 605 PYGATFLASLP 615 YG FL SLP Sbjct: 710 GYGKQFLNSLP 720 Score = 176 bits (446), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 92/250 (36%), Positives = 143/250 (57%), Gaps = 9/250 (3%) Query: 7 PDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RA 62 PDG LA ++ GF+ R Q+QM + +A ++EAGTG GK+ AYL PAL R Sbjct: 22 PDGLLANSLKGFEFRPQQQQMMTNIIEAYNNDSIALIEAGTGIGKSLAYLIPALIWAARF 81 Query: 63 KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL 122 ++ +IST + LQ+QL S+D+P + AL L+KG NYLC+ +LE + + Sbjct: 82 NERTVISTNTITLQEQLLSKDIPNLLDALDLNLKAVLVKGMHNYLCIRKLEDVQMEMSIV 141 Query: 123 PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVV 182 + ++ + +W QTVDG S+ +S A W V + N+ C +CP Y+ CF Sbjct: 142 SSEEAQEIEKIEAWRQQTVDGSRSS-LSFAPTHSVWEKVGAENEACSHHECPHYQQCFFF 200 Query: 183 KARKKAMDADVVVVNHHLFLADMVVK--ESGFGE--LIPEADVMIFDEAHQLPDIASQYF 238 KAR++A DA +++VNHHL AD++ + + + E ++P +I DEAH + DIA++YF Sbjct: 201 KARRQAQDAHILIVNHHLLFADLMRRADTANYSETSILPTYRRIILDEAHHVEDIATEYF 260 Query: 239 GQSLSSRQLL 248 L +L+ Sbjct: 261 ASHLHRIELM 270 >UniRef50_C6JKU1 ATP-dependent helicase n=2 Tax=Fusobacterium RepID=C6JKU1_FUSVA Length = 832 Score = 178 bits (452), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 90/273 (32%), Positives = 154/273 (56%), Gaps = 10/273 (3%) Query: 357 YSYWYECTSR--HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 + YW E SR + L TPL + ++ ++ + IFTSAT+++ D +F +G+ Sbjct: 540 FIYWIEVNSRKSNSKLVATPLKIDNELQKNLYINLKQIIFTSATIAIGSDFSYFKESIGL 599 Query: 415 EQAE-SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTS 473 E+ ++ SPFDY +Q + + ++P + +++ L+ ++ + G+ F+L TS Sbjct: 600 EEDTLDKVIHSPFDYDKQMKVYIPDDIPNPSDRNFVDEISEFLKALLIKSKGKTFVLFTS 659 Query: 474 HAMMRDLAEQFRATMT---LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGD 530 ++ + + R + + + + G + L+ +++ N +L T SFWEGVD++G Sbjct: 660 YSALNYVYYLLRDDLEANGIELYIHGMAPRTHLVNMYINGRNPVLFGTDSFWEGVDIKGK 719 Query: 531 TLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADD 590 LS VII KLPF P DP+ +A +E+ +G + F E Q+P+AVI KQG+GRLIR D Sbjct: 720 QLSSVIIVKLPFKVPSDPVTEAIIENITAQGKNSFIEYQIPEAVIKFKQGIGRLIRSKTD 779 Query: 591 RGVLVICDNRLVMRPYGATFLASLPPAPRTRDI 623 G + I DNR++ + YG F+ S+P TR+I Sbjct: 780 HGTVTILDNRVINKRYGKYFMESIP----TRNI 808 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 97/299 (32%), Positives = 158/299 (52%), Gaps = 22/299 (7%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 +T F G L++ GF+ R+ Q MA + + + ++VEAGTGTGKT AYL P Sbjct: 127 ITPYFEKTGLLSQTFKGFEYRDEQLHMAKHIENGLNDEKKVIVEAGTGTGKTLAYLIPSV 186 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 A++ KK+V+IST + LQ+QL ++D+P K ++ L+KGR NYLC + A Sbjct: 187 EWAIKNKKRVVISTNTINLQEQLLNKDIPIAKKVVQGDFRYILVKGRGNYLCNRKYFNLA 246 Query: 117 LAGGDLPVQILSD--------VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC 168 L G ++ + S+ +I+ W +T GD S + D+ W L S D C Sbjct: 247 L-GENVNFEEFSNSQKTQFKEIII---WGKKTEKGDKSE-LPFEVDNSVWELFQSETDIC 301 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVV-KESGFG---ELIPEADVMIF 224 G+ CP +CF +K+R++ +AD+++ NHH++ +D+ + KE GF ++PE +++F Sbjct: 302 AGAKCPYKGECFFLKSREEKKNADILITNHHMYFSDLAIRKEIGFNTEYSILPEYGLVVF 361 Query: 225 DEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFR 283 DEAH + +A YF S + I A + K+T L + + ++ D R Sbjct: 362 DEAHNIEKVARDYFSYEASKYSFTKIMNQI-FATEGKKKNTGSLDILLNYIKNTSLDSR 419 >UniRef50_Q1K3T5 Helicase c2 n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3T5_DESAC Length = 850 Score = 176 bits (445), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 99/263 (37%), Positives = 148/263 (56%), Gaps = 8/263 (3%) Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-----EQAESLLLPSPFDY 428 P+SVA K+ + + S +FTSATL+VN H+F R G+ ++ + L L SPFD+ Sbjct: 572 PISVAATLKQAVYDRFRSIVFTSATLTVNRQFHYFHQRTGLNLCPEKRRQQLCLDSPFDF 631 Query: 429 SRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 + QA + + ++ A LA + + A+ GR F+L T++++++ L + + Sbjct: 632 ASQARVVIPTDIVPPTHQNYAAMLAEQVEQAVIASEGRSFVLFTAYSLLKKLYNELEPPL 691 Query: 489 T---LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSP 545 L QG++++ LL++F +L T SFWEGVDV G L VII +LPF P Sbjct: 692 HARGFNCLYQGQSARHLLLKKFRLDQKHILFGTDSFWEGVDVPGQALQQVIITRLPFRVP 751 Query: 546 DDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRP 605 +P+ AR E G DPF +P AV+ LKQG GRLIR DRGV++I D R++ + Sbjct: 752 TEPIQIARSEHLEQMGVDPFMHYTVPQAVLRLKQGFGRLIRHRQDRGVVLILDQRVISKG 811 Query: 606 YGATFLASLPPAPRTRDIARAVR 628 YG FL SLPPA R A+ ++ Sbjct: 812 YGRIFLNSLPPAQRLTGPAQTIQ 834 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 87/247 (35%), Positives = 129/247 (52%), Gaps = 9/247 (3%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----L 60 A G LA + ++ R Q +MA+AV +A + +EAGTGTGK+ AYL PA L Sbjct: 134 LAAHGPLASHLGSYEERPEQLRMALAVAEAFNQNGLATIEAGTGTGKSLAYLIPAIMWAL 193 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 ++ V IST + LQ+QL S+DLP + + + + L+KGR+NYLCL RL+ Sbjct: 194 DNEQPVAISTNTINLQEQLISKDLPLLKEVMDREFHSVLVKGRNNYLCLRRLDSAHREPD 253 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + ++ L W+ T G ++ S W V D C + CP Y CF Sbjct: 254 LFQNEQSGELAQLHEWAAATNVGSRDE-LTFIPSSAVWMEVCCEMDQCPRTRCPHYSRCF 312 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKES----GFGELIPEADVMIFDEAHQLPDIASQ 236 KAR++A AD++VVNH L L+D+ ++ ++P ++FDEAH L D A++ Sbjct: 313 FHKARRRAAHADLLVVNHALLLSDLSLRAETENYSAAAVLPPYSRIVFDEAHHLEDAATR 372 Query: 237 YFGQSLS 243 F LS Sbjct: 373 NFSIRLS 379 >UniRef50_Q2LUZ3 ATP-dependent helicase, dinG family n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUZ3_SYNAS Length = 917 Score = 171 bits (433), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 185/675 (27%), Positives = 293/675 (43%), Gaps = 109/675 (16%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA-----KKK 65 LA A GFK R+ Q A V +A+ G L +EAGTGTGKT YL P + + + Sbjct: 258 LAGAAQGFKFRKTQLDYAFHVAEALNDGAVLTLEAGTGTGKTQGYLIPVMEYLHRNPEAR 317 Query: 66 VIISTGSKALQDQLYSRDLP-TVSKALKYTG-NVALLKGRSNYLCLERLE---QQALAGG 120 ++IST +K+LQDQ++ +++ TV+ Y+ ++A+LKG+SNYLC E+L ++ L G Sbjct: 318 IMISTYTKSLQDQIFQQEINRTVALERGYSKISIAVLKGKSNYLCAEKLNSAFEEDLKGA 377 Query: 121 DL--PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD--CPMY 176 L + ++ + L R +TV I ++ + S C G+ CP Sbjct: 378 SLLAWLYFVNLIFLYRQVDGETVGEKIGRYLNDGLYLRQLQDEISAKTGCAGNHTLCP-- 435 Query: 177 KDCFVVKARKKAMDADVVVVNHH-LFLADMVVKESGFGELIPEADVMIFDEAHQLPDIAS 235 A +A A +V+ NHH L L D + SG I DEA+ Sbjct: 436 ----AQVALAEARSARLVITNHHKLALIDHDEELSGLFR------NCIVDEANHFEQAVR 485 Query: 236 QYFGQSLSSRQLLDLAKDI-TIAYRTELKDT-------QQLQKCADRLAQSAQDF--RLQ 285 F S+ SR++ D+ + ++ R K + QQ + + Q+ +F LQ Sbjct: 486 NAFSLSVHSREITDIIAYLESVLQRVSRKVSGEVEMMLQQCHETINEFHQTVHEFGSMLQ 545 Query: 286 LGEPGY-RGNLREL------LANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFER 338 P + +G + EL + I++ L D L + G S L D R Sbjct: 546 TIHPYFAKGEILELPVCHGAYPDGDIEKMLRLFADLLR------GIGKGLSFLKDPDASR 599 Query: 339 A--------TLYRTRLKRL-----------KEINQPGYSYWYECTSRHFTLALTPLSVAD 379 R + RL K I + +H+ + ++ + V+ Sbjct: 600 VLKILPRSQERVRNAIARLYTEADNFQTMEKTIRTENTVAACQLFFKHWVITVSAVDVSS 659 Query: 380 KFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES-------------------- 419 K + K I+TSATL + + F +G++ A Sbjct: 660 LIKAHVYNKRDCVIYTSATLRHRNRFNDFCRIVGMDDATGCDSISPAGKEDRTFFTDQDG 719 Query: 420 -----LLLPSPFDYSRQALLCVL----RNLPQTNQPGSARQLAAMLRPIIEANNGRCFML 470 + +PSP YS +++ L N N+ + + +L +I N GR +L Sbjct: 720 REFRFVAIPSP--YSLESMKVFLPDGAVNGGYENKQAWLKAVVDLLPELIRKNRGRTLVL 777 Query: 471 CTSHAMMRDLAEQFRATMT---LPVLLQ--GETSKGQLLQQFVSAGNALLVATSSFWEGV 525 +S++ + +A Q + P+L+Q G + G L+ +F S ++L +FW GV Sbjct: 778 FSSYSDLEAVALQTGDEIIADGYPLLIQQMGRPT-GNLIDEFRSIRESVLFGVETFWYGV 836 Query: 526 DVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLI 585 D RGDTL+ VII ++PF P DPL AR + F +A+I LKQG+GRLI Sbjct: 837 DFRGDTLTQVIITRIPFPYPFDPLQTARKGSL---SKEEFWSRYYYEAIIKLKQGMGRLI 893 Query: 586 RDADDRGVLVICDNR 600 R D+G LV D+R Sbjct: 894 RSETDKGRLVFLDSR 908 >UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class) RepID=B9KXZ3_THERP Length = 982 Score = 171 bits (432), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 98/291 (33%), Positives = 157/291 (53%), Gaps = 10/291 (3%) Query: 332 LDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALT--PLSVADKFKELMAQKP 389 LD RA RL+ + + YW ++ +++L PL VA +E++ + Sbjct: 653 LDVLERRARELHGRLQEILFSPRVERVYWLTWRAQPLSVSLNMAPLDVAPLLQEMLFSRV 712 Query: 390 GSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSA 449 + + TSATL+V+ + +LG+ A+ L++ SPFDY+ LLC+ ++ + +PG Sbjct: 713 DTLVLTSATLTVDRSFDYIRQQLGLADADELVVESPFDYASSTLLCLAEDMAEPGEPGYQ 772 Query: 450 RQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP-VLLQGETSKG---QLLQ 505 RQ+ L ++ GR +L TSH+ ++ + + +L+ G+ G QL++ Sbjct: 773 RQVNEALLALLRVTRGRALVLFTSHSALQAAYRAIKRPLEQEGILVLGQRLDGSPRQLVE 832 Query: 506 QFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPF 565 + + +++ T++ WEGVDV G+ LS+++I KLPF P DP+ AR E DPF Sbjct: 833 RLKARPATVVLGTNAVWEGVDVPGEALSVLVIAKLPFAVPSDPVFAARCESY----SDPF 888 Query: 566 DEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPP 616 E +P AV+ KQG GRLIR D GV V+ D R+ R YG F+ SLPP Sbjct: 889 QEYAVPQAVLRFKQGFGRLIRSTRDYGVCVVLDRRVTTRRYGQLFVQSLPP 939 Score = 157 bits (398), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 96/273 (35%), Positives = 149/273 (54%), Gaps = 33/273 (12%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK- 63 + P+G A+++PG++ R Q +MA AVT + +G L+VEAGTGTGK+ AYL PA+ Sbjct: 255 YGPEGPFARSLPGYEFRAGQVRMAQAVTNVLNQGGQLLVEAGTGTGKSLAYLLPAVLHAV 314 Query: 64 ---KKVIISTGSKALQDQLYSRDLPTVSKALKYTGN------------VALLKGRSNYLC 108 + V++ST + ALQDQL+++DLP + +AL+ +LKGRSNYLC Sbjct: 315 ARGETVVVSTDTLALQDQLFAKDLPLLRRALEAAAEHDPRLADAARFRATVLKGRSNYLC 374 Query: 109 LER--LEQQALAGGDLPVQILSDVIL---LRSWSNQTVDGDISTCVSVAEDSQAWPLVTS 163 L R L Q+ P ++ +L + +W QT GD + E+ AW V Sbjct: 375 LRRWFLRQRE------PFTSRAEALLAAKITAWLAQTETGDRAELHLSNEEQLAWAQVAE 428 Query: 164 TNDNCLGSDCPMYK--DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADV 221 + CL S C ++ CF+ +AR A A +V+VNH L L+D++ + ++P Sbjct: 429 SEGACLPSRCLFHRRNQCFLYRARATAEGAHIVIVNHALLLSDLLAE----SRVLPSYRH 484 Query: 222 MIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI 254 +I DEAH L D A+Q FG ++ + +L + + Sbjct: 485 LIIDEAHHLVDEATQQFGFQIAHEDMRELVRRV 517 >UniRef50_A6LV05 Exonuclease, RNase T and DNA polymerase III n=6 Tax=Clostridium RepID=A6LV05_CLOB8 Length = 976 Score = 170 bits (430), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 165/663 (24%), Positives = 292/663 (44%), Gaps = 121/663 (18%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA-----LRAKKK------ 65 G++ R+ Q++ A + + EKG+ + +EA TG+GKT+AY+ A L +K Sbjct: 258 GYQYRKDQKEFAKKIRENFEKGERIFIEAPTGSGKTFAYVIIAAIETYLNKQKNRKDDAS 317 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTG--NVALLKGRSNYLCLERL----EQQALAG 119 IIST +K LQ+QL RD+PT+ K L+ N +KG+ NYLC+ER+ E Q Sbjct: 318 FIISTNTKELQNQLIERDIPTILKKLRLDDKLNYGAMKGKGNYLCIERINRCEEFQMDEK 377 Query: 120 GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND-NCLGSDCPMYK- 177 G+L + + LR GDI + + + L + NC C + K Sbjct: 378 GNLAL------LFLRRLCESGNYGDIENINYLVQ--KHLELDKYIREVNCDSEQCKLDKC 429 Query: 178 --DCFVVKARKKAMDADVVVVNHHLF----------LADMVVKESG---------FGELI 216 CF+ K + + ++ V+NH L + +++ E F E Sbjct: 430 TRACFLRKRYNELPEENITVINHSLLACWPYTEKKKINHIIIDEGHNLMEKCYDFFAEEF 489 Query: 217 PEADVM----IFDEAHQLPDI--------ASQYFGQSLSSRQLLDLAKDITIAYRTELKD 264 A+ + + ++ H P I AS + +++ +++ LA DI + L D Sbjct: 490 SSAEFIQLLDLIEKGH--PSIIAMLLTLNASFGYRETIEKDKIVYLANDIIVNINILLND 547 Query: 265 TQQLQKCADRLAQSAQDFRLQLGEPGYRGNLREL---------LANPQIQRAFLLLDDTL 315 + L RL +F + P R +L+ + + I + +L+D + Sbjct: 548 FRSL-----RLISGEYNFTTEFFIP--REDLQGITNAIGSEISVLKESIYPLYKMLNDYI 600 Query: 316 -------ELCYDVAKLSLG------RSA--LLDAAFERATLYRTRLKRLKEINQPGYSYW 360 E+ D+ +L +SA +LD E + Y L+ Sbjct: 601 YNITLDDEIDGDIDHKNLSDYIAKLKSAFDVLDKFLESSVFYAKILE------------- 647 Query: 361 YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL 420 + + F L PL+V + E M + S F SATL + + + LG E+A+ Sbjct: 648 VDSEYKSFILKNVPLNVGEMVNEHMLKDVKSTTFLSATLRIENSFNKIKKHLGQEKAKEF 707 Query: 421 LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL 480 ++P FD ++ + L+++ + ++P + ++ + NG +L ++A + Sbjct: 708 IIPPTFDLKKRTKIFALKDVGRYDEPSYIKNVSKFIYNTALKINGHILVLFNNNARRTAV 767 Query: 481 AEQFRATMTLPVLLQGETSKGQLLQQFVSAGN-----ALLVATSSFWEGVDVRGDTLSLV 535 +E+ L +L +G + + ++ V A N +++ + F+EG+DV GD LS V Sbjct: 768 SEE------LELLTRGTKIEVHMSKKSVRALNDKNRQVIILGSKGFFEGIDVPGDALSCV 821 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 ++DK+P SP+ P+L+A + + +G + +V P I KQ GRLIR D G + Sbjct: 822 MLDKIPNYSPEYPILRA-ITTYQKKG---YQDVNYPQVCIKAKQIYGRLIRSTFDYGYFI 877 Query: 596 ICD 598 I D Sbjct: 878 ILD 880 >UniRef50_A6NXQ7 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A6NXQ7_9BACE Length = 684 Score = 168 bits (426), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 185/673 (27%), Positives = 298/673 (44%), Gaps = 86/673 (12%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 G + RE Q+ M+ + A+ Q +EAG G GK++ YL P L R K VII+T + Sbjct: 44 GLEMREGQQDMSFEIVDALINDQHFAIEAGVGIGKSFGYLVPVLLYSKRMNKPVIIATST 103 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 ALQ+QL+ RD+ TV L +V L KG+++YLC +R ++ P L + I Sbjct: 104 IALQEQLW-RDVHTVMPLLGLNRDVILAKGQTHYLCNKRADEYMCDPKADPPDALKEGIK 162 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 + + V + Q + + NC GS C K C K R D Sbjct: 163 QGYEERKVFPEVLPQGVWDKVNVQRFSM-----KNC-GS-CE--KKCKYYKVRAALKFTD 213 Query: 193 VVVVNHHLFLAD--MVVKESGFGELIPEADVMIFDEAHQLPD----IASQYFGQSL---- 242 VV+ + FL M ++ G + AD+++ DEAH L D ++ FGQ + Sbjct: 214 GVVLCNQDFLTQHLMKLRRGQDGLINAAADLLVVDEAHNLDDKVRSATTERFGQGMLFGM 273 Query: 243 ---------SSRQL-----LDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE 288 SS Q A+ IA+ LK Q+QK ++ ++ QD R + Sbjct: 274 IKSAFYELRSSDQSSVSGEKREAESAIIAFYNCLK--AQVQK---QINEAEQDMRY--AD 326 Query: 289 PGY---RGNLRELLANPQIQRAFLLLDDTLELCYDV---AKLSLGRSALLDAAFERATLY 342 + G+ ELL ++ A L ++++ + S S LDA E + Sbjct: 327 RFFFDNNGSAIELLT--EMNAAIHNLSSSIQIYSSMDFRNNRSFAASDDLDAVSESLSEL 384 Query: 343 RTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATL--- 399 R+ + W E + L P + + L I TSATL Sbjct: 385 LDRIDDM--------LIWIEQHGSNTELVYCPKNTKEIVSRLYFNGDERTILTSATLTNA 436 Query: 400 ---SVNDDLHHFTSRLGIEQAESLLL----PSPFDYSRQALLCVLRNLPQTNQPGSA--R 450 S+ + +F S G + L PSP+ Y A++ +LP + A Sbjct: 437 TSGSLEEQYSYFISNTGFPAGDRGCLSEPKPSPYPYDEHAMIYYCDDLPHPTREHDAFIE 496 Query: 451 QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP---VLLQGETSKGQLLQQF 507 + L I+ +NG+ +L T+ M ++ + LP ++ Q +S+ ++L +F Sbjct: 497 KGVERLLEILSISNGKALVLFTAKTDMEEVY-SILSEKNLPYKILMQQPGSSQDKVLNEF 555 Query: 508 VSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDE 567 N++L+ T ++WEG+ + G +LS VII +LPF P DP+++ + C + D + Sbjct: 556 KEDTNSVLLGTGAYWEGISIEGKSLSNVIIFRLPFPVP-DPIIEYK---CSV-AKDALMD 610 Query: 568 VQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRP---YGATFLASLPPAPRTRDIA 624 V++P+ +I LKQG+GRLIR+ D G++ I D RL P Y SLP RT + Sbjct: 611 VRVPEMIIKLKQGIGRLIRNFTDTGIVCIIDRRLRDEPSERYHDITWDSLPIKNRTSSLG 670 Query: 625 RAVRFL-AIPSSR 636 +F +PS++ Sbjct: 671 ELRKFYEGLPSAK 683 >UniRef50_C6PPR9 Exonuclease RNase T and DNA polymerase III n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PPR9_9CLOT Length = 998 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 164/642 (25%), Positives = 292/642 (45%), Gaps = 84/642 (13%) Query: 21 REPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGSKALQ 76 R QR + + + +EKG+ ++EA TG GK+ AYL PA ++KVIIST +K LQ Sbjct: 240 RPQQRDASKFIREGLEKGKITIMEAPTGLGKSMAYLLPAAIYTHLKQQKVIISTNTKGLQ 299 Query: 77 DQLYSRDLPTVSKALKYTGNVA--LLKGRSNYLCLERLEQQALAGGDL--PVQI--LSDV 130 +QL +D+P + +AL +V+ L+KG+SNYLC +R GD+ PV + L Sbjct: 300 NQLVDKDIPNLLEALNLKRDVSYTLIKGKSNYLCFDRF-------GDIEYPVDMKTLVGY 352 Query: 131 ILLRSWSNQTVDGDISTCV-SVAEDSQAWPLVTSTNDNCLGSDCPM----YKD-CFVVKA 184 + L+ + G+I ++ E L+ N C C + YKD C+ Sbjct: 353 VYLKRLMMEKGIGEIEEISPAIMEKFNLGFLINQCN--CDSELCDVGACRYKDRCYYAAK 410 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 + +A ++VVNH L L + + ++P ++++ DEAH L A F +L S Sbjct: 411 VEALKEAQLIVVNHSLLL------KWPYKSIVPLENIVV-DEAHNLTQEAYDAFENALVS 463 Query: 245 RQLLDLAKDIT--------IAY--RTELKDTQQL-------QKCADRLAQSAQDFRLQLG 287 + K+I + Y R KDT L ++C ++A F + Sbjct: 464 YEFEKYLKEIYNSPEKSGYLYYLSRRAKKDTLPLSEVESCIEQCIRQMANIKASFENYIT 523 Query: 288 EPGYRG--NLRELLANPQIQRAFLL----------------LDDTLELCYDVAKLSL-GR 328 + G N+++ L + +F++ L+ + + D++ L R Sbjct: 524 QSGISKDYNIKDHLNINNAKMSFIIRYLEYLKEDLSSLNISLEKAVSVLKDISNLQKDKR 583 Query: 329 SALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTS--RHFTLALTPLSVADKFKELMA 386 +L E Y L+ + ++ GY +++E + + ++ PL V+ F E + Sbjct: 584 LKILMEKVEGINSYSRLLEAVINQSEEGYCFYFEVDKFFKWWKISSIPLDVSGAFYEKVL 643 Query: 387 QKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL---LLPSP-----FDYSRQALLCVLR 438 S +F SATLS + + + LGI A+S ++ P FDY ++++ + Sbjct: 644 SSVKSCLFISATLSTDSGYNSLRNTLGINIAKSQNKEIVEVPPIKPVFDYKGKSVIYAME 703 Query: 439 NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGET 498 N+ + + ++ + ++ G +L TS + E+ AT +L L Sbjct: 704 NIDPNDIGAFSEEMKKFVIKLLHNVEGNIIILFTSRKRLDAFKEE--ATESLRTLGIKVV 761 Query: 499 SKGQLLQQFVSAGN-ALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDC 557 + +++ S +L+ + ++EG+D+ GD ++ VI+DK+P + +P K+ +E+ Sbjct: 762 YGKKDIEKLKSRDERYILLGSKGYFEGIDIPGDAMTTVILDKVPNINSKEPFYKSLIENQ 821 Query: 558 RLRGGD---PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 RG + + +V P I LKQ GR+IR D G L I Sbjct: 822 VERGKNYWQAYAKVNFPIVSIDLKQIYGRIIRTEYDYGDLFI 863 >UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67NP5_SYMTH Length = 958 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 101/275 (36%), Positives = 144/275 (52%), Gaps = 15/275 (5%) Query: 356 GYSYWYECTSR----HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSR 411 G W E R L P++V D + + + S I TSATL+V + H R Sbjct: 658 GEVTWIESAQRGDRLRVALRAAPINVGDILRADLFGRMRSVIMTSATLTVGESFAHLKER 717 Query: 412 LGI-----EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGR 466 LG+ ++ +L SPF Y QALL V +LP + + LR + GR Sbjct: 718 LGLSRLPPDRLREGVLSSPFAYREQALLLVPEDLPNPKEGDFTQAAVDFLRRFLIQAGGR 777 Query: 467 CFMLCTSHAMMRDLAEQFR----ATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFW 522 +L TSH +R + + + A L + + S+ +L+ +F + +L ++SFW Sbjct: 778 TLVLFTSHRQLRQVYQALKDDLEAEGLLLLGQGLDGSRSRLVAEFRAGERTVLFGSASFW 837 Query: 523 EGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVG 582 EGVD+ G+ LS V++ +LPF PDDP+++AR+ED RG F + LP AVI KQG G Sbjct: 838 EGVDIPGEGLSAVVMVRLPFNPPDDPVMEARIEDLERRGLSSFAHLSLPQAVIRFKQGFG 897 Query: 583 RLIRDADDRGVLVICDNRLVMRP--YGATFLASLP 615 RLIR DRGV+++ DNRL R YG FL SLP Sbjct: 898 RLIRTRGDRGVVIVLDNRLSPRGSRYGLQFLRSLP 932 Score = 145 bits (367), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 98/263 (37%), Positives = 146/263 (55%), Gaps = 19/263 (7%) Query: 9 GQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---RAK-K 64 G +++AI ++ R Q ++A AVT++ G L++EAGTGTGK+ AYL PA RA + Sbjct: 250 GAISEAIAHYEHRPQQLELAEAVTRSFNDGAHLLMEAGTGTGKSLAYLVPAFAWARANGE 309 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTG----NVALLKGRSNYLCLERLEQQALAGG 120 KV IST + LQ+QL+ +D+P + AL T AL+KGRSNY+CL + E+ A+ G Sbjct: 310 KVAISTHTITLQEQLWEKDIPFLQSALAGTPLEGVEAALVKGRSNYICLRKWEEAAV-GA 368 Query: 121 DLPVQILSDVILLR--SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 D L+R +W +T GD S E+ + W V S + CLG C ++ Sbjct: 369 DFLTSPEERRFLIRLAAWLAETETGDRSELNLSGEEERFWRTVQSETETCLGPKCKWFRS 428 Query: 179 -CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 CF +AR++A DA V+V+NH L AD+ +++P +I DEAH L +A+Q Sbjct: 429 HCFAFRARRRARDAQVLVLNHALLFADIAAGN----QVLPPFRHLIIDEAHHLEAVATQN 484 Query: 238 FGQSLSSRQLLDLAKDITIAYRT 260 G +L S D+ + + YR Sbjct: 485 LGVNLES---WDITGALLLLYRA 504 >UniRef50_A1WP29 Helicase c2 n=2 Tax=cellular organisms RepID=A1WP29_VEREI Length = 664 Score = 162 bits (411), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 182/648 (28%), Positives = 279/648 (43%), Gaps = 60/648 (9%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPL-VVEAGTGTGKTYAYL----APALRAKKK 65 L +PGF R Q+ M ++ T + Q L V+EA TG GK+ YL A A+ K Sbjct: 27 LTSVMPGFVARAQQKTM-ISRTLGLMTRQALGVIEAPTGIGKSMGYLIAGIASAVTEDKV 85 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTG----NVALLKGRSNYLCLERLE------QQ 115 +++ST + +LQDQL S+DLP +A G +V + KGR + C ++ Q Sbjct: 86 LVVSTATASLQDQLASKDLPLALRAFALAGVCGIDVVVAKGRERHACPMKMHAFAGGTQD 145 Query: 116 ALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 A GD + V L R V D+ V +AW + +T +C G CP Sbjct: 146 LFAAGDDHTALTQAVDLWRQGQWAGVRDDLP----VRLHQRAWMRIANTAASCPGQKCPE 201 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMV-VKESGFGELIPEADVMIFDEAHQLPDIA 234 + C + A V++ NH L+ + V S F + + +FDEAH L D Sbjct: 202 FDLCPYYATQAALKTARVIITNHDYLLSTLSNVPHSVFSD--GHKCLFVFDEAHHLSDKL 259 Query: 235 SQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADR---LAQSAQDFRLQLGEPG- 290 F + L L ++ A L A+R + ++ +D L + G Sbjct: 260 LNAFARRLD---LAAFPSEVIEAIAQLCPGMVGLDFAAERVRGIWRACEDAALTMLGDGS 316 Query: 291 -YRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFER---ATLYRTRL 346 +R L E+ PQ +R LLLD +L A L + + +A F A L +R+ Sbjct: 317 QHRFTLNEV--PPQFRR--LLLDLKAQLSGMRATLKEVKES--NARFRNKAVAMLADSRI 370 Query: 347 KRLKEINQPG------------YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIF 394 +L Q + W L +P A K ++ + + + Sbjct: 371 GQLSGDVQEAIDCIEEFTGDDLVARWLARGRNSIDLNCSPFDGARKARKHLWPVVKTGLL 430 Query: 395 TSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLA 453 TSATL+ LG+ + +L L SPFDY R A L V R + + P +R +A Sbjct: 431 TSATLTTLGSFEPMRIALGLPAETSTLKLDSPFDYGR-ARLIVPRLCVEASDPAHSRMVA 489 Query: 454 AMLR--PIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQF---V 508 A L+ + A + + TS +M D +LLQG+ +L++ + Sbjct: 490 AFLKDHALGAAKHRGVLVYFTSKKLMLDCMAAIPTAQRGCILLQGQWQPWAMLEEHKRRI 549 Query: 509 SAG-NALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDE 567 AG +++ S EGVD+ G+ + VI+ +LPF PDDP+L E R +G DPF Sbjct: 550 DAGVRSIIFGLDSIGEGVDLPGEYCTRVIMTRLPFPCPDDPVLCTHAEYLRSKGKDPFHI 609 Query: 568 VQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 + +P + Q GRL+R D G + D RL + YGA + S P Sbjct: 610 LTMPKVGLKFAQVAGRLMRREQDWGEFYVLDKRLRSKRYGAQIVKSTP 657 >UniRef50_C0QZ08 Helicase n=2 Tax=Brachyspira RepID=C0QZ08_BRAHW Length = 846 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 90/265 (33%), Positives = 135/265 (50%), Gaps = 9/265 (3%) Query: 372 LTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE-----SLLLPSPF 426 LTP++VA + + + + SATL+V+ + F++RLG + E + L SPF Sbjct: 572 LTPVTVAKNLNDFLYSRFDTVAMYSATLTVSKSFNFFSNRLGFDFIEKNKKIEIYLESPF 631 Query: 427 DYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL----AE 482 +Y A L + ++P + +L + + GR F+L TS + + ++ +E Sbjct: 632 NYEDNARLYIATDMPDVASDTFNDFTSKVLLKVCDVTGGRAFILFTSFSSLMNVYENTSE 691 Query: 483 QFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPF 542 + ++ + + LL F ++ N +L SFWEGVDV G L +VII KLPF Sbjct: 692 KLKSKNINALAQTASIHRHTLLDMFKASSNNVLYGVDSFWEGVDVAGKNLEVVIIPKLPF 751 Query: 543 TSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 P DP+ + R GG+ F + LP AVI KQG GRLIR DDRGV+ + D RL Sbjct: 752 AVPTDPISEGRYRYIEENGGNAFLDYALPFAVIKFKQGFGRLIRSKDDRGVVFVLDKRLY 811 Query: 603 MRPYGATFLASLPPAPRTRDIARAV 627 + YG F+ SLP A R R + Sbjct: 812 TKTYGTQFIQSLPNAKVLRGSMREI 836 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 80/255 (31%), Positives = 135/255 (52%), Gaps = 16/255 (6%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---- 60 F +G L++ + ++ R+ Q ++ A +A + L+ EAGTG GK++AYL PAL Sbjct: 136 FTENGTLSQLLKKYEYRQEQTELVEATIEAFNNNKHLISEAGTGIGKSFAYLIPALLWLK 195 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 K +++IST + LQ+Q+ S+D+P++ + + AL+KGR+NY+C++++ ++ L Sbjct: 196 ENKTRIVISTNTINLQEQIISKDIPSIIGGIAPSVKYALVKGRNNYVCIKKV-KEGLNDH 254 Query: 121 DL-----PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 D + D+ W N T DG I T + + W +V D C C Sbjct: 255 DKFDFEEQINFFEDI---DHWLNITKDGSI-TDLGYKPKGELWEMVCCDTDTCTHRKCEY 310 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLAD--MVVKESGFGELIPEADVMIFDEAHQLPDI 233 +DC+ K RK+ A +++VNHH+ AD + + +G L+P ++ DEAH + Sbjct: 311 LEDCYFYKMRKQLNAAQLLIVNHHILCADLSLYAETAGRYSLLPRYTKVLIDEAHNFENS 370 Query: 234 ASQYFGQSLSSRQLL 248 AS YFG S +L Sbjct: 371 ASSYFGDEGSKNGIL 385 >UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9J0_9ACTN Length = 1011 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 182/701 (25%), Positives = 294/701 (41%), Gaps = 110/701 (15%) Query: 4 DFAPDGQLAKAI--PGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP--- 58 DF+ G +A+ ++ R Q++MAV VT GQ V+E GTG GK+ AYL P Sbjct: 307 DFSSAGCVAQMFLSQNYEVRPTQQEMAVRVTSLQNSGQCGVLEVGTGVGKSLAYLLPSVS 366 Query: 59 -ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLE------- 110 A++ ++ ++T + AL +QL ++LP + + + ++KG +Y LE Sbjct: 367 RAVQNDIQIGVATKTNALAEQLIKKELPQLHEVYPKDFSYLIVKGAEHYPYLEGIDTLMR 426 Query: 111 ------RLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTS- 163 + + + + +IL+ ++ S + VD D+ + W ++ Sbjct: 427 EEFDTSQFKDIRFSSSKIKAEILTTAAIIYSACCELVDVDVDSL------GIRWNMIPKG 480 Query: 164 -------TNDNCLGSDC-PMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGEL 215 T N S C P Y + + R++ A +VV NH L D+ + L Sbjct: 481 DFVASHRTGSNHTLSTCAPHY---MLSELRERTQHAHIVVTNHALLATDIALGHV----L 533 Query: 216 IPEADVMIFDE----AHQLPDIASQ------------------------YFGQSLSSRQL 247 P I DE A Q+ D +Q F S +S Q Sbjct: 534 FPLVSNWIVDEAHGFADQVRDQWAQELSQDVFSDLFYTLGGIKTGLLGDMFSSSSNSEQK 593 Query: 248 LDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA 307 L K I+ A + + + D L D R + ++ + ++ Q A Sbjct: 594 PLLQKLISKAAVLVAQLRVKNEDLFDCLNTVVLDDRYHFSRGAHTHMIQRVDSSIVSQDA 653 Query: 308 F-LLLD---------DTL-----ELCYDVA-KLSLGRSALLDAAFERATLYRTR----LK 347 + LD DTL +LC ++ + SL R D F+R Y + + Sbjct: 654 WNAFLDKMSEFAKTFDTLKAVLIQLCKAISNEASLHR----DVDFKRVCAYVSSYLGVIT 709 Query: 348 RLKEINQPGYSYWYECTSR----HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVND 403 RL + ++ G+ Y E + L L + + S ++TSATLS+ Sbjct: 710 RLTQGSEDGFVYTVERVKQKKAYQTYLKEMCLDIGKRLYTDWYLDAQSVLYTSATLSIEQ 769 Query: 404 DLHHFTSRLGIEQ-----AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRP 458 +F +G+++ E+ LPSPFDY + V NL + L+ +L Sbjct: 770 SFEYFDHSVGLDRLNSDRVETKTLPSPFDYENHMGVIVPNNLVLPQHEKYIQCLSNLLFD 829 Query: 459 IIEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQ-GETSKGQLLQQFVSAGNAL 514 I A NG L T+ M ++ + + L +L Q TS Q+++ F A Sbjct: 830 IHVAMNGSVLTLFTNRREMEAVSSKLVPRLESHGLTLLEQLPTTSAQQIMRGFKKDTTAS 889 Query: 515 LVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAV 574 LVA SFWEG+D GDTL V+I +LPF P DP+++A E R + LP A+ Sbjct: 890 LVALKSFWEGIDAPGDTLRCVVIPRLPFVPPTDPIVEALTE----RDSSTWWNYVLPRAI 945 Query: 575 ITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 ++Q GRLIR D G+++I D R++ + YG L +LP Sbjct: 946 TEVRQAAGRLIRTQHDSGLVIIADTRVLSKAYGKHVLHALP 986 >UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C0WTL9_LACBU Length = 945 Score = 159 bits (403), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 164/645 (25%), Positives = 276/645 (42%), Gaps = 77/645 (11%) Query: 38 GQPLVVEAGTGTGKTYAYLAP---ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYT 94 +PLV+EA TG GK+ Y P A+K V+IST + LQ QL ++ LP ++++L + Sbjct: 284 AKPLVIEAPTGIGKSLGYSLPFSYLASAQKPVVISTATTYLQFQLQNQTLPLLNQSLPFK 343 Query: 95 GNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTC-VSVAE 153 N +LKG S+Y+ L + + L D VQ + W T GD+ ++V + Sbjct: 344 INSVILKGASHYIDLNKF-RHLLFVADSSVQTAFIKAQILVWLTMTTTGDLDELHLNVEQ 402 Query: 154 DSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG 213 W + + L ++ P Y + F+ KKA +AD ++VNH L K F Sbjct: 403 TPFVWT-IQHSGVKWLDANSPFYDEDFLRYNLKKAQNADFIIVNHSYLL-----KNWQFF 456 Query: 214 ELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL--------DLAKDITIAYRTELKDT 265 P ++ DE Q + A + + ++ ++ D+ + + R Sbjct: 457 SGFPVKPYLLIDETQQFAETAIRNNQKQINPLTVMSAVNRVRGDIQEGHYKSARDAFSGN 516 Query: 266 QQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLS 325 L AD L +S + L + +R +++AN Q+ + + + A ++ Sbjct: 517 SVLNNSADDLDESLNQIKSLLKQLTHRL-YSQMIANQQLHKNASFFVRLIPISDLKAIIN 575 Query: 326 LGRSALLDAAFERATLYRTRLKRLKEINQP-------GYSYWYECTS--RHFTLALTPLS 376 R + +++ + ++ EI+ YS Y+ F LT L Sbjct: 576 ENRETITRLQDKQSEVEDLLIRLNSEIDHSTDAFTNRDYSSIYDFYEDFNEFAEKLTFLL 635 Query: 377 VADKFKELMAQKPGSWIFTSATLSVN------------DDLHH----------------F 408 E + W+ + +N D L+H F Sbjct: 636 STIDMDESAINQNVVWVTVNHVKDINSFTINQGILKTEDYLNHRIYASFEPPTFTGATIF 695 Query: 409 TSR--------LGIEQAESLL--LPSPFDYSRQALLCVL----RNLPQTNQPGSARQLAA 454 +SR LGI++ + + L S FD QA + ++ R TN +Q+A Sbjct: 696 SSRRSQFIFNLLGIDRKAASVRRLQSDFDPKNQARIYLIDKQSREHFITNSDDYLQQVAQ 755 Query: 455 MLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA----TMTLPVLLQG-ETSKGQLLQQFVS 509 + I +A+ + +L S ++ QF + T T VL QG + +L +QF+ Sbjct: 756 SIEKIYQASPRQTLVLFNSLKAIKK-THQFLSKDGFTATHLVLAQGVNGTAARLSKQFIH 814 Query: 510 AGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQ 569 A+L+ ++FWEGVD L +II +LPF +P+DP A R +G +PF + Sbjct: 815 NEPAILLGANTFWEGVDFPAHLLENLIIAQLPFDTPEDPYNHALYSVERSKGKNPFYSLA 874 Query: 570 LPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASL 614 LP A + L+QG+GRL+R D G + + D RL + YG T L +L Sbjct: 875 LPKATLRLRQGMGRLLRTKADYGTIFVLDPRLTTKRYGQTILTNL 919 >UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (DnaQ-like) (DinG-like helicase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES4_9BACT Length = 960 Score = 158 bits (400), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 90/256 (35%), Positives = 137/256 (53%), Gaps = 9/256 (3%) Query: 369 TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-----EQAESLLLP 423 T P+ V + L+ Q IFTSATLS+ F ++ G+ + ++ Sbjct: 678 TFCYAPVEVGEHLNRLLYQNIPCIIFTSATLSIRGSFKFFLNQSGLSLVTEKNVRQSIVE 737 Query: 424 SPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQ 483 SPFDY +Q+LL + LP+ Q L I+ N L TS+ + + + Sbjct: 738 SPFDYDKQSLLLIGSFLPEYKDKFFQSQALGCLEQILTTTNVGTMALFTSYKDLDAVYDH 797 Query: 484 FRATM---TLPVLLQGE-TSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDK 539 T+ P QG+ S+ LL +F + NA+L+ TSSFWEGVD++GD+LSL+I+ K Sbjct: 798 LSDTLFHLNRPFFAQGKGVSRNSLLDEFKKSKNAVLLGTSSFWEGVDIQGDSLSLLILYK 857 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 +PF P +PL++A ++ D F + LP+A++ L+QG GRLIR DRGV++I D+ Sbjct: 858 IPFQVPSEPLVEALIDKLERENKDSFMHLMLPNALLRLRQGFGRLIRSKTDRGVVLIMDS 917 Query: 600 RLVMRPYGATFLASLP 615 R+ + YG F LP Sbjct: 918 RVSKKKYGIYFKQILP 933 Score = 158 bits (399), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 101/263 (38%), Positives = 131/263 (49%), Gaps = 13/263 (4%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---- 60 FA DG A P F+ R Q MA V A K LVVEAGTG GK++AYL PA+ Sbjct: 259 FAEDGIFASKFPNFEFRSGQMTMAEEVADAFSKQDFLVVEAGTGVGKSFAYLVPAIDFSN 318 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 R K KVI+ST +K LQ+QL+ +DLP + K L L+KGR NY+C ER Q+ L Sbjct: 319 RNKSKVIVSTNTKNLQEQLFFKDLPQLKKILPLPFQAVLVKGRENYIC-ERRWQELLQEQ 377 Query: 121 DLPVQILSDVILLR--SWSNQTVDGDISTCVSVAEDSQA--WPLVTSTNDNCLGSDCPMY 176 + LL W T GD+S S ++ W + S C G CP++ Sbjct: 378 TRGITSYDAYGLLNLLVWKEHTNTGDVSENSSFDKNRFGVLWHKICSDRYLCGGRKCPLF 437 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 + C+V+K RK A +VV NH L LAD + S GE ++ DEAH L AS+ Sbjct: 438 QSCYVMKLRKNIETASIVVANHSLLLADAQMDNSTLGEY----QYLVIDEAHNLMSAASK 493 Query: 237 YFGQSLSSRQLLDLAKDITIAYR 259 G +LS L L + R Sbjct: 494 NLGFTLSYVDLNSLFNQLVYTSR 516 >UniRef50_D0L9M3 Helicase c2 n=6 Tax=Actinomycetales RepID=D0L9M3_GORB4 Length = 699 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 89/201 (44%), Positives = 114/201 (56%) Query: 424 SPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQ 483 SPFDY R A+L V R+LP+ + G A + L +I+A GR L +S ++ AE Sbjct: 484 SPFDYPRSAILYVARHLPRPGRDGIAEKTMTELAELIDAAGGRTLGLFSSMRAAKEAAEA 543 Query: 484 FRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFT 543 R PVL QGE + L+++F L T S W+GVDV G +LSLV+ID++PF Sbjct: 544 IRERCDHPVLCQGEDTTSSLVRRFTEDPRTCLFGTLSLWQGVDVPGPSLSLVVIDRIPFP 603 Query: 544 SPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 PDDPLL AR RGG+ F V A + L QG GRL+R DDRGV+ + D RL Sbjct: 604 RPDDPLLTARQRAVDARGGNGFLSVAANHAALLLAQGAGRLLRSVDDRGVVAVLDPRLAT 663 Query: 604 RPYGATFLASLPPAPRTRDIA 624 YG +ASLPP RT D A Sbjct: 664 AGYGGYLMASLPPFWRTTDPA 684 Score = 147 bits (370), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 99/255 (38%), Positives = 133/255 (52%), Gaps = 27/255 (10%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR----AKKKVIISTGS 72 G R+ Q MA AV AI+ G+ L V+AGTGTGK+ AYL PA+R + + V++ST + Sbjct: 19 GGARRDGQVTMASAVAHAIDTGEHLAVQAGTGTGKSLAYLVPAIRHAVDSGRTVVVSTAT 78 Query: 73 KALQDQLYSRDLPTVSKALK----YTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILS 128 ALQ QL RDLP ++ ALK A+LKGR NYLCL ++ D P L Sbjct: 79 IALQRQLIERDLPRLAGALKGPLGREPTFAILKGRGNYLCLNKIHAGT---ADEPDTELF 135 Query: 129 D----------VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG-SDCPMYK 177 D V LR WS+ T GD D +AW V+ T CLG ++C + Sbjct: 136 DPFELSRTGREVTRLREWSSDTETGDRDDLTPGVND-RAWRQVSVTARECLGAANCSYGE 194 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 DCF AR+++ DVVV NH L D S ++PE DV+I DEAH+L D + Sbjct: 195 DCFAEVARRRSAKVDVVVTNHALLSIDATSPAS----ILPEHDVVIIDEAHELVDRITSV 250 Query: 238 FGQSLSSRQLLDLAK 252 +S+ + LA+ Sbjct: 251 STAEVSAATIALLAR 265 >UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03S23_LACBA Length = 948 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 167/650 (25%), Positives = 279/650 (42%), Gaps = 84/650 (12%) Query: 41 LVVEAGTGTGKTYAYLAPAL---RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNV 97 ++VEA TG GK+ YL P + + V++ST + LQ+QL + +P +++ + +T N Sbjct: 283 MIVEAPTGIGKSLGYLLPMAYLGQTGRPVVVSTATTLLQEQLLDQTIPLLNQIVPFTVNA 342 Query: 98 ALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQA 157 L+KG +YL L+R L + Q + L W T GD+ + Sbjct: 343 VLVKGSRHYLDLQRFAT-TLNVAETSKQTQLLKLRLLVWLTMTTTGDLDELHLATYRAPY 401 Query: 158 WPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIP 217 + + ++ + D P Y D F+ + + A V++VNH +L++ + GE + Sbjct: 402 FQEIV--HEGAVTVDNPFYDDDFIRRRDHRMAQAQVIIVNH-AYLSEHAL---ALGEQLQ 455 Query: 218 EADVMIFDEAHQLPDIASQYFGQSLSSRQLL--------DLAKDITIAYRTELKDTQQLQ 269 + ++ DEA L + + + QLL D+ ++I + Q Sbjct: 456 QP-YLVIDEAQHLTESTLKQRRTQVKFAQLLNELHHIQRDINREIGPSLLRLFAADTQAT 514 Query: 270 KCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQ-------------------------- 303 RL ++Q QL LR LAN + Sbjct: 515 LTLHRLLSASQTLETQLTTLVDHLFLR-FLANKRLNNHNQVIEELVSAQALTEEIDRSRT 573 Query: 304 IQRAFLLLDD------TLELCYDV--AKLSLGRSALLDAAFERATLYRTRLKRLKEI--- 352 I RA + DD L YD A+ + L + R L+ ++ +L EI Sbjct: 574 IDRATMATDDLLAGLNALRQRYDQQQAQFTSAERYLFEQVNTRVHLFDDQMGQLLEILRQ 633 Query: 353 ---NQPGYSYWYECTSRH------FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVND 403 P +W T H LA L+ + + + T ATL + Sbjct: 634 VVDQAPASLFW--LTMNHVGDRTSLQLASGLLATEGFLSQHLYAGFQPVLLTGATLFSSG 691 Query: 404 DLHHFTSRLGI--EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSA---RQLAAMLRP 458 + + + EQ + + S FDY +QA L + + P ++ A L+A + Sbjct: 692 RSQYVLDQFDLQREQTVTHRMRSSFDYGKQAQLLMADSGPNLSRVAPADYVTYLSAAISQ 751 Query: 459 IIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP------VLLQGET-SKGQLLQQFVSAG 511 I A N + +L S +++ + +Q +T P + QG + S+ ++ ++F ++ Sbjct: 752 IAGAVNKQTLILFNSLSVIEQVYQQL---VTQPEFARRDIFAQGVSGSRERITKRFATSH 808 Query: 512 NALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLP 571 A+L+ +SFWEG+D+ + L L+I+ +LPF SPD +KA G +PF LP Sbjct: 809 GAILLGAASFWEGIDLPSEQLELLIVTRLPFDSPDRVFVKANYARLEAAGKNPFYNAALP 868 Query: 572 DAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPA-PRT 620 A + L+QG+GRLIR D G +VI D RLV R YG + L +LP P+T Sbjct: 869 AATLKLRQGIGRLIRTPHDYGAVVILDQRLVERQYGQSILRALPAELPKT 918 >UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus RepID=C5D3B0_GEOSW Length = 921 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 91/253 (35%), Positives = 139/253 (54%), Gaps = 12/253 (4%) Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL--LLPSPFDYSRQ 431 P+ + + F E + S + TSATL++N + SR G+ + +PSPF Y Q Sbjct: 650 PIQLDEFFAERLFMPKKSIVLTSATLTMNGSFAYIISRFGLSDFYPICQTIPSPFSYKEQ 709 Query: 432 ALLCVLRNLPQTNQPGSARQLAAMLRP----IIEANNGRCFMLCTSHAMMRDLAEQFRA- 486 A+L + + P + S + AA++ I + G+ +L TS+ +++ A + Sbjct: 710 AMLMIPSDFPPISSV-SLEEYAAVVAEGVAQIAKRIKGKMLVLFTSYELLKLTANAMKME 768 Query: 487 --TMTLPVLLQG--ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPF 542 ++ QG S +L + F A+L TS+FWEGVD+ GD LS+V+I +LPF Sbjct: 769 ERNEDYVLIAQGVQSGSATKLTKAFQQFDQAILFGTSNFWEGVDLPGDELSVVVIVRLPF 828 Query: 543 TSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 PDDP+++A+ E R +GG+PF E+ LP+AV+ KQG GRLIR D+G + + D RL Sbjct: 829 APPDDPVIEAKSEYIRAKGGNPFYELSLPEAVLRFKQGFGRLIRTKKDKGAIFVFDRRLT 888 Query: 603 MRPYGATFLASLP 615 YG FL SLP Sbjct: 889 SASYGKYFLNSLP 901 Score = 118 bits (296), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 125/233 (53%), Gaps = 23/233 (9%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKKKVIISTGSK 73 ++ R+ Q +M V +A+E Q ++EAGTG GK+ AYL P A +K+V+IST + Sbjct: 254 YERRDGQWEMMKLVYEALETSQHALIEAGTGIGKSLAYLIPSAFFAYEQQKRVVISTHTL 313 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 LQ QL RD+P + + + + VA+LKG+ NYL L++ +A Q DV+LL Sbjct: 314 QLQQQLLERDIPFLKEVVPFPLRVAVLKGKRNYLSLDKF----IAFLQEHHQNY-DVVLL 368 Query: 134 RS----WSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAM 189 + W QT GD+ + + WPL+ ++ G K F +A+++A Sbjct: 369 KCQLLVWLTQTETGDMDELNASSGARLFWPLLVMDEEDNGG------KYNFFWRAKQRAE 422 Query: 190 DADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 +A +V+ NH L D+ L+P+ + MI DEAH L ++AS YFGQ + Sbjct: 423 EAHIVITNHAFLLHDVTASTP----LLPDYEHMIMDEAHHLEEVASHYFGQQV 471 >UniRef50_Q73F47 ATP-dependent helicase, DinG family, putative n=1 Tax=Bacillus cereus ATCC 10987 RepID=Q73F47_BACC1 Length = 915 Score = 156 bits (395), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 158/620 (25%), Positives = 270/620 (43%), Gaps = 83/620 (13%) Query: 21 REPQRQMAVAVTQAIEKGQP-LVVEAGTGTGKTYAYLAPALRAKK-------KVIISTGS 72 R Q QMA+ + + +E + +++EA GTGK+ L P L +K V+ +T + Sbjct: 26 RASQLQMALDIGEFLESSKRVMIIEAPVGTGKSLGALVPVLVDRKYNTFDKRNVMYATAT 85 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCL-------ERLEQQALAGGDLPVQ 125 LQ QL ++P + K L N + KG+S+Y C +++E + + D Q Sbjct: 86 INLQGQLMRSEIPLLRK-LGLVNNPIVAKGKSHYYCHFRMKNSSQKIENELFSRTD---Q 141 Query: 126 ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTN-DNCLGSDCPMYKDCFVVKA 184 + + S + Q + + ++ + + W V +N NC M + + Sbjct: 142 HVLEKFFRLSKTGQRSELEEEHGFNI--EDKKWKRVELSNKSNCRACQFSMVCPTIIHRR 199 Query: 185 RKKAMDADVVVVNH----HLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 R KA++ DVV+ NH + FL M + L + ++I DEAH D + G+ Sbjct: 200 RFKAIENDVVITNHDQLINSFLNAMDMDSIYEPVLKTDMGLVIIDEAH---DFLETFIGR 256 Query: 241 SLSSRQLLDLAKDITIAYRTEL-----KDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNL 295 L K T++Y L +D + +K DRL + Sbjct: 257 ---------LEKTFTLSYLRNLEKYIERDNYKWKKAVDRLG-------------AWVKRN 294 Query: 296 RELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTR---LKRLKEI 352 +E R +LL D + + K+ L A + RA + L R + Sbjct: 295 KEYNKKSDAGR-YLLTDFVFSILKTLQKIL--NENLFQAKYRRAEILDELSGILHRF--L 349 Query: 353 NQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQ------KPGSWIFTSATLSVNDDLH 406 + Y+ W F + + + +KE+ Q IF S TL+VN D Sbjct: 350 QKEKYTSWISLEDNEFHV------IENNYKEVFRQMLDYIKNSNKIIFMSGTLTVNKDFS 403 Query: 407 HFTSRLGIEQAESL--LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANN 464 + ++ I+ E++ +L SPFDY QAL+ + + L N+ +R ++ Sbjct: 404 YIKNQWNIKSGEAVTKVLNSPFDYKNQALIYIPKKLGNPNKDEFIENALKEIRKLLRLTG 463 Query: 465 GRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSF 521 GR +L TS M + + AT +P+ QGE+ L ++F ++LV + SF Sbjct: 464 GRTLLLNTSKDHMDEFYNGIKVELATSNVPLYKQGESGVENLTKRFKELEESVLVGSGSF 523 Query: 522 WEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGV 581 + G + G +L+ VII+KLPF + +DP+++ + ++ D F +V P + L Q V Sbjct: 524 FSGFSIAGTSLTSVIINKLPFPAFNDPIIE--LMSMGIKKEDRFKKVSYPMMINKLDQAV 581 Query: 582 GRLIRDADDRGVLVICDNRL 601 GRLIR +D G++ I D R+ Sbjct: 582 GRLIRSIEDYGIVTILDERI 601 >UniRef50_D2MI55 Helicase c2 n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MI55_9BACT Length = 257 Score = 155 bits (393), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 135/229 (58%), Gaps = 9/229 (3%) Query: 395 TSATLSVNDDLHHFTSRLGI---EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQ 451 TSA+L+V+ + +G+ E+ L++ SPFD+ Q+LL V ++P+ + Sbjct: 2 TSASLAVDKNFDFQRKNIGLSDNERFRGLIVDSPFDFRTQSLLLVPSDMPEPGREDYEDS 61 Query: 452 LAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM----TLPVLL--QGETSKGQLLQ 505 LA +L I NG +L TS++ + + E+ + +PV L QGE + LL+ Sbjct: 62 LARILSDSISVTNGNALVLFTSYSSLNRVYEKTGKILERIGAVPVSLFKQGEMPRSLLLE 121 Query: 506 QFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPF 565 +F + GN++L AT SFWEGVD+ GD+L +V+I +LPF P DP+ +A++E + D F Sbjct: 122 KFKTLGNSVLFATDSFWEGVDIPGDSLRMVVICRLPFKVPTDPVTEAKIEYMERQDIDSF 181 Query: 566 DEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASL 614 E LP AV+ KQG GRLIR DRGV+++ D R+V + YG F+ S+ Sbjct: 182 REYILPHAVLRFKQGFGRLIRTKTDRGVVMVLDKRIVSKYYGKFFINSV 230 >UniRef50_C0FSD6 Putative uncharacterized protein n=2 Tax=Roseburia RepID=C0FSD6_9FIRM Length = 669 Score = 155 bits (391), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 169/649 (26%), Positives = 284/649 (43%), Gaps = 72/649 (11%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYL----APALRAKKKV--IIST 70 G R Q+++++ + +A+++ + + EA GTGKT+AY+ + + KK+ +IST Sbjct: 21 GMNLRVKQKELSLEMLRALQENKLALCEAEVGTGKTHAYILALTVHNIYSDKKIPAVIST 80 Query: 71 GSKALQDQLYSRDLPTVSKALKYTGNV------ALLKGRSNYLCLERLEQQALAGGDLPV 124 + ALQ L +P +S L + + KG+ +Y+C RL+ + +L Sbjct: 81 STIALQKALTEEYIPQISGILLEHHVIDKPLSFVVRKGKRHYVCDSRLKIYETSLKNLQR 140 Query: 125 QILSDVIL-LRSWSNQTVDG-DISTCVSVAEDSQAWPLVTS-TNDNCLGSDCPMYKDCFV 181 ++ +++IL L Q D D+ +D+ P V N CP C Sbjct: 141 EVDANLILELARLGEQEFDRIDL-------DDAVLTPYVKGRINVFRCNKSCPYSLLCRF 193 Query: 182 VKARKKAM--DADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 + +KK M + D + NH+ LAD++ ++ G L P M+FDE+H+L D A Q + Sbjct: 194 MNFKKKCMTDNFDFQITNHNYILADLIGQKQGRKPLFPGYGAMVFDESHKLIDAARQMYS 253 Query: 240 Q-----------SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE 288 LS D R++L + + + DRLA G Sbjct: 254 TVWDEQDAEFIVGLSEVNRRTTGMDELTVLRSQLAEYNR--QIFDRLAGDLA------GN 305 Query: 289 PGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKR 348 G+ E++ + + LE + + G+ L +R +L Sbjct: 306 HTREGSRIEIVIGSMEKIYIRHMAKALEQLPLSYQENSGQKMRLQGLKKRCQELTDKLTI 365 Query: 349 LKEINQPGYSYWYECTSR-HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHH 407 +N W E L P+ + + +P I TS T+SV D H Sbjct: 366 F--LNSGNSICWMEKRENGRLALCAVPMELEQVLFRDIWSRPIPVIITSGTMSVRGDFSH 423 Query: 408 FTSRLGIEQAE-SLLL----PSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIE- 461 F G+ A S ++ PSPFD+ LL + +P N R + A++ I++ Sbjct: 424 FKRMTGLSFAALSRIMETSKPSPFDFQSNGLLYIPERMPFPNIRDD-RYIQAIMEEIVQI 482 Query: 462 --ANNGRCFMLCTSHAMMRDLAEQFRATMT-LPVLLQGETSKGQL--LQQFVSAGNALLV 516 A +G +L TS+ +M + + ++ P+ L G +G+L + F +GN +L Sbjct: 483 VSATHGHTLILFTSYWLMERVFYGLKEQLSDYPLFLMG---RGRLDVISSFRRSGNGVLF 539 Query: 517 ATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD----EVQLPD 572 A+ S EG+D+ GD LS +I+ KLPF P DP+++ + D FD ++ +P+ Sbjct: 540 ASDSAGEGIDLAGDILSSLIVVKLPFPVP-DPVMEYQRNQY-----DDFDLYRRDIIIPE 593 Query: 573 AVITLKQGVGRLIRDADDRGVLVICDNRLVMRP-YGATFLASLPPAPRT 620 +I L+Q GR IR D V I D+R +R Y A L ++P P T Sbjct: 594 MLIKLRQWFGRGIRREKDTAVFSILDSRASLRGRYRAEILNTMPTMPVT 642 >UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH Length = 939 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 90/259 (34%), Positives = 138/259 (53%), Gaps = 10/259 (3%) Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL--LPSPFDYSRQ 431 P VA+ + + S + TSATL++N RLG+ + + SPF Y +Q Sbjct: 662 PADVAELLENEFFHEKESVVMTSATLTMNHSFSFMQKRLGLSSHSCITEQIESPFAYDQQ 721 Query: 432 ALLCVLRNLPQTNQPGSARQLAAMLRPII---EANNGRCFMLCTSHAMMRDLAEQFRATM 488 + + + P + A+ II E +GR +L TS+ M+R + M Sbjct: 722 VQMFIPNDFPDIKYGNIDDFVYAVAEAIISLAEITSGRMLVLFTSYDMLRKAYYVLKEAM 781 Query: 489 ---TLPVLLQGETS--KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFT 543 ++ QG TS + +L + F S A+L+ TSSFWEGVD+ GD LS ++I +LPF Sbjct: 782 EKDKYMLIGQGITSGSRARLKKNFQSFDQAILLGTSSFWEGVDIPGDDLSSLVIVRLPFQ 841 Query: 544 SPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 P+ P+++A+ + + +PF E+ LP+AVI KQG GRLIR ++DRG++ +CD R+V Sbjct: 842 PPNHPVIEAKSAMLKKQKQNPFMELSLPNAVIKFKQGFGRLIRSSNDRGIVFVCDARIVN 901 Query: 604 RPYGATFLASLPPAPRTRD 622 YG F S+P P D Sbjct: 902 ARYGKYFTESIPKVPIHYD 920 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 8/235 (3%) Query: 9 GQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKK 64 G+L++ + ++ R Q++M+ + A ++EAGTGTGK+ AYL PA+ + + Sbjct: 248 GKLSEHLSMYEKRAGQQEMSETIYDAFTSSNHALIEAGTGTGKSLAYLLPAVYYAVKQNQ 307 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 KVIIST + LQ QL ++P + ALLKG+++Y+ LE+ + G Sbjct: 308 KVIISTHTTQLQSQLLEEEIPLIHAISDIPFQAALLKGKNHYISLEKFSIELYEQGQDNY 367 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 I +L W +T GD+ + +++ + + P ++ + +A Sbjct: 368 DIALTKAMLLIWITETNTGDVEEVQLPTSGYIFFRKISADTEKAVNPQSPWFQYSYYQQA 427 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 RKKA A++++ NH L DM + +P +I DEAH + A+ ++G Sbjct: 428 RKKAQRANIIITNHALLCTDMFNDYA----FLPSYQRVIIDEAHHFEEQAAHHYG 478 >UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactobacillus RepID=D0R432_LACJF Length = 938 Score = 154 bits (390), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 173/653 (26%), Positives = 300/653 (45%), Gaps = 90/653 (13%) Query: 41 LVVEAGTGTGKTYAYL---APALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNV 97 LVVEA G+GKT++YL A L + +K++++T +K LQ+Q+ +++P + + + + Sbjct: 284 LVVEAPNGSGKTFSYLMAYAYELYSGRKLVVATPTKVLQEQILKQEIPQLLRVTRLDLDA 343 Query: 98 ALLKGRSNYLCLERLEQQALAGGDLPVQ---ILSDVILLRSWSNQTVDGDISTCVSVAED 154 ++K S+YL L+ +L D P+Q IL IL+ W +T GD+ Sbjct: 344 QIVKSSSHYLDLDGF-YNSLYQTDNPIQQTLILQMGILI--WLTETETGDLDELQLTNYQ 400 Query: 155 SQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGE 214 + + + D +G+ Y F AR + AD+++ NH +LA+ + +S +G+ Sbjct: 401 APLFAAIEHPGDARIGTSFAEYD--FWNLARSRQEQADILITNH-AYLANHYM-DSIWGQ 456 Query: 215 LIPEADVMIFDEAHQ-LPDIASQ---------YFGQSLSSRQLLDLAKDITIA-YRTEL- 262 ++ DE+H+ + ++AS ++G R LL A+D A + L Sbjct: 457 ----NPFLVVDESHRFVENVASSRNDSLQFESFWGMCSHLRNLLFYAEDSAKARFGNNLE 512 Query: 263 ---------KDTQQLQKCADRLAQSAQD---FRLQLGEP-------GYRGNLRELLANPQ 303 KDT L +++ Q+ D F E G++G ++L N + Sbjct: 513 FKLILDKLEKDTNDLIHSINKIQQAFYDNRKFATSWEEKRQNAITLGFQG--QDLFNNIK 570 Query: 304 IQRAFL-LLDDTLE-----------LCYDVAKLSLGRSALL-----------DAAFERAT 340 + L L+ D +E L Y K L +L D E+ Sbjct: 571 HFKHLLNLMQDNIEIVRQETNQLLFLLYHQQKNLLTNDDVLIRDLQEEIDQLDYYSEQNY 630 Query: 341 LYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSV--ADKFKELMAQKPGSWIFTSAT 398 L +L K+++ G+ + LT L++ ++ K+L +F SAT Sbjct: 631 LLLDQLSDPKKLDHEGFVLEISNEDDPLSTNLTWLTLDPEEEVKQLYHYFDKK-LFISAT 689 Query: 399 LSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVL----RNLPQT-NQPGSARQLA 453 L+ DD + L ++ ++L + + + L V N P+ N P ++ Sbjct: 690 LAEQDDFSYTIKNLYLDPKKTLTYRAKPSFKVEKHLKVYALSDNNAPEDPNSPEYETFIS 749 Query: 454 AMLRPIIEANNGRCFMLCTSHAMMRD----LAEQFRATMTLPVLLQGET-SKGQLLQQFV 508 +L I + + +L T+ ++RD L+E A +L QG T S ++ ++F Sbjct: 750 NLLTQIKDYRH--VLVLFTNLDVIRDVFSRLSENSNALKDYEILAQGLTGSNEKIAKRFG 807 Query: 509 SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLR-GGDPFDE 567 A A+L+ +SFWEG+D + + + L I+ +LPF SPD P +K R E + + G D E Sbjct: 808 IAEKAILLGANSFWEGIDFKHNGVDLAIVTRLPFESPDQPEVKLRTECLKKQVGADKIFE 867 Query: 568 VQ-LPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPR 619 V LP A++ +QG GRLIR+ D GV V+ D R+ + YG FL+ LP + + Sbjct: 868 VDTLPRAILRFRQGCGRLIRNERDHGVFVVLDQRVWNKSYGEQFLSGLPVSAK 920 >UniRef50_C2BW38 ATP-dependent helicase DinG n=3 Tax=Mobiluncus RepID=C2BW38_9ACTO Length = 711 Score = 152 bits (385), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 91/253 (35%), Positives = 134/253 (52%), Gaps = 5/253 (1%) Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE----QAESLLLPSPFDYS 429 PL VA K + + + I TSATL + ++G++ + E+L + SPF + Sbjct: 444 PLDVAGKLANRLWNEH-AIIATSATLKLGGTFAPLMHKMGLQLDTPKPETLDVGSPFRHD 502 Query: 430 RQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT 489 RQ +L + R+LP + L ++EA+ G L +S M E R Sbjct: 503 RQGILYLARDLPAPTRGEHPDVFWNRLVDLVEASGGGALGLFSSRKMAERAGEVLRERTD 562 Query: 490 LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPL 549 LP+++QGE S L++ +A L+ T S W+GVD+ G+T LV+ID++PF P DP+ Sbjct: 563 LPIMVQGEDSMAALVKDMREDASACLMGTLSLWQGVDLPGNTCRLVLIDRIPFPVPSDPV 622 Query: 550 LKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGAT 609 ++AR + + GG F EV L A + L QG GRL+R A DRGV+ + D+RL YG Sbjct: 623 IEARCDAVKRAGGSDFMEVSLTHAALLLAQGTGRLLRSATDRGVVAVLDSRLATARYGGF 682 Query: 610 FLASLPPAPRTRD 622 ASLPP T D Sbjct: 683 LRASLPPLWPTED 695 Score = 115 bits (287), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 90/297 (30%), Positives = 134/297 (45%), Gaps = 52/297 (17%) Query: 3 DDFA---PDGQLAKAIP------GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTY 53 D FA P +L KA+ G R Q MA AV + + G L V+AGTGTGK+ Sbjct: 28 DSFAGYIPSSELQKALTAAVSLLGGSERPGQAAMAAAVERTLHSGGKLAVQAGTGTGKSL 87 Query: 54 AYLAPA----LRAKKKVIISTGSKALQDQLYSRDLPTVSKALK-YTGN---VALLKGRSN 105 YL PA L +V+IST + ALQ Q+ ++D P +A++ TG+ V +LKG N Sbjct: 88 GYLLPALLYCLHEDARVVISTATLALQSQIITKDAPLAVEAVQNVTGSALRVEVLKGWQN 147 Query: 106 YLCLERL---------------------------EQQALAGGDLPVQI---LSDVILLRS 135 Y+CL +L E A G Q+ ++ L Sbjct: 148 YVCLHKLNGGYEGSEDDLFSTMEDSPFSGIAGSGETTAGPGARTTRQMQGFAAETKRLYE 207 Query: 136 WSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVV 195 W+ +T GD +++W V+ ++ C+G CP +CF V AR KA A +VV Sbjct: 208 WARETTTGDRDEAPR-GITARSWRQVSLSSLECVGEKCPFRSECFQVSARDKAAQAQIVV 266 Query: 196 VNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAK 252 NH + + ++ +G +P + +I DEAH+L + S+ L AK Sbjct: 267 TNHAM----IGLEAAGKQNPLPPCEAIIIDEAHELSERVRSQASTEFSANMLASCAK 319 >UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria RepID=C8WX41_ALIAD Length = 952 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 106/315 (33%), Positives = 164/315 (52%), Gaps = 25/315 (7%) Query: 346 LKRLKEI--NQPGYSYWYECTSR----HFTLALTPLSVADKFKELMAQKPGSWIFTSATL 399 + R++E+ P W E + ++ P+ VA K+ + S + TSATL Sbjct: 627 IARMQEVLDEHPDDVTWAEVQTGGSRVRVSVHRAPVDVARVLKQHLFDPLRSVVLTSATL 686 Query: 400 SVNDDLHHFTSRLGIEQAE------SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQ-- 451 +VN + +LG+E+ + +PSPF +QA L V ++P Sbjct: 687 AVNGEFGFAIRKLGLEEHAREDRVIARTVPSPFAMDKQARLFVPSDVPDIAAAPPEEAAT 746 Query: 452 -LAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT---LPVLLQG-ETSKGQLLQQ 506 L A + + EA+ GR +L TSHA++R+ A RA + L +L Q + S+ LL+ Sbjct: 747 WLTASITDLAEASRGRMLVLFTSHALLRETARLARAPLAERGLSLLAQDLDGSRAALLEA 806 Query: 507 FVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD 566 F + +++ +FWEG+D+ GD L+ ++I +LPF P P+ AR+E G + F Sbjct: 807 FRAHPESVMFGAQTFWEGIDLPGDQLTSLVIVRLPFAPPTHPVTAARLERLEASGQNAFR 866 Query: 567 EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPP-APRT---RD 622 + LP+AV+ +QGVGRLIR DRGV+V+ D R+V + YG+ F S+P PR RD Sbjct: 867 ALSLPEAVVRFRQGVGRLIRTQQDRGVIVVFDKRIVTQRYGSMFWKSIPGLRPRVVPERD 926 Query: 623 IARAVR-FLA-IPSS 635 + VR FL PSS Sbjct: 927 LVAEVRKFLRDTPSS 941 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 139/258 (53%), Gaps = 9/258 (3%) Query: 3 DDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP---- 58 D P G LA ++ GF+ R Q M AV QA+ +G+ +VEAGTGTGK+ AYL P Sbjct: 247 DMLMPGGPLAASLRGFEARPGQLAMVEAVAQALAEGKHAMVEAGTGTGKSLAYLVPAALI 306 Query: 59 ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA-L 117 A+ + V++ST + +LQDQ+ RD P + + + + KGR+NY+CL ++ +A L Sbjct: 307 AMATGEPVVVSTHTLSLQDQIAERDFPLLRRIFGDELRLVVQKGRNNYVCLRKVRSEARL 366 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 + PV+ + ++ L W +T DG T + W V S +++C+ CP ++ Sbjct: 367 STMATPVEDIQGIMALLVWLTETPDGTRETLSKSSVGPGLWARVQSESESCINRRCPFFQ 426 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 C+ + ++ A A ++V NH L ++D+ ++P+ + ++ DEAH L + A+ + Sbjct: 427 PCYYFRTKQAAQAAHLIVTNHSLVMSDLASDH----RVLPKYEHLVVDEAHHLEEQATNH 482 Query: 238 FGQSLSSRQLLDLAKDIT 255 G + S + LA + Sbjct: 483 LGFEVQSGVMAALAHRLV 500 >UniRef50_C5BWL9 Helicase c2 n=14 Tax=Actinomycetales RepID=C5BWL9_BEUC1 Length = 679 Score = 151 bits (382), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 101/262 (38%), Positives = 138/262 (52%), Gaps = 7/262 (2%) Query: 370 LALTPLSVADKF-KELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA--ESLLLPSPF 426 L + PL VA L+A + + + TSATL + S LG+ + + SPF Sbjct: 411 LRVAPLDVAGLVATHLVADR--AAVLTSATLELGGSFAPVASSLGLATGAYRAERVASPF 468 Query: 427 DYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA 486 DY+RQ + V R+LP+ G ++++ A L +++A GR L +S A++ R Sbjct: 469 DYARQGIRYVARHLPRPGSDGPSQEMLAELAELVQAAGGRTLGLFSSRRAAEVAAQEIRD 528 Query: 487 TMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPD 546 L VL QGE L+++F L T S W+GVDV GD+ LV ID++PF PD Sbjct: 529 RTGLDVLCQGEDVLPTLVRRFAEEEATSLFGTLSLWQGVDVPGDSCRLVTIDRIPFPRPD 588 Query: 547 DPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPY 606 DP+ ARME RGG+PF V A + L QG GRL+R DRGV+ I D+RL Y Sbjct: 589 DPVGAARMEVVAARGGNPFMTVAATHAALLLAQGAGRLLRRTTDRGVVAILDSRLATARY 648 Query: 607 GATFLASLPPAPRTRD--IARA 626 G SLPP T D +ARA Sbjct: 649 GEFLSRSLPPMWPTTDPAVARA 670 Score = 140 bits (352), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/245 (36%), Positives = 131/245 (53%), Gaps = 35/245 (14%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 G R Q +MA+AV A + G PL+V+AGTGTGK+ AYL PA+ + +++I+ST + Sbjct: 40 GGTRRAGQHEMALAVAHAFDDGVPLLVQAGTGTGKSLAYLVPAIVRAVTSDERIIVSTAT 99 Query: 73 KALQDQLYSRDLPTVSKALKYT----GNVALLKGRSNYLCLERL-------EQQAL---- 117 ALQ Q+ ++DLP L+ + VALLKG NY+C ++ ++ L Sbjct: 100 LALQRQILTKDLPLARGVLEASLPRPPAVALLKGWHNYVCRHKVTGGYPAEDEPGLFSLD 159 Query: 118 AGGDLPVQ---------ILSDVILLRSWSNQTVDGDISTCV-SVAEDSQAWPLVTSTNDN 167 G D P + + +V+ LR W+ +T GD V V E +AW V+ T Sbjct: 160 GGADHPRRSAEVGEFETLGEEVVRLREWAEETTTGDRDDLVPGVGE--RAWRQVSVTAME 217 Query: 168 CLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEA 227 CLG CPM +CF AR+ + ADVVV NH + + + G ++PE D ++ DEA Sbjct: 218 CLGQKCPMLAECFPEAARRASRSADVVVTNHAM----LGIAAGGSPGVLPEHDGLVVDEA 273 Query: 228 HQLPD 232 H+L D Sbjct: 274 HELAD 278 >UniRef50_P50831 Probable ATP-dependent helicase ypvA n=105 Tax=Bacillales RepID=YPVA_BACSU Length = 641 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 163/631 (25%), Positives = 270/631 (42%), Gaps = 100/631 (15%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKV----IISTGS 72 GF R+ Q MA + +A ++ + + EAG GTGKT YL A+ + V II+ Sbjct: 36 GFDLRDEQVFMAFQLERAFKEKKVMFAEAGVGTGKTLVYLLFAISYARYVGKPAIIACAD 95 Query: 73 KALQDQLYSR--DLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD--------- 121 + L +QL + D+ +++ L + L K YLCL++LE+ D Sbjct: 96 ETLIEQLVKKEGDISKLAEHLDLKIDTRLSKSHEQYLCLKKLEKTMQRSDDDKWLDLYES 155 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVT-STNDNCLGSDCPMYKDCF 180 LP + + R + GD +++ ++ W V+ + +CL C M C Sbjct: 156 LPSFVHESQAMQRFYPY----GDRKQYANLS--NEEWSDVSYDSFQDCLT--CDMRHRCG 207 Query: 181 VVKARKKAMDA-DVVVVNHHLFLADMVVKESGFGE----LIPEADVMIFDEAHQLPDIAS 235 + +R + D+++ +H ++ + +ES E L+P+ ++FDE H Sbjct: 208 LTLSRDYYRKSTDLIICSHDFYMEHVWTEESRKREGQLPLLPDHSAVVFDEGH------- 260 Query: 236 QYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNL 295 LL+ A + YR + L+ +RL Q+ D R + E L Sbjct: 261 -----------LLEFAAQKALTYRVK---QSTLELFLERLLQN--DIREEFAE------L 298 Query: 296 RE--LLANPQIQRAFLLLDDTLELC----------YDVAKLSLGRSALLDA-----AFER 338 E LLAN + ++L +++ E+ + V K + LLD FE Sbjct: 299 IEDALLANDEF--FYVLSEESKEVAGSHRLEIKNDHRVKKAADELCRLLDKIGEALVFES 356 Query: 339 A--TLYRTRLKRLKE-INQPGYSY---------WYECTSRHFTLALTPLSVADKFKELMA 386 T+ + L ++E + Q YS W E T + P +VA+ E + Sbjct: 357 EMYTIDQYELSVVEEYVEQMAYSLSLYQKDAISWLEKKEAESTFVVMPRTVAEVLGEKVF 416 Query: 387 QKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQP 446 K +IF+SATLS + LGI SL + SP+DY Q + + + Sbjct: 417 SKKIPYIFSSATLSEGGSFDYIADSLGIHDYLSLTVDSPYDYDEQMSINLYAKTDMDAEQ 476 Query: 447 GSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA-TMTLPVLLQGETSKGQLLQ 505 +A + + R GR +L S + + E A + P+ +G+ L++ Sbjct: 477 KTAETIETIKR-----YKGRTLVLFPSFEELNEFKELSAAWELPYPIFFEGDEEISSLVE 531 Query: 506 QFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPF 565 +F +L + WEG+D+ GD L V I LPF P DP+ A+ + DPF Sbjct: 532 KFQEEEETVLCSV-HLWEGLDIPGDALKNVTIWSLPF-PPHDPVFTAKRNGAK---KDPF 586 Query: 566 DEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 +EV LP ++ ++QG+GRLIR D G + I Sbjct: 587 EEVDLPYMLLRVRQGIGRLIRSNQDSGSIHI 617 >UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=53 Tax=Staphylococcus RepID=DING_STAAB Length = 897 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 156/651 (23%), Positives = 279/651 (42%), Gaps = 79/651 (12%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 G R Q +A + + + ++EA G+GK+ AYL AL K V+IST + Sbjct: 248 GLTYRPQQLYLAETILDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNT 307 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG--GDLPVQILSDV 130 K LQ QL +D+P +++AL + N L+K +S+Y+ L L Q L + V IL Sbjct: 308 KLLQSQLLEKDIPAMNEALNFKINALLIKSKSDYISL-GLISQILKDDTSNYEVNILKMQ 366 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVK-ARKKAM 189 +L+ W +T GDI + D + + P D ++ A Sbjct: 367 LLI--WITETPSGDIQELNLKGGQKMYF-------DQKIETYVPARHDVHYYNFIKRNAQ 417 Query: 190 DADVVVVNH-HLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL 248 + + + NH HL +D+ E+ +L + I DEAH+LPD A Q + Sbjct: 418 NIQIGITNHAHLIHSDV---ENSIYQLFDDC---IVDEAHRLPDYA---LNQVTNELSYA 468 Query: 249 DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEP---GYRGNLRELLA-NPQI 304 D+ + + + E ++L K D+L + +L + G + ++ E+ N Q+ Sbjct: 469 DIKYQLGLIGKNE---NEKLLKAIDQLEKQRILEKLDIAPIDIFGLKASMNEIHELNEQL 525 Query: 305 QRAFLLL-------DDTLELCYDVAKLSLGR-----SALLDA-----------------A 335 + DD + ++V A++D + Sbjct: 526 FSTIFTIINDSDVYDDDIHRFHNVFTFETKDILKDLHAIIDKLNKTLEIFNGISHKTVKS 585 Query: 336 FERATLY-RTRLKRLKEINQPGYSYWYECTS----RHFTLALTPLSVADKFKELMAQKPG 390 + LY + + K +++ + G++ + + L + +V D + + +K Sbjct: 586 LRKQLLYLKDKFKNIEQSLKAGHTSFISIKNLSQKSTIRLYVKDYAVKDVLTKQVLEKFK 645 Query: 391 SWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSA 449 S IF S TL N F + + + + ++ + + ++ Sbjct: 646 SLIFISGTLKFNHSFDAFKQLFNKDVHFNTFEVNTSLQSAKNTSVFIPSDVASYQYKNID 705 Query: 450 RQLAAMLRPIIE---ANNGRCFMLCTSHAMM---RDLAEQFRATMTLPVLLQGETSKGQL 503 +A+++ IIE + +C +L TS+ MM +D+ + VL Q + ++ Sbjct: 706 EYVASIVSYIIEYTTITSSKCLVLFTSYKMMHMVQDMLNELPEFEDYVVLTQQQNQNYKI 765 Query: 504 LQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGD 563 +QQF + A+L+ TS+F+EG D + + + V+I KLPF + + K + D Sbjct: 766 VQQFNNFDKAILLGTSTFFEGFDFQANGIKCVMIAKLPFMNKHNA--KYWLMDSEFTS-- 821 Query: 564 PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASL 614 F E LPDAV +QG+GRLIR+ +DRG++V D+RL+ Y F +L Sbjct: 822 TFKEYVLPDAVTRFRQGLGRLIRNENDRGIIVSFDDRLINSNYKNIFEQTL 872 >UniRef50_UPI0001C355EC helicase c2 n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C355EC Length = 765 Score = 148 bits (374), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 162/661 (24%), Positives = 289/661 (43%), Gaps = 69/661 (10%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL------RAKKKVIIST 70 G R+ Q+++A+++ +A+++ + + EA GTGKT+AY+ ++K +IST Sbjct: 118 GMAKRKSQKELALSMLRALQENKLALCEAEVGTGKTHAYILAVTIHNLFSQSKTPTMIST 177 Query: 71 GSKALQDQLYSRDLPTVSKALKYTG------NVALLKGRSNYLCLERLE--QQALAGGDL 122 + ALQ+ + +P +S+ L + + KG+S+++C RL+ + ++ + Sbjct: 178 STIALQEAITKEYIPQISRILLEHRIIDKPLSFVVRKGKSHFVCDSRLKTYESSIRNQNR 237 Query: 123 PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDC----PMYKD 178 P L W Q D+ +PL + S C P Sbjct: 238 PEDQGLLAQLGELWREQEHYLDLD----------GFPLTPYVKERINVSQCSEFCPHSSY 287 Query: 179 C-FVVKARKKAMDA-DVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 C F +R+ ++ D + NH+ LAD+V + G +L+P ++ +FDEAH+L D A Q Sbjct: 288 CRFASFSRRWLSESYDFQISNHNYILADVVNRREGKKKLLPYYNIAVFDEAHKLIDAARQ 347 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLR 296 + LS ++ L I+ + +Q+ + L++ + G + N Sbjct: 348 IYCTRLSENEIPKLIHLISPERFVDKSSQRQMMELCTGLSEKNTRLFQKTGGAFIQSNQM 407 Query: 297 ELLAN--PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEIN- 353 E ++ + + L + D + + + ++ + + +D+ T+ T +N Sbjct: 408 ENISRTIEEDRSTRLWIRDLIGMLEKLGRIFV--TVKMDSCGRVKTIRNTAQSIEDRLNV 465 Query: 354 ----QPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFT 409 + S+ + S P + + I TS T+SV + HF Sbjct: 466 FLSAKQNISWIEKSDSGGLEFCSLPRELERILYHDLWHTGVHSIITSGTISVGGNFDHFK 525 Query: 410 SRLGIEQAESLLLP-----------SPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRP 458 GI+ LL P SPF+YS+ A+L + LP + + + A+ R Sbjct: 526 RMTGID----LLQPQNRRVMEVSKLSPFNYSQNAILYIPEELPFPD-IHDEKYIEAISRE 580 Query: 459 IIE---ANNGRCFMLCTSHAMM-RDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNAL 514 II A G +L +S+ +M R E + + P+ + + + ++++F +GN + Sbjct: 581 IIHLICATFGHTLILFSSYWLMERIFYEVKQEIQSFPLFIM-KRGRMDMIEKFRRSGNGV 639 Query: 515 LVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL---KARMEDCRLRGGDPFDEVQLP 571 L A+ S EG+D+ GD LS VII KLPF P P+L + + +D E+ P Sbjct: 640 LFASDSAGEGIDLPGDILSSVIIVKLPFPVP-SPILEYERTKYDDF----SQYVKEIITP 694 Query: 572 DAVITLKQGVGRLIRDADDRGVLVICDNRL-VMRPYGATFLASLPPAPRTRDIARAVRFL 630 +I L+Q GR IR D V I D+R+ + Y L +LP P T I RF+ Sbjct: 695 GMIIKLRQWFGRGIRRETDTAVFSILDSRVGIHGRYRDDVLKALPDMPVTGRIEEIRRFI 754 Query: 631 A 631 A Sbjct: 755 A 755 >UniRef50_D1ABA6 Helicase c2 n=4 Tax=Actinomycetales RepID=D1ABA6_THECD Length = 844 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 111/291 (38%), Positives = 152/291 (52%), Gaps = 33/291 (11%) Query: 13 KAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR----AKKKVII 68 KAI G + R Q +MA AV +AI G+ L +AGTGTGK+ AYL PA+R A V++ Sbjct: 24 KAIGGTE-RPGQVRMAEAVARAIATGEHLAAQAGTGTGKSLAYLVPAIRHAVAADTTVVV 82 Query: 69 STGSKALQDQLYSRDLPTVSKALK----YTGNVALLKGRSNYLCLERLEQQALAGGDLP- 123 ST + ALQ QL RDLP +++AL+ A+LKGR NYLCL R+ A D P Sbjct: 83 STATIALQRQLVDRDLPRLAEALRPLLGQEPRFAILKGRGNYLCLHRVHTGAP---DEPE 139 Query: 124 ------VQILS----DVILLRSWSNQTVDGDISTCV-SVAEDSQAWPLVTSTNDNCLGSD 172 Q LS V L W+ QTV GD V V+E QAW V+ + CLG+ Sbjct: 140 DAALFDPQQLSALGRQVKRLHEWAGQTVTGDRDELVPGVSE--QAWRQVSVSARECLGAQ 197 Query: 173 -CPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLP 231 CP + CF +AR +A A +VV NH L D + +++PE DV+I DEAH+L Sbjct: 198 RCPHGESCFAEQARAEAGQAHIVVTNHALLAIDALEGR----QVLPEHDVVIVDEAHELV 253 Query: 232 DIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDF 282 D + +LS A+ + D +L++ A++LA +D Sbjct: 254 DRVTAAGSGALSGPAAETAARRCGRLIEEGVAD--RLKEAAEKLAALLEDL 302 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 79/193 (40%), Positives = 106/193 (54%) Query: 424 SPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQ 483 SPFD+++ +L V R+LPQ + G + +IEA GR L +S R AE+ Sbjct: 628 SPFDHAKAGILYVARHLPQPGRDGLPEAYLTEIAELIEAAGGRTLGLFSSMRAARQAAEE 687 Query: 484 FRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFT 543 R + P+L QGE + L+++F L T S W+GVDV G +L LVI+D++PF Sbjct: 688 LRGRLGHPLLCQGEDATSLLVKRFAEEERTCLFGTLSLWQGVDVPGPSLQLVIMDRIPFP 747 Query: 544 SPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 PDDP+ AR RGG+ F V A + L QG GRL+R A DRGV+ I D RL Sbjct: 748 RPDDPIASARQRAVAARGGNGFMAVAATQAALLLAQGAGRLLRSATDRGVVAILDPRLAT 807 Query: 604 RPYGATFLASLPP 616 YG +SLPP Sbjct: 808 ARYGGFLRSSLPP 820 >UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=11 Tax=Bacilli RepID=DING_STAEQ Length = 902 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 158/647 (24%), Positives = 278/647 (42%), Gaps = 79/647 (12%) Query: 21 REPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----LRAKKKVIISTGSKALQ 76 R Q +A + + ++EA G+GK+ AYL A + + V+IST +K LQ Sbjct: 252 RPQQLYLAEIILDQLMHSDKAMIEAPLGSGKSLAYLLAATMYNIETGRHVMISTNTKLLQ 311 Query: 77 DQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG--GDLPVQILSDVILLR 134 QL +D+P ++ L + N +L+K +++Y+ L L Q L + V IL +L+ Sbjct: 312 SQLLEKDIPLLNDVLDFKINASLIKSKNDYISL-GLISQILKDDTNNYEVSILKMQLLI- 369 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC-FVVKARKKAMDADV 193 W +T GDI +++ + + D + + P+ D + ++ A + + Sbjct: 370 -WITETNTGDIQE-LNLKGGQKMYV------DQKIETYVPVRHDIHYYNYIKRNAQNIQI 421 Query: 194 VVVNH-HLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAK 252 + NH HL +D E+ +L + I DEAH+LPD A Q + D+ Sbjct: 422 GITNHAHLIHSD---SENTIYQLFDDC---IIDEAHRLPDYA---LNQVTNDLNYSDVKY 472 Query: 253 DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEP---GYRGNLRELL-ANPQIQRAF 308 + + + E ++L K D+L Q +L + G + N+ EL N Q+ Sbjct: 473 QLGLIGKNE---NEKLLKAVDKLEQQRILEKLDIAPIDVFGLKININELHDLNEQLFTTI 529 Query: 309 L-------LLDDTLELCYDVAKLSLGR-----SALLDAAFERATLYR-TRLKRLKEINQP 355 + DD + + V G A++D + ++ K +K + + Sbjct: 530 YNIIQTSDVYDDDIHKYHYVYDFETGEILKDLRAIIDKLNKTIEIFNGMNHKTIKSVRKQ 589 Query: 356 ------GYSYWYECTSRHFT---------------LALTPLSVADKFKELMAQKPGSWIF 394 + + H T L + V D + + +K S F Sbjct: 590 LLYLHDKFKLIEQSIKDHHTSFISIKNLAQKSTIRLLVKDYDVKDILTKQVLEKFKSLTF 649 Query: 395 TSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLA 453 S TL+ N F + + + + +P S + V ++ N +A Sbjct: 650 ISGTLTFNHSFKAFQNWFNEDIDFNTFEISTPLTSSNHTNVFVPNDVETYNYKNLDDYVA 709 Query: 454 AMLRPIIE---ANNGRCFMLCTSHAMM---RDLAEQFRATMTLPVLLQGETSKGQLLQQF 507 +++ I+E +C +L TS+ MM +DL + +L Q + +++QQF Sbjct: 710 SIVDYIVEYITVTQSKCLVLFTSYKMMHMVQDLLNELPELEDYVILTQQQNQNYKIVQQF 769 Query: 508 VSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDE 567 + ++L+ TS+F+EG D + + L V+I KLPF + + +K + D F + Sbjct: 770 NNFDKSILLGTSTFFEGFDFQANGLKCVMIAKLPFMNKHN--IKYWLMDSEFTS--TFKD 825 Query: 568 VQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASL 614 LPDAV +QG+GRLIR DD+G++V D+RLV Y + F SL Sbjct: 826 YVLPDAVTRFRQGLGRLIRHEDDKGLIVSFDDRLVNSTYKSFFAQSL 872 >UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBP3_WEIPA Length = 970 Score = 142 bits (358), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 165/651 (25%), Positives = 269/651 (41%), Gaps = 96/651 (14%) Query: 41 LVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGN 96 + EA TG GKT +L P + +KKVI++ + LQ Q+ + L + Sbjct: 312 FIAEAPTGMGKTLGFLLPYAYLTNQNQKKVIVTEPTITLQTQVTETVNTVLHDILPFEVR 371 Query: 97 VALLKGRSNYLCLERLEQQ-ALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDS 155 LKGR YL L+ ++ + G +Q + IL+ W +T+ GD + Sbjct: 372 AVSLKGRHQYLNLQSFKRSLQIDEGTTSLQFIKAQILV--WLTETMRGDFDELHLMNAQQ 429 Query: 156 QAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGE- 214 + ++ +N GS P Y F + A +A ++VNH +LA+ E G E Sbjct: 430 KFIAKLSQNANNPAGS--PFYGYEFFERQYVLAQNAQFLIVNHS-YLAEYA-NELGTSEN 485 Query: 215 ----LIPEA----DVMIFDEAHQLP------------------------DIASQYFGQSL 242 +I EA D ++ HQLP DI FG + Sbjct: 486 KPYLVIDEAQNLPDAVLNQSRHQLPIQTWLARVQTAINLILQDAKPAVGDILRNIFGGNQ 545 Query: 243 SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANP 302 +LL + +++ + QLQ R F L P +G LAN Sbjct: 546 LKNKLLRALEMLSV-------EIPQLQVSLYR------RFLLNQKAPATQGTYEIALANN 592 Query: 303 QIQRAFL---------------LLDDTLELCYDVA----KLSLGRSALLDAAFER----A 339 + ++ L D EL + SLG L A F R Sbjct: 593 DFAQFWIDQSNHVQSIHTGASDLEDALQELLTQFSDTKGAFSLGERQQL-ADFRRLLDNI 651 Query: 340 TLYRTRLKRLKE--INQPGYS-YWYECTSRH----FTLALTPLSVADKFKELMAQKPGSW 392 + Y +L ++ ++ P S +W T H L+ L + FKE + + Sbjct: 652 SQYEKQLTTFQQDLVDFPEASIFWLTETQSHDSSNLQLSGGLLHTLNYFKEKVYPHFMAP 711 Query: 393 IFTSATLSVNDDLHHFTSRLGIEQAESLL--LPSPFDYSRQALLCVLRNLPQTNQPGSAR 450 ATL + + RL +++ + + P FD+ QA L +++N P + + Sbjct: 712 TVIGATLFTSTKSGYLYDRLNLDKETATVRHYPDIFDFKNQADLIMVKNAPLPTEKDFSN 771 Query: 451 QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM-----TLPVLLQGET-SKGQLL 504 LA L + + N +L S ++ + ++ +L +L QG T ++G++ Sbjct: 772 YLAKQLVDVTTSVNQNTLVLFNSLDTIQQVYNHIQSNKKFQQSSLTLLAQGVTGTRGKIK 831 Query: 505 QQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDP 564 ++ S +++ +SFWEG+D+ GD L L+II +LPF P+ L KA G P Sbjct: 832 KRMQSEDGLVVLGAASFWEGIDLPGDQLRLLIIARLPFDRPNTVLQKAEEAVINSEGKQP 891 Query: 565 FDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 F + LP AV+ L+QG+GRLIR D G ++I D R++ + YG T +P Sbjct: 892 FYQSTLPKAVLRLRQGIGRLIRTPTDYGAVIIYDARILTKSYGKTLRKMMP 942 >UniRef50_A6BD56 Putative uncharacterized protein n=7 Tax=Clostridiales RepID=A6BD56_9FIRM Length = 658 Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 165/663 (24%), Positives = 274/663 (41%), Gaps = 91/663 (13%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK------------ 64 G RE Q ++ + A+ K + + +AG G GKTYAYL + +K Sbjct: 27 GLHVREEQIRLCHEMLDALMKNEITLCDAGVGIGKTYAYLTACILMRKYSVLHSGYSGCD 86 Query: 65 --KVIISTGSKALQDQLYSRDLPTVSKAL------KYTGNVALLKGRSNYLCLERLEQQA 116 V++ST S ALQ + +P +S L + + KG+ +++C RL Q+ Sbjct: 87 RRSVVVSTSSIALQKAIIEEYVPFLSDVLLKADLLQGELKAVVRKGKEHFVCDYRLAQRL 146 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 A D L N +D SV S + C +CP Sbjct: 147 EAVRDKNKNQAQMEALKSLRHNFDLD-------SVHNLSGFDRRLVCVPKFC-PRECPGK 198 Query: 177 KDCFVVKARKKAMDADVV--VVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIA 234 C K + D+ + NH+ LAD + + +G+ L+ + ++ DEAH+LP+ A Sbjct: 199 AGCRYQKHLDISRKEDIFLQICNHNYLLADAMHRANGYRPLLADYRALVVDEAHKLPEAA 258 Query: 235 SQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN 294 SQ +G+S+ + ++A + E K T RL + ++++ R + Sbjct: 259 SQMYGRSIGREDVQEIAYFLV----REHKGTD-----GKRLLEGVSALQMEI-----RKH 304 Query: 295 LRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRL-------- 346 ++ + + + +F G L ER L RL Sbjct: 305 RKDGIEDMAGKESFYF--------------PPGAGTALAQMQERLQLMIKRLAGNIPYWT 350 Query: 347 -KRLKEI---------NQPGYSYWYECTSR-HFTLALTPLSVADKFKELMAQKPGSWIFT 395 +RL+E+ N Y + + SR H T + + + I T Sbjct: 351 FRRLEEMEELFGWFLKNDKRYILFLQQDSRGHLTFMAVNREIPKYLDTTLWSQGFPAILT 410 Query: 396 SATLSVNDDLHHFTSRLGIEQAESL---LLPSPFDYSRQALLCVLRNLPQTNQPGS---A 449 S TL + G+E+ + + SPF Y LL + +L + + GS A Sbjct: 411 SGTLKAGNGFARTRQMTGLEKETGVRECVAESPFCYQENCLLYIPEHL-KPRKKGSREEA 469 Query: 450 RQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVS 509 QLA +R ++ + G +L TS+ +M ++ + R + P++ S+ ++ +F Sbjct: 470 EQLAGQIRDLVCSTYGHTLVLFTSYTLMGNVQQLLRDQIPFPMVQVWRNSQEEI-ARFKK 528 Query: 510 AGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQ 569 NA+L A S WEGVD GD +S +II KLPF+ P DP+ +A+ E R + Sbjct: 529 MENAVLFAAGSCWEGVDFPGDMVSSLIIVKLPFSVP-DPIHEAQREQYR-SLKSYIQTIV 586 Query: 570 LPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRP-YGATFLASLPP---APRTRDIAR 625 +PD L+QG GR IR D V+ I D+R + Y + L +LP A R ++ Sbjct: 587 VPDMQKKLRQGFGRAIRTEQDTCVVSILDHRATKKGRYRSDVLEALPKCQMAERIEEVED 646 Query: 626 AVR 628 +R Sbjct: 647 FIR 649 >UniRef50_Q1MXU1 ATP-dependent helicase DinG n=1 Tax=Bermanella marisrubri RepID=Q1MXU1_9GAMM Length = 707 Score = 139 bits (350), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 97/279 (34%), Positives = 130/279 (46%), Gaps = 45/279 (16%) Query: 18 FKPREPQRQMAVAVTQA------------IEKGQPLVVEAGTGTGKTYAYLAPAL----R 61 KPR Q+QM A+ + + Q VVEAGTGTGKT AYL + Sbjct: 23 LKPRYGQKQMIAAIAKTLGGIQSDDEGKRVNDKQVCVVEAGTGTGKTLAYLLSTIPLAED 82 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQ------ 115 KK+I+ST + ALQ+QL S+DLP V+K AL KGR YLC+ +L+Q+ Sbjct: 83 LNKKIIVSTATVALQEQLISKDLPDVAKYSGLEFRYALAKGRGRYLCVHKLDQELKDQRM 142 Query: 116 ------ALAGGDLP------VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTS 163 G D Q D L W DGD E + W +VT+ Sbjct: 143 QDASMDMFGGADATDDQKGLFQKFLDEFLTGRW-----DGDRDNWPETIE-YEDWSMVTA 196 Query: 164 TNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPE--ADV 221 T+ C CP + C ARK DA+V+V NH L +AD+ + G G ++PE + Sbjct: 197 THRECSNRRCPHFNACPFFTARKSLEDAEVIVANHDLVMADISL---GGGAILPEPAQSI 253 Query: 222 MIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRT 260 +FDE H LPD A +F + Q +L K I+ A T Sbjct: 254 YVFDEGHHLPDKAISHFAGQVKLNQEENLLKQISKAVDT 292 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 119/236 (50%), Gaps = 11/236 (4%) Query: 393 IFTSATLSVNDDLHHFTSRLGIEQAESL-LLPSPFDYSRQALLCVLRNLPQTNQPGSARQ 451 + TSATL+ + GI + + SPFDY + V + +PG Sbjct: 471 VVTSATLTALGRFDRLRMKAGIAKDNYFERIQSPFDYPNLGEILVPND---AVEPGHGDD 527 Query: 452 LAAMLRPIIEAN---NGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQF- 507 + ++E++ N +L TS +M D+ Q ++ V+ Q E SK ++L+Q Sbjct: 528 YTQQVSDLLESHLDENESTLVLFTSRRLMNDVKFQLPFDVSDHVITQDEFSKQEVLKQHR 587 Query: 508 --VSAG-NALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDP 564 + AG + L +SF EG+D+ GD L VII +LPF+ PDDP+ E +G +P Sbjct: 588 DKIEAGLPSYLFGLASFAEGIDLPGDLLQHVIIVRLPFSVPDDPVDATLAEWLESKGRNP 647 Query: 565 FDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 F E+ +PDA + L Q VGRLIR D G + + D RLV + YG+ L LPP R Sbjct: 648 FMEISVPDASVRLIQAVGRLIRTEQDTGRITVLDKRLVSKRYGSLLLDGLPPFRRN 703 >UniRef50_A3EQ06 Probable ATP-dependent DNA helicase n=2 Tax=Leptospirillum sp. Group II RepID=A3EQ06_9BACT Length = 738 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 95/268 (35%), Positives = 140/268 (52%), Gaps = 11/268 (4%) Query: 358 SYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA 417 + W E + L +P+ A +E++ ++ + TSATL F+SR G+ Sbjct: 459 TMWKESGTFSHRLEASPVWPATLLEEVLWRRVSACCLTSATLMSLGSFKSFSSRCGLSML 518 Query: 418 ES---LLLPSPFDYSRQALLC--VLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCT 472 L L SPF RQ +L V+R+ P T+ R++ L P + + G +L + Sbjct: 519 TGVSFLSLDSPFPLDRQGVLSLPVMRSDP-TDFESHTREIVESL-PAVLSPTGGALVLFS 576 Query: 473 SHAMMRDLAEQFRATMTLPVLLQGETSKGQLL---QQFVSAGNA-LLVATSSFWEGVDVR 528 S M + + VL+QGE S+ +L +Q V AG A +L SSF EG+D++ Sbjct: 577 SRRQMEAVRKGLSPEWQNRVLVQGERSRKDILALHEQRVRAGEASVLFGLSSFSEGLDLK 636 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 GD + V+I K+PF P +P+ + E R RGGDPF E+ LP+A + L Q GRLIR Sbjct: 637 GDLCTHVVIAKIPFPVPTEPVEETLSEWIRSRGGDPFREIALPEAGLRLVQAAGRLIRSE 696 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPP 616 DRG++ I D RL+ + YG L SLPP Sbjct: 697 TDRGIVTIFDKRLLEKNYGVHLLRSLPP 724 Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 133/261 (50%), Gaps = 36/261 (13%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAI----EKGQPL-------VVEAGTGTGKTYAYLAP 58 +L++ +PGF R QR M V + E+G+P V++ TGTGKT AYL Sbjct: 32 RLSRTLPGFAARPGQRAMIAEVARTFSRCREEGEPSKDGQNLSVIQGPTGTGKTMAYLLA 91 Query: 59 AL---RAKKK-VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQ 114 + R++KK +++ST + +LQ+QL ++D+P +++ L L KGR YLC E+ Sbjct: 92 GIVLARSRKKTLLVSTATVSLQEQLVTKDIPQLARVLDNPPVYELAKGRGRYLC----ER 147 Query: 115 QALAGGDL----------PVQILSDVI-LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTS 163 L+ DL P D++ LR + DGD DS W L+ + Sbjct: 148 NLLSLTDLQAGNAFWKHPPSASELDLLDRLRGDFPDSWDGDRDHLPVSVPDS-LWSLIQN 206 Query: 164 TNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADV 221 +C G CP+Y C ++ AD+VV NH L L+D+V+ G G L+ PE + Sbjct: 207 QGTSCTGKRCPLYSRCPFFLKKEAFSRADIVVANHDLVLSDLVL---GGGILLPSPEKSL 263 Query: 222 MIFDEAHQLPDIASQYFGQSL 242 ++FDEAH LP + +F +SL Sbjct: 264 LVFDEAHHLPGKSLSHFRESL 284 >UniRef50_A0LUZ2 Helicase c2 n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LUZ2_ACIC1 Length = 710 Score = 138 bits (347), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 82/225 (36%), Positives = 119/225 (52%), Gaps = 1/225 (0%) Query: 393 IFTSATLSVNDDLHHFTSRLGIEQ-AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQ 451 + TSATL+V H RLG+ +L + SPF Y RQ +L V +LP + G + Sbjct: 457 VLTSATLTVGGSFHPMIERLGLHHDVRTLDVGSPFSYQRQGILYVASHLPPPGRDGISAD 516 Query: 452 LAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAG 511 L ++ A GR L +S ++ A R + PVL QG+ + +L+++F + Sbjct: 517 ALEELVALMTAAGGRTLGLFSSMRAAQEAAAFARERVDFPVLCQGDDATAELIRRFAADA 576 Query: 512 NALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLP 571 L T S W+GVDV G LV++D++PF PDDPL+ AR + GG+ F +V Sbjct: 577 QTCLFGTLSLWQGVDVPGAACQLVVVDRIPFPRPDDPLMAARQQAVTEAGGNGFLQVAAG 636 Query: 572 DAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPP 616 A + L QG GRL+R DRGV+ + D+RL Y +SLPP Sbjct: 637 HAALLLAQGCGRLLRSPHDRGVVAVLDSRLATARYARFLRSSLPP 681 Score = 69.3 bits (168), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 8/106 (7%) Query: 129 DVILLRSWSNQTVDGDISTCV-SVAEDSQAWPLVTSTNDNCLG-SDCPMYKDCFVVKARK 186 +V + SW+N+T GD V V+E +AW T C+G S CP CF AR Sbjct: 211 EVARITSWANETSTGDRDELVPGVSE--RAWGQFAVTARECVGASRCPHGSRCFSELARI 268 Query: 187 KAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPD 232 +A AD+VV NH + D++ G ++PE DV+I DEAH+L D Sbjct: 269 RAGQADIVVTNHAMLAVDVL----GDAPVLPEHDVVIVDEAHELVD 310 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 39/86 (45%), Positives = 50/86 (58%), Gaps = 14/86 (16%) Query: 41 LVVEAGTGTGKTYAYLAPAL----------RAKKKVIISTGSKALQDQLYSRDLP----T 86 L+V+AGTGTGK+ AYL PA+ ++ VI++T + ALQ QL RDLP Sbjct: 49 LLVQAGTGTGKSLAYLVPAMWHVTARDDADDERRPVIVATATLALQRQLVERDLPRLVEV 108 Query: 87 VSKALKYTGNVALLKGRSNYLCLERL 112 +S L A+LKGR NYLC RL Sbjct: 109 LSPLLPRRPTFAILKGRRNYLCRLRL 134 >UniRef50_C0ABZ5 Helicase C2 n=2 Tax=Verrucomicrobia RepID=C0ABZ5_9BACT Length = 163 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 65/126 (51%), Positives = 89/126 (70%), Gaps = 1/126 (0%) Query: 491 PVLLQGE-TSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPL 549 P L+QG S+ +L Q+F AGN +L T SFW G+DV G +LS VII +LPF P P+ Sbjct: 18 PFLMQGPGLSRTELAQRFRDAGNGILFGTDSFWTGIDVPGPSLSQVIITRLPFEVPTHPV 77 Query: 550 LKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGAT 609 L+AR E R RGG+PF+E+ LP+A++T +QGVGRLIR A DRG++ + D R++ + YG Sbjct: 78 LEARTEWVRERGGNPFNEITLPEALMTFRQGVGRLIRSARDRGIITLLDPRILHKTYGRL 137 Query: 610 FLASLP 615 F+ SLP Sbjct: 138 FIESLP 143 >UniRef50_UPI0001699456 Helicase c2 n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001699456 Length = 198 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 66/113 (58%), Positives = 84/113 (74%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 +++ F PDG LA+ I GF R Q++MA AV +E+G L+ EAGTGTGKT+AYL PAL Sbjct: 4 LSEIFGPDGWLARCIDGFSQRPQQQEMAEAVAAVLERGGTLICEAGTGTGKTFAYLVPAL 63 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE 113 + +KVI+STG+K LQDQL+ RDLP V K+L VALLKGR+NYLCL R+E Sbjct: 64 MSGRKVIVSTGTKNLQDQLFHRDLPLVRKSLAVPFAVALLKGRANYLCLHRME 116 >UniRef50_A1U100 Helicase c2 n=3 Tax=Marinobacter RepID=A1U100_MARAV Length = 725 Score = 135 bits (339), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 95/271 (35%), Positives = 134/271 (49%), Gaps = 30/271 (11%) Query: 42 VVEAGTGTGKTYAYLAPALRAKK----KVIISTGSKALQDQLYSRDLPTVSKALKYTGNV 97 VVEAGTGTGKT AYL A+ K ++IST + ALQDQ+ +DLP + K K + Sbjct: 59 VVEAGTGTGKTLAYLIAAIPVAKALGKTLVISTATVALQDQIVLKDLPDLRKHSKLDFSW 118 Query: 98 ALLKGRSNYLCLERLEQQALAGGD-----LPVQILSDVI------------LLRSWSNQT 140 L KGR YLC+ RLE + G +P+ +L + +L S+ ++ Sbjct: 119 TLAKGRGRYLCMSRLEARLHDEGHGDSDTMPLFLLDQPVDDEARSRATFENMLASYGSRD 178 Query: 141 VDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHL 200 DGD D + W VT+ + C C + C ARK DADVVV NH L Sbjct: 179 WDGDRDHWPEQIPD-EIWRQVTTDHRQCTNRHCAYFDSCAFFDARKDLDDADVVVANHDL 237 Query: 201 FLADMVVKESGFGELIPEAD--VMIFDEAHQLPDIASQYFGQSL---SSRQLLDLAKDIT 255 LAD+ + G G ++PE + + IFDEAH LPD A +F S+ S+RQ L Sbjct: 238 VLADLAL---GGGAILPEPENALFIFDEAHHLPDKALNHFAASVPLNSTRQWLKQLSQAL 294 Query: 256 IAYRTELKDTQQLQKCADRLAQSAQDFRLQL 286 + + L Q K ++++ + +D L L Sbjct: 295 VKMQPWLPAGSQAAKAVEKISTAGRDLDLAL 325 Score = 118 bits (296), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 123/244 (50%), Gaps = 7/244 (2%) Query: 381 FKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYSRQALLCVLRN 439 + L ++ G+ + TSATL+ SR G+ E + L++PS F Y+ A + V Sbjct: 480 YSRLWSRAYGA-VLTSATLTALGRFDRLRSRAGLPEASRYLVVPSSFRYAEMATVEVPAM 538 Query: 440 LPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETS 499 + G A L L P + A +L TS M+ + + +L Q + + Sbjct: 539 VAMPTDDGFADALVKRL-PELWAGEKATLVLFTSRRQMQQVRDALAPEYPELILTQDDMA 597 Query: 500 KGQLLQQFVS----AGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARME 555 K ++L+ S ++L +SF EG+D+ G L V+I +LPF+ PDDP+ + E Sbjct: 598 KNEVLRVHCSRVDEGKPSVLFGVASFAEGIDLPGRYLHHVVITRLPFSVPDDPIEASLAE 657 Query: 556 DCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 RGG+PF E+ +PDA + L Q VGRL+R D G + I D R+V R YG L +LP Sbjct: 658 WVTQRGGNPFMEITVPDASVKLVQAVGRLLRTEQDTGRVTILDRRIVARRYGQLLLDALP 717 Query: 616 PAPR 619 P R Sbjct: 718 PFRR 721 >UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C2ES78_9LACO Length = 960 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 84/253 (33%), Positives = 136/253 (53%), Gaps = 15/253 (5%) Query: 393 IFTSATLSVNDDLHHFTSRLGIEQAESLL--LPSPFDYSRQALLCVLRNLP---QTNQPG 447 +F ATL + ++ +L +E+ +L SPF+Y+ +A L V ++ P QTN Sbjct: 699 LFVGATLFTSSRSNYLYEQLDLEKDRTLQKRFASPFNYAERAELLVAKDAPIPNQTNNEE 758 Query: 448 SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP---VLLQGETSKGQ-L 503 R LA + + + N + +L S + + Q + T +L QG T + + L Sbjct: 759 YTRYLAQTIYQLCKNNQCQTMILFNSLVTIEQVYSQLKETDLFDQRDILAQGITGRREKL 818 Query: 504 LQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGD 563 L+QF S +++L+ SSFWEG+D+ +L L+II +LPF SP++ + +A + G + Sbjct: 819 LKQFASGTSSILLGASSFWEGIDLPKSSLELLIITRLPFDSPNEIMTRAHNNLLKREGKN 878 Query: 564 PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPP------A 617 PF LP A + L+QG+GRL+R +D GV VI D+R+ R YG++ L +LP Sbjct: 879 PFYHSALPKATMRLQQGIGRLLRTPNDFGVGVILDSRISTRRYGSSILKNLPKDLPIKEL 938 Query: 618 PRTRDIARAVRFL 630 P T + A +FL Sbjct: 939 PTTELVESAKKFL 951 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 67/239 (28%), Positives = 115/239 (48%), Gaps = 21/239 (8%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP---ALRAKKKVIISTGSKA 74 F+P + + ++ ++ + ++VEAGTGTGKT YL P A KK++IST + Sbjct: 275 FRPTQSKMMNSIYNNYTHDEPKSMIVEAGTGTGKTLGYLLPLAYAAYPDKKIVISTATNL 334 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQ-ALAGGDLPVQILSDVILL 133 LQ Q+ R + ++ L + N ++KG S+YL L + ++ +Q++ IL+ Sbjct: 335 LQQQIAQRTMKQLNHLLPFELNGVVIKGNSHYLDLAKFVHSLSIVEDSDYIQLIKAKILV 394 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADV 193 W +T GD+ A+ S + + L D Y D F+++ +K+ A+V Sbjct: 395 --WLLKTTSGDLDELNLNAQRSPYFAEIRHQGVKTLREDNEFYNDDFLIRRQKQLHTANV 452 Query: 194 VVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL--SSRQLLDL 250 ++ NH +A +E G G P ++ DEA Q+ +S+ SRQ LD Sbjct: 453 IITNHAYLVAH--AQELGDGTRRP---YLVVDEA--------QHLSESILRRSRQTLDF 498 >UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, putative n=11 Tax=Lactobacillales RepID=A5VK04_LACRD Length = 954 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 126/232 (54%), Gaps = 9/232 (3%) Query: 393 IFTSATLSVNDDLHHFTSRLGIEQAESLL--LPSPFDYSRQALLCVLRNLP---QTNQPG 447 +F ATL + + +L +E+ +L SP++Y + A L + + P N Sbjct: 693 LFVGATLFTSPRSPYLYHQLDLERNNTLTRRFASPYNYKQNAKLLIAEDAPVPSAQNNSD 752 Query: 448 SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP---VLLQGET-SKGQL 503 + L+ + + + + + +L S M+ + Q R T +L QG T ++ ++ Sbjct: 753 YIKYLSDTIYQLTKNADYQTMILFNSLVMIEQIYSQLRETDLFDQRDILAQGITGNRDKI 812 Query: 504 LQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGD 563 L+QF N++L+ SSFWEG+D+ L L+II +LPF SPD+ + +A + + +G + Sbjct: 813 LKQFSGGKNSILLGASSFWEGIDLPESALELLIITRLPFDSPDEIMNRAHNKLLQQQGKN 872 Query: 564 PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 PF +LP A + L+QG+GRL+R DD GV V+ D RL R YG T L+SLP Sbjct: 873 PFYHSELPKATMRLRQGIGRLLRTEDDHGVAVVLDPRLQTRRYGKTILSSLP 924 Score = 82.8 bits (203), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 19/221 (8%) Query: 21 REPQRQMAVAVTQAIEKGQP--LVVEAGTGTGKTYAYLAP---ALRAKKKVIISTGSKAL 75 R Q +M ++ +P ++VEAGTG GKT YL P KK+++ST + L Sbjct: 270 RPVQAKMMNSIYNNYTHDEPKNMIVEAGTGVGKTLGYLFPLSYVAYPDKKIVVSTATNIL 329 Query: 76 QDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP-VQILSDVILLR 134 Q Q+ + ++K L + N ++KG ++Y+ + R D VQ+L IL+ Sbjct: 330 QQQIIDTSIAQLNKVLPFKMNSVIIKGNAHYIDIARFVHSLSVIEDSKLVQLLKAKILV- 388 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM---YKDCFVVKARKKAMDA 191 W T GD+ + +SQ P T + S P+ Y D F+V+ K+ A Sbjct: 389 -WLLSTQSGDLD---ELNLNSQQSPYFTEIRHQGIRSLNPVNAFYHDDFLVRREKRLHQA 444 Query: 192 DVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPD 232 D+++ NH +A +E G G P ++ DEA L + Sbjct: 445 DIIITNHAYLVAH--AQELGDGTRRP---YLVIDEAQHLSE 480 >UniRef50_A4BE15 ATP-dependent helicase, DinG family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BE15_9GAMM Length = 704 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 80/235 (34%), Positives = 117/235 (49%), Gaps = 38/235 (16%) Query: 42 VVEAGTGTGKTYAYLAPAL----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNV 97 V+EAGTGTGKT Y A+ KK++I+T + ALQ+Q+ S+DLP + N Sbjct: 59 VIEAGTGTGKTIGYALSAIPIAQSLDKKLVIATATVALQEQVVSKDLPDILSNTDLQFNA 118 Query: 98 ALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAE---- 153 L KGR YLC +LEQ +Q S ++ S +T++ D +T E Sbjct: 119 VLAKGRGRYLCTHKLEQL--------IQFYSGTVVAMSLFEETMEADEATLNQYNEMMTS 170 Query: 154 -----------------DSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVV 196 D W +TS++ CL CP Y++C +ARK DADV++ Sbjct: 171 FGSGEWSGDRDQWPDKLDDSLWRTLTSSHRECLNRRCPHYQNCPFFEARKALDDADVIIA 230 Query: 197 NHHLFLADMVVKESGFGELI--PEADVMIFDEAHQLPDIASQYFGQSLSSRQLLD 249 NH L LAD+ + G G ++ PE + +FDE H LPD A +F ++ + LL+ Sbjct: 231 NHDLVLADLSL---GGGAILPAPEDTLYVFDEGHHLPDKALMHFANQMTVKYLLN 282 Score = 110 bits (275), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 126/261 (48%), Gaps = 21/261 (8%) Query: 368 FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL-LPSPF 426 +L +P++ K + + I TSATL+V F ++ GI A LL +PSPF Sbjct: 445 LSLNTSPVTANAVLKAYLWNRCCGAIVTSATLTVEARFDRFLAQAGISDAAHLLQVPSPF 504 Query: 427 DYSRQALLCVLRNLPQTNQPGSARQ-----LAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 DY V +P+ G AR+ + ++ + G +L +S A M ++ Sbjct: 505 DYPN----LVTAIVPEFAVEGGAREAHSESIVRLIESQLPKETGN-LILFSSRAQMYEVY 559 Query: 482 EQFRATMTLPVLLQGETSKGQLL----QQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 E + LQ + K L+ ++ + L +S EGVD+ G+ L+ ++I Sbjct: 560 EALPVDWQDVITLQDDLPKTALIAHHRERLEEGAGSTLFGLASLAEGVDLPGNYLTHLVI 619 Query: 538 DKLPFTSPDDPL---LKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 KLPF PDDP+ L +E +L +PF V LP A I + Q GRLIR +DRG + Sbjct: 620 AKLPFGVPDDPISSTLSLWLESKQL---NPFQVVTLPAATIRMVQACGRLIRHENDRGTI 676 Query: 595 VICDNRLVMRPYGATFLASLP 615 + D RLV + YG T + SLP Sbjct: 677 WVMDRRLVTKRYGKTIINSLP 697 >UniRef50_Q58352 Probable ATP-dependent helicase MJ0942 n=10 Tax=Methanococcales RepID=Y942_METJA Length = 651 Score = 129 bits (325), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 175/674 (25%), Positives = 282/674 (41%), Gaps = 129/674 (19%) Query: 9 GQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---RAKKK 65 G + + P K REPQ++M + + + I+ + L+VEA TG GKT YL PAL +K+ Sbjct: 5 GYIKEKFPYPKVREPQKRMMLKIYECIKNKRNLIVEAPTGVGKTLGYLIPALYFAERRKR 64 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ 125 V+I T + Q ++Y DL ++ LK VA L G+SN++C + + L Q Sbjct: 65 VLILTETIDQQVRIYE-DLSSLRHNLK----VAFLMGKSNFIC----KSKGGKANRLYCQ 115 Query: 126 ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKAR 185 L+ L R I C ++ P+ + D + CP Y C KA+ Sbjct: 116 -LNKKCLYRPNKRP-----ICYC-----GTKKQPV--NLGDKVIYY-CP-YCTCEYQKAK 160 Query: 186 KKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLP-------------- 231 +++ AD+VV+N+ +F KE E + D++I DEAH+L Sbjct: 161 IESILADIVVMNNSMF---YYAKEDI--EAKRDIDIIICDEAHKLESSIRNTSTIIINPE 215 Query: 232 ----------------------DIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQ 269 DI + F + + + L +I I T + D + L Sbjct: 216 LPINRLKYMAIHYAPNILKKRLDIGDENFWEIIE-KYLTSRGINIDICKETIIFDGENL- 273 Query: 270 KCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRS 329 S+ ++ +L G L I+ L ++ E+ + + + Sbjct: 274 --------SSWKYKTELAVLG--AILDAYYQINNIKNKILRFNENEEIDREELRFEIDNK 323 Query: 330 ALLDAAFERATLYRTRL------------KRLKEINQPGYSYWYECTSRHFTLALTPLSV 377 AL+ A E +++ +L K L+ IN+ Y +L P+ V Sbjct: 324 ALI--AIELDFIHKKKLSDLYLLEFIENIKNLRYINEN-----YVVYRSGNSLLCEPVFV 376 Query: 378 ADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVL 437 + KEL I SAT+ N +H + G+++AE L+L SPF +R+ ++ + Sbjct: 377 SSHLKELYGN--AVVIHCSATIG-NLKMHALKT--GLDKAEFLILESPFPKNRKKIIALK 431 Query: 438 RNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHA--------MMRDLAEQFRATMT 489 + + + L I+EA NG +L S + R++ + Sbjct: 432 DGVDMKYERKDREKANKNLLKILEAINGNSLVLFKSFEDLDSFYKYLKREITKTNIKNKN 491 Query: 490 LPVLLQGETSK--GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 + V QG K +L ++F G +L+AT F EGVD+ G+ L V+ID LPF P Sbjct: 492 IHVYEQGMDGKEAKELKERFEKIG-GILLATGRFAEGVDIPGEALVGVVIDSLPFPVPTP 550 Query: 548 PLLKARM---EDCRLRG-----GDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 +L+ + E ++RG F TL Q +GRLIR +D GV+VI D Sbjct: 551 LILREQKILEERFKIRGVRDAHWRAFLMTSFDRMARTLVQMIGRLIRTENDYGVVVIQDK 610 Query: 600 RL------VMRPYG 607 R VMR G Sbjct: 611 RFADWVGRVMREKG 624 >UniRef50_C1D0X6 Putative ATP-dependent DNA helicase n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0X6_DEIDV Length = 1683 Score = 129 bits (323), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 187/718 (26%), Positives = 287/718 (39%), Gaps = 134/718 (18%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---RAKKKV 66 Q++ +P PR Q +MA +V+ + LVVEA TGTGKT AYL PAL K V Sbjct: 237 QVSDMLP--SPRPGQLKMAESVSATLSGPGRLVVEAPTGTGKTRAYLYPALLRGEPGKPV 294 Query: 67 IISTGSKALQDQLYSRDLPTVSKALKYTG---NVALLKGRSNYLCLERLE---------- 113 +IST +K LQ+Q+ ++ LK G V LKG+SNY+C ERL+ Sbjct: 295 VISTHTKQLQNQIVKE-----AQHLKDAGFKVRVVALKGQSNYICPERLQLLLTRRFRPD 349 Query: 114 -----------QQALAGGDLPVQILSDV---------ILLRSWSNQTVDGDISTCVSVAE 153 ++ L+ G V+ SDV I+L + + T + A Sbjct: 350 EVPEADQYEANEKDLSAG---VETASDVAEDQRPGRLIMLPGQARAVA---LLTLHAQAG 403 Query: 154 DSQAWP--------------LVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHH 199 + A P +VTST CP C + + ADVVVVNH Sbjct: 404 EYGALPPSALTRSPEYLQAKIVTSTVAKRCRDACPFSTCCSYHRTQALVPQADVVVVNHA 463 Query: 200 LFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYR 259 L L + + G + D ++ DEAH L D A Q + S +L +A++ Sbjct: 464 LLLRNQL---GGLEQENLPFDRVVVDEAHDLQDAAESALRQEIGSDAILSVAREFLRRTH 520 Query: 260 TELKDTQQLQKCADRLAQSA---------------------------QDFRLQLGEP--- 289 E + A R+AQ A Q F +Q G+ Sbjct: 521 GESAGLLPSIEKAARVAQDANLATLSQKAATAFDVLVARVDTWQAALQAFAMQFGQGSEA 580 Query: 290 -GYRGNLRELLANP----QIQRAFLLLDDTLELCYDVAKLSLGRSAL---LDAAFERATL 341 G++ + L + RA L +L+ C RS+ L+A R Sbjct: 581 FGFQAAVDPLPMQSAEWRAVTRASEELTSSLKYCAGFIPSLAQRSSYQMDLEALLARLND 640 Query: 342 YRTRLKRLKEINQPG-YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLS 400 L L + PG + Y ++ PL ++ +EL +K S +FTSATL Sbjct: 641 QIDTLGVLLARSLPGAHVYAVTANGDSASIWAVPLWLSSVLEELW-KKTSSLVFTSATLR 699 Query: 401 VND-----------DLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSA 449 V D F L + ++ ++LP Y + +L +LP + P + Sbjct: 700 VPGTWDAKGSGDVADFGVFERDLALPESSYMVLPPVLPYDKGYVLLT-SHLPLVHHPDFS 758 Query: 450 RQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVS 509 + + ++ + + T++ +R + + V + +Q Sbjct: 759 GLVGQEIDNLVTQTPNQALHIFTANERLRRASRHIKKRHLNSV----RDGTQRTVQDLHG 814 Query: 510 AGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQ 569 G + ++ F +GVD+R L+LV +DK PF P D +L+A+ D ++ + Sbjct: 815 DGEWHALGSAGFLQGVDIR--DLTLVSLDKTPFPIP-DLVLEAQRRDVN-DFETYWNTLY 870 Query: 570 LPDAVITLKQGVGRLIRDADDR-----GVLVICDNRLVMRPYGATFLASLP-PAPRTR 621 LP AV+ QG GRL+R +DR G V+ D RL Y FL +LP PA R Sbjct: 871 LPRAVLKFVQGFGRLVR--NDREGLPAGAFVVWDKRLAFAHYQDRFLGALPIPAGNVR 926 >UniRef50_Q482M5 ATP-dependent helicase DinG n=3 Tax=Gammaproteobacteria RepID=Q482M5_COLP3 Length = 712 Score = 128 bits (322), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 76/259 (29%), Positives = 135/259 (52%), Gaps = 8/259 (3%) Query: 368 FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ---AESLLLPS 424 + L+ +P+ V + ++ + + SATL + HF ++G++ ++ + S Sbjct: 451 YLLSASPIEVGFTLENMLWSQCEGAVLCSATLRALNSFDHFRFQVGLKNNDGSQYQQVDS 510 Query: 425 PFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF 484 PFDY + L + + + + P ++ A L ++ N +L +S+ M +A Sbjct: 511 PFDYQNNSQLVIAKMDNEASAPEFTDEVIAKLPKYLKQGNA-SLVLFSSYWQMNKVALAL 569 Query: 485 RATMTLPVLLQGETSKGQLL----QQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL 540 R L +++QGE S+ Q++ ++ +++ T SF EG+D+ GD L+ +II KL Sbjct: 570 REDHKLEIMVQGELSRQQIIALHKKRCDDNKESIIFGTQSFSEGLDLPGDYLNNLIITKL 629 Query: 541 PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR 600 PF+ P P+ +A+ E +GG+PF + +PD L Q GRL+R+ D GV+ + D R Sbjct: 630 PFSVPTSPVEQAQAEYVTAKGGNPFMTLSVPDTSKKLVQACGRLLRNEMDEGVITLLDKR 689 Query: 601 LVMRPYGATFLASLPPAPR 619 +V + YG L SLPP R Sbjct: 690 VVTKRYGKQLLDSLPPFSR 708 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/279 (30%), Positives = 128/279 (45%), Gaps = 36/279 (12%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAI-----EKGQPLVVEAGTGTGKTYAY----LAPALR 61 + + + F PR+ Q + + + + + + + +EAGTGTGK+ AY + AL Sbjct: 17 IGENLTHFNPRKQQTLLIAEIAKTLAGEYSKDRKIITIEAGTGTGKSLAYSLGAIPLALA 76 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG-G 120 KKV IST + ALQ+QL +DLP + K + L KGR Y+C ++L G G Sbjct: 77 RDKKVCISTATVALQEQLVDKDLPFLKKYAGLNFDFTLAKGRQRYVCRQKLTLAVTTGSG 136 Query: 121 DLPVQI---------LSDVILLRSWSNQTVDGDISTCVSVAEDS---QAWPLVTSTNDNC 168 + P Q D+ L +DG + E W V S +C Sbjct: 137 NEPAQAGFTFAEKPDAKDIRTLNKMHKALLDGSWLGDIDSWETHLPQHIWHQVQSDKHSC 196 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADVMIFDE 226 L + + C KAR+ A V+VVNH L LAD+ E G G+++ PE I DE Sbjct: 197 L-KNLSEHTHCPFHKARETMDQAHVLVVNHSLLLADL---ELGGGKILSPPEDTFYIIDE 252 Query: 227 AHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDT 265 AH LP + + S++ + +I + T+L+DT Sbjct: 253 AHHLPKVTRDFSSASITLKG--------SIEWLTKLRDT 283 >UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N494_SLAHD Length = 986 Score = 128 bits (321), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 86/254 (33%), Positives = 129/254 (50%), Gaps = 21/254 (8%) Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES-----LLLPSPFDYS 429 + + + E + ++ S ++ SAT+S++DD F LG+ +E+ LL S +DY+ Sbjct: 717 VDIGQELDETLYERTQSVVYASATISISDDFQAFNQALGLNASEASRSKECLLGSSYDYN 776 Query: 430 RQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT-- 487 + VL ++P+ P +AR +A + ++ A+ + + T R++ + F A Sbjct: 777 HHMRVFVLNDMPE---PNNARYMARLQDMLLRAHLAQQGSMLTLFTNRREMEQCFDAVNP 833 Query: 488 ------MTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLP 541 + L G + KG L F++ + L A SFWEG D G TL VII KLP Sbjct: 834 ELKANDLRLVCQKWGVSVKG-LRDDFLADKHLSLFALKSFWEGFDAPGATLRGVIIPKLP 892 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 F P DPL R R + LP AVI +KQ GRLIR A D GVL++ D RL Sbjct: 893 FAKPSDPLSCER----SARDRSAWAHYVLPKAVIEVKQAAGRLIRTATDEGVLILADRRL 948 Query: 602 VMRPYGATFLASLP 615 + + YG +FL SLP Sbjct: 949 LTKGYGKSFLNSLP 962 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 94/269 (34%), Positives = 135/269 (50%), Gaps = 26/269 (9%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----AL 60 F+ DG + ++PR Q+ MA V A LVVEAGTG GK+ AYL P AL Sbjct: 282 FSVDGLIGSMYENYEPRIEQKIMAEEVLSAFSTSNNLVVEAGTGVGKSMAYLVPAAVTAL 341 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVAL----LKGRSNYLCLERLEQQA 116 R + I+T + AL DQL ++LP ++KAL+ G L LKG S+Y CL R+ Sbjct: 342 RNNIPIGIATKTNALLDQLVYKELPMLAKALEAEGAGELKHVALKGFSHYPCLRRISHVV 401 Query: 117 LAGGDLPVQI-------LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWP--LVTSTNDN 167 G + V+I + + + S+ QT DI ++ D + P +T+++ Sbjct: 402 SDGAHM-VEIAGQQYSQATSIAAILSYIEQTEYDDID---ALKLDYRTLPRYAITTSSRE 457 Query: 168 CLGSDCPMYKD-CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDE 226 CL CP + CFV AR++A A VVV NH LF D+ G L+P A I DE Sbjct: 458 CLRKRCPFFGTYCFVHGARRQAEHAHVVVTNHALFFRDLAAD----GNLLPHAKFWIVDE 513 Query: 227 AHQLPDIASQYFGQSLSSRQLLDLAKDIT 255 AH A + +L ++++L LA +T Sbjct: 514 AHGAEAEARKALAINLDAQEMLRLAGRLT 542 >UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WPW0_EGGLE Length = 966 Score = 128 bits (321), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 91/267 (34%), Positives = 130/267 (48%), Gaps = 17/267 (6%) Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL-----LPSPFDYS 429 ++V + E + ++ S +F SATL+V+D F S LG+ +E L S +D+ Sbjct: 699 INVGEAMNETLFERTHSTVFASATLAVDDKFDAFESALGLNASEHSTCQMCKLDSSYDFD 758 Query: 430 RQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT 489 + V ++P+ N+ L +L + A NG L T+ M ++ + + Sbjct: 759 AHMTVYVASDMPEPNEAAYLAALQRLLVDVHRAQNGSMLTLFTNRREMERCFDEVQPQLK 818 Query: 490 ---LPVLLQ--GETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTS 544 L V+ Q G + KG L F++ + L A SFWEG D G TL V+I KLPF Sbjct: 819 VDDLRVVCQKWGVSVKG-LRDDFLADEHLSLFALKSFWEGFDAPGATLKGVVIPKLPFAK 877 Query: 545 PDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMR 604 P DPL R R + LP AV+ KQ GRLIR ADD GVL++ D RL+ + Sbjct: 878 PTDPLSCERAA----RDDQAWRRYVLPAAVLETKQAAGRLIRKADDTGVLILADRRLLTK 933 Query: 605 PYGATFLASLPPAPRTRDIARAVRFLA 631 YG FL SLP RT + A +A Sbjct: 934 SYGKAFLNSLP--SRTIKVMTAAEIVA 958 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 95/270 (35%), Positives = 132/270 (48%), Gaps = 28/270 (10%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-ALRAK 63 F+ G + F+PR Q MA AV +A + L+VEAGTG GK+ AYL P AL A+ Sbjct: 264 FSETGLVGSLYEEFEPRIEQVAMAEAVRKAFSSSENLLVEAGTGVGKSMAYLVPAALTAR 323 Query: 64 KKVI---ISTGSKALQDQLYSRDLPTVSKALKYTG------NVALLKGRSNYLCLERL-- 112 I ++T + L DQL +LP + KAL+ A LKG S+Y CL ++ Sbjct: 324 ANNIAVGVATKTNTLLDQLVYHELPALEKALRLADPDRPSLTYAPLKGFSHYPCLRKIGH 383 Query: 113 -----EQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWP--LVTSTN 165 Q L G Q S LL S+ QT D+ S+ D + P L+T+T Sbjct: 384 IVEEGAQTKLFGNKEQTQAPSLAALL-SFIEQTEYDDMD---SLKIDYRVLPRRLITTTA 439 Query: 166 DNCLGSDCPMY-KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIF 224 ++CL CP + CFV +R++A AD+VV NH L D+V G L+P + Sbjct: 440 NDCLRRKCPYFGTSCFVHGSRRRAEAADIVVTNHSLLFCDLVAD----GGLLPPIRYWVV 495 Query: 225 DEAHQLPDIASQYFGQSLSSRQLLDLAKDI 254 DEAH A + F SLS+ + LA + Sbjct: 496 DEAHGAEAEARRAFSLSLSAEDITRLANRV 525 >UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW6_CRYCD Length = 1043 Score = 127 bits (320), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 94/266 (35%), Positives = 136/266 (51%), Gaps = 21/266 (7%) Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAE----SLLLPSPFDYS 429 L+V ++ E + + S +FTSAT+++ + F + LG+ E+ E L L S +D+ Sbjct: 778 LNVGNELAERLYARTHSIVFTSATMTIANAFDSFFTALGLSEEGERATVHLQLGSSYDFD 837 Query: 430 RQALLCVLRNLPQTNQPGSARQLAAMLRPIIE---ANNGRCFMLCTSHAMMRDLAEQFRA 486 + V+ ++P+ P AR LAA+ + +I+ A+ G L T+ M +A Sbjct: 838 ENMKIYVVEDMPE---PNDARYLAALEQLLIDIHRASAGSTLSLFTNRREMERAHSTVQA 894 Query: 487 TMT---LPVLLQ--GETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLP 541 + L V+ Q G + KG L +F++ + L A SFWEG D G TL V+I KLP Sbjct: 895 ALKGDGLRVVCQKWGVSVKG-LRDEFIADEHLSLFALKSFWEGFDAPGATLKTVVIPKLP 953 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 F+ P DPL AR + + LP AVI KQ GRLIR A D G L++ D RL Sbjct: 954 FSKPTDPLSCARAQ----MDAQAWSHYVLPQAVIETKQAAGRLIRSAHDTGSLILADRRL 1009 Query: 602 VMRPYGATFLASLPPAPRTRDIARAV 627 V + YG FL S+P T AR V Sbjct: 1010 VTKGYGKVFLKSMPSRNITILSAREV 1035 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 90/266 (33%), Positives = 133/266 (50%), Gaps = 25/266 (9%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 F+ G + K P F+ R+ Q MA AV A G+ L VEAGTG GK+ AYL PA+ + Sbjct: 307 FSSAGPVGKIYPEFEARDEQVTMAEAVNDAFSTGKNLAVEAGTGVGKSMAYLVPAVFTAQ 366 Query: 65 K----VIISTGSKALQDQLYSRDLPTVSKALKYTGNVAL--LKGRSNYLCLERLEQQALA 118 K V ++T + AL DQL +LP +S A+ G ++ LKG S+YLCL ++E+ Sbjct: 367 KNGITVGVATKTNALLDQLMHHELPRLSSAV---GGISYCSLKGFSHYLCLRKVERLMQT 423 Query: 119 GGDLPV---QILSDVILLR---SWSNQTVDGDISTCVSVAEDSQAWPL--VTSTNDNCLG 170 G + + LS L S+ Q+ DI + D + P +T+T+ +CL Sbjct: 424 GPHMKTVQDRELSQAPALAGVLSFIEQSEYEDID---GMRVDYRLMPRYEITTTSHDCLR 480 Query: 171 SDCPMY-KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQ 229 CP Y + C+V +R KA AD+VV N L D+ G L+P + DEAH Sbjct: 481 KKCPFYGQRCYVHGSRFKAEAADIVVTNQTLLFCDVAAD----GGLLPSIRYWVIDEAHN 536 Query: 230 LPDIASQYFGQSLSSRQLLDLAKDIT 255 A + G S+ +L A+ ++ Sbjct: 537 AEGEARRALGSSIELDELARRAQRVS 562 >UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECT2_9ACTN Length = 964 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 80/251 (31%), Positives = 131/251 (52%), Gaps = 15/251 (5%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK 63 D+AP G + + P ++PR+ Q MA+ V A+ G V+EAGTG GK+ AYL P A Sbjct: 273 DYAPGGLVNRMYPTYEPRDEQIAMALEVRDALVTGTHRVIEAGTGVGKSMAYLVPFAEAA 332 Query: 64 KK----VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG 119 ++ V I+T S L DQL +LP +++ L + LKG +Y CL +LE+ + Sbjct: 333 RRNNITVGIATKSNNLADQLMYHELPKLAEQLDGGLSFCALKGYDHYPCLRKLERMSRGQ 392 Query: 120 GDL-----PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCP 174 ++ P L+ V ++ ++ Q+ DGD+ + + + S P T+ + C CP Sbjct: 393 VEITTKRDPADTLTAVAVIMAYVCQSADGDLDS-LGIRWRSVNRPDFTTASRECARRLCP 451 Query: 175 MYKD-CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDI 233 + D C V AR++A ADVVV NH L ++ + G ++P + DEAH + Sbjct: 452 FFPDKCLVHGARRRAAHADVVVTNHSLLFRNVAAE----GRILPPIRHWVIDEAHSIERE 507 Query: 234 ASQYFGQSLSS 244 A + + + +S+ Sbjct: 508 ARRQWARVVSA 518 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 86/241 (35%), Positives = 120/241 (49%), Gaps = 18/241 (7%) Query: 393 IFTSATLSVNDDLHHFTS-----RLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPG 447 IF SAT++V+ HF R+G + SL L S +D+ + V ++P Sbjct: 709 IFASATMTVSKSFEHFNHAVGLDRIGASTSSSLHLDSSYDFDSNMAVVVAGDIPDPRDRE 768 Query: 448 SARQLAAMLRPIIEAN---NGRCFMLCTSHAMMRDLAEQFRATMTLPVL----LQGETSK 500 S L A+ R + +A+ G L T+ M DL + M L Q +S Sbjct: 769 S--YLTALERVLFDAHLAMGGSVLTLFTNRRDMEDLYARVEPKMARAGLELNCQQRNSSP 826 Query: 501 GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLR 560 +L +F++ + L A +FWEG D G+TL VII KLPF+SP DPL R LR Sbjct: 827 RRLRDRFINEPTSSLFALKAFWEGFDASGETLRCVIIPKLPFSSPTDPLSCER----NLR 882 Query: 561 GGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 + LP+AV+ +KQ GRLIR + D GVL++ D RLV + YG FL SLP + Sbjct: 883 EDRAWARYSLPEAVLEVKQAAGRLIRSSTDCGVLILADPRLVTKGYGKKFLTSLPTSSYQ 942 Query: 621 R 621 R Sbjct: 943 R 943 >UniRef50_C0N9A8 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N9A8_9GAMM Length = 692 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 95/300 (31%), Positives = 145/300 (48%), Gaps = 35/300 (11%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKG---QPLVVEAGTGTGKTYAYLAPALRA---- 62 ++ + + FKPR Q+QM+ + +++K + VVEA TG GKT AYL+ + A Sbjct: 8 RIGQVVADFKPRPQQQQMSEFIAASMQKKAQQRVAVVEAPTGVGKTLAYLSGTIEAAINN 67 Query: 63 KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALA---- 118 KK ++IST + LQ QL +DLP S AL++ +KGR Y+C +L Q A A Sbjct: 68 KKVLVISTATVNLQQQLIQKDLPLFSSALEHPIRFVQVKGRRRYVCPSKLSQLATAPEQQ 127 Query: 119 --GGDLP------VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG 170 G D+ + + LL W + DGD + E ++ W +++ ++ C G Sbjct: 128 ELGIDIDDKYKRVLHMAHAKQLLSEWDQERWDGDRDSRSDKLE-AELWQQISTDSEGCAG 186 Query: 171 SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADVMIFDEAH 228 C Y C K R++ + A V+V NH L L+D + G G ++ PE + +FDEAH Sbjct: 187 KSCSFYLRCPYYKLRREMLSAQVIVANHDLILSD---ADLGGGLVLPNPEEALFVFDEAH 243 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE 288 LP A + ++L+ QL Y+T L+K LA DF L E Sbjct: 244 NLPRKALDHAAKALNFVQL----------YQTTETADSVLKKIPSALAFRQHDFGYMLSE 293 Score = 111 bits (278), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 77/252 (30%), Positives = 123/252 (48%), Gaps = 11/252 (4%) Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE---QAESLLLPSPFDYSR 430 P++ A + + S + TSATL H F G+ + L +PSPF+YS Sbjct: 436 PMTAAYFLDRSLWTRAYSVVLTSATLRGMGLFHRFRMDCGLHRFSEQHFLAVPSPFNYSD 495 Query: 431 QALLCV--LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 QA L + ++ LP Q +++ L II+ + +L TS +M + Q + Sbjct: 496 QATLNLPHMQFLPNEQQQQWRQEVVKQLASIIDVDEA-TLVLFTSREVMEAVYRQLPQRL 554 Query: 489 TLPVLLQGET-SKGQLLQQFV----SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFT 543 T +L+QG+T S ++Q+ + + +++ F EG+D+ G+ + VII KLPF Sbjct: 555 TTKILIQGDTLSPKNMVQRHIRQIEAGKGSIIFGMDRFAEGIDLPGNLCTHVIITKLPFP 614 Query: 544 SPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 P+ +A+ E +GG PF + LP + L Q GRL+R D G + I D RL+ Sbjct: 615 VFTRPIEQAKQEWIIRKGGQPFTALSLPAVSVKLIQACGRLLRKETDTGRITILDRRLLS 674 Query: 604 RPYGATFLASLP 615 + YG L LP Sbjct: 675 KGYGKQLLQHLP 686 >UniRef50_Q21I38 Helicase c2 n=16 Tax=Gammaproteobacteria RepID=Q21I38_SACD2 Length = 720 Score = 126 bits (316), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/244 (33%), Positives = 128/244 (52%), Gaps = 8/244 (3%) Query: 382 KELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYSRQALLCVLRNL 440 K+L ++ G+ + TSATL+ + F R G + + ++PSPFDY +A+L + Sbjct: 476 KDLWSRCCGA-VVTSATLTALNSFDRFKIRSGTYDDSHYSVVPSPFDYPNRAVLRIPSFA 534 Query: 441 PQTN-QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETS 499 + N + L II+ G +L +S M ++ +Q A + +L+QG S Sbjct: 535 VEANFAADHTDSMIEYLPEIIDKKAG-TLVLFSSRKQMLEVFDQLPADFRMLILMQGSQS 593 Query: 500 KGQLL----QQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARME 555 K L+ ++ +++ +SF EGVD+ G + VII K+PF PDDPL + E Sbjct: 594 KQVLVSDHKKRIDEGSGSIIFGLASFAEGVDLPGKYCTHVIIAKIPFAVPDDPLEASLAE 653 Query: 556 DCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 RGG+ F ++ +PDA + L Q GRL+R D+GV+ I D RL+ + YG L SLP Sbjct: 654 WVESRGGNSFMQITVPDAAMRLVQACGRLLRTESDKGVVTIMDKRLITKRYGQALLNSLP 713 Query: 616 PAPR 619 P R Sbjct: 714 PFKR 717 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 78/258 (30%), Positives = 117/258 (45%), Gaps = 44/258 (17%) Query: 18 FKPREPQRQMAVAVTQAI------------EKGQPLVVEAGTGTGKTYAYLAPALRAKK- 64 KPR Q+ M + + + +G V+EAGTGTGKT +YL AL K Sbjct: 23 LKPRYGQKLMIAEIAKTLGSIQLNADGERQTEGHLCVIEAGTGTGKTVSYLLAALPVAKA 82 Query: 65 ---KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 KV+++T + ALQ+Q+ +DLP + + N L KGR Y+CL +L++ + D Sbjct: 83 LGKKVVLATATVALQEQVVLKDLPDLIRYADLKFNFCLAKGRGRYMCLSKLDKILTSSDD 142 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAE------------------DSQAWPLVTS 163 + L ++ + D S+ E D W VT+ Sbjct: 143 TQF-----IPLYEDEHSEISEFDTKLYTSMMEKLGEGKWDGDRDNWHDEIDQPVWQRVTT 197 Query: 164 TNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADV 221 + C G +C + C AR+ +AD +V NH L LAD+ + G G ++ PE + Sbjct: 198 DHRQCTGRNCKFVRQCAFFNARELLDEADCIVANHDLVLADLAL---GGGAILPAPEETI 254 Query: 222 MIFDEAHQLPDIASQYFG 239 IFDE H LPD A +F Sbjct: 255 YIFDEGHHLPDKALNHFA 272 >UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38 Tax=Enterococcus RepID=C2JLR4_ENTFA Length = 929 Score = 125 bits (315), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 124/234 (52%), Gaps = 15/234 (6%) Query: 393 IFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTN---QPGSA 449 I+TS TL ++ + RLG+ + LP+P++Y+ A + V P+ Q S+ Sbjct: 677 IYTSGTLKFGNNKKYLPQRLGLTEVTFKTLPTPYNYAENARVYV----PEEAVAIQNASS 732 Query: 450 RQLAAMLRPIIE---ANNGRCFM-LCTSHAMMRDLAEQFRATMT---LPVLLQGET-SKG 501 ++ + IE A R + L TSH ++ + Q + + VL QG + S+ Sbjct: 733 YEMGQYISDTIEKLMAQEERSMLVLFTSHELLSTVYHQVQPRLLEKGQEVLAQGISGSRE 792 Query: 502 QLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRG 561 ++L++F + +L+ SFWEGVD+ G L L+I+ +LPF +P PL++A+ G Sbjct: 793 KILKRFSNGKPNVLLGADSFWEGVDLPGTALQLLIVTRLPFENPKRPLVQAKYAYLEAEG 852 Query: 562 GDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 PF + +P A + L+Q +GRLIR +DRG L+I D RLV YG + + P Sbjct: 853 IQPFAQEAVPKAALRLRQALGRLIRSEEDRGALLILDRRLVTAKYGKRLIKAFP 906 Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 110/235 (46%), Gaps = 16/235 (6%) Query: 18 FKPREPQRQMAVAVTQAIEKG--QPLVVEAGTGTGKTYAYLAPA---LRAKKKVIISTGS 72 F R Q +M V +G + L +EA TGTGKT YL P +K VIIST S Sbjct: 261 FAYRAEQSRMMNLVYDHFTEGTTKDLFIEAATGTGKTLGYLLPMSYLATPEKPVIISTVS 320 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYL---CLERLEQQALAGGDLPVQILSD 129 LQ+QL +DLP ++ + ++K +YL C + Q + + Sbjct: 321 IVLQNQLVEKDLPLANQICQGKLRGIVIKSHRHYLDLQCFKATLNQPTPQKQYALYQMGV 380 Query: 130 VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAM 189 ++ W +T GD+ + W VT + L +Y+ F+ KK Sbjct: 381 LV----WLLETETGDLDELQLTNLNHLFWKEVTHRGLDFLSKKDELYEVDFLRHLYKKVA 436 Query: 190 DADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 ++V++VNH FLA +++ L+PE+ +I DEAH LPDIAS+ + ++S Sbjct: 437 QSNVLIVNH-AFLAQESLRKQP---LLPESPWLIIDEAHHLPDIASRMASERVNS 487 >UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit n=4 Tax=Lactococcus lactis RepID=D2BLE9_LACLK Length = 794 Score = 124 bits (312), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 150/599 (25%), Positives = 249/599 (41%), Gaps = 96/599 (16%) Query: 21 REPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLY 80 R Q ++A + + Q +EA TG GKTY YL P L + K +++ST +K LQ QL Sbjct: 250 RSKQEKLAHLMETELTHLQASFIEAPTGLGKTYGYLLPILASGKGLVVSTATKVLQKQLV 309 Query: 81 SRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD-LPVQILSDVILLRSWSNQ 139 + P + K + +A + G NY+ L + + L D +I IL+ W + Sbjct: 310 NDVAPKLGKT--FGLKMAKIVGTKNYISLRKFSELLLNNTDGKNFEIFKMKILI--WLTE 365 Query: 140 TVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHH 199 T G++ V + + ++ +D + + Y+ F +KA+K+A A++ VVNH Sbjct: 366 TRTGELDEVSKVMTNDDYFEVI--RHDGYVNTKQLHYEQDFWLKAQKEAEQAEIKVVNH- 422 Query: 200 LFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYR 259 A ++ + + + E E V++ DEA QL I +SL D I Sbjct: 423 ---AYLIERLADYPETFLENRVLVVDEAQQLFPIMENAGQKSLK-------ITDELIKID 472 Query: 260 TELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCY 319 E + QL K RL +S ++ N +EL D ++ Sbjct: 473 AETSENPQLTK---RLQESLV----------FQLNKKEL--------------DLNKIKI 505 Query: 320 DVAKLSL-GRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVA 378 D +L L SALL+A + ++R + G Y + +F Sbjct: 506 DADELGLRNLSALLEA--DNQIVWR----------ENGMLYASDQDFYNF---------- 543 Query: 379 DKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCV-- 436 E + K ATLS++ D F LG + + Q LL V Sbjct: 544 ----ERLIPKNTKLFMLGATLSLSKDKPSFPDLLGFTDYRFFKIEGN-QATNQQLLTVTD 598 Query: 437 ---LRNLPQTN----QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT 489 ++NL + S +L+ + P++ +L TS + +AE+ A Sbjct: 599 APNIKNLSLIDYADYTANSIGELSKLNLPMV--------VLFTSKMALTFVAEKLSAE-G 649 Query: 490 LPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDP 548 +L Q S Q+ ++F +L+ SFWEGVD +++I +LPF +PDD Sbjct: 650 FDILAQDINGSPAQIKKKFDKGEGKILLGLGSFWEGVDFDKQNQVILVIPRLPFATPDDI 709 Query: 549 LLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 L K + +PF + +P A + L+Q +GR+ R + +V+ D RL + Y Sbjct: 710 LTKKYAQKFE----NPFYDFNVPMATLKLRQAIGRVNRRKNQYSSIVVLDKRLAGKSYA 764 >UniRef50_C5CG21 Helicase c2 n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CG21_KOSOT Length = 835 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 125/240 (52%), Gaps = 17/240 (7%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----AL 60 F+ G L + G++ R+ Q A+ + ++IE Q +++EAGTGTGK+ AYL P ++ Sbjct: 144 FSEGGLLEDILEGYEYRQEQFMTALEIAESIEGKQGIMIEAGTGTGKSLAYLIPSAYYSI 203 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTG-NVALLKGRSNYLCLER-LEQQALA 118 +++++ST ++ LQDQL +D+ V K V LKGR Y CL++ E+ A Sbjct: 204 SKGEQIVVSTRTRMLQDQLARKDVAIVKKLPNLEELRVWTLKGRERYFCLKKYFEELEYA 263 Query: 119 GGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 G + +++ + WS +T GD+ E+ + T+T CL CP + Sbjct: 264 VGSGKSKNRTELFGVLLWSIKTGSGDLDELHLKEENRNRF---TATRFECLRKLCPFFNR 320 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVK--------ESGFGELIPEADVMIFDEAHQL 230 C +R A +AD+V+ NH L ++ ++ + G L+P+ V+I DEAH+L Sbjct: 321 CPYYNSRDNAQNADIVITNHSLLFSEAHIRLEDSREGEDEPIGMLLPKFKVLIVDEAHEL 380 Score = 115 bits (289), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 127/237 (53%), Gaps = 14/237 (5%) Query: 393 IFTSATLSV----NDDLHHFTSRLGIEQA-ESLLLPSPFDYSRQALLCVLRNLP--QTNQ 445 +F SATL V +D ++ LG+ ++ ++ L S FD+ Q +++++ Q N Sbjct: 575 VFISATLWVYSGRSDGFNYARRILGLNESFHAIKLGSSFDFQEQLKFYIVKDMAKYQPNN 634 Query: 446 PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGE---TSKGQ 502 Q A ++ +++ G +L TS+ M + + + L + LQ + S Sbjct: 635 REYLNQGANLISEMLKIVKGSAMVLFTSYKDMYYVISKISEEL-LDIRLQIQEPNNSPTA 693 Query: 503 LLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGG 562 ++ + V++ N+++ SFWEG+D+ G+ L L+II KLPF PDDPL+ AR++ + Sbjct: 694 IVNEHVNSENSVIFGVRSFWEGIDLPGEHLKLLIIFKLPFERPDDPLINARIKHYGTKNY 753 Query: 563 -DPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV--MRPYGATFLASLPP 616 + ++ P + +QG+GRLIR +DRGVLV+ DNR+V + Y L SL P Sbjct: 754 VEGLNKYYYPKMITAFRQGIGRLIRTRNDRGVLVVLDNRIVDGNKIYSRKLLRSLSP 810 >UniRef50_Q0A9Y9 Helicase c2 n=2 Tax=Gammaproteobacteria RepID=Q0A9Y9_ALHEH Length = 708 Score = 119 bits (297), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 83/257 (32%), Positives = 122/257 (47%), Gaps = 32/257 (12%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAI----EKGQPLVVEAGTGTGKTYAYL---APALRA 62 Q+ + +PGF+ R QRQM V + + E + L +E TGTGK+ AYL P RA Sbjct: 16 QVGQNVPGFRSRSQQRQMIAEVARTLAGECEGRRLLAIEGPTGTGKSLAYLLAGIPVARA 75 Query: 63 K-KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 + +++IIST + ALQ+Q+ RDLP + T + L+KGR Y+C LEQ Sbjct: 76 EGRQLIISTATVALQEQIVDRDLPALQANSGLTFSYGLIKGRRRYVCTRNLEQLVGGAAQ 135 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQA--W----------------PLVTS 163 + + W + G++ ++ D QA W P+ T Sbjct: 136 GEMDLGGPSAGPAHWPRKPQTGELEHLQALYRDLQAGDWDGDLDRRPPPAADLQGPMTTD 195 Query: 164 TNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADV 221 + C G CP DC +AR+ + DV+V NH L LAD+ + G G ++ PE Sbjct: 196 RH-GCTGRGCPHVSDCPFHRARRGMEEQDVLVANHDLVLADLAM---GGGVILPPPEQVF 251 Query: 222 MIFDEAHQLPDIASQYF 238 +FDEAH L A+ F Sbjct: 252 YVFDEAHHLAARATDAF 268 Score = 101 bits (252), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 110/232 (47%), Gaps = 9/232 (3%) Query: 393 IFTSATLSVNDDLHHFTSRLGIEQAES---LLLPSPFDYSRQALLCVLRNLPQTNQP-GS 448 + TSATL+ G+E+ + L L SPFDY +A+L V R P Sbjct: 462 VLTSATLTALGRFDRMRLACGLEEDDGTRYLSLASPFDYRNRAVLHVPRMASDPRDPEAH 521 Query: 449 ARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQ--- 505 +L +L I+E G +L S + + E A +L Q E + +LL Sbjct: 522 TGELIRVLPGILEPEGG-ALVLFASARQLDAVYEGLPAEWQGRILRQRERPRVELLAAHA 580 Query: 506 QFVSAGN-ALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDP 564 + V AG +++ + F EGVD+ GD V+I KLPF PD P+ E RG +P Sbjct: 581 RAVEAGEPSVIFGLAGFAEGVDLPGDLCRHVVIAKLPFAVPDSPVEATLAEWLESRGRNP 640 Query: 565 FDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPP 616 F ++ +PDA + L Q GRL+R D G + + D RL+ YG L LPP Sbjct: 641 FMDITVPDAGMKLVQACGRLLRSEADSGRVTVLDRRLLTHRYGQALLNGLPP 692 >UniRef50_C0XBA8 ATP-dependent helicase DinG n=1 Tax=Lactobacillus gasseri JV-V03 RepID=C0XBA8_9LACO Length = 773 Score = 117 bits (294), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 150/621 (24%), Positives = 262/621 (42%), Gaps = 70/621 (11%) Query: 19 KPREPQRQMAVAVTQAIE----KGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIIST 70 KPR Q QM++ + + + + + VEA GTGKT L P + K++ T Sbjct: 22 KPRVSQVQMSLDIADFLYNKKIRSKIMFVEAPVGTGKTLGALIPTILYSSNFHKRITYVT 81 Query: 71 GSKALQDQLYSRDLPTVS--KALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILS 128 G+K LQ Q++ DL + + + L G+ NY C++ L P Q Sbjct: 82 GTKNLQRQVFYEDLEMLKGINLMLPSSETVLAMGKDNYACIDNLHNNR--SKFQPAQRFD 139 Query: 129 DVILLRSWSNQTVDG---DISTCVSVAEDSQ-----AWPLVT--STNDNCLGSDCP--MY 176 +L+ +QT G +I + A D W L+ C +CP Y Sbjct: 140 ---MLKKILDQTTTGLRVEIDNKLK-ARDQDPLSDFEWDLIKIKGKQKACKIYNCPGHRY 195 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 ++ F K + + ++ + L +++ +++ + P +++ DEA QL D + Sbjct: 196 RETFNKKPFLTVTNQNQMIQS----LINVIEEKNSIVSVTP--GIIVVDEA-QLFD--NS 246 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLR 296 + G +S + +L K +T+ T+ ++K D L ++F L++ Y N R Sbjct: 247 FLGVVKNSLNISELKK-LTVK-------TKYIKKFNDNLKIIQKEF-LKIKNKDYGLNTR 297 Query: 297 ELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPG 356 P + F L + E C L + L + + +N Sbjct: 298 Y----PVPKTVFQSLHNIQE-C-----LQSSENIELFGILNKNPYAKYEDLIFNILNTKD 347 Query: 357 YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSW---IFTSATLS-VNDDLHHFTSRL 412 W + + P + K KE + QK + IF S TL+ N+ + + Sbjct: 348 SISWMSIAKEN-EITFIPKNFYKKIKEWI-QKLSVYNKIIFLSGTLTNTNNPIQEIENEW 405 Query: 413 GIEQAESLLLPSPFDYSRQALLCV----LRNLPQTNQPGSARQLAA-MLRPIIEANNGRC 467 GI+ SPF Q L + NL N+ A ++ +RP+ +G Sbjct: 406 GIKDFIYKKYNSPFSPKDQVYLMLPEKGFNNL--NNKSKHATEMVERTIRPLCNRIHGGI 463 Query: 468 FMLCTSHAMMRDLAEQFRATM-TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVD 526 +L S + L+ + ++ VL QG+ S L + F +++L+ + SF G Sbjct: 464 LILSNSLELKDHLSIKMKSKFENRLVLTQGQMSNNSLTKLFKKEKDSILIGSGSFKTGFS 523 Query: 527 VRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIR 586 + G+ L V++ LPF+ PDDP +K +++ R +++ L + L+Q +GRLIR Sbjct: 524 IPGEALQAVVLSSLPFSVPDDPYIKLKIQTFAKRYHKSPNDISLQLMLKELEQSMGRLIR 583 Query: 587 DADDRGVLVICDNRLVMRPYG 607 DD GV+V+ D+RL +PYG Sbjct: 584 SIDDYGVIVVTDSRLYSKPYG 604 >UniRef50_UPI0001850E3B bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001850E3B Length = 305 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 120/237 (50%), Gaps = 9/237 (3%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKKKV 66 + KA + R Q +M V + + + +V+EAGTG GKT YL P AL K+V Sbjct: 1 MKKAYSSYDNRIDQLKMMDHVYEQFSQKESMVIEAGTGMGKTMGYLLPSAYYALEHNKRV 60 Query: 67 IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQI 126 IIST + LQ Q+ ++P ++ L + +V++LKGR++YL L R E Q+L + + Sbjct: 61 IISTYTNQLQAQILYNEIPKLNNMLSFPIHVSILKGRTHYLDLFRFE-QSLYENEKQFDV 119 Query: 127 LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARK 186 + + + W +T GD+ + W V S++ P Y + A+K Sbjct: 120 VLTKLQILVWLTETETGDVEELNLTSGGYLFWNRVKSSSYMIDEKSNPWYSYDYYEHAKK 179 Query: 187 KAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLS 243 +A A++V+ NHH+ + + ++S F + + DEAH L ++ ++ G +LS Sbjct: 180 QATKANIVITNHHMLIQSLSQEDSFFA----DCSHYVIDEAHHLEEVTQRFLGANLS 232 >UniRef50_UPI0001BC908D ATP-dependent DNA helicase DinG n=1 Tax=Pseudomonas syringae pv. tabaci ATCC 11528 RepID=UPI0001BC908D Length = 508 Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 99/325 (30%), Positives = 149/325 (45%), Gaps = 64/325 (19%) Query: 18 FKPREPQRQMAVAVTQAI----------EKGQPLVV--EAGTGTGKTYAY----LAPALR 61 KPR QR M V + + G P VV EAGTGTGKT AY + A Sbjct: 23 LKPRYGQRLMIAEVAKVLGDIDTDEEGRRSGDPAVVAVEAGTGTGKTVAYAIASIPTAKA 82 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE---QQALA 118 A K+++I+T + ALQ+Q+ +DLP + + AL KGR Y+CL +L+ Q++ A Sbjct: 83 AGKRLVIATATVALQEQIVYKDLPDLMRNSGLNFTFALAKGRGRYMCLSKLDALLQESDA 142 Query: 119 -----------GGDLPVQILSDVI---LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTST 164 G + V S + +L+ + DGD + D Q W +T+ Sbjct: 143 TNATAQLFEEEGFKIEVDEASQKLFTSMLQKLAGNKWDGDRDSWPQELAD-QDWARLTTD 201 Query: 165 NDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEA--DVM 222 + C CP ++ C KAR+ DV+V NH + LAD+ + G G ++P+ + Sbjct: 202 HSQCTNRHCPNFQQCAFYKAREGMGKVDVIVTNHDMVLADLAL---GGGAVLPDPRDTLY 258 Query: 223 IFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDF 282 +FDE H LPD A +F A+ T LK T AD L Q+A++ Sbjct: 259 VFDEGHHLPDKAIGHF------------------AHYTRLKST------ADWLEQTAKNL 294 Query: 283 RLQLGEPGYRGNLRELLAN-PQIQR 306 L + G+L +L+ P++ R Sbjct: 295 AKLLAQHPLPGDLGKLIEQVPELAR 319 >UniRef50_Q840H8 Putative uncharacterized protein (Fragment) n=2 Tax=Pseudomonas RepID=Q840H8_PSECL Length = 386 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 79/236 (33%), Positives = 125/236 (52%), Gaps = 14/236 (5%) Query: 393 IFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYSRQALLCV--LRNLPQTNQPGSA 449 + TSATL+ F R G+ ++A + ++PSPF ++ +L V L+ P+ +A Sbjct: 153 LVTSATLTALGTFDRFRMRAGLPKKAVTAVVPSPFHHADAGVLRVPDLKADPRD----AA 208 Query: 450 RQLAAMLR---PIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQ 506 AA++R ++E + G +L +S M+D+ + V +QG SK + L + Sbjct: 209 AHTAAIIRDLPELVEGSRG-TLVLFSSRKQMQDVFDGLDRDWRKQVFIQGNLSKQETLNK 267 Query: 507 F---VSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGD 563 V G++ ++ F VD+ G V+I K+PF+ PDDP+ A E RGG+ Sbjct: 268 HKARVDGGDSSVLFGCEFCRSVDLPGAYCEHVVIAKIPFSVPDDPVEAALAEWIEARGGN 327 Query: 564 PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPR 619 PF E+ +PDA + L Q GRL+R +DRG + + D RLV + YG L +LPP R Sbjct: 328 PFMEISVPDASLKLVQACGRLLRTEEDRGTITLLDRRLVTQRYGKAILNALPPFRR 383 >UniRef50_A1WDD4 Helicase c2 n=11 Tax=Comamonadaceae RepID=A1WDD4_ACISJ Length = 758 Score = 117 bits (292), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 83/233 (35%), Positives = 113/233 (48%), Gaps = 10/233 (4%) Query: 393 IFTSATLSVNDDLHHFTSRLGI---EQAESLLLPSPFDYSRQALLCVL--RNLPQTNQPG 447 + TSATL+ F G+ E +L +PSPFDY+ Q L R P+ Q Sbjct: 518 VLTSATLTSCGQFDFFLRESGLFGDEAVTTLAVPSPFDYALQGTLVATETRAEPRDAQAF 577 Query: 448 SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLL--- 504 +A + A+L + G +L TS MR + M VL+Q + QLL Sbjct: 578 TAEMVDALLSDLALVEAG-ALVLFTSREQMRQAVDMLPTAMRSAVLVQNTLPRPQLLARH 636 Query: 505 QQFVSAGN-ALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGD 563 ++ V+ G +++ SF EG+D+ G + I KLPF PDDP+ +AR E R G D Sbjct: 637 RERVAEGQPSIIFGMQSFGEGLDLPGRLCESLFITKLPFAPPDDPVGEARAEWLRGAGRD 696 Query: 564 PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPP 616 PF E+ +P I L Q VGR IR +DR + D RLV YG L LPP Sbjct: 697 PFSELVVPATAIRLAQWVGRAIRTEEDRAHVYCYDKRLVRTGYGQRLLQGLPP 749 Score = 116 bits (290), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 96/329 (29%), Positives = 146/329 (44%), Gaps = 70/329 (21%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQ--------------PLVVEAGTGTGKTYAYL 56 + ++ GF+ RE QR+MA V Q + Q VV+AGTG GK+ AY Sbjct: 46 VVQSTAGFRVREGQRRMAEQVAQTFSQAQLGKLEDDDALPQRAIAVVQAGTGVGKSLAYS 105 Query: 57 APA----LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLC---L 109 PA L +V+IST + ALQ+QL +DLP ++ ++ AL KGR Y+C L Sbjct: 106 VPAIAMALARGTRVLISTATVALQEQLVHKDLPALAARMEQPFQFALAKGRGRYVCKLKL 165 Query: 110 ERL---------------------EQQALAGGDLPVQ----------ILSDVILLRSWSN 138 ERL +++A G P ++D + W Sbjct: 166 ERLAGGGAAGPGGDGDLPDDDLFADEEAEQRGKRPRHESEARMKFYASMADALATSEW-- 223 Query: 139 QTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNH 198 DGD T + E +AW V + +C G CP++ C + RK+ + A V+V NH Sbjct: 224 ---DGDRDTLATPPE-PEAWSPVAAEASSCTGKHCPVFNQCTYYERRKQLVAAQVIVANH 279 Query: 199 HLFLADMVVKESGFGELIPEAD--VMIFDEAHQLPDIASQYFG--QSLSSRQLLD--LAK 252 L L+ + + L+PE D +++ DEAH LP A F LS +D ++ Sbjct: 280 DLLLSSLGAR------LLPELDNCLLVIDEAHHLPATALDQFACEADLSRLTWIDRLASR 333 Query: 253 DITIAYRTELKDTQQLQKCADRLAQSAQD 281 + I E+++ + A RL + QD Sbjct: 334 ALRIGQLVEVEEIADIPNHAARLRAALQD 362 >UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lactobacillus salivarius RepID=Q1WU39_LACS1 Length = 929 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 72/265 (27%), Positives = 131/265 (49%), Gaps = 7/265 (2%) Query: 358 SYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-Q 416 +Y Y + H L L + + + QK + + A L++ + + +L + Q Sbjct: 642 TYPYRQENGHLRLNFIMLDGENFLNDKVYQKFSTVLLVGANLAMKETRGYMFRQLDLNGQ 701 Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAM---LRPIIEANNGRCFMLCTS 473 + + FDYS+Q +L++ P + + L I+ +NN + +L S Sbjct: 702 VKIKKYDNIFDYSKQTRAYILKDTPDITSISKKEYIEYLSHDLEKILLSNNRQTMILFNS 761 Query: 474 HAMMRDLAEQFRATM--TLPVLLQGET-SKGQLLQQFVSAGNALLVATSSFWEGVDVRGD 530 ++ + + + +L QG T S ++ ++F+ +L+ +FWEG+D+ + Sbjct: 762 LEIIESVYPKLVKKIGSKREILAQGITGSVEKIKKRFMLGEGKILLGAGAFWEGIDLPEN 821 Query: 531 TLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADD 590 L +VI+ +LPF SPD L KAR +G + F + LP+A + L+QG GRLIR D Sbjct: 822 NLEMVIVTRLPFQSPDTVLNKARYRKLEKKGINSFYNLALPEATLRLQQGWGRLIRTPKD 881 Query: 591 RGVLVICDNRLVMRPYGATFLASLP 615 +G+ V+ D+R+ + YG F++S P Sbjct: 882 KGIFVLLDSRIANKNYGEKFISSFP 906 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 91/200 (45%), Gaps = 13/200 (6%) Query: 36 EKGQPLVVEAGTGTGKTYAYLAP-ALRA-KKKVIISTGSKALQDQLYSRDLPTVSKALKY 93 +K + + +A TG GKT YL P A +A ++KV+IST + LQ+QL +D+ + + + + Sbjct: 273 KKSKIYIYDAATGIGKTLGYLMPIAYKATEEKVVISTATTTLQNQLVDKDISILKEVIPF 332 Query: 94 TGNVALLKGRSNYLCLERLEQQ-ALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVA 152 N+ LKG +Y+ +++ Q ++ QI +++ W +T GD+ ++ Sbjct: 333 NLNIVNLKGSQHYIDIDKFYQSLSIPQSKKATQIQMTLLV---WLMETSTGDMEELNLLS 389 Query: 153 EDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGF 212 + + L Y F+ + A++++ NH L S Sbjct: 390 MQDTIFAQIEHHGIRGLNKKSAFYSVDFLKRQEILRRHANIIITNHAYLL-------SHV 442 Query: 213 GELIPEADVMIFDEAHQLPD 232 +L V+I DEA L D Sbjct: 443 DKLGGNDTVLIVDEAQHLND 462 >UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03FN6_PEDPA Length = 929 Score = 115 bits (289), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 62/178 (34%), Positives = 102/178 (57%), Gaps = 8/178 (4%) Query: 442 QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT---MTLPVLLQG-E 497 ++NQ A LA + + N + +L S +R++ + + + ++ QG Sbjct: 731 ESNQDQYADFLAEAIEALTRDVNRQTLVLFNSLETLRNVYNRLHDSDLNESRRIIAQGIH 790 Query: 498 TSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDC 557 SK +++++F NA+L +SFWEGVD GD L +I+ +LPF SP+D +++ ++ Sbjct: 791 GSKAKIIREFNDEENAILFGAASFWEGVDFPGDRLEYLIVTRLPFRSPEDRMVQFARKNK 850 Query: 558 RLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 R F LPDA++T KQG+GRLIR++DD GV V+ DNR++ + YG F+ LP Sbjct: 851 R----SSFMSFVLPDALLTFKQGIGRLIRNSDDTGVAVMLDNRIINKDYGKLFIKQLP 904 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 20/227 (8%) Query: 30 AVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKKKVIISTGSKALQDQLYSRDLP 85 +VT+ +K +V+EA TG+GKT YL P A ++KV++S + LQ+Q+ + Sbjct: 273 SVTEGFKKH--VVIEAPTGSGKTLGYLFPLSYIAREQQRKVVVSVPTTILQNQVLAVGRQ 330 Query: 86 TVSKALKYTGNVALLKGRSNYLCLE----RLEQQALAGGDLPVQILSDVILLRSWSNQTV 141 ++ L+ A+LKG SNYL LE + Q L+ ++++ IL+ W +T Sbjct: 331 QLNAILETPMQFAILKGSSNYLNLEAFMKSITHQTLSKDS---RLVAMKILV--WLTKTD 385 Query: 142 DGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLF 201 GD S + L ++ F +A KK AD ++ NH + Sbjct: 386 TGDFDEINHHINFSNFVDGIRHHGKTVLNPKSKFFEYDFYRRAMKKLKYADFIITNHR-Y 444 Query: 202 LADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL 248 LA + E G + P +++ DEA P I S + L +L+ Sbjct: 445 LA-LHADEIGESDQQP---LLVIDEAQHFPTIVSNMNQKFLDLNELM 487 >UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_LACRG Length = 933 Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 76/236 (32%), Positives = 120/236 (50%), Gaps = 17/236 (7%) Query: 393 IFTSATLSVNDDLHHFTSRLG---IEQAESLLLPSPFDYSRQALLCVLRNLPQ---TNQP 446 +F ATL+ T++LG + ++ L L SPF Y QA + V + P + Sbjct: 673 VFVGATLTAERSFDFLTAQLGYHELPESSFLKLRSPFHYRDQAKVLVATDAPHAADVSDD 732 Query: 447 GSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPV------LLQGET-S 499 A LA + + + N + +L S +++ + ++ + P+ L QG T S Sbjct: 733 AYADYLAMAIEQLAD-NQYQTIVLFNSLSVIEAVYQRL---IHRPIAGHKELLAQGVTGS 788 Query: 500 KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRL 559 ++ ++F +LL+ +SF+EG+D L +VI+ +LPF +P+ P+ KAR +L Sbjct: 789 AEKIAKRFAVGEQSLLLGAASFFEGIDYPDRLLEIVILTRLPFDAPEAPITKARYRQIQL 848 Query: 560 RGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 GGDPF E LP A++ L+Q GRLIR DRG +I D R + YG SLP Sbjct: 849 SGGDPFTEDALPRAILRLRQSFGRLIRTETDRGAFIILDPRFITTAYGKKMQKSLP 904 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 70/249 (28%), Positives = 112/249 (44%), Gaps = 25/249 (10%) Query: 7 PDGQLAKAI---PGFKPREPQRQMAVAV-TQAIEKGQPLVVEAGTGTGKTYAYLAPA--- 59 P +LAK P ++ R+ Q +M A+ T A + PL +EAGTG GKT YL P Sbjct: 236 PATELAKKHLLQPRYRFRKAQAKMMDAIFTHAQKTEIPLFIEAGTGLGKTLGYLLPYAYL 295 Query: 60 LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLER----LEQQ 115 ++K++++T + LQ QL ++ +P + L T LK +YL L + L Q+ Sbjct: 296 ATPEQKLVVATSTLVLQTQLITQAIPELDALLGRTLPTVELKSPQHYLDLNKFAASLHQE 355 Query: 116 ALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 G Q+L +L+ W QT GD+ + + + + D P Sbjct: 356 ---GPTRQTQLLQMKLLV--WLTQTTTGDLDELHLTTYRAPLFAEIRHSGDVGTPFINPF 410 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIP-EADVMIFDEAHQLPDIA 234 Y F + + K DA VVVV +H FL S + +P + ++ DEA D Sbjct: 411 YTFDFYRRLQAKLADA-VVVVTNHAFL-------SRHADTLPFKRPFLVVDEAQHFADNT 462 Query: 235 SQYFGQSLS 243 + F + ++ Sbjct: 463 AAAFARRVA 471 >UniRef50_B8HIV9 Helicase c2 n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HIV9_ARTCA Length = 749 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 180/702 (25%), Positives = 283/702 (40%), Gaps = 120/702 (17%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKK---- 65 +L+ IP R Q + + AI + A TG GK+++ LAPA+ A K Sbjct: 11 RLSTGIPTADARPGQVALLDDIEAAIRATGHVCGVAPTGVGKSFSLLAPAMVAAAKYDQR 70 Query: 66 VIISTGSKALQDQLYSRDLPTVSKAL-KYTGN---VALLKGRSNYLCLERL----EQQAL 117 IIST S AL Q+ +D P + A K TG VA+LKG SNY+C + EQ Sbjct: 71 TIISTESLALLSQILLKDAPVAAAACEKVTGTRPKVAVLKGFSNYVCSQSARDAAEQLTD 130 Query: 118 AGGDLPV--QILSDVILLRSWSNQTVDG---DISTCVSV-----------AEDSQA---- 157 G P + S + L + N +DG D + V + A D Q+ Sbjct: 131 TVGQRPSLPSLRSKLKRLANQKNVFLDGRPFDAANGVPLLLWALSLAADQAGDKQSYEGV 190 Query: 158 -----WPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLAD------MV 206 W V+ C+G CP++ C AR KA +AD+VV NH + ++ Sbjct: 191 TTPELWDAVSVGPSECIGDTCPIFDLCKPRAARAKAAEADIVVTNHSMLAVQAAKGVPVI 250 Query: 207 VKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQ 266 + GE +++ DEAH LP +S+ ++ L K ++ Sbjct: 251 IGNKTLGEF----HIIMIDEAHALPANVRSAGASEVSAAAVMSLTKSVSRTLDESDPAVG 306 Query: 267 QLQKCADRLAQSAQDFRLQLG---EPGYRGNLRELLANPQIQRAFLLLD---------DT 314 +L K + LA +D ++ +PG ++E A+P +++ D Sbjct: 307 RLIKEGNALAIELEDELAEMAKYTKPGEVCKIKE-TADPVETTGDMMIGWARSVKNALDG 365 Query: 315 LELCYDV-----AKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYS------YWYEC 363 + ++ AK GR A + L+R R E P + YW Sbjct: 366 VSKSKNIQSKLKAKRLAGRLDAFIGAVGQVKLHRIGTARWIEQKTPPANAKVQTPYWCAN 425 Query: 364 TSR-------HFTLALTPLSVADKFKELMAQK-------------PGSWIFTSATLSVND 403 S L P+ V ++ + + A K P + I SATL Sbjct: 426 ASPVNISGLLQANLWTAPVMVDEEDEMVQAMKEAGEPIEEETETYPMTVIAVSATLP--- 482 Query: 404 DLHHFTSRLGIEQAESLLLPSPFDYSR-QALLCVLRNLPQT-------NQPGSARQLAAM 455 F ++G+ AE++ PSPFD + +LL + + P+ +PG+ + Sbjct: 483 --SRFGYQVGL-TAENVAYPSPFDKAYDDSLLYIPKLTPEEIPEMFPGWRPGTKGKFNGA 539 Query: 456 LR---------PIIEANNGRCFMLCTSHAMMRDLAEQFRATMT--LPVLLQGET-SKGQL 503 L ++EAN G +L + + A R V Q + S QL Sbjct: 540 LHQAWATKKNVELVEANMGSALILSANSTAGKAYAAALRRAAKGRWNVYSQWDGLSTQQL 599 Query: 504 LQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSP---DDPLLKARMEDCRLR 560 + ++LV T SF GVD +G T SLV ID++P + DD ++A M+ ++ Sbjct: 600 TNLWRDDVKSVLVGTKSFMTGVDAKGRTCSLVTIDRIPRAAGNPVDDARVEAIMDALQIG 659 Query: 561 GGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 V + DA + L+Q +GRLIR D G+ I D R++ Sbjct: 660 KWAADTYVYVSDAALLLEQALGRLIRSVSDFGMAAILDPRML 701 >UniRef50_C5SK23 Helicase c2 n=2 Tax=Caulobacteraceae RepID=C5SK23_9CAUL Length = 986 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 85/257 (33%), Positives = 122/257 (47%), Gaps = 28/257 (10%) Query: 25 RQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKKKVIISTGSKALQDQLY 80 R+M A A E+ L++EAGTGTGKT YL+P A +A+ +V IST +KALQ Q+Y Sbjct: 253 REM-FAPKWASEQPNMLLLEAGTGTGKTLGYLSPSRLWAEKAQGRVWISTYTKALQKQIY 311 Query: 81 SRDLPTVSKALKYTGNVALLKGRSNYLCL----ERLEQQALAGGDLPVQILSDVILLRSW 136 + + VA+ KGR NYLCL ERL G+ V L ++ S Sbjct: 312 NDTRALFDTEGERENKVAIRKGRENYLCLLNWQERLAPLTQGPGEAIVAALVARWIVYSR 371 Query: 137 SNQTVDGDISTCV-SVAEDSQAWPLVTSTN--------DNCLGSDCPMYKDCFVVKARKK 187 V GD T + S+ A + + N C+ S CP Y+ CFV K+ +K Sbjct: 372 DGDIVGGDFPTWLPSLLPAGSAAAMFGALNPANLVDRRGECIYSACPHYRTCFVEKSIRK 431 Query: 188 AMDADVVVVNHHLFLA-------DMVVKESGFGELIPEA---DVMIFDEAHQLPDIASQY 237 A A +++ NH L +A + E G + PEA ++FDE H + + A Sbjct: 432 AKSAQIIIANHALVMAQAAYDLREAAKAEQGEATMEPEAPGLSRLVFDEGHHVFEAADGA 491 Query: 238 FGQSLSSRQLLDLAKDI 254 F LS + +L + I Sbjct: 492 FSSELSGFEAYELRRWI 508 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 69/206 (33%), Positives = 102/206 (49%), Gaps = 25/206 (12%) Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 A+SL + SPFDY QA L V+ ++P+ + R +A+ ++ + A G L T+ Sbjct: 775 AKSLRIASPFDYEAQARLFVVTDVPRDD----PRAVASAMKALFLAAGGGGLGLFTAIRR 830 Query: 477 MRDLAEQ-FR----ATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDT 531 ++ + EQ FR A ++L L+ F S ++ L+ T + +GVDV G Sbjct: 831 LKAVYEQLFRPLGEAGISLYAQHVDPLDVSDLISVFRSERHSCLLGTDAVRDGVDVPGQA 890 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVI--TLKQGVGRLIRDAD 589 L L+ D++P+ P D L KAR G +D DA++ L Q GRLIR AD Sbjct: 891 LRLIAFDRIPWPRP-DALHKARRAHF---GAKLYD-----DALVRAKLAQAFGRLIRRAD 941 Query: 590 DRGVLVICDNRLVMRPYGATFLASLP 615 DRGV V+ D+ R ASLP Sbjct: 942 DRGVFVMLDSAAPTR-----LFASLP 962 >UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E9B0_9LACO Length = 968 Score = 110 bits (276), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/222 (31%), Positives = 111/222 (50%), Gaps = 20/222 (9%) Query: 424 SPFDYSRQALLCVLRNLPQTNQPGSARQLAAML----RPIIEANNGRCFMLCTSHAMMRD 479 S FDY+ QA + P + S + A L IIE + + +L S + D Sbjct: 742 SEFDYAHQARAVFATDSPDLSSMLSKAEYHAYLTDALSDIIEKTSLQTLVLFNS---LED 798 Query: 480 LAEQFRA------TMTLPVLLQG-ETSKGQLLQQFV-SAGNALLVATSSFWEGVDVRGDT 531 + + +L QG + +L ++FV ++ ++L+ SFWEG+D+ D Sbjct: 799 IEAVYNGLSIRGLNKKREILAQGVNGTPEKLKKRFVLTSSKSILLGAGSFWEGIDLPEDK 858 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 L L++I +LPF SPD + K R + + +G +PF V LP+A + +QG GRLIR DD Sbjct: 859 LELLVITRLPFQSPDSLINKVRYRNVQAKGHNPFSAVSLPEAALKFRQGFGRLIRTKDDH 918 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAPRT-----RDIARAVR 628 G+L + D+R+V + Y F +LP R +DI +R Sbjct: 919 GILAVLDSRIVNKRYAHEFTDTLPKDLRIDRVEMKDIPEIIR 960 Score = 65.9 bits (159), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 57/223 (25%), Positives = 98/223 (43%), Gaps = 13/223 (5%) Query: 21 REPQRQMAVAVTQAIEKGQP-LVVEAGTGTGKTYAYLAP-ALRAKK--KVIISTGSKALQ 76 R+ Q +M + + + L+V+A TG GKT YL P A +A++ ++ST + AL Sbjct: 289 RKEQAKMMNDIYEHFNGDEKMLLVQAPTGMGKTLGYLVPGAYQAQEGASTVVSTSTTALL 348 Query: 77 DQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSW 136 DQ+ +P + K + + ++KG +Y+ LE+ + ++L IL SW Sbjct: 349 DQIVKESVPLLKKIVPFDFTYEVMKGSGHYIDLEKFSHTLKIPMNNQTRLLQMRIL--SW 406 Query: 137 SNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVV 196 QT GD+ +Q + ++ L Y FV + AD V Sbjct: 407 LWQTTTGDMDELRLTTYRAQLFKMIKHAGVGSLSDKSAFYGLDFVRLRDVRVKFADFVFT 466 Query: 197 NHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 NH +V+ + E+ + +I DEA +P +A + G Sbjct: 467 NH-----SYLVRHA--EEIGKKKANLILDEAQNIPSVAMEQGG 502 >UniRef50_C8NF23 DnaQ family exonuclease/DinG family helicase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NF23_9LACT Length = 875 Score = 109 bits (273), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 141/629 (22%), Positives = 250/629 (39%), Gaps = 74/629 (11%) Query: 19 KPREPQRQMAVAVTQAIEKGQPL-VVEAGTGTGKTYAYLAPALRA---KKKVIISTGSKA 74 K + QR++ + + +E+ +P+ +EA G+GKTYAYL AL + + I T + Sbjct: 250 KDNDSQRKIIKKILETLEEEEPIHFIEAPPGSGKTYAYLLAALEKATNQNPIWIVTSNLL 309 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQ-ALAGGDLPVQILSDVILL 133 LQ QLY + + ALK + +KG+ NY+ LE + + D ++ V+ L Sbjct: 310 LQQQLYEDSVLPIVSALKIKNPIVSIKGQRNYIDLEAFSYKISQLKNDKSPRVSLSVMGL 369 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADV 193 W +T GD+S C V S W D C+ + + + KA + +++ Sbjct: 370 VVWITETETGDLSECNQVLYQSSLWK------DICVKENSKK-ESLYWTKAVQSVQKSNI 422 Query: 194 VVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKD 253 VV N H FL S +++ DE Q QY S+ L L + Sbjct: 423 VVTN-HAFLIHYASTMS-----YQTKPIVLLDEVQQFEHSLEQYGTVSIKFSNLFLLQQL 476 Query: 254 ITIAYRTEL----KDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN-LRELLANPQIQRAF 308 + Y + KD + L + +R D E RGN L+E + Sbjct: 477 WSDYYLNSMTNFSKDEEHLSRTINRKLLEICDLYETWFEELNRGNYLKESIVFTN----- 531 Query: 309 LLLDDTLELCYDVAKLSLGRSAL-----LDAAFERATLYRTRLKRLKEINQPGYSYWYEC 363 ++ +E + + +S + L E+ +L+ ++ L+E+ + E Sbjct: 532 ---EEWIETIHHEMIRAFTKSIIQLMNYLQENSEKTSLFENSIQLLQEMKDSLLKF-QES 587 Query: 364 TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSR----LGIEQAES 419 +F + D++ + M + SV +HF +GI Sbjct: 588 NHSYFVIER-----KDQYGQEMIE-------VLRVDSVTHVFNHFKKTIKKLIGISATIP 635 Query: 420 LLLPSPFDYSRQALLCVL--------------RNLPQTNQPGSAR---QLAAMLRPIIEA 462 P +D Q L ++ +L S + Q+A ++ I E Sbjct: 636 TFTPLFYDLKAQENLTIMDSKVNSHAHHIFIPNDLVSVTAASSNQYHEQIAYCIQQIYER 695 Query: 463 NNGRCFMLCTS-HAMM--RDLAEQFRATMTLPVLLQGETSKGQLLQ-QFVSAGNALLVAT 518 N GR +L S A+M +L + + +L Q + G+ +Q +F +++L+ Sbjct: 696 NGGRMLVLMHSIEALMAVEELMVNYCKRNHIELLAQKGSQLGRKIQRRFQEKSDSILLGV 755 Query: 519 SSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLK 578 SFWEG D G +++ ++I KLPF +P + + + + F + + ++ L Sbjct: 756 YSFWEGFDSGGVSINSLVITKLPFPNPVTTHQQIVQLEMKEQNRSYFAQYSIKMMLLQLY 815 Query: 579 QGVGRLIRDADDRGVLVICDNRLVMRPYG 607 QG+GR R + I D R + Y Sbjct: 816 QGLGRFSRPTQKNAEIWILDVRASISKYS 844 >UniRef50_Q1EM22 ATP-dependent helicase DinG n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM22_9BACT Length = 850 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 72/247 (29%), Positives = 128/247 (51%), Gaps = 30/247 (12%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----L 60 F+ G L ++ G++ R+ Q A+ + ++IE+ L++E GTGTGK+ AYLAP + Sbjct: 161 FSEGGLLQDSMKGYEFRQEQFMTALEIAESIERDSNLMIEVGTGTGKSIAYLAPVAYACI 220 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGN-----VALLKGRSNYLCLERL-EQ 114 + ++ST ++ LQDQL+ +D+ + LK N V+++KGR YLC +L E Sbjct: 221 STMNQAVVSTRTRILQDQLFKKDV----EILKTFPNLDDLRVSVMKGRERYLCARKLFEV 276 Query: 115 QALAGGDLPVQILSDV---ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGS 171 LA + + +S IL+ WS T +GD+ + + E+ + +++ +C Sbjct: 277 VNLALNKMLDEEMSKELSGILI--WSMITGEGDLDP-LPIKEEMRR--MISGNRFDCTRR 331 Query: 172 DCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKES--------GFGELIPEADVMI 223 CP ++ C R+ A +D+V+ NH ++ ++ S G L+P ++ Sbjct: 332 LCPFFEICPYYVQRENAKSSDIVITNHSFLFSEANIRLSDGDAEEREDIGTLLPRFKYLV 391 Query: 224 FDEAHQL 230 DEAH+L Sbjct: 392 VDEAHEL 398 Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 78/245 (31%), Positives = 125/245 (51%), Gaps = 14/245 (5%) Query: 393 IFTSATLSV----NDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCVLRNLPQTNQPG 447 IF SATL V +D ++ LG E++ L + FDY++Q V +LP P Sbjct: 590 IFISATLWVYSRGSDGFNYARRILGTSSNNEAVRLGTSFDYTQQLKFFVPVDLPDYF-PN 648 Query: 448 SARQLAAMLRPIIEANN---GRCFMLCTSHAMMRDLAEQFRATM-TLPVLLQG-ETSKGQ 502 S L + + A N G +L TS+ M+ + + + + +Q E S Sbjct: 649 SLTYLESASDITLNALNIVGGGSMVLFTSYEDMKWTLSRISGRLGDMSIHIQDREDSPTT 708 Query: 503 LLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGG 562 +L V++ +++ +FWEGVD+ G+ L L+I+ KLPF PD+PL++AR++ R Sbjct: 709 ILADHVNSEKSVIFGARAFWEGVDLPGEQLRLLIVYKLPFERPDEPLIEARIKHYGKRSF 768 Query: 563 -DPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV--MRPYGATFLASLPPAPR 619 + ++ P + +QG+GRLIR +D GV+++ D R+V R Y LASLP Sbjct: 769 VEGMNKYYYPKMITAFRQGLGRLIRTRNDHGVVIVIDKRIVDPNRVYSKKLLASLPAGTN 828 Query: 620 TRDIA 624 + IA Sbjct: 829 VQAIA 833 >UniRef50_B6IWJ8 DNA helicase, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IWJ8_RHOCS Length = 946 Score = 105 bits (261), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 84/244 (34%), Positives = 113/244 (46%), Gaps = 35/244 (14%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEK----GQPLVV--EAGTGTGKTYAYLAPAL--- 60 +L A +PR Q A AVT A G P +V EAGTG GKT YLAPA Sbjct: 218 ELVAAGSNAEPRPQQSDYASAVTHAFTPRDLPGAPNLVLAEAGTGVGKTLGYLAPATLWA 277 Query: 61 -RAKKKVIISTGSKALQDQL---YSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 + K V IST ++ LQ Q+ R P K + V + KGR NYLCL LE+ + Sbjct: 278 EKNKGPVWISTYTRQLQHQIDKELDRLHPDPEKKAR---KVVIRKGRENYLCLLNLEEAS 334 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL----------VTSTND 166 LA +P Q+ + L+ W+ T DGD+ D W + + Sbjct: 335 LAAQTMP-QVAVAMGLMARWAAVTRDGDMQGG-----DFPGWLVDLLGRGRTLGLADRRG 388 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDE 226 C+ S CP Y+ CF+ K+ ++A AD+VV NH L MV G G+ +FDE Sbjct: 389 ECVFSACPHYQKCFIEKSVRRARRADIVVANHALV---MVQAALGGGDDAYVPSRFVFDE 445 Query: 227 AHQL 230 H + Sbjct: 446 GHHV 449 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 89/319 (27%), Positives = 140/319 (43%), Gaps = 53/319 (16%) Query: 320 DVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTS-----------RHF 368 D SL R A ++ A +R L+ L P + W+ RH+ Sbjct: 613 DAVSRSLKRRAAMEVAG-----WRQMLQELGGETPPAFVDWFGIERIDGRDVDVGMYRHW 667 Query: 369 TLALTPLSVADKFKELMAQKPGSWIFTSATLS-----VNDDLHHFTSRLGI----EQAES 419 P + + + AQ G + TSATL+ V D R G + A Sbjct: 668 VDPTVPFAAS-----VGAQAHGM-VVTSATLTDGTGDVEQDWQAAQQRTGAVHLGKPALR 721 Query: 420 LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 +PSPFDY+RQ + V+ ++ + + Q+AA R + A G L T+ + ++ Sbjct: 722 ATVPSPFDYARQTRVLVVTDVRKDD----LSQVAAAYRELFLAAGGGGLGLFTAISRLKA 777 Query: 480 LAEQFRATMT---LPVLLQGETSKG--QLLQQFVSAGNALLVATSSFWEGVDVRGDTLSL 534 + E+ + +P+L Q L+ F +A L+ T + +GVDV G +L L Sbjct: 778 VHEKIALPLEQAGIPLLAQHLDGMDVPTLVDIFRGEHDACLLGTDAVRDGVDVPGRSLRL 837 Query: 535 VIIDKLPFTSPDDPLLKARME--DCRLRGGDPFDEVQLPDAVIT---LKQGVGRLIRDAD 589 ++ D++P+ PD L +AR E D + R + D +IT L+Q GRL+R AD Sbjct: 838 IVFDRVPWPRPDI-LHRARREYFDRKAR-------ARRHDDMITRLRLRQAFGRLVRRAD 889 Query: 590 DRGVLVICDNRLVMRPYGA 608 D GV V+ D + R GA Sbjct: 890 DTGVFVLLDPMMPSRLRGA 908 >UniRef50_UPI0001C41D99 Rad3-related DNA helicase n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41D99 Length = 1124 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 147/606 (24%), Positives = 246/606 (40%), Gaps = 107/606 (17%) Query: 8 DGQLAKAIPGFKPREPQRQMAVAVTQAIEKG-QPLVVEAGTGTGKTYAYLAPALRAKKKV 66 D ++ P K R Q + + +AIEKG + +V+EAGTGTGK+ A A Sbjct: 20 DPKVRSYFPFAKARPQQLETISEIHEAIEKGYKYIVLEAGTGTGKS-AIAATLAMCYGDA 78 Query: 67 IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQI 126 I T +K LQ Q Y++D + AL+KGRSN+ CL+ +E+ D+ + Sbjct: 79 YILTMTKQLQRQ-YTKDFEDY--------DFALVKGRSNFDCLKYMEEAIEESCDMGRCV 129 Query: 127 LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARK 186 L C + + L C CP + R Sbjct: 130 LEG----------------HKC---SYKVNQFNLYKKDPGEC----CPYFH------QRA 160 Query: 187 KAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQ 246 A+++D+V+ N+ A++ F ++I DEAH L + Sbjct: 161 IALNSDIVITNYSYLFAEL-----NFNNDFKAKRLLICDEAHNLES-------------K 202 Query: 247 LLDLAKDITIAY-RTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQ 305 ++DL I++ + R +LKD + + L L E GY L+ I+ Sbjct: 203 IMDL---ISLEFTRRQLKDEVGINLSKETLKD--------LDEKGYTSWLQ------FIK 245 Query: 306 RAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKE------INQPGYSY 359 R D + K +LG+ L R+ + RL+ K I+ + Sbjct: 246 RVCERYGDKSK----ETKKALGKRKSL-TLHRRSENLKRRLEDFKRFSNYIAIDPDNWIM 300 Query: 360 WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE- 418 Y+ S+ L+ P+ + E++ + IF S T+ + H F LGIE+ E Sbjct: 301 DYDPHSQ--KLSFKPIRIDKYASEVLLKHADVCIFMSGTIL---NHHQFAKWLGIEEDEI 355 Query: 419 -SLLLPSPFDYSRQALLCVL-RNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 + SPFD R + ++ N SA++ ++R I+E +NG ++ H + Sbjct: 356 YPIRRKSPFDIRRNPIRTYSGFDMTYRNLGSSAKRSVPVIREILERHNGEKGII---HTV 412 Query: 477 MRDLAEQFRATMTLPVLLQGETS-KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 E + + P LL ET + ++L++F + L++ + S EGVD+ GD Sbjct: 413 SYQCKEFLKKELNNPRLLDHETKDREKVLEKFKKSDEPLVLISPSMNEGVDLPGDLCRFQ 472 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 II K+P+ P + + + R + + + Q I L Q GR +R DD Sbjct: 473 IIYKIPY-----PNISDKQTNIRRKKEKIWYDYQ---TAINLVQTYGRGMRSEDDYCTTY 524 Query: 596 ICDNRL 601 D+R+ Sbjct: 525 FIDSRI 530 >UniRef50_Q2NCB3 DNA helicase n=10 Tax=Sphingomonadales RepID=Q2NCB3_ERYLH Length = 916 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 87/269 (32%), Positives = 126/269 (46%), Gaps = 48/269 (17%) Query: 8 DGQ--LAKAIPG-FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---- 60 DGQ AK + G F PRE ++Q V L+ +AGTG GKT YLAPA Sbjct: 199 DGQRAYAKDVGGVFAPREKRKQPHV-----------LLAQAGTGIGKTLGYLAPASLWAD 247 Query: 61 RAKKKVIISTGSKALQDQLYS---RDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL 117 +A+ V +ST +K LQ QL R P S+ + V + KGR NYLCL LE AL Sbjct: 248 KAQGTVWVSTYTKNLQRQLRGESRRAWP--SRRADGSRPVVVRKGRENYLCLLNLED-AL 304 Query: 118 AGG--DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAW----------PLVTSTN 165 GG P + L+ W+ + DGD+ + D W +T Sbjct: 305 QGGFAGRPAVLAQ---LVARWAAYSADGDM-----IGGDLPGWLGTLFRKRGITALTDQR 356 Query: 166 DNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFD 225 C+ + CP Y+ CF+ +A + + AD+V+ NH L M+ G P ++ FD Sbjct: 357 GECIYAGCPHYRKCFIERATRASAQADLVIANHALV---MINAARGRHHGQPPTRIL-FD 412 Query: 226 EAHQLPDIASQYFGQSLSSRQLLDLAKDI 254 E H + D A F +L+ ++ ++L + I Sbjct: 413 EGHHVFDAADSTFAAALTGQEAIELRRWI 441 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 76/299 (25%), Positives = 126/299 (42%), Gaps = 35/299 (11%) Query: 342 YRTRLKRLKEINQPGYSYWYEC---TSRHFTLALTP--LSVADKFKELMAQKPGSWIFTS 396 + + L RL P + W+ +R F + + L F ++ + + TS Sbjct: 599 WESLLARLGGPADPDFVDWFAVDRNEAREFDIGIHRHWLDPMKPFAHVVLEPAHGVMLTS 658 Query: 397 ATLS----VNDDLHHFTSRLG---IE-QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGS 448 ATL+ +D + G IE Q ++ SPFDY+ +A + ++ ++ + G Sbjct: 659 ATLTDRGETGEDWQGAIAASGAPHIELQPKTSSAQSPFDYASRAEVLIVTDIKR----GD 714 Query: 449 ARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQG--ETSKGQL 503 LA I+EA G L T+ +R + + A LP+ Q G L Sbjct: 715 LAALAGGYARIVEAAGGGVLGLFTAIKRLRAVYGRIADRLARAGLPLYAQHVDPIDTGTL 774 Query: 504 LQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGD 563 F A L+ T + +GVDV G++L V+++ +P+ P L +AR GG Sbjct: 775 TDIFRDDRKASLLGTDALRDGVDVPGESLRCVVLEAVPWPRPTI-LHRARRA---ANGGG 830 Query: 564 PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPA-PRTR 621 +D+ + L Q GRLIR +D G ++ + R L++ PP P TR Sbjct: 831 AYDDRLI---RARLAQAFGRLIRSREDAGHFIVLSSAFPSR-----LLSAFPPGTPVTR 881 >UniRef50_B4U7P2 Helicase c2 n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U7P2_HYDS0 Length = 730 Score = 102 bits (255), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 83/261 (31%), Positives = 126/261 (48%), Gaps = 41/261 (15%) Query: 17 GFKPREPQRQMAVAVTQAI-------EKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIIS 69 G++ R+ Q +M V + I E+ +++EA TG GK++ YL P + K+ IIS Sbjct: 11 GYERRKSQEKMFSIVEECINKEDFDDEEQNVVLIEAPTGVGKSFGYLLPIIEHGKQAIIS 70 Query: 70 TGSKALQDQLYSRDLPTVSKALK-YTG---NVALLKGRSNYLCLER-------LEQQALA 118 T +K LQ+QL RDL +S K Y G N +LKG++NYLCL+R L+Q + Sbjct: 71 TKTKILQEQL-RRDLEHLSSIRKNYFGKGINYLILKGKANYLCLDRFYDKENELKQTTIF 129 Query: 119 GGDLPVQILSDVILLRSWSNQTVDGDIS-TCVSVAEDSQAWPLVTSTNDNC---LGSDCP 174 G + ++I W DGDI T + + + W + + C CP Sbjct: 130 GKVSLANTIRELIESSGW-----DGDIEFTNIPL----EVWTDINIDENYCDSNYRKSCP 180 Query: 175 MYKDCFVVKARK-KAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDI 233 KDCF K K K AD++V+NH L +V+K F + E +++ DEAH+L + Sbjct: 181 YLKDCFYYKKLKDKEKLADILVINHSL----LVLK--NFDD--TEEKILVIDEAHELDEA 232 Query: 234 ASQYFGQSLSSRQLLDLAKDI 254 + S L+ L I Sbjct: 233 LVKSLTSGFSVISLMRLVASI 253 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 107/248 (43%), Gaps = 43/248 (17%) Query: 393 IFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQL 452 I TSATL + DL T+ GI E L F+Y + +++N+ N+ +L Sbjct: 488 ILTSATL--DKDLIELTT--GI-SGEYHSLEHVFNYEDVSF--IIKNIVPKNKDLWKEEL 540 Query: 453 AAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGN 512 LR + + +L TS+ M + + ++ Q T+ + ++ + Sbjct: 541 INSLR-YLRTFYSKVLVLLTSYEQMEYIPKD------EDIIFQNTTTLRKAIEMVENGDK 593 Query: 513 ALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARM------------------ 554 +LV S W G+D++GD +++ KLPF SP+DP+ RM Sbjct: 594 NVLVGVDSVWTGIDLKGD--KGLLMAKLPFDSPEDPINYHRMRYFKKHNKATTSHFGSME 651 Query: 555 --------EDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPY 606 E C D F ++ A + KQG GRL+R D+G ++ICD+R+ Sbjct: 652 QAMAHSSSEKCLKHTMDGFIYMR-KKAFLQFKQGFGRLVRSKKDKGTIIICDSRIWRYEE 710 Query: 607 GATFLASL 614 F+ SL Sbjct: 711 FINFIKSL 718 >UniRef50_C5U5Q1 Helicase domain protein n=1 Tax=Methanocaldococcus infernus ME RepID=C5U5Q1_9EURY Length = 630 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 153/649 (23%), Positives = 260/649 (40%), Gaps = 122/649 (18%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---RAKKKVI 67 ++K P REPQ++M +++ +I + L+VEA TG GKT AYL PA+ K+++ Sbjct: 7 VSKKFPYSTIREPQKKMMLSIYNSIINRKHLIVEAPTGVGKTLAYLLPAIYFAEQGKRIL 66 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 I T + Q +++ +L ++ LK V+ L G NY C + L ++A Sbjct: 67 ILTETIDQQKRIFD-ELNRLNHNLK----VSYLMGIRNYTC-KTLNRKA----------- 109 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM----YKDCFVVK 183 + + ++ + C + L CP+ YK C Sbjct: 110 NRIFCKINYRCRYRPNKKPICFCGMRKIKVGSLYY----------CPLCVCEYKKC---- 155 Query: 184 ARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLS 243 + +++ +++VV+N+ +F E + D++I DEAH+L D + ++ Sbjct: 156 -KLESLVSNIVVMNNTMFFYS--------KEDCRDFDIIIVDEAHKLEDSIRRALTIEIN 206 Query: 244 SRQLLDLAKDITIAYR-TELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANP 302 L++ K + Y + L+ D L + L YR Sbjct: 207 PDTLIERLKYMAFHYSPSVLRKRMTHDNVFDLLKNYLDGVDIDL----YR---------- 252 Query: 303 QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKR-------------- 348 RA + D L+ Y++ K L S++L+A ++ L L+ Sbjct: 253 ---RALIYDDGELDSFYNLTKSIL--SSILNAYYKLIKLKEKILEFEENEEIKEEIKFDL 307 Query: 349 ------LKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSA----- 397 L E+N + F ++ L ++D + ++ + S I+ Sbjct: 308 DFKDICLVELNFINKVKSSDLLFNEFFENISKLRLSDNY--VLYRSGNSLIYEPVFVNNY 365 Query: 398 --TLSVNDDLHHFTSRLG----------IEQAESLLLPSPFDYSRQALLCVLRNLPQTNQ 445 TL N + H ++ +G +E A L L SPF R+ ++ + + Sbjct: 366 LKTLYGNAVVIHCSATIGSFKSHAHRTGLEDANFLRLESPFPMDRREIIALKDGANMKYE 425 Query: 446 PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVL-----------L 494 + ++ ++EA N +L S + + + + L + Sbjct: 426 VKDREKANEIILKMLEAINDNTLILFKSFEDLENFYNYLKLRIDKLNLRNKKIHVYERGM 485 Query: 495 QGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARM 554 GE +K +L ++F G +L+AT F EGVD G+TL VIID LPF P PLLK Sbjct: 486 SGEEAK-ELQERFKKEG-GILLATGRFSEGVDFPGETLVGVIIDSLPFPVP-TPLLKKER 542 Query: 555 EDCRLRGG--DPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 E R G + F TL Q +GRLIR D GV+VI D R Sbjct: 543 EILMKRVGSWEAFLLTSFDRMAKTLVQMIGRLIRTEKDYGVVVIQDKRF 591 >UniRef50_B5ZKV6 Helicase c2 n=11 Tax=Rhodospirillales RepID=B5ZKV6_GLUDA Length = 1002 Score = 100 bits (250), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 79/242 (32%), Positives = 111/242 (45%), Gaps = 36/242 (14%) Query: 37 KGQPLVV--EAGTGTGKTYAYLAPAL----RAKKKVIISTGSKALQDQL---YSRDLPTV 87 +G P +V EAGTGTGKT Y+APA R V IST ++ LQ Q+ SR P Sbjct: 238 RGDPHMVLAEAGTGTGKTLGYVAPASLWAERNGGAVWISTYTRHLQRQIEGELSRLYPDP 297 Query: 88 SKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL--PVQILSDVILLRSWSNQTVDGDI 145 + ++ V L KGR NYLCL +E+ G P + + L+ W+ T DGD+ Sbjct: 298 AVRRRH---VVLRKGRENYLCLLNMEEAVNMAGSRGGPSGAIIGLSLVARWAGATADGDL 354 Query: 146 STCVSVAEDSQAW----------PLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVV 195 + D W + C+ CP Y+ CFV + ++A +AD+V+ Sbjct: 355 -----LGGDLPGWFGDLFGRGLLAGIADRRGECIHGACPHYQRCFVEHSIRRAREADLVI 409 Query: 196 VNHHLFLADMVVK----ESGFGE-LIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 NH L +A ESG E IP +FDE H + D A F LS + +L Sbjct: 410 ANHALVMAQAAWHAMDGESGADEDNIPTR--YVFDEGHHVMDAADSAFSTELSGLEAAEL 467 Query: 251 AK 252 + Sbjct: 468 RR 469 Score = 64.3 bits (155), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/186 (29%), Positives = 90/186 (48%), Gaps = 13/186 (6%) Query: 424 SPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQ 483 SPFDY RQ+ ++ ++ + LA R + +A G L T+ + +R + ++ Sbjct: 780 SPFDYRRQSRAFIVNDVAHDD----IGALAGAYRTLFQAAGGGGLGLFTAISRLRAVHQR 835 Query: 484 FRATMT---LPVLLQG--ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIID 538 + +P+ Q L+ F S N+ L+ T + +GVDV G +L LV+ + Sbjct: 836 LSRPLEDAGIPLYAQHVDGMDNATLVDIFRSEANSCLLGTDAMRDGVDVPGRSLRLVVFE 895 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 ++P+ PD + R R + G+ D + A + L+Q GRLIR + DRGV V+ D Sbjct: 896 RVPWPRPDILHRERRTHLSRGQPGEYDDRI----ARLRLRQAFGRLIRSSSDRGVFVLLD 951 Query: 599 NRLVMR 604 R R Sbjct: 952 RRAPSR 957 >UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38X67_LACSS Length = 944 Score = 99.8 bits (247), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 71/232 (30%), Positives = 117/232 (50%), Gaps = 10/232 (4%) Query: 394 FTSATLSVNDDLHHFTSRLGIEQAESLL---LPSPFDYSRQALLCVLRNLPQTNQPGSA- 449 T ATL+VN + G + ++L L SPF + +QA + + P + + Sbjct: 688 LTGATLAVNGHFDYLKREFGFTEEQALQTKKLRSPFRFKQQARFYIAEDGPVQKELTPSD 747 Query: 450 --RQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF-RATMTL--PVLLQGET-SKGQL 503 +Q+AA + +I N + +L ++ + + RA ++L VL QG T S ++ Sbjct: 748 YHQQVAAQVMTLIANNPHQTLILFNANQTLEQVYYALGRAGLSLDREVLAQGITGSAEKI 807 Query: 504 LQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGD 563 ++F+ +++L+ATSSF GVD L +VI+ +LPF +P+ + R +G + Sbjct: 808 TKRFMLGHDSVLLATSSFVSGVDFPEAALEMVILVQLPFDAPNALQTRVRYAQLAAQGIN 867 Query: 564 PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 PF LP A I L+Q GRLIR +D G+ + D RL+ YG +LP Sbjct: 868 PFKAEALPKATIRLRQSFGRLIRTPNDHGLFICLDPRLLTTQYGQQMRRALP 919 Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/223 (26%), Positives = 104/223 (46%), Gaps = 19/223 (8%) Query: 16 PGFKPREPQRQMAVAVTQAIEKG--QPLVVEAGTGTGKTYAYLAPA---LRAKKKVIIST 70 P K R+ Q M + E +PL++EA TG GKT YL P + K++++T Sbjct: 256 PHLKWRKAQATMMDLIHDNFESETPEPLLIEAATGLGKTIGYLLPYSYRMSRDHKLVVAT 315 Query: 71 GSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA-LAGGDLPVQILSD 129 + LQ+Q+ ++ P + + + N A++K S+Y+ L R E L + +++L Sbjct: 316 STTLLQEQILTQAKPLLERLVGRQINAAVVKSASHYIDLHRFELSLRLPHKNRMIRLLQM 375 Query: 130 VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGS---DCPMYKDCFVVKARK 186 IL+ W QT GD+ + S P S L S P Y + F+ + Sbjct: 376 KILV--WLTQTTTGDLD---ELNLTSYKTPFFVSIQHRGLASLNPQAPFYHEDFLRRLTH 430 Query: 187 KAMDADVVVVNHHLFLADMVVKESGFGE----LIPEADVMIFD 225 + A+++V N H +LA ++ +G ++ EA M+F+ Sbjct: 431 RQQQAELLVTN-HAYLASHADEQQIWGPKPYLVLDEAQNMVFN 472 >UniRef50_A8URH3 ATP-dependent helicase (DinG family) protein n=2 Tax=Aquificaceae RepID=A8URH3_9AQUI Length = 644 Score = 98.2 bits (243), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 75/225 (33%), Positives = 115/225 (51%), Gaps = 34/225 (15%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQ 76 G+ RE Q + V +++G +VEA TGTGKT+AYL P + + +K IISTG+K LQ Sbjct: 14 GYDRRESQEKFIALVRDLLDEGGVKLVEAPTGTGKTFAYLIPLITSGQKAIISTGTKILQ 73 Query: 77 DQLYSRDLPTVSKALK-YTG---NVALLKGRSNYLCLERLEQQALAGGDLPVQILSDV-- 130 DQL RD+ ++ K TG + A++KG+ NYLC++RL ++ P + L DV Sbjct: 74 DQL-KRDIEFLTGHYKLLTGEDVSYAVIKGKGNYLCIDRLHKER-----PPAEELGDVPD 127 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC---LGSDCPMYKDCFVV-KARK 186 ++ W D +S+C +A + +D C S CP +C+ K + Sbjct: 128 LMETQWEG---DLTLSSCT-----PEAVSKINVDDDYCTPSYRSVCPYRSECYYWEKVKL 179 Query: 187 KAMDADVVVVNHHLF-LADMVVKESGFGELIPEADVMIFDEAHQL 230 + + ++VVNH L L D E V++ DEAH+L Sbjct: 180 REARSQILVVNHALLALKDFEN---------TEERVLVIDEAHEL 215 Score = 95.5 bits (236), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 69/228 (30%), Positives = 105/228 (46%), Gaps = 30/228 (13%) Query: 393 IFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQL 452 + TSAT+ D FT+ +G E L FDYS+ + N + ++ Sbjct: 421 LLTSATIDPED--IEFTTGIG---GEFYRLGHNFDYSKVTFIITNTNPKREGWEEKLKES 475 Query: 453 AAMLRPIIEANNGRCFMLCTSHAMMR------DLAEQFRATMTLPVLLQGETSKGQLLQQ 506 +R + E + +L T+ ++ D+A+Q GE S L+++ Sbjct: 476 YEDIRNLHE----KVLVLLTNRRHLKLFDGEGDIAKQ------------GEDSLNSLIER 519 Query: 507 FVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD 566 +L+ S W G+DVRG+ +++ KLPF SP+DP+ R+ R G DPF Sbjct: 520 IREGKIKVLIGLDSLWTGIDVRGE--KGILMSKLPFESPEDPVTYHRIRYLRSVGEDPF- 576 Query: 567 EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASL 614 E Q A I +QGVGRL+R D G +V+CDNR+ FL L Sbjct: 577 EYQRRKAFIKFRQGVGRLVRQKTDSGTIVLCDNRIWRYKEFINFLREL 624 >UniRef50_A7HQ70 Helicase c2 n=7 Tax=Alphaproteobacteria RepID=A7HQ70_PARL1 Length = 970 Score = 95.1 bits (235), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 79/261 (30%), Positives = 116/261 (44%), Gaps = 58/261 (22%) Query: 38 GQPLVV--EAGTGTGKTYAYLAPA----LRAKKKVIISTGSKALQ---DQLYSRDLPTVS 88 G P VV EAGTG GKT Y+APA R K V +ST +K LQ DQ SR P + Sbjct: 253 GAPNVVIAEAGTGIGKTIGYIAPASLWAARNKGTVWLSTYTKNLQRQLDQELSRLYPDPA 312 Query: 89 KALKYTGNVALLKGRSNYLCL----ERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGD 144 + + + KGR NYLC+ E ++ A+ GG + + +++ W+ + DGD Sbjct: 313 EKAE---KAVIRKGRENYLCMLNFAELADRAAMGGGAVAIGLVA------RWAKASRDGD 363 Query: 145 ISTCVSVAEDSQAW-----------PLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADV 193 + V D AW +T C+ + CP YK CF+ +A +KA A++ Sbjct: 364 M-----VGGDFPAWLAARLGGVTGRTGLTDRRGECVYTACPYYKKCFIERAIRKARRAEI 418 Query: 194 VVVNHHLFLADMVVKES-------------GFGELIPEADV-------MIFDEAHQLPDI 233 VV NH L + + ++ G EA +FDE H + D Sbjct: 419 VVANHALVMRQAALDQAMGPVAHRPVKAAEAAGNAEDEAPSGREALARFVFDEGHHIFDA 478 Query: 234 ASQYFGQSLSSRQLLDLAKDI 254 A F +LS + +L + I Sbjct: 479 ADGAFSATLSGLETAELRRWI 499 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 64/205 (31%), Positives = 98/205 (47%), Gaps = 25/205 (12%) Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 A + SPFDY +Q + V+R++ +T+ Q+A+ R + A G L T+ Sbjct: 748 ARRAFMASPFDYEKQVRIFVVRDVSRTD----INQVASAYRELFRAAGGGALGLFTAIHR 803 Query: 477 MRDLAEQF-----RATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDT 531 +R + E+ A + L L+ F + +A L+ T + +GVDV GD+ Sbjct: 804 LRAVHERIVTPLEEAGLELYAQHVDALDTATLVDIFRAERHACLLGTDAVRDGVDVPGDS 863 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAV--ITLKQGVGRLIRDAD 589 L +++ D++P+ PD L KAR E F + + D + + LKQ GRLIR A Sbjct: 864 LRMIVFDRVPWPRPDI-LHKARREQ--------FGKARYDDMLTRLRLKQAFGRLIRRAT 914 Query: 590 DRGVLVICDNRLVMR-----PYGAT 609 DRGV + D RL R P G T Sbjct: 915 DRGVFIALDARLPTRLTSAFPRGVT 939 >UniRef50_A0AE01 Putative DEAD/DEAH box helicase n=1 Tax=Streptomyces ambofaciens ATCC 23877 RepID=A0AE01_STRAM Length = 1992 Score = 94.7 bits (234), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 187/751 (24%), Positives = 301/751 (40%), Gaps = 150/751 (19%) Query: 11 LAKAIPG--FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA-----K 63 LA+ + G +PR Q+ M + ++G ++EA TGTGK+YA LA AL Sbjct: 373 LAQVVHGSRVEPRPAQQTMTTTLHDWTDRGVSGLLEAPTGTGKSYAVLAAALDWLAGGDS 432 Query: 64 KKVIISTGSKALQDQL------YSRDLPT---VSKALKYTGN----VALLK--------- 101 + +I+T +K LQ Q+ R LP V+ +K N AL K Sbjct: 433 RTAVIATYTKQLQSQMAKDIQDLERALPGILGVADLVKGKSNRLSLAALTKTLAEAPRRR 492 Query: 102 -----GRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQ 156 R+ + R + A+ L +++L+ +SW+ ++VD + Sbjct: 493 RSAGTARARFSQRSRFRELAVF---LALRLLAAKEPPQSWTARSVDPVDLPAFFTDYIGR 549 Query: 157 AWPLVTSTNDNCLGSDCPMYKDCFVVKAR--KKAMDAD-VVVVNHHLFLADMVVKESGFG 213 PL + G P + V ++++D+ +++ NH L L+ + Sbjct: 550 GLPLWLESLSQRDGDYGPAAGNPLTVHTDTVRESIDSHRLILANHALVLSHL----DDLR 605 Query: 214 ELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKD----ITIAYRTELKD----- 264 + PE +++ DEAH+L + A+ ++ + L L + I A+ K+ Sbjct: 606 AVGPEV-LLVIDEAHELENAATSALTVTVDHQDLEALLPEYQAWIADAHPGTAKEQAAAA 664 Query: 265 TQQLQKCAD--RLAQ-SAQDFRLQLGEPGYR-GNLRELLANP------------------ 302 L++ D RL + +AQ F Q G R G+ LA+P Sbjct: 665 IADLERLLDDERLPRLAAQAFDAQAKGVGVRIGSRATTLASPYAGTSGTRHTRRLSLVLE 724 Query: 303 QIQRAFLLLDDTLE---------------------------LCYDVAKLSLGRSALLDAA 335 I +A L TLE L + +++ A LD A Sbjct: 725 SIAKALLSCRITLERYVVQHAAGIDPLVRERLTALAEHTDSLTTALDRITADIRAFLDPA 784 Query: 336 FERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTP--LSVADKFKELMAQKPGSWI 393 +R+ L+E+++P C F +A +P L A +++ + + Sbjct: 785 LTLDQAPPSRVIHLEELDEPKAELRSYC----FRVATSPVDLPAAPEWRRYL-ESFDRVH 839 Query: 394 FTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYSRQALLCVLRNLPQ--TNQPGSAR 450 + SATL V + +RLG+ + +L LPSPF QA + + P + G+ R Sbjct: 840 YVSATLRVAGEWDFMRTRLGLPDDLPTLALPSPFALRSQAEVVCFSDFPSWAEQEEGALR 899 Query: 451 QLA--------AMLRPIIEAN--NGRCFMLCTSHAMMR----DLAEQFRA-TMTLPVLLQ 495 +A M R + N +G +L T+ + L + R+ T+ PV+ Sbjct: 900 TVAHQVAGFATEMTRVRADGNGFDGGGAILTTARSTAAGIGFHLVRELRSRTLDPPVVEA 959 Query: 496 GETSKGQLLQQFVSA--GNALLVATSSFWEGVDVR-GDTLSLVIIDKLPFT---SPDDPL 549 G+ Q F G LV T W+GVDV + L LV I+KLPF +P Sbjct: 960 LTLGNGRAYQAFTDRRDGGGFLVGTKGLWQGVDVSDAERLRLVWINKLPFAPFAAPIVEA 1019 Query: 550 LKARMEDCRLRGGDP------FDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL-- 601 +A + + + G P + LP A + L+Q VGRLIR RGV+VI D +L Sbjct: 1020 RRAAVAERAEQAGHPDPEGAATEHYYLPLAALQLRQAVGRLIRSDRHRGVVVISDRKLAG 1079 Query: 602 ---VMRPYGATFLASLP-----PAPRTRDIA 624 + R Y FL SL P P T DI Sbjct: 1080 ASSLRRSYRRAFLGSLDDGLQRPDPETGDIG 1110 >UniRef50_Q0BQ29 ATP-dependent helicase, DinG family n=3 Tax=Rhodospirillales RepID=Q0BQ29_GRABC Length = 968 Score = 92.8 bits (229), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 101/236 (42%), Gaps = 32/236 (13%) Query: 37 KGQPLVV--EAGTGTGKTYAYLAPAL----RAKKKVIISTGSKALQDQLYSRDLPTVSKA 90 +G P +V EAGTGTGKT Y+APA R V IST ++ LQ Q+ Sbjct: 240 RGDPHLVLAEAGTGTGKTLGYIAPASLWAERNHGSVWISTYTRHLQRQIEGELARLFPDP 299 Query: 91 LKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVS 150 + L KGR NYLCL E + L + LL W+ T DGD+ Sbjct: 300 VIRRQKTVLRKGRENYLCLLNFEDAVASVAGLAHTRTIPLALLARWALVTEDGDLQ---- 355 Query: 151 VAEDSQAW----------PLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHL 200 D W P + C+ + C +K CFV + ++A AD+VV NH L Sbjct: 356 -GGDLPGWLPELFGGGLLPALADRRGECIHAGCGHWKKCFVEHSIRRARGADLVVANHAL 414 Query: 201 FLADMVVKESGFGEL----IPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAK 252 +A V +G L +P +FDE H + D A F LS + +L + Sbjct: 415 VMAQAV-----WGGLDDTTVPTR--YVFDEGHHVFDAADGAFSAILSGMETAELRR 463 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 41/126 (32%), Positives = 62/126 (49%), Gaps = 13/126 (10%) Query: 503 LLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGG 562 L+ F + ++ L+ T + +GVDV G L LV +++P+ PD + R L GG Sbjct: 829 LVDVFRTEIDSCLLGTDAMRDGVDVPGRALRLVAFERVPWPRPD---ILHRERRIHLSGG 885 Query: 563 DP--FDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 P +DE + L+Q GRL+R A DRGV ++ D R R L++ PP Sbjct: 886 MPSAYDERI---TRMRLRQAFGRLVRSASDRGVFILLDRRTPSR-----LLSAFPPGVTV 937 Query: 621 RDIARA 626 R + A Sbjct: 938 RRVGLA 943 >UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, putative n=28 Tax=Streptococcus RepID=Q04L99_STRP2 Length = 816 Score = 90.5 bits (223), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 57/197 (28%), Positives = 104/197 (52%), Gaps = 9/197 (4%) Query: 434 LCVLRNLP---QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTL 490 + ++++ P +T+ AR++AA+L I +A +L T+ M+ +++ +T+ Sbjct: 612 VVMVKDFPLVTETSLEVYAREVAALLVEI-QAFQQPILVLFTAKDMLLAVSD----LLTV 666 Query: 491 PVLLQGETSK-GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPL 549 L Q + QL ++F +L+ +SFWEGVD + ++ +LPF +P +PL Sbjct: 667 SHLAQYKNGDVHQLKKRFEKGEQQILLGAASFWEGVDFSSHPFVIQVVPRLPFQNPQEPL 726 Query: 550 LKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGAT 609 K ++ G + F + QLP A+I LKQ +GR +R R + +I D R++ + YG Sbjct: 727 TKKINQELNQEGKNAFYDYQLPMAIIRLKQALGRSMRREYQRSLTLILDRRIIGKRYGKQ 786 Query: 610 FLASLPPAPRTRDIARA 626 +ASL + I+R+ Sbjct: 787 IVASLAEEATVKTISRS 803 Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 54/210 (25%), Positives = 93/210 (44%), Gaps = 31/210 (14%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPL-VVEAGTGTGKTYAYLAPA 59 ++ DF+ + L + RE Q A V + K +P+ +++A TG GKTY YL PA Sbjct: 230 LSQDFSKNISLL----NLEVREEQESFAKEVGLLL-KDEPVSLIQAPTGIGKTYGYLLPA 284 Query: 60 LRAKK--KVIISTGSKALQDQLYSRDLPTVSKALK--YTGNVALLKGRSNYLCLERLEQQ 115 L K ++++S +K LQ+Q+ + K LK + ++ LKG NYL L+ Sbjct: 285 LSQSKERQIVLSVPTKILQNQIMEEE----GKRLKEVFHTDIHSLKGPQNYLKLDAF-YH 339 Query: 116 ALAGGD-------LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC 168 +L D +Q+L W +T GD+ + L ++ Sbjct: 340 SLQENDENRLFRRFKMQVL-------VWLTETETGDLDEIGQLYRYQHF--LADLRHNGN 390 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNH 198 L S + F +++++A ++V NH Sbjct: 391 LSSQSLFVTEDFWKRSQERAETCKLLVTNH 420 >UniRef50_A4VTT3 Rad3-related DNA helicase n=8 Tax=Streptococcus RepID=A4VTT3_STRSY Length = 837 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 146/637 (22%), Positives = 265/637 (41%), Gaps = 99/637 (15%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQ-AIEKGQPLVVEAGTGTGKTYAYLAPA 59 +++DF+ + A+ G R+ Q A V + +++ + ++A G GKTY YL P Sbjct: 250 LSEDFSTN----IALLGLHERKKQTAFAQVVEKRLVDEEKVHFIQAQAGLGKTYGYLLPL 305 Query: 60 L-RAKKKVIISTGSKALQDQLYSRD---------LPTVS-KALKYTGNVALLKGRSNYLC 108 L ++ + ++++ +K LQ+Q+ ++ +P VS K+ K+ +K + + Sbjct: 306 LAKSDQPLLVTVPTKLLQEQIMEKEGSKLKEIFRIPIVSLKSPKH-----FIKLDNYWKT 360 Query: 109 LERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC 168 L+R + L +Q+L W +T GD+ + + QA+ +D Sbjct: 361 LQRQDDNRLVN-QFKMQVLV-------WLCETTTGDLDE-LKQKQRYQAY-FDEIAHDGK 410 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD--VMIFDE 226 L + + F + ++A+ + +++ NH FL+ + ++ P D +++ DE Sbjct: 411 LEPESLFWGLDFWQRLNQQALSSRLLITNHAYFLSHLKDQD-------PHMDKRMVVIDE 463 Query: 227 AHQL----PDIASQYFGQSLSSR-QLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQD 281 A + ++A+ Q L+S Q+L KD A + D + + C L Sbjct: 464 AQKFLLAAENLATA--SQDLTSMLQVLQSKKDRATA----ILDQRLYESCQFELNHFLSR 517 Query: 282 FRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELC--YDVAKLSLGRSALLDAAFERA 339 FR + L +L N + + + L+D +L YD L E Sbjct: 518 FRQHGQREVQKAELHQLGQNLE-ELGDVDLNDLHQLIDYYDTFWL------------EEK 564 Query: 340 TLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIF-TSAT 398 L RL L+ S D P + IF SAT Sbjct: 565 NLEEKRLAYLR-------------------------SSKDSLLNATNYLPDTKIFCISAT 599 Query: 399 LSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALL-CVLRNLPQTNQPGSARQLAAMLR 457 L+++ + LG EQ L+P+ +++ L L ++ + A LA L Sbjct: 600 LTISKKVS-LADLLGFEQVTLDLIPTQTVTNQRLLFPTHLPDILAWTKEEHAAYLATTLG 658 Query: 458 PIIEANNGR-CFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNA-LL 515 I E GR +L TS +M+ +++ +P L Q + + L++ G +L Sbjct: 659 EIAEL--GRPILVLFTSISMLLQVSDLLEDN-NIPHLAQHKHGQEMTLKRKFERGECQIL 715 Query: 516 VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVI 575 + T FWEGVD + +I +LPF +P D ++ R G +PF + LP +I Sbjct: 716 LGTGVFWEGVDFASQNQLIQVITRLPFDNPKDRFVQKINHHLREEGKNPFYDYSLPMMMI 775 Query: 576 TLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLA 612 LKQ +GR R ++++ D R+ + YG L+ Sbjct: 776 KLKQAIGRTNRHDKQDSLVLVLDPRVHTKRYGQQILS 812 >UniRef50_A7VIR7 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A7VIR7_9CLOT Length = 856 Score = 86.7 bits (213), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 146/623 (23%), Positives = 251/623 (40%), Gaps = 76/623 (12%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQD 77 ++ R+ Q+QMA V +AIE + L V+A TG GKT A + P+++A +TG Sbjct: 251 YEYRKGQKQMAACVYKAIEGERRLFVQAPTGIGKTMAAMFPSVKA-----FATG------ 299 Query: 78 QLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWS 137 VSK T + G L L + L + + + L Sbjct: 300 --------LVSKIFYLTAKT--IAGTVPDQALTLLREHGLKFSSVMLTAKEKICL----- 344 Query: 138 NQTVDGDISTCVSVAE-----DSQAWPLVTS---TNDNCLGSDCPMYKDCFVVKARKKAM 189 N+T++ D C ++ + ++T + + S Y+ C ++ Sbjct: 345 NETMECDAEHCPYAKGHFDRVNAALFEMITQEERMDREVIRSYAEKYRVCPFELGLDASL 404 Query: 190 DADVVVVNHHLFLADMVVKESGFGELIPEADVMIF--DEAHQLPDIASQYFGQSLSSRQL 247 AD ++ +++ V + F + + +F DEAH L D AS + +L Sbjct: 405 FADTIIGDYNYVFDPRVNLKRFFSQTAYDTGRYVFLVDEAHNLVDRASSMYSATLYKEDF 464 Query: 248 LDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA 307 L + K + Y +L + L+ C L + + + E GY ++L + + Sbjct: 465 LAVKK-LVKPYSKKL--VRGLESCNRELLE----LKKRCPEHGY-----QILNDIGVLYL 512 Query: 308 FLL-LDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR 366 LL L T+E + K R +L+ F T + ++ Y + E TS Sbjct: 513 KLLQLHTTMETFLEDYKQIPERKEILEFYFALTTFLN-----IADLIDDSYVIYDELTSD 567 Query: 367 -HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSP 425 F + L + A+ K L K S +F SAT+ S +QA + +PSP Sbjct: 568 GRFMVRLYCVHPANNLK-LCLDKGVSTVFFSATILPVKYYMEMLSDTDTDQA--IYIPSP 624 Query: 426 FDYS-RQALLCVLRNLPQTNQP-GSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQ 483 FD RQ ++ V + T + +++A +R + + + G + S+ M+R++ EQ Sbjct: 625 FDQKKRQIMVGVDVSTKYTRRSVKEYKRVAEYIRHLFKVHPGNYMVFLPSYKMLREVYEQ 684 Query: 484 FRAT--MTLPVLLQ----GETSKGQLLQQFVSAGN--ALLVATSSFWEGVDVRGDTL--S 533 A + +L Q E + L+ F S N A + F EG+D+ GD L S Sbjct: 685 MTAEDCSVMELLCQEQNMKEADREAFLEHFSSQKNVVAFCIMGGIFSEGIDLTGDRLIGS 744 Query: 534 LVIIDKLPFTSPDDPLLK------ARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRD 587 +V+ LP + ++ R + D F L + + Q GR+IR Sbjct: 745 VVVGPGLPQVCNERKIMMDYFNTGKRTDTNADSSVDGFKYAYLYPGINKVFQSAGRVIRT 804 Query: 588 ADDRGVLVICDNRLVMRPYGATF 610 DD GV+++ D R Y + F Sbjct: 805 EDDTGVILLLDERFGTGEYNSLF 827 >UniRef50_C8X8L4 Helicase c2 n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X8L4_NAKMY Length = 778 Score = 85.9 bits (211), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 86/298 (28%), Positives = 136/298 (45%), Gaps = 57/298 (19%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK----KK 65 +LA F+PR Q ++ V A+E+ VEA TGTGKT AYLA A ++ Sbjct: 15 ELATGGAVFRPRAAQLDLSCRVLAAMEQTGQCAVEAPTGTGKTLAYLASAALRAARCDER 74 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALK-YTG---NVALLKGRSNYLCLE---RLEQQALA 118 +IST S +LQ Q+ +D P +++A++ TG +VA+ KG N C R+ Q L Sbjct: 75 TVISTESLSLQQQIADKDAPVITEAVESVTGQSVSVAVYKGWQNTACAMSAVRVLQALLD 134 Query: 119 GGDLPVQILSDVIL------------LRSWSNQTVDGDI----------------STCVS 150 PV + D +L + + + TVDG + S V Sbjct: 135 DFHAPVPVTRDGLLDLADAAEEAVSGMPTRTRITVDGQLTDPRDALGPAAWALRASATVG 194 Query: 151 VAE--------DSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLF- 201 A+ + W V+ + +CL + CP+ + C + A+++A AD+VV NH L Sbjct: 195 PADRPSYPHPITERQWQSVSVSATDCLRNRCPLLEFCRPLAAKQRASTADLVVTNHTLLG 254 Query: 202 -----LADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI 254 +V+ G ++ DEAH LPD + ++S R+LL+L +D+ Sbjct: 255 IQAAKKVPVVLSSRSLGRF----HHIVVDEAHGLPDAVRKQGESTMSGRRLLNLVRDV 308 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 8/155 (5%) Query: 459 IIEANNGRCFMLCTSHAMMRDLAEQFR--ATMTLPVLLQGETS-KGQLLQQFVSAGNALL 515 +++AN G +L + R A+ R A V+ Q + G + +A+L Sbjct: 582 LVDANGGSALILVATARTGRLYADALRLAAKGRWRVMSQWDGRPAGATATLWREDHSAVL 641 Query: 516 VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD---EVQLPD 572 V T SF G+D G T +LV++D++P +P +PL +AR+E G + + V D Sbjct: 642 VGTRSFMTGLDAPGLTCTLVVLDRIP-RAPQNPLGQARVEQLEADGLNRWQADRRVYAGD 700 Query: 573 AVITLKQGVGRLIRDADDRGVLVICDNRLVM-RPY 606 A + Q VGRLIR D G++ + D RL+ +P+ Sbjct: 701 AAVLTHQAVGRLIRRETDIGMVAVLDPRLLKNKPW 735 >UniRef50_C9XQW7 Putative exonuclease n=9 Tax=Clostridium RepID=C9XQW7_CLODC Length = 1039 Score = 85.5 bits (210), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 112/238 (47%), Gaps = 17/238 (7%) Query: 368 FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL--LLPSP 425 F + PL +AD F+E + + IF SATLS+++ + +F + LGI++ +++ ++ Sbjct: 691 FEFRVVPLKIADLFEENILSQLEKGIFLSATLSLSESMSYFKNTLGIDRVKNVEKIIEPI 750 Query: 426 FDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTS---HAMMRDLAE 482 FDY + + ++ + +++ ++ I + G L S ++ + Sbjct: 751 FDYKNRVSVVGFSDICEYRNSEFPNEMSKIISNISKITEGHTLALFNSKDRQEKTYEILK 810 Query: 483 QFRATMTLPVLL--QGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL 540 ++ + L + +G L ++ V G + +EGVD+ GD L V +DKL Sbjct: 811 KYLHSFNLEIYADKKGIRHLNDLNRKCVVLG------SKGCFEGVDIPGDGLVCVTLDKL 864 Query: 541 PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 P +P DPL M+ + G + + P I +KQ +GR++R D G VI D Sbjct: 865 PNLNPKDPLYFTIMK----KYGIDYYTINYPQMTIKVKQAMGRILRSKYDYGCFVIFD 918 Score = 79.7 bits (195), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 30/229 (13%) Query: 43 VEAGTGTGKTYAYLAPALRA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVA 98 +EA TG GK+ YL PA+ KK+++IST +K LQ QL ++D+P V +L G V+ Sbjct: 293 IEAPTGIGKSVGYLLPAILEARINKKRLLISTDTKELQIQLINKDIPNVLDSLGLNGKVS 352 Query: 99 --LLKGRSNYLCLERLE--------QQALAGGDLPVQILSDVILLRSWSNQTVDGDISTC 148 +KG++NY+C++RLE Q G +ILS +I L+ GDI Sbjct: 353 YGYIKGKNNYICIDRLEAYIDDYESQNPTKG-----EILS-LIFLKRLVEGGKYGDIEEI 406 Query: 149 VSVAEDSQAWPLVTSTNDNCLGSDC---PMYKDCFVVKARKKAMDADVVVVNHHLFLADM 205 + D+ N +C + C KDC ++ + + VVNH L LA Sbjct: 407 NYLVFDNFKEISTHLRNVSCDPNMCRPKKCKKDCLYKNRIEELKEEHITVVNHSL-LAKW 465 Query: 206 VVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI 254 K+ P ++++ DEAH L + +F ++S+ L L ++I Sbjct: 466 PYKDEK-----PLENIIV-DEAHNLTEKGYDFFSSIINSKSLRYLLQEI 508 >UniRef50_B7AB83 ATP-dependent DNA helicase, RecQ family n=3 Tax=cellular organisms RepID=B7AB83_THEAQ Length = 1684 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 85/264 (32%), Positives = 122/264 (46%), Gaps = 33/264 (12%) Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSV--NDDLHHFT---SRLGIEQAESLLLPSPFDY 428 P+ VA K + + S + TSATLSV D F LGIE AE LP Y Sbjct: 658 PVEVASDLKAGLWPRFQSVVLTSATLSVPTEKDPEGFALLKKVLGIEGAEGQRLPPSLPY 717 Query: 429 SRQALLCVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR 485 + A L V R+LP+ + P R L L ++ + R L TS ++ L + Sbjct: 718 EK-AHLIVPRHLPEARESTLPRFQRMLHQELHTLL-GHTRRSLTLFTS---LKRLEAAKK 772 Query: 486 ATMTLPVLL------QGETSKGQLL---QQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 A P LL + E G++ Q+ V+A + + S+ EGVD L+LV Sbjct: 773 ALEGHPHLLAPLTRREREDVAGRIKANPQEPVAA-----LGSRSYMEGVDF--PALNLVN 825 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADD---RGV 593 ++++PF P PLL RM+ +G DP+ + LP + + Q GRLIRD + G Sbjct: 826 LERIPFELPS-PLLSRRMDWVYEQGLDPWWDYYLPKSALAFAQAFGRLIRDQREGVGDGA 884 Query: 594 LVICDNRLVMRPYGATFLASLPPA 617 V+ D +L+ PY F LPP Sbjct: 885 FVLWDKKLLNAPYQEVFYRVLPPG 908 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 72/280 (25%), Positives = 123/280 (43%), Gaps = 16/280 (5%) Query: 21 REPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK--KVIISTGSKALQDQ 78 R Q +M V +A+ +G+ L +EA TGTGKT YL PALR K +V I+T +K LQ Q Sbjct: 250 RPAQEEMLRLVDEALREGKRLFLEAPTGTGKTKGYLYPALRLGKDQRVWIATHTKVLQAQ 309 Query: 79 LYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSN 138 L +L +++A Y + AL+K + LC E L + L + L + + Sbjct: 310 LLE-ELKGLARA-GYAVSAALVKSSRDTLCPEALLELFLDARKSEDEELRAAVGVLIHYA 367 Query: 139 QTVDGDISTCVSVAEDSQAWPLV---TSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVV 195 + D+ + S+ + TN CP ++ C K A ++V Sbjct: 368 ALGESDLEALPAYWHFSRGFREAREHVGTNPRRCRPVCPFFQTCAYQKLLAHRKGAQILV 427 Query: 196 VNHHLFLADMVVKE-------SGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL 248 N LA + +E P ++ DEAH L D+A++ L+ +L Sbjct: 428 TNQAYLLAHFLREEPLDAPEEEEAEPKTPPDPHLVVDEAHHLEDVATEALTWVLNHEELT 487 Query: 249 DLAKDITIAYRTE--LKDTQQLQKCADRLAQSAQDFRLQL 286 + + L+D+++L++ + + A++ R +L Sbjct: 488 HKLNRLAHPSKESGLLRDSRRLKELSSGARERAKEVREEL 527 >UniRef50_D1PKE8 ATP-dependent helicase DinG n=3 Tax=Bacteria RepID=D1PKE8_9FIRM Length = 184 Score = 82.0 bits (201), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 52/122 (42%), Positives = 70/122 (57%), Gaps = 9/122 (7%) Query: 482 EQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLP 541 E+ +A + LPVL Q + LQQF NA+L A+ + WEGVD GD +SL++I +LP Sbjct: 4 EKLKAKLPLPVL-QLRRNAQSYLQQFKQLPNAVLFASGACWEGVDFPGDMVSLLVIPRLP 62 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQ---LPDAVITLKQGVGRLIRDADDRGVLVICD 598 F P DPL +A R + GD +Q +P+ I L+QG GR IR D GV+ I D Sbjct: 63 FPVP-DPLGEA----LRTQYGDLHSYIQTEIVPEMQIKLRQGFGRAIRTETDSGVVAILD 117 Query: 599 NR 600 R Sbjct: 118 PR 119 >UniRef50_Q9Z9N9 Unknown (Fragment) n=1 Tax=Bacillus halodurans RepID=Q9Z9N9_BACHD Length = 154 Score = 82.0 bits (201), Expect = 6e-14, Method: Composition-based stats. Identities = 46/103 (44%), Positives = 64/103 (62%), Gaps = 4/103 (3%) Query: 9 GQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKK 64 G L+KA ++ R+ Q +M V +A + +++EAGTGTGK+ AYL PA K Sbjct: 51 GSLSKAFLTYEWRQGQLKMMEVVHEAFSNNEHVLIEAGTGTGKSLAYLLPAAYFAHMEKA 110 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYL 107 V+IST + LQ QL RD+P + K L + NVALLKGR++YL Sbjct: 111 PVVISTQTIPLQSQLLERDIPLLQKILPFPINVALLKGRNHYL 153 >UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9EC49_MACCJ Length = 850 Score = 81.6 bits (200), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 51/177 (28%), Positives = 84/177 (47%), Gaps = 8/177 (4%) Query: 437 LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQG 496 ++N Q + +E + + +L S+ + ++ + + P L+ Sbjct: 651 IQNYHYMKQDQYIESCLQYIHYYLENMSSKVLILMNSYRQI-EILRSYLVELYDPSLIIT 709 Query: 497 ETSKGQLL---QQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKAR 553 +TS L +QF + N + +AT +F+EGVD + D V+I LPF PDD + Sbjct: 710 QTSDVNTLKLNEQFNTLDNGIFLATQTFYEGVDFKYDGFKTVMIISLPFMHPDDLNIMLM 769 Query: 554 MEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATF 610 ++ D F + QLP AV L Q GRLIR+ D+G+L+ D RL+ Y + F Sbjct: 770 RDEV----NDVFMDYQLPGAVNKLHQATGRLIRNEQDKGMLICFDRRLLEGRYASYF 822 Score = 57.8 bits (138), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 33/98 (33%), Positives = 53/98 (54%), Gaps = 4/98 (4%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKKVIISTGS 72 G+ RE Q +++ + + + + L +EA G GKT +YL A+ +K ++IST + Sbjct: 244 GYTFREKQCELSEHIYRQLREDSVLTIEADLGGGKTISYLLAAVYYLSTYRKSLLISTST 303 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLE 110 LQ+QL DL + ALK ++K R +YL LE Sbjct: 304 IFLQNQLIDEDLRRIEHALKIKVPFQIIKSRRHYLSLE 341 >UniRef50_B5XKK7 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=33 Tax=Streptococcus RepID=B5XKK7_STRPZ Length = 833 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/271 (25%), Positives = 123/271 (45%), Gaps = 29/271 (10%) Query: 359 YWYECTSRHFTLALTPLSVADK----FKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 YW + + +T L+ A K F++L+ + ++ F SATL+++ ++ LG Sbjct: 554 YWL-SSEKQEEKRVTYLNSASKAFIHFQQLLPETVKTY-FVSATLTISSEVT-LADLLGF 610 Query: 415 EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLR----------PIIEANN 464 E E L D + L+ V + P + + A+ + PI+ N Sbjct: 611 E--EYLYHVIEKDKKQDQLVLVDQEAPIVTEVSDQIYVEAIAKRIESLKQEGSPILVLFN 668 Query: 465 GRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKG-QLLQQFVSAGNALLVATSSFWE 523 + +L S D +Q++ +P L Q + + ++F +L+ SFWE Sbjct: 669 SKKHLLLVS-----DYLDQWQ----VPHLAQEKNGTAYNIKKRFDQGEQTILLGLGSFWE 719 Query: 524 GVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGR 583 GVD + +I +LPF +P+D +K +G +PF + LP ++ LKQ +GR Sbjct: 720 GVDFIQADRMITLIARLPFDNPEDFFVKKMSHYLLEKGKNPFRDYFLPMTILRLKQAIGR 779 Query: 584 LIRDADDRGVLVICDNRLVMRPYGATFLASL 614 +R D + V++I D RL+ + YG L L Sbjct: 780 TMRRQDQKSVVIILDRRLLTKSYGQVILEGL 810 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 18/229 (7%) Query: 10 QLAKAIP------GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL--R 61 Q++K+ P G + R Q Q A + + +G +EA TG GKTY YL P L Sbjct: 244 QISKSFPINMALLGLEERPKQTQFAQLIDEDYHQGVASFIEAQTGIGKTYGYLLPLLAKE 303 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 + ++I+S +K LQDQL + ++ + + + LKG +NYL L+ +L D Sbjct: 304 DQNQIIVSVPTKLLQDQLMAGEVAAIQEQFHIACHS--LKGPANYLKLDSFA-DSLDQND 360 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 + + L W +T GD+ + + + +D + Y F Sbjct: 361 QNRLVNRYKMQLLVWLLETKTGDLDEIKQKQRFAAYFEQL--KHDGDIKQSSEFYDYDFW 418 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQL 230 + +KA A +++ NH FL V + F V++FDEA +L Sbjct: 419 RVSYEKAKTARLLITNHAYFL-HRVQDDKDFA----RNKVLVFDEAQKL 462 >UniRef50_D2MHS9 Helicase c2 (Fragment) n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MHS9_9BACT Length = 150 Score = 81.3 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 39/113 (34%), Positives = 63/113 (55%), Gaps = 7/113 (6%) Query: 136 WSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVV 195 W+ T DG +S D W V++ +++C G+ CP Y CF K+R++ A V+V Sbjct: 7 WAKTTADGSLSDLAFTPPDD-VWDRVSAESESCPGTKCPHYSSCFFFKSRRELSRASVLV 65 Query: 196 VNHHLFLADMVVK-----ESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLS 243 NHH+ +D+ +K +S FG +IP ++FDEAH + + A+ +F LS Sbjct: 66 ANHHMLFSDIAIKGAAGPDSDFG-IIPRYAKVVFDEAHNIAEAATSHFSLKLS 117 >UniRef50_B6FUD5 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUD5_9CLOT Length = 678 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/224 (29%), Positives = 102/224 (45%), Gaps = 22/224 (9%) Query: 391 SWIFTSATLSVNDDLHHFTSRLGIEQ---AESLLLPSPFDYSRQALLCVLRNLPQTNQPG 447 S I TS TL G+E + + SPF Y + LL + + L + Sbjct: 426 SAILTSGTLKAGTGFLRTRQITGLEGRAGVQEYVAESPFSYEKNCLLYLPKTLDHCRRGS 485 Query: 448 --SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQ 505 A +A + +I + G +L TS+ +M + + R ++ P++ S+ ++L+ Sbjct: 486 REEAVMVANHIHSLICSTYGHTLVLFTSYTLMGSVYQILRDSLPFPMVEVWRHSQEEILR 545 Query: 506 QFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPF 565 F + N +L A S WEGVD GD +S +II KLPF P DP+ +A E + Sbjct: 546 -FKTMENGVLFAAGSCWEGVDFPGDMVSSLIIVKLPFAVP-DPISEAEKE--------TY 595 Query: 566 DEVQ-------LPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 D ++ +PD L+Q GR IR D V+ I D R V Sbjct: 596 DSLETYIQSIIVPDMQKKLRQEFGRAIRTETDTCVVSILDIRAV 639 Score = 78.6 bits (192), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 68/259 (26%), Positives = 116/259 (44%), Gaps = 34/259 (13%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKK----------- 65 G RE Q ++ + + Q + +AG G GKTYAYL + +K Sbjct: 48 GLAVREEQIRLCHEMLDTLLGEQIALCDAGVGIGKTYAYLVACVLLRKYSMLTGRGNPLE 107 Query: 66 ---VIISTGSKALQDQLYSRDLPTVSKALKYTGNV------ALLKGRSNYLCLERLEQQA 116 V++ST S ALQ + + +P +S+ L G + + KG+ +++C RLEQ+ Sbjct: 108 QRPVVVSTSSIALQKAILTEYIPFLSRVLLEQGIIQSPLRAVVRKGKEHFVCDNRLEQRI 167 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 A + LL + +D SV S + C +CP Sbjct: 168 EAIRHKQKNAVQKAALLSLRKHYDMD-------SVKNLSGFDRRLVCVPKFC-PRECPGR 219 Query: 177 KDC----FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPD 232 + C ++ ++RK+ D + + NH+ LAD + G+ L+ + +I DEAH+LP+ Sbjct: 220 QMCRYQRYLEESRKQ--DVFIQICNHNYLLADAYHRAEGYKPLLSDYRTLIVDEAHKLPE 277 Query: 233 IASQYFGQSLSSRQLLDLA 251 A Q FG++L + ++A Sbjct: 278 AARQMFGKNLCMDDIREIA 296 >UniRef50_B0S2X2 ATP dependent helicase n=2 Tax=Finegoldia magna RepID=B0S2X2_FINM2 Length = 748 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 107/434 (24%), Positives = 186/434 (42%), Gaps = 53/434 (12%) Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 D+V+ +++ ++ D VV F E+ ++ DEAH L + SLS QL+D Sbjct: 345 CDIVICDYN-YVFDPVVYLKRFFEVPYLRMSLLVDEAHNLVSRGRDMYSYSLSFNQLMDC 403 Query: 251 AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF-- 308 ++ + + ELK + L+K A ++ A LG+P N E L+ I Sbjct: 404 CDEL-VDEKKELKIKRNLKKIAQQIKDEA------LGKPV---NTYEDLSVDLIDYCVRC 453 Query: 309 ------LLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYE 362 L+++ + YD +LD FE + ++ + + + Sbjct: 454 KESMTKFLVEEKDKPYYD---------KVLDVYFEI-----NKFLKISDFYDDSFVTLIK 499 Query: 363 CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLL 422 + + L+ + FK L+ +K S +F SATLS + +F LG+E+ ++ L Sbjct: 500 SENDDVIYNIMCLNTHNIFKNLL-KKCKSNVFFSATLS---PMTYFADVLGLEKFYNIRL 555 Query: 423 PSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 SPF + + + ++ + ++A +LR I E G + S++ + + E Sbjct: 556 ESPFPKENLKVNHINISTRFKDREDTKYKIAEILRKINEKP-GNKLIFFPSYSYLESVYE 614 Query: 483 QFRATMTLPVLLQGET----SKGQLLQQFVSAGN--ALLVATSSFWEGVDVRGDTLSLVI 536 +L Q T + + L QF ++ N A V F EGVD+ GD L+ V Sbjct: 615 ----ICDFDILTQERTLTDMERLEFLSQFTTSSNIMAFCVLGGVFSEGVDLSGDRLNTVG 670 Query: 537 IDK--LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 I LP S ++ L+K ++ G + FD + + + Q GRLIR D G L Sbjct: 671 IISVGLPGISVENDLIKKYFDE---NGKNGFDYAYVYPGMNKVHQAGGRLIRTDTDTGEL 727 Query: 595 VICDNRLVMRPYGA 608 + D+R PY + Sbjct: 728 FLIDDRFDSYPYKS 741 >UniRef50_UPI0001C41B43 ATP-dependent DNA helicase n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41B43 Length = 660 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 137/609 (22%), Positives = 239/609 (39%), Gaps = 111/609 (18%) Query: 7 PDGQLAKAIPGFKPREPQRQMAVAVTQAIEKG-QPLVVEAGTGTGKTYAYLAPALRAKKK 65 PD + + P +PRE Q + + +AI KG + +++EAGTGTGK+ A R + Sbjct: 124 PDS-IIENFPFERPREGQLDIIADIEEAISKGFKYIILEAGTGTGKS-AVATTLARMYES 181 Query: 66 VIISTGSKALQDQLYSR-DLPTVSKALKYTGNVALLKGRSNYLCL-ERLEQQALAGGDLP 123 I T +K LQ Q D P L+KGR N+ C+ + E G Sbjct: 182 AYILTMTKQLQRQYADEFDFP-------------LVKGRGNFDCIKDGFEVTCDMGACKT 228 Query: 124 VQILSDVILLRSWS-NQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVV 182 S S N T+ GD++ +DS + TND+ C Sbjct: 229 APKNSKFFCPYGISKNPTLTGDLA-----FQDSYGGDIFFQTNDH-----------CHYW 272 Query: 183 KARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 + + A+++ + ++N+ D + E + + + ++I DEAH + D + +L Sbjct: 273 QQKANAINSPITLMNY-----DYAILELNYVKHFGKRTLLILDEAHNIEDKLMKTMEINL 327 Query: 243 SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANP 302 +RQ L KDI + T+ ++GE Sbjct: 328 YNRQ---LEKDIKKVISPQTLKTR------------------EMGE-------------- 352 Query: 303 QIQRAFLLLDDTLELCY---DVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359 +++ D ++ Y D+ L ++ +R RLK LK + Sbjct: 353 -----WIMEIDAIQGHYADIDIKDLPTNKA-------DRIRSTSARLKDLKNKLETEPGN 400 Query: 360 WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE- 418 W S ++ PL V + + + IF SAT+ F+ LG+ E Sbjct: 401 WV-IDSNENGVSFKPLKVNHYANDYLFKHGDVVIFLSATIL---SAKMFSKWLGLNPHEV 456 Query: 419 -SLLLPSPFDYSRQAL-LCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCT-SHA 475 + + SPF ++ + L + + + SA + +L I++ + G ++ T S+ Sbjct: 457 YHIKVDSPFSVEKRPIELNLAGKMSKNRVKQSAPKSIEILNKILKRHEGDKGLIHTHSYK 516 Query: 476 MMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 + + + ++ G ++ ++L+ F N L++ + S EGVD+ D Sbjct: 517 CQQYIINNLYNSR---LIAHGSNNRERVLKYFEEDDNPLVLVSPSMSEGVDLPYDKCRFQ 573 Query: 536 IIDKLPFTSPDDPLLKA-RMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 +I K+PF DP + R +D R V+TL Q GR +R DD V Sbjct: 574 VIYKIPFPYLGDPQINMRRKKDQRWYAY---------KTVMTLMQAYGRGMRAEDDSCVT 624 Query: 595 VICDNRLVM 603 I D+ + M Sbjct: 625 YILDSDIQM 633 >UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus thermophilus RepID=Q746C7_THET2 Length = 1649 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 19/227 (8%) Query: 19 KPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQ 78 KPR QR+M V +A+ + + L++EA TGTGKT YL P L +K ++T +K LQ Q Sbjct: 243 KPRPAQRRMFQLVEEALSREEILLLEAPTGTGKTKGYLYPVLHQRKPTWVATHTKVLQAQ 302 Query: 79 LYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL-------AGGDLPVQILSDVI 131 +L V++ Y AL+K + LC +RL + L G D+ I + Sbjct: 303 AME-ELRAVAQK-GYQVRAALVKSPQDTLCPDRLLEAFLREARSGKPGEDVGAAI---AV 357 Query: 132 LLRSWSNQTVDGD-ISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMD 190 LL + + D + + E + TN + +CP C ++ + Sbjct: 358 LLHYAAQRGHDLEALPAYWHFLEGFREVRGRVGTNPDRCRRECPFASACAYQAILRRREE 417 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEA-DVMIFDEAHQLPDIASQ 236 A ++V N L ++ +++ +PEA ++ DEAH L D+A++ Sbjct: 418 AQILVTNQAYLLHSLLGEKA-----LPEARPALVLDEAHHLEDVATE 459 Score = 75.1 bits (183), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 84/259 (32%), Positives = 121/259 (46%), Gaps = 26/259 (10%) Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSV----NDDLHHFTSR-LGIE-QAESLLLPSPFD 427 P+ VA + +E + + TSATL+V + + F R LG+ QA + LP Sbjct: 642 PIEVAAELEEKLWPAFRGVVLTSATLAVPTETDPEGFAFLQRALGLPPQARAERLPPSLP 701 Query: 428 YSRQALLCVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF 484 Y R A L V R+LP+ + P R L LR ++ R L TS + L Sbjct: 702 YHR-AHLLVPRHLPEARESTLPRFQRLLHRELR-LVLGQVPRTLTLFTS---LSRLEAAK 756 Query: 485 RATMTLPVLLQGETSKGQLLQQFVSAGNAL----LVATSSFWEGVDVRGDTLSLVIIDKL 540 +A LP L T + + + N + + SF EGVD+ L +V +++L Sbjct: 757 KALEDLPHLRAPLTRREREDTVRFARSNPTEPLAALGSRSFMEGVDL--PHLRVVNLERL 814 Query: 541 PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRD----ADDRGVLVI 596 PF P PLLK RM RG DP+++ LP AV++ Q GRLIRD A D G ++ Sbjct: 815 PFPYPS-PLLKRRMALAYERGLDPWEDYYLPKAVLSFVQAFGRLIRDDRQVAGD-GAFIL 872 Query: 597 CDNRLVMRPYGATFLASLP 615 D +L+ Y F +LP Sbjct: 873 WDKKLLHADYQELFYRALP 891 >UniRef50_A8REN5 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REN5_9FIRM Length = 806 Score = 75.9 bits (185), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 148/625 (23%), Positives = 246/625 (39%), Gaps = 86/625 (13%) Query: 21 REPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLY 80 R+ QR++A+AV + I L +A TG GKT + L P L+A G ++ Y Sbjct: 215 RKGQRKLAIAVYKTILDHDILFAQAPTGIGKTISTLFPGLKA-------IGEGKIEKIFY 267 Query: 81 SRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQT 140 +K + T VA Y L++L +Q L + + + LL + Sbjct: 268 -----VCAKNI--TAQVA-------YDALQQLYKQNLHFKSVAITAKDKICLLAERNCDP 313 Query: 141 VDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDA----DVVVV 196 + + + + L+T +D Y +VV + +DA DV++ Sbjct: 314 QNCPYAKGYYNRNKNALYELITQ-HDFIDYERLVEYGKKYVVCPFELGLDACEYSDVIIG 372 Query: 197 NHHLFLADMVVKESGFGELIPEADVMIF-DEAHQLPDIASQYFGQSLSSRQLLDLAKDIT 255 +++ V + F I + + + DEAH L D A + + LS +D Sbjct: 373 DYNYVFDPRVYLKRFF---IDKGNYLFLVDEAHNLVDRAREMYSAELSK-------QDFQ 422 Query: 256 IAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTL 315 I K +L K L + R Q E + LA + FL L Sbjct: 423 IIKAYIPKSFAKLHKAHHHLNKQFISLRKQCEEKQ-----LDFLAQKEAMPFFL---QCL 474 Query: 316 ELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTP- 374 E KL+ + L+ E R K ++ + +Y+ HFT + Sbjct: 475 E------KLTNELNEYLEGIHENEMEDALRELYFKALHYQRIAEFYD---EHFTTCIQRQ 525 Query: 375 ----------LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPS 424 ++ + K ++ +K + IF SATLS D ++ T G ++ L LPS Sbjct: 526 KQDVWIRQYCMNPSQPIKNIL-RKGRATIFFSATLSPID--YYLTLLGGNHDSKRLSLPS 582 Query: 425 PFDYSRQALLCVLRNLPQTNQPGSARQLAA---MLRPIIEANNGRCFMLCTSHAMMRDLA 481 PF ++ + ++ N T ++ + A +L I NG + S+A M+ L Sbjct: 583 PF--PKEHVHVMIANQISTRYRQRSQSIDAICELLYATITQRNGNYILFAPSYAYMKQLY 640 Query: 482 EQF-RATMTLPVLLQ----GETSKGQLLQQFVSAGNALL---VATSSFWEGVDVRGDTLS 533 E F ++ + V Q E K L QF + + L V F EG+D++GD L Sbjct: 641 EHFIKSYPDIDVFYQQQDMTEEEKQTFLAQFQISKHLRLYFCVCGGMFSEGIDLKGDALI 700 Query: 534 LVIIDK--LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 VI+ LP +P L++ ++ +G Q P + + Q GRLIR +D+ Sbjct: 701 GVILVGVGLPQINPYSDLIRQHFDEENQQGYAY--AYQYP-GMNKILQSAGRLIRSHEDK 757 Query: 592 GVLVICDNRLVMRPYGATFLASLPP 616 G+L+ D R Y + L P Sbjct: 758 GILLFIDERYTSLHYRGALPSHLHP 782 >UniRef50_B0G3G8 Putative uncharacterized protein n=16 Tax=Bacteria RepID=B0G3G8_9FIRM Length = 805 Score = 75.5 bits (184), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 141/635 (22%), Positives = 240/635 (37%), Gaps = 100/635 (15%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQD 77 F RE Q+ + +V + I + + L ++A TG GKT A L PA++A + L D Sbjct: 192 FAYREGQKNLVTSVYRTILRKKKLFIQAPTGVGKTIATLFPAVKAV--------GEGLGD 243 Query: 78 QLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILS--DVILLRS 135 +++ T+++ + + E L +QAL + V +L+ D I Sbjct: 244 KIFYLTAKTITRTVAWQA-------------FETLREQALR---MKVIVLTAKDKICFCE 287 Query: 136 WSNQTVD------GDISTCVSVAEDSQAWPLVTST---NDNCLGSDCPMYKDCFVVKARK 186 +N D G + + L+TS+ N L +K C + Sbjct: 288 ETNCNPDYCPYAKGHFDRV-----NDAVYELLTSSDELNREILEEQARKWKVCPYEMSLD 342 Query: 187 KAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQ 246 A+ D ++ +++ FGE + + DEAH L + Q + S+ Sbjct: 343 VAVWVDAIICDYNYVFDPQAHLRRFFGEGNKGDYLFLIDEAHNLVERGRQMYSASICKED 402 Query: 247 LLDLAKDITIAYRTELKDTQQLQKCADRL---AQSAQDFRLQLGEPGYRGNLRELLANPQ 303 L + K + Y E K T++L+ C L + +++++ L + Sbjct: 403 FLGIKK--KVRYEDE-KLTERLEDCNRGLLAMKRECEEYKV-------------LNSVSH 446 Query: 304 IQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYEC 363 I L L LE + + R +L+ F + +RL E Y + E Sbjct: 447 IYLKLLNLVTELERFLEECEKEDIREEVLEFYFHIRSFMDIH-ERLDE----NYVIYSEL 501 Query: 364 TSR-HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE-SLL 421 F + L ++ A E + QK S IF SATL + ++ L + + ++ Sbjct: 502 DGEGKFRVHLFCVNPAGNLGEFL-QKGNSTIFFSATLL---PITYYKKLLSTGKEDYAIY 557 Query: 422 LPSPFDYSRQALLC---VLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 SPFD + L+ V + N+ R A L + G + S+ + Sbjct: 558 AESPFDVEHRLLMVGGDVSTKYTRRNEEMYQR-YARYLWKLANGKKGNYLVFFPSYRFLE 616 Query: 479 DLAEQF-----------------RATMTLPVLLQGETSKGQLLQQFVSAGNALL----VA 517 D+ E F R T E + + L F L V Sbjct: 617 DVYEAFEKIQEKEELEAFPALGHRITCVTQSQSMSEKGREEFLNTFEEERKESLLGFCVM 676 Query: 518 TSSFWEGVDVRGDTL--SLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVI 575 F EG+D+ D L ++++ LP + +LK + RG FD L + Sbjct: 677 GGIFSEGIDLTEDKLIGAVIVGTGLPQVCREREILKDYFDQHGQRG---FDYAYLYPGMN 733 Query: 576 TLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATF 610 + Q GR+IR +DRGV+++ D+R R Y TF Sbjct: 734 KVLQAAGRVIRTDEDRGVILLLDDRFFDRRYQETF 768 >UniRef50_UPI000046DC90 ATP-dependent DNA helicase, truncated n=1 Tax=Streptococcus thermophilus LMG 18311 RepID=UPI000046DC90 Length = 260 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 100/232 (43%), Gaps = 21/232 (9%) Query: 393 IFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQT-----NQPG 447 I SAT+ + D+ LG+ Q + LP D R + + + +P + G Sbjct: 14 IIVSATIDIGPDVD-VADLLGLSQVRKVSLP--MDTLRNQSIWIDQTMPMIGVSSEEEYG 70 Query: 448 SA-----RQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQ 502 A ++L+AM PI F+L TS M +++ + + + Sbjct: 71 EAIAKRLQKLSAMGYPI--------FVLFTSRKSMIAVSDLLDHREVHHLTQEKNGTAFN 122 Query: 503 LLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGG 562 + ++F LL+ SFWEG D + +I +LPF +P DP + +G Sbjct: 123 IKKRFDRGETNLLLGMGSFWEGADFAQQDKVIEVITRLPFDNPKDPFYQKIESLFSKQGK 182 Query: 563 DPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASL 614 FD LP V+ KQ +GR R + R +++ DNR +++ YG F+ + Sbjct: 183 STFDSYSLPMMVLRFKQAIGRAQRRPEQRSAILLMDNRPLVKSYGKLFIKEV 234 >UniRef50_D0BJL1 DnaQ family exonuclease/DinG family helicase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BJL1_9LACT Length = 873 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 63/252 (25%), Positives = 109/252 (43%), Gaps = 9/252 (3%) Query: 368 FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFD 427 ++L L + A K + +I SAT+ + L H ++Q + L LP + Sbjct: 607 YSLQLESMKSALKMWREIYGYMYQFIGISATIPIFTPLFHSI----VKQEDGLFLPKTYQ 662 Query: 428 YSRQALLCVLRNLPQTN---QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF 484 + + +LP + P LA L I + GRC +L S M+ +L + Sbjct: 663 NFEHTVF-IPTDLPTPSIIVTPERVELLARQLLDIYQRKQGRCLVLVHSIEMLEELEQVL 721 Query: 485 RATMTLPVLLQGETSKGQLLQ-QFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFT 543 +P+L+Q + +Q +F + LL+ SFWEG D ++ +II KLPF Sbjct: 722 LEHPDIPLLVQRTNQSSRKVQRKFQQQESVLLLGVYSFWEGFDSGEVSIDQLIIPKLPFP 781 Query: 544 SPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 +P + E+ +L+ F + L + QG+GR+ R ++ + I D R + Sbjct: 782 NPTQLQQRVIAEEMKLQNRHYFQDYALEKMLQQFYQGLGRMNRPHQEKAEIWILDTRSIN 841 Query: 604 RPYGATFLASLP 615 PY + +P Sbjct: 842 SPYANRVMQCIP 853 Score = 61.6 bits (148), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 90/206 (43%), Gaps = 36/206 (17%) Query: 43 VEAGTGTGKTYAYLAPALRAKKK---VIISTGSKALQDQLYSRDLPTVSKALKYTGNVAL 99 VEA G GKT AYL +L+ + + + I+T + LQ QL +++ T+ ++L + +A Sbjct: 276 VEAEPGIGKTLAYLLVSLQLQSQNHPIWIATSTILLQQQLVDQEIKTLEESLGISLPIAT 335 Query: 100 LKGRSNYL-------CLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVA 152 +KG+ +YL LE+ EQ L VI L W T GD+S C S+ Sbjct: 336 VKGQEHYLSLSGLAEVLEKYEQYQNQKSSL------TVIGLLKWLAHTTSGDLSECNSLF 389 Query: 153 EDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGF 212 + W +T D F +A + A + +V+ N FL + + Sbjct: 390 YHREIWEKITRKERQFSKMD-------FYRRAIRHARKSKMVITN-QAFLVQYLKQ---- 437 Query: 213 GELIPEAD-----VMIFDEAHQLPDI 233 P+ D ++I DE QL + Sbjct: 438 ---TPQRDHFDKPIVIIDEVQQLEHV 460 >UniRef50_A4NVT8 ATP-dependent helicase n=2 Tax=Haemophilus influenzae RepID=A4NVT8_HAEIN Length = 105 Score = 73.6 bits (179), Expect = 2e-11, Method: Composition-based stats. Identities = 35/61 (57%), Positives = 46/61 (75%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 F+ +G+L++ I GF+PR Q +MA AV +AI+ LV+EAGTGTGKT+AYLAPAL K Sbjct: 11 FSLNGELSQNIKGFRPRTEQLEMAYAVGKAIQNKSSLVIEAGTGTGKTFAYLAPALVFGK 70 Query: 65 K 65 K Sbjct: 71 K 71 >UniRef50_C5BQV4 Putative uncharacterized protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BQV4_TERTT Length = 802 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 140/613 (22%), Positives = 231/613 (37%), Gaps = 74/613 (12%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 + P R QR+ A V + I QP+++EA TG+GKT L PA+ K Sbjct: 204 SFPFAHYRPLQRETAAEVYRHIRDKQPILIEAPTGSGKTLTALFPAI------------K 251 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 A + L+++ L SK + ++ L+ L QA D LS+ Sbjct: 252 AFGENLHTQTLYLTSKGSTQVQAESTVRQLDPEGYLDTLIIQA---RDKVCPCLSNNENT 308 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWP------LVTSTNDNCLGSDCPMYKDCFVVKARKK 187 RS + GD C P L T+ L Y C + Sbjct: 309 RS----SCTGDNGYCTRTVGFYDRLPSARNEALRTTLTKVALTEIADTYHICPFALSLHL 364 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 A V+ + + F D +V+ S F E + V++ DEAH LP A + L S Sbjct: 365 APWLSFVIADVNYFY-DPLVRLSCFDEHT-NSRVILLDEAHNLPGRARDMYSAELDSALS 422 Query: 248 LDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA 307 + K + + +L+K +L RL P +L L+ P Sbjct: 423 EGVRKSLP-------RKAAKLKKAISKLVHL---LRLLDENPINEKDLTRLMYFPLQNLL 472 Query: 308 FLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH 367 L D E A+++ G SA+ +++F R + ++ + + Sbjct: 473 QALQQDEAE-----AEIT-GSSAMPNSSFREWLKQLYRFAVMLQLLSAAHISILTKNGKE 526 Query: 368 FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPF 426 L + L + ++L +Q + F SATL D + +LG+ +Q + LP F Sbjct: 527 RVLKIRCLDASGYLEKLQSQARSTIAF-SATL---DPFNFTRQQLGLPQQTQGYRLPPVF 582 Query: 427 DYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIE-------ANNGRCFMLCTSHAMMRD 479 Q ++C T P R+ L P++E A G + S+A + Sbjct: 583 PEENQYVICT------TYIPTHWRKRKESLNPLVELIRELTRAKPGNYLVFFPSYAYLEM 636 Query: 480 LAEQFRAT-----MTLPVLLQGETSKGQLLQQFVSAGNALL---VATSSFWEGVDVRGDT 531 A ++A + L ++ + + + F++ G L + + EG+D G Sbjct: 637 AATAYQAAFPETELFLQTAASSDSQRQEFINLFLNGGEPKLGFAIVGGIYAEGIDYAGTA 696 Query: 532 LSLVIIDKLPFTSPDDPL--LKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDAD 589 L II PDD + C L G Q P +I L+Q GR+IR Sbjct: 697 LLGAIIIGTGMPQPDDEQQQMSQYFSRCGLNGFQ--YAFQFP-GLIRLRQTAGRVIRTES 753 Query: 590 DRGVLVICDNRLV 602 D+G+++ + RL+ Sbjct: 754 DKGIIIFVEPRLL 766 >UniRef50_Q2RPW4 Helicase c2 n=6 Tax=Alphaproteobacteria RepID=Q2RPW4_RHORT Length = 927 Score = 72.4 bits (176), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/223 (30%), Positives = 102/223 (45%), Gaps = 33/223 (14%) Query: 41 LVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGSKALQDQL---YSRDLPTVSKALKY 93 ++ EAGTG GKT Y+APA R + V IST ++ LQ QL R P ++ ++ Sbjct: 249 VLAEAGTGVGKTLGYIAPASLWAERNEGTVWISTYTRNLQRQLDGELDRLYPDPAEKMR- 307 Query: 94 TGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAE 153 V + KGR NYLCL E+ G P + ++ + L+ W T DGD+ V Sbjct: 308 --KVVIRKGRENYLCLLNYEEAVGRLGATPQEAVA-LGLMARWIKATRDGDM-----VGG 359 Query: 154 DSQAWPL----------VTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLA 203 D W + + C+ S C Y CF+ +A ++A A +VV NH L Sbjct: 360 DFPGWMVDILGRERSLALADRRGECVFSSCDHYDRCFIERAVRRARRARLVVANHAL--- 416 Query: 204 DMVVKESGFGELIPEA--DVMIFDEAHQLPDIASQYFGQSLSS 244 V+ ++ G + ++ I DE H + D A F LS Sbjct: 417 --VLIQAALGGIDDDSRPTRYILDEGHHVFDAADSAFSAHLSG 457 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 16/192 (8%) Query: 422 LPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 +PSPFDY + V+ ++ + + Q++A R + A G L T+ +R + Sbjct: 718 VPSPFDYPATTRVLVITDVKRDDL----DQVSAAYRELFRAAGGGGLGLFTAIGRLRAVH 773 Query: 482 EQFRATM---TLPVLLQGETSK--GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 + + LP+L Q + L++ F + +A L+ T + +GVDV G +L L++ Sbjct: 774 ARIAPALDALGLPLLAQHVDAMDISTLIEIFRAEEDACLLGTDAVRDGVDVPGRSLRLIV 833 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 D++P+ PD L KAR + GG +D+ A + LKQ GRL+R A DRGV V+ Sbjct: 834 FDRVPWPRPDI-LHKARR---KAMGGSLYDDRI---ARLRLKQAFGRLVRRAGDRGVFVM 886 Query: 597 CDNRLVMRPYGA 608 D+RL R GA Sbjct: 887 LDSRLPSRLGGA 898 >UniRef50_A1AQ39 DEAD_2 domain protein n=7 Tax=Desulfuromonadales RepID=A1AQ39_PELPD Length = 807 Score = 72.0 bits (175), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 141/627 (22%), Positives = 237/627 (37%), Gaps = 77/627 (12%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR---AKKKVIISTG 71 P PR Q + + + + +G+ ++++A TG GKT L P L+ ++ + ++ Sbjct: 189 FPFATPRSGQVDLMRTIQEGMGEGRAMLLQAATGLGKTVGVLFPVLKEAFSRGQRVVYVT 248 Query: 72 SKALQDQLYSRDLPTVSKALKYTGNVALL-KGRSNYLCLERLEQQALAGGDLPVQILSDV 130 K Q + + +A ++ + KG+ +C + D P+ Sbjct: 249 PKNSQHAVAEDAVDRFQQAGSKIRSLTITAKGK---ICFK----------DEPLCDPGYC 295 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMD 190 R + + + DI ++ + S LG Y+ C + + Sbjct: 296 EYARDYYEKLHENDILAILARKRR------LKSRTFRQLGE---QYQVCPFELQLDASRE 346 Query: 191 ADVVVVNHHLFLA---------DMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS 241 AD+V+ +++ A DM + + G ++ DEAH LP A +Y+ Sbjct: 347 ADLVICDYNYVFAPRSALGRMTDMSIDQEG-------KPSLVIDEAHNLPGRAMEYYSPV 399 Query: 242 LSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLAN 301 LSS+ L L + + K+ QQL D L G G R L Sbjct: 400 LSSQHLEMLRHAMGDIHPPFNKEAQQL----------LDDCLATLTSCGGAGGSRPLRIT 449 Query: 302 PQIQRAFLLLDDTLELC---YDVAKLSLGRS-ALLDAAFERATLYRTRLKRLKEINQPGY 357 P ++ FL D+ L Y + +GR +L F + R Q + Sbjct: 450 PPLE-PFLEQDERLRALLNRYLDSGAEMGRQDPILGLCFSWSEFTRLLEYAADPERQEFF 508 Query: 358 SYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA 417 + W+ S + +T ++ KE A G + SATL D + S L E Sbjct: 509 TTWHPHGSGG-AVKITCCDASEMLKECYADY-GQVVAFSATLKPFD-YYARLSGLDPESV 565 Query: 418 ESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQ-----LAAMLRPIIEANNGRCFMLCT 472 + PSPF + LL + PQ + S R+ +A +R I G + Sbjct: 566 RTAEFPSPFPPELRKLLLI----PQVSTRYSRREANYGKIADAVRRIAGGRRGNYLVFLP 621 Query: 473 SHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVS---AGNA----LLVATSSFWEGV 525 S + + E FR VL Q K + +++ + AGN+ V SF EGV Sbjct: 622 SFPFLERVLELFRPPEGFVVLRQERDMKARQVEEVLERLRAGNSPTILFAVQGGSFSEGV 681 Query: 526 DVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLI 585 D G+ + + P + D + R E + R G F A+ Q GR+I Sbjct: 682 DYAGEMVIGAFVVGPPLPNYDFQREQMR-EYYQKRYGAGFPYAYTIPAMARAVQAAGRVI 740 Query: 586 RDADDRGVLVICDNRLVMRPYGATFLA 612 R DRG++V+ D+R + Y + A Sbjct: 741 RSETDRGLIVLMDDRFMDPEYSSAMPA 767 >UniRef50_Q7NKM8 Glr1449 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NKM8_GLOVI Length = 485 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 103/437 (23%), Positives = 170/437 (38%), Gaps = 75/437 (17%) Query: 193 VVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAK 252 V++ + FL D + S F PE +IFD AH L A Q Sbjct: 113 VLITDPLTFLRDRLRGGSHF----PEGVAVIFDGAHGLEQWAIQ---------------- 152 Query: 253 DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLD 312 + R E D L++ A+ D+++ L R L + P Sbjct: 153 --ALCERIEPADWDDLREGDFERAEFWLDWQVGLS--------RALSSQP---------- 192 Query: 313 DTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW--YECTSRHFTL 370 + A LS GR A L +A + + + P ++W Y S F+L Sbjct: 193 ------HHRAALSPGRQAELASALGESPPSEAWRRFRAALGAPERAHWVQYYRQSNQFSL 246 Query: 371 ALTPLSVA-DKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPS-PFDY 428 +P++VA D + L ++P + L + F S +G+E+ L P+ P + Sbjct: 247 VSSPIAVAGDLARALWPRQPA--VVIGEALDPAREARTFRSWVGLEEVTCLRFPADPREQ 304 Query: 429 SRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL----AEQF 484 Q L + P ++Q +Q+ +L + G +L + L A QF Sbjct: 305 EVQLYLPTQLSDPTSSQ--YRQQIEPVLVELAALAAGPLVILLPEGPLRSHLGTFLASQF 362 Query: 485 RATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTS 544 + + + + N + +A+ FWE + + + LPF Sbjct: 363 GSRVGI--------------HRLQPPPNGITLASWEFWEANHHHLGAPTTLAVCALPFPR 408 Query: 545 PDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMR 604 DDPL+ AR++ + R D F E LP A+ L++G+ L +G++ + DNR+ R Sbjct: 409 LDDPLVAARVQWLKDRRRDWFREYLLPVAIGRLQRGISPL---RQTQGLVALLDNRINHR 465 Query: 605 PYGATFLASLPPAPRTR 621 YG L +L PA R R Sbjct: 466 SYGGQLLDALTPARRLR 482 >UniRef50_A7I7C4 DEAD_2 domain protein n=5 Tax=Methanomicrobiales RepID=A7I7C4_METB6 Length = 712 Score = 71.6 bits (174), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 118/463 (25%), Positives = 193/463 (41%), Gaps = 74/463 (15%) Query: 188 AMDADVVVVN-HHLFLADMVVKESGFGEL-IPEADVMIF-DEAHQLPDIASQYFGQSLSS 244 A +ADVV++N HHLF D V++E + L + + DVM+ DEAH D+ QS+ S Sbjct: 257 AKNADVVILNYHHLF--DRVIREQLYANLNVEDQDVMLLIDEAHNCGDVI-----QSVES 309 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQ---SAQDFRLQLG---------EPG-- 290 L KDI A R EL ++L K A+ + +F L +PG Sbjct: 310 IALAQ--KDIEQATR-ELSGMRRLHKGAEAVQHVLPRLSEFMAGLANSSEPEDWFDPGIF 366 Query: 291 ----YRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRL 346 +G+L + + + ++D+ + L + + + + A ER TL+ RL Sbjct: 367 DRAIVKGSLWKDMGD--------IVDELMGLAETIREKNQKSGEFRETAIERLTLFMYRL 418 Query: 347 KRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLH 406 + N P Y Y+ T L + + + E+ + I S TLS D Sbjct: 419 S--QSANNPAYLTIYKRTDEGILLEVRNIDPSAPLTEICSTH-ACCILISGTLSPVDSFR 475 Query: 407 HFTSRLGIEQAE--SLLLPSPFDYSRQALLC-----VLRNLPQTNQPGSARQLAAMLRPI 459 RL A +L LP+ F + + C +L Q+ + + ++ + Sbjct: 476 ----RLYFNNASVATLALPNSFPKENRIICCANDITTAYSLRQSRE--NTEKIVQYITVF 529 Query: 460 IEANNGRC-----FMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVS----- 509 R + + S+A LA + + + + G L +F+S Sbjct: 530 AALKKNRAIYFPSYQILESYA---SLASSHISRRKIYIEPRDAAGAGAALNEFLSLPAQG 586 Query: 510 -AGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDP--FD 566 +G V + EG+D RG+ LS ++ LP +P + K +E R + GD F Sbjct: 587 DSGIMFAVCGGKWSEGLDYRGEMLSGAMVVGLPL-APFTRVRKMVIEYFRHKYGDEGEFL 645 Query: 567 EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV-MRPYGA 608 LP A+ Q +GR++R +DRGVLV + R + R Y A Sbjct: 646 CYTLP-AINRALQALGRVLRTPEDRGVLVFAERRFLEKRVYSA 687 >UniRef50_A0B9R4 Helicase c2 n=1 Tax=Methanosaeta thermophila PT RepID=A0B9R4_METTP Length = 739 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 159/677 (23%), Positives = 280/677 (41%), Gaps = 114/677 (16%) Query: 16 PGFKPREPQRQMAVAVTQAIEKGQP--LVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 P +P Q +M AV + G L+++A TG+GKT A A K++++ + Sbjct: 37 PSLRPH--QDEMLDAVYDVVSTGGHGVLMIDAPTGSGKTSCISAALAAAPGKIVVAVRTV 94 Query: 74 ALQDQLY----------SRDLPTVSKALK----------------YTGNVALLKGRSNYL 107 + Q +Y +R PTVS + Y + L +G NY+ Sbjct: 95 S-QIGVYLDEINRIWSNTRHRPTVSYLIGKQKACLLASEIWGESIYYACMRLREGSKNYM 153 Query: 108 C--LERLEQQAL--AGGDLPVQILSDVIL----LRSWSNQTVDGDI-----STCVSVAED 154 LER + ++P + + + LRS ++G + S V AE Sbjct: 154 ASRLERGHNDIYDPSRDEIPDEPPGERTVCPHYLRSKEAFEINGKVYFRSSSAAVDAAER 213 Query: 155 SQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVN-HHLF---LADMVVKES 210 + + G CP + + A+ +DV+++N HHLF D +++ Sbjct: 214 MSRRIVPVDALEKICGGVCPY--EVMSLHAKS----SDVIILNYHHLFSPDFQDAIIQWL 267 Query: 211 GFGELIPEADVM--IFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQL 268 G EAD M I DEAH L D + + L+ R +L+LA+ + L + Sbjct: 268 GL-----EADRMTVIVDEAHNLGDSVREMNTRVLTPR-ILELAEREINRFEKALGQAKLG 321 Query: 269 QKCADRLAQSAQDFRLQL-------GEPGYRGNLRELLANPQIQRAFLL--LDDT-LELC 318 ++ D + RL + R E+L + ++ R ++ +DD L L Sbjct: 322 EEHHDWRREGLSTARLLIPRIRRFIAAKEARSKDGEMLLDGELFRQYVYDGIDDIDLALS 381 Query: 319 Y--DVAKLSLGRSALLDAAFERATLY-------RTRLKRLKEINQPGYSYWYE------- 362 Y DVA +++ L ++ E TLY T + L+E+ + + Y+ Sbjct: 382 YLSDVA-VAIAEMKLAESDHE--TLYGDIQPSLATMVMFLREVEEAEHDSSYQRKIVTAS 438 Query: 363 CTSRHFT-LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESL 420 R +T L +T + A + ++ + + S TLS D + LG + +A + Sbjct: 439 SGERRWTRLEVTKIDPAPVIRRVV-DNVNATLMLSGTLSPIDAYELYC--LGEQGRARKI 495 Query: 421 LLPSPFDYSRQALLCVLR---NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 LP+PF S + ++ R L P + ++ + +IE G + TS+ MM Sbjct: 496 SLPNPFPQSNRLIIAAERATTQLSARENPDNRNLISGYISALIEEVPGNVAVFFTSYPMM 555 Query: 478 ---RDLAEQFRATMTLPVLLQGETSKG--QLLQQFVSAGNA-----LLVATSSFWEGVDV 527 RD +F V + +++ Q+L++F AG + L V+ EG+D Sbjct: 556 ASYRDACARFARGAGKKVFTEPRSAEDVPQILEEFFRAGRSAGAVLLGVSGGKLAEGIDY 615 Query: 528 RGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEV---QLPDAVITLKQGVGRL 584 +G+ L+ V + LP + D+ + K + + G + LP A+ Q GR+ Sbjct: 616 KGEALNGVAVVGLPLSVFDE-IQKEVISYYTHKYGKKRGTLIAYTLP-AINRGLQAAGRV 673 Query: 585 IRDADDRGVLVICDNRL 601 IR +RGV+++CD+R Sbjct: 674 IRAESERGVILLCDSRF 690 >UniRef50_A8MJA6 DEAD_2 domain protein n=11 Tax=Clostridia RepID=A8MJA6_ALKOO Length = 800 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 147/639 (23%), Positives = 247/639 (38%), Gaps = 106/639 (16%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIIS----- 69 P R+ QR++AVAV + I++ + L +A TG GKT + L P ++A + I S Sbjct: 196 FPFSNYRKGQRELAVAVYRTIKEEKKLFAQAPTGIGKTISTLFPTVKAIGEGITSKVFYL 255 Query: 70 ---TGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL-----EQQALAGG- 120 T ++ + ++ +SR S L++ K + +C E+ E+ + A G Sbjct: 256 TAKTITRQVAEEAFSR---MKSMGLRFKTVTLTAKDK---ICFEKGKQCNPEECSFAKGH 309 Query: 121 -DLPVQILSDVILLRSWSNQTVDGDISTCVSV-AEDSQAWPLVTSTNDNCLGSDCPMYKD 178 D L+D+ Q D + A+ Q P S + Sbjct: 310 FDRVKSGLADLF-------QNEDSFTREIIEFYAQRHQICPFEFSLD------------- 349 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYF 238 A+ AD V+ +++ V + F + + +I DEAH L D + F Sbjct: 350 --------IAIWADGVICDYNYVFDPRVYLKRFFADEKGDYTFLI-DEAHNLVDRSRGMF 400 Query: 239 GQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLREL 298 ++ + L+ R +Q++ K D+L + R + GE + E Sbjct: 401 SAEINKKIFLEQK-------RVMKHQSQKVYKTLDKLNAFMIEARKKCGEHSFYIQKEEN 453 Query: 299 LANPQIQRAFLLLDDTL-------ELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKE 351 + +F+ D L + D+ +L A L A Y R + E Sbjct: 454 TEIYHLLASFVRETDELFKEGYQMDENKDLLELYFNAFAFLKIA----EFYDERYRTYIE 509 Query: 352 INQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPG-SWIFTSATLSVNDDLHHFTS 410 Q + C + L A K G + IF SATL+ L +F Sbjct: 510 KRQGDVFFKIFCLDPSYLLG-------------EAIKRGRTAIFFSATLT---PLPYFKE 553 Query: 411 RLG-IEQAESLLLPSPFDYSRQALLCV-LRNLPQTNQPGSARQLAAMLRPIIEANNGRCF 468 LG E+ ++ L SPF+ L+ + N+ S +A ++ + E G F Sbjct: 554 ILGGAEEDYAIRLGSPFESENLGLMVADYISTKYRNRDRSYIHIADVIAKVSEGKTGNYF 613 Query: 469 MLCTSHAMMRDLAEQFRATM-TLPVLLQGETSKGQLLQQFVSAGN--------ALLVATS 519 + S+ MR + + F + VL Q +T + ++F++ A V Sbjct: 614 VFFPSYQYMRRVLDVFVEEYPHINVLQQQQTMTEEEREEFLNKFEDQPERTSIAFGVLGG 673 Query: 520 SFWEGVDVRGDTLSLVIIDK--LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITL 577 F EGVD+ G+ L VII LP S + L+ ME + ++ + + + Sbjct: 674 IFSEGVDLVGERLIGVIIIGVGLPQLSLEVNLI---MEYFNQKNNKGYEYAYMFPGMNKV 730 Query: 578 KQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPP 616 QG GR+IR DRG++ + D+R Y A F PP Sbjct: 731 LQGAGRVIRTETDRGIVCLVDDRFTSYGYQALF----PP 765 >UniRef50_Q8DJI3 Tlr1240 protein n=1 Tax=Thermosynechococcus elongatus BP-1 RepID=Q8DJI3_THEEB Length = 490 Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/269 (26%), Positives = 119/269 (44%), Gaps = 23/269 (8%) Query: 364 TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLP 423 T+ +FTL PL++ F++L Q P ++ + + L + LGI ++ Sbjct: 241 TAGYFTLHSHPLNLRPYFQDLWCQAP--FVLIGSGPDTDPPLAYVQQELGIPAQTTIKFA 298 Query: 424 SPFDYSRQALLCVLRNLPQTNQPGSA----RQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 S +S L + +LP N P A R+L +L I + R +L + + Sbjct: 299 SD-RHSEAITLAIAEDLPLPNTPEFAPAVLRRLYDLLGTI---GHQRAVILVSDVPLREQ 354 Query: 480 LAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDK 539 LA Q A V Q ET+ + N +LV +FW + +L+++ Sbjct: 355 LATQLAALYGSRV--QVETTTLE--------TNTILVTGETFWLRHGAQLPCPALLVLTT 404 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LPF SP+ ++ AR+E + + D F + LP+ + L + + + D ++ I D Sbjct: 405 LPFPSPEKAVVSARIEWHKRQKQDWFRQYLLPECLTVLDRALAPV---RQDDTLVAILDR 461 Query: 600 RLVMRPYGATFLASLPPAPRTRDIARAVR 628 RL R YG L SL P R RD A++ R Sbjct: 462 RLTERSYGREILQSLSPYNRVRDRAQSPR 490 >UniRef50_C6NY64 DinG family ATP-dependent helicase YoaA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NY64_9GAMM Length = 726 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 80/258 (31%), Positives = 119/258 (46%), Gaps = 29/258 (11%) Query: 43 VEAGTGTGKTYAYLAPAL----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTG--- 95 +EAGTG GKT YL P L + KK+V IST ++ Q Q+ ++DL V + + + G Sbjct: 60 IEAGTGVGKTIGYLVPLLEYASQHKKRVGISTYTRFQQRQV-AKDLALVQQRI-FDGLDL 117 Query: 96 NVALLKGRSNYLCLERLE--QQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAE 153 VA+ GR N++ ER+ ++ L G DLP + W +++ D +T ++ E Sbjct: 118 QVAIRLGRQNFVSRERVAFWRERLKGTDLPKAWEDFFAWVDRW-DESTDPLDTTFLAWRE 176 Query: 154 DSQAWPLVT--STNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESG 211 P + + D L D P + K A ADVV+ NH L +K Sbjct: 177 IYPDMPEFSGLAEEDFALREDEPH---AWYEAHAKAAQSADVVITNHATLLIHGALKTGL 233 Query: 212 FGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKC 271 G+L D ++ DEA QL A QSL SR+L A + R + D ++ Sbjct: 234 LGDL----DAVVVDEADQLISAA-----QSLLSRRL--RASLVVRDLRRQYPDPREFDFA 282 Query: 272 ADRL-AQSAQDFRLQLGE 288 R A + QD +LGE Sbjct: 283 EARQEADAIQDLLRELGE 300 >UniRef50_C0D1I1 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D1I1_9CLOT Length = 829 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 109/455 (23%), Positives = 189/455 (41%), Gaps = 55/455 (12%) Query: 191 ADVVVVNHHLFLADMVVKESGFGE-LIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLD 249 AD ++ +++ V + F E P + + DEAH L A + F L L Sbjct: 350 ADGIICDYNYVFDPNVRLKRYFAEGSTPGEYLFLVDEAHNLVPRAREMFSAGLLKEDFL- 408 Query: 250 LAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLG-EPGYRGNLRELLANPQIQRAF 308 L K I + +QL++C L + F + G E G R R +L R + Sbjct: 409 LVKRILKGKDGAERTVRQLERCNKELLNLKRAFAAEEGGEEGVRQ--RSVLG-----RDY 461 Query: 309 LLLDDT----LEL--------CYDVAKLSLG-RSALLDAAFE-RATLYRTRLKRLKEINQ 354 LL+D LEL + L G R +LD F+ R LY RL + N Sbjct: 462 QLLEDVNLLYLELSGLFSELEAFMNEHLEFGDRDLVLDFYFQVRDFLYVH--DRLDD-NY 518 Query: 355 PGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 YS+ E S F + L ++ + +E + Q + F++ L + ++ L Sbjct: 519 RIYSWLLEDGS--FLVKLMCINPSVNLRECLDQGRSTLFFSATLLPI----QYYKELLSG 572 Query: 415 EQAE-SLLLPSPFDYSRQALLCV--LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLC 471 +Q+E ++ SPFD + ++ + ++ + ++A + I+ A G + C Sbjct: 573 DQSEYAVYANSPFDSENRLIVAASDVSSIYRRRNRREYERVAGYIVEIVGARKGNYMVFC 632 Query: 472 TSHAMMRDLAEQF-----RATMTLPVLLQG----ETSKGQLLQQFVSAGN-----ALLVA 517 S+ + + E F R + + Q E + + L +F G+ AL V Sbjct: 633 PSYQYLHAVEEVFVQLEERGELPFAWISQSSHMREEEREEFLARFARPGDGRSLAALCVM 692 Query: 518 TSSFWEGVDVRGDTL--SLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVI 575 F EG+D++ + L ++VI LP + + +L+ ++ GG F + Sbjct: 693 GGIFSEGIDLKEEQLIGAIVIGTGLPQVNVEQEILREYFDE---HGGQGFSYAYQYPGMN 749 Query: 576 TLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATF 610 + Q GR+IR A D+GV+ + D+R + Y A F Sbjct: 750 KVMQAAGRVIRTATDQGVIALLDDRFLKSDYQALF 784 >UniRef50_C7RHR2 DEAD_2 domain protein n=4 Tax=Anaerococcus RepID=C7RHR2_ANAPD Length = 777 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 105/230 (45%), Gaps = 18/230 (7%) Query: 391 SWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLP--QTNQPGS 448 S IF SATLS + F + LG + L L PF S + L+ + +++ ++ + Sbjct: 527 STIFFSATLS---PMPFFMNMLGARDSLKLRLDMPF--SSENLIILQKSISTRYRDRSRN 581 Query: 449 ARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGET----SKGQLL 504 ++ ++ I + G F+ S + + +A + + +L+Q + + + + Sbjct: 582 VSLISDLINEFINSKEGNYFIFFPSFSYLEAVAGDYTVRYSDDILIQDRSMSQLDRSKFI 641 Query: 505 QQFVSAGN--ALLVATSSFWEGVDVRGDTL--SLVIIDKLPFTSPDDPLLKARMEDCRLR 560 ++F N A +V F EGVD+ GD L S++I +P S D L+K + L Sbjct: 642 KKFTEESNEVAFVVLGGIFSEGVDLIGDRLIGSMIISVGMPGVSFDRNLIKEHFDREGLS 701 Query: 561 GGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATF 610 G FD + + Q GR+IR DDRG++ + D+R Y F Sbjct: 702 G---FDYSYTFPGINKVFQAAGRVIRSEDDRGIIYLVDDRYSWNQYQMLF 748 >UniRef50_Q5UF23 Predicted Rad3-related DNA helicases n=1 Tax=uncultured alpha proteobacterium EBAC2C11 RepID=Q5UF23_9PROT Length = 575 Score = 69.7 bits (169), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 91/188 (48%), Gaps = 16/188 (8%) Query: 422 LPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 SPFDY Q + V+ +L + +A +AA++ I A G L T+ +R + Sbjct: 371 FSSPFDYGNQTRILVVNDLDRNRPEATASAMAALM---IAAGGG-SLGLFTAIRRLRAVY 426 Query: 482 EQFRATMT---LPVLLQ--GETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 A + LP+ Q + + LL F + L+ T + +G+DV G L L++ Sbjct: 427 PALAAHLDIAGLPLYAQHIDKMNLQTLLAMFREDPESCLLGTDAVRDGIDVPGAALRLIV 486 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 D++P+ D L AR + +G D + E Q + L+Q GRLIR DDRGV V+ Sbjct: 487 FDRMPWPRSD-ILFSAR---AKWQGRDTWTERQ---TRLRLRQAFGRLIRRDDDRGVFVM 539 Query: 597 CDNRLVMR 604 D+RL R Sbjct: 540 LDSRLPTR 547 Score = 52.4 bits (124), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 3/84 (3%) Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDE 226 C+ + CP Y CFV K+ + A AD+V+ NH L MV G + +FDE Sbjct: 9 ECIHAACPHYDRCFVEKSIRGAKRADIVITNHALV---MVQAAYGNKDDRRTPTRYVFDE 65 Query: 227 AHQLPDIASQYFGQSLSSRQLLDL 250 H + D A F LS R+ +L Sbjct: 66 GHHVFDAADSAFSAYLSGRETAEL 89 >UniRef50_D1VTJ3 DEAD family protein n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTJ3_9FIRM Length = 765 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 105/436 (24%), Positives = 173/436 (39%), Gaps = 69/436 (15%) Query: 195 VVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ--SLSSRQLLD--L 250 ++ + + D +V F E E+ V + DEAH L D A + + +L+ LLD L Sbjct: 348 IIGDYNYAFDPIVYLKRFFEGSLESYVFLIDEAHNLVDRAREMYSAEFNLNDLMLLDEYL 407 Query: 251 AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLL 310 K + I LK + A S Q F NL E L L Sbjct: 408 PKSLKINRANNLKAISEFNLLAKTRFFSYQAFE----------NLNEALEKLMYSLNDYL 457 Query: 311 LDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF-- 368 + + YD +L+ F N Y+ Y+ ++ F Sbjct: 458 IKYKEDEHYD---------EILNIYF----------------NLFSYNKIYQYYNKDFVS 492 Query: 369 -----TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLL 422 T+ + L D FK+ + S +F SATL + L ++ + LG E + Sbjct: 493 VKEENTIKILCLDSGDIFKDFLKNARAS-VFFSATL---EPLKYYGNLLGADENTYYYKI 548 Query: 423 PSPFDYSRQALLCVLRNLPQTNQPGSARQLAA---MLRPIIEANNGRCFMLCTSHAMMRD 479 SPFD ++ L VLR+ + A L + G S+A M Sbjct: 549 KSPFDTNK---LLVLRDKKILTTYRYRKNFVADIVRLLKLFTEKKGNYIFFFPSYAYMEM 605 Query: 480 LAEQFRATMTLPVLLQG----ETSKGQLLQQFVSAGN--ALLVATSSFWEGVDVRGDTLS 533 + E+++ + V++Q ET + + L +F + A V +F EG+D+ G L Sbjct: 606 VYEEYKK-IDEKVIIQSRQMTETDRSEFLLKFKFQEDLRAFAVMGGAFSEGIDLLGKRLI 664 Query: 534 LVIIDK--LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 V I +P S + +LK + +L+ G +D + ++ + Q GR+IR DD+ Sbjct: 665 GVAIISVGIPQISFERNILKNHFQK-KLKKG--YDYAYIYPGMVKVNQSGGRVIRSEDDK 721 Query: 592 GVLVICDNRLVMRPYG 607 GV+++ D R + PY Sbjct: 722 GVVLLIDKRFSIEPYS 737 >UniRef50_Q5N3R1 Carboxyl-terminal protease n=2 Tax=Synechococcus elongatus RepID=Q5N3R1_SYNP6 Length = 501 Score = 68.9 bits (167), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 64/115 (55%), Gaps = 3/115 (2%) Query: 510 AGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQ 569 A N++ + + S W G+ + T + + I LPF S + PL AR+E + + D F E Sbjct: 374 ADNSIHLCSMSTWLGLQSQRPTPTAIAIASLPFASAEQPLTAARIEFYKQQRWDWFREFL 433 Query: 570 LPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA 624 LPDA++ L+Q + L +++ G+L I D RL R YG FL ++ P+ R ++ Sbjct: 434 LPDALMQLQQAIAPLRKNS---GLLAIYDGRLQRRSYGQAFLEAIAPSEHLRQLS 485 >UniRef50_Q03DH3 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03DH3_PEDPA Length = 783 Score = 68.6 bits (166), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 143/646 (22%), Positives = 264/646 (40%), Gaps = 95/646 (14%) Query: 21 REPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLY 80 R QR +AVAV + I Q L VEA TGTGKT + + P + KAL +++ Sbjct: 190 RNGQRDLAVAVYKTILTKQRLFVEAPTGTGKTVSTMFPTI------------KALGEEVI 237 Query: 81 SRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ-----ILSDVILLRS 135 R +K + T +VA +E + Q L + + I + + ++ Sbjct: 238 ERIFYLTAK--QSTQHVA-------EEAIELMANQGLRIKSITITAKDRIIFPEEVDMKP 288 Query: 136 WSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADV-- 193 N + G ED+ D + Y +++ + ++D + Sbjct: 289 EENPYMIGYYDRVKDGIEDA------LENEDKFDKAVIQTYAKKYMLDPFEFSLDLSLFC 342 Query: 194 -VVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAK 252 +++ + +L D +V F + +++ + DEAH L + + ++ + L+ A+ Sbjct: 343 DLIIGDYNYLFDPMVYLQRFFTIEDQSNFFLIDEAHNLVSRSRAMYS-AVVEQALVIQAQ 401 Query: 253 DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA--NP--QIQRAF 308 ++ A T++ D++Q+++ RL Q +F +L ++ ++ + NP +++A Sbjct: 402 ELFEASTTDV-DSKQVKR---RLTQLDNEF--ELIHQAFKNQTKDYMVEYNPLDGLEKAM 455 Query: 309 LLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF 368 L ++ + + S +LD F + ++ E Y + + Sbjct: 456 LNFNEVVREWLPKQPDNDLTSTILDLFFAN-----NKYIKISEYFDESYRILIQNPEDNI 510 Query: 369 TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDY 428 + L + + + G+ IF SATLS + ++ LG + L + SPF+ Sbjct: 511 KIEEQILDPSPYLDASLKKGRGA-IFFSATLS---PVEYYQETLGSTEGLILQMASPFEE 566 Query: 429 SRQALLCV----------LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 +Q LL RNLP + A + ++EA G + S+A + Sbjct: 567 KQQNLLITSYIDTRYAARQRNLPN---------IIASIATLVEAKTGNYLIFGPSYAYLN 617 Query: 479 DLAEQFRATMTLPVLLQGETSKGQL------LQQFVSAGNALLVATSS----FWEGVDVR 528 +A+ F+ M + +Q +TS+ + L F + + LV + F EG+D+ Sbjct: 618 QIADAFQE-MHPEIEVQLQTSQMSMEERTAFLDAFRTEKSGTLVGFAVLGGLFSEGIDLI 676 Query: 529 GDTLSLVIIDK--LPFTSPDDPLLKARMEDCRLRGGDPFD-EVQLPDAVITLKQGVGRLI 585 + L V I LP S + LLK ++ + G F+ QLP L Q GRLI Sbjct: 677 NEQLIGVGIVSVGLPGLSTERNLLKEYFDE---KNGHGFEYAYQLPGMNHVL-QSAGRLI 732 Query: 586 RDADDRGVLVICDNRLVMRPYGATF---LASLPPAPRTRDIARAVR 628 R DRG +++ D R V Y F + D+ +AV+ Sbjct: 733 RTRRDRGNILLMDQRFVTSRYLNLFPGHWKNYQKVTSVSDLQKAVK 778 >UniRef50_D1PKE7 Putative helicase c2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKE7_9FIRM Length = 494 Score = 68.2 bits (165), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 68/261 (26%), Positives = 113/261 (43%), Gaps = 29/261 (11%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR--------AKKKVII 68 G RE Q ++ A+ + + +AG G GKTYAYL + ++ V+I Sbjct: 30 GMNVREGQIRLCHAMLDTLFGRDVALCDAGVGLGKTYAYLVACVLWQLQRPRPMQRPVVI 89 Query: 69 STGSKALQDQLYSRDLPTVSKALKYTGNV------ALLKGRSNYLCLERL---EQQALAG 119 ST S LQ+ + +P +S AL G + L KG+ ++C RL ++Q A Sbjct: 90 STASITLQNAILEEYIPFLSDALIQNGYIQAPVCAVLRKGKERFVCDVRLLIRQKQITAR 149 Query: 120 GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 G + L+ + Q +D D + E + C S C + DC Sbjct: 150 GK---RFRKRAPALQE-ARQCLDLDRLPNLPRHERR-----LICVPSRCARS-CIAHTDC 199 Query: 180 FVVKARKKAMDADVV--VVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 + K + V V NH+ LAD +++G+ L+ + ++ DEAH+LP+ Q Sbjct: 200 RYRQYLKASNGPSVTIQVCNHNYLLADAAHRKNGWTPLLKDYQALVIDEAHKLPETVRQM 259 Query: 238 FGQSLSSRQLLDLAKDITIAY 258 + + S +LL K +T + Sbjct: 260 NTRRICSAELLAYEKLLTAGH 280 Score = 46.6 bits (109), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 6/94 (6%) Query: 387 QKPGSWIFTSATLSVNDDLHHFTSRLGIEQA---ESLLLPSPFDYSRQALLCVLRNLPQT 443 QKP I TS TL+ +D H R+G+++ +L + SPFDY + +L + + Sbjct: 401 QKPA--ILTSGTLAAGEDFSHTEKRMGLDRGTPLRTLKVLSPFDYEKNCMLYFPESRRRK 458 Query: 444 NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 ++P R +A + ++ A NG +L TS+ M Sbjct: 459 SEPEEER-IARQIEELVCAANGHTLVLFTSYDQM 491 >UniRef50_A9KRY0 DEAD_2 domain protein n=2 Tax=Clostridiales RepID=A9KRY0_CLOPH Length = 852 Score = 68.2 bits (165), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 60/238 (25%), Positives = 111/238 (46%), Gaps = 22/238 (9%) Query: 387 QKPGSWIFTSATLSVNDDLHHFTSRLG-IEQAESLLLPSPFDYSRQALLCVLRNLPQTNQ 445 K S IF SATL + ++ +LG E+ ++ PSPF+ S++ L+ + + Sbjct: 595 NKGRSSIFFSATLL---PITYYKEQLGGSEEDYAIYAPSPFEVSKRLLMIAKDVSTKYTR 651 Query: 446 PG--SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQL 503 G ++ + + + A G F+ S+ M++ +A+ + +P LL +TS G+L Sbjct: 652 RGQDEYERIVSYIEGFVNAKVGNYFVFFPSYQMLQQIAQL--SEDRIPNLLLQKTSMGEL 709 Query: 504 -LQQFVSAGN--------ALLVATSSFWEGVDVRGDTL--SLVIIDKLPFTSPDDPLLKA 552 ++F++A V F EG+D++ D L ++++ LP + L + Sbjct: 710 EKEEFLAAFEENPTNTKVGYCVMGGIFSEGIDLKKDRLIGAVIVGTGLPQVGNERELFRG 769 Query: 553 RMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATF 610 +D R G FD L + + Q GR+IR +D+G +++ D R + Y F Sbjct: 770 YYDD---RNGSGFDHAYLYPGINKVLQSAGRVIRTVEDKGAILLLDERFLNSQYKNLF 824 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P44680 Probable ATP-dependent helicase HI0387 n=261 Tax... 766 0.0 UniRef50_C4LDA1 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=C4... 742 0.0 UniRef50_A1SX28 ATP-dependent helicase, DinG family protein n=8 ... 713 0.0 UniRef50_B5JSI7 Helicase c2 n=1 Tax=gamma proteobacterium HTCC50... 705 0.0 UniRef50_C5V4E9 Helicase c2 n=3 Tax=Betaproteobacteria RepID=C5V... 695 0.0 UniRef50_Q0VQH3 Probable ATP-dependent helicase n=2 Tax=Alcanivo... 683 0.0 UniRef50_B8GRE0 Helicase c2 n=6 Tax=Chromatiales RepID=B8GRE0_THISH 678 0.0 UniRef50_C7RB18 Helicase c2 n=1 Tax=Kangiella koreensis DSM 1606... 675 0.0 UniRef50_C0N252 Putative uncharacterized protein n=1 Tax=Methylo... 667 0.0 UniRef50_UPI0000E87EB6 Helicase c2:DEAD/DEAH box helicase, N-ter... 665 0.0 UniRef50_A6GN94 Helicase c2 n=1 Tax=Limnobacter sp. MED105 RepID... 658 0.0 UniRef50_D0KYH8 Helicase c2 n=1 Tax=Halothiobacillus neapolitanu... 658 0.0 UniRef50_A0L5B4 Helicase c2 n=1 Tax=Magnetococcus sp. MC-1 RepID... 655 0.0 UniRef50_A0KWC1 Helicase c2 n=22 Tax=Gammaproteobacteria RepID=A... 652 0.0 UniRef50_B5EML2 Helicase c2 n=2 Tax=Acidithiobacillus ferrooxida... 652 0.0 UniRef50_B2SXR3 Helicase c2 n=26 Tax=Burkholderiales RepID=B2SXR... 651 0.0 UniRef50_Q31G59 Putative uncharacterized protein n=1 Tax=Thiomic... 643 0.0 UniRef50_Q1IHL6 Helicase c2 n=3 Tax=Acidobacteria RepID=Q1IHL6_A... 643 0.0 UniRef50_B2JIT4 Helicase c2 n=59 Tax=Betaproteobacteria RepID=B2... 640 0.0 UniRef50_B4ST01 Helicase c2 n=23 Tax=Gammaproteobacteria RepID=B... 635 e-180 UniRef50_Q5ZU85 ATP dependent DNA helicase (DEAD box family) Rad... 634 e-180 UniRef50_B9ZQY0 Helicase c2 n=1 Tax=Thioalkalivibrio sp. K90mix ... 634 e-180 UniRef50_A0LLQ3 Helicase c2 n=1 Tax=Syntrophobacter fumaroxidans... 627 e-178 UniRef50_Q1CXN9 Putative ATP-dependent helicase n=1 Tax=Myxococc... 624 e-177 UniRef50_Q6AMF2 Related to ATP-dependent helicase n=2 Tax=Proteo... 623 e-177 UniRef50_A9IIW5 Probable ATP-dependent helicase n=6 Tax=Proteoba... 617 e-175 UniRef50_Q1NJC5 Helicase c2 n=2 Tax=delta proteobacterium MLMS-1... 614 e-174 UniRef50_C8R1Z3 Helicase c2 n=1 Tax=Desulfurivibrio alkaliphilus... 612 e-173 UniRef50_C6NRY2 DinG family ATP-dependent helicase YoaA n=1 Tax=... 611 e-173 UniRef50_C7I1U8 Helicase c2 n=1 Tax=Thiomonas intermedia K12 Rep... 611 e-173 UniRef50_D0LRT5 Helicase c2 n=1 Tax=Haliangium ochraceum DSM 143... 608 e-172 UniRef50_C8N856 ATP-dependent helicase n=1 Tax=Cardiobacterium h... 605 e-171 UniRef50_A6C6H8 ATP-dependent helicase, DinG family protein n=1 ... 595 e-168 UniRef50_B1XY97 Helicase c2 n=2 Tax=Burkholderiales Genera incer... 590 e-167 UniRef50_C1ZB20 DNA helicase, Rad3 n=3 Tax=Planctomycetaceae Rep... 590 e-167 UniRef50_Q0F3T0 ATP-dependent helicase n=1 Tax=Mariprofundus fer... 588 e-166 UniRef50_A9GFB8 ATP-dependent helicase n=2 Tax=Myxococcales RepI... 586 e-165 UniRef50_A5EVG8 Helicase domain protein n=1 Tax=Dichelobacter no... 585 e-165 UniRef50_C9YB00 Putative uncharacterized protein n=1 Tax=Curviba... 585 e-165 UniRef50_D1AJB0 Helicase c2 n=5 Tax=Fusobacteriaceae RepID=D1AJB... 581 e-164 UniRef50_C8W6D5 Exonuclease RNase T and DNA polymerase III n=1 T... 580 e-164 UniRef50_B4D6W3 Helicase c2 n=2 Tax=Verrucomicrobia RepID=B4D6W3... 578 e-163 UniRef50_B2A1E9 Helicase c2 n=1 Tax=Natranaerobius thermophilus ... 578 e-163 UniRef50_C3WBH3 ATP-dependent helicase DinG n=2 Tax=Fusobacteriu... 575 e-162 UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Ther... 574 e-162 UniRef50_D1N0Q3 Helicase c2 n=1 Tax=Victivallis vadensis ATCC BA... 572 e-161 UniRef50_A5TWB3 ATP-dependent helicase n=14 Tax=Fusobacterium Re... 571 e-161 UniRef50_Q1K3T5 Helicase c2 n=1 Tax=Desulfuromonas acetoxidans D... 571 e-161 UniRef50_C6JKU1 ATP-dependent helicase n=2 Tax=Fusobacterium Rep... 570 e-161 UniRef50_Q1PXS1 Similar to ATP-dependent DNA helicase (DNA-damag... 566 e-160 UniRef50_D2QZI1 Helicase c2 n=2 Tax=Planctomycetaceae RepID=D2QZ... 566 e-160 UniRef50_B8CW80 Helicase c2 n=1 Tax=Halothermothrix orenii H 168... 565 e-159 UniRef50_B6BV17 Helicase c2 n=1 Tax=beta proteobacterium KB13 Re... 565 e-159 UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helic... 565 e-159 UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 564 e-159 UniRef50_B3DY63 Rad3-related DNA helicase n=1 Tax=Methylacidiphi... 563 e-159 UniRef50_B9XI74 Helicase c2 n=1 Tax=bacterium Ellin514 RepID=B9X... 562 e-158 UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2... 562 e-158 UniRef50_Q39QU4 Helicase c2 n=11 Tax=Bacteria RepID=Q39QU4_GEOMG 557 e-157 UniRef50_D0J804 Helicase c2 n=4 Tax=Comamonadaceae RepID=D0J804_... 557 e-157 UniRef50_B2URD7 Helicase c2 n=1 Tax=Akkermansia muciniphila ATCC... 556 e-157 UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1... 556 e-157 UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chlo... 555 e-156 UniRef50_A1W6Z0 Helicase c2 n=5 Tax=Comamonadaceae RepID=A1W6Z0_... 553 e-155 UniRef50_A6DIX1 ATP-dependent helicase, DinG family protein n=1 ... 551 e-155 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 551 e-155 UniRef50_D0LMW6 Helicase c2 n=3 Tax=Haliangium ochraceum DSM 143... 551 e-155 UniRef50_A7HIV0 Helicase c2 n=4 Tax=Anaeromyxobacter RepID=A7HIV... 549 e-154 UniRef50_Q6MEU9 Putative ATP-dependent DNA helicase dinG n=2 Tax... 549 e-154 UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotom... 548 e-154 UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4... 545 e-153 UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase... 541 e-152 UniRef50_C1A7T8 Putative ATP-dependent DNA helicase n=1 Tax=Gemm... 541 e-152 UniRef50_A9BWB5 Helicase c2 n=2 Tax=Comamonadaceae RepID=A9BWB5_... 540 e-152 UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 539 e-151 UniRef50_Q7NN01 Gll0614 protein n=1 Tax=Gloeobacter violaceus Re... 534 e-150 UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-rel... 533 e-149 UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep... 532 e-149 UniRef50_Q73L75 ATP-dependent helicase, DinG family n=3 Tax=Trep... 531 e-149 UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI... 530 e-149 UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:Dna... 523 e-146 UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T... 521 e-146 UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus... 518 e-145 UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca... 516 e-145 UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri... 516 e-145 UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class... 515 e-144 UniRef50_C5VAL7 ATP-dependent helicase n=14 Tax=Corynebacterinea... 514 e-144 UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R... 514 e-144 UniRef50_B1ZV97 Helicase c2 n=2 Tax=Opitutaceae RepID=B1ZV97_OPITP 511 e-143 UniRef50_D1AXI2 Helicase c2 n=1 Tax=Streptobacillus moniliformis... 511 e-143 UniRef50_C0QZ08 Helicase n=2 Tax=Brachyspira RepID=C0QZ08_BRAHW 510 e-143 UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1... 509 e-142 UniRef50_B0S8U2 DNA helicase n=6 Tax=Leptospira RepID=B0S8U2_LEPBA 508 e-142 UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1... 508 e-142 UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2... 507 e-142 UniRef50_D0MD62 Helicase c2 n=1 Tax=Rhodothermus marinus DSM 425... 504 e-141 UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, pu... 503 e-141 UniRef50_A0YCJ4 Helicase c2 n=1 Tax=marine gamma proteobacterium... 499 e-139 UniRef50_D0L9M3 Helicase c2 n=6 Tax=Actinomycetales RepID=D0L9M3... 498 e-139 UniRef50_C7QD23 Helicase c2 n=3 Tax=Actinomycetales RepID=C7QD23... 497 e-139 UniRef50_A8LYP2 Helicase c2 n=13 Tax=Actinomycetales RepID=A8LYP... 496 e-139 UniRef50_P29741 Probable ATP-dependent helicase dinG homolog n=5... 494 e-138 UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7... 491 e-137 UniRef50_P64315 Probable ATP-dependent helicase dinG homolog n=1... 490 e-137 UniRef50_Q0AXW2 Putative uncharacterized protein n=1 Tax=Syntrop... 487 e-136 UniRef50_C0W0F4 ATP-dependent DNA helicase n=1 Tax=Actinomyces c... 486 e-135 UniRef50_C7NJ65 DNA helicase, Rad3 n=28 Tax=Actinomycetales RepI... 486 e-135 UniRef50_A7BD43 Putative uncharacterized protein n=1 Tax=Actinom... 484 e-135 UniRef50_B2S179 ATP-dependent helicase, DinG family n=4 Tax=Borr... 483 e-134 UniRef50_B8CRB2 Helicase c2 n=45 Tax=Gammaproteobacteria RepID=B... 482 e-134 UniRef50_Q1MXU1 ATP-dependent helicase DinG n=1 Tax=Bermanella m... 482 e-134 UniRef50_D1SEM0 Helicase c2 n=2 Tax=Micromonospora RepID=D1SEM0_... 482 e-134 UniRef50_B4RPD7 DinG n=35 Tax=Proteobacteria RepID=B4RPD7_NEIG2 480 e-134 UniRef50_C2BW38 ATP-dependent helicase DinG n=3 Tax=Mobiluncus R... 478 e-133 UniRef50_D1C098 Helicase c2 n=10 Tax=Actinomycetales RepID=D1C09... 478 e-133 UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependen... 476 e-133 UniRef50_D1YCN3 ATP-dependent helicase DinG n=3 Tax=Propionibact... 476 e-133 UniRef50_A6VX61 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=A6... 475 e-132 UniRef50_C1MEF3 DNA helicase n=1 Tax=Citrobacter sp. 30_2 RepID=... 471 e-131 UniRef50_A4A9L6 ATP-dependent helicase, DinG n=4 Tax=unclassifie... 470 e-131 UniRef50_C1TS05 DNA helicase, Rad3 n=1 Tax=Dethiosulfovibrio pep... 470 e-130 UniRef50_C5BWL9 Helicase c2 n=14 Tax=Actinomycetales RepID=C5BWL... 470 e-130 UniRef50_Q21I38 Helicase c2 n=16 Tax=Gammaproteobacteria RepID=Q... 468 e-130 UniRef50_Q1QX31 Helicase c2 n=9 Tax=Gammaproteobacteria RepID=Q1... 468 e-130 UniRef50_Q482M5 ATP-dependent helicase DinG n=3 Tax=Gammaproteob... 467 e-130 UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atop... 466 e-129 UniRef50_A1U100 Helicase c2 n=3 Tax=Marinobacter RepID=A1U100_MARAV 466 e-129 UniRef50_Q2SIT1 Rad3-related DNA helicase n=1 Tax=Hahella chejue... 465 e-129 UniRef50_Q2BMS2 Helicase, putative n=1 Tax=Neptuniibacter caesar... 464 e-129 UniRef50_Q47MW9 Helicase c2:DEAD/DEAH box helicase, N-terminal n... 459 e-127 UniRef50_A1WTY2 Helicase c2 n=1 Tax=Halorhodospira halophila SL1... 459 e-127 UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collins... 458 e-127 UniRef50_A3EQ06 Probable ATP-dependent DNA helicase n=2 Tax=Lept... 458 e-127 UniRef50_C9M767 Putative ATP-dependent helicase n=1 Tax=Jonquete... 458 e-127 UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 457 e-127 UniRef50_B2SSY1 ATP-dependent helicase n=13 Tax=Xanthomonadaceae... 456 e-126 UniRef50_A1VJJ6 Helicase c2 n=2 Tax=Polaromonas naphthalenivoran... 454 e-126 UniRef50_Q1YS96 ATP-dependent helicase DinG n=1 Tax=gamma proteo... 452 e-125 UniRef50_Q8L2A4 DNA helicase n=1 Tax=Proteus vulgaris RepID=Q8L2... 452 e-125 UniRef50_A4BE15 ATP-dependent helicase, DinG family protein n=1 ... 450 e-125 UniRef50_C0N9A8 Putative uncharacterized protein n=1 Tax=Methylo... 450 e-125 UniRef50_D1Y8P3 DNA polymerase III, epsilon subunit n=1 Tax=Pyra... 449 e-124 UniRef50_Q0A9Y9 Helicase c2 n=2 Tax=Gammaproteobacteria RepID=Q0... 447 e-124 UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA poly... 446 e-123 UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collins... 445 e-123 UniRef50_C5CG21 Helicase c2 n=1 Tax=Kosmotoga olearia TBF 19.5.1... 444 e-123 UniRef50_A5CX48 ATP-dependent DNA helicase DinG n=3 Tax=Gammapro... 441 e-122 UniRef50_C1SGW8 DNA helicase, Rad3 n=1 Tax=Denitrovibrio acetiph... 440 e-122 UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit... 438 e-121 UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Egge... 432 e-119 UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Sla... 428 e-118 UniRef50_C4HUU2 DinG family ATP-dependent helicase YoaA n=2 Tax=... 427 e-118 UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ... 423 e-116 UniRef50_C8RVT0 ATP-dependent helicase DinG (Fragment) n=2 Tax=C... 423 e-116 UniRef50_Q1EM22 ATP-dependent helicase DinG n=1 Tax=uncultured T... 421 e-116 UniRef50_A1WDD4 Helicase c2 n=11 Tax=Comamonadaceae RepID=A1WDD4... 420 e-116 UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atop... 417 e-115 UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D09... 414 e-114 UniRef50_A0LUZ2 Helicase c2 n=1 Tax=Acidothermus cellulolyticus ... 413 e-113 UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit ... 409 e-112 UniRef50_UPI0001C37E7F helicase c2 n=1 Tax=Ruminococcus flavefac... 408 e-112 UniRef50_P27296 Probable ATP-dependent helicase dinG n=174 Tax=E... 404 e-111 UniRef50_C0FSD6 Putative uncharacterized protein n=2 Tax=Rosebur... 399 e-109 UniRef50_A6BD56 Putative uncharacterized protein n=7 Tax=Clostri... 398 e-109 UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax... 398 e-109 UniRef50_A6NXQ7 Putative uncharacterized protein n=2 Tax=Bacteri... 397 e-109 UniRef50_UPI0001C355EC helicase c2 n=1 Tax=Clostridium hathewayi... 396 e-108 UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit ... 395 e-108 UniRef50_A6TUM0 Helicase c2 n=3 Tax=Clostridiales RepID=A6TUM0_A... 395 e-108 UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, pu... 393 e-107 UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus ... 392 e-107 UniRef50_Q67KS2 ATP-dependent helicase n=1 Tax=Symbiobacterium t... 388 e-106 UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit ... 388 e-106 UniRef50_A1WP29 Helicase c2 n=2 Tax=cellular organisms RepID=A1W... 382 e-104 UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_... 382 e-104 UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lact... 381 e-104 UniRef50_B6FUD5 Putative uncharacterized protein n=1 Tax=Clostri... 377 e-103 UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1... 365 2e-99 UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit ... 361 4e-98 UniRef50_P50831 Probable ATP-dependent helicase ypvA n=105 Tax=B... 361 5e-98 UniRef50_Q2LUZ3 ATP-dependent helicase, dinG family n=1 Tax=Synt... 357 6e-97 UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactoba... 356 1e-96 UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=1... 355 2e-96 UniRef50_Q73F47 ATP-dependent helicase, DinG family, putative n=... 349 2e-94 UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus Re... 347 1e-93 UniRef50_B8I7B6 DEAD_2 domain protein n=3 Tax=Clostridium RepID=... 345 3e-93 UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=5... 344 5e-93 UniRef50_A8MJA6 DEAD_2 domain protein n=11 Tax=Clostridia RepID=... 336 1e-90 UniRef50_A6LV05 Exonuclease, RNase T and DNA polymerase III n=6 ... 333 1e-89 UniRef50_C6PPR9 Exonuclease RNase T and DNA polymerase III n=1 T... 333 2e-89 UniRef50_A7VIR7 Putative uncharacterized protein n=3 Tax=Clostri... 326 1e-87 UniRef50_A8REN5 Putative uncharacterized protein n=1 Tax=Eubacte... 326 2e-87 UniRef50_B7AB83 ATP-dependent DNA helicase, RecQ family n=3 Tax=... 325 2e-87 UniRef50_B0G3G8 Putative uncharacterized protein n=16 Tax=Bacter... 323 2e-86 UniRef50_C1D0X6 Putative ATP-dependent DNA helicase n=1 Tax=Dein... 320 9e-86 UniRef50_B5XKK7 DNA polymerase III, epsilon subunit/ATP-dependen... 318 5e-85 UniRef50_C9B220 DEAD_2 helicase n=4 Tax=Enterococcus RepID=C9B22... 314 6e-84 UniRef50_Q8XL45 Probable helicase protein n=7 Tax=Clostridium pe... 313 2e-83 UniRef50_C9XQW7 Putative exonuclease n=9 Tax=Clostridium RepID=C... 313 2e-83 UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus... 311 4e-83 UniRef50_Q58352 Probable ATP-dependent helicase MJ0942 n=10 Tax=... 311 4e-83 UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, pu... 311 5e-83 UniRef50_B0S2X2 ATP dependent helicase n=2 Tax=Finegoldia magna ... 311 6e-83 UniRef50_C0ESD4 Putative uncharacterized protein n=1 Tax=Eubacte... 311 6e-83 UniRef50_C5U5Q1 Helicase domain protein n=1 Tax=Methanocaldococc... 310 1e-82 UniRef50_A4VTT3 Rad3-related DNA helicase n=8 Tax=Streptococcus ... 310 1e-82 UniRef50_B8FYP7 DEAD_2 domain protein n=2 Tax=Desulfitobacterium... 309 2e-82 UniRef50_C0X4L0 DNA-directed DNA polymerase III epsilon subunit ... 307 8e-82 UniRef50_B6IWJ8 DNA helicase, putative n=1 Tax=Rhodospirillum ce... 307 1e-81 UniRef50_C7RHR2 DEAD_2 domain protein n=4 Tax=Anaerococcus RepID... 306 2e-81 UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, e... 306 2e-81 UniRef50_A7GAR7 Putative ATP-dependent helicase n=11 Tax=Clostri... 305 3e-81 UniRef50_Q2NCB3 DNA helicase n=10 Tax=Sphingomonadales RepID=Q2N... 305 4e-81 UniRef50_A6M309 DEAD_2 domain protein n=4 Tax=Clostridium RepID=... 303 2e-80 UniRef50_A8URH3 ATP-dependent helicase (DinG family) protein n=2... 302 3e-80 UniRef50_A0YBF9 Putative uncharacterized protein n=1 Tax=marine ... 300 2e-79 UniRef50_A1AQ39 DEAD_2 domain protein n=7 Tax=Desulfuromonadales... 300 2e-79 UniRef50_C0XBA8 ATP-dependent helicase DinG n=1 Tax=Lactobacillu... 299 2e-79 UniRef50_D1PL53 Putative helicase n=1 Tax=Subdoligranulum variab... 298 3e-79 UniRef50_C6D1G2 DEAD_2 domain protein n=5 Tax=Bacillales RepID=C... 298 3e-79 UniRef50_A7HQ70 Helicase c2 n=7 Tax=Alphaproteobacteria RepID=A7... 295 3e-78 UniRef50_C5SK23 Helicase c2 n=2 Tax=Caulobacteraceae RepID=C5SK2... 295 3e-78 UniRef50_Q2RPW4 Helicase c2 n=6 Tax=Alphaproteobacteria RepID=Q2... 295 5e-78 UniRef50_B9XAU8 DEAD_2 domain protein n=3 Tax=Bacteria RepID=B9X... 295 5e-78 UniRef50_D0BJL1 DnaQ family exonuclease/DinG family helicase n=1... 294 8e-78 UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macroco... 293 1e-77 UniRef50_C8NF23 DnaQ family exonuclease/DinG family helicase n=1... 293 2e-77 UniRef50_C5BQV4 Putative uncharacterized protein n=1 Tax=Teredin... 292 2e-77 UniRef50_C0D1I1 Putative uncharacterized protein n=1 Tax=Clostri... 286 1e-75 UniRef50_A9KRY0 DEAD_2 domain protein n=2 Tax=Clostridiales RepI... 286 2e-75 UniRef50_Q03DH3 Rad3-related DNA helicase n=2 Tax=Pediococcus Re... 283 1e-74 UniRef50_Q1WV23 Superfamily II DNA and RNA helicase n=3 Tax=Lact... 283 1e-74 UniRef50_C7H4L4 Putative helicase n=1 Tax=Faecalibacterium praus... 282 2e-74 UniRef50_D1ABA6 Helicase c2 n=4 Tax=Actinomycetales RepID=D1ABA6... 282 3e-74 UniRef50_A4VLC1 Rad3-related DNA helicase n=91 Tax=cellular orga... 282 3e-74 UniRef50_D1VTJ3 DEAD family protein n=1 Tax=Peptoniphilus lacrim... 282 3e-74 UniRef50_B8HIV9 Helicase c2 n=1 Tax=Arthrobacter chlorophenolicu... 281 4e-74 UniRef50_C5EU12 DEAD_2 domain-containing protein n=7 Tax=Firmicu... 279 2e-73 UniRef50_D2MI55 Helicase c2 n=1 Tax=Candidatus Poribacteria sp. ... 279 3e-73 UniRef50_B3W8P1 Superfamily II DNA and RNA helicase n=11 Tax=Lac... 276 3e-72 UniRef50_Q0BQ29 ATP-dependent helicase, DinG family n=3 Tax=Rhod... 274 5e-72 UniRef50_C6LHG2 Putative helicase n=1 Tax=Bryantella formatexige... 272 3e-71 UniRef50_A8SGA1 Putative uncharacterized protein n=1 Tax=Faecali... 271 6e-71 UniRef50_A6UVN5 Helicase domain protein n=1 Tax=Methanococcus ae... 269 2e-70 UniRef50_UPI0001C41D99 Rad3-related DNA helicase n=1 Tax=Methano... 269 3e-70 UniRef50_Q03PE1 Rad3-related DNA helicase n=4 Tax=Lactobacillus ... 268 4e-70 Sequences not found previously or not previously below threshold: UniRef50_C4GAH1 Putative uncharacterized protein n=1 Tax=Shuttle... 292 2e-77 UniRef50_C4Z491 Putative uncharacterized protein n=1 Tax=Eubacte... 288 6e-76 UniRef50_B8DGR4 Helicase c2 domain protein n=17 Tax=Listeria Rep... 282 3e-74 UniRef50_Q6MR44 Similar to ATP dependent helicase n=1 Tax=Bdello... 272 3e-71 >UniRef50_P44680 Probable ATP-dependent helicase HI0387 n=261 Tax=Gammaproteobacteria RepID=Y387_HAEIN Length = 640 Score = 766 bits (1978), Expect = 0.0, Method: Composition-based stats. Identities = 383/631 (60%), Positives = 474/631 (75%), Gaps = 1/631 (0%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + F+ +G+L++ I GF+PR Q +MA AV +AI+ LV+EAGTGTGKT+AYLAPAL Sbjct: 7 IANIFSLNGELSQNIKGFRPRAEQLEMAYAVGKAIQNKSSLVIEAGTGTGKTFAYLAPAL 66 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 KK IISTGSK LQDQL++RDLP + KAL +TG +ALLKGR+NYLCLERL+Q G Sbjct: 67 VFGKKTIISTGSKNLQDQLFNRDLPAIKKALNFTGKIALLKGRANYLCLERLDQVIAQGV 126 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 +L+++ +R W+N T GD + C+ +AEDS P +TST ++CLG+DCP Y +C+ Sbjct: 127 LGDKSVLAELSKVRKWNNSTKTGDFTECIELAEDSPIIPQLTSTAESCLGTDCPNYSECY 186 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 V ARKKA++AD+VVVNHHLF ADM VKESGFGELIP A+V+IFDEAHQLPDIASQYFGQ Sbjct: 187 VASARKKALNADLVVVNHHLFFADMAVKESGFGELIPNAEVIIFDEAHQLPDIASQYFGQ 246 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPG-YRGNLRELL 299 SL+SRQL DL KDI I YRTELKD QQL +D L + QDFRL LG RGN REL Sbjct: 247 SLTSRQLFDLCKDINIVYRTELKDMQQLGTTSDTLLKVVQDFRLLLGNGSNVRGNWRELY 306 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359 +++AF LL + ++ +V KL+LGRS LD+ FER + +LKRL E N GY Y Sbjct: 307 TQSAVKKAFELLQEKIDFLSEVIKLALGRSQTLDSIFERVESIKIQLKRLSETNIVGYCY 366 Query: 360 WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES 419 WYE R F L +TPL+VADKF + K +WIFTSATL V +HF RLGIE A Sbjct: 367 WYEGNGRQFGLHITPLTVADKFGAQLEAKEAAWIFTSATLEVGGTFNHFCQRLGIENATQ 426 Query: 420 LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 +L SPF+Y Q+LLCV R LP TNQ + L +L P+IEAN GRCF+LCTS++MMR Sbjct: 427 KILYSPFNYPEQSLLCVPRYLPNTNQMNTLNSLGEILLPVIEANKGRCFVLCTSYSMMRG 486 Query: 480 LAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDK 539 LAE FR L +LLQGETSKG+LL+QF+ +++LVATSSFWEGVDVRGD LSLVIIDK Sbjct: 487 LAEYFREKSHLSILLQGETSKGKLLEQFIKETHSVLVATSSFWEGVDVRGDALSLVIIDK 546 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LPFT+PD+PLLKAR+EDCRL+GGDPF+++Q+P+AVITLKQGVGRLIRD DRGV++ICDN Sbjct: 547 LPFTAPDEPLLKARIEDCRLQGGDPFNDIQIPEAVITLKQGVGRLIRDVTDRGVVIICDN 606 Query: 600 RLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 RLVMR YG TFL SLP + RTRD+ + ++FL Sbjct: 607 RLVMRNYGETFLKSLPNSSRTRDLNKVIQFL 637 >UniRef50_C4LDA1 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=C4LDA1_TOLAT Length = 672 Score = 742 bits (1917), Expect = 0.0, Method: Composition-based stats. Identities = 363/634 (57%), Positives = 459/634 (72%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 D FA +G LAKAIPGF PR+ Q MA AV++AIE L+VEAGTGTGKT+AYL PAL Sbjct: 18 NDYFAENGLLAKAIPGFAPRQAQVHMAEAVSKAIETAGRLLVEAGTGTGKTFAYLVPALD 77 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 + K+VIISTGSKALQDQLY RDLPT+ A++Y VA LKGRSNYLC RL Sbjct: 78 SGKRVIISTGSKALQDQLYERDLPTLLLAMQYGKPVAQLKGRSNYLCTYRLALLEQEMHF 137 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 L + +D+ +R + +TV GD++ + E + P VTSTNDNCLG +CP Y++CF+ Sbjct: 138 LAADVFADLPKVRQFKARTVSGDVADIPGLQEQAPILPFVTSTNDNCLGRECPDYENCFL 197 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS 241 VKAR+KA+DA VVV+NHHLF ADM VK++GFGEL+P+ADV IFDEAHQLPDIASQYFG+S Sbjct: 198 VKARRKALDAQVVVINHHLFFADMSVKDTGFGELLPDADVYIFDEAHQLPDIASQYFGES 257 Query: 242 LSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLAN 301 LSSRQL D+A ++ +AYR E KD QL K ADRL Q Q RL G RGNLR++L Sbjct: 258 LSSRQLSDVADELRLAYRLEAKDMAQLGKAADRLVQDCQAMRLAFGVDPSRGNLRDVLVQ 317 Query: 302 PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 PQ+QR L ++++ CYDV KL+LGR ++ FER + T + + I + G +YWY Sbjct: 318 PQMQRELQRLKESIKFCYDVCKLALGRGEQINNCFERLAGFLTTVDHVTAITEAGAAYWY 377 Query: 362 ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL 421 E T RHFTL +TPLS+A++F + + + SWIFTSATL+V ++ +F+ R+G+ A++ L Sbjct: 378 ETTKRHFTLNVTPLSIAERFAQEVMRVGCSWIFTSATLTVGEEFDYFSQRMGVGDADTCL 437 Query: 422 LPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 L SPFDY+ Q+LLCV RNLP T+ A QLA L P+IE G CF LCTS+ + +A Sbjct: 438 LDSPFDYAHQSLLCVPRNLPDTSIYQRATQLAERLLPVIEQVPGGCFFLCTSYNSVNQIA 497 Query: 482 EQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLP 541 + R + VL+QG+ +K ++L FV+ G+A+LVATSSFWEGVDVRG LS VIIDKLP Sbjct: 498 QVLRDKLDRTVLVQGDDNKQRILADFVADGHAVLVATSSFWEGVDVRGAALSCVIIDKLP 557 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 FTSPD+PLLKARMEDCR++GGDPF ++QLP+AVI LKQGVGRLIRD DRG+L++CD RL Sbjct: 558 FTSPDEPLLKARMEDCRMQGGDPFQQLQLPEAVIVLKQGVGRLIRDYQDRGILILCDPRL 617 Query: 602 VMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 V +PYGA FL SLPP PR RDI R F +P S Sbjct: 618 VNKPYGAAFLKSLPPIPRCRDITRLTEFWKLPVS 651 >UniRef50_A1SX28 ATP-dependent helicase, DinG family protein n=8 Tax=Gammaproteobacteria RepID=A1SX28_PSYIN Length = 662 Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 353/637 (55%), Positives = 449/637 (70%), Gaps = 5/637 (0%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 ++ F+ G L+K +P F R+ Q +MA AVTQAI K Q LVVEA TGTGKT+AYLAPAL Sbjct: 24 ISSFFSASGALSKQLPFFISRDAQIEMADAVTQAITKKQNLVVEAETGTGKTFAYLAPAL 83 Query: 61 -----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQ 115 + +K+IISTGSKALQ+QL+ +DLP + A +TG+V +LKGRSNYLC ERL + Sbjct: 84 LTFDKASSEKIIISTGSKALQEQLFLKDLPLLMAATNFTGSVTVLKGRSNYLCNERLARF 143 Query: 116 ALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 L + ++I +++WS + GD++ +AED+ P +TS NDNCLG +CP Sbjct: 144 MLETKQREKALQIELIKIKNWSLTSKTGDLAEIKDLAEDALIIPSITSNNDNCLGRECPS 203 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIAS 235 + DCF+VKARKKAMD+D+VV+NHHLF AD+ VKE+GFGELIPEA V IFDEAHQLPDIAS Sbjct: 204 FDDCFIVKARKKAMDSDLVVINHHLFFADLAVKETGFGELIPEAGVYIFDEAHQLPDIAS 263 Query: 236 QYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNL 295 YFG+SLSSRQL++LAK+I YRTEL++ +Q+ K AD+L SA DFR+ G+ Sbjct: 264 LYFGESLSSRQLIELAKEIEFVYRTELREAKQMSKAADQLRLSALDFRMAFAIDKGTGSW 323 Query: 296 RELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQP 355 R+ +Q + ++ +V LG+S +LD FER T + K+L +N+ Sbjct: 324 RDKSKERVMQLHVDRILQVMDFLKEVILERLGKSDVLDHCFERLTQFTLLFKKLNSVNES 383 Query: 356 GYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE 415 G+SYW+ECT +HF+L +TPLSVA +F+ +K SWIFTSATLSV HFT LG++ Sbjct: 384 GFSYWFECTKQHFSLNITPLSVAQRFQAECEKKQASWIFTSATLSVKGKFDHFTELLGLQ 443 Query: 416 QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 +++ L L SPFDY++Q+L V R LP+ PG A +L L P+I A+ GRCF LCTSHA Sbjct: 444 ESQCLQLASPFDYAKQSLFVVPRLLPEPGTPGLADKLVEQLAPVIRASKGRCFFLCTSHA 503 Query: 476 MMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 MM LA FR T+T PVLLQGE SK LL +F++ GNALLVATSSFWEGVDVRG LS V Sbjct: 504 MMNQLAAGFRQTLTFPVLLQGEKSKQALLDEFINHGNALLVATSSFWEGVDVRGQVLSCV 563 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 IIDK+PFTSP++PLLKARMED +L+G DPF EVQLP AVIT KQGVGRLIR D+GVL+ Sbjct: 564 IIDKIPFTSPEEPLLKARMEDAQLKGKDPFAEVQLPQAVITFKQGVGRLIRAEKDKGVLI 623 Query: 596 ICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAI 632 +CD RLV R YG FL SLP PRTR + A+ FL Sbjct: 624 VCDTRLVTRKYGNLFLNSLPCMPRTRSLDNAIDFLKT 660 >UniRef50_B5JSI7 Helicase c2 n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSI7_9GAMM Length = 631 Score = 705 bits (1820), Expect = 0.0, Method: Composition-based stats. Identities = 291/630 (46%), Positives = 400/630 (63%), Gaps = 3/630 (0%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 +D +G LAK I G+ PR+ Q+QMA AV +AIE LVVEAGTG GKTYAYL PA+ Sbjct: 4 SDLLGAEGPLAKVIEGYAPRDAQQQMAEAVEKAIEDIDVLVVEAGTGVGKTYAYLIPAIL 63 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 + +KVIISTG++ LQDQLY RDLP + K L ALLKGRSNYLCL R+ + D Sbjct: 64 SGQKVIISTGTRTLQDQLYHRDLPMLLKTLGVPLKRALLKGRSNYLCLHRMGIADVHHRD 123 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 + + ++ WS +T+ GD++ + E++ P VTST DNCLG DC Y DC V Sbjct: 124 R--EQSEQLAEIKRWSRETIHGDMAEVTLLPENAPILPKVTSTADNCLGVDCEFYNDCHV 181 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS 241 VKAR++A +AD+VVVNHHLF+ADM +K+ GFGE++P A+ IFDEAHQLP++AS +FGQ+ Sbjct: 182 VKARREAQEADLVVVNHHLFMADMALKQDGFGEVLPTANAFIFDEAHQLPEVASLFFGQA 241 Query: 242 LSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLAN 301 + SRQLL+ KDI Y TE+ + L + RL S +DFRL LG R + LL+ Sbjct: 242 VGSRQLLEFVKDIRAVYHTEISEADSLIDLSSRLEMSVRDFRLSLGAKEQRQAWQPLLSQ 301 Query: 302 PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 ++ F L + + ++ +R T + RL + Y YW Sbjct: 302 ADVRHRFADLAAAMSTLRAELVEWEEQGPGVENLLKRCTEFEQRLTLFDHL-DEDYIYWL 360 Query: 362 ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL 421 E T F L +TPLSVA F+ M++ SW+FTSATL+V + HHFT LG+ + +L Sbjct: 361 ETTRLGFVLNMTPLSVAKTFRAHMSRYEASWVFTSATLAVGEQFHHFTQSLGLWEPRTLR 420 Query: 422 LPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 L SPFDY+ +++C+ NLP+ + + +PI++A+ GR FML TS+ + A Sbjct: 421 LESPFDYANNSIICLPENLPEPSAFHFTDAVVDAAKPILQASRGRAFMLFTSYRALNHAA 480 Query: 482 EQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLP 541 E+ ++ + P+ +QGE + QLL F +G+ +L+ TSSFWEGVD++G+ LS VIIDKLP Sbjct: 481 ERLKSEVAFPLFVQGEAPRTQLLDDFRESGDGVLLGTSSFWEGVDIKGEALSCVIIDKLP 540 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 F +P+DP+L+ARM+ + +G +PF + QLP+AVI LKQGVGRLIRD DRGV+VICD RL Sbjct: 541 FAAPNDPVLQARMDAMKEQGQNPFMDYQLPNAVIALKQGVGRLIRDVHDRGVVVICDVRL 600 Query: 602 VMRPYGATFLASLPPAPRTRDIARAVRFLA 631 + YG F SLPP RTR ++ +F A Sbjct: 601 KTKFYGKRFTNSLPPMKRTRKLSDIQQFFA 630 >UniRef50_C5V4E9 Helicase c2 n=3 Tax=Betaproteobacteria RepID=C5V4E9_9PROT Length = 648 Score = 695 bits (1793), Expect = 0.0, Method: Composition-based stats. Identities = 286/640 (44%), Positives = 382/640 (59%), Gaps = 6/640 (0%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + F+ LA + F+PRE QR+MA+AV AI+ LV EAGTGTGKT+AYL PAL Sbjct: 5 VARFFSEQSPLATEVSSFRPREQQREMALAVADAIKNNAILVAEAGTGTGKTFAYLVPAL 64 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 KVIISTG+K LQDQL+ +DLP V ALK ++ALLKGR+NY+C LE+ A G Sbjct: 65 LGGGKVIISTGTKNLQDQLFQKDLPMVRDALKAPVSIALLKGRANYICHYHLERTAHDGR 124 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + + + ++ ++ T GD S V E++ W VTST DNCLG +CP +K+CF Sbjct: 125 FATREDIKHLGKIKKYAKITSTGDKSGVADVPENAPIWLQVTSTRDNCLGQECPNHKECF 184 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 V+ AR +AM AD+VVVNHHLF AD+++K+ G EL+P + +IFDEAHQLP+ AS +FG+ Sbjct: 185 VLHARTEAMKADIVVVNHHLFFADVMLKDDGVAELLPACNTVIFDEAHQLPETASLFFGE 244 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 +LS+ QLLDLA+D I T KD L K D L ++A+D RL + G R + Sbjct: 245 NLSTTQLLDLAQDSRIEALTSAKDFAPLPKACDELDKAARDLRLVFKKEG-RMPAIATGS 303 Query: 301 NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 L + L+ D+ + RS L+ ++RA + LK ++ W Sbjct: 304 FKDFAPQLKNLSEKLKQINDMLESQAARSEGLENCWQRAQAFSLLLKNWQDDKADDKVRW 363 Query: 361 YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL 420 E L TPLS+A+ F++ + +WIFTSATL+V D H+ +G+ +A++ Sbjct: 364 LEVYHHSLQLNATPLSIAEIFEKQIGSTARAWIFTSATLAVKQDFSHYQGEMGLLKAKTA 423 Query: 421 LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL 480 SPFDY +QALL V LP+ N G + P+IEA+ GR F+L TS M+ Sbjct: 424 CWDSPFDYEKQALLYVPSGLPEPNSEGYTEAVIQAALPMIEASRGRAFLLFTSLRAMQRA 483 Query: 481 AEQFRATMT-----LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 E A P+LLQGE S+ +LL +F GNA+L+ + SFWEGVDVRG+ LSLV Sbjct: 484 HEILTAEFDLRGWSYPLLLQGEGSRNELLGRFREHGNAVLLGSQSFWEGVDVRGEALSLV 543 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 IIDKLPF PDDP+L AR+ +G + F E QLP +ITLKQG GRLIRD +DRGVL+ Sbjct: 544 IIDKLPFAPPDDPVLAARIAQISKQGRNAFMEYQLPRTIITLKQGAGRLIRDENDRGVLM 603 Query: 596 ICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 ICD RL+ + YG SLPP RTR AV F S Sbjct: 604 ICDPRLITKQYGKRIWQSLPPMKRTRVETEAVAFFTAQSE 643 >UniRef50_Q0VQH3 Probable ATP-dependent helicase n=2 Tax=Alcanivorax RepID=Q0VQH3_ALCBS Length = 668 Score = 683 bits (1763), Expect = 0.0, Method: Composition-based stats. Identities = 276/622 (44%), Positives = 368/622 (59%), Gaps = 1/622 (0%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIIS 69 + A +PG++PREPQ +MA AV I G L+VEA TGTGKT AYL PAL ++ ++S Sbjct: 32 RFAPLLPGYQPREPQLEMADAVEDVIGSGATLLVEAETGTGKTLAYLVPALLSEGPTLVS 91 Query: 70 TGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSD 129 TG+K+LQDQL+ +DLP V KAL VALLKGR+NYLC RLE L + + Sbjct: 92 TGTKSLQDQLFFKDLPMVKKALNLPRKVALLKGRANYLCPYRLELHQEDARFLTRETVGQ 151 Query: 130 VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAM 189 + ++ W+ +T GDI+ + ED+ WP VTST DNCLG++CP Y +C ++KARK+A Sbjct: 152 MQIVSHWAARTRTGDIAELQQIPEDAPVWPWVTSTADNCLGTECPRYNECPLMKARKEAQ 211 Query: 190 DADVVVVNHHLFLADMVVKESGFG-ELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL 248 +AD+VVVNHHLF AD ++ +G EL+P A+ +IFDEAHQLP+IA+ +F +LS+RQ+ Sbjct: 212 EADLVVVNHHLFFADAALRGNGAASELLPTANTVIFDEAHQLPEIAAAFFADTLSTRQIQ 271 Query: 249 DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF 308 +L +D D +L + + +S+ D RL LG+ R E+ N + A Sbjct: 272 ELGRDSLSEAGHTAADLAELNRLVAAVDKSSMDLRLSLGDGERREPWTEVAENKAVIEAG 331 Query: 309 LLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF 368 L L+ S +DA RA+ L + QP YW+E R Sbjct: 332 EALLQALQELDAFLGPLAKASRGMDACSRRASEQVDCLAAYLKGGQPNRVYWFETFKRSV 391 Query: 369 TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDY 428 L TPLSVA + + + P SWI TSATLSV H RLG++ A +L L SPFD+ Sbjct: 392 VLHSTPLSVAAQLRAQRERNPCSWILTSATLSVGGRFEHIQHRLGLDSARTLRLESPFDF 451 Query: 429 SRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 RQA+ LP N QL A + P+I A GR F L TSH +R+ A R + Sbjct: 452 KRQAVFYAPEGLPAPNDSEYTAQLTAAMVPVINAARGRTFFLFTSHRALREAAAILRQKL 511 Query: 489 TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDP 548 P+L+QGE + +LL F GNA+L+ TSSFWEG+DVRG+ LS VIIDKLPF SP DP Sbjct: 512 DYPLLVQGEAGRRELLDAFREKGNAVLLGTSSFWEGIDVRGEALSCVIIDKLPFGSPGDP 571 Query: 549 LLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGA 608 + AR+E GG+ F + QLP AV+ L+QG GRLIRD D G+LV+ D RL+ R YG Sbjct: 572 VAAARIEHINRNGGNAFRDYQLPQAVLALRQGAGRLIRDPKDTGLLVVADPRLLTRSYGK 631 Query: 609 TFLASLPPAPRTRDIARAVRFL 630 F+ SLP RTR + RF Sbjct: 632 LFVNSLPNMTRTRKLDVVQRFF 653 >UniRef50_B8GRE0 Helicase c2 n=6 Tax=Chromatiales RepID=B8GRE0_THISH Length = 651 Score = 678 bits (1749), Expect = 0.0, Method: Composition-based stats. Identities = 302/638 (47%), Positives = 393/638 (61%), Gaps = 7/638 (1%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 ++ PDG LA+ + F+PR Q+QMA AV +A+E Q LVVEAGTG GKT+ YL P L Sbjct: 6 SEVLGPDGPLAETLTNFRPRAAQQQMAAAVERALEARQALVVEAGTGVGKTFGYLVPVLM 65 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKAL-----KYTGNVALLKGRSNYLCLERLEQQA 116 ++ I+STG+K LQDQL+ +DLP V AL VALLKGRSNYLC RL+ A Sbjct: 66 DGRRTILSTGTKNLQDQLFQKDLPFVRDALVGAGLGRVPRVALLKGRSNYLCRHRLD-LA 124 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 G L ++ + W ++T GDI + EDS WP VTST DNCLG DCP Y Sbjct: 125 REDGRLGAAQTDQLLRVVRWVSRTTRGDIGELSGIPEDSPLWPQVTSTPDNCLGQDCPEY 184 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 +DCFVV+AR++A +AD+VV+NHHL +AD+ +KE GFGE++P AD + DEAHQLPD+AS Sbjct: 185 EDCFVVRARREAQEADLVVINHHLLMADLTLKEEGFGEILPSADAFVLDEAHQLPDVASA 244 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLR 296 +FG+S+ SRQLLDLA+D E D L+ AD L+ + R +LG R Sbjct: 245 FFGRSVGSRQLLDLARDAVAEQLREASDMGDLRDAADALSMAVAALRSELGATSGRSPWT 304 Query: 297 ELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPG 356 + +I A L LE + R L+ RA R RL + +P Sbjct: 305 RHEQDARITGAMDSLVARLETLVMWLDTAADRGKGLEQCARRANTLRARLLAFMKP-EPD 363 Query: 357 YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ 416 W E +R F L TPL+VA++F E M P +WIF SATLSV HFT RLG+EQ Sbjct: 364 TVRWVETFTRAFALHATPLNVAERFGERMRAYPSAWIFASATLSVGGRFEHFTGRLGLEQ 423 Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 AE+L+L SPFDYSR A L + N+PQ N P + P+IEAN G FML TSH Sbjct: 424 AETLMLDSPFDYSRNARLYLPANMPQPNAPNHTAAVVEAALPVIEANPGGTFMLFTSHRA 483 Query: 477 MRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 +R+ A+ + +L+QG + +LL +F +AG+A+L+ SFWEGVDVRG LS VI Sbjct: 484 LREAAQLLEGRLERELLVQGTAPRDELLARFRAAGDAVLLGAHSFWEGVDVRGRALSCVI 543 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 IDKLPF +PDDPLL+AR++ R GG+PF + QLP AV++LKQGVGRLIRD DRGVL++ Sbjct: 544 IDKLPFAAPDDPLLEARLQAIRDAGGNPFMDYQLPQAVLSLKQGVGRLIRDVTDRGVLML 603 Query: 597 CDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPS 634 CD R+ + YG F++SLPP PR ++A FL Sbjct: 604 CDPRIRTKAYGRLFISSLPPIPRLDNLAEVASFLMTEE 641 >UniRef50_C7RB18 Helicase c2 n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RB18_KANKD Length = 653 Score = 675 bits (1741), Expect = 0.0, Method: Composition-based stats. Identities = 283/642 (44%), Positives = 398/642 (61%), Gaps = 13/642 (2%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + F+ DG LA GF R Q QMA ++ AI++ + +EAGTGTGKT+AYL PAL Sbjct: 7 LEELFSADGLLADYFEGFVRRSEQEQMAQSIESAIKEEASICIEAGTGTGKTFAYLVPAL 66 Query: 61 RA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 ++ K+I+STG+K LQDQLY RDLP + KAL + +ALLKGR+NYLC RL+Q Sbjct: 67 KSWYEQDSKIIVSTGTKNLQDQLYFRDLPDICKALSISPKIALLKGRNNYLCQYRLQQSL 126 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 +G ++ + + WS +T GD++ C +A++ W VTSTN+NCLG++CP Y Sbjct: 127 ESGRFQSRSMVDTLSRVNEWSVKTTSGDLTQCTDLADNDPLWSYVTSTNENCLGAECPDY 186 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 +CFV KAR++A+ ADVVVVNHHL LADMV+KE GFGEL+P+AD+++ DE HQL DIA Sbjct: 187 AECFVAKARQRAVTADVVVVNHHLLLADMVLKEDGFGELLPDADIVVVDEGHQLADIAHS 246 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLR 296 ++G+ L+SRQL+++ +D + T KD +QL R+ + + RL LGE G + N + Sbjct: 247 FYGRRLTSRQLMEICRDTELEALTNAKDDRQLSVAVRRVEGAVNEIRLSLGESGQKKNWQ 306 Query: 297 ELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQP- 355 +++ NPQ ++ L L + + RS LD+ +RA L + +Q Sbjct: 307 QIV-NPQRKQLLAELKKELGALHSRLERHASRSKGLDSCHKRAEECLHTLAFFSDKDQEL 365 Query: 356 GYSYWYECTSRHFTLALTPLSVADKFKE-LMAQKPGSWIFTSATLSVNDD-----LHHFT 409 W E + F + TPL V+ F + Q SW+FTSAT++ HF Sbjct: 366 TAVRWVETYRQGFAMMETPLDVSKAFAQSCREQSTRSWVFTSATITQASSKGTSDFKHFK 425 Query: 410 SRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFM 469 RLG+++A L LPSPFDY+ QA+L + R L + PI+EAN G F+ Sbjct: 426 ERLGLDEARELELPSPFDYASQAILHIPRGLADPRSKDFINNWQQAVLPIVEANPGGTFV 485 Query: 470 LCTSHAMMRDLAEQFRAT-MTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 L TS++ M + E ++ + VL+QGE K QL++ F GNA+L+ATSSFWEGVDV+ Sbjct: 486 LFTSYSAMHQVQELWKDKLLDKTVLMQGEKPKNQLIEDFREEGNAVLLATSSFWEGVDVK 545 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 G LS VIIDKLPF +PD+PL++A+++ R G +PF ++Q+P+A+I LKQG GRLIRD Sbjct: 546 GLALSCVIIDKLPFAAPDEPLIEAKIQAMRKSGKNPFFDLQIPEAIIALKQGAGRLIRDQ 605 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 DRGVLV+CD RL+ YG FL SLPP RTR+ + FL Sbjct: 606 KDRGVLVLCDPRLIANAYGKRFLRSLPPMRRTREQKTVIEFL 647 >UniRef50_C0N252 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N252_9GAMM Length = 639 Score = 667 bits (1722), Expect = 0.0, Method: Composition-based stats. Identities = 256/637 (40%), Positives = 378/637 (59%), Gaps = 5/637 (0%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + FA G L+ + G+ R Q +MA V++A+ + L+ EAGTGTGKT+AYLAPA+ Sbjct: 5 IEQLFAEGGLLSNHVEGYSARTQQIEMAEKVSEALANNEVLIAEAGTGTGKTFAYLAPAM 64 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + +KV ISTG+K LQDQL+ +DLP + + L ALLKGRSNYLC RL Sbjct: 65 LSGQKVFISTGTKNLQDQLFKKDLPKLREVLSVPLKAALLKGRSNYLCHHRLALAESEPS 124 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + Q + LR W +T GD+S + E S WP VTST DNCLG CP Y DCF Sbjct: 125 AVYQQHT--LQTLREWMGKTSSGDLSETDLLEEQSPLWPKVTSTIDNCLGQQCPDYDDCF 182 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 +V+AR+KA +AD+V++NHHL ++DM +K SG GE++P+AD I DEAHQLP IASQ+ G Sbjct: 183 IVEARRKAQEADIVIINHHLLMSDMALKASGQGEVLPDADAFIIDEAHQLPAIASQFLGH 242 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 +SS Q+ +L++D + D + +++ A+++ F+L LG+ R +++ Sbjct: 243 RVSSHQIQELSRDSIREMELDATDMEDIRQSAEKIDNRLHQFKLTLGDKEQRLPWYQVVQ 302 Query: 301 NPQIQ-RAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEIN-QPGYS 358 A L +E + + R L+ ++R +L + Sbjct: 303 QQTTTQDALDSLIMAIEKLEQSLEPASERGRGLEQCYQRCQEIIKKLNVFSDNETDDNLI 362 Query: 359 YWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE 418 W + F L TP ++ F++ +A KP +W+FTSATL+V ++F +LGI+ Sbjct: 363 LWLDVRGASFILHATPQEISQHFQQWIADKPSAWVFTSATLTVAGKFNNFIQQLGIDDPV 422 Query: 419 SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 + SPFDY+ Q+LL + + + +A + + +IE + GR F+L TS+ + Sbjct: 423 TKSWQSPFDYASQSLLYMPSIPVEPSNNSYNSHIANIAKAVIEYSQGRIFLLFTSYRALH 482 Query: 479 DLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIID 538 ++A+ + M P+L+QG +K QLL +F GNA+L+ T+SFWEGVDVRG+ LS V+ID Sbjct: 483 EVADALQD-MEYPILVQGAGAKSQLLAEFREHGNAVLLGTNSFWEGVDVRGEALSCVLID 541 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 K+PF SP DP+L+AR+ R RGG+PF +Q+P AVI LKQG+GRLIRD D GVLV+CD Sbjct: 542 KIPFASPGDPVLEARINHLRERGGNPFRSIQIPSAVIQLKQGIGRLIRDKRDYGVLVLCD 601 Query: 599 NRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 R + +PYG F+ SLPP P T+ + F ++ ++ Sbjct: 602 PRFLSKPYGKIFMRSLPPMPITQQLDDVAEFFSLKAT 638 >UniRef50_UPI0000E87EB6 Helicase c2:DEAD/DEAH box helicase, N-terminal n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87EB6 Length = 643 Score = 665 bits (1717), Expect = 0.0, Method: Composition-based stats. Identities = 260/635 (40%), Positives = 376/635 (59%), Gaps = 5/635 (0%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 +T+ F +G L++ I G++ R Q +M+ V AI+ +PLVVEAGTG GKT+AYLAPAL Sbjct: 6 ITEFFDVNGPLSEVIEGYQIRPSQVEMSQMVDAAIKNQEPLVVEAGTGIGKTFAYLAPAL 65 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 A KVIIST +K LQDQL+++D+P + +ALK V LLKGR+NY+C RL+ G Sbjct: 66 AAGGKVIISTATKNLQDQLFNKDIPKIREALKIPIKVNLLKGRANYVCQLRLDDSIQGGQ 125 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + + + + ++ +S+ + G+IS +V E S WP+VTST DNCLG C K CF Sbjct: 126 FVNKEDGAYLEKIKQFSDHSNSGEISEVENVPEFSTIWPMVTSTADNCLGQGCEFAKSCF 185 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 ++KARK+A++A+VV+VNHHLF AD ++K+ E++P+AD +IFDEAHQ+PDIAS +FG Sbjct: 186 LLKARKEALNAEVVIVNHHLFFADFMLKDEDISEILPKADTVIFDEAHQVPDIASIFFGN 245 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 + S+ +L+ L +D + Y K+ ++L A + + + RL+ G R ++ Sbjct: 246 NFSTNELIYLMQDAQLLYDKLGKNQKKLIDIASGVQEEIKHLRLEFGSSSERVTFEKITN 305 Query: 301 NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 + + + E + L +S ER +L + Y YW Sbjct: 306 IDKFTEKLQSIHSSFEQLGKIFSLLDDQSPEQKKIMERYEGILEKLSHWLKEKNDQYVYW 365 Query: 361 YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL 420 + S+ +TP S+A+ F Q SWIFTSATL+VND F + +G+ A S Sbjct: 366 LDIFSKSIQFNMTPFSIAEGFGRFRKQNKISWIFTSATLAVNDSFDFFQNLMGLSDATSK 425 Query: 421 LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL 480 L SPFD+ A L V N+P N + P+I+A GR F+L TS MR++ Sbjct: 426 KLNSPFDFKNNACLYVPNNMPDPNSSIFNLTIIKKTYPLIQAAKGRTFILSTSLKSMREI 485 Query: 481 AEQFRAT-----MTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 + ++ + P+L QGE SK L+++F S GNA+L+ + SFWEG+DVRG +LSLV Sbjct: 486 SALLKSEFEEHDINFPILTQGEDSKRTLIERFKSYGNAVLIGSMSFWEGIDVRGPSLSLV 545 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 IIDKLPF SP DP+ ++R+ + G +PF QLP A+I+LKQG GRLIRD D+GVL+ Sbjct: 546 IIDKLPFHSPGDPVFESRINRLKALGENPFMSFQLPQAIISLKQGAGRLIRDEIDKGVLM 605 Query: 596 ICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 ICD R++ +PYG SLP RTR+ FL Sbjct: 606 ICDPRIIDKPYGKRIWKSLPDFKRTRNELDVTDFL 640 >UniRef50_A6GN94 Helicase c2 n=1 Tax=Limnobacter sp. MED105 RepID=A6GN94_9BURK Length = 654 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 273/647 (42%), Positives = 384/647 (59%), Gaps = 11/647 (1%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + FAP G LA+ +PGF RE Q +MA AV AIE LVVEAGTGTGKT+AY+ PAL Sbjct: 8 LNEAFAPGGALARRLPGFSARESQIEMAQAVGNAIETQSALVVEAGTGTGKTFAYVVPAL 67 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + ++V++ST +K LQDQL+++DLP V +AL NVALLKGR NY+C LE+ Sbjct: 68 LSGRRVLLSTATKTLQDQLFNKDLPLVREALGVPVNVALLKGRQNYVCHFHLERALKEAR 127 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + + + ++ ++ +T GD + C V EDS W VTS DNCLG +CP +CF Sbjct: 128 LPSPREVDHLQKVKIFAGRTQSGDRADCAGVPEDSAVWSWVTSNKDNCLGGECPNASECF 187 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 V KAR+ A+DA+VVVVNHHLFLAD+ +KE G EL+P DV++FDEAHQLPDIA+ GQ Sbjct: 188 VNKARRDALDAEVVVVNHHLFLADLALKEEGIAELLPACDVIVFDEAHQLPDIATSLLGQ 247 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEP--GYRGNLREL 298 ++S+ Q + +D+ I RT D + + ++ R +G R + Sbjct: 248 AISTAQCQEFLRDVLIEGRTSSADAGDWDSVLRPMELALKEIRRIVGTEIDSARFTHAQF 307 Query: 299 LANPQIQRAFLLLDDTLELCYDVAKLSLGRSA----LLDAAFERATLYRTRLKRLKEINQ 354 LA + ++ LE ++ R+ L+ A E ++ Sbjct: 308 LALNGVAAVCADFENRLEGLIEMISPLSVRNESWVKLMGRASELCLRWQDWFSPATAQAD 367 Query: 355 PGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 W ++ +PL V++ F +L A++P +W+FTSATLS+ + L HFT ++G+ Sbjct: 368 EQSVRWVSVSTHVVQFCDSPLDVSNAFAKLYAEQPKAWVFTSATLSIKESLQHFTLQVGL 427 Query: 415 EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSH 474 ++ + LLLPSPFDY QALLCV NLP N+P +++L + P++ A+ G F LCTSH Sbjct: 428 DECQQLLLPSPFDYESQALLCVPDNLPFPNEPQFSKKLCDAVWPLLHASEGGVFFLCTSH 487 Query: 475 AMMRDLAEQFRAT-----MTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRG 529 ++ + E R + +L+QGE S+ +LL QF N +LV +SFWEGVD+RG Sbjct: 488 RAVKQVGEYLRERIEKDELDWSLLVQGEASRAELLDQFRVLNNPVLVGAASFWEGVDIRG 547 Query: 530 DTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDAD 589 D L LVIIDKLPF PDDP+ +A+ E + RGG+ F ++ LPDA I LKQG GRLIRD Sbjct: 548 DGLRLVIIDKLPFAPPDDPVFQAKSELIKNRGGNAFQDLSLPDAAIALKQGAGRLIRDET 607 Query: 590 DRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR 636 D GVL+I D RLV + YG SLPP RTR++ A+ F+ + Sbjct: 608 DWGVLLIGDRRLVEKGYGKLLWRSLPPFKRTRELKVAIEFMRDKRQK 654 >UniRef50_D0KYH8 Helicase c2 n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYH8_HALNC Length = 668 Score = 658 bits (1697), Expect = 0.0, Method: Composition-based stats. Identities = 271/633 (42%), Positives = 380/633 (60%), Gaps = 3/633 (0%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + D F G LA A G++PR Q QMA + AI + +V+EAGTG GKT+ YLAP L Sbjct: 21 LQDVFGESGVLAAAFSGYQPRAGQLQMAEIIRDAITDSRTVVIEAGTGVGKTFGYLAPIL 80 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 A +K I+STG+K LQDQ++SRDLP + + + T ALLKGRSNYLCL RLE+ G Sbjct: 81 LAGRKAIVSTGTKHLQDQIFSRDLPQIKQLMGSTTRTALLKGRSNYLCLHRLERAMTEGR 140 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 ++ + ++ WS +T DGDI+ C +V+E+ WPLVTSTN+NCLG +CP++ +CF Sbjct: 141 LKSPDWVTALHTIKGWSTRTRDGDIARCDAVSEEHGIWPLVTSTNENCLGKECPVFDECF 200 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 VVKAR+ A +AD+VV+NHHLF AD+ +++SGF +L+PEADV++ DEAHQLP+IAS +FG Sbjct: 201 VVKAREAAHEADLVVINHHLFCADIAIRQSGFAQLLPEADVVVLDEAHQLPEIASLFFGS 260 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEP-GYRGNLRELL 299 +LSS Q++DL +DI + E D L + + L L R +EL Sbjct: 261 ALSSGQMIDLLRDIVREQQAEAVDMSDLLGVVHQFELAIDPCVLALKNARTDRIAWQELR 320 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ-PGYS 358 + IQ AF L+ L +L+ R L + ERA R L + + Sbjct: 321 EDKTIQAAFDTLETRLADLTAALELAAPRGKGLASCHERAIQMRQSLSHFRRSEEITTEV 380 Query: 359 YWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE 418 W E + FTL +TP+ F +++ +P +W+F SATL+ D HFT RL + A Sbjct: 381 RWLERREKSFTLNITPMDAGQTFSDVVESQPRAWVFASATLAAGKDFSHFTRRLNLNLAL 440 Query: 419 SLLLPSPFDYSRQALLCVLRNLPQT-NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 PSPFDY QA++ + N P P ++ + P+++A+ GR F+L TSH + Sbjct: 441 CQQTPSPFDYPNQAIMYLPPNPPDPKTDPDYTLKILRAVFPVLKASGGRAFLLFTSHREL 500 Query: 478 RDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 + A+ + P+ +QG +K LL+QF +GN +L+ T SFWEGVDVRG+ LS+V+I Sbjct: 501 KKAADILEGKLPFPLFVQGTQAKAALLEQFRQSGNGVLLGTQSFWEGVDVRGEALSVVMI 560 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 D++PF SPDDP+ +AR + G PF + LP+A+IT KQGVGRLIRD DRGVLV+C Sbjct: 561 DRIPFASPDDPVRRAREAQIKESGHSPFAAMALPEAIITFKQGVGRLIRDVTDRGVLVLC 620 Query: 598 DNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 D RL +G L +LPP R+ I F Sbjct: 621 DPRLQRTGFGRQILDALPPMRRSHSIDEIHDFF 653 >UniRef50_A0L5B4 Helicase c2 n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L5B4_MAGSM Length = 660 Score = 655 bits (1691), Expect = 0.0, Method: Composition-based stats. Identities = 236/632 (37%), Positives = 350/632 (55%), Gaps = 5/632 (0%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 F P LA+ + ++PR Q +MA V +A + L+VEAGTGTGKT AY+ P L K Sbjct: 15 FGPQSALAQCLESYEPRAAQVRMAELVARAAHQQDLLIVEAGTGTGKTLAYMLPLLAMGK 74 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 KV++ST +KALQDQ+ +DLP + + + + LLKGR+NYLCL RL Q L Sbjct: 75 KVVVSTATKALQDQILEKDLPLLRQVVGSRFSATLLKGRANYLCLHRLTQMRANRSLLRH 134 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + + + + WS+ TV GD + E WP +++ D+CLG +CP + C++ KA Sbjct: 135 EARAWLEAIEQWSSTTVQGDRDELKELPERLDIWPELSTNGDDCLGQECPDLQACYLFKA 194 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 R +A +A +VVVNHHLF AD+ V+E GFGE++PE V++FDEAHQ+PD+ +++FG +S+ Sbjct: 195 RARAKEAQLVVVNHHLFFADLAVREGGFGEILPEYQVVVFDEAHQIPDVVTRFFGLEVSN 254 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQI 304 Q+L+LA+D D L + + A R R L + Sbjct: 255 FQMLELARDCRREMDMVGMDDLDLLHHLTVIEERAALLRSAFPVENVRDALAPHHLQEEP 314 Query: 305 QRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECT 364 RA ++ + L ++ + L RSA + + R ++ ++ P YWYE Sbjct: 315 GRALVMAEQALHKLAELLEPHLERSAGMASCGRRLEKLLIASGSIRTLDDPARVYWYETR 374 Query: 365 SRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVN---DDLHHFTSRLGIEQ--AES 419 +R L +PL+V +E++ + +FTSATL+ H+F +LG++ A Sbjct: 375 NRGVFLQASPLNVGLTMQEMLYPRVQCAVFTSATLATGQGEKGFHYFMQQLGLDAQVATC 434 Query: 420 LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 LP FDY QA L + R LP+ PG L ++ A+ GR L TS+ MM Sbjct: 435 EQLPPVFDYGTQARLYLPRRLPEPTAPGFTAMFMEELVDLLHASRGRALCLFTSYRMMGQ 494 Query: 480 LAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDK 539 + + + + PV +QGE K LL+ F + ++L+ TS+FWEGVD+ G LS+V+ID+ Sbjct: 495 VQQLLPSRIPYPVYVQGERPKRALLEMFKNHEASVLLGTSTFWEGVDIPGAALSMVVIDR 554 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LPFT PDDP+ AR C GG+PF ++ +P A++TLKQG GRL+R DRGV+ + D Sbjct: 555 LPFTPPDDPISAARNRYCESEGGNPFMQLSVPQAILTLKQGAGRLLRRRSDRGVIAVLDT 614 Query: 600 RLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 R+ RPYG F+ LPPA D+ F A Sbjct: 615 RISRRPYGKRFINGLPPATCIYDLQEVQHFFA 646 >UniRef50_A0KWC1 Helicase c2 n=22 Tax=Gammaproteobacteria RepID=A0KWC1_SHESA Length = 674 Score = 652 bits (1683), Expect = 0.0, Method: Composition-based stats. Identities = 297/627 (47%), Positives = 390/627 (62%), Gaps = 3/627 (0%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 FA DG LAK I GF R+ Q +MA +++AI ++EAGTG GKT+AYL PA+ + K Sbjct: 46 FASDGVLAKHIQGFSARQSQVEMAQIISEAIASKGNALIEAGTGVGKTFAYLIPAILSGK 105 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 +VI+STGSK LQ+QL+ +DLP ++ L +ALLKGR+NYLC RL++Q + Sbjct: 106 QVIVSTGSKNLQEQLFLKDLPALTSMLGIAPKLALLKGRNNYLCQHRLDKQMQEASHIEA 165 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 ++L D++ + W+ + DGDI SVAE+S A PLV ST + CLG C Y CF KA Sbjct: 166 RLLDDLLKINQWAGMSKDGDIGGLTSVAENSPALPLVVSTKETCLGQRCEFYDACFTRKA 225 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 R +AMDA ++VVNHHLF AD V+K++GF EL+P+ DV+IFDEAH LPDI YFGQ SS Sbjct: 226 RGRAMDAKIIVVNHHLFFADSVLKDTGFAELLPDPDVVIFDEAHLLPDICVSYFGQQSSS 285 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQI 304 R + D + + Y+TEL DT Q+ + R D+ L G + R L N I Sbjct: 286 RTIDDYLQKLLQIYQTELSDTGQIAQFCQRCLTKLSDWHNALFSSG-ESDWRLQLGNKSI 344 Query: 305 QRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECT 364 A L L + + +GRS LLD + T +L + + P +Y E Sbjct: 345 ALASWDLLAELTALQKLLLVHVGRSELLDDIAVKLTELNHKLNQFFNCDNPQAAYSVEFG 404 Query: 365 SRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPS 424 SR L ++P+++A + ++ + SWIFTSATL VN L HF LGI A++ +L S Sbjct: 405 SRFVMLRMSPINIARECQQ-LFVANTSWIFTSATLQVNRSLDHFAQELGISDAKAHILDS 463 Query: 425 PFDYSRQALLCVLRNLPQ-TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQ 483 PFDY RQAL CV R L TNQ + +QL + IEA GR F+L TSH M+ A Sbjct: 464 PFDYPRQALFCVPRQLGNVTNQQQALKQLVDVCVKAIEAAQGRTFILFTSHKMLEQTALA 523 Query: 484 FRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFT 543 R P+L+QG+ K LL +F GNA+L+ TSSFWEGVDVRG LS VIIDKLPF Sbjct: 524 LRTRTQYPLLVQGQAGKQSLLTKFRQLGNAVLLGTSSFWEGVDVRGKLLSCVIIDKLPFV 583 Query: 544 SPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 SPD+PL +AR ++ +GGDPF +V LP A+I LKQGVGRLIRD D GVL++CDNR+V Sbjct: 584 SPDEPLYRARADNISRQGGDPFTQVSLPQAIIALKQGVGRLIRDEKDCGVLILCDNRIVN 643 Query: 604 RPYGATFLASLPPAPRTRDIARAVRFL 630 R YG FL SLPP RTRD+ +A++FL Sbjct: 644 RAYGQAFLNSLPPMSRTRDLDQALQFL 670 >UniRef50_B5EML2 Helicase c2 n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EML2_ACIF5 Length = 641 Score = 652 bits (1682), Expect = 0.0, Method: Composition-based stats. Identities = 258/630 (40%), Positives = 364/630 (57%), Gaps = 3/630 (0%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 G LA+A+P F+ RE Q+ MA V + G ++EAGTGTGKT+AYL PA+ + + Sbjct: 15 LGETGALARALPQFRAREQQQAMAAQVAHTLRDGGVALIEAGTGTGKTFAYLLPAMLSGR 74 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 KV++STGSKALQDQ+ +D+P + +A+ V+ LKGR+NYLC RL++ + G + Sbjct: 75 KVLVSTGSKALQDQILEKDIPLLLRAMGKPLRVSRLKGRANYLCRHRLQRFSAEG--VAP 132 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 +++ + + W+ +T +GD+S SV EDS WPLVTST DNC GS+CP Y C V++A Sbjct: 133 ALVAPLARVADWAGRTREGDVSELTSVPEDSPIWPLVTSTRDNCPGSECPEYGRCHVIEA 192 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 R++A +A+++VVNHHL +D+ +K +G G+L+P D M+ DEAHQ+ D+A +YFGQ LSS Sbjct: 193 RRQAQEAEILVVNHHLLFSDLALKANGMGDLLPRVDAMVLDEAHQVLDLAGRYFGQHLSS 252 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQI 304 QL D +D E D + L A ++ +R LG RG+ L + Sbjct: 253 HQLWDWGRDSRAETLAEAGDDEGLLAAAAQVETQTTAWRTVLGPGDERGSW-ALNPDSAE 311 Query: 305 QRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECT 364 AF L + + R L+ R + + N P +W E Sbjct: 312 GSAFARLRQAVAELGQALNAAAARGKGLEQCAARGVVLLATVDFFAAHNAPNMVFWQEKK 371 Query: 365 SRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPS 424 SR L TPL VA + + + S I TSATL V D LG+ +L S Sbjct: 372 SRTVQLHATPLDVAAPLQRHLLEPVESVILTSATLRVGDSFASTERALGLTAVSTLTAAS 431 Query: 425 PFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF 484 PFDY+RQ+LL + +P+ P R P+IEA+ GR F L TSH +++ A Sbjct: 432 PFDYARQSLLYLPPLMPEPGHPSYTRACLDAAAPVIEASGGRTFFLFTSHRALQEAAVSL 491 Query: 485 RATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTS 544 ++ P+L+QG + +LL +F S GNA+L+ +SFWEGVDV+G+ LS VIIDKLPF + Sbjct: 492 PQRLSFPILVQGSMPRPRLLDRFRSLGNAVLLGAASFWEGVDVQGEALSCVIIDKLPFAN 551 Query: 545 PDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMR 604 P DP+L+AR E C+ GG+PF E+Q+P AVI L+QGVGRLIR DRGVL++CD RL + Sbjct: 552 PSDPILRARTEQCQAEGGEPFRELQIPQAVIALRQGVGRLIRSEMDRGVLMLCDPRLRSK 611 Query: 605 PYGATFLASLPPAPRTRDIARAVRFLAIPS 634 YG FL SLPP R + F + Sbjct: 612 GYGRIFLDSLPPMRRVSSLDAIHAFWRGEA 641 >UniRef50_B2SXR3 Helicase c2 n=26 Tax=Burkholderiales RepID=B2SXR3_BURPP Length = 755 Score = 651 bits (1680), Expect = 0.0, Method: Composition-based stats. Identities = 288/700 (41%), Positives = 385/700 (55%), Gaps = 69/700 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIE------------------------ 36 + + FA +G LA+ I G++ R Q +M+ AV A+E Sbjct: 43 LDEIFAANGLLARQIDGYRSRASQIEMSRAVAAAMEASGRAMPEPAMFEAQKRPARRLQG 102 Query: 37 -------------------KGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQD 77 L+VEAGTGTGKTYAYL PA+ KVI+STG+K LQD Sbjct: 103 AADTAAEAAEGVEAGGLDGSENTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQD 162 Query: 78 QLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWS 137 QL+ RD+PTV AL +VA+LKGR+NYLC L++ A G Q S + + ++ Sbjct: 163 QLFQRDIPTVRDALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQETSYLQDIVRFA 222 Query: 138 NQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVN 197 T GD + SV E + W +VTST +NCLG +CP YKDCFV++AR++A AD+VVVN Sbjct: 223 KITRTGDKAELASVPETAAVWSMVTSTRENCLGQECPHYKDCFVMQARREAQQADIVVVN 282 Query: 198 HHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIA 257 HHLF AD++++++G EL+P A+ +IFDEAHQLP+ A+ +FG++LS+ Q L+LA+D Sbjct: 283 HHLFFADIMLRDTGMAELLPTANTVIFDEAHQLPETATLFFGETLSTTQFLELARDSVAE 342 Query: 258 YRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLEL 317 ++T K L ++A+D RL E R ++ +L + + A L+ L+ Sbjct: 343 GLGHARETVDWVKLGATLERAARDVRLAFKEDSVRLSIGQLADDHPLFPALETLETELDA 402 Query: 318 CYDVAKLSLGRSALLDAAFERATLYRTRLKRL--------------------KEINQPGY 357 R+ + A RA + L E P Sbjct: 403 LASALAGQAERAESIGACLRRARELQGVLAGWTTPPTPTEREAADVASTDGKTERADPNE 462 Query: 358 -SYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ 416 W E S L TPLSVA F + A P +WIFTSATLSV D H+ +++G+ Sbjct: 463 KVRWIEVFSHTVQLHETPLSVAPIFAKQRAGVPRAWIFTSATLSVRGDFTHYAAQMGLNA 522 Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 S+ LPSPFDY Q LL V RNLPQ + P + P IEA+ G FMLCT+ Sbjct: 523 KRSMTLPSPFDYPTQGLLYVPRNLPQPSSPMFTDAVFDAALPAIEASGGGVFMLCTTLRA 582 Query: 477 MRDLAEQFRAT-----MTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDT 531 + ++ + R T P+L+QG+ S+ +LL +F S GNA+LV + SFWEGVDVRGD Sbjct: 583 VDRISAKLRDTIEARGWDYPLLVQGDASRTELLDRFRSYGNAILVGSQSFWEGVDVRGDA 642 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 LSLV+IDKLPF PDDP+L AR+E +G PF QLP AVITLKQG GRLIR DR Sbjct: 643 LSLVVIDKLPFAPPDDPVLSARLEALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDR 702 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 GVL+ICD RLV +PYG SLPP RTR+I F Sbjct: 703 GVLMICDTRLVDKPYGRRIWQSLPPFKRTREIEVVREFFE 742 >UniRef50_Q31G59 Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31G59_THICR Length = 636 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 240/628 (38%), Positives = 351/628 (55%), Gaps = 1/628 (0%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + DGQL++ ++ R Q +MA V + I++ Q L+ EAGTGTGKT+AYL PAL Sbjct: 7 IQSILGKDGQLSQNTSDYEVRHAQVEMAETVAEVIDEDQTLLAEAGTGTGKTFAYLIPAL 66 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + KKVI+ST +K LQDQL +D+P + G +LKGR NY+C +RLE A Sbjct: 67 LSGKKVIVSTATKTLQDQLLRKDIPLLMDICNAKGTAKILKGRENYICPQRLEIAETAEQ 126 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + ++ + L+ W +T+ GD S ++ E+ W V + + C ++C CF Sbjct: 127 NTK-EVWRKLSLIHDWQEKTLIGDKSELTTLDENDPIWSRVCARMEFCQANECTGDNGCF 185 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 +++A DA++++VNHHLF AD+ ++E GFGE++PEAD+ IFDEAHQLPDIA+Q+ G Sbjct: 186 YPGVKQQATDAEILIVNHHLFCADLALREQGFGEILPEADIYIFDEAHQLPDIAAQFLGF 245 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 S+S QL +L +D+ +AY+ E +T +L A + + F LG+ R Sbjct: 246 SVSRFQLDELVRDVRLAYKKESPETIELSDQAKAVEDKIRIFNEALGKWEKRWTWESFSE 305 Query: 301 NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 + L + L L +V K R LL A ++R + +++ + + W Sbjct: 306 AKTGHKTLEHLRNQLSLLAEVIKPITDRGKLLSALYKRTQEFEKQIETWLKASSENQIRW 365 Query: 361 YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL 420 E + F L LTPLSVA F G+WIFTSATLSVN +F RLG+E A + Sbjct: 366 VESSQARFKLNLTPLSVAAPFSRQRDALGGAWIFTSATLSVNQSFDYFAHRLGLESARTH 425 Query: 421 LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL 480 SPFDY +QA++ LP P + P++ A+ GR F+L TSH +++ Sbjct: 426 QWESPFDYEQQAVIYHPIGLPDPKHPDYIKICLRAAWPLLLASQGRAFLLFTSHKALQEA 485 Query: 481 AEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL 540 +++QG+ K LL +F NA+L+ TSSFWEGVDV+GD L LV+ID++ Sbjct: 486 KVILSQHWEGTLMVQGDGPKTTLLARFKETENAILLGTSSFWEGVDVKGDALKLVLIDRI 545 Query: 541 PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR 600 PF PDDP+++AR + +G F Q+P+A I LKQG GRLIRD+ D+GVL++CD R Sbjct: 546 PFIPPDDPVVQARESFLKQKGLSGFFNFQIPEATIALKQGAGRLIRDSSDKGVLMLCDPR 605 Query: 601 LVMRPYGATFLASLPPAPRTRDIARAVR 628 L +PYG S P D+ A Sbjct: 606 LTQKPYGKIITNSFPSFKWVYDVNEAKE 633 >UniRef50_Q1IHL6 Helicase c2 n=3 Tax=Acidobacteria RepID=Q1IHL6_ACIBL Length = 674 Score = 643 bits (1659), Expect = 0.0, Method: Composition-based stats. Identities = 237/656 (36%), Positives = 363/656 (55%), Gaps = 23/656 (3%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 ++ F P G LAK+ P ++ R Q QMA AV QA+ + + L+VEAGTGTGKT AYL P + Sbjct: 20 LSQFFGPGGVLAKSHPAYEFRRGQLQMAQAVEQALTEKRHLIVEAGTGTGKTLAYLVPVI 79 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKAL-----KYTGNVALLKGRSNYLCLERLEQQ 115 R+ +VIISTG+K LQ+QL+ +D+P + +A+ V +KGR+NYLC ++L Sbjct: 80 RSGLRVIISTGTKNLQEQLFYKDVPFLERAIFGAESDQKLKVCYMKGRNNYLCRKKLYDL 139 Query: 116 ALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 + ++ + +R W T GD + +V E S WP + + D C+GS C Sbjct: 140 SDRPVLNGLEEIDQFRQIREWEAVTTTGDRAELTAVPEASLLWPKLDARADACVGSKCKD 199 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG----ELIPEADVMIFDEAHQLP 231 ++ CF+ + R+ AM++D+++VNHHL+ AD+ +K++ G ++PEA +IFDEAH+L Sbjct: 200 FERCFITEMRRTAMESDIIIVNHHLYFADLAIKQAADGAPDVGILPEAAAVIFDEAHELE 259 Query: 232 DIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGY 291 D+A YFG S S+ ++ DL +D+ A + + L + + R + +Q F + + Sbjct: 260 DVAGSYFGVSASNVRVDDLVRDVEFAIKEFHIASPTLLQASQRARERSQLFFSLVPQGEG 319 Query: 292 R---GNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKR 348 R N +E L + FL L + L Y + + L R R +L Sbjct: 320 RFAFENRKEFL--EENGEEFLALQNALGHLYSEIQALKEKPDELFNLARRTEELRVQLSF 377 Query: 349 LKEINQPGYSYWYECTS---------RHFTLALTPLSVADKFKELMAQKPGSWIFTSATL 399 L E N YW E + L TP+ V+ + + + + TSAT+ Sbjct: 378 LLESNDKNTVYWVERRGESRRAGRQGHNVFLQATPIDVSAILQRTLFANLNTAVLTSATI 437 Query: 400 SVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPI 459 +V + RLG++ A L++PS FDY QA+ V ++P + +R+ A +R + Sbjct: 438 AVGGGFQYARGRLGLQDARELVVPSHFDYETQAVFYVPPDMPDPREQLFSRKAADRIRQL 497 Query: 460 IEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATS 519 +E GR F L TS+A M D+ ++ + P+L QG+ K LL++F + A+L ATS Sbjct: 498 LEITRGRAFCLFTSYAQMNDVYDRLLGELDYPMLKQGDAPKSALLEEFRTTPGAVLFATS 557 Query: 520 SFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQ 579 SFW+GVDV+G+ LS VIID+LPF P+DP++ AR+ GG+ F + Q+P AVI LKQ Sbjct: 558 SFWQGVDVQGEQLSCVIIDRLPFAVPNDPVVAARIRAIDADGGNAFFDYQVPSAVIALKQ 617 Query: 580 GVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 G GRLIR DRGV+ + DNR++ + YG F+ SLP RT DI + F A P + Sbjct: 618 GFGRLIRSLHDRGVVCLLDNRILKKQYGRVFVESLPKYWRTTDIRKVEEFFAGPEA 673 >UniRef50_B2JIT4 Helicase c2 n=59 Tax=Betaproteobacteria RepID=B2JIT4_BURP8 Length = 757 Score = 640 bits (1652), Expect = 0.0, Method: Composition-based stats. Identities = 291/702 (41%), Positives = 387/702 (55%), Gaps = 71/702 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQ---------------RQM------------------ 27 + D FA DG LA+ I G++PR Q R M Sbjct: 51 LADIFAADGLLARQIDGYRPRASQIEMARAVAAAMEASGRAMPEPAMFEAQKRPARRLQH 110 Query: 28 -------------AVAVTQAIEKGQP-LVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 A + A+E G+ L+VEAGTGTGKTYAYL PA+ KVI+STG+K Sbjct: 111 TSSASATDAPADQASSPEGALEGGENTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTK 170 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 LQDQL+ RD+PTV AL +VA+LKGR+NYLC L++ A G Q S + + Sbjct: 171 HLQDQLFLRDIPTVRDALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQETSYLQDI 230 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADV 193 ++ T GD + SV E + W +VTST DNCLG +CP YKDCFV++AR++A AD+ Sbjct: 231 IRFAKITRTGDKAELASVPETAAVWSMVTSTRDNCLGQECPHYKDCFVMQARREAQQADI 290 Query: 194 VVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKD 253 VVVNHHLF AD++++++G EL+P A+ +IFDEAHQLP+ A+ +FG++LS+ Q L+LA+D Sbjct: 291 VVVNHHLFFADIMLRDTGMAELLPTANTVIFDEAHQLPETATLFFGETLSTTQFLELARD 350 Query: 254 ITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDD 313 +D K L +SA+D RL E R ++ +L + + A ++ Sbjct: 351 SVAEGLGHARDAVDWVKLGAALERSARDVRLAFKEDSVRLSIGQLPDDHPLFPALEAVET 410 Query: 314 TLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLK------------------EINQP 355 L+ R+ L A RA + L E + P Sbjct: 411 ELDALASALAGQSERAESLGALLRRARELQEVLAGWTAPPTEAERDAASDAGAAPEKSDP 470 Query: 356 GY-SYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 W E S L TPLSVA F + A P +W+FTSATLSV D H+ +++G+ Sbjct: 471 NEKVRWIEVFSHTVQLHETPLSVAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGL 530 Query: 415 EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSH 474 S+ LPSPFDY Q LL V RNLPQ + P + P IEA+ G FMLCT+ Sbjct: 531 NSRRSMTLPSPFDYGTQGLLYVPRNLPQPSSPMFTDAVFDAALPAIEASGGGVFMLCTTL 590 Query: 475 AMMRDLAEQFRA-----TMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRG 529 + +A + R +P+L+QG+ S+ +LL +F S GNA+LV + SFWEGVDVRG Sbjct: 591 RAVDRIASKLRDVIESRGWNMPLLVQGDASRTELLDRFRSYGNAILVGSQSFWEGVDVRG 650 Query: 530 DTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDAD 589 D LSLV+IDKLPF PDDP+L AR++ +G PF QLP AVITLKQG GRLIR Sbjct: 651 DALSLVVIDKLPFAPPDDPVLSARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRSET 710 Query: 590 DRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 DRGVL+ICD RLV +PYG SLPP RTR++ F Sbjct: 711 DRGVLMICDTRLVDKPYGRRIWQSLPPFKRTREMDVVREFFE 752 >UniRef50_B4ST01 Helicase c2 n=23 Tax=Gammaproteobacteria RepID=B4ST01_STRM5 Length = 681 Score = 635 bits (1637), Expect = e-180, Method: Composition-based stats. Identities = 274/642 (42%), Positives = 375/642 (58%), Gaps = 15/642 (2%) Query: 3 DDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA 62 + + G LA + F PR Q ++ A+ A+++ L+ EAGTGTGKT+AYL P L + Sbjct: 10 EALSDGGALASHLDAFVPRPAQLRLTEAIADALQQRDLLLAEAGTGTGKTFAYLVPVLLS 69 Query: 63 KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL 122 + IISTG++ALQDQLY RDLP V +AL ALLKGR+NYLC RL+Q Sbjct: 70 GLRTIISTGTRALQDQLYHRDLPRVRQALGVGLRSALLKGRANYLCRYRLQQARGEPRFS 129 Query: 123 PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVV 182 + + + +WS ++ GDI+ +A+DS P+VTST DNCLG+DCP + DCFVV Sbjct: 130 SPEQAAQFQRILAWSGRSEFGDIAELDGLADDSPLLPMVTSTVDNCLGTDCPFWDDCFVV 189 Query: 183 KARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 +AR++A ADVVVVNHHL LAD+ +K+ GFGEL+P A + DEAHQLP++A+Q+FG+ Sbjct: 190 RARQRAQAADVVVVNHHLLLADLALKQDGFGELLPGAQAFVIDEAHQLPELAAQFFGEGF 249 Query: 243 SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANP 302 R +L +D R LQ+ D+L Q+ R + RG LA P Sbjct: 250 GMRPWQELGRDCLAEARGVGGAQSALQEPVDQLQQALLALRSAMEGLPSRGTQWRALAMP 309 Query: 303 QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQP------- 355 Q++ F + L + + +A LDA RA +RL R ++P Sbjct: 310 QVRDGFDTVMAGLVMLEQALQPLREAAAGLDACHARAREAVSRLSRWLGDDEPTLDFDTD 369 Query: 356 -------GYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHF 408 WYE T R F TP+ V+ +E + +WIFTSATL+V H Sbjct: 370 PSEANSAADVLWYELTPRGFRCQRTPMDVSGPLREHRERSRAAWIFTSATLTVGGGFDHI 429 Query: 409 TSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCF 468 +RLG++ +L+ PSPF++ QAL + LP G L LRP+++A+ GR F Sbjct: 430 ATRLGLDDPHTLVQPSPFNWPEQALCYMPEGLPDPAARGFGTALIQSLRPVLQASQGRAF 489 Query: 469 MLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 +L SH +R+ AE R P+ +QGE + LLQ+F +GN +L+ ++SF EGVDV Sbjct: 490 LLFASHRALREAAEALRDG-PWPLFVQGEAPRATLLQRFRESGNGVLLGSASFREGVDVV 548 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 G+ LS+V+IDKLPF +PDDP+ +AR+E R +GG+PF + QLP AVI LKQGVGRLIR Sbjct: 549 GEALSVVMIDKLPFAAPDDPVYEARLEAIRSQGGNPFRDEQLPQAVIALKQGVGRLIRSE 608 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 DRGVLV+CD RL+ R YG FL SLPP RTR +A F Sbjct: 609 SDRGVLVLCDPRLLNRGYGRVFLDSLPPFRRTRSLADVQAFF 650 >UniRef50_Q5ZU85 ATP dependent DNA helicase (DEAD box family) Rad3 n=6 Tax=Legionella RepID=Q5ZU85_LEGPH Length = 666 Score = 634 bits (1636), Expect = e-180, Method: Composition-based stats. Identities = 269/629 (42%), Positives = 370/629 (58%), Gaps = 6/629 (0%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 + G+L+ AIPGF R PQ +AVA+ AI + LV EAGTGTGKT+AYL P L + K Sbjct: 29 LSEKGRLSTAIPGFVARAPQADLAVAIANAIVQRSILVAEAGTGTGKTFAYLLPCLLSGK 88 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 K +IST +K LQDQL+ +DLPT+ +AL + + LKGRSNY+C R+E+ A G Sbjct: 89 KALISTATKTLQDQLFQKDLPTLIRALGLSVRIQNLKGRSNYICQYRVEKHAEEGQFQSP 148 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 Q +++ +R +Q +G S + EDS W VTST DNCLG++CP ++ CF+VKA Sbjct: 149 QCAHEILHVRDKLSQMQEGVRSELPEINEDSSVWHYVTSTTDNCLGAECPNHETCFLVKA 208 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 RK+AM+AD+VV+NHHLF AD +K+ GF EL+P DV++FDEAHQL DIAS + G+ L + Sbjct: 209 RKRAMEADIVVINHHLFFADSQLKKDGFSELLPGVDVVVFDEAHQLADIASNFNGERLGT 268 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQI 304 RQ DL D+ + Q L+ + + + L R + + N + Sbjct: 269 RQFKDLVDDMLNEWPILDLANQPLKSISHKADKLVDQLLNALPTREERISWDLVKRNKEF 328 Query: 305 QRAF---LLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 A+ L L D L C + L ER T L E N W Sbjct: 329 MEAWNTWLSLKDELIQCLE--SKDTADIPGLKRCKERLLDLETVLLSFTEENNHK-IRWI 385 Query: 362 ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL 421 E TP VA+ F +L+ + ++IFTSATL++ F LG+++ ++LL Sbjct: 386 ERFKHTLVFHATPYDVAESFSQLLKDQSCAYIFTSATLTMASVFDSFCKPLGLDKVQTLL 445 Query: 422 LPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 L SPFDY +QALL + R +P L P+IEA GRCF L TSH ++ +A Sbjct: 446 LSSPFDYQQQALLYLPRGIPDPKDAHYYEALLEKALPVIEACGGRCFFLFTSHKAVKLVA 505 Query: 482 EQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLP 541 + T+ P+L+QG+ +K LL +F GNA+L+ TS+FWEGVDV+G+ LS VIIDKLP Sbjct: 506 QMMSNTLKYPLLIQGDEAKPILLSRFRQLGNAVLLGTSTFWEGVDVKGEALSCVIIDKLP 565 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 F +P DP+++ RM + +G FDE+ LP+AVI LKQGVGRLIRD D+G+L+I D RL Sbjct: 566 FANPVDPVIRGRMSYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITDKGILMIADPRL 625 Query: 602 VMRPYGATFLASLPPAPRTRDIARAVRFL 630 R YG T LASLP P+TRD + + F+ Sbjct: 626 TGREYGRTILASLPGLPKTRDEEKVLHFI 654 >UniRef50_B9ZQY0 Helicase c2 n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQY0_9GAMM Length = 664 Score = 634 bits (1635), Expect = e-180, Method: Composition-based stats. Identities = 291/641 (45%), Positives = 381/641 (59%), Gaps = 10/641 (1%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKG-QPLVVEAGTGTGKTYAYLAPALRAK 63 +P G LA+A+ GF+PREPQ++MAVAV A+ + L+VEA TG GKT+AYL PAL+A+ Sbjct: 21 LSPGGDLAEALHGFRPREPQQRMAVAVESALGQAPTALLVEAATGVGKTFAYLVPALQAR 80 Query: 64 KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG--- 120 +K +ISTG+K LQDQL+ RDLPTV +AL Y ALLKGR+NYLC RLE A G Sbjct: 81 RKALISTGTKTLQDQLFERDLPTVCEALGYRPRTALLKGRANYLCHYRLELAAAEAGGQT 140 Query: 121 --DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 + + + LR ++ GD+ +AEDS WP VTST DNCLG +CP Y D Sbjct: 141 QRSAQRERMPVIEALRQFARTHPTGDLGQAGILAEDSPLWPQVTSTVDNCLGGECPQYND 200 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYF 238 CFVV+ARK+A DAD+VVVNHHL LADM +KE GFGEL+PE D +I DEAHQLP+IA +F Sbjct: 201 CFVVQARKRAQDADIVVVNHHLLLADMALKEEGFGELLPEVDAVIVDEAHQLPEIAGAFF 260 Query: 239 GQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLREL 298 G S+ SR L DLA+D+ + +++ A L + R + Sbjct: 261 GVSVGSRALRDLARDVRREQEQAAPEMVMIREAAVELETVVKKLLEATQGMEPRAAWDVV 320 Query: 299 LANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYS 358 Q+ + LD+ L D + R L+ R L R RL+ +E + P Sbjct: 321 NEKGQVDPSLEELDEALRALSDALAPATERGPGLEQVQGRVLLMRERLQGWRE-DTPDTV 379 Query: 359 YWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QA 417 W E ++ L TPL A + A +P +W+FTSATL+V +D H + RLG+ Sbjct: 380 AWVERFAQSLILHRTPLDAARPLAQRRAARPAAWVFTSATLAVGEDFTHASRRLGLPVDV 439 Query: 418 ESLLLPSPFDYSRQALLCVLRN-LPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 L SPFD++RQA L + LP N P R A P++ N G F L TSH Sbjct: 440 AQQRLESPFDFARQACLVHPQPPLPNPNSPDYTRACVAWAWPLLRDNPGGGFFLFTSHRA 499 Query: 477 MRDLAEQFRATM-TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 +++ A RA + +L+QGE + LL +F +GNA L+ SFWEGVD+RG+ LS+V Sbjct: 500 LQEAAALLRAELPDRELLVQGEQPRNDLLARFRESGNAWLLGAHSFWEGVDIRGEALSVV 559 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 IID+LPF +P+DP+L+AR + G PF E LP AV+ LKQG GRLIRDADD G+L Sbjct: 560 IIDRLPFAAPNDPVLQARAQALEAEGRSPFMEFSLPQAVLALKQGAGRLIRDADDAGILA 619 Query: 596 ICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR 636 ICD RL +PYG FLASLPP RTRD A++FLA R Sbjct: 620 ICDPRLTGKPYGRRFLASLPPFYRTRDPIAALQFLATARER 660 >UniRef50_A0LLQ3 Helicase c2 n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLQ3_SYNFM Length = 646 Score = 627 bits (1616), Expect = e-178, Method: Composition-based stats. Identities = 223/641 (34%), Positives = 326/641 (50%), Gaps = 7/641 (1%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 M F PDG LA+ + F+ R Q +MA AV +A+ PLVVEAGTGTGKT+AYL PA+ Sbjct: 1 MRRYFGPDGLLAENVTHFEFRPSQLEMAEAVLEALGARSPLVVEAGTGTGKTWAYLVPAI 60 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + K+ ++STG+K LQDQ+ +D+P + + + LKGR NYLC R + + Sbjct: 61 LSGKRTVVSTGTKTLQDQILDQDIPFLKRTVYPKLRAVCLKGRGNYLCHRRFKDFSYQPT 120 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + W+ +T GD + + + W V S ++CLG C + CF Sbjct: 121 LWNKDEAKLWSRFQKWATRTRTGDRAEISWLPDQFHTWNEVCSAGEHCLGQQCSDVQRCF 180 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 V + R +A A +VVVNHHLF AD+ +++ ++PE D +IFDEAHQL D+ QYFG Sbjct: 181 VTRLRAEAAQAHLVVVNHHLFFADLALRDKADTGVLPEYDAVIFDEAHQLEDVMGQYFGI 240 Query: 241 SLSSRQLLDLAKDITIAYRTE------LKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN 294 +S L++L + + ++ E D +++ + + L + ++ R Sbjct: 241 QFNSYGLMELTRVLQREFKKETGASHRFHDARRIVQQLEVLNRLLHRHLFEVRGSQGRFP 300 Query: 295 LRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ 354 L ++ L L+ + + +A RA+ ++ L Sbjct: 301 LDMSRMGKNFVQSCNQLIHALDELAPMIAPAEDLPLSFEAYHRRASDLSGAVRMLLAQED 360 Query: 355 PGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 YWYE L TP+ V F+ + I TSATLSV LGI Sbjct: 361 ESLVYWYEVGQNALFLNATPIEVCSIFRRRVLTPNRPVILTSATLSVAGSFDFVRQSLGI 420 Query: 415 -EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTS 473 ++S+ LPSPF Y+ Q +L + R P N+ RQ+A I+ GR L TS Sbjct: 421 APDSKSIRLPSPFAYAEQTMLYIPRRFPAPNEHDFCRQIAEQSVEILLKTRGRALFLFTS 480 Query: 474 HAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLS 533 + M ++ + R + P+L+QG+ K LL +F + ++L ATSSF +G+DV G+ LS Sbjct: 481 YRNMNEVHQLLRDRLPYPILVQGQKPKRALLAEFKESIGSVLFATSSFRQGIDVPGEALS 540 Query: 534 LVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGV 593 ++IDKLPF PDDPL ARM+ +G F Q+P AVI LKQGVGRLIR + DRG+ Sbjct: 541 CLLIDKLPFEVPDDPLAAARMDFITRQGKSSFFGYQVPRAVIQLKQGVGRLIRSSSDRGL 600 Query: 594 LVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPS 634 +VI D RL+ + YG FL SLPP + F PS Sbjct: 601 IVIFDVRLLQKNYGQIFLKSLPPCRLVHQLDAIDEFQWGPS 641 >UniRef50_Q1CXN9 Putative ATP-dependent helicase n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CXN9_MYXXD Length = 662 Score = 624 bits (1610), Expect = e-177, Method: Composition-based stats. Identities = 239/648 (36%), Positives = 354/648 (54%), Gaps = 19/648 (2%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + P G L A+P ++ R Q QMA AV +A + L+ EAGTGTGKT AYL PAL Sbjct: 11 VDSLLGPGGALEVALPAYEHRPEQLQMARAVERAFAEHSYLLAEAGTGTGKTLAYLVPAL 70 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + ++V++ST +K LQDQ++ +DLP + + + A LKGRSNYLCL R + + A Sbjct: 71 LSGRRVVVSTATKTLQDQIFFKDLPLMREKMGLRFEAAYLKGRSNYLCLHRYDAFSKAPQ 130 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + L++W+ +T GD S + E AW +++T++ C+G+ CP Y+ CF Sbjct: 131 FGSREESRYWPKLKAWAEETDTGDRSEL-DLPESFSAWSRLSTTSETCVGTRCPQYETCF 189 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGF--GELIPEADVMIFDEAHQLPDIASQYF 238 V + RK+A AD++VVNHHLF AD+ ++ SG ++P + +IFDEAH L D AS +F Sbjct: 190 VTRMRKRAEQADLLVVNHHLFFADLALRSSGKRTEGVLPWYEAVIFDEAHALEDAASGHF 249 Query: 239 GQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQ----LGEPGYRGN 294 G S+S+ +L +LA+D + + + L+ A RL A Q LG G+ + Sbjct: 250 GCSVSNYRLEELARDAVASLKEDDARHAMLRALAARLRAGADALFAQAPRALGLSGHEAS 309 Query: 295 LRELLANPQIQRAFLLLDDTLELCYDVAKLSLG-RSALLDAAFERATLYRTRLKRLKEIN 353 + L + + L+ + ++ ++G R L A R+ +L L++ Sbjct: 310 V--ALRAEVMAKLSTPLEGVRDALAALSAFTVGEREPELAAITRRSDEMEEQLSFLEKAE 367 Query: 354 QPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG 413 + YW E + L +P+ VA + +E M + ++TSATL+ + F +R+G Sbjct: 368 SSDHVYWAEQRGKGLFLRASPIDVAKELRERMYGALDTVVYTSATLAADSRFDFFANRMG 427 Query: 414 I--------EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNG 465 + + +L +PSPFDY QA L + +LP + PG + A + + E G Sbjct: 428 LYGEDGQPVTRVRTLAVPSPFDYPSQAALYLPTHLPDPSAPGFIEEAAEEIERLCEVTGG 487 Query: 466 RCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGV 525 R F+L TS M E + LLQGE K QLL+ F ++L A SFWEGV Sbjct: 488 RAFVLFTSLRNMVRAYELVAPRLPYQSLLQGERPKQQLLEAFRETP-SVLFAAHSFWEGV 546 Query: 526 DVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLI 585 DV GD LSLVIID+LPF SP DPL+ AR+ + RG +PF++ QLP A + L+QG GRLI Sbjct: 547 DVPGDALSLVIIDRLPFASPGDPLVAARINQLQQRGEEPFEQYQLPHAALALRQGFGRLI 606 Query: 586 RDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIP 633 R DRG++ + D R+V + YG FL SLPPA R D+ R+ P Sbjct: 607 RTQSDRGIVAMLDRRIVTKAYGRVFLDSLPPARRMEDVVSLSRWFNGP 654 >UniRef50_Q6AMF2 Related to ATP-dependent helicase n=2 Tax=Proteobacteria RepID=Q6AMF2_DESPS Length = 776 Score = 623 bits (1608), Expect = e-177, Method: Composition-based stats. Identities = 227/658 (34%), Positives = 351/658 (53%), Gaps = 25/658 (3%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKG------------QPLVVEAGTG 48 + D F +G+LA I ++PR Q++MA AV++++ + LVVEA TG Sbjct: 120 LEDFFGENGRLAGLIDHYQPRSGQQEMAQAVSRSLMDSNDPDPHAVSAPPRVLVVEAETG 179 Query: 49 TGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLC 108 GKT AYL PA+ + K+V++ST ++ LQDQ+ +++P + K + +KGR NYLC Sbjct: 180 IGKTLAYLLPAVISGKRVVVSTATRNLQDQIIHKEIPLLEKMFGGRVSAQCVKGRQNYLC 239 Query: 109 LERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC 168 L + Q + L + D + W TV GD + +A+D+ W ++S +D C Sbjct: 240 LYKWYQHR-SSAQLSLIAQDDEDKIEQWLASTVTGDRAELHWLADDASLWHKISSQSDQC 298 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAH 228 LGS+CP ++CF+ + R++A A +++VNHHLF +D+ +K+ G+GE++P +IFDEAH Sbjct: 299 LGSECPEQENCFISRLRRRAAAARILIVNHHLFFSDLALKKEGYGEILPRYQAVIFDEAH 358 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCAD------RLAQSAQDF 282 L DIA+ +F +S SS QL D+ D L + + RL F Sbjct: 359 HLEDIATTFFAKSFSSYQLRDILSDAERLGDKILVSDEHKNLLSRLSGMRVRLNAFMHVF 418 Query: 283 RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLY 342 + G+ + + E Q LL +L + L + R Sbjct: 419 PKKRGKTALKELVTEYGQEAWQQEVELLATGIAKLIVALTDLHF-KGEGWQTLVRRCQEC 477 Query: 343 RTRLKR---LKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATL 399 L+ ++ Y +W+E + L++TP+SVA + E + S I TSATL Sbjct: 478 HDNLRLTGLARDTTSSNYVHWFEHREKSIVLSVTPISVAKELNEFLYAGVESTIMTSATL 537 Query: 400 SVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCVLRN-LPQTNQPGSARQLAAMLR 457 S+ + + RLG+ + L SPF Y QALL + P+TN P ++ + Sbjct: 538 SIGEKFDYLRERLGLPADTKYLRFASPFAYKEQALLYIPEGGFPETNAPDYGQKSCERIL 597 Query: 458 PIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVA 517 I+E + GR +L TS + M A + +L+QG S+ LL++F + +++L+A Sbjct: 598 QILEQSRGRALILFTSFSAMERAATWLTDKIDYRMLVQGRHSRKHLLEEFKADRDSVLLA 657 Query: 518 TSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITL 577 +SFWEG+DV G+ LS VIIDKLPF P DP+++ARME + GG+PF + Q+P AV+TL Sbjct: 658 VASFWEGIDVAGEALSCVIIDKLPFEVPTDPVIQARMEYIKAAGGNPFMDFQVPRAVLTL 717 Query: 578 KQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 +QGVGRL+R DRG++ I D RL + YG FL SLPPAP TR + +F + + Sbjct: 718 RQGVGRLMRSDRDRGLITILDIRLFSKFYGKRFLRSLPPAPVTRSLDEVKKFFSTEKT 775 >UniRef50_A9IIW5 Probable ATP-dependent helicase n=6 Tax=Proteobacteria RepID=A9IIW5_BORPD Length = 693 Score = 617 bits (1592), Expect = e-175, Method: Composition-based stats. Identities = 266/683 (38%), Positives = 373/683 (54%), Gaps = 53/683 (7%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 +++ FA DG LA A+PG+ PR Q ++A A+ +AI LV EAGTG GKT+AYL PA Sbjct: 6 ISEFFAADGPLASALPGYAPRPAQVELAQAIGRAITDRATLVAEAGTGIGKTWAYLVPAF 65 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 A KVIISTG++ LQDQLY+RDLP V AL ALLKGR+NY+C L++ Sbjct: 66 VAGGKVIISTGTRTLQDQLYTRDLPRVRAALAAPVTAALLKGRANYVCHYHLDRLQGDER 125 Query: 121 DLPVQ-ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 L + +S + ++ ++ + GD + V ED+ W VTST +NCLG DCP +DC Sbjct: 126 ALKSRTEISQLRQIQVFAGISKTGDRADLGKVPEDADIWQRVTSTRENCLGQDCPRIRDC 185 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 FVVKAR++A +ADVVVVNH LF+AD+V++E G +L+PEAD +IFDEAHQLPD A+++ G Sbjct: 186 FVVKARRQAQEADVVVVNHALFMADLVLREEGVTDLLPEADTVIFDEAHQLPDTATRFLG 245 Query: 240 QSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE----PGYRGNL 295 S+S+ QLLD + + A ++ + + ++ +A++ RL PG + Sbjct: 246 SSVSTHQLLDFGRALEAAGLAYAREAAKWSDVSRQVETAARELRLACAPLDQLPGRKATF 305 Query: 296 RELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQP 355 + Q A L ++ + L AA RL R + Sbjct: 306 EAIPEPAQFDAALAALRQAVDAATRALGAVAEKHPDLAAAARGGAEISLRLARWALPARE 365 Query: 356 GY------------------------------------------SYWYECTSRHFTLALT 373 G W E H L Sbjct: 366 GAAHDDEGWGRDTHALTQPADDGPAVPQAVLQGLSAAADYTGPAVRWVEHGQHHVRLHSA 425 Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQAL 433 PLSVA F + +WI TSATLSV+ D HH+TS+LG+ A + SPFDY+ Q L Sbjct: 426 PLSVAQAFSR-FRKPGQAWILTSATLSVHGDFHHYTSQLGLNDARTGRWESPFDYTGQGL 484 Query: 434 LCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT---- 489 L V R++P+ P A + L P+++A+ G +LCT+ + +A Sbjct: 485 LFVPRDMPEPQSPRFAERFVQTLMPLLQASPGGTLVLCTTLRAVDRVAGLLAEAFEDHGH 544 Query: 490 -LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDP 548 P+L QG+ ++ LL++F + +LV ++SFWEG+D+ GD L+LV IDKLPF PDDP Sbjct: 545 EWPLLKQGDATRRDLLERFCKLEHPVLVGSASFWEGIDLPGDVLTLVAIDKLPFAPPDDP 604 Query: 549 LLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGA 608 +++AR+ CR+RGG+PF E QLP+A I+LKQG GRLIR D GVL++ D RLV +PYG Sbjct: 605 VIEARLRACRVRGGNPFAEYQLPEAAISLKQGAGRLIRTESDWGVLMVGDARLVEKPYGK 664 Query: 609 TFLASLPPAPRTRDIARAVRFLA 631 LPP RTRD+ + F A Sbjct: 665 RLWRGLPPFSRTRDLNEVLAFYA 687 >UniRef50_Q1NJC5 Helicase c2 n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NJC5_9DELT Length = 698 Score = 614 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 229/666 (34%), Positives = 347/666 (52%), Gaps = 32/666 (4%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQ--------------------P 40 M + FA G LA+ +P ++PRE Q MA AV ++ Sbjct: 33 MGEIFAVGGLLARYLPDYEPREGQLSMAQAVAATLDPETAEELPPPETSGPERAPHPTPR 92 Query: 41 LVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALL 100 L+VEAGTGTGKT AYL PA+ + ++V++ST + LQ+Q+ ++++P + + L + Sbjct: 93 LLVEAGTGTGKTLAYLVPAVLSGRRVVVSTNTINLQEQILAKEIPFIQRYLAPWLQAMCV 152 Query: 101 KGRSNYLCLERLEQQALAGGDLPV----QILSDVILLRSWSNQTVDGDISTCVSVAEDSQ 156 KGR NYLCL R Q + Q + + L W +T GD + +A+DS Sbjct: 153 KGRGNYLCLRRWHQFLAKHRQGQLFTGNQGGAQLEQLAGWVEETDSGDKAELSELADDSP 212 Query: 157 AWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI 216 W + + +CLGS CP +CF+ R+KA A +++VNHHLF +D+ V+ G E++ Sbjct: 213 LWASLNAAGGHCLGSSCPHGAECFITTLRRKAARAHLLIVNHHLFFSDLAVRRFGHAEVL 272 Query: 217 PEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELK--DTQQLQKCADR 274 P + ++FDEAH L +IA+++FG SLS QLLDL +D+ L+ D +L + A Sbjct: 273 PRYEAVVFDEAHHLENIATRHFGLSLSHYQLLDLVRDLESMAEERLRENDRARLLQHARA 332 Query: 275 LAQSAQDFRLQLGEPGYRGNLRELLAN-PQIQRAFLLLDDTLELCYDVAKLSLGRSALLD 333 L A R L LLA P L + + + + Sbjct: 333 LGVEADRLNHFFPASRGRFPLPPLLAEHPDWPGLLEDLRGDFRALAGDLEGLAQLAEIWN 392 Query: 334 AAFERATLYRTRLKRLKEINQPGY---SYWYECTSRHFTLALTPLSVADKFKELMAQKPG 390 R L+ + + + YWYE + + +P+ +A +E + + Sbjct: 393 PPLRRVRELADTLEAICQPPEDDAGNDIYWYERLEKTVFIGRSPIDIAPHLREHLHNQVK 452 Query: 391 SWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCVL-RNLPQTNQPGS 448 + +FTSATL D + +RLG+ + L L +PFDY+ + LL V + +P G Sbjct: 453 ATVFTSATLRTGKDFRYVKNRLGLPADSPELALETPFDYAGRTLLYVPSQEMPPPGASGH 512 Query: 449 ARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV 508 ++R +++ + GR +L TS MR A + T+ P+L+QG+ + LL+QF Sbjct: 513 PEASRRLMRELVQCSRGRALLLFTSLGAMRQAAAELAGTLPYPLLIQGDAPRQLLLEQFR 572 Query: 509 SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEV 568 ++L+A +SFWEGVDV G++LS VIIDKLPF P DP++ AR+E + GG+PF + Sbjct: 573 RRTGSVLLAVASFWEGVDVPGESLSCVIIDKLPFEVPSDPVIMARVEKIKKDGGNPFFDF 632 Query: 569 QLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVR 628 Q+P AV+ L+QGVGRL+R DRGVL I D RL + YG FL SLPP+P R++AR Sbjct: 633 QVPRAVLMLRQGVGRLLRSTADRGVLAILDGRLFSKSYGRIFLQSLPPSPVCRELARVRE 692 Query: 629 FLAIPS 634 F A S Sbjct: 693 FFADES 698 >UniRef50_C8R1Z3 Helicase c2 n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1Z3_9DELT Length = 707 Score = 612 bits (1579), Expect = e-173, Method: Composition-based stats. Identities = 235/703 (33%), Positives = 359/703 (51%), Gaps = 72/703 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQP-----------------LVV 43 M + FA G L++ +PGF+PRE Q MA AV + +P ++ Sbjct: 1 MEEIFAAGGLLSRELPGFEPREGQLAMARAVAATLNGNEPSPGGAPEQPAAAHGGRLVLA 60 Query: 44 EAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGR 103 EAGTGTGKT AYL PA+ + +KV+IST + LQ+Q+ ++++P + + L +KGR Sbjct: 61 EAGTGTGKTLAYLVPAVLSGRKVVISTNTINLQEQILAKEIPFIRRHLAPGLKALCVKGR 120 Query: 104 SNYLCLERLEQQ------ALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQA 157 NYLCL R Q L + Q ++ + +W N+T GD +A+DS Sbjct: 121 QNYLCLYRWHQLQINPQGRLFSKGVSDQDEQNLETIAAWLNETGTGDRGELRGLADDSPL 180 Query: 158 WPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIP 217 W +++ +CLGS CP DCF+ + R++A + +++VNHHLF +D+ V+ G E++P Sbjct: 181 WAGISAAAGHCLGSSCPHGADCFITRLRQRAARSQLLIVNHHLFFSDLAVRRFGHAEVLP 240 Query: 218 EADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELK--DTQQLQKCADRL 275 + +IFDEAH L +IA+++FG +LS Q++DL +D+ L+ D + + L Sbjct: 241 RYEAVIFDEAHHLENIATRHFGLALSHYQIIDLVRDLEGMAEARLRERDRAGVVQAVRAL 300 Query: 276 AQSAQDFRLQLGEPGYRGNLRELLA-NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA 334 A A F R LREL+A P+ L+ + G + Sbjct: 301 AAEASLFLDFFPARRGRFPLRELIAAEPRWPELCSTLETAFAAVIRPLEKLAGCEEIWGP 360 Query: 335 AFERATLYRTRLKRLKEINQ---------------------------------------- 354 R K + Q Sbjct: 361 VLRRCQDLLATFKTITSPPQLAVPSVGAAPGGHDAMPQPPRDADGLATTAETPGRPSPPA 420 Query: 355 ----PGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTS 410 YWYE + LA++P+ VA +E + ++ + +FTSATL +D + + Sbjct: 421 PVAADSAIYWYERREKTVQLAVSPIDVAGHLQEHLYRQVKAAVFTSATLRTGNDFRYVKA 480 Query: 411 RLGIE-QAESLLLPSPFDYSRQALLCVL-RNLPQTNQPGSARQLAAMLRPIIEANNGRCF 468 RLG+ +L L +PFDY+ + LL V ++ P N+ + ++R II + GR Sbjct: 481 RLGLPADCPALDLATPFDYAGRTLLYVPDQDFPAPNEAAYPARARQLMREIIGHSRGRAL 540 Query: 469 MLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 +L TS M A + + PVL+QGE + LL++F S ++L+A +SFWEGVDV Sbjct: 541 LLFTSVNAMHQAAAELAGKVPYPVLVQGEAPRSALLEEFRSRTRSVLLAVASFWEGVDVP 600 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 G++LS VIIDKLPF P DP++ AR++ R GG+PF + Q+P AV+TL+QGVGRL+R Sbjct: 601 GESLSCVIIDKLPFEVPSDPVIMARVDKIRAEGGNPFFDFQVPRAVLTLRQGVGRLLRSN 660 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 D+GVL I D RL + YG TFL SLPP+P +R++A +F + Sbjct: 661 ADQGVLAILDVRLFSKGYGRTFLKSLPPSPLSRELAAVKKFFS 703 >UniRef50_C6NRY2 DinG family ATP-dependent helicase YoaA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NRY2_9GAMM Length = 646 Score = 611 bits (1576), Expect = e-173, Method: Composition-based stats. Identities = 264/637 (41%), Positives = 364/637 (57%), Gaps = 10/637 (1%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 D L + +P F R Q++MA V + +G +VEAGTGTGK++AYL PAL ++ Sbjct: 11 LGADSPLRRILPHFHVRRQQQEMAAQVAGWLAEGGVGLVEAGTGTGKSFAYLLPALLCER 70 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 KV+IST S+ALQDQ+ +D+P +++A V LKGRSNYLC RL++ G + Sbjct: 71 KVLISTASRALQDQILDKDIPVLAQAWSSPRRVVRLKGRSNYLCPFRLQRALAEG--VAP 128 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 ++ D++++ W+ +T +GDI+ ++ E S WPLVTST DNCLGSDCP + C V+ A Sbjct: 129 RLARDLLVVADWAGRTGEGDIAELSALPESSPVWPLVTSTRDNCLGSDCPEFARCPVIAA 188 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 RK+A++ADVVVVNHHL LAD+ ++ G+L+P D +I DEAHQL D+A QYFGQ LSS Sbjct: 189 RKRALEADVVVVNHHLLLADLALRVESRGDLLPRVDAVIIDEAHQLADLAGQYFGQHLSS 248 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQI 304 QLL+ A+D A +D +L A RL Q + + Q + + E + P Sbjct: 249 HQLLEWARDSRQALLAAARDDAELGLPA-RLEQHIEHWLAQGQQLPGGESRWEWPSFPVQ 307 Query: 305 QRAFLLLDDTLELCYDVAKLSLGR--SALLDAAFERATLYRTRLKR-LKEINQPGYSYWY 361 L E + L R S L+ R L+ LK ++P W Sbjct: 308 VLTASLRQVASEAAQLESTLQSLREFSKELEQCAGRGEQLTGLLEFFLKPESEPSAVRWL 367 Query: 362 ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE--- 418 E R L +P+ + + + + + I SATL V D +RLG+ + E Sbjct: 368 ERRGRGLLLHASPIDLGPLLRGELFARNATTILVSATLRVGGDFGALEARLGLVEGEPSP 427 Query: 419 -SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 + SPFDY+ QALL + +P+ P P+IEA+ GRCF L TSH + Sbjct: 428 QHFVADSPFDYTCQALLYLPPQMPEPASPQFTAACIEAAIPVIEASGGRCFFLFTSHRAL 487 Query: 478 RDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 R+ A + + P+L+QG + +LL F AGNA+L+ +SFWEGVDV+G+TLS VII Sbjct: 488 REAAVELPQRLDFPILVQGSMPRARLLDAFRRAGNAVLLGAASFWEGVDVQGETLSCVII 547 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 DKLPF +P DP+L+A C GGDPF ++QLP AVI L+QGVGRLIR DRGVL IC Sbjct: 548 DKLPFANPGDPVLRAHHRHCAAMGGDPFRDLQLPQAVIALRQGVGRLIRSESDRGVLTIC 607 Query: 598 DNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPS 634 D RL+ + YG FL SLPP P +DIA F + Sbjct: 608 DPRLLNKGYGRIFLRSLPPIPVVQDIAAVREFWRGGA 644 >UniRef50_C7I1U8 Helicase c2 n=1 Tax=Thiomonas intermedia K12 RepID=C7I1U8_THIIN Length = 676 Score = 611 bits (1575), Expect = e-173, Method: Composition-based stats. Identities = 252/648 (38%), Positives = 351/648 (54%), Gaps = 24/648 (3%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 F+P L + +P + RE QR++A+AV AI L+ EAGTGTGKT AYL PAL Sbjct: 27 FSPGSPLQEELPQWSVREGQRELAMAVAGAIADRAILMAEAGTGTGKTLAYLVPALLHGG 86 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 +VIIST ++ LQDQLY++DLP +AL + +LKGRSNY+CL RL++ A Sbjct: 87 RVIISTATRNLQDQLYNKDLPAARRALGAAVSTCVLKGRSNYVCLYRLQRAAEWVHGR-- 144 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + + + ++ GD+S + E+S LVTST DNCLG+DCP YK CFV+KA Sbjct: 145 HAHAQLRRITQFAKSDARGDLSALSGLEENSALNFLVTSTTDNCLGADCPDYKACFVMKA 204 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 R++A+ +DVV++NHHLF AD+ ++ G EL+P AD +I DEAHQL +I Q+ G + Sbjct: 205 RREALASDVVIINHHLFFADLALRGEGVAELLPTADTLILDEAHQLAEIGVQFLGARCGT 264 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQI 304 Q++DL++D+ K Q + L ++A+D RL + R + ++L P Sbjct: 265 AQVVDLSRDVLAGGLQHAKGLADWQTLSGALERAARDLRLAAPQNPGRLSQPQVLDLPGW 324 Query: 305 QRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGY------S 358 A L L +V + +A + +R T + P Sbjct: 325 DVALHDLQAQLAHTAEVLSAHVEAAAEFERLMDRCTALHQAFSSWQAAPDPDQTDAPPQV 384 Query: 359 YWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI---- 414 W + S H L PLS+A F L+AQ+ +WIFTSATLSV H + LG+ Sbjct: 385 RWADVGSAHLRLQAAPLSIAPAFAALVAQRSQAWIFTSATLSVGGSFRHARAALGLTSEQ 444 Query: 415 -----------EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEAN 463 + L + SPFDY+ Q L V ++LP NQPG + + A+ + N Sbjct: 445 GGCAPVEGGVAPRCRELRVASPFDYAEQGRLLVPQDLPLPNQPGHSESVGALAAQLATGN 504 Query: 464 NGRCFMLCTSHAMMRDLAEQFRATMT-LPVLLQGETSKGQLLQQFVSAGNALLVATSSFW 522 G F+L T+ + +A+ RA + VL Q + SK LL +F S A+LV + SFW Sbjct: 505 TGGTFVLTTTLRAAKIIAQTLRALLPGRAVLEQFDESKAALLARFASTSQAVLVGSQSFW 564 Query: 523 EGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVG 582 EGVD+ GD L+LVIIDKLPF PDDPL AR++ G F + +P A ++L+QG G Sbjct: 565 EGVDLPGDRLTLVIIDKLPFAPPDDPLTAARLKQIEAEGRSGFADYSMPQAALSLQQGAG 624 Query: 583 RLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 RLIR DRGVLV+CD RL +G L SLPP R A A FL Sbjct: 625 RLIRTESDRGVLVVCDRRLTATGWGRQLLTSLPPFTRVSQTAEAQAFL 672 >UniRef50_D0LRT5 Helicase c2 n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRT5_HALO1 Length = 729 Score = 608 bits (1569), Expect = e-172, Method: Composition-based stats. Identities = 239/692 (34%), Positives = 360/692 (52%), Gaps = 63/692 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + P G L P ++ R QR MA AV +A+ L+VEAGTGTGKT AYL PAL Sbjct: 13 VERVLGPSGILRACTPHYEDRPEQRHMAHAVAEALAHQGALLVEAGTGTGKTLAYLVPAL 72 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + K+V+ISTG++ALQDQ+ D+P + + L LKG SNY+C+ +L + Sbjct: 73 LSGKRVVISTGTRALQDQITRNDIPLLEEILPRQFTAVTLKGVSNYVCVRKLWDVSARLA 132 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 P + D + W+ + GD + +VA+D+ W +T+T D +G CP ++ CF Sbjct: 133 MAP-EARRDYQTVAEWARDSPTGDRAELTAVADDAPIWAALTNTPDTRIGPRCPFFEQCF 191 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFG-ELIPEADVMIFDEAHQLPDIASQYFG 239 + +AR++A AD+++VNHHLF AD+ ++ S G ++PE + ++FDEAHQL D+ +++FG Sbjct: 192 ITRARRRAEKADLIIVNHHLFFADLSLRSSYPGARVLPEYEAVVFDEAHQLEDVMTEHFG 251 Query: 240 QSLSSRQLLDLAKDITIAYR--------------------------------TELKDTQQ 267 +S+ +L LA+D + + + Sbjct: 252 VQVSTVRLAQLARDARHSSAGRNGPLFPNAQSSEKASDDDDSPKPSTRPMETSTERIIAH 311 Query: 268 LQKCADRLAQSAQD-FRLQLGEPGYRGNLRE-LLANPQIQRAFLLLDDTL---------- 315 L++CA+ S + R G R L + L A+ Q A+ LD L Sbjct: 312 LERCAEGFFISVRAALRESPAGDGGRVPLDDSLFADSDRQEAWFRLDSALDELAAHATLR 371 Query: 316 --ELCYDVAKLSL------------GRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 EL D A+ + R+ L A RA + R L L E ++ + YW Sbjct: 372 ADELASDSAEAAAYAIGEDNPGNADERAEALAAVAVRAEMLRGDLALLAERSERAFVYWG 431 Query: 362 ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AES 419 E + L P+ V+ ++ + + IFTSATL + RLG++ A+ Sbjct: 432 EARATSVGLCAAPVDVSAYLRKYLLPIAPAAIFTSATLRAAGSFDYLRQRLGLDSEIADE 491 Query: 420 LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 L +PSPFDY+RQA+L + R+LP G A + + GR F+L TSH +R+ Sbjct: 492 LAVPSPFDYARQAILYLPRDLPDPRDAGFTAAACARVVELCAITGGRAFVLFTSHRALRE 551 Query: 480 LAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDK 539 A + T+ VL+QG+ + L++QF + A+L+ T +FWEGVDV GD LSLVI+DK Sbjct: 552 AARRLLGTLPHEVLVQGQMPRAALVEQFRARPGAVLLGTGTFWEGVDVPGDALSLVIVDK 611 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LPF DPL++AR++ RGG PF+ Q+P A + LKQG GRLIR +DDRG++ + D Sbjct: 612 LPFAPHTDPLVRARVQRIESRGGAPFEGYQVPQAALALKQGFGRLIRRSDDRGIVAVLDP 671 Query: 600 RLVMRPYGATFLASLP-PAPRTRDIARAVRFL 630 R+V R YG FL +LP RT + + R+ Sbjct: 672 RIVTRRYGRAFLDTLPADITRTSVLEQVRRWW 703 >UniRef50_C8N856 ATP-dependent helicase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N856_9GAMM Length = 662 Score = 605 bits (1559), Expect = e-171, Method: Composition-based stats. Identities = 248/653 (37%), Positives = 345/653 (52%), Gaps = 24/653 (3%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 FA DG LA+A+ ++PR Q+++A AV + L+ EAGTGTGKT+AYL P L + K Sbjct: 8 FAADGALAQAVRDYQPRPGQQELAEAVADNLSDDGILLAEAGTGTGKTFAYLLPLLASGK 67 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 K ++ST ++ LQ+Q++++DLP V K L+ T VALLKGR NYLC Q + Sbjct: 68 KGLVSTATRNLQEQIFTKDLPLVRKVLRSTARVALLKGRRNYLCHHHYHQYLDSEPH-TA 126 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + + + + ++T DGD+ + ED+ +TST +NCLG DC +++CFV +A Sbjct: 127 EEKAWRRAIERFFDKTADGDLVALTEIPEDAPVLARITSTAENCLGRDCAFFEECFVQQA 186 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 R+KA +ADV ++NHHL LAD +K GF E++P+ + DEAH LP A + G LS+ Sbjct: 187 RQKAKEADVTIINHHLLLADFALKSEGFAEILPDIQAFVIDEAHHLPLTAIHFLGDRLSA 246 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGY-RGNLRELLANPQ 303 RQLL D A E D +L++ L L + +P R + +L A+ Sbjct: 247 RQLLGFISDGEAAALAEAPDALELRETLRELKLQHSKILLAVRQPTETRLDEEQLFAHRA 306 Query: 304 IQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQP-------- 355 L EL + R LL R + L ++ Sbjct: 307 FWTELQALAALFELLHIQLAPQKARGKLLAHLDGRCQDLQKLLAAFLAEDRAALPAATEK 366 Query: 356 -------------GYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVN 402 + W + RH+TL P++ A +F +A SW F SATL+VN Sbjct: 367 TGNDAENNDKPPVPRAIWLDVGPRHYTLCSVPVNAAGRFASWIANSNASWAFLSATLAVN 426 Query: 403 DDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEA 462 HF+ LG+ + S+ L SPFD+ QALL LP N L + + P++E Sbjct: 427 GKFDHFSRELGLSEYRSIQLQSPFDFRHQALLYHPPGLPDPNDARYNDALISAILPVLER 486 Query: 463 NNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFW 522 + GR F+L TS+ + R T +L+QG K LL F A+L+ATSSFW Sbjct: 487 SRGRAFLLFTSYKALHAAERALRDT-DYHLLVQGRAGKNILLADFRRHERAVLLATSSFW 545 Query: 523 EGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVG 582 EGVDVRGD L V+IDKLPF +P+DP+ +AR +G PF LP A+ITLKQGVG Sbjct: 546 EGVDVRGDRLVCVVIDKLPFAAPNDPVTRARHRLLEDKGLSPFMHDTLPQAIITLKQGVG 605 Query: 583 RLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 RLIRD+ D GVLV+ D RL + YG TFL SLPP +TR I RF A + Sbjct: 606 RLIRDSGDYGVLVLADPRLTQKNYGQTFLNSLPPMSKTRKIEVIDRFFAYHET 658 >UniRef50_A6C6H8 ATP-dependent helicase, DinG family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C6H8_9PLAN Length = 666 Score = 595 bits (1535), Expect = e-168, Method: Composition-based stats. Identities = 220/656 (33%), Positives = 332/656 (50%), Gaps = 36/656 (5%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA- 62 DG++A+ + ++ R Q +MA AV +AI++ Q L+VEAGTG GK++AYL PA+ A Sbjct: 12 ILGSDGKIAQRLEKYEHRPEQLEMAEAVAKAIDQKQHLLVEAGTGVGKSFAYLVPAILAT 71 Query: 63 -----------KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLER 111 +K++I+ST + +LQ+QL RD+P ++ L + L+KGRSNY+ L R Sbjct: 72 CKQNETRSGKDRKRLIVSTNTISLQEQLIHRDIPFLNAVLPVEFSAVLVKGRSNYISLRR 131 Query: 112 LEQQALAGGDL--PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCL 169 L+ G + LS + + WS++T DG + + W + S + NCL Sbjct: 132 LKGAVERAGSTFSKEEELSQLDQIVQWSHKTTDGSRADL-EFRPIPKIWDEIQSEHGNCL 190 Query: 170 GSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQ 229 G C Y DCF +AR++ +ADV+VVNH LF +D+ ++ G ++P+ D +I DEAH Sbjct: 191 GKRCATYNDCFYYRARRRVWNADVLVVNHALFFSDLAIRREG-SSILPDYDTVILDEAHT 249 Query: 230 LPDIASQYFGQSLSSRQLLDLAK-------DITIAYRTELKDTQQLQKCADRLAQSAQDF 282 + +A + G S+++ Q L + L D QQ + + D Sbjct: 250 IEAVAGDHLGLSITNSQFDYLFNKLYNDRTQKGLLLHHNLVDCQQHVTRLRFMVEDLFDH 309 Query: 283 RLQLGEPGYRGN--LRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERAT 340 L+ + N +R+L + L Y + L AA ER T Sbjct: 310 LLEWQDSSGLANRRIRQLPPIENCVSQEMRLLAARIAEYAFTLKNEEEKIELSAAAERCT 369 Query: 341 LYRTRL-KRLKEINQPGYSYWYECTS---RHFTLALTPLSVADKFKELMAQKPGSWIFTS 396 L L + + YW E T + + P+ V ++ + + + I TS Sbjct: 370 ALGDSLNSWLTQQAEADSVYWVEATRGRHQRVKMVNAPVDVGPVLRDELFNQAQTVILTS 429 Query: 397 ATLSVND-DLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQ--PGSARQLA 453 ATL+V D D SRLG+ Q+E L L SPF+Y Q L + +P + +A Sbjct: 430 ATLAVGDQDFSFTRSRLGLTQSEELKLGSPFNYQEQVRLILPAAMPDPGENPAAYEAAVA 489 Query: 454 AMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQGET-SKGQLLQQFVS 509 L+ IE +G F L TS+ MM+ A++ + L + LQG+ + +L++F + Sbjct: 490 EKLKQYIEQTDGHAFALFTSYKMMQQCADRISGWLSEHNLALYLQGDGLPRSLMLERFRN 549 Query: 510 AGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQ 569 +L T SFW+G+DV GD L+ VII KLPF+ PD PLL+AR+E R RGG+PF + Q Sbjct: 550 NPRGVLFGTDSFWQGIDVPGDALTNVIITKLPFSVPDHPLLEARVEAIRNRGGNPFMDYQ 609 Query: 570 LPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIAR 625 +P+A+I LKQG GRLIR A D G +VI D R+ + YG FL SLP D Sbjct: 610 IPEAIIKLKQGFGRLIRTASDYGQVVILDPRVRTKRYGEKFLESLPDCTLIIDEQD 665 >UniRef50_B1XY97 Helicase c2 n=2 Tax=Burkholderiales Genera incertae sedis RepID=B1XY97_LEPCP Length = 658 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 246/635 (38%), Positives = 348/635 (54%), Gaps = 8/635 (1%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 FA G LA+ F+PRE Q ++A AV A+E+ LV EAGTG GKTYAYL P L + Sbjct: 15 FAATGVLARTEKQFRPREVQTRLADAVAHALEERSVLVAEAGTGVGKTYAYLVPLLLSGL 74 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 + ++ST +K+LQDQLY RDLP + + L VALLKGR++YLCL RL+ Sbjct: 75 RALVSTATKSLQDQLYLRDLPRLVQLLGLPVQVALLKGRASYLCLHRLDHARHTAELPDR 134 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 L + + WS T GD++ + E S PLVTS +NCLGSDCP ++ C +V+A Sbjct: 135 HSLRVLARVEQWSKTTRSGDLAELEVLDERSPVIPLVTSNRENCLGSDCPQFRQCHLVQA 194 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 R++AM AD+VVVNHHLF ADM ++++G EL+P D ++FDEAHQL + Q+ G+ + + Sbjct: 195 RREAMQADIVVVNHHLFFADMALRDTGMAELLPSVDAVVFDEAHQLNEAGVQFLGRHIGT 254 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLG---EPGYRGNLRELLAN 301 QLLD+ +D+ A + Q Q A + Q A+ RL R E + Sbjct: 255 GQLLDIGRDLLAAGLAHARGLQDWQALAGAVEQGARRLRLACAGTLRAAGRLRWDERGLS 314 Query: 302 PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 A D + + L ERA +L + G+ W Sbjct: 315 EDFVAALTDARAACVAASDALGVVADAAPDLAKLQERAQALAAQLAAFLGPVEHGHVRWI 374 Query: 362 ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL 421 + T LA +PL + + +E + + +WIFTSATL + L FT G+E A +L Sbjct: 375 DLTLHQARLAESPLDIRETLREQIEGERRAWIFTSATLGDDPALSWFTRSAGVEDAHTLR 434 Query: 422 LPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 SPFDY R A L V P+ ++ ++ + +A GRCF+L T+ ++ + Sbjct: 435 AGSPFDYGRNARLFVPARFPRPSEATHPAAVSQLAARCAQALGGRCFVLTTTLRALQGIG 494 Query: 482 EQFRATM-----TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 RA + + VL+QGE K L+ +F++ A+LV + SFWEG+DV G L V+ Sbjct: 495 ADLRARLATLPDPIDVLVQGEAPKRALMARFLATPRAVLVGSHSFWEGIDVPGSALQCVL 554 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 IDKLPF P+DPL +AR +GG PFD+ +P+A + LKQG GRLIR DRG+LVI Sbjct: 555 IDKLPFPPPNDPLAEARCRSLEAQGGKPFDDYFIPEAAVALKQGAGRLIRSETDRGLLVI 614 Query: 597 CDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 CD RL+ YG + +LPP P D A A+++LA Sbjct: 615 CDTRLLTMNYGRRLMGALPPMPLVGDEAEALQWLA 649 >UniRef50_C1ZB20 DNA helicase, Rad3 n=3 Tax=Planctomycetaceae RepID=C1ZB20_PLALI Length = 659 Score = 590 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 227/654 (34%), Positives = 329/654 (50%), Gaps = 37/654 (5%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 + +G LA+ +P ++ R Q +MA AVT AI G+ LVVEAGTGTGK+YAYL PA+ Sbjct: 6 ENVLGQEGLLARRLPHYEVRGEQLEMARAVTAAIAAGEHLVVEAGTGTGKSYAYLVPAIL 65 Query: 62 A-------------KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLC 108 A K++VIIST + +LQ+QL SRDLP ++ L + L+KGRSNY+ Sbjct: 66 AATANQGSTVDGGAKRRVIISTHTISLQEQLISRDLPLLNSILPVEFSAVLVKGRSNYVS 125 Query: 109 LERLEQQALAGGDL--PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 L RL+ L + V L W+ +T DG +++ Q W V S + Sbjct: 126 LRRLKGALEKSRSLFPTSEAEDQVRSLAGWARETNDGSLASL-DFKPLPQVWDEVRSEHG 184 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDE 226 NCLG +CP Y DC KAR++ +ADV++VNH LF AD+ ++ G ++P+ ++FDE Sbjct: 185 NCLGKNCPTYSDCHYYKARRRVWNADVLIVNHALFCADLALRREG-ASVLPDYQTVVFDE 243 Query: 227 AHQLPDIASQYFGQSLSSRQLLDLAKDIT--------IAYRTELKDTQQLQKCADRLAQS 278 AH L +A+ + G +SS Q+ + + IA + + + + Sbjct: 244 AHTLEQVAADHLGLGISSGQIEYMLNRLFNEKTQKGLIAGYPLEPQRALITRLKHDVYEF 303 Query: 279 AQDFRLQLGEPGYR-GNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFE 337 + R ++ + G G +RE LA L T Y L +A E Sbjct: 304 FDEIRHRVHDHGPANGRVREPLAIENTLSGDLRKLATSLAEYAAKLKQEEEKIELVSASE 363 Query: 338 RATLYRTRLKRLKEINQPGYSYWYECTSRH----FTLALTPLSVADKFKELMAQKPGSWI 393 R + + E + YW E T L +P+ V +E + K + I Sbjct: 364 RLISLAGSISQWVEQGRGDSVYWVETTGAQRNLKVKLCCSPIEVGSVLREELFNKVPTVI 423 Query: 394 FTSATLSVND-DLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQP--GSAR 450 TSATL+V SRLG+ +++SL L SPF+Y Q L + +P Sbjct: 424 LTSATLAVGQQSFDFIRSRLGLTRSQSLRLGSPFNYREQMKLVLPDGMPDPTDSPADFEF 483 Query: 451 QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA---TMTLPVLLQ-GETSKGQLLQQ 506 + ++ + +GR F+L TS+ M++ + + Q GE + Q+L++ Sbjct: 484 AVCEKIQEYVSQTSGRAFVLFTSYKMLQSCERRLTNWLIRKNFSLYSQSGELPRSQMLER 543 Query: 507 FVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD 566 F A+L T SFW+GVDV GD L VII KLPF+ PD PLL+AR+E R RGG+PF Sbjct: 544 FRKDPAAVLFGTDSFWQGVDVPGDALQNVIITKLPFSVPDHPLLEARVEAIRARGGNPFM 603 Query: 567 EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 E Q+P+A I LKQG GRLIR DRG++VI D R+ +PYG FL SLP Sbjct: 604 EYQVPEAAIKLKQGFGRLIRTKTDRGMVVILDPRIRTKPYGRVFLESLPECRIV 657 >UniRef50_Q0F3T0 ATP-dependent helicase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3T0_9PROT Length = 620 Score = 588 bits (1516), Expect = e-166, Method: Composition-based stats. Identities = 223/636 (35%), Positives = 343/636 (53%), Gaps = 24/636 (3%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 ++ DF G L + +PG+ RE Q ++A + I G L+ EA TGTGKT AYL PAL Sbjct: 8 VSRDFERGGLLDEQLPGYGRREEQIKLAGEIAGCIVSGSRLLAEAETGTGKTLAYLIPAL 67 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 R+ KV+IST +++LQDQL RDLP V KAL VALLKGRSNYLC +RL+ + Sbjct: 68 RSSDKVLISTHTRSLQDQLVHRDLPAVQKALGAKRRVALLKGRSNYLCPQRLKTHI-SSP 126 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + + ++ + WS +T DGD++ ++T+T D C GS C ++ C Sbjct: 127 QVELWAQKTMLKVLDWSRKTQDGDLAALPFDPFAKGIGAMITATADQCAGSKCAEFEHCP 186 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 ++KAR+KA AD+VV NH L LAD +K FGE++P DV + DEAH LP +A Q+FG Sbjct: 187 LMKARQKAQGADIVVTNHSLLLADAALKSGDFGEVLPAFDVYVLDEAHSLPQLAGQHFGI 246 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 L+ + D+ + + ++ ++ Sbjct: 247 QLTRMNFIQWLNDMQAELEAMGDEPALKKDIVEQ---------------------GRVVL 285 Query: 301 NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 ++ L++ ++ L RS L ERA + +K+ G+ W Sbjct: 286 EAWLESGLEALEEAWGDMLKLSDLRRERSEPLTRLAERAEQLAEEIAMVKKPGD-GFVGW 344 Query: 361 YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL 420 E + P+ + + + ++I SATL V+ + +RLG+ AE Sbjct: 345 SEGEGELTRYTVAPVETGPVLAKHLWSRQAAFILLSATLRVSGSFDYARNRLGLADAEEC 404 Query: 421 LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL 480 PSPFDY++QA++ + R++P + PG+ + + ++ A+ GR F+L T+ +M++ + Sbjct: 405 FHPSPFDYAQQAMIYLPRHMPDSRSPGAVATMTDEIETLLRASRGRAFVLFTAWSMLKQV 464 Query: 481 AEQFRATMTLPVLLQGET-SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDK 539 A + + VL+QGE+ S+ +L F + +++L T SFWEGVDV G++LS+VIIDK Sbjct: 465 APELARRLPWDVLIQGESGSRDAILDAFRADTHSVLCGTRSFWEGVDVPGESLSMVIIDK 524 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 +PF P+DPLL+AR+ C +GG F ++QLP+A+ TL+QG GRLIR DDRGV+ + D+ Sbjct: 525 MPFAPPNDPLLQARIRRCEEQGGSGFRDIQLPEAIATLRQGAGRLIRSEDDRGVMALLDS 584 Query: 600 RLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 RL + YG + +LPPAP D+A F S Sbjct: 585 RLYHKAYGREAVHNLPPAPIRDDLADVRWFFEEASE 620 >UniRef50_A9GFB8 ATP-dependent helicase n=2 Tax=Myxococcales RepID=A9GFB8_SORC5 Length = 697 Score = 586 bits (1510), Expect = e-165, Method: Composition-based stats. Identities = 229/669 (34%), Positives = 339/669 (50%), Gaps = 48/669 (7%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 P G A+ + G++ R+ Q MA AV +A+ + + L+ EAGTGTGKT AYL PA+ + + Sbjct: 10 LGPSGPFARGLDGYEDRQGQVAMASAVERALAEDRILLCEAGTGTGKTLAYLVPAILSGR 69 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 KV++ST +KAL+DQ+Y++DLP V++ L+ AL+KG NYLCL R + + G Sbjct: 70 KVVVSTATKALEDQIYTKDLPLVAEHLRLDPRAALVKGLGNYLCLRRFSELRTSPGAGAG 129 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + L+ +W+ +T GD++ +AE W V S+++ LG+ C ++ CFV + Sbjct: 130 IAGRSLPLIEAWAQETEMGDVAELAHLAEGDPLWREVASSSETRLGASCEYFERCFVTRM 189 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESG------FGELIPEADVMIFDEAHQLPDIASQYF 238 ++ + A ++VVNHHLF AD+ +K +G +P D +IFDEAHQL DIA+ +F Sbjct: 190 KRDSEAARLLVVNHHLFFADLALKMAGARRGFAGAGALPPYDAVIFDEAHQLEDIATGFF 249 Query: 239 GQSLSSRQLLDLAKDITIAYRTE-LKD-----------TQQLQKCADRLAQSAQDFRLQL 286 G +S ++ + +D A+ L D T +++ AD L Sbjct: 250 GVRVSRARVDSMLRDADRAFIASGLADRILGRGEGTAITAVVRESADALFDRLASLGGAA 309 Query: 287 GEPGY---RGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYR 343 G R L + ++ A+ LDD LE + S + RA R Sbjct: 310 GGGDRGEARSPLARDAWSGELLDAYHRLDDHLEALA-AYASANAISEAVQLVGNRAAQLR 368 Query: 344 TRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVND 403 R+ + W E R + +P+ + D +E + ++ G+ + TSATL+ Sbjct: 369 DDAARIVDPAT-NQVTWVEVRGRAVSFGASPVDLGDMLREHVFERIGAVVLTSATLTTGG 427 Query: 404 D----LHHFTSRLGIEQ-----AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAA 454 SR+G+++ + L +PSPFDY ALL R+LP+ + A Sbjct: 428 SAGAGFRFLRSRMGLDEDVSVPVDELEVPSPFDYPTAALLYTPRDLPEATDAAFVERAAD 487 Query: 455 MLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTL----------------PVLLQGET 498 +I G F+LCTS M LA R + P+L+QG+ Sbjct: 488 RAAELIGITGGGAFLLCTSIRAMNALAAALRVRLGRAAAVARADGGAPGRQAPLLVQGDA 547 Query: 499 SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCR 558 KG LL++F + +A+LVAT SFWEGVDV G+ L LVII+KLPF P DP++ AR Sbjct: 548 PKGALLRRFRAERHAVLVATMSFWEGVDVPGEALRLVIIEKLPFAVPTDPVVAARCTAIE 607 Query: 559 LRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 GG+PF +P A ITLKQG GRLIR DRG++ I D R+ R YG L SLP A Sbjct: 608 QGGGNPFIAYSVPQAAITLKQGFGRLIRARTDRGIVAILDRRIRTRGYGRVLLDSLPDAR 667 Query: 619 RTRDIARAV 627 RT I Sbjct: 668 RTDRIEDVR 676 >UniRef50_A5EVG8 Helicase domain protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVG8_DICNV Length = 645 Score = 585 bits (1509), Expect = e-165, Method: Composition-based stats. Identities = 240/643 (37%), Positives = 331/643 (51%), Gaps = 12/643 (1%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + F+ G L+ A+ G++ R+ Q +A + + IE+ L EAGTG GKT+AYL P L Sbjct: 4 LDSFFSEQGALSSALKGYQVRKEQVHLAETIARQIERKSVLCAEAGTGIGKTFAYLFPLL 63 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + KK +IST +K LQ+Q++ D+P V K L + +ALLKGR NYLC ER E A Sbjct: 64 LSAKKALISTATKTLQEQIFYHDIPFVQKILGNSRKIALLKGRRNYLCYERYEHLAHKPP 123 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 Q L+ ++ ++ DGD++ + E+ V+ T + CL +DCP + CF Sbjct: 124 Q-NAQEQKYRQLIDDFAVRSKDGDLAQL-DIPENHDILRAVSCTAEQCLNADCPFFAQCF 181 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 V KAR+KA DAD++VVNH+L LAD+V+K GF E++PE + I DEAH LP I + G Sbjct: 182 VQKARQKAKDADLIVVNHYLLLADLVLKNDGFAEILPEIETFIIDEAHHLPTITRHFSGI 241 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYR-GNLRELL 299 +LS RQ K+ A D L+ Q F L R + +L Sbjct: 242 TLSQRQCHLWLKEFDEAVIEHAPDALTLRHAIKTAQNVMQQFPSSLQIYDERILEMPDLQ 301 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359 A+ L + L R+A+L R L + S Sbjct: 302 AHHDFWEIIAAWQQALMKLLSALQPQLPRAAVLHTFERRLETALNSLDEFLALKDANESS 361 Query: 360 -------WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL 412 W E ++H L P++ A +F + + +W F SATL++N HF L Sbjct: 362 PETPEAKWVEVRAQHLVLNRVPVNAALQFGTWIERSDAAWCFLSATLTINQSFTHFCHEL 421 Query: 413 GIEQA-ESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLC 471 G+ + E+L SPFDY +QAL+ LP N P A + PI+ + GR F+L Sbjct: 422 GLNASVETLYCASPFDYPKQALMYQPPQLPNPNHPQYTESFIAAVLPILRRSQGRSFLLF 481 Query: 472 TSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDT 531 TS+ ++ +AE+ A + +QG K +LL F NALL+AT+SFWEGVDVRG Sbjct: 482 TSYRALK-IAEKLLANEEFALFVQGSAPKTKLLADFCQTPNALLLATASFWEGVDVRGKQ 540 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 L V+IDKLPF +PDDP+ + R +G PF LP AVI+LKQGVGRLIRD D Sbjct: 541 LVCVMIDKLPFAAPDDPVSRERHRLLEEQGLSPFMYDTLPQAVISLKQGVGRLIRDQKDY 600 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPS 634 GVLVI D RL + YG FL SLP RT + RF Sbjct: 601 GVLVIGDPRLRQKSYGKIFLESLPRMTRTSKLDIVYRFFNYHE 643 >UniRef50_C9YB00 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YB00_9BURK Length = 667 Score = 585 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 251/640 (39%), Positives = 354/640 (55%), Gaps = 19/640 (2%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + F+P G LA A+ + PR+ Q+ MA AV I+ G LVVEAGTG GKT+AYL PAL Sbjct: 9 VAEVFSPRGLLAGAVAEYLPRKGQQDMAAAVAGNIQDGGVLVVEAGTGVGKTFAYLVPAL 68 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + +KV++ST +KALQDQL++RD+P + + LK VALLKGRS+Y+CL RL +G Sbjct: 69 LSGQKVLLSTATKALQDQLFTRDIPELLEILKIPVRVALLKGRSSYVCLHRLANARHSGI 128 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 L + + SW T GD+S ++ E Q PLVTST +NC S CP Y++C Sbjct: 129 LQSAAPLRLLGQVESWVTATRTGDVSEVPALEESQQLLPLVTSTRENCTTSKCPRYQECH 188 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 + KAR+ AM ADVVV+NHHLF AD V+ESG EL+P + ++FDEAHQL DI Q+ G+ Sbjct: 189 LYKARRDAMAADVVVINHHLFFADSNVRESGVAELLPTVNAVVFDEAHQLNDIGVQFLGR 248 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPG-------YRG 293 S+ QLL+L +D+ + Q ++L + D +L E ++ Sbjct: 249 QWSTLQLLNLGRDVVFVCLQWARGMANWQLLVEQLEMAVVDMQLVCQESAANTPRLPWQA 308 Query: 294 NLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEIN 353 + E L+ +R L + L A ERA++ + L R Sbjct: 309 LVPEGLSPGLWERRLRRLLQAHATLLQALQGVADAHPELAALAERASVLKDHLDRAALPA 368 Query: 354 QPGYSYWYECTSRHFTLALTPLSVADKFKELM-----AQKPGSWIFTSATLSVNDDLHHF 408 + G W + +R +P+ ++D + + A SW FTSATL DL F Sbjct: 369 EDGLIRWMDNGTR-LRFVESPMDISDAMRSKVTGALEAGSRVSWTFTSATLGPGSDLAWF 427 Query: 409 TSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCF 468 + G+ A L + SPF+Y QA L V +P + P ++AA+ E GR Sbjct: 428 VNSAGLHGANVLKVESPFNYEHQAALYVPGAIPAPSHPNHGTRVAALAAEGAEILGGRTM 487 Query: 469 MLCTSHAMMRDLAE----QFRATMTLPVLLQGETSKGQLLQQFVSAG--NALLVATSSFW 522 +L T+ MR + E + + VL+QGE+SK +LL++F +LVA++SFW Sbjct: 488 VLTTTLRAMRLIGETIRKLLPPHLDMAVLVQGESSKRELLERFQQREGLGCVLVASASFW 547 Query: 523 EGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVG 582 EGVD+ G +L L++IDK+PF PDDPLL+AR + GG F+EVQLP A + L+QGVG Sbjct: 548 EGVDIPGRSLLLLLIDKIPFAPPDDPLLQARCKQVDEAGGSSFNEVQLPMAAVALRQGVG 607 Query: 583 RLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD 622 RLIR DRGVLV+CD RL YG L++LP +D Sbjct: 608 RLIRRESDRGVLVVCDVRLRSMGYGRKLLSALPVMRIVKD 647 >UniRef50_D1AJB0 Helicase c2 n=5 Tax=Fusobacteriaceae RepID=D1AJB0_SEBTE Length = 832 Score = 581 bits (1498), Expect = e-164, Method: Composition-based stats. Identities = 194/688 (28%), Positives = 317/688 (46%), Gaps = 69/688 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + F G + K P F+ R+ Q +M+ + +++ + + ++EAGTGTGKT AYL P Sbjct: 119 IDKYFGDLGIIRKKYPDFEIRDEQYKMSKDIEKSLNENKKALIEAGTGTGKTLAYLIPTL 178 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 AL K IIST + LQ+QL ++D+P V + + L+KGR NYLC +L+ Sbjct: 179 EYALENNLKAIISTNTINLQEQLINKDIPLVKELIGQDFKYTLVKGRGNYLCKRKLQNAI 238 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 + D + ++ L+ W+ T GD + + W V D C CP + Sbjct: 239 MEESD-DSEDKEILLNLQKWNETTKYGDRNELRYGI-SFEIWEKVNCELDLCTNVKCPYF 296 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG----ELIPEADVMIFDEAHQLPD 232 C+ ARK+ +D++V+NHH+F AD+ ++ ++P D++IFDEAH + D Sbjct: 297 SSCYFFNARKEIGKSDLLVLNHHMFFADLSIRSEIGFNTDYSILPNYDILIFDEAHNIED 356 Query: 233 IASQYFGQSLSSRQLLDL------------------------AKDITIAYRTELKD---- 264 A YF +S L KD E+ D Sbjct: 357 TARSYFTSEVSKYSFGKLMGNIYNKRVRNYNKSGIFVRALIYLKDNLSEEEYEIIDKVKE 416 Query: 265 ---TQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFL------------ 309 + L K D++ + F L + + +++ I+ + L Sbjct: 417 EEIIENLNKYYDKIIEIFDRFLLGFSKDSEQMEIKKRFDKDYIKSSSLWKEIMKLRKESV 476 Query: 310 -----LLDDTLELCYDVAKLSLGRSALL----DAAFERATLYRTRLKRLKEINQPGYSYW 360 ++ +L ++ K L + ER ++ L + + +Q + YW Sbjct: 477 HLYSIMIKGLTKLTNEIDKFRLEDENGIIFDFKKYIERVKVFMKDLLYILDSDQEDHVYW 536 Query: 361 --YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE 418 + TP VAD + + K +FTSATL+V ++ +G+E+ Sbjct: 537 TNINLRKGSIRIYATPFEVADDLEHNLFNKMDRILFTSATLAVEQKFDYYKKNIGLEKKG 596 Query: 419 SL--LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 + ++ SPFDY +Q + + + N + ++ ++ GRCF+L TS++ Sbjct: 597 IIEEIIDSPFDYEKQMKVYIPDDTKDPNSLEFFSDVYDFIKKLVINTKGRCFLLFTSYSS 656 Query: 477 MRDLAEQFR---ATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLS 533 + + + R M +L QGE + ++++ F A+L T SFWEG+DV+GD+L Sbjct: 657 LNFIYNKIRGELEKMGYTLLKQGELPRHEMIELFKIRDKAILFGTDSFWEGIDVQGDSLK 716 Query: 534 LVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGV 593 V+I KLPF SP+DP+ +A +E R +PF Q+P AVI KQGVGRLIR D G+ Sbjct: 717 SVVIVKLPFKSPEDPVTEAIIEYMRKNNQNPFMNYQIPQAVIKFKQGVGRLIRSKTDTGI 776 Query: 594 LVICDNRLVMRPYGATFLASLPPAPRTR 621 + I DNR++ + YG FL SLP R Sbjct: 777 VTILDNRVIKKAYGEKFLKSLPKTSIIR 804 >UniRef50_C8W6D5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W6D5_DESAS Length = 957 Score = 580 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 195/681 (28%), Positives = 331/681 (48%), Gaps = 70/681 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + D P+G+LAK P ++ R Q QM+VAV Q + K L+ EAGTGTGK+ AYL PA+ Sbjct: 252 VVDILGPEGELAKQHPHYEHRPQQLQMSVAVAQTLNKQSLLLTEAGTGTGKSMAYLVPAV 311 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 + +++V++ST + LQ+QL+ +D+P + + + AL+KGR NYLCL R + Sbjct: 312 LWSAQNRERVVVSTHTINLQEQLWFKDIPMLQQMFGKSFRAALVKGRQNYLCLSRWSEVF 371 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 + + + W +T GD S + W +++ +D C G+ C + Sbjct: 372 SSTDNHSRWEALFYSRILVWLTKTQTGDRSEINLNGAEYDYWSKISADSDRCKGNQCHWF 431 Query: 177 KD-CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIAS 235 + CFV +A+K A ++D++++NH L +D+ V+ ++P ++ DEAH L ++A+ Sbjct: 432 QKACFVSRAKKTAENSDLIIINHSLLCSDLQVENR----ILPSYGPLVIDEAHHLENVAT 487 Query: 236 QYFGQSLSSRQLLDLAK----------------------DITIAYRTELKDTQQLQKCAD 273 ++FG +S + + A R ++D + Sbjct: 488 EHFGYMISESSIKRWLESTDKLAIKLSHNPAAEANNNFDQKIYAVRKSVEDIRHASGVYF 547 Query: 274 RLAQSAQDFRLQLGEPGYRGNLRE------LLANPQIQRAFLLLDDTL----ELCYDVAK 323 L ++ EP N L Q L+ +D L ++ D K Sbjct: 548 NLLRTEHSINDYAEEPVEAANQNAGGLCVSRLYKEAGQEQLLVEEDNLLTGFKILMDNLK 607 Query: 324 LSLGRSALLDAAFERA--------------TLYRTRLKRLKEINQPGYSYWYECT----S 365 + + + A +E+ T ++ + + P + YW E + Sbjct: 608 KIMLKLEIWAAQYEKWVNTAKIFSLHLNLGTQLFASIEFILTHSDPNFVYWMEKNYFQSN 667 Query: 366 RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI----EQAESLL 421 + TL +P+ + E + + I TSATLS+ +F R+G+ E+ L Sbjct: 668 TYITLRSSPIDIGKLLYEKLFASKKAVILTSATLSIAGSFDYFKERVGLNLYTEEISELQ 727 Query: 422 LPSPFDYSRQALLCVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 + SPF+Y +QA L + +LP N+ +LA ++ ++ + G+ +L TSH ++ Sbjct: 728 IDSPFNYGKQAKLFLTSDLPSQNEVPEQFYHTELANIIEKLVNVSQGKTLVLFTSHRSLK 787 Query: 479 DLAEQFRATM-TLPVLLQG---ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSL 534 + + + +LL G + S+ L+++FV A+L T+SFWEG+D+ GD+LS Sbjct: 788 QTYLRLKPVLEDKEILLLGHNIDGSRSALIEEFVRNKKAVLFGTASFWEGIDIPGDSLSS 847 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 VII KLPF +P P+++AR+E +G + F E LP AVI KQG GRLIR + D G + Sbjct: 848 VIIVKLPFWAPSIPIIEARLESLIKQGKNGFWEFSLPQAVIRFKQGFGRLIRSSRDYGAV 907 Query: 595 VICDNRLVMRPYGATFLASLP 615 ++ D R++ + YG FL SLP Sbjct: 908 IVLDKRIIQKKYGRYFLNSLP 928 >UniRef50_B4D6W3 Helicase c2 n=2 Tax=Verrucomicrobia RepID=B4D6W3_9BACT Length = 661 Score = 578 bits (1491), Expect = e-163, Method: Composition-based stats. Identities = 218/643 (33%), Positives = 319/643 (49%), Gaps = 27/643 (4%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA- 59 + + F+ G LAKA F+ R Q++MAV+V A+ + + +V+EAGTG GK+ AYL PA Sbjct: 17 VREIFSETGMLAKA-KNFEYRREQQEMAVSVATALSEQRHVVIEAGTGVGKSLAYLVPAV 75 Query: 60 ---LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 L KKK ++ST + LQ+QL +D+P V K L L KGR+NY+C RLE+ Sbjct: 76 LWALEHKKKAVVSTYTINLQEQLVYKDIPIVQKVLPVEFEAMLWKGRANYICPLRLERAI 135 Query: 117 LAGGDL-PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 +L +++ + W+ T DG +S SV DS W V S C C Sbjct: 136 AHAQELFTSPEQAELQRIWEWAQTTQDGTLSD-FSVEPDSSVWAQVCSEQHICTTKSCGN 194 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADM---VVKESGFGELIPEADVMIFDEAHQLPD 232 CF +ARK+ + ADVVV+NH LF ++ +E + D +IFDEAH + Sbjct: 195 NPKCFYQRARKRLLTADVVVMNHTLFFLNLGGIAEQEENESGYLFANDFVIFDEAHTVEQ 254 Query: 233 IASQYFGQSLS----SRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE 288 +A++ G +S L L T ++ K L + F +LGE Sbjct: 255 VAAKQIGLGVSQYGLRYALQRLYNPKTKKGLFQVHRNPNAVKETATLIEEVDSFFDKLGE 314 Query: 289 PGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAF-----ERATLYR 343 G RE L +L V + G L A R R Sbjct: 315 RGDFKKGREYRVRQPDIVMDSLTAPLAKLQQMVVETLRGIEDDLGKAELQDLGRRIRDAR 374 Query: 344 TRLKRLKEINQPGYSYWYECTSR---HFTLALTPLSVADKFKELMAQKPGSWIFTSATLS 400 + + + + YW E T + + L P+ VA + L+ + I TSATLS Sbjct: 375 SAIATFLKQEAEDHVYWIEKTGKTQQYHALHAAPVDVAAYLRALLFPEGKCCIMTSATLS 434 Query: 401 VNDD-LHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPI 459 V ++ L +F +R+G ++ E+ + SPFDY RQ + V R +P G LA + Sbjct: 435 VGNEALTYFRNRVGADEVEARQIGSPFDYERQMKIYVTRKMPDPRDSGYEAALAEQIEHF 494 Query: 460 IEANNGRCFMLCTSHAMMRDLAEQFRATMT---LPVLLQGET-SKGQLLQQFVSAGNALL 515 + + GR F+L TS+ M +LA R + +L+QGE + +L+ +F +L Sbjct: 495 VGMSKGRAFVLFTSYKAMTNLASALRERLDDLDYKLLVQGEGLPRHRLISEFKKDERHVL 554 Query: 516 VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVI 575 T SFW GVDV G+ LS VII +LPF PD PL++AR+E GGD F E LP+A++ Sbjct: 555 FGTESFWSGVDVPGEALSNVIITRLPFAVPDHPLIEARLELIEANGGDAFAEYSLPEAIL 614 Query: 576 TLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 L+QGVGRLIR D+G++VI DNR++ + YG F+ +LP P Sbjct: 615 KLRQGVGRLIRTKQDQGIVVILDNRVLTKSYGQAFMRALPKCP 657 >UniRef50_B2A1E9 Helicase c2 n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1E9_NATTJ Length = 636 Score = 578 bits (1490), Expect = e-163, Method: Composition-based stats. Identities = 206/621 (33%), Positives = 337/621 (54%), Gaps = 14/621 (2%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK---KVI 67 L I F+ RE Q M++ V +A++ G VVEAGTGTGK+ AYL PA++ + +++ Sbjct: 15 LQHHIDKFETREGQIDMSLGVLKALQDGGHFVVEAGTGTGKSLAYLLPAVQLAQDEFRMV 74 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 IST + ALQ+QL +D+P V K + T V ++KGRSNYLC ++ Q G V + Sbjct: 75 ISTATIALQEQLLQKDIPLVEKIIGRTLRVEVIKGRSNYLCKQKFNQH--FGQTSFVNSI 132 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 + L+ W N+T GD + ++ E W V S +++CL C Y +CFVVK RK+ Sbjct: 133 QERELI-EWVNETETGDRNELQTMPE---IWEKVCSQSESCLAMRCQFYSECFVVKLRKR 188 Query: 188 AMDADVVVVNHHLFLADMVVK--ESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSR 245 A A+++V NHHL+ +D+ ++ G + P+ + +IFDEAH +PD A++ G+ + Sbjct: 189 AETAELLVTNHHLYFSDLNLRIDSDGSMSIFPDYEGVIFDEAHHIPDTATKSLGREVKYS 248 Query: 246 QLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQ 305 +++ L K++T + + + L + A+ A A + E Y LREL + ++ Sbjct: 249 RVIKLFKEVTSYLKQKFQAQVNLVQEAEASAVKAFNKLSDFRESDYL--LRELDSFISLK 306 Query: 306 RAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTS 365 L + + A + R R + L + ++ + Y W S Sbjct: 307 EFRKKLSKLAQHVEECALEEMDRPEQPRMLASRLNKTKLDLDLILDLEEEDYISWVNQQS 366 Query: 366 RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPS 424 +L+ P+ V + +E + I TSATLS+N +F +R+G+ A++ + S Sbjct: 367 SDISLSTNPVFVHKQLREFLFDNVDRIIMTSATLSINGKFAYFKNRVGLSQDAQTYQIES 426 Query: 425 PFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF 484 PF+Y Q+ + + +N P+ RQLA + II+A GR +L TS++ + + Q Sbjct: 427 PFNYQEQSNIYIPKNFPEPRSGEYNRQLADTIEQIIDAAGGRTLVLFTSYSTLNSIYNQL 486 Query: 485 RATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTS 544 + + + QG K ++L F + +++L+AT+SF EGVDV G +L +VI+DKLPF Sbjct: 487 KDKVPYEIYCQGIHPKNKILSWFQNDASSVLMATNSFREGVDVPGSSLQVVIMDKLPFAV 546 Query: 545 PDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMR 604 PD+PL+KA++E + G + F QLP+AV+ +KQG GRLIR +D G+ + D R+ + Sbjct: 547 PDNPLIKAKIEKLQQEGQNSFMNYQLPEAVLAVKQGFGRLIRHNNDCGIFALLDPRVFTK 606 Query: 605 PYGATFLASLPPAPRTRDIAR 625 YG F+ SLP AP + + Sbjct: 607 SYGRHFINSLPNAPLISNWSE 627 >UniRef50_C3WBH3 ATP-dependent helicase DinG n=2 Tax=Fusobacterium RepID=C3WBH3_FUSMR Length = 823 Score = 575 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 185/700 (26%), Positives = 329/700 (47%), Gaps = 73/700 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + F G L++A GF+ R+ Q MA + + + P++VEAGTGTGKT AYL P Sbjct: 122 IAPYFEKTGLLSQAFKGFEYRDEQLHMATHIEKGLNSETPVIVEAGTGTGKTLAYLIPSI 181 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 A++ KK+V+IST + LQ+QL ++D+P + ++ L+KGR NYLC + Sbjct: 182 EWAIKNKKRVVISTNTINLQEQLLNKDIPIAKRVIQGDFKYILVKGRGNYLCNRKYHNVV 241 Query: 117 LAGG----DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD 172 + DL + + W NQT GD + D+ W L S D C G+ Sbjct: 242 MGDKSLLEDLTTSQKNQFAEIIKWGNQTETGDKAELT-FEADNTIWELFQSETDMCSGNK 300 Query: 173 CPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG----ELIPEADVMIFDEAH 228 CP +CF +K+R + AD+++ NHH++ +D+ +++ ++PE +++FDEAH Sbjct: 301 CPYKNECFFLKSRDEKKKADILITNHHMYFSDLAIRKEIGFNTEYSILPEYGLVVFDEAH 360 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTEL------------------------KD 264 + +A YF S I I + ++ Sbjct: 361 NIEKVARDYFSYEASKYSFTKTMNQIFITEGKKKNTGALDSVLKHIKSEELDNHGILERE 420 Query: 265 TQQLQKCADRLAQSAQDFRL---------QLGEPGYRGNLRELLANPQIQRAFLLLDDTL 315 ++++ L + +++ ++G +R E+ +P + D L Sbjct: 421 IEEIKLKHKSLYIAGREYFNHIIEVFSKGEMGTFTFRARKEEIENSPFLNTLNDFKDKFL 480 Query: 316 ----------ELCYDVAKLSLGRSALLD---AAFERATLYRTRLKRLKEINQPGYSYWYE 362 K R+ ++ +R + + + + + + YW E Sbjct: 481 SEYNSYNRKVRELIKELKDEEDRAGYINDFSKYIDRIDGFINNFRFIHDFSDEEFIYWIE 540 Query: 363 CTSR--HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES- 419 SR + L TPL + + ++ + IFTSAT+++ +D +F +G+++ Sbjct: 541 VNSRKSNSKLVATPLKIDGELQKNLYLNLNQIIFTSATIAIGNDFTYFKESIGLDKNTLD 600 Query: 420 LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 ++ SPFDY Q + + ++P + +++ L+ + + G+ F+L TS+ + Sbjct: 601 KVIHSPFDYDNQMKVYIPNDIPNPSDKNFIDEISEYLKTQLIVSRGKAFVLFTSYQTLNY 660 Query: 480 LAEQFRATM---TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 + R + + + + G + QL+ +++ N +L T SFWEGVD++G LS VI Sbjct: 661 VYYMIRDELEANGIELFIHGMAPRSQLVNMYINGKNPVLFGTDSFWEGVDIKGHQLSNVI 720 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 + KLPF P DP+ +A +E +G + F E Q+P+AVI KQG+GRLIR D G + I Sbjct: 721 LIKLPFKVPSDPVTEAIIEHITAQGKNSFTEYQIPEAVIKFKQGIGRLIRSKTDSGTITI 780 Query: 597 CDNRLVMRPYGATFLASLP--------PAPRTRDIARAVR 628 DNR++ + YG F+ S+P + +DI+++V+ Sbjct: 781 LDNRVITKKYGKYFMDSIPTKNINILSKSEILKDISKSVK 820 >UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG63_THET1 Length = 960 Score = 574 bits (1480), Expect = e-162, Method: Composition-based stats. Identities = 231/699 (33%), Positives = 344/699 (49%), Gaps = 81/699 (11%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + F+P G+L+K PG++ R+ Q MA+ V ++I + LVVEAGTGTGK+ AYL P Sbjct: 252 IESIFSPGGELSKTFPGYEVRDQQIDMALEVVRSINNSKHLVVEAGTGTGKSLAYLIPSA 311 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALK---YTGNVALLKGRSNYLCLERLE 113 AL+ ++V+IST + LQDQLY++D+P V K L V+L+KGR+NYLCL R E Sbjct: 312 IFALKNNQRVVISTDTINLQDQLYNKDIPAVRKLLGGKGKDLRVSLVKGRNNYLCLNRWE 371 Query: 114 QQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDC 173 + +G + P + V +L W T+ GD+S +++ Q W V++T + C C Sbjct: 372 RFLRSGINTPEEAKFAVKVLL-WLQTTITGDVSELPLTSDEKQFWQRVSATEETCTTRVC 430 Query: 174 PMYK--DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLP 231 K CF+ +AR +A + +VV+NH L L+D+ S ++P D +I DEAH+L Sbjct: 431 RNRKGRQCFLFRARVEAESSHLVVINHALLLSDLASNNS----VLPNYDYLIIDEAHRLE 486 Query: 232 DIASQYFGQSLSSRQLLDLAKD-------------------ITIAYRTELKDTQQLQKCA 272 D A+ + G + SR L +L R +Q+ A Sbjct: 487 DQATNHLGFEVDSRALHELLNRVMDNSNPVRPEGISARLPVHMQGSRASNASVEQVTNIA 546 Query: 273 DRLAQSAQDFRLQLGE----------------PGYRGNLR-------------ELLANPQ 303 RLAQ + R ++ E GY +LR LLA Sbjct: 547 MRLAQRTERTRARVDEFFASLGRLLPASMGMQNGYDEHLRLTAEVRGGEQWEGVLLAWEN 606 Query: 304 IQRAFLLLDDTLELCYDVA--------KLSLGRSALLDAAFERATLYRTRLKRLKEINQP 355 ++ L D + C ++ A + A Y + + Sbjct: 607 LKLTLRELVDEVHHCGELLEGLEGLHIAEYEELLAEVQAIEVFLQDYIHEMNSIITAPTE 666 Query: 356 GYSYWYECTSRH--FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG 413 W + R+ TL PL V +E + K + I TSATL+ + + + T RLG Sbjct: 667 NDVTWISYSHRYGTITLHKAPLDVGGILQEELYSKKKAVILTSATLTTDRNFDYVTGRLG 726 Query: 414 IEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTS 473 + + + L+L SPF+Y ALL V ++P+ G + +++ ++ A GR +L TS Sbjct: 727 LYEFQQLMLGSPFNYQETALLLVPTDIPEPGTAGYQDAVESLVAELVLAAEGRTMVLFTS 786 Query: 474 H----AMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRG 529 H A + + + A + VL QGE S+ +LLQQF S +L+ T SFWEGVDV G Sbjct: 787 HSAVQATQKAIYREL-ARHDILVLSQGEGSRHRLLQQFKSNPRTVLIGTRSFWEGVDVVG 845 Query: 530 DTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDAD 589 D LSL+II KLPF P++P+ AR E D F++ +P A++ LKQG GRLIR Sbjct: 846 DALSLLIIAKLPFEVPNEPVFVARSETFA----DAFNDYAIPQAILRLKQGFGRLIRSKT 901 Query: 590 DRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVR 628 DRGV+VI D R++ + YG FL SLP + AR + Sbjct: 902 DRGVVVILDKRVLTKRYGVKFLTSLPNCKMQKGPARLLA 940 >UniRef50_D1N0Q3 Helicase c2 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0Q3_9BACT Length = 701 Score = 572 bits (1475), Expect = e-161, Method: Composition-based stats. Identities = 200/646 (30%), Positives = 302/646 (46%), Gaps = 36/646 (5%) Query: 2 TDDFAPDGQLAKAIPG----FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLA 57 + FAP G L +A ++ R Q +M+ A+ A+ G+ L +EA TG GK++AYL Sbjct: 54 EEFFAPGGPLKQAAEYGGRPYEFRPQQLEMSTAIADALTAGENLCIEAPTGVGKSFAYLV 113 Query: 58 P----ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE 113 P A+ + + ++ST + LQ+QL +DLP + + AL KGR NYLC R Sbjct: 114 PLIYRAVHSGRPAVVSTETINLQEQLIDKDLPLLKQLTGINFKAALAKGRHNYLCRRRFA 173 Query: 114 QQALAGGDL---PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG 170 + D + DV L W +T DG+ + + W +V S NCLG Sbjct: 174 MLSGEQRDTLLPAAGLAVDVTRLGKWMQRTTDGERDSI-DFRLEPTVWSMVCSEGINCLG 232 Query: 171 SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG-----ELIPEADVMIFD 225 C +++CF KAR+ DAD+VV NH LF D+ ++ + G L+P ++ D Sbjct: 233 PKCEFFRNCFYYKARQAWEDADIVVANHALFFTDLGMRLASGGNGAAGSLLPNYGAVLID 292 Query: 226 EAHQLPDIASQYFGQSLSSRQLLDLAKD-----------ITIAYRTELKD-TQQLQKCAD 273 EAH L D A+++ G LS ++ + EL+ + A Sbjct: 293 EAHTLEDNAAEHLGLHLSRIGIVSTLNRLYNPEAARGLLMRKGADPELRGIVADARDEAY 352 Query: 274 RLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLD 333 + +DF E + + ++ L L L D + R+ LD Sbjct: 353 GFFKHFEDFLADHRETALEIQQPDRFPD-RLSPHLLKLSKLLTDYLDDIDDASFRTE-LD 410 Query: 334 AAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWI 393 A R + + P Y+ E +L PL+VAD +++ + + Sbjct: 411 AQLVRCREFLNGIDHFTHKTLPDAVYYAESDRNSISLHAAPLNVADILADVLFNQDFPVM 470 Query: 394 FTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLA 453 SATL+V +F +R G +LLL SPF S QA + + R +P LA Sbjct: 471 LCSATLTVRRSFDYFVNRTGFCNGRTLLLDSPFG-SDQAHIYISRGMPDPKDDNFNAALA 529 Query: 454 AMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQGET-SKGQLLQQFVS 509 + +E G+ F+L TS+ +R A+ R +L+QGE ++ LL++F Sbjct: 530 DEIPRFVEVTQGKAFVLFTSYGTLRYCADALRGYFQEKGWQLLIQGENLTRTGLLREFKE 589 Query: 510 AGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQ 569 N++L T SFW GVDV G+ LS VI+ KLPF P PL+ ARM +G F E Sbjct: 590 DVNSVLFGTDSFWTGVDVPGEALSNVIVTKLPFAVPSHPLIAARMARIERQGKSSFAEYS 649 Query: 570 LPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 LP+AV+ +QG GRLIR DRG++V+ D R++ + YG FL SLP Sbjct: 650 LPEAVLKFRQGAGRLIRSRSDRGIIVLLDKRVISKNYGRIFLDSLP 695 >UniRef50_A5TWB3 ATP-dependent helicase n=14 Tax=Fusobacterium RepID=A5TWB3_FUSNP Length = 822 Score = 571 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 207/694 (29%), Positives = 336/694 (48%), Gaps = 72/694 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + FA DG LAK I GF+ R+ Q +MA + AI + + +++EAGTGTGKT AYL PA+ Sbjct: 124 IKNYFAKDGILAKEIKGFEYRKEQEEMAHYIQDAINEDRKIIIEAGTGTGKTLAYLIPAI 183 Query: 61 R----AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 + KKKVII+T + LQ+QL +D+P +K + L+KGRSNYLC + + Sbjct: 184 KWAVANKKKVIIATNTINLQEQLLLKDIPLAKSIIKEDFSYVLVKGRSNYLCKRLFNELS 243 Query: 117 LAG----GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD 172 + ++ + + W N+T GD + W LV ST + CLG Sbjct: 244 IGRSIDIETFSMEAREQIEYILKWGNKTKTGDKAELPFEVY-PDVWELVQSTTELCLGKK 302 Query: 173 CPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGE----LIPEADVMIFDEAH 228 CP K+CF +K R + M+AD+++ NHH+F AD+ V+ + ++P D++IFDEAH Sbjct: 303 CPYRKECFYMKTRIEKMEADILISNHHVFFADLNVRAETDFDSEYLILPRYDMVIFDEAH 362 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAY------------------RTELKDTQQLQK 270 + +A YF +S L I +L+D+QQ Sbjct: 363 NIESVARSYFSVEVSKISFSRLLNRIYQKKNKRKKEKSALIRVEDTIDEKDLEDSQQYIY 422 Query: 271 CADRLAQSAQDFRL----------QLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYD 320 + L + + ++ E +R+ L N ++ ++ L +TL D Sbjct: 423 LLNALKEEISVLQNIGDEYFEEIRKIYETNTEAPIRKSLNNFEMTKSRFL--ETLRDKKD 480 Query: 321 VAKLSLGRSALLDAAF---------------------ERATLYRTRLKRLKEINQPGYSY 359 + + L L +F + Y K + Y Y Sbjct: 481 IFQSKLADFLTLMMSFNNVIDEEKDKNPEVINFNNHLKMFKTYIDSFKFINSFEDDNYIY 540 Query: 360 WYECTSR--HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA 417 W + S+ + L TPL++A K ++ IF SAT+ N + ++F LG+++ Sbjct: 541 WLDINSKRTNVVLTATPLNIAKKLSSVLFDNLDRLIFASATIVANGNFNYFKKSLGLDEE 600 Query: 418 ESL--LLPSPFDYSRQALLCVLRNLPQT-NQPGSARQLAAMLRPIIEANNGRCFMLCTSH 474 + + ++ SPF+Y Q + + ++ + N + + I+ NG+ F+L TS+ Sbjct: 601 DCIEAIIKSPFNYDEQMSVYIPTDIQDSENINAFVTDASKFILDILLKTNGKAFILFTSY 660 Query: 475 AMMRDLAEQFRATM---TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDT 531 M+ + + V L G+ + QL+++F A N +L T+SFWEGVDV+G+ Sbjct: 661 TMLNQIYYSISKKLIDKGFEVFLHGDKPRSQLIKEFKEAENPILFGTTSFWEGVDVQGEN 720 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 LS VII KLPF P DP++ A + GG+ F + QLP+A+I KQGVGRLIR D Sbjct: 721 LSNVIITKLPFLVPTDPVVSAISKKIEEDGGNSFTDFQLPEAIIKFKQGVGRLIRKKTDS 780 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAPRTRDIAR 625 G + I D+R++ + YG+ F+ +LP + + + Sbjct: 781 GNIFILDSRILKKRYGSLFINALPSQKNIKILEK 814 >UniRef50_Q1K3T5 Helicase c2 n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3T5_DESAC Length = 850 Score = 571 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 208/706 (29%), Positives = 318/706 (45%), Gaps = 79/706 (11%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + A G LA + ++ R Q +MA+AV +A + +EAGTGTGK+ AYL PA+ Sbjct: 130 VAHVLAAHGPLASHLGSYEERPEQLRMALAVAEAFNQNGLATIEAGTGTGKSLAYLIPAI 189 Query: 61 R----AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 ++ V IST + LQ+QL S+DLP + + + + L+KGR+NYLCL RL+ Sbjct: 190 MWALDNEQPVAISTNTINLQEQLISKDLPLLKEVMDREFHSVLVKGRNNYLCLRRLDSAH 249 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 + ++ L W+ T G S W V D C + CP Y Sbjct: 250 REPDLFQNEQSGELAQLHEWAAATNVGSRDELT-FIPSSAVWMEVCCEMDQCPRTRCPHY 308 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKES----GFGELIPEADVMIFDEAHQLPD 232 CF KAR++A AD++VVNH L L+D+ ++ ++P ++FDEAH L D Sbjct: 309 SRCFFHKARRRAAHADLLVVNHALLLSDLSLRAETENYSAAAVLPPYSRIVFDEAHHLED 368 Query: 233 IASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQL----------------QKCADRLA 276 A++ F LS + + E +L R+ Sbjct: 369 AATRNFSIRLSHLSFAYSLNRLVHPRKPEKGLLPRLLSTLARELPDTLSALYDSLYRRIE 428 Query: 277 QSAQDFRLQLGEPG--YRGNLRELLANPQ-----------------------IQRAFL-L 310 +A D R + G + G +LL + +Q+ F L Sbjct: 429 TAALDCRQLRDDLGETFTGQRDKLLQTDESASANGFCWRITPQCTETERWLVLQKGFAPL 488 Query: 311 LDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ-------------PGY 357 + L + +L L + FE+ + T ++ + Q Sbjct: 489 IKQCESLSNHLDQLIKACEQLPEKLFEQVSGQLTDIRAMSGRIQCMGSELAIVLSAGDSA 548 Query: 358 SYWYECTSRH-------FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTS 410 W E L P+SVA K+ + + S +FTSATL+VN H+F Sbjct: 549 CTWIEINESRGRKRDKILWLNSAPISVAATLKQAVYDRFRSIVFTSATLTVNRQFHYFHQ 608 Query: 411 RLGIE-----QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNG 465 R G+ + + L L SPFD++ QA + + ++ A LA + + A+ G Sbjct: 609 RTGLNLCPEKRRQQLCLDSPFDFASQARVVIPTDIVPPTHQNYAAMLAEQVEQAVIASEG 668 Query: 466 RCFMLCTSHAMMRDLAEQFRATM---TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFW 522 R F+L T++++++ L + + L QG++++ LL++F +L T SFW Sbjct: 669 RSFVLFTAYSLLKKLYNELEPPLHARGFNCLYQGQSARHLLLKKFRLDQKHILFGTDSFW 728 Query: 523 EGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVG 582 EGVDV G L VII +LPF P +P+ AR E G DPF +P AV+ LKQG G Sbjct: 729 EGVDVPGQALQQVIITRLPFRVPTEPIQIARSEHLEQMGVDPFMHYTVPQAVLRLKQGFG 788 Query: 583 RLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVR 628 RLIR DRGV++I D R++ + YG FL SLPPA R A+ ++ Sbjct: 789 RLIRHRQDRGVVLILDQRVISKGYGRIFLNSLPPAQRLTGPAQTIQ 834 >UniRef50_C6JKU1 ATP-dependent helicase n=2 Tax=Fusobacterium RepID=C6JKU1_FUSVA Length = 832 Score = 570 bits (1470), Expect = e-161, Method: Composition-based stats. Identities = 185/692 (26%), Positives = 326/692 (47%), Gaps = 70/692 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 +T F G L++ GF+ R+ Q MA + + + ++VEAGTGTGKT AYL P Sbjct: 127 ITPYFEKTGLLSQTFKGFEYRDEQLHMAKHIENGLNDEKKVIVEAGTGTGKTLAYLIPSV 186 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 A++ KK+V+IST + LQ+QL ++D+P K ++ L+KGR NYLC + A Sbjct: 187 EWAIKNKKRVVISTNTINLQEQLLNKDIPIAKKVVQGDFRYILVKGRGNYLCNRKYFNLA 246 Query: 117 LAGG----DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD 172 L + + + W +T GD S D+ W L S D C G+ Sbjct: 247 LGENVNFEEFSNSQKTQFKEIIIWGKKTEKGDKSELP-FEVDNSVWELFQSETDICAGAK 305 Query: 173 CPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG----ELIPEADVMIFDEAH 228 CP +CF +K+R++ +AD+++ NHH++ +D+ +++ ++PE +++FDEAH Sbjct: 306 CPYKGECFFLKSREEKKNADILITNHHMYFSDLAIRKEIGFNTEYSILPEYGLVVFDEAH 365 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRL---- 284 + +A YF S + I A + K+T L + + ++ D R Sbjct: 366 NIEKVARDYFSYEASKYSFTKIMNQIF-ATEGKKKNTGSLDILLNYIKNTSLDSRNILEK 424 Query: 285 ------------------------------QLGEPGYRGNLRELLANP------------ 302 Q+G +R E+ +P Sbjct: 425 EIKEIKIKHKSLFLEGREYFNHIIEVFSKGQMGTFTFRAKKEEMEHSPFLSSLIDFREKF 484 Query: 303 --QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 + + ++ D + + +R + + + + + + YW Sbjct: 485 TSEYNSYMRKVRSLIKEIRDEEDEQGTINDFI-KYTDRLENFFNNFRFINDFDDEEFIYW 543 Query: 361 YECTSR--HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE 418 E SR + L TPL + ++ ++ + IFTSAT+++ D +F +G+E+ Sbjct: 544 IEVNSRKSNSKLVATPLKIDNELQKNLYINLKQIIFTSATIAIGSDFSYFKESIGLEEDT 603 Query: 419 S-LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 ++ SPFDY +Q + + ++P + +++ L+ ++ + G+ F+L TS++ + Sbjct: 604 LDKVIHSPFDYDKQMKVYIPDDIPNPSDRNFVDEISEFLKALLIKSKGKTFVLFTSYSAL 663 Query: 478 RDLAEQFRATM---TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSL 534 + R + + + + G + L+ +++ N +L T SFWEGVD++G LS Sbjct: 664 NYVYYLLRDDLEANGIELYIHGMAPRTHLVNMYINGRNPVLFGTDSFWEGVDIKGKQLSS 723 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 VII KLPF P DP+ +A +E+ +G + F E Q+P+AVI KQG+GRLIR D G + Sbjct: 724 VIIVKLPFKVPSDPVTEAIIENITAQGKNSFIEYQIPEAVIKFKQGIGRLIRSKTDHGTV 783 Query: 595 VICDNRLVMRPYGATFLASLPPAPRTRDIARA 626 I DNR++ + YG F+ S+P R + ++ Sbjct: 784 TILDNRVINKRYGKYFMESIP-TRNIRIVGKS 814 >UniRef50_Q1PXS1 Similar to ATP-dependent DNA helicase (DNA-damage-inducible protein G) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXS1_9BACT Length = 847 Score = 566 bits (1460), Expect = e-160, Method: Composition-based stats. Identities = 205/703 (29%), Positives = 330/703 (46%), Gaps = 84/703 (11%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 +++ P G L+ IPG++ RE Q M +V+ A +EAGTGTGK+ AYL PA+ Sbjct: 130 LSNLLRPGGILSVTIPGYEYRESQVDMLTSVSDAFNNDTVATIEAGTGTGKSLAYLLPAI 189 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 + K++V+IST + LQ+QL +D+PT+ L+KGR+NY+CL + Q Sbjct: 190 FWSVKNKERVVISTNTINLQEQLMYKDIPTLKIENIPNFKSVLVKGRNNYICLRK-AQNL 248 Query: 117 LAGGDLPVQILSDVILLR--SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCP 174 GD+ ++ L+ SW+ +T DG + + D+ W +V S D C C Sbjct: 249 QFEGDMLIEEREKKQLIHILSWAEKTRDGSKADLNLLVNDN-VWEMVQSEADQCTRLKCN 307 Query: 175 MYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG----ELIPEADVMIFDEAHQL 230 Y CF AR+ A AD++V+NHHL +AD+V+++ G ++P +I DEAH L Sbjct: 308 FYNKCFFYSARRNASSADILVINHHLLMADLVLRKETRGYDSTAILPPFKRIIIDEAHNL 367 Query: 231 PDIASQYFGQSLSSRQLL---------------------------------DLAKDITIA 257 +A+ G S S ++L D+ DIT Sbjct: 368 ESVATSNIGLSFSRMRILKPLGKLVNQKDNKKGLLPFLKNKIKDVDFQCNKDITVDITEG 427 Query: 258 YRTELKDTQQ-----LQKCADRLAQSAQDF-RLQLGEPGYRGNLR---ELLANPQIQRAF 308 +L D + + + +S + + E G LR ELL+ P + Sbjct: 428 IYPQLLDMRIEIYTCVTNTFSDIFESVNSYINNKFLENGVELKLRITDELLSTPLWSDSI 487 Query: 309 LLLDDTL------------ELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKE----- 351 L +L + +L +L + F T +TRL K Sbjct: 488 EKKIRHLCTEIHNFVILLNKLIAAIERLDKESRDILSSLFIDITSCKTRLNTAKNDLFSF 547 Query: 352 -INQPGYSYWYECTSRH----FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLH 406 ++ W E + P+ +++ K + + I TSATL++++ Sbjct: 548 IRSEENLCRWIELRRYNDNFFIKFCNAPIDISNALKAYLFDNYRTIILTSATLTIDNTFT 607 Query: 407 HFTSRLGIE-----QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIE 461 + G+ + L+L SPFDY Q+++C+ ++ + + L L +I Sbjct: 608 FYQKNTGLHLLPEKRITELILSSPFDYKSQSMICIPTDISDPDDSYYKKDLVENLSKLIA 667 Query: 462 ANNGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQGETSKGQLLQQFVSAGNALLVAT 518 +GR +L TS+ ++ D+ + + L QGE ++ LL+ F + ++L AT Sbjct: 668 ITDGRSLVLFTSYRLLNDIFDMLKPYFTGQGYTCLKQGEDNRHNLLETFKNDKTSILFAT 727 Query: 519 SSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLK 578 SFWEG+DV+GD L VII +LPF P++P+++AR E ++GG+ F + LP AV+ LK Sbjct: 728 DSFWEGIDVKGDALECVIITRLPFKVPNEPIIEARTEAIEMKGGNSFYDYSLPVAVLKLK 787 Query: 579 QGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTR 621 QG GRLIR +DRGV+ I D R+ + YG F+ SLP A + Sbjct: 788 QGFGRLIRSKEDRGVVFIFDRRIATKSYGKVFIKSLPKAKCIK 830 >UniRef50_D2QZI1 Helicase c2 n=2 Tax=Planctomycetaceae RepID=D2QZI1_9PLAN Length = 666 Score = 566 bits (1459), Expect = e-160, Method: Composition-based stats. Identities = 212/666 (31%), Positives = 329/666 (49%), Gaps = 46/666 (6%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 + P G++A +PG++ R Q ++ + +A+ G+ LV EAGTG GK++AYL PA+ Sbjct: 4 EEILGPAGRIAARLPGYEHRPQQLDLSGGIAKALAAGRHLVAEAGTGVGKSFAYLVPAIL 63 Query: 62 A-------------------KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKG 102 +K+++IST + +LQ+QL ++DLP + + L+KG Sbjct: 64 HATSDQAENAQASEGDEEGPRKRIVISTHTISLQEQLLAKDLPLLRSVIPREFTAVLVKG 123 Query: 103 RSNYLCLERLEQQALAGGDL--PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL 160 R NY+ L RL+ A L + V L +WS +T G +S + S W Sbjct: 124 RGNYVSLRRLQYAAERARTLFSTEEEFEQVRDLVAWSKETGGGSLSDMT-IKPKSTVWDE 182 Query: 161 VTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD 220 V S + NCLG +CP Y +CF +AR++ A ++VVNH LF +D+ ++ G ++P+ D Sbjct: 183 VASDSGNCLGRNCPTYSECFYYRARRRVHHAQILVVNHALFFSDLALRRVG-ASILPDYD 241 Query: 221 VMIFDEAHQLPDIASQYFGQSLSSRQLLDLA--------KDITIAYRTELKDTQQLQKCA 272 I DEAH + +A + G S++S Q+ L + R Q + +C Sbjct: 242 AAILDEAHTIEQVAGDHLGLSITSGQIQYLLSRLYNDRTNKGLLVSRKLTTAQQLVMQCY 301 Query: 273 DRLAQSAQDFRLQLGEPGYR-GNLRELLA-NPQIQRAFLLLDDTLELCYDVAKLSLGRSA 330 R D + ++ G +RE + + + L L + C + R Sbjct: 302 LRADDFFHDCATLAQQRDHKNGRIREPDQVDNLLSPSLLKLSREVRRCGEQIDDESERQN 361 Query: 331 LLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH-----FTLALTPLSVADKFKELM 385 L +A +R L + + G YW + L+ P+ V +E + Sbjct: 362 FL-SAADRLQLISGEISHWISQDTAGSVYWISQQASRAGKPRVELSAAPIDVGPALREHL 420 Query: 386 AQKPGSWIFTSATLSVN-DDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTN 444 +K S I TSATL+ ++ SR+G+ Q++++ + SPF+Y QA L ++ LP Sbjct: 421 FEKTRSVILTSATLATGKGSFDYYKSRIGLTQSDAIRVGSPFNYREQAQLILVSGLPDPG 480 Query: 445 QPG--SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE---QFRATMTLPVLLQ-GET 498 A ++ IE +G F+L TS+A + A +F A L + Q G Sbjct: 481 SEKDKFEVAAAEQMKRYIERTDGHAFVLFTSYAHLERTASLLTRFLAENNLALYSQAGHE 540 Query: 499 SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCR 558 + Q+L +F +L+ T SFW+GVDV GD L VII KLPF+ PD PLL+AR+E R Sbjct: 541 PRTQMLARFKENPRGVLLGTDSFWQGVDVPGDALQNVIIPKLPFSVPDQPLLEARLEAIR 600 Query: 559 LRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 GG+PF + QLP+AVI L+QG GRLIR + D G++VI D R+ + YG TFL SLP Sbjct: 601 ESGGNPFRDYQLPEAVIKLRQGFGRLIRSSRDSGMVVILDPRMQTKAYGRTFLESLPECE 660 Query: 619 RTRDIA 624 + A Sbjct: 661 LIHERA 666 >UniRef50_B8CW80 Helicase c2 n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW80_HALOH Length = 822 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 193/696 (27%), Positives = 336/696 (48%), Gaps = 61/696 (8%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + F P G L++ + ++ RE Q ++ V + + ++EAGTGTGK++AYL PAL Sbjct: 126 IIEFFEPGGSLSQFLNDYEYREQQLEVVREVINSFNNHEFTLIEAGTGTGKSFAYLVPAL 185 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLER---LE 113 + +K V++ST + LQ+QL +DL + KAL + ++KGRSNY+C + LE Sbjct: 186 FWAKKNEKTVVVSTNTINLQEQLIYKDLVLLKKALSFDFKAVMVKGRSNYICKRKIKHLE 245 Query: 114 QQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDC 173 Q+ D + + W ++ G S V D++ W + S D CL ++C Sbjct: 246 QELNNYFDDDPEKQVQFYKVLDWLEESKSGSKSELNFVV-DNEIWNEIASETDLCLRTNC 304 Query: 174 PMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKES---GFGELIPEADVMIFDEAHQL 230 P + C+ +KARK+ AD+++VNHHL L+D+++K G ++P +I DEAH Sbjct: 305 PFFDTCYFMKARKEVFSADILIVNHHLLLSDIMLKSEYSERDGGILPRYSNLIIDEAHNF 364 Query: 231 PDIASQYFGQSLS--------------SRQLLDLAKDITIAYRTELKDTQQLQKCAD--- 273 +IAS++ G+ +L + + T LK+ +++ K D Sbjct: 365 DEIASRHLGRPFYYKLLHKYLNKVYYPKNRLSLIPRIRNRFSATNLKNKKEVLKIIDTEI 424 Query: 274 -----RLAQSAQDFRLQLGE---PGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLS 325 R+ + + ++ +L E G +R + + ++D L ++ L Sbjct: 425 VPQVKRVEEQSHEYFQKLNEFVNQDGEGVIRLTQDIIEGEAYSKIVDSGDTLLGNLNNLG 484 Query: 326 ---------------------LGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECT 364 L+A R + L+ + + Y +W E Sbjct: 485 IYLNNLYEEFMTLNSSDISNFEELIIELEAYINRCQHFAKSLEFNIKAEEENYVFWIEKD 544 Query: 365 SR-HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLP 423 + PL V++ +++ + + I TSATL+VND+ ++F + LGI + L + Sbjct: 545 YNLNVKQENAPLKVSNIIDKILWETMDNVILTSATLTVNDNFNYFKTILGINKCSQLKIE 604 Query: 424 SPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQ 483 SPF+YS QA L + ++P N +L+ ++ G +L TS++M+ ++ Sbjct: 605 SPFNYSEQATLIISDDIPPANSKKYLPVATDILKEMLLLLRGSTLVLFTSYSMLNYCTKK 664 Query: 484 FRATM---TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL 540 + + +L QG + +L+ F + N ++ T SFWEGVD++GD L +++ KL Sbjct: 665 IEPVLKDDGIVILPQGRYPRKYILETFKANSNQVIFGTMSFWEGVDIKGDDLRYLVMMKL 724 Query: 541 PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR 600 PF P +P+ ARME + G +PF LP+AVI KQG GRLIR + D G ++ D+R Sbjct: 725 PFPVPTEPVSAARMEQLKEEGKNPFTNFSLPNAVIRFKQGFGRLIRSSKDTGKIICLDSR 784 Query: 601 LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR 636 + + YG FL S+P + + + V + +S+ Sbjct: 785 IKTKSYGRVFLNSIPSGCPVKVMDKTVLLQELHNSK 820 >UniRef50_B6BV17 Helicase c2 n=1 Tax=beta proteobacterium KB13 RepID=B6BV17_9PROT Length = 640 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 213/634 (33%), Positives = 335/634 (52%), Gaps = 13/634 (2%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK 63 F G LA + ++ R+ Q QMA + +++ + +V+EAGTG GKT YL P +R Sbjct: 11 FFDEKGPLASHLSNYQKRDGQVQMAQFIDESVTLKKTVVIEAGTGIGKTLGYLLPLVRQN 70 Query: 64 KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA-LAGGDL 122 KK+IIST +K LQ+QL +D P + KALK NV++LKGRSNYLC R+ + + Sbjct: 71 KKIIISTATKNLQEQLLEKDFPILQKALKLNFNVSILKGRSNYLCHHRINNHSKMFFSKA 130 Query: 123 PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVV 182 I SDV L +T GD++ + VTST++NCL DC DCFV Sbjct: 131 DASIFSDVEGLLK---KTNTGDVAELKKNFSGN-ITHAVTSTSENCLFGDCKFSNDCFVN 186 Query: 183 KARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 KAR++A A+V+VVNHHLF +D + L+P++DV++FDEAH L D+A Y + Sbjct: 187 KARRRAHSAEVIVVNHHLFFSDFFNENDDANNLLPKSDVIVFDEAHNLIDLAMLYSSKVF 246 Query: 243 SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANP 302 SS +L + D+ + + + +R S + + + +L +L Sbjct: 247 SSLKLNRVLDDLINHLKNSVIGLENFSMIFNRYNFSISQLLDLVKDEPQKISLYKLSQLT 306 Query: 303 QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYE 362 + + + + LE + K + +DA+ + + LK + ++ + W E Sbjct: 307 TFKDHLIEIMNNLEELINAIKEPGFINKDIDASIKELNNFIELLKNIINPSEKKNALWLE 366 Query: 363 CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLL 422 + ++ +TP+ V F + A S +FTSAT++ N++ +F G++ E+ + Sbjct: 367 KFNNSISIHITPVDVKGIFSKTTASN-DSMVFTSATMTTNNNFDYFKDLTGLKDIETRVF 425 Query: 423 PSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 SPF+Y + ALL + LP N+ L P I+ N GR L TS + +A Sbjct: 426 ESPFNYEKNALLHIPMGLPNPNEKDFFSSLVDYAYPAIKLNKGRTLFLTTSLNGVEQVAN 485 Query: 483 QF-----RATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 QF R TL +L QG L+++F ++ N +L+ + SFWEG+D+ GD L+L+II Sbjct: 486 QFEFINNRNADTLNILRQGMLPNQLLIEEFKNSQNCVLIGSFSFWEGIDLIGDNLTLLII 545 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 DKLPF SPDDP++ A++ + D F + Q+P + +KQG+GRLIR+ D+GV ++ Sbjct: 546 DKLPFKSPDDPIVDAKINLLNEK--DFFMKSQIPMTTLLMKQGMGRLIRNFSDKGVAILG 603 Query: 598 DNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 DNR+ + YG L SLPP D + + F+ Sbjct: 604 DNRIQKKYYGKQILKSLPPFQLVEDYNQVLNFIE 637 >UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helicase n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EC75 Length = 958 Score = 565 bits (1455), Expect = e-159, Method: Composition-based stats. Identities = 199/679 (29%), Positives = 318/679 (46%), Gaps = 77/679 (11%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKK 65 +L + +P ++ R+ Q M V QA++ + L++EAGTGTGK+ YL P++ + ++K Sbjct: 253 RLKETLPHYESRDAQDMMFQEVMQALDDNKHLLIEAGTGTGKSLGYLLPSIYQSVKQEQK 312 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG-DLPV 124 V++ST + LQ+QL RD+P +++ + + A+ KGR +YLCL + E + P Sbjct: 313 VMVSTHTINLQEQLRDRDIPLLTQVVPFPFKAAIFKGRGHYLCLRKFEHKINRRDFHSPK 372 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + + + W QT +GD W ++S +D+CLG CP ++ C+ +A Sbjct: 373 EDVITAAQMLVWLTQTENGDDEELNLGGRGGDFWETISSDSDSCLGRACPWFRKCYYHRA 432 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 + +A ADVV+ NH D+ +L+P + ++ DEAH L D+A ++ G + Sbjct: 433 KHEAGIADVVITNHSKLFTDVKANH----QLLPSYERLVIDEAHHLEDVAGKHLGLQMKY 488 Query: 245 ----RQLLDLAKDITIAYRTELK-----------------------DTQQLQKCADRLAQ 277 L L KD L+ D +++ DRL+ Sbjct: 489 FSVVHTLTRLYKDSRSGQLPALRQLLQASPHEKAVEWSSVIDRLYPDLITVKENWDRLSD 548 Query: 278 SAQDFRLQLGEPG------YRGNLRELLANPQIQRAFLLLDDTLELCYDV----AKLSLG 327 + G+ + L L L DV KL Sbjct: 549 QLFGLLPERGDASPGDAGQFSLRLSPLKKPKDWDSMAELEHQIHLTLGDVVRKGDKLIAE 608 Query: 328 RSALLD------------AAFERATLYRTRLKRLKEINQPGYSYWYECT----SRHFTLA 371 LD F+ +R L+ +N G YW E S+ L Sbjct: 609 MKEDLDDYSADSLLTDLSGLFKDLAAHREDLRSFMALNDEGTVYWMEANGNFRSKSLQLY 668 Query: 372 LTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA------ESLLLPSP 425 P+ V+ KEL K S I TSATLSV+ LG+++A ++ LPSP Sbjct: 669 AVPVDVSSHLKELFFDKKQSVILTSATLSVDKSFQFMIENLGLQEAAEAGNLNTVQLPSP 728 Query: 426 FDYSRQALLCVLRNLPQT----NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 F+Y QALL V R+ P L L A +GR +L TS+ M+R + Sbjct: 729 FNYREQALLVVPRDFPSVKGSVGDALFVNTLVKSLADTAVATHGRMLVLFTSYRMLRQVH 788 Query: 482 EQFRATM---TLPVLLQGE--TSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 E + + + VL QG TS+ +L+++F + ++L+ TSSFWEGVD+ G+ L+ + Sbjct: 789 EPLKEALASSDITVLGQGMDGTSRTKLIRRFQDSSASVLLGTSSFWEGVDIPGEALTCLA 848 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 I +LPF P+ PL++A+ E + + +PF ++ +P AVI KQG GRL+R A D+G++++ Sbjct: 849 IVRLPFQPPNHPLVEAKSELLQQQKKNPFMKLSVPQAVIRFKQGFGRLVRTAQDKGIVIV 908 Query: 597 CDNRLVMRPYGATFLASLP 615 D R++ YG FL SLP Sbjct: 909 YDTRVIESYYGKYFLYSLP 927 >UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5B5_DESRM Length = 930 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 210/692 (30%), Positives = 326/692 (47%), Gaps = 71/692 (10%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 P+G LA +P F+ R Q M VT+ + + ++VEAGTGTGK+ AYL PA+ K Sbjct: 239 LGPEGILATTLPRFRYRSQQCDMMEQVTKGLNGDKTVLVEAGTGTGKSLAYLVPAIAWAK 298 Query: 65 ----KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 +V+IST + LQ+QL+++D+P ++K +Y A++KGR NY+CL R Sbjct: 299 QNHERVLISTHTINLQEQLWNKDIPLLAKLPEYEFKSAIMKGRGNYICLRRWHSFMKEDN 358 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD-C 179 P + + + W QT GD V D + W V S +D CLG+ C +K+ C Sbjct: 359 HTPDEAAF-LAKILIWIYQTNTGDKGELVLNYSDFEYWYRVCSESDGCLGNRCQYFKEKC 417 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 + + A++KA AD+V+VNH L L+D ++P +I DEAH L + A+ + G Sbjct: 418 YFMAAKRKAERADIVIVNHSLLLSDANADN----MILPSYGPLIIDEAHHLENCATDHLG 473 Query: 240 QSLSSRQLLD--------LAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGY 291 ++++ +L L+K IA+ T ++L + Q ++ E Sbjct: 474 RAVTRVGVLRWLAVATKLLSKLEKIAFLTIDGRWEKLLLQSSETKQRTREAATSFFEMAL 533 Query: 292 R--------------------GNLRELLANPQIQRAFL--LLDDTLELCYDVAKLSLGRS 329 GN+ + + P A L LL + LC + K+S Sbjct: 534 SWIKSIDRNGEGRCSMRFDRGGNIDGIPSIPVAVDAELDNLLVNLRTLCQALVKISDQLE 593 Query: 330 A-------------LLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR--HFTLALTP 374 L A L+ + + YW E P Sbjct: 594 EGTVITGGGPGIIRDLAAWASVGQELSDNLEWICRHQEESQVYWVEGGGDSPEVVFRSAP 653 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-----QAESLLLPSPFDYS 429 + V E + + + TSATLSV+ + H+ + +G++ L SPF+Y+ Sbjct: 654 IDVGPLLYEKLFSENRPVVLTSATLSVDGNFKHYINSVGLDFLPQENILEKHLNSPFNYN 713 Query: 430 RQALLCVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA 486 QA+LCV R++ Q +L+ + I A GR +L TSH +R+ ++ + Sbjct: 714 EQAILCVARDILPPGQVSNKEYHDELSKAIFHISMAAEGRSLVLFTSHRSLRETYQRLKD 773 Query: 487 TMTLPVLL----QGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPF 542 + + + S+ +L++QF+ +L SSFWEGVD+ G+ LS VII KLPF Sbjct: 774 QYENEDICLLGHELDGSRRRLVEQFMEGRRTVLFGASSFWEGVDIPGEALSCVIIVKLPF 833 Query: 543 TSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 P+ P+ +AR++ +G + F E Q+P AVI KQG GRLIR +DRGV+V+ D RLV Sbjct: 834 APPNHPVTEARLQKLSRQGRNGFMEHQIPQAVIKFKQGFGRLIRGPEDRGVVVVLDGRLV 893 Query: 603 MRPYGATFLASLPPAPRTRD----IARAVRFL 630 + YG F SLP A RD I++ RF Sbjct: 894 EKRYGYKFFNSLPIAQHIRDSWLGISKKARFW 925 >UniRef50_B3DY63 Rad3-related DNA helicase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DY63_METI4 Length = 673 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 204/644 (31%), Positives = 321/644 (49%), Gaps = 33/644 (5%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK 63 F+P G LA+A ++ R Q +MA + ++EK + L++EA TGTGK+ AYL P+L Sbjct: 29 FFSPSGPLAQA-AHYEYRPQQEKMAEEIYSSLEKKEHLIIEAPTGTGKSLAYLVPSLLYC 87 Query: 64 K----KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG 119 K + +IST + LQDQL +D+P + K + LLKGR NY C +RLE+ Sbjct: 88 KQFSQRGVISTHTLNLQDQLLHKDIPLLKKTFFQDFSAVLLKGRQNYFCPKRLEKVMKHA 147 Query: 120 GDLPVQI-LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 DL ++D++ + WS +T GD+ + + W + S C C Sbjct: 148 SDLFSHFEINDLMRIYDWSVRTTTGDVEELDPLP-SASLWSQICSEPGLCNSRSCSHNPR 206 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADM---VVKESGFGELIP-EADVMIFDEAHQLPDIA 234 CF K R+K+ +D+ +VNH + + + V E +P +IFDEAH L +A Sbjct: 207 CFYQKFREKSAQSDLTIVNHAFYFSLLGQSVDPEFQKETGLPFGESFVIFDEAHTLEKVA 266 Query: 235 SQYFGQSLSSRQLLD-LAKDITIAYRTEL----KDTQQLQKCADRLAQSAQDFRLQLGEP 289 S G S+S +LL+ LA+ + R L K+++ L K + Q+ Q LG Sbjct: 267 SIQLGFSVSKYRLLNNLARLFNPSTRKGLLLCLKESKLLTKNIEAYEQA-QSLFQALGRM 325 Query: 290 GYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA-----AFERATLYRT 344 + +L E + L D L +++ + + E+ +L R Sbjct: 326 LVQNSLSEQRILAPLSLPHPLPDTLERLVKEISSVLINLEDKEIKEEIENCLEKISLERR 385 Query: 345 RLKRLKEINQPGYSYWYECT-----SRHFTLALTPLSVADKFKELMAQKPGSWIFTSATL 399 L E+ P + YW E + + L PL V + L+ +K S I TSATL Sbjct: 386 ALLEFVEMKIPEHVYWVELSDPSNPEGNVQLLAAPLEVGPLLQTLLYEKEISVIMTSATL 445 Query: 400 SVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQ-PGSARQLAAMLRP 458 V +F R+G+ + + L SPFDY RQ + + +N+P +Q P LA + Sbjct: 446 QVASHFSYFQDRVGLY-SRTFQLQSPFDYGRQMKIIIPKNMPDPSQSPQYEEALAYWIER 504 Query: 459 IIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQ-GETSKGQLLQQFVSAGNAL 514 ++ G +L T+ + + E + P +Q G+T + +LL F A +A+ Sbjct: 505 LVRYTKGSALVLFTNRKTLLTMTEALGQKLTALNFPFFVQDGKTPRHKLLNLFKEAQHAV 564 Query: 515 LVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAV 574 L SFW+G+DV G++L VII KLPF++PD P ++A+ E +G + F LP+AV Sbjct: 565 LFGMDSFWQGIDVPGESLRNVIITKLPFSAPDHPQVQAKCEKLEQQGKNAFTHYSLPEAV 624 Query: 575 ITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 + +QGVGRLIR +D+G++ I D+R++ + YG FL S+PPAP Sbjct: 625 LKFRQGVGRLIRSKEDKGIIAILDSRILSKSYGKVFLNSIPPAP 668 >UniRef50_B9XI74 Helicase c2 n=1 Tax=bacterium Ellin514 RepID=B9XI74_9BACT Length = 719 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 213/700 (30%), Positives = 336/700 (48%), Gaps = 86/700 (12%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + F+P G L++A F+ R Q++MAVAV +A+E LVVEAGTG GK+ AYL P Sbjct: 20 VESIFSPTGILSRA-SNFEYRPQQQRMAVAVAKALENKDHLVVEAGTGVGKSLAYLIPSI 78 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 A+ + KK +IST + LQ+QL +DLP + + L + +LKGR NYLC RL + Sbjct: 79 LYAIASSKKAVISTHTINLQEQLTQKDLPMLEQVLPIKFSYTMLKGRGNYLCSRRLFKAM 138 Query: 117 LAGGDL-PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 L ++ + WS T DG +S + D + W V S C C Sbjct: 139 QQSNSLFTSPEEEELKRIHEWSKTTKDGSLSD-FEIEPDPKVWSHVCSERGLCSPKMCGH 197 Query: 176 YKD-------CFVVKARKKAMDADVVVVNHHLFLADM-VVKESGFGELIPEADVMIFDEA 227 + CF +AR++ + ADV+VVNH LF + ++E G ++ + D ++FDEA Sbjct: 198 QSEFGQQNGVCFFQRARQRILSADVLVVNHTLFFTLLGGIEEENEGGVLFKNDFVVFDEA 257 Query: 228 HQLPDIASQYFGQSLSSRQLLDLAK-----DITIAYRTELKDTQQLQKCADRLAQSAQDF 282 HQ+ +AS++ G S+SS Q+ + L+ + + AD L ++ F Sbjct: 258 HQMESVASKHIGLSVSSGQMRYALQRLWNPRTEKGILATLRQGKTVTLVADLLREADHFF 317 Query: 283 -------------------------RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLEL 317 R + R EL+ + L + EL Sbjct: 318 GEVETACEELRKAQSDQNAGESNAARAKRAWTELRIRKPELVQDNVTLPIQRLREAVSEL 377 Query: 318 CYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTS---RHFTLALTP 374 G+ L R R + ++ Y YW E + ++F L P Sbjct: 378 IKMTEDKDTGQE--LVECNRRLADLREEVAMFLNQSEEDYVYWVERSGKTQKNFALNAAP 435 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDD------------------------------ 404 + VA+ + + S I TSATLSV++ Sbjct: 436 VDVAEFLRRRLFGCDTSIIMTSATLSVSEKDLESAKAKAAAAEKKSEPERPARFQKRNEF 495 Query: 405 --LHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEA 462 L++F R+G ++A L + +PF Y Q L V+ +P G L + I+ Sbjct: 496 PGLNYFVRRVGAQEATLLQVGTPFHYEEQMKLFVVNKMPDPRDQGYRDALIHWIEHFIKM 555 Query: 463 NNGRCFMLCTSHAMMRDLAEQFRA---TMTLPVLLQGE-TSKGQLLQQFVSAGNALLVAT 518 +G+ F+L TS+++M+D+A++ + + L V +QG T + +L++F +++L T Sbjct: 556 THGKAFVLFTSYSLMQDVADRMQPFFDKLKLEVYVQGTGTPRSVMLEKFKENVDSVLFGT 615 Query: 519 SSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLK 578 SFW+GVDV G+ LS VII +LPF PD PL++AR+E+ GG+PF E LP+A++ + Sbjct: 616 DSFWQGVDVPGEALSNVIITRLPFAVPDHPLIEARIENIEAHGGNPFSEFSLPEAILKFR 675 Query: 579 QGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 QGVGRLIR D+G++V+ DNR++++ YG FL ++P P Sbjct: 676 QGVGRLIRTKTDKGIVVVLDNRVLVKRYGQAFLDAMPKCP 715 >UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2 Tax=Desulfitobacterium hafniense RepID=B8FZZ1_DESHD Length = 929 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 196/676 (28%), Positives = 334/676 (49%), Gaps = 59/676 (8%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + F+ G L + ++ R Q QMA AV +++ +V+EAGTGTGK+YAYL P L Sbjct: 236 IESCFSSGGILENKLKSYESRLGQLQMAKAVGESLTGSTHIVIEAGTGTGKSYAYLIPGL 295 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 + KKV+++T + LQ+Q++ +DLP +++ L ++ ALLKG+SNY+CL+R Sbjct: 296 WWSKKTGKKVVVATHTIPLQEQIFKKDLPLLAQVLPFSFRGALLKGKSNYICLKRWSFTL 355 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 +L ++ + W +T GD + ++ W + ++C+ C Sbjct: 356 GVTAELAPGERLALLSVMVWLRETTTGDWQEVSQIPSLNKLWGSLNCEEESCIPGKCSHA 415 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 C+++++RK+A +AD+++VNH L +D+ +++ ++PE +I DEAH L A + Sbjct: 416 NRCYMLQSRKRAEEADLIIVNHSLLFSDIKTEKN----ILPEYHELIIDEAHHLHQAALE 471 Query: 237 YFGQSLSSRQLLD----LAKDITIAYRTELKDTQQ--------------------LQKCA 272 G +S Q+ L++ + ++ +K Q L + Sbjct: 472 QLGNEISLEQISRVLNLLSRSMAGSFYGNVKARAQVWERLLSVALWERFRGYLEKLPEAC 531 Query: 273 DRLAQSAQDFRLQLG-----EPGYRGNLR--ELLANPQIQRAFLLLDDTLELCYDVAKLS 325 D L Q A++ E YR + + P + L L++ D+ K Sbjct: 532 DELYQQAEELFATFAQIVGNELSYRLTVHCHQESWWPTVAVQIENLLGRLKIITDLLKAM 591 Query: 326 LGRSALLD------------AAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALT 373 L D R ++++QP W E ++R L + Sbjct: 592 LNLLDAQDDEDSAALAHEISGRIRNLEEMRECFVLAQQVDQPTRVSWLEQSNR-ILLKTS 650 Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE-SLLLPSPFDYSRQA 432 P+ V++ KE + + TSAT+S+ + HF +G++++ SLL+ SPFDY RQ Sbjct: 651 PVDVSNLLKEKLFAPLDCAVLTSATISIANSFQHFLREIGLDESTPSLLVDSPFDYERQM 710 Query: 433 LLCVLRNLPQTNQPG--SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT- 489 L V+++L + ++A + + E GR +L TSH +R++ + Sbjct: 711 QLLVVKDLVDVKHCDLFNTEEVALFISEVTERMQGRTLVLFTSHRFLREIHLPLSRYLGG 770 Query: 490 --LPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPD 546 + +L QG + + +L+ F++ ++L+ SSFWEG+D+ GD LS VI+ KLPF P+ Sbjct: 771 SGIELLAQGIDGGRQAILEAFLNNSRSVLLGASSFWEGIDIPGDALSCVILVKLPFGPPN 830 Query: 547 DPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPY 606 PL+ AR E +G +PF E LP+AV+ KQG GRLIR DRG++++CD R++ + Y Sbjct: 831 RPLIAARSEYLEAQGRNPFYEFLLPEAVLRFKQGFGRLIRSKSDRGLVILCDGRVIHKRY 890 Query: 607 GATFLASLPPAPRTRD 622 G FL+SLP R Sbjct: 891 GRHFLSSLPVKTHIRT 906 >UniRef50_Q39QU4 Helicase c2 n=11 Tax=Bacteria RepID=Q39QU4_GEOMG Length = 876 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 214/714 (29%), Positives = 321/714 (44%), Gaps = 84/714 (11%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA- 59 + FAP G LA +PG++ RE Q +MA AVT+A + V+EAGTGTGK+ AYL PA Sbjct: 160 IERIFAPAGVLAANLPGYEHREEQLRMAFAVTEAFNDDRVAVIEAGTGTGKSLAYLVPAV 219 Query: 60 ---LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQ-Q 115 +R K+++++ST + LQ+QL +D+P + + L+KGRSNYLCL +L + Sbjct: 220 LWAIRNKERIVVSTNTINLQEQLIKKDIPFLQRHAGVQFRAVLVKGRSNYLCLRKLAGVK 279 Query: 116 ALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 + ++ + +WS +T +G S S + W V D C CP+ Sbjct: 280 SEPSLFADDPAAGELEAIIAWSEKTAEGCRSDL-SFIPKPETWEEVACEADQCGRIKCPL 338 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGE---LIPEADVMIFDEAHQLPD 232 Y CF AR++A ADV+VVNH L +AD+ +++ ++P + ++ DE H L D Sbjct: 339 YARCFFYGARRQAASADVLVVNHALLMADVALRQETGYRSTAILPPFERLMVDEGHHLED 398 Query: 233 IASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADR-----LAQSAQDFRLQLG 287 +A+ + +S + +L L + + + QL R L +D +L Sbjct: 399 VATGHLSSQVSRQGILKLLGRLQNPRKAQRGLLPQLSAQLSREVPVELDDLYRDLAERLE 458 Query: 288 E---------------------------------PGYRGNLRELLANPQIQRAFLLLDDT 314 E LR + + D+ Sbjct: 459 EKLISRTQELAAGAVRAMDAIGLALLSHLKGKGPENGEKKLRVTPSLFGSKLWQETDDEA 518 Query: 315 LELCYDVAKLSLGRSALLDAAFERATLYRTRL-----------KRLKEIN---------Q 354 EL D+ L + +L RL+ + Sbjct: 519 RELAADLNTFVRELKEFLTGCGRLPEAVQEKLSGLLVDLRGVTGRLEALAADLLFFIGRD 578 Query: 355 PGYSYWYECTSRH----FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTS 410 W+E L +PL VA K + + + TSATL+V + + Sbjct: 579 GEVCRWFEVKKGAKGIAVRLCASPLEVAASLKRTVFDAFRTVVVTSATLAVGETFDYLEG 638 Query: 411 RLGIE-----QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNG 465 R GI + LLL SPFDY RQA + + +LP+ G L L + +NG Sbjct: 639 RTGIALLDRGRVTELLLASPFDYERQAFVGIPADLPEPTSRGFQEALEVALHRGLAISNG 698 Query: 466 RCFMLCTSHAMMRDLAEQFRATMTLPVLL---QGETSKGQLLQQFVSAGNALLVATSSFW 522 F+L TS+ ++ + + + L QGE ++ LL +F NA+L T SFW Sbjct: 699 HAFVLFTSYDLLSRIHGRMAEALRRRGLTPMRQGEINRHHLLARFRKEPNAVLFGTDSFW 758 Query: 523 EGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVG 582 EGVDV+G L LV+I +LPF P +P+L+AR + LRGGDPF E +P AVI KQG G Sbjct: 759 EGVDVQGKALELVVITRLPFRVPTEPILEARADHIALRGGDPFMEYTVPQAVIKFKQGFG 818 Query: 583 RLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT-----RDIARAVRFLA 631 RLIR +DRG ++I D+R++ + YG FL SLPP RF + Sbjct: 819 RLIRSREDRGAVLILDSRVLSKNYGRFFLRSLPPVRLADGGSGEVFGEMERFFS 872 >UniRef50_D0J804 Helicase c2 n=4 Tax=Comamonadaceae RepID=D0J804_COMTE Length = 699 Score = 557 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 256/669 (38%), Positives = 364/669 (54%), Gaps = 33/669 (4%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + FA G L+ A P F PR Q +MA+AV QAIE+G LVVEAGTG GKTYAYL PAL Sbjct: 15 VAQVFAQQGALSLAEPAFTPRPGQTRMALAVAQAIEEGGVLVVEAGTGVGKTYAYLVPAL 74 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + ++V++ST +KALQDQL++RDLP + L +A LKGRS+YLC ERLE+ Sbjct: 75 LSGQRVLVSTATKALQDQLFARDLPRLVHGLGLPLRMARLKGRSSYLCTERLERVRQGRT 134 Query: 121 D-LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 Q+L V + W+ T GD++ ++ E S PLV+ST DNC+GSDCP ++ C Sbjct: 135 APQDPQVLRAVADVERWARVTRTGDLAELTALDERSPVMPLVSSTKDNCMGSDCPHWQGC 194 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 V +AR++A++ADVVVVNHHL AD+ V++SG L+P V++ DEAH+L DI Q+ G Sbjct: 195 HVNQARQQALEADVVVVNHHLLFADLDVRDSGMAHLLPNTGVVVIDEAHRLNDIGVQFAG 254 Query: 240 QSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELL 299 ++LSS+QL+ A+D + + L Q+ ++ RLQ G+P G L Sbjct: 255 EALSSQQLVGYARDALRMTQEHARGMADWLVLCATLEQAMRELRLQAGKPPVGGRLAWQA 314 Query: 300 ANPQ------IQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEIN 353 PQ + A + L +L G A L +ER RL R Sbjct: 315 VTPQGLDAVKWRAALVRLGQSLRALLIPLSSLEGAGAELQRLYERGAELLARLARFAAPA 374 Query: 354 QPGYSYWYECTSRHFTLALTPLSVADKFKELMAQK-----------------PGSWIFTS 396 W E +++ + +PLS+A ++ + Q+ +WIFTS Sbjct: 375 DDECVRWLEVGAQYLRMLESPLSIARIMQQRLLQRSLEDAGTDQGEEPDSSRKKAWIFTS 434 Query: 397 ATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAML 456 ATL + L F G+ A+ L + SPFDY RQA + V + ++Q+A ++ Sbjct: 435 ATLGNDAQLSWFVESCGLRGAQVLQVESPFDYHRQAGVYVPQPFAAAGSAQHSQQVAQLV 494 Query: 457 RPIIEANNGRCFMLCTSHAMMRDLAEQFRATM----TLPVLLQGETSKGQLLQQFVSAGN 512 + GR +L T+ + ++ R ++ L VL+QGE K L+Q+F++AG Sbjct: 495 LDAAQRIGGRTLVLTTTLKALHAISASLRTSLGLFADLDVLVQGEAPKLALIQRFMAAGA 554 Query: 513 AL-----LVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDE 567 LVA+++FWEGVD+ GD L LV+IDKLPF PDDPL++AR G F + Sbjct: 555 VAGRGAVLVASATFWEGVDLPGDMLQLVVIDKLPFPPPDDPLVEARSRLLESVGRGAFHD 614 Query: 568 VQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAV 627 LP+A + LKQG GRLIR DRGVLVICD+RL+ YGA +++LPP Sbjct: 615 YMLPEAALALKQGAGRLIRSEADRGVLVICDSRLMTMGYGAELMSALPPMRVLGSQPEFE 674 Query: 628 RFLAIPSSR 636 L S++ Sbjct: 675 AALEQLSAK 683 >UniRef50_B2URD7 Helicase c2 n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2URD7_AKKM8 Length = 661 Score = 556 bits (1434), Expect = e-157, Method: Composition-based stats. Identities = 212/643 (32%), Positives = 332/643 (51%), Gaps = 29/643 (4%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + FAPDG ++A F+ R Q+ MA+AV +A++ PL+VEAGTG GK+ YL PA+ Sbjct: 19 VHRAFAPDGLFSRA-RDFEYRAEQQSMALAVARALQVDAPLLVEAGTGVGKSLGYLLPAV 77 Query: 61 RA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 + +K +IST + LQ+QL+++D+P + AL + ALLKGR NYLC RL + Sbjct: 78 KFALDFDRKAVISTHTINLQEQLFNKDIPLLRTALGIDFSAALLKGRQNYLCHTRLRRAL 137 Query: 117 LAGGDLPVQ-ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 L Q +++ ++ W+ +T DG +S + S+ W +V S C C Sbjct: 138 AQMDSLFTQGEAAELKRIQDWALRTQDGTLSDM-AFRPSSKVWAMVCSEPHACSMRHC-- 194 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMV-VKESGFGELIPEADVMIFDEAHQLPDIA 234 C ARK+ ++A VVV+NH LF M ++S + D +I DEAH + +IA Sbjct: 195 GPSCPYQAARKRVLEAKVVVLNHTLFFGLMAQAEDSEEAGFVFPGDFVILDEAHMIENIA 254 Query: 235 SQYFGQSLS----SRQLLDLAK-DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEP 289 ++ G LS + +LL + L + Q+ D + S F+ + Sbjct: 255 ARQLGVQLSEPHLNYELLRMYNPRTHKGLLKPLNNPSLFQRVQDVMDASGLFFQNARDDL 314 Query: 290 GYRGN------LRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYR 343 G+ G+ L+ + + + + L L+ + + + L R + Sbjct: 315 GFAGSGKIVRILQPEWSQDILSQPLMELIGELKTEREKQEENAAVKDELADMAARMEEAQ 374 Query: 344 TRLKRLKEINQPGYSYWYEC---TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLS 400 LK L ++ + G+ YW E R+ ++ P+ V D +E + S I TSATL Sbjct: 375 ASLKVLMDMTEEGHVYWAERSGPDGRNMSVCSAPVEVGDILRERLFSAGRSAILTSATLG 434 Query: 401 VND-DLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPI 459 D D+ +F R+G E+ L + SPF+Y Q L V R++P+ +QP A L ++ Sbjct: 435 TGDADMSYFAGRVGAERIRKLQIGSPFNYREQMRLIVARSMPEPDQPEYAEVLPEWIKRY 494 Query: 460 IEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQGET-SKGQLLQQFVSAGNALL 515 + + GR F+L TS+ +M AE+ R + +QG+ + +L+ F +++L Sbjct: 495 LAESRGRAFVLFTSYRLMVQAAEKVRPFCEEQGWTLYVQGQDMQRHAMLEAFRKDVDSVL 554 Query: 516 VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVI 575 T SFW GVDV G++LS VI+ +LPF PD PL+++R E R RGG+PF E +P A++ Sbjct: 555 FGTDSFWTGVDVPGESLSNVIVTRLPFEVPDHPLVESRFESIRERGGNPFYEYSVPVAIL 614 Query: 576 TLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 L+QGVGRLIR D G++VI D R+ + YG FL SLP A Sbjct: 615 KLRQGVGRLIRTRSDSGMVVILDPRVATKRYGMRFLKSLPEAR 657 >UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTU8_BACS4 Length = 922 Score = 556 bits (1433), Expect = e-157, Method: Composition-based stats. Identities = 186/666 (27%), Positives = 312/666 (46%), Gaps = 65/666 (9%) Query: 12 AKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVI 67 + G++ R Q +M + + +E+ ++EAGTGTGKT AYL PA +KKVI Sbjct: 252 QNVMEGYEVRAGQTEMMTYIYETMEERAFGLIEAGTGTGKTLAYLLPAAFLAKEKQKKVI 311 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 IST + LQ+QL +++PT+ + L + +V +LKGRS+YLCL++ + + Sbjct: 312 ISTQTIQLQEQLIKKEVPTLERLLPFPIHVVILKGRSHYLCLQKFARLLQEDHNDAYDRT 371 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 + W +T GD+ + ++ W + S +C S C + CF AR Sbjct: 372 VSKAQILVWLLETKTGDVEELSLASHSNRFWNDIASDAYSCNSSKCAWFSRCFYQHARND 431 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 A AD+++ NH L LAD++ +LIP+ D I DEAH L D A++ FGQ L L Sbjct: 432 ARKADLIITNHSLILADILTSN----QLIPKYDYAILDEAHHLEDTATEQFGQQLDYLSL 487 Query: 248 LDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRE----LLANPQ 303 L + + L++ D + +D ++ E G + LL N Sbjct: 488 THLINRM-----GSKRGEGLLRQVYDEIYNDYRDTVEKIEETGTKVKFEWYELFLLLNDY 542 Query: 304 I--------------------QRAFLLLDDTLELCYDVAKLSLGRS----ALLD------ 333 + + ++ ++++ C + L +L+ Sbjct: 543 VINSNTNFNERGRATVKINAKENSWYVIEEAARRCKLYLEEWLANINRIVDILETIESNY 602 Query: 334 -----AAFERATLYRTRLKRLKEINQPGYSYWYECTSRH----FTLALTPLSVADKFKEL 384 + +R + L +L YW E ++ + P++V++ +L Sbjct: 603 NDAFTSFIDRVEGVYSSLIKLLLEQDDHMIYWIEADTKGPKQAIYIKGRPINVSESLADL 662 Query: 385 MAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPSPFDYSRQALLCVLRNLP- 441 QK S I TSATL+VN+ ++ RLG+ ++ + SPF + +Q L V ++P Sbjct: 663 FFQKKDSVILTSATLTVNNKFNYMIRRLGLSDFYVKTKHIDSPFHWDKQVKLMVPTDMPL 722 Query: 442 --QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT--LPVLLQGE 497 + A + I E G+ +L TS+ M+++ + + ++ QG Sbjct: 723 IQDAGEKAYAEATVMQIYRIAEITKGKMLVLFTSYDMLKNCYNYLKEMLDDEYAIIAQGV 782 Query: 498 TS--KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARME 555 S + +L + F A+L+ TSSFWEGVD+ G LS+++I +LPFT PDDP+ +A+ Sbjct: 783 HSGNRTKLTKNFQQFNQAILLGTSSFWEGVDIPGSDLSIIVIVRLPFTPPDDPVFQAKST 842 Query: 556 DCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 + + G +PF ++ LP A++ KQG GRL+R DRG +++ D R+ YG F+ SLP Sbjct: 843 EMKREGLNPFMKLALPQAILRFKQGFGRLVRTTHDRGAVIVLDRRITNTKYGKLFIKSLP 902 Query: 616 PAPRTR 621 P Sbjct: 903 EIPLVE 908 >UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chloroflexi (class) RepID=A5UUI5_ROSS1 Length = 956 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 223/711 (31%), Positives = 342/711 (48%), Gaps = 88/711 (12%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + F+PDG L +A G++ R+ Q +M+ AV +G L+ EAGTGTGK AYL PA Sbjct: 236 IRRFFSPDGALGRAFAGYEQRDQQVRMSEAVADTFNQGGALIAEAGTGTGKGLAYLVPAA 295 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPTVSKAL-----KYTGNVALLKGRSNYLCLER 111 R ++V+IST + LQDQL+ +D+P + + + + ALLKGRSNYLCL+R Sbjct: 296 LHAARRGERVVISTNTINLQDQLFFKDIPALQQVMSNGADEAPFTAALLKGRSNYLCLKR 355 Query: 112 LEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGS 171 + L + ++ ++ W T GD + ++ +W +++ + C G Sbjct: 356 YKDLRRDQR-LMSDDVRALLKVQLWLPTTESGDRAELPLHEGENASWNRMSAAWEQCTGP 414 Query: 172 DCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLP 231 C ++ CF KARK+A A +V+VNH L +AD+ V+ ++IP D +I DEAH L Sbjct: 415 RCSEFQRCFFFKARKQAEAAHLVIVNHALLMADLAVEN----DVIPPYDYLIIDEAHNLE 470 Query: 232 DIASQYFGQSLSSRQLLDLAKDITIAYRTEL-------------------KDTQQLQKCA 272 D+A+ ++ LL DI + ++ D + A Sbjct: 471 DVATDQLSFNVDREGLLAFLDDIFTEGQAQVVGGLLSELPNHFRESMATRTDIDRADAIA 530 Query: 273 DRLAQSAQDFRLQL---------------------GEPGYRGNLRELLANPQIQRAFLLL 311 D L + R + +LR + +++RA+ L Sbjct: 531 DTLRPAVARARDAVYGCFNVLMTFIKREAELTAYDSRLRITDSLRRKPSWAEVERAWDAL 590 Query: 312 DDTLELC------YDVAKLSLGRSALLD---------AAFERATLYRTRLKRLKEINQPG 356 L + + L + LL+ A AT R + + Sbjct: 591 SVALHAVGEGLGRLETLLIDLKDAELLEYDALMLRVQALRRYATDVRVNIGHILTGGAEE 650 Query: 357 YSYWY--ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 W + TL+ PLSVAD + + + + I TSATLSV + R+G+ Sbjct: 651 KVTWLTHDRMRDTLTLSAAPLSVADVLRTNLFEAKTATILTSATLSVGGNFAFIRERIGL 710 Query: 415 EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSH 474 + AE L L SPFDY+RQALL + +++P+ NQ G R L + + A GR +L T+ Sbjct: 711 DHAEELTLDSPFDYTRQALLYIPQDIPEPNQNGYQRALEQAIIDLARATGGRMLVLFTAT 770 Query: 475 AMMRDLAEQFRATM---TLPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGD 530 +R + + + VL QG + S+ LL++F +L+ TSSFWEGVDV GD Sbjct: 771 NALRQTYRAIQEPLEDAGIAVLGQGIDGSRRSLLERFKEFPGTVLLGTSSFWEGVDVVGD 830 Query: 531 TLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADD 590 LS+++I KLPF+ P DP+ AR E DPF++ +P +++ KQG GRLIR +D Sbjct: 831 ALSVLVIAKLPFSVPTDPIFAARSEQFD----DPFNQYAVPQSILRFKQGFGRLIRSRED 886 Query: 591 RGVLVICDNRLVMRPYGATFLASLP-------PAPRTRDIARAVRFLAIPS 634 RGV+ + D RL+ + YG FL SLP P R D+A+ RFLA+ + Sbjct: 887 RGVVAVLDRRLLTKKYGQMFLESLPHTTVRSGPLQRLPDLAK--RFLAVGN 935 >UniRef50_A1W6Z0 Helicase c2 n=5 Tax=Comamonadaceae RepID=A1W6Z0_ACISJ Length = 688 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 244/660 (36%), Positives = 335/660 (50%), Gaps = 40/660 (6%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 FAPDG LA+ P + R Q MA+AV QAI + LVVEAGTG GKT+AYL PAL + + Sbjct: 11 FAPDGPLARVRPHLRSRPGQAAMALAVAQAINARESLVVEAGTGIGKTFAYLVPALLSGE 70 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 +V+IST +K LQDQL +RDLP + +AL VA LKGR+NYLCL RLEQ G Sbjct: 71 RVLISTATKTLQDQLLTRDLPLLQQALALPLRVAALKGRANYLCLYRLEQARRDGEGHDE 130 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + D+ + W+ T GD++ + E S AW VTST DNCLGS CP + C V +A Sbjct: 131 AVAHDLACVERWAQSTRSGDLAEVPGLDEYSAAWRQVTSTVDNCLGSMCPRLRQCHVYRA 190 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 R A ADV+++NHHLF AD+ + +G +L+P+ V++FDEAH+L +IA+Q+ G +S+ Sbjct: 191 RHDAQAADVLIINHHLFFADLGAQGAGAAQLLPDTGVVVFDEAHRLAEIAAQFLGTHVST 250 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLG----------EPGYRGN 294 QLL L +D+ A + Q L Q A RL + + G Sbjct: 251 SQLLQLGQDVVAAGARHARGAADWQGLLQHLRQCAHALRLAVAPGEDADAAGSRIAWTGV 310 Query: 295 LRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ 354 E L A L + L R R+ Sbjct: 311 TPEALDPSAWDGALEGAVAALRAVLAALDGVAQHAPDLAHLHSRTVALLERVLHFCSEAD 370 Query: 355 PGYSYWYECTSRHFTLALTPLSVADKFKELM------------------AQKPGSWIFTS 396 G W E + TPL VA + L A P SWI+TS Sbjct: 371 AGTVRWVESAG-ALRMVETPLDVAGALRTLWKGKPPTQGAWDESDEPPAASAPRSWIYTS 429 Query: 397 ATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAML 456 ATL DL FT G+E A +L +PSPFDY+RQA L V LP + G + QLA + Sbjct: 430 ATLGDGKDLRWFTDACGLEGARTLQVPSPFDYARQAALYVPPALPLPSDAGHSVQLARWV 489 Query: 457 RPIIEANNGRCFMLCTSHAMMRDLAEQFRATM----TLPVLLQGETSKGQLLQQFVSAGN 512 + G +L TS + +A++ + VL+QG S+ +++++F + + Sbjct: 490 GDAVARLGGHTLVLTTSLRALAVIADELCRRFAPGGGIEVLVQGHASRSRMVERFRAQLD 549 Query: 513 A-------LLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPF 565 A +LV +SFWEG+DV G+ L +V+IDKLPF +P DP +A+ +GG+ F Sbjct: 550 ASGRPAGHVLVGAASFWEGIDVPGEALQMVVIDKLPFPAPGDPWEQAQARRLADQGGNVF 609 Query: 566 DEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIAR 625 LP A + LKQG GRLIR+ +D G+LVI D RL+ + YG L +L P R Sbjct: 610 RRHALPSAAVALKQGAGRLIRNENDHGILVIADTRLLHKGYGKPLLRALAPMRRLHTQEE 669 >UniRef50_A6DIX1 ATP-dependent helicase, DinG family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIX1_9BACT Length = 644 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 195/629 (31%), Positives = 312/629 (49%), Gaps = 25/629 (3%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK------KKVIIST 70 F+ R Q MA V A+ +G L VEA TG GK+ AYL PA++ K +II+T Sbjct: 15 DFERRPQQETMASKVYYALSEGLNLCVEAPTGVGKSIAYLLPAVKWHRNTEQTKPIIITT 74 Query: 71 GSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL--PVQILS 128 +K LQ+QL +D+P V L N + GR NY+C+ R+ A D ++ Sbjct: 75 HTKHLQEQLLKKDVPAVQLMLGEDFNAVIGMGRGNYICMRRMNAAAAGSPDFLPDESMIP 134 Query: 129 DVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKA 188 +V ++SWS + +G + A D+ AW V + NCL CP +K CF K+R+ Sbjct: 135 EVFRIKSWSATSENGCKTELP-FAVDNGAWGTVNAEEGNCLNQRCPHFKPCFFQKSRRSL 193 Query: 189 MDADVVVVNHHLFLADMVVKESGFGE---LIPEADVMIFDEAHQLPDIASQYFGQSLSSR 245 ADV++VNH LF AD+ +K E ++P A +I DE H + D+A+ + G LS+ Sbjct: 194 YGADVIIVNHALFFADLAIKAETGDEQAGILPSASAIIVDECHTVEDVAAVHLGIRLSAG 253 Query: 246 QLLDLAKDIT--------IAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRE 297 L + I I+ ++ + K D + Q L + + E Sbjct: 254 TFLYQLRRIYNKRSKRGAISTVSDNRGRHLAAKMHDEVRDFFQSLHAWLPDENKTHRIHE 313 Query: 298 -LLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPG 356 ++ + L LEL D + + + + R L + Sbjct: 314 PVVPENPLAEGLTQLCGLLELYADEEEGNPEKETEYRSLSRRLLKLTDSLSFFLRASSEE 373 Query: 357 YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ 416 + +W+E +++H ++ + VA +L+ + + TSATL+V++ L ++ SR+G+ + Sbjct: 374 HVFWFEKSTKHLSMHAAAIDVAPILNDLLFRSKTPVVTTSATLAVSEKLSYYRSRVGMSE 433 Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 + ++L SPFD+ Q + + LP + ++ LR I + G F+L TS + Sbjct: 434 SLDMILDSPFDFKNQMKVFAAQTLPSPKENDYEKEALTWLRYFIHMSTGGAFVLFTSFSQ 493 Query: 477 MRDLAEQFRA---TMTLPVLLQGETSKGQLL-QQFVSAGNALLVATSSFWEGVDVRGDTL 532 M+ +A+ R M L +L+QGE + LL Q F N++L T +FW GVDV G++L Sbjct: 494 MKRIADAVRPFMNEMGLKLLVQGEAASSALLLQAFKEDNNSVLFGTDTFWTGVDVPGESL 553 Query: 533 SLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRG 592 VII ++PF PD PL+ AR E GG F + +P+A + L+QG+GRLIR A DRG Sbjct: 554 RNVIIMRIPFAVPDHPLIAARCEHLEKTGGRAFFDFSVPEAQLKLRQGIGRLIRSAKDRG 613 Query: 593 VLVICDNRLVMRPYGATFLASLPPAPRTR 621 ++V+ D+R+ YGA FL ++P Sbjct: 614 IVVLMDSRVSNTNYGAKFLRAMPEGCEIE 642 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 551 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 214/670 (31%), Positives = 331/670 (49%), Gaps = 67/670 (10%) Query: 9 GQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KK 64 G LA+ IPG++ R Q +M AV A+ L VEAGTGTGK+ AYL PA+ +K Sbjct: 238 GLLAEQIPGYEYRPQQVEMLRAVASALAGNHYLTVEAGTGTGKSLAYLLPAIYWACSQRK 297 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 +V I+T + +LQ+QL+ +DLP + + L ++ AL+KGRSNY+C +L Sbjct: 298 RVAIATHTISLQEQLWQKDLPQLRELLPFSFKAALVKGRSNYICRRKLRDYLANPPAGEA 357 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + L + +LR W T GD S E+ + + + C GS CP +CFV A Sbjct: 358 ERLFAMRVLR-WLEVTTSGDWSEMKLTPEEEGFKFALAADTETCTGSACPFNDECFVNAA 416 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLS- 243 R++A A+++++NH L L+D+ + +++P+ +I DEAH L + A+++ G S+S Sbjct: 417 RREAEAANILILNHSLLLSDIRLNN----QVLPDYPYLIIDEAHHLEEAATEHLGSSVSQ 472 Query: 244 ----------------------------------SRQLLDLAKDITIAYRTELKDTQQLQ 269 + +L D +D+ + L Q+ Sbjct: 473 ASCELFFRRLGRGEQAYSFLGRVRNLARRLPPEGNLELADFLEDMELTVTATLAGWQEFW 532 Query: 270 KCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDD-------TLELCYDVA 322 + RL+ +A+ + + L+E A + F L++ LE ++ Sbjct: 533 ESLGRLSDAAR-WEEAGYTLRFTSRLKETPAWDNLLSVFGSLEENLSGLASRLERLSELL 591 Query: 323 KLSLGRSALLDA--AFERATLYRTRLKRLKEINQPGYSYWYECTSR-HFTLALTPLSVAD 379 + DA Y L ++ + + W E + + L PL + Sbjct: 592 SAAGAGEFAADAGNFAAVVAQYSYDLGQILDADPATSVSWLEKNNHGQYILRSAPLDIGP 651 Query: 380 KFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-----EQAESLLLPSPFDYSRQALL 434 EL+ + + I TSATL+VN+ ++ + G+ ++ S + SPFDY QAL+ Sbjct: 652 LLAELLFSRKQAVILTSATLTVNNSFDYYHQQTGLQELPADRVVSCQVSSPFDYRSQALV 711 Query: 435 CVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT-- 489 C +R LP Q AR + +L I A GR +LCTSH +R++ E A + Sbjct: 712 CSIRGLPNPGQLKDADYARAITPVLTAICPAVGGRSLVLCTSHRFLREVYELLSADLNGS 771 Query: 490 -LPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 VL QG + S+ +LL++F+ A+L+ +S+WEG+D+ GD L VII +LPF SP Sbjct: 772 GYRVLAQGIDGSRSRLLEEFIQTPRAVLLGANSYWEGIDLPGDLLRCVIIPRLPFPSPGI 831 Query: 548 PLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 P L ARME RG + F + LP A+I +QG GRLIR A DRGVLVI D RL+ + YG Sbjct: 832 PTLAARMEHLAARGQNAFATLSLPQAIIRFRQGFGRLIRRASDRGVLVILDQRLLSQRYG 891 Query: 608 ATFLASLPPA 617 F+ SLPP Sbjct: 892 RLFIQSLPPV 901 >UniRef50_D0LMW6 Helicase c2 n=3 Tax=Haliangium ochraceum DSM 14365 RepID=D0LMW6_HALO1 Length = 650 Score = 551 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 213/654 (32%), Positives = 318/654 (48%), Gaps = 31/654 (4%) Query: 1 MTDD----FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYL 56 M+D F P+G LA P + PR Q +A AV AI G+ L+ EA TGTGK+ AY Sbjct: 1 MSDYIDTVFGPEGLLADRFPAYAPRPGQISLARAVDAAIADGEHLLAEAPTGTGKSLAYA 60 Query: 57 APA----LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL 112 PA +V+++T S LQ+QL ++DLP + L + ALLKG+ NYLCL RL Sbjct: 61 VPASYHAAHNGLRVVLATSSINLQEQLAAKDLPFLEGILPWPVRFALLKGKRNYLCLSRL 120 Query: 113 EQQALAGGDLPVQILSDVIL-LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGS 171 ++ G + ++ ++ W+++T GD S D + W +++ + C G Sbjct: 121 QEAKKDGFVFDISSDIEMKRSIQDWASETKTGDKSELSFEPPD-RIWENYSTSAEECKGR 179 Query: 172 DCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKES-GFGELIPEADVMIFDEAHQL 230 DC Y +CF KAR +A AD++V N+HL + ++E+ G ++P+ DV + DE H+L Sbjct: 180 DCRYYSECFATKARAEAEKADIIVSNYHLLCVHLQLREATGQDLVLPKFDVAVCDEGHKL 239 Query: 231 PDIASQYFGQSLSSRQLLDLAKDITIAYRTELK-----DTQQLQKCADRLAQS-AQDFRL 284 DIA +FG ++ L LAK I L +++ + R +S A RL Sbjct: 240 ADIARDFFGFRVTPGSLRWLAKRIQDRDHASLALALDVESRDFFEALHRYQRSDAYKCRL 299 Query: 285 QLGEPGYRGNLRELLANPQIQRAFLLLDDTL------ELCYDVAKLSLGRSALLDAAFER 338 + EP NL LL +I F ++ + + A R Sbjct: 300 RQIEPVPYLNLHGLL--REIADFFGQTRNSAPDPGMDGFDAETQAARIDDLAEAQRTAAR 357 Query: 339 ATLYRTRLKRLKEINQPGYSYWYE-CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSA 397 A L L E+ + Y+ E L P+ V ++ + + S I TSA Sbjct: 358 AALLADNLSAAMELANKDFVYYLEELPKGGVALCGKPIEVNEQLRTAFFDQTQSTIVTSA 417 Query: 398 TLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLR 457 TL+ D + LG+ L++ SPFD+ +Q L V + PG +A + Sbjct: 418 TLTTGDSFDYVRKDLGVPSPRELVVDSPFDFRKQVLFIVPDCVIDPRGPGFPTCVAWTVE 477 Query: 458 PIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVA 517 + GR L TS+ + + A VL QG+ + QL+ +F ++L+ Sbjct: 478 QAVRLAGGRTLGLFTSYRNLDTAYARI-ADCGYRVLRQGDKPRTQLVDEFRRDVKSVLLG 536 Query: 518 TSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITL 577 T SFW GVDV+G+ LS V+ID+LPF P+DP++ A + RGG+ F LP A+I Sbjct: 537 TESFWAGVDVQGEALSCVVIDRLPFPPPNDPVIDA----LKERGGNSFLSASLPRAIIAF 592 Query: 578 KQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 KQG GRLIR +DDRGV+V+ D RL YG FL SLP ++R + FLA Sbjct: 593 KQGFGRLIRASDDRGVVVVLDERLYTTFYGRAFLRSLPAMRKSRTLEDVQTFLA 646 >UniRef50_A7HIV0 Helicase c2 n=4 Tax=Anaeromyxobacter RepID=A7HIV0_ANADF Length = 635 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 216/630 (34%), Positives = 328/630 (52%), Gaps = 40/630 (6%) Query: 35 IEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYT 94 + + + LV EAGTGTGKT AYL PA + ++VI+ST +K LQ+Q++ +D+P + + Sbjct: 1 MSERRYLVAEAGTGTGKTLAYLVPAALSGRRVIVSTATKTLQEQIWGKDIPLLRERCGVE 60 Query: 95 GNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAED 154 A LKGRSNY CL R + A A + + + +W+ T GD S + + Sbjct: 61 FAAAYLKGRSNYFCLARGAEFARAPTFAAREEAALWPRIEAWARATETGDRSEI-DLPDQ 119 Query: 155 SQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG- 213 W +++T + C G +C Y+DCFV +AR A +DV++VNHHLF AD+ ++ S G Sbjct: 120 FHTWKDLSATAETCAGRECERYEDCFVTRARALAGQSDVLLVNHHLFFADLAMRTSRAGV 179 Query: 214 ELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCAD 273 E++PE DV++FDEAH + ++A++YFG +SS ++ +L +D A +++ Sbjct: 180 EILPEYDVVVFDEAHAIEEVATEYFGLQISSYRVEELGRDALRAVGDRPDLASMMREATG 239 Query: 274 RLAQSAQDFRLQLGE------------------------------PGYRGNLRELLANPQ 303 L ++ + F L + R L + P Sbjct: 240 ELRRAGERFFQALADGLHASGAGAARGWGARAGGRGRGPRRREEDESVRAPLTSEVLEP- 298 Query: 304 IQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYEC 363 +R LD LE ++ L+ + L RA R L + + +P Y+ E Sbjct: 299 CERDQARLDAALEALREL--LADAEAPPLAQIARRAGELRVELAAVTAMKEPSRVYFAEV 356 Query: 364 TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE---QAESL 420 R L P+ VA++ + + ++ + IFTSATL+ +F ++G+ + Sbjct: 357 RGRGVFLRAAPIDVAEELQARLYRRTDTVIFTSATLAAQGRFDYFRRQVGLAPEFDVDEA 416 Query: 421 LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL 480 P PFD+ RQA + +P+ N PG A +R + E GR F+LCTS+ M L Sbjct: 417 RFPGPFDFPRQAAIVTPPTVPEPNAPGFLDAAAGTIRALAEVTGGRAFVLCTSNRNMHAL 476 Query: 481 AEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL 540 R + VLLQGE K +LL+ F + ++L AT+SFWEGVDV GD LSLV+ID+L Sbjct: 477 HGALRD-LPYQVLLQGERPKARLLEAFRAEP-SVLFATASFWEGVDVPGDALSLVVIDRL 534 Query: 541 PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR 600 PF P DP++ AR+ G D F E+Q+P A + L+QG GRL+R DRG++ I D R Sbjct: 535 PFAPPGDPVVAARLRALEAEGRDGFSELQVPAAALALRQGFGRLVRTRGDRGLVAILDRR 594 Query: 601 LVMRPYGATFLASLPPAPRTRDIARAVRFL 630 LV + YG FLA+LP P R +A A + Sbjct: 595 LVTKGYGRAFLATLPRCPVLRSVAEARSWW 624 >UniRef50_Q6MEU9 Putative ATP-dependent DNA helicase dinG n=2 Tax=Parachlamydiaceae RepID=Q6MEU9_PARUW Length = 753 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 214/707 (30%), Positives = 318/707 (44%), Gaps = 92/707 (13%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---- 60 PDG LA ++ GF+ R Q+QM + +A ++EAGTG GK+ AYL PAL Sbjct: 20 LKPDGLLANSLKGFEFRPQQQQMMTNIIEAYNNDSIALIEAGTGIGKSLAYLIPALIWAA 79 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 R ++ +IST + LQ+QL S+D+P + AL L+KG NYLC+ +LE + Sbjct: 80 RFNERTVISTNTITLQEQLLSKDIPNLLDALDLNLKAVLVKGMHNYLCIRKLEDVQMEMS 139 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + + ++ + +W QTVDG S+ S A W V + N+ C +CP Y+ CF Sbjct: 140 IVSSEEAQEIEKIEAWRQQTVDGSRSSL-SFAPTHSVWEKVGAENEACSHHECPHYQQCF 198 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFG----ELIPEADVMIFDEAHQLPDIASQ 236 KAR++A DA +++VNHHL AD++ + ++P +I DEAH + DIA++ Sbjct: 199 FFKARRQAQDAHILIVNHHLLFADLMRRADTANYSETSILPTYRRIILDEAHHVEDIATE 258 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTE-------LKDTQQL--------------------- 268 YF L +L+ + ++ LK+ QL Sbjct: 259 YFASHLHRIELMRTMGRLGSERHSQQPGKLPILKEKLQLLYNKTPPREISQIVMRLTIDL 318 Query: 269 -------QKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF------------- 308 + ++ + F + P R E+ N Q R Sbjct: 319 PALRHVIHEQINQTFDAFAHFIEAIKNPASRLLGEEVSLNEQKLRILNEHMNHTKWKEEI 378 Query: 309 ------------------LLLDDTLELCYDVAKLSLGRSALLD---AAFERATLYRTRLK 347 L+ L+L + +S LD A T Sbjct: 379 HPSASQLIDSLKNYRLNITNLEAELKLIENERLQEQTKSIRLDIQGLANRLETSISLLNH 438 Query: 348 RLKEINQPGYSYWYECTSRHFTLAL----TPLSVADKFKELMAQKPGSWIFTSATLSVND 403 + + P W E + + L ++ E + K + I SATL+ N Sbjct: 439 FILPPSSPNKVRWIEAHKLKSLINVHLVDADLDISKSLAEFVFSKFPTVILCSATLTSNQ 498 Query: 404 DLHHFTSRLGIEQ-------AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAML 456 RLG+ E + SPFDY +QALL V ++P + P + Sbjct: 499 QFQFIRKRLGLTDKHLPYRQIEEYIYDSPFDYHKQALLAVPTDMPPPSHPDFNWIAFENI 558 Query: 457 RPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT---LPVLLQGETSKGQLLQQFVSAGNA 513 I+A+ G+ F+L TS++M++ AE+ A M + QGE ++ LL +F + A Sbjct: 559 WKAIQASRGQAFVLFTSYSMLQQCAEKLSARMHEHAYVLFKQGEEARQTLLHKFKTTDRA 618 Query: 514 LLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDA 573 +L T SFWEGVDV GD L VII KLPF P +PL++AR E +GG+PF E +P A Sbjct: 619 ILFGTDSFWEGVDVAGDALRCVIIVKLPFRVPTEPLIQARTEAIIEKGGEPFFEYSVPQA 678 Query: 574 VITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 V+ KQG GRLIR+ DRG +V D RLV + YG FL SLP + Sbjct: 679 VVKFKQGFGRLIRNQWDRGCIVCLDTRLVTKGYGKQFLNSLPACEKV 725 >UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2F3_PELTS Length = 937 Score = 548 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 204/688 (29%), Positives = 333/688 (48%), Gaps = 71/688 (10%) Query: 6 APDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR---- 61 DG LA +PG++ R Q++M VT+A+ + + L++EAGTG GK+ AYL P++ Sbjct: 248 GKDGPLADVVPGYEYRPQQQEMIRLVTRALNEEKYLLMEAGTGVGKSLAYLIPSVLWSCL 307 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 +++V+++T + LQ+QL+ +D+P +K +L+KGR NY+CL R Sbjct: 308 NRQRVLVATRTINLQEQLWHKDIPLAAKVTGRPFKASLVKGRQNYICLRRWFSVLENPHQ 367 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 Q + +W T GD S + + W + +D C+GS C K CFV Sbjct: 368 --PQEAGFFARVLTWLTVTQTGDKSELNVIPAEEDFWLSICGESDGCMGSRCRYLKYCFV 425 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS 241 A+++A ++++++ NH L +D+ V+ ++P + +I DEAH L + A+ + G+ Sbjct: 426 NAAKREAEESNLIITNHSLLFSDVKVENR----ILPAYEALIIDEAHHLEESATVHLGRQ 481 Query: 242 LSSRQLLDLAK-----DITIAYRTELKDTQQLQKCA----DRLAQS---AQDFRLQLGE- 288 ++ L +A + +D ++ + + L ++ F QLGE Sbjct: 482 VTQGALNRWLSAAGKALFRLAEKVPPEDVEKWSETIKDSREVLLEAQGNVHFFFQQLGEL 541 Query: 289 -------PGYRGNLRELLANPQIQ----------------RAFLLLDDTLELCYDVAKL- 324 G G + L+N ++ FL L+ + V ++ Sbjct: 542 ASALSNDEGDSGRITLRLSNEKMLANTSYNAVLECGTRCIELFLSLNGKIGYIAKVLEMW 601 Query: 325 SLGRSALLDAAFERATLYR------TRLKRLKEINQPGYSYWYE-----CTSRHFTLALT 373 + +AA + +Y L+ + E + G+ YW E +++ L Sbjct: 602 GITEEVWAEAARDLFQIYNSGQTIIDDLQFILEGREQGFVYWAEFEYSRRGFKNYALYAA 661 Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLL-----PSPFDY 428 P++V E + G+ IF+SAT+SVN HF R G+ + SPF + Sbjct: 662 PVNVGTVLYEQFFKNRGTVIFSSATISVNGTFDHFIDRNGLNNFPPEKIIKASFDSPFAF 721 Query: 429 SRQALLCVLRNLP---QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR 485 RQALLC+ +LP + L + ++EA GR +L TSH ++R+ + + Sbjct: 722 ERQALLCICHDLPVQGAVAEEVYLDNLEEAILKLLEAVGGRTLVLFTSHKVLRETYRRLK 781 Query: 486 ATM---TLPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLP 541 M + +L G + ++ LL++F S +L SSFWEGVDV G+ LS VI+ KLP Sbjct: 782 PRMEARGICILGHGIDGNRLNLLEEFKSTAQTVLFGASSFWEGVDVPGEALSCVIMVKLP 841 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 F SP P+++AR+ED R D F ++ +P AVI KQG GRLIR DRG +++ D R+ Sbjct: 842 FVSPSVPVIEARLEDLARRKRDGFRDLSVPQAVIRFKQGFGRLIRSGSDRGCVIVLDRRI 901 Query: 602 VMRPYGATFLASLPPAPRTR-DIARAVR 628 + R YG FL SLP R DI VR Sbjct: 902 LSRSYGRRFLNSLPLKKHFRGDIETIVR 929 >UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus RepID=C6CUG6_PAESJ Length = 953 Score = 545 bits (1404), Expect = e-153, Method: Composition-based stats. Identities = 195/691 (28%), Positives = 315/691 (45%), Gaps = 77/691 (11%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK----KK 65 + + P ++ RE Q M V ++ + L++EAGTGTGK+ YL PAL K Sbjct: 252 RFMEKYPNYEEREAQTTMFREVYDSLCSDRHLLIEAGTGTGKSLGYLIPALYYGIQQESK 311 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL-PV 124 +++ST + LQ+QL RD+P + + L + ++ KGR NYLCL + E + A + P+ Sbjct: 312 IVVSTHTINLQEQLRQRDVPLLREILPFDFRASIFKGRGNYLCLRKFESKINAKDLVAPI 371 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + W ++T GD + S W V S D+CL CP +K C+ +A Sbjct: 372 DDAITASQMVVWLSETETGDQEELNFGNKGSDFWSTVASDADSCLNRQCPWFKRCYYHRA 431 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 + ++ ADV + NH + D+ L+P +I DEAH + ++A ++ G L+ Sbjct: 432 KHESNIADVCITNHSMLFTDVQADHR----LLPSYSHLIIDEAHHVEEVAGKHLGMQLNY 487 Query: 245 ----RQLLDLAKDITIAYRTELKDT-----------------------QQLQKCADRLAQ 277 Q L KD L+ Q +++ D+L + Sbjct: 488 FSLTHQTTRLFKDARSGLLPALRLRLQQEDDERVQAWTETIDTVIPVFQDVKEHWDKLFE 547 Query: 278 SAQDFRLQLGEPGY---------------RGNLRELLANPQIQRAFLLLDDTLELCYDVA 322 F + GE G +G L + + T++ Sbjct: 548 LLYAFVGESGEAGNDNGQAVCRLRSDTPPKGWDDVLTIENNVHTELSRVVKTVDKMATDI 607 Query: 323 KLSLGRSAL------LDAAFERATLYRTRLKRLKEINQPGYSYWYECTS----RHFTLAL 372 K L ++ L+ T + L+ ++ Q YW E ++ R L Sbjct: 608 KDRLDDQSIQGLITDLNGVVRDLTRVKDDLRTFLKMEQNSEVYWIEASTTYRYRSVHLYA 667 Query: 373 TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE------SLLLPSPF 426 P+ V+ + ++ S I TSATLSV+ + +LG+E E ++ LPSPF Sbjct: 668 VPVDVSKQLQQYFFDVKDSIILTSATLSVHKSFQYAEEQLGLEGFEENNRLKTVQLPSPF 727 Query: 427 DYSRQALLCVLRNLP----QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 +Y QAL+ + RN P P L + L GR +L TS+ M++ + E Sbjct: 728 NYREQALVIIPRNFPTLKGSAGDPQFISMLVSSLADSAVETKGRMLVLFTSYRMLKQVYE 787 Query: 483 QFRATM---TLPVLLQGETS--KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 + + + VL QG S + +L ++F +L+ TSSFWEGVD+ G+ L+ + I Sbjct: 788 PLKEALMGSGIQVLGQGIDSGNRTKLTRRFTQQPETVLLGTSSFWEGVDIPGEALTCLAI 847 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 +LPF P+ PL++A+ E + + +PF ++ +P AVI KQG GRL+R A D+G+++I Sbjct: 848 VRLPFQPPNHPLVEAKSELLQKQKQNPFMKLSIPQAVIRFKQGFGRLVRTAKDKGIVIIY 907 Query: 598 DNRLVMRPYGATFLASLP-PAPRTRDIARAV 627 D R++ YG FL SLP P T I + V Sbjct: 908 DTRVIDTYYGKHFLYSLPGPKIETMHIDQMV 938 >UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Bacillales RepID=A8VXY5_9BACI Length = 935 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 191/695 (27%), Positives = 316/695 (45%), Gaps = 68/695 (9%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL- 60 TD + + ++IPGF+ R Q M V + Q +VEAGTGTGKT AYL PA+ Sbjct: 237 TDIIENEELMKQSIPGFELRSTQMDMMKFVEDVFKHDQIGLVEAGTGTGKTLAYLIPAVI 296 Query: 61 ---RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL 117 + + V+IST + LQ Q+ +++ + + + +LLKGR +YLCL++LE Sbjct: 297 HAVKHDQPVVISTETIQLQSQMLNKEWAVIKDIFPFPVHASLLKGRGHYLCLQKLENLLA 356 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 + L W +T GD+ + + + W V+S +C CP + Sbjct: 357 EDTNDHYDRAVAKAQLLIWILETDTGDVEEVNLASTNYRFWMDVSSDGISCTTPKCPWFT 416 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 + +A+++A DAD++V NH L L D+ + ++IP D +I DEAH L D A++ Sbjct: 417 RDYYQRAKQQARDADIIVTNHSLLLTDIRLSH----QIIPSYDSLILDEAHHLEDTATRQ 472 Query: 238 FGQS---LSSRQLLD-LAKDITIAYRTEL----------KDTQQLQKCADRLAQSAQDFR 283 FG +S QL++ LA D ++ + + Q+LQ+ ++ L + Sbjct: 473 FGHQQDYISVIQLVNALANDEQQSFLSGALYKKLSSSLREKYQELQRISESLHERWNQLF 532 Query: 284 LQLGEPGYRGNLREL----------LANPQIQRAFLLLDDT-----------LELCYDVA 322 ++L E G G + + + + + +T +L +++ Sbjct: 533 MELHEYGTVGKAEKADTSRRSKVIAMDDHTWKPVQEAIQETDGAFRHLITSFRKLLFEIE 592 Query: 323 KLSLGRS---------ALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR----HFT 369 + + L A + L W E R T Sbjct: 593 NEADEKGYLNSLERDIENLSTASQAFEDEYETFYHLYHSQDEKQVIWMELEERGPRQSIT 652 Query: 370 LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE--SLLLPSPFD 427 + P+ V++ + + I TSAT++V + R G+ + LPSPF Sbjct: 653 IRSAPVDVSETLADQLFSSKKRVILTSATMTVKSSFDYVIERFGLTDFDLAVKQLPSPFQ 712 Query: 428 YSRQALLCVLRNLPQ---TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF 484 Y +Q L V ++P T+ A A + + A GR +L TS+ M+R Sbjct: 713 YEKQVGLFVPEDMPMIQGTSDRAYAEACAYHIFRLSGATEGRMLVLFTSYDMLRKTYYAV 772 Query: 485 RATMT--LPVLLQG--ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL 540 R + ++ QG S+ +L++ F ++L TSSFWEGVD+ GD LS +++ +L Sbjct: 773 RDMLDDTYMLIAQGVQTASRQKLIKHFQQFDRSILFGTSSFWEGVDIPGDNLSAIVMVRL 832 Query: 541 PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR 600 PF+ P+DP+ +AR E + +G + F + LP AV+ KQG GRLIR + DRG +++ D R Sbjct: 833 PFSPPNDPVFQARSEAVKEQGKNAFMHLALPQAVLRFKQGFGRLIRSSTDRGAVIVLDRR 892 Query: 601 LVMRPYGATFLASLPPAPRTR-DIARAVRFLAIPS 634 +V YG F SL R D+ ++ +PS Sbjct: 893 MVTTRYGHFFAKSLQDVAVNRMDMDEIIK--ELPS 925 >UniRef50_C1A7T8 Putative ATP-dependent DNA helicase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7T8_GEMAT Length = 713 Score = 541 bits (1394), Expect = e-152, Method: Composition-based stats. Identities = 220/693 (31%), Positives = 323/693 (46%), Gaps = 78/693 (11%) Query: 5 FAPDGQLAKAIPG------FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP 58 P G +A+A+ G ++ R QR MA AVT +G ++EAGTG GK+ YL P Sbjct: 3 LGPYGLVAQAMRGMYGIRDYEDRPSQRAMATAVTTTFNEGGVALLEAGTGVGKSLGYLVP 62 Query: 59 ALR----AKKKVIISTGSKALQDQLYSRDLPTVSKAL-KYTGNVALLKGRSNYLCLERLE 113 ALR ++ ++ST + LQ+QL ++DLP + +AL ALLKG NYLCL RL Sbjct: 63 ALRWAAANGERTVVSTATITLQEQLVAKDLPFLQRALSDQPVRFALLKGWRNYLCLNRLA 122 Query: 114 QQALAGGDL-PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD 172 AG L + DV ++ W+++T DG ++ A + W V++ D C Sbjct: 123 AAQGAGAALFDDNVSDDVAMIAEWASRTKDGSLADLP-TAPRGEVWDEVSAEPDLCGRMK 181 Query: 173 CPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKES----GFGELIPEADVMIFDEAH 228 C Y DCF+ KARK+A ADVVVVNHHL L+D+ V+ ++P ++ DE H Sbjct: 182 CEHYNDCFLFKARKEAAAADVVVVNHHLLLSDVAVRRQVQNWEDSAVLPAYKRLVIDEGH 241 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKD-TQQLQKCADRLAQSAQDFR---- 283 L + A + G S++ R L L + + L +L D L+ ++ D Sbjct: 242 HLEEAAGSHLGSSITRRALSRLFNRLERRGKGLLPTLAAKLSGKNDLLSVASMDLLREGL 301 Query: 284 -----------------------------LQLGEPGYRGNLRELLANPQIQRAFLLLDDT 314 L+L E +L ++ +D Sbjct: 302 FSSVLTARDRTQLLFELLAAVLEQQGGGVLRLTESFQEHDLWRNGIGDTLKELLNEIDAI 361 Query: 315 LELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ------------PGYSYWYE 362 + V + L+ R +RL+ P W E Sbjct: 362 AKGLAMVQTRLESDQSRLEELSSTVNEIRGVTRRLQNAGDALMKGLMPPADGPAVVRWME 421 Query: 363 CTS------RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-- 414 R+ + PL +A ++ + + + + TSATLS + RLG+ Sbjct: 422 FQGKPTPHERNLAVHCVPLDLAPVLRDDLFGRVETAVVTSATLSTDGGFQFLERRLGLAG 481 Query: 415 --EQAESLLLPSPFDYSRQALLCVLRNLPQTNQ--PGSARQLAAMLRPIIEANNGRCFML 470 + + PSPFDY RQALL V +LP N+ + L + A++G F L Sbjct: 482 STSPVRAAIFPSPFDYPRQALLVVPTDLPAPNEQAREHFAGVTRHLHDLAHASDGGLFGL 541 Query: 471 CTSHAMMRDLAEQFRAT---MTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDV 527 TSH +R++AE R P+L+ GE + QLLQ+F +G A+L+ T++FWEG+DV Sbjct: 542 FTSHRDVREMAEWMRGQGLSGRWPLLVHGEEPRDQLLQRFRESGRAILLGTATFWEGIDV 601 Query: 528 RGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRD 587 GD L ++I KLPF P +P++ A+ E RGG+ F E LP A + LKQG GRLIR Sbjct: 602 PGDALRGLLIAKLPFRVPTEPIVAAQCEAIDARGGNAFVEYMLPHASLRLKQGFGRLIRT 661 Query: 588 ADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 A D GV+V+ D R+V + YG L LPPA R Sbjct: 662 ATDAGVVVLSDPRVVTKRYGRALLNGLPPAQRV 694 >UniRef50_A9BWB5 Helicase c2 n=2 Tax=Comamonadaceae RepID=A9BWB5_DELAS Length = 724 Score = 540 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 264/699 (37%), Positives = 369/699 (52%), Gaps = 69/699 (9%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 FAP G L++A F PRE Q +MA+AV QAIE+ Q LVVEAGTG GKTYAYL PAL + + Sbjct: 12 FAPQGLLSRAEALFLPREGQTRMALAVAQAIEQRQTLVVEAGTGVGKTYAYLVPALLSGQ 71 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD-LP 123 +V++ST ++ALQDQLY+RDLP + AL +A LKGRS YLC+ERLE+ Sbjct: 72 RVLVSTATRALQDQLYARDLPRLVAALGMPLRMARLKGRSAYLCMERLERVRQGRTAPQD 131 Query: 124 VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVK 183 Q+L V L+ W+ T GD+ ++ E S A PLVTST DNCLGSDCP ++DC V Sbjct: 132 PQVLRSVALVERWARTTRTGDLGELPALDERSPALPLVTSTRDNCLGSDCPHWQDCHVNV 191 Query: 184 ARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLS 243 AR+ A++ADVVV+NHHL AD+ V+ESG +L+P V++ DEAHQL D Q+ GQSLS Sbjct: 192 ARRAALEADVVVINHHLMFADLDVRESGVAQLLPSVGVVVVDEAHQLNDTGVQFAGQSLS 251 Query: 244 SRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQ 303 +QL A+D+ A + + + + R+ Q+ ++ RL G+P G L PQ Sbjct: 252 GQQLTGYARDVLRAGQELARGMADWMQLSARVEQALRELRLAAGKPPAGGRLPWQGVTPQ 311 Query: 304 ------IQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGY 357 + A + L +L + L FER RL Sbjct: 312 GLDAQRWRTALVTLGRSLRALLEPLVQLQVSDPELRRLFERGNELLRRLATFAAAAVQDT 371 Query: 358 SYWYECTSRHFTLALTPLSVADKFKELMA------------------------------- 386 W E S+ + +PL++A + + Sbjct: 372 VRWLELGSQQMRMLESPLTIAHIMRTRLLGLTQEQEGSEDQEREDAQPEPEPQEQEEGAP 431 Query: 387 ------------QKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALL 434 +WIFTSATL ++ L FT G+ +A+ L + SPFDY+RQA L Sbjct: 432 APVHEAAGLPRQPSGTAWIFTSATLGDDERLSWFTEPCGLREAQVLRVDSPFDYARQAAL 491 Query: 435 CVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTL---- 490 V R Q + ++A + + GR +L T+ + + + + ++ L Sbjct: 492 YVPRPFAQAGSATHSTEVARLALDAAQRLGGRTLVLTTTLRALHAIGDALQQSLGLFGEL 551 Query: 491 PVLLQGETSKGQLLQQFVSAGNA------------LLVATSSFWEGVDVRGDTLSLVIID 538 VL+QG+ K L+++F++AG +LVA+++FWEGVD+ GD L LV+ID Sbjct: 552 DVLVQGQAPKLALIERFIAAGEGREGTGASPGRGCILVASATFWEGVDLPGDALQLVVID 611 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 KLPF PDDPL++AR G F + LP+A + LKQG GRLIR DRGVLV+CD Sbjct: 612 KLPFPPPDDPLVEARSRSLESVGRQAFADYMLPEAAMALKQGAGRLIRRETDRGVLVVCD 671 Query: 599 NRLVMRPYGATFLASLPPAPRTRDIA---RAVRFLAIPS 634 +RL YG A+LPP D A +A++ LA P+ Sbjct: 672 SRLATMGYGRRLRAALPPMRTLVDEAAFVQALQALAQPA 710 >UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=B1I276_DESAP Length = 921 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 217/665 (32%), Positives = 317/665 (47%), Gaps = 52/665 (7%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + P G L + F+ R PQ Q+A+AV +A+E+ L VEAGTGTGK++AYL PA Sbjct: 236 VEAFLGPGGVLTRHFADFEYRRPQMQVALAVGRALEEQTVLTVEAGTGTGKSFAYLVPAA 295 Query: 61 RA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 ++V++ST + LQDQL +DLP + +AL LLKGR +YLCL R Sbjct: 296 LWALDGGRRVVVSTHTVNLQDQLMEKDLPLLGRALDAPLKTVLLKGRGHYLCLRRWGAAV 355 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 LP + + W +T GD + E+ W V + + C + C Sbjct: 356 NEQSFLPDEGFLY-ARIAVWLARTKTGDRAELSLRPEEKGFWDGVAAGDWGCAHAYCRFN 414 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 CF+ +AR+ A A +V+ NH L L+D+ ++ L+P D ++ DEAH L +A++ Sbjct: 415 SVCFLQRARRAAEQAHLVITNHSLLLSDLKMENR----LLPAYDALVLDEAHHLEGVATE 470 Query: 237 YFGQSLSSRQLLDLAKD-----------ITIAYRTELKDTQQLQKCADRLAQ--SAQDFR 283 G ++S L + L+D + L R A+ R Sbjct: 471 QLGTTVSRGALERWVEGLNRLTGRIGEFYPDNRDEFLRDGEALLAAVRRFFALLGARLRR 530 Query: 284 LQLGEPGY---RGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGR------------ 328 +L E + R R L A P+ ++L L +L+ ++ R Sbjct: 531 RELPEEDFAAERLGPRALDACPETAGSYLELAGSLKAYVQRLSRAVERLTDSTVPAVQEE 590 Query: 329 -SALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF---TLALTPLSVADKFKEL 384 L+ + L+ + E PGY +W E R L P+ V + + Sbjct: 591 LRVGLEQELAVGKRLASDLEFVYEAADPGYVFWLEGGGRQTAEGVLRAAPVHVGELLHDG 650 Query: 385 MAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE-----SLLLPSPFDYSRQALLCVLRN 439 + I TSATL+V F R+G+E SL++ SPF Y+ QALL V+ + Sbjct: 651 FFRSGKPVILTSATLTVQSSFSFFDERVGLEHLPRDLRGSLIVGSPFAYAEQALLYVVTD 710 Query: 440 LPQTNQPG--SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLL 494 LP ++ L I+ GR L T+H +R + + L +L Sbjct: 711 LPDPGDGDGAYLDAVSDALGRIVGVTRGRTLALFTAHKALRTAYRRLKPVLEKQGLELLG 770 Query: 495 QG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKAR 553 G + + +LLQ F + A+L SSFWEGVDV GD LS ++I KLPF P+ P+L+AR Sbjct: 771 HGLDGGRARLLQYFRNTPQAVLFGASSFWEGVDVPGDALSCLVIVKLPFEPPNRPVLQAR 830 Query: 554 MEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLAS 613 E+ R RG F+++ LP AV+ LKQG GRLIR DRGV++I DNRLV + YGA FL S Sbjct: 831 REEVRRRGRSDFNDLCLPQAVLRLKQGFGRLIRTTADRGVVIILDNRLVRKRYGALFLES 890 Query: 614 LPPAP 618 LP AP Sbjct: 891 LPAAP 895 >UniRef50_Q7NN01 Gll0614 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NN01_GLOVI Length = 719 Score = 534 bits (1376), Expect = e-150, Method: Composition-based stats. Identities = 205/642 (31%), Positives = 311/642 (48%), Gaps = 47/642 (7%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 ++D F +A+ +PG++ R+PQ MA AV + + +V EAGTGTGK+++ L PA+ Sbjct: 72 LSDAFE---DVARVLPGYEVRQPQLDMARAVERGFAERIAVVAEAGTGTGKSFSALVPAI 128 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + K+V+IST + ALQ+Q +D+P + KAL L+KGRS+Y+ R + LA G Sbjct: 129 LSGKRVVISTATIALQEQYLYKDIPLLQKALPVRFEARLVKGRSHYVSKRRWSESLLAPG 188 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + LR W QT GD++ + S+ W + S D+CL CP + CF Sbjct: 189 ---------ITWLREWYEQTESGDLADLPTSPP-SEIWDDIRSDKDDCLREKCPHFDSCF 238 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 ++R+ A +++ NH L L D + G+++P+ D+++ DEAHQ + A++ Sbjct: 239 YFESRRSLGQAQILITNHALLLID----RASHGQILPDFDLLVIDEAHQFAEYATRALTL 294 Query: 241 SLSS----RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLR 296 +LS+ R L + K + + + L A R R NL Sbjct: 295 TLSNFGMGRTLSRIKKQFPNLGIALARAEAEANAFFEVLLTEAHQTR--------RYNLD 346 Query: 297 ELLANPQIQRAFLLLDDTLEL---CYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEIN 353 +A+ LL EL D + ++ R D E T Y L+ L E Sbjct: 347 PAMADDLSAAVVRLLQSLKELNLGSEDNLETNVARMRR-DRLVETLTGYEGNLRVLAEPG 405 Query: 354 QPGYSYWYEC-----TSRHFTLALTPLSVADKFKELM-AQKPGSWIFTSATLSVND--DL 405 + + W E + L TPL VA + + ++ SATLS Sbjct: 406 E-NWVNWVEYQTTRGGGTNVALNCTPLDVAPPLGQWFSHPDGPTAVWMSATLSTAGADPF 464 Query: 406 HHFTSRLGIEQ--AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEAN 463 F ++G+ AE + SPFDY Q LL + +LP N A +AA + ++ + Sbjct: 465 DFFRRQVGLPAGTAEERIFASPFDYPSQGLLYLPTHLPDPNDASYANAIAAEIEKLVNFS 524 Query: 464 NGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWE 523 GR F+L TS M+ + A + P Q + K +L++ F + N +L AT+SFWE Sbjct: 525 EGRAFVLFTSLQQMKQVYALLEAKLLWPAQHQEQMPKRRLVEWFRTVKNPVLFATASFWE 584 Query: 524 GVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGD---PFDEVQLPDAVITLKQG 580 GV V G LSLV+ID++PF SP D + AR E GD FD + LP A + LKQG Sbjct: 585 GVSVEGPQLSLVVIDRIPFQSPGDIVYDARCELLSRTSGDRWAWFDRLALPYAQLRLKQG 644 Query: 581 VGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD 622 GRL+R D+G++ I D R+ + YG T L SLPP +R Sbjct: 645 AGRLVRTRTDKGIVAILDPRMHRKAYGKTILKSLPPMQVSRR 686 >UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-related DNA helicase n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GHT3_ANOFW Length = 880 Score = 533 bits (1372), Expect = e-149, Method: Composition-based stats. Identities = 181/626 (28%), Positives = 304/626 (48%), Gaps = 38/626 (6%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKKKVIISTGSK 73 F+ RE Q+QM V A++ Q ++EAGTG GKT AYL P A++ ++ +++ST + Sbjct: 251 FEYREGQKQMMDDVNYALQTCQHALIEAGTGVGKTMAYLLPTVFYAVKQQQPIVVSTYTL 310 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 LQ Q+ ++LP V++ + + A+LKG+ NY+ + + + L D I L Sbjct: 311 QLQKQMIEKELPRVAQLVPFPFTTAVLKGKRNYMSVRKFAR-TLKHIDTNYDIALTKCQL 369 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADV 193 W +T GD+ A + W V S + N + F V+A++KA A V Sbjct: 370 LVWLTETETGDVDELNLTAGGALFWEDVHSDDTN--------EEYDFFVRAKEKAKHAHV 421 Query: 194 VVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL-AK 252 ++ NH + D+ E +P + +I DEAH L D+A+ +FG+ +S + L + Sbjct: 422 IITNHSFVMHDLTADEK----WLPPYEQLIIDEAHHLEDVAAHFFGRHVSYEYIRLLWTR 477 Query: 253 DITIAYRTELKDTQ----QLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF 308 IA ++ + L+ ++L QS + + L+ + R R + + Sbjct: 478 MNDIAMIHKMGALRSLLGDLEYELNQLFQSLRHYVLRRQKGDGRIRYRFVPWKEYGKEWS 537 Query: 309 LLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEI---NQPGYSYWYECTS 365 ++ + + DV +LS + + + T + L+ L+ + + W E + Sbjct: 538 GTIELLMRIMNDVQQLSQMINDIPKEDVKPFTTFIDTLRTLQHLLTSDDDDIVRWLEVDA 597 Query: 366 ----RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE--S 419 T+ PL +A F + + + S I TSATL+ N +RLG++ + Sbjct: 598 KAAVNAVTVISQPLDLAHFFADQLFSRKRSVILTSATLTTNGRFSFIIARLGLDDFYPFT 657 Query: 420 LLLPSPFDYSRQALLCVLRNLP---QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 ++PSPF Y +QA L V +LP A A + I GR +L TS+ + Sbjct: 658 RIIPSPFSYEKQAALMVPTDLPTFPSVTVEQYAEHAAQQVIRIARHTKGRMLVLFTSYEL 717 Query: 477 MRDLAEQFRATMT--LPVLLQGETS--KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTL 532 ++ + +L QG + +L + F A+L TSSFWEG+D+ G + Sbjct: 718 LKQTYAYAKQFNDDQFVLLAQGVSGGNAAKLTRHFQQFEQAILFGTSSFWEGIDLPGSEV 777 Query: 533 SLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRG 592 + V+I +LPF PDDP+++A+ + R +GG+PF ++ LP A++ KQG GRLIR +DRG Sbjct: 778 TCVVIVRLPFAPPDDPVMEAKSDYIRAKGGNPFYDLSLPQAILRFKQGFGRLIRTKEDRG 837 Query: 593 VLVICDNRLVMRPYGATFLASLPPAP 618 ++ + D RL+ Y FL SLPP Sbjct: 838 IIFVFDQRLLTASYSKYFLQSLPPIR 863 >UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ Length = 934 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 195/672 (29%), Positives = 312/672 (46%), Gaps = 70/672 (10%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKK----V 66 LA +P F+ RE Q+ M + A+ + ++EAGTGTGKT AYL P++ KK V Sbjct: 250 LALNMPKFEKRESQQIMMKEIYTALRDSRFSLIEAGTGTGKTLAYLLPSIYFAKKKEEPV 309 Query: 67 IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQI 126 IIST + LQ Q+ +++P + K + ++ VALLKGR +YLCL + E AL + + Sbjct: 310 IISTQTVQLQQQILEKEIPLLQKIMPFSFEVALLKGRKHYLCLHKFE-YALQEEEKNYDM 368 Query: 127 LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARK 186 + W QT GD W + S + G + CF +A+ Sbjct: 369 ALTKAKILVWLLQTETGDRDELNIPEGGKLLWNRICSDVHSPGGMQSNWFSRCFYQRAKN 428 Query: 187 KAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLS--- 243 KA+ AD+V+ NH L D +E F + +IFDEAH + + AS+ G+ S Sbjct: 429 KALFADIVITNHALLFQDFSSEEPLFA----SCEHIIFDEAHHIEEAASRTLGEQFSCMY 484 Query: 244 ----------------SRQLLDLAKDITIAYRTELK----DTQQLQKCADRLAQSAQDF- 282 ++ + K A R+ + ++L+ AD L Q + F Sbjct: 485 FQLVLSRLGTLETDDVLSKVYKMMKKSEQASRSTFRMVSHSLKELKFDADELFQMLRAFI 544 Query: 283 -RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELC----YDVAKLSLGRSA---LLDA 334 + E G N ++++ L D EL YD+ KL +L + Sbjct: 545 FKQTKQEQGISNMPLIYRYNTEVEKG-KLWDSITELTNRFVYDIRKLLTTLEKQVDILQS 603 Query: 335 AFERAT-----LYRTRLKRLKEINQP---------GYSYWYECTSR----HFTLALTPLS 376 E + ++ L+++ Q Y W E ++ L P+ Sbjct: 604 KIEWEMHVVTGEFMHLIELLRKMAQALQLLILEKNSYVTWMETETKGTIHSTVLYGQPVH 663 Query: 377 VADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA--ESLLLPSPFDYSRQALL 434 +A++F + + S IFTSATL+VND + LG+ +L +PSPF + Q L Sbjct: 664 IAERFADEFLTEKKSVIFTSATLTVNDSFAYIKEELGLHDFAPNTLQVPSPFRFEEQMKL 723 Query: 435 CVLRNLPQT---NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP 491 V ++P + ++ + I +A GR +L TS+ M+++ + L Sbjct: 724 MVSTDVPFIKKASNEEYIESVSTHIAKIAKATKGRMLVLFTSYEMLKEAYTNLKNDEELE 783 Query: 492 ---VLLQGET--SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPD 546 +L Q S+ +L+++F ++L+ TSSFWEG+D+ GD LS ++I +LPFT P Sbjct: 784 GYLLLTQSVNNKSRSRLIRKFQEFDKSILLGTSSFWEGIDIPGDALSCLVIVRLPFTPPY 843 Query: 547 DPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPY 606 P+++A+ E + +G D F ++ LP A++ KQG GRLIR + D G + + D RL Y Sbjct: 844 QPMIEAKGEWLKNQGEDVFAKLALPQAILRFKQGFGRLIRTSTDTGTVFVLDRRLTSSSY 903 Query: 607 GATFLASLPPAP 618 G FL S+P P Sbjct: 904 GKYFLQSIPTVP 915 >UniRef50_Q73L75 ATP-dependent helicase, DinG family n=3 Tax=Treponema RepID=Q73L75_TREDE Length = 709 Score = 531 bits (1369), Expect = e-149, Method: Composition-based stats. Identities = 186/668 (27%), Positives = 318/668 (47%), Gaps = 56/668 (8%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 ++ DG LA ++ REPQ + ++ + + V EAGTG GK+ AYL PA+ Sbjct: 22 VSSLLEEDGPLASFFERYEAREPQLALTKSICRCFNEEAIGVFEAGTGVGKSLAYLLPAM 81 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTG---NVALLKGRSNYLCLERLE 113 + KK+V+ISTG+ LQ QL +D+ T K L L+KGR N+LCL R+ Sbjct: 82 MWAKQNKKRVVISTGTINLQQQLIEKDVLTAKKILGKGFQDMKACLVKGRHNFLCLRRMT 141 Query: 114 QQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDC 173 Q AL D + ++ ++ W+ +T DG S + W V S DNC + C Sbjct: 142 Q-ALRENDFFTEGQEELDKIKEWATETKDGSRSDL-DFMPTEKVWSTVCSEPDNCPMNKC 199 Query: 174 PMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG----ELIPEADVMIFDEAHQ 229 P + CFV+K +++A ++ ++V NHH+ AD+ V+ GFG ++P D +I DEAH Sbjct: 200 PYFSGCFVMKLKREAENSSILVANHHILFADLSVRAEGFGYQGTAVLPSYDNIIIDEAHG 259 Query: 230 LPDIASQYFGQSLSSRQLLDLAKDITIAYRTE-----------LKDTQQLQKCADRLAQS 278 + D A +F +S L + R + K + + + L + Sbjct: 260 IEDAAQSFFSSDISRFALHKQINLLYRFRRGKQAGILSGIVSISKKAELFTEIINLLEVA 319 Query: 279 AQDFR------LQLGEPGYRGNLRELLANPQ------IQRAFLLLDDTLELCYDVAKLSL 326 A F LQ+ + +L + ++ + + F +++ ++ + Sbjct: 320 AASFNILEEQALQVLQTYQSKSLAQTSSDEKEKLLSCVDNFFKNINNLNIKLENLINAAD 379 Query: 327 GRSALLDAAFERATLYRTRLKRLKEINQ--------PGYSYWYE----CTSRHFTLALTP 374 G + + RLK++ + + P +W+E TP Sbjct: 380 GEEDE-EGYIREGLVVLRRLKKMASVMENFLNSSEFPNDVFWFEKIKTSQGEAVRFIQTP 438 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLL-----PSPFDYS 429 L++A + + + I SATL + DD + + +R G+ + PSPF Y Sbjct: 439 LNLAPIMRRSVFMPMATVICVSATLKIGDDFNFWLNRNGLYNFTEKKIIKDFFPSPFPYE 498 Query: 430 RQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT 489 + + + ++P ++ + + ++E G+ +L TS+ ++ E R + Sbjct: 499 KNVVFNIPTDMPMPDENNFQDAVNETVLALLEITQGKTLILFTSYDSLQKTCEYVREHID 558 Query: 490 --LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 + +L QGE + QLL +F + L ATSSFW GVDV G++LS VI+ KLPF P + Sbjct: 559 EKIKILKQGEADRMQLLYEFKDDVTSCLFATSSFWAGVDVPGESLSHVILVKLPFAVPTE 618 Query: 548 PLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 P+ KAR + GG+ F ++ +P+AV+ +QG GRL+R DRG++ + D R++++ YG Sbjct: 619 PIFKARADLIEKSGGNSFMQLSVPEAVVQFRQGFGRLMRSNTDRGIVTVLDKRILVKRYG 678 Query: 608 ATFLASLP 615 + F+ S+P Sbjct: 679 SIFIQSIP 686 >UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI Length = 934 Score = 530 bits (1366), Expect = e-149, Method: Composition-based stats. Identities = 207/673 (30%), Positives = 314/673 (46%), Gaps = 71/673 (10%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKV 66 L A P ++ R Q M AV Q+ + +VEAGTGTGKT YL PA+ + +V Sbjct: 250 LKNAFPDYELRPGQLAMMDAVYQSFLNNEHTLVEAGTGTGKTLGYLLPAIIFARQEGARV 309 Query: 67 IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQI 126 +IST + LQ+QL S+DLP + K L + N LLKGR +YL L R EQ D Sbjct: 310 LISTYTVQLQEQLLSKDLPLLEKLLGFPANAVLLKGRKHYLSLARFEQSLNEADDNYDTT 369 Query: 127 LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARK 186 L+ + +L W +T GD+ + + W + D+ S+ F +ARK Sbjct: 370 LTKMQIL-VWLTETATGDVDELNLSSGGAVFWNKI-QNGDSKFISESGWKSRDFYNRARK 427 Query: 187 KAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQ 246 A +AD+++ NH + L + SG ++ P D + DE HQ A ++FG S+ Sbjct: 428 SAENADLIITNHAMLLNSL----SGENQIFPSYDYAVIDEGHQFSKAAGKHFGFSIDYLS 483 Query: 247 LLDLAKDITIAYRTEL-----------------KDTQQLQKCADRLAQSAQDFRLQLGEP 289 L L I + + +L +L + L +F +G Sbjct: 484 LRLLLGKIGLYDQKQLLYKLERLLEGRAAMDGAAHPFELNRLVADLQYEMDEFFKLVGIY 543 Query: 290 GYRGNLRELLANPQIQ--------------------------RAFLLLDDTLELCYDVA- 322 G R A+ +I L+D L+L + Sbjct: 544 GKRKLKARKYASSKISFRLTDITPRDFKAVEASAERFSFLVLDLISALEDRLQLLVPLTG 603 Query: 323 KLSLGRSALLD---AAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF----TLALTPL 375 +L+ G ALL+ A R +++ Q + W E R T+ P+ Sbjct: 604 ELAPGDQALLEEISACIGELRDVRESIRKTIFAGQTACAVWVELDGRAMQNATTVYSQPI 663 Query: 376 SVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA--ESLLLPSPFDYSRQAL 433 +VA ++ + S + TSATLSV + LG+++ ++ L+ SPFDY+ Q Sbjct: 664 TVAGNLRDGFFNQKKSAVITSATLSVGQSFDYIMDELGLDRFSCQTELIESPFDYASQVR 723 Query: 434 LCVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT--- 487 L V +LP+ N + + + EA NGR +L TSH M+R E + + Sbjct: 724 LAVPSDLPEINSVPLEEYVSAITEHIISLAEAANGRMLILFTSHDMLRRTYELVKESGFL 783 Query: 488 MTLPVLLQGETS--KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSP 545 ++ QG TS + +L + F ++L TSSFWEGVD+ G+ LS +++ +LPF+ P Sbjct: 784 EEYVLIAQGITSGSRTRLTRNFQRFDKSILFGTSSFWEGVDIPGEDLSCLVMVRLPFSPP 843 Query: 546 DDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRP 605 D+PL +AR E + RGG PF E LP+AV+ KQGVGRLIR +DRG++++ D R+V Sbjct: 844 DEPLGEARKEAIQSRGGRPFSEHALPEAVLRFKQGVGRLIRTKNDRGIIIVFDRRIVTAS 903 Query: 606 YGATFLASLPPAP 618 YG FL S+P P Sbjct: 904 YGRAFLDSIPSIP 916 >UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (DnaQ-like) (DinG-like helicase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES4_9BACT Length = 960 Score = 523 bits (1346), Expect = e-146, Method: Composition-based stats. Identities = 207/683 (30%), Positives = 302/683 (44%), Gaps = 72/683 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + FA DG A P F+ R Q MA V A K LVVEAGTG GK++AYL PA+ Sbjct: 255 IPEVFAEDGIFASKFPNFEFRSGQMTMAEEVADAFSKQDFLVVEAGTGVGKSFAYLVPAI 314 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 R K KVI+ST +K LQ+QL+ +DLP + K L L+KGR NY+C R ++ Sbjct: 315 DFSNRNKSKVIVSTNTKNLQEQLFFKDLPQLKKILPLPFQAVLVKGRENYICERRWQELL 374 Query: 117 LAGGD-LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQ--AWPLVTSTNDNCLGSDC 173 + ++ L W T GD+S S ++ W + S C G C Sbjct: 375 QEQTRGITSYDAYGLLNLLVWKEHTNTGDVSENSSFDKNRFGVLWHKICSDRYLCGGRKC 434 Query: 174 PMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDI 233 P+++ C+V+K RK A +VV NH L LAD + S G E ++ DEAH L Sbjct: 435 PLFQSCYVMKLRKNIETASIVVANHSLLLADAQMDNSTLG----EYQYLVIDEAHNLMSA 490 Query: 234 ASQYFGQSLSSRQLLDLAKDITIAYRTELKD-----TQQLQK------------------ 270 AS+ G +LS L L + R Q LQK Sbjct: 491 ASKNLGFTLSYVDLNSLFNQLVYTSRKYSGGFLSQIIQTLQKSMLTTDQKTHIETLCTKL 550 Query: 271 ---------CADRLAQSAQDF--------RLQLGEPGYRGNLRELL-----ANPQIQRAF 308 +L A+D +L++ + ++ LL A I + Sbjct: 551 TGEIDSQRQVITKLFSLAEDHCVEAKSYNKLRIKDINAFEDIYTLLKELSLAFKDIMKDL 610 Query: 309 LLLDDTLELCYDVA-KLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH 367 LD+ K L R + +L + Y+ W E Sbjct: 611 TALDNVFSTLNSNQVKDLDVLKDNLKGYLSRYMETEEIILQLLNPDLDNYALWIENDPNS 670 Query: 368 ------FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-----Q 416 T P+ V + L+ Q IFTSATLS+ F ++ G+ Sbjct: 671 ERNVPISTFCYAPVEVGEHLNRLLYQNIPCIIFTSATLSIRGSFKFFLNQSGLSLVTEKN 730 Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 ++ SPFDY +Q+LL + LP+ Q L I+ N L TS+ Sbjct: 731 VRQSIVESPFDYDKQSLLLIGSFLPEYKDKFFQSQALGCLEQILTTTNVGTMALFTSYKD 790 Query: 477 MRDLAEQFRA---TMTLPVLLQGET-SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTL 532 + + + + P QG+ S+ LL +F + NA+L+ TSSFWEGVD++GD+L Sbjct: 791 LDAVYDHLSDTLFHLNRPFFAQGKGVSRNSLLDEFKKSKNAVLLGTSSFWEGVDIQGDSL 850 Query: 533 SLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRG 592 SL+I+ K+PF P +PL++A ++ D F + LP+A++ L+QG GRLIR DRG Sbjct: 851 SLLILYKIPFQVPSEPLVEALIDKLERENKDSFMHLMLPNALLRLRQGFGRLIRSKTDRG 910 Query: 593 VLVICDNRLVMRPYGATFLASLP 615 V++I D+R+ + YG F LP Sbjct: 911 VVLIMDSRVSKKKYGIYFKQILP 933 >UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria RepID=C8WX41_ALIAD Length = 952 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 196/700 (28%), Positives = 331/700 (47%), Gaps = 72/700 (10%) Query: 3 DDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA--- 59 D P G LA ++ GF+ R Q M AV QA+ +G+ +VEAGTGTGK+ AYL PA Sbjct: 247 DMLMPGGPLAASLRGFEARPGQLAMVEAVAQALAEGKHAMVEAGTGTGKSLAYLVPAALI 306 Query: 60 -LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE-QQAL 117 + + V++ST + +LQDQ+ RD P + + + + KGR+NY+CL ++ + L Sbjct: 307 AMATGEPVVVSTHTLSLQDQIAERDFPLLRRIFGDELRLVVQKGRNNYVCLRKVRSEARL 366 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 + PV+ + ++ L W +T DG T + W V S +++C+ CP ++ Sbjct: 367 STMATPVEDIQGIMALLVWLTETPDGTRETLSKSSVGPGLWARVQSESESCINRRCPFFQ 426 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 C+ + ++ A A ++V NH L ++D+ ++P+ + ++ DEAH L + A+ + Sbjct: 427 PCYYFRTKQAAQAAHLIVTNHSLVMSDLASDHR----VLPKYEHLVVDEAHHLEEQATNH 482 Query: 238 FGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLA------QSAQDFRLQLGEPGY 291 G + S + LA + R ++ + + L +S ++ + +G G Sbjct: 483 LGFEVQSGVMAALAHRLVRD-RGRAGVLAEVVRMLEELDIRGTTLESLEEGKEWVGTLGA 541 Query: 292 R----------------------GNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRS 329 G R+ + + A ++ D+ + Sbjct: 542 EVDAAFQAIAAYVPAGQSEARLDGAWRQTESFHAYREALDRTQAGVKRLQDLRARLVDLV 601 Query: 330 ALLDA---------AFERATLYRTRLKRLKEI--NQPGYSYWYECTSR----HFTLALTP 374 L + A + + R++E+ P W E + ++ P Sbjct: 602 KSLPSDDHVGRVVDAAGFLGSWLDGIARMQEVLDEHPDDVTWAEVQTGGSRVRVSVHRAP 661 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ------AESLLLPSPFDY 428 + VA K+ + S + TSATL+VN + +LG+E+ + +PSPF Sbjct: 662 VDVARVLKQHLFDPLRSVVLTSATLAVNGEFGFAIRKLGLEEHAREDRVIARTVPSPFAM 721 Query: 429 SRQALLCVLRNLPQTNQPGSA---RQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR 485 +QA L V ++P L A + + EA+ GR +L TSHA++R+ A R Sbjct: 722 DKQARLFVPSDVPDIAAAPPEEAATWLTASITDLAEASRGRMLVLFTSHALLRETARLAR 781 Query: 486 ATM---TLPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLP 541 A + L +L Q + S+ LL+ F + +++ +FWEG+D+ GD L+ ++I +LP Sbjct: 782 APLAERGLSLLAQDLDGSRAALLEAFRAHPESVMFGAQTFWEGIDLPGDQLTSLVIVRLP 841 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 F P P+ AR+E G + F + LP+AV+ +QGVGRLIR DRGV+V+ D R+ Sbjct: 842 FAPPTHPVTAARLERLEASGQNAFRALSLPEAVVRFRQGVGRLIRTQQDRGVIVVFDKRI 901 Query: 602 VMRPYGATFLASLPPA-PRT---RDI-ARAVRFLA-IPSS 635 V + YG+ F S+P PR RD+ A +FL PSS Sbjct: 902 VTQRYGSMFWKSIPGLRPRVVPERDLVAEVRKFLRDTPSS 941 >UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus RepID=Q5WGA7_BACSK Length = 942 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 198/682 (29%), Positives = 305/682 (44%), Gaps = 69/682 (10%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP--- 58 + F+ G +A+ F+ R Q+QM V A E+ ++EAGTGTGKT AYL P Sbjct: 244 DELFSSSGAIARVFDSFEDRPGQKQMMKEVYAAFEEHAHALIEAGTGTGKTLAYLVPSAY 303 Query: 59 -ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL 117 A KK V++ST + LQ+QL RDL ++ + + A+LKGRS+YL L + EQ Sbjct: 304 FAYSKKKPVVLSTYTIPLQEQLLQRDLRLLASIVPFPLRTAVLKGRSHYLDLRKFEQALQ 363 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 + + L W +T GD+ WP+V S ++ LG P + Sbjct: 364 QLENDSYDVCLTKAQLLVWLLETDYGDVEELNLTTGGRSFWPMVQSDPESDLGKYNPWFS 423 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 CF ++R++A AD+++ NH L L D+V S ++P + DEAH + AS Y Sbjct: 424 RCFYHRSRRQAKKADLIITNHALLLTDVVQTHS----VLPSYSHAVIDEAHHFQEAASAY 479 Query: 238 FGQSLS----SRQLLDLAKDI------------------TIAYRTELKDTQQLQKCADRL 275 FG + S S + + D +A + + ++ D L Sbjct: 480 FGLTASFLSVSFAIQRIGDDHHEYGAIARLETLGEQMKQPLALDDAKEGLVRFREDTDEL 539 Query: 276 AQSAQDFRLQLGEP---------------GYRGNLRELLAN---------PQIQRAFLLL 311 + F L E G L + + Q+ A Sbjct: 540 FRMIHVFALDAQESNATDVGRISYVYKSFSEEGMLWQAILECAMRLQLHGEQVLAALKAA 599 Query: 312 DDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFT-- 369 +E + S A A L L Y YW E + Sbjct: 600 YQVVEEKVEAEYESRSLLADTQGAIAAFEETVQLLYELLLEYDDNYVYWIEVEPKGAKNA 659 Query: 370 --LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPSP 425 L P+ V+++ + K S + TSATL+VN + RLG+ ++ + SP Sbjct: 660 TYLYAKPIEVSERLADQFFAKKKSVVLTSATLTVNQSFDYQIDRLGLVDFGVKTKQIESP 719 Query: 426 FDYSRQALLCVLRNLPQ---TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA- 481 F Y++QA L + ++P + A+ +A + I E + +L TS+ M++ + Sbjct: 720 FSYAQQAKLLIPYDIPDVRGPDDELFAQDIAIKIWRITEVMQRKALVLFTSYDMLKKVFY 779 Query: 482 --EQFRATMTLPVLLQGETS--KGQLLQQFVSAGN-ALLVATSSFWEGVDVRGDTLSLVI 536 + L ++ QG TS + +LL+ F A A+L T+SFWEG+D+ G+ L +I Sbjct: 780 YVKDLNDEGKLALIGQGVTSGSRMRLLKLFKQAEQRAVLFGTNSFWEGIDLPGNELECLI 839 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 I +LPF P+ PL +A+ME + G +PF ++ LP AVI KQG GRLIR DRG++ + Sbjct: 840 IVRLPFAPPNLPLNRAQMERAKAEGKNPFTDLALPQAVIRFKQGFGRLIRTKGDRGLIFV 899 Query: 597 CDNRLVMRPYGATFLASLPPAP 618 D R+V YG TF+ SLP P Sbjct: 900 FDRRIVTTRYGRTFIDSLPDVP 921 >UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0D2_9BACT Length = 965 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 201/685 (29%), Positives = 318/685 (46%), Gaps = 69/685 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + F DG + + + G++ RE Q QM AV ++ G LVVEAGTG GK+ AYL PA+ Sbjct: 268 IESLFGTDGPIGRELRGYEVREQQLQMLRAVGDSLMGGVHLVVEAGTGVGKSLAYLTPAV 327 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 ++V++ST +K LQ+QL+ +D+P + + L +VALLKGR NY+C R Q Sbjct: 328 YFAVENGERVVVSTNTKNLQEQLFLKDVPFLERVLDIDFSVALLKGRGNYICQARWRQVL 387 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 G L S ++ + W +T GDIS + + W +++ CLG CPM Sbjct: 388 EKG--LSSSERSQLLPVALWEQETRSGDISENAAFRQYGYVWNRISADGGPCLGQKCPMR 445 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 + C+++KARK + A +V+VNH L +D ++ E +I DEAH + +A++ Sbjct: 446 ETCYLLKARKASQAAHLVIVNHSLLFSDTEADNR----ILGEYSYLICDEAHNMEQVATE 501 Query: 237 YFGQSLS---SRQLLDLAKDITIAYRTELKD------------TQQLQKCADRLAQ---- 277 + G+ + +R +LD +L + + +RLA Sbjct: 502 HLGKRSNVWRARAMLDNLYRNEGGPSGDLGEVMGALSGTDGALLESATAGVERLASDVTA 561 Query: 278 ------------SAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLS 325 +A+ L G G LR P L L VA+ + Sbjct: 562 ASAAVETFFTALAARHIDLNDGREVEFGKLRYRQEAPVSALLEEELAGVLAALSTVARGA 621 Query: 326 LGRSALL-DAAFERAT--------------LYRTRLKRLKEINQPGYSYWYE-CTSRHF- 368 + L+ D+ +RA + L+ + E PG +W + T R Sbjct: 622 ESVADLITDSELDRAESFVQNLTFHAARVREFAADLEYVAEAADPGSVFWLDVRTFRDVF 681 Query: 369 --TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-----QAESLL 421 L P+SVA+ + + + S I TSAT++V+ R+G++ + +L Sbjct: 682 ECELRSAPVSVAEMMGDFLYSRVDSLIATSATMTVDGSFDFVMERMGLDLIPDWKVLTLD 741 Query: 422 LPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 + SP+DY Q++ V LPQ + G + ++ ++ + E G +L T+ + + + Sbjct: 742 VGSPYDYDAQSIAVVAGYLPQPSSSGFNQTVSRLVVKLAERAQGGTLVLFTARSALDAVF 801 Query: 482 EQFRATMTLP---VLLQGETS-KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 + +T VL QG LL+QF +++L+ATSSFWEGVDV G +L ++I Sbjct: 802 KSVLDPLTSRGKLVLAQGHGGASSALLEQFAREVDSVLLATSSFWEGVDVPGRSLEQLVI 861 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 KLPF P DP+++A E G + F +P I L+QG GRLIR D G ++ Sbjct: 862 VKLPFPVPRDPVVEAHCERYEADGENSFGRYMIPRTAIRLRQGFGRLIRSTTDSGAVIFL 921 Query: 598 DNRLVMRPYGATFLASLPPAPRTRD 622 D+RL R YG L LP D Sbjct: 922 DSRLSTRAYGERLLEQLPTRTVIAD 946 >UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67NP5_SYMTH Length = 958 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 207/691 (29%), Positives = 309/691 (44%), Gaps = 84/691 (12%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR--- 61 G +++AI ++ R Q ++A AVT++ G L++EAGTGTGK+ AYL PA Sbjct: 246 LGSGGAISEAIAHYEHRPQQLELAEAVTRSFNDGAHLLMEAGTGTGKSLAYLVPAFAWAR 305 Query: 62 -AKKKVIISTGSKALQDQLYSRDLPTVSKALKYT----GNVALLKGRSNYLCLERLEQQA 116 +KV IST + LQ+QL+ +D+P + AL T AL+KGRSNY+CL + E+ A Sbjct: 306 ANGEKVAISTHTITLQEQLWEKDIPFLQSALAGTPLEGVEAALVKGRSNYICLRKWEEAA 365 Query: 117 LAGGDLPV-QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 + L + +I L +W +T GD S E+ + W V S + CLG C Sbjct: 366 VGADFLTSPEERRFLIRLAAWLAETETGDRSELNLSGEEERFWRTVQSETETCLGPKCKW 425 Query: 176 YKD-CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIA 234 ++ CF +AR++A DA V+V+NH L AD+ +++P +I DEAH L +A Sbjct: 426 FRSHCFAFRARRRARDAQVLVLNHALLFADIAAGN----QVLPPFRHLIIDEAHHLEAVA 481 Query: 235 SQYFGQSLSS----RQLLDLAKDITIAYRTELKDT------------------------- 265 +Q G +L S LL L + +L+ Sbjct: 482 TQNLGVNLESWDITGALLLLYRAPGQGLLPQLRRRLGRGEAIPARPPVGLPSEDLIDKLV 541 Query: 266 ---QQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA--FLLLDDTLELCYD 320 Q + D L + D G G R L ++ + L+ Sbjct: 542 GLVQHCRAATDELFRLCADLVEARGRSEEEGGARALRLTDAVRTGPLWEALEQARANAVH 601 Query: 321 VAK---------------------LSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359 + + + + R+ G Sbjct: 602 RLRTLAAGLALLAEALELQDPPLADADALLVDIQKQNGILIQSTKAIDRVLLEPAEGEVT 661 Query: 360 WYECTSR----HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI- 414 W E R L P++V D + + + S I TSATL+V + H RLG+ Sbjct: 662 WIESAQRGDRLRVALRAAPINVGDILRADLFGRMRSVIMTSATLTVGESFAHLKERLGLS 721 Query: 415 ----EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFML 470 ++ +L SPF Y QALL V +LP + + LR + GR +L Sbjct: 722 RLPPDRLREGVLSSPFAYREQALLLVPEDLPNPKEGDFTQAAVDFLRRFLIQAGGRTLVL 781 Query: 471 CTSHAMMRDLAEQFRATMTLPVLLQGET----SKGQLLQQFVSAGNALLVATSSFWEGVD 526 TSH +R + + + + LL S+ +L+ +F + +L ++SFWEGVD Sbjct: 782 FTSHRQLRQVYQALKDDLEAEGLLLLGQGLDGSRSRLVAEFRAGERTVLFGSASFWEGVD 841 Query: 527 VRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIR 586 + G+ LS V++ +LPF PDDP+++AR+ED RG F + LP AVI KQG GRLIR Sbjct: 842 IPGEGLSAVVMVRLPFNPPDDPVMEARIEDLERRGLSSFAHLSLPQAVIRFKQGFGRLIR 901 Query: 587 DADDRGVLVICDNRLVMR--PYGATFLASLP 615 DRGV+++ DNRL R YG FL SLP Sbjct: 902 TRGDRGVVIVLDNRLSPRGSRYGLQFLRSLP 932 >UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class) RepID=B9KXZ3_THERP Length = 982 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 208/714 (29%), Positives = 326/714 (45%), Gaps = 93/714 (13%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + P+G A+++PG++ R Q +MA AVT + +G L+VEAGTGTGK+ AYL PA+ Sbjct: 251 IGRLYGPEGPFARSLPGYEFRAGQVRMAQAVTNVLNQGGQLLVEAGTGTGKSLAYLLPAV 310 Query: 61 RA----KKKVIISTGSKALQDQLYSRDLPTVSKALKY------------TGNVALLKGRS 104 + V++ST + ALQDQL+++DLP + +AL+ +LKGRS Sbjct: 311 LHAVARGETVVVSTDTLALQDQLFAKDLPLLRRALEAAAEHDPRLADAARFRATVLKGRS 370 Query: 105 NYLCLER-LEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTS 163 NYLCL R +Q +L+ + +W QT GD + E+ AW V Sbjct: 371 NYLCLRRWFLRQREPFTSRAEALLAAK--ITAWLAQTETGDRAELHLSNEEQLAWAQVAE 428 Query: 164 TNDNCLGSDCPMYKD--CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADV 221 + CL S C ++ CF+ +AR A A +V+VNH L L+D++ + ++P Sbjct: 429 SEGACLPSRCLFHRRNQCFLYRARATAEGAHIVIVNHALLLSDLLAESR----VLPSYRH 484 Query: 222 MIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI--------------------------- 254 +I DEAH L D A+Q FG ++ + +L + + Sbjct: 485 LIIDEAHHLVDEATQQFGFQIAHEDMRELVRRVLGLDHLGRYTGVLGELWSVLAQRPDGS 544 Query: 255 -TIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYR---------------GNLREL 298 R + L + L Q + L E R G LR+ Sbjct: 545 ARAVARELGQRLTDLWPRVETLHQHTEMLFHLLAEVAQRHPVENGGYDRQIRITGALRQE 604 Query: 299 LANPQIQRAFLLLDDTLELCYDVAKLSLGRSA---------------LLDAAFERATLYR 343 ++ + L + R LD RA Sbjct: 605 TIWGTVEELGQTVTSHLRTVLSALQWVSHRLEDLPAAIRDELSELVTELDVLERRARELH 664 Query: 344 TRLKRLKEINQPGYSYWYECTSR--HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSV 401 RL+ + + YW ++ +L + PL VA +E++ + + + TSATL+V Sbjct: 665 GRLQEILFSPRVERVYWLTWRAQPLSVSLNMAPLDVAPLLQEMLFSRVDTLVLTSATLTV 724 Query: 402 NDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIE 461 + + +LG+ A+ L++ SPFDY+ LLC+ ++ + +PG RQ+ L ++ Sbjct: 725 DRSFDYIRQQLGLADADELVVESPFDYASSTLLCLAEDMAEPGEPGYQRQVNEALLALLR 784 Query: 462 ANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQG-ETSKGQLLQQFVSAGNALLVA 517 GR +L TSH+ ++ + + VL Q + S QL+++ + +++ Sbjct: 785 VTRGRALVLFTSHSALQAAYRAIKRPLEQEGILVLGQRLDGSPRQLVERLKARPATVVLG 844 Query: 518 TSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITL 577 T++ WEGVDV G+ LS+++I KLPF P DP+ AR E DPF E +P AV+ Sbjct: 845 TNAVWEGVDVPGEALSVLVIAKLPFAVPSDPVFAARCESYS----DPFQEYAVPQAVLRF 900 Query: 578 KQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 KQG GRLIR D GV V+ D R+ R YG F+ SLPP R + LA Sbjct: 901 KQGFGRLIRSTRDYGVCVVLDRRVTTRRYGQLFVQSLPPCTVKRVPVAQIPRLA 954 >UniRef50_C5VAL7 ATP-dependent helicase n=14 Tax=Corynebacterineae RepID=C5VAL7_9CORY Length = 681 Score = 514 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 198/664 (29%), Positives = 291/664 (43%), Gaps = 60/664 (9%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK----KVIISTGS 72 G R Q M AV A+E + L V+AGTGTGK+ AYL PA+ + VI+ST + Sbjct: 15 GGATRPGQVAMTEAVATALESERHLAVQAGTGTGKSLAYLVPAVAHAQETESTVIVSTAT 74 Query: 73 KALQDQLYSRDLPTVSK----ALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILS 128 ALQ QL RDLP +++ L + + A++KGR NYLC ++ Q D P + Sbjct: 75 IALQRQLVDRDLPRLAESLEPLLDHKPSFAIMKGRQNYLCQNKVAQATALEADDPNSGDA 134 Query: 129 D----------------------VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 D + + W+N+T GD + D AW V+ Sbjct: 135 DGNAGGAQTALVDESELSWLGRHMARIYEWANETETGDRDSLEPGVPD-LAWRQVSVGAK 193 Query: 167 NCLG-SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFD 225 C+G + CP CF AR+KA D DVVV NH L D ++ + ++P+ DV+I D Sbjct: 194 ECIGANRCPFGDSCFAELARRKARDVDVVVTNHALLAVDAMLDIN----VLPDHDVVIID 249 Query: 226 EAHQLPDIASQYFGQSL-------------------SSRQLLDLAKDITIAYRTELKD-T 265 EAH+L D + + +L+D+A++ + Sbjct: 250 EAHELDDRITSMATTEIGVTALNMSARRAGKLGAEGRDEKLIDVAREWEQVMMSIDPGRL 309 Query: 266 QQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLS 325 L + + QD QL + R E P+ L L + L +D Sbjct: 310 TTLPEVLRPTLVALQDGLWQLQQTIGRAPEGEAANEPERHAERLSLANHLTEQHDAVARI 369 Query: 326 LGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFT-LALTPLSVADKFKEL 384 L + + P W R T L + PLSV+D + Sbjct: 370 LSAFPAHPSLSPDDATSPEPATPPGSADAPEDVVWAVVDERRGTMLKVAPLSVSDLLRSR 429 Query: 385 MAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA--ESLLLPSPFDYSRQALLCVLRNLPQ 442 + + + TSATL++ + + + G+ + L +PFD ++ +L V R++P Sbjct: 430 LFDH-NTVVLTSATLTIGGNFNAMAASWGLPAGSWDHLDAGTPFDPAKSGILYVPRHVPF 488 Query: 443 TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQ 502 + G + + + +I A GR L +S E R + VL QG+ S G Sbjct: 489 PGRDGLHEKTLSEMYELIMAAGGRTLGLFSSRRAAEQATESLRRRLPFDVLCQGDDSMGA 548 Query: 503 LLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGG 562 L+ +F N L T + W+GVDV G + SLVI+DK+PF PDDPLL+AR E G Sbjct: 549 LVDRFAKQENTCLFGTLTLWQGVDVPGKSCSLVIMDKIPFPRPDDPLLQARKEAADAAGR 608 Query: 563 DPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD 622 + F EV A + + QG GRL+R DRGV+ I D RL+ + YG L SLPP RT D Sbjct: 609 NGFMEVAATHAALLMAQGAGRLLRHTTDRGVVAIMDKRLIEKRYGGFLLNSLPPFWRTTD 668 Query: 623 IARA 626 Sbjct: 669 PKVV 672 >UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH Length = 939 Score = 514 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 173/704 (24%), Positives = 305/704 (43%), Gaps = 74/704 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + G+L++ + ++ R Q++M+ + A ++EAGTGTGK+ AYL PA+ Sbjct: 240 LDTIYEDGGKLSEHLSMYEKRAGQQEMSETIYDAFTSSNHALIEAGTGTGKSLAYLLPAV 299 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 + +KVIIST + LQ QL ++P + ALLKG+++Y+ LE+ + Sbjct: 300 YYAVKQNQKVIISTHTTQLQSQLLEEEIPLIHAISDIPFQAALLKGKNHYISLEKFSIEL 359 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 G I +L W +T GD+ + +++ + + P + Sbjct: 360 YEQGQDNYDIALTKAMLLIWITETNTGDVEEVQLPTSGYIFFRKISADTEKAVNPQSPWF 419 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 + + +ARKKA A++++ NH L DM +P +I DEAH + A+ Sbjct: 420 QYSYYQQARKKAQRANIIITNHALLCTDMFND----YAFLPSYQRVIIDEAHHFEEQAAH 475 Query: 237 YFGQ------------SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDF-- 282 ++G L S + L + AY+ D L + D L + Q+ Sbjct: 476 HYGLKMDYMSMQFTCNQLGSSEEDKLFGNFVQAYQLSNSDIP-LYEWNDTLKSAKQEIED 534 Query: 283 -------------------------RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLEL 317 + ++ G+ +++ + + + D L Sbjct: 535 LFQAIYYYVSKQHLSNQALSDVGRIQYRMDTEKETGDSWQVILDMSSRLSLYFRDLIHIL 594 Query: 318 CYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEIN-------QPGYSYWYECTSR---- 366 +++ ++ + E + + + + + W E + Sbjct: 595 FMVEQRINQEDNSEKNHREELLQMVELLQRYIDGLELMFYSGGEVEQIKWIEIDKKGQNH 654 Query: 367 HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL--LLPS 424 L P VA+ + + S + TSATL++N RLG+ + + S Sbjct: 655 SVFLYSEPADVAELLENEFFHEKESVVMTSATLTMNHSFSFMQKRLGLSSHSCITEQIES 714 Query: 425 PFDYSRQALLCVLRNLPQT---NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 PF Y +Q + + + P N +A + + E +GR +L TS+ M+R Sbjct: 715 PFAYDQQVQMFIPNDFPDIKYGNIDDFVYAVAEAIISLAEITSGRMLVLFTSYDMLRKAY 774 Query: 482 EQFRATMT---LPVLLQGETS--KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 + M ++ QG TS + +L + F S A+L+ TSSFWEGVD+ GD LS ++ Sbjct: 775 YVLKEAMEKDKYMLIGQGITSGSRARLKKNFQSFDQAILLGTSSFWEGVDIPGDDLSSLV 834 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 I +LPF P+ P+++A+ + + +PF E+ LP+AVI KQG GRLIR ++DRG++ + Sbjct: 835 IVRLPFQPPNHPVIEAKSAMLKKQKQNPFMELSLPNAVIKFKQGFGRLIRSSNDRGIVFV 894 Query: 597 CDNRLVMRPYGATFLASLPPAPRTRD-----IARAVRFLAIPSS 635 CD R+V YG F S+P P D I +A ++ + Sbjct: 895 CDARIVNARYGKYFTESIPKVPIHYDSTHKLIDKAEQWYKKNDA 938 >UniRef50_B1ZV97 Helicase c2 n=2 Tax=Opitutaceae RepID=B1ZV97_OPITP Length = 698 Score = 511 bits (1317), Expect = e-143, Method: Composition-based stats. Identities = 207/679 (30%), Positives = 312/679 (45%), Gaps = 47/679 (6%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + FA G L A+ + R Q QM AV A PL+ EAGTG GK+ AYL P Sbjct: 24 VARVFAEGGWLQDALQ-LEHRPEQEQMGRAVAAAFRDDAPLLFEAGTGVGKSLAYLVPGI 82 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKY--------TGNVALLKGRSNYLC 108 A+ +++I+ST + +LQ+QL ++DLP + + +L G+SNYLC Sbjct: 83 LHAIDQSRQLIVSTHTISLQEQLETKDLPICRRLFRSNPALARYADFKATVLVGKSNYLC 142 Query: 109 LERLEQQALAGGDLPVQI-LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDN 167 RL L ++ + +W+ +T G + W +V + + + Sbjct: 143 TTRLAHALADRATLFADAEYDELQRIAAWAGKTETGLRHELRP-PPRPEVWDVVNADSSS 201 Query: 168 CLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLA-------DMVVKESGFGELIPEAD 220 C C + CF +AR + A+V+VVNH L A + ++ D Sbjct: 202 CSRKHCDC-EKCFYQRARARLRAANVIVVNHALLFALINAGGAQAHGATTDARGVLFPDD 260 Query: 221 VMIFDEAHQLPDIASQYFGQSLSSRQLLDLAK--------DITIAYRTELKDTQQLQKCA 272 ++ DEAH +PD+A++ FG SLSS + K + R + Q + Sbjct: 261 FVVLDEAHTVPDVATENFGLSLSSYGVERALKYLYNPRTQRGLLRKRGGAEAQQLVLDAL 320 Query: 273 DRLAQSAQDFRLQLGEPGYRGNLREL-LANPQIQRAFLLLDDTLELCYDVAKLSLGRSAL 331 D Q L P +RE A P + L L D R L Sbjct: 321 DASRQFFDFIANSLLTPRPVVRVREPEAAEPLLDGPLTALHRLLGKLADKLDEGRERDEL 380 Query: 332 LDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH---FTLALTPLSVADKFKELMAQK 388 L+ R + + + PG+ YW E + R TL P+ VA + ++ + Sbjct: 381 LEQKL-RIKSLQAGVTEWLTLGDPGHVYWAERSGRKQTIVTLRSAPIDVAPELRQHLFGC 439 Query: 389 PGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGS 448 S + TSATL++ ++ F +R+G + A ++ + SPFD+ + V ++P + + Sbjct: 440 NTSVVCTSATLAMGGEIAPFAARIGADDARAVAVKSPFDFEHHMRVYVATDVPLPSPQEA 499 Query: 449 ---ARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQG-ETSKG 501 L +R E G +L TS+A MR +A P ++QG E S+ Sbjct: 500 RLALDALTDYIRFCTERVRGGSLVLFTSYADMRAIATTLEPVYRAAGRPFMMQGAELSRT 559 Query: 502 QLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRG 561 +L QQ GNA+L T SFW GVDV GD L+ VII +LPF P P+ +AR + R RG Sbjct: 560 ELAQQMRHLGNAVLFGTDSFWTGVDVPGDALAQVIITRLPFDPPTHPITEARCDHIRDRG 619 Query: 562 GDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASL--PPAPR 619 G+PF+E+ LPDA+I +QGVGRLIR A DRG++ I D+R++ + YG F+ L P R Sbjct: 620 GNPFNELTLPDALIKFRQGVGRLIRTATDRGLITILDSRVLAKSYGRLFVECLPNPNFMR 679 Query: 620 TRDIARAVRF--LAIPSSR 636 R RF A P +R Sbjct: 680 LSRRDREERFLPFASPPAR 698 >UniRef50_D1AXI2 Helicase c2 n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AXI2_STRM9 Length = 667 Score = 511 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 183/648 (28%), Positives = 311/648 (47%), Gaps = 54/648 (8%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 F+ RE Q M+ + + I+ P+++EA TG+GKT YL PA+ K ++IST + Sbjct: 14 DFEKRENQINMSKIIKKGIDNDMPVLLEAETGSGKTLGYLIPAIDFALTEMKNIVISTNT 73 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 LQDQ+ +++LP + K L+KGR+NY+C +L+ + D L + + Sbjct: 74 LNLQDQILNKELPLLKKLFGEKMKYTLIKGRNNYVCKRKLQDLVMKSDDEKYMDLIEAV- 132 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 ++ GD S + W + S D+ + CP YK C+ +R K + Sbjct: 133 -----KASLTGDRSDIKYKISN-DLWNEIKSDKDSTFANKCPYYKSCYFYLSRSKNEHCN 186 Query: 193 VVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAK 252 + +VNHH+ L D ++K++ LIP+ D+++ DEAH L ++ +Y+ S S +++ + Sbjct: 187 IFIVNHHILLLDHIIKQNNNVGLIPKYDLIVIDEAHNLENVVRKYYSLSFSFKEVFKIIG 246 Query: 253 DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLAN-----PQIQRA 307 + ++++ + K +++++ F + + + N+ + +I R Sbjct: 247 MLYSNNVKDIENAGLIGKIIINISENSNHFLIDELKEIFFSNINNIYYALVELRKKIVRK 306 Query: 308 FLLLDDTLELCYDVAKLS-------------------------LGRSALLD--------- 333 + L+ L D+ L+ L LD Sbjct: 307 YTDLNQNGILTKDICDLNVNDLLEKIFSSNLILKKEVYRLINFLEERDELDKDNLRLFLS 366 Query: 334 AAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF--TLALTPLSVADKFKELMAQKPGS 391 +++ + L+ + E+N Y YW + + TP S++ +F E +K Sbjct: 367 SSYNNLEEHLNTLQEIFELNYEKYIYWMNLDIDNVFPIINATPYSISKEFGENFIEKIRK 426 Query: 392 WIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQ 451 I SATL+V + + + LGI + +PS FDY + + NLP N+ + Sbjct: 427 VILISATLTVGNSFRYIKNSLGIIDSVEENIPSEFDYLNNMNIYLPDNLPLPNEIDFNER 486 Query: 452 LAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA-TMTLPVLLQGETSKGQLLQQFVSA 510 + E NNG+CF+L TS+ ++ +A + +L VL+QGE +L++ F Sbjct: 487 ATKFILDYAEKNNGKCFVLFTSYKDLKFVANYLNKYSSSLNVLIQGEYEIIELIKMFKEK 546 Query: 511 GNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGD-PFDEVQ 569 N++L+ T SFWEGVDV+G+ LS VII KLPF PDDP++ + + F E Q Sbjct: 547 ENSILLGTYSFWEGVDVQGEALSNVIIFKLPFQVPDDPIVSSICYRLNELNSNSAFKEFQ 606 Query: 570 LPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPA 617 LP AV+ +KQGVGRLIR +D+G ++I D R+ + YG L SLP Sbjct: 607 LPYAVLKMKQGVGRLIRSKEDKGNIIILDKRIHKKSYGKIILKSLPKG 654 >UniRef50_C0QZ08 Helicase n=2 Tax=Brachyspira RepID=C0QZ08_BRAHW Length = 846 Score = 510 bits (1313), Expect = e-143, Method: Composition-based stats. Identities = 186/703 (26%), Positives = 312/703 (44%), Gaps = 80/703 (11%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL--- 60 F +G L++ + ++ R+ Q ++ A +A + L+ EAGTG GK++AYL PAL Sbjct: 135 MFTENGTLSQLLKKYEYRQEQTELVEATIEAFNNNKHLISEAGTGIGKSFAYLIPALLWL 194 Query: 61 -RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG 119 K +++IST + LQ+Q+ S+D+P++ + + AL+KGR+NY+C++++++ Sbjct: 195 KENKTRIVISTNTINLQEQIISKDIPSIIGGIAPSVKYALVKGRNNYVCIKKVKEGLNDH 254 Query: 120 GDLPVQI-LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 + ++ + W N T DG I+ + W +V D C C +D Sbjct: 255 DKFDFEEQINFFEDIDHWLNITKDGSITDL-GYKPKGELWEMVCCDTDTCTHRKCEYLED 313 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVV--KESGFGELIPEADVMIFDEAHQLPDIASQ 236 C+ K RK+ A +++VNHH+ AD+ + + +G L+P ++ DEAH + AS Sbjct: 314 CYFYKMRKQLNAAQLLIVNHHILCADLSLYAETAGRYSLLPRYTKVLIDEAHNFENSASS 373 Query: 237 YFGQSLSSRQLLD-----------------------LAKDITIAYRTELKDTQQLQKCAD 273 YFG S +L L + + + E + L A Sbjct: 374 YFGDEGSKNGILKALFYLSRIKKNKRLGVIESINNMLNEKRALIEKHEYDEILDLINKAH 433 Query: 274 RLAQSAQ--------DFRLQLGEPG---------YRGNLRELLANPQIQRAFLLLDDTL- 315 L + +F + +R + ++ + L + + Sbjct: 434 DLTSRVRNVVEDKSKEFITYCHKNIQTKEGLGYKFRISPELVMTSHWQNEGLKPLREMVL 493 Query: 316 ----------ELCYDVAKLSLGRSALLDAAFERATLYRTRLKR-------LKEINQPGYS 358 +L +++ + + + + Y RLKR + + Y Sbjct: 494 SMTSLVNICDKLYKKFFDIAIEKDFDYEEIAQMSNAYLERLKRQLVSLNAAIDYKKDEYI 553 Query: 359 YWYECT---SRHFTL--ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG 413 W E + L LTP++VA + + + + SATL+V+ + F++RLG Sbjct: 554 RWVETRLTKKGNLILNWHLTPVTVAKNLNDFLYSRFDTVAMYSATLTVSKSFNFFSNRLG 613 Query: 414 IEQAE-----SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCF 468 + E + L SPF+Y A L + ++P + +L + + GR F Sbjct: 614 FDFIEKNKKIEIYLESPFNYEDNARLYIATDMPDVASDTFNDFTSKVLLKVCDVTGGRAF 673 Query: 469 MLCTSHAMMRDLAEQFRATM---TLPVLLQGET-SKGQLLQQFVSAGNALLVATSSFWEG 524 +L TS + + ++ E + + L Q + + LL F ++ N +L SFWEG Sbjct: 674 ILFTSFSSLMNVYENTSEKLKSKNINALAQTASIHRHTLLDMFKASSNNVLYGVDSFWEG 733 Query: 525 VDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRL 584 VDV G L +VII KLPF P DP+ + R GG+ F + LP AVI KQG GRL Sbjct: 734 VDVAGKNLEVVIIPKLPFAVPTDPISEGRYRYIEENGGNAFLDYALPFAVIKFKQGFGRL 793 Query: 585 IRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAV 627 IR DDRGV+ + D RL + YG F+ SLP A R R + Sbjct: 794 IRSKDDRGVVFVLDKRLYTKTYGTQFIQSLPNAKVLRGSMREI 836 >UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus RepID=DING_BACSU Length = 931 Score = 509 bits (1312), Expect = e-142, Method: Composition-based stats. Identities = 186/668 (27%), Positives = 308/668 (46%), Gaps = 68/668 (10%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKK 65 L++ +PG++ R+ Q M V A + ++EA G GKT YL PA ++KK Sbjct: 249 ALSELMPGYEKRDGQMMMMREVADAFANREHALIEAPPGIGKTIGYLIPAALFAKKSKKP 308 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ 125 VIIST S LQ Q+ ++DLP V + A+LKG+S+YLCL + EQ D Sbjct: 309 VIISTYSTLLQQQILTKDLPIVQDLFPFPVTAAILKGQSHYLCLYKFEQVLHEEDDNYDA 368 Query: 126 ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKAR 185 +L+ LL W +T GD++ + W + +D+ S F +A+ Sbjct: 369 VLTKAQLL-VWLTETNTGDVAELNLPSGGKLLWDRLAYDDDSYKRSRSEHV-IGFYERAK 426 Query: 186 KKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSR 245 + AM +D+V+ NH L L D E + +PE+ I DEAH AS++ G+ + Sbjct: 427 QIAMRSDLVITNHSLLLTD----EGSHKKRLPESGTFIIDEAHHFERAASEHLGKRATYI 482 Query: 246 QL-LDLAKDITIAYRTELKDTQQL---------------------QKCADRLAQSAQDFR 283 +L L++ T+ + LK +QL Q +D S F Sbjct: 483 ELHTKLSRIGTLKEQGLLKKMRQLFQRNSLPVDSFFELEEWLQHVQAESDAFFSSVHSFV 542 Query: 284 LQLGEPGYRGNLRELLANPQIQRAFLLLDDTLE----LCYDVAKLSLGRSALLDA----- 334 + L + +++ +L D E + + +L +S+L++ Sbjct: 543 KRRKPKEDLNRLVFKVNKESQDKSWSILTDGAERLCSMLTHLQQLFEAQSSLMEKHLKGM 602 Query: 335 -------------AFERATLYRTRLKRLKEINQPGYSYWYECTSRH----FTLALTPLSV 377 + + Y L++L + + W E ++ + PL Sbjct: 603 KSKTVFLADEYQRSMKGLQHYCQTLQKLFFGSDDDEAVWIEIDAKGAKNAVAIYAQPLEP 662 Query: 378 ADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA--ESLLLPSPFDYSRQALLC 435 + + + S + TSATL+V RLG+ ++ + SPF Y + + Sbjct: 663 GELLADQFFARKNSVVLTSATLTVEGSFQFMIERLGLSDFFPRTMRIESPFSYDERMQVM 722 Query: 436 VLRNLP---QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---T 489 + + + T QP + A + + + + +L TSH M++ + ++ + M Sbjct: 723 IPKEMKSIQDTGQPEFIQDTARYIELMAKEKQPKILVLFTSHDMLKKVHQELKHNMSASG 782 Query: 490 LPVLLQGET--SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 + +L QG T S G+L++ F ++ A+L+ T+ FWEGVD GD L+ V+I +LPF SPD Sbjct: 783 IQLLAQGITGGSPGKLMKTFKTSNQAILLGTNHFWEGVDFPGDELTTVMIVRLPFRSPDH 842 Query: 548 PLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 PL A+ E R +G +PF V LP+AV+T +QG+GRL+R A D+G ++I D R+ YG Sbjct: 843 PLHAAKCELARKKGKNPFQTVSLPEAVLTFRQGIGRLLRSAGDKGTIIILDRRIKTAGYG 902 Query: 608 ATFLASLP 615 FL +LP Sbjct: 903 RLFLDALP 910 >UniRef50_B0S8U2 DNA helicase n=6 Tax=Leptospira RepID=B0S8U2_LEPBA Length = 661 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 182/639 (28%), Positives = 298/639 (46%), Gaps = 37/639 (5%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----LRAKKK 65 QL K ++ R+ Q +M+ A+ A + G V+EAGTG GK+ AYL P+ L + Sbjct: 10 QLPKLWKDYEVRKEQMEMSQAIESAFQTGSNWVIEAGTGVGKSLAYLIPSALFSLENECT 69 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ 125 V++ST +K+LQDQL +D+P VS+AL N + G +NYLC + + + GD + Sbjct: 70 VVVSTETKSLQDQLLYKDIPLVSEALGVPINAMVALGANNYLCKRKYNR-VMERGDFGPE 128 Query: 126 ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKAR 185 + S + +W QT G + +S W V +DNCLG +CP + + + Sbjct: 129 MESSLPYFVNWEKQTESGIRAEYDGFLSNS-FWSSVARESDNCLGRNCPNFSSSYYFLEK 187 Query: 186 KKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSR 245 K A++++VNHHL + + G +L+P ++ DEAH P+I + FG + Sbjct: 188 DKWKKANILIVNHHLLASHLA----GDFKLLPPFSQLVIDEAHVFPEIVGKAFGSEIRYE 243 Query: 246 QLLDLAKDITIAYRT-----ELKDTQQLQKCADRLAQSAQDFR--------LQLGEPGYR 292 +L+L + + +LK +++ K + A D LQ + R Sbjct: 244 FILNLLHYLYFPEKRTGLVLKLKSNEKIIKQIEASISYANDLFRMLLSAIPLQFNQFSSR 303 Query: 293 GNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSAL------LDAAFERATLYRTRL 346 R L N ++ L TLE K L+ + L Sbjct: 304 HTERIKLDNGALEDTLADLSSTLEGLLSKYKKDSDDMEEKELALGLEMVAGNLKKVSSFL 363 Query: 347 KRLKEINQPGYSYWYE-----CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSV 401 + P +W E + L P + + + S + TSATLS Sbjct: 364 TDFRLKTNPNLVFWIEPPPQMAKDPFYYLFSQPKNTDEILANTLFPNMDSVVLTSATLSP 423 Query: 402 -NDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQL--AAMLRP 458 + +F +G + ++ L SPF Y +LL V + + ++ + + Sbjct: 424 TAGNFQYFLKEVGTSEVKTKTLNSPFQYQTHSLLFVPKQIADPVSDPKRNKIDLSYWITR 483 Query: 459 IIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVAT 518 +++ + G F+L TS+ ++ +L E+ R + P+ Q E ++F++ N++L Sbjct: 484 LLKLSEGDAFVLFTSNKLLSELYEEIRNLVPYPIFAQTEMGPIAAKREFLANKNSVLFGV 543 Query: 519 SSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLK 578 SSFW+GVD++GD L VI+ KLPF P +P+L+A+MED +G PF E+Q+P + L+ Sbjct: 544 SSFWQGVDIKGDKLRNVIVTKLPFQVPTEPVLQAKMEDMEKKGKSPFWEMQVPKTCLLLR 603 Query: 579 QGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPA 617 QG GRLIR D G++ I D R+ + YG L SLP Sbjct: 604 QGFGRLIRSQSDTGMVSILDPRIHTKSYGKNVLQSLPKG 642 >UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus coagulans 36D1 RepID=C1PF24_BACCO Length = 930 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 179/687 (26%), Positives = 287/687 (41%), Gaps = 71/687 (10%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA-- 59 D + A + G + R Q +M V +A + + +EAGTG GK+ AYL PA Sbjct: 239 QDAVEKESWFAASGTGMEARPAQFEMMDHVREAFSVEEHVALEAGTGIGKSLAYLVPAAF 298 Query: 60 --LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL 117 + +K V+IST + AL+ QL ++++ + + LK LLKGRS+YL L + EQ +L Sbjct: 299 QAISEQKPVLISTYTVALEHQLLNKEIKRLEQMLKTPVRTVLLKGRSHYLHLFKFEQ-SL 357 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 D + + + W +T GD+ W + + D P Sbjct: 358 KEPDRQYDAVFAKMQILVWLTETESGDLDELHLSGGGKHFWQRIKQDGWHTDKKD-PWKS 416 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 F + A+ A AD+ V NH + A++ +S + +I DEAH+L A + Sbjct: 417 RDFYLYAKACAASADIAVTNHAMLCAELERDQS----VFDGFQYVIIDEAHRLEQAARET 472 Query: 238 FGQSLSSRQLLDLA-------------KDITIAYRTELKDTQQLQKC---ADRLAQSAQD 281 G+ S Q+ + K + + LK + +C L D Sbjct: 473 IGKRASYNQMKYMMARLGLYEQKQLFYKLEKVMEKYGLKASLHAFECDAILQALDAELDD 532 Query: 282 FRLQLGEPGYRGNL-------------RELLANPQIQRAFL--------------LLDDT 314 L + R N +E Q L L++ Sbjct: 533 LFGMLAQKVLRANRETNGYQKIKLRIKKENWKQKAWQAVLLCTERIRASMKEISQALEER 592 Query: 315 LELCYDVAKLSLGRSALLD---AAFERATLYRTRLKRLKEINQ-PGYSYWYECTSR---- 366 L ++ A ++ + E L R L N W E R Sbjct: 593 LSQLLSEKQMKEQALAFIEEMYSFLEDWRLLRDNLAIFAGQNGGDENVVWVEGDLRALPN 652 Query: 367 HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE-SLLLPSP 425 + P+ + ++ + S + TSATL+V +F G+ ++ +PSP Sbjct: 653 SLVIYCQPVHAGEILQKAFFSRKKSVVLTSATLTVGGSFRYFLDETGLAHTTKTVRIPSP 712 Query: 426 FDYSRQALLCVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 F + RQ + +LP A ++A L + EA GR +L TS +++++ Sbjct: 713 FRFDRQVQFIIPNDLPDIGSVSIEDFAEKMAGYLLAVAEATKGRMMILFTSFDLLKNVYH 772 Query: 483 QFRAT---MTLPVLLQG--ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 + + + QG S+ +L + F G A+L SSFWEGVD+ GD LS +++ Sbjct: 773 LMKESGMLEDYMFIAQGISSGSRSRLTKSFQKFGKAILFGLSSFWEGVDIPGDDLSCLVM 832 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 +LPF PD+P+ +A+ + R +G +PF LP+AV+ KQG GRLIR DRG+ ++ Sbjct: 833 ARLPFLPPDEPVTEAKSDYFRAKGKNPFSAYALPEAVLRFKQGFGRLIRTRHDRGIFLVL 892 Query: 598 DNRLVMRPYGATFLASLPPAPRTRDIA 624 D R+ YG F SLPP R R + Sbjct: 893 DRRIETATYGPAFTKSLPPV-RIRHLN 918 >UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2 Tax=Exiguobacterium RepID=B1YHQ6_EXIS2 Length = 937 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 190/673 (28%), Positives = 315/673 (46%), Gaps = 73/673 (10%) Query: 13 KAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----LRAKKKVII 68 + PG++PR Q +M V Q++++ PL+VEAGTGTGK+ YL PA + + +I+ Sbjct: 250 QLFPGYEPRTGQLEMMRHVYQSLDQETPLLVEAGTGTGKSLGYLVPAAHYAIEHETPIIV 309 Query: 69 STGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILS 128 ST + LQ+QL++RDLP + + + ++ LLKGRSNY+ L + E L+ + P Sbjct: 310 STHTIQLQEQLFARDLPLLRQLFEAPVDITLLKGRSNYMDLRKFE-FFLSETEEPYNFTL 368 Query: 129 DVILLRSWSNQTVDGDISTCVSVAEDSQ----AWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 +L W QT GD+ +Q L+ S + + LG P Y F A Sbjct: 369 AKAILLVWLTQTETGDLEEVSLPGGAAQGNIAIKQLIQSDSQSQLGRFDPWYSRDFFHHA 428 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 ++A A ++V NH L +D+ + ++P+ +I DEAHQ+ ++AS +FG Sbjct: 429 VRRAKQATIIVTNHALLFSDIQYE----AGVLPKGCPLILDEAHQIEEVASHHFGLVFDG 484 Query: 245 RQLLDLAKDITIAYRTEL------------------KDTQQLQKCADRLAQSAQDFRLQL 286 + + + + +L ++ + + +L + A + Sbjct: 485 HSFDRIFRQLGFSSDKKLLTRLISLSDQYDLTELVEAHSETIDETLTKLLEEADGLLTII 544 Query: 287 GEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAK--------LSLGRSALLDAAFER 338 G R+ ++ F LD ++ + AK L A+ ++ Sbjct: 545 QAYGLELASRKERREGRVTVRFKRLDQSMRAVQESAKRVELVLRRLRQAIRAIHKLFHDQ 604 Query: 339 ATLYRTR-----------LKRLKEINQ----------PGYSYWYECTSRHFTL---ALTP 374 R + +L+E+ Q W E T+++ L P Sbjct: 605 REHMSYRERSVVADLKTVIGQLEEVEQAIFETMLAPHDETVSWIETTAKNRKLTRIYTQP 664 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES--LLLPSPFDYSRQA 432 + ++++ + K + I TSATL+V++ RLG+ + E+ ++PSPF Y+ + Sbjct: 665 IDISNRLHREVFSK-RTCILTSATLTVSNKFQFIEQRLGLSELETRRFIVPSPFGYAEKV 723 Query: 433 LLCVLRNLP---QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT 489 L + +LP Q + +A + I E GR +L TS+ M+R + + + Sbjct: 724 RLMIPTDLPLLQDVPQATYSEVIADAIIRIAEVTEGRMLVLFTSNEMLRQTHDATKMALP 783 Query: 490 --LPVLLQG--ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSP 545 +L QG + S+ +L++QF +L T+SFWEGVDV GD LS ++I +LPF P Sbjct: 784 ERFTLLSQGITQGSRQRLMKQFKQLDACILFGTASFWEGVDVPGDDLSCLVIVRLPFAPP 843 Query: 546 DDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRP 605 D P+++AR E +G F E LP A+I KQG GRLIR +DRGV+ + D R+ Sbjct: 844 DQPIVQARSEQIEQQGKSSFFEYSLPQAIIRFKQGFGRLIRTTNDRGVVFVFDRRIETTR 903 Query: 606 YGATFLASLPPAP 618 YG F+ SLP P Sbjct: 904 YGKRFVTSLPNVP 916 >UniRef50_D0MD62 Helicase c2 n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD62_RHOM4 Length = 673 Score = 504 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 219/656 (33%), Positives = 323/656 (49%), Gaps = 48/656 (7%) Query: 16 PGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKAL 75 PGF+ R QRQMA V +AI +G P +EAGTGTGKT+ YL PAL A+ +V++ST +KAL Sbjct: 24 PGFELRPGQRQMAETVVRAIAEGLPAAIEAGTGTGKTFGYLIPALCAEARVLVSTSTKAL 83 Query: 76 QDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG--DLPVQILSDVILL 133 Q+QL +DLP + K L + ALLKGR NYLC ++E A L Sbjct: 84 QEQLVHKDLPLLGKLLDRPISWALLKGRQNYLCRLKIESGAQEERPVFETRDEAEAFRRL 143 Query: 134 RSWSNQT-VDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 W+ ++ DGD+ LVT D C G CP Y CF+++AR++A D Sbjct: 144 LEWARRSDTDGDLEQFPGRV-TPALRELVTMDADGCGGRQCPFYDTCFLMEARRRAERVD 202 Query: 193 VVVVNHHLFLADMVVKESGFGE--LIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 VVVVNH L L D++++ G L+PEA+V++ DEAH+L ++A +S ++ L Sbjct: 203 VVVVNHALLLQDLMLRARSGGALYLLPEAEVLVIDEAHRLEEMALGALSVYISPYRVERL 262 Query: 251 AKDITIAYRTELKDTQQLQKC---ADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA 307 + + + +L+ AD L + A L +L N + + Sbjct: 263 RRQALRLPGIDHRTRAELEALGLVADELKRQADTALAGRPAAPLTEALSVVLLNLRDRAG 322 Query: 308 FL--LLDDTLELCY------DVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359 L L+ T+ L +L A+L A +R + + Sbjct: 323 VLGDLVGQTMRLQLQRFGGSAQQELQARYEAVLRGLQRLAADAGVITERWRAQAAE-HVL 381 Query: 360 WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSV---------------NDD 404 + + RH + PL ++++ + + + TSATL+ + Sbjct: 382 YVQRERRHPVVICQPLDAGGTLQQVLFEAFPTVVCTSATLTTLAQPLRRRAAAGEASDGP 441 Query: 405 LHHFTSRLGI-EQAESLLLPSPFDYSRQALLCVLRNLPQ---------TNQPGSARQLAA 454 +F R G E+ L++P+PFDY RQALL + + + Q L Sbjct: 442 FAYFRRRTGFPEEGLELIVPAPFDYRRQALLYLPPDPARLDPTRIRDARTQQAYEEALIG 501 Query: 455 MLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNAL 514 ++ ++ A+ GR +L TS MM LAE + PVL+QG + +L++Q + ++ Sbjct: 502 EVQALVAASRGRALVLTTSLRMMERLAEALQE-CGYPVLVQGSAPRARLVRQLKAQA-SV 559 Query: 515 LVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAV 574 LVAT +FWEGVDV G+ LSLV+ID+LPF +DP +AR E G D F+ LP A+ Sbjct: 560 LVATRAFWEGVDVPGEALSLVVIDRLPFPGREDPYWQARYE---QAGDDWFELEALPQAL 616 Query: 575 ITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 +TLKQG GRLIR DRGV+ + D RL + YG L +LPPA R + I RF Sbjct: 617 LTLKQGFGRLIRTRTDRGVVALLDGRLQTKYYGRWILDALPPARRVQRIDEVTRFF 672 >UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, putative n=19 Tax=Listeria RepID=B8DC27_LISMH Length = 928 Score = 503 bits (1296), Expect = e-141, Method: Composition-based stats. Identities = 184/671 (27%), Positives = 292/671 (43%), Gaps = 65/671 (9%) Query: 20 PREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK----KVIISTGSKAL 75 R Q +M V QA++ G+ ++EAGTG GK+ Y PA+ K V+IST + L Sbjct: 260 ARSGQFEMMNLVFQAMKSGKHALIEAGTGIGKSLGYFLPAIYQAKQAELPVVISTYTNLL 319 Query: 76 QDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRS 135 Q QL+ +D+P ++K + +LLKGR +YL L + EQ L D ++ + L Sbjct: 320 QAQLFEKDVPLLTKLTGFKVKASLLKGRDHYLNLFKFEQ-LLQEVDTQYDVVVTKLKLLV 378 Query: 136 WSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVV 195 W +T GDI + W + T P F K+A +AD+V+ Sbjct: 379 WLTETTTGDIDEVNLSSGGELFWNRMKHTGWFLSEKHDPWLAHDFYKFNIKQAKNADLVI 438 Query: 196 VNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKD-- 253 VNH L L D E +P+ + DEAH D A LS R++ Sbjct: 439 VNHALLLNDHFSGR----ETLPKYAFAVIDEAHHFADSARMQGSFVLSYRKIKYFLNQLG 494 Query: 254 ---------ITIAYRTELKDTQQLQKCADRLAQSAQDFR--LQLGEPGYRGNLRELLANP 302 E L A +L+ + ++F L++ R NL+E++ Sbjct: 495 SLEKYSLLTRLAMAFPEADSLYDLDIAAMKLSDAVEEFFGLLKMQLNFARKNLQEVVLVE 554 Query: 303 QIQR------AFLLLDDTLELCYDVAK---------------LSLGRSALLDAAFERATL 341 ++ + + L L + K L SA L+ + Sbjct: 555 NSEKDAWNDQVYYAAEKVLYLLKESEKNMETLLEQGKREENELGEAESAFLEEMYAFLLD 614 Query: 342 YRTRLKRLKEINQ---PGYSYWYECTSRH----FTLALTPLSVADKFKELMAQKPGSWIF 394 ++ +K+L+++ P + + + H L + V + K S I Sbjct: 615 WQNMVKQLEQMLHKKSPILTIYLQADKNHSISSIRLKAVLMEVEPTLGKEFFAKKESVIM 674 Query: 395 TSATLSVNDDLHHFTSRLGIEQAE--SLLLPSPFDYSRQALLCVLRNLPQTNQ---PGSA 449 TSATL+V + LG+E+ + +PSPFDY A + + ++P Sbjct: 675 TSATLTVKGKFDYLRKSLGLEEEQIMEKRIPSPFDYKENARVMIPDDMPPIKDTPIERYT 734 Query: 450 RQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP---VLLQGET--SKGQLL 504 +LA +R I NGR +L T+ M++ + +L +L QG + S +L Sbjct: 735 SELAKYIRHIAVKTNGRMLVLFTASDMLQKTYYHMKNEKSLEEYVLLAQGVSAGSAARLT 794 Query: 505 QQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDP 564 +QF A+L+ T+SFWEG+D+ G+ LS ++I +LPF DDP KA++ + RG + Sbjct: 795 KQFQMFDKAILLGTTSFWEGIDIPGEDLSCLVIVRLPFAPMDDPYTKAQISLRKERGENA 854 Query: 565 FDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD-- 622 F LP+AV+ KQG GRLIR DRG++ + DNR+ +G FL S+P AP + Sbjct: 855 FQTYSLPEAVLRFKQGFGRLIRRESDRGIVFVFDNRVDTTKFGKAFLESIPSAPILKGKQ 914 Query: 623 ---IARAVRFL 630 + F Sbjct: 915 ADLLEEVSEFF 925 >UniRef50_A0YCJ4 Helicase c2 n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCJ4_9GAMM Length = 643 Score = 499 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 211/645 (32%), Positives = 313/645 (48%), Gaps = 29/645 (4%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 + A G + + P F RE Q+QMA+ V Q+I+ L+VEA +G+GKT AYL P + Sbjct: 8 DELLAAGGPIDRQWPEFVAREGQQQMAIRVQQSIDDQVSLLVEAPSGSGKTLAYLVPIVM 67 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLE-------RLEQ 114 ++ IIST S+ LQ QL+ DLP + L VALL+GRSNYLC RL Sbjct: 68 TAQRAIISTASRYLQSQLFKHDLPLIQGLLGSHRKVALLQGRSNYLCPYYLDKNTLRLRS 127 Query: 115 QALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCP 174 + + G Q + L T G++S ++ P VTS+ D+CL + CP Sbjct: 128 EQESSGGYDRQSYQQLTRLSQRFRNTGIGELS-LLAPELAPGLLPHVTSSRDDCLSTQCP 186 Query: 175 MYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIA 234 + C ++ AR++A AD+V+VNH L +D V+++ G L+P A V++ DEAH++ D A Sbjct: 187 DFSRCPLMAARQQAEGADIVIVNHSLLFSDQVMRKEQLGSLLPSAGVVVVDEAHRISDFA 246 Query: 235 SQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQL--GEPGYR 292 G LSS L L +D++ A + + + + ++L + +P +R Sbjct: 247 QTIVGLRLSSGTLKSLCRDVSRAIQVGAPEQRLILSRLEKLQSGLSKLDAHIPSAKPYHR 306 Query: 293 GNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEI 352 +++ I L D + D + + L L + RL EI Sbjct: 307 QQHVDVINQLSIALRQLRRDLNIVKQRDHSFVQLEIRTGL------------IVDRLNEI 354 Query: 353 NQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL 412 W + F + PL+++ KEL Q P SWIFTSATL+VN F L Sbjct: 355 VSYKGLCWVQGRENGFVIQTIPLTISLLIKELFQQSPCSWIFTSATLTVNSSPDRFKRVL 414 Query: 413 GIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCT 472 G++ S D+ RQA+L + + L P++ A GR L + Sbjct: 415 GLDAVNFYQASSDIDFQRQAMLYTPKIPVDPRKDEFYDYYVEQLLPLLAAAKGRVLCLFS 474 Query: 473 SHAMMRDLAEQFRATMTLPVLLQG------ETSKGQLLQQFVSAGNALLVATSSFWEGVD 526 S+ + A + R VL+Q +L+ Q + +L+AT SFWEGVD Sbjct: 475 SYRGLNATASRLR-RKGKAVLIQRSPRDPRRVDNYKLVAQLKNQPQGILLATGSFWEGVD 533 Query: 527 VRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIR 586 + G LS V IDKLPF DDPL++ R ++ G D F E LPDA++ L+QG GRL+R Sbjct: 534 LSGFPLSAVAIDKLPFAHRDDPLIQLRSQELSGHGVDSFSEYLLPDAIVRLRQGCGRLLR 593 Query: 587 DADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 DRGV++I D RL + YG F+ASLP R ++ F + Sbjct: 594 RVSDRGVIMIADPRLQSQAYGQDFMASLPSMRRAVTVSEIESFFS 638 >UniRef50_D0L9M3 Helicase c2 n=6 Tax=Actinomycetales RepID=D0L9M3_GORB4 Length = 699 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 210/681 (30%), Positives = 300/681 (44%), Gaps = 74/681 (10%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR----AKKKVIISTGS 72 G R+ Q MA AV AI+ G+ L V+AGTGTGK+ AYL PA+R + + V++ST + Sbjct: 19 GGARRDGQVTMASAVAHAIDTGEHLAVQAGTGTGKSLAYLVPAIRHAVDSGRTVVVSTAT 78 Query: 73 KALQDQLYSRDLPTVSKA----LKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV---- 124 ALQ QL RDLP ++ A L A+LKGR NYLCL ++ D + Sbjct: 79 IALQRQLIERDLPRLAGALKGPLGREPTFAILKGRGNYLCLNKIHAGTADEPDTELFDPF 138 Query: 125 ---QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG-SDCPMYKDCF 180 + +V LR WS+ T GD D +AW V+ T CLG ++C +DCF Sbjct: 139 ELSRTGREVTRLREWSSDTETGDRDDLTPGVND-RAWRQVSVTARECLGAANCSYGEDCF 197 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 AR+++ DVVV NH L + + ++PE DV+I DEAH+L D + Sbjct: 198 AEVARRRSAKVDVVVTNHALL----SIDATSPASILPEHDVVIIDEAHELVDRITSVSTA 253 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQD--FRLQLGEPGYRGNLREL 298 +S+ + LA+ E D L+ ++ + D R + P ++ Sbjct: 254 EVSAATIALLARRCGKLVDEETVDA--LEAAGEQFGELLADAPHRQWMSLPASAASVLVA 311 Query: 299 LANP--QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPG 356 L + Q + + + + A LD + E + Sbjct: 312 LRDRLWQTRTSIGPIRMSGAADESAAAARSAALTSLDELHDTIVRLLGAFDEPDESKRRD 371 Query: 357 YSYWYECTSRHF-------TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFT 409 + E + L + PLSV + + + + I TSATL++ Sbjct: 372 VVWVAEERTSRSPSADTRPVLHIAPLSVGGLLRATLFAQ-STVILTSATLAIGGSFDALA 430 Query: 410 SRLGIEQA---------------------------------------ESLLLPSPFDYSR 430 + G+ + L SPFDY R Sbjct: 431 ATWGLPASGRGADTPAVDAPAGAGANPVSDVTASGKAVPRDEQRVRWTGLDAGSPFDYPR 490 Query: 431 QALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTL 490 A+L V R+LP+ + G A + L +I+A GR L +S ++ AE R Sbjct: 491 SAILYVARHLPRPGRDGIAEKTMTELAELIDAAGGRTLGLFSSMRAAKEAAEAIRERCDH 550 Query: 491 PVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL 550 PVL QGE + L+++F L T S W+GVDV G +LSLV+ID++PF PDDPLL Sbjct: 551 PVLCQGEDTTSSLVRRFTEDPRTCLFGTLSLWQGVDVPGPSLSLVVIDRIPFPRPDDPLL 610 Query: 551 KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATF 610 AR RGG+ F V A + L QG GRL+R DDRGV+ + D RL YG Sbjct: 611 TARQRAVDARGGNGFLSVAANHAALLLAQGAGRLLRSVDDRGVVAVLDPRLATAGYGGYL 670 Query: 611 LASLPPAPRTRDIARAVRFLA 631 +ASLPP RT D A LA Sbjct: 671 MASLPPFWRTTDPATVRSALA 691 >UniRef50_C7QD23 Helicase c2 n=3 Tax=Actinomycetales RepID=C7QD23_CATAD Length = 706 Score = 497 bits (1280), Expect = e-139, Method: Composition-based stats. Identities = 209/697 (29%), Positives = 316/697 (45%), Gaps = 79/697 (11%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 TDD P A G + R Q MA AV +++ L+V+AGTGTGK+ AYL PAL Sbjct: 13 TDDLTPLLDAAVEALGGQTRPGQIAMAKAVAASLDDRVHLLVQAGTGTGKSLAYLVPALA 72 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKA----LKYTGNVALLKGRSNYLCLERLE---- 113 K+VI++T + ALQ QL + DLP ++ A +K ALLKGR+NY+CL ++E Sbjct: 73 HHKRVIVATATLALQRQLVAHDLPRLAAAITPLIKREPAFALLKGRNNYVCLNKVEGGAA 132 Query: 114 ----QQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCL 169 Q L ++ ++V+ +R W +T GD D +AW V+ + CL Sbjct: 133 EDPGQDVLFDPLAVGKLGAEVLRVREWVEETESGDRDDLSPGVSD-RAWAQVSVSARECL 191 Query: 170 GSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQ 229 GS C ++DCF +A++ A ADVVV NH L + G +++PE D +I DEAH+ Sbjct: 192 GSKCQFFEDCFAEQAKELARSADVVVTNHALL---AIAAMDGDVQVLPEHDAVIVDEAHE 248 Query: 230 LPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEP 289 L + + L+ + + + A LA + DF L E Sbjct: 249 LVNRVTSAATGELTKTAVERAHHRTDKFVK---------EATAANLAVATLDFTEAL-EN 298 Query: 290 GYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRL 349 G + L ++ A + L D + G +D A ++A + ++ Sbjct: 299 TPEGRFQRGLP-EELGMALVALRDASRSALTELSKNKGGDLDMDGARKQARAATEAVHQV 357 Query: 350 KEINQPGY---SYWYECTS----RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVN 402 E G W E + ++ TL + PL + + + M + + TSATL + Sbjct: 358 AERVLEGAEQDVVWLERSEFKGIKNSTLKIAPLGIENLLRYKMFART-PVVLTSATLKLG 416 Query: 403 DDLHHFTSRLGIEQAE-------------------------------------------- 418 D +G+ E Sbjct: 417 GDFTGVAGSVGLHGTERVELDFKPELPEEIYDAAVKLLREGDSDGEEFLDTVQNLPQYWR 476 Query: 419 SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 +L + SPFDY +Q +L V R+L + G ML +++ GR L +S + Sbjct: 477 ALDVGSPFDYPKQGILYVARHLDPPGRDGIRDDQLDMLADLMDNAGGRTLGLFSSMRAAQ 536 Query: 479 DLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIID 538 AE+ R + LP+L QGE S +LL++F L T S W+GV+V G +L LV+ID Sbjct: 537 TAAEKLRTKIDLPILCQGEDSLAELLRKFAEDPETCLFGTLSLWQGVNVPGASLQLVVID 596 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 ++PF PDDP+ AR E GG+ F V A + L QG GRLIR DD+GV+ + D Sbjct: 597 RIPFPRPDDPVSAARTEAVGRSGGNGFMAVSASHAALLLAQGAGRLIRAIDDKGVVAVLD 656 Query: 599 NRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 +RL +PYG+ AS+P +T D R ++ L + Sbjct: 657 SRLATKPYGSFLRASMPAFWQTDDTERVLKSLRAIDA 693 >UniRef50_A8LYP2 Helicase c2 n=13 Tax=Actinomycetales RepID=A8LYP2_SALAI Length = 699 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 218/660 (33%), Positives = 304/660 (46%), Gaps = 62/660 (9%) Query: 13 KAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGS 72 A+PG R Q++M A+ A+ + L+V+AGTGTGK+ AYLAPAL V++ST + Sbjct: 56 NAVPGGAARPGQQEMTTAIEAAVSAREHLLVQAGTGTGKSLAYLAPALTVDGPVVVSTAT 115 Query: 73 KALQDQLYSRDLPTVSKA----LKYTGNVALLKGRSNYLCLERLEQQALAGG-----DLP 123 ALQ QL DLP ++ A L A+LKGR +YLCL RL+ D P Sbjct: 116 LALQSQLVDHDLPRLADAVEPLLGRRPTFAVLKGRHHYLCLARLDNATEEEPGDTLFDQP 175 Query: 124 V-----------QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGS- 171 ++ V LR W+ +T GD +D QAW LV+ C+G+ Sbjct: 176 TPSGTTWLGEAGRLGRQVQRLRDWAEKTDTGDRDELDPGVDD-QAWRLVSMPARECVGAA 234 Query: 172 DCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLP 231 CP +CF +R +A +AD+VV NH L DM+ ++P +++ DEAH+L Sbjct: 235 RCPFGAECFADASRARAREADIVVTNHSLLAVDMLAGRH----IVPPHQLLVVDEAHELA 290 Query: 232 DIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGY 291 D S L + +L T R L+ + A+ L + + L E Sbjct: 291 DRVSSAAQAEL----VPELIDRSTRRARPLLR-----PETAEALTTAGDALAVGLAEAP- 340 Query: 292 RGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKE 351 G L L P +Q A LLD D ++G D R + L L Sbjct: 341 AGRLTAGLPAP-LQEACTLLDAATRAALD----AIGEIKADDPDPVRKQQVKAVLDELSG 395 Query: 352 -----INQPGY-SYWYECTS--RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVND 403 +++ + W E L + PLSVA + + + + TSATL++ Sbjct: 396 TAQRLLDEADHDVAWVERNDVTGRRALVVAPLSVAGTLATHLYE-DRTVVATSATLTLGG 454 Query: 404 DLHHFTSRLGIEQA-----------ESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQL 452 LG+E +SL + SPFDY+RQ +L V +LP+ + G Sbjct: 455 RFDSVARALGLEAPAEAPVTSGPGWQSLDVGSPFDYARQGILYVAAHLPRPSASGLPDAA 514 Query: 453 AAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGN 512 A L ++EA GR L +S + AE RA LPVLLQGE + L+++F + Sbjct: 515 GAELLGLVEALGGRTLGLFSSRRAAQQAAELLRARTDLPVLLQGEQALPLLVRRFREEQS 574 Query: 513 ALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPD 572 + L S W+GVDV GD LV+ID+LPF PD+PL AR GG F V +P Sbjct: 575 SCLFGVMSLWQGVDVPGDACQLVVIDRLPFPRPDEPLAAARAAAVDADGGSGFAAVSVPI 634 Query: 573 AVITLKQGVGRLIRDADDRGVLVICDNRLVM-RPYGATFLASLPPAPRTRDIARAVRFLA 631 A + L QGVGRLIR DRGV+ + D+RL R YG SLPP T A L Sbjct: 635 AAVRLAQGVGRLIRATGDRGVVAVLDSRLETARGYGPFLRRSLPPFWYTTRPDVARGALE 694 >UniRef50_P29741 Probable ATP-dependent helicase dinG homolog n=50 Tax=Gammaproteobacteria RepID=DING_PHOPR Length = 692 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 190/678 (28%), Positives = 302/678 (44%), Gaps = 74/678 (10%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAI-----EKGQPLVVEAGTGTGKTYAYLAP----ALR 61 L + F PR Q + + + + +K + LV EAGTG GK+ AYL AL Sbjct: 17 LGNQLDNFIPRRAQNYLVAEIAKTLAGEYHQKHRMLVGEAGTGIGKSLAYLLGGIPFALF 76 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 KK++IST + ALQ+QL ++DLP ++ + L KGR Y C +LE D Sbjct: 77 NNKKLLISTATVALQEQLINKDLPLFNRIYPKEFSFILAKGRQRYCCNHKLEACCATNND 136 Query: 122 LPVQIL------SDVILLRSWSNQT----VDGDISTCVSVAEDSQAWPLVTSTNDNCLGS 171 V + SD+ LLR T DGD + + D + WP + + +C + Sbjct: 137 QQVTLWEEKPKKSDLDLLRRMLKATRDGKWDGDRDSWPTTIPD-RVWPQIMADKHSC-HA 194 Query: 172 DCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD--VMIFDEAHQ 229 P ++ C KAR+ ADV++ NH L +AD+ E G G ++PE + + + DEAH Sbjct: 195 GLPQHRSCPFAKAREHLDKADVIIANHALLMADI---ELGGGVILPEPEQTIYVIDEAHH 251 Query: 230 LPDIASQYFGQSLSSRQLLDLAKDI--TIAYRTELKDTQQLQKCADRLAQSAQDFRLQL- 286 LP +A + + S + + + TI EL + ++ + D + ++ Q L Sbjct: 252 LPKVARDFSSAASSLKGAATWLEKLNQTIGKLAELAEYKKAARFQDAILENIQHLIPTLR 311 Query: 287 ------------GEPGYRGNLRELLANPQ---------IQRAFLLLDDTLELCYDVAKLS 325 + YR EL A + ++A L +L + K + Sbjct: 312 QVANNVDVGMFSKDGIYRFEHGELPAWLEQEAKGCKDASKKALQSLGKIHDLISERLKDN 371 Query: 326 LGRSALLDAAFERATLYRTRLKRLKEINQ----------PGYSYWYECT---SRHFTLAL 372 + L + A + +Y RL+ L+++ + W E + + + Sbjct: 372 EIQQRLGEQALAESGVYLQRLENLEKVWALMAQPKKDKGAPLARWIEKNPDNEGDYIIQV 431 Query: 373 TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI---EQAESLLLPSPFDYS 429 +PL V + +L+ + I SATL + +F ++GI + L L SPFDY Sbjct: 432 SPLEVGYRLDQLLWSRAAGAILVSATLRALNQFTYFCRQVGIYEMDSTRFLALASPFDYQ 491 Query: 430 RQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA--- 486 A L + + L L +E +L +S+ M +A++ R Sbjct: 492 NNARLVIPALSLEPQADKFTDLLIKTLPEYLEG-ETASLVLFSSYWQMNKVADELRPLAK 550 Query: 487 TMTLPVLLQGETSKGQLLQQFV----SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPF 542 +L+QGE S+ L++ S ++L T SF EG+D+ GD L +II K+PF Sbjct: 551 KNKWELLVQGEESRHITLKKHKDNCKSGKPSILFGTGSFSEGLDLPGDLLKNLIITKIPF 610 Query: 543 TSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 P P+ +A E GG+PF ++ +P+A L Q VGRLIR DD G +V+ D R++ Sbjct: 611 GVPTSPVEEAHAEYIESCGGNPFMQISVPEASKKLIQSVGRLIRKEDDMGRVVLLDRRII 670 Query: 603 MRPYGATFLASLPPAPRT 620 R YG L SLPP R Sbjct: 671 NRRYGKALLDSLPPFKRV 688 >UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus RepID=C5D3B0_GEOSW Length = 921 Score = 491 bits (1263), Expect = e-137, Method: Composition-based stats. Identities = 184/662 (27%), Positives = 294/662 (44%), Gaps = 72/662 (10%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKKKVIIST 70 + ++ R+ Q +M V +A+E Q ++EAGTG GK+ AYL P A +K+V+IST Sbjct: 251 LDHYERRDGQWEMMKLVYEALETSQHALIEAGTGIGKSLAYLIPSAFFAYEQQKRVVIST 310 Query: 71 GSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 + LQ QL RD+P + + + + VA+LKG+ NYL L++ L ++ Sbjct: 311 HTLQLQQQLLERDIPFLKEVVPFPLRVAVLKGKRNYLSLDKF-IAFLQEHHQNYDVVLLK 369 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMD 190 L W QT GD+ + + WPL+ ++ G F +A+++A + Sbjct: 370 CQLLVWLTQTETGDMDELNASSGARLFWPLLVMDEEDNGGKYN------FFWRAKQRAEE 423 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 A +V+ NH L D+ L+P+ + MI DEAH L ++AS YFGQ + + + Sbjct: 424 AHIVITNHAFLLHDVTAS----TPLLPDYEHMIMDEAHHLEEVASHYFGQQVDYVSIRLI 479 Query: 251 AKDITI--------------AYRTELKD---------TQQLQKCADRLAQSAQDFRLQLG 287 I A R D ++LQ D L + + + L+ Sbjct: 480 LTRIGKVNENGSLAKLMKLFAGRHWNADDHFFRCGQLVEELQFECDELFRMIRRYALERK 539 Query: 288 EPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYR---- 343 + R + + + L + + L F + Sbjct: 540 SAESGRCRYRFEPQKESGRQWSAMKELLWRIRGHVANLVDETKQLQTFFSENNMESSISA 599 Query: 344 ----------------TRLKRLKEINQPGYSYWYECTSRHFT----LALTPLSVADKFKE 383 L L E + P W E + + P+ + + F E Sbjct: 600 QPYSYFSDVSSLNQIIDTLYDLIESDDPMVVRWIEAEEKGAANATAVYSQPIQLDEFFAE 659 Query: 384 LMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL--LLPSPFDYSRQALLCVLRNLP 441 + S + TSATL++N + SR G+ + +PSPF Y QA+L + + P Sbjct: 660 RLFMPKKSIVLTSATLTMNGSFAYIISRFGLSDFYPICQTIPSPFSYKEQAMLMIPSDFP 719 Query: 442 QTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQ 495 + A +A + I + G+ +L TS+ +++ A + ++ Q Sbjct: 720 PISSVSLEEYAAVVAEGVAQIAKRIKGKMLVLFTSYELLKLTANAMKMEERNEDYVLIAQ 779 Query: 496 G--ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKAR 553 G S +L + F A+L TS+FWEGVD+ GD LS+V+I +LPF PDDP+++A+ Sbjct: 780 GVQSGSATKLTKAFQQFDQAILFGTSNFWEGVDLPGDELSVVVIVRLPFAPPDDPVIEAK 839 Query: 554 MEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLAS 613 E R +GG+PF E+ LP+AV+ KQG GRLIR D+G + + D RL YG FL S Sbjct: 840 SEYIRAKGGNPFYELSLPEAVLRFKQGFGRLIRTKKDKGAIFVFDRRLTSASYGKYFLNS 899 Query: 614 LP 615 LP Sbjct: 900 LP 901 >UniRef50_P64315 Probable ATP-dependent helicase dinG homolog n=11 Tax=Mycobacterium tuberculosis complex RepID=DING_MYCBO Length = 664 Score = 490 bits (1262), Expect = e-137, Method: Composition-based stats. Identities = 214/650 (32%), Positives = 305/650 (46%), Gaps = 47/650 (7%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKK 65 +A A G R Q++MA AV A E G+ LVV+AGTGTGK+ AYL PA+ Sbjct: 14 AIAVAALGGTRRRGQQEMAAAVAHAFETGEHLVVQAGTGTGKSLAYLVPAIIRALCDDAP 73 Query: 66 VIISTGSKALQDQLYSRDLPTVSK----ALKYTGNVALLKGRSNYLCLERLEQ---QALA 118 V++ST + ALQ QL RDLP + AL ALLKGR NYLCL ++ + Sbjct: 74 VVVSTATIALQRQLVDRDLPQLVDSLTNALPRRPKFALLKGRRNYLCLNKIHNSVTASDH 133 Query: 119 GGDLPVQIL----------SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC 168 + P + L DV L +W++ TV GD D ++W V+ + C Sbjct: 134 DDERPQEELFDPVAVTALGRDVQRLTAWASTTVSGDRDDLKPGVGD-RSWSQVSVSAREC 192 Query: 169 LG-SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEA 227 LG + CP +CF +AR A ADVVV NH L D V + + ++PE +++ DEA Sbjct: 193 LGVARCPFGSECFSERARGAAGLADVVVTNHALLAIDAVAESA----VLPEHRLLVVDEA 248 Query: 228 HQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLG 287 H+L D + L+S L A+ IT + K TQ+LQ + + + D R Sbjct: 249 HELADRVTSVAAAELTSATLGMAARRITR--LVDPKVTQRLQAASATFSSAIHDAR---- 302 Query: 288 EPGYRGNLRELLAN--PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTR 345 PG L + +A ++ A ++ D S+ A T R Sbjct: 303 -PGRIDCLDDEMATYLSALRDAASAARSAIDTGSDTTTASVRAEAGAVLTEISDTASRIL 361 Query: 346 LKRLKEINQPGYSYWYECTSRH----FTLALTPLSVADKFKELMAQKPGSWIFTSATLSV 401 I W E H L + PLSVA+ + + + + TSATL++ Sbjct: 362 ASFAPAIPDRSDVVWLEHEDNHESARAVLRVAPLSVAELLATQVFAR-ATTVLTSATLTI 420 Query: 402 NDDLHHFTSRLGIEQA---ESLLLPSPFDYSRQALLCVLRNLPQTNQPGS--ARQLAAML 456 + G+ L + SPF +++ +L V +LP + GS A QL + Sbjct: 421 GGSFDAMATAWGLTADTPWRGLDVGSPFQHAKSGILYVAAHLPPPGRDGSGSAEQLTE-I 479 Query: 457 RPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLV 516 +I A GR L +S R E R ++ PVL QG+ S L+++F + L Sbjct: 480 AELITAAGGRTLGLFSSMRAARAATEAMRERLSTPVLCQGDDSTSTLVEKFTADAATSLF 539 Query: 517 ATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVIT 576 T S W+GVDV G +LSLV+ID++PF PDDPLL AR RGG+ F V A + Sbjct: 540 GTLSLWQGVDVPGPSLSLVLIDRIPFPRPDDPLLSARQRAVAARGGNGFMTVAASHAALL 599 Query: 577 LKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARA 626 L QG GRL+R DRGV+ + D+R+ YG ASLPP +T + + Sbjct: 600 LAQGSGRLLRRVTDRGVVAVLDSRMATARYGEFLRASLPPFWQTTNATQV 649 >UniRef50_Q0AXW2 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXW2_SYNWW Length = 681 Score = 487 bits (1255), Expect = e-136, Method: Composition-based stats. Identities = 194/663 (29%), Positives = 311/663 (46%), Gaps = 47/663 (7%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA- 59 + F G + + +P +K R+ Q + VAV+ A+ + L+ EAGTG GKT+AYL PA Sbjct: 9 IKKYFESSGPMEQLLPDYKFRQEQVNLTVAVSAALSDQEFLLAEAGTGVGKTFAYLLPAV 68 Query: 60 ---LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 L+ +KV+I+T +KALQ QL RDLP V + +K A KGR N+LC + Sbjct: 69 LWSLQENEKVVIATRTKALQQQLIERDLPDVKRVIKADFTCAEAKGRENFLCWNKYINIL 128 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 L + + W+ Q+ GD + + W ++ + +C C + Sbjct: 129 AGKKRLQEGEFEFLQSVLPWAEQSETGDRKELRLKSALMKHWDILAADRKSCRKDKCLYH 188 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 + CF +K K+ + ++V NH L L+D+ V L+PE +I DEAH L A Sbjct: 189 EKCFRLKMIKRLEKSQIIVTNHALLLSDVQVDNR----LLPEYHYLIIDEAHSLDREAFD 244 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTELK-----DTQQLQKCADRLAQSAQDFRLQLG---- 287 SS +DL + + AY +K D + L +C ++ + + + Sbjct: 245 KLSMRFSSGDSMDLLEYLQKAYLPHIKELSSVDRELLGECLTHISMAVKLLKEYFSALNR 304 Query: 288 ----EPGYRGNLRELLANPQIQRAFLLLD---DTLELCYDVAKLSLGRSALLDAAFERAT 340 + GY L A+ + L+ D + + K + E Sbjct: 305 PLSSKNGYEATLVIKAADLEKTWFLEALEIHQDWQDSINLLLKNLKKLEECMGGVEESEE 364 Query: 341 LYRTRLKRLKEIN-----------QPGYSYWYECTSRHFT-LALTPLSVADKFKELMAQK 388 L R + +E + Q W +C ++ +P+ +A + + + K Sbjct: 365 LSRVIISLQEEADHAYQINEEHSFQSDMLVWLDCERGKVKAVSSSPVCIASELQNRLYHK 424 Query: 389 PGSWIFTSATLSVNDDLHHFTSRLGI------EQAESLLLPSPFDYSRQALLCVLRNLPQ 442 S + SATL+V + +F ++ G+ E+ ++LL SPFDY +QA +L ++P Sbjct: 425 LESLVMVSATLAVEERFDYFLNKFGLSQLQEEERLKTLLEKSPFDYKKQAGYILLDDMPA 484 Query: 443 TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQGETS 499 ++P +LA +L II+ GR +L TS ++D+A R + +L+Q E Sbjct: 485 RDEPDYQEKLAGILSQIIDITGGRTLILFTSRQQLKDIAGIIRPYCEQRQVKLLVQNEDG 544 Query: 500 K-GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCR 558 L +Q+ + ++++ +FWEG+D++GD L ++I KLPF SPD+P +A + + Sbjct: 545 GFETLKEQYTAHPRSVIMGLDTFWEGIDLKGDLLKCLVIIKLPFRSPDEPFCQAWEKYYQ 604 Query: 559 LRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP-PA 617 F LPDAVI LKQGVGRLIR +DRG +VI D RL Y FL SLP Sbjct: 605 QLNQSGFSRFLLPDAVIRLKQGVGRLIRGENDRGAIVILDARLGKSSYSKVFLNSLPFKN 664 Query: 618 PRT 620 PR Sbjct: 665 PRV 667 >UniRef50_C0W0F4 ATP-dependent DNA helicase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0F4_9ACTO Length = 640 Score = 486 bits (1251), Expect = e-135, Method: Composition-based stats. Identities = 187/649 (28%), Positives = 305/649 (46%), Gaps = 41/649 (6%) Query: 1 MTDDFAPDGQLAKAIPGF--KPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP 58 M+++ + L + + F R Q+QM V A+ + + +++AGTGTGK++ YL P Sbjct: 1 MSEETSELDLLDEVVSSFGGSARAGQQQMVRTVASALAEDKIALIQAGTGTGKSFGYLVP 60 Query: 59 ALR----AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE- 113 ++ K++VI++T + ALQ Q+ +D P V++ L VA LKG +NYLCL ++E Sbjct: 61 VMQRVANTKERVIVATATLALQRQILEKDAPCVNEHLPKPVKVAALKGWNNYLCLHKVEG 120 Query: 114 ----QQALAGGDLPVQILS-------DVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVT 162 + AL DL +++ +R W+ QT GD D Q W V+ Sbjct: 121 GYAEEYALFPSDLVDFAPKTSSATGKEIVRVREWAKQTDTGDRDDLKPGVSD-QVWRQVS 179 Query: 163 STNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVM 222 ++ CLGS CP+ +CF AR++A +A+VV+ NH + + + ++ E D + Sbjct: 180 VPSNECLGSTCPLRDECFPALARERATEANVVITNHAVL----GIHATSENKMCGEFDAL 235 Query: 223 IFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDF 282 + DEAH L I L A T+++ +L A +++ Sbjct: 236 VVDEAHDLMRIVHSQATLRLHPG-----------AAVTKMRWAGRLAGVATTAVETSLQG 284 Query: 283 RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLY 342 ++ E G LR ++Q A LLD + L S +A A Sbjct: 285 LEKVLEGFSEGLLR--TRPEELQDAMRLLDTEVRLVLSSINTSDKDAAEKKLATGVVAEL 342 Query: 343 RTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVN 402 L + ++ + L PL V+ + + + + TSATL + Sbjct: 343 AEFLDAWDRPVESMITWVTQRDEDPAVLNCVPLDVSAPIAFNLFSE-KAVVLTSATLKLG 401 Query: 403 DDLHHFTSRLGIEQAES----LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRP 458 S +G+ + ES + + SPFD ++Q +L V LP + G + + L Sbjct: 402 GSFGPLASEVGVYRVESELEMVDVGSPFDPAKQGILYVAAELPAPPRSGVSEEQLQTLLR 461 Query: 459 IIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVAT 518 + EA+ G L +S + A+ R + LPVLLQGE L+Q+F LV T Sbjct: 462 LTEASGGGMLGLFSSKRAAQQAADYLRESTDLPVLLQGEDQLSNLVQEFREDSQTCLVGT 521 Query: 519 SSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLK 578 S W+G+D++G LV++D++PF P DP+++AR ++ +G +PF V L A + + Sbjct: 522 MSLWQGIDIKGPNCRLVVMDRIPFPVPSDPVIEARNDEAARKGQNPFQVVSLSHASLLMA 581 Query: 579 QGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAV 627 QG GRL+R DD+G++ + D+RL +PYG SLP T I AV Sbjct: 582 QGAGRLLRSVDDQGMVAVLDSRLATKPYGMFIRKSLPQLWPTTSIEVAV 630 >UniRef50_C7NJ65 DNA helicase, Rad3 n=28 Tax=Actinomycetales RepID=C7NJ65_KYTSD Length = 765 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 200/643 (31%), Positives = 301/643 (46%), Gaps = 53/643 (8%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR----AKKKVIISTGS 72 G PRE Q +M V +A+ + L+V+AGTGTGK+ AYL PA+ K V+++T + Sbjct: 27 GGSPREGQARMTAEVARAVNTSEHLLVQAGTGTGKSLAYLVPAVAHAVATGKPVVVATAT 86 Query: 73 KALQDQLYSRDLPTVSKAL----KYTGNVALLKGRSNYLCLERL--------EQQALAGG 120 ALQ Q+ RDLP V++AL AL+KGR+NYLC +L ++ G Sbjct: 87 LALQAQIVDRDLPRVAEALRSEMGRPITYALVKGRNNYLCQHKLLGGFPDDDADALVSMG 146 Query: 121 DLPVQ---ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG-SDCPMY 176 + + +V+ LR W+ T GD V +AW V+ + C G S CP+ Sbjct: 147 QVDADRSALGEEVVRLREWAQITESGDRDELVPGV-SHRAWRQVSVSARECFGASRCPVA 205 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 +CFV +R+ A D DV+V NH D + S ++PE D+++ DEAH+L D + Sbjct: 206 SECFVELSREAAKDVDVIVTNHAFLAIDAIEGRS----MLPEHDLLVVDEAHELVDRVTG 261 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLR 296 L+ + A+ DT +L++ + L+Q+ +P G LR Sbjct: 262 VATDELTPGTVAIAARKAGK-----FADTDRLEEAEEALSQAL--------DPLPEGTLR 308 Query: 297 ELLANPQIQRAFLLLDDTLE-----LCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKE 351 L + A ++L D L + + + G AA + RL +E Sbjct: 309 SLP--DALADALVVLRDAARGVSTDLKPEKGEKADGPQQTARAAVDEVGDVAQRLLEERE 366 Query: 352 INQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSR 411 ++ + R L + P+SVA +E + + + + TSATL + Sbjct: 367 LDVVWVAPDGRSNQRRNVLRVAPMSVAMLLREKVFTE-RTVVMTSATLELGGSFDALAGT 425 Query: 412 LGI-----EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGR 466 LG+ + + SPFDY +QA+ V +LP + G+A + + +I A GR Sbjct: 426 LGLLGAGAPSWNGVDVGSPFDYPKQAMAYVAGHLPAPGRDGTAPEQVDEIEALIRAAGGR 485 Query: 467 CFMLCTSHAMMRDLAEQFRATMT--LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEG 524 L +S R A++ R + VL QGE L+++F + L T S W+G Sbjct: 486 TLGLFSSMRAARAAADEMRERLGDEFEVLCQGEDQLPTLVRRFAADARTCLFGTLSLWQG 545 Query: 525 VDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRL 584 VDV G LV+ID++PF PDDPL AR + GG+ F V A + L QG GRL Sbjct: 546 VDVPGSACQLVLIDRIPFPRPDDPLSSARSQAIARNGGNGFMAVSATHAALRLAQGSGRL 605 Query: 585 IRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAV 627 +R ADDRGV+ D R+V Y SLPP T+D A + Sbjct: 606 VRRADDRGVVAFLDPRMVTARYAGFLQKSLPPFWPTQDRALVL 648 >UniRef50_A7BD43 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD43_9ACTO Length = 646 Score = 484 bits (1246), Expect = e-135, Method: Composition-based stats. Identities = 202/646 (31%), Positives = 293/646 (45%), Gaps = 46/646 (7%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 G PRE Q M A+E Q L+V+AGTGTGK+ YL P L + ++ST + Sbjct: 21 GGSPREGQASMCAEGAAALEDRQHLLVQAGTGTGKSVGYLVPLLTHCAMNGVRGVVSTAT 80 Query: 73 KALQDQLYSRDLPTVSKAL----KYTGNVALLKGRSNYLCLERL------EQQALAGGDL 122 ALQ Q+ +D P V A+ VA+LKG SNY CL +L E D+ Sbjct: 81 LALQRQILVKDAPVVVDAVASATGARLKVAVLKGWSNYACLHKLDGGYPTEGTLFEDHDM 140 Query: 123 PV----QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 V ++ +++ +R W ++T GD V D +AW + CLG CP+ + Sbjct: 141 SVGPTGELGKEILRIREWISETTTGDRDDLVPGVSD-RAWRHASVAKPECLGKHCPLIDE 199 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYF 238 CF AR +A DADVVV NH LF + G GEL E D ++ DEAH+L D Sbjct: 200 CFAQAARLEAADADVVVTNHSLF----GINACGEGELFGEYDAVVIDEAHELADRVRSQA 255 Query: 239 GQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLREL 298 L+ ++ +A+ + D+ L++ L + L E Sbjct: 256 AADLTVARVSRVARSLRSNLSI---DSTDLEEAGAGLGAAMSPLEEGLLE---------- 302 Query: 299 LANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYS 358 + A ++LD + G A A L + Sbjct: 303 YRPSALVDAMIVLDGAARRASHEVSEAQGEPAAKLLARAAIDELIGALDAWGRDPDQSIA 362 Query: 359 YWYECTSRHFTLALTPLSVADKFK-ELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-- 415 Y + S + L + PL V+ + ++P I TSATL++ + +++G+ Sbjct: 363 YITKDESDNARLTVGPLDVSAAIGGNGIGERP--AILTSATLAIGGNFDFMAAQVGMAVS 420 Query: 416 --QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTS 473 + + SPFD+ RQ + V +LP + G + +L L + +A+ G L S Sbjct: 421 GVPWHGIDVGSPFDHGRQGIRYVATHLPLPGRDGPSEELLDELVELAQASGGGMLALFAS 480 Query: 474 HAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLS 533 + R L V LQGE + QL+Q+F ++ LV T S W+GVDV G Sbjct: 481 RRGAMAGGQALRERTDLTVYLQGEETLAQLIQRFREERDSCLVGTMSLWQGVDVAGAACR 540 Query: 534 LVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGV 593 LV+IDK+PF PDDP+ +AR D RGG+ F V L A + + QGVGRL+R DDRGV Sbjct: 541 LVVIDKIPFPRPDDPVSRARSMDVERRGGNGFVSVSLTHAALMMAQGVGRLLRSTDDRGV 600 Query: 594 LVICDNRLVMRPYGATFLASLPPAPRTRDIAR---AVRFLAIPSSR 636 + I D R+V + YG + SLP T D A+R LA S R Sbjct: 601 VAILDPRVVTKRYGGFIMRSLPAMWPTTDPEVVRGALRRLAKGSDR 646 >UniRef50_B2S179 ATP-dependent helicase, DinG family n=4 Tax=Borrelia RepID=B2S179_BORHD Length = 685 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 176/647 (27%), Positives = 301/647 (46%), Gaps = 49/647 (7%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIIS 69 I GF R Q +M +++A E LV+EA TGTGK+ AYL A+ + ++KVIIS Sbjct: 14 NIKGFVKRNTQLRMIKKISKAFENENFLVIEAPTGTGKSLAYLIAAIDFIQKTQEKVIIS 73 Query: 70 TGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSD 129 T S LQ+QL +D+ T+ K + + ++KG NYLCL RLE+ Sbjct: 74 TASINLQEQLIKKDIETLEKLIPFKMRFGVIKGMRNYLCLRRLEELEKNLLTYTFNKKHL 133 Query: 130 VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAM 189 L+ W+ T GD + D Q W V+++ + C G CP CF KARKK + Sbjct: 134 EALIY-WTQNTKTGDRDELHFI--DEQIWEEVSASPETCSGITCPDENKCFFKKARKKIL 190 Query: 190 DADVVVVNHHLFLADMVVKESGFGE-----------------LIPEADVMIFDEAHQLPD 232 + D+++ NHHL L D+ +K E ++P +I DEAH L + Sbjct: 191 ECDIIITNHHLLLNDLYIKNEILTEKENYENGSEKNYEEINLILPNVKNIIIDEAHYLEE 250 Query: 233 IASQYFGQSLSSRQLLDL---------AKDITIAYRTELKDTQQLQ-KCADRLAQSAQDF 282 A F ++ S + + ++I AY+ + L + + + + +DF Sbjct: 251 AARTLFSKNFSRIGIKQIFTKIDKIIKKQNINGAYKKNFEIETMLSFENVEYIIKIQKDF 310 Query: 283 --RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSA--LLDAAFER 338 ++ ++ + + +Q L++ + + ++A L+ + Sbjct: 311 PSIYRITNDTHKTDFY-IRIKTHLQNIIYNLENYKVSITSIIQNMENKTAKIELERLIKN 369 Query: 339 ATLYRTRLKRLKEINQ-PGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSA 397 + +K NQ + +W E + + + + ++M ++ IFTSA Sbjct: 370 IEYKESLIKNFISENQYDNFCFWIENKKNIPIFKTSGIYLGPELNKIMYKRVKRIIFTSA 429 Query: 398 TLSVNDDLHHFTSRLGIE----QAESLLLPSPFDYSRQALLCVLRNLPQTNQ-PGSARQL 452 TL +N +F ++ G+ E LP F Y +++L V ++ N+ Q Sbjct: 430 TLMINQSFSYFINQTGLNLINQDIEMEKLPYSFPYKEKSILTVTSDIEDPNKAEEFLNQS 489 Query: 453 AAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQGETSKGQLLQQFVS 509 ++ ++ N G +L TS + + + + + + + +QGE K +L+ F Sbjct: 490 IQYIKELVILNKGGTLILLTSFKSLEYIGKNIKDFLRENNINLFIQGELPKHELINSFKK 549 Query: 510 AGN-ALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEV 568 + ++L+ +FWEG+D++GD L++VII KLPF +P DP+L A+ + F + Sbjct: 550 SPKKSVLIGMKNFWEGIDIKGDKLTMVIIPKLPFQTPSDPILIAKNALATKSNENFFTQE 609 Query: 569 QLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 LP A++ KQG GRLIRD+ D G++V D R+ + YG FL SLP Sbjct: 610 TLPQAIMKFKQGFGRLIRDSKDYGIIVCFDKRIFEKTYGKLFLQSLP 656 >UniRef50_B8CRB2 Helicase c2 n=45 Tax=Gammaproteobacteria RepID=B8CRB2_SHEPW Length = 701 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 169/678 (24%), Positives = 296/678 (43%), Gaps = 74/678 (10%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAI-----EKGQPLVVEAGTGTGKTYAYLAP----ALR 61 +A ++P F+ R Q + +++ + ++ + +VVEAGTG GK+ AY+ AL Sbjct: 28 IASSLPNFRSRREQNYIVAEISKTLAGEYDKQRRIIVVEAGTGIGKSLAYILGTIPLALA 87 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE-------- 113 +KKKV I+T + ALQ+QL +DLP + L+KGR Y+CL +LE Sbjct: 88 SKKKVCIATATVALQEQLLHKDLPFFLQHSGLDFTFGLVKGRQRYVCLSKLEMLVGPDNS 147 Query: 114 QQALAGGDLPVQILSDVI--LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGS 171 Q P Q D++ LL+ + +G+ T D W + +C Sbjct: 148 SQMAMWQSKPDQSQVDMLEGLLKDFKESRWNGERDTLTKPLPDH-LWQQIACDKHSC-HK 205 Query: 172 DCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD--VMIFDEAHQ 229 +++C KAR+ DV++ NH L AD+ E G G ++P+ + + DEAH Sbjct: 206 QLASHRNCPFHKAREDIDTWDVLIANHSLLFADL---ELGGGVILPDPEDLYYVIDEAHH 262 Query: 230 LPDIASQYFGQSLSSRQLLDLAKDITIA----------------YRTELKDTQQLQKCAD 273 LP +A + + R D + +T + L + + Sbjct: 263 LPIVARDFSSAQATIRGASDWLEKLTKTTSKLQNQIKSNYIIAPAQAMLDHIGDISGLLN 322 Query: 274 RLAQSAQDFRLQLGEPGYRGNLR------------------ELLANPQIQRAFLLLDDTL 315 ++A Q P R +A Q + LL++ + Sbjct: 323 QVAHFCDAQAKQFDNPENRFRFEHGKLPPALLILAENLATASNVALKQFNKMLALLNEAI 382 Query: 316 ELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQP---GYSYWYEC---TSRHFT 369 + LS + +R + + + + + P + W E + Sbjct: 383 KDGDIPKHLSEALLSETGFMLQRIENLQKLWRMMAKQDNPKGAPMARWIEQLTGKQSDYL 442 Query: 370 LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI---EQAESLLLPSPF 426 + +P+ V + L+ K + SATL ++ +HFT ++G+ + + L L SPF Sbjct: 443 FSASPIEVGFMLENLLWDKAAGVVLCSATLRALNNFNHFTHQVGLSINDGSRYLALDSPF 502 Query: 427 DYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA 486 D+ + A L + + + +LA + ++E + +L S+ M +A+ Sbjct: 503 DFEQNATLFLPQMDTEPTHDNYTDELAKQIIALVE-DEMASLVLFASYWQMEKVADLVEN 561 Query: 487 TMTLPVLLQGETSKGQLLQQFVS----AGNALLVATSSFWEGVDVRGDTLSLVIIDKLPF 542 + +L+QG + ++L++ + +++ T SF EG+D+ GD L+ +II KLPF Sbjct: 562 KIKTNLLIQGTLPRQEILKRHKALCDDTKPSIIFGTGSFSEGLDLPGDYLTNLIITKLPF 621 Query: 543 TSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 P P+ +A E +++GG+PF ++ +PDA L Q GRL+R D G + I D RLV Sbjct: 622 AVPTSPVEQAHSEYIKIKGGNPFLQLTIPDASRKLVQSCGRLLRKEQDYGRISILDRRLV 681 Query: 603 MRPYGATFLASLPPAPRT 620 + YG + L +LPP R Sbjct: 682 TKRYGKSLLDALPPFRRV 699 >UniRef50_Q1MXU1 ATP-dependent helicase DinG n=1 Tax=Bermanella marisrubri RepID=Q1MXU1_9GAMM Length = 707 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 190/685 (27%), Positives = 287/685 (41%), Gaps = 88/685 (12%) Query: 18 FKPREPQRQMAVAVTQAI------------EKGQPLVVEAGTGTGKTYAYLAPAL----R 61 KPR Q+QM A+ + + Q VVEAGTGTGKT AYL + Sbjct: 23 LKPRYGQKQMIAAIAKTLGGIQSDDEGKRVNDKQVCVVEAGTGTGKTLAYLLSTIPLAED 82 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQ------ 115 KK+I+ST + ALQ+QL S+DLP V+K AL KGR YLC+ +L+Q+ Sbjct: 83 LNKKIIVSTATVALQEQLISKDLPDVAKYSGLEFRYALAKGRGRYLCVHKLDQELKDQRM 142 Query: 116 ------ALAGGDLPVQILSDVIL-LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC 168 G D L + DGD E + W +VT+T+ C Sbjct: 143 QDASMDMFGGADATDDQKGLFQKFLDEFLTGRWDGDRDNWPETIE-YEDWSMVTATHREC 201 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEA--DVMIFDE 226 CP + C ARK DA+V+V NH L +AD+ + G G ++PE + +FDE Sbjct: 202 SNRRCPHFNACPFFTARKSLEDAEVIVANHDLVMADISL---GGGAILPEPAQSIYVFDE 258 Query: 227 AHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKD--------------TQQLQKCA 272 H LPD A +F + Q +L K I+ A T K +++ + Sbjct: 259 GHHLPDKAISHFAGQVKLNQEENLLKQISKAVDTLGKQCGTPMGLLQIVTQFPEKIGEIH 318 Query: 273 DRLAQSAQDFRLQLGEPG-------YRGNLRELLA---------NPQIQRAFLLLDDTLE 316 +L + LG+ +R + + N + +D +E Sbjct: 319 SQLGFARHIILDYLGDQAEVEGISTHRFRMGVVPDALIELAGELNKTHNSLYQYIDKIVE 378 Query: 317 LCYDVAKLSLG--RSALLDAAF----------ERATLYRTRLKRLKEINQPGYSYWYEC- 363 G R A + F E A L + + + W + Sbjct: 379 ALKASLNKDDGEYRQADAERWFPIMGMLLARLEMAGLLWLSFAQQDHEDNVPTARWLQRL 438 Query: 364 ---TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL 420 L +P+ A+ + + + + TSATL+ + GI + Sbjct: 439 ITEYEDDIALYSSPILAAELLAKNLWSRCYGAVVTSATLTALGRFDRLRMKAGIAKDNYF 498 Query: 421 -LLPSPFDYSRQALLCVLRNLPQTNQ-PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 + SPFDY + V + + +Q++ +L ++ N +L TS +M Sbjct: 499 ERIQSPFDYPNLGEILVPNDAVEPGHGDDYTQQVSDLLESHLDENE-STLVLFTSRRLMN 557 Query: 479 DLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGN----ALLVATSSFWEGVDVRGDTLSL 534 D+ Q ++ V+ Q E SK ++L+Q + L +SF EG+D+ GD L Sbjct: 558 DVKFQLPFDVSDHVITQDEFSKQEVLKQHRDKIEAGLPSYLFGLASFAEGIDLPGDLLQH 617 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 VII +LPF+ PDDP+ E +G +PF E+ +PDA + L Q VGRLIR D G + Sbjct: 618 VIIVRLPFSVPDDPVDATLAEWLESKGRNPFMEISVPDASVRLIQAVGRLIRTEQDTGRI 677 Query: 595 VICDNRLVMRPYGATFLASLPPAPR 619 + D RLV + YG+ L LPP R Sbjct: 678 TVLDKRLVSKRYGSLLLDGLPPFRR 702 >UniRef50_D1SEM0 Helicase c2 n=2 Tax=Micromonospora RepID=D1SEM0_9ACTO Length = 713 Score = 482 bits (1242), Expect = e-134, Method: Composition-based stats. Identities = 217/695 (31%), Positives = 300/695 (43%), Gaps = 96/695 (13%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 A+PG R Q+QMA A+ ++I G+ L+V+AGTGTGK+ AYLAPAL V++ST + Sbjct: 33 AVPGGAARPGQQQMAEAIERSIASGEHLLVQAGTGTGKSLAYLAPALTVDGPVVVSTATL 92 Query: 74 ALQDQLYSRDLPTVSKA----LKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV----- 124 ALQ QL DLP ++ A L A+LKGR +YLCL RL+ D + Sbjct: 93 ALQSQLVEHDLPRLADAVEPVLGRRPTFAVLKGRHHYLCLARLDSSVEDEPDDALFDAPH 152 Query: 125 -------------QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG- 170 ++ V LR W+ +T GD +D Q W V+ C+G Sbjct: 153 SGNGGTKWLGEAGRLGKQVQRLRDWAEETATGDRDELDPGVDD-QVWRSVSMPARECVGA 211 Query: 171 SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQL 230 S CP ++CF +R +A +AD+VV NH L DM+ ++P +++ DEAH+L Sbjct: 212 SRCPFGQECFAEASRARAREADIVVTNHSLLAVDMLAGRH----IVPPHRLLVVDEAHEL 267 Query: 231 PDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPG 290 D S L + + R + A+RL ++ + L E Sbjct: 268 ADRVSSAAQAELVPELIDRSTRRARPLLRPD---------VAERLTEAGDALAVGLAEAP 318 Query: 291 YRGNLRELLANPQIQRAFLLLDD----TLELCYDVAKLSLGRSALLDAAFERATLYRTRL 346 G L L P ++ A LLD LE DV A L T Sbjct: 319 -AGRLTAGLP-PALREACTLLDSATRAALEGIGDVKADDPDPVRKQQAKAVLDELSTTAQ 376 Query: 347 KRLKEINQPGYSYWYEC--TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDD 404 + L+E + W E L + PLSVA + + + + TSATL++ Sbjct: 377 RLLEEADHD--VAWVEKPDNGSRRALVVAPLSVAGTLATHLYDE-RTVVATSATLALGGR 433 Query: 405 LHHFTSRLGIEQA----------------------------------------------- 417 LG++ Sbjct: 434 FDTVARALGLDAPPPAPPSPAAAAIATAAAAGRSPVTPVAAAEGSRASVGTVPATEGPGW 493 Query: 418 ESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 SL + SPFDY+RQ +L V +LP+ + G L ++EA GR L +S Sbjct: 494 SSLDVGSPFDYARQGILYVAAHLPRPSVSGLPGPAGEELLALVEALGGRTLGLFSSRRAA 553 Query: 478 RDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 + AE RA LPVLLQGE + L+++F + L S W+GVDV GD LV+I Sbjct: 554 QQAAELVRARTDLPVLLQGEEALPLLVRRFREVRESCLFGVMSLWQGVDVPGDACQLVVI 613 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 D+LPF PD+PL AR GG F V +P A + L QGVGRLIR DRGV+ + Sbjct: 614 DRLPFPRPDEPLAAARAAAVDAGGGSGFAAVSVPIAAVRLAQGVGRLIRATGDRGVVAVL 673 Query: 598 DNRLVM-RPYGATFLASLPPAPRTRDIARAVRFLA 631 D+RL R YG SLPP T A L Sbjct: 674 DSRLETARGYGPFLRRSLPPFWYTTRPEVARGALE 708 >UniRef50_B4RPD7 DinG n=35 Tax=Proteobacteria RepID=B4RPD7_NEIG2 Length = 744 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 191/703 (27%), Positives = 278/703 (39%), Gaps = 97/703 (13%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAI---------------EKGQPLVVEAGTGTGKTYAY 55 + K +PGF+PR QR+M AV A E V+E TG GK+ AY Sbjct: 45 IGKNLPGFRPRASQREMIAAVANAFSRTLTREEGGEPPKREGESIAVIEGPTGVGKSLAY 104 Query: 56 LAP----ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLER 111 L A K++I+S+ + ALQ+QL RDLP + + AL KGR YLC + Sbjct: 105 LLAGGIMAQTRGKRLIVSSATVALQEQLVDRDLPFLVEKSGLELTFALAKGRGRYLCPYK 164 Query: 112 LEQQALAGGD-----------------LPVQILSDVILLRSWSNQTVDGDISTCVSVAED 154 L Q + P ++ + +S + +GD +D Sbjct: 165 LYQLTQSNAQQNLLGFEAPAVLWDSKPKPEELKLLRDIADEFSARRFNGDRDAWPEKIDD 224 Query: 155 SQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGE 214 + W VT+ CL + CP +C AR DVVV NH L LAD+ + G G Sbjct: 225 A-IWLKVTNDRHGCLKAACPNRPECPFYLARDMLETVDVVVANHDLLLADISM---GGGV 280 Query: 215 LIP--EADVMIFDEAHQLPDIASQYFGQSLS-SRQLLDLAKDITIAYR-TELKDTQQLQK 270 ++P E DEAH LP A F S + + L K + + L D +L Sbjct: 281 ILPAPENSFYCIDEAHHLPKKALSRFAAEHSWNIAVWTLEKLPQLTGKIAALTDKAELAN 340 Query: 271 CADR----LAQSAQDFRLQLGEP-----GYRGNLRELLANPQIQRAFLLLDDTLE----- 316 AD L S +++ L E G N R + P + + LE Sbjct: 341 LADEAAASLLDSLHEWQFHLAEEPSLSMGLSENDRRTNSEPTWLWEDGKIPEGLETTVSN 400 Query: 317 -------LCYDVAKLSLGRSA--------------------LLDAAFERATLYRTRLKRL 349 L V L+ SA L A E+ + L + Sbjct: 401 TAIAARSLLKHVVGLNDALSATRREKEQDGALIDRLTGEFGLFIARIEQISAVWDLLSTV 460 Query: 350 KEINQPGYSYWYEC---TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLH 406 + + W + +P+S A + ++ + TSATL + Sbjct: 461 SIEGEEPLAKWIARRADDKNDYIFNASPISSASHLANSLWRRAAGAVLTSATLQSLGSFN 520 Query: 407 HFTSRLGI---EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPG-SARQLAAMLRPIIEA 462 + G+ + +L L SPFD+ +Q L + P + L +I Sbjct: 521 LILRQTGLLWLPETTTLALKSPFDFEKQGELYIPSIYASPKDPEAHTAAVIEWLPKLISP 580 Query: 463 NNG-RCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQF----VSAGNALLVA 517 +L +S M+D+A +L+QGE K LLQ+ +++ Sbjct: 581 TEAIGTLVLFSSRKQMQDVALHLPGDYLPLLLVQGELPKAVLLQKHHQAIEEGKASIIFG 640 Query: 518 TSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITL 577 SF EG+D+ G VII KLPF PD+P+ K + RGG+PF E+ +P+A I L Sbjct: 641 LDSFAEGLDLPGTACVQVIIAKLPFAMPDNPIEKTQNRWIEQRGGNPFIEITVPEAGIKL 700 Query: 578 KQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 Q VGRLIR D G + I DNR+ + YG LA LPP R Sbjct: 701 IQAVGRLIRTEQDYGRVTILDNRIKTQRYGQQLLAGLPPFKRI 743 >UniRef50_C2BW38 ATP-dependent helicase DinG n=3 Tax=Mobiluncus RepID=C2BW38_9ACTO Length = 711 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 194/685 (28%), Positives = 294/685 (42%), Gaps = 66/685 (9%) Query: 3 DDFA---PDGQLAKAIP------GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTY 53 D FA P +L KA+ G R Q MA AV + + G L V+AGTGTGK+ Sbjct: 28 DSFAGYIPSSELQKALTAAVSLLGGSERPGQAAMAAAVERTLHSGGKLAVQAGTGTGKSL 87 Query: 54 AYLAPALRA----KKKVIISTGSKALQDQLYSRDLPT----VSKALKYTGNVALLKGRSN 105 YL PAL +V+IST + ALQ Q+ ++D P V V +LKG N Sbjct: 88 GYLLPALLYCLHEDARVVISTATLALQSQIITKDAPLAVEAVQNVTGSALRVEVLKGWQN 147 Query: 106 YLCLERLEQQALAGGDLPVQILSDVI------------------------------LLRS 135 Y+CL +L D + D L Sbjct: 148 YVCLHKLNGGYEGSEDDLFSTMEDSPFSGIAGSGETTAGPGARTTRQMQGFAAETKRLYE 207 Query: 136 WSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVV 195 W+ +T GD +++W V+ ++ C+G CP +CF V AR KA A +VV Sbjct: 208 WARETTTGDRDEAPRGI-TARSWRQVSLSSLECVGEKCPFRSECFQVSARDKAAQAQIVV 266 Query: 196 VNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDIT 255 NH + + ++ +G +P + +I DEAH+L + S+ L AK Sbjct: 267 TNHAM----IGLEAAGKQNPLPPCEAIIIDEAHELSERVRSQASTEFSANMLASCAK--- 319 Query: 256 IAYRTELKDTQQLQKCADRLAQSAQDFRL-QLGEPGYRGNLRELLANPQIQRAFLLLDDT 314 A + +++L + A L + Q+ + E +LA ++ A L Sbjct: 320 AAASLGVSGSEELAQQAIMLGVALQNLEDSRFTEMPAAVAECRMLALSPLKTALTELSAK 379 Query: 315 LELCYDVAKLSLGRSALLDAAFERATLYRTRLKRL--KEINQPGYSYWYECTS---RHFT 369 + +A + A T L+ + + + W + Sbjct: 380 AGADTESTGGQRADAAKIAVAKAALTSLLDTLETMTPESVANGETILWLTRGRDGDQEPR 439 Query: 370 LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI----EQAESLLLPSP 425 L PL VA K + + + I TSATL + ++G+ + E+L + SP Sbjct: 440 LYTAPLDVAGKLANRLWNE-HAIIATSATLKLGGTFAPLMHKMGLQLDTPKPETLDVGSP 498 Query: 426 FDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR 485 F + RQ +L + R+LP + L ++EA+ G L +S M E R Sbjct: 499 FRHDRQGILYLARDLPAPTRGEHPDVFWNRLVDLVEASGGGALGLFSSRKMAERAGEVLR 558 Query: 486 ATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSP 545 LP+++QGE S L++ +A L+ T S W+GVD+ G+T LV+ID++PF P Sbjct: 559 ERTDLPIMVQGEDSMAALVKDMREDASACLMGTLSLWQGVDLPGNTCRLVLIDRIPFPVP 618 Query: 546 DDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRP 605 DP+++AR + + GG F EV L A + L QG GRL+R A DRGV+ + D+RL Sbjct: 619 SDPVIEARCDAVKRAGGSDFMEVSLTHAALLLAQGTGRLLRSATDRGVVAVLDSRLATAR 678 Query: 606 YGATFLASLPPAPRTRDIARAVRFL 630 YG ASLPP T D + L Sbjct: 679 YGGFLRASLPPLWPTEDSQVVLDAL 703 >UniRef50_D1C098 Helicase c2 n=10 Tax=Actinomycetales RepID=D1C098_XYLCX Length = 696 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 207/672 (30%), Positives = 293/672 (43%), Gaps = 79/672 (11%) Query: 24 QRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR----AKKKVIISTGSKALQDQL 79 Q MA+ V +AI++G+ L+V+AGTGTGK+ YL PA+R A ++VI+ST + ALQ Q+ Sbjct: 40 QHAMALEVVEAIDEGRHLLVQAGTGTGKSLGYLVPAVRHAVVADERVIVSTATLALQRQV 99 Query: 80 YSRDLPTVSKA----LKYTGNVALLKGRSNYLCLER------LEQQAL------------ 117 +RDLP V+ A L +ALLKG NYLCL + ++ L Sbjct: 100 ITRDLPLVADAVAPQLPRPPRIALLKGWHNYLCLHKTGGGYPVDDATLFDLPGITPGESA 159 Query: 118 -----------AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 D + V L +W+++T GD V D +AW V+ T+ Sbjct: 160 TEHPAEAPGRARREDGAASLADQVRRLHAWAHETDSGDRDELVPGVPD-RAWRQVSVTSL 218 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDE 226 CLG CP+ +CF +AR A +ADVVV NH + + SG ++PE V++ DE Sbjct: 219 ECLGQRCPLLAECFPERARAAAREADVVVTNHAML----GIAVSGSPGVLPEHGVVVVDE 274 Query: 227 AHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQL 286 AH+L D A+ LS + A+ E D AQ Q Sbjct: 275 AHELADRATSAATVDLSLTTIEHAARLARRHAAAE-------TTALDAAAQELGSLIAQA 327 Query: 287 GEPGYRGNLRELLANPQIQRAFLLLDDTL-ELCYDVAKLSLGRSALLDAAFERATLYRTR 345 + L E ++ A + D L EL A D + A + Sbjct: 328 PAGSFPLGLPE-----DLRTAVGAVRDALRELLTRTKPDPPQGGAAPDGGAKMAQSAVLQ 382 Query: 346 LKRLKEI----NQPGYSYWYECTSRH---------FTLALTPLSVADKFKELMAQKPGSW 392 + + E + W L PL VA + + + + Sbjct: 383 VYEVAERMAAEDSSSDVLWCSRPGDGPGAGWGDGVSRLHAAPLHVAGLIRAGLLAET-TG 441 Query: 393 IFTSATLSVNDDLHHFTSRLGIEQA-------ESLLLPSPFDYSRQALLCVLRNLPQTNQ 445 IFTSATL++ LG+ + + + SPFDY RQ +L V R+LP + Sbjct: 442 IFTSATLALGGQFDAVAGSLGLGRTDDDGGRWRGVDVGSPFDYPRQGILYVARHLPAPGR 501 Query: 446 PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQ 505 + + +IEA GR L +S +AE R + +PVL QG+ L++ Sbjct: 502 DPATDAQLDEIAGLIEAAGGRTLGLFSSRRAANAVAEAMRERLDVPVLAQGDDQLPTLVR 561 Query: 506 QFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPF 565 QF L T S W+GVDV G LVIID++PF PDDP+ AR GG+ F Sbjct: 562 QFAQDPATCLFGTISLWQGVDVPGPACQLVIIDRIPFPRPDDPVKAARARAVEKAGGNGF 621 Query: 566 DEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD--- 622 V A + L QG GRLIR +DRGV+ + D RL YG S+P T D Sbjct: 622 MAVSATHAALLLAQGAGRLIRATEDRGVVAVLDPRLATARYGTFLTRSMPNFWPTTDGRI 681 Query: 623 IARAVRFLAIPS 634 + A+R LA P Sbjct: 682 VREALRRLATPE 693 >UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=1 Tax=Carnobacterium sp. AT7 RepID=A8UAR2_9LACT Length = 939 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 170/682 (24%), Positives = 293/682 (42%), Gaps = 73/682 (10%) Query: 21 REPQRQMAVAVTQAIEKGQ--PLVVEAGTGTGKTYAYLAPALR---AKKKVIISTGSKAL 75 R Q +M AV + +EA TG GKT YL P + V+IST + L Sbjct: 259 RNQQIKMMDAVYDYFTSDETSHFAIEAATGVGKTLGYLLPLAYIASVENPVVISTYTTLL 318 Query: 76 QDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRS 135 Q QL +D+ ++ L +T A+LK +++Y+ L + E+ D V+++ + LL Sbjct: 319 QKQLLDKDIVQLNTILPFTVQAAILKSKNHYIHLTKFEEVLKEPVDQKVEVIYQMKLLT- 377 Query: 136 WSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVV 195 W +T GD+ + W V + Y + F V A+ K A V++ Sbjct: 378 WLTETETGDLDELNLTNYNHLFWNKVRHRGWLTRPEEDRWYDEDFYVHAQHKIKHASVII 437 Query: 196 VNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDIT 255 NH D+ KE +P +I DEA LPD+A + + ++ + K I Sbjct: 438 TNHSFLCHDLNRKEK----ELPSIGKLIVDEAQHLPDVAMEASSEIFGYYRMQQIIKLIG 493 Query: 256 IAY--RTELKDTQQLQKCADR---------------LAQSAQDF---------------- 282 A ++ L QL + + L DF Sbjct: 494 RASEEKSFLGRITQLSQQLTKIEVSYIENMEMNIFSLEDELSDFINQLLLYCKNTAGNKH 553 Query: 283 --RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALL-------- 332 + Q+ R L ++ L+++ L Y+V L L Sbjct: 554 SQQEQMDIQFNRETHWNLALKKASKKVLTLMNEISYLGYEVVNQGLNEQHQLTQKERYLF 613 Query: 333 DAAFERATLYRTR---LKRLKEINQPGYSYWY----ECTSRHFTLALTPLSVADKFKELM 385 + F+ + + ++ + + N+ W+ + FT+ + + + KE + Sbjct: 614 EDFFDVISTFESQKDIFYAVFQENEENEVTWFSYKEKSPKNSFTIKRSKVDSSKFIKEKL 673 Query: 386 AQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQT-- 443 K ++T ATL +N ++F ++LG E + L++ SP+DY +QA L V + L Sbjct: 674 VDKTPYILYTGATLEINQSFNYFETQLGEENLKELIIESPYDYKKQARLWVPKELKPIKG 733 Query: 444 -NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQG-ET 498 ++ + + IIE + +L S+ M++++ + +L QG Sbjct: 734 LSKKEYVHMVVEQVGNIIENSVENTMVLFNSYEMLQEVYFSLQQNPVASGRELLAQGFSG 793 Query: 499 SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCR 558 S+ ++L++F + +L+ SFWEGVD+ G +LS+++I +LPF SPD P +KA+ Sbjct: 794 SRDRMLKRFFRSTGGILLGADSFWEGVDLPGKSLSIIVITRLPFESPDRPFVKAKHRYLE 853 Query: 559 LRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 + +PF LP A + LKQG+GRLIR D+GV+++ DNRL+ YG ++SLP Sbjct: 854 QKHLNPFTIDSLPKATLRLKQGLGRLIRSEKDKGVMIVLDNRLIQTSYGKQIVSSLPKGL 913 Query: 619 RTRDIA------RAVRFLAIPS 634 ++A + FL Sbjct: 914 PIEEVATKNMGEKLRHFLNTEE 935 >UniRef50_D1YCN3 ATP-dependent helicase DinG n=3 Tax=Propionibacterium acnes RepID=D1YCN3_PROAC Length = 683 Score = 476 bits (1226), Expect = e-133, Method: Composition-based stats. Identities = 204/670 (30%), Positives = 305/670 (45%), Gaps = 78/670 (11%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 G + R Q MA AV QA+ L+V+AGTGTGK+ YLAPAL +VI++T + Sbjct: 25 GGQERPGQVAMAKAVDQAMRDKLHLLVQAGTGTGKSLGYLAPALVYCVEKGAQVIVATAT 84 Query: 73 KALQDQLYSRDLPTV----SKALKYTGNVALLKGRSNYLCLERLE---------QQALAG 119 ALQ QL +D+PT+ K L VA+LKGR+N++CL ++ + G Sbjct: 85 LALQAQLAYKDIPTILDASEKVLSRRPRVAVLKGRNNHICLHKVRGSSTRTKGQDALVPG 144 Query: 120 GDLPV--------------QILSDVILLRSWSNQTVD----GDISTCVSVAEDSQAWPLV 161 DL V + ++V++LR W+ + V+ GD A AW V Sbjct: 145 ADLVVAADDGREVEAAPESTLGAEVVMLREWAEKQVEESGLGDRDDAP--AHTPLAWAQV 202 Query: 162 TSTNDNCLG-SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD 220 + + CLG CP +C AR++A +AD+VV NH + D + G ++PE D Sbjct: 203 SVPANECLGVQRCPFGSECLSEAAREQARNADLVVTNHAMLAIDAL----NGGRVLPEHD 258 Query: 221 VMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQ 280 +I DEAH+L + ++ + LS + AK ++ L AD +A + + Sbjct: 259 TVIIDEAHELVNRFTRAASKDLSPAIVTMTAKRAMTWLDDDVG--ADLLNQADSMAHALE 316 Query: 281 DFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERAT 340 R + Q+ + +L D + + S A Sbjct: 317 AI----------APGRVTTPDAQVIQTCAVLRDLARVAVSQLDRNDEDSREPVDAERVQA 366 Query: 341 LYRTRL-----KRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFT 395 R +R+ + + E + ++ + PLSV +E + + + I T Sbjct: 367 QAAMREVFETAERMVGLAAADVVWVSESEKGYRSIHVAPLSVGGLLRENVFAQ-STTILT 425 Query: 396 SATLSVNDDLHHFTSRLGIEQ-----------------AESLLLPSPFDYSRQALLCVLR 438 SATL + + +G+ + + SPFDYS+Q +L V R Sbjct: 426 SATLCIGGNFLAIARDVGLSPRGQIEGDAPEVFETQMGWRGVDVGSPFDYSKQGILYVGR 485 Query: 439 NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM-TLPVLLQGE 497 +LP+ + G A ++ L ++ A GR L +S AE R+ M +PVL QGE Sbjct: 486 SLPRPGRDGIAPEVLDDLAELVWAAGGRTLGLFSSQRNAVAAAEHMRSAMPDIPVLCQGE 545 Query: 498 TSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDC 557 L ++F + L T S W+GVD+ GDT LV+ID++PF PDDPL+ AR + Sbjct: 546 GHLADLTRRFAADPRTCLFGTVSLWQGVDIPGDTCRLVVIDRVPFPRPDDPLMAARSKAV 605 Query: 558 RLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPA 617 GG+ F V A + L QG GRLIR ADDRGV+ + D RLV YG AS+PP Sbjct: 606 EDAGGNGFMTVSAGHAALLLAQGAGRLIRRADDRGVVAVLDPRLVTARYGNFLRASMPPF 665 Query: 618 PRTRDIARAV 627 T D AV Sbjct: 666 WTTTDREMAV 675 >UniRef50_A6VX61 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=A6VX61_MARMS Length = 707 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 183/687 (26%), Positives = 290/687 (42%), Gaps = 92/687 (13%) Query: 19 KPREPQRQMAVAVTQAI------------EKGQPLVVEAGTGTGKTYAYLAPALRAKK-- 64 KPR QRQM A+ + + E+ V+EAGTGTGKT +Y A+ K Sbjct: 24 KPRAGQRQMIGAIARTLGNIKQGSEGERLEEKHVAVIEAGTGTGKTLSYCLAAIPIAKAR 83 Query: 65 --KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL 122 K+IIST + ALQ+Q+ ++LP + + + T L KGR YLCL LE + Sbjct: 84 GLKLIISTATVALQEQILHKELPDLLEHTELTFKYTLAKGRGRYLCLNNLEGFLSSEEQA 143 Query: 123 PVQILSDVILLRSWSNQ----------------TVDGDISTCVSVAEDSQAWPLVTSTND 166 + + + S+ DGD + D W +T+ + Sbjct: 144 MDDMFAGLFEQHLHSDDINTVLYQEMDTALQKGDWDGDKDNWAGIVRDQD-WRRLTTDHQ 202 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADVMIF 224 C +C Y C KAR + ADV+V NH L LAD+ + G G ++ P+ + IF Sbjct: 203 QCTNRNCANYSACPFFKARAEIEVADVIVANHDLVLADLSL---GGGAILTPPKETIYIF 259 Query: 225 DEAHQLPDIASQYFGQSLSSRQLLDLAK---------------DITIAYRTELKDTQQLQ 269 DE H LPD A +F + +Q + + D+++ + LK QQ+Q Sbjct: 260 DEGHHLPDKAIGHFRHEVRLQQSITWLRQLEKNLVNLKQELTDDVSVTGQLLLKIPQQIQ 319 Query: 270 KCAD----------------RLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDD 313 + L Q R + G+ Q+ F ++ Sbjct: 320 SIVNFIQYAQQGLAPYIQGLGLDQENNQHRFEFGQIPDELRQLAYSLQTSYQKLFNNIES 379 Query: 314 TLELCY------------DVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 + C + A+ ++ E+ + + N P + W Sbjct: 380 IQDECKKTKQNEGMGVTPETAETWQPILGVILGRLEQCIGLWCLYSTVDDQNFPPNARWL 439 Query: 362 ----ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-Q 416 + + L +P+ A+ ++ + K + TSATL+ + H F R G+ + Sbjct: 440 VLSGQGMEQDIELGGSPILAANTLRQQLWDKCFGAVVTSATLTALNQFHRFNMRSGVPRE 499 Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQTNQ-PGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 +E L + SPF++ LL V + N+ ++ L + G +L +S Sbjct: 500 SEYLRVISPFNFQENGLLVVPDMEHEPNRVEQHTAEIVTYLDKHVNTEKG-SLVLFSSRR 558 Query: 476 MMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV----SAGNALLVATSSFWEGVDVRGDT 531 M ++A+ + +L+QGE SK +L +LL+ +SF EGVD+ GD Sbjct: 559 QMEEVAQSVSVGLQEILLMQGEQSKRVILDSHKSRIDEGKGSLLLGLASFAEGVDLPGDY 618 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 L+ V I K+PF PDDP+ E + RGG+PF E+ +PDA + L Q GRL+R D Sbjct: 619 LTCVYIAKIPFAVPDDPVEATLAEWIQKRGGNPFMEITIPDASLRLVQATGRLLRSEKDS 678 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAP 618 G + I D RL + YG+ + SLPP Sbjct: 679 GEIHILDKRLRTKRYGSQLINSLPPYK 705 >UniRef50_C1MEF3 DNA helicase n=1 Tax=Citrobacter sp. 30_2 RepID=C1MEF3_9ENTR Length = 690 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 173/668 (25%), Positives = 280/668 (41%), Gaps = 69/668 (10%) Query: 16 PGFKPREPQRQMAV---AVTQAI---EKGQPLVVEAGTGTGKTYAYLAP----ALRAKKK 65 G PR Q M V A E+ + V+EAGTGTGKT Y P A+ K Sbjct: 25 KGLSPRAGQVDMMAFCSEVVNATPSEEQYRVGVIEAGTGTGKTLGYCLPLIPLAMEKHKT 84 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ 125 +IIST + ALQ+Q+ S+DLP + + + A+ KGRS Y C R + + + Sbjct: 85 LIISTATVALQEQIISKDLPEIQARAGLSFSYAMAKGRSRYFCQMRCDVHMESEMNAYGY 144 Query: 126 ILSDVILL-RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 I DV + ++++ G+ + ++ W V + C CP Y C A Sbjct: 145 IRDDVEDISKAFAGGHWTGERDSYPDEISEA-VWGRVNAIGSQCPKKRCPHYHRCPFFLA 203 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIP--EADVMIFDEAHQLPDIASQYFGQSL 242 R DVV+ NH + L+D+ + G G ++P E + +FDE H +P A +F S Sbjct: 204 RALLDSVDVVIANHDIVLSDLSL---GGGIILPPQEESIYVFDEGHHVPQKAINHFATSA 260 Query: 243 SSR-------QLLDLAKDITIAYRTELKD-TQQLQKCADRLAQSAQDFRLQLGEP----- 289 S ++ D+ + +Y ++ QQL + A D R L Sbjct: 261 SLDASRHFMAEIFDMVMTMPESYGGTMEQHVQQLVEFAGHAGNELGDLRGTLLRSLNWRS 320 Query: 290 ------GYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYR 343 G ++ + L L+ ++ + + +A++D A + Sbjct: 321 DHDMPNGVESDIYRFPEGFVPEAIAALFSPALKTVNEMQNIVVKMTAIVDEAGRDISEDD 380 Query: 344 TRLKRL----------------------KEINQPGYSYWY----ECTSRHFTLALTPLSV 377 L+++ K ++ + W S + +P+ Sbjct: 381 LALQKMAVGELANRLAGMHQALASYCGNKTVSGMPMARWINVRRTKRSTEVVINCSPVYA 440 Query: 378 ADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCV 436 + K + K + I TSAT+ F + G+ +LL SPFDY +L + Sbjct: 441 GEHLKSELWSKAYATIVTSATIRSLSKFDAFLEQAGLPVDTPTLLARSPFDYQNNGVLFI 500 Query: 437 LRN-LPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQ 495 R TN ++ +L ++ G C +L S M ++++ ++ +L+Q Sbjct: 501 PRMRSVPTNHEEHTAEIIELLPKLVLRLQG-CLVLFASRRQMEEVSKAMPQHISPLLLIQ 559 Query: 496 GETSKGQLLQQFV----SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLK 551 G K ++L + +++ +SF EGVD+ G + VII KLPF+ P DP+ + Sbjct: 560 GALPKREILLRHKLRIDRGEPSIIFGMASFSEGVDLPGVYCNNVIIAKLPFSVPTDPVGQ 619 Query: 552 ARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFL 611 E G D F E+ +P+A + L Q VGRLIR D G + I D RL + YG L Sbjct: 620 TLTEWLEKNGRDAFREISIPEACLKLTQSVGRLIRTESDTGAVTILDKRLKTKAYGKDIL 679 Query: 612 ASLPPAPR 619 ASLPP R Sbjct: 680 ASLPPFRR 687 >UniRef50_A4A9L6 ATP-dependent helicase, DinG n=4 Tax=unclassified Gammaproteobacteria RepID=A4A9L6_9GAMM Length = 707 Score = 470 bits (1210), Expect = e-131, Method: Composition-based stats. Identities = 188/686 (27%), Positives = 291/686 (42%), Gaps = 88/686 (12%) Query: 17 GFKPREPQRQMAVAVTQAI------------EKGQPLVVEAGTGTGKTYAYLAPALRA-- 62 G PR QRQM V + E V+EAGTGTGKT AY+ PAL Sbjct: 24 GLTPRWGQRQMIAEVANTLARLSPSMGAADTEGSPIAVIEAGTGTGKTIAYVIPALVMAR 83 Query: 63 --KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA---- 116 K+++I+T + ALQ+QL +DLP + K + L KGR YLCL +L++ Sbjct: 84 ALNKRLVIATATVALQEQLVHKDLPDIKKGSGLDFSFQLAKGRRRYLCLSQLDRLMARES 143 Query: 117 -------LAGGDLPVQILSDVI-----LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTST 164 L ++ + D + +L + + DGD + D+ W VT+ Sbjct: 144 GGGQTMGLYPDEVSPALARDALESYGLMLDALARGDWDGDRDNWSAPINDAD-WFPVTAD 202 Query: 165 NDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIF 224 C G CP ++C +AR +ADVVV NH L L+D+ + G PE + IF Sbjct: 203 QGQCTGRRCPNIRNCSFYRARDGLQEADVVVTNHDLVLSDLALG-GGAILTPPEDTIYIF 261 Query: 225 DEAHQLPDIASQYFGQSL---SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQD 281 DE H LPD A +F S+ L ++ L L + L D Sbjct: 262 DEGHHLPDKALNHFASFCRLPSTLSWLGDSRKALAKGAPLLATLPGLSTVLEPLPALFDD 321 Query: 282 FRLQLGEPGYRG-----------------------NLRELLANPQIQRAFLL-------- 310 +L+L + + +L++ A+ Q A L Sbjct: 322 LQLRLQQIAEKAAAIMASAGDFEEQLRFEGGVVPPDLQQATASLASQWARLTGRLITLEA 381 Query: 311 -LDDTLE------LCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYEC 363 +DD LE + ++ + +L A +L++ E P + W + Sbjct: 382 GIDDALEDESFASVRDELEAWQMAVGGMLVRAEGVLSLFQDFAADAAE-ESPPRARWLKR 440 Query: 364 TSRH----FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAE 418 + L + + AD +E + + I TSAT++ F +R G+ E Sbjct: 441 RADDEELAIDLHCSHILAADILREQLWDRAAGVILTSATMTALGSFDRFRARSGVPEDGR 500 Query: 419 SLLLPSPFDYSRQALLCVLRNLPQTNQ-PGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 ++ SPFDY + A L V + P R+L +L +++A G +L +S M Sbjct: 501 YKIVASPFDYGK-ATLHVPAMKSEPGDAPAHTRELIELLPDLLDAGEG-SLVLFSSRRQM 558 Query: 478 RDLAEQFRATMTLPVLLQGETSKGQLLQQFVS----AGNALLVATSSFWEGVDVRGDTLS 533 D+ + +L Q + SK ++L++ A++ +SF EGVD+ G Sbjct: 559 NDVYDGLPVEWRSRILRQDDYSKQEILRRHRETIDDGRGAVIFGLASFAEGVDLPGGYCQ 618 Query: 534 LVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGV 593 V+I KLPF PD+P+ A E +G + F E+ +PDA + L Q GRL+R D G Sbjct: 619 HVVIAKLPFAVPDNPVDAALAEWLEAQGRNAFMEISVPDAALKLVQASGRLLRTETDVGR 678 Query: 594 LVICDNRLVMRPYGATFLASLPPAPR 619 + + D R++ R YG L SLPP R Sbjct: 679 VTLMDRRVITRRYGRAILDSLPPFQR 704 >UniRef50_C1TS05 DNA helicase, Rad3 n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TS05_9BACT Length = 652 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 195/662 (29%), Positives = 305/662 (46%), Gaps = 51/662 (7%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIE--KGQPLVVEAGTGTGKTYAYLAP 58 MTD F PDG + GF+ R Q +++ AV +E G+ L EA G GKT+A LAP Sbjct: 1 MTDLFGPDGLFCNNLSGFEYRPQQERLSQAVLGLLEGNSGRILAAEAPPGVGKTFALLAP 60 Query: 59 ALRAKKK----VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQ 114 A+ K V++ T S LQ+QL ++DLPT+S+ L LLKGRSNY C+ + + Sbjct: 61 AVTWAKTTGNTVLVLTSSITLQEQLINKDLPTLSEVLGLDVPFGLLKGRSNYACMRKASE 120 Query: 115 QALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCP 174 G ++ W T +GD+S + A ++ + CLG+ CP Sbjct: 121 LGDEGLLSFNDKGEASGVILEWLALTEEGDLSEVP-LPPGHPAVERISGSFRGCLGARCP 179 Query: 175 MYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIA 234 CFV +A + A VVV N+HL+ + + + F A +++ DEAH++P+ A Sbjct: 180 YRDRCFVQRALRNASRWTVVVANYHLYFSYALGRGGAFPV---PARLVLCDEAHRMPEAA 236 Query: 235 SQYFGQSLSSRQLLDLAKDITIAYRTELK------DTQQLQKCADRLAQSAQDFRLQLGE 288 S S + + + EL D Q+ L ++ + F +L Sbjct: 237 SSVSAVSTRMDDWIRHLRRVPSPGLNELGAKTVGYDQQKTLDDVKSLNRAVRLFFERLDS 296 Query: 289 PGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLD-------AAFERATL 341 G + L ++ D L+L V S+ LD Sbjct: 297 SGIKNGLFIEPPEELVREGL----DVLDLAAPVIATGRRFSSYLDDLGPSGEEMARDGAE 352 Query: 342 YRTRLKRLKEI-----------NQPGYSYWYECTSRHFTLALTPLSVADKFKELMA-QKP 389 Y ++ L E+ + P ++YW E + L+ P D P Sbjct: 353 YLAWVQVLDEMGQAFRWCLDVSDYPDWTYWKEDGA----LSSAPSKCGDILPRAFGGDDP 408 Query: 390 GSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSA 449 + SAT++V+ +++ G+E E+LLL SPF S Q L V+ Sbjct: 409 PYMVAVSATMAVDGRFDYWSRETGLEPDEALLLDSPFPLSEQMELLVVDLGIAVTDEKYD 468 Query: 450 RQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR--ATMTLPVLLQGETSKGQLLQQF 507 ++ ++R + + N G +L +S +++ + R + VL+QG+ K +LL++F Sbjct: 469 DRVCRVVRKLCKENGGASLVLLSSTRLLKRVGGYLRRCSGDGYNVLIQGDLPKVELLRRF 528 Query: 508 VSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDE 567 +++LV T SF EGVDV GD+L+ VIID++PF PDDP+ +AR + L G F + Sbjct: 529 REDESSVLVGTVSFREGVDVPGDSLTQVIIDRIPFPHPDDPIQRARRD---LEGPSSFVK 585 Query: 568 VQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP--PAPRTRDIAR 625 LP+A + L+Q VGRLIR DRG + + D RL+ R L SLP P + R + R Sbjct: 586 SVLPNAKMHLRQAVGRLIRSYGDRGRVAVLDGRLLSRR-NWRVLDSLPDVPIRKIRVVDR 644 Query: 626 AV 627 +V Sbjct: 645 SV 646 >UniRef50_C5BWL9 Helicase c2 n=14 Tax=Actinomycetales RepID=C5BWL9_BEUC1 Length = 679 Score = 470 bits (1209), Expect = e-130, Method: Composition-based stats. Identities = 208/650 (32%), Positives = 294/650 (45%), Gaps = 53/650 (8%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 G R Q +MA+AV A + G PL+V+AGTGTGK+ AYL PA+ + +++I+ST + Sbjct: 40 GGTRRAGQHEMALAVAHAFDDGVPLLVQAGTGTGKSLAYLVPAIVRAVTSDERIIVSTAT 99 Query: 73 KALQDQLYSRDLPT----VSKALKYTGNVALLKGRSNYLCLERLEQ-----------QAL 117 ALQ Q+ ++DLP + +L VALLKG NY+C ++ Sbjct: 100 LALQRQILTKDLPLARGVLEASLPRPPAVALLKGWHNYVCRHKVTGGYPAEDEPGLFSLD 159 Query: 118 AGGDLPVQILS---------DVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC 168 G D P + +V+ LR W+ +T GD V + +AW V+ T C Sbjct: 160 GGADHPRRSAEVGEFETLGEEVVRLREWAEETTTGDRDDLVPGVGE-RAWRQVSVTAMEC 218 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAH 228 LG CPM +CF AR+ + ADVVV NH + + G ++PE D ++ DEAH Sbjct: 219 LGQKCPMLAECFPEAARRASRSADVVVTNHAML----GIAAGGSPGVLPEHDGLVVDEAH 274 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE 288 +L D + LS+ R + L +AQ R LG Sbjct: 275 ELADRVTAQATVELSA----------PAVERAARIARRHAGAALAGLDDAAQALRTGLG- 323 Query: 289 PGYRGNLRELLANPQIQRAFLLLDDTLELCYDV----AKLSLGRSALLDAAFERATLYRT 344 G L + L + L E + + G AL+ A L Sbjct: 324 LVPEGRLPDGLPESLVGTVTTLRAAAHEGMSALGPNPPGSTDGAGALVMARSALLVLVEI 383 Query: 345 RLKRLKE-INQPGYSYWYECTSRHF-TLALTPLSVADKFKELMAQKPGSWIFTSATLSVN 402 + L + + Q W E L + PL VA + + + TSATL + Sbjct: 384 ADRLLSDAVAQRRDVLWCERGRDGASRLRVAPLDVAGLVATHLV-ADRAAVLTSATLELG 442 Query: 403 DDLHHFTSRLGIE--QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPII 460 S LG+ + + SPFDY+RQ + V R+LP+ G ++++ A L ++ Sbjct: 443 GSFAPVASSLGLATGAYRAERVASPFDYARQGIRYVARHLPRPGSDGPSQEMLAELAELV 502 Query: 461 EANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSS 520 +A GR L +S A++ R L VL QGE L+++F L T S Sbjct: 503 QAAGGRTLGLFSSRRAAEVAAQEIRDRTGLDVLCQGEDVLPTLVRRFAEEEATSLFGTLS 562 Query: 521 FWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQG 580 W+GVDV GD+ LV ID++PF PDDP+ ARME RGG+PF V A + L QG Sbjct: 563 LWQGVDVPGDSCRLVTIDRIPFPRPDDPVGAARMEVVAARGGNPFMTVAATHAALLLAQG 622 Query: 581 VGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 GRL+R DRGV+ I D+RL YG SLPP T D A A L Sbjct: 623 AGRLLRRTTDRGVVAILDSRLATARYGEFLSRSLPPMWPTTDPAVARAAL 672 >UniRef50_Q21I38 Helicase c2 n=16 Tax=Gammaproteobacteria RepID=Q21I38_SACD2 Length = 720 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 176/700 (25%), Positives = 284/700 (40%), Gaps = 103/700 (14%) Query: 18 FKPREPQRQMAVAVTQAI------------EKGQPLVVEAGTGTGKTYAYLAPAL----R 61 KPR Q+ M + + + +G V+EAGTGTGKT +YL AL Sbjct: 23 LKPRYGQKLMIAEIAKTLGSIQLNADGERQTEGHLCVIEAGTGTGKTVSYLLAALPVAKA 82 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 KKV+++T + ALQ+Q+ +DLP + + N L KGR Y+CL +L++ + D Sbjct: 83 LGKKVVLATATVALQEQVVLKDLPDLIRYADLKFNFCLAKGRGRYMCLSKLDKILTSSDD 142 Query: 122 LPVQILSDVI--------------LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDN 167 L + ++ DGD D W VT+ + Sbjct: 143 TQFIPLYEDEHSEISEFDTKLYTSMMEKLGEGKWDGDRDNWHDEI-DQPVWQRVTTDHRQ 201 Query: 168 CLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIP--EADVMIFD 225 C G +C + C AR+ +AD +V NH L LAD+ + G G ++P E + IFD Sbjct: 202 CTGRNCKFVRQCAFFNARELLDEADCIVANHDLVLADLAL---GGGAILPAPEETIYIFD 258 Query: 226 EAHQLPDIASQYFGQSLSSRQLLDLA-------------------------------KDI 254 E H LPD A +F + + K++ Sbjct: 259 EGHHLPDKALNHFASHTRYKSTIRWLGQSEGQWSNLIEPLTDASYFTQIAAPTEAVFKNV 318 Query: 255 TIAYRTELKDTQQLQKCADRLAQ--SAQDFRLQLGEPGYRGNLRELLANPQIQR-AFLLL 311 L Q+ + + + + R E + + + ++ A L+ Sbjct: 319 RSLMEAHLPHMQEWVYALEASNEKDNDRFRRDDRQESSRQLRFEQGVVPAAMEYLARELV 378 Query: 312 DDTLELCYDVAKLSLGRSALLD----------------AAFERATLYRTRLKRLKEINQP 355 D L+L + KL L++ A L K Sbjct: 379 DAFLDLSMHLGKLHKELETLIEDDYPLVPRVDIETVHGAVGTWLARADGNLSLWKSYADT 438 Query: 356 ------GYSYWYECTSRH----FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDL 405 + W T+ + + + +P+ + ++ + + + TSATL+ + Sbjct: 439 KVIENWPIARWITVTTFNDVMDYEIVSSPILASKALEKDLWSRCCGAVVTSATLTALNSF 498 Query: 406 HHFTSRLGI-EQAESLLLPSPFDYSRQALLCVLRNLPQTN-QPGSARQLAAMLRPIIEAN 463 F R G + + ++PSPFDY +A+L + + N + L II+ Sbjct: 499 DRFKIRSGTYDDSHYSVVPSPFDYPNRAVLRIPSFAVEANFAADHTDSMIEYLPEIIDKK 558 Query: 464 NGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV----SAGNALLVATS 519 G +L +S M ++ +Q A + +L+QG SK L+ +++ + Sbjct: 559 AG-TLVLFSSRKQMLEVFDQLPADFRMLILMQGSQSKQVLVSDHKKRIDEGSGSIIFGLA 617 Query: 520 SFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQ 579 SF EGVD+ G + VII K+PF PDDPL + E RGG+ F ++ +PDA + L Q Sbjct: 618 SFAEGVDLPGKYCTHVIIAKIPFAVPDDPLEASLAEWVESRGGNSFMQITVPDAAMRLVQ 677 Query: 580 GVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPR 619 GRL+R D+GV+ I D RL+ + YG L SLPP R Sbjct: 678 ACGRLLRTESDKGVVTIMDKRLITKRYGQALLNSLPPFKR 717 >UniRef50_Q1QX31 Helicase c2 n=9 Tax=Gammaproteobacteria RepID=Q1QX31_CHRSD Length = 721 Score = 468 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 189/689 (27%), Positives = 283/689 (41%), Gaps = 91/689 (13%) Query: 18 FKPREPQRQMAVAVTQAI------------EKGQPLVVEAGTGTGKTYAYLAPAL----R 61 PR QR M + + + V+EAGTGTGKT AYL AL Sbjct: 30 LTPRYGQRLMIAEIARTLGGIESDDAGRRLSNEHVCVLEAGTGTGKTLAYLLAALPIAQA 89 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 K+++IST + ALQ+Q+ DLP + AL KGR YLC+ RL+Q G D Sbjct: 90 RGKRLVISTATVALQEQVLHHDLPALKAHSGLDFEFALAKGRGRYLCVARLDQALEGGED 149 Query: 122 LPVQILSDVIL---------------LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 P L + + ++S +GD + + +D+ W +T + Sbjct: 150 NPTLSLFEEAMSSGDGDDFQALAQEMADAYSAGRWEGDRDSWPTGIDDAD-WRRLTIDHR 208 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDE 226 C C + C +AR+ ADV+V NH L LAD+ + G P+ + +FDE Sbjct: 209 QCTNRRCGHFGACAFFRARRGLDQADVIVANHDLVLADLSLG-GGLVLPSPKDCIYVFDE 267 Query: 227 AHQLPDIASQYFGQSL---SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFR 283 H LPD A +F L + + L K T L L + L ++ Sbjct: 268 GHHLPDKALDHFYHRLPVNGTLRWLRTLKKSLAELNTALGVQPTLARLLATLPEAIAALE 327 Query: 284 LQLGEP---GYR----------------------GNLRELLANPQ--IQRAFLLLDDTLE 316 +LGE G+R G + E L+ + AF L TLE Sbjct: 328 PRLGEAFAMGHRLAEREEGLPDDATDAVHHRFPMGRVPEALSEQAQSMVTAFAELSRTLE 387 Query: 317 LCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYE-------------- 362 D+ + SL E+A + + L ++ W Sbjct: 388 SMADILRESLDPEKATGLPREQAESWLPLVALLHGRALEAHALWQAMATPDPAEGIPQAR 447 Query: 363 -------CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI- 414 T + +P+S A+ + + TSATL+ + R G+ Sbjct: 448 WLTFERIAGDAELTFSASPVSAAETLARHLWGTCHGAVVTSATLTALNRFERLQERAGLA 507 Query: 415 EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSH 474 + LPSPFDYSR L + +N+ R L + + E ML +S Sbjct: 508 NRYRYQRLPSPFDYSRAVLSVPPEAVDPSNREAHERALIDFTKALDEREA--VLMLFSSR 565 Query: 475 AMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVS----AGNALLVATSSFWEGVDVRGD 530 +R + E T+ V+ Q K +LLQ+ + +++ +SF EG+D+ G+ Sbjct: 566 KQLRAVLEALPETVRERVVAQNHLPKRELLQRHRARVDAGEGSIIFGLASFAEGIDLPGE 625 Query: 531 TLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADD 590 L+ V+I +LPF+ PDDP+ E RGG+PF + +PDA I L Q GRLIR D Sbjct: 626 YLTHVVITRLPFSVPDDPVGATLAEWIESRGGNPFMRISVPDASIRLVQACGRLIRKEAD 685 Query: 591 RGVLVICDNRLVMRPYGATFLASLPPAPR 619 +G + + D R++ R YG L SLPP R Sbjct: 686 QGRITLLDRRVLTRRYGRALLDSLPPFRR 714 >UniRef50_Q482M5 ATP-dependent helicase DinG n=3 Tax=Gammaproteobacteria RepID=Q482M5_COLP3 Length = 712 Score = 467 bits (1201), Expect = e-130, Method: Composition-based stats. Identities = 180/700 (25%), Positives = 298/700 (42%), Gaps = 95/700 (13%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAI-----EKGQPLVVEAGTGTGKTYAYLAPAL---- 60 + + + F PR+ Q + + + + + + + +EAGTGTGK+ AY A+ Sbjct: 16 AIGENLTHFNPRKQQTLLIAEIAKTLAGEYSKDRKIITIEAGTGTGKSLAYSLGAIPLAL 75 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG- 119 KKV IST + ALQ+QL +DLP + K + L KGR Y+C ++L G Sbjct: 76 ARDKKVCISTATVALQEQLVDKDLPFLKKYAGLNFDFTLAKGRQRYVCRQKLTLAVTTGS 135 Query: 120 GDLPVQI---------LSDVILLRSWSNQTVDG----DISTCVSVAEDSQAWPLVTSTND 166 G+ P Q D+ L +DG DI + + W V S Sbjct: 136 GNEPAQAGFTFAEKPDAKDIRTLNKMHKALLDGSWLGDIDSWETHLPQH-IWHQVQSDKH 194 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADVMIF 224 +CL + + C KAR+ A V+VVNH L LAD+ E G G+++ PE I Sbjct: 195 SCL-KNLSEHTHCPFHKARETMDQAHVLVVNHSLLLADL---ELGGGKILSPPEDTFYII 250 Query: 225 DEAHQLPDIASQYFGQSLS---SRQLLDLAKDITIAYRTELK-------------DTQQL 268 DEAH LP + + S++ S + L +D +K D Q L Sbjct: 251 DEAHHLPKVTRDFSSASITLKGSIEWLTKLRDTGDKMAKLIKSKNAISPALKLGDDCQDL 310 Query: 269 ----QKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF------LLLDDTLELC 318 QK + + +A + L+ N + N + F L + E Sbjct: 311 LVEMQKVLNFIEANANVYFLENESSAQNNNFTKNSKNDEQVYRFENGIIPQTLKNWAEDL 370 Query: 319 YDVAKLSLGRSALL------------------DAAFERATLYRTRLKRLKEINQ------ 354 ++K SL L + A RL+ L+ + Sbjct: 371 QSLSKKSLSHLNKLYNGLIEAVKDGDTQMYVAEPLLAEAGFMLQRLENLQSLWFMYAKSD 430 Query: 355 ----PGYSYWYE---CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHH 407 + W E + + L+ +P+ V + ++ + + SATL + H Sbjct: 431 SDKGAPMARWLEKITLKRQDYLLSASPIEVGFTLENMLWSQCEGAVLCSATLRALNSFDH 490 Query: 408 FTSRLGI---EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANN 464 F ++G+ + ++ + SPFDY + L + + + + P ++ A L ++ Sbjct: 491 FRFQVGLKNNDGSQYQQVDSPFDYQNNSQLVIAKMDNEASAPEFTDEVIAKLPKYLKQ-G 549 Query: 465 GRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLL----QQFVSAGNALLVATSS 520 +L +S+ M +A R L +++QGE S+ Q++ ++ +++ T S Sbjct: 550 NASLVLFSSYWQMNKVALALREDHKLEIMVQGELSRQQIIALHKKRCDDNKESIIFGTQS 609 Query: 521 FWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQG 580 F EG+D+ GD L+ +II KLPF+ P P+ +A+ E +GG+PF + +PD L Q Sbjct: 610 FSEGLDLPGDYLNNLIITKLPFSVPTSPVEQAQAEYVTAKGGNPFMTLSVPDTSKKLVQA 669 Query: 581 VGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 GRL+R+ D GV+ + D R+V + YG L SLPP R Sbjct: 670 CGRLLRNEMDEGVITLLDKRVVTKRYGKQLLDSLPPFSRV 709 >UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atopobium RepID=C8W8J2_ATOPD Length = 978 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 194/686 (28%), Positives = 295/686 (43%), Gaps = 80/686 (11%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + FA G +++ F+ R Q M+V V A+ +EAGTG GK+ AYL P Sbjct: 277 IHRAFAKPGVVSQMYDKFETRSEQVSMSVEVRNALVTSSHRELEAGTGIGKSIAYLLPEA 336 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 A + V I+T + AL DQL + DLP +++AL + LKG +Y CL R+++ A Sbjct: 337 LFAQKNDVTVGIATKTNALTDQLVTHDLPALARALPNGLSFCSLKGYEHYPCLHRVDRAA 396 Query: 117 L-------------AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTS 163 L + + +L+ + ++ +++ Q+ DGD+ + S +VT Sbjct: 397 LEELPLTLIDQEGRSSNSVASDMLTAIAVIYAYACQSADGDLDAL-GIRWRSVPREMVTI 455 Query: 164 TNDNCLGSDCPMY-KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVM 222 CL S CP Y +CFV ARK+A +DVVV NH L L ++ G+++P Sbjct: 456 KAAECLRSKCPYYPHECFVHGARKRAGSSDVVVTNHSLLLRNVAAD----GKILPPIRHW 511 Query: 223 IFDEAHQLPDIASQYFGQSLSSRQ-------------------------------LLDLA 251 + DEAH A + +S+++ L L Sbjct: 512 VIDEAHGFEAEARHQWAIEISAKEMRNGFELLGGIKSGAIHAAMVGAANLEDSTLLTGLL 571 Query: 252 KDITIAYRTELKDTQQLQKCADRLAQSA------QDFRLQLGEPGYRGNLRELLANPQIQ 305 A + + L LA A +L + + + Sbjct: 572 TRSAAAVQRAMAAMGNLMVAVHELAPLAKSDGGYNSLQLWINDEVRETKEWKEFLETASV 631 Query: 306 RAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLK---EINQPGYSYWYE 362 L + L + L+ L E T L+ LK + Y Y + Sbjct: 632 ALSALEEAALRIGKTTEALTASAPNLASNLSESGMFLSTLLESLKLICDGTDKSYVYSAK 691 Query: 363 CTS-----RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-- 415 T L L + + E + S +FTSAT++V DD HF +G++ Sbjct: 692 LTRLKRDIGSEALVAEKLDIGAELAEKWLPETHSVVFTSATIAVGDDFSHFEHAVGLDRG 751 Query: 416 --QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTS 473 + +SL L S FDY + V ++P PG L +L + G L T+ Sbjct: 752 SFEHKSLHLDSSFDYENHMGVFVAEDMPTPTDPGYLDALEKLLFDVHVQMGGSVLTLFTN 811 Query: 474 HAMMRDLAEQFRATM---TLPVLLQGETSKG-QLLQQFVSAGNALLVATSSFWEGVDVRG 529 M L E + L + Q +S ++ ++F++ N L A SFWEG D G Sbjct: 812 RRDMERLYEALEPRLSEYGLTLACQERSSSARRIREKFLAEKNLSLFALKSFWEGFDAAG 871 Query: 530 DTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDAD 589 DTL V+I KLPF SP++PL+K R +R + LP+AVI KQ GRLIR A+ Sbjct: 872 DTLRCVVIPKLPFASPNEPLVKER----EVREDRAWWRYSLPEAVIATKQAAGRLIRSAE 927 Query: 590 DRGVLVICDNRLVMRPYGATFLASLP 615 D+GVLV+ D+RLV + YG++FL SLP Sbjct: 928 DKGVLVLADSRLVSKRYGSSFLKSLP 953 >UniRef50_A1U100 Helicase c2 n=3 Tax=Marinobacter RepID=A1U100_MARAV Length = 725 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 195/703 (27%), Positives = 291/703 (41%), Gaps = 106/703 (15%) Query: 19 KPREPQRQMAVAVTQAI-----EKGQP------LVVEAGTGTGKTYAYLAPAL----RAK 63 + R QR M + + + GQ VVEAGTGTGKT AYL A+ Sbjct: 25 RARYGQRLMIAEIARYMGEITDNDGQRTSPPATCVVEAGTGTGKTLAYLIAAIPVAKALG 84 Query: 64 KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP 123 K ++IST + ALQDQ+ +DLP + K K + L KGR YLC+ RLE + G Sbjct: 85 KTLVISTATVALQDQIVLKDLPDLRKHSKLDFSWTLAKGRGRYLCMSRLEARLHDEGHGD 144 Query: 124 VQILSDVI-----------------LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 + + +L S+ ++ DGD D + W VT+ + Sbjct: 145 SDTMPLFLLDQPVDDEARSRATFENMLASYGSRDWDGDRDHWPEQIPD-EIWRQVTTDHR 203 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADV--MIF 224 C C + C ARK DADVVV NH L LAD+ + G G ++PE + IF Sbjct: 204 QCTNRHCAYFDSCAFFDARKDLDDADVVVANHDLVLADLAL---GGGAILPEPENALFIF 260 Query: 225 DEAHQLPDIASQYFGQSL---SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQD 281 DEAH LPD A +F S+ S+RQ L + + L Q K ++++ + +D Sbjct: 261 DEAHHLPDKALNHFAASVPLNSTRQWLKQLSQALVKMQPWLPAGSQAAKAVEKISTAGRD 320 Query: 282 FRLQLGEPGYR----------------------GNLRELLANPQIQ---------RAFLL 310 L L G L E LA + R Sbjct: 321 LDLALTRVYEEVEQNTGWEFNEERRSAQWRYPDGALPEKLAELAGETRIATAGLCRHLGT 380 Query: 311 LDDTLELCYDVAKLSLGRSALLDA-----------AFERATLYRTRLKRLKEINQ----- 354 L D L+ +D K D+ A ++ L+ + + ++ Sbjct: 381 LVDELQSAFDERKDPELDRDTADSWYPVVGSFHARAEDQLRLWIAWSEGVAIVSDEEEPV 440 Query: 355 --------PGYSYWYECTS----RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVN 402 P + W TL +P+ + + + + TSATL+ Sbjct: 441 VEAPARKGPPAARWAVRQRWDHAEDITLFSSPVLADNLLYSRLWSRAYGAVLTSATLTAL 500 Query: 403 DDLHHFTSRLGIEQA-ESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIE 461 SR G+ +A L++PS F Y+ A + V + G A L L + Sbjct: 501 GRFDRLRSRAGLPEASRYLVVPSSFRYAEMATVEVPAMVAMPTDDGFADALVKRLPEL-W 559 Query: 462 ANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQ----QFVSAGNALLVA 517 A +L TS M+ + + +L Q + +K ++L+ + ++L Sbjct: 560 AGEKATLVLFTSRRQMQQVRDALAPEYPELILTQDDMAKNEVLRVHCSRVDEGKPSVLFG 619 Query: 518 TSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITL 577 +SF EG+D+ G L V+I +LPF+ PDDP+ + E RGG+PF E+ +PDA + L Sbjct: 620 VASFAEGIDLPGRYLHHVVITRLPFSVPDDPIEASLAEWVTQRGGNPFMEITVPDASVKL 679 Query: 578 KQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 Q VGRL+R D G + I D R+V R YG L +LPP R Sbjct: 680 VQAVGRLLRTEQDTGRVTILDRRIVARRYGQLLLDALPPFRRI 722 >UniRef50_Q2SIT1 Rad3-related DNA helicase n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIT1_HAHCH Length = 718 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 179/687 (26%), Positives = 288/687 (41%), Gaps = 87/687 (12%) Query: 19 KPREPQRQMAVAVTQAI------------EKGQPLVVEAGTGTGKTYAYLAP----ALRA 62 KPR QR M + + + VVEAGTGTGKT AYL A Sbjct: 24 KPRSGQRHMIAEIARYLSSIELDGEFRRSNDATTCVVEAGTGTGKTLAYLMASIPFAAAL 83 Query: 63 KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA------ 116 +KK++IST + LQ Q+ R+LP +++ VAL KGR Y+CL +L+ Sbjct: 84 RKKIVISTATVTLQQQVVQRELPLLAEHTDLEFKVALAKGRGRYICLHKLDSYLAGQEQG 143 Query: 117 ---LAGGDLPVQILSDVILLRSWSNQTVD----GDISTCVSVAEDSQAWPLVTSTNDNCL 169 L G D + + N VD GD + E+S W VT+ + CL Sbjct: 144 ILLLDGPQESSGPDVDAEAYQRFMNWMVDKGWSGDWDSAPEPIEES-LWSTVTTDHRQCL 202 Query: 170 GSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQ 229 C + C KA+ ++ A+++V NH L AD+ + GF PE + IFDEAH Sbjct: 203 NKRCSFFTQCAYYKAKMESEKAEIIVANHDLVFADLALG-GGFVLPPPEETIYIFDEAHH 261 Query: 230 LPDIASQYF----GQSLSSRQLLDLAK-------------DITIAYRTELKDTQQLQKCA 272 + D A +F G S + L L++ IT +Q++ Sbjct: 262 MADKALNHFAFSAGLKSSQKMLRGLSRALVEGQSVFAYDEQITNRVSPMAALSQEVHHHL 321 Query: 273 DRLAQSAQD--------------FRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELC 318 D +A+ + +R +G ++ L+ L+ Sbjct: 322 DAVARFLNETIEWEENDERATFQYRYPMGVIPEELRKLSAAMADKVGEMTKELEAVLKRL 381 Query: 319 YDVAKLSL---GRSALLDAAFERATLYRTRLKRLKEIN-------QPGYS-------YWY 361 ++A+ + D A ++Y+++++ L+++ Q G++ W Sbjct: 382 RELAEKEQPGGAQRQAYDQAVMALSVYQSQVENLEDVWRIMGEEVQEGHTPTARWLTTWA 441 Query: 362 ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL 421 + T + ++P + A ++ + + + TSATLSV ++G+ + Sbjct: 442 KETDSDVVVHVSPTNAAHLLRKRLWSRAFGCVLTSATLSVAGRFDRLAGQVGLPDGSTFA 501 Query: 422 LP-SPFDYSRQALLCVLRNLPQT-NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 + SPFD++ L + + L+ L II+ +L ++ M+ Sbjct: 502 IHHSPFDFNNNCTLELCDLGRDPQDSESYLEMLSQALLRIIDEKQA-TLVLFSARKHMQF 560 Query: 480 LAEQFRA-TMTLPVLLQGETSKGQLLQQFV----SAGNALLVATSSFWEGVDVRGDTLSL 534 A + ++ Q +KGQL+ ++L +SF EG+D+ GD L Sbjct: 561 AARALADTKLGSLIITQDSGNKGQLIDTHRSRVDENKGSVLFGLASFAEGLDLPGDYLKH 620 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 VII KLPF PDDP+ E + +GG+PF++V LPDA+ L Q GRL+R D G + Sbjct: 621 VIIAKLPFAVPDDPVEATYAEWLKSKGGNPFNQVVLPDAITRLLQACGRLLRSERDSGKI 680 Query: 595 VICDNRLVMRPYGATFLASLPPAPRTR 621 I D RL R YG L +LPP Sbjct: 681 SIMDRRLWTRSYGRIILNALPPYKVVS 707 >UniRef50_Q2BMS2 Helicase, putative n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMS2_9GAMM Length = 707 Score = 464 bits (1195), Expect = e-129, Method: Composition-based stats. Identities = 182/688 (26%), Positives = 286/688 (41%), Gaps = 90/688 (13%) Query: 17 GFKPREPQRQMAVAVTQAI-----------EKGQPLVV-EAGTGTGKTYAYLAPAL---- 60 G K R Q+ M V + + E G + V EAGTGTGKT AYL ++ Sbjct: 22 GLKARYGQKMMIAEVARTLGSINSNHEGVREGGNHICVTEAGTGTGKTMAYLLASVPIAQ 81 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 KKV++ST + ALQ+QL +DLP + L KGR Y C+ E+ Sbjct: 82 ARNKKVVVSTATVALQEQLILKDLPQLVTEAGINLTYGLAKGRGRYFCISNAEKVLEQQN 141 Query: 121 DLPVQILSD---------------VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTN 165 +L L + LL +++ DGD + V D W L TS + Sbjct: 142 ELGQIALYEDEVAQKLDQEVILEVKGLLSQYASGEWDGDRDSLVDTVPD-PIWQLSTSDH 200 Query: 166 DNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADVMI 223 C C + C AR++ D++V NH L LAD+ + G G ++ PE + I Sbjct: 201 VRCTNRRCSNFSSCPFFLARQQLDKWDLIVANHDLVLADLSL---GGGAILSPPEDTIYI 257 Query: 224 FDEAHQLPDIASQYFGQSL---SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQ 280 FDE H L + +F SL SS + L E + L D+LA Sbjct: 258 FDEGHHLSTKTTGHFAYSLRIKSSIRWLSTVTRTLNKLLNEASEHVVLISYIDKLATPFS 317 Query: 281 DFRLQLGE---------------PGYRGNLRELLANPQIQRAFLLLDDTLE-------LC 318 D L E P R + + +Q + L L E Sbjct: 318 DMERSLQEMQTLLNMLLEDKLSGPSDRYRFAQGIIPESLQLSALNLAQAAERVVLKFEQI 377 Query: 319 YDVAK------LSLGRSALLDAAFERATLYRTRLKRLKEINQP----------GYSYWYE 362 D+ K L+ + + F + + +R++ + + + + W + Sbjct: 378 VDLLKEGMDGELADLPREMGEKWFPQIGAFHSRVQSIYGLARSYSASDQTGALPTARWIQ 437 Query: 363 CTSRHFTL----ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QA 417 + + +P+S AD +E + + + TSATL+ + LGI + Sbjct: 438 KVDGNEGIDLACHSSPVSAADNLEEHLWSQCYGAVVTSATLTALGRFDRLYTDLGIPSDS 497 Query: 418 ESLLLPSPFDYSRQALLCVLRNLPQTNQPG-SARQLAAMLRPIIEANNGRCFMLCTSHAM 476 + SPFD+ A L V P ++++ L ++ +L +S Sbjct: 498 PCAVFNSPFDFQNAAQLRVPAMKTDPGNPDLHNQEISDYLIQLLP-TETSALVLFSSWRQ 556 Query: 477 MRDLAEQFRATM-TLPVLLQGETSKGQLLQQFVS----AGNALLVATSSFWEGVDVRGDT 531 MR + + AT+ +L+QG+ +K ++L+Q +++ +SF EGVD+ G Sbjct: 557 MRYVLDAMPATIVADSILVQGDLAKHEILRQHREKIDQQKASIIFGLASFAEGVDLPGKY 616 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 L+ VII KLPF PDDP+ E +G +PF+E +P A + L Q GRL+R +D+ Sbjct: 617 LTHVIITKLPFGVPDDPVDATYSEWIESQGRNPFEEWVIPMASMRLTQATGRLLRTEEDK 676 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAPR 619 G + + D R + R YG LA+LPP R Sbjct: 677 GDITLLDRRFITRRYGKQLLAALPPYRR 704 >UniRef50_Q47MW9 Helicase c2:DEAD/DEAH box helicase, N-terminal n=12 Tax=Actinomycetales RepID=Q47MW9_THEFY Length = 706 Score = 459 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 207/660 (31%), Positives = 296/660 (44%), Gaps = 65/660 (9%) Query: 21 REPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKKVIISTGSKALQ 76 R+ Q MA +V AI+ + LVV+AGTGTGK+ YL PALR V++ST + ALQ Sbjct: 51 RDGQATMARSVAAAIDSREHLVVQAGTGTGKSLGYLVPALRHAVAANATVVVSTATIALQ 110 Query: 77 DQLYSRDLPTVSKA----LKYTGNVALLKGRSNYLCLERL-------EQQALAGGDLPVQ 125 +QL RDLP +++A L A+LKGR NYLC RL E+ L L Sbjct: 111 NQLIGRDLPRLTEALEPLLGRRPVYAILKGRRNYLCRYRLSQAATGPEEAELFDPHLLSS 170 Query: 126 ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD-CPMYKDCFVVKA 184 + V L W+ +T+ GD D AW V+ + C+G CP+ DCF A Sbjct: 171 LGRQVRRLHEWAEETLTGDRDDLTPGVSD-LAWRQVSVGANECIGPQMCPVSDDCFAELA 229 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 R + + AD+VV NH L D V L+P+ D++I DEAH+L D + LS Sbjct: 230 RAETIGADLVVTNHALLAIDAVQ----GYRLLPDHDLLIVDEAHELVDRVTSVATGVLSD 285 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLAN--- 301 R + AK EL T++L + AD LA L PG +L + LA Sbjct: 286 RSISLAAKRAAPVCDVEL--TERLAETADGLA-----LMLADTPPGRLDHLPDPLATAVA 338 Query: 302 ---PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYS 358 L + A A L+ T R L + + Sbjct: 339 AVRDAAHACLSALPEPPRDDPHAASARRLALAGLEEVH--CTAERILLCVQQPLRDRQDV 396 Query: 359 YWYECTSRHF-TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-- 415 W+ +R L + PL+V ++ + + + + TSATL++ + G+ Sbjct: 397 VWFARGARQTPGLRIAPLAVNRTLRQALFTE-RTTVLTSATLALGGSFDLMARQWGLGPL 455 Query: 416 -------------------------QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSAR 450 + ++ + SPF+++R +L + +LP + Sbjct: 456 PDHDPAEAAEPAETTATPSAEPSPLRWRAIDVGSPFNHARSGILYIATHLPPPGRESLHP 515 Query: 451 QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSA 510 + + +I+A GR L +S AE+ R + P+L QG+ S G L+QQF + Sbjct: 516 EYLDEMAELIDAAGGRTLGLFSSTRAAVHAAEELRERLPYPILCQGDDSTGHLVQQFAAD 575 Query: 511 GNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQL 570 L T S W+GVDV G L LVI+D++PF PDDPL AR +GG+ F EV Sbjct: 576 EATCLFGTLSLWQGVDVPGPALQLVIVDRIPFPRPDDPLASARQRAIGAQGGNGFLEVAA 635 Query: 571 PDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 A + L QG GRL+R D+GV+ + D RL YGA ASLPP T D A L Sbjct: 636 THAALLLAQGTGRLLRSVHDKGVVAVLDPRLATARYGAFLRASLPPYWGTTDPQVARAAL 695 >UniRef50_A1WTY2 Helicase c2 n=1 Tax=Halorhodospira halophila SL1 RepID=A1WTY2_HALHL Length = 711 Score = 459 bits (1181), Expect = e-127, Method: Composition-based stats. Identities = 173/696 (24%), Positives = 287/696 (41%), Gaps = 89/696 (12%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQP---LVVEAGTGTGKTYAYL---APALRAK 63 ++ +PGF+ RE Q++M V +A + P L +EA TGTGK+ +YL P R++ Sbjct: 16 RVRDEMPGFREREAQKRMIWEVAKAFDADHPHRLLAIEAPTGTGKSLSYLLGGVPVARSR 75 Query: 64 K-KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL 122 ++I+T + LQ+Q+ +DLP +++ + + KGR YLC L + G Sbjct: 76 DLPLVIATATVGLQEQILHQDLPKLARYAGIEVDATVAKGRGRYLCPRNLNELVGQSGQA 135 Query: 123 ----PVQILSDVILLRSWSN-------------------QTVDGDISTCVSVAEDSQAWP 159 + +V+ W + GD+ D P Sbjct: 136 ESGAQQALAGEVLGTARWPRPPQPGEPEQLQAMAEALDGERWGGDLDEWADGVAD-DLRP 194 Query: 160 LVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEA 219 ++TST+ +C G C ++ C V AR + A+VV+ NH L LAD+ + E G L+P Sbjct: 195 MITSTSHSCSGRRCAHFEGCPVYAARDRVARAEVVITNHDLLLADLQLGEEQGGVLLPPP 254 Query: 220 D--VMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDIT-------------IAYRTELKD 264 + + + DE H L A Q F S + ++ A + Sbjct: 255 EQALYVIDEGHHLAAKAVQRFAASARVQAARTWLEEGEGVATDTAAVLPDDTAGEPPDAE 314 Query: 265 TQQLQKCADRLAQSAQD------FRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELC 318 Q+LQ+ +A + Q+ + G R R A ++ + D Sbjct: 315 AQRLQERLSEVAAALQEADTFLQHNYRADAEGERWRFRAGQAPDPVRELAGRVADPARGL 374 Query: 319 YDVA-----------KLSLGRSALLDAAFERATLYRTRLKRLKEINQ----------PGY 357 ++ + G + L+ R R R L Q P Sbjct: 375 HEALQAFTDRVYSALEAQRGDTQELERQLPRLGFLRERAANLATTWQLLGEQEAAGVPPV 434 Query: 358 SYWYECTSR-----HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL 412 + W E + ++++P+SVA + + + + TSATL H S L Sbjct: 435 ARWVERQAESDGAVDHRVSVSPVSVAGELARRLWDRCAGAVITSATLRALGRFDHLRSDL 494 Query: 413 GIEQAESLL----LPSPFDYSRQALLCVLRNLPQT-NQPGSARQLAAMLRPIIEANNGRC 467 G+ + ++L+ LPSPFDYSR +LL V N ++ L +++ Sbjct: 495 GLPEDDALISQGWLPSPFDYSR-SLLHVPALRSDPRNAEAHLAEVCQWLPELLDPYEA-A 552 Query: 468 FMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVS----AGNALLVATSSFWE 523 +L TS M +A+ T+ + QGE S+ +L++ ++L + E Sbjct: 553 LVLFTSRQRMERVAQALPETLREQLQCQGERSREAMLERHREAVDAGQGSILFGLAGMAE 612 Query: 524 GVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGR 583 GVD+ G V+I+++PF P +P++ E + F + LP A + L Q GR Sbjct: 613 GVDLPGRYCDHVVIERIPFGVPTEPVIATLGEWLEDQQRSSFHTLSLPRASLRLIQACGR 672 Query: 584 LIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPR 619 L+R DDRG + I D R+V + YG L +LPP R Sbjct: 673 LVRSEDDRGRITILDRRVVTQRYGRQLLDALPPFRR 708 >UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4FB13_9ACTN Length = 977 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 188/696 (27%), Positives = 302/696 (43%), Gaps = 74/696 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + FAP G + + PG++PR Q QMAV V A+ V+EAGTG GK+ AYL P Sbjct: 284 IEERFAPGGLVNRMYPGYEPRSEQVQMAVEVRDALATSTHRVIEAGTGVGKSIAYLVPMA 343 Query: 61 RAKKK----VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQ-- 114 ++ V I+T S L DQL +LP +++ + LKG +Y CL +L++ Sbjct: 344 ELARRNKVTVGIATKSNNLADQLIYHELPRLAREMDGGLTYCALKGYDHYPCLRKLDRLA 403 Query: 115 --QALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD 172 Q + P L+ + +L +++ Q+ GD + S +T+++ C Sbjct: 404 RAQEIKTNRDPADTLTAIAVLYAFACQSPTGDFDGL-GIRWRSVNKADLTTSSRECARRL 462 Query: 173 CPMY-KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLP 231 CP Y C V +R++A DVVV NH L ++ + G+++P + DEAH + Sbjct: 463 CPFYPDKCMVHGSRRRAARVDVVVTNHSLLFRNVAAE----GKILPPIRHWVVDEAHSIE 518 Query: 232 DIASQYFGQSLSSRQ----LLDLAKDITIAYRTELKD--------------------TQQ 267 A + + +S+ + L D A +D TQ+ Sbjct: 519 SEARRQWAIKVSADESRAVFERLGGDRAGALGKIARDLALSDAATLFMGLTVKASSSTQR 578 Query: 268 LQKCADRLAQSAQDF-RLQLGEPGY-------RGNLRELLANPQIQR----AFLLLDDTL 315 L + ++ R E GY +LR+ + + A LD+ Sbjct: 579 ASLAMAELFDAVRELARAARSEGGYDNANMWIGNDLRDSMVWTGFEEVGRTALDALDEAT 638 Query: 316 ELCYDVAKLSLGRSALLDAAF----ERATLYRTRLKRLKEINQPGYSYWYECTSR----H 367 + + + L R R L+ + + Y Y + R Sbjct: 639 KNLASLVETVAEEKPDLVTDVADGQRRMRELRDGLRLILDGADDRYVYSCQVNRRLKAGG 698 Query: 368 FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-----AESLLL 422 L L V + E + + IF SAT++V+D HF +G+++ + S+ L Sbjct: 699 ECLTAERLDVGEALAEEWLPEVHTAIFASATVTVSDSFDHFQHAVGLDRISSSSSRSVHL 758 Query: 423 PSPFDYSRQALLCVLRNLPQTN-QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 S +D+ R + V ++P + L +L + A G L T+ M +L Sbjct: 759 DSSYDFERNMAVVVASDMPDPRSRDAYLSALETLLVDVHLAMGGSTLTLFTNRRDMEELY 818 Query: 482 EQFRATM---TLPVLLQGETSKGQLLQ-QFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 ++ + L + Q T+ ++L+ +F+S + L A +FWEG D GDTL V+I Sbjct: 819 DRVEPRLAQRGLALDCQRRTTSAKILRDRFLSNEKSSLFALKAFWEGFDAAGDTLRCVVI 878 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 KLPF SP DPL R + LP+AV+ +KQ GRLIR + D GVLV+ Sbjct: 879 PKLPFASPSDPLSCERGAREDR----AWARYSLPEAVLEVKQAAGRLIRTSTDAGVLVLA 934 Query: 598 DNRLVMRPYGATFLASLP-PAPRTRDIARAVRFLAI 632 D+RLV + YG FL SLP P R + + R+L + Sbjct: 935 DSRLVSKGYGKKFLNSLPAPHQRIE-VRQVGRYLEM 969 >UniRef50_A3EQ06 Probable ATP-dependent DNA helicase n=2 Tax=Leptospirillum sp. Group II RepID=A3EQ06_9BACT Length = 738 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 195/702 (27%), Positives = 296/702 (42%), Gaps = 94/702 (13%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAI----------EKGQPL-VVEAGTGTGKTYAYLAP 58 +L++ +PGF R QR M V + + GQ L V++ TGTGKT AYL Sbjct: 32 RLSRTLPGFAARPGQRAMIAEVARTFSRCREEGEPSKDGQNLSVIQGPTGTGKTMAYLLA 91 Query: 59 ----ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL-- 112 A KK +++ST + +LQ+QL ++D+P +++ L L KGR YLC L Sbjct: 92 GIVLARSRKKTLLVSTATVSLQEQLVTKDIPQLARVLDNPPVYELAKGRGRYLCERNLLS 151 Query: 113 -----EQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDN 167 A L + LR + DGD DS W L+ + + Sbjct: 152 LTDLQAGNAFWKHPPSASELDLLDRLRGDFPDSWDGDRDHLPVSVPDS-LWSLIQNQGTS 210 Query: 168 CLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEA 227 C G CP+Y C ++ AD+VV NH L L+D+V+ G PE +++FDEA Sbjct: 211 CTGKRCPLYSRCPFFLKKEAFSRADIVVANHDLVLSDLVLG-GGILLPSPEKSLLVFDEA 269 Query: 228 HQLPDIASQYFGQSLSSR-------QLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQ 280 H LP + +F +SL ++ L + I+ + +D + +Q A+ L S Sbjct: 270 HHLPGKSLSHFRESLDLEGLAPWIERIPGLLERISAFFDVRERD-KTVQAQAEALTNSLM 328 Query: 281 DFRLQLGEP--------------------GYRGNLRELLANPQIQRAFLLLDDTLELCYD 320 L E +RG+ + L + + D + Sbjct: 329 TLGTWLEEHWEGKPAGSFSSETEQDGANGIFRGSREQSLWRFPGGKFPDAMIDPSRIGAS 388 Query: 321 VAK-----LSLGRSALLDAA--------FERATLYRT------------RLKRLKEINQP 355 A+ L L R L +A ER + RL L E P Sbjct: 389 AARVLAERLQLERDKLAEATTGSDVRRNRERDAFFLDVGVHLEKTLDAVRLLSLYEKVDP 448 Query: 356 G--------YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHH 407 + W E + L +P+ A +E++ ++ + TSATL Sbjct: 449 EGKAPFARWATMWKESGTFSHRLEASPVWPATLLEEVLWRRVSACCLTSATLMSLGSFKS 508 Query: 408 FTSRLGIE---QAESLLLPSPFDYSRQALLCVLRNLPQTNQ-PGSARQLAAMLRPIIEAN 463 F+SR G+ L L SPF RQ +L + R++ L ++ Sbjct: 509 FSSRCGLSMLTGVSFLSLDSPFPLDRQGVLSLPVMRSDPTDFESHTREIVESLPAVLSPT 568 Query: 464 NGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLL----QQFVSAGNALLVATS 519 G +L +S M + + VL+QGE S+ +L Q+ + ++L S Sbjct: 569 GG-ALVLFSSRRQMEAVRKGLSPEWQNRVLVQGERSRKDILALHEQRVRAGEASVLFGLS 627 Query: 520 SFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQ 579 SF EG+D++GD + V+I K+PF P +P+ + E R RGGDPF E+ LP+A + L Q Sbjct: 628 SFSEGLDLKGDLCTHVVIAKIPFPVPTEPVEETLSEWIRSRGGDPFREIALPEAGLRLVQ 687 Query: 580 GVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTR 621 GRLIR DRG++ I D RL+ + YG L SLPP R Sbjct: 688 AAGRLIRSETDRGIVTIFDKRLLEKNYGVHLLRSLPPFRLER 729 >UniRef50_C9M767 Putative ATP-dependent helicase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M767_9BACT Length = 639 Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 186/650 (28%), Positives = 305/650 (46%), Gaps = 41/650 (6%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQ-AIEKGQPLVVEAGTGTGKTYAYLAPA 59 M D F DG L+ +P F+ RE Q ++A A++Q + + EA TGTGKTYA + PA Sbjct: 1 MEDIFGSDGLLSMGMPEFEVREGQGELADAISQFLLSDERVFAAEAPTGTGKTYAVMVPA 60 Query: 60 L----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLER---L 112 + R +++++ T S LQ+QL +D+P + AL LLKGR +Y CL + L Sbjct: 61 MLWAQRYGRRLLVLTSSVTLQEQLADKDIPALQAALGLELRCCLLKGRGHYACLRKALSL 120 Query: 113 EQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD 172 + D LS + +WS +T GD++ A + + S++ CLG Sbjct: 121 GDEGFLSFDGDDGQLSQ--RIVAWSGETETGDLAELSLSA-NHPVLARIVSSHQTCLGKL 177 Query: 173 CPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIP-EADVMIFDEAHQLP 231 CP CF +A ++A ++DVVV N+H + A + GE P D+++ DEAH + Sbjct: 178 CPCRDRCFYRRAMRRASESDVVVSNYHKYFAYRL-----DGEEFPIPCDLIVCDEAHAMS 232 Query: 232 DIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQ-----LQKCADRLAQSAQDFRLQL 286 A S + + + + A ++ L+ ++ L L A++ L L Sbjct: 233 ASARSVAAVSSRRGEWDHVLRHVPPAVKSLLETSEGDSEKALADVLTSLRAQAEELFLYL 292 Query: 287 GEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA-AFERATLYRTR 345 P + ++ + L L V + A + A Sbjct: 293 QLPQPENSPNNPYSDRVLASGGELTGGASRLAERVLSHPPAEDDEGNLPAVQWALGLSDM 352 Query: 346 LKRLKEINQ----PGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGS-WIFTSATLS 400 +RL + P ++YW++ H +L +P++ A E++ + SAT++ Sbjct: 353 ARRLNQCCDTSRWPEWAYWHD----HESLKCSPVTGAPMISEVLDTPDAPKIVAVSATMT 408 Query: 401 VNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPII 460 V+ + + + G+ E+ ++PSPF+ S Q + V+ + ++A + R Sbjct: 409 VDGKFNFWAAETGLWPDETRIMPSPFNLSEQMSVHVVDLGVRVMDREYGERVAKVCRRYC 468 Query: 461 EANNGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQGETSKGQLLQQFVSAGN--ALL 515 N G +L +S ++ +A + VL QG+ +LL QF +L Sbjct: 469 VRNKGATLVLLSSRRLLESVAGYLKGHASADGYCVLAQGDKPSAELLAQFRKNDGEAKVL 528 Query: 516 VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVI 575 V +SF EGVDV GD L+ VIID++PF+ PDDP+++AR L GG F V+LP A + Sbjct: 529 VGLASFREGVDVAGDALTQVIIDRIPFSHPDDPIVQARR---ALEGGKYFTAVELPGAKM 585 Query: 576 TLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIAR 625 L+Q +GRLIR D G +VI D+R+ + F+ SLPPAP R + + Sbjct: 586 RLRQAMGRLIRSKTDHGRVVILDSRITQKQ-QWKFIDSLPPAPLKRVVVK 634 >UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRP7_FIBSS Length = 905 Score = 457 bits (1175), Expect = e-127, Method: Composition-based stats. Identities = 180/663 (27%), Positives = 313/663 (47%), Gaps = 58/663 (8%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 +++ F G ++ + +KPR Q+ A + + + KG V+EA TG+GKT +YL A Sbjct: 226 VSEFFKEGGFISFVVDDYKPRHNQQDFASVMERNMYKGGLCVLEAPTGSGKTLSYLITAA 285 Query: 61 R---AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL 117 ++V+IST ++ LQ+QL++ +P ++K A+LKGR NYLCL + E+ + Sbjct: 286 NKAITGERVLISTATRTLQEQLWTEAIPQIAKIYNGELRPAILKGRDNYLCLRKFEELLM 345 Query: 118 AGGDL-PVQILSDVILLRSWSNQTVDGDISTCVSVAE--DSQAWPLVTSTNDNCLGSDCP 174 L + + L W T GDI+ C S ++ + W ++ + C G + Sbjct: 346 HPQTLLSAEERDSFMALIPWVLSTETGDINECNSFSQSRNRVLWSKLSCSASCCNGENHS 405 Query: 175 MYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIA 234 +++C + A++KAM+A++V+VNH LFL+D+ + L+P + ++FDEAH+LP+I+ Sbjct: 406 HHENCPALIAKRKAMNANMVLVNHSLFLSDLQLD----FALLPSYEHIVFDEAHRLPEIS 461 Query: 235 SQYFGQSLSSRQLLDLAKDITIA-----------YRTELKDTQQLQKCADRLAQSA---- 279 +Q FG+S+S ++AK + + + +L + D+L+++ Sbjct: 462 NQVFGRSISFFGFRNIAKTLEPSKAGGDGLIAEIASRIPAEKPELHEICDKLSEALGEAE 521 Query: 280 ---QDFRLQLGEPGYRGN------------LRELLANP-----QIQRAFLLLDDTLELCY 319 F +++G+ + L E A+P Q A + + Sbjct: 522 KALHRFFMKIGKKLAKQKNGRSGFTYTNSILAEYEADPATFLEQYNNARGFAEKLVAATA 581 Query: 320 DVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFT--LALTPLSV 377 ++ L G + LD+ + + + + + + + + ++ E T L PL Sbjct: 582 NMDGLK-GIVSDLDSRMTEISHFISDFEFVTKAGRNDWVFYMEEPFNPHTIKLHALPLHS 640 Query: 378 ADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQA----- 432 + ++E S FTSATLSV DL +F ++G++ P Y+ Q+ Sbjct: 641 GNVWREKFYPWIKSATFTSATLSVQADLTYFLQKMGMDNLRLGKQPFVRVYTEQSDVNER 700 Query: 433 -LLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP 491 + V + LP+ + P L L ++ +L TS A M Sbjct: 701 RSVMVAKFLPKPSAPEFGDALNDTLLKVLPNVEENTMVLFTSVATMMKAQAALAPAFAER 760 Query: 492 ---VLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 +L Q + S L+ F A L+ S WEGVD GD L L++I KLPF +P D Sbjct: 761 NKLLLCQHVDGSLDGLVAMFRKERGACLLGCQSLWEGVDFPGDALKLLVITKLPFPNPSD 820 Query: 548 PLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 PL+ + + + F + +P+A I L+QG+GRL+R D G ++I DNR+V+ YG Sbjct: 821 PLVAGLTNEMKAANKNFFKDYFIPEAYIELRQGMGRLLRSDSDSGKVLILDNRVVLERYG 880 Query: 608 ATF 610 TF Sbjct: 881 KTF 883 >UniRef50_B2SSY1 ATP-dependent helicase n=13 Tax=Xanthomonadaceae RepID=B2SSY1_XANOP Length = 710 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 190/677 (28%), Positives = 293/677 (43%), Gaps = 68/677 (10%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAI-EKGQPLVVEAGTGTGKTYAYLAP----ALRAKK 64 +L PGF R Q QM V++A+ G + EA TG GK+ YL AL KK Sbjct: 34 RLQANTPGFATRRAQSQMIGLVSRALATSGGIGIAEAPTGVGKSLGYLTAGVPIALATKK 93 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL------------ 112 K++ISTG+ ALQ QL RD+P KA +VAL KGR+ YLC Sbjct: 94 KLVISTGTVALQSQLVERDIPAFLKATGLEASVALAKGRTRYLCTRNAAELEGDTSQNAM 153 Query: 113 ---EQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCL 169 EQ PV L ++++ +T +GD+ +T+ C Sbjct: 154 FEDEQALYDRPLSPVDADLAKRLAKAYAARTWNGDLDDAPEQV-SVPLRMRITTPASGCA 212 Query: 170 GSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI---PEADVMIFDE 226 G C C V+KAR +A +VV NH L L+ + + ++ G+ + P +++ DE Sbjct: 213 GRRCSYAAQCPVLKARTDVREAQIVVTNHALLLSSLSLGDAENGQPLIAPPADMLLVLDE 272 Query: 227 AHQLPDIASQYFGQSLSSRQLLDLAKDITI----AYRTELKDT------QQLQKCADRLA 276 H + +A +L + + I AYR KD + + A R++ Sbjct: 273 GHHIAGVAIDQGAANLPLDDMARRTGRMQILIAAAYRAVDKDKLGNLLPNEAIEVAARVS 332 Query: 277 QSAQDF-----RLQLGEPGYRGNLRELLA---NPQIQRAFLLLDDTLELCY--------- 319 + + F R+ EPG R L PQ A L + + Sbjct: 333 RLLKAFHADVERVWKPEPGERDPLWRAANGKLPPQWGPAIEELGEETRALFNWVHAAHSA 392 Query: 320 -------DVAKLSLGRSA--LLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR-HFT 369 D A+ L RS L+ A ++ L+ + KE QP + W + Sbjct: 393 IAKGKQDDSAREGLQRSLGLALEMAEQQHNLWSGWRREDKE-GQPPMARWITLSRDGDLI 451 Query: 370 LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-AESLLLPSPFDY 428 +P+S A + ++ + S + TSATL+ D F G+ AE L SPFD Sbjct: 452 CHCSPVSAAQVLRTMIWNEVDSVVMTSATLTGGGDFQSFAIDNGLPDHAEMASLASPFDL 511 Query: 429 SRQALLCVLRNLPQTN-QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT 487 QA L V + + G +++A L ++ +L TS M +A+ Sbjct: 512 PNQAELIVPNFPVTPDDREGHPKEVANYLVRELDWTAKGSIVLFTSRWKMEKVADLMPLA 571 Query: 488 MTLPVLLQGETSKGQL----LQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFT 543 VL+QGE +K QL L++ + ++L +SF EG+D+ G+ + V+I ++PF Sbjct: 572 QRNRVLVQGEGNKSQLITEHLRRIAAGEGSVLFGLNSFGEGLDLPGEACTTVVITQVPFA 631 Query: 544 SPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 P DP E RG + F+ + +P A+ TL Q GRLIR + D G ++I D+RL+ Sbjct: 632 VPTDPQTSTLSEWLESRGHNAFNLIAIPHALRTLTQFSGRLIRSSSDHGRVIILDSRLLT 691 Query: 604 RPYGATFLASLPPAPRT 620 R YG + ++PP R Sbjct: 692 RRYGKRIIDAMPPFKRV 708 >UniRef50_A1VJJ6 Helicase c2 n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VJJ6_POLNA Length = 750 Score = 454 bits (1168), Expect = e-126, Method: Composition-based stats. Identities = 194/702 (27%), Positives = 289/702 (41%), Gaps = 94/702 (13%) Query: 9 GQLAKAIPGFKPREPQRQM----------AVAVTQAIEKGQPLV-VEAGTGTGKTYAYLA 57 G++A PGF R Q QM A A + G L +EAGTGTGKT AY Sbjct: 52 GEVAADWPGFIARPGQYQMMQACLLTFLSAKAPEDEVRTGSHLAQLEAGTGTGKTVAYCL 111 Query: 58 PALRA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE 113 A+ A KK VI+ST + ALQ+QL+ +DLP +++ + +LKGR+ Y+C RLE Sbjct: 112 AAIVASEVLKKTVIVSTATVALQEQLFQKDLPRLAEIIP-DLRYDILKGRARYVCESRLE 170 Query: 114 -------QQALAGGDLPVQILSDVILLR-----------SWSNQ--------TVDGDIST 147 Q L G+L D W T DGDI + Sbjct: 171 GVINDVAQDGLLTGELFQDSFGDARRQAAGIVRDRTQAMRWFKSSAKKLNSGTWDGDIDS 230 Query: 148 CVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVV 207 D Q W V + C G C +++C KAR++A A + V NH L LA + Sbjct: 231 LAQ-PPDPQDWRQVQANAHACNGGQCEHFRNCAFFKARRQAASATLQVANHALVLATLQT 289 Query: 208 KESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL---SSRQLLDLAKDITIAYRTELKD 264 S + +FDEAH LP IA++ F +S +LL + + + + L Sbjct: 290 DSSLIDAG---NTLFVFDEAHHLPGIAAEQFSYRARLGTSSKLLTSLRTVALRHGKALPA 346 Query: 265 T---------QQLQKCADRLA---QSAQDFRLQLGEPGY----RGNLRELLANPQIQRAF 308 + Q + C D+LA + QD +L + +G + E L + Q Sbjct: 347 STRPDPVAFAQLVTGCTDKLAMLERYWQDAQLVSADQPVHRFAQGRIPEALV-LECQELA 405 Query: 309 LLLDDTLELCYDVAKLSLGRSA---------------LLDAAFERATLYRTRLKRLKEIN 353 L+ + +A L R L + Sbjct: 406 TLIRAIASVVSSIAAALKEPDESKSPTQREEQTHAGVELGVYLSRLGTLDKLLSAWATHD 465 Query: 354 QPGYSYWYECTSR------HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHH 407 + ++ W E L +P++ A + + K + + TSATL+ Sbjct: 466 RVPWAKWIEWAEDGAGSAPDAWLCASPMTAAQVLSKNLWNKVSAAVCTSATLTACGSFDF 525 Query: 408 FTSRLG---IEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANN 464 F G + SL++ SPFDY+ Q L + PG + +L L ++ + Sbjct: 526 FDRLSGMNRFPERRSLVVDSPFDYATQGELRIAPMTHSPKSPGFSDELCDKLPGLLREHP 585 Query: 465 GRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQF----VSAGNALLVATSS 520 +L TS M+ + VL+QG S+ +LL++ + +++ S Sbjct: 586 HGQLVLFTSRRQMQACHAALPQDLLDQVLVQGVRSRTELLREHGRRVKAGERSIIFGLQS 645 Query: 521 FWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQG 580 F EG+D+ G V+IDKLPFT P P+ +A E +G DPF E+ +P A + L Q Sbjct: 646 FGEGIDLPGRLCEHVVIDKLPFTPPSSPVEEALAEWLSGQGRDPFAELSVPRAGMKLAQW 705 Query: 581 VGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD 622 GR +R DR V+ +CD RLV YG LA LP P R Sbjct: 706 AGRGVRTVTDRAVITVCDTRLVTMRYGQAILAGLPAFPLVRS 747 >UniRef50_Q1YS96 ATP-dependent helicase DinG n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS96_9GAMM Length = 668 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 176/672 (26%), Positives = 282/672 (41%), Gaps = 86/672 (12%) Query: 27 MAVAVTQAIEKGQP----LVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGSKALQDQ 78 M V A+ P VVEAGTGTGKT YL AL KK V+++TG+ ALQ+Q Sbjct: 1 MIATVANALSDNDPDKRLAVVEAGTGTGKTVGYLIAALPIARALKKTVVVATGTIALQEQ 60 Query: 79 LYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQ--QALAGGDLPVQILSDVILLR-- 134 L +DLP + +A + + AL+KGR Y C ++EQ A+ D + + D + Sbjct: 61 LIHKDLPELLEACGWDHSCALVKGRGRYACNLKMEQCLDAIKSKDAGLFLFEDEVAFNPN 120 Query: 135 ------------SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVV 182 + + T DGD + S +D + W +T C G C C Sbjct: 121 VQTEDLYREMSDALAEGTWDGDRDSWESRIQDVE-WRALTIDRRQCSGRRCRFVNQCAFF 179 Query: 183 KARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD--VMIFDEAHQLPDIASQYFGQ 240 AR + +++ +V NH L +AD+ + G G ++P + + IFDE H++ D A ++FG Sbjct: 180 NARNELEESECIVANHDLVMADLAL---GGGAILPPPEDCIYIFDEGHRIGDTAIRHFGA 236 Query: 241 SLSSRQ----LLDLAKDITIAYRTELKDTQ------QLQKCADRLAQSA----------- 279 L L K KDT +L+K A ++ + Sbjct: 237 ECRVNNSITWLERLQKQCKGQVPVFEKDTALAEQLPRLEKGATKIIELLNVAYPILQQAL 296 Query: 280 ------QDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSAL-- 331 +D R + LR++ + Q + L LE+ D +LG Sbjct: 297 ESADYPEDGRYRYANGDIGEGLRDIASQLAKQTSAWL--GRLEVLVDTLNDALGDKQYPI 354 Query: 332 --------------LDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR----HFTLALT 373 + E+ RL+R + + W ++ + Sbjct: 355 PAPDVELFYQQAGSWQSRAEQLLALWDRLQREIKTGDMPLACWLRLDDSGNNVDISVNAS 414 Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-AESLLLPSPFDYSRQA 432 P+ A+ ++++ + + TSATL GI A + + FDY + A Sbjct: 415 PIQAAELLRDVLWGSCYASVVTSATLRALGSFQTLQRETGIPDFAHFMTVAGAFDYQQAA 474 Query: 433 LLCVLRNLPQTNQ-PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP 491 ++ V + + NQ R + E + G +L +S M + + + + Sbjct: 475 VIRVPADAVEGNQTDAHTRYIIDHFAEYEEPHCG-TLVLFSSRRQMEQVYDDLSSELQKN 533 Query: 492 VLLQGETSKGQLLQQFVS----AGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 +L+QG+ S ++++ ++L+ +SF EGVD+ GD V+I KLPF PDD Sbjct: 534 ILIQGQLSNREMVRLHKERIDQGRTSVLMGLASFAEGVDLPGDYCRHVVIAKLPFAVPDD 593 Query: 548 PLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 PL +A E GG+ F ++ LP A + L Q GRL+R D G + I D RL+ + YG Sbjct: 594 PLHEALSEWIEAGGGNSFFDISLPIASLRLVQACGRLLRTEKDTGTVTILDKRLITKRYG 653 Query: 608 ATFLASLPPAPR 619 L LPP R Sbjct: 654 TQLLNGLPPFRR 665 >UniRef50_Q8L2A4 DNA helicase n=1 Tax=Proteus vulgaris RepID=Q8L2A4_PROVU Length = 688 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 174/671 (25%), Positives = 283/671 (42%), Gaps = 74/671 (11%) Query: 16 PGFKPREPQRQMAVAVTQAIEKGQP------------LVVEAGTGTGKTYAY---LAPAL 60 G R Q++M + + V+EAGTGTGKT Y L P Sbjct: 23 KGVTARMGQKRMMNLCYGLVNSIKVDDSGNRTSAPAVCVIEAGTGTGKTLGYSIPLIPLA 82 Query: 61 RAKKKVII-STGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG 119 +AK+K +I ST + ALQ+Q+ +DLP + + A+ KGR Y C R ++A Sbjct: 83 QAKEKTLILSTATVALQEQVVHKDLPDIRASAGLDFTFAMAKGRGRYFCKLRAAREAEKE 142 Query: 120 GDL-PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 +L Q + IL + + +GD T V + W + C CP +K Sbjct: 143 MELFGFQDETIKILTDEFDDDLWNGDRDTYP-VEITDKIWQKANAVAGQCPAHHCPHFKS 201 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD--VMIFDEAHQLPDIASQ 236 C KAR + DV++ NH + +AD+ + G G ++PE + +FDE H L A Sbjct: 202 CPFYKARDEMDSVDVIIANHDIVMADLSL---GGGVVLPEPKNCIYVFDEGHHLTSKAIS 258 Query: 237 YFGQSLS-------SRQLLDLAKDITIAYRTELKD-TQQLQKCADRLAQSA---QDFRLQ 285 +F + S S ++ D+ + +Y ++ L A L + ++F L+ Sbjct: 259 HFSSTCSLDAAIKWSDEIFDMVIPLVDSYDDNMERYATTLNSLASELKKELVLTKEFLLR 318 Query: 286 ----LGEPGYR---------------------GNLRELLANPQIQRAFLLLDDTLELCYD 320 GE R G + E L N + ++ D Sbjct: 319 NLPFKGEYDNRQTCIFPRGETPHEVIHYAKTVGKVLEELKNTNGKMTAIIEDKAKGPEGG 378 Query: 321 VAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPG--YSYWYECTS---RHFTLALTPL 375 K+ +G LD + + + ++ G ++ W + + +P+ Sbjct: 379 EHKMIVGE---LDNKLSTLVTAWAQFVNVNKRDKQGIPFARWVDVNRDKKNEIVINSSPV 435 Query: 376 SVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALL 434 + K ++ + + I TSAT+ + + G+ +LL SPFDY +L Sbjct: 436 HAGEMLKSIVWKDAHAAIITSATIRSLGKFDAYLDQAGLPADTPTLLAQSPFDYENNGVL 495 Query: 435 CVLRN-LPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVL 493 + + + ++ ++L ++ G C +L S M ++ E + +L Sbjct: 496 FIPKMKFSPKDSAAHTTEVGSLLPTLVLRKRG-CLVLFASKKQMTEVFEMMPDDIQDKIL 554 Query: 494 LQGETSKGQLLQQFV----SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPL 549 +QG K +++ + ++++ SSF EGVD+ GD + VII KLPF P DP+ Sbjct: 555 MQGSIPKSEIVSRHKLRIDRGDDSIIFGMSSFSEGVDLPGDYCNNVIIAKLPFMVPTDPV 614 Query: 550 LKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGAT 609 E G + F+E+ +PDA I L Q VGRLIR D G + I DNRLV + YGA Sbjct: 615 SLTLAEWMESVGRNTFEEISVPDACIKLIQSVGRLIRTEQDTGAVTILDNRLVTKRYGAG 674 Query: 610 FLASLPPAPRT 620 L SLPP R Sbjct: 675 ILDSLPPFKRV 685 >UniRef50_A4BE15 ATP-dependent helicase, DinG family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BE15_9GAMM Length = 704 Score = 450 bits (1158), Expect = e-125, Method: Composition-based stats. Identities = 171/684 (25%), Positives = 272/684 (39%), Gaps = 87/684 (12%) Query: 17 GFKPREPQRQMAVAVTQAI------------EKGQPLVVEAGTGTGKTYAYLAPAL---- 60 K R Q+ M V + + V+EAGTGTGKT Y A+ Sbjct: 22 DLKARHGQKHMLAQVARTFGTIELDEEGVRVSETPVGVIEAGTGTGKTIGYALSAIPIAQ 81 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 KK++I+T + ALQ+Q+ S+DLP + N L KGR YLC +LEQ Sbjct: 82 SLDKKLVIATATVALQEQVVSKDLPDILSNTDLQFNAVLAKGRGRYLCTHKLEQLIQFYS 141 Query: 121 DL--------------PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 + ++ S+ + GD +DS W +TS++ Sbjct: 142 GTVVAMSLFEETMEADEATLNQYNEMMTSFGSGEWSGDRDQWPDKLDDS-LWRTLTSSHR 200 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIP--EADVMIF 224 CL CP Y++C +ARK DADV++ NH L LAD+ + G G ++P E + +F Sbjct: 201 ECLNRRCPHYQNCPFFEARKALDDADVIIANHDLVLADLSL---GGGAILPAPEDTLYVF 257 Query: 225 DEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQ--------------QLQK 270 DE H LPD A +F ++ + LL+ + + QL Sbjct: 258 DEGHHLPDKALMHFANQMTVKYLLNQFDNWKKQLPKLRLELAYGDSSEFLIDQFSDQLNA 317 Query: 271 CADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELC------------ 318 ++L+ + + + L Q+ +L+ L Sbjct: 318 AHEQLSFAWSALQPWFHRLEETNDQLTLHQPEQLVPVSSILEPLLSPMTGVYTSLTAIEE 377 Query: 319 -----------YDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYS---YWYECT 364 D + L+ R + + + + P Y+ W E Sbjct: 378 SIRKRLSNTTDLDEKERLQNAMPLIGRWLSRTEPAKDLVSSWLQTDSPDYAPTARWMERI 437 Query: 365 S----RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL 420 + + +L +P++ K + + I TSATL+V F ++ GI A L Sbjct: 438 NTPDVQDLSLNTSPVTANAVLKAYLWNRCCGAIVTSATLTVEARFDRFLAQAGISDAAHL 497 Query: 421 -LLPSPFDYSRQALLCVLRNLPQTN-QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 +PSPFDY V + + + + ++ + G +L +S A M Sbjct: 498 LQVPSPFDYPNLVTAIVPEFAVEGGAREAHSESIVRLIESQLPKETGN-LILFSSRAQMY 556 Query: 479 DLAEQFRATMTLPVLLQGETSKGQLL----QQFVSAGNALLVATSSFWEGVDVRGDTLSL 534 ++ E + LQ + K L+ ++ + L +S EGVD+ G+ L+ Sbjct: 557 EVYEALPVDWQDVITLQDDLPKTALIAHHRERLEEGAGSTLFGLASLAEGVDLPGNYLTH 616 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 ++I KLPF PDDP+ + +PF V LP A I + Q GRLIR +DRG + Sbjct: 617 LVIAKLPFGVPDDPISSTLSLWLESKQLNPFQVVTLPAATIRMVQACGRLIRHENDRGTI 676 Query: 595 VICDNRLVMRPYGATFLASLPPAP 618 + D RLV + YG T + SLP Sbjct: 677 WVMDRRLVTKRYGKTIINSLPNYR 700 >UniRef50_C0N9A8 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N9A8_9GAMM Length = 692 Score = 450 bits (1158), Expect = e-125, Method: Composition-based stats. Identities = 174/685 (25%), Positives = 282/685 (41%), Gaps = 79/685 (11%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKG---QPLVVEAGTGTGKTYAYLA----PALRA 62 ++ + + FKPR Q+QM+ + +++K + VVEA TG GKT AYL+ A+ Sbjct: 8 RIGQVVADFKPRPQQQQMSEFIAASMQKKAQQRVAVVEAPTGVGKTLAYLSGTIEAAINN 67 Query: 63 KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD- 121 KK ++IST + LQ QL +DLP S AL++ +KGR Y+C +L Q A A Sbjct: 68 KKVLVISTATVNLQQQLIQKDLPLFSSALEHPIRFVQVKGRRRYVCPSKLSQLATAPEQQ 127 Query: 122 -----------LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG 170 + + LL W + DGD + E ++ W +++ ++ C G Sbjct: 128 ELGIDIDDKYKRVLHMAHAKQLLSEWDQERWDGDRDSRSDKLE-AELWQQISTDSEGCAG 186 Query: 171 SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQL 230 C Y C K R++ + A V+V NH L L+D + G PE + +FDEAH L Sbjct: 187 KSCSFYLRCPYYKLRREMLSAQVIVANHDLILSDADLG-GGLVLPNPEEALFVFDEAHNL 245 Query: 231 PDIASQYFGQSLSSRQLLD------------------LAKDITIAYRTELKDTQQLQKCA 272 P A + ++L+ QL D +D + Sbjct: 246 PRKALDHAAKALNFVQLYQTTETADSVLKKIPSALAFRQHDFGYMLSELRRDLPAVISHL 305 Query: 273 DRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLL-LDDTLELCYDVAKLSLGRSAL 331 +L Q L R + + N + A L+ + L+ ++ K + Sbjct: 306 QQLEMILQSDGLVQDVLEKRISEPRIFWNSPLVNALLIPCQNLLQRANNIYKHYSVLAKW 365 Query: 332 LDAAFERATL------------------------YRTRLKRLKEINQPGYSYWYECTS-- 365 + E+ L + + ++P W Sbjct: 366 IKEGLEKTQLSNKVGEALLPQVGTVQNIFGYLIDFMGLFLEPDQEDRPPNVRWLSQEQFA 425 Query: 366 --RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE---QAESL 420 + + P++ A + + S + TSATL H F G+ + L Sbjct: 426 KQQTLVIHAGPMTAAYFLDRSLWTRAYSVVLTSATLRGMGLFHRFRMDCGLHRFSEQHFL 485 Query: 421 LLPSPFDYSRQALLCVLRN--LPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 +PSPF+YS QA L + LP Q +++ L II+ + +L TS +M Sbjct: 486 AVPSPFNYSDQATLNLPHMQFLPNEQQQQWRQEVVKQLASIIDVDEA-TLVLFTSREVME 544 Query: 479 DLAEQFRATMTLPVLLQGET-SKGQLLQQF----VSAGNALLVATSSFWEGVDVRGDTLS 533 + Q +T +L+QG+T S ++Q+ + +++ F EG+D+ G+ + Sbjct: 545 AVYRQLPQRLTTKILIQGDTLSPKNMVQRHIRQIEAGKGSIIFGMDRFAEGIDLPGNLCT 604 Query: 534 LVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGV 593 VII KLPF P+ +A+ E +GG PF + LP + L Q GRL+R D G Sbjct: 605 HVIITKLPFPVFTRPIEQAKQEWIIRKGGQPFTALSLPAVSVKLIQACGRLLRKETDTGR 664 Query: 594 LVICDNRLVMRPYGATFLASLPPAP 618 + I D RL+ + YG L LP Sbjct: 665 ITILDRRLLSKGYGKQLLQHLPDYR 689 >UniRef50_D1Y8P3 DNA polymerase III, epsilon subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y8P3_9BACT Length = 646 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 177/648 (27%), Positives = 284/648 (43%), Gaps = 43/648 (6%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVV-EAGTGTGKTYAYLAPA 59 M D F P+G L +P F+ R QR++A + ++ + L+ EA TG GKTYA L PA Sbjct: 1 MEDFFGPEGILNARLPNFEYRRQQRELAEKIENFLQSDRRLLAAEAPTGVGKTYAMLIPA 60 Query: 60 LR----AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQ 115 +R V++ T LQ+QL +D+P + L LLKGR NY C+ + + Sbjct: 61 MRWAVANNSTVLVLTSGITLQEQLIYKDIPALLDVLGLDLPYGLLKGRGNYACIRKAREI 120 Query: 116 ALAGG-DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCP 174 G D + W T GD+S S+ + A + S+ CLG CP Sbjct: 121 GAEGFLDFGGDKGQASRDISGWLYATETGDLSEL-SLGDTHPARERIASSYLTCLGPYCP 179 Query: 175 MYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIA 234 ++ CF K + V+V N+H++ + ++ + F ++I DEAH++ D A Sbjct: 180 HHERCFYNKVMRSLSHWRVIVANYHVYFSYVLGQRKPFPA---PFGLLICDEAHKMEDAA 236 Query: 235 SQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDF------------ 282 + R L + + E + + ADR A+ D Sbjct: 237 RAVTQVGVDVRDWQRLLRRAPRLDKVEASLLRSVDCPADRFAEEVADLSRVSESVFDQLA 296 Query: 283 -RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATL 341 RL G+ ++ + L+ + A GR A R + Sbjct: 297 ARLPDGKNFTAYPPELKNDTAELLVKCDRIIGHLDELQEAAA-GGGRDANALQDDGRIAV 355 Query: 342 YRTRLKRLKE--------INQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWI 393 + L ++ N P ++YW E S L + ++ +D I Sbjct: 356 WNGELTAFRDSLRWCCDTQNYPEWAYWREGGS----LKSSCVNGSDLIPPAFDDDEIKVI 411 Query: 394 FTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLA 453 SAT++V+ ++ + G+ E+ +L SPFD + V+ Q PG A +A Sbjct: 412 ALSATMTVDRSFEYWANETGLAPDETAVLDSPFDLPSLMEIDVVDLGLQVMSPGYADAVA 471 Query: 454 AMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQGETSKGQLLQQFVSA 510 + R N G +L +S ++ ++ + L +L+QG+ + +LL+ F Sbjct: 472 RVCRKYARENGGATLILLSSRRLLTAVSAYLKMNAEKDRLNILVQGDLPRTELLELFKEN 531 Query: 511 GNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQL 570 ++LV +SF EG+DV G+ L+ VIID++PF P DP+ +AR +L G + F + L Sbjct: 532 ERSVLVGMASFREGIDVPGEALTQVIIDRIPFPHPGDPVGEARA---KLEGRENFVKAVL 588 Query: 571 PDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 P A + L+Q GRL+R DRG +VI D R+V RP L SLP P Sbjct: 589 PGAKMQLRQAAGRLVRTGSDRGRVVILDGRIVTRPDWK-ILDSLPAVP 635 >UniRef50_Q0A9Y9 Helicase c2 n=2 Tax=Gammaproteobacteria RepID=Q0A9Y9_ALHEH Length = 708 Score = 447 bits (1149), Expect = e-124, Method: Composition-based stats. Identities = 174/684 (25%), Positives = 272/684 (39%), Gaps = 78/684 (11%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAI----EKGQPLVVEAGTGTGKTYAYLAP----ALR 61 Q+ + +PGF+ R QRQM V + + E + L +E TGTGK+ AYL A Sbjct: 16 QVGQNVPGFRSRSQQRQMIAEVARTLAGECEGRRLLAIEGPTGTGKSLAYLLAGIPVARA 75 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 +++IIST + ALQ+Q+ RDLP + T + L+KGR Y+C LEQ Sbjct: 76 EGRQLIISTATVALQEQIVDRDLPALQANSGLTFSYGLIKGRRRYVCTRNLEQLVGGAAQ 135 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQA--WPL---------------VTST 164 + + W + G++ ++ D QA W +T+ Sbjct: 136 GEMDLGGPSAGPAHWPRKPQTGELEHLQALYRDLQAGDWDGDLDRRPPPAADLQGPMTTD 195 Query: 165 NDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD--VM 222 C G CP DC +AR+ + DV+V NH L LAD+ + G G ++P + Sbjct: 196 RHGCTGRGCPHVSDCPFHRARRGMEEQDVLVANHDLVLADLAM---GGGVILPPPEQVFY 252 Query: 223 IFDEAHQLPDIASQYFGQSL----SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQS 278 +FDEAH L A+ F S + L L + A ++ + + +R Sbjct: 253 VFDEAHHLAARATDAFRAESPLLASVQWLERLPRLAGQAISLLPEEAGRHLEALERAVNE 312 Query: 279 AQDFRLQLG-------EPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAK-------- 323 ++ + R + A L+ + +V K Sbjct: 313 LSAMLNEMHGMIRRDWQRMNRDGVWRFPAGELPAPLGELVPGLRDASAEVEKHYGRIGQA 372 Query: 324 --------------LSLGRSALLDAAFERATLYRT---RLKRLKEINQPGYSYWYE---C 363 ++ + L A R + R + P + W Sbjct: 373 FAKVTAEEGVTPGSVAERLAPELGEAASRVEHLADTWRLVAREQPSEAPPVARWITALGS 432 Query: 364 TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA---ESL 420 + +A +P+S A + + + + TSATL+ G+E+ L Sbjct: 433 GRPDYLVAASPVSAAAMLRNGLWSRAAGAVLTSATLTALGRFDRMRLACGLEEDDGTRYL 492 Query: 421 LLPSPFDYSRQALLCVLRNLPQTNQPG-SARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 L SPFDY +A+L V R P +L +L I+E G +L S + Sbjct: 493 SLASPFDYRNRAVLHVPRMASDPRDPEAHTGELIRVLPGILEP-EGGALVLFASARQLDA 551 Query: 480 LAEQFRATMTLPVLLQGETSKGQLLQQF----VSAGNALLVATSSFWEGVDVRGDTLSLV 535 + E A +L Q E + +LL + +++ + F EGVD+ GD V Sbjct: 552 VYEGLPAEWQGRILRQRERPRVELLAAHARAVEAGEPSVIFGLAGFAEGVDLPGDLCRHV 611 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 +I KLPF PD P+ E RG +PF ++ +PDA + L Q GRL+R D G + Sbjct: 612 VIAKLPFAVPDSPVEATLAEWLESRGRNPFMDITVPDAGMKLVQACGRLLRSEADSGRVT 671 Query: 596 ICDNRLVMRPYGATFLASLPPAPR 619 + D RL+ YG L LPP R Sbjct: 672 VLDRRLLTHRYGQALLNGLPPFGR 695 >UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=2 Tax=Bacillaceae RepID=A3I8T8_9BACI Length = 914 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 180/666 (27%), Positives = 299/666 (44%), Gaps = 69/666 (10%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK----KK 65 + KA+P F+ R Q +M + QA+ + + V+EA TG GKT YL PA+ KK Sbjct: 239 LMTKALPNFEERPAQFKMMDTIWQALHEQKECVIEASTGIGKTAGYLLPAIVYARTVHKK 298 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ 125 + IST + LQ+QL +LP + K L N+ +LKG +Y+ L+R EQ + Sbjct: 299 IAISTYTSYLQEQLVEEELPKIEKILGTKVNICVLKGMQHYIDLDRFEQSMAYADESYDD 358 Query: 126 ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKAR 185 S ++ + W +T G +S + + +D P F +A Sbjct: 359 TFS-ILQILVWLTKTETGVLSELNVSGGGQLFLEKI-----RKIPNDKPSKGFDFYEQAL 412 Query: 186 KKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSR 245 K + AD +V NH + L+D+V + F ++ D + DEAHQ A Q S Sbjct: 413 KNSAFADCIVTNHAMVLSDLVRQTPIFTQI----DGWVIDEAHQFIQAAMQQDEIVFSYT 468 Query: 246 QLLDL----------------AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEP 289 Q + + R ++ Q+L RL ++ + + + Sbjct: 469 QWKYIFGQIGTMEDTGLYQLFCEAAKKKQRVSMQSLQRLDAHFIRLQRAFDETIQRAAQS 528 Query: 290 ------GYRGNLR-------ELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAF 336 G R + + LA + L L+L + A+ LD Sbjct: 529 MQQQMKGKRASSKCTLFIEDVTLAKESFLQVSKLTQQWLDLATEAAQGFENNIEQLDKND 588 Query: 337 E--------RATLYRTRLKRLKEI---NQPGYSYWYECTSRHF--TLAL--TPLSVADKF 381 + ++ ++I + G S W E R +L + P +V Sbjct: 589 RYILSEWHYWIREVKIKIAEWEDIFLSSHDGSSVWLEFDVRSVPGSLHVFKKPANVTPII 648 Query: 382 KELMA--QKPGSWIFTSATLSVNDDLHHFTSRLGIEQA-ESLLLPSPFDYSRQALLCVLR 438 ++++A +K S ++TS TL V + T +LGI + E + L +P Y A ++ Sbjct: 649 EQVLAPLRKQASIVWTSGTLMVPGNERFVTRQLGISDSVEVIKLQAPPAYYAGAKAFIVT 708 Query: 439 NLPQ---TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPV 492 ++P +Q +A + + GRCF+L T+ M+R E + + + Sbjct: 709 DMPDIQHVSQEEYIEAVAHAITRTVRMTEGRCFVLFTAQDMLRKTVELIQDSELLDDYML 768 Query: 493 LLQGET--SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL 550 QG T S+ ++L+ F +A+L T+SFWEGVDV GD L+ VI+ +LPF+SP++P+ Sbjct: 769 FAQGVTGGSRMRILKSFQKFSHAVLFGTNSFWEGVDVPGDALASVIVVRLPFSSPEEPVF 828 Query: 551 KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATF 610 KAR + +G + F E+ LP+A++ KQG GRLIR + D+G ++ D R+ + YG F Sbjct: 829 KARAKHLTAQGRNSFTELSLPEAIMRFKQGFGRLIRSSQDKGAFIVLDRRITSKSYGKEF 888 Query: 611 LASLPP 616 + +LPP Sbjct: 889 IKALPP 894 >UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECT2_9ACTN Length = 964 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 189/699 (27%), Positives = 297/699 (42%), Gaps = 72/699 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + D+AP G + + P ++PR+ Q MA+ V A+ G V+EAGTG GK+ AYL P Sbjct: 270 IEADYAPGGLVNRMYPTYEPRDEQIAMALEVRDALVTGTHRVIEAGTGVGKSMAYLVPFA 329 Query: 61 RAKKK----VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 A ++ V I+T S L DQL +LP +++ L + LKG +Y CL +LE+ + Sbjct: 330 EAARRNNITVGIATKSNNLADQLMYHELPKLAEQLDGGLSFCALKGYDHYPCLRKLERMS 389 Query: 117 LAG-----GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGS 171 P L+ V ++ ++ Q+ DGD+ + + S P T+ + C Sbjct: 390 RGQVEITTKRDPADTLTAVAVIMAYVCQSADGDLDSL-GIRWRSVNRPDFTTASRECARR 448 Query: 172 DCPMY-KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQL 230 CP + C V AR++A ADVVV NH L ++ + G ++P + DEAH + Sbjct: 449 LCPFFPDKCLVHGARRRAAHADVVVTNHSLLFRNVAAE----GRILPPIRHWVIDEAHSI 504 Query: 231 PDIASQYFGQSLSSRQLLDLAKDITIAYRTELKD-----------------TQQLQKCAD 273 A + + + +S+ + L + + + L T + Sbjct: 505 EREARRQWARVVSADESRVLFERLGGSSTGALSQVSRDLATSEGSTLYLGLTAKATSTVA 564 Query: 274 RLAQSAQDFRLQLGEPGYRGN-------------LRELLANPQIQRAFLLLDDTLE---- 316 R + + D + E G R LRE + D LE Sbjct: 565 RASMAIADVFDGVRELGRRARGGYDNANLWIGPELRESDDWHDFLPSAYAAIDVLEQADK 624 Query: 317 ----LCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR----HF 368 L VA L R LK + + Y Y + R Sbjct: 625 SVDALVQAVAADKPEVVVDLGDISRRLHELAENLKLIIDGTDEHYVYSLQVNRRLRAGGE 684 Query: 369 TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-----AESLLLP 423 ++ + + + + + IF SAT++V+ HF +G+++ + SL L Sbjct: 685 SMTAERIDIGEALATEWLPEVHTAIFASATMTVSKSFEHFNHAVGLDRIGASTSSSLHLD 744 Query: 424 SPFDYSRQALLCVLRNLPQTN-QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 S +D+ + V ++P + L +L A G L T+ M DL Sbjct: 745 SSYDFDSNMAVVVAGDIPDPRDRESYLTALERVLFDAHLAMGGSVLTLFTNRRDMEDLYA 804 Query: 483 QFRATMTLPVLL----QGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIID 538 + M L Q +S +L +F++ + L A +FWEG D G+TL VII Sbjct: 805 RVEPKMARAGLELNCQQRNSSPRRLRDRFINEPTSSLFALKAFWEGFDASGETLRCVIIP 864 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 KLPF+SP DPL R LR + LP+AV+ +KQ GRLIR + D GVL++ D Sbjct: 865 KLPFSSPTDPLSCER----NLREDRAWARYSLPEAVLEVKQAAGRLIRSSTDCGVLILAD 920 Query: 599 NRLVMRPYGATFLASLPPAPRTR-DIARAVRFLAIPSSR 636 RLV + YG FL SLP + R + A+ +L + +R Sbjct: 921 PRLVTKGYGKKFLTSLPTSSYQRIESAQIGHYLQLWRAR 959 >UniRef50_C5CG21 Helicase c2 n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CG21_KOSOT Length = 835 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 170/679 (25%), Positives = 309/679 (45%), Gaps = 63/679 (9%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----L 60 F+ G L + G++ R+ Q A+ + ++IE Q +++EAGTGTGK+ AYL P+ + Sbjct: 144 FSEGGLLEDILEGYEYRQEQFMTALEIAESIEGKQGIMIEAGTGTGKSLAYLIPSAYYSI 203 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYT-GNVALLKGRSNYLCLER-LEQQALA 118 +++++ST ++ LQDQL +D+ V K V LKGR Y CL++ E+ A Sbjct: 204 SKGEQIVVSTRTRMLQDQLARKDVAIVKKLPNLEELRVWTLKGRERYFCLKKYFEELEYA 263 Query: 119 GGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 G + +++ + WS +T GD+ E+ T+T CL CP + Sbjct: 264 VGSGKSKNRTELFGVLLWSIKTGSGDLDELHLKEENR---NRFTATRFECLRKLCPFFNR 320 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVK--------ESGFGELIPEADVMIFDEAHQL 230 C +R A +AD+V+ NH L ++ ++ + G L+P+ V+I DEAH+L Sbjct: 321 CPYYNSRDNAQNADIVITNHSLLFSEAHIRLEDSREGEDEPIGMLLPKFKVLIVDEAHEL 380 Query: 231 PDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQ------LQKCADRLAQSAQDFRL 284 ++ +L + + + + L+ + L++ RL + + Sbjct: 381 EMSLTEAMSFNLVPHEAVSTIRKAINCSKDALRSIRNHFERSFLEELWGRLRKFTAEIEK 440 Query: 285 QLG-----------EPGYRGNLRELLANPQ--------IQRAFLLLDDTLELCYDVAKLS 325 L + + + EL A + IQR +L L + +VA+ Sbjct: 441 ILKTIVVSYNNCSTDEKHSIDNEELEALKKDIGELYTIIQRFRAVLIQLLRMVEEVAEEE 500 Query: 326 LGR-SALLDAAFERAT-LYRTRLKRLKEIN--QPGYSYWYEC----TSRHFTLALTPLSV 377 L+ + T +++L ++ + G + H + P+ Sbjct: 501 ETPVLEKLNMELKSVTSELDGLIRQLLGLSREEDGRVVYVRRTVTNNGNHLIITSAPIK- 559 Query: 378 ADKFKELMAQKPGSWIFTSATLSV----NDDLHHFTSRLGIEQA-ESLLLPSPFDYSRQA 432 D+ + +F SATL V +D ++ LG+ ++ ++ L S FD+ Q Sbjct: 560 NDQLMAAIFPDVPVKVFISATLWVYSGRSDGFNYARRILGLNESFHAIKLGSSFDFQEQL 619 Query: 433 LLCVLRNL--PQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM-T 489 +++++ Q N Q A ++ +++ G +L TS+ M + + + Sbjct: 620 KFYIVKDMAKYQPNNREYLNQGANLISEMLKIVKGSAMVLFTSYKDMYYVISKISEELLD 679 Query: 490 LPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDP 548 + + +Q S ++ + V++ N+++ SFWEG+D+ G+ L L+II KLPF PDDP Sbjct: 680 IRLQIQEPNNSPTAIVNEHVNSENSVIFGVRSFWEGIDLPGEHLKLLIIFKLPFERPDDP 739 Query: 549 LLKARMEDCRLRGG-DPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV--MRP 605 L+ AR++ + + ++ P + +QG+GRLIR +DRGVLV+ DNR+V + Sbjct: 740 LINARIKHYGTKNYVEGLNKYYYPKMITAFRQGIGRLIRTRNDRGVLVVLDNRIVDGNKI 799 Query: 606 YGATFLASLPPAPRTRDIA 624 Y L SL P + I Sbjct: 800 YSRKLLRSLSPDVKINVID 818 >UniRef50_A5CX48 ATP-dependent DNA helicase DinG n=3 Tax=Gammaproteobacteria RepID=A5CX48_VESOH Length = 686 Score = 441 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 171/674 (25%), Positives = 289/674 (42%), Gaps = 70/674 (10%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAI-----EKGQPLVVEAGTGTGKTYAYLAPAL----R 61 L + + GF R+ Q +M +++ + L VEA TG GKT+AYL ++ Sbjct: 17 LKENMNGFITRQAQNKMIAEISKTLSGEYKNSHNILCVEAPTGIGKTFAYLLGSIHIAKA 76 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG- 120 KKK+IIS+ + ALQ+QL+ +D+P + L+KGRS Y+C+ L Sbjct: 77 NKKKLIISSANVALQEQLFFKDIPQAQQYCCVDFEYTLIKGRSRYVCIRNLINICEDNKN 136 Query: 121 ----------------DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTST 164 + P++ LS +L ++S + +G+I + + W + Sbjct: 137 DNPLFESMPLFDKPPEEYPLEQLSK--MLYNYSTKKWNGEIDDLIPTT-NHSIWQQIACN 193 Query: 165 NDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIF 224 C +C YKDC K R+K ADV+V NH L LAD+ + ++ + IF Sbjct: 194 RFTCTVKNCEFYKDCAFFKTRQKITKADVIVANHDLVLADLSTGNTVLPDV--SKSIFIF 251 Query: 225 DEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQ------LQKCADRLAQS 278 DEAH L A +F + S+ + K T K ++Q +++ + + Sbjct: 252 DEAHHLNSKALSHFSLTTSTEFIKTSVKQTKEVSETLCKISKQNIPNINIKQIDNYITDL 311 Query: 279 AQDF-RLQLGEPGYRGNLRELLAN-PQIQRAFLLLDDTL--------ELCYDVAKLSLGR 328 Q +L+ E Y N + QI R L L + + E D K ++ Sbjct: 312 IQLLEQLKFNENIYLFNQGVIDEPIKQISRNILTLIEIIQTKFTLLKEFWSDYLKKTVIN 371 Query: 329 SALLDAAFERATLYRTRLK----------RLKEINQPGYSYWYECT------SRHFTLAL 372 ++ A L ++ E N+ S W + + ++ L Sbjct: 372 KSIHGPINNMAGQCEQHLLSIIALFSSFLQIDEPNKIPNSRWIKKSILTTSKRTNYLLNS 431 Query: 373 TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI--EQAESLLLPSPFDYSR 430 +++ L+ K I TSATL+ +LG+ + + L LPSPF +++ Sbjct: 432 AQTDISENLDHLIWSKASGAILTSATLTSLGSFERLNKQLGLLRNENQYLRLPSPFMFNQ 491 Query: 431 QALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTL 490 L+ T ++ L ++++ G +L TS+ M+ +A + Sbjct: 492 VDLIIAKLKASPTQVYEHTQETTLQLLKRLDSDEG-SLVLFTSNKQMQIVANLIDKKLNC 550 Query: 491 PVLLQGETSKGQLLQQF----VSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPD 546 + +QGE K +L++ +++ SF EG+D++G+ L+ VII KL F+ P Sbjct: 551 TLFIQGEYPKKNILKKHINLRKQGKGSIIFGLDSFSEGIDLKGNNLTHVIITKLRFSVPT 610 Query: 547 DPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPY 606 P+ + + + +PF E+ LPDA + L Q GRLIR D G + I DNRL+ + Y Sbjct: 611 SPIDRTLATYLKSQNRNPFMEISLPDASLKLIQACGRLIRTETDVGKITIFDNRLISKFY 670 Query: 607 GATFLASLPPAPRT 620 G L +LP Sbjct: 671 GKLLLNALPNYNII 684 >UniRef50_C1SGW8 DNA helicase, Rad3 n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGW8_9BACT Length = 591 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 179/641 (27%), Positives = 278/641 (43%), Gaps = 58/641 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 M F+ G L+ +P ++ R+ Q A + +++ QP VVEA TG+GKT+AYL PA Sbjct: 1 MDKYFSKVGSLSDILPRYRQRDAQLDAANFIFDSMKTYQPAVVEAPTGSGKTFAYLIPAF 60 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 ++ IIST +K L Q+ +D+ V++ VA+LKGR NY C R + Sbjct: 61 ELGRRTIISTKTKQLMSQIAGKDIEAVNRIFGDDRFVAVLKGRRNYFCHLRFFRFVYPNQ 120 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + W VD +I +++ + C S C Y C Sbjct: 121 GR-------FERVVEWYGSVVDQEIIDVPIGVFSPHEIEHISTDSWQCTASKCEFYDICS 173 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVK-ESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 +A+++A AD+V+ NH+L ++D +K E+ + AD +I DEAH +PDI ++ G Sbjct: 174 FYRAKEQANSADIVITNHYLLMSDFALKSENEHASIFDFADHIIMDEAHSIPDIFPRFAG 233 Query: 240 QSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELL 299 LS R L L + A+ D ++++ A L+ + + + +RG L + Sbjct: 234 TELSLRSFLKLMNENRQAF-----DPREIELAAGMLSGLLETIKTRTYTNDFRGALLPYI 288 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRL--KRLKEINQPGY 357 A+ + FE RL K + + Sbjct: 289 -------------------------EFVNKAIGEKDFEEMKNVHKRLVEKAVSVLGDSEG 323 Query: 358 SYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA 417 + E L PL+ ADK +E M S +F SATLS + +F S G E+ Sbjct: 324 VRFVEQERGDILLQYIPLNAADKLREGMKNACLSPVFVSATLSGKGNFSYFLSETGYEEE 383 Query: 418 E--SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 E + L FD ++Q L V Q +LA G ++C S Sbjct: 384 EIGKMSLEPVFDMAQQGRLLV-----QDCDEAFYEELA-------LKAKGSVLIICNSVG 431 Query: 476 MMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 M L + + V Q + ++ + + V + F EG+D +S V Sbjct: 432 RMLKLTKMLKELCPGRVYSQRDID----IKDTEGLKDTIFVGCAVFREGMDFAHTGISYV 487 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 ++DKLPF PDD +LK + E R +G +PF + LP AVI +Q VGRL+R DD+GV V Sbjct: 488 VLDKLPFEYPDDLVLKEQAESVRKKGQEPFMDYFLPRAVIYYRQAVGRLLRHEDDKGVWV 547 Query: 596 ICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR 636 + D R+ + YG F L PR + AV FL + + Sbjct: 548 VLDRRIDTKNYGKYFATVLKDVPRINTLDEAVAFLEVEDAE 588 >UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N494_SLAHD Length = 986 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 187/699 (26%), Positives = 289/699 (41%), Gaps = 88/699 (12%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA- 59 + F+ DG + ++PR Q+ MA V A LVVEAGTG GK+ AYL PA Sbjct: 278 IDQAFSVDGLIGSMYENYEPRIEQKIMAEEVLSAFSTSNNLVVEAGTGVGKSMAYLVPAA 337 Query: 60 ---LRAKKKVIISTGSKALQDQLYSRDLPTVSKALK----YTGNVALLKGRSNYLCLERL 112 LR + I+T + AL DQL ++LP ++KAL+ LKG S+Y CL R+ Sbjct: 338 VTALRNNIPIGIATKTNALLDQLVYKELPMLAKALEAEGAGELKHVALKGFSHYPCLRRI 397 Query: 113 EQQALAGGDL------PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 G + + + + S+ QT DI + +T+++ Sbjct: 398 SHVVSDGAHMVEIAGQQYSQATSIAAILSYIEQTEYDDIDALKLDYRTLPRYA-ITTSSR 456 Query: 167 NCLGSDCPMYK-DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFD 225 CL CP + CFV AR++A A VVV NH LF D+ G L+P A I D Sbjct: 457 ECLRKRCPFFGTYCFVHGARRQAEHAHVVVTNHALFFRDLAAD----GNLLPHAKFWIVD 512 Query: 226 EAHQLPDIASQYFGQSLSSRQLLDLA-----------------KDITIAYRTELKDTQQL 268 EAH A + +L ++++L LA + + T+ + + Sbjct: 513 EAHGAEAEARKALAINLDAQEMLRLAGRLTTEDAKRNAFVRLERRKPVDSGTQPEASTLF 572 Query: 269 QKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF----LLLDDTLELCYDVAKL 324 ++ + +DF + R +A + + + + ++D + L + L Sbjct: 573 YSLTEKAKKRGRDFGEKAEILAKRMKDLVKVAPKENNKNYDTFEVWINDDIRLTPEFKGL 632 Query: 325 SLGRSALLDAAFERATLYRTRLKRLKEIN------------------------------Q 354 +DAA + + + L +++ Sbjct: 633 QGYGRDFVDAAEKLISSGNEIIAFLDDMDGVAENQREIASIVIDAKNMLQACETILGPAD 692 Query: 355 PGYSYWYECTSR----HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTS 410 Y Y + +L + + + E + ++ S ++ SAT+S++DD F Sbjct: 693 LRYVYSARVCRKPERVAESLEAQIVDIGQELDETLYERTQSVVYASATISISDDFQAFNQ 752 Query: 411 RLGIEQAESLL-----LPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNG 465 LG+ +E+ L S +DY+ + VL ++P+ N +L ML A G Sbjct: 753 ALGLNASEASRSKECLLGSSYDYNHHMRVFVLNDMPEPNNARYMARLQDMLLRAHLAQQG 812 Query: 466 RCFMLCTSHAMMRDLAEQFRATM---TLPVLLQ-GETSKGQLLQQFVSAGNALLVATSSF 521 L T+ M + + L ++ Q S L F++ + L A SF Sbjct: 813 SMLTLFTNRREMEQCFDAVNPELKANDLRLVCQKWGVSVKGLRDDFLADKHLSLFALKSF 872 Query: 522 WEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGV 581 WEG D G TL VII KLPF P DPL R R + LP AVI +KQ Sbjct: 873 WEGFDAPGATLRGVIIPKLPFAKPSDPLSCER----SARDRSAWAHYVLPKAVIEVKQAA 928 Query: 582 GRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 GRLIR A D GVL++ D RL+ + YG +FL SLP T Sbjct: 929 GRLIRTATDEGVLILADRRLLTKGYGKSFLNSLPSTNIT 967 >UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WPW0_EGGLE Length = 966 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 195/712 (27%), Positives = 298/712 (41%), Gaps = 94/712 (13%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + F+ G + F+PR Q MA AV +A + L+VEAGTG GK+ AYL PA Sbjct: 260 IVQAFSETGLVGSLYEEFEPRIEQVAMAEAVRKAFSSSENLLVEAGTGVGKSMAYLVPAA 319 Query: 61 RAKKK----VIISTGSKALQDQLYSRDLPTVSKALKY------TGNVALLKGRSNYLCLE 110 + V ++T + L DQL +LP + KAL+ + A LKG S+Y CL Sbjct: 320 LTARANNIAVGVATKTNTLLDQLVYHELPALEKALRLADPDRPSLTYAPLKGFSHYPCLR 379 Query: 111 RLEQQALAG------GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL--VT 162 ++ G G+ + L S+ QT D+ + D + P +T Sbjct: 380 KIGHIVEEGAQTKLFGNKEQTQAPSLAALLSFIEQTEYDDMDSL---KIDYRVLPRRLIT 436 Query: 163 STNDNCLGSDCPMYK-DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADV 221 +T ++CL CP + CFV +R++A AD+VV NH L D+V G L+P Sbjct: 437 TTANDCLRRKCPYFGTSCFVHGSRRRAEAADIVVTNHSLLFCDLVAD----GGLLPPIRY 492 Query: 222 MIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI-----------TIAYRTELKDTQQ--- 267 + DEAH A + F SLS+ + LA + R + ++ Sbjct: 493 WVVDEAHGAEAEARRAFSLSLSAEDITRLANRVGADEASRNVFVRAERRVVVPGMEEGSS 552 Query: 268 --------LQKCADRLAQSAQDFRLQLGEPGYR-----------------GNLRELLANP 302 + A +A++F L + + ++R Sbjct: 553 LFYALTGKARSAGKAYADAAREFSAHLKDLLFFDQNKKGKGYEIVELWINSDVRSSATFA 612 Query: 303 QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKE--------INQ 354 Q++ + + E V + +G L+ A E + LK+ +++ Sbjct: 613 QVESYGRAMTEAAEKLVRVCQELVGYLEELEGAAEIQREIASTAMELKDQMNAADIILDR 672 Query: 355 PGYSYWYECTSRH------FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHF 408 +Y Y T L ++V + E + ++ S +F SATL+V+D F Sbjct: 673 APETYAYAATLSRKKDRVAEKLEALLINVGEAMNETLFERTHSTVFASATLAVDDKFDAF 732 Query: 409 TSRLGIEQAES-----LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEAN 463 S LG+ +E L S +D+ + V ++P+ N+ L +L + A Sbjct: 733 ESALGLNASEHSTCQMCKLDSSYDFDAHMTVYVASDMPEPNEAAYLAALQRLLVDVHRAQ 792 Query: 464 NGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQ-GETSKGQLLQQFVSAGNALLVATS 519 NG L T+ M ++ + + L V+ Q S L F++ + L A Sbjct: 793 NGSMLTLFTNRREMERCFDEVQPQLKVDDLRVVCQKWGVSVKGLRDDFLADEHLSLFALK 852 Query: 520 SFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQ 579 SFWEG D G TL V+I KLPF P DPL R R + LP AV+ KQ Sbjct: 853 SFWEGFDAPGATLKGVVIPKLPFAKPTDPLSCERA----ARDDQAWRRYVLPAAVLETKQ 908 Query: 580 GVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 GRLIR ADD GVL++ D RL+ + YG FL SLP RT + A +A Sbjct: 909 AAGRLIRKADDTGVLILADRRLLTKSYGKAFLNSLP--SRTIKVMTAAEIVA 958 >UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHF7_9ACTN Length = 1045 Score = 428 bits (1101), Expect = e-118, Method: Composition-based stats. Identities = 193/706 (27%), Positives = 286/706 (40%), Gaps = 113/706 (16%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + F G + + G++PR Q+ MA V +A LVVEAGTG GK+ AYL P Sbjct: 336 LDAMFDARGVVGEMYAGYEPRMEQKIMASEVLRAFSTSTNLVVEAGTGVGKSMAYLLPSA 395 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALK----YTGNVALLKGRSNYLCLERL 112 ALR V ++T + AL DQ+ ++LP + AL LKG +Y CL R+ Sbjct: 396 MAALRNGIPVGVATKTNALLDQIVYKELPLLHDALAAKGFGDLQYVALKGFRHYPCLLRI 455 Query: 113 EQQALAGGD------LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL--VTST 164 + G + + + S+ QT DI + D + P VT+ Sbjct: 456 DSVMRDGVHDVNVSGRDISQAPSLAGMLSFIEQTEYDDID---GLKIDYRVLPRYAVTTE 512 Query: 165 NDNCLGSDCPMYK-DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMI 223 + +CL CP Y CFV +RKKA + +VV NH LF D S G L+P+A + Sbjct: 513 SRDCLRRKCPFYGTYCFVHGSRKKAERSHIVVTNHSLFFRDA----SSDGSLLPKAPFWV 568 Query: 224 FDEAHQLPDIASQYFGQSLSSRQLLDLAK------------------------------- 252 DEAH A + SL + ++L L++ Sbjct: 569 VDEAHGAEAEARRALSVSLDASEMLRLSRRLASDEGARNPFVRLERRAPECEAVLPEAST 628 Query: 253 --------------DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE---------- 288 D +A + + L CA + + F L + + Sbjct: 629 LFFGLTEKAKKRGKDFAVAAASFAHGMKDLSACATQQDRRYDVFDLWINDDVRACDAFVE 688 Query: 289 -----PGYRGNLRELLANPQIQRAFLLLDDTL-ELCYDVAKLSLGRSALLDAAFERATLY 342 +R L ++ AFL D L ++ D+A +++ ++L A Sbjct: 689 LVKKASQFREAAERLASSGSELVAFLEETDGLGDVQRDIATIAIDVKSMLQACEA----- 743 Query: 343 RTRLKRLKEINQPGYSYWYECTSR----HFTLALTPLSVADKFKELMAQKPGSWIFTSAT 398 + E Y Y + + L + V + + + ++ S ++ SAT Sbjct: 744 ------IMETPDRNYVYSAHVSRKPEHVAERLEAMLIDVGQELDQTLYERTRSIVYASAT 797 Query: 399 LSVNDDLHHFTSRLGI-----EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLA 453 LSV F +G+ + LL S +D+ + VL ++P P L Sbjct: 798 LSVGHGFSSFNRAMGLGGDGPARVNECLLGSSYDFENHMRVFVLNDIPDPRDPAYLPILE 857 Query: 454 AMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQ-GETSKGQLLQQFVS 509 +L A G L T+ M + M L V+ Q S L +F++ Sbjct: 858 GLLARAHIAQGGSMLTLFTNRREMETCFDDINPRMKEEGLRVVCQKWGVSTKGLRDEFIA 917 Query: 510 AGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQ 569 L A SFWEG D G TL VII +LPF+SP+DPL K R + + + Sbjct: 918 NETLSLFALKSFWEGFDAPGSTLKGVIIPRLPFSSPNDPLSKERAAREKG----AWSKYC 973 Query: 570 LPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 LP AVI LKQ GRLIR + D G+L++ D RLV YG TFL SLP Sbjct: 974 LPAAVIDLKQAAGRLIRSSTDTGILILADRRLVTMGYGRTFLRSLP 1019 >UniRef50_C4HUU2 DinG family ATP-dependent helicase YoaA n=2 Tax=Yersinia pestis RepID=C4HUU2_YERPE Length = 464 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 277/376 (73%), Positives = 309/376 (82%), Gaps = 8/376 (2%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 M DDFA DG LA+AI GF PRE QRQMA A+++AI+ Q LVVEAGTGTGKT+AYLAPAL Sbjct: 1 MIDDFATDGALAQAIKGFNPRESQRQMAAAISEAIDAKQQLVVEAGTGTGKTFAYLAPAL 60 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 RA KVIISTGSKALQDQLYSRDLP + ALKY G +ALLKGRSNYLCLERLEQQ+LAGG Sbjct: 61 RADCKVIISTGSKALQDQLYSRDLPMMVTALKYKGKLALLKGRSNYLCLERLEQQSLAGG 120 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 DL + L D++ LR WS +TVDGDISTC VAEDS WPLVTSTNDNCLGSDCP+YKDCF Sbjct: 121 DLASETLVDLVRLRGWSAETVDGDISTCGQVAEDSFVWPLVTSTNDNCLGSDCPLYKDCF 180 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 VVKAR++AMDADVVVVNHHLFLADMVVKESGF ELIP ADVMIFDEAHQ+PDIASQYFGQ Sbjct: 181 VVKARRRAMDADVVVVNHHLFLADMVVKESGFAELIPTADVMIFDEAHQIPDIASQYFGQ 240 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 L+SRQL+DLAKDI IAYRTE++D+ QLQK ADRL QS QDFRL LG+PGYRGNLR+++ Sbjct: 241 QLTSRQLMDLAKDIIIAYRTEVRDSAQLQKSADRLTQSTQDFRLVLGDPGYRGNLRDVME 300 Query: 301 NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 P +QRA LLLDD LELCYDV KLSLGRSA+LDAA ERAT+YR RLK S+W Sbjct: 301 QPTVQRALLLLDDALELCYDVMKLSLGRSAMLDAALERATVYRNRLK--------PSSFW 352 Query: 361 YECTSRHFTLALTPLS 376 R L+ + Sbjct: 353 EGVDVRGDALSCVIID 368 Score = 194 bits (492), Expect = 1e-47, Method: Composition-based stats. Identities = 100/112 (89%), Positives = 106/112 (94%) Query: 519 SSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLK 578 SSFWEGVDVRGD LS VIIDKLPFTSPDDPLLKAR+EDCRLRGGDPF++VQLPDAVITLK Sbjct: 349 SSFWEGVDVRGDALSCVIIDKLPFTSPDDPLLKARIEDCRLRGGDPFNDVQLPDAVITLK 408 Query: 579 QGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 QGVGRLIRD DDRGVLVICDNRLVMRPYGA FL SLPPAPRTRD+A+A+ FL Sbjct: 409 QGVGRLIRDIDDRGVLVICDNRLVMRPYGAMFLNSLPPAPRTRDLAKAIAFL 460 >UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38 Tax=Enterococcus RepID=C2JLR4_ENTFA Length = 929 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 160/672 (23%), Positives = 271/672 (40%), Gaps = 64/672 (9%) Query: 18 FKPREPQRQMAVAVTQAIEKG--QPLVVEAGTGTGKTYAYLAP---ALRAKKKVIISTGS 72 F R Q +M V +G + L +EA TGTGKT YL P +K VIIST S Sbjct: 261 FAYRAEQSRMMNLVYDHFTEGTTKDLFIEAATGTGKTLGYLLPMSYLATPEKPVIISTVS 320 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 LQ+QL +DLP ++ + ++K +YL L+ + L Q + Sbjct: 321 IVLQNQLVEKDLPLANQICQGKLRGIVIKSHRHYLDLQCF-KATLNQPTPQKQYALYQMG 379 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 + W +T GD+ + W VT + L +Y+ F+ KK ++ Sbjct: 380 VLVWLLETETGDLDELQLTNLNHLFWKEVTHRGLDFLSKKDELYEVDFLRHLYKKVAQSN 439 Query: 193 VVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSR------- 245 V++VNH FLA +++ L+PE+ +I DEAH LPDIAS+ + ++S Sbjct: 440 VLIVNHA-FLAQESLRKQ---PLLPESPWLIIDEAHHLPDIASRMASERVNSVILKKQVT 495 Query: 246 ----------QLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNL 295 L + + + R Q L D + + R + Sbjct: 496 HFIEKEQLFVALQQIFQQFSEEQRFVKIYQQGLLDFVDEWQDFLFELHRLFSKTQKRIDH 555 Query: 296 RELLANPQIQRAFLLLDDTLELCYDV---------AKLSLGRSALLD------------- 333 +ELL + + + +KL + L+ Sbjct: 556 QELLLTKERIDYLSAAGEKHSQTLQLLLQELLTIQSKLQQTIMSQLETFSLADRIVFVRL 615 Query: 334 -AAFERATLYRTRLKRLKEINQPGYSY-WYECTSRHFTLALTPLSVADKFKELMAQKPGS 391 F+ + +P + + H + + L + + + Sbjct: 616 FQFFDEIERIHHCFSIYLDDWRPRWVKEYLPQNEDHGLIEIHDLEASLLPETKWYPRYER 675 Query: 392 WIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSAR- 450 I+TS TL ++ + RLG+ + LP+P++Y+ A + V S Sbjct: 676 IIYTSGTLKFGNNKKYLPQRLGLTEVTFKTLPTPYNYAENARVYVPEEAVAIQNASSYEM 735 Query: 451 --QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQG-ETSKGQLL 504 ++ + ++ +L TSH ++ + Q + + VL QG S+ ++L Sbjct: 736 GQYISDTIEKLMAQEERSMLVLFTSHELLSTVYHQVQPRLLEKGQEVLAQGISGSREKIL 795 Query: 505 QQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDP 564 ++F + +L+ SFWEGVD+ G L L+I+ +LPF +P PL++A+ G P Sbjct: 796 KRFSNGKPNVLLGADSFWEGVDLPGTALQLLIVTRLPFENPKRPLVQAKYAYLEAEGIQP 855 Query: 565 FDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD-- 622 F + +P A + L+Q +GRLIR +DRG L+I D RLV YG + + P ++ Sbjct: 856 FAQEAVPKAALRLRQALGRLIRSEEDRGALLILDRRLVTAKYGKRLIKAFPKGLSVKEAP 915 Query: 623 ----IARAVRFL 630 + FL Sbjct: 916 MPEILEELKEFL 927 >UniRef50_C8RVT0 ATP-dependent helicase DinG (Fragment) n=2 Tax=Corynebacterium jeikeium RepID=C8RVT0_CORJE Length = 609 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 186/605 (30%), Positives = 266/605 (43%), Gaps = 56/605 (9%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKKKV 66 LA G PR Q++MA AV +AI+K L V+AGTGTGK+ AYL P A+ + V Sbjct: 11 LAVNDLGGAPRPGQQKMAKAVAEAIDKEHHLAVQAGTGTGKSLAYLIPSIAAAMDSDYPV 70 Query: 67 IISTGSKALQDQLYSRDLPTVSKAL----KYTGNVALLKGRSNYLCLERLEQQALAGGDL 122 I+ST + ALQ QL RDLP ++KAL A+ KGR NY+CL +++ G Sbjct: 71 IVSTATIALQRQLVERDLPRLAKALEPELPRPLEFAIQKGRGNYVCLNKVQNAQTESGVE 130 Query: 123 PVQIL-----------SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG- 170 + + V L W+ +T DGD D +AW V+ ++ CLG Sbjct: 131 EAEESLLDPSQLSATGAQVARLHEWAGETEDGDRDNLPQGVSD-RAWRQVSVSSRECLGA 189 Query: 171 SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQL 230 + CP + CF +AR A DADVVV NH L D +V ++PE D +I DEAH+L Sbjct: 190 TRCPFGEQCFAERARAHAADADVVVTNHALLAIDALVD----APVLPEHDTVIVDEAHEL 245 Query: 231 PDIASQYFGQSLSSRQLLDLAKDIT-IAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEP 289 D + LS + LAK +A +L + DR ++ + Sbjct: 246 EDRITSVATAELSPTAIAVLAKRAAKLAVSGADAAGDELAEAGDRWTEALKAEAAASRNN 305 Query: 290 GYRGNLRELLAN---PQIQRAFLLLDDTL-------------------ELCYDVAKLSLG 327 G E +Q L D + + + + Sbjct: 306 DRFGTGIEGRWTGVPEALQVPLAALRDAAWKTNRQVSGIPASEFANDSKKVAERLAVIVA 365 Query: 328 RSALLDAAFERATLYRTRLKRLKEINQ--PGYSYWYECTSR----HFTLALTPLSVADKF 381 L D R + WY S + + PLSVAD Sbjct: 366 TEELNDTCVRILNASRVGEGTSADDEDLLGEDVIWYTADSGPRAPKHVVRVAPLSVADLL 425 Query: 382 KELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE-SLLLPSPFDYSRQALLCVLRNL 440 ++ + + + I TSATL++ S G+ ++ +L +PFD +L V R+L Sbjct: 426 RQRLFGR-NTVILTSATLALGGKFTSMLSCWGLPKSTPTLDAGTPFDARTHGILYVARHL 484 Query: 441 PQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSK 500 P + ++ +I A GR L +S D+AEQ R + +LLQGE S Sbjct: 485 PPPGRDRASDASVDETARLINAAGGRTLGLFSSRRAAEDMAEQLRTVVPYEILLQGEDSM 544 Query: 501 GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLR 560 L+++F +A L T W+GVDV G +LSLVIID++PF PDDPL +AR E R Sbjct: 545 STLVEKFRKNQSACLFGTLGLWQGVDVPGKSLSLVIIDRIPFPRPDDPLQQARQEAADQR 604 Query: 561 GGDPF 565 GG F Sbjct: 605 GGSGF 609 >UniRef50_Q1EM22 ATP-dependent helicase DinG n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM22_9BACT Length = 850 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 160/677 (23%), Positives = 293/677 (43%), Gaps = 61/677 (9%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----AL 60 F+ G L ++ G++ R+ Q A+ + ++IE+ L++E GTGTGK+ AYLAP + Sbjct: 161 FSEGGLLQDSMKGYEFRQEQFMTALEIAESIERDSNLMIEVGTGTGKSIAYLAPVAYACI 220 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYT-GNVALLKGRSNYLCLERLEQ--QAL 117 + ++ST ++ LQDQL+ +D+ + V+++KGR YLC +L + Sbjct: 221 STMNQAVVSTRTRILQDQLFKKDVEILKTFPNLDDLRVSVMKGRERYLCARKLFEVVNLA 280 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 L ++ ++ + WS T +GD+ E +++ +C CP ++ Sbjct: 281 LNKMLDEEMSKELSGILIWSMITGEGDLDPLPIKEE---MRRMISGNRFDCTRRLCPFFE 337 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVK--------ESGFGELIPEADVMIFDEAHQ 229 C R+ A +D+V+ NH ++ ++ G L+P ++ DEAH+ Sbjct: 338 ICPYYVQRENAKSSDIVITNHSFLFSEANIRLSDGDAEEREDIGTLLPRFKYLVVDEAHE 397 Query: 230 LPDIASQYFGQSLSSRQLLDLAKDITIAYRTEL-------------KDTQQLQKCADRLA 276 L +Q +L + + R K +L++ L Sbjct: 398 LEASLTQAMSYRFEPYELAGTVRRLIKTVRDSFGFLKRHFDEGFLRKLWAKLKEATANLD 457 Query: 277 QSAQDFRLQLGEPG------YRGNLRELLA------NPQIQRAFLLLDDTLELCYDVAKL 324 + + + G P + G E++ + +Q + T+++ DV Sbjct: 458 KQSTELVRVTGSPESGSRITFTGKELEVMIPLLTKISDTLQTHVYIGTQTMQMLDDVEDR 517 Query: 325 SLGRSALLDAAFERATLYRTRLKRLKEI--NQPGYSYWY---ECTSRHFTLALTPLSVAD 379 + L T R +K++ I +Q + E + ++ +P+ D Sbjct: 518 NEKIDGLEAEVSRILTETREWMKQIAGITSSQESRVIYVNRLERRPDNLSIISSPVE-ND 576 Query: 380 KFKELMAQKPGSWIFTSATLSV----NDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALL 434 + IF SATL V +D ++ LG E++ L + FDY++Q Sbjct: 577 TLMASIFPDVSVKIFISATLWVYSRGSDGFNYARRILGTSSNNEAVRLGTSFDYTQQLKF 636 Query: 435 CVLRNLPQ--TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM-TLP 491 V +LP N + + + G +L TS+ M+ + + + Sbjct: 637 FVPVDLPDYFPNSLTYLESASDITLNALNIVGGGSMVLFTSYEDMKWTLSRISGRLGDMS 696 Query: 492 VLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL 550 + +Q E S +L V++ +++ +FWEGVD+ G+ L L+I+ KLPF PD+PL+ Sbjct: 697 IHIQDREDSPTTILADHVNSEKSVIFGARAFWEGVDLPGEQLRLLIVYKLPFERPDEPLI 756 Query: 551 KARMEDCRLRGG-DPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV--MRPYG 607 +AR++ R + ++ P + +QG+GRLIR +D GV+++ D R+V R Y Sbjct: 757 EARIKHYGKRSFVEGMNKYYYPKMITAFRQGLGRLIRTRNDHGVVIVIDKRIVDPNRVYS 816 Query: 608 ATFLASLPPAPRTRDIA 624 LASLP + IA Sbjct: 817 KKLLASLPAGTNVQAIA 833 >UniRef50_A1WDD4 Helicase c2 n=11 Tax=Comamonadaceae RepID=A1WDD4_ACISJ Length = 758 Score = 420 bits (1081), Expect = e-116, Method: Composition-based stats. Identities = 185/720 (25%), Positives = 279/720 (38%), Gaps = 112/720 (15%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQ--------------PLVVEAGTGTGKTYAY 55 + ++ GF+ RE QR+MA V Q + Q VV+AGTG GK+ AY Sbjct: 45 AVVQSTAGFRVREGQRRMAEQVAQTFSQAQLGKLEDDDALPQRAIAVVQAGTGVGKSLAY 104 Query: 56 LAPALRA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLER 111 PA+ +V+IST + ALQ+QL +DLP ++ ++ AL KGR Y+C + Sbjct: 105 SVPAIAMALARGTRVLISTATVALQEQLVHKDLPALAARMEQPFQFALAKGRGRYVCKLK 164 Query: 112 LE------------------------QQALAGGDLPVQILSDVILLRS-----WSNQTVD 142 LE ++A G P + + + D Sbjct: 165 LERLAGGGAAGPGGDGDLPDDDLFADEEAEQRGKRPRHESEARMKFYASMADALATSEWD 224 Query: 143 GDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFL 202 GD T + + +AW V + +C G CP++ C + RK+ + A V+V NH L L Sbjct: 225 GDRDTL-ATPPEPEAWSPVAAEASSCTGKHCPVFNQCTYYERRKQLVAAQVIVANHDLLL 283 Query: 203 ADMVVKESGFGELIPEADV--MIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYR- 259 + + + L+PE D ++ DEAH LP A F +L + + + A R Sbjct: 284 SSLGAR------LLPELDNCLLVIDEAHHLPATALDQFACEADLSRLTWIDRLASRALRI 337 Query: 260 ---TELKDTQQLQKCADRLAQSAQDF----------RLQLGEPGYR-------------- 292 E+++ + A RL + QD +L+ PG R Sbjct: 338 GQLVEVEEIADIPNHAARLRAALQDAARLVMDVYGEQLRAPVPGRRQFASSLPTRARVAG 397 Query: 293 GNLRELLANP-------------QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERA 339 G L E L P ++ L + D A+ A + R Sbjct: 398 GVLPEALVEPFSQAAHHAEGFLNALRAISKALRSEMRDKPDEARRLSQLYAQIGVLAPRL 457 Query: 340 TLYRTRLKRLKEINQPGYS---YWY--ECTSRHFTL--ALTPLSVADKFKELMAQKPGSW 392 + L + G W+ E + +P+ + + + Sbjct: 458 EAVHAAAQLLLQDAPEGAVPAAKWFTLEVEGDFIVVRAHASPVLPGNTLRNHLWSAVRGA 517 Query: 393 IFTSATLSVNDDLHHFTSRLGI---EQAESLLLPSPFDYSRQALLCVLRNLPQTNQ-PGS 448 + TSATL+ F G+ E +L +PSPFDY+ Q L + Sbjct: 518 VLTSATLTSCGQFDFFLRESGLFGDEAVTTLAVPSPFDYALQGTLVATETRAEPRDAQAF 577 Query: 449 ARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV 508 ++ L + +L TS MR + M VL+Q + QLL + Sbjct: 578 TAEMVDALLSDLALVEAGALVLFTSREQMRQAVDMLPTAMRSAVLVQNTLPRPQLLARHR 637 Query: 509 S----AGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDP 564 +++ SF EG+D+ G + I KLPF PDDP+ +AR E R G DP Sbjct: 638 ERVAEGQPSIIFGMQSFGEGLDLPGRLCESLFITKLPFAPPDDPVGEARAEWLRGAGRDP 697 Query: 565 FDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA 624 F E+ +P I L Q VGR IR +DR + D RLV YG L LPP R A Sbjct: 698 FSELVVPATAIRLAQWVGRAIRTEEDRAHVYCYDKRLVRTGYGQRLLQGLPPFALARRAA 757 >UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9J0_9ACTN Length = 1011 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 178/691 (25%), Positives = 281/691 (40%), Gaps = 90/691 (13%) Query: 4 DFAPDGQLAKAI--PGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP--- 58 DF+ G +A+ ++ R Q++MAV VT GQ V+E GTG GK+ AYL P Sbjct: 307 DFSSAGCVAQMFLSQNYEVRPTQQEMAVRVTSLQNSGQCGVLEVGTGVGKSLAYLLPSVS 366 Query: 59 -ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLE------- 110 A++ ++ ++T + AL +QL ++LP + + + ++KG +Y LE Sbjct: 367 RAVQNDIQIGVATKTNALAEQLIKKELPQLHEVYPKDFSYLIVKGAEHYPYLEGIDTLMR 426 Query: 111 ------RLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTS- 163 + + + + +IL+ ++ S + VD D+ + V S Sbjct: 427 EEFDTSQFKDIRFSSSKIKAEILTTAAIIYSACCELVDVDVDSLGIRWNMIPKGDFVASH 486 Query: 164 -TNDNCLGSDC-PMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADV 221 T N S C P Y + + R++ A +VV NH L D+ + L P Sbjct: 487 RTGSNHTLSTCAPHY---MLSELRERTQHAHIVVTNHALLATDIALGH----VLFPLVSN 539 Query: 222 MIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDT-------------QQL 268 I DEAH D + Q LS DL + L D Q+L Sbjct: 540 WIVDEAHGFADQVRDQWAQELSQDVFSDLFYTLGGIKTGLLGDMFSSSSNSEQKPLLQKL 599 Query: 269 ---------------QKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF-LLLD 312 + D L D R + ++ + ++ Q A+ LD Sbjct: 600 ISKAAVLVAQLRVKNEDLFDCLNTVVLDDRYHFSRGAHTHMIQRVDSSIVSQDAWNAFLD 659 Query: 313 DTLELCYDVAKLSLGRSALLDAAFERATLYRTR---------------LKRLKEINQPGY 357 E L L A A+L+R + RL + ++ G+ Sbjct: 660 KMSEFAKTFDTLKAVLIQLCKAISNEASLHRDVDFKRVCAYVSSYLGVITRLTQGSEDGF 719 Query: 358 SYWYECTSR----HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG 413 Y E + L L + + S ++TSATLS+ +F +G Sbjct: 720 VYTVERVKQKKAYQTYLKEMCLDIGKRLYTDWYLDAQSVLYTSATLSIEQSFEYFDHSVG 779 Query: 414 IEQ-----AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCF 468 +++ E+ LPSPFDY + V NL + L+ +L I A NG Sbjct: 780 LDRLNSDRVETKTLPSPFDYENHMGVIVPNNLVLPQHEKYIQCLSNLLFDIHVAMNGSVL 839 Query: 469 MLCTSHAMMRDLAEQFRATM---TLPVLLQ-GETSKGQLLQQFVSAGNALLVATSSFWEG 524 L T+ M ++ + + L +L Q TS Q+++ F A LVA SFWEG Sbjct: 840 TLFTNRREMEAVSSKLVPRLESHGLTLLEQLPTTSAQQIMRGFKKDTTASLVALKSFWEG 899 Query: 525 VDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRL 584 +D GDTL V+I +LPF P DP+++A E R + LP A+ ++Q GRL Sbjct: 900 IDAPGDTLRCVVIPRLPFVPPTDPIVEALTE----RDSSTWWNYVLPRAITEVRQAAGRL 955 Query: 585 IRDADDRGVLVICDNRLVMRPYGATFLASLP 615 IR D G+++I D R++ + YG L +LP Sbjct: 956 IRTQHDSGLVIIADTRVLSKAYGKHVLHALP 986 >UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D091_MYXXD Length = 988 Score = 414 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 180/707 (25%), Positives = 282/707 (39%), Gaps = 84/707 (11%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 ++ G L +A GF R Q +A AV +A+ G L +EAGTGTGK+ AYLAPA Sbjct: 275 VSALLGVGGALEQAGEGFMSRAAQLDVAQAVARALSDGGQLAMEAGTGTGKSLAYLAPAA 334 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 R +KV ++ +K LQDQL +DLP + +A K ALLKG++NYLC R + Sbjct: 335 LFAARNGRKVGVAPHTKTLQDQLLEKDLPRLHRATKGAFGYALLKGQTNYLCRRRALEAT 394 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTC-VSVAEDSQAW----PLVTSTNDNCLGS 171 + + LR++ ++ +GD+ E P V S LG Sbjct: 395 RVEPGMGHSARAPRAYLRAYLRRSGEGDLDRLSHWFRERFPVLMALVPAVRSEASTTLGE 454 Query: 172 DCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLP 231 CP + CF A +A +ADV+++N L A + P+ D ++ DEAH++ Sbjct: 455 KCPHFHRCFYHSAVAQAREADVLIINQSLAFA--------WPARYPKLDHLVLDEAHEVE 506 Query: 232 DIASQYFGQSLSSRQLLDLA-----KDITIAYRTELKD-------------TQQLQKCAD 273 D+A+ LS L L +D EL+ +++ Sbjct: 507 DVATTALTLELSDLAFLRLIERLHGRDGRRGLFAELRKALSASRRTETRSLMGEVEDGLR 566 Query: 274 RLAQSAQDFRLQL---------------------GEPGYRGNLRELLANPQIQRAFLLLD 312 RL A+D ++ E +R L A ++ + Sbjct: 567 RLLDDARDLGARVTELCEPTATAVGEDPDEGAYSPELRITATVRTLPAWEPVREGLEGVR 626 Query: 313 DTLELCY------------DVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 L+ + ++A L A L PG Y Sbjct: 627 GALQALHVLLSVRVLAALPELAARQPALERELSGATTELGELAVLAGELSGEAAPGRCYA 686 Query: 361 --YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE--- 415 E + ++L+ P+ V+ + A+ + + SATL D RLG++ Sbjct: 687 ATAEPKRQRWSLSAQPVDVSAYVSKDFAESKRTLVLASATLGTGDGFPFVLRRLGLDGRG 746 Query: 416 ---QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCT 472 + +PF QAL+ ++ + P+ ++ + + + + GR L Sbjct: 747 GRPAPRLVRAATPFKLHEQALVVLVTDAPRAHEEAFVEWASLRISGLAQTMGGRVLGLFA 806 Query: 473 SHAMMRDLAEQFRATMT---LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRG 529 S M + R + + VL Q L + +L+ T SFW+GVD+ G Sbjct: 807 STRRMERVGTSVRGRLDPLGIEVLRQSRGHSRSLAARQEKDTGTVLLGTKSFWQGVDIPG 866 Query: 530 DTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGD--PFDEVQLPDAVITLKQGVGRLIRD 587 + V IDKLP PL+ AR E GG+ F +LP A++ L+QGVGRLIR Sbjct: 867 RGVGCVFIDKLPLEPAMRPLVAAREEPLSRSGGEYMGFLHYRLPRALLQLRQGVGRLIRA 926 Query: 588 ADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPS 634 DRGV++I D Y + +L R + A L I + Sbjct: 927 TTDRGVVIISDP--GHPSYRGHLMNAL-EGYRVEALPWAQARLRIHA 970 >UniRef50_A0LUZ2 Helicase c2 n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LUZ2_ACIC1 Length = 710 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 187/670 (27%), Positives = 275/670 (41%), Gaps = 95/670 (14%) Query: 37 KGQPLVVEAGTGTGKTYAYLAPAL----------RAKKKVIISTGSKALQDQLYSRDLPT 86 + L+V+AGTGTGK+ AYL PA+ ++ VI++T + ALQ QL RDLP Sbjct: 45 DKRHLLVQAGTGTGKSLAYLVPAMWHVTARDDADDERRPVIVATATLALQRQLVERDLPR 104 Query: 87 VSKA----LKYTGNVALLKGRSNYLCLERL------------------------------ 112 + + L A+LKGR NYLC RL Sbjct: 105 LVEVLSPLLPRRPTFAILKGRRNYLCRLRLGGSDQPDLLADDLDVLPMDALPMDVARAGA 164 Query: 113 --EQQALAGGDLPVQILSDVILLRSWSNQTVDGD------ISTCVSVAEDSQAWPLVTST 164 ++ G + L +R + ++ D S +W TST Sbjct: 165 APAREKTGGAGVIAAGLPGTANVRQGTGESPDAPAAGFLAWSALGREVARITSWANETST 224 Query: 165 NDN---------------------CLG-SDCPMYKDCFVVKARKKAMDADVVVVNHHLFL 202 D C+G S CP CF AR +A AD+VV NH + Sbjct: 225 GDRDELVPGVSERAWGQFAVTARECVGASRCPHGSRCFSELARIRAGQADIVVTNHAMLA 284 Query: 203 ADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTEL 262 D++ G ++PE DV+I DEAH+L D + L + ++ +A + Sbjct: 285 VDVL----GDAPVLPEHDVVIVDEAHELVDRVTAAATAELGAADVVRVANRLRTFASV-- 338 Query: 263 KDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVA 322 A RL ++ +F L + G L +L + + D E + Sbjct: 339 --------AAGRLERAVGEFDAALRDVSV-GRLIDLPERLVTVLSGIR-DAAREGVSALL 388 Query: 323 KLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR-HFTLALTPLSVADKF 381 A L+ T + L G W + R L PL VA Sbjct: 389 GEITVDGRRAQARAAAEELFDTASRFLA--GDSGDVRWLDRDDRGGAVLRAAPLDVAPLL 446 Query: 382 KELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYSRQALLCVLRNL 440 + + + + TSATL+V H RLG+ +L + SPF Y RQ +L V +L Sbjct: 447 RNAIFASRIA-VLTSATLTVGGSFHPMIERLGLHHDVRTLDVGSPFSYQRQGILYVASHL 505 Query: 441 PQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSK 500 P + G + L ++ A GR L +S ++ A R + PVL QG+ + Sbjct: 506 PPPGRDGISADALEELVALMTAAGGRTLGLFSSMRAAQEAAAFARERVDFPVLCQGDDAT 565 Query: 501 GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLR 560 +L+++F + L T S W+GVDV G LV++D++PF PDDPL+ AR + Sbjct: 566 AELIRRFAADAQTCLFGTLSLWQGVDVPGAACQLVVVDRIPFPRPDDPLMAARQQAVTEA 625 Query: 561 GGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 GG+ F +V A + L QG GRL+R DRGV+ + D+RL Y +SLPP T Sbjct: 626 GGNGFLQVAAGHAALLLAQGCGRLLRSPHDRGVVAVLDSRLATARYARFLRSSLPPFWYT 685 Query: 621 RDIARAVRFL 630 D R L Sbjct: 686 TDRDLVCRSL 695 >UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C2ES78_9LACO Length = 960 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 170/688 (24%), Positives = 292/688 (42%), Gaps = 80/688 (11%) Query: 16 PGFKPREPQRQMAVAVTQAIEKGQP--LVVEAGTGTGKTYAYLAP---ALRAKKKVIIST 70 + R Q +M ++ +P ++VEAGTGTGKT YL P A KK++IST Sbjct: 271 DSLEFRPTQSKMMNSIYNNYTHDEPKSMIVEAGTGTGKTLGYLLPLAYAAYPDKKIVIST 330 Query: 71 GSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL-EQQALAGGDLPVQILSD 129 + LQ Q+ R + ++ L + N ++KG S+YL L + ++ +Q++ Sbjct: 331 ATNLLQQQIAQRTMKQLNHLLPFELNGVVIKGNSHYLDLAKFVHSLSIVEDSDYIQLIKA 390 Query: 130 VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAM 189 IL+ W +T GD+ A+ S + + L D Y D F+++ +K+ Sbjct: 391 KILV--WLLKTTSGDLDELNLNAQRSPYFAEIRHQGVKTLREDNEFYNDDFLIRRQKQLH 448 Query: 190 DADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQ--- 246 A+V++ NH +A +E G G P ++ DEA L + + Q+L + Sbjct: 449 TANVIITNHAYLVAH--AQELGDGTRRP---YLVVDEAQHLSESILRRSRQTLDFQSIRT 503 Query: 247 ----LLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANP 302 L +L D + + L K L + + + + R+ + N Sbjct: 504 AIHVLENLVSDNQERNLANIFEEHALGKYNVELLRDDLRSLSEATDAFQQALYRQFMLNV 563 Query: 303 QIQRAFLLLDDTL--ELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGY--- 357 Q + L++ L + + + S L+ A + L+ L E + Sbjct: 564 QGNNSNELIEQPLDNQQLFSLLTPSNKPIMQLEQALASVQFHFMALRHLFEQQADRWLFS 623 Query: 358 ------------------------------------SYWYEC----TSRHFTLALTPLSV 377 ++W L+ L+V Sbjct: 624 DRYLMSQFQSQWMVLADADNKLHQFIETLEERGEAAAFWLTVQQSAEHSSMRLSGGLLAV 683 Query: 378 ADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL--LLPSPFDYSRQALLC 435 E + +F ATL + ++ +L +E+ +L SPF+Y+ +A L Sbjct: 684 NHFLTENVYPYFAQPLFVGATLFTSSRSNYLYEQLDLEKDRTLQKRFASPFNYAERAELL 743 Query: 436 VLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---T 489 V ++ P NQ R LA + + + N + +L S + + Q + T Sbjct: 744 VAKDAPIPNQTNNEEYTRYLAQTIYQLCKNNQCQTMILFNSLVTIEQVYSQLKETDLFDQ 803 Query: 490 LPVLLQGETSKGQ-LLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDP 548 +L QG T + + LL+QF S +++L+ SSFWEG+D+ +L L+II +LPF SP++ Sbjct: 804 RDILAQGITGRREKLLKQFASGTSSILLGASSFWEGIDLPKSSLELLIITRLPFDSPNEI 863 Query: 549 LLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGA 608 + +A + G +PF LP A + L+QG+GRL+R +D GV VI D+R+ R YG+ Sbjct: 864 MTRAHNNLLKREGKNPFYHSALPKATMRLQQGIGRLLRTPNDFGVGVILDSRISTRRYGS 923 Query: 609 TFLASLPP------APRTRDIARAVRFL 630 + L +LP P T + A +FL Sbjct: 924 SILKNLPKDLPIKELPTTELVESAKKFL 951 >UniRef50_UPI0001C37E7F helicase c2 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37E7F Length = 633 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 157/635 (24%), Positives = 278/635 (43%), Gaps = 55/635 (8%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 G + R Q M+ + QAI + L VEA G GK+ AYL P + R +K++II+T + Sbjct: 23 GLQRRPGQIAMSQEIAQAIADNKSLAVEAEVGIGKSIAYLVPLVIQYFRERKQMIIATST 82 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 ALQDQL D+ V + L +V + KG NY+CLER + D Q Sbjct: 83 IALQDQL-ESDILNVLELLGVRADVEIAKGMKNYVCLERFHRFTREHKDYTRQFDRAKYG 141 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 L+ + V V ++ + S D C S+C C R++ + D Sbjct: 142 LQ----------LRQDVYVPDEVWDKICINSFGDKC--SECSFRHKCEYSLMRERIRNKD 189 Query: 193 -VVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLA 251 +V+ N ++ ++ + +ESG G P+ ++ DEAH L + F + S +++ + Sbjct: 190 EIVICNQNMLVSHFIKEESGEGIFKPDFSTLVVDEAHNLENNFRDAFTTAYSQKEISNEV 249 Query: 252 KDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLL 311 T + L + Q DF L ++ + + Sbjct: 250 LKATENRKNILSSR------IVEIIQMVDDFFKYLKYDIHQQQSKSIDDMRTYYY----- 298 Query: 312 DDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLA 371 +V KL L + + R L+ + + W T + + Sbjct: 299 ----RPIREVRKLVLRIRSAMLEIEMRTNRRLNCLQMFRNLENKDCLVWL-TTEKGVRVN 353 Query: 372 LTPLSVADKFKELMAQKPGSWIFTSATLSVNDD------LHHFTSRLGIEQAESLLLP-- 423 + + + L+ + I TSAT++ + +F + LG + P Sbjct: 354 ICKKDIRREIGRLLFTESRRTILTSATITSQNSGTLSEKYRYFLNNLGCPNNVCVSEPKK 413 Query: 424 SPFDYSRQALLCVLRNLPQTNQPG---SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL 480 SP++Y + +++ V LP N+ + ++ G+ +L T+ M+ + Sbjct: 414 SPYNYDKHSIMYVSDKLPIPNKRNRTAYRNAAIKEIVKLLNITEGKALILFTAKDDMQYV 473 Query: 481 AEQFRAT-MTLPVLLQGE-TSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIID 538 ++ + +++Q E T++ + L++F + N++L+ T ++WEG++++G++LS VII Sbjct: 474 FKKLSNMGLPYKIMVQDESTTQERRLEKFQNNVNSVLLGTGTYWEGINIKGESLSQVIIF 533 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 KLPF P DP+++ +M + P +V +P+ +I LKQGVGRLIR ++D+G++ I D Sbjct: 534 KLPFPVP-DPIVEYKM----RKTECPLMDVAVPEMIIKLKQGVGRLIRSSEDKGIVSILD 588 Query: 599 NRL---VMRPYGATFLASLPPAPRTRDIARAVRFL 630 R+ Y LASLP T DI F Sbjct: 589 PRVSKSQNTAYREDTLASLPEKNTTEDITELEEFW 623 >UniRef50_P27296 Probable ATP-dependent helicase dinG n=174 Tax=Enterobacteriaceae RepID=DING_ECOLI Length = 716 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 176/683 (25%), Positives = 281/683 (41%), Gaps = 82/683 (12%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAI--EKGQPLVVEAGTGTGKTYAYLAP----ALRAK 63 L + IP F PR PQRQM V + + E+G+ L +EA TG GKT +YL P A + Sbjct: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 Query: 64 KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL---------EQ 114 K +++ST + ALQDQ+YS+DLP + K + GR Y+C L +Q Sbjct: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQ 135 Query: 115 QALAGGDLPVQILSDVILLR------SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC 168 LA D + + R DG +A D W +++ +C Sbjct: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDH-TDIAIDDDLWRRLSTDKASC 194 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAH 228 L +C Y++C AR++ +A+VVV NH L +A M ES P+ +++ DE H Sbjct: 195 LNRNCYYYRECPFFVARREIQEAEVVVANHALVMAAM---ESEAVLPDPKNLLLVLDEGH 251 Query: 229 QLPDIASQYFGQS---------LSSRQLLDLAKDITIAYRTEL-----------KDTQQL 268 LPD+A S L L +R + ++L Sbjct: 252 HLPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEEL 311 Query: 269 QKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGR 328 + L + E +R + EL ++ L E+ +A+L L Sbjct: 312 YELIASLNNILNLYMPAGQEAEHRFAMGELP--DEVLEICQRLAKLTEMLRGLAELFLND 369 Query: 329 SALLDAAFERATLYR------------------TRLKRLKEINQPGYSYWYECTSR---- 366 + + + L+R RL L + + + W R Sbjct: 370 LSEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQL 429 Query: 367 HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ---AESLLLP 423 H + V+D+ + L+ + I TSATL + G+++ + L Sbjct: 430 HLWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALD 489 Query: 424 SPFDYSRQALLCVLRNLPQT---NQPGSARQLAAMLRPIIEANNG-RCFMLCTSHAMMRD 479 SPF++ Q + + R + N+ ++AA R +E+ +L S M+ Sbjct: 490 SPFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQR 549 Query: 480 LAEQFRATMTLPVLLQGETSKGQLLQQFV----SAGNALLVATSSFWEGVDVRGDTLSLV 535 + + L +L+QG+ + +L++ + ++LV SF EG+D++GD LS V Sbjct: 550 FLDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQV 608 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 I K+ F D P++ E + PF+ LP A L Q VGRLIR G +V Sbjct: 609 HIHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVV 668 Query: 596 ICDNRLVMRPYGATFLASLPPAP 618 I D RL+ + YG L +LP P Sbjct: 669 IYDKRLLTKNYGKRLLDALPVFP 691 >UniRef50_C0FSD6 Putative uncharacterized protein n=2 Tax=Roseburia RepID=C0FSD6_9FIRM Length = 669 Score = 399 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 156/647 (24%), Positives = 273/647 (42%), Gaps = 48/647 (7%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----LRAKKKV--IIST 70 G R Q+++++ + +A+++ + + EA GTGKT+AY+ + + KK+ +IST Sbjct: 21 GMNLRVKQKELSLEMLRALQENKLALCEAEVGTGKTHAYILALTVHNIYSDKKIPAVIST 80 Query: 71 GSKALQDQLYSRDLPTVSKAL------KYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 + ALQ L +P +S L + + KG+ +Y+C RL+ + +L Sbjct: 81 STIALQKALTEEYIPQISGILLEHHVIDKPLSFVVRKGKRHYVCDSRLKIYETSLKNLQR 140 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 ++ +++IL + + + D + N CP C + Sbjct: 141 EVDANLILELARLGE-QEFDRIDLDDAVLTPYVKGRI---NVFRCNKSCPYSLLCRFMNF 196 Query: 185 RKKAM--DADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 +KK M + D + NH+ LAD++ ++ G L P M+FDE+H+L D A Q + Sbjct: 197 KKKCMTDNFDFQITNHNYILADLIGQKQGRKPLFPGYGAMVFDESHKLIDAARQMYSTVW 256 Query: 243 SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQL-----GEPGYRGNLRE 297 + + + RT +L +LA+ + +L G G+ E Sbjct: 257 DEQDAEFIVGLSEVNRRTT--GMDELTVLRSQLAEYNRQIFDRLAGDLAGNHTREGSRIE 314 Query: 298 LLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGY 357 ++ + + LE + + G+ L +R +L +N Sbjct: 315 IVIGSMEKIYIRHMAKALEQLPLSYQENSGQKMRLQGLKKRCQELTDKLTIF--LNSGNS 372 Query: 358 SYWYECTSR-HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ 416 W E L P+ + + +P I TS T+SV D HF G+ Sbjct: 373 ICWMEKRENGRLALCAVPMELEQVLFRDIWSRPIPVIITSGTMSVRGDFSHFKRMTGLSF 432 Query: 417 AESLLL-----PSPFDYSRQALLCVLRNLPQTN--QPGSARQLAAMLRPIIEANNGRCFM 469 A + PSPFD+ LL + +P N + + + I+ A +G + Sbjct: 433 AALSRIMETSKPSPFDFQSNGLLYIPERMPFPNIRDDRYIQAIMEEIVQIVSATHGHTLI 492 Query: 470 LCTSHAMMRDLAEQFRATM-TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 L TS+ +M + + + P+ L G + ++ F +GN +L A+ S EG+D+ Sbjct: 493 LFTSYWLMERVFYGLKEQLSDYPLFLMGR-GRLDVISSFRRSGNGVLFASDSAGEGIDLA 551 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQ----LPDAVITLKQGVGRL 584 GD LS +I+ KLPF P DP+++ + D FD + +P+ +I L+Q GR Sbjct: 552 GDILSSLIVVKLPFPVP-DPVMEYQRNQY-----DDFDLYRRDIIIPEMLIKLRQWFGRG 605 Query: 585 IRDADDRGVLVICDNRLVMR-PYGATFLASLPPAPRTRDIARAVRFL 630 IR D V I D+R +R Y A L ++P P T + F+ Sbjct: 606 IRREKDTAVFSILDSRASLRGRYRAEILNTMPTMPVTDRLMDVADFI 652 >UniRef50_A6BD56 Putative uncharacterized protein n=7 Tax=Clostridiales RepID=A6BD56_9FIRM Length = 658 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 149/642 (23%), Positives = 256/642 (39%), Gaps = 48/642 (7%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK------------ 64 G RE Q ++ + A+ K + + +AG G GKTYAYL + +K Sbjct: 27 GLHVREEQIRLCHEMLDALMKNEITLCDAGVGIGKTYAYLTACILMRKYSVLHSGYSGCD 86 Query: 65 --KVIISTGSKALQDQLYSRDLPTVSKAL------KYTGNVALLKGRSNYLCLERLEQQA 116 V++ST S ALQ + +P +S L + + KG+ +++C RL Q+ Sbjct: 87 RRSVVVSTSSIALQKAIIEEYVPFLSDVLLKADLLQGELKAVVRKGKEHFVCDYRLAQRL 146 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 A D L N D+ + +++ + C +CP Sbjct: 147 EAVRDKNKNQAQMEALKSLRHN----FDLDSVHNLSGFD---RRLVCVPKFC-PRECPGK 198 Query: 177 KDCFVVKARKKAMDADVV--VVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIA 234 C K + D+ + NH+ LAD + + +G+ L+ + ++ DEAH+LP+ A Sbjct: 199 AGCRYQKHLDISRKEDIFLQICNHNYLLADAMHRANGYRPLLADYRALVVDEAHKLPEAA 258 Query: 235 SQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN 294 SQ +G+S+ + ++A + + D ++L + L + R E Sbjct: 259 SQMYGRSIGREDVQEIA--YFLVREHKGTDGKRLLEGVSALQMEIRKHRKDGIED--MAG 314 Query: 295 LRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ 354 P A + + L+L + + F R + ++ Sbjct: 315 KESFYFPPGAGTALAQMQERLQLMIKRLAGN-----IPYWTFRRLEEMEELFGWFLKNDK 369 Query: 355 PGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 + + + H T + + + I TS TL + G+ Sbjct: 370 RYILFLQQDSRGHLTFMAVNREIPKYLDTTLWSQGFPAILTSGTLKAGNGFARTRQMTGL 429 Query: 415 EQAESLL---LPSPFDYSRQALLCVLRNLPQT--NQPGSARQLAAMLRPIIEANNGRCFM 469 E+ + SPF Y LL + +L A QLA +R ++ + G + Sbjct: 430 EKETGVRECVAESPFCYQENCLLYIPEHLKPRKKGSREEAEQLAGQIRDLVCSTYGHTLV 489 Query: 470 LCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRG 529 L TS+ +M ++ + R + P++ S+ + + +F NA+L A S WEGVD G Sbjct: 490 LFTSYTLMGNVQQLLRDQIPFPMVQVWRNSQEE-IARFKKMENAVLFAAGSCWEGVDFPG 548 Query: 530 DTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDAD 589 D +S +II KLPF+ P DP+ +A+ E R + +PD L+QG GR IR Sbjct: 549 DMVSSLIIVKLPFSVP-DPIHEAQREQYRSL-KSYIQTIVVPDMQKKLRQGFGRAIRTEQ 606 Query: 590 DRGVLVICDNRLVMR-PYGATFLASLPPAPRTRDIARAVRFL 630 D V+ I D+R + Y + L +LP I F+ Sbjct: 607 DTCVVSILDHRATKKGRYRSDVLEALPKCQMAERIEEVEDFI 648 >UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF4745 Length = 1746 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 175/665 (26%), Positives = 272/665 (40%), Gaps = 71/665 (10%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGSK 73 +PRE Q++MA AV + G L VEA TGTGK+ AYL PA+ R + V+I+T +K Sbjct: 331 LRPREAQQEMARAVADVFDHGGRLAVEAPTGTGKSLAYLLPAIGRASRPGQPVVIATATK 390 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 LQ QL L ++G +NY+C LE P+ + + + Sbjct: 391 TLQGQLRVEATRLHDDGL-LGAPFRQIQGVANYVCTRELEDALSDRESSPLALAVALRAI 449 Query: 134 RSWSNQTVDGDISTCVSVAED--SQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDA 191 + T D + + ++ + + C + C + C + + A Sbjct: 450 AASPTGTWDDVTDDVIRRRDTRYARTRARLRTNAGGCDRTKCVWAQVCPMTQQLNGLDKA 509 Query: 192 DVVVVNHHLFLADMVVKESGFGELIPEADV-MIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 VV +H +A V + G+++ E+ ++FDEAH L D + + + + + +L L Sbjct: 510 PGVVSVNHALIASWVKTDHAPGDVLTESRADLVFDEAHGLEDSLTAAWTERVDALELDIL 569 Query: 251 AKD--------------------ITIAYRTELKDTQQLQKCADRLAQSAQDFR------- 283 T A + + Q++ LAQ+ + + Sbjct: 570 VNSLSPRSKLMRGIRSRAGTDTSFTEASQAITTSSTQVRSSGAELAQAIETYLHEYAGKS 629 Query: 284 ----LQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERA 339 L+ G R R L R +L+ L SL +A R Sbjct: 630 DSVVLRTGVVNSRPEFRVLRQAATAVRYWLI---QLAKAVTALSQSLAGVNGTGSARRRL 686 Query: 340 TLYRTRLKRLKEINQ-----PGYSYWY------ECTSRHFTLALTPLSVADKFKELMAQK 388 Y RL E+ P W E +T P+ V +F++L+ + Sbjct: 687 RGYSERLDAAIELLDTMRELPDGHLWVYRLAAEEDDPAAWTYERIPVHVFPEFEQLVVDR 746 Query: 389 PGSWIFTSATLSVNDDLHHFTSRLGI--------EQAESLLLPSPFDYSRQALLCVLRNL 440 S + SATL+V SRLGI L LPSPFDYS+Q+L+ + +L Sbjct: 747 THSTVLCSATLTVQHRFDFIASRLGIGIAADPDGAGFRGLRLPSPFDYSKQSLVILTNHL 806 Query: 441 PQT---NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR------ATMTLP 491 P N+ ++AA + + G+ L + M +A R A + Sbjct: 807 PVPIPVNEREFCEEMAADQTGFLSLSGGKTLTLFAARTRMEAVAAGVRIRAAELAQRGVE 866 Query: 492 VLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLK 551 +L+QG+ + Q+ ++F +L S+WEG D G+TLS + I+K P+ PDDPL+ Sbjct: 867 LLVQGDQGRSQIQRRFRDEPGTVLYGLRSYWEGFDAPGETLSYLFIEKPPYPHPDDPLIS 926 Query: 552 ARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGAT-F 610 AR RG DPF + LP + QG GRLIR DRG ++CD RL Sbjct: 927 ARQRAIADRGDDPFLDYVLPMTAMQFAQGFGRLIRSETDRGAALVCDRRLHSPTQAQRVI 986 Query: 611 LASLP 615 L SLP Sbjct: 987 LDSLP 991 >UniRef50_A6NXQ7 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A6NXQ7_9BACE Length = 684 Score = 397 bits (1019), Expect = e-109, Method: Composition-based stats. Identities = 164/664 (24%), Positives = 274/664 (41%), Gaps = 68/664 (10%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 G + RE Q+ M+ + A+ Q +EAG G GK++ YL P L R K VII+T + Sbjct: 44 GLEMREGQQDMSFEIVDALINDQHFAIEAGVGIGKSFGYLVPVLLYSKRMNKPVIIATST 103 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 ALQ+QL+ RD+ TV L +V L KG+++YLC +R ++ P L + I Sbjct: 104 IALQEQLW-RDVHTVMPLLGLNRDVILAKGQTHYLCNKRADEYMCDPKADPPDALKEGIK 162 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 + + V + Q + + NC + K C K R D Sbjct: 163 QGYEERKVFPEVLPQGVWDKVNVQRFSM-----KNCGSCE----KKCKYYKVRAALKFTD 213 Query: 193 VVVVNHHLFLAD--MVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 VV+ + FL M ++ G + AD+++ DEAH L D + L + Sbjct: 214 GVVLCNQDFLTQHLMKLRRGQDGLINAAADLLVVDEAHNLDDKVRSATTERFGQGMLFGM 273 Query: 251 AKDITIAYRTELKDTQQLQK-----------------CADRLAQSAQDFRLQLGEPGYRG 293 K R+ + + +K ++ ++ QD R + Sbjct: 274 IKSAFYELRSSDQSSVSGEKREAESAIIAFYNCLKAQVQKQINEAEQDMRYA-DRFFFDN 332 Query: 294 NLRELLANPQIQRAFLLLDDTLELCYDVA---KLSLGRSALLDAAFERATLYRTRLKRLK 350 N + ++ A L ++++ + S S LDA E + R+ Sbjct: 333 NGSAIELLTEMNAAIHNLSSSIQIYSSMDFRNNRSFAASDDLDAVSESLSELLDRI---- 388 Query: 351 EINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLS------VNDD 404 W E + L P + + L I TSATL+ + + Sbjct: 389 ----DDMLIWIEQHGSNTELVYCPKNTKEIVSRLYFNGDERTILTSATLTNATSGSLEEQ 444 Query: 405 LHHFTSRLGIEQAESLLL----PSPFDYSRQALLCVLRNLPQTNQPG--SARQLAAMLRP 458 +F S G + L PSP+ Y A++ +LP + + L Sbjct: 445 YSYFISNTGFPAGDRGCLSEPKPSPYPYDEHAMIYYCDDLPHPTREHDAFIEKGVERLLE 504 Query: 459 IIEANNGRCFMLCTSHAMMRDLAEQFRAT-MTLPVLLQGETSKG-QLLQQFVSAGNALLV 516 I+ +NG+ +L T+ M ++ + +L+Q S ++L +F N++L+ Sbjct: 505 ILSISNGKALVLFTAKTDMEEVYSILSEKNLPYKILMQQPGSSQDKVLNEFKEDTNSVLL 564 Query: 517 ATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVIT 576 T ++WEG+ + G +LS VII +LPF P DP+++ + D +V++P+ +I Sbjct: 565 GTGAYWEGISIEGKSLSNVIIFRLPFPVP-DPIIEYKC----SVAKDALMDVRVPEMIIK 619 Query: 577 LKQGVGRLIRDADDRGVLVICDNRL---VMRPYGATFLASLPPAPRTRDIARAVRFLA-I 632 LKQG+GRLIR+ D G++ I D RL Y SLP RT + +F + Sbjct: 620 LKQGIGRLIRNFTDTGIVCIIDRRLRDEPSERYHDITWDSLPIKNRTSSLGELRKFYEGL 679 Query: 633 PSSR 636 PS++ Sbjct: 680 PSAK 683 >UniRef50_UPI0001C355EC helicase c2 n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C355EC Length = 765 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 151/653 (23%), Positives = 278/653 (42%), Gaps = 53/653 (8%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL------RAKKKVIIST 70 G R+ Q+++A+++ +A+++ + + EA GTGKT+AY+ ++K +IST Sbjct: 118 GMAKRKSQKELALSMLRALQENKLALCEAEVGTGKTHAYILAVTIHNLFSQSKTPTMIST 177 Query: 71 GSKALQDQLYSRDLPTVSKAL------KYTGNVALLKGRSNYLCLERLE--QQALAGGDL 122 + ALQ+ + +P +S+ L + + KG+S+++C RL+ + ++ + Sbjct: 178 STIALQEAITKEYIPQISRILLEHRIIDKPLSFVVRKGKSHFVCDSRLKTYESSIRNQNR 237 Query: 123 PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC-FV 181 P L W Q D+ + + CP C F Sbjct: 238 PEDQGLLAQLGELWREQEHYLDLDGFPLTPY---VKERINVSQ---CSEFCPHSSYCRFA 291 Query: 182 VKARKKAMDA-DVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 +R+ ++ D + NH+ LAD+V + G +L+P ++ +FDEAH+L D A Q + Sbjct: 292 SFSRRWLSESYDFQISNHNYILADVVNRREGKKKLLPYYNIAVFDEAHKLIDAARQIYCT 351 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 LS ++ L I+ + +Q+ + L++ + G + N E ++ Sbjct: 352 RLSENEIPKLIHLISPERFVDKSSQRQMMELCTGLSEKNTRLFQKTGGAFIQSNQMENIS 411 Query: 301 N--PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFE----RATLYRTRLKRLKEINQ 354 + + L + D + + + ++ + +D+ R T + ++ Sbjct: 412 RTIEEDRSTRLWIRDLIGMLEKLGRIFVTVK--MDSCGRVKTIRNTAQSIEDRLNVFLSA 469 Query: 355 PGYSYWYE-CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG 413 W E S P + + I TS T+SV + HF G Sbjct: 470 KQNISWIEKSDSGGLEFCSLPRELERILYHDLWHTGVHSIITSGTISVGGNFDHFKRMTG 529 Query: 414 IE-----QAESLLLP--SPFDYSRQALLCVLRNLPQTN--QPGSARQLAAMLRPIIEANN 464 I+ + + SPF+YS+ A+L + LP + ++ + +I A Sbjct: 530 IDLLQPQNRRVMEVSKLSPFNYSQNAILYIPEELPFPDIHDEKYIEAISREIIHLICATF 589 Query: 465 GRCFMLCTSHAMMRDLAEQFRATMT-LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWE 523 G +L +S+ +M + + + + P+ + + + ++++F +GN +L A+ S E Sbjct: 590 GHTLILFSSYWLMERIFYEVKQEIQSFPLFIM-KRGRMDMIEKFRRSGNGVLFASDSAGE 648 Query: 524 GVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQ----LPDAVITLKQ 579 G+D+ GD LS VII KLPF P P+L+ D F + P +I L+Q Sbjct: 649 GIDLPGDILSSVIIVKLPFPVPS-PILE-----YERTKYDDFSQYVKEIITPGMIIKLRQ 702 Query: 580 GVGRLIRDADDRGVLVICDNRL-VMRPYGATFLASLPPAPRTRDIARAVRFLA 631 GR IR D V I D+R+ + Y L +LP P T I RF+A Sbjct: 703 WFGRGIRRETDTAVFSILDSRVGIHGRYRDDVLKALPDMPVTGRIEEIRRFIA 755 >UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C0WTL9_LACBU Length = 945 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 165/693 (23%), Positives = 269/693 (38%), Gaps = 84/693 (12%) Query: 16 PGFKPREPQRQMAVAVTQAIEKGQP-----LVVEAGTGTGKTYAYLAP---ALRAKKKVI 67 P + R Q +M + LV+EA TG GK+ Y P A+K V+ Sbjct: 257 PHLESRIEQNKMMNMIYNNYASDGHHPAKPLVIEAPTGIGKSLGYSLPFSYLASAQKPVV 316 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 IST + LQ QL ++ LP ++++L + N +LKG S+Y+ L + + L D VQ Sbjct: 317 ISTATTYLQFQLQNQTLPLLNQSLPFKINSVILKGASHYIDLNKF-RHLLFVADSSVQTA 375 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 + W T GD+ E + + + L ++ P Y + F+ KK Sbjct: 376 FIKAQILVWLTMTTTGDLDELHLNVEQTPFVWTIQHSGVKWLDANSPFYDEDFLRYNLKK 435 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 A +AD ++VNH L K F P ++ DE Q + A + + ++ + Sbjct: 436 AQNADFIIVNHSYLL-----KNWQFFSGFPVKPYLLIDETQQFAETAIRNNQKQINPLTV 490 Query: 248 L--------DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELL 299 + D+ + + R L AD L +S + L + +R +++ Sbjct: 491 MSAVNRVRGDIQEGHYKSARDAFSGNSVLNNSADDLDESLNQIKSLLKQLTHRL-YSQMI 549 Query: 300 ANPQIQRAF-------------LLLDDTLELCYDVAKLSLGRSALL-----------DAA 335 AN Q+ + ++++ E + LL DA Sbjct: 550 ANQQLHKNASFFVRLIPISDLKAIINENRETITRLQDKQSEVEDLLIRLNSEIDHSTDAF 609 Query: 336 FERA-----------TLYRTRLKRLKEINQPGY------SYWYECTS----RHFTLALTP 374 R + +L L W FT+ Sbjct: 610 TNRDYSSIYDFYEDFNEFAEKLTFLLSTIDMDESAINQNVVWVTVNHVKDINSFTINQGI 669 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPSPFDYSRQA 432 L D + FT AT+ + + LGI++ A L S FD QA Sbjct: 670 LKTEDYLNHRIYASFEPPTFTGATIFSSRRSQFIFNLLGIDRKAASVRRLQSDFDPKNQA 729 Query: 433 LLCVLRNLPQ----TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT- 487 + ++ + TN +Q+A + I +A+ + +L S ++ + Sbjct: 730 RIYLIDKQSREHFITNSDDYLQQVAQSIEKIYQASPRQTLVLFNSLKAIKKTHQFLSKDG 789 Query: 488 --MTLPVLLQGETSKG-QLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTS 544 T VL QG +L +QF+ A+L+ ++FWEGVD L +II +LPF + Sbjct: 790 FTATHLVLAQGVNGTAARLSKQFIHNEPAILLGANTFWEGVDFPAHLLENLIIAQLPFDT 849 Query: 545 PDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMR 604 P+DP A R +G +PF + LP A + L+QG+GRL+R D G + + D RL + Sbjct: 850 PEDPYNHALYSVERSKGKNPFYSLALPKATLRLRQGMGRLLRTKADYGTIFVLDPRLTTK 909 Query: 605 PYGATFLASL----PPAPRTRD--IARAVRFLA 631 YG T L +L P D I V+F Sbjct: 910 RYGQTILTNLKNEIPVMTGQLDDCINDMVKFFE 942 >UniRef50_A6TUM0 Helicase c2 n=3 Tax=Clostridiales RepID=A6TUM0_ALKMQ Length = 657 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 165/637 (25%), Positives = 288/637 (45%), Gaps = 50/637 (7%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR----AKKKVIISTGS 72 G++ RE Q A + A+ + + EAG GTGKT+AYL A+ + K V+I+ S Sbjct: 37 GYEVREEQIFTAFQLADAVCNKKVHLAEAGLGTGKTFAYLLTAIAYARFSGKPVVIACAS 96 Query: 73 KALQDQLY--SRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 ALQ+QL D+ T+S L + + K Y+C R+++ + + ++ Sbjct: 97 TALQEQLAGPKGDIQTLSDILGLEIDARMAKDPRQYICDARVDESRGLFTEKSNAMSNE- 155 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND-NCLGSDCPMYKDCFVVKARKKAM 189 + W +T G+ S V + + W + +C C C +VKAR+ Sbjct: 156 --INQWLAKTNRGERSEMPLVPD--RVWKQIGWDESMSCD--MCSSRGFCKLVKAREHYR 209 Query: 190 DA-DVVVVNHHLFLADMVVKES----GFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 A D+++ +H +F D+ ++ G ++P +IFDE H++ A+ G+ + Sbjct: 210 PARDLIIADHEVFFDDLWTRDEQIDGGKSPILPSYSAVIFDEGHKVMLPAAMRAGKQIIK 269 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQL------GEPGYRGNLREL 298 + ++ ++ L A L Q++ DF ++L EP R LR Sbjct: 270 EDIDNII----LSLEEIQGARDSLISIAVDLEQTSSDFFIKLNRCVIADEPSDRLALR-- 323 Query: 299 LANPQIQRAFLLLDDTLELCYDVAKLSLGRSA-----LLDAAFERATLYRTRLKRLKEIN 353 + + + A D L +++ + LL + L R Sbjct: 324 VDDKLFKAADTFYKDLDRLLFEIQVEQELYTESLPASLLHTYETQIERSMMALDRFCRNK 383 Query: 354 QPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG 413 W + F + P ++ + QK +FTSATLS D +FT LG Sbjct: 384 SRDVITWVDQMDGSF--WVVPRELSKMLDIHLFQKGLPVVFTSATLSNEGDFSYFTRTLG 441 Query: 414 IEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQ----LAAMLRPIIEANNGRCFM 469 +++ + SPFD Q V+ +LPQ + L +++ N G + Sbjct: 442 LKKTSCSTVESPFDIEEQ----VVVHLPQPSSNSHEDIGFSLGIEGLVSLLKLNGGGALV 497 Query: 470 LCTSHAMMRDLAEQFRA-TMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 L +S +R + + F+ + VL + + +G L+++F +++L+ T SFWEG+D+ Sbjct: 498 LTSSLDEVRKIRKGFKDYQLPFEVLWEDKGERGYLVRKFREEVSSVLIGT-SFWEGIDIP 556 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 G+ LSLV++ +LPF S DPL++ + E+ + G DP V P+ + LKQG GRLIR Sbjct: 557 GEALSLVVVWQLPFPSL-DPLIEVQREEAKKEGLDPKVTVDYPEMGLKLKQGCGRLIRTK 615 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIAR 625 DDRG +VI ++ ++ P+ + +LPP + R + Sbjct: 616 DDRGAIVIMES-IIGEPWEEVVMGALPPGAKIRAVED 651 >UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, putative n=11 Tax=Lactobacillales RepID=A5VK04_LACRD Length = 954 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 161/665 (24%), Positives = 280/665 (42%), Gaps = 74/665 (11%) Query: 18 FKPREPQRQMAVAVTQAIEKGQP--LVVEAGTGTGKTYAYLAP---ALRAKKKVIISTGS 72 + R Q +M ++ +P ++VEAGTG GKT YL P KK+++ST + Sbjct: 267 LRLRPVQAKMMNSIYNNYTHDEPKNMIVEAGTGVGKTLGYLFPLSYVAYPDKKIVVSTAT 326 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP-VQILSDVI 131 LQ Q+ + ++K L + N ++KG ++Y+ + R D VQ+L I Sbjct: 327 NILQQQIIDTSIAQLNKVLPFKMNSVIIKGNAHYIDIARFVHSLSVIEDSKLVQLLKAKI 386 Query: 132 LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDA 191 L+ W T GD+ ++ S + + L Y D F+V+ K+ A Sbjct: 387 LV--WLLSTQSGDLDELNLNSQQSPYFTEIRHQGIRSLNPVNAFYHDDFLVRREKRLHQA 444 Query: 192 DVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLA 251 D+++ NH +A +E G G P ++ DEA L + + ++ + ++L Sbjct: 445 DIIITNHAYLVAH--AQELGDGTRRP---YLVIDEAQHLSESILKRSRRTFNFQKLRTAV 499 Query: 252 K---------------DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE----PGYR 292 DI + + L+ + + ++ F+ L Sbjct: 500 HVMSGLVNNGNDRNLTDIFAEQALGSYNVELLRGDLNAVEEAVDLFQQALYRQYMASATS 559 Query: 293 GNLRELLANPQIQRAFLLLDDT-------LELCYDVAKLSL-GRSALLDAAFERA----- 339 EL+ P + L D LE +L S L + +R Sbjct: 560 NPDNELIEQPLRNDQVMSLLDISGPVMMKLEQALSSVQLHFSALSHLFSSQPDRWLLSDR 619 Query: 340 ---TLYRTRLKRLKEINQ-------------PGYSYWYECTSRH----FTLALTPLSVAD 379 + ++++L +L E +Q ++W L+ L Sbjct: 620 YLMSQFQSQLAKLIEADQTLNEFNETLQQQGEAAAFWITIRQSSEQSALQLSGGLLEATH 679 Query: 380 KFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL--LLPSPFDYSRQALLCVL 437 + + +F ATL + + +L +E+ +L SP++Y + A L + Sbjct: 680 YLTKNVYPYFAQPLFVGATLFTSPRSPYLYHQLDLERNNTLTRRFASPYNYKQNAKLLIA 739 Query: 438 RNLPQT---NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLP 491 + P N + L+ + + + + + +L S M+ + Q R T Sbjct: 740 EDAPVPSAQNNSDYIKYLSDTIYQLTKNADYQTMILFNSLVMIEQIYSQLRETDLFDQRD 799 Query: 492 VLLQGETS-KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL 550 +L QG T + ++L+QF N++L+ SSFWEG+D+ L L+II +LPF SPD+ + Sbjct: 800 ILAQGITGNRDKILKQFSGGKNSILLGASSFWEGIDLPESALELLIITRLPFDSPDEIMN 859 Query: 551 KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATF 610 +A + + +G +PF +LP A + L+QG+GRL+R DD GV V+ D RL R YG T Sbjct: 860 RAHNKLLQQQGKNPFYHSELPKATMRLRQGIGRLLRTEDDHGVAVVLDPRLQTRRYGKTI 919 Query: 611 LASLP 615 L+SLP Sbjct: 920 LSSLP 924 >UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03S23_LACBA Length = 948 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 154/668 (23%), Positives = 268/668 (40%), Gaps = 76/668 (11%) Query: 16 PGFKPREPQRQMAVAVTQAIEKG-----QPLVVEAGTGTGKTYAYLAPAL---RAKKKVI 67 + R Q +M + + + ++VEA TG GK+ YL P + + V+ Sbjct: 253 ENLEWRPEQAKMMNYIYNNYAEADRHPVKHMIVEAPTGIGKSLGYLLPMAYLGQTGRPVV 312 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 +ST + LQ+QL + +P +++ + +T N L+KG +YL L+R L + Q Sbjct: 313 VSTATTLLQEQLLDQTIPLLNQIVPFTVNAVLVKGSRHYLDLQRFA-TTLNVAETSKQTQ 371 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 + L W T GD+ + + + + D P Y D F+ + + Sbjct: 372 LLKLRLLVWLTMTTTGDLDELHLATYRAPYFQEIVHEG--AVTVDNPFYDDDFIRRRDHR 429 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 A V++VNH + + ++ DEA L + + + QL Sbjct: 430 MAQAQVIIVNHAYLSEHALALGEQLQQ-----PYLVIDEAQHLTESTLKQRRTQVKFAQL 484 Query: 248 L--------DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLR--- 296 L D+ ++I + Q RL ++Q QL LR Sbjct: 485 LNELHHIQRDINREIGPSLLRLFAADTQATLTLHRLLSASQTLETQLTTLVDHLFLRFLA 544 Query: 297 ----------------------ELLANPQIQRAFLLLDDTLELCYDV--------AKLSL 326 E+ + I RA + DD L + A+ + Sbjct: 545 NKRLNNHNQVIEELVSAQALTEEIDRSRTIDRATMATDDLLAGLNALRQRYDQQQAQFTS 604 Query: 327 GRSALLDAAFERATLYRTRLKRLKEI------NQPGYSYWYEC----TSRHFTLALTPLS 376 L + R L+ ++ +L EI P +W LA L+ Sbjct: 605 AERYLFEQVNTRVHLFDDQMGQLLEILRQVVDQAPASLFWLTMNHVGDRTSLQLASGLLA 664 Query: 377 VADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL--LLPSPFDYSRQALL 434 + + + T ATL + + + +++ +++ + S FDY +QA L Sbjct: 665 TEGFLSQHLYAGFQPVLLTGATLFSSGRSQYVLDQFDLQREQTVTHRMRSSFDYGKQAQL 724 Query: 435 CVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF---RATM 488 + + P ++ L+A + I A N + +L S +++ + +Q Sbjct: 725 LMADSGPNLSRVAPADYVTYLSAAISQIAGAVNKQTLILFNSLSVIEQVYQQLVTQPEFA 784 Query: 489 TLPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 + QG S+ ++ ++F ++ A+L+ +SFWEG+D+ + L L+I+ +LPF SPD Sbjct: 785 RRDIFAQGVSGSRERITKRFATSHGAILLGAASFWEGIDLPSEQLELLIVTRLPFDSPDR 844 Query: 548 PLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 +KA G +PF LP A + L+QG+GRLIR D G +VI D RLV R YG Sbjct: 845 VFVKANYARLEAAGKNPFYNAALPAATLKLRQGIGRLIRTPHDYGAVVILDQRLVERQYG 904 Query: 608 ATFLASLP 615 + L +LP Sbjct: 905 QSILRALP 912 >UniRef50_Q67KS2 ATP-dependent helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67KS2_SYMTH Length = 656 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 183/637 (28%), Positives = 289/637 (45%), Gaps = 43/637 (6%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 GF+ RE Q A + +A+ +G L+ EAG GTGKT+AYL PA+ + V++++ S Sbjct: 38 GFEVREEQIYTAFRIARALTEGSTLLAEAGPGTGKTFAYLLPAVCHARMRGRPVVVASAS 97 Query: 73 KALQDQLY--SRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 L+ QL D+ T+S+ L +V + ++Y+C ++E G+ P + S++ Sbjct: 98 SVLKAQLTGPDGDIQTLSRLLNLDIDVRVAGNPADYVCEMKVEAGDFGSGEEP-EGWSEL 156 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND-NCLGSDCPMYKDC-FVVKARKKA 188 I W+ +T G S V +D W LV+ NC CP C V R+ Sbjct: 157 I---HWARRTGTGARSEVPGVPDD--LWELVSWDPSLNCDT--CPRRGHCLMVAARRQHR 209 Query: 189 MDADVVVVNHHLFLADMVVK----ESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 AD+VV +H LF D++ + E G ++P +IFDE H P+ + G SLS Sbjct: 210 AAADLVVCDHRLFAQDLLTRNDLLEGGMLPILPSYSAVIFDEGHHFPETWQRAQGWSLSQ 269 Query: 245 RQLLDLAKDI-TIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELL--AN 301 R+L + + R ++ + A A D + GE + ELL A Sbjct: 270 RRLRRTLERLEYWHAREQVAWRLEAALVAADSFMQALDVHTRPGEGKRDVDRSELLLKAA 329 Query: 302 PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 ++ +A LL L + + L A R R L+ + +P W Sbjct: 330 ARLDQALDLLQTEL-VTEEAMSEGQSSETELQAYQNRIDELRAALRLFR---RPESVVWR 385 Query: 362 ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL 421 E L + P F + + +F+SATL + LG+ + + Sbjct: 386 EGDE----LWVVPRRPKPLFGGDLLKPGTPVVFSSATLEP----DYQARVLGLSRFDQSR 437 Query: 422 LPSPFDYSRQALLCVLRN----LPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 + PFD RQ+L+ + + + + + ++ A GR +L S A + Sbjct: 438 VGVPFDLGRQSLVYLPPDEGSGMNAAGPDAAVDAVVDEAVRVLHATGGRALILVRSLAEV 497 Query: 478 RDLAEQFRAT-MTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 R + A + PV+ +G+ +G L++F + +++LV FWEGVDVRG+ LS VI Sbjct: 498 RRWRQALAAHHLPWPVIYEGDGDRGAQLERFRAEVDSVLVGAG-FWEGVDVRGEALSCVI 556 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 + LPF DPL++ R + G DPF V LP+ +I LKQG+GRLIR A+DRGV+ + Sbjct: 557 LPYLPFPE-HDPLIRERRGQAQAAGQDPFRAVDLPEMLIKLKQGMGRLIRTAEDRGVIAL 615 Query: 597 CDNRLVMRPYGATFLASLPP-APRTRDIARAVRFLAI 632 D + + P A R D+A FLA Sbjct: 616 LDRSYRGADWAGAVEEAFPEGARRVTDLAEVKAFLAG 652 >UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E9B0_9LACO Length = 968 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 151/682 (22%), Positives = 252/682 (36%), Gaps = 84/682 (12%) Query: 21 REPQRQMAVAVTQAIE-KGQPLVVEAGTGTGKTYAYLAPALRA---KKKVIISTGSKALQ 76 R+ Q +M + + + L+V+A TG GKT YL P ++ST + AL Sbjct: 289 RKEQAKMMNDIYEHFNGDEKMLLVQAPTGMGKTLGYLVPGAYQAQEGASTVVSTSTTALL 348 Query: 77 DQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSW 136 DQ+ +P + K + + ++KG +Y+ LE+ + ++L IL SW Sbjct: 349 DQIVKESVPLLKKIVPFDFTYEVMKGSGHYIDLEKFSHTLKIPMNNQTRLLQMRIL--SW 406 Query: 137 SNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVV 196 QT GD+ +Q + ++ L Y FV + AD V Sbjct: 407 LWQTTTGDMDELRLTTYRAQLFKMIKHAGVGSLSDKSAFYGLDFVRLRDVRVKFADFVFT 466 Query: 197 NHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ---------------- 240 NH + E+ + +I DEA +P +A + G Sbjct: 467 NHSYLVRHA-------EEIGKKKANLILDEAQNIPSVAMEQGGSVFDFDLVKIYSDTLLV 519 Query: 241 ------SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN 294 S S L+ YRT L++ Q + + + + R + G + Sbjct: 520 SMESRISFSFEGLIRQHFLTKNEYRTILRNIQIIDHSVPFIREKFWE-RYVRTKGGSKKE 578 Query: 295 LRELLANPQIQRAFLLLDDTL---------ELCYDVAKLSLGRSALLDA----------- 334 E L +P L + + EL + ++ LDA Sbjct: 579 FVETLLSPNKVLGLLKENFAIFLKTTKAYTELLGQMTEMKQRFFRALDAGTLDHEAVNLL 638 Query: 335 ---------AFERATLYRTRLKRLKEINQPGYSYWYECTSR----HFTLALTPLSVADKF 381 E + E W + + H L + L Sbjct: 639 TDWFIDCEKLVESMEKWHLLEFSELEKMDETTLVWMKHSPNNPKTHLRLCFSRLEAGKYL 698 Query: 382 KELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-AESLLLPSPFDYSRQALLCVLRNL 440 +E + + A L + +L ++ + S FDY+ QA + Sbjct: 699 EERVYGYFKHIVMCGALLFTKKTEDYTKDQLRLDDDVLTKRYQSEFDYAHQARAVFATDS 758 Query: 441 PQTNQ----PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT---MTLPVL 493 P + L L IIE + + +L S + + +L Sbjct: 759 PDLSSMLSKAEYHAYLTDALSDIIEKTSLQTLVLFNSLEDIEAVYNGLSIRGLNKKREIL 818 Query: 494 LQGETSK-GQLLQQFV-SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLK 551 QG +L ++FV ++ ++L+ SFWEG+D+ D L L++I +LPF SPD + K Sbjct: 819 AQGVNGTPEKLKKRFVLTSSKSILLGAGSFWEGIDLPEDKLELLVITRLPFQSPDSLINK 878 Query: 552 ARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFL 611 R + + +G +PF V LP+A + +QG GRLIR DD G+L + D+R+V + Y F Sbjct: 879 VRYRNVQAKGHNPFSAVSLPEAALKFRQGFGRLIRTKDDHGILAVLDSRIVNKRYAHEFT 938 Query: 612 ASLPPAPRT-----RDIARAVR 628 +LP R +DI +R Sbjct: 939 DTLPKDLRIDRVEMKDIPEIIR 960 >UniRef50_A1WP29 Helicase c2 n=2 Tax=cellular organisms RepID=A1WP29_VEREI Length = 664 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 167/643 (25%), Positives = 258/643 (40%), Gaps = 48/643 (7%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKKK 65 L +PGF R Q+ M + + V+EA TG GK+ YL A+ K Sbjct: 26 ALTSVMPGFVARAQQKTMISRTLGLMTRQALGVIEAPTGIGKSMGYLIAGIASAVTEDKV 85 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKY----TGNVALLKGRSNYLCLERLE------QQ 115 +++ST + +LQDQL S+DLP +A +V + KGR + C ++ Q Sbjct: 86 LVVSTATASLQDQLASKDLPLALRAFALAGVCGIDVVVAKGRERHACPMKMHAFAGGTQD 145 Query: 116 ALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 A GD + V L W G V +AW + +T +C G CP Sbjct: 146 LFAAGDDHTALTQAVDL---WRQGQWAGVRDDLP-VRLHQRAWMRIANTAASCPGQKCPE 201 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMV-VKESGFGELIPEADVMIFDEAHQLPDIA 234 + C + A V++ NH L+ + V S F + + +FDEAH L D Sbjct: 202 FDLCPYYATQAALKTARVIITNHDYLLSTLSNVPHSVFSDG--HKCLFVFDEAHHLSDKL 259 Query: 235 SQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADR---LAQSAQDFRLQLGEPGY 291 F + L L ++ A L A+R + ++ +D L + G Sbjct: 260 LNAFARRL---DLAAFPSEVIEAIAQLCPGMVGLDFAAERVRGIWRACEDAALTMLGDGS 316 Query: 292 RGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKE 351 + PQ +R L L L K +A A L +R+ +L Sbjct: 317 QHRFTLNEVPPQFRRLLLDLKAQLSGMRATLKEVKESNARFRNKAV-AMLADSRIGQLSG 375 Query: 352 INQPGY------------SYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATL 399 Q + W L +P A K ++ + + + TSATL Sbjct: 376 DVQEAIDCIEEFTGDDLVARWLARGRNSIDLNCSPFDGARKARKHLWPVVKTGLLTSATL 435 Query: 400 SVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRP 458 + LG+ + +L L SPFDY R A L V R + + P +R +AA L+ Sbjct: 436 TTLGSFEPMRIALGLPAETSTLKLDSPFDYGR-ARLIVPRLCVEASDPAHSRMVAAFLKD 494 Query: 459 --IIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV----SAGN 512 + A + + TS +M D +LLQG+ +L++ + Sbjct: 495 HALGAAKHRGVLVYFTSKKLMLDCMAAIPTAQRGCILLQGQWQPWAMLEEHKRRIDAGVR 554 Query: 513 ALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPD 572 +++ S EGVD+ G+ + VI+ +LPF PDDP+L E R +G DPF + +P Sbjct: 555 SIIFGLDSIGEGVDLPGEYCTRVIMTRLPFPCPDDPVLCTHAEYLRSKGKDPFHILTMPK 614 Query: 573 AVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 + Q GRL+R D G + D RL + YGA + S P Sbjct: 615 VGLKFAQVAGRLMRREQDWGEFYVLDKRLRSKRYGAQIVKSTP 657 >UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_LACRG Length = 933 Score = 382 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 161/668 (24%), Positives = 262/668 (39%), Gaps = 79/668 (11%) Query: 16 PGFKPREPQRQMAVAV-TQAIEKGQPLVVEAGTGTGKTYAYLAPALR---AKKKVIISTG 71 P ++ R+ Q +M A+ T A + PL +EAGTG GKT YL P ++K++++T Sbjct: 248 PRYRFRKAQAKMMDAIFTHAQKTEIPLFIEAGTGLGKTLGYLLPYAYLATPEQKLVVATS 307 Query: 72 SKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVI 131 + LQ QL ++ +P + L T LK +YL L + +L Q + Sbjct: 308 TLVLQTQLITQAIPELDALLGRTLPTVELKSPQHYLDLNKFA-ASLHQEGPTRQTQLLQM 366 Query: 132 LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDA 191 L W QT GD+ + + + + D P Y F + + K DA Sbjct: 367 KLLVWLTQTTTGDLDELHLTTYRAPLFAEIRHSGDVGTPFINPFYTFDFYRRLQAKLADA 426 Query: 192 DVVVVNHHLFLADMVVKESGFGELIP-EADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 VVV NH S + +P + ++ DEA D + F + ++ L Sbjct: 427 VVVVTNHAFL--------SRHADTLPFKRPFLVVDEAQHFADNTAAAFARRVALDHLNHQ 478 Query: 251 AKD---------------ITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN- 294 I + L QQL + A + + Q+ + G Sbjct: 479 LHRVWQLSEPDERHSLTAIYQSEPAMLTVLQQLNQQAATAETAVNTLQRQIHRHFFFGKT 538 Query: 295 -----------------LRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALL----- 332 E I+ +L L + D R Sbjct: 539 TAASGFVNLSLDSAAAKWLEQTQTATIKSLIKVL-GRLTVTTDKLTADFNRRPHFFLKSD 597 Query: 333 DAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPL----SVA------DKFK 382 F+ R L +++ Q S + + + L VA D F+ Sbjct: 598 GQQFQALAALRIALADHRQLLQELLSRLPDLIAGQAVIMSVNLRQITDVASLELSWDVFQ 657 Query: 383 -----ELMAQKPGSWIFTSATLSVNDDLHHFTSRLG---IEQAESLLLPSPFDYSRQALL 434 + + + +F ATL+ T++LG + ++ L L SPF Y QA + Sbjct: 658 VGSAVQQLIHHFEAPVFVGATLTAERSFDFLTAQLGYHELPESSFLKLRSPFHYRDQAKV 717 Query: 435 CVLRNLP---QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM--- 488 V + P + A LA + + + N + +L S +++ + ++ Sbjct: 718 LVATDAPHAADVSDDAYADYLAMAIEQLAD-NQYQTIVLFNSLSVIEAVYQRLIHRPIAG 776 Query: 489 TLPVLLQGET-SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 +L QG T S ++ ++F +LL+ +SF+EG+D L +VI+ +LPF +P+ Sbjct: 777 HKELLAQGVTGSAEKIAKRFAVGEQSLLLGAASFFEGIDYPDRLLEIVILTRLPFDAPEA 836 Query: 548 PLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 P+ KAR +L GGDPF E LP A++ L+Q GRLIR DRG +I D R + YG Sbjct: 837 PITKARYRQIQLSGGDPFTEDALPRAILRLRQSFGRLIRTETDRGAFIILDPRFITTAYG 896 Query: 608 ATFLASLP 615 SLP Sbjct: 897 KKMQKSLP 904 >UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lactobacillus salivarius RepID=Q1WU39_LACS1 Length = 929 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 140/671 (20%), Positives = 268/671 (39%), Gaps = 74/671 (11%) Query: 18 FKPREPQRQMAVAVTQAIEKGQ--PLVVEAGTGTGKTYAYLAPALR--AKKKVIISTGSK 73 + R Q +M + + + + + +A TG GKT YL P ++KV+IST + Sbjct: 253 LEWRSSQIKMMDDINNDLNEKKSKIYIYDAATGIGKTLGYLMPIAYKATEEKVVISTATT 312 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 LQ+QL +D+ + + + + N+ LKG +Y+ +++ Q + +L+ Sbjct: 313 TLQNQLVDKDISILKEVIPFNLNIVNLKGSQHYIDIDKFYQSLSIPQSKKATQIQMTLLV 372 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADV 193 W +T GD+ ++ + + L Y F+ + A++ Sbjct: 373 --WLMETSTGDMEELNLLSMQDTIFAQIEHHGIRGLNKKSAFYSVDFLKRQEILRRHANI 430 Query: 194 VVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKD 253 ++ NH L+ + +L V+I DEA L D + +++ Q+ ++ Sbjct: 431 IITNHAYLLSHV-------DKLGGNDTVLIVDEAQHLNDNLLKENRKTIDFDQIKIISDS 483 Query: 254 ITIAYRTELK-DTQQLQKCADRLAQSAQDFRLQLGEPGYRG-NLRELLA---NPQIQRA- 307 + + ++L + L + + + Y NLRE+ N + +A Sbjct: 484 LLVKMESQLSFSFRDLVEINFITKAQYTELIRPIQTIDYEIMNLREIFMTYLNSNMNKAS 543 Query: 308 -----------------------FLLLDDTL---------------------ELCYDVAK 323 F ++ L L D + Sbjct: 544 DVYVEVPIKPLNLIGMIKANLFIFKKIEKALKNLKRLQNKFSQKYSMAIVTGRLGLDEIQ 603 Query: 324 LSLGRSALLDAAFERATLY----RTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVAD 379 L LL+ + RL+ E +Y Y + H L L + Sbjct: 604 LINDYQKLLNLLLSEMKSWSYLDLNRLEDELETEFIWLTYPYRQENGHLRLNFIMLDGEN 663 Query: 380 KFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCVLR 438 + + QK + + A L++ + + +L + Q + + FDYS+Q +L+ Sbjct: 664 FLNDKVYQKFSTVLLVGANLAMKETRGYMFRQLDLNGQVKIKKYDNIFDYSKQTRAYILK 723 Query: 439 NLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT--LPVL 493 + P L+ L I+ +NN + +L S ++ + + + +L Sbjct: 724 DTPDITSISKKEYIEYLSHDLEKILLSNNRQTMILFNSLEIIESVYPKLVKKIGSKREIL 783 Query: 494 LQGETSK-GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKA 552 QG T ++ ++F+ +L+ +FWEG+D+ + L +VI+ +LPF SPD L KA Sbjct: 784 AQGITGSVEKIKKRFMLGEGKILLGAGAFWEGIDLPENNLEMVIVTRLPFQSPDTVLNKA 843 Query: 553 RMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLA 612 R +G + F + LP+A + L+QG GRLIR D+G+ V+ D+R+ + YG F++ Sbjct: 844 RYRKLEKKGINSFYNLALPEATLRLQQGWGRLIRTPKDKGIFVLLDSRIANKNYGEKFIS 903 Query: 613 SLPPAPRTRDI 623 S P + + Sbjct: 904 SFPDGVNLKSL 914 >UniRef50_B6FUD5 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUD5_9CLOT Length = 678 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 151/647 (23%), Positives = 260/647 (40%), Gaps = 59/647 (9%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK------------ 64 G RE Q ++ + + Q + +AG G GKTYAYL + +K Sbjct: 48 GLAVREEQIRLCHEMLDTLLGEQIALCDAGVGIGKTYAYLVACVLLRKYSMLTGRGNPLE 107 Query: 65 --KVIISTGSKALQDQLYSRDLPTVSKAL------KYTGNVALLKGRSNYLCLERLEQQA 116 V++ST S ALQ + + +P +S+ L + + KG+ +++C RLEQ+ Sbjct: 108 QRPVVVSTSSIALQKAILTEYIPFLSRVLLEQGIIQSPLRAVVRKGKEHFVCDNRLEQRI 167 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 A + LL + +D SV S + C +CP Sbjct: 168 EAIRHKQKNAVQKAALLSLRKHYDMD-------SVKNLSGFDRRLVCVPKFC-PRECPGR 219 Query: 177 KDCFVVKARKKAMDADVVV--VNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIA 234 + C + +++ DV + NH+ LAD + G+ L+ + +I DEAH+LP+ A Sbjct: 220 QMCRYQRYLEESRKQDVFIQICNHNYLLADAYHRAEGYKPLLSDYRTLIVDEAHKLPEAA 279 Query: 235 SQYFGQSLSSRQLLDLAKDITIAY-RTELKDTQQLQKCADRLAQSAQDFRLQLG-EPGYR 292 Q FG++L + ++A + + + E K + + D L + R+ G +R Sbjct: 280 RQMFGKNLCMDDIREIAYYLEREHQKEEAKILRTV--MHDALHVVGAEHRIGKGIRETFR 337 Query: 293 GNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEI 352 +++ + +L+ LE KL + E A Sbjct: 338 NTTNSVVS---LWEGVEMLEFLLE------KLERSVPKWIWNRLEEAKDVLECFCS---- 384 Query: 353 NQPGYSYWYECTSRHF-TLALTPLSVADKFKELMAQ--KPGSWIFTSATLSVNDDLHHFT 409 + Y + + L + ++++ + S I TS TL Sbjct: 385 SDEKYVRYLHLDTEQLPVLCAASREIPGLLRKMLWNWEEGMSAILTSGTLKAGTGFLRTR 444 Query: 410 SRLGIEQ---AESLLLPSPFDYSRQALLCVLRNLP--QTNQPGSARQLAAMLRPIIEANN 464 G+E + + SPF Y + LL + + L + A +A + +I + Sbjct: 445 QITGLEGRAGVQEYVAESPFSYEKNCLLYLPKTLDHCRRGSREEAVMVANHIHSLICSTY 504 Query: 465 GRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEG 524 G +L TS+ +M + + R ++ P++ S+ ++L +F + N +L A S WEG Sbjct: 505 GHTLVLFTSYTLMGSVYQILRDSLPFPMVEVWRHSQEEIL-RFKTMENGVLFAAGSCWEG 563 Query: 525 VDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRL 584 VD GD +S +II KLPF P DP+ +A E + +PD L+Q GR Sbjct: 564 VDFPGDMVSSLIIVKLPFAVP-DPISEAEKETYDSL-ETYIQSIIVPDMQKKLRQEFGRA 621 Query: 585 IRDADDRGVLVICDNRLVM-RPYGATFLASLPPAPRTRDIARAVRFL 630 IR D V+ I D R V Y + +LP ++ F+ Sbjct: 622 IRTETDTCVVSILDIRAVKGGKYHEDAMCALPSCRIAEELKEVQDFI 668 >UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38X67_LACSS Length = 944 Score = 365 bits (938), Expect = 2e-99, Method: Composition-based stats. Identities = 151/690 (21%), Positives = 269/690 (38%), Gaps = 88/690 (12%) Query: 16 PGFKPREPQRQMAVAVTQAIEKG--QPLVVEAGTGTGKTYAYLAPA---LRAKKKVIIST 70 P K R+ Q M + E +PL++EA TG GKT YL P + K++++T Sbjct: 256 PHLKWRKAQATMMDLIHDNFESETPEPLLIEAATGLGKTIGYLLPYSYRMSRDHKLVVAT 315 Query: 71 GSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE-QQALAGGDLPVQILSD 129 + LQ+Q+ ++ P + + + N A++K S+Y+ L R E L + +++L Sbjct: 316 STTLLQEQILTQAKPLLERLVGRQINAAVVKSASHYIDLHRFELSLRLPHKNRMIRLLQM 375 Query: 130 VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAM 189 IL+ W QT GD+ + + + + L P Y + F+ + + Sbjct: 376 KILV--WLTQTTTGDLDELNLTSYKTPFFVSIQHRGLASLNPQAPFYHEDFLRRLTHRQQ 433 Query: 190 DADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLD 249 A+++V NH +LA ++ +G ++ DEA + ++ S Sbjct: 434 QAELLVTNHA-YLASHADEQQIWG----PKPYLVLDEAQNMVFNVQTISQETWSLSSWQF 488 Query: 250 LAK---------------DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQL------GE 288 A+ + A + + + L K +L ++ L E Sbjct: 489 WAQKGLQYTTGAQTNNLVRLFPAETPQNRSLKLLHKTLGKLTRTLAHLETYLTEQFEPDE 548 Query: 289 PGYRGNLRELLANP---------------QIQRAFLLLDDTLELCYDVAKLSLGR----- 328 P E NP Q+ R L + D + L R Sbjct: 549 PTDGQTFSERYLNPDEVIQFVNASQREFGQLNRELLTIQDHFLALRYALEDQLARYTESD 608 Query: 329 SALLDAAFERATLYRTRLK--------RLKEINQPGYSYWYECTSR-------HFTLALT 373 A+ + L + + Q ++ + T F L Sbjct: 609 LAIWQSFENELNLLLADVDHYQRFEQLFIATKPQERHALAIQITRPSQPSQLPQFKLHWQ 668 Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL---LPSPFDYSR 430 LS + ++++ T ATL+VN + G + ++L L SPF + + Sbjct: 669 LLSAGPQMQQVL-SHFEPVTLTGATLAVNGHFDYLKREFGFTEEQALQTKKLRSPFRFKQ 727 Query: 431 QALLCVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT 487 QA + + P + +Q+AA + +I N + +L ++ + + Sbjct: 728 QARFYIAEDGPVQKELTPSDYHQQVAAQVMTLIANNPHQTLILFNANQTLEQVYYALGRA 787 Query: 488 ---MTLPVLLQGET-SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFT 543 + VL QG T S ++ ++F+ +++L+ATSSF GVD L +VI+ +LPF Sbjct: 788 GLSLDREVLAQGITGSAEKITKRFMLGHDSVLLATSSFVSGVDFPEAALEMVILVQLPFD 847 Query: 544 SPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 +P+ + R +G +PF LP A I L+Q GRLIR +D G+ + D RL+ Sbjct: 848 APNALQTRVRYAQLAAQGINPFKAEALPKATIRLRQSFGRLIRTPNDHGLFICLDPRLLT 907 Query: 604 RPYGATFLASLP--------PAPRTRDIAR 625 YG +LP P R+++ Sbjct: 908 TQYGQQMRRALPASLPQKAAPVQTIRELSD 937 >UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBP3_WEIPA Length = 970 Score = 361 bits (927), Expect = 4e-98, Method: Composition-based stats. Identities = 154/687 (22%), Positives = 258/687 (37%), Gaps = 80/687 (11%) Query: 20 PREPQRQMAVAVTQAIEK--------GQPLVVEAGTGTGKTYAYLAPAL----RAKKKVI 67 RE Q ++ A+ + EA TG GKT +L P + +KKVI Sbjct: 283 YREQQAKLMNAINNHYSGSSLSEKPGESAFIAEAPTGMGKTLGFLLPYAYLTNQNQKKVI 342 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 ++ + LQ Q+ + L + LKGR YL L+ ++ +L + + Sbjct: 343 VTEPTITLQTQVTETVNTVLHDILPFEVRAVSLKGRHQYLNLQSFKR-SLQIDEGTTSLQ 401 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 + W +T+ GD + + ++ +N GS P Y F + Sbjct: 402 FIKAQILVWLTETMRGDFDELHLMNAQQKFIAKLSQNANNPAGS--PFYGYEFFERQYVL 459 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 A +A ++VNH E G E P ++ DEA LPD L + Sbjct: 460 AQNAQFLIVNHSYLAE--YANELGTSENKP---YLVIDEAQNLPDAVLNQSRHQLPIQTW 514 Query: 248 L------------DLAKDITIAYRTELKDTQQLQKCADRLA-----------QSAQDFRL 284 L D + R Q K L + F L Sbjct: 515 LARVQTAINLILQDAKPAVGDILRNIFGGNQLKNKLLRALEMLSVEIPQLQVSLYRRFLL 574 Query: 285 QLGEPGYRGNLRELLANPQIQRAFLL--------------LDDTLELCYDVAKLSLG--- 327 P +G LAN + ++ L+D L+ + G Sbjct: 575 NQKAPATQGTYEIALANNDFAQFWIDQSNHVQSIHTGASDLEDALQELLTQFSDTKGAFS 634 Query: 328 ---RSALLDA--AFERATLYRTRLKRLKEI---NQPGYSYWYECTSRH----FTLALTPL 375 R L D + + Y +L ++ +W T H L+ L Sbjct: 635 LGERQQLADFRRLLDNISQYEKQLTTFQQDLVDFPEASIFWLTETQSHDSSNLQLSGGLL 694 Query: 376 SVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSP--FDYSRQAL 433 + FKE + + ATL + + RL +++ + + P FD+ QA Sbjct: 695 HTLNYFKEKVYPHFMAPTVIGATLFTSTKSGYLYDRLNLDKETATVRHYPDIFDFKNQAD 754 Query: 434 LCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP-- 491 L +++N P + + LA L + + N +L S ++ + ++ Sbjct: 755 LIMVKNAPLPTEKDFSNYLAKQLVDVTTSVNQNTLVLFNSLDTIQQVYNHIQSNKKFQQS 814 Query: 492 ---VLLQGETS-KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 +L QG T +G++ ++ S +++ +SFWEG+D+ GD L L+II +LPF P+ Sbjct: 815 SLTLLAQGVTGTRGKIKKRMQSEDGLVVLGAASFWEGIDLPGDQLRLLIIARLPFDRPNT 874 Query: 548 PLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 L KA G PF + LP AV+ L+QG+GRLIR D G ++I D R++ + YG Sbjct: 875 VLQKAEEAVINSEGKQPFYQSTLPKAVLRLRQGIGRLIRTPTDYGAVIIYDARILTKSYG 934 Query: 608 ATFLASLPPAPRTRDIARAVRFLAIPS 634 T +P +++ L + + Sbjct: 935 KTLRKMMPSNLPQKELNDYEVSLELKN 961 >UniRef50_P50831 Probable ATP-dependent helicase ypvA n=105 Tax=Bacillales RepID=YPVA_BACSU Length = 641 Score = 361 bits (926), Expect = 5e-98, Method: Composition-based stats. Identities = 141/602 (23%), Positives = 249/602 (41%), Gaps = 40/602 (6%) Query: 16 PGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKKVIISTG 71 GF R+ Q MA + +A ++ + + EAG GTGKT YL A+ K II+ Sbjct: 35 KGFDLRDEQVFMAFQLERAFKEKKVMFAEAGVGTGKTLVYLLFAISYARYVGKPAIIACA 94 Query: 72 SKALQDQLYSR--DLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD-----LPV 124 + L +QL + D+ +++ L + L K YLCL++LE+ D L Sbjct: 95 DETLIEQLVKKEGDISKLAEHLDLKIDTRLSKSHEQYLCLKKLEKTMQRSDDDKWLDLYE 154 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTN-DNCLGSDCPMYKDCFVVK 183 + S V ++ GD +++ + W V+ + +CL C M C + Sbjct: 155 SLPSFVHESQAMQRFYPYGDRKQYANLSNEE--WSDVSYDSFQDCLT--CDMRHRCGLTL 210 Query: 184 ARKKAMDA-DVVVVNHHLFLADMVVKESGFGE----LIPEADVMIFDEAHQLPDIASQYF 238 +R + D+++ +H ++ + +ES E L+P+ ++FDE H L A + Sbjct: 211 SRDYYRKSTDLIICSHDFYMEHVWTEESRKREGQLPLLPDHSAVVFDEGHLLEFAAQKAL 270 Query: 239 GQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYR---GNL 295 + L + + ++ + + + +F L E + Sbjct: 271 TYRVKQSTLELFLERLLQN-----DIREEFAELIEDALLANDEFFYVLSEESKEVAGSHR 325 Query: 296 RELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQP 355 E+ + ++++A L L+ + + Y ++ + Q Sbjct: 326 LEIKNDHRVKKAADELCRLLDKIGEALVFESEMYTIDQYELSVVEEYVEQMAYSLSLYQK 385 Query: 356 GYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE 415 W E T + P +VA+ E + K +IF+SATLS + LGI Sbjct: 386 DAISWLEKKEAESTFVVMPRTVAEVLGEKVFSKKIPYIFSSATLSEGGSFDYIADSLGIH 445 Query: 416 QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 SL + SP+DY Q + + + +A + + + GR +L S Sbjct: 446 DYLSLTVDSPYDYDEQMSINLYAKTDMDAEQKTAETIETI-----KRYKGRTLVLFPSFE 500 Query: 476 MMRDLAEQFRA-TMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSL 534 + + E A + P+ +G+ L+++F +L + WEG+D+ GD L Sbjct: 501 ELNEFKELSAAWELPYPIFFEGDEEISSLVEKFQEEEETVL-CSVHLWEGLDIPGDALKN 559 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 V I LPF P DP+ A+ + DPF+EV LP ++ ++QG+GRLIR D G + Sbjct: 560 VTIWSLPFP-PHDPVFTAKRNGAK---KDPFEEVDLPYMLLRVRQGIGRLIRSNQDSGSI 615 Query: 595 VI 596 I Sbjct: 616 HI 617 >UniRef50_Q2LUZ3 ATP-dependent helicase, dinG family n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUZ3_SYNAS Length = 917 Score = 357 bits (917), Expect = 6e-97, Method: Composition-based stats. Identities = 168/666 (25%), Positives = 275/666 (41%), Gaps = 91/666 (13%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA-----KKK 65 LA A GFK R+ Q A V +A+ G L +EAGTGTGKT YL P + + + Sbjct: 258 LAGAAQGFKFRKTQLDYAFHVAEALNDGAVLTLEAGTGTGKTQGYLIPVMEYLHRNPEAR 317 Query: 66 VIISTGSKALQDQLYSRDLPTV--SKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP 123 ++IST +K+LQDQ++ +++ + ++A+LKG+SNYLC E+L A Sbjct: 318 IMISTYTKSLQDQIFQQEINRTVALERGYSKISIAVLKGKSNYLCAEKL-NSAFEEDLKG 376 Query: 124 VQILSD------VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 +L+ + L R +TV I ++ + S C G+ + Sbjct: 377 ASLLAWLYFVNLIFLYRQVDGETVGEKIGRYLNDGLYLRQLQDEISAKTGCAGN----HT 432 Query: 178 DCFVVKARKKAMDADVVVVNHH-LFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 C A +A A +V+ NHH L L D + SG I DEA+ Sbjct: 433 LCPAQVALAEARSARLVITNHHKLALIDHDEELSGLF------RNCIVDEANHFEQAVRN 486 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTELKD--------TQQLQKCADRLAQSAQDF--RLQL 286 F S+ SR++ D+ + + + QQ + + Q+ +F LQ Sbjct: 487 AFSLSVHSREITDIIAYLESVLQRVSRKVSGEVEMMLQQCHETINEFHQTVHEFGSMLQT 546 Query: 287 GEPGY-RGNLRELLA------NPQIQRAFLLLDDTLE------------LCYDVAKLSLG 327 P + +G + EL + I++ L D L V K+ Sbjct: 547 IHPYFAKGEILELPVCHGAYPDGDIEKMLRLFADLLRGIGKGLSFLKDPDASRVLKILPR 606 Query: 328 RSALLDAAFERATLYRTRLKRLKE-INQPGYSYWYECTSRHFTLALTPLSVADKFKELMA 386 + A R + +++ I + +H+ + ++ + V+ K + Sbjct: 607 SQERVRNAIARLYTEADNFQTMEKTIRTENTVAACQLFFKHWVITVSAVDVSSLIKAHVY 666 Query: 387 QKPGSWIFTSATLSVNDDLHHFTSRLGIEQA-------------------------ESLL 421 K I+TSATL + + F +G++ A + Sbjct: 667 NKRDCVIYTSATLRHRNRFNDFCRIVGMDDATGCDSISPAGKEDRTFFTDQDGREFRFVA 726 Query: 422 LPSPFDYSRQALLCVLRNLP---QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 +PSP+ + + N+ + + +L +I N GR +L +S++ + Sbjct: 727 IPSPYSLES-MKVFLPDGAVNGGYENKQAWLKAVVDLLPELIRKNRGRTLVLFSSYSDLE 785 Query: 479 DLAEQFRATM---TLPVLLQGET-SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSL 534 +A Q + P+L+Q G L+ +F S ++L +FW GVD RGDTL+ Sbjct: 786 AVALQTGDEIIADGYPLLIQQMGRPTGNLIDEFRSIRESVLFGVETFWYGVDFRGDTLTQ 845 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 VII ++PF P DPL AR + F +A+I LKQG+GRLIR D+G L Sbjct: 846 VIITRIPFPYPFDPLQTARKGSLS---KEEFWSRYYYEAIIKLKQGMGRLIRSETDKGRL 902 Query: 595 VICDNR 600 V D+R Sbjct: 903 VFLDSR 908 >UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactobacillus RepID=D0R432_LACJF Length = 938 Score = 356 bits (914), Expect = 1e-96, Method: Composition-based stats. Identities = 155/673 (23%), Positives = 280/673 (41%), Gaps = 86/673 (12%) Query: 16 PGFKPREPQRQMAVAVTQAI--EKGQPLVVEAGTGTGKTYAYLAPA---LRAKKKVIIST 70 + R Q + + + + LVVEA G+GKT++YL L + +K++++T Sbjct: 257 KNLRFRRGQVSLINRLHDFVYSDSDNSLVVEAPNGSGKTFSYLMAYAYELYSGRKLVVAT 316 Query: 71 GSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 +K LQ+Q+ +++P + + + + ++K S+YL L+ + Q L Sbjct: 317 PTKVLQEQILKQEIPQLLRVTRLDLDAQIVKSSSHYLDLDGFYNSLYQTDNPIQQTLILQ 376 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMD 190 + + W +T GD+ + + + D +G+ + F AR + Sbjct: 377 MGILIWLTETETGDLDELQLTNYQAPLFAAIEHPGDARIGT--SFAEYDFWNLARSRQEQ 434 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQL-PDIAS---------QYFGQ 240 AD+++ NH + +S +G+ ++ DE+H+ ++AS ++G Sbjct: 435 ADILITNHAYLANHYM--DSIWGQ----NPFLVVDESHRFVENVASSRNDSLQFESFWGM 488 Query: 241 SLSSRQLLDLAKDITIA-----------YRTELKDTQQLQKCADRLAQSAQD---FRLQL 286 R LL A+D A KDT L +++ Q+ D F Sbjct: 489 CSHLRNLLFYAEDSAKARFGNNLEFKLILDKLEKDTNDLIHSINKIQQAFYDNRKFATSW 548 Query: 287 GEP-------GYRGNLRELLANPQIQRAFLLL------------DDTLELCYDVAKLSL- 326 E G++G ++L N + + L L + L L Y K L Sbjct: 549 EEKRQNAITLGFQG--QDLFNNIKHFKHLLNLMQDNIEIVRQETNQLLFLLYHQQKNLLT 606 Query: 327 ----------GRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTP-- 374 LD E+ L +L K+++ G+ + LT Sbjct: 607 NDDVLIRDLQEEIDQLDYYSEQNYLLLDQLSDPKKLDHEGFVLEISNEDDPLSTNLTWLT 666 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL--LLPSPFDYSRQA 432 L ++ K+ + +F SATL+ DD + L ++ ++L F + Sbjct: 667 LDPEEEVKQ-LYHYFDKKLFISATLAEQDDFSYTIKNLYLDPKKTLTYRAKPSFKVEKHL 725 Query: 433 LLCVLRN--LP-QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT-- 487 + L + P N P ++ +L I + + +L T+ ++RD+ + Sbjct: 726 KVYALSDNNAPEDPNSPEYETFISNLLTQIKDYRH--VLVLFTNLDVIRDVFSRLSENSN 783 Query: 488 --MTLPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTS 544 +L QG S ++ ++F A A+L+ +SFWEG+D + + + L I+ +LPF S Sbjct: 784 ALKDYEILAQGLTGSNEKIAKRFGIAEKAILLGANSFWEGIDFKHNGVDLAIVTRLPFES 843 Query: 545 PDDPLLKARMEDCRLRGG--DPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 PD P +K R E + + G F+ LP A++ +QG GRLIR+ D GV V+ D R+ Sbjct: 844 PDQPEVKLRTECLKKQVGADKIFEVDTLPRAILRFRQGCGRLIRNERDHGVFVVLDQRVW 903 Query: 603 MRPYGATFLASLP 615 + YG FL+ LP Sbjct: 904 NKSYGEQFLSGLP 916 >UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=11 Tax=Bacilli RepID=DING_STAEQ Length = 902 Score = 355 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 152/668 (22%), Positives = 264/668 (39%), Gaps = 81/668 (12%) Query: 8 DGQLAKAIPG------FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA-- 59 DG L R Q +A + + ++EA G+GK+ AYL A Sbjct: 233 DGTLKDLYKNVTQSLNLTYRPQQLYLAEIILDQLMHSDKAMIEAPLGSGKSLAYLLAATM 292 Query: 60 --LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL 117 + + V+IST +K LQ QL +D+P ++ L + N +L+K +++Y+ L L Q L Sbjct: 293 YNIETGRHVMISTNTKLLQSQLLEKDIPLLNDVLDFKINASLIKSKNDYISL-GLISQIL 351 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 ++ + L W +T GDI D + + P+ Sbjct: 352 KDDTNNYEVSILKMQLLIWITETNTGDIQELNLKGGQKMYV-------DQKIETYVPVRH 404 Query: 178 DCFVVKA-RKKAMDADVVVVNH-HLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIAS 235 D ++ A + + + NH HL +D E+ +L + I DEAH+LPD A Sbjct: 405 DIHYYNYIKRNAQNIQIGITNHAHLIHSD---SENTIYQLFDDC---IIDEAHRLPDYAL 458 Query: 236 QYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRG-- 293 L+ + + ++L K D+L Q +L + G Sbjct: 459 NQVTNDLNYSDVKYQL------GLIGKNENEKLLKAVDKLEQQRILEKLDIAPIDVFGLK 512 Query: 294 -NLRELLA-NPQIQRAFLLL-------DDTLELCYDVAKLSLGR-----SALLDAAFERA 339 N+ EL N Q+ + DD + + V G A++D + Sbjct: 513 ININELHDLNEQLFTTIYNIIQTSDVYDDDIHKYHYVYDFETGEILKDLRAIIDKLNKTI 572 Query: 340 TLYR------------------TRLKRLKEINQPGYSYWYECTS----RHFTLALTPLSV 377 ++ + K +++ + ++ + + L + V Sbjct: 573 EIFNGMNHKTIKSVRKQLLYLHDKFKLIEQSIKDHHTSFISIKNLAQKSTIRLLVKDYDV 632 Query: 378 ADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCV 436 D + + +K S F S TL+ N F + + + + +P S + V Sbjct: 633 KDILTKQVLEKFKSLTFISGTLTFNHSFKAFQNWFNEDIDFNTFEISTPLTSSNHTNVFV 692 Query: 437 LRNLPQTNQPGSARQLA---AMLRPIIEANNGRCFMLCTSHAMM---RDLAEQFRATMTL 490 ++ N +A + I +C +L TS+ MM +DL + Sbjct: 693 PNDVETYNYKNLDDYVASIVDYIVEYITVTQSKCLVLFTSYKMMHMVQDLLNELPELEDY 752 Query: 491 PVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL 550 +L Q + +++QQF + ++L+ TS+F+EG D + + L V+I KLPF + + + Sbjct: 753 VILTQQQNQNYKIVQQFNNFDKSILLGTSTFFEGFDFQANGLKCVMIAKLPFMNKHN--I 810 Query: 551 KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATF 610 K + D F + LPDAV +QG+GRLIR DD+G++V D+RLV Y + F Sbjct: 811 KYWLMDSEFT--STFKDYVLPDAVTRFRQGLGRLIRHEDDKGLIVSFDDRLVNSTYKSFF 868 Query: 611 LASLPPAP 618 SL Sbjct: 869 AQSLEHFK 876 >UniRef50_Q73F47 ATP-dependent helicase, DinG family, putative n=1 Tax=Bacillus cereus ATCC 10987 RepID=Q73F47_BACC1 Length = 915 Score = 349 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 159/659 (24%), Positives = 272/659 (41%), Gaps = 62/659 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQ-PLVVEAGTGTGKTYAYLAPA 59 + D F +L K R Q QMA+ + + +E + +++EA GTGK+ L P Sbjct: 8 ILDIFEE--KLIKHYGTSIIRASQLQMALDIGEFLESSKRVMIIEAPVGTGKSLGALVPV 65 Query: 60 LRAKK-------KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL 112 L +K V+ +T + LQ QL ++P + K L N + KG+S+Y C R+ Sbjct: 66 LVDRKYNTFDKRNVMYATATINLQGQLMRSEIPLLRK-LGLVNNPIVAKGKSHYYCHFRM 124 Query: 113 EQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTC---VSVAEDSQAWPLVT-STNDNC 168 + + + + +D +L + + G S + + W V S NC Sbjct: 125 KNSSQKIENE-LFSRTDQHVLEKFFRLSKTGQRSELEEEHGFNIEDKKWKRVELSNKSNC 183 Query: 169 LGSDCPMYKDCF--VVKARKKAMDADVVVVNH----HLFLADMVVKESGFGELIPEADVM 222 C C + + R KA++ DVV+ NH + FL M + L + ++ Sbjct: 184 --RACQFSMVCPTIIHRRRFKAIENDVVITNHDQLINSFLNAMDMDSIYEPVLKTDMGLV 241 Query: 223 IFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDF 282 I DEAH + ++ + L +L K I +D + +K DRL + Sbjct: 242 IIDEAHDFLETFIGRLEKTFTLSYLRNLEKYIE-------RDNYKWKKAVDRLG----AW 290 Query: 283 RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLY 342 + E + + L + L L L A + RA + Sbjct: 291 VKRNKEYNKKSDAGRYLLTDFVFSILKTLQKIL------------NENLFQAKYRRAEIL 338 Query: 343 RTRLKRL-KEINQPGYSYWYECTSRHFTLALTPLSVADKFKELM--AQKPGSWIFTSATL 399 L + + + Y+ W F + + + F++++ + IF S TL Sbjct: 339 DELSGILHRFLQKEKYTSWISLEDNEFHVIEN--NYKEVFRQMLDYIKNSNKIIFMSGTL 396 Query: 400 SVNDDLHHFTSRLGIE--QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLR 457 +VN D + ++ I+ +A + +L SPFDY QAL+ + + L N+ +R Sbjct: 397 TVNKDFSYIKNQWNIKSGEAVTKVLNSPFDYKNQALIYIPKKLGNPNKDEFIENALKEIR 456 Query: 458 PIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQGETSKGQLLQQFVSAGNAL 514 ++ GR +L TS M + + + +P+ QGE+ L ++F ++ Sbjct: 457 KLLRLTGGRTLLLNTSKDHMDEFYNGIKVELATSNVPLYKQGESGVENLTKRFKELEESV 516 Query: 515 LVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAV 574 LV + SF+ G + G +L+ VII+KLPF + +DP+++ + D F +V P + Sbjct: 517 LVGSGSFFSGFSIAGTSLTSVIINKLPFPAFNDPIIELMSMGIKKE--DRFKKVSYPMMI 574 Query: 575 ITLKQGVGRLIRDADDRGVLVICDNRLVMR-PYGATFLASLPP--APRTRDIARAVRFL 630 L Q VGRLIR +D G++ I D R+ YG L TR F Sbjct: 575 NKLDQAVGRLIRSIEDYGIVTILDERIYTSQGYGKDVRELLKEQGYVLTRSWEEVESFY 633 >UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03FN6_PEDPA Length = 929 Score = 347 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 147/638 (23%), Positives = 253/638 (39%), Gaps = 72/638 (11%) Query: 38 GQPLVVEAGTGTGKTYAYLAP----ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKY 93 + +V+EA TG+GKT YL P A ++KV++S + LQ+Q+ + ++ L+ Sbjct: 279 KKHVVIEAPTGSGKTLGYLFPLSYIAREQQRKVVVSVPTTILQNQVLAVGRQQLNAILET 338 Query: 94 TGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAE 153 A+LKG SNYL LE + L + + W +T GD Sbjct: 339 PMQFAILKGSSNYLNLEAFMKSITHQT-LSKDSRLVAMKILVWLTKTDTGDFDEINHHIN 397 Query: 154 DSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG 213 S + L ++ F +A KK AD ++ NH + E G Sbjct: 398 FSNFVDGIRHHGKTVLNPKSKFFEYDFYRRAMKKLKYADFIITNHRYLA--LHADEIGES 455 Query: 214 ELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL----DLAKDITIAYRTELKDTQQLQ 269 + P +++ DEA P I S + L +L+ L + + ++ L + Q Sbjct: 456 DQQP---LLVIDEAQHFPTIVSNMNQKFLDLNELMMETHRLVSRLVMNHKRNLIQATKHQ 512 Query: 270 KCA----DRLAQSAQDFRLQL------------------------GEPGYRGNLRELLAN 301 A R S + Q+ E + N+ +A Sbjct: 513 PLAGFHIRRFVNSLEHINTQITEIQQKLFDKFVAPRKKNLYENQPAEIVIKNNVINQMAK 572 Query: 302 PQIQRAFLLLD------DTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ- 354 + + L D L+ + +L+ + ++EI Sbjct: 573 HEFHQVVQELANTFIEFDALDRFFKDQELTPEIRDDWAQIKAFQSNLTKFYDAIREITDH 632 Query: 355 -PGYSYWYECTSRH----FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFT 409 YW H + L + +++ + + TL +F Sbjct: 633 LNQNIYWITLGPNHDPGSIRIGKEILDTGEFYRQKIEPFYHKVLLIGGTLFFEHKRSYFL 692 Query: 410 SRLGIEQAESLLLPSPF----DYSRQALLCVLRNL----PQTNQPGSARQLAAMLRPIIE 461 + G+ + E+ + F D+ Q VL++ ++NQ A LA + + Sbjct: 693 DQFGLHKPETSIR--TFRRGVDFENQLDFEVLQSDFTIDYESNQDQYADFLAEAIEALTR 750 Query: 462 ANNGRCFMLCTSHAMMRDLAEQFRA---TMTLPVLLQG-ETSKGQLLQQFVSAGNALLVA 517 N + +L S +R++ + + ++ QG SK +++++F NA+L Sbjct: 751 DVNRQTLVLFNSLETLRNVYNRLHDSDLNESRRIIAQGIHGSKAKIIREFNDEENAILFG 810 Query: 518 TSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITL 577 +SFWEGVD GD L +I+ +LPF SP+D +++ R F LPDA++T Sbjct: 811 AASFWEGVDFPGDRLEYLIVTRLPFRSPEDRMVQ----FARKNKRSSFMSFVLPDALLTF 866 Query: 578 KQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 KQG+GRLIR++DD GV V+ DNR++ + YG F+ LP Sbjct: 867 KQGIGRLIRNSDDTGVAVMLDNRIINKDYGKLFIKQLP 904 >UniRef50_B8I7B6 DEAD_2 domain protein n=3 Tax=Clostridium RepID=B8I7B6_CLOCE Length = 790 Score = 345 bits (885), Expect = 3e-93, Method: Composition-based stats. Identities = 125/645 (19%), Positives = 240/645 (37%), Gaps = 80/645 (12%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIIS---- 69 P R QR++AVAV + I +G+ L +A TG GKT + L PA++A + IS Sbjct: 186 QFPFKSYRRGQRELAVAVYKTIMQGKKLFAQAPTGIGKTISTLFPAVKALGEQHISKIFY 245 Query: 70 ----TGSKALQDQLYSR--DLPTVSKALKYTGN--VALLKGRSNYLCLERLEQQALAGGD 121 T ++ + ++ +S+ + V + + T + KG S C + A + Sbjct: 246 LTAKTITRQVAEEAFSKMRECGLVFRTITLTAKDKICFNKGGS---CNPDFCEYAKGHYN 302 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 + DV+ + + + +K C Sbjct: 303 RVNNAMEDVLNTSQ---------------------------NLSREVIEEYALKHKVCPF 335 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS 241 + ++ AD +V +++ D V F + DEAH L D A + F Sbjct: 336 EFSLDLSLWADCIVCDYNYAF-DPRVYLKRFFLNNTGDYAFLVDEAHNLVDRAREMFSAQ 394 Query: 242 LSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLAN 301 + L+ K + ++ K +++ R Q E G+ +++ Sbjct: 395 IHKSAYLEAKKLMK-------SKVPKVAKILNKINSYMVTLRKQCAEEGF------IISK 441 Query: 302 PQIQRAFLLLDDTLELCYD-VAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 +++ + LL++ + + + K + E R+ + Y + Sbjct: 442 TELKDLYRLLNNFISESEEWILKNQNNNIEGFEQLLE-VYFDSIAFTRMADFYDERYVTF 500 Query: 361 YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAES 419 E S + L L + + + ++ + +F SATL+ +++F LG + + + Sbjct: 501 IETKSMDVRVKLFCLDPSYLLSDAV-KRGKTAVFFSATLT---PVNYFMDILGGDKEDYN 556 Query: 420 LLLPSPFDYSRQALLCVLRNL--PQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 + L SPFD L V N+ ++ S ++ ++ I G + S+ M Sbjct: 557 INLASPFDKDNLC-LIVNDNISTRYKSRDKSYDKIVDIIWSSISKRTGNYVVFFPSYKYM 615 Query: 478 RDLAEQFRATMTL-PVLLQG----ETSKGQLLQQFVSAGNALLV----ATSSFWEGVDVR 528 ++ +F ++Q E + L +F S LV F EG+D++ Sbjct: 616 NEVYTRFTEQYPETNTIIQETSMTEEERESFLNRFQSGTEKSLVSFGVLGGIFSEGIDLK 675 Query: 529 GDTLSLVIIDK--LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIR 586 GD L II LP SP+ ++ M+ + + F+ + + + Q GR+IR Sbjct: 676 GDRLIGAIIVGVGLPQVSPEQNII---MDYFKNKNRMGFENAYMYPGMNKVLQAAGRVIR 732 Query: 587 DADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 D G +++ D R Y F R +D + + L Sbjct: 733 SEHDVGTVILLDERFSNGNYRRLFPKHWEHVLRVQDTGQLEKRLE 777 >UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=53 Tax=Staphylococcus RepID=DING_STAAB Length = 897 Score = 344 bits (883), Expect = 5e-93, Method: Composition-based stats. Identities = 142/647 (21%), Positives = 261/647 (40%), Gaps = 63/647 (9%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----LRAKKKVIISTGS 72 G R Q +A + + + ++EA G+GK+ AYL A + K V+IST + Sbjct: 248 GLTYRPQQLYLAETILDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNT 307 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 K LQ QL +D+P +++AL + N L+K +S+Y+ L L Q L ++ + Sbjct: 308 KLLQSQLLEKDIPAMNEALNFKINALLIKSKSDYISL-GLISQILKDDTSNYEVNILKMQ 366 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVK-ARKKAMDA 191 L W +T GDI + D + + P D ++ A + Sbjct: 367 LLIWITETPSGDIQELNLKGGQKMYF-------DQKIETYVPARHDVHYYNFIKRNAQNI 419 Query: 192 DVVVVNH-HLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL--- 247 + + NH HL +D+ E+ +L + I DEAH+LPD A LS + Sbjct: 420 QIGITNHAHLIHSDV---ENSIYQLFDDC---IVDEAHRLPDYALNQVTNELSYADIKYQ 473 Query: 248 LDLAKDITIAYRTELKDTQQLQKCADRLA-------------QSAQDFRLQLGEPGYRGN 294 L L + D + Q+ ++L + QL + Sbjct: 474 LGLIGKNENEKLLKAIDQLEKQRILEKLDIAPIDIFGLKASMNEIHELNEQLFSTIFTII 533 Query: 295 LRELLANPQIQRAFLLLD-DTLELCYDVAKLSLGRSALLD-----------AAFERATLY 342 + + I R + +T ++ D+ + + L+ + ++ Sbjct: 534 NDSDVYDDDIHRFHNVFTFETKDILKDLHAIIDKLNKTLEIFNGISHKTVKSLRKQLLYL 593 Query: 343 RTRLKRLKEINQPGYSYWYECTS----RHFTLALTPLSVADKFKELMAQKPGSWIFTSAT 398 + + K +++ + G++ + + L + +V D + + +K S IF S T Sbjct: 594 KDKFKNIEQSLKAGHTSFISIKNLSQKSTIRLYVKDYAVKDVLTKQVLEKFKSLIFISGT 653 Query: 399 LSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCVLRNLPQT---NQPGSARQLAA 454 L N F + + + + ++ + + ++ N + + Sbjct: 654 LKFNHSFDAFKQLFNKDVHFNTFEVNTSLQSAKNTSVFIPSDVASYQYKNIDEYVASIVS 713 Query: 455 MLRPIIEANNGRCFMLCTSHAMMRDL---AEQFRATMTLPVLLQGETSKGQLLQQFVSAG 511 + + +C +L TS+ MM + + VL Q + +++QQF + Sbjct: 714 YIIEYTTITSSKCLVLFTSYKMMHMVQDMLNELPEFEDYVVLTQQQNQNYKIVQQFNNFD 773 Query: 512 NALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLP 571 A+L+ TS+F+EG D + + + V+I KLPF + + A+ F E LP Sbjct: 774 KAILLGTSTFFEGFDFQANGIKCVMIAKLPFMNKHN----AKYWLMDSEFTSTFKEYVLP 829 Query: 572 DAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 DAV +QG+GRLIR+ +DRG++V D+RL+ Y F +L Sbjct: 830 DAVTRFRQGLGRLIRNENDRGIIVSFDDRLINSNYKNIFEQTLENYR 876 >UniRef50_A8MJA6 DEAD_2 domain protein n=11 Tax=Clostridia RepID=A8MJA6_ALKOO Length = 800 Score = 336 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 134/638 (21%), Positives = 243/638 (38%), Gaps = 70/638 (10%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIIS---- 69 P R+ QR++AVAV + I++ + L +A TG GKT + L P ++A + I S Sbjct: 195 QFPFSNYRKGQRELAVAVYRTIKEEKKLFAQAPTGIGKTISTLFPTVKAIGEGITSKVFY 254 Query: 70 ----TGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ 125 T ++ + ++ +SR K++ L + +C E+ +Q Sbjct: 255 LTAKTITRQVAEEAFSR-----MKSMGLRFKTVTLTAKDK-ICFEKGKQCNPEECSFAK- 307 Query: 126 ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKAR 185 G S D + S + ++ C + Sbjct: 308 -----------------GHFDRVKSGLAD--LFQNEDSFTREIIEFYAQRHQICPFEFSL 348 Query: 186 KKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSR 245 A+ AD V+ +++ V + F + + +I DEAH L D + F ++ + Sbjct: 349 DIAIWADGVICDYNYVFDPRVYLKRFFADEKGDYTFLI-DEAHNLVDRSRGMFSAEINKK 407 Query: 246 QLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQ 305 L+ R +Q++ K D+L + R + GE + E + Sbjct: 408 IFLEQK-------RVMKHQSQKVYKTLDKLNAFMIEARKKCGEHSFYIQKEENTEIYHLL 460 Query: 306 RAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTS 365 +F+ D EL + ++ + LL+ F + + E Y + E Sbjct: 461 ASFVRETD--ELFKEGYQMDENKD-LLELYFNAFAFLK-----IAEFYDERYRTYIEKRQ 512 Query: 366 RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG-IEQAESLLLPS 424 + L + E + ++ + IF SATL+ L +F LG E+ ++ L S Sbjct: 513 GDVFFKIFCLDPSYLLGEAI-KRGRTAIFFSATLT---PLPYFKEILGGAEEDYAIRLGS 568 Query: 425 PFDYSRQALLCV-LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQ 483 PF+ L+ + N+ S +A ++ + E G F+ S+ MR + + Sbjct: 569 PFESENLGLMVADYISTKYRNRDRSYIHIADVIAKVSEGKTGNYFVFFPSYQYMRRVLDV 628 Query: 484 FRATMT-LPVLLQG----ETSKGQLLQQFVSAGN--ALLVA--TSSFWEGVDVRGDTLSL 534 F + VL Q E + + L +F ++ F EGVD+ G+ L Sbjct: 629 FVEEYPHINVLQQQQTMTEEEREEFLNKFEDQPERTSIAFGVLGGIFSEGVDLVGERLIG 688 Query: 535 VII--DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRG 592 VII LP S + L+ ME + ++ + + + QG GR+IR DRG Sbjct: 689 VIIIGVGLPQLSLEVNLI---MEYFNQKNNKGYEYAYMFPGMNKVLQGAGRVIRTETDRG 745 Query: 593 VLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 ++ + D+R Y A F + +D + +L Sbjct: 746 IVCLVDDRFTSYGYQALFPPEWKHFRKVKDKKQIETYL 783 >UniRef50_A6LV05 Exonuclease, RNase T and DNA polymerase III n=6 Tax=Clostridium RepID=A6LV05_CLOB8 Length = 976 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 144/640 (22%), Positives = 266/640 (41%), Gaps = 73/640 (11%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL-----------RAKKK 65 G++ R+ Q++ A + + EKG+ + +EA TG+GKT+AY+ A + Sbjct: 258 GYQYRKDQKEFAKKIRENFEKGERIFIEAPTGSGKTFAYVIIAAIETYLNKQKNRKDDAS 317 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYT--GNVALLKGRSNYLCLERLEQQALAGGDLP 123 IIST +K LQ+QL RD+PT+ K L+ N +KG+ NYLC+ER+ + D Sbjct: 318 FIISTNTKELQNQLIERDIPTILKKLRLDDKLNYGAMKGKGNYLCIERINRCEEFQMDEK 377 Query: 124 VQILSDVILLRSWSNQTVDGDISTCVSVAEDS----QAWPLVTSTNDNCLGSDCPMYKDC 179 + ++ LR GDI + + + V ++ C C + C Sbjct: 378 GNL--ALLFLRRLCESGNYGDIENINYLVQKHLELDKYIREVNCDSEQCKLDKCT--RAC 433 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 F+ K + + ++ V+NH L ++ + + +I DE H L + +F Sbjct: 434 FLRKRYNELPEENITVINHSLLACWPYTEKK-------KINHIIIDEGHNLMEKCYDFFA 486 Query: 240 QSLSSRQLLDLAKDITIA----------------YRTELKDTQQLQKCAD---RLAQSAQ 280 + SS + + L I YR ++ + + D + Sbjct: 487 EEFSSAEFIQLLDLIEKGHPSIIAMLLTLNASFGYRETIEKDKIVYLANDIIVNINILLN 546 Query: 281 DFR-LQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYD------------VAKLSLG 327 DFR L+L Y + +Q + + + + + ++L Sbjct: 547 DFRSLRLISGEYNFTTEFFIPREDLQGITNAIGSEISVLKESIYPLYKMLNDYIYNITLD 606 Query: 328 RSALLDAAFERATLYRTRLKRLKEINQ---PGYSYW-----YECTSRHFTLALTPLSVAD 379 D + + Y +LK ++ ++ + + F L PL+V + Sbjct: 607 DEIDGDIDHKNLSDYIAKLKSAFDVLDKFLESSVFYAKILEVDSEYKSFILKNVPLNVGE 666 Query: 380 KFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRN 439 E M + S F SATL + + + LG E+A+ ++P FD ++ + L++ Sbjct: 667 MVNEHMLKDVKSTTFLSATLRIENSFNKIKKHLGQEKAKEFIIPPTFDLKKRTKIFALKD 726 Query: 440 LPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETS 499 + + ++P + ++ + NG +L ++A ++E+ +T ++ S Sbjct: 727 VGRYDEPSYIKNVSKFIYNTALKINGHILVLFNNNARRTAVSEEL-ELLTRGTKIEVHMS 785 Query: 500 KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRL 559 K + +++ + F+EG+DV GD LS V++DK+P SP+ P+L+A + Sbjct: 786 KKSVRALNDKNRQVIILGSKGFFEGIDVPGDALSCVMLDKIPNYSPEYPILRAITTYQKK 845 Query: 560 RGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 + +V P I KQ GRLIR D G +I D Sbjct: 846 ----GYQDVNYPQVCIKAKQIYGRLIRSTFDYGYFIILDP 881 >UniRef50_C6PPR9 Exonuclease RNase T and DNA polymerase III n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PPR9_9CLOT Length = 998 Score = 333 bits (853), Expect = 2e-89, Method: Composition-based stats. Identities = 153/648 (23%), Positives = 280/648 (43%), Gaps = 78/648 (12%) Query: 13 KAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVII 68 + + R QR + + + +EKG+ ++EA TG GK+ AYL PA ++KVII Sbjct: 232 RNGRSYTLRPQQRDASKFIREGLEKGKITIMEAPTGLGKSMAYLLPAAIYTHLKQQKVII 291 Query: 69 STGSKALQDQLYSRDLPTVSKALKYTGNVA--LLKGRSNYLCLERLEQQALAGGDLPVQI 126 ST +K LQ+QL +D+P + +AL +V+ L+KG+SNYLC +R + ++ Sbjct: 292 STNTKGLQNQLVDKDIPNLLEALNLKRDVSYTLIKGKSNYLCFDRFGDIEYP---VDMKT 348 Query: 127 LSDVILLRSWSNQTVDGDISTC-VSVAEDSQAWPLVT---STNDNCLGSDCPMYKDCFVV 182 L + L+ + G+I ++ E L+ ++ C C C+ Sbjct: 349 LVGYVYLKRLMMEKGIGEIEEISPAIMEKFNLGFLINQCNCDSELCDVGACRYKDRCYYA 408 Query: 183 KARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 + +A ++VVNH L L + + ++P + ++ DEAH L A F +L Sbjct: 409 AKVEALKEAQLIVVNHSLLL------KWPYKSIVP-LENIVVDEAHNLTQEAYDAFENAL 461 Query: 243 SSRQLLDLAKDITIA----------YRTELKDTQQLQK-------CADRLAQSAQDFRLQ 285 S + K+I + R KDT L + C ++A F Sbjct: 462 VSYEFEKYLKEIYNSPEKSGYLYYLSRRAKKDTLPLSEVESCIEQCIRQMANIKASFENY 521 Query: 286 LGEPGYRG--NLRELLANPQIQRAFLL----------------LDDTLELCYDVAKLS-L 326 + + G N+++ L + +F++ L+ + + D++ L Sbjct: 522 ITQSGISKDYNIKDHLNINNAKMSFIIRYLEYLKEDLSSLNISLEKAVSVLKDISNLQKD 581 Query: 327 GRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTS--RHFTLALTPLSVADKFKEL 384 R +L E Y L+ + ++ GY +++E + + ++ PL V+ F E Sbjct: 582 KRLKILMEKVEGINSYSRLLEAVINQSEEGYCFYFEVDKFFKWWKISSIPLDVSGAFYEK 641 Query: 385 MAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL---LLPSP-----FDYSRQALLCV 436 + S +F SATLS + + + LGI A+S ++ P FDY ++++ Sbjct: 642 VLSSVKSCLFISATLSTDSGYNSLRNTLGINIAKSQNKEIVEVPPIKPVFDYKGKSVIYA 701 Query: 437 LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM----RDLAEQFRATMTLPV 492 + N+ + + ++ + ++ G +L TS + + E R V Sbjct: 702 MENIDPNDIGAFSEEMKKFVIKLLHNVEGNIIILFTSRKRLDAFKEEATESLRTLGIKVV 761 Query: 493 LLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKA 552 G+ +L + +L+ + ++EG+D+ GD ++ VI+DK+P + +P K+ Sbjct: 762 Y--GKKDIEKLKSR---DERYILLGSKGYFEGIDIPGDAMTTVILDKVPNINSKEPFYKS 816 Query: 553 RMEDCRLRGGDPFDEVQ---LPDAVITLKQGVGRLIRDADDRGVLVIC 597 +E+ RG + + P I LKQ GR+IR D G L I Sbjct: 817 LIENQVERGKNYWQAYAKVNFPIVSIDLKQIYGRIIRTEYDYGDLFIM 864 >UniRef50_A7VIR7 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A7VIR7_9CLOT Length = 856 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 133/624 (21%), Positives = 243/624 (38%), Gaps = 78/624 (12%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQD 77 ++ R+ Q+QMA V +AIE + L V+A TG GKT A + P+++A ++S Sbjct: 251 YEYRKGQKQMAACVYKAIEGERRLFVQAPTGIGKTMAAMFPSVKAFATGLVS-------- 302 Query: 78 QLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWS 137 K T + G L L + L + + + L Sbjct: 303 -----------KIFYLTAKT--IAGTVPDQALTLLREHGLKFSSVMLTAKEKICL----- 344 Query: 138 NQTVDGDISTCVSVAE-----DSQAWPLVTSTND---NCLGSDCPMYKDCFVVKARKKAM 189 N+T++ D C ++ + ++T + S Y+ C ++ Sbjct: 345 NETMECDAEHCPYAKGHFDRVNAALFEMITQEERMDREVIRSYAEKYRVCPFELGLDASL 404 Query: 190 DADVVVVNHHLFLADMVVKESGFGELIPE--ADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 AD ++ +++ V + F + + V + DEAH L D AS + +L Sbjct: 405 FADTIIGDYNYVFDPRVNLKRFFSQTAYDTGRYVFLVDEAHNLVDRASSMYSATLYKEDF 464 Query: 248 LDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA 307 L + K + + ++ L+ C L + + + E GY+ L + Sbjct: 465 LAVKKLVKPYSKKLVRG---LESCNRELLE----LKKRCPEHGYQI----LNDIGVLYLK 513 Query: 308 FLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR- 366 L L T+E + K R +L+ F T + ++ Y + E TS Sbjct: 514 LLQLHTTMETFLEDYKQIPERKEILEFYFALTTFL-----NIADLIDDSYVIYDELTSDG 568 Query: 367 HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL-GIEQAESLLLPSP 425 F + L + A+ K + K S +F SAT+ + ++ L + +++ +PSP Sbjct: 569 RFMVRLYCVHPANNLKLCL-DKGVSTVFFSATIL---PVKYYMEMLSDTDTDQAIYIPSP 624 Query: 426 FDYSRQALLC---VLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 FD ++ ++ V + + R +A +R + + + G + S+ M+R++ E Sbjct: 625 FDQKKRQIMVGVDVSTKYTRRSVKEYKR-VAEYIRHLFKVHPGNYMVFLPSYKMLREVYE 683 Query: 483 QFRAT--MTLPVLLQG----ETSKGQLLQQFVSAGNALLVA--TSSFWEGVDVRGDTL-- 532 Q A + +L Q E + L+ F S N + F EG+D+ GD L Sbjct: 684 QMTAEDCSVMELLCQEQNMKEADREAFLEHFSSQKNVVAFCIMGGIFSEGIDLTGDRLIG 743 Query: 533 SLVIIDKLPFTSPDDPLLKARMEDCRL------RGGDPFDEVQLPDAVITLKQGVGRLIR 586 S+V+ LP + ++ + D F L + + Q GR+IR Sbjct: 744 SVVVGPGLPQVCNERKIMMDYFNTGKRTDTNADSSVDGFKYAYLYPGINKVFQSAGRVIR 803 Query: 587 DADDRGVLVICDNRLVMRPYGATF 610 DD GV+++ D R Y + F Sbjct: 804 TEDDTGVILLLDERFGTGEYNSLF 827 >UniRef50_A8REN5 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REN5_9FIRM Length = 806 Score = 326 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 129/631 (20%), Positives = 229/631 (36%), Gaps = 62/631 (9%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 P + R+ QR++A+AV + I L +A TG GKT + L P L K Sbjct: 208 VFPFPEYRKGQRKLAIAVYKTILDHDILFAQAPTGIGKTISTLFPGL------------K 255 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 A+ + + +K + Y L++L +Q L + + + LL Sbjct: 256 AIGEGKIEKIFYVCAKNITAQVA---------YDALQQLYKQNLHFKSVAITAKDKICLL 306 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD----CFVVKARKKAM 189 + + + + + L+T +D Y C Sbjct: 307 AERNCDPQNCPYAKGYYNRNKNALYELITQ-HDFIDYERLVEYGKKYVVCPFELGLDACE 365 Query: 190 DADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLD 249 +DV++ +++ V + F + + + DEAH L D A + + LS Sbjct: 366 YSDVIIGDYNYVFDPRVYLKRFF--IDKGNYLFLVDEAHNLVDRAREMYSAELSK----- 418 Query: 250 LAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFL 309 +D I K +L K L + R Q E L + A P + Sbjct: 419 --QDFQIIKAYIPKSFAKLHKAHHHLNKQFISLRKQCEEKQL-DFLAQKEAMPFFLQCLE 475 Query: 310 LLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFT 369 L + L + + AL + F+ +R+ E ++ + + Sbjct: 476 KLTNELNEYLEGIHENEMEDALRELYFK-----ALHYQRIAEFYDEHFTTCIQRQKQDVW 530 Query: 370 LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDY 428 + ++ + K ++ +K + IF SATLS + ++ + LG ++ L LPSPF Sbjct: 531 IRQYCMNPSQPIKNIL-RKGRATIFFSATLS---PIDYYLTLLGGNHDSKRLSLPSPFP- 585 Query: 429 SRQALLCVLR--NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF-R 485 + + + + S + +L I NG + S+A M+ L E F + Sbjct: 586 KEHVHVMIANQISTRYRQRSQSIDAICELLYATITQRNGNYILFAPSYAYMKQLYEHFIK 645 Query: 486 ATMTLPVLLQG----ETSKGQLLQQFVSAGN---ALLVATSSFWEGVDVRGDTLSLVIID 538 + + V Q E K L QF + + V F EG+D++GD L VI+ Sbjct: 646 SYPDIDVFYQQQDMTEEEKQTFLAQFQISKHLRLYFCVCGGMFSEGIDLKGDALIGVILV 705 Query: 539 K--LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 LP +P L++ ++ +G + + + Q GRLIR +D+G+L+ Sbjct: 706 GVGLPQINPYSDLIRQHFDEENQQG---YAYAYQYPGMNKILQSAGRLIRSHEDKGILLF 762 Query: 597 CDNRLVMRPYGATFLASLPPAPRTRDIARAV 627 D R Y + L P Sbjct: 763 IDERYTSLHYRGALPSHLHPYTIVHTPQEVR 793 >UniRef50_B7AB83 ATP-dependent DNA helicase, RecQ family n=3 Tax=cellular organisms RepID=B7AB83_THEAQ Length = 1684 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 162/674 (24%), Positives = 263/674 (39%), Gaps = 88/674 (13%) Query: 21 REPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK--KVIISTGSKALQDQ 78 R Q +M V +A+ +G+ L +EA TGTGKT YL PALR K +V I+T +K LQ Q Sbjct: 250 RPAQEEMLRLVDEALREGKRLFLEAPTGTGKTKGYLYPALRLGKDQRVWIATHTKVLQAQ 309 Query: 79 LYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSN 138 L +L +++A Y + AL+K + LC E L + L + L + + Sbjct: 310 LLE-ELKGLARA-GYAVSAALVKSSRDTLCPEALLELFLDARKSEDEELRAAVGVLIHYA 367 Query: 139 QTVDGDISTCVSVAEDSQAWPL----VTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVV 194 + D+ + S+ + V + C CP ++ C K A ++ Sbjct: 368 ALGESDLEALPAYWHFSRGFREAREHVGTNPRRC-RPVCPFFQTCAYQKLLAHRKGAQIL 426 Query: 195 VVNHHLFLADMVVKESGFGELI-------PEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 V N LA + +E P ++ DEAH L D+A++ L+ +L Sbjct: 427 VTNQAYLLAHFLREEPLDAPEEEEAEPKTPPDPHLVVDEAHHLEDVATEALTWVLNHEEL 486 Query: 248 LDLAKDITIAYRTE--LKDTQQLQKCADRLAQSAQDFRLQL------------------- 286 + + L+D+++L++ + + A++ R +L Sbjct: 487 THKLNRLAHPSKESGLLRDSRRLKELSSGARERAKEVREELLHRLRERLEGYTKRMVALV 546 Query: 287 -----GEP------GYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGR------- 328 G+P G + + L P + R L + L + K Sbjct: 547 SQLGTGDPQYGLTLGLSPHWKRLEDWPYLDREERGLMEDLRELREALKTIAEDPRTLMAR 606 Query: 329 ---------SALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVAD 379 LD ER + + + + + ++ + P+ VA Sbjct: 607 DLAPIGEYLRGALDLLHERRRVLFGKEALNSNL---LHVTKLDPVTKSWMHLAQPVEVAS 663 Query: 380 KFKELMAQKPGSWIFTSATLSV-----NDDLHHFTSRLGIEQAESLLLPSPFDYSRQALL 434 K + + S + TSATLSV + LGIE AE LP Y + A L Sbjct: 664 DLKAGLWPRFQSVVLTSATLSVPTEKDPEGFALLKKVLGIEGAEGQRLPPSLPYEK-AHL 722 Query: 435 CVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTL- 490 V R+LP+ + P R L L ++ + R L TS + + L Sbjct: 723 IVPRHLPEARESTLPRFQRMLHQELHTLL-GHTRRSLTLFTSLKRLEAAKKALEGHPHLL 781 Query: 491 --PVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDP 548 + E G++ A + + S+ EGVD L+LV ++++PF P P Sbjct: 782 APLTRREREDVAGRIKANPQEPVAA--LGSRSYMEGVDFP--ALNLVNLERIPFELPS-P 836 Query: 549 LLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADD---RGVLVICDNRLVMRP 605 LL RM+ +G DP+ + LP + + Q GRLIRD + G V+ D +L+ P Sbjct: 837 LLSRRMDWVYEQGLDPWWDYYLPKSALAFAQAFGRLIRDQREGVGDGAFVLWDKKLLNAP 896 Query: 606 YGATFLASLPPAPR 619 Y F LPP Sbjct: 897 YQEVFYRVLPPGVH 910 >UniRef50_B0G3G8 Putative uncharacterized protein n=16 Tax=Bacteria RepID=B0G3G8_9FIRM Length = 805 Score = 323 bits (827), Expect = 2e-86, Method: Composition-based stats. Identities = 125/626 (19%), Positives = 223/626 (35%), Gaps = 78/626 (12%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQD 77 F RE Q+ + +V + I + + L ++A TG GKT A L PA++A + L D Sbjct: 192 FAYREGQKNLVTSVYRTILRKKKLFIQAPTGVGKTIATLFPAVKAVGE--------GLGD 243 Query: 78 QLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWS 137 +++ T+++ + + E L +QAL + + + + Sbjct: 244 KIFYLTAKTITRTVAWQA-------------FETLREQALRMKVIVLTAKDKICFCEETN 290 Query: 138 NQTVDGDISTCVSVAEDSQAWPLVTST---NDNCLGSDCPMYKDCFVVKARKKAMDADVV 194 + + + L+TS+ N L +K C + A+ D + Sbjct: 291 CNPDYCPYAKGHFDRVNDAVYELLTSSDELNREILEEQARKWKVCPYEMSLDVAVWVDAI 350 Query: 195 VVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI 254 + +++ FGE + + DEAH L + Q + S+ L + K + Sbjct: 351 ICDYNYVFDPQAHLRRFFGEGNKGDYLFLIDEAHNLVERGRQMYSASICKEDFLGIKKKV 410 Query: 255 TIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDT 314 + ++L + + + + + E + L + I L L Sbjct: 411 RY-------EDEKLTERLEDCNRGLLAMKRECEE------YKVLNSVSHIYLKLLNLVTE 457 Query: 315 LELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH-FTLALT 373 LE + + R +L+ F + + E Y + E F + L Sbjct: 458 LERFLEECEKEDIREEVLEFYF-----HIRSFMDIHERLDENYVIYSELDGEGKFRVHLF 512 Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYSRQA 432 ++ A E + QK S IF SATL + ++ L ++ ++ SPFD + Sbjct: 513 CVNPAGNLGEFL-QKGNSTIFFSATLL---PITYYKKLLSTGKEDYAIYAESPFDVEHRL 568 Query: 433 LLC---VLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT 489 L+ V + N+ R A L + G + S+ + D+ E F Sbjct: 569 LMVGGDVSTKYTRRNEEMYQRY-ARYLWKLANGKKGNYLVFFPSYRFLEDVYEAFEKIQE 627 Query: 490 LPVLL-----------------QGETSKGQLLQQFVSAGNALLVA----TSSFWEGVDVR 528 L E + + L F L+ F EG+D+ Sbjct: 628 KEELEAFPALGHRITCVTQSQSMSEKGREEFLNTFEEERKESLLGFCVMGGIFSEGIDLT 687 Query: 529 GDTLSLVIIDK--LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIR 586 D L +I LP + +LK + G FD L + + Q GR+IR Sbjct: 688 EDKLIGAVIVGTGLPQVCREREILKDYFD---QHGQRGFDYAYLYPGMNKVLQAAGRVIR 744 Query: 587 DADDRGVLVICDNRLVMRPYGATFLA 612 +DRGV+++ D+R R Y TF Sbjct: 745 TDEDRGVILLLDDRFFDRRYQETFPR 770 >UniRef50_C1D0X6 Putative ATP-dependent DNA helicase n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0X6_DEIDV Length = 1683 Score = 320 bits (821), Expect = 9e-86, Method: Composition-based stats. Identities = 179/725 (24%), Positives = 284/725 (39%), Gaps = 118/725 (16%) Query: 7 PDGQLAKAIPGF--KPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---R 61 +G+L + + PR Q +MA +V+ + LVVEA TGTGKT AYL PAL Sbjct: 230 SEGRLPQQVSDMLPSPRPGQLKMAESVSATLSGPGRLVVEAPTGTGKTRAYLYPALLRGE 289 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 K V+IST +K LQ+Q+ ++ + A + V LKG+SNY+C ERL Q L Sbjct: 290 PGKPVVISTHTKQLQNQIV-KEAQHLKDA-GFKVRVVALKGQSNYICPERL-QLLLTRRF 346 Query: 122 LPVQILSD--------------------------------------VILLRSWSNQTVDG 143 P ++ V LL + G Sbjct: 347 RPDEVPEADQYEANEKDLSAGVETASDVAEDQRPGRLIMLPGQARAVALLTLHAQAGEYG 406 Query: 144 DIS-TCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFL 202 + + ++ + + +VTST CP C + + ADVVVVNH L L Sbjct: 407 ALPPSALTRSPEYLQAKIVTSTVAKRCRDACPFSTCCSYHRTQALVPQADVVVVNHALLL 466 Query: 203 ADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTEL 262 + + G + D ++ DEAH L D A Q + S +L +A++ E Sbjct: 467 RN---QLGGLEQENLPFDRVVVDEAHDLQDAAESALRQEIGSDAILSVAREFLRRTHGES 523 Query: 263 KDTQQLQKCADRLAQ---------------------------SAQDFRLQLGEP----GY 291 + A R+AQ + Q F +Q G+ G+ Sbjct: 524 AGLLPSIEKAARVAQDANLATLSQKAATAFDVLVARVDTWQAALQAFAMQFGQGSEAFGF 583 Query: 292 RGNLRELL----ANPQIQRAFLLLDDTLELCYDVAKLSLGRSAL---LDAAFERATLYRT 344 + + L + RA L +L+ C RS+ L+A R Sbjct: 584 QAAVDPLPMQSAEWRAVTRASEELTSSLKYCAGFIPSLAQRSSYQMDLEALLARLNDQID 643 Query: 345 RLKRLKEINQPG-YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVND 403 L L + PG + Y ++ PL ++ +E + +K S +FTSATL V Sbjct: 644 TLGVLLARSLPGAHVYAVTANGDSASIWAVPLWLSSVLEE-LWKKTSSLVFTSATLRVPG 702 Query: 404 -----------DLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQL 452 D F L + ++ ++LP Y + + + +LP + P + + Sbjct: 703 TWDAKGSGDVADFGVFERDLALPESSYMVLPPVLPYDK-GYVLLTSHLPLVHHPDFSGLV 761 Query: 453 AAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGN 512 + ++ + + T++ +R + + V + +Q G Sbjct: 762 GQEIDNLVTQTPNQALHIFTANERLRRASRHIKKRHLNSV----RDGTQRTVQDLHGDGE 817 Query: 513 ALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPD 572 + ++ F +GVD+R L+LV +DK PF P D +L+A+ D ++ + LP Sbjct: 818 WHALGSAGFLQGVDIR--DLTLVSLDKTPFPIP-DLVLEAQRRDVND-FETYWNTLYLPR 873 Query: 573 AVITLKQGVGRLIRDADDR-----GVLVICDNRLVMRPYGATFLASLP-PAPRTRDIARA 626 AV+ QG GRL+R +DR G V+ D RL Y FL +LP PA R Sbjct: 874 AVLKFVQGFGRLVR--NDREGLPAGAFVVWDKRLAFAHYQDRFLGALPIPAGNVRRARNR 931 Query: 627 VRFLA 631 F A Sbjct: 932 EDFYA 936 >UniRef50_B5XKK7 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=33 Tax=Streptococcus RepID=B5XKK7_STRPZ Length = 833 Score = 318 bits (815), Expect = 5e-85, Method: Composition-based stats. Identities = 132/615 (21%), Positives = 245/615 (39%), Gaps = 64/615 (10%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL--RAKKKVI 67 + A+ G + R Q Q A + + +G +EA TG GKTY YL P L + ++I Sbjct: 250 PINMALLGLEERPKQTQFAQLIDEDYHQGVASFIEAQTGIGKTYGYLLPLLAKEDQNQII 309 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 +S +K LQDQL + ++ + + ++ LKG +NYL L+ +L D + Sbjct: 310 VSVPTKLLQDQLMAGEVAAIQE--QFHIACHSLKGPANYLKLDSFAD-SLDQNDQNRLVN 366 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 + L W +T GD+ + + + D + Y F + +K Sbjct: 367 RYKMQLLVWLLETKTGDLDEIKQKQRFAAYFEQLKHDGD--IKQSSEFYDYDFWRVSYEK 424 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 A A +++ NH FL V + F V++FDEA +L Q + Sbjct: 425 AKTARLLITNHAYFL-HRVQDDKDFAR----NKVLVFDEAQKLMLQLDQLSRHQFNLTVF 479 Query: 248 LDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA 307 L + L + + L+ + L Q + D+ Sbjct: 480 LQTIQAKLSNPLPLL-EKRLLESLSFELGQVSSDYYQ----------------------- 515 Query: 308 FLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH 367 + +L +D ++++ L A ++ + YW + Sbjct: 516 ----NKEHQLAHDWSRIAGYAKELTGADYQELQAF---------FATSDGDYWLSSEKQE 562 Query: 368 FTLALTPLSVAD----KFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLP 423 +T L+ A F++L+ + ++ F SATL+++ ++ LG E+ ++ Sbjct: 563 EK-RVTYLNSASKAFIHFQQLLPETVKTY-FVSATLTISSEVT-LADLLGFEEYLYHVIE 619 Query: 424 SPFDYSRQALLCVLRNLP---QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL 480 D + L+ V + P + + +A + + + +L S + + Sbjct: 620 K--DKKQDQLVLVDQEAPIVTEVSDQIYVEAIAKRIESL-KQEGSPILVLFNSKKHLLLV 676 Query: 481 AEQFRATMTLPVLLQGETSKG-QLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDK 539 ++ +P L Q + + ++F +L+ SFWEGVD + +I + Sbjct: 677 SDYL-DQWQVPHLAQEKNGTAYNIKKRFDQGEQTILLGLGSFWEGVDFIQADRMITLIAR 735 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LPF +P+D +K +G +PF + LP ++ LKQ +GR +R D + V++I D Sbjct: 736 LPFDNPEDFFVKKMSHYLLEKGKNPFRDYFLPMTILRLKQAIGRTMRRQDQKSVVIILDR 795 Query: 600 RLVMRPYGATFLASL 614 RL+ + YG L L Sbjct: 796 RLLTKSYGQVILEGL 810 >UniRef50_C9B220 DEAD_2 helicase n=4 Tax=Enterococcus RepID=C9B220_ENTCA Length = 832 Score = 314 bits (805), Expect = 6e-84, Method: Composition-based stats. Identities = 123/650 (18%), Positives = 227/650 (34%), Gaps = 75/650 (11%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 + P R+ QR++A A + ++ G+ L EA TGTGKT + L PAL K Sbjct: 217 SFPFETFRKGQRELAAAAYKTLKNGKRLFAEAPTGTGKTMSTLFPAL------------K 264 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 L ++ R +K + L +L + + + L Sbjct: 265 VLGEEGADRVFYLTAKTITRQVA---------EDALSKLADNGSETKSVTITAKDKICFL 315 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTN---DNCLGSDCPMYKDCFVVKARKKAMD 190 + + + W L+ N + + + C + ++ Sbjct: 316 DERNCTPEHCPYAQGYYNRINEALWDLLHHENQITREVIETYGMKHTVCPFELSLDVSVF 375 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 DV++ +++ D V F E E + DEAH L + + + + ++ + +L Sbjct: 376 CDVIIGDYNYLF-DPTVYLRRFFEEPDEEYFFLVDEAHNLVNRSKEMYSATILRQPFKEL 434 Query: 251 AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLL 310 K KD Q+L++ +R+ + E G+ + + + + Sbjct: 435 KK-------KLPKDQQKLKRALNRVDKEFAALAQLAKEEGWSYHHQAAPHETMVNQ-LYK 486 Query: 311 LDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTL 370 L + ++ + +L FE ++ E Y E L Sbjct: 487 LAELMKEWLPANPEHELQEEVLQVYFE-----ANHYLKISEFYDDHYETTVEIDRYDIKL 541 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYS 429 + A + ++ K + + SA+ + L ++ LG ++A LPSPFD Sbjct: 542 RQFCIEPAPFLESVL-DKGKASLLFSASFT---PLSYYQEVLGGGDEALRYRLPSPFDPK 597 Query: 430 RQALLCV-LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 Q + + S + ++ + A G + S+ + D+A F Sbjct: 598 NQGIFIADYIQTTYRQREASIPAIVDAIQQMTAAKAGNYMVFFPSYRYLDDVAAAFSQQA 657 Query: 489 T-LPVLLQG----ETSKGQLLQQFVSAGN---------------------ALLVATSSFW 522 + VL+QG E + L QF S + A V F Sbjct: 658 PEVEVLIQGTAMNEAEREAFLAQFQSFDSQQSSLLDKSQDEPKSQPKTLVAFCVLGGIFS 717 Query: 523 EGVDVRGDTLSL--VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQG 580 EG+D++GD L V+ LP + + L++ ++ + G F + + Q Sbjct: 718 EGIDLKGDRLIGAAVVGVGLPQINHEQELIREYYDEKKAAG---FAYAYQLPGMNKVLQA 774 Query: 581 VGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 GR+IRD DRGV+++ D R Y F A + R + L Sbjct: 775 AGRVIRDVSDRGVVLLLDQRFRTPRYQELFPLHWQHALQIRRPQELSKAL 824 >UniRef50_Q8XL45 Probable helicase protein n=7 Tax=Clostridium perfringens RepID=Q8XL45_CLOPE Length = 781 Score = 313 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 120/626 (19%), Positives = 219/626 (34%), Gaps = 62/626 (9%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK 63 DF D P R+ QR++A+ V ++I +G+ EA TG GKT + L PA++ Sbjct: 176 DFRNDSIENFNFPFKSYRKGQRELAIRVYKSITEGKKCFAEAPTGIGKTMSTLFPAVK-- 233 Query: 64 KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP 123 + G+K Q Y T + T + KG L + Sbjct: 234 -----ALGAKETQKIFYITAKTTTREIANNTLRIMREKG--------------LNLRSVN 274 Query: 124 VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND---NCLGSDCPMYKDCF 180 + + + + + + + Y C Sbjct: 275 ITAKEKCCKMEEKKCIPEYCPYANGYFDRVNIALKEALRHKEEYDLEYINKLSKEYNICP 334 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 + + + DVV+ +++ D G E + ++ DEAH L D + Sbjct: 335 FEFSLELSNFCDVVICDYNYIF-DPQASLKGILEGKAKDYTILIDEAHNLLDRGRSMYSS 393 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 + L L ++ + + DR + + R L + L+ Sbjct: 394 KIFKDDFLKLKREFKSKDKG-------IYNSLDRANKYLIEKRKVLEN----LETKSLVE 442 Query: 301 NPQIQRAFLLLDDTLELC-YDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359 + + +L LE +K S S LL+ F + ++ Sbjct: 443 KEEPSDLYGILRGFLEKVDIYESKSSEENSNLLELYFNVYEFL-----NICGYYGEDFTT 497 Query: 360 WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES 419 Y+ + L++ L + K +M + S I SATL + +F G ++ + Sbjct: 498 LYKLDGNNLELSINCLDPSRILKSIM-NRFKSVIIFSATLL---PMEYFKELYGAQEGDY 553 Query: 420 -LLLPSPFDYSRQALLCVLR-NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 + L SPFDY + + + +N+ + ++ + ++ G + S+ M Sbjct: 554 SVNLTSPFDYKNKLTIVGKDVSTTYSNRKRTLPKIVNYIIECAKSKRGNYLVFFPSYEYM 613 Query: 478 RDLAEQFRAT-MTLPVLLQG----ETSKGQLLQQFVSAGN----ALLVATSSFWEGVDVR 528 + E+ + + ++ QG E K + L F G L V F EG+D+ Sbjct: 614 WMVHEEIKKREVDFSLVAQGDHMNEEEKEEFLSLFKEGGEKTHLGLAVLGGHFSEGIDLT 673 Query: 529 GDTLSLVII--DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIR 586 D L VII +P + +K E G + FD + +I + Q GR IR Sbjct: 674 LDKLIGVIIIGVGMPKICLERESIK---EYYNSIGKNGFDYAYVYPGIIKVLQAAGRCIR 730 Query: 587 DADDRGVLVICDNRLVMRPYGATFLA 612 D+GV+++ D+R Y + Sbjct: 731 TEKDKGVVLLLDDRYFTNKYKSLLPR 756 >UniRef50_C9XQW7 Putative exonuclease n=9 Tax=Clostridium RepID=C9XQW7_CLODC Length = 1039 Score = 313 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 133/665 (20%), Positives = 247/665 (37%), Gaps = 94/665 (14%) Query: 18 FKPREPQRQMAVAVTQAIE----KGQPLVVEAGTGTGKTYAYLAPALR----AKKKVIIS 69 ++ R Q ++ + + + + +EA TG GK+ YL PA+ KK+++IS Sbjct: 264 YEYRPGQYELTKTIRELFRNSEDEEKIACIEAPTGIGKSVGYLLPAILEARINKKRLLIS 323 Query: 70 TGSKALQDQLYSRDLPTVSKALKYTGNVAL--LKGRSNYLCLERLEQQALAGGDLPVQ-- 125 T +K LQ QL ++D+P V +L G V+ +KG++NY+C++RLE Sbjct: 324 TDTKELQIQLINKDIPNVLDSLGLNGKVSYGYIKGKNNYICIDRLEAYIDDYESQNPTKG 383 Query: 126 ILSDVILLRSWSNQTVDGDISTCVSVAED-----SQAWPLVTSTNDNCLGSDCPMYKDCF 180 + +I L+ GDI + D S V+ + C C KDC Sbjct: 384 EILSLIFLKRLVEGGKYGDIEEINYLVFDNFKEISTHLRNVSCDPNMCRPKKCK--KDCL 441 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ---- 236 ++ + + VVNH L E +I + + ++ + Sbjct: 442 YKNRIEELKEEHITVVNHSLLAKWPYKDEKPLENIIVDEAHNLTEKGYDFFSSIINSKSL 501 Query: 237 -YFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCAD----------RLAQSAQDFRLQ 285 Y Q + + + + I Y ++ + K + ++A+S + Sbjct: 502 RYLLQEIYPYEFIQNSSFIYKKYSRNMRKIKAFDKFYNVLKIGREDKQKIARSINLIIEE 561 Query: 286 LGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTR 345 + GN E + L E+ + K + A E+ L + Sbjct: 562 IDSILKFGNCNEYNNVSNYNLRWELNLQIDEIVGKLKKDGIDTEISYRAYSEKIKLSCEK 621 Query: 346 LK---------------------------------------------RLKEINQPGYSYW 360 + L+ + Y+ Sbjct: 622 IIKNLVSIIIIIYRNIDDDSIDKEADIYKFGKAKTRDLEDIKIIFEIFLEYDEKDDYARI 681 Query: 361 YECTSR--HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE 418 E F + PL +AD F+E + + IF SATLS+++ + +F + LGI++ + Sbjct: 682 VEIDKNYNDFEFRVVPLKIADLFEENILSQLEKGIFLSATLSLSESMSYFKNTLGIDRVK 741 Query: 419 SL--LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 ++ ++ FDY + + ++ + +++ ++ I + G L S Sbjct: 742 NVEKIIEPIFDYKNRVSVVGFSDICEYRNSEFPNEMSKIISNISKITEGHTLALFNSKDR 801 Query: 477 MRDLAEQFRATM---TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLS 533 E + + L + + + L +++ + +EGVD+ GD L Sbjct: 802 QEKTYEILKKYLHSFNLEIYADKKGIRH--LNDL--NRKCVVLGSKGCFEGVDIPGDGLV 857 Query: 534 LVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGV 593 V +DKLP +P DPL M + G + + P I +KQ +GR++R D G Sbjct: 858 CVTLDKLPNLNPKDPLYFTIM----KKYGIDYYTINYPQMTIKVKQAMGRILRSKYDYGC 913 Query: 594 LVICD 598 VI D Sbjct: 914 FVIFD 918 >UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus thermophilus RepID=Q746C7_THET2 Length = 1649 Score = 311 bits (798), Expect = 4e-83, Method: Composition-based stats. Identities = 161/666 (24%), Positives = 267/666 (40%), Gaps = 82/666 (12%) Query: 19 KPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQ 78 KPR QR+M V +A+ + + L++EA TGTGKT YL P L +K ++T +K LQ Q Sbjct: 243 KPRPAQRRMFQLVEEALSREEILLLEAPTGTGKTKGYLYPVLHQRKPTWVATHTKVLQAQ 302 Query: 79 LYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD--LPVQILSDVILLRSW 136 K Y AL+K + LC +RL + L P + + I + Sbjct: 303 AMEELRAVAQK--GYQVRAALVKSPQDTLCPDRLLEAFLREARSGKPGEDVGAAIAVLLH 360 Query: 137 SNQTVDGDISTCVSVAEDSQAWPLVT----STNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 D+ + + + V + D C +CP C ++ +A Sbjct: 361 YAAQRGHDLEALPAYWHFLEGFREVRGRVGTNPDRC-RRECPFASACAYQAILRRREEAQ 419 Query: 193 VVVVNHHLFLADMVVKESGFGELIPEAD-VMIFDEAHQLPDIASQYFGQSLSSRQLLDLA 251 ++V N L ++ +++ +PEA ++ DEAH L D+A++ + L L Sbjct: 420 ILVTNQAYLLHSLLGEKA-----LPEARPALVLDEAHHLEDVATEALTLKVDGEGLRHLL 474 Query: 252 ---------------KDITIAYRTELKDTQQ------LQKCADRLAQSAQDF-----RLQ 285 +D + +L+ + + + K + L ++ R Sbjct: 475 EALANPSKRSGLLQERDYLKSLEDDLRASAETLAEEAVPKALEALKAYSERMERFLKRRG 534 Query: 286 LGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA----------- 334 +G P + L + + + LL + L + L+ G LLDA Sbjct: 535 VGSPEHGLTLPLEPSWTRDEEYPLLDREERHLIQSLEALAKGLEGLLDAHPPPWPLLLRE 594 Query: 335 -------AFERATLYRTRLKRLK-EINQPGYSYWYECTSRHFTLALTPLSVADKFKELMA 386 + L+ R + LK E ++ + + + ++ P+ VA + +E + Sbjct: 595 IRPLLQELRQAIRLFLRRKRVLKGEADEALHLTRLDPVTGTWSHLAEPIEVAAELEEKLW 654 Query: 387 QKPGSWIFTSATLSV-----NDDLHHFTSRLGI-EQAESLLLPSPFDYSRQALLCVLRNL 440 + TSATL+V + LG+ QA + LP Y +A L V R+L Sbjct: 655 PAFRGVVLTSATLAVPTETDPEGFAFLQRALGLPPQARAERLPPSLPY-HRAHLLVPRHL 713 Query: 441 PQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPV-LLQG 496 P+ + P R L LR ++ R L TS + + + L L + Sbjct: 714 PEARESTLPRFQRLLHRELRLVLGQVP-RTLTLFTSLSRLEAAKKALEDLPHLRAPLTRR 772 Query: 497 ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMED 556 E + + + SF EGVD+ L +V +++LPF P PLLK RM Sbjct: 773 EREDTVRFARSNPTEPLAALGSRSFMEGVDLP--HLRVVNLERLPFPYPS-PLLKRRMAL 829 Query: 557 CRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR-----GVLVICDNRLVMRPYGATFL 611 RG DP+++ LP AV++ Q GRLIR DDR G ++ D +L+ Y F Sbjct: 830 AYERGLDPWEDYYLPKAVLSFVQAFGRLIR--DDRQVAGDGAFILWDKKLLHADYQELFY 887 Query: 612 ASLPPA 617 +LP Sbjct: 888 RALPDG 893 Score = 54.3 bits (129), Expect = 1e-05, Method: Composition-based stats. Identities = 59/275 (21%), Positives = 101/275 (36%), Gaps = 30/275 (10%) Query: 307 AFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR 366 A L E + ++ G+ LL A ER K L+E+ + G Sbjct: 1031 ALHGLMSWGEQASVLDEVRAGQVRLLYLAPERINRSEAVRKALRELREAGKLVRVVFDEA 1090 Query: 367 H------FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL 420 H + L V + +EL F +ATL+ + GI +A + Sbjct: 1091 HCLLEWGYDFRPDYLKVLEWLRELGLPMS----FFTATLTPEER-ARLKEVAGIPEAVEV 1145 Query: 421 LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL 480 LP F L V+R P + G +LA L + E G + TS A L Sbjct: 1146 -LPETFHRPN--LRFVVRQAP--GEVGKFDRLAQALLWV-EKTGGSAIVYATSRAETERL 1199 Query: 481 A---EQFRATMTLPVLLQGETS--KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 A ++ ++ + G + ++ ++F+ + ++VAT++F GVD L V Sbjct: 1200 AWALDRLFPSLGVEAYHAGLGPVLRKEVQERFMRGESRVVVATTAFGMGVDKPDVRL--V 1257 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQL 570 + + P + L+ + G D + L Sbjct: 1258 VHWRPPLS------LEEYAQQAGRAGRDGKEAYAL 1286 >UniRef50_Q58352 Probable ATP-dependent helicase MJ0942 n=10 Tax=Methanococcales RepID=Y942_METJA Length = 651 Score = 311 bits (798), Expect = 4e-83, Method: Composition-based stats. Identities = 153/649 (23%), Positives = 260/649 (40%), Gaps = 95/649 (14%) Query: 9 GQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---RAKKK 65 G + + P K REPQ++M + + + I+ + L+VEA TG GKT YL PAL +K+ Sbjct: 5 GYIKEKFPYPKVREPQKRMMLKIYECIKNKRNLIVEAPTGVGKTLGYLIPALYFAERRKR 64 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ 125 V+I T + Q ++Y DL ++ L VA L G+SN++C + + Sbjct: 65 VLILTETIDQQVRIYE-DLSSLRHNL----KVAFLMGKSNFICKSK-----GGKANRLYC 114 Query: 126 ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKAR 185 L+ L R I C + + V CP Y C KA+ Sbjct: 115 QLNKKCLYRPNKRP-----ICYCGTKKQPVNLGDKV--------IYYCP-YCTCEYQKAK 160 Query: 186 KKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSR 245 +++ AD+VV+N+ +F E + D++I DEAH+L ++ Sbjct: 161 IESILADIVVMNNSMF-----YYAKEDIEAKRDIDIIICDEAHKLESSIRNTSTIIINPE 215 Query: 246 QLLDLAKDITIAYRTEL------KDTQQLQKCADRLA------------------QSAQD 281 ++ K + I Y + + + ++ ++ Sbjct: 216 LPINRLKYMAIHYAPNILKKRLDIGDENFWEIIEKYLTSRGINIDICKETIIFDGENLSS 275 Query: 282 FRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSAL----LDAAFE 337 ++ + L I+ L ++ E+ + + + AL LD + Sbjct: 276 WKYKTELAVLGAILDAYYQINNIKNKILRFNENEEIDREELRFEIDNKALIAIELDFIHK 335 Query: 338 R------ATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGS 391 + + +K L+ IN+ Y +L P+ V+ KEL Sbjct: 336 KKLSDLYLLEFIENIKNLRYINENYVVY-----RSGNSLLCEPVFVSSHLKELYGNAV-- 388 Query: 392 WIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQ 451 I SAT+ +L + G+++AE L+L SPF +R+ ++ + + + + Sbjct: 389 VIHCSATI---GNLKMHALKTGLDKAEFLILESPFPKNRKKIIALKDGVDMKYERKDREK 445 Query: 452 LAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM--------TLPVLLQGETSKG-- 501 L I+EA NG +L S + + + + + V QG K Sbjct: 446 ANKNLLKILEAINGNSLVLFKSFEDLDSFYKYLKREITKTNIKNKNIHVYEQGMDGKEAK 505 Query: 502 QLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARM---EDCR 558 +L ++F G +L+AT F EGVD+ G+ L V+ID LPF P +L+ + E + Sbjct: 506 ELKERFEKIG-GILLATGRFAEGVDIPGEALVGVVIDSLPFPVPTPLILREQKILEERFK 564 Query: 559 LRG-----GDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 +RG F TL Q +GRLIR +D GV+VI D R Sbjct: 565 IRGVRDAHWRAFLMTSFDRMARTLVQMIGRLIRTENDYGVVVIQDKRFA 613 >UniRef50_Q04L99 DnaQ family exonuclease/DinG family helicase, putative n=28 Tax=Streptococcus RepID=Q04L99_STRP2 Length = 816 Score = 311 bits (797), Expect = 5e-83, Method: Composition-based stats. Identities = 129/633 (20%), Positives = 253/633 (39%), Gaps = 66/633 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 ++ DF+ + L + RE Q A V ++ +++A TG GKTY YL PAL Sbjct: 230 LSQDFSKNISL----LNLEVREEQESFAKEVGLLLKDEPVSLIQAPTGIGKTYGYLLPAL 285 Query: 61 RAKK--KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALA 118 K ++++S +K LQ+Q+ + + + + ++ LKG NYL L+ +L Sbjct: 286 SQSKERQIVLSVPTKILQNQIMEEEGKRLKEV--FHTDIHSLKGPQNYLKLDAFYH-SLQ 342 Query: 119 GGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 D + + W +T GD+ + + + L S + Sbjct: 343 ENDENRLFRRFKMQVLVWLTETETGDLDEIGQLYRYQHFLADLRHNGN--LSSQSLFVTE 400 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYF 238 F +++++A ++V NH V ++I DE ++ Sbjct: 401 DFWKRSQERAETCKLLVTNHAYL-----VTRLEDNPEFVSDRLLIIDEVQKILLALENLL 455 Query: 239 GQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLREL 298 ++ + ++DL + + R+ +S + L L E G R+ Sbjct: 456 QETYDIQSIIDLIDKALVGEEN---------RVQQRILESIRFECLYLIEQFQSGKSRKN 506 Query: 299 LANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYS 358 + + LD+ + ++ + ++ Sbjct: 507 ILDS--------LDNLHQYFSEL----------------EVEGFDELVRYFTAEGD---- 538 Query: 359 YWYECTS-RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA 417 YW E T + ++ + + + SATL ++ + LG +A Sbjct: 539 YWLEVTETSQKKIQISSTKSGRTLLSSLLPESCQVLGVSATLEISQRVS-LADLLGYPEA 597 Query: 418 ESLLLPSPFDYSRQALLCVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSH 474 + + + S ++ + ++++ P + AR++AA+L I +A +L T+ Sbjct: 598 KFVKIES--RGKQEQEVVMVKDFPLVTETSLEVYAREVAALLVEI-QAFQQPILVLFTAK 654 Query: 475 AMMRDLAEQFRATMTLPVLLQGETSK-GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLS 533 M+ +++ T+ L Q + QL ++F +L+ +SFWEGVD Sbjct: 655 DMLLAVSDLL----TVSHLAQYKNGDVHQLKKRFEKGEQQILLGAASFWEGVDFSSHPFV 710 Query: 534 LVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGV 593 + ++ +LPF +P +PL K ++ G + F + QLP A+I LKQ +GR +R R + Sbjct: 711 IQVVPRLPFQNPQEPLTKKINQELNQEGKNAFYDYQLPMAIIRLKQALGRSMRREYQRSL 770 Query: 594 LVICDNRLVMRPYGATFLASLPPAPRTRDIARA 626 +I D R++ + YG +ASL + I+R+ Sbjct: 771 TLILDRRIIGKRYGKQIVASLAEEATVKTISRS 803 >UniRef50_B0S2X2 ATP dependent helicase n=2 Tax=Finegoldia magna RepID=B0S2X2_FINM2 Length = 748 Score = 311 bits (796), Expect = 6e-83, Method: Composition-based stats. Identities = 138/612 (22%), Positives = 243/612 (39%), Gaps = 61/612 (9%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 + P R Q+ ++ V A ++G L+VEA TG GKT + L P+++A Sbjct: 186 SFPYPAFRAGQKYLSQNVYSATKQGVDLMVEAATGIGKTISTLFPSIKAMG--------- 236 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 DL K T L K ++ L L + Q+ L + + + V + Sbjct: 237 --------EDL--TDKIFYLTAKSTLKKACNDQLYLMK--QKGLIIKSVEIIAKNKVCIN 284 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTN---DNCLGSDCPMYKDCFVVKARKKAMD 190 D + + + ++ + + + + Y+ C + + Sbjct: 285 NEVKCNPNDCEFAKGHYDRVNKCILDMLENGDIIVEEIIKKYAFKYRVCPLELELDLSNF 344 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 D+V+ +++ D VV F E+ ++ DEAH L + SLS QL+D Sbjct: 345 CDIVICDYNYVF-DPVVYLKRFFEVPYLRMSLLVDEAHNLVSRGRDMYSYSLSFNQLMDC 403 Query: 251 AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLL 310 D + + ELK + L+K A ++ A LG+P N E L+ I Sbjct: 404 C-DELVDEKKELKIKRNLKKIAQQIKDEA------LGKPV---NTYEDLSVDLIDYCVRC 453 Query: 311 LDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTL 370 + + + K +LD FE + + + + + + Sbjct: 454 KESMTKFLVE-EKDKPYYDKVLDVYFEINKFLK-----ISDFYDDSFVTLIKSENDDVIY 507 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSR 430 + L+ + FK L+ +K S +F SATLS + +F LG+E+ ++ L SPF Sbjct: 508 NIMCLNTHNIFKNLL-KKCKSNVFFSATLS---PMTYFADVLGLEKFYNIRLESPFPKEN 563 Query: 431 QALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTL 490 + + + ++ + ++A +LR I E G + S++ + + E Sbjct: 564 LKVNHINISTRFKDREDTKYKIAEILRKINE-KPGNKLIFFPSYSYLESVYEI----CDF 618 Query: 491 PVLLQG----ETSKGQLLQQFVSAGN--ALLVATSSFWEGVDVRGDTLSLVII--DKLPF 542 +L Q + + + L QF ++ N A V F EGVD+ GD L+ V I LP Sbjct: 619 DILTQERTLTDMERLEFLSQFTTSSNIMAFCVLGGVFSEGVDLSGDRLNTVGIISVGLPG 678 Query: 543 TSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 S ++ L+K ++ G + FD + + + Q GRLIR D G L + D+R Sbjct: 679 ISVENDLIKKYFDE---NGKNGFDYAYVYPGMNKVHQAGGRLIRTDTDTGELFLIDDRFD 735 Query: 603 MRPYGATFLASL 614 PY + S Sbjct: 736 SYPYKSLLPNSW 747 >UniRef50_C0ESD4 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ESD4_9FIRM Length = 816 Score = 311 bits (796), Expect = 6e-83, Method: Composition-based stats. Identities = 125/605 (20%), Positives = 225/605 (37%), Gaps = 62/605 (10%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQD 77 F R Q++M QA+E + + ++A TG GKT + L PAL K L Sbjct: 214 FSFRPGQKKMTAIAYQAMENKKHIFLQAPTGVGKTISTLYPAL------------KELGA 261 Query: 78 QLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWS 137 + +K + T +K L++Q L + + + + Sbjct: 262 EKAENIFYLTAKTITRTVAEDTIK---------LLKKQGLFLSAVTITAKEKICIQEEMQ 312 Query: 138 NQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM---YKDCFVVKARKKAMDADVV 194 + + + + L+T+ + + YK C + + A+ AD + Sbjct: 313 CNPESCERAKGHFDRINEALYALLTAECEISRENILLFAEKYKVCPYELSFEAAVWADCI 372 Query: 195 VVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI 254 + +++ D V E ++ + DEAH L D A + + ++ K Sbjct: 373 ICDYNYVF-DPHVNRKSLIEGSLRQNIYLIDEAHNLLDRAREMYSADIAKSDFKVPKKYF 431 Query: 255 TIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDT 314 R K +L + AQD G R L E + F L+ Sbjct: 432 KDRNRFLFKKLGNCVMALRKLEKQAQD--------GTRFRLHE-NVDAMYFPIFHLIGPL 482 Query: 315 LELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTP 374 E D S R +++ F+ T + + GY + E R F L L Sbjct: 483 EEYLADHDNFS-EREEIVEFYFK-----LTHFYMMLDSMDSGYEIYSEKRGRDFLLRLFC 536 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALL 434 ++ +DK +E + S IF SATL + ++ LG + E+ + SPF + L Sbjct: 537 VNPSDKLEEYIENSRSS-IFFSATLL---PVQYYRQLLGGNRFEAYQIASPFAKENRLLA 592 Query: 435 CVLRNLPQTNQPGSARQ--LAAMLRPIIEANNGRCFMLCTSHAMMRDLA---EQFRATMT 489 + + G + L +E G + S+ M+ + EQ + Sbjct: 593 ITEDVTSRYTRRGEWEYGKMIRYLELCLEKKAGNYMIFFPSYEMLTSVYGMAEQSNLALV 652 Query: 490 LPVLLQG----ETSKGQLLQQFVSAGN----ALLVATSSFWEGVDVRGDTLSLVIIDK-- 539 +++Q E S+ L++F V S F EG+D+ G++L V+I Sbjct: 653 SEIIVQEPSMEERSREAFLEKFREQSGKPLIGFCVLGSIFSEGIDLTGNSLIGVLIVGTG 712 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LP + +++A + + +G +D + + Q GR+IR A+D G +++ D Sbjct: 713 LPQICNEREVIRAYFDRQQKKG---YDYAYRYPGMNKVLQAAGRVIRTAEDVGTILLMDE 769 Query: 600 RLVMR 604 R + R Sbjct: 770 RFLER 774 >UniRef50_C5U5Q1 Helicase domain protein n=1 Tax=Methanocaldococcus infernus ME RepID=C5U5Q1_9EURY Length = 630 Score = 310 bits (794), Expect = 1e-82, Method: Composition-based stats. Identities = 142/628 (22%), Positives = 247/628 (39%), Gaps = 80/628 (12%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---RAKKKVI 67 ++K P REPQ++M +++ +I + L+VEA TG GKT AYL PA+ K+++ Sbjct: 7 VSKKFPYSTIREPQKKMMLSIYNSIINRKHLIVEAPTGVGKTLAYLLPAIYFAEQGKRIL 66 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 I T + Q +++ +++ L + V+ L G NY C + L ++A Sbjct: 67 ILTETIDQQKRIFDE----LNR-LNHNLKVSYLMGIRNYTC-KTLNRKANR--------- 111 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 + ++ + C + L CP+ C K + + Sbjct: 112 --IFCKINYRCRYRPNKKPICFCGMRKIKVGSL----------YYCPL-CVCEYKKCKLE 158 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 ++ +++VV+N+ +F E + D++I DEAH+L D + ++ L Sbjct: 159 SLVSNIVVMNNTMFFYS--------KEDCRDFDIIIVDEAHKLEDSIRRALTIEINPDTL 210 Query: 248 LDLAKDITIAYRTE-LKDTQQLQKCADRLAQSAQDFRLQL---------GEPGYRGNLRE 297 ++ K + Y L+ D L + L GE NL + Sbjct: 211 IERLKYMAFHYSPSVLRKRMTHDNVFDLLKNYLDGVDIDLYRRALIYDDGELDSFYNLTK 270 Query: 298 LLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGY 357 + + + + L+ ++ + D F+ L + + + Sbjct: 271 SILSSILNAYYKLIKLKEKILEFEENEEIKEEIKFDLDFKDICLVELNFINKVKSSDLLF 330 Query: 358 SYWYECTSR-----HFTLALT-------PLSVADKFKELMAQKPGSWIFTSATLSVNDDL 405 + ++E S+ ++ L + P+ V + K L I SAT+ Sbjct: 331 NEFFENISKLRLSDNYVLYRSGNSLIYEPVFVNNYLKTLYGNAV--VIHCSATI---GSF 385 Query: 406 HHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNG 465 R G+E A L L SPF R+ ++ + + + ++ ++EA N Sbjct: 386 KSHAHRTGLEDANFLRLESPFPMDRREIIALKDGANMKYEVKDREKANEIILKMLEAIND 445 Query: 466 RCFMLCTSHAMMRDLAEQFRATMT--------LPVLLQGETSKG--QLLQQFVSAGNALL 515 +L S + + + + + V +G + + +L ++F G +L Sbjct: 446 NTLILFKSFEDLENFYNYLKLRIDKLNLRNKKIHVYERGMSGEEAKELQERFKKEG-GIL 504 Query: 516 VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDP--FDEVQLPDA 573 +AT F EGVD G+TL VIID LPF P PLLK E R G F Sbjct: 505 LATGRFSEGVDFPGETLVGVIIDSLPFPVPT-PLLKKEREILMKRVGSWEAFLLTSFDRM 563 Query: 574 VITLKQGVGRLIRDADDRGVLVICDNRL 601 TL Q +GRLIR D GV+VI D R Sbjct: 564 AKTLVQMIGRLIRTEKDYGVVVIQDKRF 591 >UniRef50_A4VTT3 Rad3-related DNA helicase n=8 Tax=Streptococcus RepID=A4VTT3_STRSY Length = 837 Score = 310 bits (794), Expect = 1e-82, Method: Composition-based stats. Identities = 130/619 (21%), Positives = 244/619 (39%), Gaps = 63/619 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAI-EKGQPLVVEAGTGTGKTYAYLAPA 59 +++DF+ + A+ G R+ Q A V + + ++ + ++A G GKTY YL P Sbjct: 250 LSEDFSTN----IALLGLHERKKQTAFAQVVEKRLVDEEKVHFIQAQAGLGKTYGYLLPL 305 Query: 60 L-RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALA 118 L ++ + ++++ +K LQ+Q+ ++ + + + + LK +++ L+ + L Sbjct: 306 LAKSDQPLLVTVPTKLLQEQIMEKEGSKLKEIFRIP--IVSLKSPKHFIKLDNYWK-TLQ 362 Query: 119 GGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 D + + + W +T GD+ + + +D L + + Sbjct: 363 RQDDNRLVNQFKMQVLVWLCETTTGDLDELKQKQRYQAYFDEIA--HDGKLEPESLFWGL 420 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYF 238 F + ++A+ + +++ NH FL+ + ++ + +++ DEA + A Sbjct: 421 DFWQRLNQQALSSRLLITNHAYFLSHLKDQDPHM-----DKRMVVIDEAQKFLLAAENLA 475 Query: 239 GQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLREL 298 S +L + + L D + + C L FR + L + Sbjct: 476 TASQDLTSMLQVLQSKKDRATAIL-DQRLYESCQFELNHFLSRFRQHGQREVQKAELHQ- 533 Query: 299 LANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYS 358 L LE DV L+ + Y T L+E N Sbjct: 534 ------------LGQNLEELGDV---------DLNDLHQLIDYYDTF--WLEEKNLEEKR 570 Query: 359 YWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIF-TSATLSVNDDLHHFTSRLGIEQA 417 Y +S+ L T + P + IF SATL+++ + LG EQ Sbjct: 571 LAYLRSSKDSLLNAT-----NYL-------PDTKIFCISATLTISKKVS-LADLLGFEQV 617 Query: 418 ESLLLPSPFDYSRQALLCVLRNLPQT---NQPGSARQLAAMLRPIIEANNGRCFMLCTSH 474 L+P+ L +LP + A LA L I E +L TS Sbjct: 618 TLDLIPT--QTVTNQRLLFPTHLPDILAWTKEEHAAYLATTLGEIAEL-GRPILVLFTSI 674 Query: 475 AMMRDLAEQFRATMTLPVLLQGETSKGQLLQQ-FVSAGNALLVATSSFWEGVDVRGDTLS 533 +M+ +++ +P L Q + + L++ F +L+ T FWEGVD Sbjct: 675 SMLLQVSDLL-EDNNIPHLAQHKHGQEMTLKRKFERGECQILLGTGVFWEGVDFASQNQL 733 Query: 534 LVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGV 593 + +I +LPF +P D ++ R G +PF + LP +I LKQ +GR R + Sbjct: 734 IQVITRLPFDNPKDRFVQKINHHLREEGKNPFYDYSLPMMMIKLKQAIGRTNRHDKQDSL 793 Query: 594 LVICDNRLVMRPYGATFLA 612 +++ D R+ + YG L+ Sbjct: 794 VLVLDPRVHTKRYGQQILS 812 >UniRef50_B8FYP7 DEAD_2 domain protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FYP7_DESHD Length = 774 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 127/631 (20%), Positives = 230/631 (36%), Gaps = 64/631 (10%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P R+ QR++ VAV + I++ L V+A TG GKT + PAL+ Sbjct: 186 FPYPAYRKGQRELVVAVYKTIKEKHKLYVQAPTGIGKTLGTIFPALKC------------ 233 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 L + L + +K + T + +G L L+QQ L+ + + V Sbjct: 234 LLEGLETPIFYLTAKTITRT----VAEGS-----LLMLQQQGLSLKRVTLTAKDKVCFCP 284 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC-LGSDCP-MYKDCFVVKARKKAMDAD 192 D + + + N +C + C + + AD Sbjct: 285 ECECTPEDCSYAKGYYDRLGPALEDIFERDHWNREQIENCARNHGVCPFEFSLELTNWAD 344 Query: 193 VVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAK 252 +V+ +++ V + F E + DEAH L + A + F L+ + L L Sbjct: 345 LVICDYNYVFDPRVFLKRFFLEGGD--YAFLIDEAHNLVERAREMFSAQLNKEEFLHLKN 402 Query: 253 DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLD 312 + K Q + K +L + + E A + + + Sbjct: 403 LVEDQEPVLGKRLQTVNKNFLKLKKQGLEV--------------EKDAPTALYSSLERVV 448 Query: 313 DTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLAL 372 + E + + + L + F T E Y +Y+ + + L Sbjct: 449 NEAEKFFKKEETPPWKEKLTELYFNIQAFLHT-----AESYDEHYLTYYQYPEQDVRVKL 503 Query: 373 TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQ 431 + + + +++ K + +F SATLS L +F LG E ++ L LPSPF + Sbjct: 504 FCVDPSQQLAQVL-NKGRAAVFFSATLS---PLEYFIQVLGGEKESYKLQLPSPFPHENL 559 Query: 432 ALLCVLRNLPQTNQPG-SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF-RATMT 489 L+ + + NQ S + + +++ G + S+ + + E+ +A Sbjct: 560 CLMLQKQISTKYNQRSLSLDPIVEGITQLVQGKTGNYLVYFPSYEYLERVRERLLQAHPE 619 Query: 490 LPVLLQG----ETSKGQLLQQFVSAGNALLVA----TSSFWEGVDVRGDTLSLVII--DK 539 VL Q E + + L+ F LV F EG+D+ G+ LS +I Sbjct: 620 FKVLTQTMGMTEADREEFLEAFQEEPRESLVGLALLGGIFGEGIDLTGERLSGAVIIGVG 679 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LP + +++A ++ R G F+ + + + Q GR+IR DRG +++ D Sbjct: 680 LPQIGTERDIIRAHFQE---RYGQGFEFAYMYPGMNKVLQACGRVIRTEQDRGAILLIDE 736 Query: 600 RLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 R Y F +D +R L Sbjct: 737 RFARLSYRRLFPKEWHAIHTLQDNSRIPSLL 767 >UniRef50_C0X4L0 DNA-directed DNA polymerase III epsilon subunit n=37 Tax=Bacilli RepID=C0X4L0_ENTFA Length = 820 Score = 307 bits (787), Expect = 8e-82, Method: Composition-based stats. Identities = 120/639 (18%), Positives = 239/639 (37%), Gaps = 64/639 (10%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 + P + R+ QR++AVAV + I Q L VEA TGTGKT + L PA+ K Sbjct: 213 SFPYGEYRKGQRELAVAVYKTILSKQRLFVEAPTGTGKTMSTLFPAM------------K 260 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 A+ ++ R +K + +K L ++ + + + L Sbjct: 261 AIGEEEGERIFYLTAKTITRQVAEDAVKA---------LSEKQAQTKSITLTAKDKICFL 311 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND---NCLGSDCPMYKDCFVVKARKKAMD 190 + + + W L+ N + ++ C + ++ Sbjct: 312 TERNCTPEHCPFADGYYDRLNEGLWDLLQHENHLTREVIERYAQKHQLCPFELSLDASLW 371 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIP-EADVMIFDEAHQLPDIASQYFGQSLSSRQLLD 249 D+++ +++ V F E E ++ + DE H L + + + + ++S +L Sbjct: 372 CDLIIGDYNYLFDPTVYLRRFFEEPQSAEENIFLVDETHNLVNRSREMYSAAISRNAVLQ 431 Query: 250 LAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFL 309 + K + K++ QL++ ++ + D E + + +++ Sbjct: 432 IQKRLQ-------KESVQLKRACQKVLTTFDDIEAICEEKDTDFFAQRAPIDSLVKQ-IH 483 Query: 310 LLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFT 369 L + + + +++L F+ R+ E G+ + Sbjct: 484 RLTEVIAEWLPENQHIEELASILSFYFD-----CLSYLRISEYYDNGFYTSISLRNYDCV 538 Query: 370 LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL-GIEQAESLLLPSPFDY 428 + + A + + K + I SA+L+ L+++ L G E++ +P PF Sbjct: 539 VKQFCVDPAYLLSQRL-DKGKASILFSASLT---PLNYYQEVLGGGEESLRYRIPYPFPE 594 Query: 429 SRQALLCVLRNL--PQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA 486 Q LL + +L N+ S Q++ +L + E G + S+A M D+ + F Sbjct: 595 ENQ-LLMIGSHLQTTYKNREKSYPQISELLGKLSETKTGNYLIFFPSYAYMDDVYQVFSQ 653 Query: 487 TMT-LPVLLQG----ETSKGQLLQQFVSAGN----ALLVATSSFWEGVDVRGDTLSLVII 537 + +QG E + L +F V F EG+D++G L II Sbjct: 654 RYPQVKTQIQGTDLNEKEREAFLAEFKENPQETFIGFCVLGGIFSEGIDLKGTRLIGTII 713 Query: 538 --DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 LP +P+ L++ ++ R +G F + + Q GR+IRDA D+G ++ Sbjct: 714 VSVGLPQMNPEQELIRTFYQEERGQG---FQFAYQIPGMNKVLQAAGRVIRDARDKGFVL 770 Query: 596 ICDNRLVMRPYGATFLASLPPAPRTRD----IARAVRFL 630 + D R + F + + I + +F Sbjct: 771 LLDERFELPSVQRFFPPHWLAYRKAKTNEQLIQQVKQFW 809 >UniRef50_B6IWJ8 DNA helicase, putative n=1 Tax=Rhodospirillum centenum SW RepID=B6IWJ8_RHOCS Length = 946 Score = 307 bits (786), Expect = 1e-81, Method: Composition-based stats. Identities = 170/709 (23%), Positives = 272/709 (38%), Gaps = 126/709 (17%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQP------LVVEAGTGTGKTYAYLAPAL--- 60 +L A +PR Q A AVT A ++ EAGTG GKT YLAPA Sbjct: 218 ELVAAGSNAEPRPQQSDYASAVTHAFTPRDLPGAPNLVLAEAGTGVGKTLGYLAPATLWA 277 Query: 61 -RAKKKVIISTGSKALQDQLYSRDLPTVS-KALKYTGNVALLKGRSNYLCLERLEQQALA 118 + K V IST ++ LQ Q+ ++L + K V + KGR NYLCL LE+ +LA Sbjct: 278 EKNKGPVWISTYTRQLQHQI-DKELDRLHPDPEKKARKVVIRKGRENYLCLLNLEEASLA 336 Query: 119 GGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL----------VTSTNDNC 168 +P Q+ + L+ W+ T DGD+ D W + + C Sbjct: 337 AQTMP-QVAVAMGLMARWAAVTRDGDM-----QGGDFPGWLVDLLGRGRTLGLADRRGEC 390 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAH 228 + S CP Y+ CF+ K+ ++A AD+VV NH L + + G G+ +FDE H Sbjct: 391 VFSACPHYQKCFIEKSVRRARRADIVVANHALVMVQAAL---GGGDDAYVPSRFVFDEGH 447 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKD--------------ITIAYRTELKDTQQLQKCADR 274 + D A F L++ + +L + + + ++ + D Sbjct: 448 HVFDAADNAFAAHLTAVETAELRRWLLGAEVSGRSRARGLRRRVEDLIGGDEEAVQLLDH 507 Query: 275 LAQSAQDF-------------------------------RLQLGEPGYRGNLRELLANPQ 303 +A +A+ R + Y Sbjct: 508 IAHAARQLPGEAWGQRVHGGEPQGPVERFLALVRQQVYARAAGADGPYSLETEARPPVEG 567 Query: 304 IQRAFLLLDDTLE-LCYDVAKLSLGRSALLDAAFERATL--------------------- 341 + A LD L+ L + LS + +LD + Sbjct: 568 LLDAAAELDSALQKLVRPLEALSARLAEMLDEGADELEAETRRRLDAVSRSLKRRAAMEV 627 Query: 342 --YRTRLKRLKEINQPGYSYW-----YECTSRHFTLALTPLSVADKFKELMAQKPGSWIF 394 +R L+ L P + W + + + F + + + Sbjct: 628 AGWRQMLQELGGETPPAFVDWFGIERIDGRDVDVGMYRHWVDPTVPFAASVGAQAHGMVV 687 Query: 395 TSATLS-----VNDDLHHFTSRLGI----EQAESLLLPSPFDYSRQALLCVLRNLPQTNQ 445 TSATL+ V D R G + A +PSPFDY+RQ + V+ ++ + Sbjct: 688 TSATLTDGTGDVEQDWQAAQQRTGAVHLGKPALRATVPSPFDYARQTRVLVVTDV----R 743 Query: 446 PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQGETSKG- 501 Q+AA R + A G L T+ + ++ + E+ +P+L Q Sbjct: 744 KDDLSQVAAAYRELFLAAGGGGLGLFTAISRLKAVHEKIALPLEQAGIPLLAQHLDGMDV 803 Query: 502 -QLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLR 560 L+ F +A L+ T + +GVDV G +L L++ D++P+ PD L +AR E + Sbjct: 804 PTLVDIFRGEHDACLLGTDAVRDGVDVPGRSLRLIVFDRVPWPRPDI-LHRARREYFDRK 862 Query: 561 GGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGAT 609 + + + L+Q GRL+R ADD GV V+ D + R GA Sbjct: 863 ARARRHDDMI--TRLRLRQAFGRLVRRADDTGVFVLLDPMMPSRLRGAF 909 >UniRef50_C7RHR2 DEAD_2 domain protein n=4 Tax=Anaerococcus RepID=C7RHR2_ANAPD Length = 777 Score = 306 bits (784), Expect = 2e-81, Method: Composition-based stats. Identities = 122/614 (19%), Positives = 224/614 (36%), Gaps = 52/614 (8%) Query: 12 AKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTG 71 A P + R+ QR+MAVAV AI K + L V+A TG GKT + + P++ Sbjct: 180 ALNFPYGEYRKGQRKMAVAVYTAILKEKNLFVDAPTGIGKTISSIFPSI----------- 228 Query: 72 SKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVI 131 K++ + L + +K + LK LE+ L + + + Sbjct: 229 -KSIGEDLSDKIFYLTAKTTTGKEAIKSLK---------LLEENGLKIKAVQITSKERIC 278 Query: 132 LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTST---NDNCLGSDCPMYKDCFVVKARKKA 188 L D + + ++T + + + S Y+ C + A Sbjct: 279 LNDEVRCNPDDCPFAKGHFDRVNDALKDILTKETIMDYDIITSYAERYRVCPLEFEFDIA 338 Query: 189 MDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL 248 +D ++ +++ D V F E I + + DEAH L D A + S Sbjct: 339 SYSDFIICDYNYVF-DPTVFLRRFFEEISSRYIFLIDEAHNLLDRARDMYSFSFKDSDFK 397 Query: 249 DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF 308 +L D + +K L ++ +F + G + + + + Sbjct: 398 ELR---------ACFDINKHKKIIKVLDEAILNFENNYEKYGKKLHYYTKNHIDSLDKIL 448 Query: 309 LLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF 368 L L +E K +L+ F + + + ++ + Sbjct: 449 LELAKKMEKFLIEEKDDRNYDYVLEMYFNINSYLKISDYFMDGFYN---VISFDEENEDK 505 Query: 369 TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDY 428 + + + K+ S IF SATLS + F + LG + L L PF Sbjct: 506 IFEIKCVDPSHILKKK-YDYARSTIFFSATLS---PMPFFMNMLGARDSLKLRLDMPFSS 561 Query: 429 SRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 +L + ++ + ++ ++ I + G F+ S + + +A + Sbjct: 562 ENLIILQKSISTRYRDRSRNVSLISDLINEFINSKEGNYFIFFPSFSYLEAVAGDYTVRY 621 Query: 489 TLPVLLQGET----SKGQLLQQFVSAGN--ALLVATSSFWEGVDVRGDTL--SLVIIDKL 540 + +L+Q + + + +++F N A +V F EGVD+ GD L S++I + Sbjct: 622 SDDILIQDRSMSQLDRSKFIKKFTEESNEVAFVVLGGIFSEGVDLIGDRLIGSMIISVGM 681 Query: 541 PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR 600 P S D L+K + G FD + + Q GR+IR DDRG++ + D+R Sbjct: 682 PGVSFDRNLIKEHFD---REGLSGFDYSYTFPGINKVFQAAGRVIRSEDDRGIIYLVDDR 738 Query: 601 LVMRPYGATFLASL 614 Y F Sbjct: 739 YSWNQYQMLFPKHW 752 >UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit n=4 Tax=Lactococcus lactis RepID=D2BLE9_LACLK Length = 794 Score = 306 bits (783), Expect = 2e-81, Method: Composition-based stats. Identities = 134/626 (21%), Positives = 235/626 (37%), Gaps = 90/626 (14%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQ 76 R Q ++A + + Q +EA TG GKTY YL P L + K +++ST +K LQ Sbjct: 246 DLSSRSKQEKLAHLMETELTHLQASFIEAPTGLGKTYGYLLPILASGKGLVVSTATKVLQ 305 Query: 77 DQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD-LPVQILSDVILLRS 135 QL + P + K +A + G NY+ L + + L D +I IL+ Sbjct: 306 KQLVNDVAPKLGKTFGL--KMAKIVGTKNYISLRKFSELLLNNTDGKNFEIFKMKILI-- 361 Query: 136 WSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVV 195 W +T G++ V + + ++ +D + + Y+ F +KA+K+A A++ V Sbjct: 362 WLTETRTGELDEVSKVMTNDDYFEVI--RHDGYVNTKQLHYEQDFWLKAQKEAEQAEIKV 419 Query: 196 VNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLS-SRQLLDLAKDI 254 VNH + + + + E E V++ DEA QL I +SL + +L+ + + Sbjct: 420 VNHAYL----IERLADYPETFLENRVLVVDEAQQLFPIMENAGQKSLKITDELIKIDAET 475 Query: 255 TIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDT 314 + + + + L ++ ++ E G R Sbjct: 476 SENPQLTKRLQESLVFQLNKKELDLNKIKIDADELGLR---------------------N 514 Query: 315 LELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTP 374 L + + R + G Y + +F Sbjct: 515 LSALLEADNQIVWR-------------------------ENGMLYASDQDFYNF------ 543 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALL 434 E + K ATLS++ D F LG + + + L Sbjct: 544 --------ERLIPKNTKLFMLGATLSLSKDKPSFPDLLGFTDYRFFKIEG--NQATNQQL 593 Query: 435 CVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP 491 + + P A A + + + N +L TS + +AE+ A Sbjct: 594 LTVTDAPNIKNLSLIDYADYTANSIGELSKLNL-PMVVLFTSKMALTFVAEKLSAE-GFD 651 Query: 492 VLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL 550 +L Q S Q+ ++F +L+ SFWEGVD +++I +LPF +PDD L Sbjct: 652 ILAQDINGSPAQIKKKFDKGEGKILLGLGSFWEGVDFDKQNQVILVIPRLPFATPDDILT 711 Query: 551 KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATF 610 K + +PF + +P A + L+Q +GR+ R + +V+ D RL + Y Sbjct: 712 KKYAQKFE----NPFYDFNVPMATLKLRQAIGRVNRRKNQYSSIVVLDKRLAGKSYAKRM 767 Query: 611 LASLPPAPRTR------DIARAVRFL 630 +L + I+ FL Sbjct: 768 RKNLSETLPVKMLNLLDTISEIKNFL 793 >UniRef50_A7GAR7 Putative ATP-dependent helicase n=11 Tax=Clostridiales RepID=A7GAR7_CLOBL Length = 784 Score = 305 bits (782), Expect = 3e-81, Method: Composition-based stats. Identities = 113/623 (18%), Positives = 224/623 (35%), Gaps = 54/623 (8%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P + RE QR++AV+V + I + + + +EA TG GKT + + P++ KA Sbjct: 194 FPFKEYREGQRKLAVSVYKTISENKNIFIEAPTGIGKTISTIFPSI------------KA 241 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 + + + +K ++ K N + + + L + Sbjct: 242 IGEGKIDKIFYLTAKNTTRDFVLSNFKNMVN----RGMAFKVITLISKEKICLKEEFKCS 297 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVV 194 S + G D ++ + +K C + ++ D + Sbjct: 298 SEKCEFAKGHFDRINEAILD--ILNNENIIDETVIKKYALKHKVCPFEFSLDISLWCDGI 355 Query: 195 VVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI 254 + +++ V F + + V++ DEAH L D + + F S+S +L L K I Sbjct: 356 ICDYNYVFDPRVHLRRFFSDGKDDF-VLLIDEAHNLLDRSREMFSSSISKNNVLSLRKSI 414 Query: 255 TIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDT 314 + L + ++ + D + Y E ++Q Sbjct: 415 KDKSKA-------LYRILGKINKELLDIKKIYEVDNY---YMEKEKPEKLQILLNNFTAE 464 Query: 315 LELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTP 374 +E+ + LL+ FE + + E+ Y + E + FT+ L Sbjct: 465 IEVLMMKGNFQID-DELLNFYFEALYFLK-----ICELYGDNYITYGEEYNSDFTIKLFA 518 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES-LLLPSPFDYSRQAL 433 + + E++ +K + IF S T S + +F LG + + L L SPF + Sbjct: 519 IDTSGLLNEIL-KKSKANIFFSGTFS---PIKYFREVLGGDDEDYVLKLNSPFPIENHRI 574 Query: 434 LCVLR-NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP- 491 L + N+ S + + + G + S+ M+++ ++ Sbjct: 575 LIGYNVSTKYKNRCKSYENICDYINMACKIKKGNYMVFFPSYKYMKEVFLLYKEKYPEEN 634 Query: 492 VLLQ----GETSKGQLLQQFVSAGNAL---LVATSSFWEGVDVRGDTLSLVIIDK--LPF 542 V++Q + + + + +F + V F EG+D+ GD + II LP Sbjct: 635 VIVQNSSMSDEEREEFIDKFEKEAENVIGFCVLGGIFSEGIDLTGDKIIGAIIIGVGLPQ 694 Query: 543 TSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 + L+K +D + G F + + + Q GR+IR D+G++++ D R Sbjct: 695 ICVERNLIKNYYDDKKQSG---FQYSYIYPGMTKVMQAAGRVIRTELDKGIILLIDERFN 751 Query: 603 MRPYGATFLASLPPAPRTRDIAR 625 Y F P ++ Sbjct: 752 SYSYKEIFPKHWYPNINVKNEKE 774 >UniRef50_Q2NCB3 DNA helicase n=10 Tax=Sphingomonadales RepID=Q2NCB3_ERYLH Length = 916 Score = 305 bits (781), Expect = 4e-81, Method: Composition-based stats. Identities = 154/712 (21%), Positives = 259/712 (36%), Gaps = 126/712 (17%) Query: 16 PGFKPREPQRQMAVAVTQAI------EKGQPLVVEAGTGTGKTYAYLAPAL----RAKKK 65 G + R+ QR A V ++ L+ +AGTG GKT YLAPA +A+ Sbjct: 193 EGAEKRDGQRAYAKDVGGVFAPREKRKQPHVLLAQAGTGIGKTLGYLAPASLWADKAQGT 252 Query: 66 VIISTGSKALQDQLYSRDLPT-VSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 V +ST +K LQ QL S+ + V + KGR NYLCL LE G Sbjct: 253 VWVSTYTKNLQRQLRGESRRAWPSRRADGSRPVVVRKGRENYLCLLNLEDALQGGFAGRP 312 Query: 125 QILSDVILLRSWSNQTVDGD-----ISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 +L+ L+ W+ + DGD + + + +T C+ + CP Y+ C Sbjct: 313 AVLAQ--LVARWAAYSADGDMIGGDLPGWLGTLFRKRGITALTDQRGECIYAGCPHYRKC 370 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 F+ +A + + AD+V+ NH L + + ++FDE H + D A F Sbjct: 371 FIERATRASAQADLVIANHALVMINAARGRHHGQ----PPTRILFDEGHHVFDAADSTFA 426 Query: 240 QSLSSRQLLDLAKDITIAYRTE----------------------------LKDTQQLQK- 270 +L+ ++ ++L + I + ++ Q L Sbjct: 427 AALTGQEAIELRRWIIGPEKGNRGRRRGLAARLADVASYDDAGGEAVEAAVEAAQNLPSD 486 Query: 271 -------------CADRLAQSAQDFRLQLGEPGYR--------------GNLRELLANPQ 303 + L + E G + G L E + Q Sbjct: 487 GWIARLVEGTPFGPVEALLGQVRALTYARDESGAQDAGYGIETEVASLPGPLIEAAQDAQ 546 Query: 304 IQRA-----FLLLDDTLELCYDVAKLSLGRS--ALLDAAFERATLYRTRLKRLKEI---- 352 + A + L LE + A L A ++ A L + + Sbjct: 547 VALAAIRSPLMTLGGRLEAVLEDAPDWLDGQGRARIEGARHSLRWRIDLLAAWESLLARL 606 Query: 353 ---NQPGYSYWYECTSRHFT-----LALTPLSVADKFKELMAQKPGSWIFTSATLS---- 400 P + W+ + L F ++ + + TSATL+ Sbjct: 607 GGPADPDFVDWFAVDRNEAREFDIGIHRHWLDPMKPFAHVVLEPAHGVMLTSATLTDRGE 666 Query: 401 VNDDLHHFTSRLGIE----QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAML 456 +D + G Q ++ SPFDY+ +A + ++ ++ + G LA Sbjct: 667 TGEDWQGAIAASGAPHIELQPKTSSAQSPFDYASRAEVLIVTDI----KRGDLAALAGGY 722 Query: 457 RPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQGETS--KGQLLQQFVSAG 511 I+EA G L T+ +R + + + LP+ Q G L F Sbjct: 723 ARIVEAAGGGVLGLFTAIKRLRAVYGRIADRLARAGLPLYAQHVDPIDTGTLTDIFRDDR 782 Query: 512 NALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLP 571 A L+ T + +GVDV G++L V+++ +P+ P L +AR GG +D+ + Sbjct: 783 KASLLGTDALRDGVDVPGESLRCVVLEAVPWPRPTI-LHRARR---AANGGGAYDDRLI- 837 Query: 572 DAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDI 623 L Q GRLIR +D G ++ + R L++ PP + Sbjct: 838 --RARLAQAFGRLIRSREDAGHFIVLSSAFPSR-----LLSAFPPGTPVTRL 882 >UniRef50_A6M309 DEAD_2 domain protein n=4 Tax=Clostridium RepID=A6M309_CLOB8 Length = 761 Score = 303 bits (775), Expect = 2e-80, Method: Composition-based stats. Identities = 115/620 (18%), Positives = 224/620 (36%), Gaps = 61/620 (9%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 P K RE QR++ Q I++ + L V+A TG GKT + + PA++A IS Sbjct: 188 NFPFEKYREGQRKLINVSYQTIKEEEILFVQAPTGIGKTISTIFPAVKA-----IS---- 238 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 + + + + +K + ERL Q+ L + + + Sbjct: 239 ---EGIGEKIIYLTAKTINREVAEET---------FERLRQEGLKFRTITITAKEKTCIN 286 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND---NCLGSDCPMYKDCFVVKARKKAMD 190 + + ++ L Y+ C + + Sbjct: 287 DDFDCNPEKCIYAKDYYGKVKKVITNVIEREERISTEILKEYAEKYQVCPFELSLDISTY 346 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 D ++ +++ V + ++++ DEAH L D + + SL Q+L+ Sbjct: 347 CDGIIGDYNYIFDPRVSLSRVLES---KGNIVLVDEAHNLIDRSRNMYSASLYKSQILNC 403 Query: 251 AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLL 310 K +L ++ + R + + E + L Sbjct: 404 KK-------ITKGKLNKLHSLLGKINDYFINLRNECDHREVKSFYEEEHPKELSKYLQLY 456 Query: 311 LDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTL 370 L ++ E+ G +L F+ T ++ Y E S+ L Sbjct: 457 LKESEEVLV-RGNRFDGYEDILKLYFDMNAFTST-----TQLYDENYRTCIEKDSQEIKL 510 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES-LLLPSPFDYS 429 L ++ A +E + K S IF SAT+S + ++ + LG + L LPSPF+ Sbjct: 511 TLYCVNPAKNLREYL-GKCYSVIFFSATIS---PIKYYVNMLGGDDNTYRLKLPSPFNKE 566 Query: 430 RQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT-- 487 + N+ + + + + + I+ G + S+A M +L + Sbjct: 567 NLKVHISPINIRYSYRKRTLSSVKDKICGFIKQQIGNYMIFSPSYAYMEELYSHMEESKL 626 Query: 488 MTLPVLLQ----GETSKGQLLQQFVSAGNALLVA--TSSFWEGVDVRGDTL--SLVIIDK 539 ++ Q E K + L++F ++ N L+ F EG+D+ GD L S++I Sbjct: 627 EEFNLMKQKPNMTEEEKSEFLRRFKNSNNLLMFCVLGGMFSEGIDLPGDQLIGSIIIGVG 686 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 P + ++K ++ D +D + + ++Q VGR+IR D+G +++ D+ Sbjct: 687 YPMVDMTNEVIKDFYKE------DGYDYAYVFPGINKIQQAVGRVIRTETDKGRVLLIDD 740 Query: 600 RLVMRPYGATFLASLPPAPR 619 R + Y P + Sbjct: 741 RYINNKYSVLLPNEWYPINK 760 >UniRef50_A8URH3 ATP-dependent helicase (DinG family) protein n=2 Tax=Aquificaceae RepID=A8URH3_9AQUI Length = 644 Score = 302 bits (774), Expect = 3e-80, Method: Composition-based stats. Identities = 165/655 (25%), Positives = 270/655 (41%), Gaps = 99/655 (15%) Query: 16 PGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKAL 75 G+ RE Q + V +++G +VEA TGTGKT+AYL P + + +K IISTG+K L Sbjct: 13 KGYDRRESQEKFIALVRDLLDEGGVKLVEAPTGTGKTFAYLIPLITSGQKAIISTGTKIL 72 Query: 76 QDQLYSRDLPTVSKALKY----TGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVI 131 QDQL RD+ ++ K + A++KG+ NYLC++RL ++ P + L DV Sbjct: 73 QDQL-KRDIEFLTGHYKLLTGEDVSYAVIKGKGNYLCIDRLHKER-----PPAEELGDVP 126 Query: 132 LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD---CPMYKDCFV-VKARKK 187 L +GD + +A + +D C S CP +C+ K + + Sbjct: 127 DL---METQWEGD---LTLSSCTPEAVSKINVDDDYCTPSYRSVCPYRSECYYWEKVKLR 180 Query: 188 AMDADVVVVNHHLF-LADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQ 246 + ++VVNH L L D E V++ DEAH+L + +LS Sbjct: 181 EARSQILVVNHALLALKDFENTEE---------RVLVIDEAHELDRYLTLASTSALSVYW 231 Query: 247 LLDLA---------------KDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGY 291 +L +D L ++ + + L+ D + +L EP Sbjct: 232 FRELIGVLEKLSGQEVKLSPEDFFRDRLESLFTEEKHEVVLESLSPYVLDLKDKLSEPIK 291 Query: 292 R--GNLRELLANPQ-----------------IQRAFLLLDDTLELCY-------DVAKLS 325 + +++E L ++ L + L+ + Sbjct: 292 KVYSDIKERLIAEAEEFLEGRLMVSFKLKGFLESTLLFPPEFLDRFKAGYEDPDEEENRL 351 Query: 326 LGRSALLDAAFERATLYRTRLKRLKEINQPGYSY-----WY-ECTSRHFTLALTPLSVAD 379 + + LD ER ++ RL E ++ + Y W + + ++ + + P+ Sbjct: 352 IEKIKKLD-YIERKLQKLSQFIRLCEEDKEEFGYKVSKSWSKKLQTYNYKMEIFPVFPRG 410 Query: 380 KFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRN 439 + TSAT+ D FT+ +G E L FDYS+ + N Sbjct: 411 IIDPH---SYKGVLLTSATIDPED--IEFTTGIG---GEFYRLGHNFDYSKVTFIITNTN 462 Query: 440 LPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETS 499 + G +L I + + +L T+ ++ F + QGE S Sbjct: 463 ---PKREGWEEKLKESYEDIRNLHE-KVLVLLTNRRHLK----LFDGEGDIA--KQGEDS 512 Query: 500 KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRL 559 L+++ +L+ S W G+DVRG+ +++ KLPF SP+DP+ R+ R Sbjct: 513 LNSLIERIREGKIKVLIGLDSLWTGIDVRGE--KGILMSKLPFESPEDPVTYHRIRYLRS 570 Query: 560 RGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASL 614 G DPF E Q A I +QGVGRL+R D G +V+CDNR+ FL L Sbjct: 571 VGEDPF-EYQRRKAFIKFRQGVGRLVRQKTDSGTIVLCDNRIWRYKEFINFLREL 624 >UniRef50_A0YBF9 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YBF9_9GAMM Length = 804 Score = 300 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 122/641 (19%), Positives = 233/641 (36%), Gaps = 69/641 (10%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA-----KKKVII 68 A P + R+ QR +V+ +A+ L V+A TG GKT L PA++A +KV Sbjct: 193 AFPYGEFRDGQRSFSVSSYRAMASAGQLFVQAPTGIGKTIGSLFPAIKAIAEGHHEKVFF 252 Query: 69 STGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILS 128 T K + + L + + L + +C + V Sbjct: 253 LTA-KTSGRAVAEKSLADMQEK-GLLLKTVTLTAKEK-ICFNPGSPCDPEHCEYAVGYYD 309 Query: 129 DV-ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 + ++ S T +A ++ C + Sbjct: 310 KLNSVIESSLEATNYFKRDDIEHIARENTM---------------------CPFELSLDL 348 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 DVV+ +++ +V F + + E ++ DEAH L D F + +L Sbjct: 349 LEWVDVVICDYNYVFDPVVYLRRLFDDPLVEHCFLV-DEAHNLVDRGRDMFSAQIEKDRL 407 Query: 248 LDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQ-R 306 L + + + + E+ + + D + ++ R + + + P + Sbjct: 408 LSVKRQVKRSSSVEVGG---VLRKIDGINRAFLSIRKEHSHSLEQHGFSVVDEPPTVLIS 464 Query: 307 AFLLLDDTLEL-CYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTS 365 + L+ + + LLD F+ R R + Y + Sbjct: 465 KLRSFCEHLQHWLAEHERDGRDYDLLLDLYFD-----ALRFTRTADYFDDHYVCLIKTDK 519 Query: 366 RHF-TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-AESLLLP 423 + ++ L + + + + ++ S +F SATL+ ++++ LG+ ++ + LP Sbjct: 520 KKLLSINLYCVDPSRLLGKGL-ERSKSSLFFSATLA---PINYYQQLLGVSPTSQFVDLP 575 Query: 424 SPFDYSRQALLCVLRNLPQ-TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 SPF + Q + V + GS ++A +++ +IE++ G + S+ M + + Sbjct: 576 SPFPHENQGVFVVKDIATNFKQREGSYNKIAVLIQTMIESHRGNYIVYFPSYQYMEKVYD 635 Query: 483 QFRATMT-LPVLLQ----GETSKGQLLQQFVSAGNALLVA----TSSFWEGVDVRGDTLS 533 F + +++Q E S+ L +F +A LV F EG+D++G L Sbjct: 636 VFGQQNSATDIIIQQRQMNEESRQCFLNRFDAAYEHDLVGFAVMGGIFGEGIDLKGLRLI 695 Query: 534 LVII--DKLPFTSPDDPLLKARMEDCR-------LRGGDPFDEVQLPDAVITLKQGVGRL 584 VII LP + L+K D R R + F+ + + Q GR+ Sbjct: 696 GVIIIGVGLPQMGIERDLIKQHFRDTRVDDVVDQHRTNEGFNYAYQYPGMNRVLQTAGRV 755 Query: 585 IRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIAR 625 IR DRG++ + D R Y F P I + Sbjct: 756 IRSEQDRGIVCLVDERFASARYRQLFP---PHWTNLEVIDQ 793 >UniRef50_A1AQ39 DEAD_2 domain protein n=7 Tax=Desulfuromonadales RepID=A1AQ39_PELPD Length = 807 Score = 300 bits (767), Expect = 2e-79, Method: Composition-based stats. Identities = 130/650 (20%), Positives = 234/650 (36%), Gaps = 70/650 (10%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR---AKKKVIISTG 71 P PR Q + + + + +G+ ++++A TG GKT L P L+ ++ + ++ Sbjct: 189 FPFATPRSGQVDLMRTIQEGMGEGRAMLLQAATGLGKTVGVLFPVLKEAFSRGQRVVYVT 248 Query: 72 SKALQDQLYSRDLPTVSKALKYTGNVAL-LKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 K Q + + +A ++ + KG+ +C + D P+ Sbjct: 249 PKNSQHAVAEDAVDRFQQAGSKIRSLTITAKGK---ICFK----------DEPLCDPGYC 295 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMD 190 R + + + DI ++ + S LG Y+ C + + Sbjct: 296 EYARDYYEKLHENDILAILARK------RRLKSRTFRQLGEQ---YQVCPFELQLDASRE 346 Query: 191 ADVVVVNHHLFLADMVV--KESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL 248 AD+V+ +++ A + + ++ DEAH LP A +Y+ LSS+ L Sbjct: 347 ADLVICDYNYVFAPRSALGRMTDMSIDQEGKPSLVIDEAHNLPGRAMEYYSPVLSSQHLE 406 Query: 249 DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF 308 L + + K+ QQL D L G G R L P ++ Sbjct: 407 MLRHAMGDIHPPFNKEAQQL----------LDDCLATLTSCGGAGGSRPLRITPPLEPFL 456 Query: 309 L---LLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTS 365 L L D + +L F + R Q ++ W+ S Sbjct: 457 EQDERLRALLNRYLDSGAEMGRQDPILGLCFSWSEFTRLLEYAADPERQEFFTTWHPHGS 516 Query: 366 RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLP 423 + +T ++ KE A + SATL ++ G++ + P Sbjct: 517 GG-AVKITCCDASEMLKECYADYGQ-VVAFSATL---KPFDYYARLSGLDPESVRTAEFP 571 Query: 424 SPFDYSRQALLCVLR-NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 SPF + LL + + + + + + ++A +R I G + S + + E Sbjct: 572 SPFPPELRKLLLIPQVSTRYSRREANYGKIADAVRRIAGGRRGNYLVFLPSFPFLERVLE 631 Query: 483 QFRATMTLPVLLQGETSKGQLLQQFVS-----AGNALLVA--TSSFWEGVDVRGDTLSLV 535 FR VL Q K + +++ + +L A SF EGVD G+ + Sbjct: 632 LFRPPEGFVVLRQERDMKARQVEEVLERLRAGNSPTILFAVQGGSFSEGVDYAGEMVIGA 691 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 + P + D + R E + R G F A+ Q GR+IR DRG++V Sbjct: 692 FVVGPPLPNYDFQREQMR-EYYQKRYGAGFPYAYTIPAMARAVQAAGRVIRSETDRGLIV 750 Query: 596 ICDNRLVMRPYGATFLASLPPAPRTRDIARAV---------RFLAIPSSR 636 + D+R + Y +++P D+ V F A SR Sbjct: 751 LMDDRFMDPEYS----SAMPADWFESDVRELVSGSILKDVEEFWAGTESR 796 >UniRef50_C0XBA8 ATP-dependent helicase DinG n=1 Tax=Lactobacillus gasseri JV-V03 RepID=C0XBA8_9LACO Length = 773 Score = 299 bits (766), Expect = 2e-79, Method: Composition-based stats. Identities = 137/624 (21%), Positives = 245/624 (39%), Gaps = 62/624 (9%) Query: 19 KPREPQRQMAVAVTQAIEKGQP----LVVEAGTGTGKTYAYLAPALRA----KKKVIIST 70 KPR Q QM++ + + + + VEA GTGKT L P + K++ T Sbjct: 22 KPRVSQVQMSLDIADFLYNKKIRSKIMFVEAPVGTGKTLGALIPTILYSSNFHKRITYVT 81 Query: 71 GSKALQDQLYSRDLPTVSKA--LKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILS 128 G+K LQ Q++ DL + + + L G+ NY C++ L Q Sbjct: 82 GTKNLQRQVFYEDLEMLKGINLMLPSSETVLAMGKDNYACIDNLHN-----NRSKFQPAQ 136 Query: 129 DVILLRSWSNQTVDG---DISTCVSVAEDSQA----WPLVTSTNDN--CLGSDCP--MYK 177 +L+ +QT G +I + + W L+ C +CP Y+ Sbjct: 137 RFDMLKKILDQTTTGLRVEIDNKLKARDQDPLSDFEWDLIKIKGKQKACKIYNCPGHRYR 196 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 + F K + + ++ + L +++ +++ + P +++ DEA + + Sbjct: 197 ETFNKKPFLTVTNQNQMIQS----LINVIEEKNSIVSVTP--GIIVVDEAQLFDN---SF 247 Query: 238 FGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRE 297 G +S + +L K T+ ++K D L ++F L++ Y N R Sbjct: 248 LGVVKNSLNISELKKLTVK--------TKYIKKFNDNLKIIQKEF-LKIKNKDYGLNTRY 298 Query: 298 LLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGY 357 P + F L + E + L + + +N Sbjct: 299 ----PVPKTVFQSLHNIQECLQSSENIE------LFGILNKNPYAKYEDLIFNILNTKDS 348 Query: 358 SYWYECTSRHFTLALTPLSVADKFKELM--AQKPGSWIFTSATLS-VNDDLHHFTSRLGI 414 W + + P + K KE + IF S TL+ N+ + + GI Sbjct: 349 ISWMSIAKEN-EITFIPKNFYKKIKEWIQKLSVYNKIIFLSGTLTNTNNPIQEIENEWGI 407 Query: 415 EQAESLLLPSPFDYSRQALLCVLR---NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLC 471 + SPF Q L + N + + +RP+ +G +L Sbjct: 408 KDFIYKKYNSPFSPKDQVYLMLPEKGFNNLNNKSKHATEMVERTIRPLCNRIHGGILILS 467 Query: 472 TSHAMMRDLAEQFRATMTLP-VLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGD 530 S + L+ + ++ VL QG+ S L + F +++L+ + SF G + G+ Sbjct: 468 NSLELKDHLSIKMKSKFENRLVLTQGQMSNNSLTKLFKKEKDSILIGSGSFKTGFSIPGE 527 Query: 531 TLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADD 590 L V++ LPF+ PDDP +K +++ R +++ L + L+Q +GRLIR DD Sbjct: 528 ALQAVVLSSLPFSVPDDPYIKLKIQTFAKRYHKSPNDISLQLMLKELEQSMGRLIRSIDD 587 Query: 591 RGVLVICDNRLVMRPYGATFLASL 614 GV+V+ D+RL +PYG L Sbjct: 588 YGVIVVTDSRLYSKPYGKKVRNWL 611 >UniRef50_D1PL53 Putative helicase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL53_9FIRM Length = 794 Score = 298 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 138/639 (21%), Positives = 222/639 (34%), Gaps = 83/639 (12%) Query: 8 DGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVI 67 +G P + R QR + AV G L+ +A TG GKT + L PAL+A +K Sbjct: 186 EGLRRLTFPFPEYRAGQRALIKAVYGTCRDGGQLLCQAPTGIGKTMSVLFPALKALEK-- 243 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 +G + L DL ++ + Sbjct: 244 ------------------------GGPIFYLTARGTTRTAAETALAILRSHDADLSLRSV 279 Query: 128 ----SDVILLRSWSNQTVD------GDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 D I L+ T D G + ++ P +T+ L Y+ Sbjct: 280 TLTAKDKICLQETRECTPDACPYAKGYYDRIKNALWNALDTPSLTAEGLQHLAHQ---YE 336 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 C ++ +DVV+ +++ D VV + F E + + + DEAH LP A + Sbjct: 337 VCPFELGLDLSLWSDVVIGDYNYLF-DPVVHLARFFESRGDY-LFLIDEAHNLPSRAREM 394 Query: 238 FGQSLSSRQLLDLAKDITIAYRTELKD-----TQQLQKCADRLAQSAQDFRLQLGEPGYR 292 SL D AK + ++ LK+ Q R + + D R G+ + Sbjct: 395 HSASLCKSSFWD-AKKCLGSGKSSLKNALNKVNQIFISWRHRCEEESSDSRS--GKTFFV 451 Query: 293 GNLRELLANPQIQRAFLLLDDTLELCYDVAK-LSLGRSALLDAAFERATLYRTRLKRLKE 351 ELL RA L L + LE D + S ALL F+ R + + Sbjct: 452 KERAELLD-----RALLKLCEPLENWLDEHRDPSETHDALLQLYFDVRAWLR-----ISD 501 Query: 352 INQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSR 411 + A+ L + K + + SATL+ +++ Sbjct: 502 TFDDHFVLQIASHGSEVRAAMLCLDPSAFLAND-FSKGRAAVLFSATLAPA---NYYKDL 557 Query: 412 LGIEQAESLLLPSPFDYSRQALLCVLR-NLPQTNQPGSARQLAAMLRPIIEANNGRCFML 470 G+ +A ++ L SPF L C + ++ S Q++ ++ + A G Sbjct: 558 CGLPEARAVALRSPFPARNLGLWCARHVSTRYKDRSASIPQVSDLIACLAGARTGNYLAF 617 Query: 471 CTSHAMMRDLAEQFRATMT-LPVLLQ----GETSKGQLLQQFVSAGN----ALLVATSSF 521 S++ ++ + E F A L Q E + L F V F Sbjct: 618 FPSYSYLQSVLEDFSARYPNFSTLCQQSSMDEAQRTVFLSHFKPNPPQTQIGFAVLGGVF 677 Query: 522 WEGVDVRGDTLSLVIIDK--LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQ 579 EGVD+ GD L V I LP P L+ E+ G FD + + Q Sbjct: 678 GEGVDLTGDRLIGVAIVGPGLPQVGPRQEQLRQHFEE---TCGSGFDYAYRYPGMNKVLQ 734 Query: 580 GVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 GR+IR D+GV+++ D+R +PP Sbjct: 735 AAGRVIRTPQDKGVVLLIDDRFASPENRRL----MPPHW 769 >UniRef50_C6D1G2 DEAD_2 domain protein n=5 Tax=Bacillales RepID=C6D1G2_PAESJ Length = 773 Score = 298 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 129/626 (20%), Positives = 220/626 (35%), Gaps = 66/626 (10%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 A P R QR++A + Q I G+ L +A TG GKT + L PA+ K Sbjct: 185 AFPFSSYRAGQRKLAASAYQTIADGRKLFAKAPTGIGKTMSTLFPAV------------K 232 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLK--GRSNYLCLERLEQQALAGGDLPVQILSDVI 131 A+ ++ R ++ T LK G L A+ L D + Sbjct: 233 AIGEERLERLFYLTARTTTRTAAEEALKMLGDG------GLHLHAVTLTAKEKVCLKDEV 286 Query: 132 LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDA 191 + G D S + + C + A A Sbjct: 287 RCSPEYCEFAKGYYDRINGAILDMLGNE--ASMTREVIERYAYKHHVCPFEFSLDAAYAA 344 Query: 192 DVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLA 251 D V+ +++ D V E ++ DEAH L D A + + L L+L Sbjct: 345 DAVICDYNYIF-DPRVNLKRLFEEQKRKTALLVDEAHNLVDRAREMYSAELRKADFLELQ 403 Query: 252 KDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLL 311 R + + A + Q R + E G + ++ L Sbjct: 404 -------RASKTIRPLVYQSAKAVNQYFIALRKSIEESGKEATGTN-MERYLPEQLIEQL 455 Query: 312 DDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLA 371 + ++ + LLD F R+ ++ Y + E + Sbjct: 456 ETLVQAAEEQLAQGDQDPLLLDVYFG-----CQHFLRIAKLYDERYVTYAEKERNDVRMK 510 Query: 372 LTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPSPFDYS 429 L L + ++ A+ + I SATLS LH+F LG + ++ +PSPF Sbjct: 511 LFCLDPSYLLRQ-YAKGYKAQILFSATLS---PLHYFMDMLGGDAETDYAVAIPSPFSSE 566 Query: 430 RQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF----- 484 + + + ++ + ++A +LR +E + G + S+A + + E+F Sbjct: 567 QLDVRIEKLSTRYQDRERTMDRVAGLLRSTVERHQGNILVFFPSYAYLNGVYERFMELPL 626 Query: 485 --RATMTLPVLLQG----ETSKGQLLQQFVSAGNALLVA----TSSFWEGVDVRGDTLSL 534 + T ++Q E + L F N LV F EG+D+ GD L+ Sbjct: 627 SEEESATFTAMVQRPNMPEEERDAFLAAFAPDNNNTLVGFAVMGGIFSEGIDLVGDRLTG 686 Query: 535 V--IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRG 592 V + LP + ++K + +G + F+ + + + Q GRLIR DRG Sbjct: 687 VAVVGVGLPQVGLERNIIKDYFD---RQGKNGFEYAYVFPGMNKVLQAGGRLIRSESDRG 743 Query: 593 VLVICDNRLVMRPYGATFLASLPPAP 618 +L++ D+R Y LPP Sbjct: 744 MLLLIDDRYAHPQYARL----LPPEW 765 >UniRef50_A7HQ70 Helicase c2 n=7 Tax=Alphaproteobacteria RepID=A7HQ70_PARL1 Length = 970 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 168/756 (22%), Positives = 262/756 (34%), Gaps = 161/756 (21%) Query: 19 KPREPQRQMAVAVTQAIEKGQ------PLVVEAGTGTGKTYAYLAPA----LRAKKKVII 68 + R Q A A + A ++ EAGTG GKT Y+APA R K V + Sbjct: 230 ERRTGQADFAGAASLAFAPRDAAGAPNVVIAEAGTGIGKTIGYIAPASLWAARNKGTVWL 289 Query: 69 STGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILS 128 ST +K LQ QL + + KGR NYLC+ + LA Sbjct: 290 STYTKNLQRQLDQELSRLYPDPAEKAEKAVIRKGRENYLCMLNFAE--LADRAAMGGGAV 347 Query: 129 DVILLRSWSNQTVDGDISTCVSVAEDSQAW-----------PLVTSTNDNCLGSDCPMYK 177 + L+ W+ + DGD+ V D AW +T C+ + CP YK Sbjct: 348 AIGLVARWAKASRDGDM-----VGGDFPAWLAARLGGVTGRTGLTDRRGECVYTACPYYK 402 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKE-------------SGFGELIPEAD---- 220 CF+ +A +KA A++VV NH L + + + G EA Sbjct: 403 KCFIERAIRKARRAEIVVANHALVMRQAALDQAMGPVAHRPVKAAEAAGNAEDEAPSGRE 462 Query: 221 ---VMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDIT---------------------- 255 +FDE H + D A F +LS + +L + I Sbjct: 463 ALARFVFDEGHHIFDAADGAFSATLSGLETAELRRWIRGAEGQRGRRGRGIEERVGDLIA 522 Query: 256 -----------------------IAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYR 292 R + + L + R + + + Sbjct: 523 EDKLAEEALAAALSAAAALPAPGWTARIHDGAPRGAGEKFLALVRQQVHARAEDNDSPFS 582 Query: 293 GNLRELLANPQIQRAFL-------LLDDTLELCYDVAKLSLGRSAL---------LDAAF 336 + P + A L L+L D + L A +DAA Sbjct: 583 LEAETMPPVPGLMEAAAALDDALKRLAAPLQLIADRLRARLDDEAEDLDTSTRIRMDAAA 642 Query: 337 E--------RATLYRTRLKRLKEINQPGYSYWYECTSR-----HFTLALTPLSVADKFKE 383 +R+ L L + W+ + F + Sbjct: 643 RGLDRRVRILIPSWRSMLASLNAATPEAFVDWFSVERLYGREIDMGMHRHWRDPTIPFAD 702 Query: 384 LMAQKPGSWIFTSATLS--------VNDDLHHFTSRLGIEQ----AESLLLPSPFDYSRQ 431 + + + TSATL ++ R G A + SPFDY +Q Sbjct: 703 AVLEPAHGVLITSATLRDRLVEEAEDDEGWETAEIRTGASHLAVPARRAFMASPFDYEKQ 762 Query: 432 ALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF---RATM 488 + V+R++ +T+ Q+A+ R + A G L T+ +R + E+ Sbjct: 763 VRIFVVRDVSRTD----INQVASAYRELFRAAGGGALGLFTAIHRLRAVHERIVTPLEEA 818 Query: 489 TLPVLLQGET--SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPD 546 L + Q L+ F + +A L+ T + +GVDV GD+L +++ D++P+ PD Sbjct: 819 GLELYAQHVDALDTATLVDIFRAERHACLLGTDAVRDGVDVPGDSLRMIVFDRVPWPRPD 878 Query: 547 DPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPY 606 L KAR E G +D++ + LKQ GRLIR A DRGV + D RL R Sbjct: 879 I-LHKARREQF---GKARYDDML---TRLRLKQAFGRLIRRATDRGVFIALDARLPTR-- 929 Query: 607 GATFLASLPPAPRT------RDIARAVRFLAIPSSR 636 ++ P I + RFL+ + Sbjct: 930 ---LTSAFPRGVTVHRVGLAEAIDESRRFLSGGEAE 962 >UniRef50_C5SK23 Helicase c2 n=2 Tax=Caulobacteraceae RepID=C5SK23_9CAUL Length = 986 Score = 295 bits (756), Expect = 3e-78, Method: Composition-based stats. Identities = 178/763 (23%), Positives = 271/763 (35%), Gaps = 170/763 (22%) Query: 19 KPREPQRQMA------VAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKKKVII 68 + R Q+ A A A E+ L++EAGTGTGKT YL+P A +A+ +V I Sbjct: 240 EGRPEQQAFALKTREMFAPKWASEQPNMLLLEAGTGTGKTLGYLSPSRLWAEKAQGRVWI 299 Query: 69 STGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILS 128 ST +KALQ Q+Y+ + VA+ KGR NYLCL +++ P + + Sbjct: 300 STYTKALQKQIYNDTRALFDTEGERENKVAIRKGRENYLCLLNWQERLAPLTQGPGEAIV 359 Query: 129 DVILLRSWSNQTVDGDISTCVSVAEDSQAW-------------------PLVTSTNDNCL 169 L+ W + DGDI V D W + C+ Sbjct: 360 A-ALVARWIVYSRDGDI-----VGGDFPTWLPSLLPAGSAAAMFGALNPANLVDRRGECI 413 Query: 170 GSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVK-------ESGFGELIPEAD-- 220 S CP Y+ CFV K+ +KA A +++ NH L +A E G + PEA Sbjct: 414 YSACPHYRTCFVEKSIRKAKSAQIIIANHALVMAQAAYDLREAAKAEQGEATMEPEAPGL 473 Query: 221 -VMIFDEAHQLPDIASQYFGQSLS--------------------SRQLLDLAKDITIAYR 259 ++FDE H + + A F LS SR L D+ Sbjct: 474 SRLVFDEGHHVFEAADGAFSSELSGFEAYELRRWIRGNEGRGRRSRGLEQRLGDLLATRE 533 Query: 260 TELKDTQQLQKCADRL-----------------------------AQSAQDFRLQLGEPG 290 + L + A L A + + ++ E Sbjct: 534 VAQNALKDLIRAAHLLPSEGWSQRLTTRTQSGEMMAPSGPIEALLAAALKQIEVRGQESA 593 Query: 291 YRGNLRELLANPQIQRA------------------------FLLLDDTLELCYDVAKLSL 326 + R N + + L+ ++ ++ L Sbjct: 594 SKSRYRPEADNAECEAHPCLPEVSEAASAAAKALQAIEAPLLALVRAIEDILTGEEEIDL 653 Query: 327 GRSALLDAAFERAT--------LYRTRLKRLKEINQPG------YSYWYECTSR-----H 367 LD A +R+ L++L Y W+ S Sbjct: 654 AERTRLDGALRGLERRARMTLPAWRSLLQQLAYAEDEDPMQPSPYVDWFATISHGGRLVD 713 Query: 368 FTLALTPLSVADKFKELMAQKPGSWIFTSATLSV--------NDDLHHFTSRLGIEQ--- 416 L + + + + + + SATLS D R G Sbjct: 714 VGLHRHFVDPSVPLADYVLKPAHGVLMASATLSDKALAEHPDEDPFALARQRTGAAHLSM 773 Query: 417 -AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 A+SL + SPFDY QA L V+ ++P+ R +A+ ++ + A G L T+ Sbjct: 774 GAKSLRIASPFDYEAQARLFVVTDVPR----DDPRAVASAMKALFLAAGGGGLGLFTAIR 829 Query: 476 MMRDLAEQF---RATMTLPVLLQGETSK--GQLLQQFVSAGNALLVATSSFWEGVDVRGD 530 ++ + EQ + + Q L+ F S ++ L+ T + +GVDV G Sbjct: 830 RLKAVYEQLFRPLGEAGISLYAQHVDPLDVSDLISVFRSERHSCLLGTDAVRDGVDVPGQ 889 Query: 531 TLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADD 590 L L+ D++P+ P D L KAR + + L A L Q GRLIR ADD Sbjct: 890 ALRLIAFDRIPWPRP-DALHKARRAHFGAK----LYDDALVRA--KLAQAFGRLIRRADD 942 Query: 591 RGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIP 633 RGV V+ D+ R ASLP + A AI Sbjct: 943 RGVFVMLDSAAPTR-----LFASLPDGVVVQRCTLAEALTAIE 980 >UniRef50_Q2RPW4 Helicase c2 n=6 Tax=Alphaproteobacteria RepID=Q2RPW4_RHORT Length = 927 Score = 295 bits (754), Expect = 5e-78, Method: Composition-based stats. Identities = 176/722 (24%), Positives = 274/722 (37%), Gaps = 141/722 (19%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQP------LVVEAGTGTGKTYAYLAPAL----RAKKKV 66 G + R Q A A+ A + ++ EAGTG GKT Y+APA R + V Sbjct: 219 GAEARPQQADYASALCVAFQPRATPDWPTLVLAEAGTGVGKTLGYIAPASLWAERNEGTV 278 Query: 67 IISTGSKALQDQL---YSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP 123 IST ++ LQ QL R P ++ ++ V + KGR NYLCL E+ G P Sbjct: 279 WISTYTRNLQRQLDGELDRLYPDPAEKMR---KVVIRKGRENYLCLLNYEEAVGRLGATP 335 Query: 124 VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWP----------LVTSTNDNCLGSDC 173 + + + L+ W T DGD+ V D W + C+ S C Sbjct: 336 QEAV-ALGLMARWIKATRDGDM-----VGGDFPGWMVDILGRERSLALADRRGECVFSSC 389 Query: 174 PMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDI 233 Y CF+ +A ++A A +VV NH L L + G + I DE H + D Sbjct: 390 DHYDRCFIERAVRRARRARLVVANHALVLIQAAL---GGIDDDSRPTRYILDEGHHVFDA 446 Query: 234 ASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRL----------AQSAQDFR 283 A F LS + +L + + A + L++ D L + A D Sbjct: 447 ADSAFSAHLSGFEGAELRRWLLGAEEGHRSRARGLRRRVDGLYDQAGPLAADLEEALDGA 506 Query: 284 LQLGEPGY---------RGNLRELLANPQIQRAF--------------------LLLDDT 314 L PG+ RG + LA + Q LLDD Sbjct: 507 RALPGPGWAQRLAGGTGRGAIERFLATARTQVLARAPASESAHGLETDLRPPLPELLDDA 566 Query: 315 LELCYDVAKLSLGRSALLDAAFER------------------------------ATLYRT 344 + + L + A + A +R A ++R Sbjct: 567 RAVVAALTDLVVPLKAFVRALVKRLDEEADELDTPTRARIESVARSIERRALGPAQVWRD 626 Query: 345 RLKRLKEINQPGYSYWYECTSRH-----FTLALTPLSVADKFKELMAQKPGSWIFTSATL 399 + E + W E + + F +A + + TSATL Sbjct: 627 MAASIAEDPPADFVDWLELERSEGREVDIGMHRHWIDPTRPFAATLAARAHGLVVTSATL 686 Query: 400 ---SVNDDLHHFTSR-------LGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSA 449 S + + ++ LG + +PSPFDY + V+ ++ + Sbjct: 687 RDGSGDGEADWLSAEARAGAPHLGTPAIRA-SVPSPFDYPATTRVLVITDV----KRDDL 741 Query: 450 RQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT---LPVLLQGETSK--GQLL 504 Q++A R + A G L T+ +R + + + LP+L Q + L+ Sbjct: 742 DQVSAAYRELFRAAGGGGLGLFTAIGRLRAVHARIAPALDALGLPLLAQHVDAMDISTLI 801 Query: 505 QQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDP 564 + F + +A L+ T + +GVDV G +L L++ D++P+ PD L KAR + GG Sbjct: 802 EIFRAEEDACLLGTDAVRDGVDVPGRSLRLIVFDRVPWPRPDI-LHKARR---KAMGGSL 857 Query: 565 FDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA 624 +D+ A + LKQ GRL+R A DRGV V+ D+RL R G + P + Sbjct: 858 YDDRI---ARLRLKQAFGRLVRRAGDRGVFVMLDSRLPSRLGG-----AFPEGVVIERVG 909 Query: 625 RA 626 A Sbjct: 910 LA 911 >UniRef50_B9XAU8 DEAD_2 domain protein n=3 Tax=Bacteria RepID=B9XAU8_9BACT Length = 824 Score = 295 bits (754), Expect = 5e-78, Method: Composition-based stats. Identities = 130/659 (19%), Positives = 244/659 (37%), Gaps = 88/659 (13%) Query: 12 AKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK-----KKV 66 A A P R QR++AVA + + +G L +EA TG GKT + + PA++A +++ Sbjct: 191 ALAFPFSNYRTGQREIAVAAYKIMARGGRLFIEAPTGIGKTISVIFPAIKAMAERKLERI 250 Query: 67 IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQI 126 T + + + + + + V L R LC+ D Sbjct: 251 FYLTA-RTIGRAVAEKAFADL-RGKGLQLRVVTLTAREK-LCIR----------DGKACE 297 Query: 127 LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARK 186 LS L + + ++ + + V + + C + Sbjct: 298 LSTCPLAQGYYDRYKPAMREALGRQEINRRVLEEVAQRH-----------QVCPFELSLD 346 Query: 187 KAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQ 246 + D ++ +++ V F + + ++ DEAH L D A + F +++R+ Sbjct: 347 ISSWVDGIICDYNYVFDPKVYLRRHFADEAGDFAFLV-DEAHNLVDRAREMFSADINTRE 405 Query: 247 LLDLAKDITIAYRTELKDTQQLQKCADRL-------AQSAQDFRLQLG------------ 287 L+++ + I K +L +L A+S+ DF ++ Sbjct: 406 LVEVKQAIKREVPGCAKAITRLNVGIKKLIGKVGAEAESSADFPDEMDLFSAGAVTKTKN 465 Query: 288 -EPGYRGNLRELLANPQIQRAF-----LLLDDTLELCYDVAKLSLG---RSALLDAAFER 338 L + + I + F +L++D LE + R LL F Sbjct: 466 IPSATTRTLPQARGDMGIFKEFPSSLTMLVEDVLETAETWLTRNEAAEFRDDLLQLYFRL 525 Query: 339 ATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSAT 398 + +R E+ Y E + + L L + ++ + + + +F SAT Sbjct: 526 LSF-----RRTAELYDERYVTLVEA-AESVRVRLFCLDPSFLLQQAL-SRGKAAVFFSAT 578 Query: 399 LSVNDDLHHFTSRLGIEQAES-LLLPSPFDYSRQALLCVLRNLPQ-TNQPGSARQLAAML 456 L+ ++++ LG Q + L L SPFD ALL R + + ++ + Sbjct: 579 LT---PINYYRELLGGNQEDPVLQLNSPFDSEHLALLVHGRIRTDFKARRQTLSEVVHAI 635 Query: 457 RPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT-LPVLLQG----ETSKGQLLQQFVSAG 511 +++ +G + S + + E F++ +PVL Q E+ + L F Sbjct: 636 ATLVQERSGNYLVYFPSFLYLNAVLELFQSLYPTVPVLTQRPGMAESERETFLAAFSVEH 695 Query: 512 NALLVA----TSSFWEGVDVRGDTLSLVII--DKLPFTSPDDPLLKARMEDCRLRGGDPF 565 LV F EG+D+ GD L +I LP + L++ + + + G F Sbjct: 696 GQTLVGFAVLGGIFGEGIDLVGDRLIGAVIIGVGLPQLCAERDLIR---DYFQEKTGAGF 752 Query: 566 DEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA 624 D + + Q GR+IR DRG++++ D+R Y F P + I Sbjct: 753 DYAYTFPGMNRVLQATGRVIRSETDRGIVLLIDSRFDEWRYRKLF----PKWWHRKQIG 807 >UniRef50_D0BJL1 DnaQ family exonuclease/DinG family helicase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BJL1_9LACT Length = 873 Score = 294 bits (752), Expect = 8e-78, Method: Composition-based stats. Identities = 135/623 (21%), Positives = 244/623 (39%), Gaps = 36/623 (5%) Query: 19 KPREPQRQMAVAVTQAIEKGQPL-VVEAGTGTGKTYAYLAPALR---AKKKVIISTGSKA 74 + + Q Q+ + + + G + VEA G GKT AYL +L+ + I+T + Sbjct: 251 EYQPLQVQLIEFMLERLNFGDSINWVEAEPGIGKTLAYLLVSLQLQSQNHPIWIATSTIL 310 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILS-DVILL 133 LQ QL +++ T+ ++L + +A +KG+ +YL L L + Q S VI L Sbjct: 311 LQQQLVDQEIKTLEESLGISLPIATVKGQEHYLSLSGLAEVLEKYEQYQNQKSSLTVIGL 370 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADV 193 W T GD+S C S+ + W +T K F +A + A + + Sbjct: 371 LKWLAHTTSGDLSECNSLFYHREIWEKITRKERQ-------FSKMDFYRRAIRHARKSKM 423 Query: 194 VVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKD 253 V+ N + + P ++I DE QL + + L L + + Sbjct: 424 VITNQAFLVQYLKQTPQRDHFDKP---IVIIDEVQQLEHVLESQEQKLLEFDALWQIQME 480 Query: 254 IT---IAYRTELKDTQQLQ-KCADRLAQSAQDFRLQLGEPGYRGNLR---ELLANPQIQR 306 + E+ TQ+ Q + +R D + + + + LL+ + ++ Sbjct: 481 WNEYHLESYLEMSSTQEHQSRQINRRLLEICDLYEEWMQMIRKESYPTSVILLSAEEWEK 540 Query: 307 AF--LLLDDTLELCYDVAKLSLG---RSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 + L C D+ K + L+ + L + + + Y Sbjct: 541 SIHHQTLAAVKSACIDLLKRTFDFKCNDELVQKTHACLQKLVQEMVLLLKQEEGYVAVSY 600 Query: 362 ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL 421 ++L L + A K + +I SAT+ + L H ++Q + L Sbjct: 601 VLKKGQYSLQLESMKSALKMWREIYGYMYQFIGISATIPIFTPLFHSI----VKQEDGLF 656 Query: 422 LPSPFDYSRQALLCVLRNLPQTN---QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 LP + + + +LP + P LA L I + GRC +L S M+ Sbjct: 657 LPKTYQNFEHT-VFIPTDLPTPSIIVTPERVELLARQLLDIYQRKQGRCLVLVHSIEMLE 715 Query: 479 DLAEQFRATMTLPVLLQGETSKGQLLQQ-FVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 +L + +P+L+Q + +Q+ F + LL+ SFWEG D ++ +II Sbjct: 716 ELEQVLLEHPDIPLLVQRTNQSSRKVQRKFQQQESVLLLGVYSFWEGFDSGEVSIDQLII 775 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 KLPF +P + E+ +L+ F + L + QG+GR+ R ++ + I Sbjct: 776 PKLPFPNPTQLQQRVIAEEMKLQNRHYFQDYALEKMLQQFYQGLGRMNRPHQEKAEIWIL 835 Query: 598 DNRLVMRPYGATFLASLPPAPRT 620 D R + PY + +P + Sbjct: 836 DTRSINSPYANRVMQCIPNRAKI 858 >UniRef50_B9EC49 Putative uncharacterized protein n=1 Tax=Macrococcus caseolyticus JCSC5402 RepID=B9EC49_MACCJ Length = 850 Score = 293 bits (751), Expect = 1e-77, Method: Composition-based stats. Identities = 129/607 (21%), Positives = 228/607 (37%), Gaps = 41/607 (6%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKKVIISTGS 72 G+ RE Q +++ + + + + L +EA G GKT +YL A+ +K ++IST + Sbjct: 244 GYTFREKQCELSEHIYRQLREDSVLTIEADLGGGKTISYLLAAVYYLSTYRKSLLISTST 303 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 LQ+QL DL + ALK ++K R +YL LE L IL + Sbjct: 304 IFLQNQLIDEDLRRIEHALKIKVPFQIIKSRRHYLSLE-FVSFILNDPKENHDILLLKMQ 362 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 L + + GDI + L+TS D+ + + Sbjct: 363 LIVYMLEPHGGDIDRLNLNGGRKIYFELMTSMFDSAQHQH---------YSYQDSSETLH 413 Query: 193 VVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLA- 251 + + NH L + + +I DEAHQL D A +L+ + + + Sbjct: 414 IGITNHAHLL------NRRKDNVFNHYEHLIVDEAHQLLDYALNNSYDALNYQTIKYIIG 467 Query: 252 ---KDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF 308 K + L + +L D L E Y + + + Sbjct: 468 QTIKSVPDNTSNTLDTLVDMDFEISQLNHKIDDMFDHLLEN-YSSKSVVKVKVEENDDIY 526 Query: 309 LLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF 368 +L + + + + S + E Y + ++ + Y + + Sbjct: 527 ILFKEIHSMMSVLLSYEMDVS--IRTKLETLQRYFLSVWIQIKVYKELYIHMKNNSKSGM 584 Query: 369 TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDY 428 +L + + + + + S +F S T+ L F L + F Sbjct: 585 SLISKSIKLNEILTNRIFDRFTSKVFVSGTMQTLSFLEQFHPSL----DHFYKYENTFSK 640 Query: 429 SRQALLCVLRNLPQT---NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR 485 + A L V ++ Q + +E + + +L S+ + L Sbjct: 641 YK-ATLFVPSDIQNYHYMKQDQYIESCLQYIHYYLENMSSKVLILMNSYRQIEILRSYLV 699 Query: 486 ATMTLPVLL-Q-GETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFT 543 +++ Q + + +L +QF + N + +AT +F+EGVD + D V+I LPF Sbjct: 700 ELYDPSLIITQTSDVNTLKLNEQFNTLDNGIFLATQTFYEGVDFKYDGFKTVMIISLPFM 759 Query: 544 SPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 PDD + ++ D F + QLP AV L Q GRLIR+ D+G+L+ D RL+ Sbjct: 760 HPDDLNIMLMRDEVN----DVFMDYQLPGAVNKLHQATGRLIRNEQDKGMLICFDRRLLE 815 Query: 604 RPYGATF 610 Y + F Sbjct: 816 GRYASYF 822 >UniRef50_C8NF23 DnaQ family exonuclease/DinG family helicase n=1 Tax=Granulicatella adiacens ATCC 49175 RepID=C8NF23_9LACT Length = 875 Score = 293 bits (749), Expect = 2e-77, Method: Composition-based stats. Identities = 126/626 (20%), Positives = 241/626 (38%), Gaps = 48/626 (7%) Query: 22 EPQRQMAVAVTQAIEKGQPL-VVEAGTGTGKTYAYLAPALR---AKKKVIISTGSKALQD 77 + QR++ + + +E+ +P+ +EA G+GKTYAYL AL + + I T + LQ Sbjct: 253 DSQRKIIKKILETLEEEEPIHFIEAPPGSGKTYAYLLAALEKATNQNPIWIVTSNLLLQQ 312 Query: 78 QLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL-EQQALAGGDLPVQILSDVILLRSW 136 QLY + + ALK + +KG+ NY+ LE + + D ++ V+ L W Sbjct: 313 QLYEDSVLPIVSALKIKNPIVSIKGQRNYIDLEAFSYKISQLKNDKSPRVSLSVMGLVVW 372 Query: 137 SNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVV 196 +T GD+S C V S W + + + + KA + +++VV Sbjct: 373 ITETETGDLSECNQVLYQSSLWKDICV-------KENSKKESLYWTKAVQSVQKSNIVVT 425 Query: 197 NHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITI 256 NH FL S + +++ DE Q QY S+ L L + + Sbjct: 426 NHA-FLIHYASTMSYQTK-----PIVLLDEVQQFEHSLEQYGTVSIKFSNLFLLQQLWSD 479 Query: 257 AYRTEL----KDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRE---LLANPQI----- 304 Y + KD + L + +R D E RGN + + N + Sbjct: 480 YYLNSMTNFSKDEEHLSRTINRKLLEICDLYETWFEELNRGNYLKESIVFTNEEWIETIH 539 Query: 305 QRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECT 364 ++ + + + +++L + + + + L + +E N + + Sbjct: 540 HEMIRAFTKSIIQLMNYLQENSEKTSLFENSIQLLQEMKDSLLKFQESNHSYFVIERKDQ 599 Query: 365 SRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPS 424 + + + + I SAT+ L + ++ E+L + Sbjct: 600 YGQEMIEVLRVDSVTHVFNHFKKTIKKLIGISATIPTFTPLFY-----DLKAQENLTI-- 652 Query: 425 PFDYSRQAL---LCVLRNLPQT---NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 D + + + +L + Q+A ++ I E N GR +L S + Sbjct: 653 -MDSKVNSHAHHIFIPNDLVSVTAASSNQYHEQIAYCIQQIYERNGGRMLVLMHSIEALM 711 Query: 479 DLAEQ---FRATMTLPVLLQGETSKGQLLQQ-FVSAGNALLVATSSFWEGVDVRGDTLSL 534 + E + + +L Q + G+ +Q+ F +++L+ SFWEG D G +++ Sbjct: 712 AVEELMVNYCKRNHIELLAQKGSQLGRKIQRRFQEKSDSILLGVYSFWEGFDSGGVSINS 771 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 ++I KLPF +P + + + + F + + ++ L QG+GR R + Sbjct: 772 LVITKLPFPNPVTTHQQIVQLEMKEQNRSYFAQYSIKMMLLQLYQGLGRFSRPTQKNAEI 831 Query: 595 VICDNRLVMRPYGATFLASLPPAPRT 620 I D R + Y P + Sbjct: 832 WILDVRASISKYSDKVKNIFPESAVV 857 >UniRef50_C4GAH1 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAH1_9FIRM Length = 844 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 111/638 (17%), Positives = 217/638 (34%), Gaps = 78/638 (12%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQD 77 + R Q+++A V ++I +G+ L ++A TG GKT + L PA++A Sbjct: 217 YAYRPGQKKLASDVYRSIHRGKTLFIQAPTGAGKTLSVLFPAIKAMG------------- 263 Query: 78 QLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWS 137 ++ + + ++ K + L G + + LL+ S Sbjct: 264 ---EKEADRIFYLTAKSVTRSVAK-----DSIHLLTDGGYRGKTTEIVARDKMCLLQERS 315 Query: 138 NQTVDGDISTCVSVAEDSQAWPLVTSTN---DNCLGSDCPMYKDCFVVKARKKAMDADVV 194 D + ++ + +TS + N + + C A +D + Sbjct: 316 CNPEDCPYARGHFDRINAALYDCLTSRDLFDRNFIMEYAKQSQVCPFELCLDLASFSDNI 375 Query: 195 VVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI 254 +++ FGE E ++++ DEAH L D A Q + ++L L + Sbjct: 376 FCDYNYVFDPNASLTRFFGEGRREENLLLVDEAHNLVDRARQMYSETLFYEDFHTLRRLF 435 Query: 255 TIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDT 314 ++ + + + +D+R+ L A + + Sbjct: 436 KGKNPKLMRAAGKCSRFFSDWTRDLEDYRI-------------LDNIDSFVLALMNVASC 482 Query: 315 LELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTP 374 + + + +L+ F + + Y E ++ L L Sbjct: 483 ISVYLEEGPRLDEHEQILEIYFRIRYFL-----TVADWLDQRYRIVLEELGKNAALHLDC 537 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQAL 433 + + + + S IF SATL + ++ L + Q ++ S F Q Sbjct: 538 MDPSQLLGRRI-ELARSCIFFSATLL---PIRYYKDLLSADRQPYAVYADSVF-KEEQHG 592 Query: 434 LCVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQ--FRATM 488 L + ++ Q P + R+ A +R I A G + S+ M ++ + Sbjct: 593 LVIASDVSSRYQLRNPATYRRYADYIRRISHARQGNYMVFFPSYRFMEEVYGEFLLPDQE 652 Query: 489 TLPVLLQ----GETSKGQLLQQFVSAGNALLVA----TSSFWEGVDVRGDTLSLVIIDK- 539 VL+Q E ++ L + + L+A F EG+D+ GD+L +I Sbjct: 653 DCEVLVQEREMSEENRESFLGRLQKKRKSTLLAFCVIGGIFSEGIDLPGDSLIGAVIVGM 712 Query: 540 -LPFTSPDDPLLKARMEDCR---------------LRGGDPFDEVQLPDAVITLKQGVGR 583 LP + +LK + + F L + + Q GR Sbjct: 713 PLPQVNRQTRILKDYFDSRSSFDEDTEGLPKGIRLRERKEGFAYAYLYPGMNKVLQAAGR 772 Query: 584 LIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTR 621 +IR DRG++ + D+R + Y F R Sbjct: 773 VIRTERDRGIIALLDDRFLRGDYQDCFPREWKHYQRVS 810 >UniRef50_C5BQV4 Putative uncharacterized protein n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BQV4_TERTT Length = 802 Score = 292 bits (748), Expect = 2e-77, Method: Composition-based stats. Identities = 131/608 (21%), Positives = 222/608 (36%), Gaps = 62/608 (10%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 + P R QR+ A V + I QP+++EA TG+GKT L PA+ K Sbjct: 204 SFPFAHYRPLQRETAAEVYRHIRDKQPILIEAPTGSGKTLTALFPAI------------K 251 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 A + L+++ L SK + ++ L+ L QA D LS+ Sbjct: 252 AFGENLHTQTLYLTSKGSTQVQAESTVRQLDPEGYLDTLIIQA---RDKVCPCLSNNENT 308 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWP------LVTSTNDNCLGSDCPMYKDCFVVKARKK 187 RS + GD C P L T+ L Y C + Sbjct: 309 RS----SCTGDNGYCTRTVGFYDRLPSARNEALRTTLTKVALTEIADTYHICPFALSLHL 364 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 A V+ + + + D +V+ S F E + V++ DEAH LP A + L S Sbjct: 365 APWLSFVIADVN-YFYDPLVRLSCFDEHT-NSRVILLDEAHNLPGRARDMYSAELDSA-- 420 Query: 248 LDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA 307 ++ + +L+K +L RL P +L L+ P Sbjct: 421 -----LSEGVRKSLPRKAAKLKKAISKL---VHLLRLLDENPINEKDLTRLMYFPLQNLL 472 Query: 308 FLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH 367 L D E G SA+ +++F R + ++ + + Sbjct: 473 QALQQDEAE------AEITGSSAMPNSSFREWLKQLYRFAVMLQLLSAAHISILTKNGKE 526 Query: 368 FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPF 426 L + L + E + + S I SATL D + +LG+ Q + LP F Sbjct: 527 RVLKIRCLDASGYL-EKLQSQARSTIAFSATL---DPFNFTRQQLGLPQQTQGYRLPPVF 582 Query: 427 DYSRQALL---CVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQ 483 Q ++ + + + S L ++R + A G + S+A + A Sbjct: 583 PEENQYVICTTYIPTH--WRKRKESLNPLVELIRELTRAKPGNYLVFFPSYAYLEMAATA 640 Query: 484 FRATMTL-PVLLQ----GETSKGQLLQQFVSAGNALL---VATSSFWEGVDVRGDTLSLV 535 ++A + LQ ++ + + + F++ G L + + EG+D G L Sbjct: 641 YQAAFPETELFLQTAASSDSQRQEFINLFLNGGEPKLGFAIVGGIYAEGIDYAGTALLGA 700 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 II PDD + + G + F +I L+Q GR+IR D+G+++ Sbjct: 701 IIIGTGMPQPDDEQQQM-SQYFSRCGLNGFQYAFQFPGLIRLRQTAGRVIRTESDKGIII 759 Query: 596 ICDNRLVM 603 + RL+ Sbjct: 760 FVEPRLLR 767 >UniRef50_C4Z491 Putative uncharacterized protein n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z491_EUBE2 Length = 801 Score = 288 bits (736), Expect = 6e-76, Method: Composition-based stats. Identities = 111/631 (17%), Positives = 218/631 (34%), Gaps = 90/631 (14%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQD 77 ++ RE Q+ + V+V +AIE L ++A TG GKT + + PA++ AL Sbjct: 191 YEYREGQKNLCVSVYRAIEDSANLYIQAPTGVGKTLSTVFPAVQ------------ALGQ 238 Query: 78 QLYSRDLPTVSKALKYTG---NVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 Q+ + SK + T A+ L L + + + L Sbjct: 239 QMADKIFYLTSKTITRTVAEDTYAI------------LRDNGLHMRTVTLTAKDKICPLD 286 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTST---NDNCLGSDCPMYKDCFVVKARKKAMDA 191 + V + + + ++TS + + + C + + Sbjct: 287 ERNCNPVACPYAKGHFDRINDAVYDIITSQMVIGRDNVMEYANRHNVCPFEMSLDVSYWC 346 Query: 192 DVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLA 251 D ++ +++ + FG V + DEAH L D A + + L L Sbjct: 347 DGIICDYNYVFDPDASLKRYFGNGAKGDYVFLVDEAHNLVDRAREMYSAVLKKEDFLAAK 406 Query: 252 KDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLL 311 K + + + K + F + G + +L ++ Sbjct: 407 KLVKEMDKRLAGALDRCNKQLLEYKRQCDTFMVVSGLGTFPASLERVM------------ 454 Query: 312 DDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR-HFTL 370 ++ + K + LL+ F + + Y Y+ E + +F + Sbjct: 455 -GLMQKFMERHKGEPVTNELLEFFFA-----VRHFLNMYDCADEKYVYYNEHDNDGNFLV 508 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL-GIEQAESLLLPSPFDYS 429 L + + E + + S +F SATL +++F L G ++ S F+ Sbjct: 509 HLYCVDPSGNISERL-SQGRSTVFFSATLL---PVNYFKEMLSGDVSERAVYAHSSFEPD 564 Query: 430 RQALLCVLRNLPQTNQPGSARQLA---AMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA 486 + V ++ +AR+ A + +I +GR + S++ M + E FR Sbjct: 565 N-KRIVVATDVTSRYTRRNAREYAKVHDYIMHMISGRSGRYMVFFPSYSYMESVLECFRW 623 Query: 487 TMTLPV-----------------LLQG----ETSKGQLLQQFVSAGN------ALLVATS 519 + V L+QG E K L F V Sbjct: 624 ENGVNVTECGGEYTFLPESCVNVLVQGRFMKEADKESFLSAFYEELPEGASLAGFCVLGG 683 Query: 520 SFWEGVDVRGDTLSLVIIDK--LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITL 577 F EG+D++ ++L +I +P + +L+ ++ G + + + + + Sbjct: 684 IFSEGIDLKDESLIGAVIVGTGIPMVCRERNILRDYFDEF---GKNGYSYAYVIPGMNKV 740 Query: 578 KQGVGRLIRDADDRGVLVICDNRLVMRPYGA 608 Q GR+IR D+GV+ + D+R + Y Sbjct: 741 LQAAGRVIRTDTDKGVIALLDDRFMTGEYER 771 >UniRef50_C0D1I1 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D1I1_9CLOT Length = 829 Score = 286 bits (733), Expect = 1e-75, Method: Composition-based stats. Identities = 133/645 (20%), Positives = 244/645 (37%), Gaps = 68/645 (10%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA-----KKKVIISTGS 72 + R+ Q+ +A AV ++I++G+ L ++A TG GKT + + P+L+A K+ T Sbjct: 194 YAYRDGQKGLAAAVYRSIDQGRNLFIQAPTGVGKTLSTVFPSLKAMGEGSGDKLFYLTA- 252 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 K++ + + + + + LC+ D P + Sbjct: 253 KSITRSVAEDAFRVMRDLQQLYFTTVTITAKEK-LCVL----------DKPDCNPETCPV 301 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 + ++ D ++ L + N C AD Sbjct: 302 AKGHYDRVNDAVYDILHEEMGITRELVLEYAKRHN----------VCPFEFCLDITNWAD 351 Query: 193 VVVVNHHLFLADMVVKESGFGEL-IPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLA 251 ++ +++ V + F E P + + DEAH L A + F L L L Sbjct: 352 GIICDYNYVFDPNVRLKRYFAEGSTPGEYLFLVDEAHNLVPRAREMFSAGLLKEDFL-LV 410 Query: 252 KDITIAYRTELKDTQQLQKCADRLAQSAQDFR-LQLGEPGYRGNL---RELLANPQIQRA 307 K I + +QL++C L + F + GE G R R+ + Sbjct: 411 KRILKGKDGAERTVRQLERCNKELLNLKRAFAAEEGGEEGVRQRSVLGRDYQLLEDVNLL 470 Query: 308 FLLLDDTLELCYDVAKLSLG---RSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECT 364 +L L L R +LD F + + RL + N YS+ E Sbjct: 471 YLELSGLFSELEAFMNEHLEFGDRDLVLDFYF-QVRDFLYVHDRLDD-NYRIYSWLLE-- 526 Query: 365 SRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES-LLLP 423 F + L ++ + +E + + S +F SATL + ++ L +Q+E + Sbjct: 527 DGSFLVKLMCINPSVNLRECL-DQGRSTLFFSATLL---PIQYYKELLSGDQSEYAVYAN 582 Query: 424 SPFDYSRQALLCV--LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 SPFD + ++ + ++ + ++A + I+ A G + C S+ + + Sbjct: 583 SPFDSENRLIVAASDVSSIYRRRNRREYERVAGYIVEIVGARKGNYMVFCPSYQYLHAVE 642 Query: 482 EQF-----RATMTLPVLLQG----ETSKGQLLQQFVSAGN-----ALLVATSSFWEGVDV 527 E F R + + Q E + + L +F G+ AL V F EG+D+ Sbjct: 643 EVFVQLEERGELPFAWISQSSHMREEEREEFLARFARPGDGRSLAALCVMGGIFSEGIDL 702 Query: 528 RGDTL--SLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLI 585 + + L ++VI LP + + +L+ ++ GG F + + Q GR+I Sbjct: 703 KEEQLIGAIVIGTGLPQVNVEQEILREYFDE---HGGQGFSYAYQYPGMNKVMQAAGRVI 759 Query: 586 RDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT--RDIARAVR 628 R A D+GV+ + D+R + Y A F R++ RAV Sbjct: 760 RTATDQGVIALLDDRFLKSDYQALFPREWERYTVVNRRNVRRAVA 804 >UniRef50_A9KRY0 DEAD_2 domain protein n=2 Tax=Clostridiales RepID=A9KRY0_CLOPH Length = 852 Score = 286 bits (731), Expect = 2e-75, Method: Composition-based stats. Identities = 119/621 (19%), Positives = 224/621 (36%), Gaps = 82/621 (13%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIIS-------- 69 F+ R QR + V + I + + L +EA TG GKT + + P ++A + +S Sbjct: 262 FEYRPGQRDLVTGVYRTIIRDKKLYIEAPTGVGKTISTVFPTVKAMGEGFVSKIFYLTAK 321 Query: 70 TGSKALQD---QLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQI 126 T ++ + + QL + + L K + +C+ D P Sbjct: 322 TITRTVAEDTYQL------LLERGLSMKLVTITAKDK---ICIL----------DKPNCN 362 Query: 127 LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARK 186 + + ++ D S + S+ + C C Sbjct: 363 PAACERAKGHYDRVNDAVFDLLTSESRISRELI------EQYAMKHC----VCPFEMCLD 412 Query: 187 KAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQ 246 + AD ++ +++ V F + V + DEAH L D A + + L + Sbjct: 413 VTLWADGIICDYNYAFDPNVYLRRFFENDKKQDYVFLIDEAHNLVDRAREMYSAMLYKQD 472 Query: 247 LLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQR 306 L + + +T +K + + RL + D + L L++ + Sbjct: 473 FLTVKGIVKDKSKTMVKRLEACNEVMLRLKRGCDDIEVLQDVNDLVLPLLRLMSEYE--- 529 Query: 307 AFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR 366 + + D + D + + +I Y + + R Sbjct: 530 ------EFFKEYGDFEGREVVSQLFFDL---------RKFLAIHDILGEDYLIYSDYDER 574 Query: 367 -HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPS 424 F + L + A + K S IF SATL + ++ +LG E+ ++ PS Sbjct: 575 GEFRVKLLCMDPARNLLTCL-NKGRSSIFFSATLL---PITYYKEQLGGSEEDYAIYAPS 630 Query: 425 PFDYSRQALLCVLRNLPQ---TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 PF+ S++ LL + +++ ++ + + + A G F+ S+ M++ +A Sbjct: 631 PFEVSKR-LLMIAKDVSTKYTRRGQDEYERIVSYIEGFVNAKVGNYFVFFPSYQMLQQIA 689 Query: 482 EQFRATMTLPVLLQ----GETSKGQLLQQFVSAGN----ALLVATSSFWEGVDVRGDTLS 533 + + +LLQ GE K + L F V F EG+D++ D L Sbjct: 690 QLSEDRIP-NLLLQKTSMGELEKEEFLAAFEENPTNTKVGYCVMGGIFSEGIDLKKDRLI 748 Query: 534 LVIIDK--LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 +I LP + L + +D R G FD L + + Q GR+IR +D+ Sbjct: 749 GAVIVGTGLPQVGNERELFRGYYDD---RNGSGFDHAYLYPGINKVLQSAGRVIRTVEDK 805 Query: 592 GVLVICDNRLVMRPYGATFLA 612 G +++ D R + Y F Sbjct: 806 GAILLLDERFLNSQYKNLFPR 826 >UniRef50_Q03DH3 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03DH3_PEDPA Length = 783 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 121/630 (19%), Positives = 232/630 (36%), Gaps = 54/630 (8%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P + R QR +AVAV + I Q L VEA TGTGKT + + P + KA Sbjct: 184 FPFPEYRNGQRDLAVAVYKTILTKQRLFVEAPTGTGKTVSTMFPTI------------KA 231 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 L +++ R +K ++ +N + L +++ I + + ++ Sbjct: 232 LGEEVIERIFYLTAKQSTQHVAEEAIELMAN----QGLRIKSITITAKDRIIFPEEVDMK 287 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD----CFVVKARKKAMD 190 N + G ED+ D + Y + ++ Sbjct: 288 PEENPYMIGYYDRVKDGIEDALE------NEDKFDKAVIQTYAKKYMLDPFEFSLDLSLF 341 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 D+++ +++ D +V F + +++ + DEAH L + + + Q L + Sbjct: 342 CDLIIGDYNYLF-DPMVYLQRFFTIEDQSNFFLIDEAHNLVSRSRAMYSAVV--EQALVI 398 Query: 251 AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLL 310 T D++Q+++ +L + + + + E +++A L Sbjct: 399 QAQELFEASTTDVDSKQVKRRLTQLDNEFELIHQAF-KNQTKDYMVEYNPLDGLEKAMLN 457 Query: 311 LDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTL 370 ++ + + S +LD F + ++ E Y + + + Sbjct: 458 FNEVVREWLPKQPDNDLTSTILDLFFA-----NNKYIKISEYFDESYRILIQNPEDNIKI 512 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSR 430 L + + +K IF SATLS + ++ LG + L + SPF+ + Sbjct: 513 EEQILDPSPYLDASL-KKGRGAIFFSATLS---PVEYYQETLGSTEGLILQMASPFEEKQ 568 Query: 431 QALLCV-LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA-TM 488 Q LL + + + + A + ++EA G + S+A + +A+ F+ Sbjct: 569 QNLLITSYIDTRYAARQRNLPNIIASIATLVEAKTGNYLIFGPSYAYLNQIADAFQEMHP 628 Query: 489 TLPVLLQ----GETSKGQLLQQFVSAGNALLVA----TSSFWEGVDVRGDTLSLVIID-- 538 + V LQ + L F + + LV F EG+D+ + L V I Sbjct: 629 EIEVQLQTSQMSMEERTAFLDAFRTEKSGTLVGFAVLGGLFSEGIDLINEQLIGVGIVSV 688 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 LP S + LLK ++ + G F+ + + Q GRLIR DRG +++ D Sbjct: 689 GLPGLSTERNLLKEYFDE---KNGHGFEYAYQLPGMNHVLQSAGRLIRTRRDRGNILLMD 745 Query: 599 NRLVMRPYGATFLASLPPAPRTRDIARAVR 628 R V Y F + ++ + Sbjct: 746 QRFVTSRYLNLFPGHWKNYQKVTSVSDLQK 775 >UniRef50_Q1WV23 Superfamily II DNA and RNA helicase n=3 Tax=Lactobacillus RepID=Q1WV23_LACS1 Length = 788 Score = 283 bits (725), Expect = 1e-74, Method: Composition-based stats. Identities = 128/624 (20%), Positives = 232/624 (37%), Gaps = 64/624 (10%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P R+ Q + A AV + I + L+VEA TGTGKT + + PA++ + G+K Sbjct: 185 FPFSSYRKNQHEFAAAVYKTIALNKKLLVEAPTGTGKTISTIFPAVK-------ALGTKK 237 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 Q Y + K + T L+K L A+ + + L Sbjct: 238 CQKIFYLTAKQSTRKVAEETLQ-LLVK--------HGLSITAITLTSKEQITFPEELDLA 288 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVV 194 N G D V + + + + + + DVV Sbjct: 289 DDENPYYLGYYDRLRPALIDILTNEKVIT--RKIVENYAKKHMLDPFEFSLDISNSCDVV 346 Query: 195 VVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI 254 + +++ +V + F E + ++ DEAH L + + + +SS+Q+ DL + Sbjct: 347 ICDYNYLFDPLVKLQRFFTERNYDYTFLL-DEAHNLVSRSRDMYTKEISSQQIKDLLDKL 405 Query: 255 TIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQI----QRAFLL 310 QK D+L DF L + EP +++ ++ ++ Sbjct: 406 QTLPHPP-------QKIVDKLNTLLNDFDL-IKEPLVNYQQADVIIEEKLASLTKKIMYF 457 Query: 311 LDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTL 370 D T + + SL + LL+ F + N ++ + + + Sbjct: 458 CDFTTDWLAENPHFSL-KDDLLEFFFAAYAFVKISDYY----NNSFRTHLFITENSELLI 512 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYS 429 + L ++ + GS + SATLS L+++ G+ + + L SPFD S Sbjct: 513 RVFCLDFSELIANSL-NLGGSAVLFSATLS---PLNYYQEMFGLIDNSLLYQLSSPFDES 568 Query: 430 RQALL---CVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA 486 LL + + + S ++ + +I G + S+ ++ + F Sbjct: 569 NLNLLITSYIP--VTYQQRQQSLGKIIDAIHTMIATKQGNYLIFLPSYTFLKQVVVAFNQ 626 Query: 487 TMTL--PVLLQGETSKGQ---LLQQFVSAGNALLVA----TSSFWEGVDVRGDTLSLVII 537 V+ + + ++ Q L FV +LV SF EG+D++G+ LS V I Sbjct: 627 AYPHIDTVIQENDMTREQQEDFLNYFVENPTKILVGFAVLGGSFSEGIDLKGNRLSGVAI 686 Query: 538 D--KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 LP S + L++ + + D F + + Q GR+IR + D GV++ Sbjct: 687 VSVGLPKLSKETNELQSYFNN---KQKDGFQYAYQLPGLNNIFQAAGRVIRSSTDVGVVL 743 Query: 596 ICDNRLVMRPYGATFLASLPPAPR 619 + DNR Y F PP + Sbjct: 744 LIDNRFATSRYAKFF----PPHWK 763 >UniRef50_C7H4L4 Putative helicase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4L4_9FIRM Length = 834 Score = 282 bits (722), Expect = 2e-74, Method: Composition-based stats. Identities = 137/681 (20%), Positives = 225/681 (33%), Gaps = 87/681 (12%) Query: 12 AKAIPGFKPREPQRQMAVAVTQAIEKGQ-------PLVVEAGTGTGKTYAYLAPALRA-- 62 A P R QR +A V +A G+ L +A TG GKT + L PAL+A Sbjct: 183 ALQFPFPAYRPGQRALAGEVYRACAAGKAEQKGGTRLFCQAPTGIGKTMSALFPALKAMG 242 Query: 63 ---KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG 119 +K+ T Q + + L + CL + Sbjct: 243 EGKGEKIFYLTARNTTQAAAEDALARLRAADPALSLRSVTLSAKEK-ACLCK------DA 295 Query: 120 GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 P + + + D S +A L ++ C Sbjct: 296 EGRPACLPEACPYANGYYERLKDALADLLDSAVPYDRA----------ALTETARRHRVC 345 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 + DVV+ +++ D V F + + + + DEAH LPD A + Sbjct: 346 PFELGLDLSEWCDVVIGDYNYLF-DPTVHLRRFFDAAGDY-IFLIDEAHNLPDRARAMYS 403 Query: 240 QSLSSRQLLDLAKDI-----------TIAYRTELKDTQQLQKCADR------------LA 276 L D + I T A R L+ + + K A R L Sbjct: 404 ARFCKSSLTDARRAIGKGKSALKTALTKADRGFLEARRAVTKLAPRRGPAPTESPAEDLT 463 Query: 277 QSAQDFRLQLGEPGYRGNLRELLAN---------PQIQRAFLLLDDTLELCYDVAKLSLG 327 Q + E + L + ++ R L L+ + + Sbjct: 464 QQTSLLDTEPAEAAFPLPEPLLAQDGTVFLQELPKELLRLLFSLQAPLQDWLEANPEADA 523 Query: 328 RSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQ 387 + LL+ F + R E + L L A +A Sbjct: 524 HAQLLELYFA-----VQDITRAAERYDAHFVTQLTARGSELEWELLCLDPAPFVDASLAA 578 Query: 388 KPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLR-NLPQTNQP 446 + +F SATL+ ++ S LG A ++ L SPF L C+ + ++ Sbjct: 579 GRAAALF-SATLTPPG---YYRSVLGCPDARAVALESPFPPEHLGLYCLPGISTRYRDRE 634 Query: 447 GSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM-TLPVLLQ----GETSKG 501 S + ++ L + A G S+A +R + E F A + L Q + ++ Sbjct: 635 ASVQAVSDALAALARAKVGNYLAFFPSYAYLRQVHEDFTARYPDIGTLAQESGLDDAARA 694 Query: 502 QLLQQFVSAGNALLVA----TSSFWEGVDVRGDTLSL--VIIDKLPFTSPDDPLLKARME 555 L+QF + L+ F EGVD+ GD L ++ LP +P +L+ + Sbjct: 695 AFLEQFGPSPAKTLLGFGVMGGIFGEGVDLVGDRLIGCAIVGVGLPQVNPRQEILRRYYD 754 Query: 556 DCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 + GG FD + + Q GR+IR +DRGV+++ D+R Y F Sbjct: 755 EA---GGTGFDYAYRFPGMNKVLQAAGRVIRTQEDRGVVLLLDDRFARGEYTRLFPRHWH 811 Query: 616 PAPRTRDIARAVRFLAIPSSR 636 R + LA +R Sbjct: 812 QLQYLRSTTELEQQLAAFWAR 832 >UniRef50_D1ABA6 Helicase c2 n=4 Tax=Actinomycetales RepID=D1ABA6_THECD Length = 844 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 130/438 (29%), Positives = 186/438 (42%), Gaps = 44/438 (10%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR----AKKKVIISTGS 72 G R Q +MA AV +AI G+ L +AGTGTGK+ AYL PA+R A V++ST + Sbjct: 27 GGTERPGQVRMAEAVARAIATGEHLAAQAGTGTGKSLAYLVPAIRHAVAADTTVVVSTAT 86 Query: 73 KALQDQLYSRDLPTVSKA----LKYTGNVALLKGRSNYLCLERL--------EQQALAGG 120 ALQ QL RDLP +++A L A+LKGR NYLCL R+ E AL Sbjct: 87 IALQRQLVDRDLPRLAEALRPLLGQEPRFAILKGRGNYLCLHRVHTGAPDEPEDAALFDP 146 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG-SDCPMYKDC 179 + V L W+ QTV GD V + QAW V+ + CLG CP + C Sbjct: 147 QQLSALGRQVKRLHEWAGQTVTGDRDELVPGVSE-QAWRQVSVSARECLGAQRCPHGESC 205 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 F +AR +A A +VV NH L D + +++PE DV+I DEAH+L D + Sbjct: 206 FAEQARAEAGQAHIVVTNHALLAIDALEGR----QVLPEHDVVIVDEAHELVDRVTAAGS 261 Query: 240 QSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELL 299 +LS A+ + D +L++ A++LA +D G L E L Sbjct: 262 GALSGPAAETAARRCGRLIEEGVAD--RLKEAAEKLAALLEDL-----SAGRLDVLPEPL 314 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLK----EINQP 355 L D A +A L+ T ++ L+ ++ Sbjct: 315 GRALAALRDAAHACLTALGSDRADDPAALAARRAVRSTVEELHDTAVRMLESFEPQLAAR 374 Query: 356 GYSYWYEC----------TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDL 405 W + R TL + P+SV + + + I TSATL++ Sbjct: 375 SDVVWLDKPLTGPAAPDGPRRPPTLHIAPISVGGLLRTALFG-TRTTILTSATLTLGGSF 433 Query: 406 HHFTSRLGIEQAESLLLP 423 + G+ S P Sbjct: 434 EPLARQWGLPPLSSAQAP 451 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 83/209 (39%), Positives = 111/209 (53%) Query: 419 SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 +L SPFD+++ +L V R+LPQ + G + +IEA GR L +S R Sbjct: 623 ALDAGSPFDHAKAGILYVARHLPQPGRDGLPEAYLTEIAELIEAAGGRTLGLFSSMRAAR 682 Query: 479 DLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIID 538 AE+ R + P+L QGE + L+++F L T S W+GVDV G +L LVI+D Sbjct: 683 QAAEELRGRLGHPLLCQGEDATSLLVKRFAEEERTCLFGTLSLWQGVDVPGPSLQLVIMD 742 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 ++PF PDDP+ AR RGG+ F V A + L QG GRL+R A DRGV+ I D Sbjct: 743 RIPFPRPDDPIASARQRAVAARGGNGFMAVAATQAALLLAQGAGRLLRSATDRGVVAILD 802 Query: 599 NRLVMRPYGATFLASLPPAPRTRDIARAV 627 RL YG +SLPP T D A Sbjct: 803 PRLATARYGGFLRSSLPPFWTTTDPAVVR 831 >UniRef50_A4VLC1 Rad3-related DNA helicase n=91 Tax=cellular organisms RepID=A4VLC1_PSEU5 Length = 808 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 139/615 (22%), Positives = 223/615 (36%), Gaps = 76/615 (12%) Query: 12 AKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA--KKKV--I 67 A P + R QRQ+A AV +A G L+ +A TG GKT L P L+A +++ + Sbjct: 224 ALRFPHDEFRTGQRQLAEAVYKAACTGTTLMAQAPTGIGKTLGTLFPQLKAFPGQRLDKL 283 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 +K +L L T+ + + V L R C +A G P Sbjct: 284 FFLAAKTSGRRLALDALQTLQRNANHGLRVLELVAREK-TCEH--PDKACHGESCP---- 336 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 L R + ++ + D A V + + C +++ Sbjct: 337 ----LARGFYDRLPAARAAALGQALLDQAALREVALAH-----------QVCPYYLSQEL 381 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 A ADVVV +++ + D G ++ DEAH L D A + L R Sbjct: 382 ARWADVVVGDYNYYF-DSSALLHGLTLNNDWRISVLVDEAHNLLDRARGMYSAELDQRAF 440 Query: 248 LDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA 307 LA + L ++Q+C + L RE LA+ Q+Q Sbjct: 441 AGLASQAPAPLKWPLG---RVQRCWNELH-------------------REQLADYQVQPE 478 Query: 308 F-LLLDDTLELCYDVAKLSLGRS-ALLDAAFERATLYRTRLKRLKEINQPGYSYWYE--- 362 L L L+ LG A LDA +RA R+ E+ + Sbjct: 479 LPLKLLGALQQAVSAITDYLGEQPAGLDAKLQRAYFDAMHFCRVAELFGEHSLFDISLLP 538 Query: 363 ----CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE 418 +R L L + A +AQ S + SATLS LG+ Sbjct: 539 ATARSKARRSILCLRNVVPAPFLAPRLAQARSS-VLCSATLSPR---RFHADMLGLPAGS 594 Query: 419 S-LLLPSPFDYSRQALLCVLRNLPQTN--QPGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 + + + SPF SRQ +C+ ++ + S + ++ G +S Sbjct: 595 AWIDVESPFQ-SRQLRVCLAEHVSTRYQHRQASLGAVVELIARQYRERPGNYLAFFSSFD 653 Query: 476 MMRDLAEQFRATM-TLPVLLQ----GETSKGQLLQQFVSAGNAL--LVATSSFWEGVDVR 528 ++ +A R +P Q E ++ L +F + V +F EG+D+ Sbjct: 654 YLQQVAALLREQCPDVPFWEQTRGMQEAARNAFLDRFTEHSEGIGFAVLGGAFAEGIDLP 713 Query: 529 GDTLSL--VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIR 586 G L V LP +P + K R+++ RG +D L + + Q GR+IR Sbjct: 714 GQRLIGAFVATLGLPQVNPVNEQFKIRLDELFGRG-HGYDYTYLYPGLQKVVQAAGRVIR 772 Query: 587 DADDRGVLVICDNRL 601 D GV+ + D+R Sbjct: 773 TQQDEGVVHLIDDRF 787 >UniRef50_D1VTJ3 DEAD family protein n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTJ3_9FIRM Length = 765 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 135/634 (21%), Positives = 234/634 (36%), Gaps = 98/634 (15%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKK--------- 65 P R QR+MAVAV I K L V+A TG GK+ + + P+++A + Sbjct: 187 FPFKNYRVGQREMAVAVYNTISKTNKLFVQAPTGIGKSMSVIFPSIKAIGEDKLDKIFYL 246 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ 125 V STG QD L+ + + L+ K + +C+ ++ D P Sbjct: 247 VSRSTGKITAQDSLFK----LMDRGLRIKYLTLTAKEK---ICIN--DEVKCNPKDCPFA 297 Query: 126 ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKAR 185 G D + V + + ++ C Sbjct: 298 ----------------KGHFDRVNDAIID--IFDSVDEFKRSNIEKYSRLHLVCPFEFQL 339 Query: 186 KKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSR 245 A +D ++ +++ D +V F E E+ V + DEAH L D A + + + Sbjct: 340 DLANFSDFIIGDYNYAF-DPIVYLKRFFEGSLESYVFLIDEAHNLVDRAREMYSAEFNLN 398 Query: 246 QLL----DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLAN 301 L+ L K + I LK + A S Q F N Sbjct: 399 DLMLLDEYLPKSLKINRANNLKAISEFNLLAKTRFFSYQAFE---------------NLN 443 Query: 302 PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 +++ L+D L + +L+ F + ++ + + Sbjct: 444 EALEKLMYSLNDYLIKYKEDEHY----DEILNIYFNLFS-----YNKIYQYYNKDFVSVK 494 Query: 362 ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-AESL 420 E T+ + L D FK+ + S +F SATL + L ++ + LG ++ Sbjct: 495 EEN----TIKILCLDSGDIFKDFLKNARAS-VFFSATL---EPLKYYGNLLGADENTYYY 546 Query: 421 LLPSPFDYSRQALLCVLRN----LPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 + SPFD ++ L VLR+ + + +L+ E G S+A Sbjct: 547 KIKSPFDTNK---LLVLRDKKILTTYRYRKNFVADIVRLLKLFTE-KKGNYIFFFPSYAY 602 Query: 477 MRDLAEQFRATMTLPVLLQG----ETSKGQLLQQFV--SAGNALLVATSSFWEGVDVRGD 530 M + E+++ + V++Q ET + + L +F A V +F EG+D+ G Sbjct: 603 MEMVYEEYK-KIDEKVIIQSRQMTETDRSEFLLKFKFQEDLRAFAVMGGAFSEGIDLLGK 661 Query: 531 TLSLVII--DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 L V I +P S + +LK + +G +D + ++ + Q GR+IR Sbjct: 662 RLIGVAIISVGIPQISFERNILKNHFQKKLKKG---YDYAYIYPGMVKVNQSGGRVIRSE 718 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD 622 DD+GV+++ D R + PY LP D Sbjct: 719 DDKGVVLLIDKRFSIEPYSKL----LPSHWIVED 748 >UniRef50_B8DGR4 Helicase c2 domain protein n=17 Tax=Listeria RepID=B8DGR4_LISMH Length = 779 Score = 282 bits (721), Expect = 3e-74, Method: Composition-based stats. Identities = 114/635 (17%), Positives = 219/635 (34%), Gaps = 59/635 (9%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P R QR++A+AV + + + L EA TG GKT + L P++ KA Sbjct: 182 FPYDNYRSGQRELAIAVYRTVASEESLFCEAPTGIGKTMSTLFPSV------------KA 229 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 + + + +K + L+ + ++ LA + + + L Sbjct: 230 MGEGKTDKLFYFTAKTITRQVA---------EDALDEMRRKGLAARSVTITAKDKICFLD 280 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTSTN---DNCLGSDCPMYKDCFVVKARKKAMDA 191 + + + + ++ + + S Y C + A+ Sbjct: 281 ERKCEPDHCQFARGYYDRLNEALFDMLQTEEAITRPIVESYARKYTLCPFELSLDVALFC 340 Query: 192 DVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLA 251 DV+V +++ D VV F P + DE H L D A + +L ++ + Sbjct: 341 DVIVCDYNYLF-DPVVYLKRFFAEGPGKYTFLVDEVHNLVDRARSMYSATLKKSLVMQVK 399 Query: 252 KDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLL 311 + + + K ++L + + + +L + +++ + L Sbjct: 400 RGL------DSKKNKRLLNAINAMNKEMIALNKKLKDLEKTIYVQK-DELGDWNASVLKF 452 Query: 312 DDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLA 371 + S ++ +L+ FE R + E Y + + Sbjct: 453 TFVAKEWLPQNAQSESQADVLELYFE-----SLRYVAIAEFYDDRYVTQVTRSHGDLEIK 507 Query: 372 LTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES-LLLPSPFDYSR 430 L A E + + S + SAT+ + ++T+ LG ++ S ++ SPF + Sbjct: 508 QLCLDPAFLLSEKL-KLGSSSVLFSATMR---PIDYYTNVLGGQEDTSRMIFSSPF-KQK 562 Query: 431 QALLCVLRNLPQTN--QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 L V + + S + L + G S ++ + + F+ Sbjct: 563 NMHLLVADYISTKYQMRENSMEAVVDALYALASGKKGNYLFFFPSFLYLQKVYDLFKEKY 622 Query: 489 T-LPVLLQ----GETSKGQLLQQFVSAGNALLVA----TSSFWEGVDVRGDTLSL--VII 537 + Q E + L+ F + LV F EGVD+RG+ L V+ Sbjct: 623 PNIRSQKQETAMDEEQREHFLENFQAGNEESLVGFCVLGGVFSEGVDLRGERLVGAAVVG 682 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 L + + L+K + RG FD + + Q VGR+IR D GV+++ Sbjct: 683 VGLAQLNHESDLIKDYYNETIGRG---FDYAYQIPGMNKVLQAVGRVIRGESDCGVVLLI 739 Query: 598 DNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAI 632 + R Y A F A A + R +A Sbjct: 740 EERFSADRYRALFPAHWNHAKTVKSTDDISREVAG 774 >UniRef50_B8HIV9 Helicase c2 n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HIV9_ARTCA Length = 749 Score = 281 bits (720), Expect = 4e-74, Method: Composition-based stats. Identities = 163/709 (22%), Positives = 268/709 (37%), Gaps = 114/709 (16%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 M +L+ IP R Q + + AI + A TG GK+++ LAPA+ Sbjct: 2 MQKTLTETVRLSTGIPTADARPGQVALLDDIEAAIRATGHVCGVAPTGVGKSFSLLAPAM 61 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPT----VSKALKYTGNVALLKGRSNYLCLERL 112 + ++ IIST S AL Q+ +D P K VA+LKG SNY+C + Sbjct: 62 VAAAKYDQRTIISTESLALLSQILLKDAPVAAAACEKVTGTRPKVAVLKGFSNYVCSQSA 121 Query: 113 EQQALAGGDLPVQ------ILSDVILLRSWSNQTVDG---DISTCVSVAE---------- 153 A D Q + S + L + N +DG D + V + Sbjct: 122 RDAAEQLTDTVGQRPSLPSLRSKLKRLANQKNVFLDGRPFDAANGVPLLLWALSLAADQA 181 Query: 154 ----------DSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLA 203 + W V+ C+G CP++ C AR KA +AD+VV NH + Sbjct: 182 GDKQSYEGVTTPELWDAVSVGPSECIGDTCPIFDLCKPRAARAKAAEADIVVTNHSMLAV 241 Query: 204 DMV--VKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTE 261 V + + E +++ DEAH LP +S+ ++ L K ++ Sbjct: 242 QAAKGVPVIIGNKTLGEFHIIMIDEAHALPANVRSAGASEVSAAAVMSLTKSVSRTLDES 301 Query: 262 LKDTQQLQKCADRLAQSAQDFRLQLGE---PGYRGNLRELLANPQ--------IQRAFLL 310 +L K + LA +D ++ + PG ++E + R+ Sbjct: 302 DPAVGRLIKEGNALAIELEDELAEMAKYTKPGEVCKIKETADPVETTGDMMIGWARSVKN 361 Query: 311 LDDTLELCYDV-----AKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTS 365 D + ++ AK GR A + L+R R E P + + + Sbjct: 362 ALDGVSKSKNIQSKLKAKRLAGRLDAFIGAVGQVKLHRIGTARWIEQKTPPAN--AKVQT 419 Query: 366 RHFTLALTPLSVADKFKELMAQKPG----------------------------SWIFTSA 397 ++ +P++++ + + P + I SA Sbjct: 420 PYWCANASPVNISGLLQANLWTAPVMVDEEDEMVQAMKEAGEPIEEETETYPMTVIAVSA 479 Query: 398 TLSVNDDLHHFTSRLGIEQAESLLLPSPFDYS-RQALLCVLRNLPQT------------- 443 TL F ++G+ AE++ PSPFD + +LL + + P+ Sbjct: 480 TLP-----SRFGYQVGLT-AENVAYPSPFDKAYDDSLLYIPKLTPEEIPEMFPGWRPGTK 533 Query: 444 ---NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA--TMTLPVLLQGET 498 N ++EAN G +L + + A R V Q + Sbjct: 534 GKFNGALHQAWATKKNVELVEANMGSALILSANSTAGKAYAAALRRAAKGRWNVYSQWDG 593 Query: 499 -SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFT--SP-DDPLLKARM 554 S QL + ++LV T SF GVD +G T SLV ID++P +P DD ++A M Sbjct: 594 LSTQQLTNLWRDDVKSVLVGTKSFMTGVDAKGRTCSLVTIDRIPRAAGNPVDDARVEAIM 653 Query: 555 EDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 + ++ V + DA + L+Q +GRLIR D G+ I D R++ Sbjct: 654 DALQIGKWAADTYVYVSDAALLLEQALGRLIRSVSDFGMAAILDPRMLK 702 >UniRef50_C5EU12 DEAD_2 domain-containing protein n=7 Tax=Firmicutes RepID=C5EU12_9FIRM Length = 809 Score = 279 bits (715), Expect = 2e-73, Method: Composition-based stats. Identities = 121/616 (19%), Positives = 225/616 (36%), Gaps = 65/616 (10%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA-----KKKVIISTGS 72 + R+ Q+++AV V ++I + + L ++A TG GKT + + P+L+A +K+ T Sbjct: 196 YPYRDGQKELAVDVYRSIARKRNLFIQAPTGVGKTLSTIYPSLKAMGEGHGEKLFYLTA- 254 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 K + + + K N + + LC+ + P I Sbjct: 255 KTITRSVAEDAFSILRKESGLYFNTVTITAKEK-LCIM----------EKPDCNPQACIR 303 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 + ++ D V + Y+ C + D Sbjct: 304 AKGHYDRVNDAVYEIIGDVDG----------ITREKVLEYAKRYQICPFEFCLDISNWVD 353 Query: 193 VVVVNHHLFLADMVVKESGFGELIPEADVM-IFDEAHQLPDIASQYFGQSLSSRQLLDLA 251 ++ +++ V + F + P + + DEAH L A + + SL +L + Sbjct: 354 GIICDYNYVFDPNVRLKRYFDQGEPGQGYLFLVDEAHNLVPRAREMYSASLIKEDVL-MV 412 Query: 252 KDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYR----GNLRELLANPQIQR- 306 + I + K QL +C + + + GE G+ ELL + + Sbjct: 413 RRILKSQTGAGKVLTQLDRCNQKFLDIKRAYGSDSGEGVIHRQVLGSDYELLPDVNLLAL 472 Query: 307 AFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR 366 + + LE + R +LD F R L ++ Y Sbjct: 473 QLMTMFGELESFMNENVEFGDRDLVLDFYFA----VRDFLYVYDRLDDNYRIYARLLPDG 528 Query: 367 HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL-GIEQAESLLLPSP 425 HF + L ++ A KE + + S +F SATL + ++ L G ++ ++ SP Sbjct: 529 HFMVRLLCMNPAVNLKECL-DRGNSTLFFSATLL---PIQYYKELLSGSQEEYAVYAKSP 584 Query: 426 FDYSRQALLCVLRNLPQTNQPGSA---RQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 F + L+ ++ SA ++A + I+E G + C S+ + + Sbjct: 585 FPEENR-LVLAASDVSSRYSRRSAYEYEKIADYICRIVEGKRGNYMVFCPSYQYLYAIEG 643 Query: 483 QFRAT-----MTLPVLLQ----GETSKGQLLQQFVSAGN----ALLVATSSFWEGVDVRG 529 + L Q E + + L+ F AL V F EG+D++ Sbjct: 644 ILARRQEEGGLAFTWLAQKNRMTEEEREEFLRSFDGEREQSMAALCVMGGIFSEGIDLKE 703 Query: 530 DTLSLVII--DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRD 587 D L +I LP + + +LK ++ GG FD + + Q GR+IR Sbjct: 704 DRLIGAVIIGTGLPQVNTEQEILKDYFDE---HGGCGFDYAYQYPGMNKVMQAAGRVIRT 760 Query: 588 ADDRGVLVICDNRLVM 603 D+GV+ + D+R + Sbjct: 761 IHDKGVIALLDDRFLR 776 >UniRef50_D2MI55 Helicase c2 n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MI55_9BACT Length = 257 Score = 279 bits (713), Expect = 3e-73, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 132/229 (57%), Gaps = 9/229 (3%) Query: 394 FTSATLSVNDDLHHFTSRLGI---EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSAR 450 TSA+L+V+ + +G+ E+ L++ SPFD+ Q+LL V ++P+ + Sbjct: 1 MTSASLAVDKNFDFQRKNIGLSDNERFRGLIVDSPFDFRTQSLLLVPSDMPEPGREDYED 60 Query: 451 QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM------TLPVLLQGETSKGQLL 504 LA +L I NG +L TS++ + + E+ + + + QGE + LL Sbjct: 61 SLARILSDSISVTNGNALVLFTSYSSLNRVYEKTGKILERIGAVPVSLFKQGEMPRSLLL 120 Query: 505 QQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDP 564 ++F + GN++L AT SFWEGVD+ GD+L +V+I +LPF P DP+ +A++E + D Sbjct: 121 EKFKTLGNSVLFATDSFWEGVDIPGDSLRMVVICRLPFKVPTDPVTEAKIEYMERQDIDS 180 Query: 565 FDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLAS 613 F E LP AV+ KQG GRLIR DRGV+++ D R+V + YG F+ S Sbjct: 181 FREYILPHAVLRFKQGFGRLIRTKTDRGVVMVLDKRIVSKYYGKFFINS 229 >UniRef50_B3W8P1 Superfamily II DNA and RNA helicase n=11 Tax=Lactobacillus RepID=B3W8P1_LACCB Length = 794 Score = 276 bits (705), Expect = 3e-72, Method: Composition-based stats. Identities = 121/636 (19%), Positives = 224/636 (35%), Gaps = 62/636 (9%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P + R Q ++A AV +AI L V+A TGTGKT + L P L+A +I Sbjct: 187 FPFPQFRAGQHELAAAVYKAIYSQARLFVQAPTGTGKTISALFPTLKAMGTGLI------ 240 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 Q Y + + + + + Q L + + + Sbjct: 241 -QRAFYLTAKQSTRRVAEQAMAL--------------MAQAGLTAKSITLTAKDTITFAD 285 Query: 135 SWSNQTVD----GDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMD 190 + + + G D + + ++ + ++ Sbjct: 286 EPDDPSKNPYMLGYYDRLKPALHD--LLEHEDQLTRPVIETYARKHRLDPFEFSLDASLF 343 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 DV++ +++ D +V F +++ + DEAH L A + +++ + + L Sbjct: 344 CDVIICDYNYLF-DPLVFLQRFFSEKDDSNFFLIDEAHNLVSRARDMYTAAITDQDFVQL 402 Query: 251 AKDITIAYRTELKDTQQ-LQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFL 309 K +T L ++ + + + L + L +L A Sbjct: 403 KKALTPYKGAPLTKVRRAMTRILNTLDATTSTLLTSQPTIFQDDPLDDLTA--------- 453 Query: 310 LLDDTLELCYDVAKLSLGRSALLDAAFERAT---LYRTRLKRLKEINQPGYSYWYECTSR 366 +L E+ +D LS + L A + + R+ + + + Sbjct: 454 VLFRFTEVVHDW--LSEPPTPALQPAVDLVLPVFFLANQYLRIGDFYDATFKTEVTKENG 511 Query: 367 HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG-IEQAESLLLPSP 425 + L + E + +K + SATLS + +F LG I+ + + LPSP Sbjct: 512 QIMVKELCLDPSQFVDEAL-KKGRGAVLFSATLS---PMAYFQKLLGGIDNSLAYTLPSP 567 Query: 426 FDYSRQALLCVLR-NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF 484 FD ++QA++ N + QL A L ++ +G S+A ++ E F Sbjct: 568 FDPAKQAVIVDASVNTTYRRRTQDLPQLIASLTTLVRTKSGNYLFFFPSYAYLKTAYEAF 627 Query: 485 -RATMTLPVLLQG----ETSKGQLLQQFVSAGNALL---VATSSFWEGVDVRGDTLSLVI 536 A L V Q E + L F + ++ V F EG+D++G+ L V Sbjct: 628 TAANPDLKVCAQENAMTEADRQTFLDHFQTGSEPIIGFAVLGGIFAEGIDLKGNRLIGVA 687 Query: 537 I--DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 I LP + + L+A + G F + Q GR+IR D GV+ Sbjct: 688 IISVGLPGINAETDQLRAYFD---RANGQGFAYAYQLPGFNNVLQAGGRVIRGTKDVGVI 744 Query: 595 VICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 ++ D R + Y F A + + + + L Sbjct: 745 LLIDERFITPRYARLFPDHWTHAQVSYNPTQLAQLL 780 >UniRef50_Q0BQ29 ATP-dependent helicase, DinG family n=3 Tax=Rhodospirillales RepID=Q0BQ29_GRABC Length = 968 Score = 274 bits (702), Expect = 5e-72, Method: Composition-based stats. Identities = 163/721 (22%), Positives = 254/721 (35%), Gaps = 146/721 (20%) Query: 37 KGQPLVVEAGTGTGKTYAYLAPALRAKKK----VIISTGSKALQDQLYSRDLPTVSKALK 92 ++ EAGTGTGKT Y+APA ++ V IST ++ LQ Q+ + Sbjct: 242 DPHLVLAEAGTGTGKTLGYIAPASLWAERNHGSVWISTYTRHLQRQIEGELARLFPDPVI 301 Query: 93 YTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVD-----GDIST 147 L KGR NYLCL E + L + LL W+ T D GD+ Sbjct: 302 RRQKTVLRKGRENYLCLLNFEDAVASVAGLAHTRTIPLALLARWALVTEDGDLQGGDLPG 361 Query: 148 CVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVV 207 + P + C+ + C +K CFV + ++A AD+VV NH L +A V Sbjct: 362 WLPELFGGGLLPALADRRGECIHAGCGHWKKCFVEHSIRRARGADLVVANHALVMAQAV- 420 Query: 208 KESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIA---------- 257 G + +FDE H + D A F LS + +L + + A Sbjct: 421 --WGGLDDTTVPTRYVFDEGHHVFDAADGAFSAILSGMETAELRRWLRGAEGGRSRARGL 478 Query: 258 ---YRTELKDTQQLQKCAD----------------RLAQSAQDFRLQ------------- 285 + D LQ + RLA++AQD + Sbjct: 479 RRRLEELVADDPDLQAPLEAALTAATALPPQGWQMRLAEAAQDAQEHPDSSPGNILLPDL 538 Query: 286 LGEPGYRGNLRELLANPQIQRAFLLLDDTLEL--------CYDVAKLSLGRSALLDAAFE 337 G R N E L + ++A +D EL + V +A+LD A + Sbjct: 539 GGIEAGRQNPAEALLHLLRRQALARSNDKTELPRTAIEADLHPVLPELPDAAAVLDRALD 598 Query: 338 RA---------------------------------------------TLYRTRLKRLKEI 352 R + +RT L ++ Sbjct: 599 RILQPLKTLRQRLADRLESESDTLDQPTRSRIEATCRSLGRRAIDPLSAWRTMLLAIQSP 658 Query: 353 N-----QPGYSYWY-----ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVN 402 +P + ++ + R L L F +A + TSATL Sbjct: 659 PPEAGLRPEHVHFIRLQRGDTGDRDVGLHRHWLDPTIPFTATLASPAHGLLITSATLRDG 718 Query: 403 D------DLHHFTSRLGIEQ----AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQL 452 +++G A L SPFDY+ Q ++ ++ +A Sbjct: 719 GMEDQAAAWEAAEAQVGAPHLPSPAIRAALASPFDYATQTRAFIITDVGYELAALAAAY- 777 Query: 453 AAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQGET--SKGQLLQQF 507 R + A G L T+ +R + + T+ + VL Q L+ F Sbjct: 778 ----RTLFLAAGGGGLGLFTAITRLRAVHARIAPTLEAEGIQVLAQHVDAMDNTTLVDVF 833 Query: 508 VSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDE 567 + ++ L+ T + +GVDV G L LV +++P+ PD L + R +DE Sbjct: 834 RTEIDSCLLGTDAMRDGVDVPGRALRLVAFERVPWPRPDI-LHRERRIHLSGGMPSAYDE 892 Query: 568 VQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAV 627 + L+Q GRL+R A DRGV ++ D R R L++ PP R + A Sbjct: 893 RI---TRMRLRQAFGRLVRSASDRGVFILLDRRTPSR-----LLSAFPPGVTVRRVGLAE 944 Query: 628 R 628 Sbjct: 945 A 945 >UniRef50_Q6MR44 Similar to ATP dependent helicase n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MR44_BDEBA Length = 792 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 124/619 (20%), Positives = 230/619 (37%), Gaps = 60/619 (9%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKKKVIIS 69 + P PR QR++ + + PL+V+A TG GKT L P +L +K + Sbjct: 187 SFPFATPRPGQRELIEGIEAQVADEHPLLVQAPTGLGKTVGVLYPNLKDSLSRGQKTVYV 246 Query: 70 TGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSD 129 T K Q + + + + L +S +CL+ + Sbjct: 247 TP-KNSQHIVAEEAVEKLQEQ-GSKIRSLTLTAKSK-MCLKA----------ETLCNPGY 293 Query: 130 VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAM 189 R + + + D+ +S +T +G + ++ C + + Sbjct: 294 CEFARDYYTKLAEHDLVNKLSKK------RKLTQEKLVEMGKE---FEVCPFELSVEAIE 344 Query: 190 DADVVVVNHHLFLADMVVKESGFGELI--PEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 ADVV+ +++ A + L+ E ++ DEAH LP A YF SLS ++L Sbjct: 345 RADVVIGDYNYAFAPRSLLGRLSEPLLEAGEKPNLVIDEAHNLPSRAQDYFSPSLSVQEL 404 Query: 248 LDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA 307 L D T T L + A L Q GE G G+ + + Sbjct: 405 DILEGDFTKLPPTFSLQAGSLIRKAKSLIQEY-------GEDG--GSRKVDIDIEPFLEH 455 Query: 308 FLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH 367 + D + R +L R + E P + Y+ + Sbjct: 456 ERSIRALTTEYLDSDTEIITRDPML-----RLMNLWSEFIAALEYRGPEFFTTYQNSRFT 510 Query: 368 FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG--IEQAESLLLPSP 425 L +T +++ K + ++ + + SATL ++ LG +E++++L SP Sbjct: 511 EMLKVTCCDASEQLK-IAYKQFKNVVAFSATL---KPFTYYQELLGFDLEKSKTLEFQSP 566 Query: 426 FDYSRQALLCVLR-NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF 484 F + L+ + + + +++ S+ ++A ++ + G L S + + +Q Sbjct: 567 FKPENRQLMIIPQISTKLSDRVVSSGKVAEVISRVTRVKAGNYIALFPSFEFLAQVEKQL 626 Query: 485 RATMTLPVLLQGETSKGQ----LLQQFVSAGNALLVAT---SSFWEGVDVRGDTLSL--V 535 + L VL Q K L++ +A +L+ F EGVD GD L V Sbjct: 627 QV-PHLRVLRQERDMKQLDVQIYLEELKAANEPILLLGVQGGVFSEGVDFPGDMLIGAFV 685 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 I LP + ++ + + + F+ + A+ Q GR+IR D+GV++ Sbjct: 686 IGPALPSFDFEREQIRTYFDGRYGK-ENGFNYTYVYPAMAKAIQSAGRVIRSETDKGVII 744 Query: 596 ICDNRLVMRPYGATFLASL 614 + D+R + Y Sbjct: 745 LMDSRFLNPVYAEAMPQGW 763 >UniRef50_C6LHG2 Putative helicase n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LHG2_9FIRM Length = 915 Score = 272 bits (696), Expect = 3e-71, Method: Composition-based stats. Identities = 122/720 (16%), Positives = 236/720 (32%), Gaps = 133/720 (18%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA-----KKKVIISTG- 71 + RE Q+ +A AV + I + + L ++A TG GKT A + PA++A K+ T Sbjct: 189 YPYREGQKDLAAAVYRTIAREKKLFIQAPTGVGKTIATVFPAVKAVGEGLGDKIFYLTAK 248 Query: 72 --SKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCL-------------------- 109 ++ + + +S + KA V L + +CL Sbjct: 249 TITRTVAQEAFS-----LLKAQGLQYKVLTLTAKEK-ICLCGEPDCNPEKCPYAQGHFDR 302 Query: 110 ---------------------ERLEQQALAGGDLPVQILSDVILLRSWSNQTVDG----D 144 ER +Q+ P + + +T + + Sbjct: 303 VNDAVYELLTGWGKPDAGEQAERGKQKPEEPECGPEIPEGMRMPAEHGTEKTEEPACGPE 362 Query: 145 ISTCVSVAEDSQAWPLVTSTNDNCLGSDC----PMYKDCFVVKARKKAMDADVVVVNHHL 200 I V + ++ D+ + ++ C + ++ D V+ +++ Sbjct: 363 IPEGVRTPAERPEEQEISGLRDSYTRENLIAHAKKWQVCPFEMSLDLSLWVDAVICDYNY 422 Query: 201 FLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRT 260 + F + + + DEAH L + + + +L L++ + + R Sbjct: 423 VFDPQARLKRFFADGGRGDYIFLIDEAHNLVERGREMYSAALYKEDFLEMKRLLAPVSRK 482 Query: 261 ELKDTQQ---------------------------LQKCADRLAQSAQDFRLQL------- 286 + + L + +L +D L Sbjct: 483 AARALDKCNKYMLEWKRDCEGYSLCSDIAVFALALLNVSTQLETLLEDGDSPLNRYQTQP 542 Query: 287 -----------GEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAA 335 + + +L EL + R +L+ Sbjct: 543 ESVYGAGTHRQQRSARGAQAHRQPEDGSYAQEYLPGMQPEELPQAPETGAELRKKVLEFY 602 Query: 336 FERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFT 395 F+ R+ L +E+++ Y F L L + A K E + + + +F Sbjct: 603 FQ----VRSFLAIYEELDESYEIYTEHEADGRFKLKLFCIDTAGKIGECL-DRGRAAVFF 657 Query: 396 SATLSVNDDLHHFTSRL-GIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQ--PGSARQL 452 SATL + ++ L G ++ ++ SPFD ++ +L + + P +++ Sbjct: 658 SATLL---PIRYYMDLLSGTQEDYAIYAHSPFDLKKKKVLVGTDVSSRYTRRGPEEYQKI 714 Query: 453 AAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM-TLPVLLQG----ETSKGQLLQQF 507 AA + +EA G + S+ M+ D+ F A + V+ Q E + + L F Sbjct: 715 AAYIHCAVEARAGNYLVFFPSYKMLEDIRAVFEAAYTDVRVIAQNPRMTEEEREEFLACF 774 Query: 508 VSAGN----ALLVATSSFWEGVDVRGDTLSLVIIDK--LPFTSPDDPLLKARMEDCRLRG 561 V F EG+D++ L +I LP + +LK + R Sbjct: 775 SENNTQTLAGFCVLGGIFGEGIDLKRKKLIGAVIVGTGLPQICNEREILK---QYYDRRS 831 Query: 562 GDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTR 621 D F + + Q GR+IR +D GV+++ D R R Y F Sbjct: 832 MDGFAHAYQYPGMNKVMQSAGRVIRTDEDTGVILLLDERFCRRQYLDIFPREWADYETCS 891 >UniRef50_A8SGA1 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SGA1_9FIRM Length = 829 Score = 271 bits (693), Expect = 6e-71, Method: Composition-based stats. Identities = 125/665 (18%), Positives = 214/665 (32%), Gaps = 87/665 (13%) Query: 12 AKAIPGFKPREPQRQMAVAVTQAIEKGQ--------PLVVEAGTGTGKTYAYLAPALRA- 62 A P K R QR +A V +A G+ + +A TG GKT + L PAL+A Sbjct: 183 ALQFPFAKYRPGQRALAGEVYRACRAGKSADRKGGTRVFCQAPTGIGKTMSALFPALKAM 242 Query: 63 ----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALA 118 K+ T Q + L + CL Sbjct: 243 GEGCGAKLFYLTARNTTQAAAEDAVARLRTAQPGLALRSVTLTAKEK-ACLH------PD 295 Query: 119 GGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 P + + ++N D ++ + S ++ L + Sbjct: 296 AEGHPACLPE----VCPFANGYYDRRKDALAALLDGSGSFSRAA------LADTARQFSV 345 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYF 238 C + DVV+ +++ +V + F + + DEAH LPD A + Sbjct: 346 CPFELGLDLSEWCDVVIGDYNYLFDPVVHLKRFFDAAGDW--LFLIDEAHNLPDRARAMY 403 Query: 239 GQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRL----------------------- 275 + L + + + + + K Sbjct: 404 SAQFAKSSLTEAKRALGKGKSSLKTALTKADKVFLAARKACAQAAPRTGAEPAGETEPAQ 463 Query: 276 -----AQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSA 330 A++A DF L G + + A + L+ + + Sbjct: 464 VSLLPAEAAPDFALPQPLYARDGTVFLQQLPAALPAALRAVHTPLQDWLEQNPEDPAHAQ 523 Query: 331 LLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPG 390 LL+ F + R + + L L L A +A Sbjct: 524 LLELYFA-----LQDIARAADRYDSHFVTQLTARGSELELHLLCLDPAPFVDASLAAGRC 578 Query: 391 SWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLR-NLPQTNQPGSA 449 + +F SATL+ + S LG A ++ LPSPF L C+ + + S Sbjct: 579 AALF-SATLTPP---AFYRSVLGCADARAVALPSPFPPENLGLFCLPGISTRYRQREASV 634 Query: 450 RQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM-TLPVLLQ----GETSKGQLL 504 +A L + G S+A ++ + E F A +P L+Q + + + L Sbjct: 635 PAVADALAALARGKTGNYLAFFPSYAYLQQVYEAFAARWPDIPTLVQQRSLDDAGRAEFL 694 Query: 505 QQFVSAGNALLVA----TSSFWEGVDVRGDTLSL--VIIDKLPFTSPDDPLLKARMEDCR 558 QFV L+ F EGVD+ GD L ++ LP +P +L+ E+ Sbjct: 695 AQFVPRLAKTLLGFAVMGGIFGEGVDLVGDRLIGCAIVGVGLPQVNPRQEMLRRYYEE-- 752 Query: 559 LRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 + G FD + + Q GR++R D+GV+++ D+R F P Sbjct: 753 -QSGCGFDYAYRYPGMNKVLQAAGRVVRTPQDKGVVLLLDDRFAQPDTARLFP---PHWQ 808 Query: 619 RTRDI 623 + + Sbjct: 809 HIQYL 813 >UniRef50_A6UVN5 Helicase domain protein n=1 Tax=Methanococcus aeolicus Nankai-3 RepID=A6UVN5_META3 Length = 706 Score = 269 bits (689), Expect = 2e-70, Method: Composition-based stats. Identities = 138/687 (20%), Positives = 255/687 (37%), Gaps = 129/687 (18%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---RAKKKVI 67 + P ++PR Q++M ++ +I + LVVEA TG GKT +YL P+L + K+V+ Sbjct: 15 YSSNFPYYEPRPQQKKMMESIFYSIVNKKNLVVEAPTGVGKTLSYLLPSLYFAKQGKRVM 74 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 I T + Q++++ DL ++ L V+ + G+ N+ C + ++ Sbjct: 75 ILTETIDQQERIFE-DLNSLKHNL----KVSFMMGKGNFYCKAKEDKAN----------R 119 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 + S++ C + E + ND+ CP C KA+ + Sbjct: 120 LYCQYNKKCSHRPNKKPYCNCGTKKE-------IIKLNDDEPKYYCPF-CICDYQKAKIQ 171 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 +DAD++V+N+ ++ +K+ ++ D++I DEAH+L S++ Sbjct: 172 GLDADIIVMNNSIY---YYIKDEI--DVKRNTDIIICDEAHKLEGSIRNSATISINPDNA 226 Query: 248 L--------DLAKDITIAYRTELKDT-QQLQKCADRLAQSAQDFRLQL------------ 286 L + A + Y L D +Q + +RL Q + + Sbjct: 227 LNRLRIMAYNYAPNTIKKYIKRLNDEYEQYDENYNRLGYFNQSYNEEFWNIINNFVSKYA 286 Query: 287 ------------GEPGYRGNLRELLANP-----------QIQRAFLLLDDTLELCYDVAK 323 GE L+E +A +I+ L ++ EL Sbjct: 287 DISDCKNTLIFDGERITSFGLKEDVAILGTLLDGYNQIIKIKNKINLFEENRELRKKELD 346 Query: 324 LSLGRSAL----LDAAFERATLYRTRLKRLKEINQ-----PGYSYW-------------- 360 + AL F+R ++ L I + + Sbjct: 347 FKIDNKALVPIEFQYIFDRRVSDMPLMEFLDSIKDLKTINSNFVIYKSGNSNNNNNNNNN 406 Query: 361 -------YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG 413 + + L P++V++ K L + I SATL +L + G Sbjct: 407 SNNNSNNNSGSRSNSNLLCEPVAVSNYLKNLY--NGATVIHCSATL---GNLKIHALKTG 461 Query: 414 IEQAESLLLPSPFDYSRQALLCVLR---NLPQTNQPGSARQLAAMLRPIIEANNGRCFML 470 + +++L L SPF R+ ++ + +N+ + + ++++ +L Sbjct: 462 MGSSQTLTLDSPFSEHRRKIIALRDGEEMKYDSNKEKKRNKANNNILKLLKSAKCNSLVL 521 Query: 471 CTSHAMMRDLAEQFRATM-----TLPVLLQGETSKG--QLLQQFVSAGNALLVATSSFWE 523 S + + + G K +L ++F G +L+AT F E Sbjct: 522 FKSFEDLNSCYAHLLNNNNLLNQKIYIYEAGMDGKEAKELKEKFERNG-GILLATGRFAE 580 Query: 524 GVDVRGDTLSLVIIDKLPFTSPDDPLLKA--------RMEDCRLRGGDPFDEVQLPDAVI 575 GVD+ + L++VIID LPF P + + + + F Sbjct: 581 GVDIPREALTMVIIDSLPFPVPTPLINREQKMIEDGLKRKKVNNANWTAFLMTSFHIMSR 640 Query: 576 TLKQGVGRLIRDADDRGVLVICDNRLV 602 T+ Q +GRLIR +D GV+VI D R Sbjct: 641 TIIQMIGRLIRTEEDYGVVVIQDKRFN 667 >UniRef50_UPI0001C41D99 Rad3-related DNA helicase n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41D99 Length = 1124 Score = 269 bits (687), Expect = 3e-70, Method: Composition-based stats. Identities = 141/612 (23%), Positives = 234/612 (38%), Gaps = 105/612 (17%) Query: 8 DGQLAKAIPGFKPREPQRQMAVAVTQAIEKG-QPLVVEAGTGTGKTYAYLAPALRAKKKV 66 D ++ P K R Q + + +AIEKG + +V+EAGTGTGK+ A A Sbjct: 20 DPKVRSYFPFAKARPQQLETISEIHEAIEKGYKYIVLEAGTGTGKS-AIAATLAMCYGDA 78 Query: 67 IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQI 126 I T +K LQ Q Y++D + AL+KGRSN+ CL+ +E+ D+ + Sbjct: 79 YILTMTKQLQRQ-YTKDF--------EDYDFALVKGRSNFDCLKYMEEAIEESCDMGRCV 129 Query: 127 LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARK 186 L + + L C C R Sbjct: 130 L-------------------EGHKCSYKVNQFNLYKKDPGEC----------CPYFHQRA 160 Query: 187 KAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQ 246 A+++D+V+ N+ A++ F ++I DEAH L + RQ Sbjct: 161 IALNSDIVITNYSYLFAEL-----NFNNDFKAKRLLICDEAHNLESKIMDLISLEFTRRQ 215 Query: 247 LLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQR 306 L D + + LKD L E GY L+ I+R Sbjct: 216 LKD--EVGINLSKETLKD---------------------LDEKGYTSWLQF------IKR 246 Query: 307 AFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ----PGYSYWYE 362 D + K +LG+ L R+ + RL+ K + ++ + Sbjct: 247 VCERYGDKSKET----KKALGKRKSL-TLHRRSENLKRRLEDFKRFSNYIAIDPDNWIMD 301 Query: 363 CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE--SL 420 L+ P+ + E++ + IF S T+ + LGIE+ E + Sbjct: 302 YDPHSQKLSFKPIRIDKYASEVLLKHADVCIFMSGTILNHHQF---AKWLGIEEDEIYPI 358 Query: 421 LLPSPFDYSRQALL-CVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCT-SHAMMR 478 SPFD R + ++ N SA++ ++R I+E +NG ++ T S+ Sbjct: 359 RRKSPFDIRRNPIRTYSGFDMTYRNLGSSAKRSVPVIREILERHNGEKGIIHTVSY---- 414 Query: 479 DLAEQFRATMTLPVLLQGET-SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 E + + P LL ET + ++L++F + L++ + S EGVD+ GD II Sbjct: 415 QCKEFLKKELNNPRLLDHETKDREKVLEKFKKSDEPLVLISPSMNEGVDLPGDLCRFQII 474 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 K+P+ + D + + R + + + Q I L Q GR +R DD Sbjct: 475 YKIPYPNISD-----KQTNIRRKKEKIWYDYQ---TAINLVQTYGRGMRSEDDYCTTYFI 526 Query: 598 DNRLVMRPYGAT 609 D+R+ + Y Sbjct: 527 DSRI--KSYLKR 536 >UniRef50_Q03PE1 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03PE1_LACBA Length = 788 Score = 268 bits (686), Expect = 4e-70, Method: Composition-based stats. Identities = 119/624 (19%), Positives = 218/624 (34%), Gaps = 49/624 (7%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P R QR++AVAV + I + L EA TGTGKT + L P ++A + +I Sbjct: 185 FPFDHYRPGQRELAVAVYKTIVTSKRLFAEAPTGTGKTISTLFPTIKAIGEGLI------ 238 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 Q Y + + + + +G +L+ L D + L Sbjct: 239 -QRIFYLTAKQSTRRVAEEAITLMASQG-------LKLKSITLTAKDKIK--FPEEADLA 288 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVV 194 N + G D + + ++ DV+ Sbjct: 289 PEDNPYMLGYYDRLKPALLD--LLEHHDQLTRPVIEQVARKHTLDPFEFQLDASLFCDVI 346 Query: 195 VVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI 254 + +++ D V F + + DEAH L + + ++SS L L Sbjct: 347 IGDYNYLF-DPQVHLQRFFATRDPDNFFLIDEAHNLVSRSRDMYSAAMSSHPLDHLITLS 405 Query: 255 TIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDT 314 + K ++LQ L + D L + G + + + L + Sbjct: 406 RDTDQATPKLRRRLQD----LRATFDDICAPLIDAGQTDS-TFMTPPENFEHDLGRLVEA 460 Query: 315 LELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTP 374 + + A+LD F +R+ + Y TL Sbjct: 461 VHDWLVDQPQTPFTQAILDYYF-----MAISYQRIADYYDDTYRMRLTIDDGQITLKQLC 515 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQAL 433 L + + +A + SATLS L ++ + LG + + + L SPF + QA+ Sbjct: 516 LDPSAFLADSLA-LGHGAVLFSATLS---PLDYYQTVLGGDQDSLAYQLRSPFKPTNQAI 571 Query: 434 LCV-LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT-LP 491 L + + + ++ +++ G + S++ + +++ F+ + Sbjct: 572 LVTNYIQTTYNKRDANLANILLAIKTLVDGKTGNYLIFLPSYSYLLTVSQAFQLAYPQIQ 631 Query: 492 VLLQG----ETSKGQLLQQFVSAGNALLVA----TSSFWEGVDVRGDTLSLVII--DKLP 541 + Q E + + L F + LV F EG+D++ D L V I LP Sbjct: 632 TVCQQAQMAEADRSRFLASFTANPTTTLVGFALLGGIFSEGIDLKADRLIGVCIVSVGLP 691 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 +P+ LL+ ++ +G F QLP + + Q GRLIR + D GV+++ D R Sbjct: 692 GINPETNLLRDYFDERSHQGF-AF-AYQLP-GLNNVFQAAGRLIRGSHDVGVILLMDQRF 748 Query: 602 VMRPYGATFLASLPPAPRTRDIAR 625 Y + + R + Sbjct: 749 ASPRYTQLYPSHWQHFQRLYRPEQ 772 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P44680 Probable ATP-dependent helicase HI0387 n=261 Tax... 650 0.0 UniRef50_C4LDA1 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=C4... 630 e-179 UniRef50_C5V4E9 Helicase c2 n=3 Tax=Betaproteobacteria RepID=C5V... 619 e-175 UniRef50_B5JSI7 Helicase c2 n=1 Tax=gamma proteobacterium HTCC50... 617 e-175 UniRef50_A1SX28 ATP-dependent helicase, DinG family protein n=8 ... 612 e-173 UniRef50_Q0VQH3 Probable ATP-dependent helicase n=2 Tax=Alcanivo... 609 e-172 UniRef50_C0N252 Putative uncharacterized protein n=1 Tax=Methylo... 600 e-170 UniRef50_C7RB18 Helicase c2 n=1 Tax=Kangiella koreensis DSM 1606... 600 e-170 UniRef50_A0L5B4 Helicase c2 n=1 Tax=Magnetococcus sp. MC-1 RepID... 596 e-168 UniRef50_B8GRE0 Helicase c2 n=6 Tax=Chromatiales RepID=B8GRE0_THISH 595 e-168 UniRef50_A6GN94 Helicase c2 n=1 Tax=Limnobacter sp. MED105 RepID... 594 e-168 UniRef50_D0KYH8 Helicase c2 n=1 Tax=Halothiobacillus neapolitanu... 593 e-168 UniRef50_Q1IHL6 Helicase c2 n=3 Tax=Acidobacteria RepID=Q1IHL6_A... 587 e-166 UniRef50_B2SXR3 Helicase c2 n=26 Tax=Burkholderiales RepID=B2SXR... 587 e-166 UniRef50_UPI0000E87EB6 Helicase c2:DEAD/DEAH box helicase, N-ter... 580 e-164 UniRef50_B5EML2 Helicase c2 n=2 Tax=Acidithiobacillus ferrooxida... 580 e-164 UniRef50_B2JIT4 Helicase c2 n=59 Tax=Betaproteobacteria RepID=B2... 577 e-163 UniRef50_A0LLQ3 Helicase c2 n=1 Tax=Syntrophobacter fumaroxidans... 571 e-161 UniRef50_Q31G59 Putative uncharacterized protein n=1 Tax=Thiomic... 570 e-161 UniRef50_A0KWC1 Helicase c2 n=22 Tax=Gammaproteobacteria RepID=A... 569 e-160 UniRef50_B4ST01 Helicase c2 n=23 Tax=Gammaproteobacteria RepID=B... 567 e-160 UniRef50_Q5ZU85 ATP dependent DNA helicase (DEAD box family) Rad... 563 e-159 UniRef50_B9ZQY0 Helicase c2 n=1 Tax=Thioalkalivibrio sp. K90mix ... 562 e-158 UniRef50_Q1CXN9 Putative ATP-dependent helicase n=1 Tax=Myxococc... 559 e-157 UniRef50_A9IIW5 Probable ATP-dependent helicase n=6 Tax=Proteoba... 557 e-157 UniRef50_Q1NJC5 Helicase c2 n=2 Tax=delta proteobacterium MLMS-1... 553 e-156 UniRef50_D0LRT5 Helicase c2 n=1 Tax=Haliangium ochraceum DSM 143... 551 e-155 UniRef50_C7I1U8 Helicase c2 n=1 Tax=Thiomonas intermedia K12 Rep... 551 e-155 UniRef50_Q6AMF2 Related to ATP-dependent helicase n=2 Tax=Proteo... 550 e-155 UniRef50_C6NRY2 DinG family ATP-dependent helicase YoaA n=1 Tax=... 550 e-155 UniRef50_C8N856 ATP-dependent helicase n=1 Tax=Cardiobacterium h... 549 e-155 UniRef50_C8R1Z3 Helicase c2 n=1 Tax=Desulfurivibrio alkaliphilus... 547 e-154 UniRef50_D1AJB0 Helicase c2 n=5 Tax=Fusobacteriaceae RepID=D1AJB... 533 e-150 UniRef50_A6C6H8 ATP-dependent helicase, DinG family protein n=1 ... 532 e-149 UniRef50_Q0F3T0 ATP-dependent helicase n=1 Tax=Mariprofundus fer... 530 e-149 UniRef50_A5EVG8 Helicase domain protein n=1 Tax=Dichelobacter no... 528 e-148 UniRef50_B2A1E9 Helicase c2 n=1 Tax=Natranaerobius thermophilus ... 527 e-148 UniRef50_C9YB00 Putative uncharacterized protein n=1 Tax=Curviba... 526 e-147 UniRef50_B1XY97 Helicase c2 n=2 Tax=Burkholderiales Genera incer... 525 e-147 UniRef50_C1ZB20 DNA helicase, Rad3 n=3 Tax=Planctomycetaceae Rep... 525 e-147 UniRef50_C3WBH3 ATP-dependent helicase DinG n=2 Tax=Fusobacteriu... 523 e-147 UniRef50_D1N0Q3 Helicase c2 n=1 Tax=Victivallis vadensis ATCC BA... 521 e-146 UniRef50_A9GFB8 ATP-dependent helicase n=2 Tax=Myxococcales RepI... 520 e-146 UniRef50_Q1PXS1 Similar to ATP-dependent DNA helicase (DNA-damag... 518 e-145 UniRef50_B8CW80 Helicase c2 n=1 Tax=Halothermothrix orenii H 168... 518 e-145 UniRef50_C8W6D5 Exonuclease RNase T and DNA polymerase III n=1 T... 516 e-144 UniRef50_B4D6W3 Helicase c2 n=2 Tax=Verrucomicrobia RepID=B4D6W3... 516 e-144 UniRef50_C6JKU1 ATP-dependent helicase n=2 Tax=Fusobacterium Rep... 515 e-144 UniRef50_B6BV17 Helicase c2 n=1 Tax=beta proteobacterium KB13 Re... 512 e-143 UniRef50_Q1K3T5 Helicase c2 n=1 Tax=Desulfuromonas acetoxidans D... 512 e-143 UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Ther... 511 e-143 UniRef50_Q39QU4 Helicase c2 n=11 Tax=Bacteria RepID=Q39QU4_GEOMG 509 e-142 UniRef50_A6DIX1 ATP-dependent helicase, DinG family protein n=1 ... 508 e-142 UniRef50_A5TWB3 ATP-dependent helicase n=14 Tax=Fusobacterium Re... 508 e-142 UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 506 e-141 UniRef50_D0LMW6 Helicase c2 n=3 Tax=Haliangium ochraceum DSM 143... 505 e-141 UniRef50_D0J804 Helicase c2 n=4 Tax=Comamonadaceae RepID=D0J804_... 505 e-141 UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1... 501 e-140 UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helic... 501 e-140 UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotom... 500 e-140 UniRef50_A7HIV0 Helicase c2 n=4 Tax=Anaeromyxobacter RepID=A7HIV... 500 e-140 UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chlo... 499 e-139 UniRef50_A1W6Z0 Helicase c2 n=5 Tax=Comamonadaceae RepID=A1W6Z0_... 499 e-139 UniRef50_B3DY63 Rad3-related DNA helicase n=1 Tax=Methylacidiphi... 499 e-139 UniRef50_D2QZI1 Helicase c2 n=2 Tax=Planctomycetaceae RepID=D2QZ... 498 e-139 UniRef50_Q6MEU9 Putative ATP-dependent DNA helicase dinG n=2 Tax... 498 e-139 UniRef50_B9XI74 Helicase c2 n=1 Tax=bacterium Ellin514 RepID=B9X... 498 e-139 UniRef50_B2URD7 Helicase c2 n=1 Tax=Akkermansia muciniphila ATCC... 496 e-139 UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bact... 494 e-138 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 494 e-138 UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-rel... 489 e-136 UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase... 489 e-136 UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4... 488 e-136 UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2... 488 e-136 UniRef50_Q7NN01 Gll0614 protein n=1 Tax=Gloeobacter violaceus Re... 487 e-136 UniRef50_C1A7T8 Putative ATP-dependent DNA helicase n=1 Tax=Gemm... 485 e-135 UniRef50_A9BWB5 Helicase c2 n=2 Tax=Comamonadaceae RepID=A9BWB5_... 480 e-134 UniRef50_Q73L75 ATP-dependent helicase, DinG family n=3 Tax=Trep... 478 e-133 UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 T... 478 e-133 UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI... 478 e-133 UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:Dna... 474 e-132 UniRef50_C5VAL7 ATP-dependent helicase n=14 Tax=Corynebacterinea... 474 e-132 UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class... 473 e-132 UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep... 473 e-132 UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus... 472 e-131 UniRef50_D0MD62 Helicase c2 n=1 Tax=Rhodothermus marinus DSM 425... 469 e-130 UniRef50_C0QZ08 Helicase n=2 Tax=Brachyspira RepID=C0QZ08_BRAHW 466 e-129 UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri... 463 e-129 UniRef50_A0YCJ4 Helicase c2 n=1 Tax=marine gamma proteobacterium... 463 e-129 UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca... 462 e-128 UniRef50_B1ZV97 Helicase c2 n=2 Tax=Opitutaceae RepID=B1ZV97_OPITP 461 e-128 UniRef50_A8LYP2 Helicase c2 n=13 Tax=Actinomycetales RepID=A8LYP... 457 e-127 UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1... 457 e-127 UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R... 455 e-126 UniRef50_C0W0F4 ATP-dependent DNA helicase n=1 Tax=Actinomyces c... 455 e-126 UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2... 455 e-126 UniRef50_B0S8U2 DNA helicase n=6 Tax=Leptospira RepID=B0S8U2_LEPBA 455 e-126 UniRef50_D1AXI2 Helicase c2 n=1 Tax=Streptobacillus moniliformis... 455 e-126 UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7... 454 e-126 UniRef50_C7QD23 Helicase c2 n=3 Tax=Actinomycetales RepID=C7QD23... 452 e-125 UniRef50_D0L9M3 Helicase c2 n=6 Tax=Actinomycetales RepID=D0L9M3... 452 e-125 UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1... 451 e-125 UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, pu... 450 e-125 UniRef50_C7NJ65 DNA helicase, Rad3 n=28 Tax=Actinomycetales RepI... 448 e-124 UniRef50_P29741 Probable ATP-dependent helicase dinG homolog n=5... 448 e-124 UniRef50_C2BW38 ATP-dependent helicase DinG n=3 Tax=Mobiluncus R... 444 e-123 UniRef50_Q0AXW2 Putative uncharacterized protein n=1 Tax=Syntrop... 444 e-123 UniRef50_A7BD43 Putative uncharacterized protein n=1 Tax=Actinom... 443 e-123 UniRef50_D1SEM0 Helicase c2 n=2 Tax=Micromonospora RepID=D1SEM0_... 443 e-122 UniRef50_B8CRB2 Helicase c2 n=45 Tax=Gammaproteobacteria RepID=B... 443 e-122 UniRef50_B2S179 ATP-dependent helicase, DinG family n=4 Tax=Borr... 441 e-122 UniRef50_P64315 Probable ATP-dependent helicase dinG homolog n=1... 440 e-122 UniRef50_D1YCN3 ATP-dependent helicase DinG n=3 Tax=Propionibact... 438 e-121 UniRef50_D1C098 Helicase c2 n=10 Tax=Actinomycetales RepID=D1C09... 435 e-120 UniRef50_B4RPD7 DinG n=35 Tax=Proteobacteria RepID=B4RPD7_NEIG2 434 e-120 UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependen... 434 e-120 UniRef50_C1MEF3 DNA helicase n=1 Tax=Citrobacter sp. 30_2 RepID=... 431 e-119 UniRef50_A4A9L6 ATP-dependent helicase, DinG n=4 Tax=unclassifie... 429 e-118 UniRef50_Q1MXU1 ATP-dependent helicase DinG n=1 Tax=Bermanella m... 429 e-118 UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atop... 428 e-118 UniRef50_A3EQ06 Probable ATP-dependent DNA helicase n=2 Tax=Lept... 427 e-118 UniRef50_C5BWL9 Helicase c2 n=14 Tax=Actinomycetales RepID=C5BWL... 426 e-117 UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collins... 426 e-117 UniRef50_Q47MW9 Helicase c2:DEAD/DEAH box helicase, N-terminal n... 425 e-117 UniRef50_Q482M5 ATP-dependent helicase DinG n=3 Tax=Gammaproteob... 423 e-117 UniRef50_A6VX61 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=A6... 421 e-116 UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 421 e-116 UniRef50_C5CG21 Helicase c2 n=1 Tax=Kosmotoga olearia TBF 19.5.1... 421 e-116 UniRef50_C1TS05 DNA helicase, Rad3 n=1 Tax=Dethiosulfovibrio pep... 419 e-115 UniRef50_Q2SIT1 Rad3-related DNA helicase n=1 Tax=Hahella chejue... 419 e-115 UniRef50_Q8L2A4 DNA helicase n=1 Tax=Proteus vulgaris RepID=Q8L2... 419 e-115 UniRef50_A1U100 Helicase c2 n=3 Tax=Marinobacter RepID=A1U100_MARAV 418 e-115 UniRef50_Q21I38 Helicase c2 n=16 Tax=Gammaproteobacteria RepID=Q... 418 e-115 UniRef50_C0N9A8 Putative uncharacterized protein n=1 Tax=Methylo... 417 e-115 UniRef50_Q2BMS2 Helicase, putative n=1 Tax=Neptuniibacter caesar... 416 e-114 UniRef50_Q0A9Y9 Helicase c2 n=2 Tax=Gammaproteobacteria RepID=Q0... 415 e-114 UniRef50_A1VJJ6 Helicase c2 n=2 Tax=Polaromonas naphthalenivoran... 414 e-114 UniRef50_B2SSY1 ATP-dependent helicase n=13 Tax=Xanthomonadaceae... 413 e-113 UniRef50_A1WTY2 Helicase c2 n=1 Tax=Halorhodospira halophila SL1... 412 e-113 UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collins... 412 e-113 UniRef50_Q1QX31 Helicase c2 n=9 Tax=Gammaproteobacteria RepID=Q1... 411 e-113 UniRef50_C9M767 Putative ATP-dependent helicase n=1 Tax=Jonquete... 410 e-113 UniRef50_A4BE15 ATP-dependent helicase, DinG family protein n=1 ... 410 e-113 UniRef50_Q1YS96 ATP-dependent helicase DinG n=1 Tax=gamma proteo... 406 e-111 UniRef50_A5CX48 ATP-dependent DNA helicase DinG n=3 Tax=Gammapro... 405 e-111 UniRef50_D1Y8P3 DNA polymerase III, epsilon subunit n=1 Tax=Pyra... 405 e-111 UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA poly... 402 e-110 UniRef50_C1SGW8 DNA helicase, Rad3 n=1 Tax=Denitrovibrio acetiph... 399 e-109 UniRef50_Q1EM22 ATP-dependent helicase DinG n=1 Tax=uncultured T... 398 e-109 UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Egge... 394 e-108 UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit... 394 e-108 UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ... 393 e-107 UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Sla... 386 e-105 UniRef50_C8RVT0 ATP-dependent helicase DinG (Fragment) n=2 Tax=C... 385 e-105 UniRef50_A1WDD4 Helicase c2 n=11 Tax=Comamonadaceae RepID=A1WDD4... 385 e-105 UniRef50_B8I7B6 DEAD_2 domain protein n=3 Tax=Clostridium RepID=... 383 e-104 UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D09... 381 e-104 UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit ... 380 e-103 UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atop... 378 e-103 UniRef50_A6BD56 Putative uncharacterized protein n=7 Tax=Clostri... 371 e-101 UniRef50_UPI0001C37E7F helicase c2 n=1 Tax=Ruminococcus flavefac... 369 e-100 UniRef50_P27296 Probable ATP-dependent helicase dinG n=174 Tax=E... 369 e-100 UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit ... 367 e-100 UniRef50_A0LUZ2 Helicase c2 n=1 Tax=Acidothermus cellulolyticus ... 367 e-100 UniRef50_A8MJA6 DEAD_2 domain protein n=11 Tax=Clostridia RepID=... 361 4e-98 UniRef50_Q8XL45 Probable helicase protein n=7 Tax=Clostridium pe... 361 6e-98 UniRef50_C0FSD6 Putative uncharacterized protein n=2 Tax=Rosebur... 360 1e-97 UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, pu... 360 1e-97 UniRef50_C9B220 DEAD_2 helicase n=4 Tax=Enterococcus RepID=C9B22... 360 1e-97 UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit ... 359 2e-97 UniRef50_A1WP29 Helicase c2 n=2 Tax=cellular organisms RepID=A1W... 358 3e-97 UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lact... 357 6e-97 UniRef50_A8REN5 Putative uncharacterized protein n=1 Tax=Eubacte... 357 8e-97 UniRef50_A6NXQ7 Putative uncharacterized protein n=2 Tax=Bacteri... 356 2e-96 UniRef50_Q67KS2 ATP-dependent helicase n=1 Tax=Symbiobacterium t... 355 2e-96 UniRef50_B3S2Q7 Putative uncharacterized protein n=1 Tax=Trichop... 355 4e-96 UniRef50_C0X4L0 DNA-directed DNA polymerase III epsilon subunit ... 354 5e-96 UniRef50_UPI0001C355EC helicase c2 n=1 Tax=Clostridium hathewayi... 354 7e-96 UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus ... 353 2e-95 UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax... 352 2e-95 UniRef50_B8FYP7 DEAD_2 domain protein n=2 Tax=Desulfitobacterium... 352 3e-95 UniRef50_A7GAR7 Putative ATP-dependent helicase n=11 Tax=Clostri... 352 3e-95 UniRef50_A6TUM0 Helicase c2 n=3 Tax=Clostridiales RepID=A6TUM0_A... 350 1e-94 UniRef50_C7RHR2 DEAD_2 domain protein n=4 Tax=Anaerococcus RepID... 350 1e-94 UniRef50_B0G3G8 Putative uncharacterized protein n=16 Tax=Bacter... 350 1e-94 UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_... 348 3e-94 UniRef50_Q73F47 ATP-dependent helicase, DinG family, putative n=... 347 7e-94 UniRef50_C6D1G2 DEAD_2 domain protein n=5 Tax=Bacillales RepID=C... 347 1e-93 UniRef50_C0ESD4 Putative uncharacterized protein n=1 Tax=Eubacte... 344 6e-93 UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit ... 343 1e-92 UniRef50_B0S2X2 ATP dependent helicase n=2 Tax=Finegoldia magna ... 343 1e-92 UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit... 343 1e-92 UniRef50_C4HUU2 DinG family ATP-dependent helicase YoaA n=2 Tax=... 341 5e-92 UniRef50_A6M309 DEAD_2 domain protein n=4 Tax=Clostridium RepID=... 340 9e-92 UniRef50_D0N844 Putative uncharacterized protein n=1 Tax=Phytoph... 340 1e-91 UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1... 340 1e-91 UniRef50_B6FUD5 Putative uncharacterized protein n=1 Tax=Clostri... 340 1e-91 UniRef50_B9GEL6 Predicted protein (Fragment) n=2 Tax=rosids RepI... 339 2e-91 UniRef50_A7VIR7 Putative uncharacterized protein n=3 Tax=Clostri... 339 2e-91 UniRef50_C4GAH1 Putative uncharacterized protein n=1 Tax=Shuttle... 338 3e-91 UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=1... 338 5e-91 UniRef50_A0YBF9 Putative uncharacterized protein n=1 Tax=marine ... 337 7e-91 UniRef50_Q0VGM9 Regulator of telomere elongation helicase 1 n=22... 337 8e-91 UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus Re... 337 1e-90 UniRef50_B9SQD1 Regulator of telomere elongation helicase 1 rtel... 336 1e-90 UniRef50_B8BYI1 Predicted protein (Fragment) n=1 Tax=Thalassiosi... 336 1e-90 UniRef50_C4Z491 Putative uncharacterized protein n=1 Tax=Eubacte... 336 2e-90 UniRef50_C7H4L4 Putative helicase n=1 Tax=Faecalibacterium praus... 335 3e-90 UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=5... 334 5e-90 UniRef50_A1AQ39 DEAD_2 domain protein n=7 Tax=Desulfuromonadales... 333 9e-90 UniRef50_B8DGR4 Helicase c2 domain protein n=17 Tax=Listeria Rep... 333 1e-89 UniRef50_Q64EP0 Putative uncharacterized protein n=2 Tax=environ... 333 1e-89 UniRef50_A9CS00 DNA repair helicase n=1 Tax=Enterocytozoon biene... 332 3e-89 UniRef50_D1PL53 Putative helicase n=1 Tax=Subdoligranulum variab... 331 5e-89 UniRef50_A7SA32 Predicted protein n=3 Tax=Eumetazoa RepID=A7SA32... 331 7e-89 UniRef50_UPI0000D55CB6 PREDICTED: similar to fanconi anemia grou... 330 9e-89 UniRef50_UPI00015B5E86 PREDICTED: similar to regulator of telome... 329 2e-88 UniRef50_Q9NZ71 Regulator of telomere elongation helicase 1 n=42... 329 2e-88 UniRef50_A9KRY0 DEAD_2 domain protein n=2 Tax=Clostridiales RepI... 326 2e-87 UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactoba... 326 2e-87 UniRef50_Q2LUZ3 ATP-dependent helicase, dinG family n=1 Tax=Synt... 325 3e-87 UniRef50_UPI00017937E6 PREDICTED: similar to regulator of telome... 325 4e-87 UniRef50_B3W8P1 Superfamily II DNA and RNA helicase n=11 Tax=Lac... 325 4e-87 UniRef50_Q7QEI1 Regulator of telomere elongation helicase 1 homo... 325 5e-87 UniRef50_Q03DH3 Rad3-related DNA helicase n=2 Tax=Pediococcus Re... 324 5e-87 UniRef50_UPI0000DB6B80 PREDICTED: similar to CG4078-PA n=1 Tax=A... 324 8e-87 UniRef50_C5EU12 DEAD_2 domain-containing protein n=7 Tax=Firmicu... 322 3e-86 UniRef50_C0D1I1 Putative uncharacterized protein n=1 Tax=Clostri... 322 3e-86 UniRef50_A4S0W9 Predicted protein n=2 Tax=Ostreococcus RepID=A4S... 322 4e-86 UniRef50_UPI000180C89E PREDICTED: similar to BRIP1 n=1 Tax=Ciona... 321 5e-86 UniRef50_A8SGA1 Putative uncharacterized protein n=1 Tax=Faecali... 320 7e-86 UniRef50_B9XAU8 DEAD_2 domain protein n=3 Tax=Bacteria RepID=B9X... 320 8e-86 UniRef50_B7FQG3 Predicted protein (Fragment) n=1 Tax=Phaeodactyl... 320 1e-85 UniRef50_Q8SSE9 ATP-DEPENDENT DNA-BINDING HELICASE (RAD3/XPD sub... 319 2e-85 UniRef50_B6YWR5 ERCC2/XPD/Rad3-related DNA repair helicase n=5 T... 318 3e-85 UniRef50_UPI000180BD56 PREDICTED: similar to predicted protein n... 317 8e-85 UniRef50_Q57ZK3 Helicase, putative n=2 Tax=Trypanosoma brucei Re... 316 2e-84 UniRef50_C4V9F4 Putative uncharacterized protein n=1 Tax=Nosema ... 315 3e-84 UniRef50_A4VLC1 Rad3-related DNA helicase n=91 Tax=cellular orga... 315 4e-84 UniRef50_Q03PE1 Rad3-related DNA helicase n=4 Tax=Lactobacillus ... 314 5e-84 UniRef50_D1VTJ3 DEAD family protein n=1 Tax=Peptoniphilus lacrim... 313 2e-83 UniRef50_P50831 Probable ATP-dependent helicase ypvA n=105 Tax=B... 312 2e-83 UniRef50_Q4FXD6 Helicase, putative n=5 Tax=Trypanosomatidae RepI... 312 2e-83 UniRef50_A2E1B9 Helicase, putative n=1 Tax=Trichomonas vaginalis... 311 5e-83 UniRef50_D1ISD7 Whole genome shotgun sequence of line PN40024, s... 311 5e-83 UniRef50_B5IHH7 DEAD_2 domain protein n=2 Tax=Aciduliprofundum b... 310 9e-83 UniRef50_Q1WV23 Superfamily II DNA and RNA helicase n=3 Tax=Lact... 310 1e-82 UniRef50_B7AB83 ATP-dependent DNA helicase, RecQ family n=3 Tax=... 309 3e-82 UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus... 308 4e-82 UniRef50_Q58352 Probable ATP-dependent helicase MJ0942 n=10 Tax=... 308 4e-82 Sequences not found previously or not previously below threshold: >UniRef50_P44680 Probable ATP-dependent helicase HI0387 n=261 Tax=Gammaproteobacteria RepID=Y387_HAEIN Length = 640 Score = 650 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 383/634 (60%), Positives = 474/634 (74%), Gaps = 1/634 (0%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + F+ +G+L++ I GF+PR Q +MA AV +AI+ LV+EAGTGTGKT+AYLAPAL Sbjct: 7 IANIFSLNGELSQNIKGFRPRAEQLEMAYAVGKAIQNKSSLVIEAGTGTGKTFAYLAPAL 66 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 KK IISTGSK LQDQL++RDLP + KAL +TG +ALLKGR+NYLCLERL+Q G Sbjct: 67 VFGKKTIISTGSKNLQDQLFNRDLPAIKKALNFTGKIALLKGRANYLCLERLDQVIAQGV 126 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 +L+++ +R W+N T GD + C+ +AEDS P +TST ++CLG+DCP Y +C+ Sbjct: 127 LGDKSVLAELSKVRKWNNSTKTGDFTECIELAEDSPIIPQLTSTAESCLGTDCPNYSECY 186 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 V ARKKA++AD+VVVNHHLF ADM VKESGFGELIP A+V+IFDEAHQLPDIASQYFGQ Sbjct: 187 VASARKKALNADLVVVNHHLFFADMAVKESGFGELIPNAEVIIFDEAHQLPDIASQYFGQ 246 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE-PGYRGNLRELL 299 SL+SRQL DL KDI I YRTELKD QQL +D L + QDFRL LG RGN REL Sbjct: 247 SLTSRQLFDLCKDINIVYRTELKDMQQLGTTSDTLLKVVQDFRLLLGNGSNVRGNWRELY 306 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359 +++AF LL + ++ +V KL+LGRS LD+ FER + +LKRL E N GY Y Sbjct: 307 TQSAVKKAFELLQEKIDFLSEVIKLALGRSQTLDSIFERVESIKIQLKRLSETNIVGYCY 366 Query: 360 WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES 419 WYE R F L +TPL+VADKF + K +WIFTSATL V +HF RLGIE A Sbjct: 367 WYEGNGRQFGLHITPLTVADKFGAQLEAKEAAWIFTSATLEVGGTFNHFCQRLGIENATQ 426 Query: 420 LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 +L SPF+Y Q+LLCV R LP TNQ + L +L P+IEAN GRCF+LCTS++MMR Sbjct: 427 KILYSPFNYPEQSLLCVPRYLPNTNQMNTLNSLGEILLPVIEANKGRCFVLCTSYSMMRG 486 Query: 480 LAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDK 539 LAE FR L +LLQGETSKG+LL+QF+ +++LVATSSFWEGVDVRGD LSLVIIDK Sbjct: 487 LAEYFREKSHLSILLQGETSKGKLLEQFIKETHSVLVATSSFWEGVDVRGDALSLVIIDK 546 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LPFT+PD+PLLKAR+EDCRL+GGDPF+++Q+P+AVITLKQGVGRLIRD DRGV++ICDN Sbjct: 547 LPFTAPDEPLLKARIEDCRLQGGDPFNDIQIPEAVITLKQGVGRLIRDVTDRGVVIICDN 606 Query: 600 RLVMRPYGATFLASLPPAPRTRDIARAVRFLAIP 633 RLVMR YG TFL SLP + RTRD+ + ++FL Sbjct: 607 RLVMRNYGETFLKSLPNSSRTRDLNKVIQFLQNK 640 >UniRef50_C4LDA1 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=C4LDA1_TOLAT Length = 672 Score = 630 bits (1625), Expect = e-179, Method: Composition-based stats. Identities = 363/633 (57%), Positives = 459/633 (72%) Query: 3 DDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA 62 D FA +G LAKAIPGF PR+ Q MA AV++AIE L+VEAGTGTGKT+AYL PAL + Sbjct: 19 DYFAENGLLAKAIPGFAPRQAQVHMAEAVSKAIETAGRLLVEAGTGTGKTFAYLVPALDS 78 Query: 63 KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL 122 K+VIISTGSKALQDQLY RDLPT+ A++Y VA LKGRSNYLC RL L Sbjct: 79 GKRVIISTGSKALQDQLYERDLPTLLLAMQYGKPVAQLKGRSNYLCTYRLALLEQEMHFL 138 Query: 123 PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVV 182 + +D+ +R + +TV GD++ + E + P VTSTNDNCLG +CP Y++CF+V Sbjct: 139 AADVFADLPKVRQFKARTVSGDVADIPGLQEQAPILPFVTSTNDNCLGRECPDYENCFLV 198 Query: 183 KARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 KAR+KA+DA VVV+NHHLF ADM VK++GFGEL+P+ADV IFDEAHQLPDIASQYFG+SL Sbjct: 199 KARRKALDAQVVVINHHLFFADMSVKDTGFGELLPDADVYIFDEAHQLPDIASQYFGESL 258 Query: 243 SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANP 302 SSRQL D+A ++ +AYR E KD QL K ADRL Q Q RL G RGNLR++L P Sbjct: 259 SSRQLSDVADELRLAYRLEAKDMAQLGKAADRLVQDCQAMRLAFGVDPSRGNLRDVLVQP 318 Query: 303 QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYE 362 Q+QR L ++++ CYDV KL+LGR ++ FER + T + + I + G +YWYE Sbjct: 319 QMQRELQRLKESIKFCYDVCKLALGRGEQINNCFERLAGFLTTVDHVTAITEAGAAYWYE 378 Query: 363 CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLL 422 T RHFTL +TPLS+A++F + + + SWIFTSATL+V ++ +F+ R+G+ A++ LL Sbjct: 379 TTKRHFTLNVTPLSIAERFAQEVMRVGCSWIFTSATLTVGEEFDYFSQRMGVGDADTCLL 438 Query: 423 PSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 SPFDY+ Q+LLCV RNLP T+ A QLA L P+IE G CF LCTS+ + +A+ Sbjct: 439 DSPFDYAHQSLLCVPRNLPDTSIYQRATQLAERLLPVIEQVPGGCFFLCTSYNSVNQIAQ 498 Query: 483 QFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPF 542 R + VL+QG+ +K ++L FV+ G+A+LVATSSFWEGVDVRG LS VIIDKLPF Sbjct: 499 VLRDKLDRTVLVQGDDNKQRILADFVADGHAVLVATSSFWEGVDVRGAALSCVIIDKLPF 558 Query: 543 TSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 TSPD+PLLKARMEDCR++GGDPF ++QLP+AVI LKQGVGRLIRD DRG+L++CD RLV Sbjct: 559 TSPDEPLLKARMEDCRMQGGDPFQQLQLPEAVIVLKQGVGRLIRDYQDRGILILCDPRLV 618 Query: 603 MRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 +PYGA FL SLPP PR RDI R F +P S Sbjct: 619 NKPYGAAFLKSLPPIPRCRDITRLTEFWKLPVS 651 >UniRef50_C5V4E9 Helicase c2 n=3 Tax=Betaproteobacteria RepID=C5V4E9_9PROT Length = 648 Score = 619 bits (1596), Expect = e-175, Method: Composition-based stats. Identities = 286/640 (44%), Positives = 382/640 (59%), Gaps = 6/640 (0%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + F+ LA + F+PRE QR+MA+AV AI+ LV EAGTGTGKT+AYL PAL Sbjct: 5 VARFFSEQSPLATEVSSFRPREQQREMALAVADAIKNNAILVAEAGTGTGKTFAYLVPAL 64 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 KVIISTG+K LQDQL+ +DLP V ALK ++ALLKGR+NY+C LE+ A G Sbjct: 65 LGGGKVIISTGTKNLQDQLFQKDLPMVRDALKAPVSIALLKGRANYICHYHLERTAHDGR 124 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + + + ++ ++ T GD S V E++ W VTST DNCLG +CP +K+CF Sbjct: 125 FATREDIKHLGKIKKYAKITSTGDKSGVADVPENAPIWLQVTSTRDNCLGQECPNHKECF 184 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 V+ AR +AM AD+VVVNHHLF AD+++K+ G EL+P + +IFDEAHQLP+ AS +FG+ Sbjct: 185 VLHARTEAMKADIVVVNHHLFFADVMLKDDGVAELLPACNTVIFDEAHQLPETASLFFGE 244 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 +LS+ QLLDLA+D I T KD L K D L ++A+D RL + G R + Sbjct: 245 NLSTTQLLDLAQDSRIEALTSAKDFAPLPKACDELDKAARDLRLVFKKEG-RMPAIATGS 303 Query: 301 NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 L + L+ D+ + RS L+ ++RA + LK ++ W Sbjct: 304 FKDFAPQLKNLSEKLKQINDMLESQAARSEGLENCWQRAQAFSLLLKNWQDDKADDKVRW 363 Query: 361 YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL 420 E L TPLS+A+ F++ + +WIFTSATL+V D H+ +G+ +A++ Sbjct: 364 LEVYHHSLQLNATPLSIAEIFEKQIGSTARAWIFTSATLAVKQDFSHYQGEMGLLKAKTA 423 Query: 421 LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL 480 SPFDY +QALL V LP+ N G + P+IEA+ GR F+L TS M+ Sbjct: 424 CWDSPFDYEKQALLYVPSGLPEPNSEGYTEAVIQAALPMIEASRGRAFLLFTSLRAMQRA 483 Query: 481 AEQFRATMT-----LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 E A P+LLQGE S+ +LL +F GNA+L+ + SFWEGVDVRG+ LSLV Sbjct: 484 HEILTAEFDLRGWSYPLLLQGEGSRNELLGRFREHGNAVLLGSQSFWEGVDVRGEALSLV 543 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 IIDKLPF PDDP+L AR+ +G + F E QLP +ITLKQG GRLIRD +DRGVL+ Sbjct: 544 IIDKLPFAPPDDPVLAARIAQISKQGRNAFMEYQLPRTIITLKQGAGRLIRDENDRGVLM 603 Query: 596 ICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 ICD RL+ + YG SLPP RTR AV F S Sbjct: 604 ICDPRLITKQYGKRIWQSLPPMKRTRVETEAVAFFTAQSE 643 >UniRef50_B5JSI7 Helicase c2 n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JSI7_9GAMM Length = 631 Score = 617 bits (1590), Expect = e-175, Method: Composition-based stats. Identities = 291/630 (46%), Positives = 400/630 (63%), Gaps = 3/630 (0%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 +D +G LAK I G+ PR+ Q+QMA AV +AIE LVVEAGTG GKTYAYL PA+ Sbjct: 4 SDLLGAEGPLAKVIEGYAPRDAQQQMAEAVEKAIEDIDVLVVEAGTGVGKTYAYLIPAIL 63 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 + +KVIISTG++ LQDQLY RDLP + K L ALLKGRSNYLCL R+ + D Sbjct: 64 SGQKVIISTGTRTLQDQLYHRDLPMLLKTLGVPLKRALLKGRSNYLCLHRMGIADVHHRD 123 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 + + ++ WS +T+ GD++ + E++ P VTST DNCLG DC Y DC V Sbjct: 124 --REQSEQLAEIKRWSRETIHGDMAEVTLLPENAPILPKVTSTADNCLGVDCEFYNDCHV 181 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS 241 VKAR++A +AD+VVVNHHLF+ADM +K+ GFGE++P A+ IFDEAHQLP++AS +FGQ+ Sbjct: 182 VKARREAQEADLVVVNHHLFMADMALKQDGFGEVLPTANAFIFDEAHQLPEVASLFFGQA 241 Query: 242 LSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLAN 301 + SRQLL+ KDI Y TE+ + L + RL S +DFRL LG R + LL+ Sbjct: 242 VGSRQLLEFVKDIRAVYHTEISEADSLIDLSSRLEMSVRDFRLSLGAKEQRQAWQPLLSQ 301 Query: 302 PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 ++ F L + + ++ +R T + RL + Y YW Sbjct: 302 ADVRHRFADLAAAMSTLRAELVEWEEQGPGVENLLKRCTEFEQRLTLFDHL-DEDYIYWL 360 Query: 362 ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL 421 E T F L +TPLSVA F+ M++ SW+FTSATL+V + HHFT LG+ + +L Sbjct: 361 ETTRLGFVLNMTPLSVAKTFRAHMSRYEASWVFTSATLAVGEQFHHFTQSLGLWEPRTLR 420 Query: 422 LPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 L SPFDY+ +++C+ NLP+ + + +PI++A+ GR FML TS+ + A Sbjct: 421 LESPFDYANNSIICLPENLPEPSAFHFTDAVVDAAKPILQASRGRAFMLFTSYRALNHAA 480 Query: 482 EQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLP 541 E+ ++ + P+ +QGE + QLL F +G+ +L+ TSSFWEGVD++G+ LS VIIDKLP Sbjct: 481 ERLKSEVAFPLFVQGEAPRTQLLDDFRESGDGVLLGTSSFWEGVDIKGEALSCVIIDKLP 540 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 F +P+DP+L+ARM+ + +G +PF + QLP+AVI LKQGVGRLIRD DRGV+VICD RL Sbjct: 541 FAAPNDPVLQARMDAMKEQGQNPFMDYQLPNAVIALKQGVGRLIRDVHDRGVVVICDVRL 600 Query: 602 VMRPYGATFLASLPPAPRTRDIARAVRFLA 631 + YG F SLPP RTR ++ +F A Sbjct: 601 KTKFYGKRFTNSLPPMKRTRKLSDIQQFFA 630 >UniRef50_A1SX28 ATP-dependent helicase, DinG family protein n=8 Tax=Gammaproteobacteria RepID=A1SX28_PSYIN Length = 662 Score = 612 bits (1577), Expect = e-173, Method: Composition-based stats. Identities = 353/637 (55%), Positives = 447/637 (70%), Gaps = 5/637 (0%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 ++ F+ G L+K +P F R+ Q +MA AVTQAI K Q LVVEA TGTGKT+AYLAPAL Sbjct: 24 ISSFFSASGALSKQLPFFISRDAQIEMADAVTQAITKKQNLVVEAETGTGKTFAYLAPAL 83 Query: 61 RAKKK-----VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQ 115 K +IISTGSKALQ+QL+ +DLP + A +TG+V +LKGRSNYLC ERL + Sbjct: 84 LTFDKASSEKIIISTGSKALQEQLFLKDLPLLMAATNFTGSVTVLKGRSNYLCNERLARF 143 Query: 116 ALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 L + ++I +++WS + GD++ +AED+ P +TS NDNCLG +CP Sbjct: 144 MLETKQREKALQIELIKIKNWSLTSKTGDLAEIKDLAEDALIIPSITSNNDNCLGRECPS 203 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIAS 235 + DCF+VKARKKAMD+D+VV+NHHLF AD+ VKE+GFGELIPEA V IFDEAHQLPDIAS Sbjct: 204 FDDCFIVKARKKAMDSDLVVINHHLFFADLAVKETGFGELIPEAGVYIFDEAHQLPDIAS 263 Query: 236 QYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNL 295 YFG+SLSSRQL++LAK+I YRTEL++ +Q+ K AD+L SA DFR+ G+ Sbjct: 264 LYFGESLSSRQLIELAKEIEFVYRTELREAKQMSKAADQLRLSALDFRMAFAIDKGTGSW 323 Query: 296 RELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQP 355 R+ +Q + ++ +V LG+S +LD FER T + K+L +N+ Sbjct: 324 RDKSKERVMQLHVDRILQVMDFLKEVILERLGKSDVLDHCFERLTQFTLLFKKLNSVNES 383 Query: 356 GYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE 415 G+SYW+ECT +HF+L +TPLSVA +F+ +K SWIFTSATLSV HFT LG++ Sbjct: 384 GFSYWFECTKQHFSLNITPLSVAQRFQAECEKKQASWIFTSATLSVKGKFDHFTELLGLQ 443 Query: 416 QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 +++ L L SPFDY++Q+L V R LP+ PG A +L L P+I A+ GRCF LCTSHA Sbjct: 444 ESQCLQLASPFDYAKQSLFVVPRLLPEPGTPGLADKLVEQLAPVIRASKGRCFFLCTSHA 503 Query: 476 MMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 MM LA FR T+T PVLLQGE SK LL +F++ GNALLVATSSFWEGVDVRG LS V Sbjct: 504 MMNQLAAGFRQTLTFPVLLQGEKSKQALLDEFINHGNALLVATSSFWEGVDVRGQVLSCV 563 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 IIDK+PFTSP++PLLKARMED +L+G DPF EVQLP AVIT KQGVGRLIR D+GVL+ Sbjct: 564 IIDKIPFTSPEEPLLKARMEDAQLKGKDPFAEVQLPQAVITFKQGVGRLIRAEKDKGVLI 623 Query: 596 ICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAI 632 +CD RLV R YG FL SLP PRTR + A+ FL Sbjct: 624 VCDTRLVTRKYGNLFLNSLPCMPRTRSLDNAIDFLKT 660 >UniRef50_Q0VQH3 Probable ATP-dependent helicase n=2 Tax=Alcanivorax RepID=Q0VQH3_ALCBS Length = 668 Score = 609 bits (1570), Expect = e-172, Method: Composition-based stats. Identities = 276/628 (43%), Positives = 371/628 (59%), Gaps = 1/628 (0%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIIS 69 + A +PG++PREPQ +MA AV I G L+VEA TGTGKT AYL PAL ++ ++S Sbjct: 32 RFAPLLPGYQPREPQLEMADAVEDVIGSGATLLVEAETGTGKTLAYLVPALLSEGPTLVS 91 Query: 70 TGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSD 129 TG+K+LQDQL+ +DLP V KAL VALLKGR+NYLC RLE L + + Sbjct: 92 TGTKSLQDQLFFKDLPMVKKALNLPRKVALLKGRANYLCPYRLELHQEDARFLTRETVGQ 151 Query: 130 VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAM 189 + ++ W+ +T GDI+ + ED+ WP VTST DNCLG++CP Y +C ++KARK+A Sbjct: 152 MQIVSHWAARTRTGDIAELQQIPEDAPVWPWVTSTADNCLGTECPRYNECPLMKARKEAQ 211 Query: 190 DADVVVVNHHLFLADMVVKESGFG-ELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL 248 +AD+VVVNHHLF AD ++ +G EL+P A+ +IFDEAHQLP+IA+ +F +LS+RQ+ Sbjct: 212 EADLVVVNHHLFFADAALRGNGAASELLPTANTVIFDEAHQLPEIAAAFFADTLSTRQIQ 271 Query: 249 DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF 308 +L +D D +L + + +S+ D RL LG+ R E+ N + A Sbjct: 272 ELGRDSLSEAGHTAADLAELNRLVAAVDKSSMDLRLSLGDGERREPWTEVAENKAVIEAG 331 Query: 309 LLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF 368 L L+ S +DA RA+ L + QP YW+E R Sbjct: 332 EALLQALQELDAFLGPLAKASRGMDACSRRASEQVDCLAAYLKGGQPNRVYWFETFKRSV 391 Query: 369 TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDY 428 L TPLSVA + + + P SWI TSATLSV H RLG++ A +L L SPFD+ Sbjct: 392 VLHSTPLSVAAQLRAQRERNPCSWILTSATLSVGGRFEHIQHRLGLDSARTLRLESPFDF 451 Query: 429 SRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 RQA+ LP N QL A + P+I A GR F L TSH +R+ A R + Sbjct: 452 KRQAVFYAPEGLPAPNDSEYTAQLTAAMVPVINAARGRTFFLFTSHRALREAAAILRQKL 511 Query: 489 TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDP 548 P+L+QGE + +LL F GNA+L+ TSSFWEG+DVRG+ LS VIIDKLPF SP DP Sbjct: 512 DYPLLVQGEAGRRELLDAFREKGNAVLLGTSSFWEGIDVRGEALSCVIIDKLPFGSPGDP 571 Query: 549 LLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGA 608 + AR+E GG+ F + QLP AV+ L+QG GRLIRD D G+LV+ D RL+ R YG Sbjct: 572 VAAARIEHINRNGGNAFRDYQLPQAVLALRQGAGRLIRDPKDTGLLVVADPRLLTRSYGK 631 Query: 609 TFLASLPPAPRTRDIARAVRFLAIPSSR 636 F+ SLP RTR + RF +++ Sbjct: 632 LFVNSLPNMTRTRKLDVVQRFFDYLAAQ 659 >UniRef50_C0N252 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N252_9GAMM Length = 639 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 256/637 (40%), Positives = 378/637 (59%), Gaps = 5/637 (0%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + FA G L+ + G+ R Q +MA V++A+ + L+ EAGTGTGKT+AYLAPA+ Sbjct: 5 IEQLFAEGGLLSNHVEGYSARTQQIEMAEKVSEALANNEVLIAEAGTGTGKTFAYLAPAM 64 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + +KV ISTG+K LQDQL+ +DLP + + L ALLKGRSNYLC RL Sbjct: 65 LSGQKVFISTGTKNLQDQLFKKDLPKLREVLSVPLKAALLKGRSNYLCHHRLALAESEPS 124 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + Q + LR W +T GD+S + E S WP VTST DNCLG CP Y DCF Sbjct: 125 AVYQQ--HTLQTLREWMGKTSSGDLSETDLLEEQSPLWPKVTSTIDNCLGQQCPDYDDCF 182 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 +V+AR+KA +AD+V++NHHL ++DM +K SG GE++P+AD I DEAHQLP IASQ+ G Sbjct: 183 IVEARRKAQEADIVIINHHLLMSDMALKASGQGEVLPDADAFIIDEAHQLPAIASQFLGH 242 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 +SS Q+ +L++D + D + +++ A+++ F+L LG+ R +++ Sbjct: 243 RVSSHQIQELSRDSIREMELDATDMEDIRQSAEKIDNRLHQFKLTLGDKEQRLPWYQVVQ 302 Query: 301 NPQIQ-RAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEIN-QPGYS 358 A L +E + + R L+ ++R +L + Sbjct: 303 QQTTTQDALDSLIMAIEKLEQSLEPASERGRGLEQCYQRCQEIIKKLNVFSDNETDDNLI 362 Query: 359 YWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE 418 W + F L TP ++ F++ +A KP +W+FTSATL+V ++F +LGI+ Sbjct: 363 LWLDVRGASFILHATPQEISQHFQQWIADKPSAWVFTSATLTVAGKFNNFIQQLGIDDPV 422 Query: 419 SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 + SPFDY+ Q+LL + + + +A + + +IE + GR F+L TS+ + Sbjct: 423 TKSWQSPFDYASQSLLYMPSIPVEPSNNSYNSHIANIAKAVIEYSQGRIFLLFTSYRALH 482 Query: 479 DLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIID 538 ++A+ + M P+L+QG +K QLL +F GNA+L+ T+SFWEGVDVRG+ LS V+ID Sbjct: 483 EVADALQD-MEYPILVQGAGAKSQLLAEFREHGNAVLLGTNSFWEGVDVRGEALSCVLID 541 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 K+PF SP DP+L+AR+ R RGG+PF +Q+P AVI LKQG+GRLIRD D GVLV+CD Sbjct: 542 KIPFASPGDPVLEARINHLRERGGNPFRSIQIPSAVIQLKQGIGRLIRDKRDYGVLVLCD 601 Query: 599 NRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 R + +PYG F+ SLPP P T+ + F ++ ++ Sbjct: 602 PRFLSKPYGKIFMRSLPPMPITQQLDDVAEFFSLKAT 638 >UniRef50_C7RB18 Helicase c2 n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RB18_KANKD Length = 653 Score = 600 bits (1548), Expect = e-170, Method: Composition-based stats. Identities = 282/644 (43%), Positives = 398/644 (61%), Gaps = 13/644 (2%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + F+ DG LA GF R Q QMA ++ AI++ + +EAGTGTGKT+AYL PAL Sbjct: 7 LEELFSADGLLADYFEGFVRRSEQEQMAQSIESAIKEEASICIEAGTGTGKTFAYLVPAL 66 Query: 61 R----AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 + K+I+STG+K LQDQLY RDLP + KAL + +ALLKGR+NYLC RL+Q Sbjct: 67 KSWYEQDSKIIVSTGTKNLQDQLYFRDLPDICKALSISPKIALLKGRNNYLCQYRLQQSL 126 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 +G ++ + + WS +T GD++ C +A++ W VTSTN+NCLG++CP Y Sbjct: 127 ESGRFQSRSMVDTLSRVNEWSVKTTSGDLTQCTDLADNDPLWSYVTSTNENCLGAECPDY 186 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 +CFV KAR++A+ ADVVVVNHHL LADMV+KE GFGEL+P+AD+++ DE HQL DIA Sbjct: 187 AECFVAKARQRAVTADVVVVNHHLLLADMVLKEDGFGELLPDADIVVVDEGHQLADIAHS 246 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLR 296 ++G+ L+SRQL+++ +D + T KD +QL R+ + + RL LGE G + N + Sbjct: 247 FYGRRLTSRQLMEICRDTELEALTNAKDDRQLSVAVRRVEGAVNEIRLSLGESGQKKNWQ 306 Query: 297 ELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPG 356 +++ NPQ ++ L L + + RS LD+ +RA L + +Q Sbjct: 307 QIV-NPQRKQLLAELKKELGALHSRLERHASRSKGLDSCHKRAEECLHTLAFFSDKDQEL 365 Query: 357 -YSYWYECTSRHFTLALTPLSVADKFKELMAQK-PGSWIFTSATLSVNDD-----LHHFT 409 W E + F + TPL V+ F + ++ SW+FTSAT++ HF Sbjct: 366 TAVRWVETYRQGFAMMETPLDVSKAFAQSCREQSTRSWVFTSATITQASSKGTSDFKHFK 425 Query: 410 SRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFM 469 RLG+++A L LPSPFDY+ QA+L + R L + PI+EAN G F+ Sbjct: 426 ERLGLDEARELELPSPFDYASQAILHIPRGLADPRSKDFINNWQQAVLPIVEANPGGTFV 485 Query: 470 LCTSHAMMRDLAEQFRAT-MTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 L TS++ M + E ++ + VL+QGE K QL++ F GNA+L+ATSSFWEGVDV+ Sbjct: 486 LFTSYSAMHQVQELWKDKLLDKTVLMQGEKPKNQLIEDFREEGNAVLLATSSFWEGVDVK 545 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 G LS VIIDKLPF +PD+PL++A+++ R G +PF ++Q+P+A+I LKQG GRLIRD Sbjct: 546 GLALSCVIIDKLPFAAPDEPLIEAKIQAMRKSGKNPFFDLQIPEAIIALKQGAGRLIRDQ 605 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAI 632 DRGVLV+CD RL+ YG FL SLPP RTR+ + FL Sbjct: 606 KDRGVLVLCDPRLIANAYGKRFLRSLPPMRRTREQKTVIEFLQN 649 >UniRef50_A0L5B4 Helicase c2 n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L5B4_MAGSM Length = 660 Score = 596 bits (1536), Expect = e-168, Method: Composition-based stats. Identities = 236/637 (37%), Positives = 351/637 (55%), Gaps = 5/637 (0%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK 63 F P LA+ + ++PR Q +MA V +A + L+VEAGTGTGKT AY+ P L Sbjct: 14 LFGPQSALAQCLESYEPRAAQVRMAELVARAAHQQDLLIVEAGTGTGKTLAYMLPLLAMG 73 Query: 64 KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP 123 KKV++ST +KALQDQ+ +DLP + + + + LLKGR+NYLCL RL Q L Sbjct: 74 KKVVVSTATKALQDQILEKDLPLLRQVVGSRFSATLLKGRANYLCLHRLTQMRANRSLLR 133 Query: 124 VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVK 183 + + + + WS+ TV GD + E WP +++ D+CLG +CP + C++ K Sbjct: 134 HEARAWLEAIEQWSSTTVQGDRDELKELPERLDIWPELSTNGDDCLGQECPDLQACYLFK 193 Query: 184 ARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLS 243 AR +A +A +VVVNHHLF AD+ V+E GFGE++PE V++FDEAHQ+PD+ +++FG +S Sbjct: 194 ARARAKEAQLVVVNHHLFFADLAVREGGFGEILPEYQVVVFDEAHQIPDVVTRFFGLEVS 253 Query: 244 SRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQ 303 + Q+L+LA+D D L + + A R R L + Sbjct: 254 NFQMLELARDCRREMDMVGMDDLDLLHHLTVIEERAALLRSAFPVENVRDALAPHHLQEE 313 Query: 304 IQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYEC 363 RA ++ + L ++ + L RSA + + R ++ ++ P YWYE Sbjct: 314 PGRALVMAEQALHKLAELLEPHLERSAGMASCGRRLEKLLIASGSIRTLDDPARVYWYET 373 Query: 364 TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVN---DDLHHFTSRLGIEQ--AE 418 +R L +PL+V +E++ + +FTSATL+ H+F +LG++ A Sbjct: 374 RNRGVFLQASPLNVGLTMQEMLYPRVQCAVFTSATLATGQGEKGFHYFMQQLGLDAQVAT 433 Query: 419 SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 LP FDY QA L + R LP+ PG L ++ A+ GR L TS+ MM Sbjct: 434 CEQLPPVFDYGTQARLYLPRRLPEPTAPGFTAMFMEELVDLLHASRGRALCLFTSYRMMG 493 Query: 479 DLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIID 538 + + + + PV +QGE K LL+ F + ++L+ TS+FWEGVD+ G LS+V+ID Sbjct: 494 QVQQLLPSRIPYPVYVQGERPKRALLEMFKNHEASVLLGTSTFWEGVDIPGAALSMVVID 553 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 +LPFT PDDP+ AR C GG+PF ++ +P A++TLKQG GRL+R DRGV+ + D Sbjct: 554 RLPFTPPDDPISAARNRYCESEGGNPFMQLSVPQAILTLKQGAGRLLRRRSDRGVIAVLD 613 Query: 599 NRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 R+ RPYG F+ LPPA D+ F A + Sbjct: 614 TRISRRPYGKRFINGLPPATCIYDLQEVQHFFAQEPT 650 >UniRef50_B8GRE0 Helicase c2 n=6 Tax=Chromatiales RepID=B8GRE0_THISH Length = 651 Score = 595 bits (1534), Expect = e-168, Method: Composition-based stats. Identities = 302/638 (47%), Positives = 392/638 (61%), Gaps = 7/638 (1%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 ++ PDG LA+ + F+PR Q+QMA AV +A+E Q LVVEAGTG GKT+ YL P L Sbjct: 6 SEVLGPDGPLAETLTNFRPRAAQQQMAAAVERALEARQALVVEAGTGVGKTFGYLVPVLM 65 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKAL-----KYTGNVALLKGRSNYLCLERLEQQA 116 ++ I+STG+K LQDQL+ +DLP V AL VALLKGRSNYLC RL A Sbjct: 66 DGRRTILSTGTKNLQDQLFQKDLPFVRDALVGAGLGRVPRVALLKGRSNYLCRHRL-DLA 124 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 G L ++ + W ++T GDI + EDS WP VTST DNCLG DCP Y Sbjct: 125 REDGRLGAAQTDQLLRVVRWVSRTTRGDIGELSGIPEDSPLWPQVTSTPDNCLGQDCPEY 184 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 +DCFVV+AR++A +AD+VV+NHHL +AD+ +KE GFGE++P AD + DEAHQLPD+AS Sbjct: 185 EDCFVVRARREAQEADLVVINHHLLMADLTLKEEGFGEILPSADAFVLDEAHQLPDVASA 244 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLR 296 +FG+S+ SRQLLDLA+D E D L+ AD L+ + R +LG R Sbjct: 245 FFGRSVGSRQLLDLARDAVAEQLREASDMGDLRDAADALSMAVAALRSELGATSGRSPWT 304 Query: 297 ELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPG 356 + +I A L LE + R L+ RA R RL + +P Sbjct: 305 RHEQDARITGAMDSLVARLETLVMWLDTAADRGKGLEQCARRANTLRARLLAFMKP-EPD 363 Query: 357 YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ 416 W E +R F L TPL+VA++F E M P +WIF SATLSV HFT RLG+EQ Sbjct: 364 TVRWVETFTRAFALHATPLNVAERFGERMRAYPSAWIFASATLSVGGRFEHFTGRLGLEQ 423 Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 AE+L+L SPFDYSR A L + N+PQ N P + P+IEAN G FML TSH Sbjct: 424 AETLMLDSPFDYSRNARLYLPANMPQPNAPNHTAAVVEAALPVIEANPGGTFMLFTSHRA 483 Query: 477 MRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 +R+ A+ + +L+QG + +LL +F +AG+A+L+ SFWEGVDVRG LS VI Sbjct: 484 LREAAQLLEGRLERELLVQGTAPRDELLARFRAAGDAVLLGAHSFWEGVDVRGRALSCVI 543 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 IDKLPF +PDDPLL+AR++ R GG+PF + QLP AV++LKQGVGRLIRD DRGVL++ Sbjct: 544 IDKLPFAAPDDPLLEARLQAIRDAGGNPFMDYQLPQAVLSLKQGVGRLIRDVTDRGVLML 603 Query: 597 CDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPS 634 CD R+ + YG F++SLPP PR ++A FL Sbjct: 604 CDPRIRTKAYGRLFISSLPPIPRLDNLAEVASFLMTEE 641 >UniRef50_A6GN94 Helicase c2 n=1 Tax=Limnobacter sp. MED105 RepID=A6GN94_9BURK Length = 654 Score = 594 bits (1531), Expect = e-168, Method: Composition-based stats. Identities = 273/647 (42%), Positives = 384/647 (59%), Gaps = 11/647 (1%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + FAP G LA+ +PGF RE Q +MA AV AIE LVVEAGTGTGKT+AY+ PAL Sbjct: 8 LNEAFAPGGALARRLPGFSARESQIEMAQAVGNAIETQSALVVEAGTGTGKTFAYVVPAL 67 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + ++V++ST +K LQDQL+++DLP V +AL NVALLKGR NY+C LE+ Sbjct: 68 LSGRRVLLSTATKTLQDQLFNKDLPLVREALGVPVNVALLKGRQNYVCHFHLERALKEAR 127 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + + + ++ ++ +T GD + C V EDS W VTS DNCLG +CP +CF Sbjct: 128 LPSPREVDHLQKVKIFAGRTQSGDRADCAGVPEDSAVWSWVTSNKDNCLGGECPNASECF 187 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 V KAR+ A+DA+VVVVNHHLFLAD+ +KE G EL+P DV++FDEAHQLPDIA+ GQ Sbjct: 188 VNKARRDALDAEVVVVNHHLFLADLALKEEGIAELLPACDVIVFDEAHQLPDIATSLLGQ 247 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGY--RGNLREL 298 ++S+ Q + +D+ I RT D + + ++ R +G R + Sbjct: 248 AISTAQCQEFLRDVLIEGRTSSADAGDWDSVLRPMELALKEIRRIVGTEIDSARFTHAQF 307 Query: 299 LANPQIQRAFLLLDDTLELCYDVAKLSLGRSA----LLDAAFERATLYRTRLKRLKEINQ 354 LA + ++ LE ++ R+ L+ A E ++ Sbjct: 308 LALNGVAAVCADFENRLEGLIEMISPLSVRNESWVKLMGRASELCLRWQDWFSPATAQAD 367 Query: 355 PGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 W ++ +PL V++ F +L A++P +W+FTSATLS+ + L HFT ++G+ Sbjct: 368 EQSVRWVSVSTHVVQFCDSPLDVSNAFAKLYAEQPKAWVFTSATLSIKESLQHFTLQVGL 427 Query: 415 EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSH 474 ++ + LLLPSPFDY QALLCV NLP N+P +++L + P++ A+ G F LCTSH Sbjct: 428 DECQQLLLPSPFDYESQALLCVPDNLPFPNEPQFSKKLCDAVWPLLHASEGGVFFLCTSH 487 Query: 475 AMMRDLAEQFRAT-----MTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRG 529 ++ + E R + +L+QGE S+ +LL QF N +LV +SFWEGVD+RG Sbjct: 488 RAVKQVGEYLRERIEKDELDWSLLVQGEASRAELLDQFRVLNNPVLVGAASFWEGVDIRG 547 Query: 530 DTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDAD 589 D L LVIIDKLPF PDDP+ +A+ E + RGG+ F ++ LPDA I LKQG GRLIRD Sbjct: 548 DGLRLVIIDKLPFAPPDDPVFQAKSELIKNRGGNAFQDLSLPDAAIALKQGAGRLIRDET 607 Query: 590 DRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR 636 D GVL+I D RLV + YG SLPP RTR++ A+ F+ + Sbjct: 608 DWGVLLIGDRRLVEKGYGKLLWRSLPPFKRTRELKVAIEFMRDKRQK 654 >UniRef50_D0KYH8 Helicase c2 n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KYH8_HALNC Length = 668 Score = 593 bits (1528), Expect = e-168, Method: Composition-based stats. Identities = 271/638 (42%), Positives = 381/638 (59%), Gaps = 3/638 (0%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + D F G LA A G++PR Q QMA + AI + +V+EAGTG GKT+ YLAP L Sbjct: 21 LQDVFGESGVLAAAFSGYQPRAGQLQMAEIIRDAITDSRTVVIEAGTGVGKTFGYLAPIL 80 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 A +K I+STG+K LQDQ++SRDLP + + + T ALLKGRSNYLCL RLE+ G Sbjct: 81 LAGRKAIVSTGTKHLQDQIFSRDLPQIKQLMGSTTRTALLKGRSNYLCLHRLERAMTEGR 140 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 ++ + ++ WS +T DGDI+ C +V+E+ WPLVTSTN+NCLG +CP++ +CF Sbjct: 141 LKSPDWVTALHTIKGWSTRTRDGDIARCDAVSEEHGIWPLVTSTNENCLGKECPVFDECF 200 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 VVKAR+ A +AD+VV+NHHLF AD+ +++SGF +L+PEADV++ DEAHQLP+IAS +FG Sbjct: 201 VVKAREAAHEADLVVINHHLFCADIAIRQSGFAQLLPEADVVVLDEAHQLPEIASLFFGS 260 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE-PGYRGNLRELL 299 +LSS Q++DL +DI + E D L + + L L R +EL Sbjct: 261 ALSSGQMIDLLRDIVREQQAEAVDMSDLLGVVHQFELAIDPCVLALKNARTDRIAWQELR 320 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGY-S 358 + IQ AF L+ L +L+ R L + ERA R L + + Sbjct: 321 EDKTIQAAFDTLETRLADLTAALELAAPRGKGLASCHERAIQMRQSLSHFRRSEEITTEV 380 Query: 359 YWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE 418 W E + FTL +TP+ F +++ +P +W+F SATL+ D HFT RL + A Sbjct: 381 RWLERREKSFTLNITPMDAGQTFSDVVESQPRAWVFASATLAAGKDFSHFTRRLNLNLAL 440 Query: 419 SLLLPSPFDYSRQALLCVLRNLPQT-NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 PSPFDY QA++ + N P P ++ + P+++A+ GR F+L TSH + Sbjct: 441 CQQTPSPFDYPNQAIMYLPPNPPDPKTDPDYTLKILRAVFPVLKASGGRAFLLFTSHREL 500 Query: 478 RDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 + A+ + P+ +QG +K LL+QF +GN +L+ T SFWEGVDVRG+ LS+V+I Sbjct: 501 KKAADILEGKLPFPLFVQGTQAKAALLEQFRQSGNGVLLGTQSFWEGVDVRGEALSVVMI 560 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 D++PF SPDDP+ +AR + G PF + LP+A+IT KQGVGRLIRD DRGVLV+C Sbjct: 561 DRIPFASPDDPVRRAREAQIKESGHSPFAAMALPEAIITFKQGVGRLIRDVTDRGVLVLC 620 Query: 598 DNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 D RL +G L +LPP R+ I F + Sbjct: 621 DPRLQRTGFGRQILDALPPMRRSHSIDEIHDFFQYDQA 658 >UniRef50_Q1IHL6 Helicase c2 n=3 Tax=Acidobacteria RepID=Q1IHL6_ACIBL Length = 674 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 234/654 (35%), Positives = 359/654 (54%), Gaps = 19/654 (2%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 ++ F P G LAK+ P ++ R Q QMA AV QA+ + + L+VEAGTGTGKT AYL P + Sbjct: 20 LSQFFGPGGVLAKSHPAYEFRRGQLQMAQAVEQALTEKRHLIVEAGTGTGKTLAYLVPVI 79 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKAL-----KYTGNVALLKGRSNYLCLERLEQQ 115 R+ +VIISTG+K LQ+QL+ +D+P + +A+ V +KGR+NYLC ++L Sbjct: 80 RSGLRVIISTGTKNLQEQLFYKDVPFLERAIFGAESDQKLKVCYMKGRNNYLCRKKLYDL 139 Query: 116 ALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 + ++ + +R W T GD + +V E S WP + + D C+GS C Sbjct: 140 SDRPVLNGLEEIDQFRQIREWEAVTTTGDRAELTAVPEASLLWPKLDARADACVGSKCKD 199 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGE----LIPEADVMIFDEAHQLP 231 ++ CF+ + R+ AM++D+++VNHHL+ AD+ +K++ G ++PEA +IFDEAH+L Sbjct: 200 FERCFITEMRRTAMESDIIIVNHHLYFADLAIKQAADGAPDVGILPEAAAVIFDEAHELE 259 Query: 232 DIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGY 291 D+A YFG S S+ ++ DL +D+ A + + L + + R + +Q F + + Sbjct: 260 DVAGSYFGVSASNVRVDDLVRDVEFAIKEFHIASPTLLQASQRARERSQLFFSLVPQGEG 319 Query: 292 RGNLR-ELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLK 350 R + FL L + L Y + + L R R +L L Sbjct: 320 RFAFENRKEFLEENGEEFLALQNALGHLYSEIQALKEKPDELFNLARRTEELRVQLSFLL 379 Query: 351 EINQPGYSYWYECTS---------RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSV 401 E N YW E + L TP+ V+ + + + + TSAT++V Sbjct: 380 ESNDKNTVYWVERRGESRRAGRQGHNVFLQATPIDVSAILQRTLFANLNTAVLTSATIAV 439 Query: 402 NDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIE 461 + RLG++ A L++PS FDY QA+ V ++P + +R+ A +R ++E Sbjct: 440 GGGFQYARGRLGLQDARELVVPSHFDYETQAVFYVPPDMPDPREQLFSRKAADRIRQLLE 499 Query: 462 ANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSF 521 GR F L TS+A M D+ ++ + P+L QG+ K LL++F + A+L ATSSF Sbjct: 500 ITRGRAFCLFTSYAQMNDVYDRLLGELDYPMLKQGDAPKSALLEEFRTTPGAVLFATSSF 559 Query: 522 WEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGV 581 W+GVDV+G+ LS VIID+LPF P+DP++ AR+ GG+ F + Q+P AVI LKQG Sbjct: 560 WQGVDVQGEQLSCVIIDRLPFAVPNDPVVAARIRAIDADGGNAFFDYQVPSAVIALKQGF 619 Query: 582 GRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 GRLIR DRGV+ + DNR++ + YG F+ SLP RT DI + F A P + Sbjct: 620 GRLIRSLHDRGVVCLLDNRILKKQYGRVFVESLPKYWRTTDIRKVEEFFAGPEA 673 >UniRef50_B2SXR3 Helicase c2 n=26 Tax=Burkholderiales RepID=B2SXR3_BURPP Length = 755 Score = 587 bits (1514), Expect = e-166, Method: Composition-based stats. Identities = 287/704 (40%), Positives = 386/704 (54%), Gaps = 69/704 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQ--------------------- 39 + + FA +G LA+ I G++ R Q +M+ AV A+E Sbjct: 43 LDEIFAANGLLARQIDGYRSRASQIEMSRAVAAAMEASGRAMPEPAMFEAQKRPARRLQG 102 Query: 40 ----------------------PLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQD 77 L+VEAGTGTGKTYAYL PA+ KVI+STG+K LQD Sbjct: 103 AADTAAEAAEGVEAGGLDGSENTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTKHLQD 162 Query: 78 QLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWS 137 QL+ RD+PTV AL +VA+LKGR+NYLC L++ A G Q S + + ++ Sbjct: 163 QLFQRDIPTVRDALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQETSYLQDIVRFA 222 Query: 138 NQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVN 197 T GD + SV E + W +VTST +NCLG +CP YKDCFV++AR++A AD+VVVN Sbjct: 223 KITRTGDKAELASVPETAAVWSMVTSTRENCLGQECPHYKDCFVMQARREAQQADIVVVN 282 Query: 198 HHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIA 257 HHLF AD++++++G EL+P A+ +IFDEAHQLP+ A+ +FG++LS+ Q L+LA+D Sbjct: 283 HHLFFADIMLRDTGMAELLPTANTVIFDEAHQLPETATLFFGETLSTTQFLELARDSVAE 342 Query: 258 YRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLEL 317 ++T K L ++A+D RL E R ++ +L + + A L+ L+ Sbjct: 343 GLGHARETVDWVKLGATLERAARDVRLAFKEDSVRLSIGQLADDHPLFPALETLETELDA 402 Query: 318 CYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQP---------------------G 356 R+ + A RA + L P Sbjct: 403 LASALAGQAERAESIGACLRRARELQGVLAGWTTPPTPTEREAADVASTDGKTERADPNE 462 Query: 357 YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ 416 W E S L TPLSVA F + A P +WIFTSATLSV D H+ +++G+ Sbjct: 463 KVRWIEVFSHTVQLHETPLSVAPIFAKQRAGVPRAWIFTSATLSVRGDFTHYAAQMGLNA 522 Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 S+ LPSPFDY Q LL V RNLPQ + P + P IEA+ G FMLCT+ Sbjct: 523 KRSMTLPSPFDYPTQGLLYVPRNLPQPSSPMFTDAVFDAALPAIEASGGGVFMLCTTLRA 582 Query: 477 MRDLAEQFRAT-----MTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDT 531 + ++ + R T P+L+QG+ S+ +LL +F S GNA+LV + SFWEGVDVRGD Sbjct: 583 VDRISAKLRDTIEARGWDYPLLVQGDASRTELLDRFRSYGNAILVGSQSFWEGVDVRGDA 642 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 LSLV+IDKLPF PDDP+L AR+E +G PF QLP AVITLKQG GRLIR DR Sbjct: 643 LSLVVIDKLPFAPPDDPVLSARLEALTKKGLSPFAVHQLPQAVITLKQGAGRLIRAETDR 702 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 GVL+ICD RLV +PYG SLPP RTR+I F ++ Sbjct: 703 GVLMICDTRLVDKPYGRRIWQSLPPFKRTREIEVVREFFEESAT 746 >UniRef50_UPI0000E87EB6 Helicase c2:DEAD/DEAH box helicase, N-terminal n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87EB6 Length = 643 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 260/635 (40%), Positives = 375/635 (59%), Gaps = 5/635 (0%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 +T+ F +G L++ I G++ R Q +M+ V AI+ +PLVVEAGTG GKT+AYLAPAL Sbjct: 6 ITEFFDVNGPLSEVIEGYQIRPSQVEMSQMVDAAIKNQEPLVVEAGTGIGKTFAYLAPAL 65 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 A KVIIST +K LQDQL+++D+P + +ALK V LLKGR+NY+C RL+ G Sbjct: 66 AAGGKVIISTATKNLQDQLFNKDIPKIREALKIPIKVNLLKGRANYVCQLRLDDSIQGGQ 125 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + + + + ++ +S+ + G+IS +V E S WP+VTST DNCLG C K CF Sbjct: 126 FVNKEDGAYLEKIKQFSDHSNSGEISEVENVPEFSTIWPMVTSTADNCLGQGCEFAKSCF 185 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 ++KARK+A++A+VV+VNHHLF AD ++K+ E++P+AD +IFDEAHQ+PDIAS +FG Sbjct: 186 LLKARKEALNAEVVIVNHHLFFADFMLKDEDISEILPKADTVIFDEAHQVPDIASIFFGN 245 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 + S+ +L+ L +D + Y K+ ++L A + + + RL+ G R ++ Sbjct: 246 NFSTNELIYLMQDAQLLYDKLGKNQKKLIDIASGVQEEIKHLRLEFGSSSERVTFEKITN 305 Query: 301 NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 + + + E + L +S ER +L + Y YW Sbjct: 306 IDKFTEKLQSIHSSFEQLGKIFSLLDDQSPEQKKIMERYEGILEKLSHWLKEKNDQYVYW 365 Query: 361 YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL 420 + S+ +TP S+A+ F Q SWIFTSATL+VND F + +G+ A S Sbjct: 366 LDIFSKSIQFNMTPFSIAEGFGRFRKQNKISWIFTSATLAVNDSFDFFQNLMGLSDATSK 425 Query: 421 LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL 480 L SPFD+ A L V N+P N + P+I+A GR F+L TS MR++ Sbjct: 426 KLNSPFDFKNNACLYVPNNMPDPNSSIFNLTIIKKTYPLIQAAKGRTFILSTSLKSMREI 485 Query: 481 AEQFRATM-----TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 + ++ P+L QGE SK L+++F S GNA+L+ + SFWEG+DVRG +LSLV Sbjct: 486 SALLKSEFEEHDINFPILTQGEDSKRTLIERFKSYGNAVLIGSMSFWEGIDVRGPSLSLV 545 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 IIDKLPF SP DP+ ++R+ + G +PF QLP A+I+LKQG GRLIRD D+GVL+ Sbjct: 546 IIDKLPFHSPGDPVFESRINRLKALGENPFMSFQLPQAIISLKQGAGRLIRDEIDKGVLM 605 Query: 596 ICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 ICD R++ +PYG SLP RTR+ FL Sbjct: 606 ICDPRIIDKPYGKRIWKSLPDFKRTRNELDVTDFL 640 >UniRef50_B5EML2 Helicase c2 n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EML2_ACIF5 Length = 641 Score = 580 bits (1495), Expect = e-164, Method: Composition-based stats. Identities = 258/631 (40%), Positives = 364/631 (57%), Gaps = 3/631 (0%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK 63 G LA+A+P F+ RE Q+ MA V + G ++EAGTGTGKT+AYL PA+ + Sbjct: 14 LLGETGALARALPQFRAREQQQAMAAQVAHTLRDGGVALIEAGTGTGKTFAYLLPAMLSG 73 Query: 64 KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP 123 +KV++STGSKALQDQ+ +D+P + +A+ V+ LKGR+NYLC RL++ + G + Sbjct: 74 RKVLVSTGSKALQDQILEKDIPLLLRAMGKPLRVSRLKGRANYLCRHRLQRFSAEG--VA 131 Query: 124 VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVK 183 +++ + + W+ +T +GD+S SV EDS WPLVTST DNC GS+CP Y C V++ Sbjct: 132 PALVAPLARVADWAGRTREGDVSELTSVPEDSPIWPLVTSTRDNCPGSECPEYGRCHVIE 191 Query: 184 ARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLS 243 AR++A +A+++VVNHHL +D+ +K +G G+L+P D M+ DEAHQ+ D+A +YFGQ LS Sbjct: 192 ARRQAQEAEILVVNHHLLFSDLALKANGMGDLLPRVDAMVLDEAHQVLDLAGRYFGQHLS 251 Query: 244 SRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQ 303 S QL D +D E D + L A ++ +R LG RG+ L + Sbjct: 252 SHQLWDWGRDSRAETLAEAGDDEGLLAAAAQVETQTTAWRTVLGPGDERGSW-ALNPDSA 310 Query: 304 IQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYEC 363 AF L + + R L+ R + + N P +W E Sbjct: 311 EGSAFARLRQAVAELGQALNAAAARGKGLEQCAARGVVLLATVDFFAAHNAPNMVFWQEK 370 Query: 364 TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLP 423 SR L TPL VA + + + S I TSATL V D LG+ +L Sbjct: 371 KSRTVQLHATPLDVAAPLQRHLLEPVESVILTSATLRVGDSFASTERALGLTAVSTLTAA 430 Query: 424 SPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQ 483 SPFDY+RQ+LL + +P+ P R P+IEA+ GR F L TSH +++ A Sbjct: 431 SPFDYARQSLLYLPPLMPEPGHPSYTRACLDAAAPVIEASGGRTFFLFTSHRALQEAAVS 490 Query: 484 FRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFT 543 ++ P+L+QG + +LL +F S GNA+L+ +SFWEGVDV+G+ LS VIIDKLPF Sbjct: 491 LPQRLSFPILVQGSMPRPRLLDRFRSLGNAVLLGAASFWEGVDVQGEALSCVIIDKLPFA 550 Query: 544 SPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 +P DP+L+AR E C+ GG+PF E+Q+P AVI L+QGVGRLIR DRGVL++CD RL Sbjct: 551 NPSDPILRARTEQCQAEGGEPFRELQIPQAVIALRQGVGRLIRSEMDRGVLMLCDPRLRS 610 Query: 604 RPYGATFLASLPPAPRTRDIARAVRFLAIPS 634 + YG FL SLPP R + F + Sbjct: 611 KGYGRIFLDSLPPMRRVSSLDAIHAFWRGEA 641 >UniRef50_B2JIT4 Helicase c2 n=59 Tax=Betaproteobacteria RepID=B2JIT4_BURP8 Length = 757 Score = 577 bits (1488), Expect = e-163, Method: Composition-based stats. Identities = 286/702 (40%), Positives = 382/702 (54%), Gaps = 71/702 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQR--------------------QMAVAVTQ------- 33 + D FA DG LA+ I G++PR Q M A + Sbjct: 51 LADIFAADGLLARQIDGYRPRASQIEMARAVAAAMEASGRAMPEPAMFEAQKRPARRLQH 110 Query: 34 -------------------AIEKGQPLVV-EAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 A+E G+ ++ EAGTGTGKTYAYL PA+ KVI+STG+K Sbjct: 111 TSSASATDAPADQASSPEGALEGGENTLIVEAGTGTGKTYAYLVPAMLWGGKVIVSTGTK 170 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 LQDQL+ RD+PTV AL +VA+LKGR+NYLC L++ A G Q S + + Sbjct: 171 HLQDQLFLRDIPTVRDALAVPVSVAMLKGRANYLCHYYLQRTADNGRLPSRQETSYLQDI 230 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADV 193 ++ T GD + SV E + W +VTST DNCLG +CP YKDCFV++AR++A AD+ Sbjct: 231 IRFAKITRTGDKAELASVPETAAVWSMVTSTRDNCLGQECPHYKDCFVMQARREAQQADI 290 Query: 194 VVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKD 253 VVVNHHLF AD++++++G EL+P A+ +IFDEAHQLP+ A+ +FG++LS+ Q L+LA+D Sbjct: 291 VVVNHHLFFADIMLRDTGMAELLPTANTVIFDEAHQLPETATLFFGETLSTTQFLELARD 350 Query: 254 ITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDD 313 +D K L +SA+D RL E R ++ +L + + A ++ Sbjct: 351 SVAEGLGHARDAVDWVKLGAALERSARDVRLAFKEDSVRLSIGQLPDDHPLFPALEAVET 410 Query: 314 TLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQP------------------ 355 L+ R+ L A RA + L Sbjct: 411 ELDALASALAGQSERAESLGALLRRARELQEVLAGWTAPPTEAERDAASDAGAAPEKSDP 470 Query: 356 -GYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 W E S L TPLSVA F + A P +W+FTSATLSV D H+ +++G+ Sbjct: 471 NEKVRWIEVFSHTVQLHETPLSVAPIFAKQRAGVPRAWVFTSATLSVRGDFTHYAAQMGL 530 Query: 415 EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSH 474 S+ LPSPFDY Q LL V RNLPQ + P + P IEA+ G FMLCT+ Sbjct: 531 NSRRSMTLPSPFDYGTQGLLYVPRNLPQPSSPMFTDAVFDAALPAIEASGGGVFMLCTTL 590 Query: 475 AMMRDLAEQFRA-----TMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRG 529 + +A + R +P+L+QG+ S+ +LL +F S GNA+LV + SFWEGVDVRG Sbjct: 591 RAVDRIASKLRDVIESRGWNMPLLVQGDASRTELLDRFRSYGNAILVGSQSFWEGVDVRG 650 Query: 530 DTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDAD 589 D LSLV+IDKLPF PDDP+L AR++ +G PF QLP AVITLKQG GRLIR Sbjct: 651 DALSLVVIDKLPFAPPDDPVLSARLDALTKKGLSPFAVHQLPQAVITLKQGAGRLIRSET 710 Query: 590 DRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 DRGVL+ICD RLV +PYG SLPP RTR++ F Sbjct: 711 DRGVLMICDTRLVDKPYGRRIWQSLPPFKRTREMDVVREFFE 752 >UniRef50_A0LLQ3 Helicase c2 n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LLQ3_SYNFM Length = 646 Score = 571 bits (1471), Expect = e-161, Method: Composition-based stats. Identities = 223/641 (34%), Positives = 326/641 (50%), Gaps = 7/641 (1%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 M F PDG LA+ + F+ R Q +MA AV +A+ PLVVEAGTGTGKT+AYL PA+ Sbjct: 1 MRRYFGPDGLLAENVTHFEFRPSQLEMAEAVLEALGARSPLVVEAGTGTGKTWAYLVPAI 60 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + K+ ++STG+K LQDQ+ +D+P + + + LKGR NYLC R + + Sbjct: 61 LSGKRTVVSTGTKTLQDQILDQDIPFLKRTVYPKLRAVCLKGRGNYLCHRRFKDFSYQPT 120 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + W+ +T GD + + + W V S ++CLG C + CF Sbjct: 121 LWNKDEAKLWSRFQKWATRTRTGDRAEISWLPDQFHTWNEVCSAGEHCLGQQCSDVQRCF 180 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 V + R +A A +VVVNHHLF AD+ +++ ++PE D +IFDEAHQL D+ QYFG Sbjct: 181 VTRLRAEAAQAHLVVVNHHLFFADLALRDKADTGVLPEYDAVIFDEAHQLEDVMGQYFGI 240 Query: 241 SLSSRQLLDLAKDITIAYRTE------LKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN 294 +S L++L + + ++ E D +++ + + L + ++ R Sbjct: 241 QFNSYGLMELTRVLQREFKKETGASHRFHDARRIVQQLEVLNRLLHRHLFEVRGSQGRFP 300 Query: 295 LRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ 354 L ++ L L+ + + +A RA+ ++ L Sbjct: 301 LDMSRMGKNFVQSCNQLIHALDELAPMIAPAEDLPLSFEAYHRRASDLSGAVRMLLAQED 360 Query: 355 PGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 YWYE L TP+ V F+ + I TSATLSV LGI Sbjct: 361 ESLVYWYEVGQNALFLNATPIEVCSIFRRRVLTPNRPVILTSATLSVAGSFDFVRQSLGI 420 Query: 415 -EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTS 473 ++S+ LPSPF Y+ Q +L + R P N+ RQ+A I+ GR L TS Sbjct: 421 APDSKSIRLPSPFAYAEQTMLYIPRRFPAPNEHDFCRQIAEQSVEILLKTRGRALFLFTS 480 Query: 474 HAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLS 533 + M ++ + R + P+L+QG+ K LL +F + ++L ATSSF +G+DV G+ LS Sbjct: 481 YRNMNEVHQLLRDRLPYPILVQGQKPKRALLAEFKESIGSVLFATSSFRQGIDVPGEALS 540 Query: 534 LVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGV 593 ++IDKLPF PDDPL ARM+ +G F Q+P AVI LKQGVGRLIR + DRG+ Sbjct: 541 CLLIDKLPFEVPDDPLAAARMDFITRQGKSSFFGYQVPRAVIQLKQGVGRLIRSSSDRGL 600 Query: 594 LVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPS 634 +VI D RL+ + YG FL SLPP + F PS Sbjct: 601 IVIFDVRLLQKNYGQIFLKSLPPCRLVHQLDAIDEFQWGPS 641 >UniRef50_Q31G59 Putative uncharacterized protein n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31G59_THICR Length = 636 Score = 570 bits (1469), Expect = e-161, Method: Composition-based stats. Identities = 240/628 (38%), Positives = 350/628 (55%), Gaps = 1/628 (0%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + DGQL++ ++ R Q +MA V + I++ Q L+ EAGTGTGKT+AYL PAL Sbjct: 7 IQSILGKDGQLSQNTSDYEVRHAQVEMAETVAEVIDEDQTLLAEAGTGTGKTFAYLIPAL 66 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + KKVI+ST +K LQDQL +D+P + G +LKGR NY+C +RLE A Sbjct: 67 LSGKKVIVSTATKTLQDQLLRKDIPLLMDICNAKGTAKILKGRENYICPQRLE-IAETAE 125 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 ++ + L+ W +T+ GD S ++ E+ W V + + C ++C CF Sbjct: 126 QNTKEVWRKLSLIHDWQEKTLIGDKSELTTLDENDPIWSRVCARMEFCQANECTGDNGCF 185 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 +++A DA++++VNHHLF AD+ ++E GFGE++PEAD+ IFDEAHQLPDIA+Q+ G Sbjct: 186 YPGVKQQATDAEILIVNHHLFCADLALREQGFGEILPEADIYIFDEAHQLPDIAAQFLGF 245 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 S+S QL +L +D+ +AY+ E +T +L A + + F LG+ R Sbjct: 246 SVSRFQLDELVRDVRLAYKKESPETIELSDQAKAVEDKIRIFNEALGKWEKRWTWESFSE 305 Query: 301 NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 + L + L L +V K R LL A ++R + +++ + + W Sbjct: 306 AKTGHKTLEHLRNQLSLLAEVIKPITDRGKLLSALYKRTQEFEKQIETWLKASSENQIRW 365 Query: 361 YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL 420 E + F L LTPLSVA F G+WIFTSATLSVN +F RLG+E A + Sbjct: 366 VESSQARFKLNLTPLSVAAPFSRQRDALGGAWIFTSATLSVNQSFDYFAHRLGLESARTH 425 Query: 421 LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL 480 SPFDY +QA++ LP P + P++ A+ GR F+L TSH +++ Sbjct: 426 QWESPFDYEQQAVIYHPIGLPDPKHPDYIKICLRAAWPLLLASQGRAFLLFTSHKALQEA 485 Query: 481 AEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL 540 +++QG+ K LL +F NA+L+ TSSFWEGVDV+GD L LV+ID++ Sbjct: 486 KVILSQHWEGTLMVQGDGPKTTLLARFKETENAILLGTSSFWEGVDVKGDALKLVLIDRI 545 Query: 541 PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR 600 PF PDDP+++AR + +G F Q+P+A I LKQG GRLIRD+ D+GVL++CD R Sbjct: 546 PFIPPDDPVVQARESFLKQKGLSGFFNFQIPEATIALKQGAGRLIRDSSDKGVLMLCDPR 605 Query: 601 LVMRPYGATFLASLPPAPRTRDIARAVR 628 L +PYG S P D+ A Sbjct: 606 LTQKPYGKIITNSFPSFKWVYDVNEAKE 633 >UniRef50_A0KWC1 Helicase c2 n=22 Tax=Gammaproteobacteria RepID=A0KWC1_SHESA Length = 674 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 297/632 (46%), Positives = 391/632 (61%), Gaps = 3/632 (0%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + FA DG LAK I GF R+ Q +MA +++AI ++EAGTG GKT+AYL PA+ Sbjct: 42 VLRAFASDGVLAKHIQGFSARQSQVEMAQIISEAIASKGNALIEAGTGVGKTFAYLIPAI 101 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + K+VI+STGSK LQ+QL+ +DLP ++ L +ALLKGR+NYLC RL++Q Sbjct: 102 LSGKQVIVSTGSKNLQEQLFLKDLPALTSMLGIAPKLALLKGRNNYLCQHRLDKQMQEAS 161 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + ++L D++ + W+ + DGDI SVAE+S A PLV ST + CLG C Y CF Sbjct: 162 HIEARLLDDLLKINQWAGMSKDGDIGGLTSVAENSPALPLVVSTKETCLGQRCEFYDACF 221 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 KAR +AMDA ++VVNHHLF AD V+K++GF EL+P+ DV+IFDEAH LPDI YFGQ Sbjct: 222 TRKARGRAMDAKIIVVNHHLFFADSVLKDTGFAELLPDPDVVIFDEAHLLPDICVSYFGQ 281 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 SSR + D + + Y+TEL DT Q+ + R D+ L G + R L Sbjct: 282 QSSSRTIDDYLQKLLQIYQTELSDTGQIAQFCQRCLTKLSDWHNALFSSG-ESDWRLQLG 340 Query: 301 NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 N I A L L + + +GRS LLD + T +L + + P +Y Sbjct: 341 NKSIALASWDLLAELTALQKLLLVHVGRSELLDDIAVKLTELNHKLNQFFNCDNPQAAYS 400 Query: 361 YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL 420 E SR L ++P+++A + ++ + SWIFTSATL VN L HF LGI A++ Sbjct: 401 VEFGSRFVMLRMSPINIARECQQ-LFVANTSWIFTSATLQVNRSLDHFAQELGISDAKAH 459 Query: 421 LLPSPFDYSRQALLCVLRNLPQ-TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 +L SPFDY RQAL CV R L TNQ + +QL + IEA GR F+L TSH M+ Sbjct: 460 ILDSPFDYPRQALFCVPRQLGNVTNQQQALKQLVDVCVKAIEAAQGRTFILFTSHKMLEQ 519 Query: 480 LAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDK 539 A R P+L+QG+ K LL +F GNA+L+ TSSFWEGVDVRG LS VIIDK Sbjct: 520 TALALRTRTQYPLLVQGQAGKQSLLTKFRQLGNAVLLGTSSFWEGVDVRGKLLSCVIIDK 579 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LPF SPD+PL +AR ++ +GGDPF +V LP A+I LKQGVGRLIRD D GVL++CDN Sbjct: 580 LPFVSPDEPLYRARADNISRQGGDPFTQVSLPQAIIALKQGVGRLIRDEKDCGVLILCDN 639 Query: 600 RLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 R+V R YG FL SLPP RTRD+ +A++FL Sbjct: 640 RIVNRAYGQAFLNSLPPMSRTRDLDQALQFLR 671 >UniRef50_B4ST01 Helicase c2 n=23 Tax=Gammaproteobacteria RepID=B4ST01_STRM5 Length = 681 Score = 567 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 274/646 (42%), Positives = 375/646 (58%), Gaps = 15/646 (2%) Query: 3 DDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA 62 + + G LA + F PR Q ++ A+ A+++ L+ EAGTGTGKT+AYL P L + Sbjct: 10 EALSDGGALASHLDAFVPRPAQLRLTEAIADALQQRDLLLAEAGTGTGKTFAYLVPVLLS 69 Query: 63 KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL 122 + IISTG++ALQDQLY RDLP V +AL ALLKGR+NYLC RL+Q Sbjct: 70 GLRTIISTGTRALQDQLYHRDLPRVRQALGVGLRSALLKGRANYLCRYRLQQARGEPRFS 129 Query: 123 PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVV 182 + + + +WS ++ GDI+ +A+DS P+VTST DNCLG+DCP + DCFVV Sbjct: 130 SPEQAAQFQRILAWSGRSEFGDIAELDGLADDSPLLPMVTSTVDNCLGTDCPFWDDCFVV 189 Query: 183 KARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 +AR++A ADVVVVNHHL LAD+ +K+ GFGEL+P A + DEAHQLP++A+Q+FG+ Sbjct: 190 RARQRAQAADVVVVNHHLLLADLALKQDGFGELLPGAQAFVIDEAHQLPELAAQFFGEGF 249 Query: 243 SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANP 302 R +L +D R LQ+ D+L Q+ R + RG LA P Sbjct: 250 GMRPWQELGRDCLAEARGVGGAQSALQEPVDQLQQALLALRSAMEGLPSRGTQWRALAMP 309 Query: 303 QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQP------- 355 Q++ F + L + + +A LDA RA +RL R ++P Sbjct: 310 QVRDGFDTVMAGLVMLEQALQPLREAAAGLDACHARAREAVSRLSRWLGDDEPTLDFDTD 369 Query: 356 -------GYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHF 408 WYE T R F TP+ V+ +E + +WIFTSATL+V H Sbjct: 370 PSEANSAADVLWYELTPRGFRCQRTPMDVSGPLREHRERSRAAWIFTSATLTVGGGFDHI 429 Query: 409 TSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCF 468 +RLG++ +L+ PSPF++ QAL + LP G L LRP+++A+ GR F Sbjct: 430 ATRLGLDDPHTLVQPSPFNWPEQALCYMPEGLPDPAARGFGTALIQSLRPVLQASQGRAF 489 Query: 469 MLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 +L SH +R+ AE R P+ +QGE + LLQ+F +GN +L+ ++SF EGVDV Sbjct: 490 LLFASHRALREAAEALRD-GPWPLFVQGEAPRATLLQRFRESGNGVLLGSASFREGVDVV 548 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 G+ LS+V+IDKLPF +PDDP+ +AR+E R +GG+PF + QLP AVI LKQGVGRLIR Sbjct: 549 GEALSVVMIDKLPFAAPDDPVYEARLEAIRSQGGNPFRDEQLPQAVIALKQGVGRLIRSE 608 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPS 634 DRGVLV+CD RL+ R YG FL SLPP RTR +A F Sbjct: 609 SDRGVLVLCDPRLLNRGYGRVFLDSLPPFRRTRSLADVQAFFTPQW 654 >UniRef50_Q5ZU85 ATP dependent DNA helicase (DEAD box family) Rad3 n=6 Tax=Legionella RepID=Q5ZU85_LEGPH Length = 666 Score = 563 bits (1452), Expect = e-159, Method: Composition-based stats. Identities = 269/631 (42%), Positives = 370/631 (58%), Gaps = 6/631 (0%) Query: 3 DDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA 62 + G+L+ AIPGF R PQ +AVA+ AI + LV EAGTGTGKT+AYL P L + Sbjct: 27 RTLSEKGRLSTAIPGFVARAPQADLAVAIANAIVQRSILVAEAGTGTGKTFAYLLPCLLS 86 Query: 63 KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL 122 KK +IST +K LQDQL+ +DLPT+ +AL + + LKGRSNY+C R+E+ A G Sbjct: 87 GKKALISTATKTLQDQLFQKDLPTLIRALGLSVRIQNLKGRSNYICQYRVEKHAEEGQFQ 146 Query: 123 PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVV 182 Q +++ +R +Q +G S + EDS W VTST DNCLG++CP ++ CF+V Sbjct: 147 SPQCAHEILHVRDKLSQMQEGVRSELPEINEDSSVWHYVTSTTDNCLGAECPNHETCFLV 206 Query: 183 KARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 KARK+AM+AD+VV+NHHLF AD +K+ GF EL+P DV++FDEAHQL DIAS + G+ L Sbjct: 207 KARKRAMEADIVVINHHLFFADSQLKKDGFSELLPGVDVVVFDEAHQLADIASNFNGERL 266 Query: 243 SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANP 302 +RQ DL D+ + Q L+ + + + L R + + N Sbjct: 267 GTRQFKDLVDDMLNEWPILDLANQPLKSISHKADKLVDQLLNALPTREERISWDLVKRNK 326 Query: 303 QIQRAF---LLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359 + A+ L L D L C + L ER T L E N Sbjct: 327 EFMEAWNTWLSLKDELIQCLE--SKDTADIPGLKRCKERLLDLETVLLSFTEENN-HKIR 383 Query: 360 WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES 419 W E TP VA+ F +L+ + ++IFTSATL++ F LG+++ ++ Sbjct: 384 WIERFKHTLVFHATPYDVAESFSQLLKDQSCAYIFTSATLTMASVFDSFCKPLGLDKVQT 443 Query: 420 LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 LLL SPFDY +QALL + R +P L P+IEA GRCF L TSH ++ Sbjct: 444 LLLSSPFDYQQQALLYLPRGIPDPKDAHYYEALLEKALPVIEACGGRCFFLFTSHKAVKL 503 Query: 480 LAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDK 539 +A+ T+ P+L+QG+ +K LL +F GNA+L+ TS+FWEGVDV+G+ LS VIIDK Sbjct: 504 VAQMMSNTLKYPLLIQGDEAKPILLSRFRQLGNAVLLGTSTFWEGVDVKGEALSCVIIDK 563 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LPF +P DP+++ RM + +G FDE+ LP+AVI LKQGVGRLIRD D+G+L+I D Sbjct: 564 LPFANPVDPVIRGRMSYLKKKGLSGFDELSLPNAVIALKQGVGRLIRDITDKGILMIADP 623 Query: 600 RLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 RL R YG T LASLP P+TRD + + F+ Sbjct: 624 RLTGREYGRTILASLPGLPKTRDEEKVLHFI 654 >UniRef50_B9ZQY0 Helicase c2 n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZQY0_9GAMM Length = 664 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 291/643 (45%), Positives = 380/643 (59%), Gaps = 10/643 (1%) Query: 3 DDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAI-EKGQPLVVEAGTGTGKTYAYLAPALR 61 +P G LA+A+ GF+PREPQ++MAVAV A+ + L+VEA TG GKT+AYL PAL+ Sbjct: 19 RALSPGGDLAEALHGFRPREPQQRMAVAVESALGQAPTALLVEAATGVGKTFAYLVPALQ 78 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 A++K +ISTG+K LQDQL+ RDLPTV +AL Y ALLKGR+NYLC RLE A G Sbjct: 79 ARRKALISTGTKTLQDQLFERDLPTVCEALGYRPRTALLKGRANYLCHYRLELAAAEAGG 138 Query: 122 LPVQILSD-----VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 + + LR ++ GD+ +AEDS WP VTST DNCLG +CP Y Sbjct: 139 QTQRSAQRERMPVIEALRQFARTHPTGDLGQAGILAEDSPLWPQVTSTVDNCLGGECPQY 198 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 DCFVV+ARK+A DAD+VVVNHHL LADM +KE GFGEL+PE D +I DEAHQLP+IA Sbjct: 199 NDCFVVQARKRAQDADIVVVNHHLLLADMALKEEGFGELLPEVDAVIVDEAHQLPEIAGA 258 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLR 296 +FG S+ SR L DLA+D+ + +++ A L + R Sbjct: 259 FFGVSVGSRALRDLARDVRREQEQAAPEMVMIREAAVELETVVKKLLEATQGMEPRAAWD 318 Query: 297 ELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPG 356 + Q+ + LD+ L D + R L+ R L R RL+ +E + P Sbjct: 319 VVNEKGQVDPSLEELDEALRALSDALAPATERGPGLEQVQGRVLLMRERLQGWRE-DTPD 377 Query: 357 YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE- 415 W E ++ L TPL A + A +P +W+FTSATL+V +D H + RLG+ Sbjct: 378 TVAWVERFAQSLILHRTPLDAARPLAQRRAARPAAWVFTSATLAVGEDFTHASRRLGLPV 437 Query: 416 QAESLLLPSPFDYSRQALLCVLRN-LPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSH 474 L SPFD++RQA L + LP N P R A P++ N G F L TSH Sbjct: 438 DVAQQRLESPFDFARQACLVHPQPPLPNPNSPDYTRACVAWAWPLLRDNPGGGFFLFTSH 497 Query: 475 AMMRDLAEQFRATMT-LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLS 533 +++ A RA + +L+QGE + LL +F +GNA L+ SFWEGVD+RG+ LS Sbjct: 498 RALQEAAALLRAELPDRELLVQGEQPRNDLLARFRESGNAWLLGAHSFWEGVDIRGEALS 557 Query: 534 LVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGV 593 +VIID+LPF +P+DP+L+AR + G PF E LP AV+ LKQG GRLIRDADD G+ Sbjct: 558 VVIIDRLPFAAPNDPVLQARAQALEAEGRSPFMEFSLPQAVLALKQGAGRLIRDADDAGI 617 Query: 594 LVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR 636 L ICD RL +PYG FLASLPP RTRD A++FLA R Sbjct: 618 LAICDPRLTGKPYGRRFLASLPPFYRTRDPIAALQFLATARER 660 >UniRef50_Q1CXN9 Putative ATP-dependent helicase n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CXN9_MYXXD Length = 662 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 238/648 (36%), Positives = 352/648 (54%), Gaps = 19/648 (2%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + P G L A+P ++ R Q QMA AV +A + L+ EAGTGTGKT AYL PAL Sbjct: 11 VDSLLGPGGALEVALPAYEHRPEQLQMARAVERAFAEHSYLLAEAGTGTGKTLAYLVPAL 70 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + ++V++ST +K LQDQ++ +DLP + + + A LKGRSNYLCL R + + A Sbjct: 71 LSGRRVVVSTATKTLQDQIFFKDLPLMREKMGLRFEAAYLKGRSNYLCLHRYDAFSKAPQ 130 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + L++W+ +T GD S E AW +++T++ C+G+ CP Y+ CF Sbjct: 131 FGSREESRYWPKLKAWAEETDTGDRSELDL-PESFSAWSRLSTTSETCVGTRCPQYETCF 189 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGF--GELIPEADVMIFDEAHQLPDIASQYF 238 V + RK+A AD++VVNHHLF AD+ ++ SG ++P + +IFDEAH L D AS +F Sbjct: 190 VTRMRKRAEQADLLVVNHHLFFADLALRSSGKRTEGVLPWYEAVIFDEAHALEDAASGHF 249 Query: 239 GQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQ----LGEPGYRGN 294 G S+S+ +L +LA+D + + + L+ A RL A Q LG G+ + Sbjct: 250 GCSVSNYRLEELARDAVASLKEDDARHAMLRALAARLRAGADALFAQAPRALGLSGHEAS 309 Query: 295 LRELLANPQIQRAFLLLDDTLELCYDVAKLSL-GRSALLDAAFERATLYRTRLKRLKEIN 353 + L + + L+ + ++ ++ R L A R+ +L L++ Sbjct: 310 V--ALRAEVMAKLSTPLEGVRDALAALSAFTVGEREPELAAITRRSDEMEEQLSFLEKAE 367 Query: 354 QPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG 413 + YW E + L +P+ VA + +E M + ++TSATL+ + F +R+G Sbjct: 368 SSDHVYWAEQRGKGLFLRASPIDVAKELRERMYGALDTVVYTSATLAADSRFDFFANRMG 427 Query: 414 I--------EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNG 465 + + +L +PSPFDY QA L + +LP + PG + A + + E G Sbjct: 428 LYGEDGQPVTRVRTLAVPSPFDYPSQAALYLPTHLPDPSAPGFIEEAAEEIERLCEVTGG 487 Query: 466 RCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGV 525 R F+L TS M E + LLQGE K QLL+ F ++L A SFWEGV Sbjct: 488 RAFVLFTSLRNMVRAYELVAPRLPYQSLLQGERPKQQLLEAFRETP-SVLFAAHSFWEGV 546 Query: 526 DVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLI 585 DV GD LSLVIID+LPF SP DPL+ AR+ + RG +PF++ QLP A + L+QG GRLI Sbjct: 547 DVPGDALSLVIIDRLPFASPGDPLVAARINQLQQRGEEPFEQYQLPHAALALRQGFGRLI 606 Query: 586 RDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIP 633 R DRG++ + D R+V + YG FL SLPPA R D+ R+ P Sbjct: 607 RTQSDRGIVAMLDRRIVTKAYGRVFLDSLPPARRMEDVVSLSRWFNGP 654 >UniRef50_A9IIW5 Probable ATP-dependent helicase n=6 Tax=Proteobacteria RepID=A9IIW5_BORPD Length = 693 Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats. Identities = 266/683 (38%), Positives = 374/683 (54%), Gaps = 53/683 (7%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 +++ FA DG LA A+PG+ PR Q ++A A+ +AI LV EAGTG GKT+AYL PA Sbjct: 6 ISEFFAADGPLASALPGYAPRPAQVELAQAIGRAITDRATLVAEAGTGIGKTWAYLVPAF 65 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 A KVIISTG++ LQDQLY+RDLP V AL ALLKGR+NY+C L++ Sbjct: 66 VAGGKVIISTGTRTLQDQLYTRDLPRVRAALAAPVTAALLKGRANYVCHYHLDRLQGDER 125 Query: 121 DLPVQ-ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 L + +S + ++ ++ + GD + V ED+ W VTST +NCLG DCP +DC Sbjct: 126 ALKSRTEISQLRQIQVFAGISKTGDRADLGKVPEDADIWQRVTSTRENCLGQDCPRIRDC 185 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 FVVKAR++A +ADVVVVNH LF+AD+V++E G +L+PEAD +IFDEAHQLPD A+++ G Sbjct: 186 FVVKARRQAQEADVVVVNHALFMADLVLREEGVTDLLPEADTVIFDEAHQLPDTATRFLG 245 Query: 240 QSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE----PGYRGNL 295 S+S+ QLLD + + A ++ + + ++ +A++ RL PG + Sbjct: 246 SSVSTHQLLDFGRALEAAGLAYAREAAKWSDVSRQVETAARELRLACAPLDQLPGRKATF 305 Query: 296 RELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLK----- 350 + Q A L ++ + L AA RL R Sbjct: 306 EAIPEPAQFDAALAALRQAVDAATRALGAVAEKHPDLAAAARGGAEISLRLARWALPARE 365 Query: 351 --EINQPGY-----------------------------------SYWYECTSRHFTLALT 373 + G+ W E H L Sbjct: 366 GAAHDDEGWGRDTHALTQPADDGPAVPQAVLQGLSAAADYTGPAVRWVEHGQHHVRLHSA 425 Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQAL 433 PLSVA F + +WI TSATLSV+ D HH+TS+LG+ A + SPFDY+ Q L Sbjct: 426 PLSVAQAFSR-FRKPGQAWILTSATLSVHGDFHHYTSQLGLNDARTGRWESPFDYTGQGL 484 Query: 434 LCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT---- 489 L V R++P+ P A + L P+++A+ G +LCT+ + +A Sbjct: 485 LFVPRDMPEPQSPRFAERFVQTLMPLLQASPGGTLVLCTTLRAVDRVAGLLAEAFEDHGH 544 Query: 490 -LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDP 548 P+L QG+ ++ LL++F + +LV ++SFWEG+D+ GD L+LV IDKLPF PDDP Sbjct: 545 EWPLLKQGDATRRDLLERFCKLEHPVLVGSASFWEGIDLPGDVLTLVAIDKLPFAPPDDP 604 Query: 549 LLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGA 608 +++AR+ CR+RGG+PF E QLP+A I+LKQG GRLIR D GVL++ D RLV +PYG Sbjct: 605 VIEARLRACRVRGGNPFAEYQLPEAAISLKQGAGRLIRTESDWGVLMVGDARLVEKPYGK 664 Query: 609 TFLASLPPAPRTRDIARAVRFLA 631 LPP RTRD+ + F A Sbjct: 665 RLWRGLPPFSRTRDLNEVLAFYA 687 >UniRef50_Q1NJC5 Helicase c2 n=2 Tax=delta proteobacterium MLMS-1 RepID=Q1NJC5_9DELT Length = 698 Score = 553 bits (1425), Expect = e-156, Method: Composition-based stats. Identities = 229/666 (34%), Positives = 345/666 (51%), Gaps = 32/666 (4%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQ--------------------P 40 M + FA G LA+ +P ++PRE Q MA AV ++ Sbjct: 33 MGEIFAVGGLLARYLPDYEPREGQLSMAQAVAATLDPETAEELPPPETSGPERAPHPTPR 92 Query: 41 LVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALL 100 L+VEAGTGTGKT AYL PA+ + ++V++ST + LQ+Q+ ++++P + + L + Sbjct: 93 LLVEAGTGTGKTLAYLVPAVLSGRRVVVSTNTINLQEQILAKEIPFIQRYLAPWLQAMCV 152 Query: 101 KGRSNYLCLERLEQQALAGGDLP----VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQ 156 KGR NYLCL R Q Q + + L W +T GD + +A+DS Sbjct: 153 KGRGNYLCLRRWHQFLAKHRQGQLFTGNQGGAQLEQLAGWVEETDSGDKAELSELADDSP 212 Query: 157 AWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI 216 W + + +CLGS CP +CF+ R+KA A +++VNHHLF +D+ V+ G E++ Sbjct: 213 LWASLNAAGGHCLGSSCPHGAECFITTLRRKAARAHLLIVNHHLFFSDLAVRRFGHAEVL 272 Query: 217 PEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELK--DTQQLQKCADR 274 P + ++FDEAH L +IA+++FG SLS QLLDL +D+ L+ D +L + A Sbjct: 273 PRYEAVVFDEAHHLENIATRHFGLSLSHYQLLDLVRDLESMAEERLRENDRARLLQHARA 332 Query: 275 LAQSAQDFRLQLGEPGYRGNLRELLAN-PQIQRAFLLLDDTLELCYDVAKLSLGRSALLD 333 L A R L LLA P L + + + + Sbjct: 333 LGVEADRLNHFFPASRGRFPLPPLLAEHPDWPGLLEDLRGDFRALAGDLEGLAQLAEIWN 392 Query: 334 AAFERATLYRTRLKRLKEINQPG---YSYWYECTSRHFTLALTPLSVADKFKELMAQKPG 390 R L+ + + + YWYE + + +P+ +A +E + + Sbjct: 393 PPLRRVRELADTLEAICQPPEDDAGNDIYWYERLEKTVFIGRSPIDIAPHLREHLHNQVK 452 Query: 391 SWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCVLRN-LPQTNQPGS 448 + +FTSATL D + +RLG+ + L L +PFDY+ + LL V +P G Sbjct: 453 ATVFTSATLRTGKDFRYVKNRLGLPADSPELALETPFDYAGRTLLYVPSQEMPPPGASGH 512 Query: 449 ARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV 508 ++R +++ + GR +L TS MR A + T+ P+L+QG+ + LL+QF Sbjct: 513 PEASRRLMRELVQCSRGRALLLFTSLGAMRQAAAELAGTLPYPLLIQGDAPRQLLLEQFR 572 Query: 509 SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEV 568 ++L+A +SFWEGVDV G++LS VIIDKLPF P DP++ AR+E + GG+PF + Sbjct: 573 RRTGSVLLAVASFWEGVDVPGESLSCVIIDKLPFEVPSDPVIMARVEKIKKDGGNPFFDF 632 Query: 569 QLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVR 628 Q+P AV+ L+QGVGRL+R DRGVL I D RL + YG FL SLPP+P R++AR Sbjct: 633 QVPRAVLMLRQGVGRLLRSTADRGVLAILDGRLFSKSYGRIFLQSLPPSPVCRELARVRE 692 Query: 629 FLAIPS 634 F A S Sbjct: 693 FFADES 698 >UniRef50_D0LRT5 Helicase c2 n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRT5_HALO1 Length = 729 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 235/693 (33%), Positives = 355/693 (51%), Gaps = 63/693 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + P G L P ++ R QR MA AV +A+ L+VEAGTGTGKT AYL PAL Sbjct: 13 VERVLGPSGILRACTPHYEDRPEQRHMAHAVAEALAHQGALLVEAGTGTGKTLAYLVPAL 72 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + K+V+ISTG++ALQDQ+ D+P + + L LKG SNY+C+ +L + Sbjct: 73 LSGKRVVISTGTRALQDQITRNDIPLLEEILPRQFTAVTLKGVSNYVCVRKLWDVSARLA 132 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 P + D + W+ + GD + +VA+D+ W +T+T D +G CP ++ CF Sbjct: 133 MAP-EARRDYQTVAEWARDSPTGDRAELTAVADDAPIWAALTNTPDTRIGPRCPFFEQCF 191 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESG-FGELIPEADVMIFDEAHQLPDIASQYFG 239 + +AR++A AD+++VNHHLF AD+ ++ S ++PE + ++FDEAHQL D+ +++FG Sbjct: 192 ITRARRRAEKADLIIVNHHLFFADLSLRSSYPGARVLPEYEAVVFDEAHQLEDVMTEHFG 251 Query: 240 QSLSSRQLLDLAKDITIAY----------------------------RTELKDTQQLQKC 271 +S+ +L LA+D + R T+++ Sbjct: 252 VQVSTVRLAQLARDARHSSAGRNGPLFPNAQSSEKASDDDDSPKPSTRPMETSTERIIAH 311 Query: 272 ADRLAQSA-----QDFRLQLGEPGYRGNLRE-LLANPQIQRAFLLLDDTLELC------- 318 +R A+ R G R L + L A+ Q A+ LD L+ Sbjct: 312 LERCAEGFFISVRAALRESPAGDGGRVPLDDSLFADSDRQEAWFRLDSALDELAAHATLR 371 Query: 319 -----------------YDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 D + R+ L A RA + R L L E ++ + YW Sbjct: 372 ADELASDSAEAAAYAIGEDNPGNADERAEALAAVAVRAEMLRGDLALLAERSERAFVYWG 431 Query: 362 ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AES 419 E + L P+ V+ ++ + + IFTSATL + RLG++ A+ Sbjct: 432 EARATSVGLCAAPVDVSAYLRKYLLPIAPAAIFTSATLRAAGSFDYLRQRLGLDSEIADE 491 Query: 420 LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 L +PSPFDY+RQA+L + R+LP G A + + GR F+L TSH +R+ Sbjct: 492 LAVPSPFDYARQAILYLPRDLPDPRDAGFTAAACARVVELCAITGGRAFVLFTSHRALRE 551 Query: 480 LAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDK 539 A + T+ VL+QG+ + L++QF + A+L+ T +FWEGVDV GD LSLVI+DK Sbjct: 552 AARRLLGTLPHEVLVQGQMPRAALVEQFRARPGAVLLGTGTFWEGVDVPGDALSLVIVDK 611 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LPF DPL++AR++ RGG PF+ Q+P A + LKQG GRLIR +DDRG++ + D Sbjct: 612 LPFAPHTDPLVRARVQRIESRGGAPFEGYQVPQAALALKQGFGRLIRRSDDRGIVAVLDP 671 Query: 600 RLVMRPYGATFLASLP-PAPRTRDIARAVRFLA 631 R+V R YG FL +LP RT + + R+ Sbjct: 672 RIVTRRYGRAFLDTLPADITRTSVLEQVRRWWQ 704 >UniRef50_C7I1U8 Helicase c2 n=1 Tax=Thiomonas intermedia K12 RepID=C7I1U8_THIIN Length = 676 Score = 551 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 252/653 (38%), Positives = 350/653 (53%), Gaps = 24/653 (3%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 F+P L + +P + RE QR++A+AV AI L+ EAGTGTGKT AYL PAL Sbjct: 24 DALFSPGSPLQEELPQWSVREGQRELAMAVAGAIADRAILMAEAGTGTGKTLAYLVPALL 83 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 +VIIST ++ LQDQLY++DLP +AL + +LKGRSNY+CL RL++ A Sbjct: 84 HGGRVIISTATRNLQDQLYNKDLPAARRALGAAVSTCVLKGRSNYVCLYRLQRAAEWVHG 143 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 + + ++ GD+S + E+S LVTST DNCLG+DCP YK CFV Sbjct: 144 RHAHA--QLRRITQFAKSDARGDLSALSGLEENSALNFLVTSTTDNCLGADCPDYKACFV 201 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS 241 +KAR++A+ +DVV++NHHLF AD+ ++ G EL+P AD +I DEAHQL +I Q+ G Sbjct: 202 MKARREALASDVVIINHHLFFADLALRGEGVAELLPTADTLILDEAHQLAEIGVQFLGAR 261 Query: 242 LSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLAN 301 + Q++DL++D+ K Q + L ++A+D RL + R + ++L Sbjct: 262 CGTAQVVDLSRDVLAGGLQHAKGLADWQTLSGALERAARDLRLAAPQNPGRLSQPQVLDL 321 Query: 302 PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGY---- 357 P A L L +V + +A + +R T + P Sbjct: 322 PGWDVALHDLQAQLAHTAEVLSAHVEAAAEFERLMDRCTALHQAFSSWQAAPDPDQTDAP 381 Query: 358 --SYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI- 414 W + S H L PLS+A F L+AQ+ +WIFTSATLSV H + LG+ Sbjct: 382 PQVRWADVGSAHLRLQAAPLSIAPAFAALVAQRSQAWIFTSATLSVGGSFRHARAALGLT 441 Query: 415 --------------EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPII 460 + L + SPFDY+ Q L V ++LP NQPG + + A+ + Sbjct: 442 SEQGGCAPVEGGVAPRCRELRVASPFDYAEQGRLLVPQDLPLPNQPGHSESVGALAAQLA 501 Query: 461 EANNGRCFMLCTSHAMMRDLAEQFRATMT-LPVLLQGETSKGQLLQQFVSAGNALLVATS 519 N G F+L T+ + +A+ RA + VL Q + SK LL +F S A+LV + Sbjct: 502 TGNTGGTFVLTTTLRAAKIIAQTLRALLPGRAVLEQFDESKAALLARFASTSQAVLVGSQ 561 Query: 520 SFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQ 579 SFWEGVD+ GD L+LVIIDKLPF PDDPL AR++ G F + +P A ++L+Q Sbjct: 562 SFWEGVDLPGDRLTLVIIDKLPFAPPDDPLTAARLKQIEAEGRSGFADYSMPQAALSLQQ 621 Query: 580 GVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAI 632 G GRLIR DRGVLV+CD RL +G L SLPP R A A FL Sbjct: 622 GAGRLIRTESDRGVLVVCDRRLTATGWGRQLLTSLPPFTRVSQTAEAQAFLQG 674 >UniRef50_Q6AMF2 Related to ATP-dependent helicase n=2 Tax=Proteobacteria RepID=Q6AMF2_DESPS Length = 776 Score = 550 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 225/657 (34%), Positives = 350/657 (53%), Gaps = 23/657 (3%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKG------------QPLVVEAGTG 48 + D F +G+LA I ++PR Q++MA AV++++ + LVVEA TG Sbjct: 120 LEDFFGENGRLAGLIDHYQPRSGQQEMAQAVSRSLMDSNDPDPHAVSAPPRVLVVEAETG 179 Query: 49 TGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLC 108 GKT AYL PA+ + K+V++ST ++ LQDQ+ +++P + K + +KGR NYLC Sbjct: 180 IGKTLAYLLPAVISGKRVVVSTATRNLQDQIIHKEIPLLEKMFGGRVSAQCVKGRQNYLC 239 Query: 109 LERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC 168 L + Q + L + D + W TV GD + +A+D+ W ++S +D C Sbjct: 240 LYKWYQH-RSSAQLSLIAQDDEDKIEQWLASTVTGDRAELHWLADDASLWHKISSQSDQC 298 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAH 228 LGS+CP ++CF+ + R++A A +++VNHHLF +D+ +K+ G+GE++P +IFDEAH Sbjct: 299 LGSECPEQENCFISRLRRRAAAARILIVNHHLFFSDLALKKEGYGEILPRYQAVIFDEAH 358 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTEL--KDTQQLQKCADRLAQSAQDFRLQL 286 L DIA+ +F +S SS QL D+ D L + + L + F Sbjct: 359 HLEDIATTFFAKSFSSYQLRDILSDAERLGDKILVSDEHKNLLSRLSGMRVRLNAFMHVF 418 Query: 287 GEPGYRGNLRELLAN---PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYR 343 + + L+EL+ Q+ LL + + R Sbjct: 419 PKKRGKTALKELVTEYGQEAWQQEVELLATGIAKLIVALTDLHFKGEGWQTLVRRCQECH 478 Query: 344 TRLKR---LKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLS 400 L+ ++ Y +W+E + L++TP+SVA + E + S I TSATLS Sbjct: 479 DNLRLTGLARDTTSSNYVHWFEHREKSIVLSVTPISVAKELNEFLYAGVESTIMTSATLS 538 Query: 401 VNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCVLRN-LPQTNQPGSARQLAAMLRP 458 + + + RLG+ + L SPF Y QALL + P+TN P ++ + Sbjct: 539 IGEKFDYLRERLGLPADTKYLRFASPFAYKEQALLYIPEGGFPETNAPDYGQKSCERILQ 598 Query: 459 IIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVAT 518 I+E + GR +L TS + M A + +L+QG S+ LL++F + +++L+A Sbjct: 599 ILEQSRGRALILFTSFSAMERAATWLTDKIDYRMLVQGRHSRKHLLEEFKADRDSVLLAV 658 Query: 519 SSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLK 578 +SFWEG+DV G+ LS VIIDKLPF P DP+++ARME + GG+PF + Q+P AV+TL+ Sbjct: 659 ASFWEGIDVAGEALSCVIIDKLPFEVPTDPVIQARMEYIKAAGGNPFMDFQVPRAVLTLR 718 Query: 579 QGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 QGVGRL+R DRG++ I D RL + YG FL SLPPAP TR + +F + + Sbjct: 719 QGVGRLMRSDRDRGLITILDIRLFSKFYGKRFLRSLPPAPVTRSLDEVKKFFSTEKT 775 >UniRef50_C6NRY2 DinG family ATP-dependent helicase YoaA n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NRY2_9GAMM Length = 646 Score = 550 bits (1416), Expect = e-155, Method: Composition-based stats. Identities = 257/638 (40%), Positives = 361/638 (56%), Gaps = 10/638 (1%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK 63 D L + +P F R Q++MA V + +G +VEAGTGTGK++AYL PAL + Sbjct: 10 ALGADSPLRRILPHFHVRRQQQEMAAQVAGWLAEGGVGLVEAGTGTGKSFAYLLPALLCE 69 Query: 64 KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP 123 +KV+IST S+ALQDQ+ +D+P +++A V LKGRSNYLC RL++ G + Sbjct: 70 RKVLISTASRALQDQILDKDIPVLAQAWSSPRRVVRLKGRSNYLCPFRLQRALAEG--VA 127 Query: 124 VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVK 183 ++ D++++ W+ +T +GDI+ ++ E S WPLVTST DNCLGSDCP + C V+ Sbjct: 128 PRLARDLLVVADWAGRTGEGDIAELSALPESSPVWPLVTSTRDNCLGSDCPEFARCPVIA 187 Query: 184 ARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLS 243 ARK+A++ADVVVVNHHL LAD+ ++ G+L+P D +I DEAHQL D+A QYFGQ LS Sbjct: 188 ARKRALEADVVVVNHHLLLADLALRVESRGDLLPRVDAVIIDEAHQLADLAGQYFGQHLS 247 Query: 244 SRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQ 303 S QLL+ A+D A +D +L A RL Q + + Q + + E + P Sbjct: 248 SHQLLEWARDSRQALLAAARDDAELGLPA-RLEQHIEHWLAQGQQLPGGESRWEWPSFPV 306 Query: 304 --IQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEI-NQPGYSYW 360 + + + + S L+ R L+ + ++P W Sbjct: 307 QVLTASLRQVASEAAQLESTLQSLREFSKELEQCAGRGEQLTGLLEFFLKPESEPSAVRW 366 Query: 361 YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI----EQ 416 E R L +P+ + + + + + I SATL V D +RLG+ Sbjct: 367 LERRGRGLLLHASPIDLGPLLRGELFARNATTILVSATLRVGGDFGALEARLGLVEGEPS 426 Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 + + SPFDY+ QALL + +P+ P P+IEA+ GRCF L TSH Sbjct: 427 PQHFVADSPFDYTCQALLYLPPQMPEPASPQFTAACIEAAIPVIEASGGRCFFLFTSHRA 486 Query: 477 MRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 +R+ A + + P+L+QG + +LL F AGNA+L+ +SFWEGVDV+G+TLS VI Sbjct: 487 LREAAVELPQRLDFPILVQGSMPRARLLDAFRRAGNAVLLGAASFWEGVDVQGETLSCVI 546 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 IDKLPF +P DP+L+A C GGDPF ++QLP AVI L+QGVGRLIR DRGVL I Sbjct: 547 IDKLPFANPGDPVLRAHHRHCAAMGGDPFRDLQLPQAVIALRQGVGRLIRSESDRGVLTI 606 Query: 597 CDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPS 634 CD RL+ + YG FL SLPP P +DIA F + Sbjct: 607 CDPRLLNKGYGRIFLRSLPPIPVVQDIAAVREFWRGGA 644 >UniRef50_C8N856 ATP-dependent helicase n=1 Tax=Cardiobacterium hominis ATCC 15826 RepID=C8N856_9GAMM Length = 662 Score = 549 bits (1415), Expect = e-155, Method: Composition-based stats. Identities = 247/657 (37%), Positives = 345/657 (52%), Gaps = 24/657 (3%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + FA DG LA+A+ ++PR Q+++A AV + L+ EAGTGTGKT+AYL P L Sbjct: 4 IKALFAADGALAQAVRDYQPRPGQQELAEAVADNLSDDGILLAEAGTGTGKTFAYLLPLL 63 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + KK ++ST ++ LQ+Q++++DLP V K L+ T VALLKGR NYLC Q + Sbjct: 64 ASGKKGLVSTATRNLQEQIFTKDLPLVRKVLRSTARVALLKGRRNYLCHHHYHQYLDSEP 123 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + + + + ++T DGD+ + ED+ +TST +NCLG DC +++CF Sbjct: 124 H-TAEEKAWRRAIERFFDKTADGDLVALTEIPEDAPVLARITSTAENCLGRDCAFFEECF 182 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 V +AR+KA +ADV ++NHHL LAD +K GF E++P+ + DEAH LP A + G Sbjct: 183 VQQARQKAKEADVTIINHHLLLADFALKSEGFAEILPDIQAFVIDEAHHLPLTAIHFLGD 242 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLA-QSAQDFRLQLGEPGYRGNLRELL 299 LS+RQLL D A E D +L++ L Q ++ R + +L Sbjct: 243 RLSARQLLGFISDGEAAALAEAPDALELRETLRELKLQHSKILLAVRQPTETRLDEEQLF 302 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQP---- 355 A+ L EL + R LL R + L ++ Sbjct: 303 AHRAFWTELQALAALFELLHIQLAPQKARGKLLAHLDGRCQDLQKLLAAFLAEDRAALPA 362 Query: 356 -----------------GYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSAT 398 + W + RH+TL P++ A +F +A SW F SAT Sbjct: 363 ATEKTGNDAENNDKPPVPRAIWLDVGPRHYTLCSVPVNAAGRFASWIANSNASWAFLSAT 422 Query: 399 LSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRP 458 L+VN HF+ LG+ + S+ L SPFD+ QALL LP N L + + P Sbjct: 423 LAVNGKFDHFSRELGLSEYRSIQLQSPFDFRHQALLYHPPGLPDPNDARYNDALISAILP 482 Query: 459 IIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVAT 518 ++E + GR F+L TS+ + R T +L+QG K LL F A+L+AT Sbjct: 483 VLERSRGRAFLLFTSYKALHAAERALRDT-DYHLLVQGRAGKNILLADFRRHERAVLLAT 541 Query: 519 SSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLK 578 SSFWEGVDVRGD L V+IDKLPF +P+DP+ +AR +G PF LP A+ITLK Sbjct: 542 SSFWEGVDVRGDRLVCVVIDKLPFAAPNDPVTRARHRLLEDKGLSPFMHDTLPQAIITLK 601 Query: 579 QGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 QGVGRLIRD+ D GVLV+ D RL + YG TFL SLPP +TR I RF A + Sbjct: 602 QGVGRLIRDSGDYGVLVLADPRLTQKNYGQTFLNSLPPMSKTRKIEVIDRFFAYHET 658 >UniRef50_C8R1Z3 Helicase c2 n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R1Z3_9DELT Length = 707 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 234/706 (33%), Positives = 358/706 (50%), Gaps = 72/706 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEK-----------------GQPLVV 43 M + FA G L++ +PGF+PRE Q MA AV + G+ ++ Sbjct: 1 MEEIFAAGGLLSRELPGFEPREGQLAMARAVAATLNGNEPSPGGAPEQPAAAHGGRLVLA 60 Query: 44 EAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGR 103 EAGTGTGKT AYL PA+ + +KV+IST + LQ+Q+ ++++P + + L +KGR Sbjct: 61 EAGTGTGKTLAYLVPAVLSGRKVVISTNTINLQEQILAKEIPFIRRHLAPGLKALCVKGR 120 Query: 104 SNYLCLERLEQQALAG------GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQA 157 NYLCL R Q + + Q ++ + +W N+T GD +A+DS Sbjct: 121 QNYLCLYRWHQLQINPQGRLFSKGVSDQDEQNLETIAAWLNETGTGDRGELRGLADDSPL 180 Query: 158 WPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIP 217 W +++ +CLGS CP DCF+ + R++A + +++VNHHLF +D+ V+ G E++P Sbjct: 181 WAGISAAAGHCLGSSCPHGADCFITRLRQRAARSQLLIVNHHLFFSDLAVRRFGHAEVLP 240 Query: 218 EADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELK--DTQQLQKCADRL 275 + +IFDEAH L +IA+++FG +LS Q++DL +D+ L+ D + + L Sbjct: 241 RYEAVIFDEAHHLENIATRHFGLALSHYQIIDLVRDLEGMAEARLRERDRAGVVQAVRAL 300 Query: 276 AQSAQDFRLQLGEPGYRGNLRELLA-NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA 334 A A F R LREL+A P+ L+ + G + Sbjct: 301 AAEASLFLDFFPARRGRFPLRELIAAEPRWPELCSTLETAFAAVIRPLEKLAGCEEIWGP 360 Query: 335 AFERATLYRTRLKRLKEINQ---------------------------------------- 354 R K + Q Sbjct: 361 VLRRCQDLLATFKTITSPPQLAVPSVGAAPGGHDAMPQPPRDADGLATTAETPGRPSPPA 420 Query: 355 ----PGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTS 410 YWYE + LA++P+ VA +E + ++ + +FTSATL +D + + Sbjct: 421 PVAADSAIYWYERREKTVQLAVSPIDVAGHLQEHLYRQVKAAVFTSATLRTGNDFRYVKA 480 Query: 411 RLGIE-QAESLLLPSPFDYSRQALLCVLR-NLPQTNQPGSARQLAAMLRPIIEANNGRCF 468 RLG+ +L L +PFDY+ + LL V + P N+ + ++R II + GR Sbjct: 481 RLGLPADCPALDLATPFDYAGRTLLYVPDQDFPAPNEAAYPARARQLMREIIGHSRGRAL 540 Query: 469 MLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 +L TS M A + + PVL+QGE + LL++F S ++L+A +SFWEGVDV Sbjct: 541 LLFTSVNAMHQAAAELAGKVPYPVLVQGEAPRSALLEEFRSRTRSVLLAVASFWEGVDVP 600 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 G++LS VIIDKLPF P DP++ AR++ R GG+PF + Q+P AV+TL+QGVGRL+R Sbjct: 601 GESLSCVIIDKLPFEVPSDPVIMARVDKIRAEGGNPFFDFQVPRAVLTLRQGVGRLLRSN 660 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPS 634 D+GVL I D RL + YG TFL SLPP+P +R++A +F + Sbjct: 661 ADQGVLAILDVRLFSKGYGRTFLKSLPPSPLSRELAAVKKFFSREK 706 >UniRef50_D1AJB0 Helicase c2 n=5 Tax=Fusobacteriaceae RepID=D1AJB0_SEBTE Length = 832 Score = 533 bits (1373), Expect = e-150, Method: Composition-based stats. Identities = 194/688 (28%), Positives = 315/688 (45%), Gaps = 69/688 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + F G + K P F+ R+ Q +M+ + +++ + + ++EAGTGTGKT AYL P Sbjct: 119 IDKYFGDLGIIRKKYPDFEIRDEQYKMSKDIEKSLNENKKALIEAGTGTGKTLAYLIPTL 178 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 AL K IIST + LQ+QL ++D+P V + + L+KGR NYLC +L+ Sbjct: 179 EYALENNLKAIISTNTINLQEQLINKDIPLVKELIGQDFKYTLVKGRGNYLCKRKLQNAI 238 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 + D + ++ L+ W+ T GD + + W V D C CP + Sbjct: 239 MEESD-DSEDKEILLNLQKWNETTKYGDRNELRYGI-SFEIWEKVNCELDLCTNVKCPYF 296 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGF----GELIPEADVMIFDEAHQLPD 232 C+ ARK+ +D++V+NHH+F AD+ ++ ++P D++IFDEAH + D Sbjct: 297 SSCYFFNARKEIGKSDLLVLNHHMFFADLSIRSEIGFNTDYSILPNYDILIFDEAHNIED 356 Query: 233 IASQYFGQSLSSRQLLDL------------------------AKDITIAYRTELKD---- 264 A YF +S L KD E+ D Sbjct: 357 TARSYFTSEVSKYSFGKLMGNIYNKRVRNYNKSGIFVRALIYLKDNLSEEEYEIIDKVKE 416 Query: 265 ---TQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFL------------ 309 + L K D++ + F L + + +++ I+ + L Sbjct: 417 EEIIENLNKYYDKIIEIFDRFLLGFSKDSEQMEIKKRFDKDYIKSSSLWKEIMKLRKESV 476 Query: 310 -----LLDDTLELCYDVAKLSLGRSA----LLDAAFERATLYRTRLKRLKEINQPGYSYW 360 ++ +L ++ K L ER ++ L + + +Q + YW Sbjct: 477 HLYSIMIKGLTKLTNEIDKFRLEDENGIIFDFKKYIERVKVFMKDLLYILDSDQEDHVYW 536 Query: 361 --YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-- 416 + TP VAD + + K +FTSATL+V ++ +G+E+ Sbjct: 537 TNINLRKGSIRIYATPFEVADDLEHNLFNKMDRILFTSATLAVEQKFDYYKKNIGLEKKG 596 Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 ++ SPFDY +Q + + + N + ++ ++ GRCF+L TS++ Sbjct: 597 IIEEIIDSPFDYEKQMKVYIPDDTKDPNSLEFFSDVYDFIKKLVINTKGRCFLLFTSYSS 656 Query: 477 MRDLAEQFR---ATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLS 533 + + + R M +L QGE + ++++ F A+L T SFWEG+DV+GD+L Sbjct: 657 LNFIYNKIRGELEKMGYTLLKQGELPRHEMIELFKIRDKAILFGTDSFWEGIDVQGDSLK 716 Query: 534 LVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGV 593 V+I KLPF SP+DP+ +A +E R +PF Q+P AVI KQGVGRLIR D G+ Sbjct: 717 SVVIVKLPFKSPEDPVTEAIIEYMRKNNQNPFMNYQIPQAVIKFKQGVGRLIRSKTDTGI 776 Query: 594 LVICDNRLVMRPYGATFLASLPPAPRTR 621 + I DNR++ + YG FL SLP R Sbjct: 777 VTILDNRVIKKAYGEKFLKSLPKTSIIR 804 >UniRef50_A6C6H8 ATP-dependent helicase, DinG family protein n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C6H8_9PLAN Length = 666 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 220/659 (33%), Positives = 333/659 (50%), Gaps = 36/659 (5%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + DG++A+ + ++ R Q +MA AV +AI++ Q L+VEAGTG GK++AYL PA+ Sbjct: 9 VLSILGSDGKIAQRLEKYEHRPEQLEMAEAVAKAIDQKQHLLVEAGTGVGKSFAYLVPAI 68 Query: 61 ------------RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLC 108 + +K++I+ST + +LQ+QL RD+P ++ L + L+KGRSNY+ Sbjct: 69 LATCKQNETRSGKDRKRLIVSTNTISLQEQLIHRDIPFLNAVLPVEFSAVLVKGRSNYIS 128 Query: 109 LERLEQQALAGGDL--PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 L RL+ G + LS + + WS++T DG + + W + S + Sbjct: 129 LRRLKGAVERAGSTFSKEEELSQLDQIVQWSHKTTDGSRADL-EFRPIPKIWDEIQSEHG 187 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDE 226 NCLG C Y DCF +AR++ +ADV+VVNH LF +D+ ++ G ++P+ D +I DE Sbjct: 188 NCLGKRCATYNDCFYYRARRRVWNADVLVVNHALFFSDLAIRREG-SSILPDYDTVILDE 246 Query: 227 AHQLPDIASQYFGQSLSSRQLL----DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDF 282 AH + +A + G S+++ Q L D T + Q+ RL +D Sbjct: 247 AHTIEAVAGDHLGLSITNSQFDYLFNKLYNDRTQKGLLLHHNLVDCQQHVTRLRFMVEDL 306 Query: 283 RLQLGEPGYRG-----NLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFE 337 L E +R+L + L Y + L AA E Sbjct: 307 FDHLLEWQDSSGLANRRIRQLPPIENCVSQEMRLLAARIAEYAFTLKNEEEKIELSAAAE 366 Query: 338 RATLYRTRL-KRLKEINQPGYSYWYECTS---RHFTLALTPLSVADKFKELMAQKPGSWI 393 R T L L + + YW E T + + P+ V ++ + + + I Sbjct: 367 RCTALGDSLNSWLTQQAEADSVYWVEATRGRHQRVKMVNAPVDVGPVLRDELFNQAQTVI 426 Query: 394 FTSATLSVND-DLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQ--PGSAR 450 TSATL+V D D SRLG+ Q+E L L SPF+Y Q L + +P + Sbjct: 427 LTSATLAVGDQDFSFTRSRLGLTQSEELKLGSPFNYQEQVRLILPAAMPDPGENPAAYEA 486 Query: 451 QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQ---FRATMTLPVLLQGET-SKGQLLQQ 506 +A L+ IE +G F L TS+ MM+ A++ + + L + LQG+ + +L++ Sbjct: 487 AVAEKLKQYIEQTDGHAFALFTSYKMMQQCADRISGWLSEHNLALYLQGDGLPRSLMLER 546 Query: 507 FVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD 566 F + +L T SFW+G+DV GD L+ VII KLPF+ PD PLL+AR+E R RGG+PF Sbjct: 547 FRNNPRGVLFGTDSFWQGIDVPGDALTNVIITKLPFSVPDHPLLEARVEAIRNRGGNPFM 606 Query: 567 EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIAR 625 + Q+P+A+I LKQG GRLIR A D G +VI D R+ + YG FL SLP D Sbjct: 607 DYQIPEAIIKLKQGFGRLIRTASDYGQVVILDPRVRTKRYGEKFLESLPDCTLIIDEQD 665 >UniRef50_Q0F3T0 ATP-dependent helicase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3T0_9PROT Length = 620 Score = 530 bits (1364), Expect = e-149, Method: Composition-based stats. Identities = 223/636 (35%), Positives = 342/636 (53%), Gaps = 24/636 (3%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 ++ DF G L + +PG+ RE Q ++A + I G L+ EA TGTGKT AYL PAL Sbjct: 8 VSRDFERGGLLDEQLPGYGRREEQIKLAGEIAGCIVSGSRLLAEAETGTGKTLAYLIPAL 67 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 R+ KV+IST +++LQDQL RDLP V KAL VALLKGRSNYLC +RL+ + Sbjct: 68 RSSDKVLISTHTRSLQDQLVHRDLPAVQKALGAKRRVALLKGRSNYLCPQRLKTHI-SSP 126 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + + ++ + WS +T DGD++ ++T+T D C GS C ++ C Sbjct: 127 QVELWAQKTMLKVLDWSRKTQDGDLAALPFDPFAKGIGAMITATADQCAGSKCAEFEHCP 186 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 ++KAR+KA AD+VV NH L LAD +K FGE++P DV + DEAH LP +A Q+FG Sbjct: 187 LMKARQKAQGADIVVTNHSLLLADAALKSGDFGEVLPAFDVYVLDEAHSLPQLAGQHFGI 246 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 L+ + D+ + + ++ ++ Sbjct: 247 QLTRMNFIQWLNDMQAELEAMGDEPALKKDIVEQ---------------------GRVVL 285 Query: 301 NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 ++ L++ ++ L RS L ERA + +K+ G+ W Sbjct: 286 EAWLESGLEALEEAWGDMLKLSDLRRERSEPLTRLAERAEQLAEEIAMVKKPGD-GFVGW 344 Query: 361 YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL 420 E + P+ + + + ++I SATL V+ + +RLG+ AE Sbjct: 345 SEGEGELTRYTVAPVETGPVLAKHLWSRQAAFILLSATLRVSGSFDYARNRLGLADAEEC 404 Query: 421 LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL 480 PSPFDY++QA++ + R++P + PG+ + + ++ A+ GR F+L T+ +M++ + Sbjct: 405 FHPSPFDYAQQAMIYLPRHMPDSRSPGAVATMTDEIETLLRASRGRAFVLFTAWSMLKQV 464 Query: 481 AEQFRATMTLPVLLQGE-TSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDK 539 A + + VL+QGE S+ +L F + +++L T SFWEGVDV G++LS+VIIDK Sbjct: 465 APELARRLPWDVLIQGESGSRDAILDAFRADTHSVLCGTRSFWEGVDVPGESLSMVIIDK 524 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 +PF P+DPLL+AR+ C +GG F ++QLP+A+ TL+QG GRLIR DDRGV+ + D+ Sbjct: 525 MPFAPPNDPLLQARIRRCEEQGGSGFRDIQLPEAIATLRQGAGRLIRSEDDRGVMALLDS 584 Query: 600 RLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 RL + YG + +LPPAP D+A F S Sbjct: 585 RLYHKAYGREAVHNLPPAPIRDDLADVRWFFEEASE 620 >UniRef50_A5EVG8 Helicase domain protein n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVG8_DICNV Length = 645 Score = 528 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 239/643 (37%), Positives = 329/643 (51%), Gaps = 12/643 (1%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + F+ G L+ A+ G++ R+ Q +A + + IE+ L EAGTG GKT+AYL P L Sbjct: 4 LDSFFSEQGALSSALKGYQVRKEQVHLAETIARQIERKSVLCAEAGTGIGKTFAYLFPLL 63 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + KK +IST +K LQ+Q++ D+P V K L + +ALLKGR NYLC ER E A Sbjct: 64 LSAKKALISTATKTLQEQIFYHDIPFVQKILGNSRKIALLKGRRNYLCYERYEHLAHKPP 123 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 Q L+ ++ ++ DGD++ + E+ V+ T + CL +DCP + CF Sbjct: 124 Q-NAQEQKYRQLIDDFAVRSKDGDLAQL-DIPENHDILRAVSCTAEQCLNADCPFFAQCF 181 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 V KAR+KA DAD++VVNH+L LAD+V+K GF E++PE + I DEAH LP I + G Sbjct: 182 VQKARQKAKDADLIVVNHYLLLADLVLKNDGFAEILPEIETFIIDEAHHLPTITRHFSGI 241 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRG-NLRELL 299 +LS RQ K+ A D L+ Q F L R + +L Sbjct: 242 TLSQRQCHLWLKEFDEAVIEHAPDALTLRHAIKTAQNVMQQFPSSLQIYDERILEMPDLQ 301 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGY-- 357 A+ L + L R+A+L R L + Sbjct: 302 AHHDFWEIIAAWQQALMKLLSALQPQLPRAAVLHTFERRLETALNSLDEFLALKDANESS 361 Query: 358 -----SYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL 412 + W E ++H L P++ A +F + + +W F SATL++N HF L Sbjct: 362 PETPEAKWVEVRAQHLVLNRVPVNAALQFGTWIERSDAAWCFLSATLTINQSFTHFCHEL 421 Query: 413 GIEQ-AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLC 471 G+ E+L SPFDY +QAL+ LP N P A + PI+ + GR F+L Sbjct: 422 GLNASVETLYCASPFDYPKQALMYQPPQLPNPNHPQYTESFIAAVLPILRRSQGRSFLLF 481 Query: 472 TSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDT 531 TS+ + +AE+ A + +QG K +LL F NALL+AT+SFWEGVDVRG Sbjct: 482 TSYRAL-KIAEKLLANEEFALFVQGSAPKTKLLADFCQTPNALLLATASFWEGVDVRGKQ 540 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 L V+IDKLPF +PDDP+ + R +G PF LP AVI+LKQGVGRLIRD D Sbjct: 541 LVCVMIDKLPFAAPDDPVSRERHRLLEEQGLSPFMYDTLPQAVISLKQGVGRLIRDQKDY 600 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPS 634 GVLVI D RL + YG FL SLP RT + RF Sbjct: 601 GVLVIGDPRLRQKSYGKIFLESLPRMTRTSKLDIVYRFFNYHE 643 >UniRef50_B2A1E9 Helicase c2 n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A1E9_NATTJ Length = 636 Score = 527 bits (1358), Expect = e-148, Method: Composition-based stats. Identities = 204/624 (32%), Positives = 335/624 (53%), Gaps = 14/624 (2%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR---AKKKVI 67 L I F+ RE Q M++ V +A++ G VVEAGTGTGK+ AYL PA++ + +++ Sbjct: 15 LQHHIDKFETREGQIDMSLGVLKALQDGGHFVVEAGTGTGKSLAYLLPAVQLAQDEFRMV 74 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 IST + ALQ+QL +D+P V K + T V ++KGRSNYLC ++ Q + Sbjct: 75 ISTATIALQEQLLQKDIPLVEKIIGRTLRVEVIKGRSNYLCKQKFNQHFGQTSFVNSIQE 134 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 ++I W N+T GD + ++ E W V S +++CL C Y +CFVVK RK+ Sbjct: 135 RELI---EWVNETETGDRNELQTMPE---IWEKVCSQSESCLAMRCQFYSECFVVKLRKR 188 Query: 188 AMDADVVVVNHHLFLADMVVK--ESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSR 245 A A+++V NHHL+ +D+ ++ G + P+ + +IFDEAH +PD A++ G+ + Sbjct: 189 AETAELLVTNHHLYFSDLNLRIDSDGSMSIFPDYEGVIFDEAHHIPDTATKSLGREVKYS 248 Query: 246 QLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQ 305 +++ L K++T + + + L + A+ A A + E Y LREL + ++ Sbjct: 249 RVIKLFKEVTSYLKQKFQAQVNLVQEAEASAVKAFNKLSDFRESDYL--LRELDSFISLK 306 Query: 306 RAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTS 365 L + + A + R R + L + ++ + Y W S Sbjct: 307 EFRKKLSKLAQHVEECALEEMDRPEQPRMLASRLNKTKLDLDLILDLEEEDYISWVNQQS 366 Query: 366 RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPS 424 +L+ P+ V + +E + I TSATLS+N +F +R+G+ A++ + S Sbjct: 367 SDISLSTNPVFVHKQLREFLFDNVDRIIMTSATLSINGKFAYFKNRVGLSQDAQTYQIES 426 Query: 425 PFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF 484 PF+Y Q+ + + +N P+ RQLA + II+A GR +L TS++ + + Q Sbjct: 427 PFNYQEQSNIYIPKNFPEPRSGEYNRQLADTIEQIIDAAGGRTLVLFTSYSTLNSIYNQL 486 Query: 485 RATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTS 544 + + + QG K ++L F + +++L+AT+SF EGVDV G +L +VI+DKLPF Sbjct: 487 KDKVPYEIYCQGIHPKNKILSWFQNDASSVLMATNSFREGVDVPGSSLQVVIMDKLPFAV 546 Query: 545 PDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMR 604 PD+PL+KA++E + G + F QLP+AV+ +KQG GRLIR +D G+ + D R+ + Sbjct: 547 PDNPLIKAKIEKLQQEGQNSFMNYQLPEAVLAVKQGFGRLIRHNNDCGIFALLDPRVFTK 606 Query: 605 PYGATFLASLPPAPRTRDIARAVR 628 YG F+ SLP AP + + Sbjct: 607 SYGRHFINSLPNAPLISNWSELEA 630 >UniRef50_C9YB00 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YB00_9BURK Length = 667 Score = 526 bits (1355), Expect = e-147, Method: Composition-based stats. Identities = 249/646 (38%), Positives = 354/646 (54%), Gaps = 19/646 (2%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + F+P G LA A+ + PR+ Q+ MA AV I+ G LVVEAGTG GKT+AYL PAL Sbjct: 9 VAEVFSPRGLLAGAVAEYLPRKGQQDMAAAVAGNIQDGGVLVVEAGTGVGKTFAYLVPAL 68 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + +KV++ST +KALQDQL++RD+P + + LK VALLKGRS+Y+CL RL +G Sbjct: 69 LSGQKVLLSTATKALQDQLFTRDIPELLEILKIPVRVALLKGRSSYVCLHRLANARHSGI 128 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 L + + SW T GD+S ++ E Q PLVTST +NC S CP Y++C Sbjct: 129 LQSAAPLRLLGQVESWVTATRTGDVSEVPALEESQQLLPLVTSTRENCTTSKCPRYQECH 188 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 + KAR+ AM ADVVV+NHHLF AD V+ESG EL+P + ++FDEAHQL DI Q+ G+ Sbjct: 189 LYKARRDAMAADVVVINHHLFFADSNVRESGVAELLPTVNAVVFDEAHQLNDIGVQFLGR 248 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPG-------YRG 293 S+ QLL+L +D+ + Q ++L + D +L E ++ Sbjct: 249 QWSTLQLLNLGRDVVFVCLQWARGMANWQLLVEQLEMAVVDMQLVCQESAANTPRLPWQA 308 Query: 294 NLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEIN 353 + E L+ +R L + L A ERA++ + L R Sbjct: 309 LVPEGLSPGLWERRLRRLLQAHATLLQALQGVADAHPELAALAERASVLKDHLDRAALPA 368 Query: 354 QPGYSYWYECTSRHFTLALTPLSVADKFKELM-----AQKPGSWIFTSATLSVNDDLHHF 408 + G W + +R +P+ ++D + + A SW FTSATL DL F Sbjct: 369 EDGLIRWMDNGTR-LRFVESPMDISDAMRSKVTGALEAGSRVSWTFTSATLGPGSDLAWF 427 Query: 409 TSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCF 468 + G+ A L + SPF+Y QA L V +P + P ++AA+ E GR Sbjct: 428 VNSAGLHGANVLKVESPFNYEHQAALYVPGAIPAPSHPNHGTRVAALAAEGAEILGGRTM 487 Query: 469 MLCTSHAMM----RDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAG--NALLVATSSFW 522 +L T+ M + + + + VL+QGE+SK +LL++F +LVA++SFW Sbjct: 488 VLTTTLRAMRLIGETIRKLLPPHLDMAVLVQGESSKRELLERFQQREGLGCVLVASASFW 547 Query: 523 EGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVG 582 EGVD+ G +L L++IDK+PF PDDPLL+AR + GG F+EVQLP A + L+QGVG Sbjct: 548 EGVDIPGRSLLLLLIDKIPFAPPDDPLLQARCKQVDEAGGSSFNEVQLPMAAVALRQGVG 607 Query: 583 RLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVR 628 RLIR DRGVLV+CD RL YG L++LP +D + Sbjct: 608 RLIRRESDRGVLVVCDVRLRSMGYGRKLLSALPVMRIVKDDTQFQA 653 >UniRef50_B1XY97 Helicase c2 n=2 Tax=Burkholderiales Genera incertae sedis RepID=B1XY97_LEPCP Length = 658 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 246/637 (38%), Positives = 348/637 (54%), Gaps = 8/637 (1%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK 63 FA G LA+ F+PRE Q ++A AV A+E+ LV EAGTG GKTYAYL P L + Sbjct: 14 AFAATGVLARTEKQFRPREVQTRLADAVAHALEERSVLVAEAGTGVGKTYAYLVPLLLSG 73 Query: 64 KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP 123 + ++ST +K+LQDQLY RDLP + + L VALLKGR++YLCL RL+ Sbjct: 74 LRALVSTATKSLQDQLYLRDLPRLVQLLGLPVQVALLKGRASYLCLHRLDHARHTAELPD 133 Query: 124 VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVK 183 L + + WS T GD++ + E S PLVTS +NCLGSDCP ++ C +V+ Sbjct: 134 RHSLRVLARVEQWSKTTRSGDLAELEVLDERSPVIPLVTSNRENCLGSDCPQFRQCHLVQ 193 Query: 184 ARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLS 243 AR++AM AD+VVVNHHLF ADM ++++G EL+P D ++FDEAHQL + Q+ G+ + Sbjct: 194 ARREAMQADIVVVNHHLFFADMALRDTGMAELLPSVDAVVFDEAHQLNEAGVQFLGRHIG 253 Query: 244 SRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLG---EPGYRGNLRELLA 300 + QLLD+ +D+ A + Q Q A + Q A+ RL R E Sbjct: 254 TGQLLDIGRDLLAAGLAHARGLQDWQALAGAVEQGARRLRLACAGTLRAAGRLRWDERGL 313 Query: 301 NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 + A D + + L ERA +L + G+ W Sbjct: 314 SEDFVAALTDARAACVAASDALGVVADAAPDLAKLQERAQALAAQLAAFLGPVEHGHVRW 373 Query: 361 YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL 420 + T LA +PL + + +E + + +WIFTSATL + L FT G+E A +L Sbjct: 374 IDLTLHQARLAESPLDIRETLREQIEGERRAWIFTSATLGDDPALSWFTRSAGVEDAHTL 433 Query: 421 LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL 480 SPFDY R A L V P+ ++ ++ + +A GRCF+L T+ ++ + Sbjct: 434 RAGSPFDYGRNARLFVPARFPRPSEATHPAAVSQLAARCAQALGGRCFVLTTTLRALQGI 493 Query: 481 AEQFRATM-----TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 RA + + VL+QGE K L+ +F++ A+LV + SFWEG+DV G L V Sbjct: 494 GADLRARLATLPDPIDVLVQGEAPKRALMARFLATPRAVLVGSHSFWEGIDVPGSALQCV 553 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 +IDKLPF P+DPL +AR +GG PFD+ +P+A + LKQG GRLIR DRG+LV Sbjct: 554 LIDKLPFPPPNDPLAEARCRSLEAQGGKPFDDYFIPEAAVALKQGAGRLIRSETDRGLLV 613 Query: 596 ICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAI 632 ICD RL+ YG + +LPP P D A A+++LA Sbjct: 614 ICDTRLLTMNYGRRLMGALPPMPLVGDEAEALQWLAS 650 >UniRef50_C1ZB20 DNA helicase, Rad3 n=3 Tax=Planctomycetaceae RepID=C1ZB20_PLALI Length = 659 Score = 525 bits (1351), Expect = e-147, Method: Composition-based stats. Identities = 224/657 (34%), Positives = 325/657 (49%), Gaps = 39/657 (5%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 + +G LA+ +P ++ R Q +MA AVT AI G+ LVVEAGTGTGK+YAYL PA+ Sbjct: 6 ENVLGQEGLLARRLPHYEVRGEQLEMARAVTAAIAAGEHLVVEAGTGTGKSYAYLVPAIL 65 Query: 62 A-------------KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLC 108 A K++VIIST + +LQ+QL SRDLP ++ L + L+KGRSNY+ Sbjct: 66 AATANQGSTVDGGAKRRVIISTHTISLQEQLISRDLPLLNSILPVEFSAVLVKGRSNYVS 125 Query: 109 LERLEQQALAGGDL--PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 L RL+ L + V L W+ +T DG +++ Q W V S + Sbjct: 126 LRRLKGALEKSRSLFPTSEAEDQVRSLAGWARETNDGSLASLDFKPL-PQVWDEVRSEHG 184 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDE 226 NCLG +CP Y DC KAR++ +ADV++VNH LF AD+ ++ G ++P+ ++FDE Sbjct: 185 NCLGKNCPTYSDCHYYKARRRVWNADVLIVNHALFCADLALRREG-ASVLPDYQTVVFDE 243 Query: 227 AHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQL 286 AH L +A+ + G +SS Q+ + + + + L + + Sbjct: 244 AHTLEQVAADHLGLGISSGQIEYMLNRLFNEKTQKGLIAGYPLEPQRALITRLKHDVYEF 303 Query: 287 GEPGY---------RGNLRELLANPQIQRA-FLLLDDTLELCYDVAKLSLGRSALLDAAF 336 + G +RE LA L +L K + L +A Sbjct: 304 FDEIRHRVHDHGPANGRVREPLAIENTLSGDLRKLATSLAEYAAKLKQEEEKIE-LVSAS 362 Query: 337 ERATLYRTRLKRLKEINQPGYSYWYECTSRH----FTLALTPLSVADKFKELMAQKPGSW 392 ER + + E + YW E T L +P+ V +E + K + Sbjct: 363 ERLISLAGSISQWVEQGRGDSVYWVETTGAQRNLKVKLCCSPIEVGSVLREELFNKVPTV 422 Query: 393 IFTSATLSVND-DLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQP--GSA 449 I TSATL+V SRLG+ +++SL L SPF+Y Q L + +P Sbjct: 423 ILTSATLAVGQQSFDFIRSRLGLTRSQSLRLGSPFNYREQMKLVLPDGMPDPTDSPADFE 482 Query: 450 RQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA---TMTLPVLLQ-GETSKGQLLQ 505 + ++ + +GR F+L TS+ M++ + + Q GE + Q+L+ Sbjct: 483 FAVCEKIQEYVSQTSGRAFVLFTSYKMLQSCERRLTNWLIRKNFSLYSQSGELPRSQMLE 542 Query: 506 QFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPF 565 +F A+L T SFW+GVDV GD L VII KLPF+ PD PLL+AR+E R RGG+PF Sbjct: 543 RFRKDPAAVLFGTDSFWQGVDVPGDALQNVIITKLPFSVPDHPLLEARVEAIRARGGNPF 602 Query: 566 DEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD 622 E Q+P+A I LKQG GRLIR DRG++VI D R+ +PYG FL SLP Sbjct: 603 MEYQVPEAAIKLKQGFGRLIRTKTDRGMVVILDPRIRTKPYGRVFLESLPECRIVHS 659 >UniRef50_C3WBH3 ATP-dependent helicase DinG n=2 Tax=Fusobacterium RepID=C3WBH3_FUSMR Length = 823 Score = 523 bits (1347), Expect = e-147, Method: Composition-based stats. Identities = 183/679 (26%), Positives = 314/679 (46%), Gaps = 65/679 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + F G L++A GF+ R+ Q MA + + + P++VEAGTGTGKT AYL P Sbjct: 122 IAPYFEKTGLLSQAFKGFEYRDEQLHMATHIEKGLNSETPVIVEAGTGTGKTLAYLIPSI 181 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 A++ KK+V+IST + LQ+QL ++D+P + ++ L+KGR NYLC + Sbjct: 182 EWAIKNKKRVVISTNTINLQEQLLNKDIPIAKRVIQGDFKYILVKGRGNYLCNRKYHNVV 241 Query: 117 LAGG----DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD 172 + DL + + W NQT GD + A D+ W L S D C G+ Sbjct: 242 MGDKSLLEDLTTSQKNQFAEIIKWGNQTETGDKAELTFEA-DNTIWELFQSETDMCSGNK 300 Query: 173 CPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGF----GELIPEADVMIFDEAH 228 CP +CF +K+R + AD+++ NHH++ +D+ +++ ++PE +++FDEAH Sbjct: 301 CPYKNECFFLKSRDEKKKADILITNHHMYFSDLAIRKEIGFNTEYSILPEYGLVVFDEAH 360 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDI-----------------TIAYRTELKDTQQLQKC 271 + +A YF S I EL + L++ Sbjct: 361 NIEKVARDYFSYEASKYSFTKTMNQIFITEGKKKNTGALDSVLKHIKSEELDNHGILERE 420 Query: 272 ADRLA-----------QSAQDFRL-----QLGEPGYRGNLRELLANPQIQRAFLLLDDTL 315 + + + ++G +R E+ +P + D L Sbjct: 421 IEEIKLKHKSLYIAGREYFNHIIEVFSKGEMGTFTFRARKEEIENSPFLNTLNDFKDKFL 480 Query: 316 ELCYDVAKLSLGRSALLD-------------AAFERATLYRTRLKRLKEINQPGYSYWYE 362 + L +R + + + + + + YW E Sbjct: 481 SEYNSYNRKVRELIKELKDEEDRAGYINDFSKYIDRIDGFINNFRFIHDFSDEEFIYWIE 540 Query: 363 CTSR--HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES- 419 SR + L TPL + + ++ + IFTSAT+++ +D +F +G+++ Sbjct: 541 VNSRKSNSKLVATPLKIDGELQKNLYLNLNQIIFTSATIAIGNDFTYFKESIGLDKNTLD 600 Query: 420 LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 ++ SPFDY Q + + ++P + +++ L+ + + G+ F+L TS+ + Sbjct: 601 KVIHSPFDYDNQMKVYIPNDIPNPSDKNFIDEISEYLKTQLIVSRGKAFVLFTSYQTLNY 660 Query: 480 LAEQFRATM---TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 + R + + + + G + QL+ +++ N +L T SFWEGVD++G LS VI Sbjct: 661 VYYMIRDELEANGIELFIHGMAPRSQLVNMYINGKNPVLFGTDSFWEGVDIKGHQLSNVI 720 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 + KLPF P DP+ +A +E +G + F E Q+P+AVI KQG+GRLIR D G + I Sbjct: 721 LIKLPFKVPSDPVTEAIIEHITAQGKNSFTEYQIPEAVIKFKQGIGRLIRSKTDSGTITI 780 Query: 597 CDNRLVMRPYGATFLASLP 615 DNR++ + YG F+ S+P Sbjct: 781 LDNRVITKKYGKYFMDSIP 799 >UniRef50_D1N0Q3 Helicase c2 n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0Q3_9BACT Length = 701 Score = 521 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 199/645 (30%), Positives = 299/645 (46%), Gaps = 34/645 (5%) Query: 2 TDDFAPDGQLAKAIPG----FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLA 57 + FAP G L +A ++ R Q +M+ A+ A+ G+ L +EA TG GK++AYL Sbjct: 54 EEFFAPGGPLKQAAEYGGRPYEFRPQQLEMSTAIADALTAGENLCIEAPTGVGKSFAYLV 113 Query: 58 P----ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE 113 P A+ + + ++ST + LQ+QL +DLP + + AL KGR NYLC R Sbjct: 114 PLIYRAVHSGRPAVVSTETINLQEQLIDKDLPLLKQLTGINFKAALAKGRHNYLCRRRFA 173 Query: 114 QQALAGGDL---PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG 170 + D + DV L W +T DG+ + + W +V S NCLG Sbjct: 174 MLSGEQRDTLLPAAGLAVDVTRLGKWMQRTTDGERDSI-DFRLEPTVWSMVCSEGINCLG 232 Query: 171 SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG-----ELIPEADVMIFD 225 C +++CF KAR+ DAD+VV NH LF D+ ++ + G L+P ++ D Sbjct: 233 PKCEFFRNCFYYKARQAWEDADIVVANHALFFTDLGMRLASGGNGAAGSLLPNYGAVLID 292 Query: 226 EAHQLPDIASQYFGQSLSSRQLLDLAKDIT-----IAYRTELKDTQQLQKCADRLAQSAQ 280 EAH L D A+++ G LS ++ + +L+ A Sbjct: 293 EAHTLEDNAAEHLGLHLSRIGIVSTLNRLYNPEAARGLLMRKGADPELRGIVADARDEAY 352 Query: 281 DFRLQLGE--PGYRGNLRELLANPQIQR----AFLLLDDTLELCYDVAKLSLGRSALLDA 334 F + +R E+ + L L L D + R+ LDA Sbjct: 353 GFFKHFEDFLADHRETALEIQQPDRFPDRLSPHLLKLSKLLTDYLDDIDDASFRTE-LDA 411 Query: 335 AFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIF 394 R + + P Y+ E +L PL+VAD +++ + + Sbjct: 412 QLVRCREFLNGIDHFTHKTLPDAVYYAESDRNSISLHAAPLNVADILADVLFNQDFPVML 471 Query: 395 TSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAA 454 SATL+V +F +R G +LLL SPF S QA + + R +P LA Sbjct: 472 CSATLTVRRSFDYFVNRTGFCNGRTLLLDSPFG-SDQAHIYISRGMPDPKDDNFNAALAD 530 Query: 455 MLRPIIEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQGET-SKGQLLQQFVSA 510 + +E G+ F+L TS+ +R A+ R +L+QGE ++ LL++F Sbjct: 531 EIPRFVEVTQGKAFVLFTSYGTLRYCADALRGYFQEKGWQLLIQGENLTRTGLLREFKED 590 Query: 511 GNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQL 570 N++L T SFW GVDV G+ LS VI+ KLPF P PL+ ARM +G F E L Sbjct: 591 VNSVLFGTDSFWTGVDVPGEALSNVIVTKLPFAVPSHPLIAARMARIERQGKSSFAEYSL 650 Query: 571 PDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 P+AV+ +QG GRLIR DRG++V+ D R++ + YG FL SLP Sbjct: 651 PEAVLKFRQGAGRLIRSRSDRGIIVLLDKRVISKNYGRIFLDSLP 695 >UniRef50_A9GFB8 ATP-dependent helicase n=2 Tax=Myxococcales RepID=A9GFB8_SORC5 Length = 697 Score = 520 bits (1340), Expect = e-146, Method: Composition-based stats. Identities = 226/672 (33%), Positives = 336/672 (50%), Gaps = 48/672 (7%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 P G A+ + G++ R+ Q MA AV +A+ + + L+ EAGTGTGKT AYL PA+ Sbjct: 7 ASLLGPSGPFARGLDGYEDRQGQVAMASAVERALAEDRILLCEAGTGTGKTLAYLVPAIL 66 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 + +KV++ST +KAL+DQ+Y++DLP V++ L+ AL+KG NYLCL R + + G Sbjct: 67 SGRKVVVSTATKALEDQIYTKDLPLVAEHLRLDPRAALVKGLGNYLCLRRFSELRTSPGA 126 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 + L+ +W+ +T GD++ +AE W V S+++ LG+ C ++ CFV Sbjct: 127 GAGIAGRSLPLIEAWAQETEMGDVAELAHLAEGDPLWREVASSSETRLGASCEYFERCFV 186 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESG------FGELIPEADVMIFDEAHQLPDIAS 235 + ++ + A ++VVNHHLF AD+ +K +G +P D +IFDEAHQL DIA+ Sbjct: 187 TRMKRDSEAARLLVVNHHLFFADLALKMAGARRGFAGAGALPPYDAVIFDEAHQLEDIAT 246 Query: 236 QYFGQSLSSRQLLDLAKDITIAYRTELKDTQQL------------QKCADRLAQSAQDF- 282 +FG +S ++ + +D A+ + L ++ AD L Sbjct: 247 GFFGVRVSRARVDSMLRDADRAFIASGLADRILGRGEGTAITAVVRESADALFDRLASLG 306 Query: 283 --RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERAT 340 R L + ++ A+ LDD LE + S + RA Sbjct: 307 GAAGGGDRGEARSPLARDAWSGELLDAYHRLDDHLEALA-AYASANAISEAVQLVGNRAA 365 Query: 341 LYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLS 400 R R+ + W E R + +P+ + D +E + ++ G+ + TSATL+ Sbjct: 366 QLRDDAARIVDPAT-NQVTWVEVRGRAVSFGASPVDLGDMLREHVFERIGAVVLTSATLT 424 Query: 401 VNDD----LHHFTSRLGIEQ-----AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQ 451 SR+G+++ + L +PSPFDY ALL R+LP+ + Sbjct: 425 TGGSAGAGFRFLRSRMGLDEDVSVPVDELEVPSPFDYPTAALLYTPRDLPEATDAAFVER 484 Query: 452 LAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTL----------------PVLLQ 495 A +I G F+LCTS M LA R + P+L+Q Sbjct: 485 AADRAAELIGITGGGAFLLCTSIRAMNALAAALRVRLGRAAAVARADGGAPGRQAPLLVQ 544 Query: 496 GETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARME 555 G+ KG LL++F + +A+LVAT SFWEGVDV G+ L LVII+KLPF P DP++ AR Sbjct: 545 GDAPKGALLRRFRAERHAVLVATMSFWEGVDVPGEALRLVIIEKLPFAVPTDPVVAARCT 604 Query: 556 DCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 GG+PF +P A ITLKQG GRLIR DRG++ I D R+ R YG L SLP Sbjct: 605 AIEQGGGNPFIAYSVPQAAITLKQGFGRLIRARTDRGIVAILDRRIRTRGYGRVLLDSLP 664 Query: 616 PAPRTRDIARAV 627 A RT I Sbjct: 665 DARRTDRIEDVR 676 >UniRef50_Q1PXS1 Similar to ATP-dependent DNA helicase (DNA-damage-inducible protein G) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PXS1_9BACT Length = 847 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 199/716 (27%), Positives = 321/716 (44%), Gaps = 87/716 (12%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 +++ P G L+ IPG++ RE Q M +V+ A +EAGTGTGK+ AYL PA+ Sbjct: 130 LSNLLRPGGILSVTIPGYEYRESQVDMLTSVSDAFNNDTVATIEAGTGTGKSLAYLLPAI 189 Query: 61 RA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 K++V+IST + LQ+QL +D+PT+ L+KGR+NY+CL + + Sbjct: 190 FWSVKNKERVVISTNTINLQEQLMYKDIPTLKIENIPNFKSVLVKGRNNYICLRKAQNLQ 249 Query: 117 LAGGDL-PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 G L + +I + SW+ +T DG + + D+ W +V S D C C Sbjct: 250 FEGDMLIEEREKKQLIHILSWAEKTRDGSKADLNLLVNDN-VWEMVQSEADQCTRLKCNF 308 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG----ELIPEADVMIFDEAHQLP 231 Y CF AR+ A AD++V+NHHL +AD+V+++ G ++P +I DEAH L Sbjct: 309 YNKCFFYSARRNASSADILVINHHLLMADLVLRKETRGYDSTAILPPFKRIIIDEAHNLE 368 Query: 232 DIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQ----------- 280 +A+ G S S ++L + + L+ + Sbjct: 369 SVATSNIGLSFSRMRILKPLGKLVNQKDNKKGLLPFLKNKIKDVDFQCNKDITVDITEGI 428 Query: 281 ----------------------------DFRLQLGEPGYRGNLR---ELLANPQIQRAFL 309 + E G LR ELL+ P + Sbjct: 429 YPQLLDMRIEIYTCVTNTFSDIFESVNSYINNKFLENGVELKLRITDELLSTPLWSDSIE 488 Query: 310 LLDDTL------------ELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKE------ 351 L +L + +L +L + F T +TRL K Sbjct: 489 KKIRHLCTEIHNFVILLNKLIAAIERLDKESRDILSSLFIDITSCKTRLNTAKNDLFSFI 548 Query: 352 INQPGYSYWYECTSRH----FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHH 407 ++ W E + P+ +++ K + + I TSATL++++ Sbjct: 549 RSEENLCRWIELRRYNDNFFIKFCNAPIDISNALKAYLFDNYRTIILTSATLTIDNTFTF 608 Query: 408 FTSRLGI-----EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEA 462 + G+ ++ L+L SPFDY Q+++C+ ++ + + L L +I Sbjct: 609 YQKNTGLHLLPEKRITELILSSPFDYKSQSMICIPTDISDPDDSYYKKDLVENLSKLIAI 668 Query: 463 NNGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQGETSKGQLLQQFVSAGNALLVATS 519 +GR +L TS+ ++ D+ + + L QGE ++ LL+ F + ++L AT Sbjct: 669 TDGRSLVLFTSYRLLNDIFDMLKPYFTGQGYTCLKQGEDNRHNLLETFKNDKTSILFATD 728 Query: 520 SFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQ 579 SFWEG+DV+GD L VII +LPF P++P+++AR E ++GG+ F + LP AV+ LKQ Sbjct: 729 SFWEGIDVKGDALECVIITRLPFKVPNEPIIEARTEAIEMKGGNSFYDYSLPVAVLKLKQ 788 Query: 580 GVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTR-----DIARAVRFL 630 G GRLIR +DRGV+ I D R+ + YG F+ SLP A + F Sbjct: 789 GFGRLIRSKEDRGVVFIFDRRIATKSYGKVFIKSLPKAKCIKKNTEHVFKELENFF 844 >UniRef50_B8CW80 Helicase c2 n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW80_HALOH Length = 822 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 194/696 (27%), Positives = 334/696 (47%), Gaps = 61/696 (8%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + F P G L++ + ++ RE Q ++ V + + ++EAGTGTGK++AYL PAL Sbjct: 126 IIEFFEPGGSLSQFLNDYEYREQQLEVVREVINSFNNHEFTLIEAGTGTGKSFAYLVPAL 185 Query: 61 RAKKK----VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLER---LE 113 KK V++ST + LQ+QL +DL + KAL + ++KGRSNY+C + LE Sbjct: 186 FWAKKNEKTVVVSTNTINLQEQLIYKDLVLLKKALSFDFKAVMVKGRSNYICKRKIKHLE 245 Query: 114 QQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDC 173 Q+ D + + W ++ G S V D++ W + S D CL ++C Sbjct: 246 QELNNYFDDDPEKQVQFYKVLDWLEESKSGSKSELNFVV-DNEIWNEIASETDLCLRTNC 304 Query: 174 PMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKES---GFGELIPEADVMIFDEAHQL 230 P + C+ +KARK+ AD+++VNHHL L+D+++K G ++P +I DEAH Sbjct: 305 PFFDTCYFMKARKEVFSADILIVNHHLLLSDIMLKSEYSERDGGILPRYSNLIIDEAHNF 364 Query: 231 PDIASQYFGQSLSSRQLLDLAKDIT--------------IAYRTELKDTQQLQKCAD--- 273 +IAS++ G+ + L + T LK+ +++ K D Sbjct: 365 DEIASRHLGRPFYYKLLHKYLNKVYYPKNRLSLIPRIRNRFSATNLKNKKEVLKIIDTEI 424 Query: 274 -----RLAQSAQDFRLQLGEPGYRG---------NLRELLANPQIQRAFLLL-------- 311 R+ + + ++ +L E + ++ E A +I + L Sbjct: 425 VPQVKRVEEQSHEYFQKLNEFVNQDGEGVIRLTQDIIEGEAYSKIVDSGDTLLGNLNNLG 484 Query: 312 -------DDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECT 364 ++ + L L+A R + L+ + + Y +W E Sbjct: 485 IYLNNLYEEFMTLNSSDISNFEELIIELEAYINRCQHFAKSLEFNIKAEEENYVFWIEKD 544 Query: 365 SR-HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLP 423 + PL V++ +++ + + I TSATL+VND+ ++F + LGI + L + Sbjct: 545 YNLNVKQENAPLKVSNIIDKILWETMDNVILTSATLTVNDNFNYFKTILGINKCSQLKIE 604 Query: 424 SPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQ 483 SPF+YS QA L + ++P N +L+ ++ G +L TS++M+ ++ Sbjct: 605 SPFNYSEQATLIISDDIPPANSKKYLPVATDILKEMLLLLRGSTLVLFTSYSMLNYCTKK 664 Query: 484 FR---ATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL 540 + +L QG + +L+ F + N ++ T SFWEGVD++GD L +++ KL Sbjct: 665 IEPVLKDDGIVILPQGRYPRKYILETFKANSNQVIFGTMSFWEGVDIKGDDLRYLVMMKL 724 Query: 541 PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR 600 PF P +P+ ARME + G +PF LP+AVI KQG GRLIR + D G ++ D+R Sbjct: 725 PFPVPTEPVSAARMEQLKEEGKNPFTNFSLPNAVIRFKQGFGRLIRSSKDTGKIICLDSR 784 Query: 601 LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR 636 + + YG FL S+P + + + V + +S+ Sbjct: 785 IKTKSYGRVFLNSIPSGCPVKVMDKTVLLQELHNSK 820 >UniRef50_C8W6D5 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8W6D5_DESAS Length = 957 Score = 516 bits (1329), Expect = e-144, Method: Composition-based stats. Identities = 192/681 (28%), Positives = 326/681 (47%), Gaps = 70/681 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + D P+G+LAK P ++ R Q QM+VAV Q + K L+ EAGTGTGK+ AYL PA+ Sbjct: 252 VVDILGPEGELAKQHPHYEHRPQQLQMSVAVAQTLNKQSLLLTEAGTGTGKSMAYLVPAV 311 Query: 61 RA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 +++V++ST + LQ+QL+ +D+P + + + AL+KGR NYLCL R + Sbjct: 312 LWSAQNRERVVVSTHTINLQEQLWFKDIPMLQQMFGKSFRAALVKGRQNYLCLSRWSEVF 371 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 + + + W +T GD S + W +++ +D C G+ C + Sbjct: 372 SSTDNHSRWEALFYSRILVWLTKTQTGDRSEINLNGAEYDYWSKISADSDRCKGNQCHWF 431 Query: 177 KD-CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIAS 235 + CFV +A+K A ++D++++NH L +D+ V+ ++P ++ DEAH L ++A+ Sbjct: 432 QKACFVSRAKKTAENSDLIIINHSLLCSDLQVENR----ILPSYGPLVIDEAHHLENVAT 487 Query: 236 QYFGQSLSSRQLLDLAKDITI----------------------AYRTELKDTQQLQKCAD 273 ++FG +S + + A R ++D + Sbjct: 488 EHFGYMISESSIKRWLESTDKLAIKLSHNPAAEANNNFDQKIYAVRKSVEDIRHASGVYF 547 Query: 274 RLAQSAQDFRLQLGEPGYRGNLRE-----------------LLANPQIQRAFLLLDDT-- 314 L ++ EP N L+ + F +L D Sbjct: 548 NLLRTEHSINDYAEEPVEAANQNAGGLCVSRLYKEAGQEQLLVEEDNLLTGFKILMDNLK 607 Query: 315 -----LELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECT----S 365 LE+ + + + + T ++ + + P + YW E + Sbjct: 608 KIMLKLEIWAAQYEKWVNTAKIFSLHLNLGTQLFASIEFILTHSDPNFVYWMEKNYFQSN 667 Query: 366 RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI----EQAESLL 421 + TL +P+ + E + + I TSATLS+ +F R+G+ E+ L Sbjct: 668 TYITLRSSPIDIGKLLYEKLFASKKAVILTSATLSIAGSFDYFKERVGLNLYTEEISELQ 727 Query: 422 LPSPFDYSRQALLCVLRNLPQTN---QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 + SPF+Y +QA L + +LP N + +LA ++ ++ + G+ +L TSH ++ Sbjct: 728 IDSPFNYGKQAKLFLTSDLPSQNEVPEQFYHTELANIIEKLVNVSQGKTLVLFTSHRSLK 787 Query: 479 DLAEQFRATM-TLPVLLQG---ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSL 534 + + + +LL G + S+ L+++FV A+L T+SFWEG+D+ GD+LS Sbjct: 788 QTYLRLKPVLEDKEILLLGHNIDGSRSALIEEFVRNKKAVLFGTASFWEGIDIPGDSLSS 847 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 VII KLPF +P P+++AR+E +G + F E LP AVI KQG GRLIR + D G + Sbjct: 848 VIIVKLPFWAPSIPIIEARLESLIKQGKNGFWEFSLPQAVIRFKQGFGRLIRSSRDYGAV 907 Query: 595 VICDNRLVMRPYGATFLASLP 615 ++ D R++ + YG FL SLP Sbjct: 908 IVLDKRIIQKKYGRYFLNSLP 928 >UniRef50_B4D6W3 Helicase c2 n=2 Tax=Verrucomicrobia RepID=B4D6W3_9BACT Length = 661 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 214/644 (33%), Positives = 320/644 (49%), Gaps = 27/644 (4%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA- 59 + + F+ G LAKA F+ R Q++MAV+V A+ + + +V+EAGTG GK+ AYL PA Sbjct: 17 VREIFSETGMLAKA-KNFEYRREQQEMAVSVATALSEQRHVVIEAGTGVGKSLAYLVPAV 75 Query: 60 ---LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 L KKK ++ST + LQ+QL +D+P V K L L KGR+NY+C RLE+ Sbjct: 76 LWALEHKKKAVVSTYTINLQEQLVYKDIPIVQKVLPVEFEAMLWKGRANYICPLRLERAI 135 Query: 117 LAGGDL-PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 +L +++ + W+ T DG +S SV DS W V S C C Sbjct: 136 AHAQELFTSPEQAELQRIWEWAQTTQDGTLSD-FSVEPDSSVWAQVCSEQHICTTKSCGN 194 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADM---VVKESGFGELIPEADVMIFDEAHQLPD 232 CF +ARK+ + ADVVV+NH LF ++ +E + D +IFDEAH + Sbjct: 195 NPKCFYQRARKRLLTADVVVMNHTLFFLNLGGIAEQEENESGYLFANDFVIFDEAHTVEQ 254 Query: 233 IASQYFGQSLSSRQLLDLAKD----ITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE 288 +A++ G +S L + T ++ K L + F +LGE Sbjct: 255 VAAKQIGLGVSQYGLRYALQRLYNPKTKKGLFQVHRNPNAVKETATLIEEVDSFFDKLGE 314 Query: 289 PGYRGNLREL---LANPQIQRAFLLLDDTLELCYDVAKLSLGR--SALLDAAFERATLYR 343 G RE + + L ++ + + A L R R Sbjct: 315 RGDFKKGREYRVRQPDIVMDSLTAPLAKLQQMVVETLRGIEDDLGKAELQDLGRRIRDAR 374 Query: 344 TRLKRLKEINQPGYSYWYECTSR---HFTLALTPLSVADKFKELMAQKPGSWIFTSATLS 400 + + + + YW E T + + L P+ VA + L+ + I TSATLS Sbjct: 375 SAIATFLKQEAEDHVYWIEKTGKTQQYHALHAAPVDVAAYLRALLFPEGKCCIMTSATLS 434 Query: 401 VNDD-LHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPI 459 V ++ L +F +R+G ++ E+ + SPFDY RQ + V R +P G LA + Sbjct: 435 VGNEALTYFRNRVGADEVEARQIGSPFDYERQMKIYVTRKMPDPRDSGYEAALAEQIEHF 494 Query: 460 IEANNGRCFMLCTSHAMMRDLAEQFRATMT---LPVLLQGET-SKGQLLQQFVSAGNALL 515 + + GR F+L TS+ M +LA R + +L+QGE + +L+ +F +L Sbjct: 495 VGMSKGRAFVLFTSYKAMTNLASALRERLDDLDYKLLVQGEGLPRHRLISEFKKDERHVL 554 Query: 516 VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVI 575 T SFW GVDV G+ LS VII +LPF PD PL++AR+E GGD F E LP+A++ Sbjct: 555 FGTESFWSGVDVPGEALSNVIITRLPFAVPDHPLIEARLELIEANGGDAFAEYSLPEAIL 614 Query: 576 TLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPR 619 L+QGVGRLIR D+G++VI DNR++ + YG F+ +LP P Sbjct: 615 KLRQGVGRLIRTKQDQGIVVILDNRVLTKSYGQAFMRALPKCPV 658 >UniRef50_C6JKU1 ATP-dependent helicase n=2 Tax=Fusobacterium RepID=C6JKU1_FUSVA Length = 832 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 184/681 (27%), Positives = 323/681 (47%), Gaps = 69/681 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 +T F G L++ GF+ R+ Q MA + + + ++VEAGTGTGKT AYL P Sbjct: 127 ITPYFEKTGLLSQTFKGFEYRDEQLHMAKHIENGLNDEKKVIVEAGTGTGKTLAYLIPSV 186 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 A++ KK+V+IST + LQ+QL ++D+P K ++ L+KGR NYLC + A Sbjct: 187 EWAIKNKKRVVISTNTINLQEQLLNKDIPIAKKVVQGDFRYILVKGRGNYLCNRKYFNLA 246 Query: 117 LAGG----DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD 172 L + + + W +T GD S ++S W L S D C G+ Sbjct: 247 LGENVNFEEFSNSQKTQFKEIIIWGKKTEKGDKSELPFEVDNS-VWELFQSETDICAGAK 305 Query: 173 CPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGF----GELIPEADVMIFDEAH 228 CP +CF +K+R++ +AD+++ NHH++ +D+ +++ ++PE +++FDEAH Sbjct: 306 CPYKGECFFLKSREEKKNADILITNHHMYFSDLAIRKEIGFNTEYSILPEYGLVVFDEAH 365 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRL---- 284 + +A YF S + I A + K+T L + + ++ D R Sbjct: 366 NIEKVARDYFSYEASKYSFTKIMNQIF-ATEGKKKNTGSLDILLNYIKNTSLDSRNILEK 424 Query: 285 ------------------------------QLGEPGYRGNLRELLANP------------ 302 Q+G +R E+ +P Sbjct: 425 EIKEIKIKHKSLFLEGREYFNHIIEVFSKGQMGTFTFRAKKEEMEHSPFLSSLIDFREKF 484 Query: 303 --QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 + + ++ D + + +R + + + + + + YW Sbjct: 485 TSEYNSYMRKVRSLIKEIRDEEDEQGTINDFI-KYTDRLENFFNNFRFINDFDDEEFIYW 543 Query: 361 YECTSR--HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE 418 E SR + L TPL + ++ ++ + IFTSAT+++ D +F +G+E+ Sbjct: 544 IEVNSRKSNSKLVATPLKIDNELQKNLYINLKQIIFTSATIAIGSDFSYFKESIGLEEDT 603 Query: 419 S-LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 ++ SPFDY +Q + + ++P + +++ L+ ++ + G+ F+L TS++ + Sbjct: 604 LDKVIHSPFDYDKQMKVYIPDDIPNPSDRNFVDEISEFLKALLIKSKGKTFVLFTSYSAL 663 Query: 478 RDLAEQFRATM---TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSL 534 + R + + + + G + L+ +++ N +L T SFWEGVD++G LS Sbjct: 664 NYVYYLLRDDLEANGIELYIHGMAPRTHLVNMYINGRNPVLFGTDSFWEGVDIKGKQLSS 723 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 VII KLPF P DP+ +A +E+ +G + F E Q+P+AVI KQG+GRLIR D G + Sbjct: 724 VIIVKLPFKVPSDPVTEAIIENITAQGKNSFIEYQIPEAVIKFKQGIGRLIRSKTDHGTV 783 Query: 595 VICDNRLVMRPYGATFLASLP 615 I DNR++ + YG F+ S+P Sbjct: 784 TILDNRVINKRYGKYFMESIP 804 >UniRef50_B6BV17 Helicase c2 n=1 Tax=beta proteobacterium KB13 RepID=B6BV17_9PROT Length = 640 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 209/635 (32%), Positives = 330/635 (51%), Gaps = 11/635 (1%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 F G LA + ++ R+ Q QMA + +++ + +V+EAGTG GKT YL P +R Sbjct: 9 DHFFDEKGPLASHLSNYQKRDGQVQMAQFIDESVTLKKTVVIEAGTGIGKTLGYLLPLVR 68 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 KK+IIST +K LQ+QL +D P + KALK NV++LKGRSNYLC R+ + Sbjct: 69 QNKKIIISTATKNLQEQLLEKDFPILQKALKLNFNVSILKGRSNYLCHHRINNHSKM--F 126 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 S + +T GD++ + VTST++NCL DC DCFV Sbjct: 127 FSKADASIFSDVEGLLKKTNTGDVAELKKNFSGN-ITHAVTSTSENCLFGDCKFSNDCFV 185 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS 241 KAR++A A+V+VVNHHLF +D + L+P++DV++FDEAH L D+A Y + Sbjct: 186 NKARRRAHSAEVIVVNHHLFFSDFFNENDDANNLLPKSDVIVFDEAHNLIDLAMLYSSKV 245 Query: 242 LSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLAN 301 SS +L + D+ + + + +R S + + + +L +L Sbjct: 246 FSSLKLNRVLDDLINHLKNSVIGLENFSMIFNRYNFSISQLLDLVKDEPQKISLYKLSQL 305 Query: 302 PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 + + + + LE + K + +DA+ + + LK + ++ + W Sbjct: 306 TTFKDHLIEIMNNLEELINAIKEPGFINKDIDASIKELNNFIELLKNIINPSEKKNALWL 365 Query: 362 ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL 421 E + ++ +TP+ V F + A S +FTSAT++ N++ +F G++ E+ + Sbjct: 366 EKFNNSISIHITPVDVKGIFSKTTASN-DSMVFTSATMTTNNNFDYFKDLTGLKDIETRV 424 Query: 422 LPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 SPF+Y + ALL + LP N+ L P I+ N GR L TS + +A Sbjct: 425 FESPFNYEKNALLHIPMGLPNPNEKDFFSSLVDYAYPAIKLNKGRTLFLTTSLNGVEQVA 484 Query: 482 EQF-----RATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 QF R TL +L QG L+++F ++ N +L+ + SFWEG+D+ GD L+L+I Sbjct: 485 NQFEFINNRNADTLNILRQGMLPNQLLIEEFKNSQNCVLIGSFSFWEGIDLIGDNLTLLI 544 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 IDKLPF SPDDP++ A++ D F + Q+P + +KQG+GRLIR+ D+GV ++ Sbjct: 545 IDKLPFKSPDDPIVDAKINLLNE--KDFFMKSQIPMTTLLMKQGMGRLIRNFSDKGVAIL 602 Query: 597 CDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 DNR+ + YG L SLPP D + + F+ Sbjct: 603 GDNRIQKKYYGKQILKSLPPFQLVEDYNQVLNFIE 637 >UniRef50_Q1K3T5 Helicase c2 n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3T5_DESAC Length = 850 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 209/713 (29%), Positives = 318/713 (44%), Gaps = 84/713 (11%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + A G LA + ++ R Q +MA+AV +A + +EAGTGTGK+ AYL PA+ Sbjct: 130 VAHVLAAHGPLASHLGSYEERPEQLRMALAVAEAFNQNGLATIEAGTGTGKSLAYLIPAI 189 Query: 61 RAK----KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 + V IST + LQ+QL S+DLP + + + + L+KGR+NYLCL RL+ Sbjct: 190 MWALDNEQPVAISTNTINLQEQLISKDLPLLKEVMDREFHSVLVKGRNNYLCLRRLDSAH 249 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 + ++ L W+ T G + S W V D C + CP Y Sbjct: 250 REPDLFQNEQSGELAQLHEWAAATNVGSRDEL-TFIPSSAVWMEVCCEMDQCPRTRCPHY 308 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKE----SGFGELIPEADVMIFDEAHQLPD 232 CF KAR++A AD++VVNH L L+D+ ++ ++P ++FDEAH L D Sbjct: 309 SRCFFHKARRRAAHADLLVVNHALLLSDLSLRAETENYSAAAVLPPYSRIVFDEAHHLED 368 Query: 233 IASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQL----------------QKCADRLA 276 A++ F LS + + E +L R+ Sbjct: 369 AATRNFSIRLSHLSFAYSLNRLVHPRKPEKGLLPRLLSTLARELPDTLSALYDSLYRRIE 428 Query: 277 QSAQDFRLQLGEPG--YRGNLRELLANPQ-----------------------IQRAFL-L 310 +A D R + G + G +LL + +Q+ F L Sbjct: 429 TAALDCRQLRDDLGETFTGQRDKLLQTDESASANGFCWRITPQCTETERWLVLQKGFAPL 488 Query: 311 LDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ-------------PGY 357 + L + +L L + FE+ + T ++ + Q Sbjct: 489 IKQCESLSNHLDQLIKACEQLPEKLFEQVSGQLTDIRAMSGRIQCMGSELAIVLSAGDSA 548 Query: 358 SYWYECTSRH-------FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTS 410 W E L P+SVA K+ + + S +FTSATL+VN H+F Sbjct: 549 CTWIEINESRGRKRDKILWLNSAPISVAATLKQAVYDRFRSIVFTSATLTVNRQFHYFHQ 608 Query: 411 RLGIE-----QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNG 465 R G+ + + L L SPFD++ QA + + ++ A LA + + A+ G Sbjct: 609 RTGLNLCPEKRRQQLCLDSPFDFASQARVVIPTDIVPPTHQNYAAMLAEQVEQAVIASEG 668 Query: 466 RCFMLCTSHAMMRDLAEQFRATM---TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFW 522 R F+L T++++++ L + + L QG++++ LL++F +L T SFW Sbjct: 669 RSFVLFTAYSLLKKLYNELEPPLHARGFNCLYQGQSARHLLLKKFRLDQKHILFGTDSFW 728 Query: 523 EGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVG 582 EGVDV G L VII +LPF P +P+ AR E G DPF +P AV+ LKQG G Sbjct: 729 EGVDVPGQALQQVIITRLPFRVPTEPIQIARSEHLEQMGVDPFMHYTVPQAVLRLKQGFG 788 Query: 583 RLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA-----RAVRFL 630 RLIR DRGV++I D R++ + YG FL SLPPA R A + +F Sbjct: 789 RLIRHRQDRGVVLILDQRVISKGYGRIFLNSLPPAQRLTGPAQTIQQQLRQFF 841 >UniRef50_D1CG63 DNA polymerase III, epsilon subunit n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CG63_THET1 Length = 960 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 230/712 (32%), Positives = 345/712 (48%), Gaps = 86/712 (12%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + F+P G+L+K PG++ R+ Q MA+ V ++I + LVVEAGTGTGK+ AYL P Sbjct: 252 IESIFSPGGELSKTFPGYEVRDQQIDMALEVVRSINNSKHLVVEAGTGTGKSLAYLIPSA 311 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALK---YTGNVALLKGRSNYLCLERLE 113 AL+ ++V+IST + LQDQLY++D+P V K L V+L+KGR+NYLCL R E Sbjct: 312 IFALKNNQRVVISTDTINLQDQLYNKDIPAVRKLLGGKGKDLRVSLVKGRNNYLCLNRWE 371 Query: 114 QQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDC 173 + +G + P + V + W T+ GD+S +++ Q W V++T + C C Sbjct: 372 RFLRSGINTPEEAKFAV-KVLLWLQTTITGDVSELPLTSDEKQFWQRVSATEETCTTRVC 430 Query: 174 PMYK--DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLP 231 K CF+ +AR +A + +VV+NH L L+D+ ++P D +I DEAH+L Sbjct: 431 RNRKGRQCFLFRARVEAESSHLVVINHALLLSDLASN----NSVLPNYDYLIIDEAHRLE 486 Query: 232 DIASQYFGQSLSSRQLLDLAKD-------------------ITIAYRTELKDTQQLQKCA 272 D A+ + G + SR L +L R +Q+ A Sbjct: 487 DQATNHLGFEVDSRALHELLNRVMDNSNPVRPEGISARLPVHMQGSRASNASVEQVTNIA 546 Query: 273 DRLAQSAQDFRLQLGE----------------PGYRGNLR-------------ELLANPQ 303 RLAQ + R ++ E GY +LR LLA Sbjct: 547 MRLAQRTERTRARVDEFFASLGRLLPASMGMQNGYDEHLRLTAEVRGGEQWEGVLLAWEN 606 Query: 304 IQRAFLLLDDTLELCYDV--------AKLSLGRSALLDAAFERATLYRTRLKRLKEINQP 355 ++ L D + C ++ A + A Y + + Sbjct: 607 LKLTLRELVDEVHHCGELLEGLEGLHIAEYEELLAEVQAIEVFLQDYIHEMNSIITAPTE 666 Query: 356 GYSYWYECTSRH--FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG 413 W + R+ TL PL V +E + K + I TSATL+ + + + T RLG Sbjct: 667 NDVTWISYSHRYGTITLHKAPLDVGGILQEELYSKKKAVILTSATLTTDRNFDYVTGRLG 726 Query: 414 IEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTS 473 + + + L+L SPF+Y ALL V ++P+ G + +++ ++ A GR +L TS Sbjct: 727 LYEFQQLMLGSPFNYQETALLLVPTDIPEPGTAGYQDAVESLVAELVLAAEGRTMVLFTS 786 Query: 474 HAMMR----DLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRG 529 H+ ++ + + A + VL QGE S+ +LLQQF S +L+ T SFWEGVDV G Sbjct: 787 HSAVQATQKAIYREL-ARHDILVLSQGEGSRHRLLQQFKSNPRTVLIGTRSFWEGVDVVG 845 Query: 530 DTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDAD 589 D LSL+II KLPF P++P+ AR E D F++ +P A++ LKQG GRLIR Sbjct: 846 DALSLLIIAKLPFEVPNEPVFVARSETFA----DAFNDYAIPQAILRLKQGFGRLIRSKT 901 Query: 590 DRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA-----RAVRFLAIPSSR 636 DRGV+VI D R++ + YG FL SLP + A R+L S Sbjct: 902 DRGVVVILDKRVLTKRYGVKFLTSLPNCKMQKGPARLLAPEVKRWLGQNSEE 953 >UniRef50_Q39QU4 Helicase c2 n=11 Tax=Bacteria RepID=Q39QU4_GEOMG Length = 876 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 212/719 (29%), Positives = 315/719 (43%), Gaps = 86/719 (11%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + FAP G LA +PG++ RE Q +MA AVT+A + V+EAGTGTGK+ AYL PA+ Sbjct: 160 IERIFAPAGVLAANLPGYEHREEQLRMAFAVTEAFNDDRVAVIEAGTGTGKSLAYLVPAV 219 Query: 61 RA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 K+++++ST + LQ+QL +D+P + + L+KGRSNYLCL +L Sbjct: 220 LWAIRNKERIVVSTNTINLQEQLIKKDIPFLQRHAGVQFRAVLVKGRSNYLCLRKLAGVK 279 Query: 117 LAGGDLPVQ-ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 ++ + +WS +T +G S + + W V D C CP+ Sbjct: 280 SEPSLFADDPAAGELEAIIAWSEKTAEGCRSDLSFIP-KPETWEEVACEADQCGRIKCPL 338 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGE---LIPEADVMIFDEAHQLPD 232 Y CF AR++A ADV+VVNH L +AD+ +++ ++P + ++ DE H L D Sbjct: 339 YARCFFYGARRQAASADVLVVNHALLMADVALRQETGYRSTAILPPFERLMVDEGHHLED 398 Query: 233 IASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADR-----LAQSAQDFRLQLG 287 +A+ + +S + +L L + + + QL R L +D +L Sbjct: 399 VATGHLSSQVSRQGILKLLGRLQNPRKAQRGLLPQLSAQLSREVPVELDDLYRDLAERLE 458 Query: 288 E---------------------------------PGYRGNLRELLANPQIQRAFLLLDDT 314 E LR + + D+ Sbjct: 459 EKLISRTQELAAGAVRAMDAIGLALLSHLKGKGPENGEKKLRVTPSLFGSKLWQETDDEA 518 Query: 315 LELCYDVAKLSLGRSALLDAAFE---------------------RATLYRTRLKRLKEIN 353 EL D+ L R L + Sbjct: 519 RELAADLNTFVRELKEFLTGCGRLPEAVQEKLSGLLVDLRGVTGRLEALAADLLFFIGRD 578 Query: 354 QPGYSYWYECTSRH----FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFT 409 W+E L +PL VA K + + + TSATL+V + + Sbjct: 579 GE-VCRWFEVKKGAKGIAVRLCASPLEVAASLKRTVFDAFRTVVVTSATLAVGETFDYLE 637 Query: 410 SRLGI-----EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANN 464 R GI + LLL SPFDY RQA + + +LP+ G L L + +N Sbjct: 638 GRTGIALLDRGRVTELLLASPFDYERQAFVGIPADLPEPTSRGFQEALEVALHRGLAISN 697 Query: 465 GRCFMLCTSHAMMRDLAEQFRATMTLPVLL---QGETSKGQLLQQFVSAGNALLVATSSF 521 G F+L TS+ ++ + + + L QGE ++ LL +F NA+L T SF Sbjct: 698 GHAFVLFTSYDLLSRIHGRMAEALRRRGLTPMRQGEINRHHLLARFRKEPNAVLFGTDSF 757 Query: 522 WEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGV 581 WEGVDV+G L LV+I +LPF P +P+L+AR + LRGGDPF E +P AVI KQG Sbjct: 758 WEGVDVQGKALELVVITRLPFRVPTEPILEARADHIALRGGDPFMEYTVPQAVIKFKQGF 817 Query: 582 GRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT-----RDIARAVRFLAIPSS 635 GRLIR +DRG ++I D+R++ + YG FL SLPP RF + S Sbjct: 818 GRLIRSREDRGAVLILDSRVLSKNYGRFFLRSLPPVRLADGGSGEVFGEMERFFSSSPS 876 >UniRef50_A6DIX1 ATP-dependent helicase, DinG family protein n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIX1_9BACT Length = 644 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 192/630 (30%), Positives = 307/630 (48%), Gaps = 25/630 (3%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK------KVIIST 70 F+ R Q MA V A+ +G L VEA TG GK+ AYL PA++ + +II+T Sbjct: 15 DFERRPQQETMASKVYYALSEGLNLCVEAPTGVGKSIAYLLPAVKWHRNTEQTKPIIITT 74 Query: 71 GSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD--LPVQILS 128 +K LQ+QL +D+P V L N + GR NY+C+ R+ A D ++ Sbjct: 75 HTKHLQEQLLKKDVPAVQLMLGEDFNAVIGMGRGNYICMRRMNAAAAGSPDFLPDESMIP 134 Query: 129 DVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKA 188 +V ++SWS + +G + D+ AW V + NCL CP +K CF K+R+ Sbjct: 135 EVFRIKSWSATSENGCKTELPFAV-DNGAWGTVNAEEGNCLNQRCPHFKPCFFQKSRRSL 193 Query: 189 MDADVVVVNHHLFLADMVVKESGFGE---LIPEADVMIFDEAHQLPDIASQYFGQSLSSR 245 ADV++VNH LF AD+ +K E ++P A +I DE H + D+A+ + G LS+ Sbjct: 194 YGADVIIVNHALFFADLAIKAETGDEQAGILPSASAIIVDECHTVEDVAAVHLGIRLSAG 253 Query: 246 QLLDLAKDITIAYRT--------ELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRE 297 L + I + + K D + Q L + + E Sbjct: 254 TFLYQLRRIYNKRSKRGAISTVSDNRGRHLAAKMHDEVRDFFQSLHAWLPDENKTHRIHE 313 Query: 298 LLANPQ-IQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPG 356 + + L LEL D + + + + R L + Sbjct: 314 PVVPENPLAEGLTQLCGLLELYADEEEGNPEKETEYRSLSRRLLKLTDSLSFFLRASSEE 373 Query: 357 YSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ 416 + +W+E +++H ++ + VA +L+ + + TSATL+V++ L ++ SR+G+ + Sbjct: 374 HVFWFEKSTKHLSMHAAAIDVAPILNDLLFRSKTPVVTTSATLAVSEKLSYYRSRVGMSE 433 Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 + ++L SPFD+ Q + + LP + ++ LR I + G F+L TS + Sbjct: 434 SLDMILDSPFDFKNQMKVFAAQTLPSPKENDYEKEALTWLRYFIHMSTGGAFVLFTSFSQ 493 Query: 477 MRDLAEQFR---ATMTLPVLLQGETSKGQLL-QQFVSAGNALLVATSSFWEGVDVRGDTL 532 M+ +A+ R M L +L+QGE + LL Q F N++L T +FW GVDV G++L Sbjct: 494 MKRIADAVRPFMNEMGLKLLVQGEAASSALLLQAFKEDNNSVLFGTDTFWTGVDVPGESL 553 Query: 533 SLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRG 592 VII ++PF PD PL+ AR E GG F + +P+A + L+QG+GRLIR A DRG Sbjct: 554 RNVIIMRIPFAVPDHPLIAARCEHLEKTGGRAFFDFSVPEAQLKLRQGIGRLIRSAKDRG 613 Query: 593 VLVICDNRLVMRPYGATFLASLPPAPRTRD 622 ++V+ D+R+ YGA FL ++P Sbjct: 614 IVVLMDSRVSNTNYGAKFLRAMPEGCEIEH 643 >UniRef50_A5TWB3 ATP-dependent helicase n=14 Tax=Fusobacterium RepID=A5TWB3_FUSNP Length = 822 Score = 508 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 205/692 (29%), Positives = 330/692 (47%), Gaps = 68/692 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + FA DG LAK I GF+ R+ Q +MA + AI + + +++EAGTGTGKT AYL PA+ Sbjct: 124 IKNYFAKDGILAKEIKGFEYRKEQEEMAHYIQDAINEDRKIIIEAGTGTGKTLAYLIPAI 183 Query: 61 RA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 + KKKVII+T + LQ+QL +D+P +K + L+KGRSNYLC + + Sbjct: 184 KWAVANKKKVIIATNTINLQEQLLLKDIPLAKSIIKEDFSYVLVKGRSNYLCKRLFNELS 243 Query: 117 L----AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD 172 + ++ + + W N+T GD + W LV ST + CLG Sbjct: 244 IGRSIDIETFSMEAREQIEYILKWGNKTKTGDKAELPFEVY-PDVWELVQSTTELCLGKK 302 Query: 173 CPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGE----LIPEADVMIFDEAH 228 CP K+CF +K R + M+AD+++ NHH+F AD+ V+ + ++P D++IFDEAH Sbjct: 303 CPYRKECFYMKTRIEKMEADILISNHHVFFADLNVRAETDFDSEYLILPRYDMVIFDEAH 362 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAY------------------RTELKDTQQLQK 270 + +A YF +S L I +L+D+QQ Sbjct: 363 NIESVARSYFSVEVSKISFSRLLNRIYQKKNKRKKEKSALIRVEDTIDEKDLEDSQQYIY 422 Query: 271 CADRLAQSAQDFR----------LQLGEPGYRGNLRELLANPQIQ--RAFLLLDDTLELC 318 + L + + ++ E +R+ L N ++ R L D ++ Sbjct: 423 LLNALKEEISVLQNIGDEYFEEIRKIYETNTEAPIRKSLNNFEMTKSRFLETLRDKKDIF 482 Query: 319 Y-----------------DVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 D K + + Y K + Y YW Sbjct: 483 QSKLADFLTLMMSFNNVIDEEKDKNPEVINFNNHLKMFKTYIDSFKFINSFEDDNYIYWL 542 Query: 362 ECTSR--HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES 419 + S+ + L TPL++A K ++ IF SAT+ N + ++F LG+++ + Sbjct: 543 DINSKRTNVVLTATPLNIAKKLSSVLFDNLDRLIFASATIVANGNFNYFKKSLGLDEEDC 602 Query: 420 LL--LPSPFDYSRQALLCVLRNLPQT-NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 + + SPF+Y Q + + ++ + N + + I+ NG+ F+L TS+ M Sbjct: 603 IEAIIKSPFNYDEQMSVYIPTDIQDSENINAFVTDASKFILDILLKTNGKAFILFTSYTM 662 Query: 477 MRDLAEQFRATM---TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLS 533 + + + V L G+ + QL+++F A N +L T+SFWEGVDV+G+ LS Sbjct: 663 LNQIYYSISKKLIDKGFEVFLHGDKPRSQLIKEFKEAENPILFGTTSFWEGVDVQGENLS 722 Query: 534 LVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGV 593 VII KLPF P DP++ A + GG+ F + QLP+A+I KQGVGRLIR D G Sbjct: 723 NVIITKLPFLVPTDPVVSAISKKIEEDGGNSFTDFQLPEAIIKFKQGVGRLIRKKTDSGN 782 Query: 594 LVICDNRLVMRPYGATFLASLPPAPRTRDIAR 625 + I D+R++ + YG+ F+ +LP + + + Sbjct: 783 IFILDSRILKKRYGSLFINALPSQKNIKILEK 814 >UniRef50_A4J5B5 DNA polymerase III, epsilon subunit n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J5B5_DESRM Length = 930 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 197/693 (28%), Positives = 312/693 (45%), Gaps = 71/693 (10%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA- 62 P+G LA +P F+ R Q M VT+ + + ++VEAGTGTGK+ AYL PA+ Sbjct: 238 VLGPEGILATTLPRFRYRSQQCDMMEQVTKGLNGDKTVLVEAGTGTGKSLAYLVPAIAWA 297 Query: 63 ---KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG 119 ++V+IST + LQ+QL+++D+P ++K +Y A++KGR NY+CL R Sbjct: 298 KQNHERVLISTHTINLQEQLWNKDIPLLAKLPEYEFKSAIMKGRGNYICLRRWHSFMKED 357 Query: 120 GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD- 178 P + + + W QT GD V D + W V S +D CLG+ C +K+ Sbjct: 358 NHTPDEAA-FLAKILIWIYQTNTGDKGELVLNYSDFEYWYRVCSESDGCLGNRCQYFKEK 416 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYF 238 C+ + A++KA AD+V+VNH L L+D ++P +I DEAH L + A+ + Sbjct: 417 CYFMAAKRKAERADIVIVNHSLLLSDANADNM----ILPSYGPLIIDEAHHLENCATDHL 472 Query: 239 GQSLSSRQLLDLAK-------------------DITIAYRTELKDTQQLQKCADRLAQSA 279 G++++ +L + Q+ ++ A + A Sbjct: 473 GRAVTRVGVLRWLAVATKLLSKLEKIAFLTIDGRWEKLLLQSSETKQRTREAATSFFEMA 532 Query: 280 QDFRLQLGEPGY-----------------RGNLRELLANPQIQRAFLLLDDTLELCYDVA 322 + + G + + L L D Sbjct: 533 LSWIKSIDRNGEGRCSMRFDRGGNIDGIPSIPVAVDAELDNLLVNLRTLCQALVKISDQL 592 Query: 323 KLS-------LGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH--FTLALT 373 + G L A L+ + + YW E Sbjct: 593 EEGTVITGGGPGIIRDLAAWASVGQELSDNLEWICRHQEESQVYWVEGGGDSPEVVFRSA 652 Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-----QAESLLLPSPFDY 428 P+ V E + + + TSATLSV+ + H+ + +G++ L SPF+Y Sbjct: 653 PIDVGPLLYEKLFSENRPVVLTSATLSVDGNFKHYINSVGLDFLPQENILEKHLNSPFNY 712 Query: 429 SRQALLCVLRNLPQT---NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR 485 + QA+LCV R++ + +L+ + I A GR +L TSH +R+ ++ + Sbjct: 713 NEQAILCVARDILPPGQVSNKEYHDELSKAIFHISMAAEGRSLVLFTSHRSLRETYQRLK 772 Query: 486 ATMTLPVLL----QGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLP 541 + + + S+ +L++QF+ +L SSFWEGVD+ G+ LS VII KLP Sbjct: 773 DQYENEDICLLGHELDGSRRRLVEQFMEGRRTVLFGASSFWEGVDIPGEALSCVIIVKLP 832 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 F P+ P+ +AR++ +G + F E Q+P AVI KQG GRLIR +DRGV+V+ D RL Sbjct: 833 FAPPNHPVTEARLQKLSRQGRNGFMEHQIPQAVIKFKQGFGRLIRGPEDRGVVVVLDGRL 892 Query: 602 VMRPYGATFLASLPPAPRTRD----IARAVRFL 630 V + YG F SLP A RD I++ RF Sbjct: 893 VEKRYGYKFFNSLPIAQHIRDSWLGISKKARFW 925 >UniRef50_D0LMW6 Helicase c2 n=3 Tax=Haliangium ochraceum DSM 14365 RepID=D0LMW6_HALO1 Length = 650 Score = 505 bits (1301), Expect = e-141, Method: Composition-based stats. Identities = 202/654 (30%), Positives = 308/654 (47%), Gaps = 35/654 (5%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA- 59 + F P+G LA P + PR Q +A AV AI G+ L+ EA TGTGK+ AY PA Sbjct: 5 IDTVFGPEGLLADRFPAYAPRPGQISLARAVDAAIADGEHLLAEAPTGTGKSLAYAVPAS 64 Query: 60 ---LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 +V+++T S LQ+QL ++DLP + L + ALLKG+ NYLCL RL++ Sbjct: 65 YHAAHNGLRVVLATSSINLQEQLAAKDLPFLEGILPWPVRFALLKGKRNYLCLSRLQEAK 124 Query: 117 LAGGDLPVQILSDVIL-LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 G + ++ ++ W+++T GD S D + W +++ + C G DC Sbjct: 125 KDGFVFDISSDIEMKRSIQDWASETKTGDKSELSFEPPD-RIWENYSTSAEECKGRDCRY 183 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMVVKE-SGFGELIPEADVMIFDEAHQLPDIA 234 Y +CF KAR +A AD++V N+HL + ++E +G ++P+ DV + DE H+L DIA Sbjct: 184 YSECFATKARAEAEKADIIVSNYHLLCVHLQLREATGQDLVLPKFDVAVCDEGHKLADIA 243 Query: 235 SQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN 294 +FG ++ L LAK I L ++ + Y+ Sbjct: 244 RDFFGFRVTPGSLRWLAKRIQDRDHASLALALDVES-----RDFFEALHRYQRSDAYKCR 298 Query: 295 LRELLANPQIQRAFLLLDDTLELC----------------YDVAKLSLGRSALLDAAFER 338 LR++ P + LL + + + + A R Sbjct: 299 LRQIEPVPYLNLH-GLLREIADFFGQTRNSAPDPGMDGFDAETQAARIDDLAEAQRTAAR 357 Query: 339 ATLYRTRLKRLKEINQPGYSYWYE-CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSA 397 A L L E+ + Y+ E L P+ V ++ + + S I TSA Sbjct: 358 AALLADNLSAAMELANKDFVYYLEELPKGGVALCGKPIEVNEQLRTAFFDQTQSTIVTSA 417 Query: 398 TLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLR 457 TL+ D + LG+ L++ SPFD+ +Q L V + PG +A + Sbjct: 418 TLTTGDSFDYVRKDLGVPSPRELVVDSPFDFRKQVLFIVPDCVIDPRGPGFPTCVAWTVE 477 Query: 458 PIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVA 517 + GR L TS+ + + VL QG+ + QL+ +F ++L+ Sbjct: 478 QAVRLAGGRTLGLFTSYRNLDTAYARIAD-CGYRVLRQGDKPRTQLVDEFRRDVKSVLLG 536 Query: 518 TSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITL 577 T SFW GVDV+G+ LS V+ID+LPF P+DP++ + + RGG+ F LP A+I Sbjct: 537 TESFWAGVDVQGEALSCVVIDRLPFPPPNDPVI----DALKERGGNSFLSASLPRAIIAF 592 Query: 578 KQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 KQG GRLIR +DDRGV+V+ D RL YG FL SLP ++R + FLA Sbjct: 593 KQGFGRLIRASDDRGVVVVLDERLYTTFYGRAFLRSLPAMRKSRTLEDVQTFLA 646 >UniRef50_D0J804 Helicase c2 n=4 Tax=Comamonadaceae RepID=D0J804_COMTE Length = 699 Score = 505 bits (1300), Expect = e-141, Method: Composition-based stats. Identities = 255/669 (38%), Positives = 365/669 (54%), Gaps = 33/669 (4%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + FA G L+ A P F PR Q +MA+AV QAIE+G LVVEAGTG GKTYAYL PAL Sbjct: 15 VAQVFAQQGALSLAEPAFTPRPGQTRMALAVAQAIEEGGVLVVEAGTGVGKTYAYLVPAL 74 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + ++V++ST +KALQDQL++RDLP + L +A LKGRS+YLC ERLE+ Sbjct: 75 LSGQRVLVSTATKALQDQLFARDLPRLVHGLGLPLRMARLKGRSSYLCTERLERVRQGRT 134 Query: 121 D-LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 Q+L V + W+ T GD++ ++ E S PLV+ST DNC+GSDCP ++ C Sbjct: 135 APQDPQVLRAVADVERWARVTRTGDLAELTALDERSPVMPLVSSTKDNCMGSDCPHWQGC 194 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 V +AR++A++ADVVVVNHHL AD+ V++SG L+P V++ DEAH+L DI Q+ G Sbjct: 195 HVNQARQQALEADVVVVNHHLLFADLDVRDSGMAHLLPNTGVVVIDEAHRLNDIGVQFAG 254 Query: 240 QSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNL---- 295 ++LSS+QL+ A+D + + L Q+ ++ RLQ G+P G L Sbjct: 255 EALSSQQLVGYARDALRMTQEHARGMADWLVLCATLEQAMRELRLQAGKPPVGGRLAWQA 314 Query: 296 --RELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEIN 353 + L + + A + L +L G A L +ER RL R Sbjct: 315 VTPQGLDAVKWRAALVRLGQSLRALLIPLSSLEGAGAELQRLYERGAELLARLARFAAPA 374 Query: 354 QPGYSYWYECTSRHFTLALTPLSVADKFKELMAQK-----------------PGSWIFTS 396 W E +++ + +PLS+A ++ + Q+ +WIFTS Sbjct: 375 DDECVRWLEVGAQYLRMLESPLSIARIMQQRLLQRSLEDAGTDQGEEPDSSRKKAWIFTS 434 Query: 397 ATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAML 456 ATL + L F G+ A+ L + SPFDY RQA + V + ++Q+A ++ Sbjct: 435 ATLGNDAQLSWFVESCGLRGAQVLQVESPFDYHRQAGVYVPQPFAAAGSAQHSQQVAQLV 494 Query: 457 RPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTL----PVLLQGETSKGQLLQQFVSAGN 512 + GR +L T+ + ++ R ++ L VL+QGE K L+Q+F++AG Sbjct: 495 LDAAQRIGGRTLVLTTTLKALHAISASLRTSLGLFADLDVLVQGEAPKLALIQRFMAAGA 554 Query: 513 AL-----LVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDE 567 LVA+++FWEGVD+ GD L LV+IDKLPF PDDPL++AR G F + Sbjct: 555 VAGRGAVLVASATFWEGVDLPGDMLQLVVIDKLPFPPPDDPLVEARSRLLESVGRGAFHD 614 Query: 568 VQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAV 627 LP+A + LKQG GRLIR DRGVLVICD+RL+ YGA +++LPP Sbjct: 615 YMLPEAALALKQGAGRLIRSEADRGVLVICDSRLMTMGYGAELMSALPPMRVLGSQPEFE 674 Query: 628 RFLAIPSSR 636 L S++ Sbjct: 675 AALEQLSAK 683 >UniRef50_D2LTU8 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LTU8_BACS4 Length = 922 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 180/674 (26%), Positives = 307/674 (45%), Gaps = 66/674 (9%) Query: 12 AKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVI 67 + G++ R Q +M + + +E+ ++EAGTGTGKT AYL PA +KKVI Sbjct: 252 QNVMEGYEVRAGQTEMMTYIYETMEERAFGLIEAGTGTGKTLAYLLPAAFLAKEKQKKVI 311 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 IST + LQ+QL +++PT+ + L + +V +LKGRS+YLCL++ + + Sbjct: 312 ISTQTIQLQEQLIKKEVPTLERLLPFPIHVVILKGRSHYLCLQKFARLLQEDHNDAYDRT 371 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 + W +T GD+ + ++ W + S +C S C + CF AR Sbjct: 372 VSKAQILVWLLETKTGDVEELSLASHSNRFWNDIASDAYSCNSSKCAWFSRCFYQHARND 431 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 A AD+++ NH L LAD++ +LIP+ D I DEAH L D A++ FGQ L L Sbjct: 432 ARKADLIITNHSLILADILTS----NQLIPKYDYAILDEAHHLEDTATEQFGQQLDYLSL 487 Query: 248 LDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQR- 306 L + + L++ D + +D ++ E G + + Sbjct: 488 THLINRM-----GSKRGEGLLRQVYDEIYNDYRDTVEKIEETGTKVKFEWYELFLLLNDY 542 Query: 307 -----------------------AFLLLDDTLEL----CYDVAKLSLGRSALLD------ 333 ++ ++++ + +L+ Sbjct: 543 VINSNTNFNERGRATVKINAKENSWYVIEEAARRCKLYLEEWLANINRIVDILETIESNY 602 Query: 334 -----AAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFT----LALTPLSVADKFKEL 384 + +R + L +L YW E ++ + P++V++ +L Sbjct: 603 NDAFTSFIDRVEGVYSSLIKLLLEQDDHMIYWIEADTKGPKQAIYIKGRPINVSESLADL 662 Query: 385 MAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPSPFDYSRQALLCVLRNLP- 441 QK S I TSATL+VN+ ++ RLG+ ++ + SPF + +Q L V ++P Sbjct: 663 FFQKKDSVILTSATLTVNNKFNYMIRRLGLSDFYVKTKHIDSPFHWDKQVKLMVPTDMPL 722 Query: 442 --QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT--LPVLLQG- 496 + A + I E G+ +L TS+ M+++ + + ++ QG Sbjct: 723 IQDAGEKAYAEATVMQIYRIAEITKGKMLVLFTSYDMLKNCYNYLKEMLDDEYAIIAQGV 782 Query: 497 -ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARME 555 ++ +L + F A+L+ TSSFWEGVD+ G LS+++I +LPFT PDDP+ +A+ Sbjct: 783 HSGNRTKLTKNFQQFNQAILLGTSSFWEGVDIPGSDLSIIVIVRLPFTPPDDPVFQAKST 842 Query: 556 DCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 + + G +PF ++ LP A++ KQG GRL+R DRG +++ D R+ YG F+ SLP Sbjct: 843 EMKREGLNPFMKLALPQAILRFKQGFGRLVRTTHDRGAVIVLDRRITNTKYGKLFIKSLP 902 Query: 616 PAPRTR-DIARAVR 628 P + Sbjct: 903 EIPLVEKSLDELED 916 >UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helicase n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EC75 Length = 958 Score = 501 bits (1290), Expect = e-140, Method: Composition-based stats. Identities = 198/704 (28%), Positives = 319/704 (45%), Gaps = 82/704 (11%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKK 65 +L + +P ++ R+ Q M V QA++ + L++EAGTGTGK+ YL P++ ++K Sbjct: 253 RLKETLPHYESRDAQDMMFQEVMQALDDNKHLLIEAGTGTGKSLGYLLPSIYQSVKQEQK 312 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG-DLPV 124 V++ST + LQ+QL RD+P +++ + + A+ KGR +YLCL + E + P Sbjct: 313 VMVSTHTINLQEQLRDRDIPLLTQVVPFPFKAAIFKGRGHYLCLRKFEHKINRRDFHSPK 372 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + + + W QT +GD W ++S +D+CLG CP ++ C+ +A Sbjct: 373 EDVITAAQMLVWLTQTENGDDEELNLGGRGGDFWETISSDSDSCLGRACPWFRKCYYHRA 432 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 + +A ADVV+ NH D+ +L+P + ++ DEAH L D+A ++ G + Sbjct: 433 KHEAGIADVVITNHSKLFTDVKANH----QLLPSYERLVIDEAHHLEDVAGKHLGLQMKY 488 Query: 245 ----RQLLDLAKD-----------------------ITIAYRTELKDTQQLQKCADRLAQ 277 L L KD + D +++ DRL+ Sbjct: 489 FSVVHTLTRLYKDSRSGQLPALRQLLQASPHEKAVEWSSVIDRLYPDLITVKENWDRLSD 548 Query: 278 SAQDFRLQLGEPG------YRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSAL 331 + G+ + L L L DV + A Sbjct: 549 QLFGLLPERGDASPGDAGQFSLRLSPLKKPKDWDSMAELEHQIHLTLGDVVRKGDKLIAE 608 Query: 332 ----------------LDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR----HFTLA 371 L F+ +R L+ +N G YW E L Sbjct: 609 MKEDLDDYSADSLLTDLSGLFKDLAAHREDLRSFMALNDEGTVYWMEANGNFRSKSLQLY 668 Query: 372 LTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA------ESLLLPSP 425 P+ V+ KEL K S I TSATLSV+ LG+++A ++ LPSP Sbjct: 669 AVPVDVSSHLKELFFDKKQSVILTSATLSVDKSFQFMIENLGLQEAAEAGNLNTVQLPSP 728 Query: 426 FDYSRQALLCVLRNLPQT----NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 F+Y QALL V R+ P L L A +GR +L TS+ M+R + Sbjct: 729 FNYREQALLVVPRDFPSVKGSVGDALFVNTLVKSLADTAVATHGRMLVLFTSYRMLRQVH 788 Query: 482 EQFRATM---TLPVLLQGET--SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 E + + + VL QG S+ +L+++F + ++L+ TSSFWEGVD+ G+ L+ + Sbjct: 789 EPLKEALASSDITVLGQGMDGTSRTKLIRRFQDSSASVLLGTSSFWEGVDIPGEALTCLA 848 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 I +LPF P+ PL++A+ E + + +PF ++ +P AVI KQG GRL+R A D+G++++ Sbjct: 849 IVRLPFQPPNHPLVEAKSELLQQQKKNPFMKLSVPQAVIRFKQGFGRLVRTAQDKGIVIV 908 Query: 597 CDNRLVMRPYGATFLASLP-----PAPRTRDIARAVRFLAIPSS 635 D R++ YG FL SLP P + R +L +S Sbjct: 909 YDTRVIESYYGKYFLYSLPGPKMEHMPTEGIVPRISEWLQEEAS 952 >UniRef50_A5D2F3 Putative uncharacterized protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D2F3_PELTS Length = 937 Score = 500 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 192/674 (28%), Positives = 312/674 (46%), Gaps = 70/674 (10%) Query: 6 APDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA--- 62 DG LA +PG++ R Q++M VT+A+ + + L++EAGTG GK+ AYL P++ Sbjct: 248 GKDGPLADVVPGYEYRPQQQEMIRLVTRALNEEKYLLMEAGTGVGKSLAYLIPSVLWSCL 307 Query: 63 -KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 +++V+++T + LQ+QL+ +D+P +K +L+KGR NY+CL R Sbjct: 308 NRQRVLVATRTINLQEQLWHKDIPLAAKVTGRPFKASLVKGRQNYICLRRWFSVLENPHQ 367 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 Q + +W T GD S + + W + +D C+GS C K CFV Sbjct: 368 --PQEAGFFARVLTWLTVTQTGDKSELNVIPAEEDFWLSICGESDGCMGSRCRYLKYCFV 425 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS 241 A+++A ++++++ NH L +D+ V+ ++P + +I DEAH L + A+ + G+ Sbjct: 426 NAAKREAEESNLIITNHSLLFSDVKVENR----ILPAYEALIIDEAHHLEESATVHLGRQ 481 Query: 242 LSSRQLLDL--------------------------AKDITIAYRTELKDTQQLQKCADRL 275 ++ L KD + + L Sbjct: 482 VTQGALNRWLSAAGKALFRLAEKVPPEDVEKWSETIKDSREVLLEAQGNVHFFFQQLGEL 541 Query: 276 AQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLL-----------------LDDTLELC 318 A + + G R + ++LAN + LE+ Sbjct: 542 ASALSNDEGDSGRITLRLSNEKMLANTSYNAVLECGTRCIELFLSLNGKIGYIAKVLEMW 601 Query: 319 YDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYE-----CTSRHFTLALT 373 ++ + L + L+ + E + G+ YW E +++ L Sbjct: 602 GITEEVWAEAARDLFQIYNSGQTIIDDLQFILEGREQGFVYWAEFEYSRRGFKNYALYAA 661 Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA-----ESLLLPSPFDY 428 P++V E + G+ IF+SAT+SVN HF R G+ SPF + Sbjct: 662 PVNVGTVLYEQFFKNRGTVIFSSATISVNGTFDHFIDRNGLNNFPPEKIIKASFDSPFAF 721 Query: 429 SRQALLCVLRNLPQTN---QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR 485 RQALLC+ +LP + L + ++EA GR +L TSH ++R+ + + Sbjct: 722 ERQALLCICHDLPVQGAVAEEVYLDNLEEAILKLLEAVGGRTLVLFTSHKVLRETYRRLK 781 Query: 486 ATM---TLPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLP 541 M + +L G + ++ LL++F S +L SSFWEGVDV G+ LS VI+ KLP Sbjct: 782 PRMEARGICILGHGIDGNRLNLLEEFKSTAQTVLFGASSFWEGVDVPGEALSCVIMVKLP 841 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 F SP P+++AR+ED R D F ++ +P AVI KQG GRLIR DRG +++ D R+ Sbjct: 842 FVSPSVPVIEARLEDLARRKRDGFRDLSVPQAVIRFKQGFGRLIRSGSDRGCVIVLDRRI 901 Query: 602 VMRPYGATFLASLP 615 + R YG FL SLP Sbjct: 902 LSRSYGRRFLNSLP 915 >UniRef50_A7HIV0 Helicase c2 n=4 Tax=Anaeromyxobacter RepID=A7HIV0_ANADF Length = 635 Score = 500 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 215/630 (34%), Positives = 325/630 (51%), Gaps = 40/630 (6%) Query: 35 IEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYT 94 + + + LV EAGTGTGKT AYL PA + ++VI+ST +K LQ+Q++ +D+P + + Sbjct: 1 MSERRYLVAEAGTGTGKTLAYLVPAALSGRRVIVSTATKTLQEQIWGKDIPLLRERCGVE 60 Query: 95 GNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAED 154 A LKGRSNY CL R + A A + + + +W+ T GD S + Sbjct: 61 FAAAYLKGRSNYFCLARGAEFARAPTFAAREEAALWPRIEAWARATETGDRSEIDL-PDQ 119 Query: 155 SQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG- 213 W +++T + C G +C Y+DCFV +AR A +DV++VNHHLF AD+ ++ S G Sbjct: 120 FHTWKDLSATAETCAGRECERYEDCFVTRARALAGQSDVLLVNHHLFFADLAMRTSRAGV 179 Query: 214 ELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCAD 273 E++PE DV++FDEAH + ++A++YFG +SS ++ +L +D A +++ Sbjct: 180 EILPEYDVVVFDEAHAIEEVATEYFGLQISSYRVEELGRDALRAVGDRPDLASMMREATG 239 Query: 274 RLAQSAQDFRLQL------------------------------GEPGYRGNLRELLANPQ 303 L ++ + F L + R L + P Sbjct: 240 ELRRAGERFFQALADGLHASGAGAARGWGARAGGRGRGPRRREEDESVRAPLTSEVLEP- 298 Query: 304 IQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYEC 363 +R LD LE ++ + L RA R L + + +P Y+ E Sbjct: 299 CERDQARLDAALEALRELLADAEA--PPLAQIARRAGELRVELAAVTAMKEPSRVYFAEV 356 Query: 364 TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE---QAESL 420 R L P+ VA++ + + ++ + IFTSATL+ +F ++G+ + Sbjct: 357 RGRGVFLRAAPIDVAEELQARLYRRTDTVIFTSATLAAQGRFDYFRRQVGLAPEFDVDEA 416 Query: 421 LLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL 480 P PFD+ RQA + +P+ N PG A +R + E GR F+LCTS+ M L Sbjct: 417 RFPGPFDFPRQAAIVTPPTVPEPNAPGFLDAAAGTIRALAEVTGGRAFVLCTSNRNMHAL 476 Query: 481 AEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL 540 R + VLLQGE K +LL+ F + ++L AT+SFWEGVDV GD LSLV+ID+L Sbjct: 477 HGALRD-LPYQVLLQGERPKARLLEAFRA-EPSVLFATASFWEGVDVPGDALSLVVIDRL 534 Query: 541 PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR 600 PF P DP++ AR+ G D F E+Q+P A + L+QG GRL+R DRG++ I D R Sbjct: 535 PFAPPGDPVVAARLRALEAEGRDGFSELQVPAAALALRQGFGRLVRTRGDRGLVAILDRR 594 Query: 601 LVMRPYGATFLASLPPAPRTRDIARAVRFL 630 LV + YG FLA+LP P R +A A + Sbjct: 595 LVTKGYGRAFLATLPRCPVLRSVAEARSWW 624 >UniRef50_A5UUI5 DNA polymerase III, epsilon subunit n=6 Tax=Chloroflexi (class) RepID=A5UUI5_ROSS1 Length = 956 Score = 499 bits (1285), Expect = e-139, Method: Composition-based stats. Identities = 219/706 (31%), Positives = 332/706 (47%), Gaps = 84/706 (11%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + F+PDG L +A G++ R+ Q +M+ AV +G L+ EAGTGTGK AYL PA Sbjct: 236 IRRFFSPDGALGRAFAGYEQRDQQVRMSEAVADTFNQGGALIAEAGTGTGKGLAYLVPAA 295 Query: 61 RA----KKKVIISTGSKALQDQLYSRDLPTVSKALK-----YTGNVALLKGRSNYLCLER 111 ++V+IST + LQDQL+ +D+P + + + ALLKGRSNYLCL+R Sbjct: 296 LHAARRGERVVISTNTINLQDQLFFKDIPALQQVMSNGADEAPFTAALLKGRSNYLCLKR 355 Query: 112 LEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGS 171 + + + ++ ++ W T GD + ++ +W +++ + C G Sbjct: 356 YKDLRRDQRLMSDDV-RALLKVQLWLPTTESGDRAELPLHEGENASWNRMSAAWEQCTGP 414 Query: 172 DCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLP 231 C ++ CF KARK+A A +V+VNH L +AD+ V+ ++IP D +I DEAH L Sbjct: 415 RCSEFQRCFFFKARKQAEAAHLVIVNHALLMADLAVE----NDVIPPYDYLIIDEAHNLE 470 Query: 232 DIASQYFGQSLSSRQLLDLAKDITIAYR---------------TELKDTQQLQKCADRLA 276 D+A+ ++ LL DI + E T+ AD +A Sbjct: 471 DVATDQLSFNVDREGLLAFLDDIFTEGQAQVVGGLLSELPNHFRESMATRTDIDRADAIA 530 Query: 277 QSAQDFRLQLGEPGY-------------------------RGNLRELLANPQIQRAFLLL 311 + + + + Y +LR + +++RA+ L Sbjct: 531 DTLRPAVARARDAVYGCFNVLMTFIKREAELTAYDSRLRITDSLRRKPSWAEVERAWDAL 590 Query: 312 DDTLELCYDVAKLSLGRSALL---------------DAAFERATLYRTRLKRLKEINQPG 356 L + L A AT R + + Sbjct: 591 SVALHAVGEGLGRLETLLIDLKDAELLEYDALMLRVQALRRYATDVRVNIGHILTGGAEE 650 Query: 357 YSYWY--ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 W + TL+ PLSVAD + + + + I TSATLSV + R+G+ Sbjct: 651 KVTWLTHDRMRDTLTLSAAPLSVADVLRTNLFEAKTATILTSATLSVGGNFAFIRERIGL 710 Query: 415 EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSH 474 + AE L L SPFDY+RQALL + +++P+ NQ G R L + + A GR +L T+ Sbjct: 711 DHAEELTLDSPFDYTRQALLYIPQDIPEPNQNGYQRALEQAIIDLARATGGRMLVLFTAT 770 Query: 475 AMMRDLAEQFRATM---TLPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGD 530 +R + + + VL QG + S+ LL++F +L+ TSSFWEGVDV GD Sbjct: 771 NALRQTYRAIQEPLEDAGIAVLGQGIDGSRRSLLERFKEFPGTVLLGTSSFWEGVDVVGD 830 Query: 531 TLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADD 590 LS+++I KLPF+ P DP+ AR E DPF++ +P +++ KQG GRLIR +D Sbjct: 831 ALSVLVIAKLPFSVPTDPIFAARSEQFD----DPFNQYAVPQSILRFKQGFGRLIRSRED 886 Query: 591 RGVLVICDNRLVMRPYGATFLASLPP-----APRTRDIARAVRFLA 631 RGV+ + D RL+ + YG FL SLP P R A RFLA Sbjct: 887 RGVVAVLDRRLLTKKYGQMFLESLPHTTVRSGPLQRLPDLAKRFLA 932 >UniRef50_A1W6Z0 Helicase c2 n=5 Tax=Comamonadaceae RepID=A1W6Z0_ACISJ Length = 688 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 243/661 (36%), Positives = 334/661 (50%), Gaps = 40/661 (6%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK 63 FAPDG LA+ P + R Q MA+AV QAI + LVVEAGTG GKT+AYL PAL + Sbjct: 10 VFAPDGPLARVRPHLRSRPGQAAMALAVAQAINARESLVVEAGTGIGKTFAYLVPALLSG 69 Query: 64 KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP 123 ++V+IST +K LQDQL +RDLP + +AL VA LKGR+NYLCL RLEQ G Sbjct: 70 ERVLISTATKTLQDQLLTRDLPLLQQALALPLRVAALKGRANYLCLYRLEQARRDGEGHD 129 Query: 124 VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVK 183 + D+ + W+ T GD++ + E S AW VTST DNCLGS CP + C V + Sbjct: 130 EAVAHDLACVERWAQSTRSGDLAEVPGLDEYSAAWRQVTSTVDNCLGSMCPRLRQCHVYR 189 Query: 184 ARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLS 243 AR A ADV+++NHHLF AD+ + +G +L+P+ V++FDEAH+L +IA+Q+ G +S Sbjct: 190 ARHDAQAADVLIINHHLFFADLGAQGAGAAQLLPDTGVVVFDEAHRLAEIAAQFLGTHVS 249 Query: 244 SRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLG----------EPGYRG 293 + QLL L +D+ A + Q L Q A RL + + G Sbjct: 250 TSQLLQLGQDVVAAGARHARGAADWQGLLQHLRQCAHALRLAVAPGEDADAAGSRIAWTG 309 Query: 294 NLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEIN 353 E L A L + L R R+ Sbjct: 310 VTPEALDPSAWDGALEGAVAALRAVLAALDGVAQHAPDLAHLHSRTVALLERVLHFCSEA 369 Query: 354 QPGYSYWYECTSRHFTLALTPLSVADKFKELM------------------AQKPGSWIFT 395 G W E ++ + TPL VA + L A P SWI+T Sbjct: 370 DAGTVRWVE-SAGALRMVETPLDVAGALRTLWKGKPPTQGAWDESDEPPAASAPRSWIYT 428 Query: 396 SATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAM 455 SATL DL FT G+E A +L +PSPFDY+RQA L V LP + G + QLA Sbjct: 429 SATLGDGKDLRWFTDACGLEGARTLQVPSPFDYARQAALYVPPALPLPSDAGHSVQLARW 488 Query: 456 LRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM----TLPVLLQGETSKGQLLQQFV--- 508 + + G +L TS + +A++ + VL+QG S+ +++++F Sbjct: 489 VGDAVARLGGHTLVLTTSLRALAVIADELCRRFAPGGGIEVLVQGHASRSRMVERFRAQL 548 Query: 509 ----SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDP 564 +LV +SFWEG+DV G+ L +V+IDKLPF +P DP +A+ +GG+ Sbjct: 549 DASGRPAGHVLVGAASFWEGIDVPGEALQMVVIDKLPFPAPGDPWEQAQARRLADQGGNV 608 Query: 565 FDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA 624 F LP A + LKQG GRLIR+ +D G+LVI D RL+ + YG L +L P R Sbjct: 609 FRRHALPSAAVALKQGAGRLIRNENDHGILVIADTRLLHKGYGKPLLRALAPMRRLHTQE 668 Query: 625 R 625 Sbjct: 669 E 669 >UniRef50_B3DY63 Rad3-related DNA helicase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DY63_METI4 Length = 673 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 202/649 (31%), Positives = 319/649 (49%), Gaps = 35/649 (5%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + F+P G LA+A ++ R Q +MA + ++EK + L++EA TGTGK+ AYL P+L Sbjct: 26 VAAFFSPSGPLAQA-AHYEYRPQQEKMAEEIYSSLEKKEHLIIEAPTGTGKSLAYLVPSL 84 Query: 61 RAKKKV----IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 K+ +IST + LQDQL +D+P + K + LLKGR NY C +RLE+ Sbjct: 85 LYCKQFSQRGVISTHTLNLQDQLLHKDIPLLKKTFFQDFSAVLLKGRQNYFCPKRLEKVM 144 Query: 117 LAGGDLPVQ-ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 DL ++D++ + WS +T GD+ + + W + S C C Sbjct: 145 KHASDLFSHFEINDLMRIYDWSVRTTTGDVEELDPLP-SASLWSQICSEPGLCNSRSCSH 203 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLA---DMVVKESGFGELIP-EADVMIFDEAHQLP 231 CF K R+K+ +D+ +VNH + + V E +P +IFDEAH L Sbjct: 204 NPRCFYQKFREKSAQSDLTIVNHAFYFSLLGQSVDPEFQKETGLPFGESFVIFDEAHTLE 263 Query: 232 DIASQYFGQSLSSRQLLD-LAKDITIAYRT----ELKDTQQLQKCADRLAQSAQDFRLQL 286 +AS G S+S +LL+ LA+ + R LK+++ L K + Q+ Q L Sbjct: 264 KVASIQLGFSVSKYRLLNNLARLFNPSTRKGLLLCLKESKLLTKNIEAYEQA-QSLFQAL 322 Query: 287 GEPGYRGNLRE------LLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERAT 340 G + +L E L + L + + + + + E+ + Sbjct: 323 GRMLVQNSLSEQRILAPLSLPHPLPDTLERLVKEISSVLINLEDKEIKEEIEN-CLEKIS 381 Query: 341 LYRTRLKRLKEINQPGYSYWYECTS-----RHFTLALTPLSVADKFKELMAQKPGSWIFT 395 L R L E+ P + YW E + + L PL V + L+ +K S I T Sbjct: 382 LERRALLEFVEMKIPEHVYWVELSDPSNPEGNVQLLAAPLEVGPLLQTLLYEKEISVIMT 441 Query: 396 SATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTN-QPGSARQLAA 454 SATL V +F R+G+ + + L SPFDY RQ + + +N+P + P LA Sbjct: 442 SATLQVASHFSYFQDRVGLY-SRTFQLQSPFDYGRQMKIIIPKNMPDPSQSPQYEEALAY 500 Query: 455 MLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQ-GETSKGQLLQQFVSA 510 + ++ G +L T+ + + E + P +Q G+T + +LL F A Sbjct: 501 WIERLVRYTKGSALVLFTNRKTLLTMTEALGQKLTALNFPFFVQDGKTPRHKLLNLFKEA 560 Query: 511 GNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQL 570 +A+L SFW+G+DV G++L VII KLPF++PD P ++A+ E +G + F L Sbjct: 561 QHAVLFGMDSFWQGIDVPGESLRNVIITKLPFSAPDHPQVQAKCEKLEQQGKNAFTHYSL 620 Query: 571 PDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPR 619 P+AV+ +QGVGRLIR +D+G++ I D+R++ + YG FL S+PPAP Sbjct: 621 PEAVLKFRQGVGRLIRSKEDKGIIAILDSRILSKSYGKVFLNSIPPAPI 669 >UniRef50_D2QZI1 Helicase c2 n=2 Tax=Planctomycetaceae RepID=D2QZI1_9PLAN Length = 666 Score = 498 bits (1283), Expect = e-139, Method: Composition-based stats. Identities = 210/664 (31%), Positives = 326/664 (49%), Gaps = 46/664 (6%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 + P G++A +PG++ R Q ++ + +A+ G+ LV EAGTG GK++AYL PA+ Sbjct: 4 EEILGPAGRIAARLPGYEHRPQQLDLSGGIAKALAAGRHLVAEAGTGVGKSFAYLVPAIL 63 Query: 62 A-------------------KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKG 102 +K+++IST + +LQ+QL ++DLP + + L+KG Sbjct: 64 HATSDQAENAQASEGDEEGPRKRIVISTHTISLQEQLLAKDLPLLRSVIPREFTAVLVKG 123 Query: 103 RSNYLCLERLEQQALAGGDL--PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL 160 R NY+ L RL+ A L + V L +WS +T G +S ++ S W Sbjct: 124 RGNYVSLRRLQYAAERARTLFSTEEEFEQVRDLVAWSKETGGGSLSDM-TIKPKSTVWDE 182 Query: 161 VTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD 220 V S + NCLG +CP Y +CF +AR++ A ++VVNH LF +D+ ++ G ++P+ D Sbjct: 183 VASDSGNCLGRNCPTYSECFYYRARRRVHHAQILVVNHALFFSDLALRRVG-ASILPDYD 241 Query: 221 VMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITI--------AYRTELKDTQQLQKCA 272 I DEAH + +A + G S++S Q+ L + R Q + +C Sbjct: 242 AAILDEAHTIEQVAGDHLGLSITSGQIQYLLSRLYNDRTNKGLLVSRKLTTAQQLVMQCY 301 Query: 273 DRLAQSAQDFRLQLGEPGYR-GNLRELLA-NPQIQRAFLLLDDTLELCYDVAKLSLGRSA 330 R D + ++ G +RE + + + L L + C + R Sbjct: 302 LRADDFFHDCATLAQQRDHKNGRIREPDQVDNLLSPSLLKLSREVRRCGEQIDDESERQN 361 Query: 331 LLDAAFERATLYRTRLKRLKEINQPGYSYWYEC-----TSRHFTLALTPLSVADKFKELM 385 L +A +R L + + G YW L+ P+ V +E + Sbjct: 362 FL-SAADRLQLISGEISHWISQDTAGSVYWISQQASRAGKPRVELSAAPIDVGPALREHL 420 Query: 386 AQKPGSWIFTSATLSVN-DDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTN 444 +K S I TSATL+ ++ SR+G+ Q++++ + SPF+Y QA L ++ LP Sbjct: 421 FEKTRSVILTSATLATGKGSFDYYKSRIGLTQSDAIRVGSPFNYREQAQLILVSGLPDPG 480 Query: 445 QPG--SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQ-GET 498 A ++ IE +G F+L TS+A + A A L + Q G Sbjct: 481 SEKDKFEVAAAEQMKRYIERTDGHAFVLFTSYAHLERTASLLTRFLAENNLALYSQAGHE 540 Query: 499 SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCR 558 + Q+L +F +L+ T SFW+GVDV GD L VII KLPF+ PD PLL+AR+E R Sbjct: 541 PRTQMLARFKENPRGVLLGTDSFWQGVDVPGDALQNVIIPKLPFSVPDQPLLEARLEAIR 600 Query: 559 LRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 GG+PF + QLP+AVI L+QG GRLIR + D G++VI D R+ + YG TFL SLP Sbjct: 601 ESGGNPFRDYQLPEAVIKLRQGFGRLIRSSRDSGMVVILDPRMQTKAYGRTFLESLPECE 660 Query: 619 RTRD 622 + Sbjct: 661 LIHE 664 >UniRef50_Q6MEU9 Putative ATP-dependent DNA helicase dinG n=2 Tax=Parachlamydiaceae RepID=Q6MEU9_PARUW Length = 753 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 213/711 (29%), Positives = 315/711 (44%), Gaps = 92/711 (12%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + PDG LA ++ GF+ R Q+QM + +A ++EAGTG GK+ AYL PAL Sbjct: 16 ILSLLKPDGLLANSLKGFEFRPQQQQMMTNIIEAYNNDSIALIEAGTGIGKSLAYLIPAL 75 Query: 61 RA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 ++ +IST + LQ+QL S+D+P + AL L+KG NYLC+ +LE Sbjct: 76 IWAARFNERTVISTNTITLQEQLLSKDIPNLLDALDLNLKAVLVKGMHNYLCIRKLEDVQ 135 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 + + + ++ + +W QTVDG S+ A W V + N+ C +CP Y Sbjct: 136 MEMSIVSSEEAQEIEKIEAWRQQTVDGSRSSLS-FAPTHSVWEKVGAENEACSHHECPHY 194 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKE----SGFGELIPEADVMIFDEAHQLPD 232 + CF KAR++A DA +++VNHHL AD++ + ++P +I DEAH + D Sbjct: 195 QQCFFFKARRQAQDAHILIVNHHLLFADLMRRADTANYSETSILPTYRRIILDEAHHVED 254 Query: 233 IASQYFGQSLSSRQLLDLAKD-------ITIAYRTELKDTQQL----------------- 268 IA++YF L +L+ LK+ QL Sbjct: 255 IATEYFASHLHRIELMRTMGRLGSERHSQQPGKLPILKEKLQLLYNKTPPREISQIVMRL 314 Query: 269 -----------QKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLL------- 310 + ++ + F + P R E+ N Q R Sbjct: 315 TIDLPALRHVIHEQINQTFDAFAHFIEAIKNPASRLLGEEVSLNEQKLRILNEHMNHTKW 374 Query: 311 ------------------------LDDTLELCYDVAKLSLGRSALLD--AAFERATLYRT 344 L+ L+L + +S LD R + Sbjct: 375 KEEIHPSASQLIDSLKNYRLNITNLEAELKLIENERLQEQTKSIRLDIQGLANRLETSIS 434 Query: 345 RLK-RLKEINQPGYSYWYECTS----RHFTLALTPLSVADKFKELMAQKPGSWIFTSATL 399 L + + P W E + L L ++ E + K + I SATL Sbjct: 435 LLNHFILPPSSPNKVRWIEAHKLKSLINVHLVDADLDISKSLAEFVFSKFPTVILCSATL 494 Query: 400 SVNDDLHHFTSRLGIEQ-------AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQL 452 + N RLG+ E + SPFDY +QALL V ++P + P Sbjct: 495 TSNQQFQFIRKRLGLTDKHLPYRQIEEYIYDSPFDYHKQALLAVPTDMPPPSHPDFNWIA 554 Query: 453 AAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT---LPVLLQGETSKGQLLQQFVS 509 + I+A+ G+ F+L TS++M++ AE+ A M + QGE ++ LL +F + Sbjct: 555 FENIWKAIQASRGQAFVLFTSYSMLQQCAEKLSARMHEHAYVLFKQGEEARQTLLHKFKT 614 Query: 510 AGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQ 569 A+L T SFWEGVDV GD L VII KLPF P +PL++AR E +GG+PF E Sbjct: 615 TDRAILFGTDSFWEGVDVAGDALRCVIIVKLPFRVPTEPLIQARTEAIIEKGGEPFFEYS 674 Query: 570 LPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 +P AV+ KQG GRLIR+ DRG +V D RLV + YG FL SLP + Sbjct: 675 VPQAVVKFKQGFGRLIRNQWDRGCIVCLDTRLVTKGYGKQFLNSLPACEKV 725 >UniRef50_B9XI74 Helicase c2 n=1 Tax=bacterium Ellin514 RepID=B9XI74_9BACT Length = 719 Score = 498 bits (1281), Expect = e-139, Method: Composition-based stats. Identities = 209/701 (29%), Positives = 336/701 (47%), Gaps = 86/701 (12%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + F+P G L++A F+ R Q++MAVAV +A+E LVVEAGTG GK+ AYL P Sbjct: 20 VESIFSPTGILSRA-SNFEYRPQQQRMAVAVAKALENKDHLVVEAGTGVGKSLAYLIPSI 78 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 A+ + KK +IST + LQ+QL +DLP + + L + +LKGR NYLC RL + Sbjct: 79 LYAIASSKKAVISTHTINLQEQLTQKDLPMLEQVLPIKFSYTMLKGRGNYLCSRRLFKAM 138 Query: 117 LAGGDL-PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 L ++ + WS T DG +S + D + W V S C C Sbjct: 139 QQSNSLFTSPEEEELKRIHEWSKTTKDGSLSD-FEIEPDPKVWSHVCSERGLCSPKMCGH 197 Query: 176 -------YKDCFVVKARKKAMDADVVVVNHHLFLADM-VVKESGFGELIPEADVMIFDEA 227 CF +AR++ + ADV+VVNH LF + ++E G ++ + D ++FDEA Sbjct: 198 QSEFGQQNGVCFFQRARQRILSADVLVVNHTLFFTLLGGIEEENEGGVLFKNDFVVFDEA 257 Query: 228 HQLPDIASQYFGQSLSSRQLLDLAK-----DITIAYRTELKDTQQLQKCADRLAQSAQDF 282 HQ+ +AS++ G S+SS Q+ + L+ + + AD L ++ F Sbjct: 258 HQMESVASKHIGLSVSSGQMRYALQRLWNPRTEKGILATLRQGKTVTLVADLLREADHFF 317 Query: 283 -------------------------RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLEL 317 R + R EL+ + + L + + Sbjct: 318 GEVETACEELRKAQSDQNAGESNAARAKRAWTELRIRKPELVQD-NVTLPIQRLREAVSE 376 Query: 318 CYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTS---RHFTLALTP 374 + + L++ R R + ++ Y YW E + ++F L P Sbjct: 377 LIKMTEDKDTGQELVE-CNRRLADLREEVAMFLNQSEEDYVYWVERSGKTQKNFALNAAP 435 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDD------------------------------ 404 + VA+ + + S I TSATLSV++ Sbjct: 436 VDVAEFLRRRLFGCDTSIIMTSATLSVSEKDLESAKAKAAAAEKKSEPERPARFQKRNEF 495 Query: 405 --LHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEA 462 L++F R+G ++A L + +PF Y Q L V+ +P G L + I+ Sbjct: 496 PGLNYFVRRVGAQEATLLQVGTPFHYEEQMKLFVVNKMPDPRDQGYRDALIHWIEHFIKM 555 Query: 463 NNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQGET-SKGQLLQQFVSAGNALLVAT 518 +G+ F+L TS+++M+D+A++ + + L V +QG + +L++F +++L T Sbjct: 556 THGKAFVLFTSYSLMQDVADRMQPFFDKLKLEVYVQGTGTPRSVMLEKFKENVDSVLFGT 615 Query: 519 SSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLK 578 SFW+GVDV G+ LS VII +LPF PD PL++AR+E+ GG+PF E LP+A++ + Sbjct: 616 DSFWQGVDVPGEALSNVIITRLPFAVPDHPLIEARIENIEAHGGNPFSEFSLPEAILKFR 675 Query: 579 QGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPR 619 QGVGRLIR D+G++V+ DNR++++ YG FL ++P P Sbjct: 676 QGVGRLIRTKTDKGIVVVLDNRVLVKRYGQAFLDAMPKCPV 716 >UniRef50_B2URD7 Helicase c2 n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2URD7_AKKM8 Length = 661 Score = 496 bits (1278), Expect = e-139, Method: Composition-based stats. Identities = 213/643 (33%), Positives = 330/643 (51%), Gaps = 29/643 (4%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA- 59 + FAPDG ++A F+ R Q+ MA+AV +A++ PL+VEAGTG GK+ YL PA Sbjct: 19 VHRAFAPDGLFSRA-RDFEYRAEQQSMALAVARALQVDAPLLVEAGTGVGKSLGYLLPAV 77 Query: 60 ---LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 L +K +IST + LQ+QL+++D+P + AL + ALLKGR NYLC RL + Sbjct: 78 KFALDFDRKAVISTHTINLQEQLFNKDIPLLRTALGIDFSAALLKGRQNYLCHTRLRRAL 137 Query: 117 LAGGDLPVQ-ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPM 175 L Q +++ ++ W+ +T DG +S + S+ W +V S C C Sbjct: 138 AQMDSLFTQGEAAELKRIQDWALRTQDGTLSDM-AFRPSSKVWAMVCSEPHACSMRHC-- 194 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMV-VKESGFGELIPEADVMIFDEAHQLPDIA 234 C ARK+ ++A VVV+NH LF M ++S + D +I DEAH + +IA Sbjct: 195 GPSCPYQAARKRVLEAKVVVLNHTLFFGLMAQAEDSEEAGFVFPGDFVILDEAHMIENIA 254 Query: 235 SQYFGQSLSSRQLL-DLAK----DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEP 289 ++ G LS L +L + L + Q+ D + S F+ + Sbjct: 255 ARQLGVQLSEPHLNYELLRMYNPRTHKGLLKPLNNPSLFQRVQDVMDASGLFFQNARDDL 314 Query: 290 GYRGN------LRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYR 343 G+ G+ L+ + + + + L L+ + + + L R + Sbjct: 315 GFAGSGKIVRILQPEWSQDILSQPLMELIGELKTEREKQEENAAVKDELADMAARMEEAQ 374 Query: 344 TRLKRLKEINQPGYSYWYEC---TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLS 400 LK L ++ + G+ YW E R+ ++ P+ V D +E + S I TSATL Sbjct: 375 ASLKVLMDMTEEGHVYWAERSGPDGRNMSVCSAPVEVGDILRERLFSAGRSAILTSATLG 434 Query: 401 VND-DLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPI 459 D D+ +F R+G E+ L + SPF+Y Q L V R++P+ +QP A L ++ Sbjct: 435 TGDADMSYFAGRVGAERIRKLQIGSPFNYREQMRLIVARSMPEPDQPEYAEVLPEWIKRY 494 Query: 460 IEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQGET-SKGQLLQQFVSAGNALL 515 + + GR F+L TS+ +M AE+ R + +QG+ + +L+ F +++L Sbjct: 495 LAESRGRAFVLFTSYRLMVQAAEKVRPFCEEQGWTLYVQGQDMQRHAMLEAFRKDVDSVL 554 Query: 516 VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVI 575 T SFW GVDV G++LS VI+ +LPF PD PL+++R E R RGG+PF E +P A++ Sbjct: 555 FGTDSFWTGVDVPGESLSNVIVTRLPFEVPDHPLVESRFESIRERGGNPFYEYSVPVAIL 614 Query: 576 TLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP 618 L+QGVGRLIR D G++VI D R+ + YG FL SLP A Sbjct: 615 KLRQGVGRLIRTRSDSGMVVILDPRVATKRYGMRFLKSLPEAR 657 >UniRef50_B1I276 DNA polymerase III, epsilon subunit n=3 Tax=Bacteria RepID=B1I276_DESAP Length = 921 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 212/665 (31%), Positives = 310/665 (46%), Gaps = 52/665 (7%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + P G L + F+ R PQ Q+A+AV +A+E+ L VEAGTGTGK++AYL PA Sbjct: 236 VEAFLGPGGVLTRHFADFEYRRPQMQVALAVGRALEEQTVLTVEAGTGTGKSFAYLVPAA 295 Query: 61 RA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 ++V++ST + LQDQL +DLP + +AL LLKGR +YLCL R Sbjct: 296 LWALDGGRRVVVSTHTVNLQDQLMEKDLPLLGRALDAPLKTVLLKGRGHYLCLRRWGAAV 355 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 LP + + W +T GD + E+ W V + + C + C Sbjct: 356 NEQSFLPDEGFLY-ARIAVWLARTKTGDRAELSLRPEEKGFWDGVAAGDWGCAHAYCRFN 414 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 CF+ +AR+ A A +V+ NH L L+D+ ++ L+P D ++ DEAH L +A++ Sbjct: 415 SVCFLQRARRAAEQAHLVITNHSLLLSDLKMENR----LLPAYDALVLDEAHHLEGVATE 470 Query: 237 YFGQSLSSRQLLDLA----KDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYR 292 G ++S L + + + + + L + + F LG R Sbjct: 471 QLGTTVSRGALERWVEGLNRLTGRIGEFYPDNRDEFLRDGEALLAAVRRFFALLGARLRR 530 Query: 293 GNLRE-----------------------LLANPQIQRAFLLLDDTLELCYD--VAKLSLG 327 L E L ++ L +E D V + Sbjct: 531 RELPEEDFAAERLGPRALDACPETAGSYLELAGSLKAYVQRLSRAVERLTDSTVPAVQEE 590 Query: 328 RSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF---TLALTPLSVADKFKEL 384 L+ + L+ + E PGY +W E R L P+ V + + Sbjct: 591 LRVGLEQELAVGKRLASDLEFVYEAADPGYVFWLEGGGRQTAEGVLRAAPVHVGELLHDG 650 Query: 385 MAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE-----SLLLPSPFDYSRQALLCVLRN 439 + I TSATL+V F R+G+E SL++ SPF Y+ QALL V+ + Sbjct: 651 FFRSGKPVILTSATLTVQSSFSFFDERVGLEHLPRDLRGSLIVGSPFAYAEQALLYVVTD 710 Query: 440 LPQTNQPG--SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLL 494 LP ++ L I+ GR L T+H +R + + L +L Sbjct: 711 LPDPGDGDGAYLDAVSDALGRIVGVTRGRTLALFTAHKALRTAYRRLKPVLEKQGLELLG 770 Query: 495 QG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKAR 553 G + + +LLQ F + A+L SSFWEGVDV GD LS ++I KLPF P+ P+L+AR Sbjct: 771 HGLDGGRARLLQYFRNTPQAVLFGASSFWEGVDVPGDALSCLVIVKLPFEPPNRPVLQAR 830 Query: 554 MEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLAS 613 E+ R RG F+++ LP AV+ LKQG GRLIR DRGV++I DNRLV + YGA FL S Sbjct: 831 REEVRRRGRSDFNDLCLPQAVLRLKQGFGRLIRTTADRGVVIILDNRLVRKRYGALFLES 890 Query: 614 LPPAP 618 LP AP Sbjct: 891 LPAAP 895 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 207/677 (30%), Positives = 319/677 (47%), Gaps = 67/677 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + G LA+ IPG++ R Q +M AV A+ L VEAGTGTGK+ AYL PA+ Sbjct: 230 LVAMLDHRGLLAEQIPGYEYRPQQVEMLRAVASALAGNHYLTVEAGTGTGKSLAYLLPAI 289 Query: 61 RAKKKV----IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 I+T + +LQ+QL+ +DLP + + L ++ AL+KGRSNY+C +L Sbjct: 290 YWACSQRKRVAIATHTISLQEQLWQKDLPQLRELLPFSFKAALVKGRSNYICRRKLRDYL 349 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 + L + + W T GD S E+ + + + C GS CP Sbjct: 350 ANPPAGEAERLFA-MRVLRWLEVTTSGDWSEMKLTPEEEGFKFALAADTETCTGSACPFN 408 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 +CFV AR++A A+++++NH L L+D+ +++P+ +I DEAH L + A++ Sbjct: 409 DECFVNAARREAEAANILILNHSLLLSDI----RLNNQVLPDYPYLIIDEAHHLEEAATE 464 Query: 237 YFGQSLSSR-----------------------------------QLLDLAKDITIAYRTE 261 + G S+S +L D +D+ + Sbjct: 465 HLGSSVSQASCELFFRRLGRGEQAYSFLGRVRNLARRLPPEGNLELADFLEDMELTVTAT 524 Query: 262 LKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDV 321 L Q+ + RL+ +A+ + L+E A + F L++ L Sbjct: 525 LAGWQEFWESLGRLSDAARW-EEAGYTLRFTSRLKETPAWDNLLSVFGSLEENLSGLASR 583 Query: 322 AKLSLGR---------SALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH-FTLA 371 + +A Y L ++ + + W E + + L Sbjct: 584 LERLSELLSAAGAGEFAADAGNFAAVVAQYSYDLGQILDADPATSVSWLEKNNHGQYILR 643 Query: 372 LTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-----EQAESLLLPSPF 426 PL + EL+ + + I TSATL+VN+ ++ + G+ ++ S + SPF Sbjct: 644 SAPLDIGPLLAELLFSRKQAVILTSATLTVNNSFDYYHQQTGLQELPADRVVSCQVSSPF 703 Query: 427 DYSRQALLCVLRNLPQTN---QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQ 483 DY QAL+C +R LP AR + +L I A GR +LCTSH +R++ E Sbjct: 704 DYRSQALVCSIRGLPNPGQLKDADYARAITPVLTAICPAVGGRSLVLCTSHRFLREVYEL 763 Query: 484 FRATM---TLPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDK 539 A + VL QG + S+ +LL++F+ A+L+ +S+WEG+D+ GD L VII + Sbjct: 764 LSADLNGSGYRVLAQGIDGSRSRLLEEFIQTPRAVLLGANSYWEGIDLPGDLLRCVIIPR 823 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LPF SP P L ARME RG + F + LP A+I +QG GRLIR A DRGVLVI D Sbjct: 824 LPFPSPGIPTLAARMEHLAARGQNAFATLSLPQAIIRFRQGFGRLIRRASDRGVLVILDQ 883 Query: 600 RLVMRPYGATFLASLPP 616 RL+ + YG F+ SLPP Sbjct: 884 RLLSQRYGRLFIQSLPP 900 >UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-related DNA helicase n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GHT3_ANOFW Length = 880 Score = 489 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 178/627 (28%), Positives = 298/627 (47%), Gaps = 38/627 (6%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKKKVIISTGSK 73 F+ RE Q+QM V A++ Q ++EAGTG GKT AYL P A++ ++ +++ST + Sbjct: 251 FEYREGQKQMMDDVNYALQTCQHALIEAGTGVGKTMAYLLPTVFYAVKQQQPIVVSTYTL 310 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 LQ Q+ ++LP V++ + + A+LKG+ NY+ + + + D I L Sbjct: 311 QLQKQMIEKELPRVAQLVPFPFTTAVLKGKRNYMSVRKFARTLKHI-DTNYDIALTKCQL 369 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADV 193 W +T GD+ A + W V S + N + F V+A++KA A V Sbjct: 370 LVWLTETETGDVDELNLTAGGALFWEDVHSDDTNE--------EYDFFVRAKEKAKHAHV 421 Query: 194 VVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKD 253 ++ NH + D+ E +P + +I DEAH L D+A+ +FG+ +S + L Sbjct: 422 IITNHSFVMHDLTADEKW----LPPYEQLIIDEAHHLEDVAAHFFGRHVSYEYIRLLWTR 477 Query: 254 ITIAYRTELKD-----TQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF 308 + L+ ++L QS + + L+ + R R + + Sbjct: 478 MNDIAMIHKMGALRSLLGDLEYELNQLFQSLRHYVLRRQKGDGRIRYRFVPWKEYGKEWS 537 Query: 309 LLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEI---NQPGYSYWYECTS 365 ++ + + DV +LS + + + T + L+ L+ + + W E + Sbjct: 538 GTIELLMRIMNDVQQLSQMINDIPKEDVKPFTTFIDTLRTLQHLLTSDDDDIVRWLEVDA 597 Query: 366 ----RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE--S 419 T+ PL +A F + + + S I TSATL+ N +RLG++ + Sbjct: 598 KAAVNAVTVISQPLDLAHFFADQLFSRKRSVILTSATLTTNGRFSFIIARLGLDDFYPFT 657 Query: 420 LLLPSPFDYSRQALLCVLRNLPQ---TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 ++PSPF Y +QA L V +LP A A + I GR +L TS+ + Sbjct: 658 RIIPSPFSYEKQAALMVPTDLPTFPSVTVEQYAEHAAQQVIRIARHTKGRMLVLFTSYEL 717 Query: 477 MRDLAEQFRA--TMTLPVLLQGE--TSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTL 532 ++ + +L QG + +L + F A+L TSSFWEG+D+ G + Sbjct: 718 LKQTYAYAKQFNDDQFVLLAQGVSGGNAAKLTRHFQQFEQAILFGTSSFWEGIDLPGSEV 777 Query: 533 SLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRG 592 + V+I +LPF PDDP+++A+ + R +GG+PF ++ LP A++ KQG GRLIR +DRG Sbjct: 778 TCVVIVRLPFAPPDDPVMEAKSDYIRAKGGNPFYDLSLPQAILRFKQGFGRLIRTKEDRG 837 Query: 593 VLVICDNRLVMRPYGATFLASLPPAPR 619 ++ + D RL+ Y FL SLPP Sbjct: 838 IIFVFDQRLLTASYSKYFLQSLPPIRV 864 >UniRef50_A8VXY5 3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Bacillales RepID=A8VXY5_9BACI Length = 935 Score = 489 bits (1259), Expect = e-136, Method: Composition-based stats. Identities = 185/701 (26%), Positives = 305/701 (43%), Gaps = 70/701 (9%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL- 60 TD + + ++IPGF+ R Q M V + Q +VEAGTGTGKT AYL PA+ Sbjct: 237 TDIIENEELMKQSIPGFELRSTQMDMMKFVEDVFKHDQIGLVEAGTGTGKTLAYLIPAVI 296 Query: 61 ---RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL 117 + + V+IST + LQ Q+ +++ + + + +LLKGR +YLCL++LE Sbjct: 297 HAVKHDQPVVISTETIQLQSQMLNKEWAVIKDIFPFPVHASLLKGRGHYLCLQKLENLLA 356 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 + L W +T GD+ + + + W V+S +C CP + Sbjct: 357 EDTNDHYDRAVAKAQLLIWILETDTGDVEEVNLASTNYRFWMDVSSDGISCTTPKCPWFT 416 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 + +A+++A DAD++V NH L L D+ + ++IP D +I DEAH L D A++ Sbjct: 417 RDYYQRAKQQARDADIIVTNHSLLLTDIRLSH----QIIPSYDSLILDEAHHLEDTATRQ 472 Query: 238 FGQSLSSRQLLDLAK--------------DITIAYRTELKDTQQLQKCADRLAQSAQDFR 283 FG ++ L + + Q+LQ+ ++ L + Sbjct: 473 FGHQQDYISVIQLVNALANDEQQSFLSGALYKKLSSSLREKYQELQRISESLHERWNQLF 532 Query: 284 LQLGEPGYRGNLREL----------LANPQIQRAFLLLDD-----------TLELCYDVA 322 ++L E G G + + + + + + +L +++ Sbjct: 533 MELHEYGTVGKAEKADTSRRSKVIAMDDHTWKPVQEAIQETDGAFRHLITSFRKLLFEIE 592 Query: 323 KLSLGRS---------ALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH----FT 369 + + L A + L W E R T Sbjct: 593 NEADEKGYLNSLERDIENLSTASQAFEDEYETFYHLYHSQDEKQVIWMELEERGPRQSIT 652 Query: 370 LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE--SLLLPSPFD 427 + P+ V++ + + I TSAT++V + R G+ + LPSPF Sbjct: 653 IRSAPVDVSETLADQLFSSKKRVILTSATMTVKSSFDYVIERFGLTDFDLAVKQLPSPFQ 712 Query: 428 YSRQALLCVLRNLPQ---TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF 484 Y +Q L V ++P T+ A A + + A GR +L TS+ M+R Sbjct: 713 YEKQVGLFVPEDMPMIQGTSDRAYAEACAYHIFRLSGATEGRMLVLFTSYDMLRKTYYAV 772 Query: 485 RATMT--LPVLLQG--ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL 540 R + ++ QG S+ +L++ F ++L TSSFWEGVD+ GD LS +++ +L Sbjct: 773 RDMLDDTYMLIAQGVQTASRQKLIKHFQQFDRSILFGTSSFWEGVDIPGDNLSAIVMVRL 832 Query: 541 PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR 600 PF+ P+DP+ +AR E + +G + F + LP AV+ KQG GRLIR + DRG +++ D R Sbjct: 833 PFSPPNDPVFQARSEAVKEQGKNAFMHLALPQAVLRFKQGFGRLIRSSTDRGAVIVLDRR 892 Query: 601 LVMRPYGATFLASLPPAPRTRD-----IARAVRFLAIPSSR 636 +V YG F SL R I +L S+ Sbjct: 893 MVTTRYGHFFAKSLQDVAVNRMDMDEIIKELPSWLNPVSTE 933 >UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus RepID=C6CUG6_PAESJ Length = 953 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 194/704 (27%), Positives = 315/704 (44%), Gaps = 81/704 (11%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKV--- 66 + + P ++ RE Q M V ++ + L++EAGTGTGK+ YL PAL + Sbjct: 252 RFMEKYPNYEEREAQTTMFREVYDSLCSDRHLLIEAGTGTGKSLGYLIPALYYGIQQESK 311 Query: 67 -IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL-PV 124 ++ST + LQ+QL RD+P + + L + ++ KGR NYLCL + E + A + P+ Sbjct: 312 IVVSTHTINLQEQLRQRDVPLLREILPFDFRASIFKGRGNYLCLRKFESKINAKDLVAPI 371 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 + W ++T GD + S W V S D+CL CP +K C+ +A Sbjct: 372 DDAITASQMVVWLSETETGDQEELNFGNKGSDFWSTVASDADSCLNRQCPWFKRCYYHRA 431 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 + ++ ADV + NH + D+ L+P +I DEAH + ++A ++ G L+ Sbjct: 432 KHESNIADVCITNHSMLFTDVQADHR----LLPSYSHLIIDEAHHVEEVAGKHLGMQLNY 487 Query: 245 RQLL----DLAKDITIAYRTELKDT-----------------------QQLQKCADRLAQ 277 L L KD L+ Q +++ D+L + Sbjct: 488 FSLTHQTTRLFKDARSGLLPALRLRLQQEDDERVQAWTETIDTVIPVFQDVKEHWDKLFE 547 Query: 278 SAQDFRLQLGEPGY---------------RGNLRELLANPQIQRAFLLLDDTLELCYDVA 322 F + GE G +G L + + T++ Sbjct: 548 LLYAFVGESGEAGNDNGQAVCRLRSDTPPKGWDDVLTIENNVHTELSRVVKTVDKMATDI 607 Query: 323 KLSLGRSAL------LDAAFERATLYRTRLKRLKEINQPGYSYWYECTS----RHFTLAL 372 K L ++ L+ T + L+ ++ Q YW E ++ R L Sbjct: 608 KDRLDDQSIQGLITDLNGVVRDLTRVKDDLRTFLKMEQNSEVYWIEASTTYRYRSVHLYA 667 Query: 373 TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE------SLLLPSPF 426 P+ V+ + ++ S I TSATLSV+ + +LG+E E ++ LPSPF Sbjct: 668 VPVDVSKQLQQYFFDVKDSIILTSATLSVHKSFQYAEEQLGLEGFEENNRLKTVQLPSPF 727 Query: 427 DYSRQALLCVLRNLPQ----TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 +Y QAL+ + RN P P L + L GR +L TS+ M++ + E Sbjct: 728 NYREQALVIIPRNFPTLKGSAGDPQFISMLVSSLADSAVETKGRMLVLFTSYRMLKQVYE 787 Query: 483 QFRATM---TLPVLLQGETS--KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 + + + VL QG S + +L ++F +L+ TSSFWEGVD+ G+ L+ + I Sbjct: 788 PLKEALMGSGIQVLGQGIDSGNRTKLTRRFTQQPETVLLGTSSFWEGVDIPGEALTCLAI 847 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 +LPF P+ PL++A+ E + + +PF ++ +P AVI KQG GRL+R A D+G+++I Sbjct: 848 VRLPFQPPNHPLVEAKSELLQKQKQNPFMKLSIPQAVIRFKQGFGRLVRTAKDKGIVIIY 907 Query: 598 DNRLVMRPYGATFLASLP-PAPRTRDIAR----AVRFLAIPSSR 636 D R++ YG FL SLP P T I + +L Sbjct: 908 DTRVIDTYYGKHFLYSLPGPKIETMHIDQMVPRMREWLQTEEEE 951 >UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2 Tax=Desulfitobacterium hafniense RepID=B8FZZ1_DESHD Length = 929 Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats. Identities = 186/695 (26%), Positives = 331/695 (47%), Gaps = 64/695 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + F+ G L + ++ R Q QMA AV +++ +V+EAGTGTGK+YAYL P L Sbjct: 236 IESCFSSGGILENKLKSYESRLGQLQMAKAVGESLTGSTHIVIEAGTGTGKSYAYLIPGL 295 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 + KKV+++T + LQ+Q++ +DLP +++ L ++ ALLKG+SNY+CL+R Sbjct: 296 WWSKKTGKKVVVATHTIPLQEQIFKKDLPLLAQVLPFSFRGALLKGKSNYICLKRWSFTL 355 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 +L ++ + W +T GD + ++ W + ++C+ C Sbjct: 356 GVTAELAPGERLALLSVMVWLRETTTGDWQEVSQIPSLNKLWGSLNCEEESCIPGKCSHA 415 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 C+++++RK+A +AD+++VNH L +D+ ++ ++PE +I DEAH L A + Sbjct: 416 NRCYMLQSRKRAEEADLIIVNHSLLFSDIKTEK----NILPEYHELIIDEAHHLHQAALE 471 Query: 237 YFGQSLSSRQLLDLAKDITIAY------------------------RTELKDTQQLQKCA 272 G +S Q+ + ++ + ++L + Sbjct: 472 QLGNEISLEQISRVLNLLSRSMAGSFYGNVKARAQVWERLLSVALWERFRGYLEKLPEAC 531 Query: 273 DRLAQSAQDFRLQLGEPGYRGNLREL--------------LANPQIQRAFLLLDDTLELC 318 D L Q A++ + L + + ++ D L+ Sbjct: 532 DELYQQAEELFATFAQIVGNELSYRLTVHCHQESWWPTVAVQIENLLGRLKIITDLLKAM 591 Query: 319 YDVAKLSLGRSA-----LLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALT 373 ++ + + R ++++QP W E ++R L + Sbjct: 592 LNLLDAQDDEDSAALAHEISGRIRNLEEMRECFVLAQQVDQPTRVSWLEQSNR-ILLKTS 650 Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE-SLLLPSPFDYSRQA 432 P+ V++ KE + + TSAT+S+ + HF +G++++ SLL+ SPFDY RQ Sbjct: 651 PVDVSNLLKEKLFAPLDCAVLTSATISIANSFQHFLREIGLDESTPSLLVDSPFDYERQM 710 Query: 433 LLCVLRNLPQTNQPG--SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT- 489 L V+++L + ++A + + E GR +L TSH +R++ + Sbjct: 711 QLLVVKDLVDVKHCDLFNTEEVALFISEVTERMQGRTLVLFTSHRFLREIHLPLSRYLGG 770 Query: 490 --LPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPD 546 + +L QG + + +L+ F++ ++L+ SSFWEG+D+ GD LS VI+ KLPF P+ Sbjct: 771 SGIELLAQGIDGGRQAILEAFLNNSRSVLLGASSFWEGIDIPGDALSCVILVKLPFGPPN 830 Query: 547 DPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPY 606 PL+ AR E +G +PF E LP+AV+ KQG GRLIR DRG++++CD R++ + Y Sbjct: 831 RPLIAARSEYLEAQGRNPFYEFLLPEAVLRFKQGFGRLIRSKSDRGLVILCDGRVIHKRY 890 Query: 607 GATFLASLPPAPRTRD-----IARAVRFLAIPSSR 636 G FL+SLP R + + + + Sbjct: 891 GRHFLSSLPVKTHIRTSRSQILDKIDLWFDEEYQK 925 >UniRef50_Q7NN01 Gll0614 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NN01_GLOVI Length = 719 Score = 487 bits (1253), Expect = e-136, Method: Composition-based stats. Identities = 204/650 (31%), Positives = 309/650 (47%), Gaps = 38/650 (5%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 ++D F +A+ +PG++ R+PQ MA AV + + +V EAGTGTGK+++ L PA+ Sbjct: 72 LSDAFE---DVARVLPGYEVRQPQLDMARAVERGFAERIAVVAEAGTGTGKSFSALVPAI 128 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + K+V+IST + ALQ+Q +D+P + KAL L+KGRS+Y+ R + LA G Sbjct: 129 LSGKRVVISTATIALQEQYLYKDIPLLQKALPVRFEARLVKGRSHYVSKRRWSESLLAPG 188 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + LR W QT GD++ + S+ W + S D+CL CP + CF Sbjct: 189 ---------ITWLREWYEQTESGDLADLPTSPP-SEIWDDIRSDKDDCLREKCPHFDSCF 238 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 ++R+ A +++ NH L L D G+++P+ D+++ DEAHQ + A++ Sbjct: 239 YFESRRSLGQAQILITNHALLLIDRASH----GQILPDFDLLVIDEAHQFAEYATRALTL 294 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 +LS+ + I + + + A+ + Q R NL +A Sbjct: 295 TLSNFGMGRTLSRIKKQFPNLGIALARAEAEANAFFEVLLTEAHQ----TRRYNLDPAMA 350 Query: 301 NPQIQRAFLLLDDTLELCYDVAKLSLGRSALL--DAAFERATLYRTRLKRLKEINQPGYS 358 + LL EL A + D E T Y L+ L E + Sbjct: 351 DDLSAAVVRLLQSLKELNLGSEDNLETNVARMRRDRLVETLTGYEGNLRVLAEPG-ENWV 409 Query: 359 YWYEC-----TSRHFTLALTPLSVADKFKELM-AQKPGSWIFTSATLSVND--DLHHFTS 410 W E + L TPL VA + + ++ SATLS F Sbjct: 410 NWVEYQTTRGGGTNVALNCTPLDVAPPLGQWFSHPDGPTAVWMSATLSTAGADPFDFFRR 469 Query: 411 RLGIEQ--AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCF 468 ++G+ AE + SPFDY Q LL + +LP N A +AA + ++ + GR F Sbjct: 470 QVGLPAGTAEERIFASPFDYPSQGLLYLPTHLPDPNDASYANAIAAEIEKLVNFSEGRAF 529 Query: 469 MLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 +L TS M+ + A + P Q + K +L++ F + N +L AT+SFWEGV V Sbjct: 530 VLFTSLQQMKQVYALLEAKLLWPAQHQEQMPKRRLVEWFRTVKNPVLFATASFWEGVSVE 589 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGD---PFDEVQLPDAVITLKQGVGRLI 585 G LSLV+ID++PF SP D + AR E GD FD + LP A + LKQG GRL+ Sbjct: 590 GPQLSLVVIDRIPFQSPGDIVYDARCELLSRTSGDRWAWFDRLALPYAQLRLKQGAGRLV 649 Query: 586 RDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA-RAVRFLAIPS 634 R D+G++ I D R+ + YG T L SLPP +R R R P+ Sbjct: 650 RTRTDKGIVAILDPRMHRKAYGKTILKSLPPMQVSRRFDPRLFRAFIDPA 699 >UniRef50_C1A7T8 Putative ATP-dependent DNA helicase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7T8_GEMAT Length = 713 Score = 485 bits (1248), Expect = e-135, Method: Composition-based stats. Identities = 220/712 (30%), Positives = 323/712 (45%), Gaps = 83/712 (11%) Query: 5 FAPDGQLAKAIPG------FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP 58 P G +A+A+ G ++ R QR MA AVT +G ++EAGTG GK+ YL P Sbjct: 3 LGPYGLVAQAMRGMYGIRDYEDRPSQRAMATAVTTTFNEGGVALLEAGTGVGKSLGYLVP 62 Query: 59 ALRA----KKKVIISTGSKALQDQLYSRDLPTVSKAL-KYTGNVALLKGRSNYLCLERLE 113 ALR ++ ++ST + LQ+QL ++DLP + +AL ALLKG NYLCL RL Sbjct: 63 ALRWAAANGERTVVSTATITLQEQLVAKDLPFLQRALSDQPVRFALLKGWRNYLCLNRLA 122 Query: 114 QQALAGGDL-PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD 172 AG L + DV ++ W+++T DG ++ A + W V++ D C Sbjct: 123 AAQGAGAALFDDNVSDDVAMIAEWASRTKDGSLADLP-TAPRGEVWDEVSAEPDLCGRMK 181 Query: 173 CPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKE----SGFGELIPEADVMIFDEAH 228 C Y DCF+ KARK+A ADVVVVNHHL L+D+ V+ ++P ++ DE H Sbjct: 182 CEHYNDCFLFKARKEAAAADVVVVNHHLLLSDVAVRRQVQNWEDSAVLPAYKRLVIDEGH 241 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTEL-------------------------- 262 L + A + G S++ R L L + + L Sbjct: 242 HLEEAAGSHLGSSITRRALSRLFNRLERRGKGLLPTLAAKLSGKNDLLSVASMDLLREGL 301 Query: 263 --------KDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDT 314 TQ L + + + L+L E +L ++ +D Sbjct: 302 FSSVLTARDRTQLLFELLAAVLEQQGGGVLRLTESFQEHDLWRNGIGDTLKELLNEIDAI 361 Query: 315 LELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ------------PGYSYWYE 362 + V + L+ R +RL+ P W E Sbjct: 362 AKGLAMVQTRLESDQSRLEELSSTVNEIRGVTRRLQNAGDALMKGLMPPADGPAVVRWME 421 Query: 363 CTS------RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-- 414 R+ + PL +A ++ + + + + TSATLS + RLG+ Sbjct: 422 FQGKPTPHERNLAVHCVPLDLAPVLRDDLFGRVETAVVTSATLSTDGGFQFLERRLGLAG 481 Query: 415 --EQAESLLLPSPFDYSRQALLCVLRNLPQTNQ--PGSARQLAAMLRPIIEANNGRCFML 470 + + PSPFDY RQALL V +LP N+ + L + A++G F L Sbjct: 482 STSPVRAAIFPSPFDYPRQALLVVPTDLPAPNEQAREHFAGVTRHLHDLAHASDGGLFGL 541 Query: 471 CTSHAMMRDLAEQFRAT---MTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDV 527 TSH +R++AE R P+L+ GE + QLLQ+F +G A+L+ T++FWEG+DV Sbjct: 542 FTSHRDVREMAEWMRGQGLSGRWPLLVHGEEPRDQLLQRFRESGRAILLGTATFWEGIDV 601 Query: 528 RGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRD 587 GD L ++I KLPF P +P++ A+ E RGG+ F E LP A + LKQG GRLIR Sbjct: 602 PGDALRGLLIAKLPFRVPTEPIVAAQCEAIDARGGNAFVEYMLPHASLRLKQGFGRLIRT 661 Query: 588 ADDRGVLVICDNRLVMRPYGATFLASLPPAPRT-----RDIARAVRFLAIPS 634 A D GV+V+ D R+V + YG L LPPA R + F Sbjct: 662 ATDAGVVVLSDPRVVTKRYGRALLNGLPPAQRVIGAWGDVRGQVSAFYRSAR 713 >UniRef50_A9BWB5 Helicase c2 n=2 Tax=Comamonadaceae RepID=A9BWB5_DELAS Length = 724 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 261/698 (37%), Positives = 366/698 (52%), Gaps = 66/698 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + FAP G L++A F PRE Q +MA+AV QAIE+ Q LVVEAGTG GKTYAYL PAL Sbjct: 8 VQAAFAPQGLLSRAEALFLPREGQTRMALAVAQAIEQRQTLVVEAGTGVGKTYAYLVPAL 67 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 + ++V++ST ++ALQDQLY+RDLP + AL +A LKGRS YLC+ERLE+ Sbjct: 68 LSGQRVLVSTATRALQDQLYARDLPRLVAALGMPLRMARLKGRSAYLCMERLERVRQGRT 127 Query: 121 D-LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 Q+L V L+ W+ T GD+ ++ E S A PLVTST DNCLGSDCP ++DC Sbjct: 128 APQDPQVLRSVALVERWARTTRTGDLGELPALDERSPALPLVTSTRDNCLGSDCPHWQDC 187 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 V AR+ A++ADVVV+NHHL AD+ V+ESG +L+P V++ DEAHQL D Q+ G Sbjct: 188 HVNVARRAALEADVVVINHHLMFADLDVRESGVAQLLPSVGVVVVDEAHQLNDTGVQFAG 247 Query: 240 QSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNL---- 295 QSLS +QL A+D+ A + + + + R+ Q+ ++ RL G+P G L Sbjct: 248 QSLSGQQLTGYARDVLRAGQELARGMADWMQLSARVEQALRELRLAAGKPPAGGRLPWQG 307 Query: 296 --RELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEIN 353 + L + + A + L +L + L FER RL Sbjct: 308 VTPQGLDAQRWRTALVTLGRSLRALLEPLVQLQVSDPELRRLFERGNELLRRLATFAAAA 367 Query: 354 QPGYSYWYECTSRHFTLALTPLSVADKFKELMA--------------------------- 386 W E S+ + +PL++A + + Sbjct: 368 VQDTVRWLELGSQQMRMLESPLTIAHIMRTRLLGLTQEQEGSEDQEREDAQPEPEPQEQE 427 Query: 387 ----------------QKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSR 430 +WIFTSATL ++ L FT G+ +A+ L + SPFDY+R Sbjct: 428 EGAPAPVHEAAGLPRQPSGTAWIFTSATLGDDERLSWFTEPCGLREAQVLRVDSPFDYAR 487 Query: 431 QALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT- 489 QA L V R Q + ++A + + GR +L T+ + + + + ++ Sbjct: 488 QAALYVPRPFAQAGSATHSTEVARLALDAAQRLGGRTLVLTTTLRALHAIGDALQQSLGL 547 Query: 490 ---LPVLLQGETSKGQLLQQFVSAGNA------------LLVATSSFWEGVDVRGDTLSL 534 L VL+QG+ K L+++F++AG +LVA+++FWEGVD+ GD L L Sbjct: 548 FGELDVLVQGQAPKLALIERFIAAGEGREGTGASPGRGCILVASATFWEGVDLPGDALQL 607 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 V+IDKLPF PDDPL++AR G F + LP+A + LKQG GRLIR DRGVL Sbjct: 608 VVIDKLPFPPPDDPLVEARSRSLESVGRQAFADYMLPEAAMALKQGAGRLIRRETDRGVL 667 Query: 595 VICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAI 632 V+CD+RL YG A+LPP D A V+ L Sbjct: 668 VVCDSRLATMGYGRRLRAALPPMRTLVDEAAFVQALQA 705 >UniRef50_Q73L75 ATP-dependent helicase, DinG family n=3 Tax=Treponema RepID=Q73L75_TREDE Length = 709 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 181/667 (27%), Positives = 306/667 (45%), Gaps = 54/667 (8%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 ++ DG LA ++ REPQ + ++ + + V EAGTG GK+ AYL PA+ Sbjct: 22 VSSLLEEDGPLASFFERYEAREPQLALTKSICRCFNEEAIGVFEAGTGVGKSLAYLLPAM 81 Query: 61 RAKKK----VIISTGSKALQDQLYSRDLPTVSKALKYTG---NVALLKGRSNYLCLERLE 113 K+ V+ISTG+ LQ QL +D+ T K L L+KGR N+LCL R+ Sbjct: 82 MWAKQNKKRVVISTGTINLQQQLIEKDVLTAKKILGKGFQDMKACLVKGRHNFLCLRRMT 141 Query: 114 QQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDC 173 Q D + ++ ++ W+ +T DG S + W V S DNC + C Sbjct: 142 QALRE-NDFFTEGQEELDKIKEWATETKDGSRSDL-DFMPTEKVWSTVCSEPDNCPMNKC 199 Query: 174 PMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG----ELIPEADVMIFDEAHQ 229 P + CFV+K +++A ++ ++V NHH+ AD+ V+ GFG ++P D +I DEAH Sbjct: 200 PYFSGCFVMKLKREAENSSILVANHHILFADLSVRAEGFGYQGTAVLPSYDNIIIDEAHG 259 Query: 230 LPDIASQYFGQSLSSRQLLDLAKDITIAYRTE-----------------LKDTQQLQKCA 272 + D A +F +S L + R + + L + A Sbjct: 260 IEDAAQSFFSSDISRFALHKQINLLYRFRRGKQAGILSGIVSISKKAELFTEIINLLEVA 319 Query: 273 DRLAQSAQDFRLQLGEPGYRGNLRELLANP---------QIQRAFLLLDDTLELCYDVAK 323 ++ LQ+ + +L + ++ + L+ LE + A Sbjct: 320 AASFNILEEQALQVLQTYQSKSLAQTSSDEKEKLLSCVDNFFKNINNLNIKLENLINAAD 379 Query: 324 LSLGRSALLDA---AFERATLYRTRLKRLKEINQ-PGYSYWYEC----TSRHFTLALTPL 375 + R + ++ ++ P +W+E TPL Sbjct: 380 GEEDEEGYIREGLVVLRRLKKMASVMENFLNSSEFPNDVFWFEKIKTSQGEAVRFIQTPL 439 Query: 376 SVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL-----LPSPFDYSR 430 ++A + + + I SATL + DD + + +R G+ PSPF Y + Sbjct: 440 NLAPIMRRSVFMPMATVICVSATLKIGDDFNFWLNRNGLYNFTEKKIIKDFFPSPFPYEK 499 Query: 431 QALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT- 489 + + ++P ++ + + ++E G+ +L TS+ ++ E R + Sbjct: 500 NVVFNIPTDMPMPDENNFQDAVNETVLALLEITQGKTLILFTSYDSLQKTCEYVREHIDE 559 Query: 490 -LPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDP 548 + +L QGE + QLL +F + L ATSSFW GVDV G++LS VI+ KLPF P +P Sbjct: 560 KIKILKQGEADRMQLLYEFKDDVTSCLFATSSFWAGVDVPGESLSHVILVKLPFAVPTEP 619 Query: 549 LLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGA 608 + KAR + GG+ F ++ +P+AV+ +QG GRL+R DRG++ + D R++++ YG+ Sbjct: 620 IFKARADLIEKSGGNSFMQLSVPEAVVQFRQGFGRLMRSNTDRGIVTVLDKRILVKRYGS 679 Query: 609 TFLASLP 615 F+ S+P Sbjct: 680 IFIQSIP 686 >UniRef50_C8WX41 Exonuclease RNase T and DNA polymerase III n=3 Tax=Bacteria RepID=C8WX41_ALIAD Length = 952 Score = 478 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 191/699 (27%), Positives = 327/699 (46%), Gaps = 71/699 (10%) Query: 3 DDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA--- 59 D P G LA ++ GF+ R Q M AV QA+ +G+ +VEAGTGTGK+ AYL PA Sbjct: 247 DMLMPGGPLAASLRGFEARPGQLAMVEAVAQALAEGKHAMVEAGTGTGKSLAYLVPAALI 306 Query: 60 -LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE-QQAL 117 + + V++ST + +LQDQ+ RD P + + + + KGR+NY+CL ++ + L Sbjct: 307 AMATGEPVVVSTHTLSLQDQIAERDFPLLRRIFGDELRLVVQKGRNNYVCLRKVRSEARL 366 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 + PV+ + ++ L W +T DG T + W V S +++C+ CP ++ Sbjct: 367 STMATPVEDIQGIMALLVWLTETPDGTRETLSKSSVGPGLWARVQSESESCINRRCPFFQ 426 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 C+ + ++ A A ++V NH L ++D+ ++P+ + ++ DEAH L + A+ + Sbjct: 427 PCYYFRTKQAAQAAHLIVTNHSLVMSDLASDHR----VLPKYEHLVVDEAHHLEEQATNH 482 Query: 238 FGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRL------AQSAQDFRLQLGEPGY 291 G + S + LA + R ++ + + L +S ++ + +G G Sbjct: 483 LGFEVQSGVMAALAHRLVRD-RGRAGVLAEVVRMLEELDIRGTTLESLEEGKEWVGTLGA 541 Query: 292 R----------------------GNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRS 329 G R+ + + A ++ D+ + Sbjct: 542 EVDAAFQAIAAYVPAGQSEARLDGAWRQTESFHAYREALDRTQAGVKRLQDLRARLVDLV 601 Query: 330 ALLDA---------AFERATLYRTRLKRLKEINQ--PGYSYWYECTSRH----FTLALTP 374 L + A + + R++E+ P W E + ++ P Sbjct: 602 KSLPSDDHVGRVVDAAGFLGSWLDGIARMQEVLDEHPDDVTWAEVQTGGSRVRVSVHRAP 661 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI------EQAESLLLPSPFDY 428 + VA K+ + S + TSATL+VN + +LG+ ++ + +PSPF Sbjct: 662 VDVARVLKQHLFDPLRSVVLTSATLAVNGEFGFAIRKLGLEEHAREDRVIARTVPSPFAM 721 Query: 429 SRQALLCVLRNLPQ---TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR 485 +QA L V ++P +A L A + + EA+ GR +L TSHA++R+ A R Sbjct: 722 DKQARLFVPSDVPDIAAAPPEEAATWLTASITDLAEASRGRMLVLFTSHALLRETARLAR 781 Query: 486 A---TMTLPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLP 541 A L +L Q + S+ LL+ F + +++ +FWEG+D+ GD L+ ++I +LP Sbjct: 782 APLAERGLSLLAQDLDGSRAALLEAFRAHPESVMFGAQTFWEGIDLPGDQLTSLVIVRLP 841 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 F P P+ AR+E G + F + LP+AV+ +QGVGRLIR DRGV+V+ D R+ Sbjct: 842 FAPPTHPVTAARLERLEASGQNAFRALSLPEAVVRFRQGVGRLIRTQQDRGVIVVFDKRI 901 Query: 602 VMRPYGATFLASLP---PAPRTRD--IARAVRFLAIPSS 635 V + YG+ F S+P P +A +FL S Sbjct: 902 VTQRYGSMFWKSIPGLRPRVVPERDLVAEVRKFLRDTPS 940 >UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI Length = 934 Score = 478 bits (1229), Expect = e-133, Method: Composition-based stats. Identities = 205/694 (29%), Positives = 315/694 (45%), Gaps = 72/694 (10%) Query: 6 APDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----R 61 + L A P ++ R Q M AV Q+ + +VEAGTGTGKT YL PA+ + Sbjct: 245 EKEDMLKNAFPDYELRPGQLAMMDAVYQSFLNNEHTLVEAGTGTGKTLGYLLPAIIFARQ 304 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 +V+IST + LQ+QL S+DLP + K L + N LLKGR +YL L R EQ D Sbjct: 305 EGARVLISTYTVQLQEQLLSKDLPLLEKLLGFPANAVLLKGRKHYLSLARFEQSLNEADD 364 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 L+ + + W +T GD+ + + W + + D+ S+ F Sbjct: 365 NYDTTLTKMQ-ILVWLTETATGDVDELNLSSGGAVFWNKIQN-GDSKFISESGWKSRDFY 422 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS 241 +ARK A +AD+++ NH + L + SG ++ P D + DE HQ A ++FG S Sbjct: 423 NRARKSAENADLIITNHAMLLNSL----SGENQIFPSYDYAVIDEGHQFSKAAGKHFGFS 478 Query: 242 LSSRQLLDLAKDITIAYRTEL-----------------KDTQQLQKCADRLAQSAQDFRL 284 + L L I + + +L +L + L +F Sbjct: 479 IDYLSLRLLLGKIGLYDQKQLLYKLERLLEGRAAMDGAAHPFELNRLVADLQYEMDEFFK 538 Query: 285 QLGEPGYRGNLRELLANPQI--------------------------QRAFLLLDDTLELC 318 +G G R A+ +I L+D L+L Sbjct: 539 LVGIYGKRKLKARKYASSKISFRLTDITPRDFKAVEASAERFSFLVLDLISALEDRLQLL 598 Query: 319 YDVA-KLSLGRSALLD---AAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF----TL 370 + +L+ G ALL+ A R +++ Q + W E R T+ Sbjct: 599 VPLTGELAPGDQALLEEISACIGELRDVRESIRKTIFAGQTACAVWVELDGRAMQNATTV 658 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL--LPSPFDY 428 P++VA ++ + S + TSATLSV + LG+++ + SPFDY Sbjct: 659 YSQPITVAGNLRDGFFNQKKSAVITSATLSVGQSFDYIMDELGLDRFSCQTELIESPFDY 718 Query: 429 SRQALLCVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR 485 + Q L V +LP+ N + + + EA NGR +L TSH M+R E + Sbjct: 719 ASQVRLAVPSDLPEINSVPLEEYVSAITEHIISLAEAANGRMLILFTSHDMLRRTYELVK 778 Query: 486 ATM---TLPVLLQG--ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKL 540 + ++ QG S+ +L + F ++L TSSFWEGVD+ G+ LS +++ +L Sbjct: 779 ESGFLEEYVLIAQGITSGSRTRLTRNFQRFDKSILFGTSSFWEGVDIPGEDLSCLVMVRL 838 Query: 541 PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR 600 PF+ PD+PL +AR E + RGG PF E LP+AV+ KQGVGRLIR +DRG++++ D R Sbjct: 839 PFSPPDEPLGEARKEAIQSRGGRPFSEHALPEAVLRFKQGVGRLIRTKNDRGIIIVFDRR 898 Query: 601 LVMRPYGATFLASLPPAP-RTRDIARAVRFLAIP 633 +V YG FL S+P P + + V + Sbjct: 899 IVTASYGRAFLDSIPSIPVKVSPLDAIVDLVEDW 932 >UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (DnaQ-like) (DinG-like helicase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES4_9BACT Length = 960 Score = 474 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 200/705 (28%), Positives = 302/705 (42%), Gaps = 77/705 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + FA DG A P F+ R Q MA V A K LVVEAGTG GK++AYL PA+ Sbjct: 255 IPEVFAEDGIFASKFPNFEFRSGQMTMAEEVADAFSKQDFLVVEAGTGVGKSFAYLVPAI 314 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 R K KVI+ST +K LQ+QL+ +DLP + K L L+KGR NY+C R ++ Sbjct: 315 DFSNRNKSKVIVSTNTKNLQEQLFFKDLPQLKKILPLPFQAVLVKGRENYICERRWQELL 374 Query: 117 LAGGD-LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDS--QAWPLVTSTNDNCLGSDC 173 + ++ L W T GD+S S ++ W + S C G C Sbjct: 375 QEQTRGITSYDAYGLLNLLVWKEHTNTGDVSENSSFDKNRFGVLWHKICSDRYLCGGRKC 434 Query: 174 PMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDI 233 P+++ C+V+K RK A +VV NH L LAD + S G E ++ DEAH L Sbjct: 435 PLFQSCYVMKLRKNIETASIVVANHSLLLADAQMDNSTLG----EYQYLVIDEAHNLMSA 490 Query: 234 ASQYFGQSLSSRQLLDLAKDITIAYRT------------------ELKDTQQLQKCADRL 275 AS+ G +LS L L + R ++ +L Sbjct: 491 ASKNLGFTLSYVDLNSLFNQLVYTSRKYSGGFLSQIIQTLQKSMLTTDQKTHIETLCTKL 550 Query: 276 AQSAQDFRLQL-------------GEPGYRGNLRELLANPQ----IQRAFLLLDDTLELC 318 R + + + ++++ A ++ L D ++ Sbjct: 551 TGEIDSQRQVITKLFSLAEDHCVEAKSYNKLRIKDINAFEDIYTLLKELSLAFKDIMKDL 610 Query: 319 YDVA-----------KLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH 367 + K L R + +L + Y+ W E Sbjct: 611 TALDNVFSTLNSNQVKDLDVLKDNLKGYLSRYMETEEIILQLLNPDLDNYALWIENDPNS 670 Query: 368 F------TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-----Q 416 T P+ V + L+ Q IFTSATLS+ F ++ G+ Sbjct: 671 ERNVPISTFCYAPVEVGEHLNRLLYQNIPCIIFTSATLSIRGSFKFFLNQSGLSLVTEKN 730 Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 ++ SPFDY +Q+LL + LP+ Q L I+ N L TS+ Sbjct: 731 VRQSIVESPFDYDKQSLLLIGSFLPEYKDKFFQSQALGCLEQILTTTNVGTMALFTSYKD 790 Query: 477 MRDLAEQFRA---TMTLPVLLQGET-SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTL 532 + + + + P QG+ S+ LL +F + NA+L+ TSSFWEGVD++GD+L Sbjct: 791 LDAVYDHLSDTLFHLNRPFFAQGKGVSRNSLLDEFKKSKNAVLLGTSSFWEGVDIQGDSL 850 Query: 533 SLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRG 592 SL+I+ K+PF P +PL++A ++ D F + LP+A++ L+QG GRLIR DRG Sbjct: 851 SLLILYKIPFQVPSEPLVEALIDKLERENKDSFMHLMLPNALLRLRQGFGRLIRSKTDRG 910 Query: 593 VLVICDNRLVMRPYGATFLASLPPAPR-----TRDIARAVRFLAI 632 V++I D+R+ + YG F LP I+ +F Sbjct: 911 VVLIMDSRVSKKKYGIYFKQILPGRCIELKDEQHLISEIGKFFNP 955 >UniRef50_C5VAL7 ATP-dependent helicase n=14 Tax=Corynebacterineae RepID=C5VAL7_9CORY Length = 681 Score = 474 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 195/664 (29%), Positives = 289/664 (43%), Gaps = 60/664 (9%) Query: 21 REPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKV----IISTGSKALQ 76 R Q M AV A+E + L V+AGTGTGK+ AYL PA+ ++ I+ST + ALQ Sbjct: 19 RPGQVAMTEAVATALESERHLAVQAGTGTGKSLAYLVPAVAHAQETESTVIVSTATIALQ 78 Query: 77 DQLYSRDLPTVSKAL----KYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ------- 125 QL RDLP ++++L + + A++KGR NYLC ++ Q D P Sbjct: 79 RQLVDRDLPRLAESLEPLLDHKPSFAIMKGRQNYLCQNKVAQATALEADDPNSGDADGNA 138 Query: 126 ---------------ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG 170 + + + W+N+T GD + D AW V+ C+G Sbjct: 139 GGAQTALVDESELSWLGRHMARIYEWANETETGDRDSLEPGVPD-LAWRQVSVGAKECIG 197 Query: 171 -SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQ 229 + CP CF AR+KA D DVVV NH L D ++ ++P+ DV+I DEAH+ Sbjct: 198 ANRCPFGDSCFAELARRKARDVDVVVTNHALLAVDAMLD----INVLPDHDVVIIDEAHE 253 Query: 230 LPDIASQYFGQSL-------------------SSRQLLDLAKDITIAY-RTELKDTQQLQ 269 L D + + +L+D+A++ + L Sbjct: 254 LDDRITSMATTEIGVTALNMSARRAGKLGAEGRDEKLIDVAREWEQVMMSIDPGRLTTLP 313 Query: 270 KCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRS 329 + + QD QL + R E P+ L L + L +D L Sbjct: 314 EVLRPTLVALQDGLWQLQQTIGRAPEGEAANEPERHAERLSLANHLTEQHDAVARILSAF 373 Query: 330 ALLDAAFERATLYRTRLKRLKEINQPGYSYWYECT-SRHFTLALTPLSVADKFKELMAQK 388 + + P W R L + PLSV+D + + Sbjct: 374 PAHPSLSPDDATSPEPATPPGSADAPEDVVWAVVDERRGTMLKVAPLSVSDLLRSRLFDH 433 Query: 389 PGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPSPFDYSRQALLCVLRNLPQTNQP 446 + + TSATL++ + + + G+ + L +PFD ++ +L V R++P + Sbjct: 434 -NTVVLTSATLTIGGNFNAMAASWGLPAGSWDHLDAGTPFDPAKSGILYVPRHVPFPGRD 492 Query: 447 GSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQ 506 G + + + +I A GR L +S E R + VL QG+ S G L+ + Sbjct: 493 GLHEKTLSEMYELIMAAGGRTLGLFSSRRAAEQATESLRRRLPFDVLCQGDDSMGALVDR 552 Query: 507 FVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD 566 F N L T + W+GVDV G + SLVI+DK+PF PDDPLL+AR E G + F Sbjct: 553 FAKQENTCLFGTLTLWQGVDVPGKSCSLVIMDKIPFPRPDDPLLQARKEAADAAGRNGFM 612 Query: 567 EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARA 626 EV A + + QG GRL+R DRGV+ I D RL+ + YG L SLPP RT D Sbjct: 613 EVAATHAALLMAQGAGRLLRHTTDRGVVAIMDKRLIEKRYGGFLLNSLPPFWRTTDPKVV 672 Query: 627 VRFL 630 L Sbjct: 673 TGAL 676 >UniRef50_B9KXZ3 Exonuclease family n=2 Tax=Thermomicrobia (class) RepID=B9KXZ3_THERP Length = 982 Score = 473 bits (1218), Expect = e-132, Method: Composition-based stats. Identities = 203/703 (28%), Positives = 317/703 (45%), Gaps = 91/703 (12%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + P+G A+++PG++ R Q +MA AVT + +G L+VEAGTGTGK+ AYL PA+ Sbjct: 251 IGRLYGPEGPFARSLPGYEFRAGQVRMAQAVTNVLNQGGQLLVEAGTGTGKSLAYLLPAV 310 Query: 61 RA----KKKVIISTGSKALQDQLYSRDLPTVSKALKY------------TGNVALLKGRS 104 + V++ST + ALQDQL+++DLP + +AL+ +LKGRS Sbjct: 311 LHAVARGETVVVSTDTLALQDQLFAKDLPLLRRALEAAAEHDPRLADAARFRATVLKGRS 370 Query: 105 NYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTST 164 NYLCL R + +W QT GD + E+ AW V + Sbjct: 371 NYLCLRRWF-LRQREPFTSRAEALLAAKITAWLAQTETGDRAELHLSNEEQLAWAQVAES 429 Query: 165 NDNCLGSDCPMYKD--CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVM 222 CL S C ++ CF+ +AR A A +V+VNH L L+D++ + ++P + Sbjct: 430 EGACLPSRCLFHRRNQCFLYRARATAEGAHIVIVNHALLLSDLLAESR----VLPSYRHL 485 Query: 223 IFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI---------------------------- 254 I DEAH L D A+Q FG ++ + +L + + Sbjct: 486 IIDEAHHLVDEATQQFGFQIAHEDMRELVRRVLGLDHLGRYTGVLGELWSVLAQRPDGSA 545 Query: 255 TIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN---------------LRELL 299 R + L + L Q + L E R LR+ Sbjct: 546 RAVARELGQRLTDLWPRVETLHQHTEMLFHLLAEVAQRHPVENGGYDRQIRITGALRQET 605 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSA---------------LLDAAFERATLYRT 344 ++ + L + R LD RA Sbjct: 606 IWGTVEELGQTVTSHLRTVLSALQWVSHRLEDLPAAIRDELSELVTELDVLERRARELHG 665 Query: 345 RLKRLKEINQPGYSYWYECTSR--HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVN 402 RL+ + + YW ++ +L + PL VA +E++ + + + TSATL+V+ Sbjct: 666 RLQEILFSPRVERVYWLTWRAQPLSVSLNMAPLDVAPLLQEMLFSRVDTLVLTSATLTVD 725 Query: 403 DDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEA 462 + +LG+ A+ L++ SPFDY+ LLC+ ++ + +PG RQ+ L ++ Sbjct: 726 RSFDYIRQQLGLADADELVVESPFDYASSTLLCLAEDMAEPGEPGYQRQVNEALLALLRV 785 Query: 463 NNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQG-ETSKGQLLQQFVSAGNALLVAT 518 GR +L TSH+ ++ + + VL Q + S QL+++ + +++ T Sbjct: 786 TRGRALVLFTSHSALQAAYRAIKRPLEQEGILVLGQRLDGSPRQLVERLKARPATVVLGT 845 Query: 519 SSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLK 578 ++ WEGVDV G+ LS+++I KLPF P DP+ AR E DPF E +P AV+ K Sbjct: 846 NAVWEGVDVPGEALSVLVIAKLPFAVPSDPVFAARCESYS----DPFQEYAVPQAVLRFK 901 Query: 579 QGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTR 621 QG GRLIR D GV V+ D R+ R YG F+ SLPP R Sbjct: 902 QGFGRLIRSTRDYGVCVVLDRRVTTRRYGQLFVQSLPPCTVKR 944 >UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ Length = 934 Score = 473 bits (1217), Expect = e-132, Method: Composition-based stats. Identities = 184/668 (27%), Positives = 297/668 (44%), Gaps = 68/668 (10%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK----KV 66 LA +P F+ RE Q+ M + A+ + ++EAGTGTGKT AYL P++ K V Sbjct: 250 LALNMPKFEKRESQQIMMKEIYTALRDSRFSLIEAGTGTGKTLAYLLPSIYFAKKKEEPV 309 Query: 67 IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQI 126 IIST + LQ Q+ +++P + K + ++ VALLKGR +YLCL + E L + + Sbjct: 310 IISTQTVQLQQQILEKEIPLLQKIMPFSFEVALLKGRKHYLCLHKFEYA-LQEEEKNYDM 368 Query: 127 LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARK 186 + W QT GD W + S + G + CF +A+ Sbjct: 369 ALTKAKILVWLLQTETGDRDELNIPEGGKLLWNRICSDVHSPGGMQSNWFSRCFYQRAKN 428 Query: 187 KAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQ 246 KA+ AD+V+ NH L D +E F + +IFDEAH + + AS+ G+ S Sbjct: 429 KALFADIVITNHALLFQDFSSEEPLFAS----CEHIIFDEAHHIEEAASRTLGEQFSCMY 484 Query: 247 LLDLAKD-----------------------ITIAYRTELKDTQQLQKCADRLAQSAQDF- 282 + +R ++L+ AD L Q + F Sbjct: 485 FQLVLSRLGTLETDDVLSKVYKMMKKSEQASRSTFRMVSHSLKELKFDADELFQMLRAFI 544 Query: 283 RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLEL-------CYDVAKLSLGRSALLDAA 335 Q + N+ + L D EL + + +L + Sbjct: 545 FKQTKQEQGISNMPLIYRYNTEVEKGKLWDSITELTNRFVYDIRKLLTTLEKQVDILQSK 604 Query: 336 FE--------RATLYRTRLKRLKE------INQPGYSYWYECTSRHF----TLALTPLSV 377 E L+++ + + + Y W E ++ L P+ + Sbjct: 605 IEWEMHVVTGEFMHLIELLRKMAQALQLLILEKNSYVTWMETETKGTIHSTVLYGQPVHI 664 Query: 378 ADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPSPFDYSRQALLC 435 A++F + + S IFTSATL+VND + LG+ +L +PSPF + Q L Sbjct: 665 AERFADEFLTEKKSVIFTSATLTVNDSFAYIKEELGLHDFAPNTLQVPSPFRFEEQMKLM 724 Query: 436 VLRNLPQ---TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP- 491 V ++P + ++ + I +A GR +L TS+ M+++ + L Sbjct: 725 VSTDVPFIKKASNEEYIESVSTHIAKIAKATKGRMLVLFTSYEMLKEAYTNLKNDEELEG 784 Query: 492 --VLLQG--ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 +L Q S+ +L+++F ++L+ TSSFWEG+D+ GD LS ++I +LPFT P Sbjct: 785 YLLLTQSVNNKSRSRLIRKFQEFDKSILLGTSSFWEGIDIPGDALSCLVIVRLPFTPPYQ 844 Query: 548 PLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 P+++A+ E + +G D F ++ LP A++ KQG GRLIR + D G + + D RL YG Sbjct: 845 PMIEAKGEWLKNQGEDVFAKLALPQAILRFKQGFGRLIRTSTDTGTVFVLDRRLTSSSYG 904 Query: 608 ATFLASLP 615 FL S+P Sbjct: 905 KYFLQSIP 912 >UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus RepID=Q5WGA7_BACSK Length = 942 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 197/699 (28%), Positives = 305/699 (43%), Gaps = 71/699 (10%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP--- 58 + F+ G +A+ F+ R Q+QM V A E+ ++EAGTGTGKT AYL P Sbjct: 244 DELFSSSGAIARVFDSFEDRPGQKQMMKEVYAAFEEHAHALIEAGTGTGKTLAYLVPSAY 303 Query: 59 -ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL 117 A KK V++ST + LQ+QL RDL ++ + + A+LKGRS+YL L + EQ Sbjct: 304 FAYSKKKPVVLSTYTIPLQEQLLQRDLRLLASIVPFPLRTAVLKGRSHYLDLRKFEQALQ 363 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 + + L W +T GD+ WP+V S ++ LG P + Sbjct: 364 QLENDSYDVCLTKAQLLVWLLETDYGDVEELNLTTGGRSFWPMVQSDPESDLGKYNPWFS 423 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 CF ++R++A AD+++ NH L L D+V ++P + DEAH + AS Y Sbjct: 424 RCFYHRSRRQAKKADLIITNHALLLTDVVQTH----SVLPSYSHAVIDEAHHFQEAASAY 479 Query: 238 FGQSLSSRQLLDLAKD----------------------ITIAYRTELKDTQQLQKCADRL 275 FG + S + + +A + + ++ D L Sbjct: 480 FGLTASFLSVSFAIQRIGDDHHEYGAIARLETLGEQMKQPLALDDAKEGLVRFREDTDEL 539 Query: 276 AQSAQDFRLQLGE----------PGYRGNLRELLANPQIQRAFLLLD-------DTLELC 318 + F L E Y+ E + I + L L+ Sbjct: 540 FRMIHVFALDAQESNATDVGRISYVYKSFSEEGMLWQAILECAMRLQLHGEQVLAALKAA 599 Query: 319 YDVAKLSLGRS-------ALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFT-- 369 Y V + + A A L L Y YW E + Sbjct: 600 YQVVEEKVEAEYESRSLLADTQGAIAAFEETVQLLYELLLEYDDNYVYWIEVEPKGAKNA 659 Query: 370 --LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPSP 425 L P+ V+++ + K S + TSATL+VN + RLG+ ++ + SP Sbjct: 660 TYLYAKPIEVSERLADQFFAKKKSVVLTSATLTVNQSFDYQIDRLGLVDFGVKTKQIESP 719 Query: 426 FDYSRQALLCVLRNLPQ---TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 F Y++QA L + ++P + A+ +A + I E + +L TS+ M++ + Sbjct: 720 FSYAQQAKLLIPYDIPDVRGPDDELFAQDIAIKIWRITEVMQRKALVLFTSYDMLKKVFY 779 Query: 483 Q---FRATMTLPVLLQG--ETSKGQLLQQFVSAGN-ALLVATSSFWEGVDVRGDTLSLVI 536 L ++ QG S+ +LL+ F A A+L T+SFWEG+D+ G+ L +I Sbjct: 780 YVKDLNDEGKLALIGQGVTSGSRMRLLKLFKQAEQRAVLFGTNSFWEGIDLPGNELECLI 839 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 I +LPF P+ PL +A+ME + G +PF ++ LP AVI KQG GRLIR DRG++ + Sbjct: 840 IVRLPFAPPNLPLNRAQMERAKAEGKNPFTDLALPQAVIRFKQGFGRLIRTKGDRGLIFV 899 Query: 597 CDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 D R+V YG TF+ SLP P + R L Sbjct: 900 FDRRIVTTRYGRTFIDSLPDVPV--YEGKLERLLEDHLD 936 >UniRef50_D0MD62 Helicase c2 n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD62_RHOM4 Length = 673 Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 214/657 (32%), Positives = 317/657 (48%), Gaps = 50/657 (7%) Query: 16 PGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKAL 75 PGF+ R QRQMA V +AI +G P +EAGTGTGKT+ YL PAL A+ +V++ST +KAL Sbjct: 24 PGFELRPGQRQMAETVVRAIAEGLPAAIEAGTGTGKTFGYLIPALCAEARVLVSTSTKAL 83 Query: 76 QDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG--DLPVQILSDVILL 133 Q+QL +DLP + K L + ALLKGR NYLC ++E A L Sbjct: 84 QEQLVHKDLPLLGKLLDRPISWALLKGRQNYLCRLKIESGAQEERPVFETRDEAEAFRRL 143 Query: 134 RSWSNQT-VDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 W+ ++ DGD+ LVT D C G CP Y CF+++AR++A D Sbjct: 144 LEWARRSDTDGDLEQFPGRV-TPALRELVTMDADGCGGRQCPFYDTCFLMEARRRAERVD 202 Query: 193 VVVVNHHLFLADMVVKESGFGE--LIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 VVVVNH L L D++++ G L+PEA+V++ DEAH+L ++A +S ++ L Sbjct: 203 VVVVNHALLLQDLMLRARSGGALYLLPEAEVLVIDEAHRLEEMALGALSVYISPYRVERL 262 Query: 251 AKDITIAYRTELKDTQQLQKC---ADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA 307 + + + +L+ AD L + A L +L N ++ Sbjct: 263 RRQALRLPGIDHRTRAELEALGLVADELKRQADTALAGRPAAPLTEALSVVLLN--LRDR 320 Query: 308 FLLLDDTLELCYDVA------KLSLGRSALLDAAFERATLYRTRLKRLKEINQ---PGYS 358 +L D + + A +A + E + + Sbjct: 321 AGVLGDLVGQTMRLQLQRFGGSAQQELQARYEAVLRGLQRLAADAGVITERWRAQAAEHV 380 Query: 359 YWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSV---------------ND 403 + + RH + PL ++++ + + + TSATL+ + Sbjct: 381 LYVQRERRHPVVICQPLDAGGTLQQVLFEAFPTVVCTSATLTTLAQPLRRRAAAGEASDG 440 Query: 404 DLHHFTSRLGIEQA-ESLLLPSPFDYSRQALLCVLRN---------LPQTNQPGSARQLA 453 +F R G + L++P+PFDY RQALL + + Q L Sbjct: 441 PFAYFRRRTGFPEEGLELIVPAPFDYRRQALLYLPPDPARLDPTRIRDARTQQAYEEALI 500 Query: 454 AMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNA 513 ++ ++ A+ GR +L TS MM LAE + PVL+QG + +L++Q + + Sbjct: 501 GEVQALVAASRGRALVLTTSLRMMERLAEALQE-CGYPVLVQGSAPRARLVRQLKAQA-S 558 Query: 514 LLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDA 573 +LVAT +FWEGVDV G+ LSLV+ID+LPF +DP +AR E G D F+ LP A Sbjct: 559 VLVATRAFWEGVDVPGEALSLVVIDRLPFPGREDPYWQARYE---QAGDDWFELEALPQA 615 Query: 574 VITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 ++TLKQG GRLIR DRGV+ + D RL + YG L +LPPA R + I RF Sbjct: 616 LLTLKQGFGRLIRTRTDRGVVALLDGRLQTKYYGRWILDALPPARRVQRIDEVTRFF 672 >UniRef50_C0QZ08 Helicase n=2 Tax=Brachyspira RepID=C0QZ08_BRAHW Length = 846 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 183/697 (26%), Positives = 302/697 (43%), Gaps = 80/697 (11%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA- 62 F +G L++ + ++ R+ Q ++ A +A + L+ EAGTG GK++AYL PAL Sbjct: 135 MFTENGTLSQLLKKYEYRQEQTELVEATIEAFNNNKHLISEAGTGIGKSFAYLIPALLWL 194 Query: 63 ---KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG 119 K +++IST + LQ+Q+ S+D+P++ + + AL+KGR+NY+C++++++ Sbjct: 195 KENKTRIVISTNTINLQEQIISKDIPSIIGGIAPSVKYALVKGRNNYVCIKKVKEGLNDH 254 Query: 120 GDLPVQI-LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 + ++ + W N T DG I+ + W +V D C C +D Sbjct: 255 DKFDFEEQINFFEDIDHWLNITKDGSITDLGY-KPKGELWEMVCCDTDTCTHRKCEYLED 313 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVV--KESGFGELIPEADVMIFDEAHQLPDIASQ 236 C+ K RK+ A +++VNHH+ AD+ + + +G L+P ++ DEAH + AS Sbjct: 314 CYFYKMRKQLNAAQLLIVNHHILCADLSLYAETAGRYSLLPRYTKVLIDEAHNFENSASS 373 Query: 237 YFGQSLSSRQLLDLA-----------------------KDITIAYRTELKDTQQLQKCAD 273 YFG S +L + + + E + L A Sbjct: 374 YFGDEGSKNGILKALFYLSRIKKNKRLGVIESINNMLNEKRALIEKHEYDEILDLINKAH 433 Query: 274 RLAQSAQDF---------------------------------RLQLGEPGYRGNLRELLA 300 L ++ + LRE++ Sbjct: 434 DLTSRVRNVVEDKSKEFITYCHKNIQTKEGLGYKFRISPELVMTSHWQNEGLKPLREMVL 493 Query: 301 --NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYS 358 + L ++ + + + +A ER L + + Y Sbjct: 494 SMTSLVNICDKLYKKFFDIAIEKDFDYEEIAQMSNAYLERLKRQLVSLNAAIDYKKDEYI 553 Query: 359 YWYECT---SRHFTL--ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG 413 W E + L LTP++VA + + + + SATL+V+ + F++RLG Sbjct: 554 RWVETRLTKKGNLILNWHLTPVTVAKNLNDFLYSRFDTVAMYSATLTVSKSFNFFSNRLG 613 Query: 414 IEQAE-----SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCF 468 + E + L SPF+Y A L + ++P + +L + + GR F Sbjct: 614 FDFIEKNKKIEIYLESPFNYEDNARLYIATDMPDVASDTFNDFTSKVLLKVCDVTGGRAF 673 Query: 469 MLCTSHAMMRDLAEQFRATMT---LPVLLQGET-SKGQLLQQFVSAGNALLVATSSFWEG 524 +L TS + + ++ E + + L Q + + LL F ++ N +L SFWEG Sbjct: 674 ILFTSFSSLMNVYENTSEKLKSKNINALAQTASIHRHTLLDMFKASSNNVLYGVDSFWEG 733 Query: 525 VDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRL 584 VDV G L +VII KLPF P DP+ + R GG+ F + LP AVI KQG GRL Sbjct: 734 VDVAGKNLEVVIIPKLPFAVPTDPISEGRYRYIEENGGNAFLDYALPFAVIKFKQGFGRL 793 Query: 585 IRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTR 621 IR DDRGV+ + D RL + YG F+ SLP A R Sbjct: 794 IRSKDDRGVVFVLDKRLYTKTYGTQFIQSLPNAKVLR 830 >UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67NP5_SYMTH Length = 958 Score = 463 bits (1192), Expect = e-129, Method: Composition-based stats. Identities = 209/720 (29%), Positives = 313/720 (43%), Gaps = 89/720 (12%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + G +++AI ++ R Q ++A AVT++ G L++EAGTGTGK+ AYL PA Sbjct: 242 VLSVLGSGGAISEAIAHYEHRPQQLELAEAVTRSFNDGAHLLMEAGTGTGKSLAYLVPAF 301 Query: 61 RA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYT----GNVALLKGRSNYLCLERL 112 +KV IST + LQ+QL+ +D+P + AL T AL+KGRSNY+CL + Sbjct: 302 AWARANGEKVAISTHTITLQEQLWEKDIPFLQSALAGTPLEGVEAALVKGRSNYICLRKW 361 Query: 113 EQQALAGGDLPV-QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGS 171 E+ A+ L + +I L +W +T GD S E+ + W V S + CLG Sbjct: 362 EEAAVGADFLTSPEERRFLIRLAAWLAETETGDRSELNLSGEEERFWRTVQSETETCLGP 421 Query: 172 DCPMYKD-CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQL 230 C ++ CF +AR++A DA V+V+NH L AD+ +++P +I DEAH L Sbjct: 422 KCKWFRSHCFAFRARRRARDAQVLVLNHALLFADIAA----GNQVLPPFRHLIIDEAHHL 477 Query: 231 PDIASQYFGQSLSSRQ----------------LLDLAKD----------------ITIAY 258 +A+Q G +L S L L + Sbjct: 478 EAVATQNLGVNLESWDITGALLLLYRAPGQGLLPQLRRRLGRGEAIPARPPVGLPSEDLI 537 Query: 259 RTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQ--RAFLLLDDTLE 316 + Q + D L + D G G R L ++ + L+ Sbjct: 538 DKLVGLVQHCRAATDELFRLCADLVEARGRSEEEGGARALRLTDAVRTGPLWEALEQARA 597 Query: 317 LCYDVA---------------------KLSLGRSALLDAAFERATLYRTRLKRLKEINQP 355 + + + R+ Sbjct: 598 NAVHRLRTLAAGLALLAEALELQDPPLADADALLVDIQKQNGILIQSTKAIDRVLLEPAE 657 Query: 356 GYSYWYECTSRH----FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSR 411 G W E R L P++V D + + + S I TSATL+V + H R Sbjct: 658 GEVTWIESAQRGDRLRVALRAAPINVGDILRADLFGRMRSVIMTSATLTVGESFAHLKER 717 Query: 412 LGI-----EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGR 466 LG+ ++ +L SPF Y QALL V +LP + + LR + GR Sbjct: 718 LGLSRLPPDRLREGVLSSPFAYREQALLLVPEDLPNPKEGDFTQAAVDFLRRFLIQAGGR 777 Query: 467 CFMLCTSHAMMRDLAEQFRATMTLPVLLQGET----SKGQLLQQFVSAGNALLVATSSFW 522 +L TSH +R + + + + LL S+ +L+ +F + +L ++SFW Sbjct: 778 TLVLFTSHRQLRQVYQALKDDLEAEGLLLLGQGLDGSRSRLVAEFRAGERTVLFGSASFW 837 Query: 523 EGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVG 582 EGVD+ G+ LS V++ +LPF PDDP+++AR+ED RG F + LP AVI KQG G Sbjct: 838 EGVDIPGEGLSAVVMVRLPFNPPDDPVMEARIEDLERRGLSSFAHLSLPQAVIRFKQGFG 897 Query: 583 RLIRDADDRGVLVICDNRLVMR--PYGATFLASLP-----PAPRTRDIARAVRFLAIPSS 635 RLIR DRGV+++ DNRL R YG FL SLP I RA+ +L + Sbjct: 898 RLIRTRGDRGVVIVLDNRLSPRGSRYGLQFLRSLPGPAVFRGRTDEVINRAMAWLNLGDE 957 >UniRef50_A0YCJ4 Helicase c2 n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCJ4_9GAMM Length = 643 Score = 463 bits (1191), Expect = e-129, Method: Composition-based stats. Identities = 205/648 (31%), Positives = 306/648 (47%), Gaps = 25/648 (3%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 + A G + + P F RE Q+QMA+ V Q+I+ L+VEA +G+GKT AYL P + Sbjct: 8 DELLAAGGPIDRQWPEFVAREGQQQMAIRVQQSIDDQVSLLVEAPSGSGKTLAYLVPIVM 67 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLE-------RLEQ 114 ++ IIST S+ LQ QL+ DLP + L VALL+GRSNYLC RL Sbjct: 68 TAQRAIISTASRYLQSQLFKHDLPLIQGLLGSHRKVALLQGRSNYLCPYYLDKNTLRLRS 127 Query: 115 QALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCP 174 + + G Q + L T G++S ++ P VTS+ D+CL + CP Sbjct: 128 EQESSGGYDRQSYQQLTRLSQRFRNTGIGELS-LLAPELAPGLLPHVTSSRDDCLSTQCP 186 Query: 175 MYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIA 234 + C ++ AR++A AD+V+VNH L +D V+++ G L+P A V++ DEAH++ D A Sbjct: 187 DFSRCPLMAARQQAEGADIVIVNHSLLFSDQVMRKEQLGSLLPSAGVVVVDEAHRISDFA 246 Query: 235 SQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN 294 G LSS L L +D++ A + + + + ++L + Sbjct: 247 QTIVGLRLSSGTLKSLCRDVSRAIQVGAPEQRLILSRLEKLQSGLSKLDAHIPSAKPYHR 306 Query: 295 LRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ 354 + + Q+ A L L + + +R + Sbjct: 307 QQHVDVINQLSIALRQLRRDLNIVKQRDHSFVQLEIRTGLIVDRLNEIVSYKG------- 359 Query: 355 PGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 W + F + PL+++ KEL Q P SWIFTSATL+VN F LG+ Sbjct: 360 ---LCWVQGRENGFVIQTIPLTISLLIKELFQQSPCSWIFTSATLTVNSSPDRFKRVLGL 416 Query: 415 EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSH 474 + S D+ RQA+L + + L P++ A GR L +S+ Sbjct: 417 DAVNFYQASSDIDFQRQAMLYTPKIPVDPRKDEFYDYYVEQLLPLLAAAKGRVLCLFSSY 476 Query: 475 AMMRDLAEQFRATMTLPVLLQ--GETSKG----QLLQQFVSAGNALLVATSSFWEGVDVR 528 + A + R VL+Q + +L+ Q + +L+AT SFWEGVD+ Sbjct: 477 RGLNATASRLR-RKGKAVLIQRSPRDPRRVDNYKLVAQLKNQPQGILLATGSFWEGVDLS 535 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 G LS V IDKLPF DDPL++ R ++ G D F E LPDA++ L+QG GRL+R Sbjct: 536 GFPLSAVAIDKLPFAHRDDPLIQLRSQELSGHGVDSFSEYLLPDAIVRLRQGCGRLLRRV 595 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR 636 DRGV++I D RL + YG F+ASLP R ++ F + S Sbjct: 596 SDRGVIMIADPRLQSQAYGQDFMASLPSMRRAVTVSEIESFFSESKSE 643 >UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0D2_9BACT Length = 965 Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats. Identities = 193/678 (28%), Positives = 308/678 (45%), Gaps = 69/678 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + F DG + + + G++ RE Q QM AV ++ G LVVEAGTG GK+ AYL PA+ Sbjct: 268 IESLFGTDGPIGRELRGYEVREQQLQMLRAVGDSLMGGVHLVVEAGTGVGKSLAYLTPAV 327 Query: 61 RA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 ++V++ST +K LQ+QL+ +D+P + + L +VALLKGR NY+C R Q Sbjct: 328 YFAVENGERVVVSTNTKNLQEQLFLKDVPFLERVLDIDFSVALLKGRGNYICQARWRQVL 387 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 G L S ++ + W +T GDIS + + W +++ CLG CPM Sbjct: 388 EKG--LSSSERSQLLPVALWEQETRSGDISENAAFRQYGYVWNRISADGGPCLGQKCPMR 445 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 + C+++KARK + A +V+VNH L +D ++ E +I DEAH + +A++ Sbjct: 446 ETCYLLKARKASQAAHLVIVNHSLLFSD----TEADNRILGEYSYLICDEAHNMEQVATE 501 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCA---------------DRLAQ---- 277 + G+ + + + ++ D ++ +RLA Sbjct: 502 HLGKRSNVWRARAMLDNLYRNEGGPSGDLGEVMGALSGTDGALLESATAGVERLASDVTA 561 Query: 278 ------------SAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLS 325 +A+ L G G LR P L L VA+ + Sbjct: 562 ASAAVETFFTALAARHIDLNDGREVEFGKLRYRQEAPVSALLEEELAGVLAALSTVARGA 621 Query: 326 LGRSAL---------------LDAAFERATLYRTRLKRLKEINQPGYSYWYE----CTSR 366 + L L R + L+ + E PG +W + Sbjct: 622 ESVADLITDSELDRAESFVQNLTFHAARVREFAADLEYVAEAADPGSVFWLDVRTFRDVF 681 Query: 367 HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-----QAESLL 421 L P+SVA+ + + + S I TSAT++V+ R+G++ + +L Sbjct: 682 ECELRSAPVSVAEMMGDFLYSRVDSLIATSATMTVDGSFDFVMERMGLDLIPDWKVLTLD 741 Query: 422 LPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 + SP+DY Q++ V LPQ + G + ++ ++ + E G +L T+ + + + Sbjct: 742 VGSPYDYDAQSIAVVAGYLPQPSSSGFNQTVSRLVVKLAERAQGGTLVLFTARSALDAVF 801 Query: 482 EQFRATM---TLPVLLQGETS-KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 + + VL QG LL+QF +++L+ATSSFWEGVDV G +L ++I Sbjct: 802 KSVLDPLTSRGKLVLAQGHGGASSALLEQFAREVDSVLLATSSFWEGVDVPGRSLEQLVI 861 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 KLPF P DP+++A E G + F +P I L+QG GRLIR D G ++ Sbjct: 862 VKLPFPVPRDPVVEAHCERYEADGENSFGRYMIPRTAIRLRQGFGRLIRSTTDSGAVIFL 921 Query: 598 DNRLVMRPYGATFLASLP 615 D+RL R YG L LP Sbjct: 922 DSRLSTRAYGERLLEQLP 939 >UniRef50_B1ZV97 Helicase c2 n=2 Tax=Opitutaceae RepID=B1ZV97_OPITP Length = 698 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 206/679 (30%), Positives = 311/679 (45%), Gaps = 47/679 (6%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + FA G L A+ + R Q QM AV A PL+ EAGTG GK+ AYL P Sbjct: 24 VARVFAEGGWLQDALQ-LEHRPEQEQMGRAVAAAFRDDAPLLFEAGTGVGKSLAYLVPGI 82 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYT--------GNVALLKGRSNYLC 108 A+ +++I+ST + +LQ+QL ++DLP + + +L G+SNYLC Sbjct: 83 LHAIDQSRQLIVSTHTISLQEQLETKDLPICRRLFRSNPALARYADFKATVLVGKSNYLC 142 Query: 109 LERLEQQALAGGDLPVQI-LSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDN 167 RL L ++ + +W+ +T G + W +V + + + Sbjct: 143 TTRLAHALADRATLFADAEYDELQRIAAWAGKTETGLRHELRP-PPRPEVWDVVNADSSS 201 Query: 168 CLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLA-------DMVVKESGFGELIPEAD 220 C C + CF +AR + A+V+VVNH L A + ++ D Sbjct: 202 CSRKHCDC-EKCFYQRARARLRAANVIVVNHALLFALINAGGAQAHGATTDARGVLFPDD 260 Query: 221 VMIFDEAHQLPDIASQYFGQSLSSRQLLDLAK--------DITIAYRTELKDTQQLQKCA 272 ++ DEAH +PD+A++ FG SLSS + K + R + Q + Sbjct: 261 FVVLDEAHTVPDVATENFGLSLSSYGVERALKYLYNPRTQRGLLRKRGGAEAQQLVLDAL 320 Query: 273 DRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA-FLLLDDTLELCYDVAKLSLGRSAL 331 D Q L P +RE A + L L D R L Sbjct: 321 DASRQFFDFIANSLLTPRPVVRVREPEAAEPLLDGPLTALHRLLGKLADKLDEGRERDEL 380 Query: 332 LDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH---FTLALTPLSVADKFKELMAQK 388 L+ R + + + PG+ YW E + R TL P+ VA + ++ + Sbjct: 381 LEQKL-RIKSLQAGVTEWLTLGDPGHVYWAERSGRKQTIVTLRSAPIDVAPELRQHLFGC 439 Query: 389 PGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGS 448 S + TSATL++ ++ F +R+G + A ++ + SPFD+ + V ++P + + Sbjct: 440 NTSVVCTSATLAMGGEIAPFAARIGADDARAVAVKSPFDFEHHMRVYVATDVPLPSPQEA 499 Query: 449 ---ARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA---TMTLPVLLQG-ETSKG 501 L +R E G +L TS+A MR +A P ++QG E S+ Sbjct: 500 RLALDALTDYIRFCTERVRGGSLVLFTSYADMRAIATTLEPVYRAAGRPFMMQGAELSRT 559 Query: 502 QLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRG 561 +L QQ GNA+L T SFW GVDV GD L+ VII +LPF P P+ +AR + R RG Sbjct: 560 ELAQQMRHLGNAVLFGTDSFWTGVDVPGDALAQVIITRLPFDPPTHPITEARCDHIRDRG 619 Query: 562 GDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASL--PPAPR 619 G+PF+E+ LPDA+I +QGVGRLIR A DRG++ I D+R++ + YG F+ L P R Sbjct: 620 GNPFNELTLPDALIKFRQGVGRLIRTATDRGLITILDSRVLAKSYGRLFVECLPNPNFMR 679 Query: 620 TRDIARAVRF--LAIPSSR 636 R RF A P +R Sbjct: 680 LSRRDREERFLPFASPPAR 698 >UniRef50_A8LYP2 Helicase c2 n=13 Tax=Actinomycetales RepID=A8LYP2_SALAI Length = 699 Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats. Identities = 209/656 (31%), Positives = 288/656 (43%), Gaps = 56/656 (8%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 A+PG R Q++M A+ A+ + L+V+AGTGTGK+ AYLAPAL V++ST + Sbjct: 57 AVPGGAARPGQQEMTTAIEAAVSAREHLLVQAGTGTGKSLAYLAPALTVDGPVVVSTATL 116 Query: 74 ALQDQLYSRDLPTVSKA----LKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV----- 124 ALQ QL DLP ++ A L A+LKGR +YLCL RL+ + Sbjct: 117 ALQSQLVDHDLPRLADAVEPLLGRRPTFAVLKGRHHYLCLARLDNATEEEPGDTLFDQPT 176 Query: 125 -----------QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGS-D 172 ++ V LR W+ +T GD +D QAW LV+ C+G+ Sbjct: 177 PSGTTWLGEAGRLGRQVQRLRDWAEKTDTGDRDELDPGVDD-QAWRLVSMPARECVGAAR 235 Query: 173 CPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPD 232 CP +CF +R +A +AD+VV NH L DM+ ++P +++ DEAH+L D Sbjct: 236 CPFGAECFADASRARAREADIVVTNHSLLAVDMLAGRH----IVPPHQLLVVDEAHELAD 291 Query: 233 IASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYR 292 S L + + R E + L D LA + G Sbjct: 292 RVSSAAQAELVPELIDRSTRRARPLLRPETAEA--LTTAGDALAVGLAEAPAGRLTAGLP 349 Query: 293 GNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALL---DAAFERATLYRTRLKRL 349 L+E A LLD D +RL Sbjct: 350 APLQE---------ACTLLDAATRAALDAIGEIKADDPDPVRKQQVKAVLDELSGTAQRL 400 Query: 350 KEINQPGYSYWYECTS--RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHH 407 + W E L + PLSVA + + + + TSATL++ Sbjct: 401 LDEADHD-VAWVERNDVTGRRALVVAPLSVAGTLATHLYED-RTVVATSATLTLGGRFDS 458 Query: 408 FTSRLGIEQA-----------ESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAML 456 LG+E +SL + SPFDY+RQ +L V +LP+ + G A L Sbjct: 459 VARALGLEAPAEAPVTSGPGWQSLDVGSPFDYARQGILYVAAHLPRPSASGLPDAAGAEL 518 Query: 457 RPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLV 516 ++EA GR L +S + AE RA LPVLLQGE + L+++F ++ L Sbjct: 519 LGLVEALGGRTLGLFSSRRAAQQAAELLRARTDLPVLLQGEQALPLLVRRFREEQSSCLF 578 Query: 517 ATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVIT 576 S W+GVDV GD LV+ID+LPF PD+PL AR GG F V +P A + Sbjct: 579 GVMSLWQGVDVPGDACQLVVIDRLPFPRPDEPLAAARAAAVDADGGSGFAAVSVPIAAVR 638 Query: 577 LKQGVGRLIRDADDRGVLVICDNRLVM-RPYGATFLASLPPAPRTRDIARAVRFLA 631 L QGVGRLIR DRGV+ + D+RL R YG SLPP T A L Sbjct: 639 LAQGVGRLIRATGDRGVVAVLDSRLETARGYGPFLRRSLPPFWYTTRPDVARGALE 694 >UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus coagulans 36D1 RepID=C1PF24_BACCO Length = 930 Score = 457 bits (1175), Expect = e-127, Method: Composition-based stats. Identities = 171/687 (24%), Positives = 277/687 (40%), Gaps = 71/687 (10%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA-- 59 D + A + G + R Q +M V +A + + +EAGTG GK+ AYL PA Sbjct: 239 QDAVEKESWFAASGTGMEARPAQFEMMDHVREAFSVEEHVALEAGTGIGKSLAYLVPAAF 298 Query: 60 --LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL 117 + +K V+IST + AL+ QL ++++ + + LK LLKGRS+YL L + EQ Sbjct: 299 QAISEQKPVLISTYTVALEHQLLNKEIKRLEQMLKTPVRTVLLKGRSHYLHLFKFEQSLK 358 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 D + + + W +T GD+ W + + D P Sbjct: 359 EP-DRQYDAVFAKMQILVWLTETESGDLDELHLSGGGKHFWQRIKQDGWHTDKKD-PWKS 416 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQY 237 F + A+ A AD+ V NH + A++ + + +I DEAH+L A + Sbjct: 417 RDFYLYAKACAASADIAVTNHAMLCAELERDQ----SVFDGFQYVIIDEAHRLEQAARET 472 Query: 238 FGQSLSSRQLL----------------DLAKDITIAYRTELKDTQQLQKCADRLAQSAQD 281 G+ S Q+ L K + + L D Sbjct: 473 IGKRASYNQMKYMMARLGLYEQKQLFYKLEKVMEKYGLKASLHAFECDAILQALDAELDD 532 Query: 282 FRLQLGEPGYRGNL-------------RELLANPQIQRAFL--------------LLDDT 314 L + R N +E Q L L++ Sbjct: 533 LFGMLAQKVLRANRETNGYQKIKLRIKKENWKQKAWQAVLLCTERIRASMKEISQALEER 592 Query: 315 LELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLK----EINQPGYSYWYECT----SR 366 L ++ A ++ + +R L + W E Sbjct: 593 LSQLLSEKQMKEQALAFIEEMYSFLEDWRLLRDNLAIFAGQNGGDENVVWVEGDLRALPN 652 Query: 367 HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE-SLLLPSP 425 + P+ + ++ + S + TSATL+V +F G+ ++ +PSP Sbjct: 653 SLVIYCQPVHAGEILQKAFFSRKKSVVLTSATLTVGGSFRYFLDETGLAHTTKTVRIPSP 712 Query: 426 FDYSRQALLCVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 F + RQ + +LP A ++A L + EA GR +L TS +++++ Sbjct: 713 FRFDRQVQFIIPNDLPDIGSVSIEDFAEKMAGYLLAVAEATKGRMMILFTSFDLLKNVYH 772 Query: 483 QFRATM---TLPVLLQG--ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 + + + QG S+ +L + F G A+L SSFWEGVD+ GD LS +++ Sbjct: 773 LMKESGMLEDYMFIAQGISSGSRSRLTKSFQKFGKAILFGLSSFWEGVDIPGDDLSCLVM 832 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 +LPF PD+P+ +A+ + R +G +PF LP+AV+ KQG GRLIR DRG+ ++ Sbjct: 833 ARLPFLPPDEPVTEAKSDYFRAKGKNPFSAYALPEAVLRFKQGFGRLIRTRHDRGIFLVL 892 Query: 598 DNRLVMRPYGATFLASLPPAPRTRDIA 624 D R+ YG F SLPP R R + Sbjct: 893 DRRIETATYGPAFTKSLPP-VRIRHLN 918 >UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH Length = 939 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 172/703 (24%), Positives = 298/703 (42%), Gaps = 72/703 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + G+L++ + ++ R Q++M+ + A ++EAGTGTGK+ AYL PA+ Sbjct: 240 LDTIYEDGGKLSEHLSMYEKRAGQQEMSETIYDAFTSSNHALIEAGTGTGKSLAYLLPAV 299 Query: 61 RA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 +KVIIST + LQ QL ++P + ALLKG+++Y+ LE+ + Sbjct: 300 YYAVKQNQKVIISTHTTQLQSQLLEEEIPLIHAISDIPFQAALLKGKNHYISLEKFSIEL 359 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 G I +L W +T GD+ + +++ + + P + Sbjct: 360 YEQGQDNYDIALTKAMLLIWITETNTGDVEEVQLPTSGYIFFRKISADTEKAVNPQSPWF 419 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 + + +ARKKA A++++ NH L DM +P +I DEAH + A+ Sbjct: 420 QYSYYQQARKKAQRANIIITNHALLCTDMF----NDYAFLPSYQRVIIDEAHHFEEQAAH 475 Query: 237 YFGQ------------SLSSRQLLDLAKDITIAYRTELKD---------TQQLQKCADRL 275 ++G L S + L + AY+ D + ++ + L Sbjct: 476 HYGLKMDYMSMQFTCNQLGSSEEDKLFGNFVQAYQLSNSDIPLYEWNDTLKSAKQEIEDL 535 Query: 276 AQSAQDF-----------------RLQLGEPGYRGNLRELLAN------PQIQRAFLLLD 312 Q+ + + ++ G+ +++ + + +L Sbjct: 536 FQAIYYYVSKQHLSNQALSDVGRIQYRMDTEKETGDSWQVILDMSSRLSLYFRDLIHILF 595 Query: 313 DTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKR-LKEINQPGYSYWYECTSRH---- 367 + L E Y L+ + W E + Sbjct: 596 MVEQRINQEDNSEKNHREELLQMVELLQRYIDGLELMFYSGGEVEQIKWIEIDKKGQNHS 655 Query: 368 FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL--LLPSP 425 L P VA+ + + S + TSATL++N RLG+ + + SP Sbjct: 656 VFLYSEPADVAELLENEFFHEKESVVMTSATLTMNHSFSFMQKRLGLSSHSCITEQIESP 715 Query: 426 FDYSRQALLCVLRNLPQT---NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 F Y +Q + + + P N +A + + E +GR +L TS+ M+R Sbjct: 716 FAYDQQVQMFIPNDFPDIKYGNIDDFVYAVAEAIISLAEITSGRMLVLFTSYDMLRKAYY 775 Query: 483 QFRATM---TLPVLLQG--ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 + M ++ QG S+ +L + F S A+L+ TSSFWEGVD+ GD LS ++I Sbjct: 776 VLKEAMEKDKYMLIGQGITSGSRARLKKNFQSFDQAILLGTSSFWEGVDIPGDDLSSLVI 835 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 +LPF P+ P+++A+ + + +PF E+ LP+AVI KQG GRLIR ++DRG++ +C Sbjct: 836 VRLPFQPPNHPVIEAKSAMLKKQKQNPFMELSLPNAVIKFKQGFGRLIRSSNDRGIVFVC 895 Query: 598 DNRLVMRPYGATFLASLPPAPRTRD-----IARAVRFLAIPSS 635 D R+V YG F S+P P D I +A ++ + Sbjct: 896 DARIVNARYGKYFTESIPKVPIHYDSTHKLIDKAEQWYKKNDA 938 >UniRef50_C0W0F4 ATP-dependent DNA helicase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0F4_9ACTO Length = 640 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 176/649 (27%), Positives = 294/649 (45%), Gaps = 41/649 (6%) Query: 1 MTDDFAPDGQLAKAIPGF--KPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP 58 M+++ + L + + F R Q+QM V A+ + + +++AGTGTGK++ YL P Sbjct: 1 MSEETSELDLLDEVVSSFGGSARAGQQQMVRTVASALAEDKIALIQAGTGTGKSFGYLVP 60 Query: 59 ALRA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE- 113 ++ K++VI++T + ALQ Q+ +D P V++ L VA LKG +NYLCL ++E Sbjct: 61 VMQRVANTKERVIVATATLALQRQILEKDAPCVNEHLPKPVKVAALKGWNNYLCLHKVEG 120 Query: 114 -----------QQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVT 162 +++ +R W+ QT GD D Q W V+ Sbjct: 121 GYAEEYALFPSDLVDFAPKTSSATGKEIVRVREWAKQTDTGDRDDLKPGVSD-QVWRQVS 179 Query: 163 STNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVM 222 ++ CLGS CP+ +CF AR++A +A+VV+ NH + + + ++ E D + Sbjct: 180 VPSNECLGSTCPLRDECFPALARERATEANVVITNHAVL----GIHATSENKMCGEFDAL 235 Query: 223 IFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDF 282 + DEAH L I L + + + + +++ + + Sbjct: 236 VVDEAHDLMRIVHSQATLRLHPGAAVTKMRWAGRLAGVATTAVETSLQGLEKVLEGFSEG 295 Query: 283 RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLY 342 L+ ++Q A LLD + L S +A A Sbjct: 296 LLR-------------TRPEELQDAMRLLDTEVRLVLSSINTSDKDAAEKKLATGVVAEL 342 Query: 343 RTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVN 402 L + ++ + L PL V+ + + + + TSATL + Sbjct: 343 AEFLDAWDRPVESMITWVTQRDEDPAVLNCVPLDVSAPIAFNLFSE-KAVVLTSATLKLG 401 Query: 403 DDLHHFTSRLGIEQAES----LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRP 458 S +G+ + ES + + SPFD ++Q +L V LP + G + + L Sbjct: 402 GSFGPLASEVGVYRVESELEMVDVGSPFDPAKQGILYVAAELPAPPRSGVSEEQLQTLLR 461 Query: 459 IIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVAT 518 + EA+ G L +S + A+ R + LPVLLQGE L+Q+F LV T Sbjct: 462 LTEASGGGMLGLFSSKRAAQQAADYLRESTDLPVLLQGEDQLSNLVQEFREDSQTCLVGT 521 Query: 519 SSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLK 578 S W+G+D++G LV++D++PF P DP+++AR ++ +G +PF V L A + + Sbjct: 522 MSLWQGIDIKGPNCRLVVMDRIPFPVPSDPVIEARNDEAARKGQNPFQVVSLSHASLLMA 581 Query: 579 QGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAV 627 QG GRL+R DD+G++ + D+RL +PYG SLP T I AV Sbjct: 582 QGAGRLLRSVDDQGMVAVLDSRLATKPYGMFIRKSLPQLWPTTSIEVAV 630 >UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2 Tax=Exiguobacterium RepID=B1YHQ6_EXIS2 Length = 937 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 188/690 (27%), Positives = 315/690 (45%), Gaps = 74/690 (10%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----LRAKKKV 66 + PG++PR Q +M V Q++++ PL+VEAGTGTGK+ YL PA + + + Sbjct: 248 FPQLFPGYEPRTGQLEMMRHVYQSLDQETPLLVEAGTGTGKSLGYLVPAAHYAIEHETPI 307 Query: 67 IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQI 126 I+ST + LQ+QL++RDLP + + + ++ LLKGRSNY+ L + + L+ + P Sbjct: 308 IVSTHTIQLQEQLFARDLPLLRQLFEAPVDITLLKGRSNYMDLRKF-EFFLSETEEPYNF 366 Query: 127 LSDVILLRSWSNQTVDGDISTCVSVAE----DSQAWPLVTSTNDNCLGSDCPMYKDCFVV 182 +L W QT GD+ + L+ S + + LG P Y F Sbjct: 367 TLAKAILLVWLTQTETGDLEEVSLPGGAAQGNIAIKQLIQSDSQSQLGRFDPWYSRDFFH 426 Query: 183 KARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 A ++A A ++V NH L +D+ + ++P+ +I DEAHQ+ ++AS +FG Sbjct: 427 HAVRRAKQATIIVTNHALLFSDIQYE----AGVLPKGCPLILDEAHQIEEVASHHFGLVF 482 Query: 243 SSRQLLDLAKDITIAYRTEL------------------KDTQQLQKCADRLAQSAQDFRL 284 + + + + +L ++ + + +L + A Sbjct: 483 DGHSFDRIFRQLGFSSDKKLLTRLISLSDQYDLTELVEAHSETIDETLTKLLEEADGLLT 542 Query: 285 QLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERAT---- 340 + G R+ ++ F LD ++ + AK L A Sbjct: 543 IIQAYGLELASRKERREGRVTVRFKRLDQSMRAVQESAKRVELVLRRLRQAIRAIHKLFH 602 Query: 341 ---------------LYRTRLKRLKEINQ----------PGYSYWYECTSRHFTL---AL 372 +T + +L+E+ Q W E T+++ L Sbjct: 603 DQREHMSYRERSVVADLKTVIGQLEEVEQAIFETMLAPHDETVSWIETTAKNRKLTRIYT 662 Query: 373 TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES--LLLPSPFDYSR 430 P+ ++++ + K + I TSATL+V++ RLG+ + E+ ++PSPF Y+ Sbjct: 663 QPIDISNRLHREVFSK-RTCILTSATLTVSNKFQFIEQRLGLSELETRRFIVPSPFGYAE 721 Query: 431 QALLCVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT 487 + L + +LP + +A + I E GR +L TS+ M+R + + Sbjct: 722 KVRLMIPTDLPLLQDVPQATYSEVIADAIIRIAEVTEGRMLVLFTSNEMLRQTHDATKMA 781 Query: 488 MT--LPVLLQG--ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFT 543 + +L QG + S+ +L++QF +L T+SFWEGVDV GD LS ++I +LPF Sbjct: 782 LPERFTLLSQGITQGSRQRLMKQFKQLDACILFGTASFWEGVDVPGDDLSCLVIVRLPFA 841 Query: 544 SPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 PD P+++AR E +G F E LP A+I KQG GRLIR +DRGV+ + D R+ Sbjct: 842 PPDQPIVQARSEQIEQQGKSSFFEYSLPQAIIRFKQGFGRLIRTTNDRGVVFVFDRRIET 901 Query: 604 RPYGATFLASLPPAPRT-RDIARAVRFLAI 632 YG F+ SLP P + + L + Sbjct: 902 TRYGKRFVTSLPNVPLLAKPLDELTAELEL 931 >UniRef50_B0S8U2 DNA helicase n=6 Tax=Leptospira RepID=B0S8U2_LEPBA Length = 661 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 185/662 (27%), Positives = 302/662 (45%), Gaps = 41/662 (6%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA- 59 ++ F L K ++ R+ Q +M+ A+ A + G V+EAGTG GK+ AYL P+ Sbjct: 3 VSSVFTKQ--LPKLWKDYEVRKEQMEMSQAIESAFQTGSNWVIEAGTGVGKSLAYLIPSA 60 Query: 60 ---LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 L + V++ST +K+LQDQL +D+P VS+AL N + G +NYLC + + Sbjct: 61 LFSLENECTVVVSTETKSLQDQLLYKDIPLVSEALGVPINAMVALGANNYLCKRKYNRVM 120 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 G P ++ S + +W QT G + +S W V +DNCLG +CP + Sbjct: 121 ERGDFGP-EMESSLPYFVNWEKQTESGIRAEYDGFLSNS-FWSSVARESDNCLGRNCPNF 178 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 + + K A++++VNHHL + + G +L+P ++ DEAH P+I + Sbjct: 179 SSSYYFLEKDKWKKANILIVNHHLLASHLA----GDFKLLPPFSQLVIDEAHVFPEIVGK 234 Query: 237 YFGQSLSSRQLLDLAKDITIAYRT-----ELKDTQQLQKCADRLAQSAQDFR-------- 283 FG + +L+L + + +LK +++ K + A D Sbjct: 235 AFGSEIRYEFILNLLHYLYFPEKRTGLVLKLKSNEKIIKQIEASISYANDLFRMLLSAIP 294 Query: 284 LQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSAL------LDAAFE 337 LQ + R R L N ++ L TLE K L+ Sbjct: 295 LQFNQFSSRHTERIKLDNGALEDTLADLSSTLEGLLSKYKKDSDDMEEKELALGLEMVAG 354 Query: 338 RATLYRTRLKRLKEINQPGYSYWYE-----CTSRHFTLALTPLSVADKFKELMAQKPGSW 392 + L + P +W E + L P + + + S Sbjct: 355 NLKKVSSFLTDFRLKTNPNLVFWIEPPPQMAKDPFYYLFSQPKNTDEILANTLFPNMDSV 414 Query: 393 IFTSATLSV-NDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQP--GSA 449 + TSATLS + +F +G + ++ L SPF Y +LL V + + + Sbjct: 415 VLTSATLSPTAGNFQYFLKEVGTSEVKTKTLNSPFQYQTHSLLFVPKQIADPVSDPKRNK 474 Query: 450 RQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVS 509 L+ + +++ + G F+L TS+ ++ +L E+ R + P+ Q E ++F++ Sbjct: 475 IDLSYWITRLLKLSEGDAFVLFTSNKLLSELYEEIRNLVPYPIFAQTEMGPIAAKREFLA 534 Query: 510 AGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQ 569 N++L SSFW+GVD++GD L VI+ KLPF P +P+L+A+MED +G PF E+Q Sbjct: 535 NKNSVLFGVSSFWQGVDIKGDKLRNVIVTKLPFQVPTEPVLQAKMEDMEKKGKSPFWEMQ 594 Query: 570 LPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAP--RTRDIARAV 627 +P + L+QG GRLIR D G++ I D R+ + YG L SLP T Sbjct: 595 VPKTCLLLRQGFGRLIRSQSDTGMVSILDPRIHTKSYGKNVLQSLPKGVPLITEFNDLER 654 Query: 628 RF 629 +F Sbjct: 655 KF 656 >UniRef50_D1AXI2 Helicase c2 n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AXI2_STRM9 Length = 667 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 180/648 (27%), Positives = 309/648 (47%), Gaps = 54/648 (8%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKKVIISTGS 72 F+ RE Q M+ + + I+ P+++EA TG+GKT YL PA+ K ++IST + Sbjct: 14 DFEKRENQINMSKIIKKGIDNDMPVLLEAETGSGKTLGYLIPAIDFALTEMKNIVISTNT 73 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 LQDQ+ +++LP + K L+KGR+NY+C +L+ + D L + + Sbjct: 74 LNLQDQILNKELPLLKKLFGEKMKYTLIKGRNNYVCKRKLQDLVMKSDDEKYMDLIEAVK 133 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 ++ GD S + W + S D+ + CP YK C+ +R K + Sbjct: 134 ------ASLTGDRSDIKYKISN-DLWNEIKSDKDSTFANKCPYYKSCYFYLSRSKNEHCN 186 Query: 193 VVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAK 252 + +VNHH+ L D ++K++ LIP+ D+++ DEAH L ++ +Y+ S S +++ + Sbjct: 187 IFIVNHHILLLDHIIKQNNNVGLIPKYDLIVIDEAHNLENVVRKYYSLSFSFKEVFKIIG 246 Query: 253 DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLR---------------- 296 + ++++ + K +++++ F + + + N+ Sbjct: 247 MLYSNNVKDIENAGLIGKIIINISENSNHFLIDELKEIFFSNINNIYYALVELRKKIVRK 306 Query: 297 ---------------ELLANPQIQRAF---LLLDDTLELCYDVAKLSLGRSA-----LLD 333 +L N +++ F L+L + + + L Sbjct: 307 YTDLNQNGILTKDICDLNVNDLLEKIFSSNLILKKEVYRLINFLEERDELDKDNLRLFLS 366 Query: 334 AAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF--TLALTPLSVADKFKELMAQKPGS 391 +++ + L+ + E+N Y YW + + TP S++ +F E +K Sbjct: 367 SSYNNLEEHLNTLQEIFELNYEKYIYWMNLDIDNVFPIINATPYSISKEFGENFIEKIRK 426 Query: 392 WIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQ 451 I SATL+V + + + LGI + +PS FDY + + NLP N+ + Sbjct: 427 VILISATLTVGNSFRYIKNSLGIIDSVEENIPSEFDYLNNMNIYLPDNLPLPNEIDFNER 486 Query: 452 LAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA-TMTLPVLLQGETSKGQLLQQFVSA 510 + E NNG+CF+L TS+ ++ +A + +L VL+QGE +L++ F Sbjct: 487 ATKFILDYAEKNNGKCFVLFTSYKDLKFVANYLNKYSSSLNVLIQGEYEIIELIKMFKEK 546 Query: 511 GNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRL-RGGDPFDEVQ 569 N++L+ T SFWEGVDV+G+ LS VII KLPF PDDP++ + F E Q Sbjct: 547 ENSILLGTYSFWEGVDVQGEALSNVIIFKLPFQVPDDPIVSSICYRLNELNSNSAFKEFQ 606 Query: 570 LPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPA 617 LP AV+ +KQGVGRLIR +D+G ++I D R+ + YG L SLP Sbjct: 607 LPYAVLKMKQGVGRLIRSKEDKGNIIILDKRIHKKSYGKIILKSLPKG 654 >UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus RepID=C5D3B0_GEOSW Length = 921 Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats. Identities = 188/693 (27%), Positives = 300/693 (43%), Gaps = 79/693 (11%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----A 59 FA G + ++ R+ Q +M V +A+E Q ++EAGTG GK+ AYL P A Sbjct: 242 FFA--GPHTLPLDHYERRDGQWEMMKLVYEALETSQHALIEAGTGIGKSLAYLIPSAFFA 299 Query: 60 LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG 119 +K+V+IST + LQ QL RD+P + + + + VA+LKG+ NYL L++ L Sbjct: 300 YEQQKRVVISTHTLQLQQQLLERDIPFLKEVVPFPLRVAVLKGKRNYLSLDKFI-AFLQE 358 Query: 120 GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 ++ L W QT GD+ + + WPL+ ++ G Sbjct: 359 HHQNYDVVLLKCQLLVWLTQTETGDMDELNASSGARLFWPLLVMDEEDNGGKYN------ 412 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 F +A+++A +A +V+ NH L D+ L+P+ + MI DEAH L ++AS YFG Sbjct: 413 FFWRAKQRAEEAHIVITNHAFLLHDVTAST----PLLPDYEHMIMDEAHHLEEVASHYFG 468 Query: 240 QSLSSRQLLDLAKDITI--------------AYRTELKDTQ---------QLQKCADRLA 276 Q + + + I A R D +LQ D L Sbjct: 469 QQVDYVSIRLILTRIGKVNENGSLAKLMKLFAGRHWNADDHFFRCGQLVEELQFECDELF 528 Query: 277 QSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAF 336 + + + L+ + R + + + L + + L F Sbjct: 529 RMIRRYALERKSAESGRCRYRFEPQKESGRQWSAMKELLWRIRGHVANLVDETKQLQTFF 588 Query: 337 ER--------------------ATLYRTRLKRLKEINQPGYSYWYECTSRHFT----LAL 372 L L E + P W E + + Sbjct: 589 SENNMESSISAQPYSYFSDVSSLNQIIDTLYDLIESDDPMVVRWIEAEEKGAANATAVYS 648 Query: 373 TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE--SLLLPSPFDYSR 430 P+ + + F E + S + TSATL++N + SR G+ +PSPF Y Sbjct: 649 QPIQLDEFFAERLFMPKKSIVLTSATLTMNGSFAYIISRFGLSDFYPICQTIPSPFSYKE 708 Query: 431 QALLCVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR-- 485 QA+L + + P + A +A + I + G+ +L TS+ +++ A + Sbjct: 709 QAMLMIPSDFPPISSVSLEEYAAVVAEGVAQIAKRIKGKMLVLFTSYELLKLTANAMKME 768 Query: 486 -ATMTLPVLLQG--ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPF 542 ++ QG S +L + F A+L TS+FWEGVD+ GD LS+V+I +LPF Sbjct: 769 ERNEDYVLIAQGVQSGSATKLTKAFQQFDQAILFGTSNFWEGVDLPGDELSVVVIVRLPF 828 Query: 543 TSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 PDDP+++A+ E R +GG+PF E+ LP+AV+ KQG GRLIR D+G + + D RL Sbjct: 829 APPDDPVIEAKSEYIRAKGGNPFYELSLPEAVLRFKQGFGRLIRTKKDKGAIFVFDRRLT 888 Query: 603 MRPYGATFLASLPPAPRTRD-----IARAVRFL 630 YG FL SLP + + + ++L Sbjct: 889 SASYGKYFLNSLPSLTICEESLDQLLQKLEKWL 921 >UniRef50_C7QD23 Helicase c2 n=3 Tax=Actinomycetales RepID=C7QD23_CATAD Length = 706 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 203/697 (29%), Positives = 310/697 (44%), Gaps = 79/697 (11%) Query: 2 TDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR 61 TDD P A G + R Q MA AV +++ L+V+AGTGTGK+ AYL PAL Sbjct: 13 TDDLTPLLDAAVEALGGQTRPGQIAMAKAVAASLDDRVHLLVQAGTGTGKSLAYLVPALA 72 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGN----VALLKGRSNYLCLERLEQQAL 117 K+VI++T + ALQ QL + DLP ++ A+ ALLKGR+NY+CL ++E A Sbjct: 73 HHKRVIVATATLALQRQLVAHDLPRLAAAITPLIKREPAFALLKGRNNYVCLNKVEGGAA 132 Query: 118 AGGDLPV--------QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCL 169 V ++ ++V+ +R W +T GD D +AW V+ + CL Sbjct: 133 EDPGQDVLFDPLAVGKLGAEVLRVREWVEETESGDRDDLSPGVSD-RAWAQVSVSARECL 191 Query: 170 GSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQ 229 GS C ++DCF +A++ A ADVVV NH L + G +++PE D +I DEAH+ Sbjct: 192 GSKCQFFEDCFAEQAKELARSADVVVTNHALL---AIAAMDGDVQVLPEHDAVIVDEAHE 248 Query: 230 LPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEP 289 L + + L+ + +K+ L + E Sbjct: 249 LVNRVTSAATGELTKTAVERAHHRT----DKFVKEATAANLAVATLD------FTEALEN 298 Query: 290 GYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRL 349 G + L ++ A + L D + G +D A ++A + ++ Sbjct: 299 TPEGRFQRGL-PEELGMALVALRDASRSALTELSKNKGGDLDMDGARKQARAATEAVHQV 357 Query: 350 KEINQPG---YSYWYECTS----RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVN 402 E G W E + ++ TL + PL + + + M + + TSATL + Sbjct: 358 AERVLEGAEQDVVWLERSEFKGIKNSTLKIAPLGIENLLRYKMFART-PVVLTSATLKLG 416 Query: 403 DDLHHFTSRLGIEQ--------------------------------------------AE 418 D +G+ Sbjct: 417 GDFTGVAGSVGLHGTERVELDFKPELPEEIYDAAVKLLREGDSDGEEFLDTVQNLPQYWR 476 Query: 419 SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 +L + SPFDY +Q +L V R+L + G ML +++ GR L +S + Sbjct: 477 ALDVGSPFDYPKQGILYVARHLDPPGRDGIRDDQLDMLADLMDNAGGRTLGLFSSMRAAQ 536 Query: 479 DLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIID 538 AE+ R + LP+L QGE S +LL++F L T S W+GV+V G +L LV+ID Sbjct: 537 TAAEKLRTKIDLPILCQGEDSLAELLRKFAEDPETCLFGTLSLWQGVNVPGASLQLVVID 596 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 ++PF PDDP+ AR E GG+ F V A + L QG GRLIR DD+GV+ + D Sbjct: 597 RIPFPRPDDPVSAARTEAVGRSGGNGFMAVSASHAALLLAQGAGRLIRAIDDKGVVAVLD 656 Query: 599 NRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 +RL +PYG+ AS+P +T D R ++ L + Sbjct: 657 SRLATKPYGSFLRASMPAFWQTDDTERVLKSLRAIDA 693 >UniRef50_D0L9M3 Helicase c2 n=6 Tax=Actinomycetales RepID=D0L9M3_GORB4 Length = 699 Score = 452 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 209/676 (30%), Positives = 293/676 (43%), Gaps = 72/676 (10%) Query: 21 REPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKKVIISTGSKALQ 76 R+ Q MA AV AI+ G+ L V+AGTGTGK+ AYL PA+R + V++ST + ALQ Sbjct: 23 RDGQVTMASAVAHAIDTGEHLAVQAGTGTGKSLAYLVPAIRHAVDSGRTVVVSTATIALQ 82 Query: 77 DQLYSRDLPTVSKA----LKYTGNVALLKGRSNYLCLERLEQQALAGGDLP-------VQ 125 QL RDLP ++ A L A+LKGR NYLCL ++ D + Sbjct: 83 RQLIERDLPRLAGALKGPLGREPTFAILKGRGNYLCLNKIHAGTADEPDTELFDPFELSR 142 Query: 126 ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG-SDCPMYKDCFVVKA 184 +V LR WS+ T GD + +AW V+ T CLG ++C +DCF A Sbjct: 143 TGREVTRLREWSSDTETGDRDDLTPGV-NDRAWRQVSVTARECLGAANCSYGEDCFAEVA 201 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 R+++ DVVV NH L D ++PE DV+I DEAH+L D + +S+ Sbjct: 202 RRRSAKVDVVVTNHALLSIDATSP----ASILPEHDVVIIDEAHELVDRITSVSTAEVSA 257 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQ-KCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQ 303 + LA+ E D + + L A R + P ++ L + Sbjct: 258 ATIALLARRCGKLVDEETVDALEAAGEQFGELLADA-PHRQWMSLPASAASVLVALRDRL 316 Query: 304 IQ--RAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 Q + + + A LD + E + + Sbjct: 317 WQTRTSIGPIRMSGAADESAAAARSAALTSLDELHDTIVRLLGAFDEPDESKRRDVVWVA 376 Query: 362 ECTSR-------HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 E + L + PLSV + + + + I TSATL++ + G+ Sbjct: 377 EERTSRSPSADTRPVLHIAPLSVGGLLRATLFAQ-STVILTSATLAIGGSFDALAATWGL 435 Query: 415 E---------------------------------------QAESLLLPSPFDYSRQALLC 435 + L SPFDY R A+L Sbjct: 436 PASGRGADTPAVDAPAGAGANPVSDVTASGKAVPRDEQRVRWTGLDAGSPFDYPRSAILY 495 Query: 436 VLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQ 495 V R+LP+ + G A + L +I+A GR L +S ++ AE R PVL Q Sbjct: 496 VARHLPRPGRDGIAEKTMTELAELIDAAGGRTLGLFSSMRAAKEAAEAIRERCDHPVLCQ 555 Query: 496 GETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARME 555 GE + L+++F L T S W+GVDV G +LSLV+ID++PF PDDPLL AR Sbjct: 556 GEDTTSSLVRRFTEDPRTCLFGTLSLWQGVDVPGPSLSLVVIDRIPFPRPDDPLLTARQR 615 Query: 556 DCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 RGG+ F V A + L QG GRL+R DDRGV+ + D RL YG +ASLP Sbjct: 616 AVDARGGNGFLSVAANHAALLLAQGAGRLLRSVDDRGVVAVLDPRLATAGYGGYLMASLP 675 Query: 616 PAPRTRDIARAVRFLA 631 P RT D A LA Sbjct: 676 PFWRTTDPATVRSALA 691 >UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus RepID=DING_BACSU Length = 931 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 181/693 (26%), Positives = 302/693 (43%), Gaps = 69/693 (9%) Query: 6 APDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA--- 62 + L++ +PG++ R+ Q M V A + ++EA G GKT YL PA Sbjct: 245 GNEKALSELMPGYEKRDGQMMMMREVADAFANREHALIEAPPGIGKTIGYLIPAALFAKK 304 Query: 63 -KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 KK VIIST S LQ Q+ ++DLP V + A+LKG+S+YLCL + EQ L D Sbjct: 305 SKKPVIISTYSTLLQQQILTKDLPIVQDLFPFPVTAAILKGQSHYLCLYKFEQ-VLHEED 363 Query: 122 LPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 + L W +T GD++ + W + +D+ S F Sbjct: 364 DNYDAVLTKAQLLVWLTETNTGDVAELNLPSGGKLLWDRLAYDDDSYKRSRSEHV-IGFY 422 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS 241 +A++ AM +D+V+ NH L L D + +PE+ I DEAH AS++ G+ Sbjct: 423 ERAKQIAMRSDLVITNHSLLLTDEGSHKKR----LPESGTFIIDEAHHFERAASEHLGKR 478 Query: 242 LSSRQL------------LDLAKDITIAYRTEL----------KDTQQLQKCADRLAQSA 279 + +L L K + ++ + Q +Q +D S Sbjct: 479 ATYIELHTKLSRIGTLKEQGLLKKMRQLFQRNSLPVDSFFELEEWLQHVQAESDAFFSSV 538 Query: 280 QDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELC----YDVAKLSLGRSALLDAA 335 F + L + +++ +L D E + +L +S+L++ Sbjct: 539 HSFVKRRKPKEDLNRLVFKVNKESQDKSWSILTDGAERLCSMLTHLQQLFEAQSSLMEKH 598 Query: 336 FER------------------ATLYRTRLKRLKEINQPGYSYWYECTSRH----FTLALT 373 + Y L++L + + W E ++ + Sbjct: 599 LKGMKSKTVFLADEYQRSMKGLQHYCQTLQKLFFGSDDDEAVWIEIDAKGAKNAVAIYAQ 658 Query: 374 PLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPSPFDYSRQ 431 PL + + + S + TSATL+V RLG+ ++ + SPF Y + Sbjct: 659 PLEPGELLADQFFARKNSVVLTSATLTVEGSFQFMIERLGLSDFFPRTMRIESPFSYDER 718 Query: 432 ALLCVLRNLP---QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 + + + + T QP + A + + + + +L TSH M++ + ++ + M Sbjct: 719 MQVMIPKEMKSIQDTGQPEFIQDTARYIELMAKEKQPKILVLFTSHDMLKKVHQELKHNM 778 Query: 489 ---TLPVLLQG--ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFT 543 + +L QG S G+L++ F ++ A+L+ T+ FWEGVD GD L+ V+I +LPF Sbjct: 779 SASGIQLLAQGITGGSPGKLMKTFKTSNQAILLGTNHFWEGVDFPGDELTTVMIVRLPFR 838 Query: 544 SPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 SPD PL A+ E R +G +PF V LP+AV+T +QG+GRL+R A D+G ++I D R+ Sbjct: 839 SPDHPLHAAKCELARKKGKNPFQTVSLPEAVLTFRQGIGRLLRSAGDKGTIIILDRRIKT 898 Query: 604 RPYGATFLASLPPAPRTRDIA-RAVRFLAIPSS 635 YG FL +LP + ++A Sbjct: 899 AGYGRLFLDALPTTSVSEMTDSELEAYVAGEKE 931 >UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, putative n=19 Tax=Listeria RepID=B8DC27_LISMH Length = 928 Score = 450 bits (1158), Expect = e-125, Method: Composition-based stats. Identities = 183/670 (27%), Positives = 295/670 (44%), Gaps = 65/670 (9%) Query: 21 REPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK----KVIISTGSKALQ 76 R Q +M V QA++ G+ ++EAGTG GK+ Y PA+ K V+IST + LQ Sbjct: 261 RSGQFEMMNLVFQAMKSGKHALIEAGTGIGKSLGYFLPAIYQAKQAELPVVISTYTNLLQ 320 Query: 77 DQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSW 136 QL+ +D+P ++K + +LLKGR +YL L + EQ L D ++ + L W Sbjct: 321 AQLFEKDVPLLTKLTGFKVKASLLKGRDHYLNLFKFEQ-LLQEVDTQYDVVVTKLKLLVW 379 Query: 137 SNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVV 196 +T GDI + W + T P F K+A +AD+V+V Sbjct: 380 LTETTTGDIDEVNLSSGGELFWNRMKHTGWFLSEKHDPWLAHDFYKFNIKQAKNADLVIV 439 Query: 197 NHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITI 256 NH L L D E +P+ + DEAH D A LS R++ + Sbjct: 440 NHALLLNDHFSGR----ETLPKYAFAVIDEAHHFADSARMQGSFVLSYRKIKYFLNQLGS 495 Query: 257 AYR-----------TELKDTQQLQKCADRLAQSAQDFR--LQLGEPGYRGNLRELLANPQ 303 + E L A +L+ + ++F L++ R NL+E++ Sbjct: 496 LEKYSLLTRLAMAFPEADSLYDLDIAAMKLSDAVEEFFGLLKMQLNFARKNLQEVVLVEN 555 Query: 304 --------------------IQRAFLLLDDTLELCY-DVAKLSLGRSALLDAAFERATLY 342 ++ + ++ LE + +L SA L+ + + Sbjct: 556 SEKDAWNDQVYYAAEKVLYLLKESEKNMETLLEQGKREENELGEAESAFLEEMYAFLLDW 615 Query: 343 RTRLKRLKEI---NQPGYSYWYECTSRH----FTLALTPLSVADKFKELMAQKPGSWIFT 395 + +K+L+++ P + + + H L + V + K S I T Sbjct: 616 QNMVKQLEQMLHKKSPILTIYLQADKNHSISSIRLKAVLMEVEPTLGKEFFAKKESVIMT 675 Query: 396 SATLSVNDDLHHFTSRLGIEQAESL--LLPSPFDYSRQALLCVLRNLPQTNQ---PGSAR 450 SATL+V + LG+E+ + + +PSPFDY A + + ++P Sbjct: 676 SATLTVKGKFDYLRKSLGLEEEQIMEKRIPSPFDYKENARVMIPDDMPPIKDTPIERYTS 735 Query: 451 QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP---VLLQG--ETSKGQLLQ 505 +LA +R I NGR +L T+ M++ + +L +L QG S +L + Sbjct: 736 ELAKYIRHIAVKTNGRMLVLFTASDMLQKTYYHMKNEKSLEEYVLLAQGVSAGSAARLTK 795 Query: 506 QFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPF 565 QF A+L+ T+SFWEG+D+ G+ LS ++I +LPF DDP KA++ + RG + F Sbjct: 796 QFQMFDKAILLGTTSFWEGIDIPGEDLSCLVIVRLPFAPMDDPYTKAQISLRKERGENAF 855 Query: 566 DEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD--- 622 LP+AV+ KQG GRLIR DRG++ + DNR+ +G FL S+P AP + Sbjct: 856 QTYSLPEAVLRFKQGFGRLIRRESDRGIVFVFDNRVDTTKFGKAFLESIPSAPILKGKQA 915 Query: 623 --IARAVRFL 630 + F Sbjct: 916 DLLEEVSEFF 925 >UniRef50_C7NJ65 DNA helicase, Rad3 n=28 Tax=Actinomycetales RepID=C7NJ65_KYTSD Length = 765 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 200/646 (30%), Positives = 295/646 (45%), Gaps = 61/646 (9%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKKVIISTGS 72 G PRE Q +M V +A+ + L+V+AGTGTGK+ AYL PA+ K V+++T + Sbjct: 27 GGSPREGQARMTAEVARAVNTSEHLLVQAGTGTGKSLAYLVPAVAHAVATGKPVVVATAT 86 Query: 73 KALQDQLYSRDLPTVSKAL----KYTGNVALLKGRSNYLCLERL--------EQQALAGG 120 ALQ Q+ RDLP V++AL AL+KGR+NYLC +L ++ G Sbjct: 87 LALQAQIVDRDLPRVAEALRSEMGRPITYALVKGRNNYLCQHKLLGGFPDDDADALVSMG 146 Query: 121 DLPVQ---ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG-SDCPMY 176 + + +V+ LR W+ T GD V +AW V+ + C G S CP+ Sbjct: 147 QVDADRSALGEEVVRLREWAQITESGDRDELVPGV-SHRAWRQVSVSARECFGASRCPVA 205 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 +CFV +R+ A D DV+V NH D + ++PE D+++ DEAH+L D + Sbjct: 206 SECFVELSREAAKDVDVIVTNHAFLAIDAIEGR----SMLPEHDLLVVDEAHELVDRVTG 261 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLR 296 L+ + A+ DT +L++ + L+Q+ G LR Sbjct: 262 VATDELTPGTVAIAARKAGK-----FADTDRLEEAEEALSQALDPL--------PEGTLR 308 Query: 297 ELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSAL-----LDAAFERATLYRTRLKRLKE 351 L + A ++L D K G A AA + RL +E Sbjct: 309 SLPD--ALADALVVLRDAARGVSTDLKPEKGEKADGPQQTARAAVDEVGDVAQRLLEERE 366 Query: 352 INQPGYSYWYECTSRHF----TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHH 407 ++ W R L + P+SVA +E + + + + TSATL + Sbjct: 367 LD----VVWVAPDGRSNQRRNVLRVAPMSVAMLLREKVFTE-RTVVMTSATLELGGSFDA 421 Query: 408 FTSRLGI-----EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEA 462 LG+ + + SPFDY +QA+ V +LP + G+A + + +I A Sbjct: 422 LAGTLGLLGAGAPSWNGVDVGSPFDYPKQAMAYVAGHLPAPGRDGTAPEQVDEIEALIRA 481 Query: 463 NNGRCFMLCTSHAMMRDLAEQFRATMT--LPVLLQGETSKGQLLQQFVSAGNALLVATSS 520 GR L +S R A++ R + VL QGE L+++F + L T S Sbjct: 482 AGGRTLGLFSSMRAARAAADEMRERLGDEFEVLCQGEDQLPTLVRRFAADARTCLFGTLS 541 Query: 521 FWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQG 580 W+GVDV G LV+ID++PF PDDPL AR + GG+ F V A + L QG Sbjct: 542 LWQGVDVPGSACQLVLIDRIPFPRPDDPLSSARSQAIARNGGNGFMAVSATHAALRLAQG 601 Query: 581 VGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARA 626 GRL+R ADDRGV+ D R+V Y SLPP T+D A Sbjct: 602 SGRLVRRADDRGVVAFLDPRMVTARYAGFLQKSLPPFWPTQDRALV 647 >UniRef50_P29741 Probable ATP-dependent helicase dinG homolog n=50 Tax=Gammaproteobacteria RepID=DING_PHOPR Length = 692 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 185/678 (27%), Positives = 296/678 (43%), Gaps = 74/678 (10%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAI-----EKGQPLVVEAGTGTGKTYAYLA----PALR 61 L + F PR Q + + + + +K + LV EAGTG GK+ AYL AL Sbjct: 17 LGNQLDNFIPRRAQNYLVAEIAKTLAGEYHQKHRMLVGEAGTGIGKSLAYLLGGIPFALF 76 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 KK++IST + ALQ+QL ++DLP ++ + L KGR Y C +LE D Sbjct: 77 NNKKLLISTATVALQEQLINKDLPLFNRIYPKEFSFILAKGRQRYCCNHKLEACCATNND 136 Query: 122 LPVQILSDVIL------LRSWSNQT----VDGDISTCVSVAEDSQAWPLVTSTNDNCLGS 171 V + + LR T DGD + + D + WP + + +C + Sbjct: 137 QQVTLWEEKPKKSDLDLLRRMLKATRDGKWDGDRDSWPTTIPD-RVWPQIMADKHSC-HA 194 Query: 172 DCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD--VMIFDEAHQ 229 P ++ C KAR+ ADV++ NH L +AD+ E G G ++PE + + + DEAH Sbjct: 195 GLPQHRSCPFAKAREHLDKADVIIANHALLMADI---ELGGGVILPEPEQTIYVIDEAHH 251 Query: 230 LPDIASQYFGQSLSSRQLLDLAK-------------DITIAYRTELKDTQQLQKCADRLA 276 LP +A + + S + + + A R + + +Q L Sbjct: 252 LPKVARDFSSAASSLKGAATWLEKLNQTIGKLAELAEYKKAARFQDAILENIQHLIPTLR 311 Query: 277 QSAQDFRLQL--GEPGYRGNLRELLANPQ---------IQRAFLLLDDTLELCYDVAKLS 325 Q A + + + + YR EL A + ++A L +L + K + Sbjct: 312 QVANNVDVGMFSKDGIYRFEHGELPAWLEQEAKGCKDASKKALQSLGKIHDLISERLKDN 371 Query: 326 LGRSALLDAAFERATLYRTRLKRLKEINQ----------PGYSYWYECT---SRHFTLAL 372 + L + A + +Y RL+ L+++ + W E + + + Sbjct: 372 EIQQRLGEQALAESGVYLQRLENLEKVWALMAQPKKDKGAPLARWIEKNPDNEGDYIIQV 431 Query: 373 TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI---EQAESLLLPSPFDYS 429 +PL V + +L+ + I SATL + +F ++GI + L L SPFDY Sbjct: 432 SPLEVGYRLDQLLWSRAAGAILVSATLRALNQFTYFCRQVGIYEMDSTRFLALASPFDYQ 491 Query: 430 RQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR---A 486 A L + + L L +E +L +S+ M +A++ R Sbjct: 492 NNARLVIPALSLEPQADKFTDLLIKTLPEYLEGETA-SLVLFSSYWQMNKVADELRPLAK 550 Query: 487 TMTLPVLLQGETSKGQLLQQFVSA----GNALLVATSSFWEGVDVRGDTLSLVIIDKLPF 542 +L+QGE S+ L++ ++L T SF EG+D+ GD L +II K+PF Sbjct: 551 KNKWELLVQGEESRHITLKKHKDNCKSGKPSILFGTGSFSEGLDLPGDLLKNLIITKIPF 610 Query: 543 TSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 P P+ +A E GG+PF ++ +P+A L Q VGRLIR DD G +V+ D R++ Sbjct: 611 GVPTSPVEEAHAEYIESCGGNPFMQISVPEASKKLIQSVGRLIRKEDDMGRVVLLDRRII 670 Query: 603 MRPYGATFLASLPPAPRT 620 R YG L SLPP R Sbjct: 671 NRRYGKALLDSLPPFKRV 688 >UniRef50_C2BW38 ATP-dependent helicase DinG n=3 Tax=Mobiluncus RepID=C2BW38_9ACTO Length = 711 Score = 444 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 186/668 (27%), Positives = 283/668 (42%), Gaps = 57/668 (8%) Query: 12 AKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKV----I 67 A ++ G R Q MA AV + + G L V+AGTGTGK+ YL PAL + Sbjct: 46 AVSLLGGSERPGQAAMAAAVERTLHSGGKLAVQAGTGTGKSLGYLLPALLYCLHEDARVV 105 Query: 68 ISTGSKALQDQLYSRDLPT----VSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP 123 IST + ALQ Q+ ++D P V V +LKG NY+CL +L D Sbjct: 106 ISTATLALQSQIITKDAPLAVEAVQNVTGSALRVEVLKGWQNYVCLHKLNGGYEGSEDDL 165 Query: 124 VQILS------------------------------DVILLRSWSNQTVDGDISTCVSVAE 153 + + L W+ +T GD Sbjct: 166 FSTMEDSPFSGIAGSGETTAGPGARTTRQMQGFAAETKRLYEWARETTTGDRDEAP-RGI 224 Query: 154 DSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFG 213 +++W V+ ++ C+G CP +CF V AR KA A +VV NH + ++ +G Sbjct: 225 TARSWRQVSLSSLECVGEKCPFRSECFQVSARDKAAQAQIVVTNHAMI----GLEAAGKQ 280 Query: 214 ELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCAD 273 +P + +I DEAH+L + S+ L AK A + +++L + A Sbjct: 281 NPLPPCEAIIIDEAHELSERVRSQASTEFSANMLASCAK---AAASLGVSGSEELAQQAI 337 Query: 274 RLAQSAQDFRL-QLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALL 332 L + Q+ + E +LA ++ A L + +A + Sbjct: 338 MLGVALQNLEDSRFTEMPAAVAECRMLALSPLKTALTELSAKAGADTESTGGQRADAAKI 397 Query: 333 DAAFERATLYRTRLKRLK--EINQPGYSYWYECTSRH---FTLALTPLSVADKFKELMAQ 387 A T L+ + + W L PL VA K + Sbjct: 398 AVAKAALTSLLDTLETMTPESVANGETILWLTRGRDGDQEPRLYTAPLDVAGKLANRLWN 457 Query: 388 KPGSWIFTSATLSVNDDLHHFTSRLGI----EQAESLLLPSPFDYSRQALLCVLRNLPQT 443 + + I TSATL + ++G+ + E+L + SPF + RQ +L + R+LP Sbjct: 458 E-HAIIATSATLKLGGTFAPLMHKMGLQLDTPKPETLDVGSPFRHDRQGILYLARDLPAP 516 Query: 444 NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQL 503 + L ++EA+ G L +S M E R LP+++QGE S L Sbjct: 517 TRGEHPDVFWNRLVDLVEASGGGALGLFSSRKMAERAGEVLRERTDLPIMVQGEDSMAAL 576 Query: 504 LQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGD 563 ++ +A L+ T S W+GVD+ G+T LV+ID++PF P DP+++AR + + GG Sbjct: 577 VKDMREDASACLMGTLSLWQGVDLPGNTCRLVLIDRIPFPVPSDPVIEARCDAVKRAGGS 636 Query: 564 PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDI 623 F EV L A + L QG GRL+R A DRGV+ + D+RL YG ASLPP T D Sbjct: 637 DFMEVSLTHAALLLAQGTGRLLRSATDRGVVAVLDSRLATARYGGFLRASLPPLWPTEDS 696 Query: 624 ARAVRFLA 631 + L Sbjct: 697 QVVLDALR 704 >UniRef50_Q0AXW2 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AXW2_SYNWW Length = 681 Score = 444 bits (1141), Expect = e-123, Method: Composition-based stats. Identities = 191/658 (29%), Positives = 305/658 (46%), Gaps = 48/658 (7%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + F G + + +P +K R+ Q + VAV+ A+ + L+ EAGTG GKT+AYL PA+ Sbjct: 9 IKKYFESSGPMEQLLPDYKFRQEQVNLTVAVSAALSDQEFLLAEAGTGVGKTFAYLLPAV 68 Query: 61 RA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 +KV+I+T +KALQ QL RDLP V + +K A KGR N+LC + Sbjct: 69 LWSLQENEKVVIATRTKALQQQLIERDLPDVKRVIKADFTCAEAKGRENFLCWNKYINIL 128 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 L + + W+ Q+ GD + + W ++ + +C C + Sbjct: 129 AGKKRLQEGEFEFLQSVLPWAEQSETGDRKELRLKSALMKHWDILAADRKSCRKDKCLYH 188 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 + CF +K K+ + ++V NH L L+D+ V L+PE +I DEAH L A Sbjct: 189 EKCFRLKMIKRLEKSQIIVTNHALLLSDVQVDNR----LLPEYHYLIIDEAHSLDREAFD 244 Query: 237 YFGQSLSSRQLLDLAKDITIAYRTELK-----DTQQLQKCADRLAQSAQDFRLQLG---- 287 SS +DL + + AY +K D + L +C ++ + + + Sbjct: 245 KLSMRFSSGDSMDLLEYLQKAYLPHIKELSSVDRELLGECLTHISMAVKLLKEYFSALNR 304 Query: 288 ----EPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSL-------------GRSA 330 + GY L A+ + L + + D L L S Sbjct: 305 PLSSKNGYEATLVIKAADLEKTWFLEAL-EIHQDWQDSINLLLKNLKKLEECMGGVEESE 363 Query: 331 LLDAAFERATLYRTRLKRLKE--INQPGYSYWYECTSRHFT-LALTPLSVADKFKELMAQ 387 L ++ E Q W +C ++ +P+ +A + + + Sbjct: 364 ELSRVIISLQEEADHAYQINEEHSFQSDMLVWLDCERGKVKAVSSSPVCIASELQNRLYH 423 Query: 388 KPGSWIFTSATLSVNDDLHHFTSRLGI------EQAESLLLPSPFDYSRQALLCVLRNLP 441 K S + SATL+V + +F ++ G+ E+ ++LL SPFDY +QA +L ++P Sbjct: 424 KLESLVMVSATLAVEERFDYFLNKFGLSQLQEEERLKTLLEKSPFDYKKQAGYILLDDMP 483 Query: 442 QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQGET 498 ++P +LA +L II+ GR +L TS ++D+A R + +L+Q E Sbjct: 484 ARDEPDYQEKLAGILSQIIDITGGRTLILFTSRQQLKDIAGIIRPYCEQRQVKLLVQNED 543 Query: 499 S-KGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDC 557 L +Q+ + ++++ +FWEG+D++GD L ++I KLPF SPD+P +A + Sbjct: 544 GGFETLKEQYTAHPRSVIMGLDTFWEGIDLKGDLLKCLVIIKLPFRSPDEPFCQAWEKYY 603 Query: 558 RLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 + F LPDAVI LKQGVGRLIR +DRG +VI D RL Y FL SLP Sbjct: 604 QQLNQSGFSRFLLPDAVIRLKQGVGRLIRGENDRGAIVILDARLGKSSYSKVFLNSLP 661 >UniRef50_A7BD43 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BD43_9ACTO Length = 646 Score = 443 bits (1140), Expect = e-123, Method: Composition-based stats. Identities = 200/645 (31%), Positives = 288/645 (44%), Gaps = 44/645 (6%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 G PRE Q M A+E Q L+V+AGTGTGK+ YL P L + ++ST + Sbjct: 21 GGSPREGQASMCAEGAAALEDRQHLLVQAGTGTGKSVGYLVPLLTHCAMNGVRGVVSTAT 80 Query: 73 KALQDQLYSRDLPTV----SKALKYTGNVALLKGRSNYLCLERL------EQQALAGGDL 122 ALQ Q+ +D P V + A VA+LKG SNY CL +L E D+ Sbjct: 81 LALQRQILVKDAPVVVDAVASATGARLKVAVLKGWSNYACLHKLDGGYPTEGTLFEDHDM 140 Query: 123 PV----QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 V ++ +++ +R W ++T GD V D +AW + CLG CP+ + Sbjct: 141 SVGPTGELGKEILRIREWISETTTGDRDDLVPGVSD-RAWRHASVAKPECLGKHCPLIDE 199 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYF 238 CF AR +A DADVVV NH LF + G GEL E D ++ DEAH+L D Sbjct: 200 CFAQAARLEAADADVVVTNHSLF----GINACGEGELFGEYDAVVIDEAHELADRVRSQA 255 Query: 239 GQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLREL 298 L+ ++ +A+ + D+ L++ L + L E Sbjct: 256 AADLTVARVSRVARSLRSNLS---IDSTDLEEAGAGLGAAMSPLEEGLLEY--------- 303 Query: 299 LANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYS 358 + A ++LD + G A A L + Sbjct: 304 -RPSALVDAMIVLDGAARRASHEVSEAQGEPAAKLLARAAIDELIGALDAWGRDPDQSIA 362 Query: 359 YWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE--- 415 Y + S + L + PL V+ + I TSATL++ + +++G+ Sbjct: 363 YITKDESDNARLTVGPLDVSAAIGGNGIGE-RPAILTSATLAIGGNFDFMAAQVGMAVSG 421 Query: 416 -QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSH 474 + + SPFD+ RQ + V +LP + G + +L L + +A+ G L S Sbjct: 422 VPWHGIDVGSPFDHGRQGIRYVATHLPLPGRDGPSEELLDELVELAQASGGGMLALFASR 481 Query: 475 AMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSL 534 + R L V LQGE + QL+Q+F ++ LV T S W+GVDV G L Sbjct: 482 RGAMAGGQALRERTDLTVYLQGEETLAQLIQRFREERDSCLVGTMSLWQGVDVAGAACRL 541 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 V+IDK+PF PDDP+ +AR D RGG+ F V L A + + QGVGRL+R DDRGV+ Sbjct: 542 VVIDKIPFPRPDDPVSRARSMDVERRGGNGFVSVSLTHAALMMAQGVGRLLRSTDDRGVV 601 Query: 595 VICDNRLVMRPYGATFLASLPPAPRTRDIARAV---RFLAIPSSR 636 I D R+V + YG + SLP T D R LA S R Sbjct: 602 AILDPRVVTKRYGGFIMRSLPAMWPTTDPEVVRGALRRLAKGSDR 646 >UniRef50_D1SEM0 Helicase c2 n=2 Tax=Micromonospora RepID=D1SEM0_9ACTO Length = 713 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 213/694 (30%), Positives = 294/694 (42%), Gaps = 94/694 (13%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 A+PG R Q+QMA A+ ++I G+ L+V+AGTGTGK+ AYLAPAL V++ST + Sbjct: 33 AVPGGAARPGQQQMAEAIERSIASGEHLLVQAGTGTGKSLAYLAPALTVDGPVVVSTATL 92 Query: 74 ALQDQLYSRDLPTVSKA----LKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV----- 124 ALQ QL DLP ++ A L A+LKGR +YLCL RL+ D + Sbjct: 93 ALQSQLVEHDLPRLADAVEPVLGRRPTFAVLKGRHHYLCLARLDSSVEDEPDDALFDAPH 152 Query: 125 -------------QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG- 170 ++ V LR W+ +T GD +D Q W V+ C+G Sbjct: 153 SGNGGTKWLGEAGRLGKQVQRLRDWAEETATGDRDELDPGVDD-QVWRSVSMPARECVGA 211 Query: 171 SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQL 230 S CP ++CF +R +A +AD+VV NH L DM+ ++P +++ DEAH+L Sbjct: 212 SRCPFGQECFAEASRARAREADIVVTNHSLLAVDMLAGRH----IVPPHRLLVVDEAHEL 267 Query: 231 PDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPG 290 D S L + + R A+RL ++ + L E Sbjct: 268 ADRVSSAAQAELVPELIDRSTRRARPLLRP---------DVAERLTEAGDALAVGLAEAP 318 Query: 291 YRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALL---DAAFERATLYRTRLK 347 G L L P ++ A LLD + A T + Sbjct: 319 A-GRLTAGL-PPALREACTLLDSATRAALEGIGDVKADDPDPVRKQQAKAVLDELSTTAQ 376 Query: 348 RLKEINQPGYSYWYECTSRHFT--LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDL 405 RL E W E L + PLSVA + + + + TSATL++ Sbjct: 377 RLLEEADHD-VAWVEKPDNGSRRALVVAPLSVAGTLATHLYDE-RTVVATSATLALGGRF 434 Query: 406 HHFTSRLGIEQAE----------------------------------------------- 418 LG++ Sbjct: 435 DTVARALGLDAPPPAPPSPAAAAIATAAAAGRSPVTPVAAAEGSRASVGTVPATEGPGWS 494 Query: 419 SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 SL + SPFDY+RQ +L V +LP+ + G L ++EA GR L +S + Sbjct: 495 SLDVGSPFDYARQGILYVAAHLPRPSVSGLPGPAGEELLALVEALGGRTLGLFSSRRAAQ 554 Query: 479 DLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIID 538 AE RA LPVLLQGE + L+++F + L S W+GVDV GD LV+ID Sbjct: 555 QAAELVRARTDLPVLLQGEEALPLLVRRFREVRESCLFGVMSLWQGVDVPGDACQLVVID 614 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 +LPF PD+PL AR GG F V +P A + L QGVGRLIR DRGV+ + D Sbjct: 615 RLPFPRPDEPLAAARAAAVDAGGGSGFAAVSVPIAAVRLAQGVGRLIRATGDRGVVAVLD 674 Query: 599 NRLVM-RPYGATFLASLPPAPRTRDIARAVRFLA 631 +RL R YG SLPP T A L Sbjct: 675 SRLETARGYGPFLRRSLPPFWYTTRPEVARGALE 708 >UniRef50_B8CRB2 Helicase c2 n=45 Tax=Gammaproteobacteria RepID=B8CRB2_SHEPW Length = 701 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 164/676 (24%), Positives = 285/676 (42%), Gaps = 70/676 (10%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAI-----EKGQPLVVEAGTGTGKTYAYLA----PALR 61 +A ++P F+ R Q + +++ + ++ + +VVEAGTG GK+ AY+ AL Sbjct: 28 IASSLPNFRSRREQNYIVAEISKTLAGEYDKQRRIIVVEAGTGIGKSLAYILGTIPLALA 87 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 +KKKV I+T + ALQ+QL +DLP + L+KGR Y+CL +LE Sbjct: 88 SKKKVCIATATVALQEQLLHKDLPFFLQHSGLDFTFGLVKGRQRYVCLSKLEMLVGPDNS 147 Query: 122 LPVQILSDVI----------LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGS 171 + + LL+ + +G+ T D W + +C Sbjct: 148 SQMAMWQSKPDQSQVDMLEGLLKDFKESRWNGERDTLTKPLPDH-LWQQIACDKHSCHKQ 206 Query: 172 DCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLP 231 C KAR+ DV++ NH L AD+ + G PE + DEAH LP Sbjct: 207 LASHRN-CPFHKAREDIDTWDVLIANHSLLFADLELG-GGVILPDPEDLYYVIDEAHHLP 264 Query: 232 DIASQYFGQSLSSRQLLDLAKDITIA----------------YRTELKDTQQLQKCADRL 275 +A + + R D + +T + L + +++ Sbjct: 265 IVARDFSSAQATIRGASDWLEKLTKTTSKLQNQIKSNYIIAPAQAMLDHIGDISGLLNQV 324 Query: 276 AQSAQDFRLQLGEPGYRGNLR------------------ELLANPQIQRAFLLLDDTLEL 317 A Q P R +A Q + LL++ ++ Sbjct: 325 AHFCDAQAKQFDNPENRFRFEHGKLPPALLILAENLATASNVALKQFNKMLALLNEAIKD 384 Query: 318 CYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQP---GYSYWYEC---TSRHFTLA 371 LS + +R + + + + + P + W E + + Sbjct: 385 GDIPKHLSEALLSETGFMLQRIENLQKLWRMMAKQDNPKGAPMARWIEQLTGKQSDYLFS 444 Query: 372 LTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI---EQAESLLLPSPFDY 428 +P+ V + L+ K + SATL ++ +HFT ++G+ + + L L SPFD+ Sbjct: 445 ASPIEVGFMLENLLWDKAAGVVLCSATLRALNNFNHFTHQVGLSINDGSRYLALDSPFDF 504 Query: 429 SRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 + A L + + + +LA + ++E + +L S+ M +A+ + Sbjct: 505 EQNATLFLPQMDTEPTHDNYTDELAKQIIALVE-DEMASLVLFASYWQMEKVADLVENKI 563 Query: 489 TLPVLLQGETSKGQLLQQFVS----AGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTS 544 +L+QG + ++L++ + +++ T SF EG+D+ GD L+ +II KLPF Sbjct: 564 KTNLLIQGTLPRQEILKRHKALCDDTKPSIIFGTGSFSEGLDLPGDYLTNLIITKLPFAV 623 Query: 545 PDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMR 604 P P+ +A E +++GG+PF ++ +PDA L Q GRL+R D G + I D RLV + Sbjct: 624 PTSPVEQAHSEYIKIKGGNPFLQLTIPDASRKLVQSCGRLLRKEQDYGRISILDRRLVTK 683 Query: 605 PYGATFLASLPPAPRT 620 YG + L +LPP R Sbjct: 684 RYGKSLLDALPPFRRV 699 >UniRef50_B2S179 ATP-dependent helicase, DinG family n=4 Tax=Borrelia RepID=B2S179_BORHD Length = 685 Score = 441 bits (1134), Expect = e-122, Method: Composition-based stats. Identities = 171/647 (26%), Positives = 291/647 (44%), Gaps = 47/647 (7%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIIS 69 I GF R Q +M +++A E LV+EA TGTGK+ AYL A+ + ++KVIIS Sbjct: 14 NIKGFVKRNTQLRMIKKISKAFENENFLVIEAPTGTGKSLAYLIAAIDFIQKTQEKVIIS 73 Query: 70 TGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSD 129 T S LQ+QL +D+ T+ K + + ++KG NYLCL RLE+ Sbjct: 74 TASINLQEQLIKKDIETLEKLIPFKMRFGVIKGMRNYLCLRRLEELEKNLLTYTFNKKHL 133 Query: 130 VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAM 189 L+ W+ T GD + D Q W V+++ + C G CP CF KARKK + Sbjct: 134 EALIY-WTQNTKTGDRDELHFI--DEQIWEEVSASPETCSGITCPDENKCFFKKARKKIL 190 Query: 190 DADVVVVNHHLFLADMVVKESGFGE-----------------LIPEADVMIFDEAHQLPD 232 + D+++ NHHL L D+ +K E ++P +I DEAH L + Sbjct: 191 ECDIIITNHHLLLNDLYIKNEILTEKENYENGSEKNYEEINLILPNVKNIIIDEAHYLEE 250 Query: 233 IASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYR 292 A F ++ S + + I + + + + S ++ + Sbjct: 251 AARTLFSKNFSRIGIKQIFTKIDKIIKKQNINGAYKKNFEIETMLSFENVEYIIKIQKDF 310 Query: 293 GNLRELLANPQIQRAFLLLDDTLE-----------LCYDVAKLSLGRSA--LLDAAFERA 339 ++ + + ++ + L+ + + ++A L+ + Sbjct: 311 PSIYRITNDTHKTDFYIRIKTHLQNIIYNLENYKVSITSIIQNMENKTAKIELERLIKNI 370 Query: 340 TLYRTRLKRLKEINQ-PGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSAT 398 + +K NQ + +W E + + + + ++M ++ IFTSAT Sbjct: 371 EYKESLIKNFISENQYDNFCFWIENKKNIPIFKTSGIYLGPELNKIMYKRVKRIIFTSAT 430 Query: 399 LSVNDDLHHFTSRLGIE----QAESLLLPSPFDYSRQALLCVLRNLPQTNQ-PGSARQLA 453 L +N +F ++ G+ E LP F Y +++L V ++ N+ Q Sbjct: 431 LMINQSFSYFINQTGLNLINQDIEMEKLPYSFPYKEKSILTVTSDIEDPNKAEEFLNQSI 490 Query: 454 AMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA---TMTLPVLLQGETSKGQLLQQFVS- 509 ++ ++ N G +L TS + + + + + + +QGE K +L+ F Sbjct: 491 QYIKELVILNKGGTLILLTSFKSLEYIGKNIKDFLRENNINLFIQGELPKHELINSFKKS 550 Query: 510 AGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQ 569 ++L+ +FWEG+D++GD L++VII KLPF +P DP+L A+ + F + Sbjct: 551 PKKSVLIGMKNFWEGIDIKGDKLTMVIIPKLPFQTPSDPILIAKNALATKSNENFFTQET 610 Query: 570 LPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPP 616 LP A++ KQG GRLIRD+ D G++V D R+ + YG FL SLP Sbjct: 611 LPQAIMKFKQGFGRLIRDSKDYGIIVCFDKRIFEKTYGKLFLQSLPE 657 >UniRef50_P64315 Probable ATP-dependent helicase dinG homolog n=11 Tax=Mycobacterium tuberculosis complex RepID=DING_MYCBO Length = 664 Score = 440 bits (1132), Expect = e-122, Method: Composition-based stats. Identities = 212/650 (32%), Positives = 301/650 (46%), Gaps = 47/650 (7%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----LRAKKK 65 +A A G R Q++MA AV A E G+ LVV+AGTGTGK+ AYL PA L Sbjct: 14 AIAVAALGGTRRRGQQEMAAAVAHAFETGEHLVVQAGTGTGKSLAYLVPAIIRALCDDAP 73 Query: 66 VIISTGSKALQDQLYSRDLPTVSK----ALKYTGNVALLKGRSNYLCLERLEQ---QALA 118 V++ST + ALQ QL RDLP + AL ALLKGR NYLCL ++ + Sbjct: 74 VVVSTATIALQRQLVDRDLPQLVDSLTNALPRRPKFALLKGRRNYLCLNKIHNSVTASDH 133 Query: 119 GGDLPVQIL----------SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC 168 + P + L DV L +W++ TV GD D ++W V+ + C Sbjct: 134 DDERPQEELFDPVAVTALGRDVQRLTAWASTTVSGDRDDLKPGVGD-RSWSQVSVSAREC 192 Query: 169 LG-SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEA 227 LG + CP +CF +AR A ADVVV NH L D V + ++PE +++ DEA Sbjct: 193 LGVARCPFGSECFSERARGAAGLADVVVTNHALLAIDAVAE----SAVLPEHRLLVVDEA 248 Query: 228 HQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLG 287 H+L D + L+S L A+ IT K TQ+LQ + + + D R Sbjct: 249 HELADRVTSVAAAELTSATLGMAARRITRLVDP--KVTQRLQAASATFSSAIHDAR---- 302 Query: 288 EPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRL- 346 PG L + +A + + A A + +R+ Sbjct: 303 -PGRIDCLDDEMATYLSALRDAASAARSAIDTGSDTTTASVRAEAGAVLTEISDTASRIL 361 Query: 347 -KRLKEINQPGYSYWYECTSRHFT----LALTPLSVADKFKELMAQKPGSWIFTSATLSV 401 I W E H + L + PLSVA+ + + + + TSATL++ Sbjct: 362 ASFAPAIPDRSDVVWLEHEDNHESARAVLRVAPLSVAELLATQVFARA-TTVLTSATLTI 420 Query: 402 NDDLHHFTSRLGIE---QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGS--ARQLAAML 456 + G+ L + SPF +++ +L V +LP + GS A QL + Sbjct: 421 GGSFDAMATAWGLTADTPWRGLDVGSPFQHAKSGILYVAAHLPPPGRDGSGSAEQLTE-I 479 Query: 457 RPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLV 516 +I A GR L +S R E R ++ PVL QG+ S L+++F + L Sbjct: 480 AELITAAGGRTLGLFSSMRAARAATEAMRERLSTPVLCQGDDSTSTLVEKFTADAATSLF 539 Query: 517 ATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVIT 576 T S W+GVDV G +LSLV+ID++PF PDDPLL AR RGG+ F V A + Sbjct: 540 GTLSLWQGVDVPGPSLSLVLIDRIPFPRPDDPLLSARQRAVAARGGNGFMTVAASHAALL 599 Query: 577 LKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARA 626 L QG GRL+R DRGV+ + D+R+ YG ASLPP +T + + Sbjct: 600 LAQGSGRLLRRVTDRGVVAVLDSRMATARYGEFLRASLPPFWQTTNATQV 649 >UniRef50_D1YCN3 ATP-dependent helicase DinG n=3 Tax=Propionibacterium acnes RepID=D1YCN3_PROAC Length = 683 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 200/674 (29%), Positives = 300/674 (44%), Gaps = 78/674 (11%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 G + R Q MA AV QA+ L+V+AGTGTGK+ YLAPAL +VI++T + Sbjct: 25 GGQERPGQVAMAKAVDQAMRDKLHLLVQAGTGTGKSLGYLAPALVYCVEKGAQVIVATAT 84 Query: 73 KALQDQLYSRDLPTV----SKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV---- 124 ALQ QL +D+PT+ K L VA+LKGR+N++CL ++ + Sbjct: 85 LALQAQLAYKDIPTILDASEKVLSRRPRVAVLKGRNNHICLHKVRGSSTRTKGQDALVPG 144 Query: 125 -------------------QILSDVILLRSWSNQTVD----GDISTCVSVAEDSQAWPLV 161 + ++V++LR W+ + V+ GD A AW V Sbjct: 145 ADLVVAADDGREVEAAPESTLGAEVVMLREWAEKQVEESGLGDRDDAP--AHTPLAWAQV 202 Query: 162 TSTNDNCLG-SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD 220 + + CLG CP +C AR++A +AD+VV NH + D G ++PE D Sbjct: 203 SVPANECLGVQRCPFGSECLSEAAREQARNADLVVTNHAMLAIDA----LNGGRVLPEHD 258 Query: 221 VMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQ 280 +I DEAH+L + ++ + LS + AK ++ L AD +A + + Sbjct: 259 TVIIDEAHELVNRFTRAASKDLSPAIVTMTAKRAMTWLDDDVGA--DLLNQADSMAHALE 316 Query: 281 DFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFER-- 338 R + Q+ + +L D + + S A Sbjct: 317 AI----------APGRVTTPDAQVIQTCAVLRDLARVAVSQLDRNDEDSREPVDAERVQA 366 Query: 339 ---ATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFT 395 +R+ + + E + ++ + PLSV +E + + + I T Sbjct: 367 QAAMREVFETAERMVGLAAADVVWVSESEKGYRSIHVAPLSVGGLLRENVFAQ-STTILT 425 Query: 396 SATLSVNDDLHHFTSRLGIEQ-----------------AESLLLPSPFDYSRQALLCVLR 438 SATL + + +G+ + + SPFDYS+Q +L V R Sbjct: 426 SATLCIGGNFLAIARDVGLSPRGQIEGDAPEVFETQMGWRGVDVGSPFDYSKQGILYVGR 485 Query: 439 NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT-LPVLLQGE 497 +LP+ + G A ++ L ++ A GR L +S AE R+ M +PVL QGE Sbjct: 486 SLPRPGRDGIAPEVLDDLAELVWAAGGRTLGLFSSQRNAVAAAEHMRSAMPDIPVLCQGE 545 Query: 498 TSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDC 557 L ++F + L T S W+GVD+ GDT LV+ID++PF PDDPL+ AR + Sbjct: 546 GHLADLTRRFAADPRTCLFGTVSLWQGVDIPGDTCRLVVIDRVPFPRPDDPLMAARSKAV 605 Query: 558 RLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPA 617 GG+ F V A + L QG GRLIR ADDRGV+ + D RLV YG AS+PP Sbjct: 606 EDAGGNGFMTVSAGHAALLLAQGAGRLIRRADDRGVVAVLDPRLVTARYGNFLRASMPPF 665 Query: 618 PRTRDIARAVRFLA 631 T D AV L Sbjct: 666 WTTTDREMAVGALR 679 >UniRef50_D1C098 Helicase c2 n=10 Tax=Actinomycetales RepID=D1C098_XYLCX Length = 696 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 203/672 (30%), Positives = 286/672 (42%), Gaps = 79/672 (11%) Query: 24 QRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKKVIISTGSKALQDQL 79 Q MA+ V +AI++G+ L+V+AGTGTGK+ YL PA+R ++VI+ST + ALQ Q+ Sbjct: 40 QHAMALEVVEAIDEGRHLLVQAGTGTGKSLGYLVPAVRHAVVADERVIVSTATLALQRQV 99 Query: 80 YSRDLPTVSKA----LKYTGNVALLKGRSNYLCLERL--------------------EQQ 115 +RDLP V+ A L +ALLKG NYLCL + E Sbjct: 100 ITRDLPLVADAVAPQLPRPPRIALLKGWHNYLCLHKTGGGYPVDDATLFDLPGITPGESA 159 Query: 116 ALAGGDLPVQILSD---------VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 + P + + V L +W+++T GD V D +AW V+ T+ Sbjct: 160 TEHPAEAPGRARREDGAASLADQVRRLHAWAHETDSGDRDELVPGVPD-RAWRQVSVTSL 218 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDE 226 CLG CP+ +CF +AR A +ADVVV NH + + SG ++PE V++ DE Sbjct: 219 ECLGQRCPLLAECFPERARAAAREADVVVTNHAML----GIAVSGSPGVLPEHGVVVVDE 274 Query: 227 AHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQL 286 AH+L D A+ LS + A+ E D AQ Q Sbjct: 275 AHELADRATSAATVDLSLTTIEHAARLARRHAAAETT-------ALDAAAQELGSLIAQA 327 Query: 287 GEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLS-----LGRSALLDAAFERATL 341 + L E ++ A + D L K A Sbjct: 328 PAGSFPLGLPE-----DLRTAVGAVRDALRELLTRTKPDPPQGGAAPDGGAKMAQSAVLQ 382 Query: 342 YRTRLKRLKEINQPGYSYWYECTSRHF---------TLALTPLSVADKFKELMAQKPGSW 392 +R+ + W L PL VA + + + Sbjct: 383 VYEVAERMAAEDSSSDVLWCSRPGDGPGAGWGDGVSRLHAAPLHVAGLIRAGLLAETTG- 441 Query: 393 IFTSATLSVNDDLHHFTSRLGI-------EQAESLLLPSPFDYSRQALLCVLRNLPQTNQ 445 IFTSATL++ LG+ + + + SPFDY RQ +L V R+LP + Sbjct: 442 IFTSATLALGGQFDAVAGSLGLGRTDDDGGRWRGVDVGSPFDYPRQGILYVARHLPAPGR 501 Query: 446 PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQ 505 + + +IEA GR L +S +AE R + +PVL QG+ L++ Sbjct: 502 DPATDAQLDEIAGLIEAAGGRTLGLFSSRRAANAVAEAMRERLDVPVLAQGDDQLPTLVR 561 Query: 506 QFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPF 565 QF L T S W+GVDV G LVIID++PF PDDP+ AR GG+ F Sbjct: 562 QFAQDPATCLFGTISLWQGVDVPGPACQLVIIDRIPFPRPDDPVKAARARAVEKAGGNGF 621 Query: 566 DEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD--- 622 V A + L QG GRLIR +DRGV+ + D RL YG S+P T D Sbjct: 622 MAVSATHAALLLAQGAGRLIRATEDRGVVAVLDPRLATARYGTFLTRSMPNFWPTTDGRI 681 Query: 623 IARAVRFLAIPS 634 + A+R LA P Sbjct: 682 VREALRRLATPE 693 >UniRef50_B4RPD7 DinG n=35 Tax=Proteobacteria RepID=B4RPD7_NEIG2 Length = 744 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 186/701 (26%), Positives = 273/701 (38%), Gaps = 93/701 (13%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEK---------------GQPLVVEAGTGTGKTYAY 55 + K +PGF+PR QR+M AV A + V+E TG GK+ AY Sbjct: 45 IGKNLPGFRPRASQREMIAAVANAFSRTLTREEGGEPPKREGESIAVIEGPTGVGKSLAY 104 Query: 56 LAP----ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLER 111 L A K++I+S+ + ALQ+QL RDLP + + AL KGR YLC + Sbjct: 105 LLAGGIMAQTRGKRLIVSSATVALQEQLVDRDLPFLVEKSGLELTFALAKGRGRYLCPYK 164 Query: 112 LEQQALAGGD-----------------LPVQILSDVILLRSWSNQTVDGDISTCVSVAED 154 L Q + P ++ + +S + +GD +D Sbjct: 165 LYQLTQSNAQQNLLGFEAPAVLWDSKPKPEELKLLRDIADEFSARRFNGDRDAWPEKIDD 224 Query: 155 SQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGE 214 + W VT+ CL + CP +C AR DVVV NH L LAD+ + G Sbjct: 225 A-IWLKVTNDRHGCLKAACPNRPECPFYLARDMLETVDVVVANHDLLLADISMG-GGVIL 282 Query: 215 LIPEADVMIFDEAHQLPDIASQYFGQSLSSR-QLLDLAKDITIAYR-TELKDTQQLQKCA 272 PE DEAH LP A F S + L K + + L D +L A Sbjct: 283 PAPENSFYCIDEAHHLPKKALSRFAAEHSWNIAVWTLEKLPQLTGKIAALTDKAELANLA 342 Query: 273 DR----LAQSAQDFRLQLGEP-----GYRGNLRELLANPQIQRAFLLLDDTLE------- 316 D L S +++ L E G N R + P + + LE Sbjct: 343 DEAAASLLDSLHEWQFHLAEEPSLSMGLSENDRRTNSEPTWLWEDGKIPEGLETTVSNTA 402 Query: 317 -LCYDVAKLSLGRSALLDA------------------------AFERATLYRTRLKRLKE 351 + K +G + L A E+ + L + Sbjct: 403 IAARSLLKHVVGLNDALSATRREKEQDGALIDRLTGEFGLFIARIEQISAVWDLLSTVSI 462 Query: 352 INQPGYSYWYEC---TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHF 408 + + W + +P+S A + ++ + TSATL + Sbjct: 463 EGEEPLAKWIARRADDKNDYIFNASPISSASHLANSLWRRAAGAVLTSATLQSLGSFNLI 522 Query: 409 TSRLGI---EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPG-SARQLAAMLRPIIEANN 464 + G+ + +L L SPFD+ +Q L + P + L +I Sbjct: 523 LRQTGLLWLPETTTLALKSPFDFEKQGELYIPSIYASPKDPEAHTAAVIEWLPKLISPTE 582 Query: 465 G-RCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQF----VSAGNALLVATS 519 +L +S M+D+A +L+QGE K LLQ+ +++ Sbjct: 583 AIGTLVLFSSRKQMQDVALHLPGDYLPLLLVQGELPKAVLLQKHHQAIEEGKASIIFGLD 642 Query: 520 SFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQ 579 SF EG+D+ G VII KLPF PD+P+ K + RGG+PF E+ +P+A I L Q Sbjct: 643 SFAEGLDLPGTACVQVIIAKLPFAMPDNPIEKTQNRWIEQRGGNPFIEITVPEAGIKLIQ 702 Query: 580 GVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 VGRLIR D G + I DNR+ + YG LA LPP R Sbjct: 703 AVGRLIRTEQDYGRVTILDNRIKTQRYGQQLLAGLPPFKRI 743 >UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=1 Tax=Carnobacterium sp. AT7 RepID=A8UAR2_9LACT Length = 939 Score = 434 bits (1115), Expect = e-120, Method: Composition-based stats. Identities = 164/687 (23%), Positives = 289/687 (42%), Gaps = 73/687 (10%) Query: 18 FKPREPQRQMAVAVTQAI--EKGQPLVVEAGTGTGKTYAYLAPALRAK---KKVIISTGS 72 R Q +M AV ++ +EA TG GKT YL P V+IST + Sbjct: 256 LTTRNQQIKMMDAVYDYFTSDETSHFAIEAATGVGKTLGYLLPLAYIASVENPVVISTYT 315 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 LQ QL +D+ ++ L +T A+LK +++Y+ L + E+ D V+++ + Sbjct: 316 TLLQKQLLDKDIVQLNTILPFTVQAAILKSKNHYIHLTKFEEVLKEPVDQKVEVIYQ-MK 374 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 L +W +T GD+ + W V + Y + F V A+ K A Sbjct: 375 LLTWLTETETGDLDELNLTNYNHLFWNKVRHRGWLTRPEEDRWYDEDFYVHAQHKIKHAS 434 Query: 193 VVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAK 252 V++ NH D+ KE + +P +I DEA LPD+A + + ++ + K Sbjct: 435 VIITNHSFLCHDLNRKE----KELPSIGKLIVDEAQHLPDVAMEASSEIFGYYRMQQIIK 490 Query: 253 DITIA--YRTELKDTQQLQKCA-------------------DRLAQSAQDFRLQLGEPGY 291 I A ++ L QL + D L+ L Sbjct: 491 LIGRASEEKSFLGRITQLSQQLTKIEVSYIENMEMNIFSLEDELSDFINQLLLYCKNTAG 550 Query: 292 --------------RGNLRELLANPQIQRAFLLLDDTL--------ELCYDVAKLSLGRS 329 R L ++ L+++ + + +L+ Sbjct: 551 NKHSQQEQMDIQFNRETHWNLALKKASKKVLTLMNEISYLGYEVVNQGLNEQHQLTQKER 610 Query: 330 ALLDAAFERATLY---RTRLKRLKEINQPGYSYWYECT----SRHFTLALTPLSVADKFK 382 L + F+ + + + + + N+ W+ FT+ + + + K Sbjct: 611 YLFEDFFDVISTFESQKDIFYAVFQENEENEVTWFSYKEKSPKNSFTIKRSKVDSSKFIK 670 Query: 383 ELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQ 442 E + K ++T ATL +N ++F ++LG E + L++ SP+DY +QA L V + L Sbjct: 671 EKLVDKTPYILYTGATLEINQSFNYFETQLGEENLKELIIESPYDYKKQARLWVPKELKP 730 Query: 443 T---NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT---MTLPVLLQG 496 ++ + + IIE + +L S+ M++++ + +L QG Sbjct: 731 IKGLSKKEYVHMVVEQVGNIIENSVENTMVLFNSYEMLQEVYFSLQQNPVASGRELLAQG 790 Query: 497 -ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARME 555 S+ ++L++F + +L+ SFWEGVD+ G +LS+++I +LPF SPD P +KA+ Sbjct: 791 FSGSRDRMLKRFFRSTGGILLGADSFWEGVDLPGKSLSIIVITRLPFESPDRPFVKAKHR 850 Query: 556 DCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 + +PF LP A + LKQG+GRLIR D+GV+++ DNRL+ YG ++SLP Sbjct: 851 YLEQKHLNPFTIDSLPKATLRLKQGLGRLIRSEKDKGVMIVLDNRLIQTSYGKQIVSSLP 910 Query: 616 PAPRTRDI------ARAVRFLAIPSSR 636 ++ + FL + Sbjct: 911 KGLPIEEVATKNMGEKLRHFLNTEENE 937 >UniRef50_C1MEF3 DNA helicase n=1 Tax=Citrobacter sp. 30_2 RepID=C1MEF3_9ENTR Length = 690 Score = 431 bits (1107), Expect = e-119, Method: Composition-based stats. Identities = 168/668 (25%), Positives = 276/668 (41%), Gaps = 69/668 (10%) Query: 16 PGFKPREPQRQMAV---AVTQAI---EKGQPLVVEAGTGTGKTYAYLAP----ALRAKKK 65 G PR Q M V A E+ + V+EAGTGTGKT Y P A+ K Sbjct: 25 KGLSPRAGQVDMMAFCSEVVNATPSEEQYRVGVIEAGTGTGKTLGYCLPLIPLAMEKHKT 84 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ 125 +IIST + ALQ+Q+ S+DLP + + + A+ KGRS Y C R + + + Sbjct: 85 LIISTATVALQEQIISKDLPEIQARAGLSFSYAMAKGRSRYFCQMRCDVHMESEMNAYGY 144 Query: 126 ILSDVILL-RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 I DV + ++++ G+ + ++ W V + C CP Y C A Sbjct: 145 IRDDVEDISKAFAGGHWTGERDSYPDEISEA-VWGRVNAIGSQCPKKRCPHYHRCPFFLA 203 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIP--EADVMIFDEAHQLPDIASQYFGQSL 242 R DVV+ NH + L+D+ + G G ++P E + +FDE H +P A +F S Sbjct: 204 RALLDSVDVVIANHDIVLSDLSL---GGGIILPPQEESIYVFDEGHHVPQKAINHFATSA 260 Query: 243 SSRQLLDLAKDITIAYRTELKDTQ-QLQKCADRLAQSAQDFRLQLGE------------- 288 S +I T + +++ +L + A +LG+ Sbjct: 261 SLDASRHFMAEIFDMVMTMPESYGGTMEQHVQQLVEFAGHAGNELGDLRGTLLRSLNWRS 320 Query: 289 -----PGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYR 343 G ++ + L L+ ++ + + +A++D A + Sbjct: 321 DHDMPNGVESDIYRFPEGFVPEAIAALFSPALKTVNEMQNIVVKMTAIVDEAGRDISEDD 380 Query: 344 TRLKRLK----------------------EINQPGYSYWY----ECTSRHFTLALTPLSV 377 L+++ ++ + W S + +P+ Sbjct: 381 LALQKMAVGELANRLAGMHQALASYCGNKTVSGMPMARWINVRRTKRSTEVVINCSPVYA 440 Query: 378 ADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCV 436 + K + K + I TSAT+ F + G+ +LL SPFDY +L + Sbjct: 441 GEHLKSELWSKAYATIVTSATIRSLSKFDAFLEQAGLPVDTPTLLARSPFDYQNNGVLFI 500 Query: 437 LRNLPQT-NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQ 495 R N ++ +L ++ G C +L S M ++++ ++ +L+Q Sbjct: 501 PRMRSVPTNHEEHTAEIIELLPKLVLRLQG-CLVLFASRRQMEEVSKAMPQHISPLLLIQ 559 Query: 496 GETSKGQLLQQFV----SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLK 551 G K ++L + +++ +SF EGVD+ G + VII KLPF+ P DP+ + Sbjct: 560 GALPKREILLRHKLRIDRGEPSIIFGMASFSEGVDLPGVYCNNVIIAKLPFSVPTDPVGQ 619 Query: 552 ARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFL 611 E G D F E+ +P+A + L Q VGRLIR D G + I D RL + YG L Sbjct: 620 TLTEWLEKNGRDAFREISIPEACLKLTQSVGRLIRTESDTGAVTILDKRLKTKAYGKDIL 679 Query: 612 ASLPPAPR 619 ASLPP R Sbjct: 680 ASLPPFRR 687 >UniRef50_A4A9L6 ATP-dependent helicase, DinG n=4 Tax=unclassified Gammaproteobacteria RepID=A4A9L6_9GAMM Length = 707 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 184/688 (26%), Positives = 285/688 (41%), Gaps = 92/688 (13%) Query: 17 GFKPREPQRQMAVAVTQAI------------EKGQPLVVEAGTGTGKTYAYLAPALRA-- 62 G PR QRQM V + E V+EAGTGTGKT AY+ PAL Sbjct: 24 GLTPRWGQRQMIAEVANTLARLSPSMGAADTEGSPIAVIEAGTGTGKTIAYVIPALVMAR 83 Query: 63 --KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 K+++I+T + ALQ+QL +DLP + K + L KGR YLCL +L++ Sbjct: 84 ALNKRLVIATATVALQEQLVHKDLPDIKKGSGLDFSFQLAKGRRRYLCLSQLDRLMARES 143 Query: 121 D-------LPVQILSDVIL---------LRSWSNQTVDGDISTCVSVAEDSQAWPLVTST 164 P ++ + L + + DGD + D+ +P VT+ Sbjct: 144 GGGQTMGLYPDEVSPALARDALESYGLMLDALARGDWDGDRDNWSAPINDADWFP-VTAD 202 Query: 165 NDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADVM 222 C G CP ++C +AR +ADVVV NH L L+D+ + G G ++ PE + Sbjct: 203 QGQCTGRRCPNIRNCSFYRARDGLQEADVVVTNHDLVLSDLAL---GGGAILTPPEDTIY 259 Query: 223 IFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAY-----------------RTELKDT 265 IFDE H LPD A +F L D A Sbjct: 260 IFDEGHHLPDKALNHFASFCRLPSTLSWLGDSRKALAKGAPLLATLPGLSTVLEPLPALF 319 Query: 266 QQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA--------------FLLL 311 LQ ++A+ A G+ + + P +Q+A + L Sbjct: 320 DDLQLRLQQIAEKAAAIMASAGDFEEQLRFEGGVVPPDLQQATASLASQWARLTGRLITL 379 Query: 312 DDTLELCYDVAKLSLGRSAL----------LDAAFERATLYRTRLKRLKEINQPGYSYWY 361 + ++ + + R L L A +L++ E P + W Sbjct: 380 EAGIDDALEDESFASVRDELEAWQMAVGGMLVRAEGVLSLFQDFAADAAE-ESPPRARWL 438 Query: 362 ECTSRH----FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA 417 + + L + + AD +E + + I TSAT++ F +R G+ + Sbjct: 439 KRRADDEELAIDLHCSHILAADILREQLWDRAAGVILTSATMTALGSFDRFRARSGVPED 498 Query: 418 -ESLLLPSPFDYSRQALLCVLRNLPQTNQ-PGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 ++ SPFDY + A L V + P R+L +L +++A G +L +S Sbjct: 499 GRYKIVASPFDYGK-ATLHVPAMKSEPGDAPAHTRELIELLPDLLDAGEG-SLVLFSSRR 556 Query: 476 MMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSA----GNALLVATSSFWEGVDVRGDT 531 M D+ + +L Q + SK ++L++ A++ +SF EGVD+ G Sbjct: 557 QMNDVYDGLPVEWRSRILRQDDYSKQEILRRHRETIDDGRGAVIFGLASFAEGVDLPGGY 616 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 V+I KLPF PD+P+ A E +G + F E+ +PDA + L Q GRL+R D Sbjct: 617 CQHVVIAKLPFAVPDNPVDAALAEWLEAQGRNAFMEISVPDAALKLVQASGRLLRTETDV 676 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAPR 619 G + + D R++ R YG L SLPP R Sbjct: 677 GRVTLMDRRVITRRYGRAILDSLPPFQR 704 >UniRef50_Q1MXU1 ATP-dependent helicase DinG n=1 Tax=Bermanella marisrubri RepID=Q1MXU1_9GAMM Length = 707 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 185/685 (27%), Positives = 286/685 (41%), Gaps = 88/685 (12%) Query: 18 FKPREPQRQMAVAVTQAI------------EKGQPLVVEAGTGTGKTYAYLAPALRA--- 62 KPR Q+QM A+ + + Q VVEAGTGTGKT AYL + Sbjct: 23 LKPRYGQKQMIAAIAKTLGGIQSDDEGKRVNDKQVCVVEAGTGTGKTLAYLLSTIPLAED 82 Query: 63 -KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG-- 119 KK+I+ST + ALQ+QL S+DLP V+K AL KGR YLC+ +L+Q+ Sbjct: 83 LNKKIIVSTATVALQEQLISKDLPDVAKYSGLEFRYALAKGRGRYLCVHKLDQELKDQRM 142 Query: 120 -----------GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC 168 Q L + DGD E + W +VT+T+ C Sbjct: 143 QDASMDMFGGADATDDQKGLFQKFLDEFLTGRWDGDRDNWPETIE-YEDWSMVTATHREC 201 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEA--DVMIFDE 226 CP + C ARK DA+V+V NH L +AD+ + G G ++PE + +FDE Sbjct: 202 SNRRCPHFNACPFFTARKSLEDAEVIVANHDLVMADISL---GGGAILPEPAQSIYVFDE 258 Query: 227 AHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKD--------------TQQLQKCA 272 H LPD A +F + Q +L K I+ A T K +++ + Sbjct: 259 GHHLPDKAISHFAGQVKLNQEENLLKQISKAVDTLGKQCGTPMGLLQIVTQFPEKIGEIH 318 Query: 273 DRLAQSAQDFRLQLGE-------PGYRGNLRELLAN-----PQIQRAFLLLDDTLELCYD 320 +L + LG+ +R + + ++ + L ++ + Sbjct: 319 SQLGFARHIILDYLGDQAEVEGISTHRFRMGVVPDALIELAGELNKTHNSLYQYIDKIVE 378 Query: 321 VAKLSLGRSA-------------LLDAAFERATLYRTRLKRLKEINQPGYS---YWYEC- 363 K SL + ++ R + + + W + Sbjct: 379 ALKASLNKDDGEYRQADAERWFPIMGMLLARLEMAGLLWLSFAQQDHEDNVPTARWLQRL 438 Query: 364 ---TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL 420 L +P+ A+ + + + + TSATL+ + GI + Sbjct: 439 ITEYEDDIALYSSPILAAELLAKNLWSRCYGAVVTSATLTALGRFDRLRMKAGIAKDNYF 498 Query: 421 -LLPSPFDYSRQALLCVLRNLPQTNQ-PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 + SPFDY + V + + +Q++ +L ++ N +L TS +M Sbjct: 499 ERIQSPFDYPNLGEILVPNDAVEPGHGDDYTQQVSDLLESHLDENE-STLVLFTSRRLMN 557 Query: 479 DLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNA----LLVATSSFWEGVDVRGDTLSL 534 D+ Q ++ V+ Q E SK ++L+Q A L +SF EG+D+ GD L Sbjct: 558 DVKFQLPFDVSDHVITQDEFSKQEVLKQHRDKIEAGLPSYLFGLASFAEGIDLPGDLLQH 617 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 VII +LPF+ PDDP+ E +G +PF E+ +PDA + L Q VGRLIR D G + Sbjct: 618 VIIVRLPFSVPDDPVDATLAEWLESKGRNPFMEISVPDASVRLIQAVGRLIRTEQDTGRI 677 Query: 595 VICDNRLVMRPYGATFLASLPPAPR 619 + D RLV + YG+ L LPP R Sbjct: 678 TVLDKRLVSKRYGSLLLDGLPPFRR 702 >UniRef50_C8W8J2 DNA polymerase III, epsilon subunit n=2 Tax=Atopobium RepID=C8W8J2_ATOPD Length = 978 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 191/711 (26%), Positives = 301/711 (42%), Gaps = 85/711 (11%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + FA G +++ F+ R Q M+V V A+ +EAGTG GK+ AYL P Sbjct: 277 IHRAFAKPGVVSQMYDKFETRSEQVSMSVEVRNALVTSSHRELEAGTGIGKSIAYLLPEA 336 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 A + V I+T + AL DQL + DLP +++AL + LKG +Y CL R+++ A Sbjct: 337 LFAQKNDVTVGIATKTNALTDQLVTHDLPALARALPNGLSFCSLKGYEHYPCLHRVDRAA 396 Query: 117 LAG-------------GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTS 163 L + +L+ + ++ +++ Q+ DGD+ + S +VT Sbjct: 397 LEELPLTLIDQEGRSSNSVASDMLTAIAVIYAYACQSADGDLDAL-GIRWRSVPREMVTI 455 Query: 164 TNDNCLGSDCPMY-KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVM 222 CL S CP Y +CFV ARK+A +DVVV NH L L ++ G+++P Sbjct: 456 KAAECLRSKCPYYPHECFVHGARKRAGSSDVVVTNHSLLLRNVAAD----GKILPPIRHW 511 Query: 223 IFDEAHQLPDIASQYFGQSLSSRQLLD-------------------------------LA 251 + DEAH A + +S++++ + L Sbjct: 512 VIDEAHGFEAEARHQWAIEISAKEMRNGFELLGGIKSGAIHAAMVGAANLEDSTLLTGLL 571 Query: 252 KDITIAYRTELKDTQQLQKCADRLA------QSAQDFRLQLGEPGYRGNLRELLANPQIQ 305 A + + L LA +L + + + Sbjct: 572 TRSAAAVQRAMAAMGNLMVAVHELAPLAKSDGGYNSLQLWINDEVRETKEWKEFLETASV 631 Query: 306 RAFLLLDDTLELCYDVAKLSLGRSALLDAAFER---ATLYRTRLKRLKEINQPGYSYW-- 360 L + L + L+ L E + LK + + Y Y Sbjct: 632 ALSALEEAALRIGKTTEALTASAPNLASNLSESGMFLSTLLESLKLICDGTDKSYVYSAK 691 Query: 361 ---YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-- 415 + L L + + E + S +FTSAT++V DD HF +G++ Sbjct: 692 LTRLKRDIGSEALVAEKLDIGAELAEKWLPETHSVVFTSATIAVGDDFSHFEHAVGLDRG 751 Query: 416 --QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTS 473 + +SL L S FDY + V ++P PG L +L + G L T+ Sbjct: 752 SFEHKSLHLDSSFDYENHMGVFVAEDMPTPTDPGYLDALEKLLFDVHVQMGGSVLTLFTN 811 Query: 474 HAMMRDLAEQFRATM---TLPVLLQGETSKGQ-LLQQFVSAGNALLVATSSFWEGVDVRG 529 M L E + L + Q +S + + ++F++ N L A SFWEG D G Sbjct: 812 RRDMERLYEALEPRLSEYGLTLACQERSSSARRIREKFLAEKNLSLFALKSFWEGFDAAG 871 Query: 530 DTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDAD 589 DTL V+I KLPF SP++PL+K R +R + LP+AVI KQ GRLIR A+ Sbjct: 872 DTLRCVVIPKLPFASPNEPLVKER----EVREDRAWWRYSLPEAVIATKQAAGRLIRSAE 927 Query: 590 DRGVLVICDNRLVMRPYGATFLASLPP----APRTRDIA-RAVRFLAIPSS 635 D+GVLV+ D+RLV + YG++FL SLP T++I+ + ++ + Sbjct: 928 DKGVLVLADSRLVSKRYGSSFLKSLPNKNYQCVSTKNISGQIAKWREEHDA 978 >UniRef50_A3EQ06 Probable ATP-dependent DNA helicase n=2 Tax=Leptospirillum sp. Group II RepID=A3EQ06_9BACT Length = 738 Score = 427 bits (1097), Expect = e-118, Method: Composition-based stats. Identities = 189/701 (26%), Positives = 289/701 (41%), Gaps = 92/701 (13%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAI----------EKGQPL-VVEAGTGTGKTYAYLAP 58 +L++ +PGF R QR M V + + GQ L V++ TGTGKT AYL Sbjct: 32 RLSRTLPGFAARPGQRAMIAEVARTFSRCREEGEPSKDGQNLSVIQGPTGTGKTMAYLLA 91 Query: 59 ----ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL-- 112 A KK +++ST + +LQ+QL ++D+P +++ L L KGR YLC L Sbjct: 92 GIVLARSRKKTLLVSTATVSLQEQLVTKDIPQLARVLDNPPVYELAKGRGRYLCERNLLS 151 Query: 113 -----EQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDN 167 A L + LR + DGD DS W L+ + + Sbjct: 152 LTDLQAGNAFWKHPPSASELDLLDRLRGDFPDSWDGDRDHLPVSVPDS-LWSLIQNQGTS 210 Query: 168 CLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEA 227 C G CP+Y C ++ AD+VV NH L L+D+V+ G PE +++FDEA Sbjct: 211 CTGKRCPLYSRCPFFLKKEAFSRADIVVANHDLVLSDLVLG-GGILLPSPEKSLLVFDEA 269 Query: 228 HQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTEL------KDTQQLQKCADRLAQSAQD 281 H LP + +F +SL L + I + + +Q A+ L S Sbjct: 270 HHLPGKSLSHFRESLDLEGLAPWIERIPGLLERISAFFDVRERDKTVQAQAEALTNSLMT 329 Query: 282 FRLQLGEP--------------------GYRGNLRELLA-------NPQIQRAFLLLDDT 314 L E +RG+ + L + + Sbjct: 330 LGTWLEEHWEGKPAGSFSSETEQDGANGIFRGSREQSLWRFPGGKFPDAMIDPSRIGASA 389 Query: 315 LELCYDVAKLSLGRSAL------LDAAFERATLYRT------------RLKRLKEINQP- 355 + + +L + A + ER + RL L E P Sbjct: 390 ARVLAERLQLERDKLAEATTGSDVRRNRERDAFFLDVGVHLEKTLDAVRLLSLYEKVDPE 449 Query: 356 ---GYSYWY----ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHF 408 ++ W E + L +P+ A +E++ ++ + TSATL F Sbjct: 450 GKAPFARWATMWKESGTFSHRLEASPVWPATLLEEVLWRRVSACCLTSATLMSLGSFKSF 509 Query: 409 TSRLGIE---QAESLLLPSPFDYSRQALLCVLRNLPQTNQ-PGSARQLAAMLRPIIEANN 464 +SR G+ L L SPF RQ +L + R++ L ++ Sbjct: 510 SSRCGLSMLTGVSFLSLDSPFPLDRQGVLSLPVMRSDPTDFESHTREIVESLPAVLSPT- 568 Query: 465 GRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLL----QQFVSAGNALLVATSS 520 G +L +S M + + VL+QGE S+ +L Q+ + ++L SS Sbjct: 569 GGALVLFSSRRQMEAVRKGLSPEWQNRVLVQGERSRKDILALHEQRVRAGEASVLFGLSS 628 Query: 521 FWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQG 580 F EG+D++GD + V+I K+PF P +P+ + E R RGGDPF E+ LP+A + L Q Sbjct: 629 FSEGLDLKGDLCTHVVIAKIPFPVPTEPVEETLSEWIRSRGGDPFREIALPEAGLRLVQA 688 Query: 581 VGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTR 621 GRLIR DRG++ I D RL+ + YG L SLPP R Sbjct: 689 AGRLIRSETDRGIVTIFDKRLLEKNYGVHLLRSLPPFRLER 729 >UniRef50_C5BWL9 Helicase c2 n=14 Tax=Actinomycetales RepID=C5BWL9_BEUC1 Length = 679 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 198/650 (30%), Positives = 286/650 (44%), Gaps = 53/650 (8%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 G R Q +MA+AV A + G PL+V+AGTGTGK+ AYL PA+ + +++I+ST + Sbjct: 40 GGTRRAGQHEMALAVAHAFDDGVPLLVQAGTGTGKSLAYLVPAIVRAVTSDERIIVSTAT 99 Query: 73 KALQDQLYSRDLPT----VSKALKYTGNVALLKGRSNYLCLERLEQ-----------QAL 117 ALQ Q+ ++DLP + +L VALLKG NY+C ++ Sbjct: 100 LALQRQILTKDLPLARGVLEASLPRPPAVALLKGWHNYVCRHKVTGGYPAEDEPGLFSLD 159 Query: 118 AGGDLPVQ---------ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC 168 G D P + + +V+ LR W+ +T GD V + +AW V+ T C Sbjct: 160 GGADHPRRSAEVGEFETLGEEVVRLREWAEETTTGDRDDLVPGVGE-RAWRQVSVTAMEC 218 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAH 228 LG CPM +CF AR+ + ADVVV NH + + G ++PE D ++ DEAH Sbjct: 219 LGQKCPMLAECFPEAARRASRSADVVVTNHAML----GIAAGGSPGVLPEHDGLVVDEAH 274 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE 288 +L D + LS+ + A+ L + Sbjct: 275 ELADRVTAQATVELSAPAVERAARIARRHAGAALAGLDDAAQALRT-----------GLG 323 Query: 289 PGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKR 348 G L + L + L E + G + A + ++ Sbjct: 324 LVPEGRLPDGLPESLVGTVTTLRAAAHEGMSALGPNPPGSTDGAGALVMARSALLVLVEI 383 Query: 349 LKEINQPG-----YSYWYECTSRHF-TLALTPLSVADKFKELMAQKPGSWIFTSATLSVN 402 + W E L + PL VA + + + TSATL + Sbjct: 384 ADRLLSDAVAQRRDVLWCERGRDGASRLRVAPLDVAGLVATHLVAD-RAAVLTSATLELG 442 Query: 403 DDLHHFTSRLGI--EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPII 460 S LG+ + + SPFDY+RQ + V R+LP+ G ++++ A L ++ Sbjct: 443 GSFAPVASSLGLATGAYRAERVASPFDYARQGIRYVARHLPRPGSDGPSQEMLAELAELV 502 Query: 461 EANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSS 520 +A GR L +S A++ R L VL QGE L+++F L T S Sbjct: 503 QAAGGRTLGLFSSRRAAEVAAQEIRDRTGLDVLCQGEDVLPTLVRRFAEEEATSLFGTLS 562 Query: 521 FWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQG 580 W+GVDV GD+ LV ID++PF PDDP+ ARME RGG+PF V A + L QG Sbjct: 563 LWQGVDVPGDSCRLVTIDRIPFPRPDDPVGAARMEVVAARGGNPFMTVAATHAALLLAQG 622 Query: 581 VGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 GRL+R DRGV+ I D+RL YG SLPP T D A A L Sbjct: 623 AGRLLRRTTDRGVVAILDSRLATARYGEFLSRSLPPMWPTTDPAVARAAL 672 >UniRef50_C4FB13 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4FB13_9ACTN Length = 977 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 190/699 (27%), Positives = 300/699 (42%), Gaps = 74/699 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + + FAP G + + PG++PR Q QMAV V A+ V+EAGTG GK+ AYL P Sbjct: 284 IEERFAPGGLVNRMYPGYEPRSEQVQMAVEVRDALATSTHRVIEAGTGVGKSIAYLVPMA 343 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 A R K V I+T S L DQL +LP +++ + LKG +Y CL +L++ A Sbjct: 344 ELARRNKVTVGIATKSNNLADQLIYHELPRLAREMDGGLTYCALKGYDHYPCLRKLDRLA 403 Query: 117 L----AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD 172 P L+ + +L +++ Q+ GD + S +T+++ C Sbjct: 404 RAQEIKTNRDPADTLTAIAVLYAFACQSPTGDFDGL-GIRWRSVNKADLTTSSRECARRL 462 Query: 173 CPMY-KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLP 231 CP Y C V +R++A DVVV NH L ++ + G+++P + DEAH + Sbjct: 463 CPFYPDKCMVHGSRRRAARVDVVVTNHSLLFRNVAAE----GKILPPIRHWVVDEAHSIE 518 Query: 232 DIASQYFGQSLSSRQ----LLDLAKDITIAYRTELKD----------------------- 264 A + + +S+ + L D A +D Sbjct: 519 SEARRQWAIKVSADESRAVFERLGGDRAGALGKIARDLALSDAATLFMGLTVKASSSTQR 578 Query: 265 ----TQQLQKCADRLAQSAQDFRLQLGEPGYRGN-LRELLANPQIQR----AFLLLDDTL 315 +L LA++A+ + GN LR+ + + A LD+ Sbjct: 579 ASLAMAELFDAVRELARAARSEGGYDNANMWIGNDLRDSMVWTGFEEVGRTALDALDEAT 638 Query: 316 ELCYDVAKLSLGRSALLDAAF----ERATLYRTRLKRLKEINQPGYSYWYECTSR----H 367 + + + L R R L+ + + Y Y + R Sbjct: 639 KNLASLVETVAEEKPDLVTDVADGQRRMRELRDGLRLILDGADDRYVYSCQVNRRLKAGG 698 Query: 368 FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA-----ESLLL 422 L L V + E + + IF SAT++V+D HF +G+++ S+ L Sbjct: 699 ECLTAERLDVGEALAEEWLPEVHTAIFASATVTVSDSFDHFQHAVGLDRISSSSSRSVHL 758 Query: 423 PSPFDYSRQALLCVLRNLPQT-NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 S +D+ R + V ++P ++ L +L + A G L T+ M +L Sbjct: 759 DSSYDFERNMAVVVASDMPDPRSRDAYLSALETLLVDVHLAMGGSTLTLFTNRRDMEELY 818 Query: 482 EQFRATM---TLPVLLQGETSKGQLL-QQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 ++ + L + Q T+ ++L +F+S + L A +FWEG D GDTL V+I Sbjct: 819 DRVEPRLAQRGLALDCQRRTTSAKILRDRFLSNEKSSLFALKAFWEGFDAAGDTLRCVVI 878 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 KLPF SP DPL R + LP+AV+ +KQ GRLIR + D GVLV+ Sbjct: 879 PKLPFASPSDPLSCERGAREDR----AWARYSLPEAVLEVKQAAGRLIRTSTDAGVLVLA 934 Query: 598 DNRLVMRPYGATFLASLP-PAPRTRDIARAVRFLAIPSS 635 D+RLV + YG FL SLP P R + + R+L + Sbjct: 935 DSRLVSKGYGKKFLNSLPAPHQRIE-VRQVGRYLEMWRE 972 >UniRef50_Q47MW9 Helicase c2:DEAD/DEAH box helicase, N-terminal n=12 Tax=Actinomycetales RepID=Q47MW9_THEFY Length = 706 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 198/661 (29%), Positives = 291/661 (44%), Gaps = 65/661 (9%) Query: 21 REPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKKVIISTGSKALQ 76 R+ Q MA +V AI+ + LVV+AGTGTGK+ YL PALR V++ST + ALQ Sbjct: 51 RDGQATMARSVAAAIDSREHLVVQAGTGTGKSLGYLVPALRHAVAANATVVVSTATIALQ 110 Query: 77 DQLYSRDLPTVSKA----LKYTGNVALLKGRSNYLCLERLEQQALAGGDLP-------VQ 125 +QL RDLP +++A L A+LKGR NYLC RL Q A + Sbjct: 111 NQLIGRDLPRLTEALEPLLGRRPVYAILKGRRNYLCRYRLSQAATGPEEAELFDPHLLSS 170 Query: 126 ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG-SDCPMYKDCFVVKA 184 + V L W+ +T+ GD D AW V+ + C+G CP+ DCF A Sbjct: 171 LGRQVRRLHEWAEETLTGDRDDLTPGVSD-LAWRQVSVGANECIGPQMCPVSDDCFAELA 229 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 R + + AD+VV NH L D V L+P+ D++I DEAH+L D + LS Sbjct: 230 RAETIGADLVVTNHALLAIDAVQ----GYRLLPDHDLLIVDEAHELVDRVTSVATGVLSD 285 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE-PGYRGNLRELLANPQ 303 R + AK EL +RLA++A L L + P R + Sbjct: 286 RSISLAAKRAAPVCDVELT---------ERLAETADGLALMLADTPPGRLDHLPDPLATA 336 Query: 304 IQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLK-----EINQPGYS 358 + L + + ++ A +R+ + Sbjct: 337 VAAVRDAAHACLSALPEPPRDDPHAASARRLALAGLEEVHCTAERILLCVQQPLRDRQDV 396 Query: 359 YWYECTSRH-FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-- 415 W+ +R L + PL+V ++ + + + + TSATL++ + G+ Sbjct: 397 VWFARGARQTPGLRIAPLAVNRTLRQALFTE-RTTVLTSATLALGGSFDLMARQWGLGPL 455 Query: 416 -------------------------QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSAR 450 + ++ + SPF+++R +L + +LP + Sbjct: 456 PDHDPAEAAEPAETTATPSAEPSPLRWRAIDVGSPFNHARSGILYIATHLPPPGRESLHP 515 Query: 451 QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSA 510 + + +I+A GR L +S AE+ R + P+L QG+ S G L+QQF + Sbjct: 516 EYLDEMAELIDAAGGRTLGLFSSTRAAVHAAEELRERLPYPILCQGDDSTGHLVQQFAAD 575 Query: 511 GNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQL 570 L T S W+GVDV G L LVI+D++PF PDDPL AR +GG+ F EV Sbjct: 576 EATCLFGTLSLWQGVDVPGPALQLVIVDRIPFPRPDDPLASARQRAIGAQGGNGFLEVAA 635 Query: 571 PDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 A + L QG GRL+R D+GV+ + D RL YGA ASLPP T D A L Sbjct: 636 THAALLLAQGTGRLLRSVHDKGVVAVLDPRLATARYGAFLRASLPPYWGTTDPQVARAAL 695 Query: 631 A 631 Sbjct: 696 R 696 >UniRef50_Q482M5 ATP-dependent helicase DinG n=3 Tax=Gammaproteobacteria RepID=Q482M5_COLP3 Length = 712 Score = 423 bits (1088), Expect = e-117, Method: Composition-based stats. Identities = 173/700 (24%), Positives = 291/700 (41%), Gaps = 95/700 (13%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAI-----EKGQPLVVEAGTGTGKTYAYLA----PAL 60 + + + F PR+ Q + + + + + + + +EAGTGTGK+ AY AL Sbjct: 16 AIGENLTHFNPRKQQTLLIAEIAKTLAGEYSKDRKIITIEAGTGTGKSLAYSLGAIPLAL 75 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL-------- 112 KKV IST + ALQ+QL +DLP + K + L KGR Y+C ++L Sbjct: 76 ARDKKVCISTATVALQEQLVDKDLPFLKKYAGLNFDFTLAKGRQRYVCRQKLTLAVTTGS 135 Query: 113 --EQQALAGGDLPVQILSDVILLRSWSNQ----TVDGDISTCVSVAEDSQAWPLVTSTND 166 E D+ L + GDI + + W V S Sbjct: 136 GNEPAQAGFTFAEKPDAKDIRTLNKMHKALLDGSWLGDIDSWETHLPQH-IWHQVQSDKH 194 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADVMIF 224 +CL + C KAR+ A V+VVNH L LAD+ E G G+++ PE I Sbjct: 195 SCLKNLSEHTH-CPFHKARETMDQAHVLVVNHSLLLADL---ELGGGKILSPPEDTFYII 250 Query: 225 DEAHQLPDIASQYFGQSLSSR---QLLDLAKDITIAYRTELKD----------------- 264 DEAH LP + + S++ + + L +D +K Sbjct: 251 DEAHHLPKVTRDFSSASITLKGSIEWLTKLRDTGDKMAKLIKSKNAISPALKLGDDCQDL 310 Query: 265 TQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFL------LLDDTLELC 318 ++QK + + +A + L+ N + N + F L + E Sbjct: 311 LVEMQKVLNFIEANANVYFLENESSAQNNNFTKNSKNDEQVYRFENGIIPQTLKNWAEDL 370 Query: 319 YDVAKLSLGRSALL------------------DAAFERATLYRTRLKRLKEINQ------ 354 ++K SL L + A RL+ L+ + Sbjct: 371 QSLSKKSLSHLNKLYNGLIEAVKDGDTQMYVAEPLLAEAGFMLQRLENLQSLWFMYAKSD 430 Query: 355 ----PGYSYWYEC---TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHH 407 + W E + + L+ +P+ V + ++ + + SATL + H Sbjct: 431 SDKGAPMARWLEKITLKRQDYLLSASPIEVGFTLENMLWSQCEGAVLCSATLRALNSFDH 490 Query: 408 FTSRLGI---EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANN 464 F ++G+ + ++ + SPFDY + L + + + + P ++ A L ++ Sbjct: 491 FRFQVGLKNNDGSQYQQVDSPFDYQNNSQLVIAKMDNEASAPEFTDEVIAKLPKYLKQ-G 549 Query: 465 GRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLL----QQFVSAGNALLVATSS 520 +L +S+ M +A R L +++QGE S+ Q++ ++ +++ T S Sbjct: 550 NASLVLFSSYWQMNKVALALREDHKLEIMVQGELSRQQIIALHKKRCDDNKESIIFGTQS 609 Query: 521 FWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQG 580 F EG+D+ GD L+ +II KLPF+ P P+ +A+ E +GG+PF + +PD L Q Sbjct: 610 FSEGLDLPGDYLNNLIITKLPFSVPTSPVEQAQAEYVTAKGGNPFMTLSVPDTSKKLVQA 669 Query: 581 VGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 GRL+R+ D GV+ + D R+V + YG L SLPP R Sbjct: 670 CGRLLRNEMDEGVITLLDKRVVTKRYGKQLLDSLPPFSRV 709 >UniRef50_A6VX61 Helicase c2 n=3 Tax=Gammaproteobacteria RepID=A6VX61_MARMS Length = 707 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 181/687 (26%), Positives = 283/687 (41%), Gaps = 92/687 (13%) Query: 19 KPREPQRQMAVAVTQAI------------EKGQPLVVEAGTGTGKTYAYLAPAL----RA 62 KPR QRQM A+ + + E+ V+EAGTGTGKT +Y A+ Sbjct: 24 KPRAGQRQMIGAIARTLGNIKQGSEGERLEEKHVAVIEAGTGTGKTLSYCLAAIPIAKAR 83 Query: 63 KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL 122 K+IIST + ALQ+Q+ ++LP + + + T L KGR YLCL LE + Sbjct: 84 GLKLIISTATVALQEQILHKELPDLLEHTELTFKYTLAKGRGRYLCLNNLEGFLSSEEQA 143 Query: 123 PVQILSDVILLRSWS----------------NQTVDGDISTCVSVAEDSQAWPLVTSTND 166 + + + S DGD + D Q W +T+ + Sbjct: 144 MDDMFAGLFEQHLHSDDINTVLYQEMDTALQKGDWDGDKDNWAGIVRD-QDWRRLTTDHQ 202 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADVMIF 224 C +C Y C KAR + ADV+V NH L LAD+ + G G ++ P+ + IF Sbjct: 203 QCTNRNCANYSACPFFKARAEIEVADVIVANHDLVLADLSL---GGGAILTPPKETIYIF 259 Query: 225 DEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAY---------------RTELKDTQQLQ 269 DE H LPD A +F + +Q + + + + LK QQ+Q Sbjct: 260 DEGHHLPDKAIGHFRHEVRLQQSITWLRQLEKNLVNLKQELTDDVSVTGQLLLKIPQQIQ 319 Query: 270 KCADR----------------LAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDD 313 + L Q R + G+ Q+ F ++ Sbjct: 320 SIVNFIQYAQQGLAPYIQGLGLDQENNQHRFEFGQIPDELRQLAYSLQTSYQKLFNNIES 379 Query: 314 TLELCYDVAKL---------SLGRSALLDAAFERATL---YRTRLKRLKEINQPGYSYWY 361 + C + + +L R + + N P + W Sbjct: 380 IQDECKKTKQNEGMGVTPETAETWQPILGVILGRLEQCIGLWCLYSTVDDQNFPPNARWL 439 Query: 362 ----ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-Q 416 + + L +P+ A+ ++ + K + TSATL+ + H F R G+ + Sbjct: 440 VLSGQGMEQDIELGGSPILAANTLRQQLWDKCFGAVVTSATLTALNQFHRFNMRSGVPRE 499 Query: 417 AESLLLPSPFDYSRQALLCVLRNLPQTNQ-PGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 +E L + SPF++ LL V + N+ ++ L + +L +S Sbjct: 500 SEYLRVISPFNFQENGLLVVPDMEHEPNRVEQHTAEIVTYLDKHVN-TEKGSLVLFSSRR 558 Query: 476 MMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV----SAGNALLVATSSFWEGVDVRGDT 531 M ++A+ + +L+QGE SK +L +LL+ +SF EGVD+ GD Sbjct: 559 QMEEVAQSVSVGLQEILLMQGEQSKRVILDSHKSRIDEGKGSLLLGLASFAEGVDLPGDY 618 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 L+ V I K+PF PDDP+ E + RGG+PF E+ +PDA + L Q GRL+R D Sbjct: 619 LTCVYIAKIPFAVPDDPVEATLAEWIQKRGGNPFMEITIPDASLRLVQATGRLLRSEKDS 678 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAP 618 G + I D RL + YG+ + SLPP Sbjct: 679 GEIHILDKRLRTKRYGSQLINSLPPYK 705 >UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRP7_FIBSS Length = 905 Score = 421 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 180/682 (26%), Positives = 306/682 (44%), Gaps = 57/682 (8%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 +++ F G ++ + +KPR Q+ A + + + KG V+EA TG+GKT +YL A Sbjct: 226 VSEFFKEGGFISFVVDDYKPRHNQQDFASVMERNMYKGGLCVLEAPTGSGKTLSYLITAA 285 Query: 61 RA---KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL 117 ++V+IST ++ LQ+QL++ +P ++K A+LKGR NYLCL + E+ + Sbjct: 286 NKAITGERVLISTATRTLQEQLWTEAIPQIAKIYNGELRPAILKGRDNYLCLRKFEELLM 345 Query: 118 AGGDL-PVQILSDVILLRSWSNQTVDGDISTCVSVAE--DSQAWPLVTSTNDNCLGSDCP 174 L + + L W T GDI+ C S ++ + W ++ + C G + Sbjct: 346 HPQTLLSAEERDSFMALIPWVLSTETGDINECNSFSQSRNRVLWSKLSCSASCCNGENHS 405 Query: 175 MYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIA 234 +++C + A++KAM+A++V+VNH LFL+D+ + L+P + ++FDEAH+LP+I+ Sbjct: 406 HHENCPALIAKRKAMNANMVLVNHSLFLSDLQLD----FALLPSYEHIVFDEAHRLPEIS 461 Query: 235 SQYFGQSLSSRQLLDLAK-----------DITIAYRTELKDTQQLQKCADRLAQSAQDFR 283 +Q FG+S+S ++AK I + +L + D+L+++ + Sbjct: 462 NQVFGRSISFFGFRNIAKTLEPSKAGGDGLIAEIASRIPAEKPELHEICDKLSEALGEAE 521 Query: 284 LQL----------------GEPGYRGNLRELLANPQIQRAFLL-------LDDTLELCYD 320 L G G+ L FL + L Sbjct: 522 KALHRFFMKIGKKLAKQKNGRSGFTYTNSILAEYEADPATFLEQYNNARGFAEKLVAATA 581 Query: 321 VAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYEC--TSRHFTLALTPLSVA 378 G + LD+ + + + + + + + + ++ E L PL Sbjct: 582 NMDGLKGIVSDLDSRMTEISHFISDFEFVTKAGRNDWVFYMEEPFNPHTIKLHALPLHSG 641 Query: 379 DKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQA------ 432 + ++E S FTSATLSV DL +F ++G++ P Y+ Q+ Sbjct: 642 NVWREKFYPWIKSATFTSATLSVQADLTYFLQKMGMDNLRLGKQPFVRVYTEQSDVNERR 701 Query: 433 LLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP- 491 + V + LP+ + P L L ++ +L TS A M Sbjct: 702 SVMVAKFLPKPSAPEFGDALNDTLLKVLPNVEENTMVLFTSVATMMKAQAALAPAFAERN 761 Query: 492 --VLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDP 548 +L Q + S L+ F A L+ S WEGVD GD L L++I KLPF +P DP Sbjct: 762 KLLLCQHVDGSLDGLVAMFRKERGACLLGCQSLWEGVDFPGDALKLLVITKLPFPNPSDP 821 Query: 549 LLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGA 608 L+ + + + F + +P+A I L+QG+GRL+R D G ++I DNR+V+ YG Sbjct: 822 LVAGLTNEMKAANKNFFKDYFIPEAYIELRQGMGRLLRSDSDSGKVLILDNRVVLERYGK 881 Query: 609 TFLASLP-PAPRTRDIARAVRF 629 TF ++ RF Sbjct: 882 TFARIWNFKNRIAGSVSDIERF 903 >UniRef50_C5CG21 Helicase c2 n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CG21_KOSOT Length = 835 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 168/680 (24%), Positives = 299/680 (43%), Gaps = 63/680 (9%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA- 62 F+ G L + G++ R+ Q A+ + ++IE Q +++EAGTGTGK+ AYL P+ Sbjct: 143 VFSEGGLLEDILEGYEYRQEQFMTALEIAESIEGKQGIMIEAGTGTGKSLAYLIPSAYYS 202 Query: 63 ---KKKVIISTGSKALQDQLYSRDLPTVSKALKYT-GNVALLKGRSNYLCLER-LEQQAL 117 +++++ST ++ LQDQL +D+ V K V LKGR Y CL++ E+ Sbjct: 203 ISKGEQIVVSTRTRMLQDQLARKDVAIVKKLPNLEELRVWTLKGRERYFCLKKYFEELEY 262 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 A G + +++ + WS +T GD+ E+ T+T CL CP + Sbjct: 263 AVGSGKSKNRTELFGVLLWSIKTGSGDLDELHLKEENR---NRFTATRFECLRKLCPFFN 319 Query: 178 DCFVVKARKKAMDADVVVVNHHLFLADMVVKESG--------FGELIPEADVMIFDEAHQ 229 C +R A +AD+V+ NH L ++ ++ G L+P+ V+I DEAH+ Sbjct: 320 RCPYYNSRDNAQNADIVITNHSLLFSEAHIRLEDSREGEDEPIGMLLPKFKVLIVDEAHE 379 Query: 230 LPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQL--QKCADRLAQSAQDFRLQLG 287 L ++ +L + + + + L+ + + + L + F ++ Sbjct: 380 LEMSLTEAMSFNLVPHEAVSTIRKAINCSKDALRSIRNHFERSFLEELWGRLRKFTAEIE 439 Query: 288 ---------------EPGYRGNLRELLANPQ--------IQRAFLLLDDTLELCYDVAKL 324 + + + EL A + IQR +L L + +VA+ Sbjct: 440 KILKTIVVSYNNCSTDEKHSIDNEELEALKKDIGELYTIIQRFRAVLIQLLRMVEEVAEE 499 Query: 325 -----SLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW---YECTSRHFTLALTPLS 376 + L + +L L Y H + P+ Sbjct: 500 EETPVLEKLNMELKSVTSELDGLIRQLLGLSREEDGRVVYVRRTVTNNGNHLIITSAPIK 559 Query: 377 VADKFKELMAQKPGSWIFTSATLSV----NDDLHHFTSRLGIEQA-ESLLLPSPFDYSRQ 431 D+ + +F SATL V +D ++ LG+ ++ ++ L S FD+ Q Sbjct: 560 -NDQLMAAIFPDVPVKVFISATLWVYSGRSDGFNYARRILGLNESFHAIKLGSSFDFQEQ 618 Query: 432 ALLCVLRNL--PQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM- 488 +++++ Q N Q A ++ +++ G +L TS+ M + + + Sbjct: 619 LKFYIVKDMAKYQPNNREYLNQGANLISEMLKIVKGSAMVLFTSYKDMYYVISKISEELL 678 Query: 489 TLPVLLQ-GETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 + + +Q S ++ + V++ N+++ SFWEG+D+ G+ L L+II KLPF PDD Sbjct: 679 DIRLQIQEPNNSPTAIVNEHVNSENSVIFGVRSFWEGIDLPGEHLKLLIIFKLPFERPDD 738 Query: 548 PLLKARMEDC-RLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV--MR 604 PL+ AR++ + ++ P + +QG+GRLIR +DRGVLV+ DNR+V + Sbjct: 739 PLINARIKHYGTKNYVEGLNKYYYPKMITAFRQGIGRLIRTRNDRGVLVVLDNRIVDGNK 798 Query: 605 PYGATFLASLPPAPRTRDIA 624 Y L SL P + I Sbjct: 799 IYSRKLLRSLSPDVKINVID 818 >UniRef50_C1TS05 DNA helicase, Rad3 n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TS05_9BACT Length = 652 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 188/659 (28%), Positives = 298/659 (45%), Gaps = 43/659 (6%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIE--KGQPLVVEAGTGTGKTYAYLAP 58 MTD F PDG + GF+ R Q +++ AV +E G+ L EA G GKT+A LAP Sbjct: 1 MTDLFGPDGLFCNNLSGFEYRPQQERLSQAVLGLLEGNSGRILAAEAPPGVGKTFALLAP 60 Query: 59 ALRA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQ 114 A+ V++ T S LQ+QL ++DLPT+S+ L LLKGRSNY C+ + + Sbjct: 61 AVTWAKTTGNTVLVLTSSITLQEQLINKDLPTLSEVLGLDVPFGLLKGRSNYACMRKASE 120 Query: 115 QALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCP 174 G ++ W T +GD+S A ++ + CLG+ CP Sbjct: 121 LGDEGLLSFNDKGEASGVILEWLALTEEGDLSEVPLPPG-HPAVERISGSFRGCLGARCP 179 Query: 175 MYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIA 234 CFV +A + A VVV N+HL+ + + + F A +++ DEAH++P+ A Sbjct: 180 YRDRCFVQRALRNASRWTVVVANYHLYFSYALGRGGAFP---VPARLVLCDEAHRMPEAA 236 Query: 235 SQYFGQSLSSRQLLDLAKDITIAYRTELK------DTQQLQKCADRLAQSAQDFRLQLGE 288 S S + + + EL D Q+ L ++ + F +L Sbjct: 237 SSVSAVSTRMDDWIRHLRRVPSPGLNELGAKTVGYDQQKTLDDVKSLNRAVRLFFERLDS 296 Query: 289 PGYRGNLRELLANPQIQRAFLLLD-------------DTLELCYDVAKLSLGRSALLDAA 335 G + L ++ +LD L+ + A A Sbjct: 297 SGIKNGLFIEPPEELVREGLDVLDLAAPVIATGRRFSSYLDDLGPSGEEMARDGAEYLAW 356 Query: 336 FERATLYRTRLKRLKEINQ-PGYSYWYECTSRHFTLALTPLSVADKFKELMA-QKPGSWI 393 + + +++ P ++YW E L+ P D P + Sbjct: 357 VQVLDEMGQAFRWCLDVSDYPDWTYWKE----DGALSSAPSKCGDILPRAFGGDDPPYMV 412 Query: 394 FTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLA 453 SAT++V+ +++ G+E E+LLL SPF S Q L V+ ++ Sbjct: 413 AVSATMAVDGRFDYWSRETGLEPDEALLLDSPFPLSEQMELLVVDLGIAVTDEKYDDRVC 472 Query: 454 AMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR--ATMTLPVLLQGETSKGQLLQQFVSAG 511 ++R + + N G +L +S +++ + R + VL+QG+ K +LL++F Sbjct: 473 RVVRKLCKENGGASLVLLSSTRLLKRVGGYLRRCSGDGYNVLIQGDLPKVELLRRFREDE 532 Query: 512 NALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLP 571 +++LV T SF EGVDV GD+L+ VIID++PF PDDP+ +AR + G F + LP Sbjct: 533 SSVLVGTVSFREGVDVPGDSLTQVIIDRIPFPHPDDPIQRARRDL---EGPSSFVKSVLP 589 Query: 572 DAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP--PAPRTRDIARAVR 628 +A + L+Q VGRLIR DRG + + D RL+ R L SLP P + R + R+V Sbjct: 590 NAKMHLRQAVGRLIRSYGDRGRVAVLDGRLLSRRNWR-VLDSLPDVPIRKIRVVDRSVD 647 >UniRef50_Q2SIT1 Rad3-related DNA helicase n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SIT1_HAHCH Length = 718 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 177/687 (25%), Positives = 275/687 (40%), Gaps = 87/687 (12%) Query: 19 KPREPQRQMAVAVTQAI------------EKGQPLVVEAGTGTGKTYAYLAP----ALRA 62 KPR QR M + + + VVEAGTGTGKT AYL A Sbjct: 24 KPRSGQRHMIAEIARYLSSIELDGEFRRSNDATTCVVEAGTGTGKTLAYLMASIPFAAAL 83 Query: 63 KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQ-------- 114 +KK++IST + LQ Q+ R+LP +++ VAL KGR Y+CL +L+ Sbjct: 84 RKKIVISTATVTLQQQVVQRELPLLAEHTDLEFKVALAKGRGRYICLHKLDSYLAGQEQG 143 Query: 115 -QALAGGDLPVQILSDVILLRSWSNQTVD----GDISTCVSVAEDSQAWPLVTSTNDNCL 169 L G D + + N VD GD + E+S W VT+ + CL Sbjct: 144 ILLLDGPQESSGPDVDAEAYQRFMNWMVDKGWSGDWDSAPEPIEES-LWSTVTTDHRQCL 202 Query: 170 GSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQ 229 C + C KA+ ++ A+++V NH L AD+ + GF PE + IFDEAH Sbjct: 203 NKRCSFFTQCAYYKAKMESEKAEIIVANHDLVFADLALG-GGFVLPPPEETIYIFDEAHH 261 Query: 230 LPDIASQYFGQSL----SSRQLLDLAKDITIAYRTELKD-----------------TQQL 268 + D A +F S S + L L++ + D L Sbjct: 262 MADKALNHFAFSAGLKSSQKMLRGLSRALVEGQSVFAYDEQITNRVSPMAALSQEVHHHL 321 Query: 269 QKCADRLAQSAQD----------FRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELC 318 A L ++ + +R +G ++ L+ L+ Sbjct: 322 DAVARFLNETIEWEENDERATFQYRYPMGVIPEELRKLSAAMADKVGEMTKELEAVLKRL 381 Query: 319 YDVAKLSLGRSAL----------LDAAFERATLYRTRLKRLKEINQPGYS-------YWY 361 ++A+ A L + + + E Q G++ W Sbjct: 382 RELAEKEQPGGAQRQAYDQAVMALSVYQSQVENLEDVWRIMGEEVQEGHTPTARWLTTWA 441 Query: 362 ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL 421 + T + ++P + A ++ + + + TSATLSV ++G+ + Sbjct: 442 KETDSDVVVHVSPTNAAHLLRKRLWSRAFGCVLTSATLSVAGRFDRLAGQVGLPDGSTFA 501 Query: 422 LP-SPFDYSRQALLCVLRNLPQTNQ-PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 + SPFD++ L + L+ L II+ +L ++ M+ Sbjct: 502 IHHSPFDFNNNCTLELCDLGRDPQDSESYLEMLSQALLRIIDEKQA-TLVLFSARKHMQF 560 Query: 480 LAEQFRA-TMTLPVLLQGETSKGQLLQQFV----SAGNALLVATSSFWEGVDVRGDTLSL 534 A + ++ Q +KGQL+ ++L +SF EG+D+ GD L Sbjct: 561 AARALADTKLGSLIITQDSGNKGQLIDTHRSRVDENKGSVLFGLASFAEGLDLPGDYLKH 620 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 VII KLPF PDDP+ E + +GG+PF++V LPDA+ L Q GRL+R D G + Sbjct: 621 VIIAKLPFAVPDDPVEATYAEWLKSKGGNPFNQVVLPDAITRLLQACGRLLRSERDSGKI 680 Query: 595 VICDNRLVMRPYGATFLASLPPAPRTR 621 I D RL R YG L +LPP Sbjct: 681 SIMDRRLWTRSYGRIILNALPPYKVVS 707 >UniRef50_Q8L2A4 DNA helicase n=1 Tax=Proteus vulgaris RepID=Q8L2A4_PROVU Length = 688 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 159/666 (23%), Positives = 265/666 (39%), Gaps = 64/666 (9%) Query: 16 PGFKPREPQRQMAVAVTQAIEKGQP------------LVVEAGTGTGKTYAYLAPAL--- 60 G R Q++M + + V+EAGTGTGKT Y P + Sbjct: 23 KGVTARMGQKRMMNLCYGLVNSIKVDDSGNRTSAPAVCVIEAGTGTGKTLGYSIPLIPLA 82 Query: 61 -RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG 119 +K +I+ST + ALQ+Q+ +DLP + + A+ KGR Y C R ++A Sbjct: 83 QAKEKTLILSTATVALQEQVVHKDLPDIRASAGLDFTFAMAKGRGRYFCKLRAAREAEKE 142 Query: 120 GDL-PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 +L Q + IL + + +GD T V + W + C CP +K Sbjct: 143 MELFGFQDETIKILTDEFDDDLWNGDRDTYP-VEITDKIWQKANAVAGQCPAHHCPHFKS 201 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYF 238 C KAR + DV++ NH + +AD+ + G P+ + +FDE H L A +F Sbjct: 202 CPFYKARDEMDSVDVIIANHDIVMADLSLG-GGVVLPEPKNCIYVFDEGHHLTSKAISHF 260 Query: 239 GQSLSSRQLLDLAKDITIAYRTEL--------KDTQQLQKCADRLAQSA----------- 279 + S + + +I + + L A L + Sbjct: 261 SSTCSLDAAIKWSDEIFDMVIPLVDSYDDNMERYATTLNSLASELKKELVLTKEFLLRNL 320 Query: 280 -----QDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSL------GR 328 D R P + + + L +T + + Sbjct: 321 PFKGEYDNRQTCIFPRGETPHEVIHYAKTVGKVLEELKNTNGKMTAIIEDKAKGPEGGEH 380 Query: 329 SALLDAAFERATLYRTRLKRLKEINQPG-----YSYWYECTS---RHFTLALTPLSVADK 380 ++ + + T + +N+ ++ W + + +P+ + Sbjct: 381 KMIVGELDNKLSTLVTAWAQFVNVNKRDKQGIPFARWVDVNRDKKNEIVINSSPVHAGEM 440 Query: 381 FKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE-SLLLPSPFDYSRQALLCVLRN 439 K ++ + + I TSAT+ + + G+ +LL SPFDY +L + + Sbjct: 441 LKSIVWKDAHAAIITSATIRSLGKFDAYLDQAGLPADTPTLLAQSPFDYENNGVLFIPKM 500 Query: 440 -LPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGET 498 + ++ ++L ++ G C +L S M ++ E + +L+QG Sbjct: 501 KFSPKDSAAHTTEVGSLLPTLVLRKRG-CLVLFASKKQMTEVFEMMPDDIQDKILMQGSI 559 Query: 499 SKGQLLQQFV----SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARM 554 K +++ + ++++ SSF EGVD+ GD + VII KLPF P DP+ Sbjct: 560 PKSEIVSRHKLRIDRGDDSIIFGMSSFSEGVDLPGDYCNNVIIAKLPFMVPTDPVSLTLA 619 Query: 555 EDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASL 614 E G + F+E+ +PDA I L Q VGRLIR D G + I DNRLV + YGA L SL Sbjct: 620 EWMESVGRNTFEEISVPDACIKLIQSVGRLIRTEQDTGAVTILDNRLVTKRYGAGILDSL 679 Query: 615 PPAPRT 620 PP R Sbjct: 680 PPFKRV 685 >UniRef50_A1U100 Helicase c2 n=3 Tax=Marinobacter RepID=A1U100_MARAV Length = 725 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 195/703 (27%), Positives = 289/703 (41%), Gaps = 106/703 (15%) Query: 19 KPREPQRQMAVAVTQAI-----EKGQ------PLVVEAGTGTGKTYAYLAPAL----RAK 63 + R QR M + + + GQ VVEAGTGTGKT AYL A+ Sbjct: 25 RARYGQRLMIAEIARYMGEITDNDGQRTSPPATCVVEAGTGTGKTLAYLIAAIPVAKALG 84 Query: 64 KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP 123 K ++IST + ALQDQ+ +DLP + K K + L KGR YLC+ RLE + G Sbjct: 85 KTLVISTATVALQDQIVLKDLPDLRKHSKLDFSWTLAKGRGRYLCMSRLEARLHDEGHGD 144 Query: 124 VQILSDVIL-----------------LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 + +L L S+ ++ DGD D + W VT+ + Sbjct: 145 SDTMPLFLLDQPVDDEARSRATFENMLASYGSRDWDGDRDHWPEQIPD-EIWRQVTTDHR 203 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPE--ADVMIF 224 C C + C ARK DADVVV NH L LAD+ + G G ++PE + IF Sbjct: 204 QCTNRHCAYFDSCAFFDARKDLDDADVVVANHDLVLADLAL---GGGAILPEPENALFIF 260 Query: 225 DEAHQLPDIASQYFGQSL---SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQD 281 DEAH LPD A +F S+ S+RQ L + + L Q K ++++ + +D Sbjct: 261 DEAHHLPDKALNHFAASVPLNSTRQWLKQLSQALVKMQPWLPAGSQAAKAVEKISTAGRD 320 Query: 282 FRLQLGEPGYR----------------------GNLRELLANPQIQ---------RAFLL 310 L L G L E LA + R Sbjct: 321 LDLALTRVYEEVEQNTGWEFNEERRSAQWRYPDGALPEKLAELAGETRIATAGLCRHLGT 380 Query: 311 LDDTLELCYDVAKLSLGRSALLDAAFERATLYR----TRLKRLKEINQ------------ 354 L D L+ +D K D+ + + +L+ ++ Sbjct: 381 LVDELQSAFDERKDPELDRDTADSWYPVVGSFHARAEDQLRLWIAWSEGVAIVSDEEEPV 440 Query: 355 --------PGYSYWYECTS----RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVN 402 P + W TL +P+ + + + + TSATL+ Sbjct: 441 VEAPARKGPPAARWAVRQRWDHAEDITLFSSPVLADNLLYSRLWSRAYGAVLTSATLTAL 500 Query: 403 DDLHHFTSRLGIEQA-ESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIE 461 SR G+ +A L++PS F Y+ A + V + G A L L + Sbjct: 501 GRFDRLRSRAGLPEASRYLVVPSSFRYAEMATVEVPAMVAMPTDDGFADALVKRLPEL-W 559 Query: 462 ANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQ----QFVSAGNALLVA 517 A +L TS M+ + + +L Q + +K ++L+ + ++L Sbjct: 560 AGEKATLVLFTSRRQMQQVRDALAPEYPELILTQDDMAKNEVLRVHCSRVDEGKPSVLFG 619 Query: 518 TSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITL 577 +SF EG+D+ G L V+I +LPF+ PDDP+ + E RGG+PF E+ +PDA + L Sbjct: 620 VASFAEGIDLPGRYLHHVVITRLPFSVPDDPIEASLAEWVTQRGGNPFMEITVPDASVKL 679 Query: 578 KQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 Q VGRL+R D G + I D R+V R YG L +LPP R Sbjct: 680 VQAVGRLLRTEQDTGRVTILDRRIVARRYGQLLLDALPPFRRI 722 >UniRef50_Q21I38 Helicase c2 n=16 Tax=Gammaproteobacteria RepID=Q21I38_SACD2 Length = 720 Score = 418 bits (1074), Expect = e-115, Method: Composition-based stats. Identities = 174/700 (24%), Positives = 281/700 (40%), Gaps = 103/700 (14%) Query: 18 FKPREPQRQMAVAVTQAI------------EKGQPLVVEAGTGTGKTYAYLAPAL----R 61 KPR Q+ M + + + +G V+EAGTGTGKT +YL AL Sbjct: 23 LKPRYGQKLMIAEIAKTLGSIQLNADGERQTEGHLCVIEAGTGTGKTVSYLLAALPVAKA 82 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 KKV+++T + ALQ+Q+ +DLP + + N L KGR Y+CL +L++ + D Sbjct: 83 LGKKVVLATATVALQEQVVLKDLPDLIRYADLKFNFCLAKGRGRYMCLSKLDKILTSSDD 142 Query: 122 LPV--------------QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDN 167 ++ DGD D W VT+ + Sbjct: 143 TQFIPLYEDEHSEISEFDTKLYTSMMEKLGEGKWDGDRDNWHDEI-DQPVWQRVTTDHRQ 201 Query: 168 CLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADVMIFD 225 C G +C + C AR+ +AD +V NH L LAD+ + G G ++ PE + IFD Sbjct: 202 CTGRNCKFVRQCAFFNARELLDEADCIVANHDLVLADLAL---GGGAILPAPEETIYIFD 258 Query: 226 EAHQLPDIASQYFGQSLSSRQLLDLA-------------------------------KDI 254 E H LPD A +F + + K++ Sbjct: 259 EGHHLPDKALNHFASHTRYKSTIRWLGQSEGQWSNLIEPLTDASYFTQIAAPTEAVFKNV 318 Query: 255 TIAYRTELKDTQQLQKCADRLAQ--SAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLD 312 L Q+ + + + + R E + + + ++ L Sbjct: 319 RSLMEAHLPHMQEWVYALEASNEKDNDRFRRDDRQESSRQLRFEQGVVPAAMEYLARELV 378 Query: 313 DT-LELCYDVAKLSLGRSALLD----------------AAFERATLYRTRLKRLKEINQ- 354 D L+L + KL L++ A L K Sbjct: 379 DAFLDLSMHLGKLHKELETLIEDDYPLVPRVDIETVHGAVGTWLARADGNLSLWKSYADT 438 Query: 355 ---PGY--SYWYECTSRH----FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDL 405 + + W T+ + + + +P+ + ++ + + + TSATL+ + Sbjct: 439 KVIENWPIARWITVTTFNDVMDYEIVSSPILASKALEKDLWSRCCGAVVTSATLTALNSF 498 Query: 406 HHFTSRLGI-EQAESLLLPSPFDYSRQALLCVLRNLPQTN-QPGSARQLAAMLRPIIEAN 463 F R G + + ++PSPFDY +A+L + + N + L II+ Sbjct: 499 DRFKIRSGTYDDSHYSVVPSPFDYPNRAVLRIPSFAVEANFAADHTDSMIEYLPEIIDKK 558 Query: 464 NGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV----SAGNALLVATS 519 G +L +S M ++ +Q A + +L+QG SK L+ +++ + Sbjct: 559 AG-TLVLFSSRKQMLEVFDQLPADFRMLILMQGSQSKQVLVSDHKKRIDEGSGSIIFGLA 617 Query: 520 SFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQ 579 SF EGVD+ G + VII K+PF PDDPL + E RGG+ F ++ +PDA + L Q Sbjct: 618 SFAEGVDLPGKYCTHVIIAKIPFAVPDDPLEASLAEWVESRGGNSFMQITVPDAAMRLVQ 677 Query: 580 GVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPR 619 GRL+R D+GV+ I D RL+ + YG L SLPP R Sbjct: 678 ACGRLLRTESDKGVVTIMDKRLITKRYGQALLNSLPPFKR 717 >UniRef50_C0N9A8 Putative uncharacterized protein n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N9A8_9GAMM Length = 692 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 176/697 (25%), Positives = 283/697 (40%), Gaps = 82/697 (11%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKG---QPLVVEAGTGTGKTYAYLA 57 + F ++ + + FKPR Q+QM+ + +++K + VVEA TG GKT AYL+ Sbjct: 2 VATIFE---RIGQVVADFKPRPQQQQMSEFIAASMQKKAQQRVAVVEAPTGVGKTLAYLS 58 Query: 58 ----PALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE 113 A+ KK ++IST + LQ QL +DLP S AL++ +KGR Y+C +L Sbjct: 59 GTIEAAINNKKVLVISTATVNLQQQLIQKDLPLFSSALEHPIRFVQVKGRRRYVCPSKLS 118 Query: 114 QQALAGGDLPV------------QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLV 161 Q A A + + LL W + DGD + E ++ W + Sbjct: 119 QLATAPEQQELGIDIDDKYKRVLHMAHAKQLLSEWDQERWDGDRDSRSDKLE-AELWQQI 177 Query: 162 TSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADV 221 ++ ++ C G C Y C K R++ + A V+V NH L L+D + G PE + Sbjct: 178 STDSEGCAGKSCSFYLRCPYYKLRREMLSAQVIVANHDLILSDADLG-GGLVLPNPEEAL 236 Query: 222 MIFDEAHQLPDIASQYFGQSLSSRQLLDL------------------AKDITIAYRTELK 263 +FDEAH LP A + ++L+ QL D + Sbjct: 237 FVFDEAHNLPRKALDHAAKALNFVQLYQTTETADSVLKKIPSALAFRQHDFGYMLSELRR 296 Query: 264 DTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLL------------- 310 D + +L Q L R + + N + A L+ Sbjct: 297 DLPAVISHLQQLEMILQSDGLVQDVLEKRISEPRIFWNSPLVNALLIPCQNLLQRANNIY 356 Query: 311 -----LDDTLELCYDVAKLSLGRSALL-------DAAFERATLYRTRLKRLKEINQPGYS 358 L ++ + +LS L F + + ++P Sbjct: 357 KHYSVLAKWIKEGLEKTQLSNKVGEALLPQVGTVQNIFGYLIDFMGLFLEPDQEDRPPNV 416 Query: 359 YWYECTS----RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 W + + P++ A + + S + TSATL H F G+ Sbjct: 417 RWLSQEQFAKQQTLVIHAGPMTAAYFLDRSLWTRAYSVVLTSATLRGMGLFHRFRMDCGL 476 Query: 415 EQA---ESLLLPSPFDYSRQALLCVLRN--LPQTNQPGSARQLAAMLRPIIEANNGRCFM 469 + L +PSPF+YS QA L + LP Q +++ L II+ + + Sbjct: 477 HRFSEQHFLAVPSPFNYSDQATLNLPHMQFLPNEQQQQWRQEVVKQLASIIDVDEA-TLV 535 Query: 470 LCTSHAMMRDLAEQFRATMTLPVLLQGET-SKGQLLQQF----VSAGNALLVATSSFWEG 524 L TS +M + Q +T +L+QG+T S ++Q+ + +++ F EG Sbjct: 536 LFTSREVMEAVYRQLPQRLTTKILIQGDTLSPKNMVQRHIRQIEAGKGSIIFGMDRFAEG 595 Query: 525 VDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRL 584 +D+ G+ + VII KLPF P+ +A+ E +GG PF + LP + L Q GRL Sbjct: 596 IDLPGNLCTHVIITKLPFPVFTRPIEQAKQEWIIRKGGQPFTALSLPAVSVKLIQACGRL 655 Query: 585 IRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTR 621 +R D G + I D RL+ + YG L LP + Sbjct: 656 LRKETDTGRITILDRRLLSKGYGKQLLQHLPDYRLQQ 692 >UniRef50_Q2BMS2 Helicase, putative n=1 Tax=Neptuniibacter caesariensis RepID=Q2BMS2_9GAMM Length = 707 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 182/688 (26%), Positives = 284/688 (41%), Gaps = 90/688 (13%) Query: 17 GFKPREPQRQMAVAVTQAI-----------EKGQPLVV-EAGTGTGKTYAYLAP----AL 60 G K R Q+ M V + + E G + V EAGTGTGKT AYL A Sbjct: 22 GLKARYGQKMMIAEVARTLGSINSNHEGVREGGNHICVTEAGTGTGKTMAYLLASVPIAQ 81 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 KKV++ST + ALQ+QL +DLP + L KGR Y C+ E+ Sbjct: 82 ARNKKVVVSTATVALQEQLILKDLPQLVTEAGINLTYGLAKGRGRYFCISNAEKVLEQQN 141 Query: 121 DLPVQILSD---------------VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTN 165 +L L + LL +++ DGD + V D W L TS + Sbjct: 142 ELGQIALYEDEVAQKLDQEVILEVKGLLSQYASGEWDGDRDSLVDTVPD-PIWQLSTSDH 200 Query: 166 DNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI--PEADVMI 223 C C + C AR++ D++V NH L LAD+ + G G ++ PE + I Sbjct: 201 VRCTNRRCSNFSSCPFFLARQQLDKWDLIVANHDLVLADLSL---GGGAILSPPEDTIYI 257 Query: 224 FDEAHQLPDIASQYFGQSL---SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQ 280 FDE H L + +F SL SS + L E + L D+LA Sbjct: 258 FDEGHHLSTKTTGHFAYSLRIKSSIRWLSTVTRTLNKLLNEASEHVVLISYIDKLATPFS 317 Query: 281 DFRLQLGE---------------PGYRGNLRELLANPQIQRAFLLLDDTLEL-------C 318 D L E P R + + +Q + L L E Sbjct: 318 DMERSLQEMQTLLNMLLEDKLSGPSDRYRFAQGIIPESLQLSALNLAQAAERVVLKFEQI 377 Query: 319 YDVAKLSLG------RSALLDAAFERATLYRTRLKRLKEINQP----------GYSYWYE 362 D+ K + + + F + + +R++ + + + + W + Sbjct: 378 VDLLKEGMDGELADLPREMGEKWFPQIGAFHSRVQSIYGLARSYSASDQTGALPTARWIQ 437 Query: 363 CTSRHFTL----ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QA 417 + + +P+S AD +E + + + TSATL+ + LGI + Sbjct: 438 KVDGNEGIDLACHSSPVSAADNLEEHLWSQCYGAVVTSATLTALGRFDRLYTDLGIPSDS 497 Query: 418 ESLLLPSPFDYSRQALLCVLRNLPQTNQPG-SARQLAAMLRPIIEANNGRCFMLCTSHAM 476 + SPFD+ A L V P ++++ L ++ +L +S Sbjct: 498 PCAVFNSPFDFQNAAQLRVPAMKTDPGNPDLHNQEISDYLIQLL-PTETSALVLFSSWRQ 556 Query: 477 MRDLAEQFRATM-TLPVLLQGETSKGQLLQQFVS----AGNALLVATSSFWEGVDVRGDT 531 MR + + AT+ +L+QG+ +K ++L+Q +++ +SF EGVD+ G Sbjct: 557 MRYVLDAMPATIVADSILVQGDLAKHEILRQHREKIDQQKASIIFGLASFAEGVDLPGKY 616 Query: 532 LSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 L+ VII KLPF PDDP+ E +G +PF+E +P A + L Q GRL+R +D+ Sbjct: 617 LTHVIITKLPFGVPDDPVDATYSEWIESQGRNPFEEWVIPMASMRLTQATGRLLRTEEDK 676 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAPR 619 G + + D R + R YG LA+LPP R Sbjct: 677 GDITLLDRRFITRRYGKQLLAALPPYRR 704 >UniRef50_Q0A9Y9 Helicase c2 n=2 Tax=Gammaproteobacteria RepID=Q0A9Y9_ALHEH Length = 708 Score = 415 bits (1066), Expect = e-114, Method: Composition-based stats. Identities = 171/683 (25%), Positives = 268/683 (39%), Gaps = 78/683 (11%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAI----EKGQPLVVEAGTGTGKTYAYLAP----ALRA 62 + + +PGF+ R QRQM V + + E + L +E TGTGK+ AYL A Sbjct: 17 VGQNVPGFRSRSQQRQMIAEVARTLAGECEGRRLLAIEGPTGTGKSLAYLLAGIPVARAE 76 Query: 63 KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL 122 +++IIST + ALQ+Q+ RDLP + T + L+KGR Y+C LEQ Sbjct: 77 GRQLIISTATVALQEQIVDRDLPALQANSGLTFSYGLIKGRRRYVCTRNLEQLVGGAAQG 136 Query: 123 PVQILSDVILLRSWSNQTVDGDISTCVSVAED--SQAWPL---------------VTSTN 165 + + W + G++ ++ D + W +T+ Sbjct: 137 EMDLGGPSAGPAHWPRKPQTGELEHLQALYRDLQAGDWDGDLDRRPPPAADLQGPMTTDR 196 Query: 166 DNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD--VMI 223 C G CP DC +AR+ + DV+V NH L LAD+ + G G ++P + + Sbjct: 197 HGCTGRGCPHVSDCPFHRARRGMEEQDVLVANHDLVLADLAM---GGGVILPPPEQVFYV 253 Query: 224 FDEAHQLPDIASQYFGQSL----SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSA 279 FDEAH L A+ F S + L L + A ++ + + +R Sbjct: 254 FDEAHHLAARATDAFRAESPLLASVQWLERLPRLAGQAISLLPEEAGRHLEALERAVNEL 313 Query: 280 QDFRLQLGEPGYRGNLR-------ELLANPQIQRAFLLLDDTLELCYDVAK--------- 323 ++ R R A L+ + +V K Sbjct: 314 SAMLNEMHGMIRRDWQRMNRDGVWRFPAGELPAPLGELVPGLRDASAEVEKHYGRIGQAF 373 Query: 324 -------------LSLGRSALLDAAFERATLYRTRLKRLKE---INQPGYSYWYE---CT 364 ++ + L A R + + P + W Sbjct: 374 AKVTAEEGVTPGSVAERLAPELGEAASRVEHLADTWRLVAREQPSEAPPVARWITALGSG 433 Query: 365 SRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA---ESLL 421 + +A +P+S A + + + + TSATL+ G+E+ L Sbjct: 434 RPDYLVAASPVSAAAMLRNGLWSRAAGAVLTSATLTALGRFDRMRLACGLEEDDGTRYLS 493 Query: 422 LPSPFDYSRQALLCVLRNLPQTNQPG-SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL 480 L SPFDY +A+L V R P +L +L I+E G +L S + + Sbjct: 494 LASPFDYRNRAVLHVPRMASDPRDPEAHTGELIRVLPGILEP-EGGALVLFASARQLDAV 552 Query: 481 AEQFRATMTLPVLLQGETSKGQLLQQF----VSAGNALLVATSSFWEGVDVRGDTLSLVI 536 E A +L Q E + +LL + +++ + F EGVD+ GD V+ Sbjct: 553 YEGLPAEWQGRILRQRERPRVELLAAHARAVEAGEPSVIFGLAGFAEGVDLPGDLCRHVV 612 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 I KLPF PD P+ E RG +PF ++ +PDA + L Q GRL+R D G + + Sbjct: 613 IAKLPFAVPDSPVEATLAEWLESRGRNPFMDITVPDAGMKLVQACGRLLRSEADSGRVTV 672 Query: 597 CDNRLVMRPYGATFLASLPPAPR 619 D RL+ YG L LPP R Sbjct: 673 LDRRLLTHRYGQALLNGLPPFGR 695 >UniRef50_A1VJJ6 Helicase c2 n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VJJ6_POLNA Length = 750 Score = 414 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 183/701 (26%), Positives = 278/701 (39%), Gaps = 92/701 (13%) Query: 9 GQLAKAIPGFKPREPQRQMAVAVTQAI----------EKGQPLV-VEAGTGTGKTYAYLA 57 G++A PGF R Q QM A G L +EAGTGTGKT AY Sbjct: 52 GEVAADWPGFIARPGQYQMMQACLLTFLSAKAPEDEVRTGSHLAQLEAGTGTGKTVAYCL 111 Query: 58 PALRA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLE 113 A+ A KK VI+ST + ALQ+QL+ +DLP +++ + +LKGR+ Y+C RLE Sbjct: 112 AAIVASEVLKKTVIVSTATVALQEQLFQKDLPRLAEIIP-DLRYDILKGRARYVCESRLE 170 Query: 114 --------------------------QQALAGGDLPVQILSDVILLRSWSNQTVDGDIST 147 Q A D + + ++ T DGDI + Sbjct: 171 GVINDVAQDGLLTGELFQDSFGDARRQAAGIVRDRTQAMRWFKSSAKKLNSGTWDGDIDS 230 Query: 148 CVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVV 207 + D Q W V + C G C +++C KAR++A A + V NH L LA + Sbjct: 231 L-AQPPDPQDWRQVQANAHACNGGQCEHFRNCAFFKARRQAASATLQVANHALVLATLQT 289 Query: 208 KESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQ 267 S + + +FDEAH LP IA++ F L + K Sbjct: 290 DSSL---IDAGNTLFVFDEAHHLPGIAAEQFSYRARLGTSSKLLTSLRTVALRHGKALPA 346 Query: 268 LQK------------CADRLAQSAQDFRLQL----GEPGYRGNLRELLANP--QIQRAFL 309 + C D+LA + ++ +P +R + + Q Sbjct: 347 STRPDPVAFAQLVTGCTDKLAMLERYWQDAQLVSADQPVHRFAQGRIPEALVLECQELAT 406 Query: 310 LLDDTLELCYDVAKLSLGRSA---------------LLDAAFERATLYRTRLKRLKEINQ 354 L+ + +A L R L ++ Sbjct: 407 LIRAIASVVSSIAAALKEPDESKSPTQREEQTHAGVELGVYLSRLGTLDKLLSAWATHDR 466 Query: 355 PGYSYWYECTSR------HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHF 408 ++ W E L +P++ A + + K + + TSATL+ F Sbjct: 467 VPWAKWIEWAEDGAGSAPDAWLCASPMTAAQVLSKNLWNKVSAAVCTSATLTACGSFDFF 526 Query: 409 TSRLGIEQA---ESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNG 465 G+ + SL++ SPFDY+ Q L + PG + +L L ++ + Sbjct: 527 DRLSGMNRFPERRSLVVDSPFDYATQGELRIAPMTHSPKSPGFSDELCDKLPGLLREHPH 586 Query: 466 RCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQF----VSAGNALLVATSSF 521 +L TS M+ + VL+QG S+ +LL++ + +++ SF Sbjct: 587 GQLVLFTSRRQMQACHAALPQDLLDQVLVQGVRSRTELLREHGRRVKAGERSIIFGLQSF 646 Query: 522 WEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGV 581 EG+D+ G V+IDKLPFT P P+ +A E +G DPF E+ +P A + L Q Sbjct: 647 GEGIDLPGRLCEHVVIDKLPFTPPSSPVEEALAEWLSGQGRDPFAELSVPRAGMKLAQWA 706 Query: 582 GRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD 622 GR +R DR V+ +CD RLV YG LA LP P R Sbjct: 707 GRGVRTVTDRAVITVCDTRLVTMRYGQAILAGLPAFPLVRS 747 >UniRef50_B2SSY1 ATP-dependent helicase n=13 Tax=Xanthomonadaceae RepID=B2SSY1_XANOP Length = 710 Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats. Identities = 179/676 (26%), Positives = 280/676 (41%), Gaps = 66/676 (9%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEK-GQPLVVEAGTGTGKTYAYLAP----ALRAKK 64 +L PGF R Q QM V++A+ G + EA TG GK+ YL AL KK Sbjct: 34 RLQANTPGFATRRAQSQMIGLVSRALATSGGIGIAEAPTGVGKSLGYLTAGVPIALATKK 93 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL------------ 112 K++ISTG+ ALQ QL RD+P KA +VAL KGR+ YLC Sbjct: 94 KLVISTGTVALQSQLVERDIPAFLKATGLEASVALAKGRTRYLCTRNAAELEGDTSQNAM 153 Query: 113 ---EQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCL 169 EQ PV L ++++ +T +GD+ +T+ C Sbjct: 154 FEDEQALYDRPLSPVDADLAKRLAKAYAARTWNGDLDDAPEQV-SVPLRMRITTPASGCA 212 Query: 170 GSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI---PEADVMIFDE 226 G C C V+KAR +A +VV NH L L+ + + ++ G+ + P +++ DE Sbjct: 213 GRRCSYAAQCPVLKARTDVREAQIVVTNHALLLSSLSLGDAENGQPLIAPPADMLLVLDE 272 Query: 227 AHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKD----------TQQLQKCADRLA 276 H + +A +L + + I + + + A R++ Sbjct: 273 GHHIAGVAIDQGAANLPLDDMARRTGRMQILIAAAYRAVDKDKLGNLLPNEAIEVAARVS 332 Query: 277 QSAQDF-----RLQLGEPGYRGNLRELLA---NPQIQRAFLLLDDTLELCYDVAKLS--- 325 + + F R+ EPG R L PQ A L + ++ + Sbjct: 333 RLLKAFHADVERVWKPEPGERDPLWRAANGKLPPQWGPAIEELGEETRALFNWVHAAHSA 392 Query: 326 -----------LGRSALLDAAFERATLYRTRLKRLKEIN---QPGYSYWYECTSR-HFTL 370 G L A E A + + QP + W + Sbjct: 393 IAKGKQDDSAREGLQRSLGLALEMAEQQHNLWSGWRREDKEGQPPMARWITLSRDGDLIC 452 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-AESLLLPSPFDYS 429 +P+S A + ++ + S + TSATL+ D F G+ AE L SPFD Sbjct: 453 HCSPVSAAQVLRTMIWNEVDSVVMTSATLTGGGDFQSFAIDNGLPDHAEMASLASPFDLP 512 Query: 430 RQALLCVLRNLPQTNQPG-SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 QA L V + +++A L ++ +L TS M +A+ Sbjct: 513 NQAELIVPNFPVTPDDREGHPKEVANYLVRELDWTAKGSIVLFTSRWKMEKVADLMPLAQ 572 Query: 489 TLPVLLQGETSKGQL----LQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTS 544 VL+QGE +K QL L++ + ++L +SF EG+D+ G+ + V+I ++PF Sbjct: 573 RNRVLVQGEGNKSQLITEHLRRIAAGEGSVLFGLNSFGEGLDLPGEACTTVVITQVPFAV 632 Query: 545 PDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMR 604 P DP E RG + F+ + +P A+ TL Q GRLIR + D G ++I D+RL+ R Sbjct: 633 PTDPQTSTLSEWLESRGHNAFNLIAIPHALRTLTQFSGRLIRSSSDHGRVIILDSRLLTR 692 Query: 605 PYGATFLASLPPAPRT 620 YG + ++PP R Sbjct: 693 RYGKRIIDAMPPFKRV 708 >UniRef50_A1WTY2 Helicase c2 n=1 Tax=Halorhodospira halophila SL1 RepID=A1WTY2_HALHL Length = 711 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 170/695 (24%), Positives = 274/695 (39%), Gaps = 87/695 (12%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEK---GQPLVVEAGTGTGKTYAYLAP----ALRA 62 ++ +PGF+ RE Q++M V +A + + L +EA TGTGK+ +YL A Sbjct: 16 RVRDEMPGFREREAQKRMIWEVAKAFDADHPHRLLAIEAPTGTGKSLSYLLGGVPVARSR 75 Query: 63 KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL 122 ++I+T + LQ+Q+ +DLP +++ + + KGR YLC L + G Sbjct: 76 DLPLVIATATVGLQEQILHQDLPKLARYAGIEVDATVAKGRGRYLCPRNLNELVGQSGQA 135 Query: 123 PVQILSDVIL----LRSWSNQT-------------------VDGDISTCVSVAEDSQAWP 159 + W GD+ D P Sbjct: 136 ESGAQQALAGEVLGTARWPRPPQPGEPEQLQAMAEALDGERWGGDLDEWADGVAD-DLRP 194 Query: 160 LVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEA 219 ++TST+ +C G C ++ C V AR + A+VV+ NH L LAD+ + E G L+P Sbjct: 195 MITSTSHSCSGRRCAHFEGCPVYAARDRVARAEVVITNHDLLLADLQLGEEQGGVLLPPP 254 Query: 220 D--VMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDIT------IAYRTELKDTQQLQKC 271 + + + DE H L A Q F S + ++ A + + Sbjct: 255 EQALYVIDEGHHLAAKAVQRFAASARVQAARTWLEEGEGVATDTAAVLPDDTAGEPPDAE 314 Query: 272 ADRLAQSAQDFRLQLGE-------------PGYRGNLRELLANPQIQRAF---------- 308 A RL + + L E G R R A ++ Sbjct: 315 AQRLQERLSEVAAALQEADTFLQHNYRADAEGERWRFRAGQAPDPVRELAGRVADPARGL 374 Query: 309 -LLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ----------PGY 357 L + Y + G + L+ R R R L Q P Sbjct: 375 HEALQAFTDRVYSALEAQRGDTQELERQLPRLGFLRERAANLATTWQLLGEQEAAGVPPV 434 Query: 358 SYWYECTSR-----HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL 412 + W E + ++++P+SVA + + + + TSATL H S L Sbjct: 435 ARWVERQAESDGAVDHRVSVSPVSVAGELARRLWDRCAGAVITSATLRALGRFDHLRSDL 494 Query: 413 GIEQAESLL----LPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCF 468 G+ + ++L+ LPSPFDYSR L N ++ L +++ Sbjct: 495 GLPEDDALISQGWLPSPFDYSRSLLHVPALRSDPRNAEAHLAEVCQWLPELLDPYEA-AL 553 Query: 469 MLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSA----GNALLVATSSFWEG 524 +L TS M +A+ T+ + QGE S+ +L++ A ++L + EG Sbjct: 554 VLFTSRQRMERVAQALPETLREQLQCQGERSREAMLERHREAVDAGQGSILFGLAGMAEG 613 Query: 525 VDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRL 584 VD+ G V+I+++PF P +P++ E + F + LP A + L Q GRL Sbjct: 614 VDLPGRYCDHVVIERIPFGVPTEPVIATLGEWLEDQQRSSFHTLSLPRASLRLIQACGRL 673 Query: 585 IRDADDRGVLVICDNRLVMRPYGATFLASLPPAPR 619 +R DDRG + I D R+V + YG L +LPP R Sbjct: 674 VRSEDDRGRITILDRRVVTQRYGRQLLDALPPFRR 708 >UniRef50_A4ECT2 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECT2_9ACTN Length = 964 Score = 412 bits (1058), Expect = e-113, Method: Composition-based stats. Identities = 188/700 (26%), Positives = 291/700 (41%), Gaps = 74/700 (10%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + D+AP G + + P ++PR+ Q MA+ V A+ G V+EAGTG GK+ AYL P Sbjct: 270 IEADYAPGGLVNRMYPTYEPRDEQIAMALEVRDALVTGTHRVIEAGTGVGKSMAYLVPFA 329 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 A R V I+T S L DQL +LP +++ L + LKG +Y CL +LE+ + Sbjct: 330 EAARRNNITVGIATKSNNLADQLMYHELPKLAEQLDGGLSFCALKGYDHYPCLRKLERMS 389 Query: 117 LAG-----GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGS 171 P L+ V ++ ++ Q+ DGD+ + + S P T+ + C Sbjct: 390 RGQVEITTKRDPADTLTAVAVIMAYVCQSADGDLDSL-GIRWRSVNRPDFTTASRECARR 448 Query: 172 DCPMY-KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQL 230 CP + C V AR++A ADVVV NH L ++ + G ++P + DEAH + Sbjct: 449 LCPFFPDKCLVHGARRRAAHADVVVTNHSLLFRNVAAE----GRILPPIRHWVIDEAHSI 504 Query: 231 PDIASQYFGQSLSSRQLLDLAKD---------------------ITIAYRTELKDTQQLQ 269 A + + + +S+ + L + T+ K T + Sbjct: 505 EREARRQWARVVSADESRVLFERLGGSSTGALSQVSRDLATSEGSTLYLGLTAKATSTVA 564 Query: 270 KCADRLAQSAQDFRL--QLGEPGYRG-------NLRELLANPQIQRAFLLLDDTLE---- 316 + + +A R + GY LRE + D LE Sbjct: 565 RASMAIADVFDGVRELGRRARGGYDNANLWIGPELRESDDWHDFLPSAYAAIDVLEQADK 624 Query: 317 ----LCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR----HF 368 L VA L R LK + + Y Y + R Sbjct: 625 SVDALVQAVAADKPEVVVDLGDISRRLHELAENLKLIIDGTDEHYVYSLQVNRRLRAGGE 684 Query: 369 TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-----AESLLLP 423 ++ + + + + + IF SAT++V+ HF +G+++ + SL L Sbjct: 685 SMTAERIDIGEALATEWLPEVHTAIFASATMTVSKSFEHFNHAVGLDRIGASTSSSLHLD 744 Query: 424 SPFDYSRQALLCVLRNLPQTNQPG-SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 S +D+ + V ++P L +L A G L T+ M DL Sbjct: 745 SSYDFDSNMAVVVAGDIPDPRDRESYLTALERVLFDAHLAMGGSVLTLFTNRRDMEDLYA 804 Query: 483 QFRATMTLPVLL----QGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIID 538 + M L Q +S +L +F++ + L A +FWEG D G+TL VII Sbjct: 805 RVEPKMARAGLELNCQQRNSSPRRLRDRFINEPTSSLFALKAFWEGFDASGETLRCVIIP 864 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 KLPF+SP DPL R + LP+AV+ +KQ GRLIR + D GVL++ D Sbjct: 865 KLPFSSPTDPLSCERNLREDR----AWARYSLPEAVLEVKQAAGRLIRSSTDCGVLILAD 920 Query: 599 NRLVMRPYGATFLASLP--PAPRTRDIARAVRFLAIPSSR 636 RLV + YG FL SLP R A+ +L + +R Sbjct: 921 PRLVTKGYGKKFLTSLPTSSYQRIES-AQIGHYLQLWRAR 959 >UniRef50_Q1QX31 Helicase c2 n=9 Tax=Gammaproteobacteria RepID=Q1QX31_CHRSD Length = 721 Score = 411 bits (1057), Expect = e-113, Method: Composition-based stats. Identities = 189/690 (27%), Positives = 282/690 (40%), Gaps = 93/690 (13%) Query: 18 FKPREPQRQMAVAVTQAI------------EKGQPLVVEAGTGTGKTYAYLAPAL----R 61 PR QR M + + + V+EAGTGTGKT AYL AL Sbjct: 30 LTPRYGQRLMIAEIARTLGGIESDDAGRRLSNEHVCVLEAGTGTGKTLAYLLAALPIAQA 89 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD 121 K+++IST + ALQ+Q+ DLP + AL KGR YLC+ RL+Q G D Sbjct: 90 RGKRLVISTATVALQEQVLHHDLPALKAHSGLDFEFALAKGRGRYLCVARLDQALEGGED 149 Query: 122 LPVQILSDVIL---------------LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 P L + + ++S +GD + + +D+ W +T + Sbjct: 150 NPTLSLFEEAMSSGDGDDFQALAQEMADAYSAGRWEGDRDSWPTGIDDAD-WRRLTIDHR 208 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDE 226 C C + C +AR+ ADV+V NH L LAD+ + G P+ + +FDE Sbjct: 209 QCTNRRCGHFGACAFFRARRGLDQADVIVANHDLVLADLSLG-GGLVLPSPKDCIYVFDE 267 Query: 227 AHQLPDIASQYFGQSLSSR---QLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFR 283 H LPD A +F L + L K T L L + L ++ Sbjct: 268 GHHLPDKALDHFYHRLPVNGTLRWLRTLKKSLAELNTALGVQPTLARLLATLPEAIAALE 327 Query: 284 LQLGEPG----------------------YRGNLRELLANPQIQR-----AFLLLDDTLE 316 +LGE +R + + Q AF L TLE Sbjct: 328 PRLGEAFAMGHRLAEREEGLPDDATDAVHHRFPMGRVPEALSEQAQSMVTAFAELSRTLE 387 Query: 317 LCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW---------------- 360 D+ + SL E+A + + L ++ W Sbjct: 388 SMADILRESLDPEKATGLPREQAESWLPLVALLHGRALEAHALWQAMATPDPAEGIPQAR 447 Query: 361 ---YECTSRH--FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI- 414 +E + T + +P+S A+ + + TSATL+ + R G+ Sbjct: 448 WLTFERIAGDAELTFSASPVSAAETLARHLWGTCHGAVVTSATLTALNRFERLQERAGLA 507 Query: 415 EQAESLLLPSPFDYSRQALLCVLRNLPQT-NQPGSARQLAAMLRPIIEANNGRCFMLCTS 473 + LPSPFDYSR A+L V N+ R L + + E ML +S Sbjct: 508 NRYRYQRLPSPFDYSR-AVLSVPPEAVDPSNREAHERALIDFTKALDER--EAVLMLFSS 564 Query: 474 HAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSA----GNALLVATSSFWEGVDVRG 529 +R + E T+ V+ Q K +LLQ+ + +++ +SF EG+D+ G Sbjct: 565 RKQLRAVLEALPETVRERVVAQNHLPKRELLQRHRARVDAGEGSIIFGLASFAEGIDLPG 624 Query: 530 DTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDAD 589 + L+ V+I +LPF+ PDDP+ E RGG+PF + +PDA I L Q GRLIR Sbjct: 625 EYLTHVVITRLPFSVPDDPVGATLAEWIESRGGNPFMRISVPDASIRLVQACGRLIRKEA 684 Query: 590 DRGVLVICDNRLVMRPYGATFLASLPPAPR 619 D+G + + D R++ R YG L SLPP R Sbjct: 685 DQGRITLLDRRVLTRRYGRALLDSLPPFRR 714 >UniRef50_C9M767 Putative ATP-dependent helicase n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M767_9BACT Length = 639 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 179/645 (27%), Positives = 292/645 (45%), Gaps = 35/645 (5%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAI-EKGQPLVVEAGTGTGKTYAYLAPA 59 M D F DG L+ +P F+ RE Q ++A A++Q + + EA TGTGKTYA + PA Sbjct: 1 MEDIFGSDGLLSMGMPEFEVREGQGELADAISQFLLSDERVFAAEAPTGTGKTYAVMVPA 60 Query: 60 LRA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQ 115 + +++++ T S LQ+QL +D+P + AL LLKGR +Y CL + Sbjct: 61 MLWAQRYGRRLLVLTSSVTLQEQLADKDIPALQAALGLELRCCLLKGRGHYACLRKALSL 120 Query: 116 ALAGG-DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCP 174 G + +WS +T GD++ A + + S++ CLG CP Sbjct: 121 GDEGFLSFDGDDGQLSQRIVAWSGETETGDLAELSLSA-NHPVLARIVSSHQTCLGKLCP 179 Query: 175 MYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIA 234 CF +A ++A ++DVVV N+H + A E D+++ DEAH + A Sbjct: 180 CRDRCFYRRAMRRASESDVVVSNYHKYFA----YRLDGEEFPIPCDLIVCDEAHAMSASA 235 Query: 235 SQYFGQSLSSRQLLDLAKDITIAYRTELK-----DTQQLQKCADRLAQSAQDFRLQLGEP 289 S + + + + A ++ L+ + L L A++ L L P Sbjct: 236 RSVAAVSSRRGEWDHVLRHVPPAVKSLLETSEGDSEKALADVLTSLRAQAEELFLYLQLP 295 Query: 290 GYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA-AFERATLYRTRLKR 348 + ++ + L L V + A + A +R Sbjct: 296 QPENSPNNPYSDRVLASGGELTGGASRLAERVLSHPPAEDDEGNLPAVQWALGLSDMARR 355 Query: 349 LKEINQ----PGYSYWYECTSRHFTLALTPLSVADKFKELMA-QKPGSWIFTSATLSVND 403 L + P ++YW H +L +P++ A E++ + SAT++V+ Sbjct: 356 LNQCCDTSRWPEWAYW----HDHESLKCSPVTGAPMISEVLDTPDAPKIVAVSATMTVDG 411 Query: 404 DLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEAN 463 + + + G+ E+ ++PSPF+ S Q + V+ + ++A + R N Sbjct: 412 KFNFWAAETGLWPDETRIMPSPFNLSEQMSVHVVDLGVRVMDREYGERVAKVCRRYCVRN 471 Query: 464 NGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQGETSKGQLLQQFVSAGN--ALLVAT 518 G +L +S ++ +A + VL QG+ +LL QF +LV Sbjct: 472 KGATLVLLSSRRLLESVAGYLKGHASADGYCVLAQGDKPSAELLAQFRKNDGEAKVLVGL 531 Query: 519 SSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLK 578 +SF EGVDV GD L+ VIID++PF+ PDDP+++AR GG F V+LP A + L+ Sbjct: 532 ASFREGVDVAGDALTQVIIDRIPFSHPDDPIVQARRAL---EGGKYFTAVELPGAKMRLR 588 Query: 579 QGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDI 623 Q +GRLIR D G +VI D+R+ + F+ SLPPAP R + Sbjct: 589 QAMGRLIRSKTDHGRVVILDSRITQKQQWK-FIDSLPPAPLKRVV 632 >UniRef50_A4BE15 ATP-dependent helicase, DinG family protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BE15_9GAMM Length = 704 Score = 410 bits (1054), Expect = e-113, Method: Composition-based stats. Identities = 171/684 (25%), Positives = 269/684 (39%), Gaps = 87/684 (12%) Query: 17 GFKPREPQRQMAVAVTQAI------------EKGQPLVVEAGTGTGKTYAYLAPALRA-- 62 K R Q+ M V + + V+EAGTGTGKT Y A+ Sbjct: 22 DLKARHGQKHMLAQVARTFGTIELDEEGVRVSETPVGVIEAGTGTGKTIGYALSAIPIAQ 81 Query: 63 --KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA---- 116 KK++I+T + ALQ+Q+ S+DLP + N L KGR YLC +LEQ Sbjct: 82 SLDKKLVIATATVALQEQVVSKDLPDILSNTDLQFNAVLAKGRGRYLCTHKLEQLIQFYS 141 Query: 117 ----------LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 + ++ S+ + GD +DS W +TS++ Sbjct: 142 GTVVAMSLFEETMEADEATLNQYNEMMTSFGSGEWSGDRDQWPDKLDDS-LWRTLTSSHR 200 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIP--EADVMIF 224 CL CP Y++C +ARK DADV++ NH L LAD+ + G G ++P E + +F Sbjct: 201 ECLNRRCPHYQNCPFFEARKALDDADVIIANHDLVLADLSL---GGGAILPAPEDTLYVF 257 Query: 225 DEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDT--------------QQLQK 270 DE H LPD A +F ++ + LL+ + + QL Sbjct: 258 DEGHHLPDKALMHFANQMTVKYLLNQFDNWKKQLPKLRLELAYGDSSEFLIDQFSDQLNA 317 Query: 271 CADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELC------------ 318 ++L+ + + + L Q+ +L+ L Sbjct: 318 AHEQLSFAWSALQPWFHRLEETNDQLTLHQPEQLVPVSSILEPLLSPMTGVYTSLTAIEE 377 Query: 319 -----------YDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYS---YWYEC- 363 D + L+ R + + + + P Y+ W E Sbjct: 378 SIRKRLSNTTDLDEKERLQNAMPLIGRWLSRTEPAKDLVSSWLQTDSPDYAPTARWMERI 437 Query: 364 ---TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA-ES 419 + +L +P++ K + + I TSATL+V F ++ GI A Sbjct: 438 NTPDVQDLSLNTSPVTANAVLKAYLWNRCCGAIVTSATLTVEARFDRFLAQAGISDAAHL 497 Query: 420 LLLPSPFDYSRQALLCVLRNLPQTN-QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 L +PSPFDY V + + + + ++ + G +L +S A M Sbjct: 498 LQVPSPFDYPNLVTAIVPEFAVEGGAREAHSESIVRLIESQLPKETGN-LILFSSRAQMY 556 Query: 479 DLAEQFRATMTLPVLLQGETSKGQLLQQFVSA----GNALLVATSSFWEGVDVRGDTLSL 534 ++ E + LQ + K L+ + L +S EGVD+ G+ L+ Sbjct: 557 EVYEALPVDWQDVITLQDDLPKTALIAHHRERLEEGAGSTLFGLASLAEGVDLPGNYLTH 616 Query: 535 VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVL 594 ++I KLPF PDDP+ + +PF V LP A I + Q GRLIR +DRG + Sbjct: 617 LVIAKLPFGVPDDPISSTLSLWLESKQLNPFQVVTLPAATIRMVQACGRLIRHENDRGTI 676 Query: 595 VICDNRLVMRPYGATFLASLPPAP 618 + D RLV + YG T + SLP Sbjct: 677 WVMDRRLVTKRYGKTIINSLPNYR 700 >UniRef50_Q1YS96 ATP-dependent helicase DinG n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS96_9GAMM Length = 668 Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats. Identities = 173/670 (25%), Positives = 271/670 (40%), Gaps = 82/670 (12%) Query: 27 MAVAVTQAIEK----GQPLVVEAGTGTGKTYAYLAPALRA----KKKVIISTGSKALQDQ 78 M V A+ + VVEAGTGTGKT YL AL KK V+++TG+ ALQ+Q Sbjct: 1 MIATVANALSDNDPDKRLAVVEAGTGTGKTVGYLIAALPIARALKKTVVVATGTIALQEQ 60 Query: 79 LYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV-------------- 124 L +DLP + +A + + AL+KGR Y C ++EQ A Sbjct: 61 LIHKDLPELLEACGWDHSCALVKGRGRYACNLKMEQCLDAIKSKDAGLFLFEDEVAFNPN 120 Query: 125 --QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVV 182 + + + T DGD + S +D + W +T C G C C Sbjct: 121 VQTEDLYREMSDALAEGTWDGDRDSWESRIQDVE-WRALTIDRRQCSGRRCRFVNQCAFF 179 Query: 183 KARKKAMDADVVVVNHHLFLADMVVKESGFGELIP--EADVMIFDEAHQLPDIASQYFGQ 240 AR + +++ +V NH L +AD+ + G G ++P E + IFDE H++ D A ++FG Sbjct: 180 NARNELEESECIVANHDLVMADLAL---GGGAILPPPEDCIYIFDEGHRIGDTAIRHFGA 236 Query: 241 SL----SSRQLLDLAKDITIAYRTELKDTQQLQ----------KCADRLAQSAQDFRLQL 286 S L L K KDT + K + L + + L Sbjct: 237 ECRVNNSITWLERLQKQCKGQVPVFEKDTALAEQLPRLEKGATKIIELLNVAYPILQQAL 296 Query: 287 GEPGYRGNLRELLANPQIQRAFLLLD-----------DTLELCYDVAKLSLGRSAL---- 331 Y + R AN I + LE+ D +LG Sbjct: 297 ESADYPEDGRYRYANGDIGEGLRDIASQLAKQTSAWLGRLEVLVDTLNDALGDKQYPIPA 356 Query: 332 ------------LDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR----HFTLALTPL 375 + E+ RL+R + + W ++ +P+ Sbjct: 357 PDVELFYQQAGSWQSRAEQLLALWDRLQREIKTGDMPLACWLRLDDSGNNVDISVNASPI 416 Query: 376 SVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-AESLLLPSPFDYSRQALL 434 A+ ++++ + + TSATL GI A + + FDY + A++ Sbjct: 417 QAAELLRDVLWGSCYASVVTSATLRALGSFQTLQRETGIPDFAHFMTVAGAFDYQQAAVI 476 Query: 435 CVLRNLPQTN-QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVL 493 V + + N R + E + G +L +S M + + + + +L Sbjct: 477 RVPADAVEGNQTDAHTRYIIDHFAEYEEPHCG-TLVLFSSRRQMEQVYDDLSSELQKNIL 535 Query: 494 LQGETSKGQLLQQFVSA----GNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPL 549 +QG+ S ++++ ++L+ +SF EGVD+ GD V+I KLPF PDDPL Sbjct: 536 IQGQLSNREMVRLHKERIDQGRTSVLMGLASFAEGVDLPGDYCRHVVIAKLPFAVPDDPL 595 Query: 550 LKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGAT 609 +A E GG+ F ++ LP A + L Q GRL+R D G + I D RL+ + YG Sbjct: 596 HEALSEWIEAGGGNSFFDISLPIASLRLVQACGRLLRTEKDTGTVTILDKRLITKRYGTQ 655 Query: 610 FLASLPPAPR 619 L LPP R Sbjct: 656 LLNGLPPFRR 665 >UniRef50_A5CX48 ATP-dependent DNA helicase DinG n=3 Tax=Gammaproteobacteria RepID=A5CX48_VESOH Length = 686 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 167/674 (24%), Positives = 279/674 (41%), Gaps = 70/674 (10%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAI-----EKGQPLVVEAGTGTGKTYAYLAPALR---- 61 L + + GF R+ Q +M +++ + L VEA TG GKT+AYL ++ Sbjct: 17 LKENMNGFITRQAQNKMIAEISKTLSGEYKNSHNILCVEAPTGIGKTFAYLLGSIHIAKA 76 Query: 62 AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG- 120 KKK+IIS+ + ALQ+QL+ +D+P + L+KGRS Y+C+ L Sbjct: 77 NKKKLIISSANVALQEQLFFKDIPQAQQYCCVDFEYTLIKGRSRYVCIRNLINICEDNKN 136 Query: 121 -----------DLPVQILSDVIL---LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 D P + L L ++S + +G+I + + W + Sbjct: 137 DNPLFESMPLFDKPPEEYPLEQLSKMLYNYSTKKWNGEIDDLIPTT-NHSIWQQIACNRF 195 Query: 167 NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDE 226 C +C YKDC K R+K ADV+V NH L LAD+ + ++ + IFDE Sbjct: 196 TCTVKNCEFYKDCAFFKTRQKITKADVIVANHDLVLADLSTGNTVLPDVSK--SIFIFDE 253 Query: 227 AHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQ----------------LQK 270 AH L A +F + S+ + K T K ++Q L + Sbjct: 254 AHHLNSKALSHFSLTTSTEFIKTSVKQTKEVSETLCKISKQNIPNINIKQIDNYITDLIQ 313 Query: 271 CADRL---AQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLD----DTLELCYDVAK 323 ++L + + EP + + L IQ F LL D L+ Sbjct: 314 LLEQLKFNENIYLFNQGVIDEPIKQISRNILTLIEIIQTKFTLLKEFWSDYLKKTVINKS 373 Query: 324 LSLGRSALLDAAFERATLYRTRLKRLKEINQPGYS---YWYECT------SRHFTLALTP 374 + + + + +I++P W + + ++ L Sbjct: 374 IHGPINNMAGQCEQHLLSIIALFSSFLQIDEPNKIPNSRWIKKSILTTSKRTNYLLNSAQ 433 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI--EQAESLLLPSPFDYSRQA 432 +++ L+ K I TSATL+ +LG+ + + L LPSPF + Q Sbjct: 434 TDISENLDHLIWSKASGAILTSATLTSLGSFERLNKQLGLLRNENQYLRLPSPFMF-NQV 492 Query: 433 LLCVLRNLPQTNQ--PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTL 490 L + + Q + +L+ + ++ +L TS+ M+ +A + Sbjct: 493 DLIIAKLKASPTQVYEHTQETTLQLLKRL--DSDEGSLVLFTSNKQMQIVANLIDKKLNC 550 Query: 491 PVLLQGETSKGQLLQQF----VSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPD 546 + +QGE K +L++ +++ SF EG+D++G+ L+ VII KL F+ P Sbjct: 551 TLFIQGEYPKKNILKKHINLRKQGKGSIIFGLDSFSEGIDLKGNNLTHVIITKLRFSVPT 610 Query: 547 DPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPY 606 P+ + + + +PF E+ LPDA + L Q GRLIR D G + I DNRL+ + Y Sbjct: 611 SPIDRTLATYLKSQNRNPFMEISLPDASLKLIQACGRLIRTETDVGKITIFDNRLISKFY 670 Query: 607 GATFLASLPPAPRT 620 G L +LP Sbjct: 671 GKLLLNALPNYNII 684 >UniRef50_D1Y8P3 DNA polymerase III, epsilon subunit n=1 Tax=Pyramidobacter piscolens W5455 RepID=D1Y8P3_9BACT Length = 646 Score = 405 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 174/651 (26%), Positives = 282/651 (43%), Gaps = 41/651 (6%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVV-EAGTGTGKTYAYLAPA 59 M D F P+G L +P F+ R QR++A + ++ + L+ EA TG GKTYA L PA Sbjct: 1 MEDFFGPEGILNARLPNFEYRRQQRELAEKIENFLQSDRRLLAAEAPTGVGKTYAMLIPA 60 Query: 60 LRA----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQ 115 +R V++ T LQ+QL +D+P + L LLKGR NY C+ + + Sbjct: 61 MRWAVANNSTVLVLTSGITLQEQLIYKDIPALLDVLGLDLPYGLLKGRGNYACIRKAREI 120 Query: 116 ALAGG-DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCP 174 G D + W T GD+S + A + S+ CLG CP Sbjct: 121 GAEGFLDFGGDKGQASRDISGWLYATETGDLSELSL-GDTHPARERIASSYLTCLGPYCP 179 Query: 175 MYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIA 234 ++ CF K + V+V N+H++ + ++ + F ++I DEAH++ D A Sbjct: 180 HHERCFYNKVMRSLSHWRVIVANYHVYFSYVLGQRKPFPAPF---GLLICDEAHKMEDAA 236 Query: 235 SQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDF------------ 282 + R L + + E + + ADR A+ D Sbjct: 237 RAVTQVGVDVRDWQRLLRRAPRLDKVEASLLRSVDCPADRFAEEVADLSRVSESVFDQLA 296 Query: 283 -RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFE---- 337 RL G+ ++ + L+ + A + L Sbjct: 297 ARLPDGKNFTAYPPELKNDTAELLVKCDRIIGHLDELQEAAAGGGRDANALQDDGRIAVW 356 Query: 338 --RATLYRTRLKRLKE-INQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIF 394 T +R L+ + N P ++YW E +L + ++ +D I Sbjct: 357 NGELTAFRDSLRWCCDTQNYPEWAYWRE----GGSLKSSCVNGSDLIPPAFDDDEIKVIA 412 Query: 395 TSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAA 454 SAT++V+ ++ + G+ E+ +L SPFD + V+ Q PG A +A Sbjct: 413 LSATMTVDRSFEYWANETGLAPDETAVLDSPFDLPSLMEIDVVDLGLQVMSPGYADAVAR 472 Query: 455 MLRPIIEANNGRCFMLCTSHAMMRDLAEQFR---ATMTLPVLLQGETSKGQLLQQFVSAG 511 + R N G +L +S ++ ++ + L +L+QG+ + +LL+ F Sbjct: 473 VCRKYARENGGATLILLSSRRLLTAVSAYLKMNAEKDRLNILVQGDLPRTELLELFKENE 532 Query: 512 NALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLP 571 ++LV +SF EG+DV G+ L+ VIID++PF P DP+ +AR +L G + F + LP Sbjct: 533 RSVLVGMASFREGIDVPGEALTQVIIDRIPFPHPGDPVGEARA---KLEGRENFVKAVLP 589 Query: 572 DAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD 622 A + L+Q GRL+R DRG +VI D R+V RP L SLP P + Sbjct: 590 GAKMQLRQAAGRLVRTGSDRGRVVILDGRIVTRPDWK-ILDSLPAVPVKKY 639 >UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=2 Tax=Bacillaceae RepID=A3I8T8_9BACI Length = 914 Score = 402 bits (1034), Expect = e-110, Method: Composition-based stats. Identities = 175/666 (26%), Positives = 285/666 (42%), Gaps = 69/666 (10%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVI-- 67 + KA+P F+ R Q +M + QA+ + + V+EA TG GKT YL PA+ + V Sbjct: 239 LMTKALPNFEERPAQFKMMDTIWQALHEQKECVIEASTGIGKTAGYLLPAIVYARTVHKK 298 Query: 68 --ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ 125 IST + LQ+QL +LP + K L N+ +LKG +Y+ L+R EQ + Sbjct: 299 IAISTYTSYLQEQLVEEELPKIEKILGTKVNICVLKGMQHYIDLDRFEQSMAYADESYDD 358 Query: 126 ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKAR 185 S ++ + W +T G +S + + +D P F +A Sbjct: 359 TFS-ILQILVWLTKTETGVLSELNVSGGGQLFLEKI-----RKIPNDKPSKGFDFYEQAL 412 Query: 186 KKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSR 245 K + AD +V NH + L+D+V + F ++ D + DEAHQ A Q S Sbjct: 413 KNSAFADCIVTNHAMVLSDLVRQTPIFTQI----DGWVIDEAHQFIQAAMQQDEIVFSYT 468 Query: 246 QLLDLAKD---------ITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNL- 295 Q + + K + + RL + E R Sbjct: 469 QWKYIFGQIGTMEDTGLYQLFCEAAKKKQRVSMQSLQRLDAHFIRLQRAFDETIQRAAQS 528 Query: 296 -------------------RELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAF 336 LA + L L+L + A+ LD Sbjct: 529 MQQQMKGKRASSKCTLFIEDVTLAKESFLQVSKLTQQWLDLATEAAQGFENNIEQLDKND 588 Query: 337 E--------RATLYRTRLKRLKE---INQPGYSYWYECTSRHF--TLAL--TPLSVADKF 381 + ++ ++ + G S W E R +L + P +V Sbjct: 589 RYILSEWHYWIREVKIKIAEWEDIFLSSHDGSSVWLEFDVRSVPGSLHVFKKPANVTPII 648 Query: 382 KELMAQ--KPGSWIFTSATLSVNDDLHHFTSRLGIEQ-AESLLLPSPFDYSRQALLCVLR 438 ++++A K S ++TS TL V + T +LGI E + L +P Y A ++ Sbjct: 649 EQVLAPLRKQASIVWTSGTLMVPGNERFVTRQLGISDSVEVIKLQAPPAYYAGAKAFIVT 708 Query: 439 NLPQ---TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPV 492 ++P +Q +A + + GRCF+L T+ M+R E + + + Sbjct: 709 DMPDIQHVSQEEYIEAVAHAITRTVRMTEGRCFVLFTAQDMLRKTVELIQDSELLDDYML 768 Query: 493 LLQGE--TSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL 550 QG S+ ++L+ F +A+L T+SFWEGVDV GD L+ VI+ +LPF+SP++P+ Sbjct: 769 FAQGVTGGSRMRILKSFQKFSHAVLFGTNSFWEGVDVPGDALASVIVVRLPFSSPEEPVF 828 Query: 551 KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATF 610 KAR + +G + F E+ LP+A++ KQG GRLIR + D+G ++ D R+ + YG F Sbjct: 829 KARAKHLTAQGRNSFTELSLPEAIMRFKQGFGRLIRSSQDKGAFIVLDRRITSKSYGKEF 888 Query: 611 LASLPP 616 + +LPP Sbjct: 889 IKALPP 894 >UniRef50_C1SGW8 DNA helicase, Rad3 n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SGW8_9BACT Length = 591 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 178/641 (27%), Positives = 277/641 (43%), Gaps = 58/641 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 M F+ G L+ +P ++ R+ Q A + +++ QP VVEA TG+GKT+AYL PA Sbjct: 1 MDKYFSKVGSLSDILPRYRQRDAQLDAANFIFDSMKTYQPAVVEAPTGSGKTFAYLIPAF 60 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 ++ IIST +K L Q+ +D+ V++ VA+LKGR NY C R + Sbjct: 61 ELGRRTIISTKTKQLMSQIAGKDIEAVNRIFGDDRFVAVLKGRRNYFCHLRFFRFVYPNQ 120 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 + W VD +I +++ + C S C Y C Sbjct: 121 GR-------FERVVEWYGSVVDQEIIDVPIGVFSPHEIEHISTDSWQCTASKCEFYDICS 173 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVK-ESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 +A+++A AD+V+ NH+L ++D +K E+ + AD +I DEAH +PDI ++ G Sbjct: 174 FYRAKEQANSADIVITNHYLLMSDFALKSENEHASIFDFADHIIMDEAHSIPDIFPRFAG 233 Query: 240 QSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELL 299 LS R L L + A+ D ++++ A L+ + + + +RG L + Sbjct: 234 TELSLRSFLKLMNENRQAF-----DPREIELAAGMLSGLLETIKTRTYTNDFRGALLPYI 288 Query: 300 ANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRL--KRLKEINQPGY 357 A+ + FE RL K + + Sbjct: 289 EFVN-------------------------KAIGEKDFEEMKNVHKRLVEKAVSVLGDSEG 323 Query: 358 SYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA 417 + E L PL+ ADK +E M S +F SATLS + +F S G E+ Sbjct: 324 VRFVEQERGDILLQYIPLNAADKLREGMKNACLSPVFVSATLSGKGNFSYFLSETGYEEE 383 Query: 418 ES--LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 E + L FD ++Q L V +LA G ++C S Sbjct: 384 EIGKMSLEPVFDMAQQGRLLVQD-----CDEAFYEELA-------LKAKGSVLIICNSVG 431 Query: 476 MMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLV 535 M L + + V Q + ++ + + V + F EG+D +S V Sbjct: 432 RMLKLTKMLKELCPGRVYSQRDID----IKDTEGLKDTIFVGCAVFREGMDFAHTGISYV 487 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLV 595 ++DKLPF PDD +LK + E R +G +PF + LP AVI +Q VGRL+R DD+GV V Sbjct: 488 VLDKLPFEYPDDLVLKEQAESVRKKGQEPFMDYFLPRAVIYYRQAVGRLLRHEDDKGVWV 547 Query: 596 ICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR 636 + D R+ + YG F L PR + AV FL + + Sbjct: 548 VLDRRIDTKNYGKYFATVLKDVPRINTLDEAVAFLEVEDAE 588 >UniRef50_Q1EM22 ATP-dependent helicase DinG n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM22_9BACT Length = 850 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 158/678 (23%), Positives = 287/678 (42%), Gaps = 61/678 (8%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----A 59 F+ G L ++ G++ R+ Q A+ + ++IE+ L++E GTGTGK+ AYLAP Sbjct: 160 VFSEGGLLQDSMKGYEFRQEQFMTALEIAESIERDSNLMIEVGTGTGKSIAYLAPVAYAC 219 Query: 60 LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYT-GNVALLKGRSNYLCLERLEQ--QA 116 + + ++ST ++ LQDQL+ +D+ + V+++KGR YLC +L + Sbjct: 220 ISTMNQAVVSTRTRILQDQLFKKDVEILKTFPNLDDLRVSVMKGRERYLCARKLFEVVNL 279 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMY 176 L ++ ++ + WS T +GD+ + +++ +C CP + Sbjct: 280 ALNKMLDEEMSKELSGILIWSMITGEGDLDPLP---IKEEMRRMISGNRFDCTRRLCPFF 336 Query: 177 KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGF--------GELIPEADVMIFDEAH 228 + C R+ A +D+V+ NH ++ ++ S G L+P ++ DEAH Sbjct: 337 EICPYYVQRENAKSSDIVITNHSFLFSEANIRLSDGDAEEREDIGTLLPRFKYLVVDEAH 396 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELK------DTQQLQKCADRLAQSAQDF 282 +L +Q +L + + R D L+K +L ++ + Sbjct: 397 ELEASLTQAMSYRFEPYELAGTVRRLIKTVRDSFGFLKRHFDEGFLRKLWAKLKEATANL 456 Query: 283 RLQLGEPGY-----RGNLRELLANPQIQRAFLLLDDTLELCY--------------DVAK 323 Q E R +++ LL + DV Sbjct: 457 DKQSTELVRVTGSPESGSRITFTGKELEVMIPLLTKISDTLQTHVYIGTQTMQMLDDVED 516 Query: 324 LSLGRSALLDAAFERATLYRTRLKRLK--EINQPGYSYWY---ECTSRHFTLALTPLSVA 378 + L T R +K++ +Q + E + ++ +P+ Sbjct: 517 RNEKIDGLEAEVSRILTETREWMKQIAGITSSQESRVIYVNRLERRPDNLSIISSPVE-N 575 Query: 379 DKFKELMAQKPGSWIFTSATLSV----NDDLHHFTSRLGIE-QAESLLLPSPFDYSRQAL 433 D + IF SATL V +D ++ LG E++ L + FDY++Q Sbjct: 576 DTLMASIFPDVSVKIFISATLWVYSRGSDGFNYARRILGTSSNNEAVRLGTSFDYTQQLK 635 Query: 434 LCVLRNLPQ--TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT-L 490 V +LP N + + + G +L TS+ M+ + + + Sbjct: 636 FFVPVDLPDYFPNSLTYLESASDITLNALNIVGGGSMVLFTSYEDMKWTLSRISGRLGDM 695 Query: 491 PVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPL 549 + +Q E S +L V++ +++ +FWEGVD+ G+ L L+I+ KLPF PD+PL Sbjct: 696 SIHIQDREDSPTTILADHVNSEKSVIFGARAFWEGVDLPGEQLRLLIVYKLPFERPDEPL 755 Query: 550 LKARMEDC-RLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV--MRPY 606 ++AR++ + + ++ P + +QG+GRLIR +D GV+++ D R+V R Y Sbjct: 756 IEARIKHYGKRSFVEGMNKYYYPKMITAFRQGLGRLIRTRNDHGVVIVIDKRIVDPNRVY 815 Query: 607 GATFLASLPPAPRTRDIA 624 LASLP + IA Sbjct: 816 SKKLLASLPAGTNVQAIA 833 >UniRef50_C8WPW0 DNA polymerase III, epsilon subunit n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WPW0_EGGLE Length = 966 Score = 394 bits (1012), Expect = e-108, Method: Composition-based stats. Identities = 187/696 (26%), Positives = 282/696 (40%), Gaps = 92/696 (13%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + F+ G + F+PR Q MA AV +A + L+VEAGTG GK+ AYL PA Sbjct: 260 IVQAFSETGLVGSLYEEFEPRIEQVAMAEAVRKAFSSSENLLVEAGTGVGKSMAYLVPAA 319 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKY------TGNVALLKGRSNYLCLE 110 V ++T + L DQL +LP + KAL+ + A LKG S+Y CL Sbjct: 320 LTARANNIAVGVATKTNTLLDQLVYHELPALEKALRLADPDRPSLTYAPLKGFSHYPCLR 379 Query: 111 RLEQQALAG------GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL--VT 162 ++ G G+ + L S+ QT D+ + D + P +T Sbjct: 380 KIGHIVEEGAQTKLFGNKEQTQAPSLAALLSFIEQTEYDDMDSLK---IDYRVLPRRLIT 436 Query: 163 STNDNCLGSDCPMYK-DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADV 221 +T ++CL CP + CFV +R++A AD+VV NH L D+V G L+P Sbjct: 437 TTANDCLRRKCPYFGTSCFVHGSRRRAEAADIVVTNHSLLFCDLVAD----GGLLPPIRY 492 Query: 222 MIFDEAHQLPDIASQYFGQSLSSRQLLDLAKD----------------------ITIAYR 259 + DEAH A + F SLS+ + LA + Sbjct: 493 WVVDEAHGAEAEARRAFSLSLSAEDITRLANRVGADEASRNVFVRAERRVVVPGMEEGSS 552 Query: 260 TELKDTQQLQKCADRLAQSAQDFRLQLGEPGYR-----------------GNLRELLANP 302 T + + A +A++F L + + ++R Sbjct: 553 LFYALTGKARSAGKAYADAAREFSAHLKDLLFFDQNKKGKGYEIVELWINSDVRSSATFA 612 Query: 303 QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW-- 360 Q++ + + E V + +G L+ A E + LK+ Sbjct: 613 QVESYGRAMTEAAEKLVRVCQELVGYLEELEGAAEIQREIASTAMELKDQMNAADIILDR 672 Query: 361 ------------YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHF 408 + L ++V + E + ++ S +F SATL+V+D F Sbjct: 673 APETYAYAATLSRKKDRVAEKLEALLINVGEAMNETLFERTHSTVFASATLAVDDKFDAF 732 Query: 409 TSRLGIEQAES-----LLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEAN 463 S LG+ +E L S +D+ + V ++P+ N+ L +L + A Sbjct: 733 ESALGLNASEHSTCQMCKLDSSYDFDAHMTVYVASDMPEPNEAAYLAALQRLLVDVHRAQ 792 Query: 464 NGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQ-GETSKGQLLQQFVSAGNALLVATS 519 NG L T+ M ++ + + L V+ Q S L F++ + L A Sbjct: 793 NGSMLTLFTNRREMERCFDEVQPQLKVDDLRVVCQKWGVSVKGLRDDFLADEHLSLFALK 852 Query: 520 SFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQ 579 SFWEG D G TL V+I KLPF P DPL R + LP AV+ KQ Sbjct: 853 SFWEGFDAPGATLKGVVIPKLPFAKPTDPLSCERAARDDQ----AWRRYVLPAAVLETKQ 908 Query: 580 GVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 GRLIR ADD GVL++ D RL+ + YG FL SLP Sbjct: 909 AAGRLIRKADDTGVLILADRRLLTKSYGKAFLNSLP 944 >UniRef50_C7N494 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Slackia heliotrinireducens DSM 20476 RepID=C7N494_SLAHD Length = 986 Score = 394 bits (1011), Expect = e-108, Method: Composition-based stats. Identities = 189/716 (26%), Positives = 283/716 (39%), Gaps = 89/716 (12%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + F+ DG + ++PR Q+ MA V A LVVEAGTG GK+ AYL P Sbjct: 278 IDQAFSVDGLIGSMYENYEPRIEQKIMAEEVLSAFSTSNNLVVEAGTGVGKSMAYLVPAA 337 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALK----YTGNVALLKGRSNYLCLERL 112 ALR + I+T + AL DQL ++LP ++KAL+ LKG S+Y CL R+ Sbjct: 338 VTALRNNIPIGIATKTNALLDQLVYKELPMLAKALEAEGAGELKHVALKGFSHYPCLRRI 397 Query: 113 EQQALAGGDLPVQILSD------VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 G + + + S+ QT DI + +T+++ Sbjct: 398 SHVVSDGAHMVEIAGQQYSQATSIAAILSYIEQTEYDDIDALKLDYRTLPRYA-ITTSSR 456 Query: 167 NCLGSDCPMYK-DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFD 225 CL CP + CFV AR++A A VVV NH LF D+ G L+P A I D Sbjct: 457 ECLRKRCPFFGTYCFVHGARRQAEHAHVVVTNHALFFRDLAAD----GNLLPHAKFWIVD 512 Query: 226 EAHQLPDIASQYFGQSLSSRQLLDLAKD-------------------------------I 254 EAH A + +L ++++L LA Sbjct: 513 EAHGAEAEARKALAINLDAQEMLRLAGRLTTEDAKRNAFVRLERRKPVDSGTQPEASTLF 572 Query: 255 TIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRG----------NLRELLANPQI 304 K + + A+ LA+ +D + + ++R + Sbjct: 573 YSLTEKAKKRGRDFGEKAEILAKRMKDLVKVAPKENNKNYDTFEVWINDDIRLTPEFKGL 632 Query: 305 QRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRL----------KRLKEINQ 354 Q D E + +D E + + + + Sbjct: 633 QGYGRDFVDAAEKLISSGNEIIAFLDDMDGVAENQREIASIVIDAKNMLQACETILGPAD 692 Query: 355 PGYSYWYECTSR----HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTS 410 Y Y + +L + + + E + ++ S ++ SAT+S++DD F Sbjct: 693 LRYVYSARVCRKPERVAESLEAQIVDIGQELDETLYERTQSVVYASATISISDDFQAFNQ 752 Query: 411 RLGIEQAESLL-----LPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNG 465 LG+ +E+ L S +DY+ + VL ++P+ N +L ML A G Sbjct: 753 ALGLNASEASRSKECLLGSSYDYNHHMRVFVLNDMPEPNNARYMARLQDMLLRAHLAQQG 812 Query: 466 RCFMLCTSHAMMRDLAEQFRATM---TLPVLLQ-GETSKGQLLQQFVSAGNALLVATSSF 521 L T+ M + + L ++ Q S L F++ + L A SF Sbjct: 813 SMLTLFTNRREMEQCFDAVNPELKANDLRLVCQKWGVSVKGLRDDFLADKHLSLFALKSF 872 Query: 522 WEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGV 581 WEG D G TL VII KLPF P DPL R R + LP AVI +KQ Sbjct: 873 WEGFDAPGATLRGVIIPKLPFAKPSDPLSCER----SARDRSAWAHYVLPKAVIEVKQAA 928 Query: 582 GRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTR-DIARAVRFLAIPSSR 636 GRLIR A D GVL++ D RL+ + YG +FL SLP T I + L S++ Sbjct: 929 GRLIRTATDEGVLILADRRLLTKGYGKSFLNSLPSTNITMCSIDELIEHLLDESTQ 984 >UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38 Tax=Enterococcus RepID=C2JLR4_ENTFA Length = 929 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 157/672 (23%), Positives = 269/672 (40%), Gaps = 64/672 (9%) Query: 18 FKPREPQRQMAVAVTQAIEKG--QPLVVEAGTGTGKTYAYLAP---ALRAKKKVIISTGS 72 F R Q +M V +G + L +EA TGTGKT YL P +K VIIST S Sbjct: 261 FAYRAEQSRMMNLVYDHFTEGTTKDLFIEAATGTGKTLGYLLPMSYLATPEKPVIISTVS 320 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 LQ+QL +DLP ++ + ++K +YL L+ + L Q + Sbjct: 321 IVLQNQLVEKDLPLANQICQGKLRGIVIKSHRHYLDLQCF-KATLNQPTPQKQYALYQMG 379 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 + W +T GD+ + W VT + L +Y+ F+ KK ++ Sbjct: 380 VLVWLLETETGDLDELQLTNLNHLFWKEVTHRGLDFLSKKDELYEVDFLRHLYKKVAQSN 439 Query: 193 VVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSR------- 245 V++VNH + + K+ L+PE+ +I DEAH LPDIAS+ + ++S Sbjct: 440 VLIVNHAFLAQESLRKQ----PLLPESPWLIIDEAHHLPDIASRMASERVNSVILKKQVT 495 Query: 246 ----------QLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNL 295 L + + + R Q L D + + R + Sbjct: 496 HFIEKEQLFVALQQIFQQFSEEQRFVKIYQQGLLDFVDEWQDFLFELHRLFSKTQKRIDH 555 Query: 296 RELLANPQIQRAFLLLDDTLELCYDVA---------KLSLGRSALLD------------- 333 +ELL + + + KL + L+ Sbjct: 556 QELLLTKERIDYLSAAGEKHSQTLQLLLQELLTIQSKLQQTIMSQLETFSLADRIVFVRL 615 Query: 334 -AAFERATLYRTRLKRLKEINQPGYSY-WYECTSRHFTLALTPLSVADKFKELMAQKPGS 391 F+ + +P + + H + + L + + + Sbjct: 616 FQFFDEIERIHHCFSIYLDDWRPRWVKEYLPQNEDHGLIEIHDLEASLLPETKWYPRYER 675 Query: 392 WIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLP---QTNQPGS 448 I+TS TL ++ + RLG+ + LP+P++Y+ A + V + Sbjct: 676 IIYTSGTLKFGNNKKYLPQRLGLTEVTFKTLPTPYNYAENARVYVPEEAVAIQNASSYEM 735 Query: 449 ARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQG-ETSKGQLL 504 + ++ + ++ +L TSH ++ + Q + + VL QG S+ ++L Sbjct: 736 GQYISDTIEKLMAQEERSMLVLFTSHELLSTVYHQVQPRLLEKGQEVLAQGISGSREKIL 795 Query: 505 QQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDP 564 ++F + +L+ SFWEGVD+ G L L+I+ +LPF +P PL++A+ G P Sbjct: 796 KRFSNGKPNVLLGADSFWEGVDLPGTALQLLIVTRLPFENPKRPLVQAKYAYLEAEGIQP 855 Query: 565 FDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD-- 622 F + +P A + L+Q +GRLIR +DRG L+I D RLV YG + + P ++ Sbjct: 856 FAQEAVPKAALRLRQALGRLIRSEEDRGALLILDRRLVTAKYGKRLIKAFPKGLSVKEAP 915 Query: 623 ----IARAVRFL 630 + FL Sbjct: 916 MPEILEELKEFL 927 >UniRef50_D0WHF7 Putative ATP-dependent helicase DinG n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WHF7_9ACTN Length = 1045 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 191/700 (27%), Positives = 280/700 (40%), Gaps = 91/700 (13%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP-- 58 + F G + + G++PR Q+ MA V +A LVVEAGTG GK+ AYL P Sbjct: 336 LDAMFDARGVVGEMYAGYEPRMEQKIMASEVLRAFSTSTNLVVEAGTGVGKSMAYLLPSA 395 Query: 59 --ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALK----YTGNVALLKGRSNYLCLERL 112 ALR V ++T + AL DQ+ ++LP + AL LKG +Y CL R+ Sbjct: 396 MAALRNGIPVGVATKTNALLDQIVYKELPLLHDALAAKGFGDLQYVALKGFRHYPCLLRI 455 Query: 113 EQQALAG------GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL--VTST 164 + G + + + S+ QT DI D + P VT+ Sbjct: 456 DSVMRDGVHDVNVSGRDISQAPSLAGMLSFIEQTEYDDIDGLK---IDYRVLPRYAVTTE 512 Query: 165 NDNCLGSDCPMYK-DCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMI 223 + +CL CP Y CFV +RKKA + +VV NH LF D S G L+P+A + Sbjct: 513 SRDCLRRKCPFYGTYCFVHGSRKKAERSHIVVTNHSLFFRDA----SSDGSLLPKAPFWV 568 Query: 224 FDEAHQLPDIASQYFGQSLSSRQLLDLAK------------------------------- 252 DEAH A + SL + ++L L++ Sbjct: 569 VDEAHGAEAEARRALSVSLDASEMLRLSRRLASDEGARNPFVRLERRAPECEAVLPEAST 628 Query: 253 --------------DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLREL 298 D +A + + L CA + + F L + + + Sbjct: 629 LFFGLTEKAKKRGKDFAVAAASFAHGMKDLSACATQQDRRYDVFDLWINDDVRACDAFVE 688 Query: 299 LANP--QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKR---LKEIN 353 L Q + A L + + + G + A ++ L+ + E Sbjct: 689 LVKKASQFREAAERLASSGSELVAFLEETDGLGDVQRDIATIAIDVKSMLQACEAIMETP 748 Query: 354 QPGYSYWYECTSR----HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFT 409 Y Y + + L + V + + + ++ S ++ SATLSV F Sbjct: 749 DRNYVYSAHVSRKPEHVAERLEAMLIDVGQELDQTLYERTRSIVYASATLSVGHGFSSFN 808 Query: 410 SRLGIE-----QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANN 464 +G+ + LL S +D+ + VL ++P P L +L A Sbjct: 809 RAMGLGGDGPARVNECLLGSSYDFENHMRVFVLNDIPDPRDPAYLPILEGLLARAHIAQG 868 Query: 465 GRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQ-GETSKGQLLQQFVSAGNALLVATSS 520 G L T+ M + M L V+ Q S L +F++ L A S Sbjct: 869 GSMLTLFTNRREMETCFDDINPRMKEEGLRVVCQKWGVSTKGLRDEFIANETLSLFALKS 928 Query: 521 FWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQG 580 FWEG D G TL VII +LPF+SP+DPL K R R + + LP AVI LKQ Sbjct: 929 FWEGFDAPGSTLKGVIIPRLPFSSPNDPLSKERAA----REKGAWSKYCLPAAVIDLKQA 984 Query: 581 VGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 GRLIR + D G+L++ D RLV YG TFL SLP T Sbjct: 985 AGRLIRSSTDTGILILADRRLVTMGYGRTFLRSLPSQNIT 1024 >UniRef50_C8RVT0 ATP-dependent helicase DinG (Fragment) n=2 Tax=Corynebacterium jeikeium RepID=C8RVT0_CORJE Length = 609 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 186/607 (30%), Positives = 267/607 (43%), Gaps = 60/607 (9%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKKKV 66 LA G PR Q++MA AV +AI+K L V+AGTGTGK+ AYL P A+ + V Sbjct: 11 LAVNDLGGAPRPGQQKMAKAVAEAIDKEHHLAVQAGTGTGKSLAYLIPSIAAAMDSDYPV 70 Query: 67 IISTGSKALQDQLYSRDLPTVSKAL----KYTGNVALLKGRSNYLCLERLEQQALAGGDL 122 I+ST + ALQ QL RDLP ++KAL A+ KGR NY+CL +++ G Sbjct: 71 IVSTATIALQRQLVERDLPRLAKALEPELPRPLEFAIQKGRGNYVCLNKVQNAQTESGVE 130 Query: 123 PVQIL-----------SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLG- 170 + + V L W+ +T DGD D +AW V+ ++ CLG Sbjct: 131 EAEESLLDPSQLSATGAQVARLHEWAGETEDGDRDNLPQGVSD-RAWRQVSVSSRECLGA 189 Query: 171 SDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQL 230 + CP + CF +AR A DADVVV NH L D +V ++PE D +I DEAH+L Sbjct: 190 TRCPFGEQCFAERARAHAADADVVVTNHALLAIDALVD----APVLPEHDTVIVDEAHEL 245 Query: 231 PDIASQYFGQSLSSRQLLDLAKDITI-AYRTELKDTQQLQKCADRLAQSAQDFRLQLGEP 289 D + LS + LAK A +L + DR ++ + Sbjct: 246 EDRITSVATAELSPTAIAVLAKRAAKLAVSGADAAGDELAEAGDRWTEALKAEAAASRNN 305 Query: 290 GYRGNLRELL---ANPQIQRAFLLLDDTL-------------------ELCYDVAKLSLG 327 G E +Q L D + + + + Sbjct: 306 DRFGTGIEGRWTGVPEALQVPLAALRDAAWKTNRQVSGIPASEFANDSKKVAERLAVIVA 365 Query: 328 RSALLDAAFERATLYRTRLKRLKEINQPG----YSYWYECTSR----HFTLALTPLSVAD 379 L D +R+ + WY S + + PLSVAD Sbjct: 366 TEELNDTCVRILN--ASRVGEGTSADDEDLLGEDVIWYTADSGPRAPKHVVRVAPLSVAD 423 Query: 380 KFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE-SLLLPSPFDYSRQALLCVLR 438 ++ + + + I TSATL++ S G+ ++ +L +PFD +L V R Sbjct: 424 LLRQRLFGR-NTVILTSATLALGGKFTSMLSCWGLPKSTPTLDAGTPFDARTHGILYVAR 482 Query: 439 NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGET 498 +LP + ++ +I A GR L +S D+AEQ R + +LLQGE Sbjct: 483 HLPPPGRDRASDASVDETARLINAAGGRTLGLFSSRRAAEDMAEQLRTVVPYEILLQGED 542 Query: 499 SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCR 558 S L+++F +A L T W+GVDV G +LSLVIID++PF PDDPL +AR E Sbjct: 543 SMSTLVEKFRKNQSACLFGTLGLWQGVDVPGKSLSLVIIDRIPFPRPDDPLQQARQEAAD 602 Query: 559 LRGGDPF 565 RGG F Sbjct: 603 QRGGSGF 609 >UniRef50_A1WDD4 Helicase c2 n=11 Tax=Comamonadaceae RepID=A1WDD4_ACISJ Length = 758 Score = 385 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 176/709 (24%), Positives = 272/709 (38%), Gaps = 108/709 (15%) Query: 17 GFKPREPQRQMAVAVT--------------QAIEKGQPLVVEAGTGTGKTYAYLAPALRA 62 GF+ RE QR+MA V A+ + VV+AGTG GK+ AY PA+ Sbjct: 52 GFRVREGQRRMAEQVAQTFSQAQLGKLEDDDALPQRAIAVVQAGTGVGKSLAYSVPAIAM 111 Query: 63 ----KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA-- 116 +V+IST + ALQ+QL +DLP ++ ++ AL KGR Y+C +LE+ A Sbjct: 112 ALARGTRVLISTATVALQEQLVHKDLPALAARMEQPFQFALAKGRGRYVCKLKLERLAGG 171 Query: 117 ---------------------------LAGGDLPVQILSDVILLRSWSNQTVDGDISTCV 149 + ++ + + + DGD T Sbjct: 172 GAAGPGGDGDLPDDDLFADEEAEQRGKRPRHESEARMKFYASMADALATSEWDGDRDTL- 230 Query: 150 SVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKE 209 + + +AW V + +C G CP++ C + RK+ + A V+V NH L L+ + + Sbjct: 231 ATPPEPEAWSPVAAEASSCTGKHCPVFNQCTYYERRKQLVAAQVIVANHDLLLSSLGARL 290 Query: 210 SGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYR----TELKDT 265 + +++ DEAH LP A F +L + + + A R E+++ Sbjct: 291 LPE----LDNCLLVIDEAHHLPATALDQFACEADLSRLTWIDRLASRALRIGQLVEVEEI 346 Query: 266 QQLQKCADRLAQSAQD----------FRLQLGEPGYR--------------GNLRELLAN 301 + A RL + QD +L+ PG R G L E L Sbjct: 347 ADIPNHAARLRAALQDAARLVMDVYGEQLRAPVPGRRQFASSLPTRARVAGGVLPEALVE 406 Query: 302 PQIQRA------FLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQ- 354 P Q A L + + + L + + + RL+ + Q Sbjct: 407 PFSQAAHHAEGFLNALRAISKALRSEMRDKPDEARRLSQLYAQIGVLAPRLEAVHAAAQL 466 Query: 355 -------------PGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSV 401 ++ E +P+ + + + + TSATL+ Sbjct: 467 LLQDAPEGAVPAAKWFTLEVEGDFIVVRAHASPVLPGNTLRNHLWSAVRGAVLTSATLTS 526 Query: 402 NDDLHHFTSRLGI---EQAESLLLPSPFDYSRQALLCVLRNLPQTNQ-PGSARQLAAMLR 457 F G+ E +L +PSPFDY+ Q L + ++ L Sbjct: 527 CGQFDFFLRESGLFGDEAVTTLAVPSPFDYALQGTLVATETRAEPRDAQAFTAEMVDALL 586 Query: 458 PIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSA----GNA 513 + +L TS MR + M VL+Q + QLL + + Sbjct: 587 SDLALVEAGALVLFTSREQMRQAVDMLPTAMRSAVLVQNTLPRPQLLARHRERVAEGQPS 646 Query: 514 LLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDA 573 ++ SF EG+D+ G + I KLPF PDDP+ +AR E R G DPF E+ +P Sbjct: 647 IIFGMQSFGEGLDLPGRLCESLFITKLPFAPPDDPVGEARAEWLRGAGRDPFSELVVPAT 706 Query: 574 VITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD 622 I L Q VGR IR +DR + D RLV YG L LPP R Sbjct: 707 AIRLAQWVGRAIRTEEDRAHVYCYDKRLVRTGYGQRLLQGLPPFALARR 755 >UniRef50_B8I7B6 DEAD_2 domain protein n=3 Tax=Clostridium RepID=B8I7B6_CLOCE Length = 790 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 118/638 (18%), Positives = 238/638 (37%), Gaps = 62/638 (9%) Query: 12 AKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTG 71 + P R QR++AVAV + I +G+ L +A TG GKT + L PA+ Sbjct: 184 SLQFPFKSYRRGQRELAVAVYKTIMQGKKLFAQAPTGIGKTISTLFPAV----------- 232 Query: 72 SKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVI 131 KAL +Q S+ +K + ++ + L + + + Sbjct: 233 -KALGEQHISKIFYLTAKTITRQVA---------EEAFSKMRECGLVFRTITLTAKDKIC 282 Query: 132 LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTST---NDNCLGSDCPMYKDCFVVKARKKA 188 + S + + ++ ++ ++ + + +K C + + Sbjct: 283 FNKGGSCNPDFCEYAKGHYNRVNNAMEDVLNTSQNLSREVIEEYALKHKVCPFEFSLDLS 342 Query: 189 MDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL 248 + AD +V +++ V + F + ++ DEAH L D A + F + L Sbjct: 343 LWADCIVCDYNYAFDPRVYLKRFFLNNTGDYAFLV-DEAHNLVDRAREMFSAQIHKSAYL 401 Query: 249 DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF 308 + K + ++ K +++ R Q E G+ +++ +++ + Sbjct: 402 EAKKLMKS-------KVPKVAKILNKINSYMVTLRKQCAEEGF------IISKTELKDLY 448 Query: 309 LLLDDTLELCYD-VAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH 367 LL++ + + + K + E R+ + Y + E S Sbjct: 449 RLLNNFISESEEWILKNQNNNIEGFEQLLE-VYFDSIAFTRMADFYDERYVTFIETKSMD 507 Query: 368 FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES-LLLPSPF 426 + L L + + + ++ + +F SATL+ + +F LG ++ + + L SPF Sbjct: 508 VRVKLFCLDPSYLLSDAV-KRGKTAVFFSATLTPVN---YFMDILGGDKEDYNINLASPF 563 Query: 427 DYSRQALLCVLRNLPQT--NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF 484 D L V N+ ++ S ++ ++ I G + S+ M ++ +F Sbjct: 564 DKDNLC-LIVNDNISTRYKSRDKSYDKIVDIIWSSISKRTGNYVVFFPSYKYMNEVYTRF 622 Query: 485 RATMTL-PVLLQG----ETSKGQLLQQFVSAGNALLVA----TSSFWEGVDVRGDTLSLV 535 ++Q E + L +F S LV+ F EG+D++GD L Sbjct: 623 TEQYPETNTIIQETSMTEEERESFLNRFQSGTEKSLVSFGVLGGIFSEGIDLKGDRLIGA 682 Query: 536 IIDK--LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGV 593 II LP SP+ ++ M+ + + F+ + + + Q GR+IR D G Sbjct: 683 IIVGVGLPQVSPEQNII---MDYFKNKNRMGFENAYMYPGMNKVLQAAGRVIRSEHDVGT 739 Query: 594 LVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLA 631 +++ D R Y F R +D + + L Sbjct: 740 VILLDERFSNGNYRRLFPKHWEHVLRVQDTGQLEKRLE 777 >UniRef50_Q1D091 Exonuclease n=2 Tax=Cystobacterineae RepID=Q1D091_MYXXD Length = 988 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 180/707 (25%), Positives = 281/707 (39%), Gaps = 84/707 (11%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 ++ G L +A GF R Q +A AV +A+ G L +EAGTGTGK+ AYLAPA Sbjct: 275 VSALLGVGGALEQAGEGFMSRAAQLDVAQAVARALSDGGQLAMEAGTGTGKSLAYLAPAA 334 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 R +KV ++ +K LQDQL +DLP + +A K ALLKG++NYLC R + Sbjct: 335 LFAARNGRKVGVAPHTKTLQDQLLEKDLPRLHRATKGAFGYALLKGQTNYLCRRRALEAT 394 Query: 117 LAGGDLPVQILSDVILLRSWSNQTVDGDISTC-VSVAEDSQAW----PLVTSTNDNCLGS 171 + + LR++ ++ +GD+ E P V S LG Sbjct: 395 RVEPGMGHSARAPRAYLRAYLRRSGEGDLDRLSHWFRERFPVLMALVPAVRSEASTTLGE 454 Query: 172 DCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLP 231 CP + CF A +A +ADV+++N L A P+ D ++ DEAH++ Sbjct: 455 KCPHFHRCFYHSAVAQAREADVLIINQSLAFAWPARY--------PKLDHLVLDEAHEVE 506 Query: 232 DIASQYFGQSLSSRQLLDLA-----KDITIAYRTELKD-------------TQQLQKCAD 273 D+A+ LS L L +D EL+ +++ Sbjct: 507 DVATTALTLELSDLAFLRLIERLHGRDGRRGLFAELRKALSASRRTETRSLMGEVEDGLR 566 Query: 274 RLAQSAQDFRLQL---------------------GEPGYRGNLRELLANPQIQRAFLLLD 312 RL A+D ++ E +R L A ++ + Sbjct: 567 RLLDDARDLGARVTELCEPTATAVGEDPDEGAYSPELRITATVRTLPAWEPVREGLEGVR 626 Query: 313 DTLELCY------------DVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 L+ + ++A L A L PG Y Sbjct: 627 GALQALHVLLSVRVLAALPELAARQPALERELSGATTELGELAVLAGELSGEAAPGRCYA 686 Query: 361 Y--ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE--- 415 E + ++L+ P+ V+ + A+ + + SATL D RLG++ Sbjct: 687 ATAEPKRQRWSLSAQPVDVSAYVSKDFAESKRTLVLASATLGTGDGFPFVLRRLGLDGRG 746 Query: 416 ---QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCT 472 + +PF QAL+ ++ + P+ ++ + + + + GR L Sbjct: 747 GRPAPRLVRAATPFKLHEQALVVLVTDAPRAHEEAFVEWASLRISGLAQTMGGRVLGLFA 806 Query: 473 SHAMMRDLAEQFRATM---TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRG 529 S M + R + + VL Q L + +L+ T SFW+GVD+ G Sbjct: 807 STRRMERVGTSVRGRLDPLGIEVLRQSRGHSRSLAARQEKDTGTVLLGTKSFWQGVDIPG 866 Query: 530 DTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGD--PFDEVQLPDAVITLKQGVGRLIRD 587 + V IDKLP PL+ AR E GG+ F +LP A++ L+QGVGRLIR Sbjct: 867 RGVGCVFIDKLPLEPAMRPLVAAREEPLSRSGGEYMGFLHYRLPRALLQLRQGVGRLIRA 926 Query: 588 ADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPS 634 DRGV++I D Y + +L R + A L I + Sbjct: 927 TTDRGVVIISDP--GHPSYRGHLMNALEGY-RVEALPWAQARLRIHA 970 >UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C2ES78_9LACO Length = 960 Score = 380 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 167/685 (24%), Positives = 286/685 (41%), Gaps = 78/685 (11%) Query: 18 FKPREPQRQMAVAVTQAI--EKGQPLVVEAGTGTGKTYAYLAP---ALRAKKKVIISTGS 72 + R Q +M ++ ++ + ++VEAGTGTGKT YL P A KK++IST + Sbjct: 273 LEFRPTQSKMMNSIYNNYTHDEPKSMIVEAGTGTGKTLGYLLPLAYAAYPDKKIVISTAT 332 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 LQ Q+ R + ++ L + N ++KG S+YL L + D L Sbjct: 333 NLLQQQIAQRTMKQLNHLLPFELNGVVIKGNSHYLDLAKFVHSLSIVEDSDYIQLI-KAK 391 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 + W +T GD+ A+ S + + L D Y D F+++ +K+ A+ Sbjct: 392 ILVWLLKTTSGDLDELNLNAQRSPYFAEIRHQGVKTLREDNEFYNDDFLIRRQKQLHTAN 451 Query: 193 VVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQ------ 246 V++ NH +A +E G G P ++ DEA L + + Q+L + Sbjct: 452 VIITNHAYLVAH--AQELGDGTRRP---YLVVDEAQHLSESILRRSRQTLDFQSIRTAIH 506 Query: 247 -LLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQ 305 L +L D + + L K L + + + + R+ + N Q Sbjct: 507 VLENLVSDNQERNLANIFEEHALGKYNVELLRDDLRSLSEATDAFQQALYRQFMLNVQGN 566 Query: 306 RAFLLLDDTLE--LCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGY------ 357 + L++ L+ + + S L+ A + L+ L E + Sbjct: 567 NSNELIEQPLDNQQLFSLLTPSNKPIMQLEQALASVQFHFMALRHLFEQQADRWLFSDRY 626 Query: 358 ---------------------------------SYWYEC----TSRHFTLALTPLSVADK 380 ++W L+ L+V Sbjct: 627 LMSQFQSQWMVLADADNKLHQFIETLEERGEAAAFWLTVQQSAEHSSMRLSGGLLAVNHF 686 Query: 381 FKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL--LLPSPFDYSRQALLCVLR 438 E + +F ATL + ++ +L +E+ +L SPF+Y+ +A L V + Sbjct: 687 LTENVYPYFAQPLFVGATLFTSSRSNYLYEQLDLEKDRTLQKRFASPFNYAERAELLVAK 746 Query: 439 NLPQTN---QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPV 492 + P N R LA + + + N + +L S + + Q + T + Sbjct: 747 DAPIPNQTNNEEYTRYLAQTIYQLCKNNQCQTMILFNSLVTIEQVYSQLKETDLFDQRDI 806 Query: 493 LLQGETSK-GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLK 551 L QG T + +LL+QF S +++L+ SSFWEG+D+ +L L+II +LPF SP++ + + Sbjct: 807 LAQGITGRREKLLKQFASGTSSILLGASSFWEGIDLPKSSLELLIITRLPFDSPNEIMTR 866 Query: 552 ARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFL 611 A + G +PF LP A + L+QG+GRL+R +D GV VI D+R+ R YG++ L Sbjct: 867 AHNNLLKREGKNPFYHSALPKATMRLQQGIGRLLRTPNDFGVGVILDSRISTRRYGSSIL 926 Query: 612 ASLPPA------PRTRDIARAVRFL 630 +LP P T + A +FL Sbjct: 927 KNLPKDLPIKELPTTELVESAKKFL 951 >UniRef50_C2D9J0 Possible ATP-dependent DNA helicase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D9J0_9ACTN Length = 1011 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 175/696 (25%), Positives = 282/696 (40%), Gaps = 98/696 (14%) Query: 4 DFAPDGQLAKAI--PGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP--- 58 DF+ G +A+ ++ R Q++MAV VT GQ V+E GTG GK+ AYL P Sbjct: 307 DFSSAGCVAQMFLSQNYEVRPTQQEMAVRVTSLQNSGQCGVLEVGTGVGKSLAYLLPSVS 366 Query: 59 -ALRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL 117 A++ ++ ++T + AL +QL ++LP + + + ++KG +Y LE ++ Sbjct: 367 RAVQNDIQIGVATKTNALAEQLIKKELPQLHEVYPKDFSYLIVKGAEHYPYLEGIDTLMR 426 Query: 118 AGGDL-------------PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTS- 163 D +IL+ ++ S + VD D+ + V S Sbjct: 427 EEFDTSQFKDIRFSSSKIKAEILTTAAIIYSACCELVDVDVDSLGIRWNMIPKGDFVASH 486 Query: 164 -TNDNCLGSDCPMYKDCFVVKA--RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD 220 T N S C + + + R++ A +VV NH L D+ + L P Sbjct: 487 RTGSNHTLSTCAPH----YMLSELRERTQHAHIVVTNHALLATDIALGHV----LFPLVS 538 Query: 221 VMIFDEAHQLPDIASQYFGQSLSSRQLLD----------------------------LAK 252 I DEAH D + Q LS D L K Sbjct: 539 NWIVDEAHGFADQVRDQWAQELSQDVFSDLFYTLGGIKTGLLGDMFSSSSNSEQKPLLQK 598 Query: 253 DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLD 312 I+ A + + + D L D R + ++ + ++ Q A+ + Sbjct: 599 LISKAAVLVAQLRVKNEDLFDCLNTVVLDDRYHFSRGAHTHMIQRVDSSIVSQDAW---N 655 Query: 313 DTLELCYDVAKLSLGRSALL---------------DAAFER----ATLYRTRLKRLKEIN 353 L+ + AK A+L D F+R + Y + RL + + Sbjct: 656 AFLDKMSEFAKTFDTLKAVLIQLCKAISNEASLHRDVDFKRVCAYVSSYLGVITRLTQGS 715 Query: 354 QPGYSYWYECTSR----HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFT 409 + G+ Y E + L L + + S ++TSATLS+ +F Sbjct: 716 EDGFVYTVERVKQKKAYQTYLKEMCLDIGKRLYTDWYLDAQSVLYTSATLSIEQSFEYFD 775 Query: 410 SRLGI-----EQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANN 464 +G+ ++ E+ LPSPFDY + V NL + L+ +L I A N Sbjct: 776 HSVGLDRLNSDRVETKTLPSPFDYENHMGVIVPNNLVLPQHEKYIQCLSNLLFDIHVAMN 835 Query: 465 GRCFMLCTSHAMMRDLAEQF---RATMTLPVLLQ-GETSKGQLLQQFVSAGNALLVATSS 520 G L T+ M ++ + + L +L Q TS Q+++ F A LVA S Sbjct: 836 GSVLTLFTNRREMEAVSSKLVPRLESHGLTLLEQLPTTSAQQIMRGFKKDTTASLVALKS 895 Query: 521 FWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQG 580 FWEG+D GDTL V+I +LPF P DP+++A R + LP A+ ++Q Sbjct: 896 FWEGIDAPGDTLRCVVIPRLPFVPPTDPIVEA----LTERDSSTWWNYVLPRAITEVRQA 951 Query: 581 VGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPP 616 GRLIR D G+++I D R++ + YG L +LP Sbjct: 952 AGRLIRTQHDSGLVIIADTRVLSKAYGKHVLHALPN 987 >UniRef50_A6BD56 Putative uncharacterized protein n=7 Tax=Clostridiales RepID=A6BD56_9FIRM Length = 658 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 151/660 (22%), Positives = 257/660 (38%), Gaps = 52/660 (7%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + F L +A G RE Q ++ + A+ K + + +AG G GKTYAYL + Sbjct: 15 VEQIFRE--LLPEA--GLHVREEQIRLCHEMLDALMKNEITLCDAGVGIGKTYAYLTACI 70 Query: 61 RAK--------------KKVIISTGSKALQDQLYSRDLPTV------SKALKYTGNVALL 100 + + V++ST S ALQ + +P + + L+ + Sbjct: 71 LMRKYSVLHSGYSGCDRRSVVVSTSSIALQKAIIEEYVPFLSDVLLKADLLQGELKAVVR 130 Query: 101 KGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL 160 KG+ +++C RL Q+ A D L N D+ + +++ Sbjct: 131 KGKEHFVCDYRLAQRLEAVRDKNKNQAQMEALKSLRHN----FDLDSVHNLSGFD---RR 183 Query: 161 VTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVV--VVNHHLFLADMVVKESGFGELIPE 218 + C CP C K + D+ + NH+ LAD + + +G+ L+ + Sbjct: 184 LVCVPKFCPRE-CPGKAGCRYQKHLDISRKEDIFLQICNHNYLLADAMHRANGYRPLLAD 242 Query: 219 ADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQS 278 ++ DEAH+LP+ ASQ +G+S+ + ++A + + D ++L + L Sbjct: 243 YRALVVDEAHKLPEAASQMYGRSIGREDVQEIA--YFLVREHKGTDGKRLLEGVSALQME 300 Query: 279 AQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFER 338 + R E A L E + K G F R Sbjct: 301 IRKHRKDGIEDMAGKESFYFPPG-----AGTALAQMQERLQLMIKRLAGNIPYW--TFRR 353 Query: 339 ATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSAT 398 + ++ + + + H T + + + I TS T Sbjct: 354 LEEMEELFGWFLKNDKRYILFLQQDSRGHLTFMAVNREIPKYLDTTLWSQGFPAILTSGT 413 Query: 399 LSVNDDLHHFTSRLGIEQ---AESLLLPSPFDYSRQALLCVLRNLPQT--NQPGSARQLA 453 L + G+E+ + SPF Y LL + +L A QLA Sbjct: 414 LKAGNGFARTRQMTGLEKETGVRECVAESPFCYQENCLLYIPEHLKPRKKGSREEAEQLA 473 Query: 454 AMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNA 513 +R ++ + G +L TS+ +M ++ + R + P++ S+ ++ +F NA Sbjct: 474 GQIRDLVCSTYGHTLVLFTSYTLMGNVQQLLRDQIPFPMVQVWRNSQEEI-ARFKKMENA 532 Query: 514 LLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDA 573 +L A S WEGVD GD +S +II KLPF+ P DP+ +A+ E R + +PD Sbjct: 533 VLFAAGSCWEGVDFPGDMVSSLIIVKLPFSVP-DPIHEAQREQYRSL-KSYIQTIVVPDM 590 Query: 574 VITLKQGVGRLIRDADDRGVLVICDNRLVMR-PYGATFLASLPPAPRTRDIARAVRFLAI 632 L+QG GR IR D V+ I D+R + Y + L +LP I F+ Sbjct: 591 QKKLRQGFGRAIRTEQDTCVVSILDHRATKKGRYRSDVLEALPKCQMAERIEEVEDFIRS 650 >UniRef50_UPI0001C37E7F helicase c2 n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37E7F Length = 633 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 154/637 (24%), Positives = 272/637 (42%), Gaps = 59/637 (9%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 G + R Q M+ + QAI + L VEA G GK+ AYL P + R +K++II+T + Sbjct: 23 GLQRRPGQIAMSQEIAQAIADNKSLAVEAEVGIGKSIAYLVPLVIQYFRERKQMIIATST 82 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 ALQDQL D+ V + L +V + KG NY+CLER + D Q Sbjct: 83 IALQDQL-ESDILNVLELLGVRADVEIAKGMKNYVCLERFHRFTREHKDYTRQFDRAKYG 141 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVT--STNDNCLGSDCPMYKDCFVVKARKKAMD 190 L+ + V + W + S D C S+C C R++ + Sbjct: 142 LQLRQDVYVP------------DEVWDKICINSFGDKC--SECSFRHKCEYSLMRERIRN 187 Query: 191 AD-VVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLD 249 D +V+ N ++ ++ + +ESG G P+ ++ DEAH L + F + S +++ + Sbjct: 188 KDEIVICNQNMLVSHFIKEESGEGIFKPDFSTLVVDEAHNLENNFRDAFTTAYSQKEISN 247 Query: 250 LAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFL 309 + L + Q DF L ++ + + Sbjct: 248 ------EVLKATENRKNILSSRIVEIIQMVDDFFKYLKYDIHQQQSKSIDDMRTYYY--- 298 Query: 310 LLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFT 369 +V KL L + + R L+ + + W + Sbjct: 299 ------RPIREVRKLVLRIRSAMLEIEMRTNRRLNCLQMFRNLENKDCLVWLTTE-KGVR 351 Query: 370 LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDD------LHHFTSRLGIEQAESLLLP 423 + + + + L+ + I TSAT++ + +F + LG + P Sbjct: 352 VNICKKDIRREIGRLLFTESRRTILTSATITSQNSGTLSEKYRYFLNNLGCPNNVCVSEP 411 Query: 424 --SPFDYSRQALLCVLRNLPQTNQPG---SARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 SP++Y + +++ V LP N+ + ++ G+ +L T+ M+ Sbjct: 412 KKSPYNYDKHSIMYVSDKLPIPNKRNRTAYRNAAIKEIVKLLNITEGKALILFTAKDDMQ 471 Query: 479 DLAEQFRAT-MTLPVLLQGETSKGQL-LQQFVSAGNALLVATSSFWEGVDVRGDTLSLVI 536 + ++ + +++Q E++ + L++F + N++L+ T ++WEG++++G++LS VI Sbjct: 472 YVFKKLSNMGLPYKIMVQDESTTQERRLEKFQNNVNSVLLGTGTYWEGINIKGESLSQVI 531 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 I KLPF P DP++ E + P +V +P+ +I LKQGVGRLIR ++D+G++ I Sbjct: 532 IFKLPFPVP-DPIV----EYKMRKTECPLMDVAVPEMIIKLKQGVGRLIRSSEDKGIVSI 586 Query: 597 CDNRL---VMRPYGATFLASLPPAPRTRDIARAVRFL 630 D R+ Y LASLP T DI F Sbjct: 587 LDPRVSKSQNTAYREDTLASLPEKNTTEDITELEEFW 623 >UniRef50_P27296 Probable ATP-dependent helicase dinG n=174 Tax=Enterobacteriaceae RepID=DING_ECOLI Length = 716 Score = 369 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 171/685 (24%), Positives = 278/685 (40%), Gaps = 80/685 (11%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAI--EKGQPLVVEAGTGTGKTYAYLAP----ALRAK 63 L + IP F PR PQRQM V + + E+G+ L +EA TG GKT +YL P A + Sbjct: 17 ALQEQIPDFIPRAPQRQMIADVAKTLAGEEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQ 76 Query: 64 KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP 123 K +++ST + ALQDQ+YS+DLP + K + GR Y+C L A Sbjct: 77 KTLVVSTANVALQDQIYSKDLPLLKKIIP-DLKFTAAFGRGRYVCPRNLTALASTEPTQQ 135 Query: 124 V------QILSDVILLRSWSNQTVDGDISTCVS--------VAEDSQAWPLVTSTNDNCL 169 L+ + GD+ T +A D W +++ +CL Sbjct: 136 DLLAFLDDELTPNNQEEQKRCAKLKGDLDTYKWDGLRDHTDIAIDDDLWRRLSTDKASCL 195 Query: 170 GSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQ 229 +C Y++C AR++ +A+VVV NH L + ES P+ +++ DE H Sbjct: 196 NRNCYYYRECPFFVARREIQEAEVVVANHALVM---AAMESEAVLPDPKNLLLVLDEGHH 252 Query: 230 LPDIASQYF--GQSLS-------SRQLLDLAKDITIAYRTE-----------LKDTQQLQ 269 LPD+A ++ L +R + ++L Sbjct: 253 LPDVARDALEMSAEITAPWYRLQLDLFTKLVATCMEQFRPKTIPPLAIPERLNAHCEELY 312 Query: 270 KCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRS 329 + L + E +R + EL ++ L E+ +A+L L Sbjct: 313 ELIASLNNILNLYMPAGQEAEHRFAMGELPD--EVLEICQRLAKLTEMLRGLAELFLNDL 370 Query: 330 ALLDAAFERATLYR------------------TRLKRLKEINQPGYSYWYECTSRHFTLA 371 + + + L+R RL L + + + W R L Sbjct: 371 SEKTGSHDIVRLHRLILQMNRALGMFEAQSKLWRLASLAQSSGAPVTKWATREEREGQLH 430 Query: 372 LTP----LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ---AESLLLPS 424 L + V+D+ + L+ + I TSATL + G+++ + L S Sbjct: 431 LWFHCVGIRVSDQLERLLWRSIPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDS 490 Query: 425 PFDYSRQALLCVLRNLPQT---NQPGSARQLAAMLRPIIEANNG-RCFMLCTSHAMMRDL 480 PF++ Q + + R + N+ ++AA R +E+ +L S M+ Sbjct: 491 PFNHCEQGKIVIPRMRVEPSIDNEEQHIAEMAAFFRKQVESKKHLGMLVLFASGRAMQRF 550 Query: 481 AEQFRATMTLPVLLQGETSKGQLLQQFVSA----GNALLVATSSFWEGVDVRGDTLSLVI 536 + + L +L+QG+ + +L++ ++LV SF EG+D++GD LS V Sbjct: 551 LDYV-TDLRLMLLVQGDQPRYRLVELHRKRVANGERSVLVGLQSFAEGLDLKGDLLSQVH 609 Query: 537 IDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 I K+ F D P++ E + PF+ LP A L Q VGRLIR G +VI Sbjct: 610 IHKIAFPPIDSPVVITEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHGCWGEVVI 669 Query: 597 CDNRLVMRPYGATFLASLPPAPRTR 621 D RL+ + YG L +LP P + Sbjct: 670 YDKRLLTKNYGKRLLDALPVFPIEQ 694 >UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C0WTL9_LACBU Length = 945 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 157/693 (22%), Positives = 257/693 (37%), Gaps = 82/693 (11%) Query: 16 PGFKPREPQRQMAVAVTQAIEKGQP-----LVVEAGTGTGKTYAYLAP---ALRAKKKVI 67 P + R Q +M + LV+EA TG GK+ Y P A+K V+ Sbjct: 257 PHLESRIEQNKMMNMIYNNYASDGHHPAKPLVIEAPTGIGKSLGYSLPFSYLASAQKPVV 316 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 IST + LQ QL ++ LP ++++L + N +LKG S+Y+ L + + L D VQ Sbjct: 317 ISTATTYLQFQLQNQTLPLLNQSLPFKINSVILKGASHYIDLNKF-RHLLFVADSSVQTA 375 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 + W T GD+ E + + + L ++ P Y + F+ KK Sbjct: 376 FIKAQILVWLTMTTTGDLDELHLNVEQTPFVWTIQHSGVKWLDANSPFYDEDFLRYNLKK 435 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 A +AD ++VNH L K F P ++ DE Q + A + + ++ + Sbjct: 436 AQNADFIIVNHSYLL-----KNWQFFSGFPVKPYLLIDETQQFAETAIRNNQKQINPLTV 490 Query: 248 LDLAKD--------ITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYR------- 292 + + R L AD L +S + L + +R Sbjct: 491 MSAVNRVRGDIQEGHYKSARDAFSGNSVLNNSADDLDESLNQIKSLLKQLTHRLYSQMIA 550 Query: 293 --------GNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA---------- 334 L+ ++ +T+ D L++ Sbjct: 551 NQQLHKNASFFVRLIPISDLKAIINENRETITRLQDKQSEVEDLLIRLNSEIDHSTDAFT 610 Query: 335 ---------AFERATLYRTRLKRLKEINQPGY------SYWYECTS----RHFTLALTPL 375 +E + +L L W FT+ L Sbjct: 611 NRDYSSIYDFYEDFNEFAEKLTFLLSTIDMDESAINQNVVWVTVNHVKDINSFTINQGIL 670 Query: 376 SVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPSPFDYSRQAL 433 D + FT AT+ + + LGI++ A L S FD QA Sbjct: 671 KTEDYLNHRIYASFEPPTFTGATIFSSRRSQFIFNLLGIDRKAASVRRLQSDFDPKNQAR 730 Query: 434 LCVLRNLPQ----TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT 489 + ++ + TN +Q+A + I +A+ + +L S ++ + Sbjct: 731 IYLIDKQSREHFITNSDDYLQQVAQSIEKIYQASPRQTLVLFNSLKAIKKTHQFLSKDGF 790 Query: 490 LP---VLLQGETSKG-QLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSP 545 VL QG +L +QF+ A+L+ ++FWEGVD L +II +LPF +P Sbjct: 791 TATHLVLAQGVNGTAARLSKQFIHNEPAILLGANTFWEGVDFPAHLLENLIIAQLPFDTP 850 Query: 546 DDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRP 605 +DP A R +G +PF + LP A + L+QG+GRL+R D G + + D RL + Sbjct: 851 EDPYNHALYSVERSKGKNPFYSLALPKATLRLRQGMGRLLRTKADYGTIFVLDPRLTTKR 910 Query: 606 YGATFLASLPPAPRTRD------IARAVRFLAI 632 YG T L +L I V+F Sbjct: 911 YGQTILTNLKNEIPVMTGQLDDCINDMVKFFES 943 >UniRef50_A0LUZ2 Helicase c2 n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LUZ2_ACIC1 Length = 710 Score = 367 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 175/671 (26%), Positives = 257/671 (38%), Gaps = 95/671 (14%) Query: 37 KGQPLVVEAGTGTGKTYAYLAPAL----------RAKKKVIISTGSKALQDQLYSRDLPT 86 + L+V+AGTGTGK+ AYL PA+ ++ VI++T + ALQ QL RDLP Sbjct: 45 DKRHLLVQAGTGTGKSLAYLVPAMWHVTARDDADDERRPVIVATATLALQRQLVERDLPR 104 Query: 87 VSKA----LKYTGNVALLKGRSNYLCLERL-----------EQQALAGGDLPVQILSDVI 131 + + L A+LKGR NYLC RL + L LP+ + Sbjct: 105 LVEVLSPLLPRRPTFAILKGRRNYLCRLRLGGSDQPDLLADDLDVLPMDALPMDVARAGA 164 Query: 132 LLRSWSN----------------QTVDGD-----------ISTCVSVAEDSQAWPLVTST 164 + G+ S +W TST Sbjct: 165 APAREKTGGAGVIAAGLPGTANVRQGTGESPDAPAAGFLAWSALGREVARITSWANETST 224 Query: 165 NDN----------------CLGSDCPMYKDCFV------VKARKKAMDADVVVVNHHLFL 202 D +C C AR +A AD+VV NH + Sbjct: 225 GDRDELVPGVSERAWGQFAVTARECVGASRCPHGSRCFSELARIRAGQADIVVTNHAMLA 284 Query: 203 ADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTEL 262 D+ G ++PE DV+I DEAH+L D + L + ++ +A + Sbjct: 285 VDV----LGDAPVLPEHDVVIVDEAHELVDRVTAAATAELGAADVVRVANRLRTFASVAA 340 Query: 263 KDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVA 322 ++ D + RL + ++ + D Sbjct: 341 GRLERAVGEFDAALRDVSVGRL-------------IDLPERLVTVLSGIRDAAREGVSAL 387 Query: 323 KLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR-HFTLALTPLSVADKF 381 + A A R G W + R L PL VA Sbjct: 388 LGEITVDGRRAQARAAAEELFDTASRFL-AGDSGDVRWLDRDDRGGAVLRAAPLDVAPLL 446 Query: 382 KELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYSRQALLCVLRNL 440 + + + TSATL+V H RLG+ +L + SPF Y RQ +L V +L Sbjct: 447 RNAIFAS-RIAVLTSATLTVGGSFHPMIERLGLHHDVRTLDVGSPFSYQRQGILYVASHL 505 Query: 441 PQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSK 500 P + G + L ++ A GR L +S ++ A R + PVL QG+ + Sbjct: 506 PPPGRDGISADALEELVALMTAAGGRTLGLFSSMRAAQEAAAFARERVDFPVLCQGDDAT 565 Query: 501 GQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLR 560 +L+++F + L T S W+GVDV G LV++D++PF PDDPL+ AR + Sbjct: 566 AELIRRFAADAQTCLFGTLSLWQGVDVPGAACQLVVVDRIPFPRPDDPLMAARQQAVTEA 625 Query: 561 GGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 GG+ F +V A + L QG GRL+R DRGV+ + D+RL Y +SLPP T Sbjct: 626 GGNGFLQVAAGHAALLLAQGCGRLLRSPHDRGVVAVLDSRLATARYARFLRSSLPPFWYT 685 Query: 621 RDIARAVRFLA 631 D R L Sbjct: 686 TDRDLVCRSLR 696 >UniRef50_A8MJA6 DEAD_2 domain protein n=11 Tax=Clostridia RepID=A8MJA6_ALKOO Length = 800 Score = 361 bits (927), Expect = 4e-98, Method: Composition-based stats. Identities = 123/633 (19%), Positives = 229/633 (36%), Gaps = 60/633 (9%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 P R+ QR++AVAV + I++ + L +A TG GKT + L P + K Sbjct: 195 QFPFSNYRKGQRELAVAVYRTIKEEKKLFAQAPTGIGKTISTLFPTV------------K 242 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 A+ + + S+ +K + R++ L + + + Sbjct: 243 AIGEGITSKVFYLTAKTITRQVA---------EEAFSRMKSMGLRFKTVTLTAKDKICFE 293 Query: 134 RSWSNQTVDGDISTCVSVAEDS---QAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMD 190 + + + S + S + ++ C + A+ Sbjct: 294 KGKQCNPEECSFAKGHFDRVKSGLADLFQNEDSFTREIIEFYAQRHQICPFEFSLDIAIW 353 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 AD V+ +++ V + F + + +I DEAH L D + F ++ + L+ Sbjct: 354 ADGVICDYNYVFDPRVYLKRFFADEKGDYTFLI-DEAHNLVDRSRGMFSAEINKKIFLEQ 412 Query: 251 AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLL 310 + + + + K D+L + R + GE + E N +I Sbjct: 413 KRVMKHQSQK-------VYKTLDKLNAFMIEARKKCGEHSFYIQKEE---NTEIYHLLAS 462 Query: 311 LDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTL 370 + + LL+ F + + E Y + E Sbjct: 463 FVRETDELFKEGYQMDENKDLLELYFNAFAFLK-----IAEFYDERYRTYIEKRQGDVFF 517 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG-IEQAESLLLPSPFDYS 429 + L + E + ++ + IF SATL+ L +F LG E+ ++ L SPF+ Sbjct: 518 KIFCLDPSYLLGEAI-KRGRTAIFFSATLTP---LPYFKEILGGAEEDYAIRLGSPFESE 573 Query: 430 RQALLCV-LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 L+ + N+ S +A ++ + E G F+ S+ MR + + F Sbjct: 574 NLGLMVADYISTKYRNRDRSYIHIADVIAKVSEGKTGNYFVFFPSYQYMRRVLDVFVEEY 633 Query: 489 T-LPVLLQ----GETSKGQLLQQFVSAG--NALLVA--TSSFWEGVDVRGDTLSLVII-- 537 + VL Q E + + L +F ++ F EGVD+ G+ L VII Sbjct: 634 PHINVLQQQQTMTEEEREEFLNKFEDQPERTSIAFGVLGGIFSEGVDLVGERLIGVIIIG 693 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 LP S + L+ ME + ++ + + + QG GR+IR DRG++ + Sbjct: 694 VGLPQLSLEVNLI---MEYFNQKNNKGYEYAYMFPGMNKVLQGAGRVIRTETDRGIVCLV 750 Query: 598 DNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 D+R Y A F + +D + +L Sbjct: 751 DDRFTSYGYQALFPPEWKHFRKVKDKKQIETYL 783 >UniRef50_Q8XL45 Probable helicase protein n=7 Tax=Clostridium perfringens RepID=Q8XL45_CLOPE Length = 781 Score = 361 bits (926), Expect = 6e-98, Method: Composition-based stats. Identities = 115/628 (18%), Positives = 216/628 (34%), Gaps = 62/628 (9%) Query: 4 DFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK 63 DF D P R+ QR++A+ V ++I +G+ EA TG GKT + L PA+ Sbjct: 176 DFRNDSIENFNFPFKSYRKGQRELAIRVYKSITEGKKCFAEAPTGIGKTMSTLFPAV--- 232 Query: 64 KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP 123 KAL + + +K L+ + ++ L + Sbjct: 233 ---------KALGAKETQKIFYITAKTTTREIANNTLRI---------MREKGLNLRSVN 274 Query: 124 VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND---NCLGSDCPMYKDCF 180 + + + + + + + Y C Sbjct: 275 ITAKEKCCKMEEKKCIPEYCPYANGYFDRVNIALKEALRHKEEYDLEYINKLSKEYNICP 334 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 + + + DVV+ +++ D G E + ++ DEAH L D + Sbjct: 335 FEFSLELSNFCDVVICDYNYIF-DPQASLKGILEGKAKDYTILIDEAHNLLDRGRSMYSS 393 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 + L L ++ + + K + ++ + L+ Sbjct: 394 KIFKDDFLKLKREFKSKDKGIYNSLDRANKYLIEKRKVLENLETK-----------SLVE 442 Query: 301 NPQIQRAFLLLDDTLELC-YDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359 + + +L LE +K S S LL+ F + ++ Sbjct: 443 KEEPSDLYGILRGFLEKVDIYESKSSEENSNLLELYFNVYEFL-----NICGYYGEDFTT 497 Query: 360 WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-AE 418 Y+ + L++ L + K +M + S I SATL + +F G ++ Sbjct: 498 LYKLDGNNLELSINCLDPSRILKSIM-NRFKSVIIFSATLLP---MEYFKELYGAQEGDY 553 Query: 419 SLLLPSPFDYSRQALLCVLR-NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 S+ L SPFDY + + + +N+ + ++ + ++ G + S+ M Sbjct: 554 SVNLTSPFDYKNKLTIVGKDVSTTYSNRKRTLPKIVNYIIECAKSKRGNYLVFFPSYEYM 613 Query: 478 RDLAEQFRAT-MTLPVLLQG----ETSKGQLLQQFVSAGN----ALLVATSSFWEGVDVR 528 + E+ + + ++ QG E K + L F G L V F EG+D+ Sbjct: 614 WMVHEEIKKREVDFSLVAQGDHMNEEEKEEFLSLFKEGGEKTHLGLAVLGGHFSEGIDLT 673 Query: 529 GDTLSLVII--DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIR 586 D L VII +P + +K E G + FD + +I + Q GR IR Sbjct: 674 LDKLIGVIIIGVGMPKICLERESIK---EYYNSIGKNGFDYAYVYPGIIKVLQAAGRCIR 730 Query: 587 DADDRGVLVICDNRLVMRPYGATFLASL 614 D+GV+++ D+R Y + Sbjct: 731 TEKDKGVVLLLDDRYFTNKYKSLLPREW 758 >UniRef50_C0FSD6 Putative uncharacterized protein n=2 Tax=Roseburia RepID=C0FSD6_9FIRM Length = 669 Score = 360 bits (924), Expect = 1e-97, Method: Composition-based stats. Identities = 149/648 (22%), Positives = 265/648 (40%), Gaps = 40/648 (6%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK------KVIIST 70 G R Q+++++ + +A+++ + + EA GTGKT+AY+ +IST Sbjct: 21 GMNLRVKQKELSLEMLRALQENKLALCEAEVGTGKTHAYILALTVHNIYSDKKIPAVIST 80 Query: 71 GSKALQDQLYSRDLPTVSKAL------KYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 + ALQ L +P +S L + + KG+ +Y+C RL+ + +L Sbjct: 81 STIALQKALTEEYIPQISGILLEHHVIDKPLSFVVRKGKRHYVCDSRLKIYETSLKNLQR 140 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 ++ +++IL + + + D + CP C + Sbjct: 141 EVDANLILELARLGE-QEFDRIDLDDAVLTPYVKGRINVFR---CNKSCPYSLLCRFMNF 196 Query: 185 RKKAM--DADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSL 242 +KK M + D + NH+ LAD++ ++ G L P M+FDE+H+L D A Q + Sbjct: 197 KKKCMTDNFDFQITNHNYILADLIGQKQGRKPLFPGYGAMVFDESHKLIDAARQMYSTVW 256 Query: 243 SSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQL-----GEPGYRGNLRE 297 + + + RT D + + +LA+ + +L G G+ E Sbjct: 257 DEQDAEFIVGLSEVNRRTTGMDELTVLR--SQLAEYNRQIFDRLAGDLAGNHTREGSRIE 314 Query: 298 LLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGY 357 ++ + + LE + + G+ L +R +L Sbjct: 315 IVIGSMEKIYIRHMAKALEQLPLSYQENSGQKMRLQGLKKRCQELTDKLTIFLNSG--NS 372 Query: 358 SYWYECTSRH-FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ 416 W E L P+ + + +P I TS T+SV D HF G+ Sbjct: 373 ICWMEKRENGRLALCAVPMELEQVLFRDIWSRPIPVIITSGTMSVRGDFSHFKRMTGLSF 432 Query: 417 AESLLL-----PSPFDYSRQALLCVLRNLPQTN--QPGSARQLAAMLRPIIEANNGRCFM 469 A + PSPFD+ LL + +P N + + + I+ A +G + Sbjct: 433 AALSRIMETSKPSPFDFQSNGLLYIPERMPFPNIRDDRYIQAIMEEIVQIVSATHGHTLI 492 Query: 470 LCTSHAMMRDLAEQFRATM-TLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVR 528 L TS+ +M + + + P+ L G + ++ F +GN +L A+ S EG+D+ Sbjct: 493 LFTSYWLMERVFYGLKEQLSDYPLFLMGR-GRLDVISSFRRSGNGVLFASDSAGEGIDLA 551 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 GD LS +I+ KLPF P DP+++ + ++ +P+ +I L+Q GR IR Sbjct: 552 GDILSSLIVVKLPFPVP-DPVMEYQRNQYDDFDLYR-RDIIIPEMLIKLRQWFGRGIRRE 609 Query: 589 DDRGVLVICDNRLVMR-PYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 D V I D+R +R Y A L ++P P T + F+ + Sbjct: 610 KDTAVFSILDSRASLRGRYRAEILNTMPTMPVTDRLMDVADFIIRKKA 657 >UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, putative n=11 Tax=Lactobacillales RepID=A5VK04_LACRD Length = 954 Score = 360 bits (923), Expect = 1e-97, Method: Composition-based stats. Identities = 156/690 (22%), Positives = 282/690 (40%), Gaps = 78/690 (11%) Query: 18 FKPREPQRQMAVAVTQAI--EKGQPLVVEAGTGTGKTYAYLAPA---LRAKKKVIISTGS 72 + R Q +M ++ ++ + ++VEAGTG GKT YL P KK+++ST + Sbjct: 267 LRLRPVQAKMMNSIYNNYTHDEPKNMIVEAGTGVGKTLGYLFPLSYVAYPDKKIVVSTAT 326 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 LQ Q+ + ++K L + N ++KG ++Y+ + R D + + Sbjct: 327 NILQQQIIDTSIAQLNKVLPFKMNSVIIKGNAHYIDIARFVHSLSVIEDSKL-VQLLKAK 385 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 + W T GD+ ++ S + + L Y D F+V+ K+ AD Sbjct: 386 ILVWLLSTQSGDLDELNLNSQQSPYFTEIRHQGIRSLNPVNAFYHDDFLVRREKRLHQAD 445 Query: 193 VVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAK 252 +++ NH +A +E G G P ++ DEA L + + ++ + ++L Sbjct: 446 IIITNHAYLVAH--AQELGDGTRRP---YLVIDEAQHLSESILKRSRRTFNFQKLRTAVH 500 Query: 253 ---------------DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE----PGYRG 293 DI + + L+ + + ++ F+ L Sbjct: 501 VMSGLVNNGNDRNLTDIFAEQALGSYNVELLRGDLNAVEEAVDLFQQALYRQYMASATSN 560 Query: 294 NLRELLANPQIQRAFLLLDDT-------LELCYDVAKLSLGRSALLDA-------AFER- 338 EL+ P + L D LE +L + L + +R Sbjct: 561 PDNELIEQPLRNDQVMSLLDISGPVMMKLEQALSSVQLHFSALSHLFSSQPDRWLLSDRY 620 Query: 339 -ATLYRTRLKRLKEINQ-------------PGYSYWYECTSRH----FTLALTPLSVADK 380 + ++++L +L E +Q ++W L+ L Sbjct: 621 LMSQFQSQLAKLIEADQTLNEFNETLQQQGEAAAFWITIRQSSEQSALQLSGGLLEATHY 680 Query: 381 FKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL--LLPSPFDYSRQALLCVLR 438 + + +F ATL + + +L +E+ +L SP++Y + A L + Sbjct: 681 LTKNVYPYFAQPLFVGATLFTSPRSPYLYHQLDLERNNTLTRRFASPYNYKQNAKLLIAE 740 Query: 439 NLPQT---NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPV 492 + P N + L+ + + + + + +L S M+ + Q R T + Sbjct: 741 DAPVPSAQNNSDYIKYLSDTIYQLTKNADYQTMILFNSLVMIEQIYSQLRETDLFDQRDI 800 Query: 493 LLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLK 551 L QG ++ ++L+QF N++L+ SSFWEG+D+ L L+II +LPF SPD+ + + Sbjct: 801 LAQGITGNRDKILKQFSGGKNSILLGASSFWEGIDLPESALELLIITRLPFDSPDEIMNR 860 Query: 552 ARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFL 611 A + + +G +PF +LP A + L+QG+GRL+R DD GV V+ D RL R YG T L Sbjct: 861 AHNKLLQQQGKNPFYHSELPKATMRLRQGIGRLLRTEDDHGVAVVLDPRLQTRRYGKTIL 920 Query: 612 ASLPPAPRTRD------IARAVRFLAIPSS 635 +SLP I+ +FL Sbjct: 921 SSLPTDLPVNSKKTADLISITQKFLRNGKE 950 >UniRef50_C9B220 DEAD_2 helicase n=4 Tax=Enterococcus RepID=C9B220_ENTCA Length = 832 Score = 360 bits (923), Expect = 1e-97, Method: Composition-based stats. Identities = 124/650 (19%), Positives = 222/650 (34%), Gaps = 75/650 (11%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 + P R+ QR++A A + ++ G+ L EA TGTGKT + L PAL K Sbjct: 217 SFPFETFRKGQRELAAAAYKTLKNGKRLFAEAPTGTGKTMSTLFPAL------------K 264 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 L ++ R +K + L +L + + + L Sbjct: 265 VLGEEGADRVFYLTAKTITRQVA---------EDALSKLADNGSETKSVTITAKDKICFL 315 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTN---DNCLGSDCPMYKDCFVVKARKKAMD 190 + + + W L+ N + + + C + ++ Sbjct: 316 DERNCTPEHCPYAQGYYNRINEALWDLLHHENQITREVIETYGMKHTVCPFELSLDVSVF 375 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 DV++ +++ D V F E E + DEAH L + + + + ++ + +L Sbjct: 376 CDVIIGDYNYLF-DPTVYLRRFFEEPDEEYFFLVDEAHNLVNRSKEMYSATILRQPFKEL 434 Query: 251 AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLL 310 K KD Q+L++ +R+ + E G+ + + + + Sbjct: 435 KK-------KLPKDQQKLKRALNRVDKEFAALAQLAKEEGWSYH-HQAAPHETMVNQLYK 486 Query: 311 LDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTL 370 L + ++ + +L FE + + E Y E L Sbjct: 487 LAELMKEWLPANPEHELQEEVLQVYFEANHYLK-----ISEFYDDHYETTVEIDRYDIKL 541 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYS 429 + A E + K + + SA L ++ LG ++A LPSPFD Sbjct: 542 RQFCIEPAPFL-ESVLDKGKASLLFSA---SFTPLSYYQEVLGGGDEALRYRLPSPFDPK 597 Query: 430 RQALLCV-LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 Q + + S + ++ + A G + S+ + D+A F Sbjct: 598 NQGIFIADYIQTTYRQREASIPAIVDAIQQMTAAKAGNYMVFFPSYRYLDDVAAAFSQQA 657 Query: 489 T-LPVLLQG----ETSKGQLLQQFVSAGN---------------------ALLVATSSFW 522 + VL+QG E + L QF S + A V F Sbjct: 658 PEVEVLIQGTAMNEAEREAFLAQFQSFDSQQSSLLDKSQDEPKSQPKTLVAFCVLGGIFS 717 Query: 523 EGVDVRGDTLS--LVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQG 580 EG+D++GD L V+ LP + + L++ E + F + + Q Sbjct: 718 EGIDLKGDRLIGAAVVGVGLPQINHEQELIR---EYYDEKKAAGFAYAYQLPGMNKVLQA 774 Query: 581 VGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 GR+IRD DRGV+++ D R Y F A + R + L Sbjct: 775 AGRVIRDVSDRGVVLLLDQRFRTPRYQELFPLHWQHALQIRRPQELSKAL 824 >UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E9B0_9LACO Length = 968 Score = 359 bits (921), Expect = 2e-97, Method: Composition-based stats. Identities = 142/674 (21%), Positives = 245/674 (36%), Gaps = 79/674 (11%) Query: 20 PREPQRQMAVAVTQAIE-KGQPLVVEAGTGTGKTYAYLAPALRA---KKKVIISTGSKAL 75 R+ Q +M + + + L+V+A TG GKT YL P ++ST + AL Sbjct: 288 WRKEQAKMMNDIYEHFNGDEKMLLVQAPTGMGKTLGYLVPGAYQAQEGASTVVSTSTTAL 347 Query: 76 QDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRS 135 DQ+ +P + K + + ++KG +Y+ LE+ + ++L + + S Sbjct: 348 LDQIVKESVPLLKKIVPFDFTYEVMKGSGHYIDLEKFSHTLKIPMNNQTRLLQ--MRILS 405 Query: 136 WSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVV 195 W QT GD+ +Q + ++ L Y FV + AD V Sbjct: 406 WLWQTTTGDMDELRLTTYRAQLFKMIKHAGVGSLSDKSAFYGLDFVRLRDVRVKFADFVF 465 Query: 196 VNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG---------------- 239 NH + E+ + +I DEA +P +A + G Sbjct: 466 TNHSYLVRHA-------EEIGKKKANLILDEAQNIPSVAMEQGGSVFDFDLVKIYSDTLL 518 Query: 240 ------QSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRG 293 S S L+ YRT L++ Q + + + R + G + Sbjct: 519 VSMESRISFSFEGLIRQHFLTKNEYRTILRNIQIIDHSVPFIREKF-WERYVRTKGGSKK 577 Query: 294 NLRELLANPQ-----IQRAFLLLDDTLELCYDVAKLSLGRSALL---------------- 332 E L +P ++ F + T + ++ Sbjct: 578 EFVETLLSPNKVLGLLKENFAIFLKTTKAYTELLGQMTEMKQRFFRALDAGTLDHEAVNL 637 Query: 333 --------DAAFERATLYRTRLKRLKEINQPGYSYWYECTSR----HFTLALTPLSVADK 380 + E + E W + + H L + L Sbjct: 638 LTDWFIDCEKLVESMEKWHLLEFSELEKMDETTLVWMKHSPNNPKTHLRLCFSRLEAGKY 697 Query: 381 FKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-AESLLLPSPFDYSRQALLCVLRN 439 +E + + A L + +L ++ + S FDY+ QA + Sbjct: 698 LEERVYGYFKHIVMCGALLFTKKTEDYTKDQLRLDDDVLTKRYQSEFDYAHQARAVFATD 757 Query: 440 LPQTNQ----PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPV 492 P + L L IIE + + +L S + + + Sbjct: 758 SPDLSSMLSKAEYHAYLTDALSDIIEKTSLQTLVLFNSLEDIEAVYNGLSIRGLNKKREI 817 Query: 493 LLQGETSK-GQLLQQFV-SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLL 550 L QG +L ++FV ++ ++L+ SFWEG+D+ D L L++I +LPF SPD + Sbjct: 818 LAQGVNGTPEKLKKRFVLTSSKSILLGAGSFWEGIDLPEDKLELLVITRLPFQSPDSLIN 877 Query: 551 KARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATF 610 K R + + +G +PF V LP+A + +QG GRLIR DD G+L + D+R+V + Y F Sbjct: 878 KVRYRNVQAKGHNPFSAVSLPEAALKFRQGFGRLIRTKDDHGILAVLDSRIVNKRYAHEF 937 Query: 611 LASLPPAPRTRDIA 624 +LP R + Sbjct: 938 TDTLPKDLRIDRVE 951 >UniRef50_A1WP29 Helicase c2 n=2 Tax=cellular organisms RepID=A1WP29_VEREI Length = 664 Score = 358 bits (920), Expect = 3e-97, Method: Composition-based stats. Identities = 154/635 (24%), Positives = 244/635 (38%), Gaps = 32/635 (5%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAP----ALRAKKK 65 L +PGF R Q+ M + + V+EA TG GK+ YL A+ K Sbjct: 26 ALTSVMPGFVARAQQKTMISRTLGLMTRQALGVIEAPTGIGKSMGYLIAGIASAVTEDKV 85 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYT----GNVALLKGRSNYLCLERLEQQALAGGD 121 +++ST + +LQDQL S+DLP +A +V + KGR + C ++ A D Sbjct: 86 LVVSTATASLQDQLASKDLPLALRAFALAGVCGIDVVVAKGRERHACPMKMHAFAGGTQD 145 Query: 122 LPVQILSDVILLRS---WSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 L L ++ W G V +AW + +T +C G CP + Sbjct: 146 LFAAGDDHTALTQAVDLWRQGQWAGVRDDLP-VRLHQRAWMRIANTAASCPGQKCPEFDL 204 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYF 238 C + A V++ NH L+ + + + +FDEAH L D F Sbjct: 205 CPYYATQAALKTARVIITNHDYLLSTLSNVPHSVFSDGHKC-LFVFDEAHHLSDKLLNAF 263 Query: 239 GQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLREL 298 + L + + + + ++ +D L + G + Sbjct: 264 ARRLDLAAFPSEVIEAIAQLCPGMVGLDFAAERVRGIWRACEDAALTMLGDGSQHRFTLN 323 Query: 299 LANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAF------ERATLYRTRLKRLKE- 351 PQ +R L L L K +A R ++ + Sbjct: 324 EVPPQFRRLLLDLKAQLSGMRATLKEVKESNARFRNKAVAMLADSRIGQLSGDVQEAIDC 383 Query: 352 ----INQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHH 407 + W L +P A K ++ + + + TSATL+ Sbjct: 384 IEEFTGDDLVARWLARGRNSIDLNCSPFDGARKARKHLWPVVKTGLLTSATLTTLGSFEP 443 Query: 408 FTSRLGIEQAE-SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRP--IIEANN 464 LG+ +L L SPFDY R A L V R + + P +R +AA L+ + A + Sbjct: 444 MRIALGLPAETSTLKLDSPFDYGR-ARLIVPRLCVEASDPAHSRMVAAFLKDHALGAAKH 502 Query: 465 GRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNA----LLVATSS 520 + TS +M D +LLQG+ +L++ +A ++ S Sbjct: 503 RGVLVYFTSKKLMLDCMAAIPTAQRGCILLQGQWQPWAMLEEHKRRIDAGVRSIIFGLDS 562 Query: 521 FWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQG 580 EGVD+ G+ + VI+ +LPF PDDP+L E R +G DPF + +P + Q Sbjct: 563 IGEGVDLPGEYCTRVIMTRLPFPCPDDPVLCTHAEYLRSKGKDPFHILTMPKVGLKFAQV 622 Query: 581 VGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 GRL+R D G + D RL + YGA + S P Sbjct: 623 AGRLMRREQDWGEFYVLDKRLRSKRYGAQIVKSTP 657 >UniRef50_Q1WU39 ATP-dependent helicase, DinG family n=2 Tax=Lactobacillus salivarius RepID=Q1WU39_LACS1 Length = 929 Score = 357 bits (917), Expect = 6e-97, Method: Composition-based stats. Identities = 132/684 (19%), Positives = 258/684 (37%), Gaps = 80/684 (11%) Query: 18 FKPREPQRQMAVAVTQAIEKGQP--LVVEAGTGTGKTYAYLAPALRAKKKV--IISTGSK 73 + R Q +M + + + + + +A TG GKT YL P + +IST + Sbjct: 253 LEWRSSQIKMMDDINNDLNEKKSKIYIYDAATGIGKTLGYLMPIAYKATEEKVVISTATT 312 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 LQ+QL +D+ + + + + N+ LKG +Y+ +++ Q + + L Sbjct: 313 TLQNQLVDKDISILKEVIPFNLNIVNLKGSQHYIDIDKFYQSLSIPQSKKATQIQ--MTL 370 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADV 193 W +T GD+ ++ + + L Y F+ + A++ Sbjct: 371 LVWLMETSTGDMEELNLLSMQDTIFAQIEHHGIRGLNKKSAFYSVDFLKRQEILRRHANI 430 Query: 194 VVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL--- 250 ++ NH L+ + +L V+I DEA L D + +++ Q+ + Sbjct: 431 IITNHAYLLSHV-------DKLGGNDTVLIVDEAQHLNDNLLKENRKTIDFDQIKIISDS 483 Query: 251 ------------AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQL-----------G 287 +D+ +L + + + R Sbjct: 484 LLVKMESQLSFSFRDLVEINFITKAQYTELIRPIQTIDYEIMNLREIFMTYLNSNMNKAS 543 Query: 288 EPGYRGNLRELLANPQIQRAFLLLDDTLELCY------------------------DVAK 323 + ++ L I+ + + D + Sbjct: 544 DVYVEVPIKPLNLIGMIKANLFIFKKIEKALKNLKRLQNKFSQKYSMAIVTGRLGLDEIQ 603 Query: 324 LSLGRSALLDAAFERATLYRTR-LKRLKEINQPGYS---YWYECTSRHFTLALTPLSVAD 379 L LL+ + L RL++ + + Y Y + H L L + Sbjct: 604 LINDYQKLLNLLLSEMKSWSYLDLNRLEDELETEFIWLTYPYRQENGHLRLNFIMLDGEN 663 Query: 380 KFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCVLR 438 + + QK + + A L++ + + +L + Q + + FDYS+Q +L+ Sbjct: 664 FLNDKVYQKFSTVLLVGANLAMKETRGYMFRQLDLNGQVKIKKYDNIFDYSKQTRAYILK 723 Query: 439 NLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT--LPVL 493 + P L+ L I+ +NN + +L S ++ + + + +L Sbjct: 724 DTPDITSISKKEYIEYLSHDLEKILLSNNRQTMILFNSLEIIESVYPKLVKKIGSKREIL 783 Query: 494 LQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKA 552 QG S ++ ++F+ +L+ +FWEG+D+ + L +VI+ +LPF SPD L KA Sbjct: 784 AQGITGSVEKIKKRFMLGEGKILLGAGAFWEGIDLPENNLEMVIVTRLPFQSPDTVLNKA 843 Query: 553 RMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLA 612 R +G + F + LP+A + L+QG GRLIR D+G+ V+ D+R+ + YG F++ Sbjct: 844 RYRKLEKKGINSFYNLALPEATLRLQQGWGRLIRTPKDKGIFVLLDSRIANKNYGEKFIS 903 Query: 613 SLPPAPRTRD------IARAVRFL 630 S P + + F Sbjct: 904 SFPDGVNLKSLKIDDLLKEITSFF 927 >UniRef50_A8REN5 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8REN5_9FIRM Length = 806 Score = 357 bits (916), Expect = 8e-97, Method: Composition-based stats. Identities = 123/629 (19%), Positives = 229/629 (36%), Gaps = 58/629 (9%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 P + R+ QR++A+AV + I L +A TG GKT + L P L K Sbjct: 208 VFPFPEYRKGQRKLAIAVYKTILDHDILFAQAPTGIGKTISTLFPGL------------K 255 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 A+ + + +K + Y L++L +Q L + + + LL Sbjct: 256 AIGEGKIEKIFYVCAKNITAQVA---------YDALQQLYKQNLHFKSVAITAKDKICLL 306 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTS---TNDNCLGSDCPMYKDCFVVKARKKAMD 190 + + + + + L+T + L Y C Sbjct: 307 AERNCDPQNCPYAKGYYNRNKNALYELITQHDFIDYERLVEYGKKYVVCPFELGLDACEY 366 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 +DV++ +++ V + F + + + DEAH L D A + + LS + + Sbjct: 367 SDVIIGDYNYVFDPRVYLKRFF--IDKGNYLFLVDEAHNLVDRAREMYSAELSKQDFQII 424 Query: 251 AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLL 310 I ++ K L K L + ++ +L L + A P + Sbjct: 425 KAYIPKSFAKLHKAHHHLNKQFISLRKQCEEKQLDF--------LAQKEAMPFFLQCLEK 476 Query: 311 LDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTL 370 L + L + + AL + F+ +R+ E ++ + + + Sbjct: 477 LTNELNEYLEGIHENEMEDALRELYFKAL-----HYQRIAEFYDEHFTTCIQRQKQDVWI 531 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYS 429 ++ + K ++ +K + IF SATLS + ++ + LG ++ L LPSPF Sbjct: 532 RQYCMNPSQPIKNIL-RKGRATIFFSATLSP---IDYYLTLLGGNHDSKRLSLPSPFPKE 587 Query: 430 RQALLCVLR-NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF-RAT 487 ++ + + + S + +L I NG + S+A M+ L E F ++ Sbjct: 588 HVHVMIANQISTRYRQRSQSIDAICELLYATITQRNGNYILFAPSYAYMKQLYEHFIKSY 647 Query: 488 MTLPVLLQGETSKGQ----LLQQFVSAGN---ALLVATSSFWEGVDVRGDTLSLVIIDK- 539 + V Q + + L QF + + V F EG+D++GD L VI+ Sbjct: 648 PDIDVFYQQQDMTEEEKQTFLAQFQISKHLRLYFCVCGGMFSEGIDLKGDALIGVILVGV 707 Query: 540 -LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 LP +P L++ + + + + Q GRLIR +D+G+L+ D Sbjct: 708 GLPQINPYSDLIR---QHFDEENQQGYAYAYQYPGMNKILQSAGRLIRSHEDKGILLFID 764 Query: 599 NRLVMRPYGATFLASLPPAPRTRDIARAV 627 R Y + L P Sbjct: 765 ERYTSLHYRGALPSHLHPYTIVHTPQEVR 793 >UniRef50_A6NXQ7 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A6NXQ7_9BACE Length = 684 Score = 356 bits (913), Expect = 2e-96, Method: Composition-based stats. Identities = 163/663 (24%), Positives = 267/663 (40%), Gaps = 66/663 (9%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGS 72 G + RE Q+ M+ + A+ Q +EAG G GK++ YL P L R K VII+T + Sbjct: 44 GLEMREGQQDMSFEIVDALINDQHFAIEAGVGIGKSFGYLVPVLLYSKRMNKPVIIATST 103 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 ALQ+QL+ RD+ TV L +V L KG+++YLC +R ++ P L + I Sbjct: 104 IALQEQLW-RDVHTVMPLLGLNRDVILAKGQTHYLCNKRADEYMCDPKADPPDALKEGIK 162 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDAD 192 + + V + Q + + NC + K C K R D Sbjct: 163 QGYEERKVFPEVLPQGVWDKVNVQRFSM-----KNCGSCE----KKCKYYKVRAALKFTD 213 Query: 193 VVVVNHHLFLADMVVKESGFGELIPEA--DVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 VV+ + FL ++K + + A D+++ DEAH L D + L + Sbjct: 214 GVVLCNQDFLTQHLMKLRRGQDGLINAAADLLVVDEAHNLDDKVRSATTERFGQGMLFGM 273 Query: 251 AK----------------DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN 294 K + A + L+ + A+ + N Sbjct: 274 IKSAFYELRSSDQSSVSGEKREAESAIIAFYNCLKAQVQKQINEAEQDMRYADRFFFDNN 333 Query: 295 LRELLANPQIQRAFLLLDDTLELCYDVA---KLSLGRSALLDAAFERATLYRTRLKRLKE 351 + ++ A L ++++ + S S LDA E + R+ Sbjct: 334 GSAIELLTEMNAAIHNLSSSIQIYSSMDFRNNRSFAASDDLDAVSESLSELLDRI----- 388 Query: 352 INQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATL------SVNDDL 405 W E + L P + + L I TSATL S+ + Sbjct: 389 ---DDMLIWIEQHGSNTELVYCPKNTKEIVSRLYFNGDERTILTSATLTNATSGSLEEQY 445 Query: 406 HHFTSRLGIEQAESLLL----PSPFDYSRQALLCVLRNLPQTNQP--GSARQLAAMLRPI 459 +F S G + L PSP+ Y A++ +LP + + L I Sbjct: 446 SYFISNTGFPAGDRGCLSEPKPSPYPYDEHAMIYYCDDLPHPTREHDAFIEKGVERLLEI 505 Query: 460 IEANNGRCFMLCTSHAMMRDLAEQFRAT-MTLPVLLQGETSKG-QLLQQFVSAGNALLVA 517 + +NG+ +L T+ M ++ + +L+Q S ++L +F N++L+ Sbjct: 506 LSISNGKALVLFTAKTDMEEVYSILSEKNLPYKILMQQPGSSQDKVLNEFKEDTNSVLLG 565 Query: 518 TSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITL 577 T ++WEG+ + G +LS VII +LPF P DP++ E D +V++P+ +I L Sbjct: 566 TGAYWEGISIEGKSLSNVIIFRLPFPVP-DPII----EYKCSVAKDALMDVRVPEMIIKL 620 Query: 578 KQGVGRLIRDADDRGVLVICDNRLV---MRPYGATFLASLPPAPRTRDIARAVRFLAI-P 633 KQG+GRLIR+ D G++ I D RL Y SLP RT + +F P Sbjct: 621 KQGIGRLIRNFTDTGIVCIIDRRLRDEPSERYHDITWDSLPIKNRTSSLGELRKFYEGLP 680 Query: 634 SSR 636 S++ Sbjct: 681 SAK 683 >UniRef50_Q67KS2 ATP-dependent helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67KS2_SYMTH Length = 656 Score = 355 bits (912), Expect = 2e-96, Method: Composition-based stats. Identities = 179/641 (27%), Positives = 280/641 (43%), Gaps = 51/641 (7%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKKVIISTGS 72 GF+ RE Q A + +A+ +G L+ EAG GTGKT+AYL PA+ + V++++ S Sbjct: 38 GFEVREEQIYTAFRIARALTEGSTLLAEAGPGTGKTFAYLLPAVCHARMRGRPVVVASAS 97 Query: 73 KALQDQLY--SRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 L+ QL D+ T+S+ L +V + ++Y+C ++E AG + Sbjct: 98 SVLKAQLTGPDGDIQTLSRLLNLDIDVRVAGNPADYVCEMKVE----AGDFGSGEEPEGW 153 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND-NCLGSDCPMYKDC-FVVKARKKA 188 L W+ +T G S V +D W LV+ NC CP C V R+ Sbjct: 154 SELIHWARRTGTGARSEVPGVPDD--LWELVSWDPSLNC--DTCPRRGHCLMVAARRQHR 209 Query: 189 MDADVVVVNHHLFLADMVVK----ESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 AD+VV +H LF D++ + E G ++P +IFDE H P+ + G SLS Sbjct: 210 AAADLVVCDHRLFAQDLLTRNDLLEGGMLPILPSYSAVIFDEGHHFPETWQRAQGWSLS- 268 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN-LRELLANPQ 303 T+ +Q+ + +A F L G R++ + Sbjct: 269 ----QRRLRRTLERLEYWHAREQVAWRLEAALVAADSFMQALDVHTRPGEGKRDVDRSEL 324 Query: 304 IQRAFLLLDDTLELCYDVAKLSLGRSA------LLDAAFERATLYRTRLKRLKEINQPGY 357 + +A LD L+L S L A R R L+ + +P Sbjct: 325 LLKAAARLDQALDLLQTELVTEEAMSEGQSSETELQAYQNRIDELRAALRLFR---RPES 381 Query: 358 SYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA 417 W E L + P F + + +F+SATL + LG+ + Sbjct: 382 VVWREGDE----LWVVPRRPKPLFGGDLLKPGTPVVFSSATLEP----DYQARVLGLSRF 433 Query: 418 ESLLLPSPFDYSRQALLCVLRN----LPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTS 473 + + PFD RQ+L+ + + + + + ++ A GR +L S Sbjct: 434 DQSRVGVPFDLGRQSLVYLPPDEGSGMNAAGPDAAVDAVVDEAVRVLHATGGRALILVRS 493 Query: 474 HAMMRDLAEQFRAT-MTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTL 532 A +R + A + PV+ +G+ +G L++F + +++LV FWEGVDVRG+ L Sbjct: 494 LAEVRRWRQALAAHHLPWPVIYEGDGDRGAQLERFRAEVDSVLVGAG-FWEGVDVRGEAL 552 Query: 533 SLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRG 592 S VI+ LPF DPL++ R + G DPF V LP+ +I LKQG+GRLIR A+DRG Sbjct: 553 SCVILPYLPFPE-HDPLIRERRGQAQAAGQDPFRAVDLPEMLIKLKQGMGRLIRTAEDRG 611 Query: 593 VLVICDNRLVMRPYGATFLASLPP-APRTRDIARAVRFLAI 632 V+ + D + + P A R D+A FLA Sbjct: 612 VIALLDRSYRGADWAGAVEEAFPEGARRVTDLAEVKAFLAG 652 >UniRef50_B3S2Q7 Putative uncharacterized protein n=1 Tax=Trichoplax adhaerens RepID=B3S2Q7_TRIAD Length = 702 Score = 355 bits (910), Expect = 4e-96, Method: Composition-based stats. Identities = 109/711 (15%), Positives = 213/711 (29%), Gaps = 115/711 (16%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKV---- 66 + P F P Q V Q +++G+ ++E+ TGTGKT L L ++ Sbjct: 9 IEVDFP-FNPYPCQLDYMTNVIQCLQEGKNGILESPTGTGKTLCLLCACLAWRQTYVAQV 67 Query: 67 ------------------------IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKG 102 I S+ + + Q+ + K Y + +L Sbjct: 68 QLNQRIQMQQLQQNPNTDRNMPKIIYSSRTHSQLSQVVNEL-----KHTIYRPKICILGS 122 Query: 103 RSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVT 162 R + + + + N S +E+ Sbjct: 123 REQMCIHPEVAKLQSNTAKIHACRAKVNARTCHFCNNVETKKDD--PSFSENILDIEE-- 178 Query: 163 STNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVM 222 L K C AR+ +AD+V + ++ + K + + ++ Sbjct: 179 ------LVELGGKQKVCPYYMARELRSNADIVFMPYNYLID---FKSRQSNSIDMKNAII 229 Query: 223 IFDEAHQLPDIASQYFGQSLSSRQLLDLA----------KDITIAYRTELKDTQQLQKCA 272 I DEAH L I LSS + + + I +E D ++ Sbjct: 230 ICDEAHNLEKICEDSASFDLSSADIANCIDEVDNFINILQRIKSTTDSEEYDATGMRCNV 289 Query: 273 DRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF-LLLDDTLELCYDVAKLSLGRSAL 331 + L R + ++L + + F +L ++ +K + Sbjct: 290 NNL--YCLTMRYVIESSYIYEIFKQLNVTFETKHLFVQVLGKCIDATVSDSKTLRAKHFG 347 Query: 332 LDAAFERATLYRTRLKRLKEINQPGY---SYWYECTSRHFT------LALTPLSVADKFK 382 L+ + T+ L N Y + E +++ L+ S + K Sbjct: 348 LEKVLDILTVIFLDLSSGSSSNSQRYYKVIIYIETLIDYYSSNCCRILSYWCFSPSYSMK 407 Query: 383 ELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLP- 441 EL+ Q+ + I TS TLS + + + L P D +Q + + P Sbjct: 408 ELIDQEVRAVILTSGTLSPIES---LVAEFQVSFPVQLQNPHVID-KKQIWIGTVSKGPC 463 Query: 442 ---------QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPV 492 + L + + S+ +M E ++++ Sbjct: 464 GTALNSSYRNRSSAEYLSSLGNTIVNFARIIPDGLLVFFPSYPVMNSCIEHWQSSGIWDR 523 Query: 493 LL---------QGETSKGQLLQQF------VSAGNALL--VATSSFWEGVDVRGDTLSLV 535 + Q ++ +++ ++ + A+ V EGVD V Sbjct: 524 ICQHKSLHIEPQHKSEFNRVMDEYYSSVRDENCSGAIFLGVCRGKVSEGVDFADINGRAV 583 Query: 536 IIDKLPFTSPDDPLLKARMEDCRLRGGDPF--------DEVQLPDAVITLKQGVGRLIRD 587 II LPF + + +M+ F + A + Q +GR+IR Sbjct: 584 IITGLPFPPSKEAKVMLKMQYLDEN--IGFKEHKSICGRDWYRQQASRAVNQAIGRVIRH 641 Query: 588 ADDRGVLVICDNRLVMRPYGATFLASLPPAPRTR-----DIARAVRFLAIP 633 +D G +++CD R + + L + F + Sbjct: 642 RNDYGAIILCDERFNQKDSISQLPKWLKDYVQAYGSFGLTQKSLKDFFSTA 692 >UniRef50_C0X4L0 DNA-directed DNA polymerase III epsilon subunit n=37 Tax=Bacilli RepID=C0X4L0_ENTFA Length = 820 Score = 354 bits (909), Expect = 5e-96, Method: Composition-based stats. Identities = 119/650 (18%), Positives = 237/650 (36%), Gaps = 64/650 (9%) Query: 3 DDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA 62 + P + R+ QR++AVAV + I Q L VEA TGTGKT + L PA+ Sbjct: 202 RILRNKSLKNLSFPYGEYRKGQRELAVAVYKTILSKQRLFVEAPTGTGKTMSTLFPAM-- 259 Query: 63 KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL 122 KA+ ++ R +K + +K L ++ + Sbjct: 260 ----------KAIGEEEGERIFYLTAKTITRQVAEDAVKA---------LSEKQAQTKSI 300 Query: 123 PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND---NCLGSDCPMYKDC 179 + + L + + + W L+ N + ++ C Sbjct: 301 TLTAKDKICFLTERNCTPEHCPFADGYYDRLNEGLWDLLQHENHLTREVIERYAQKHQLC 360 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIP-EADVMIFDEAHQLPDIASQYF 238 + ++ D+++ +++ V F E E ++ + DE H L + + + + Sbjct: 361 PFELSLDASLWCDLIIGDYNYLFDPTVYLRRFFEEPQSAEENIFLVDETHNLVNRSREMY 420 Query: 239 GQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLREL 298 ++S +L + K + K++ QL++ ++ + D E + Sbjct: 421 SAAISRNAVLQIQKRLQ-------KESVQLKRACQKVLTTFDDIEAICEEKDTDFFAQRA 473 Query: 299 LANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYS 358 + +++ L + + + +++L F+ + R+ E G+ Sbjct: 474 PIDSLVKQ-IHRLTEVIAEWLPENQHIEELASILSFYFDCLSYL-----RISEYYDNGFY 527 Query: 359 YWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQA 417 + + + A + + K + I SA+L+ L+++ LG E++ Sbjct: 528 TSISLRNYDCVVKQFCVDPAYLLSQRL-DKGKASILFSASLTP---LNYYQEVLGGGEES 583 Query: 418 ESLLLPSPFDYSRQALLCVLRNL--PQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 +P PF Q LL + +L N+ S Q++ +L + E G + S+A Sbjct: 584 LRYRIPYPFPEENQ-LLMIGSHLQTTYKNREKSYPQISELLGKLSETKTGNYLIFFPSYA 642 Query: 476 MMRDLAEQFRATMT-LPVLLQG----ETSKGQLLQQFVSAGN----ALLVATSSFWEGVD 526 M D+ + F + +QG E + L +F V F EG+D Sbjct: 643 YMDDVYQVFSQRYPQVKTQIQGTDLNEKEREAFLAEFKENPQETFIGFCVLGGIFSEGID 702 Query: 527 VRGDTLSLVIID--KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRL 584 ++G L II LP +P+ L++ + G F + + Q GR+ Sbjct: 703 LKGTRLIGTIIVSVGLPQMNPEQELIRT---FYQEERGQGFQFAYQIPGMNKVLQAAGRV 759 Query: 585 IRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD----IARAVRFL 630 IRDA D+G +++ D R + F + + I + +F Sbjct: 760 IRDARDKGFVLLLDERFELPSVQRFFPPHWLAYRKAKTNEQLIQQVKQFW 809 >UniRef50_UPI0001C355EC helicase c2 n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C355EC Length = 765 Score = 354 bits (908), Expect = 7e-96, Method: Composition-based stats. Identities = 151/656 (23%), Positives = 268/656 (40%), Gaps = 51/656 (7%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK------KKVIIST 70 G R+ Q+++A+++ +A+++ + + EA GTGKT+AY+ +IST Sbjct: 118 GMAKRKSQKELALSMLRALQENKLALCEAEVGTGKTHAYILAVTIHNLFSQSKTPTMIST 177 Query: 71 GSKALQDQLYSRDLPTVSKAL------KYTGNVALLKGRSNYLCLERLE--QQALAGGDL 122 + ALQ+ + +P +S+ L + + KG+S+++C RL+ + ++ + Sbjct: 178 STIALQEAITKEYIPQISRILLEHRIIDKPLSFVVRKGKSHFVCDSRLKTYESSIRNQNR 237 Query: 123 PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV- 181 P L W Q D+ + + C CP C Sbjct: 238 PEDQGLLAQLGELWREQEHYLDLDGFPLTPY---VKERINVS--QC-SEFCPHSSYCRFA 291 Query: 182 -VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 R + D + NH+ LAD+V + G +L+P ++ +FDEAH+L D A Q + Sbjct: 292 SFSRRWLSESYDFQISNHNYILADVVNRREGKKKLLPYYNIAVFDEAHKLIDAARQIYCT 351 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 LS ++ L I+ + +Q+ + L++ + G + N E ++ Sbjct: 352 RLSENEIPKLIHLISPERFVDKSSQRQMMELCTGLSEKNTRLFQKTGGAFIQSNQMENIS 411 Query: 301 --NPQIQRAFLLLDDTLELCYDVAKLSLGRSAL----LDAAFERATLYRTRLKRLKEINQ 354 + + L + D + + + ++ + + A RL Q Sbjct: 412 RTIEEDRSTRLWIRDLIGMLEKLGRIFVTVKMDSCGRVKTIRNTAQSIEDRLNVFLSAKQ 471 Query: 355 PGYSYWYEC-TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG 413 W E S P + + I TS T+SV + HF G Sbjct: 472 N--ISWIEKSDSGGLEFCSLPRELERILYHDLWHTGVHSIITSGTISVGGNFDHFKRMTG 529 Query: 414 IE-----QAESLLLP--SPFDYSRQALLCVLRNLPQTN--QPGSARQLAAMLRPIIEANN 464 I+ + + SPF+YS+ A+L + LP + ++ + +I A Sbjct: 530 IDLLQPQNRRVMEVSKLSPFNYSQNAILYIPEELPFPDIHDEKYIEAISREIIHLICATF 589 Query: 465 GRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEG 524 G +L +S+ +M + + + + L + + ++++F +GN +L A+ S EG Sbjct: 590 GHTLILFSSYWLMERIFYEVKQEIQSFPLFIMKRGRMDMIEKFRRSGNGVLFASDSAGEG 649 Query: 525 VDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQ----LPDAVITLKQG 580 +D+ GD LS VII KLPF P P+L+ D F + P +I L+Q Sbjct: 650 IDLPGDILSSVIIVKLPFPVP-SPILE-----YERTKYDDFSQYVKEIITPGMIIKLRQW 703 Query: 581 VGRLIRDADDRGVLVICDNRL-VMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 GR IR D V I D+R+ + Y L +LP P T I RF+A + Sbjct: 704 FGRGIRRETDTAVFSILDSRVGIHGRYRDDVLKALPDMPVTGRIEEIRRFIAEKKT 759 >UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03S23_LACBA Length = 948 Score = 353 bits (905), Expect = 2e-95, Method: Composition-based stats. Identities = 158/694 (22%), Positives = 274/694 (39%), Gaps = 82/694 (11%) Query: 16 PGFKPREPQRQMAVAVTQAIEKG-----QPLVVEAGTGTGKTYAYLAPALR---AKKKVI 67 + R Q +M + + + ++VEA TG GK+ YL P + V+ Sbjct: 253 ENLEWRPEQAKMMNYIYNNYAEADRHPVKHMIVEAPTGIGKSLGYLLPMAYLGQTGRPVV 312 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 +ST + LQ+QL + +P +++ + +T N L+KG +YL L+R L + Q Sbjct: 313 VSTATTLLQEQLLDQTIPLLNQIVPFTVNAVLVKGSRHYLDLQRFA-TTLNVAETSKQTQ 371 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 + L W T GD+ + + + + D P Y D F+ + + Sbjct: 372 LLKLRLLVWLTMTTTGDLDELHLATYRAPYFQEIVHEGAVTV--DNPFYDDDFIRRRDHR 429 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 A V++VNH + + ++ DEA L + + + QL Sbjct: 430 MAQAQVIIVNHAYLSEHALALGEQLQQ-----PYLVIDEAQHLTESTLKQRRTQVKFAQL 484 Query: 248 L--------DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLR--- 296 L D+ ++I + Q RL ++Q QL LR Sbjct: 485 LNELHHIQRDINREIGPSLLRLFAADTQATLTLHRLLSASQTLETQLTTLVDHLFLRFLA 544 Query: 297 ----------------------ELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSA---- 330 E+ + I RA + DD L + + + A Sbjct: 545 NKRLNNHNQVIEELVSAQALTEEIDRSRTIDRATMATDDLLAGLNALRQRYDQQQAQFTS 604 Query: 331 ----LLDAAFERATLYRTRLKRLKEINQ------PGYSYWYEC----TSRHFTLALTPLS 376 L + R L+ ++ +L EI + P +W LA L+ Sbjct: 605 AERYLFEQVNTRVHLFDDQMGQLLEILRQVVDQAPASLFWLTMNHVGDRTSLQLASGLLA 664 Query: 377 VADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL--LLPSPFDYSRQALL 434 + + + T ATL + + + +++ +++ + S FDY +QA L Sbjct: 665 TEGFLSQHLYAGFQPVLLTGATLFSSGRSQYVLDQFDLQREQTVTHRMRSSFDYGKQAQL 724 Query: 435 CVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF---RATM 488 + + P ++ L+A + I A N + +L S +++ + +Q Sbjct: 725 LMADSGPNLSRVAPADYVTYLSAAISQIAGAVNKQTLILFNSLSVIEQVYQQLVTQPEFA 784 Query: 489 TLPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 + QG S+ ++ ++F ++ A+L+ +SFWEG+D+ + L L+I+ +LPF SPD Sbjct: 785 RRDIFAQGVSGSRERITKRFATSHGAILLGAASFWEGIDLPSEQLELLIVTRLPFDSPDR 844 Query: 548 PLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 +KA G +PF LP A + L+QG+GRLIR D G +VI D RLV R YG Sbjct: 845 VFVKANYARLEAAGKNPFYNAALPAATLKLRQGIGRLIRTPHDYGAVVILDQRLVERQYG 904 Query: 608 ATFLASLPPA--PRTRDIARAVR----FLAIPSS 635 + L +LP T DI + F + Sbjct: 905 QSILRALPAELPKTTGDIGTLTQGLINFFEKKPA 938 >UniRef50_UPI0001AF4745 hypothetical protein MkanA1_08668 n=1 Tax=Mycobacterium kansasii ATCC 12478 RepID=UPI0001AF4745 Length = 1746 Score = 352 bits (904), Expect = 2e-95, Method: Composition-based stats. Identities = 167/663 (25%), Positives = 266/663 (40%), Gaps = 65/663 (9%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL----RAKKKVIISTGSK 73 +PRE Q++MA AV + G L VEA TGTGK+ AYL PA+ R + V+I+T +K Sbjct: 331 LRPREAQQEMARAVADVFDHGGRLAVEAPTGTGKSLAYLLPAIGRASRPGQPVVIATATK 390 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 LQ QL L ++G +NY+C LE P+ + + + Sbjct: 391 TLQGQLRVEATRLHDDGL-LGAPFRQIQGVANYVCTRELEDALSDRESSPLALAVALRAI 449 Query: 134 RSWSNQTVDGDISTCVSVAED--SQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDA 191 + T D + + ++ + + C + C + C + + A Sbjct: 450 AASPTGTWDDVTDDVIRRRDTRYARTRARLRTNAGGCDRTKCVWAQVCPMTQQLNGLDKA 509 Query: 192 DVVV-VNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 VV VNH L + + + L ++FDEAH L D + + + + + +L L Sbjct: 510 PGVVSVNHALIASWVKTDHAPGDVLTESRADLVFDEAHGLEDSLTAAWTERVDALELDIL 569 Query: 251 AKD--------------------ITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPG 290 T A + + Q++ LAQ+ + + + Sbjct: 570 VNSLSPRSKLMRGIRSRAGTDTSFTEASQAITTSSTQVRSSGAELAQAIETYLHEYAGKS 629 Query: 291 YRGNLRELLANP------------QIQRAFLLLDDTLELCYDVAKLSLGRSAL---LDAA 335 LR + N ++ + L + G + L Sbjct: 630 DSVVLRTGVVNSRPEFRVLRQAATAVRYWLIQLAKAVTALSQSLAGVNGTGSARRRLRGY 689 Query: 336 FERATLYRTRLKRLKEINQPG-YSYWYECTSRH---FTLALTPLSVADKFKELMAQKPGS 391 ER L ++E+ + Y +T P+ V +F++L+ + S Sbjct: 690 SERLDAAIELLDTMRELPDGHLWVYRLAAEEDDPAAWTYERIPVHVFPEFEQLVVDRTHS 749 Query: 392 WIFTSATLSVNDDLHHFTSRLGIE--------QAESLLLPSPFDYSRQALLCVLRNLPQT 443 + SATL+V SRLGI L LPSPFDYS+Q+L+ + +LP Sbjct: 750 TVLCSATLTVQHRFDFIASRLGIGIAADPDGAGFRGLRLPSPFDYSKQSLVILTNHLPVP 809 Query: 444 ---NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR------ATMTLPVLL 494 N+ ++AA + + G+ L + M +A R A + +L+ Sbjct: 810 IPVNEREFCEEMAADQTGFLSLSGGKTLTLFAARTRMEAVAAGVRIRAAELAQRGVELLV 869 Query: 495 QGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARM 554 QG+ + Q+ ++F +L S+WEG D G+TLS + I+K P+ PDDPL+ AR Sbjct: 870 QGDQGRSQIQRRFRDEPGTVLYGLRSYWEGFDAPGETLSYLFIEKPPYPHPDDPLISARQ 929 Query: 555 EDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPY-GATFLAS 613 RG DPF + LP + QG GRLIR DRG ++CD RL L S Sbjct: 930 RAIADRGDDPFLDYVLPMTAMQFAQGFGRLIRSETDRGAALVCDRRLHSPTQAQRVILDS 989 Query: 614 LPP 616 LP Sbjct: 990 LPN 992 >UniRef50_B8FYP7 DEAD_2 domain protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FYP7_DESHD Length = 774 Score = 352 bits (903), Expect = 3e-95, Method: Composition-based stats. Identities = 125/636 (19%), Positives = 226/636 (35%), Gaps = 64/636 (10%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P R+ QR++ VAV + I++ L V+A TG GKT + PAL+ Sbjct: 186 FPYPAYRKGQRELVVAVYKTIKEKHKLYVQAPTGIGKTLGTIFPALKC------------ 233 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 L + L + +K + T L L+QQ L+ + + V Sbjct: 234 LLEGLETPIFYLTAKTITRTVAEGSL---------LMLQQQGLSLKRVTLTAKDKVCFCP 284 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDN-CLGSDC-PMYKDCFVVKARKKAMDAD 192 D + + + N +C + C + + AD Sbjct: 285 ECECTPEDCSYAKGYYDRLGPALEDIFERDHWNREQIENCARNHGVCPFEFSLELTNWAD 344 Query: 193 VVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAK 252 +V+ +++ V + F E + DEAH L + A + F L+ + L L Sbjct: 345 LVICDYNYVFDPRVFLKRFFLEG--GDYAFLIDEAHNLVERAREMFSAQLNKEEFLHLKN 402 Query: 253 DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLD 312 + K Q + K +L + +G E A + + + Sbjct: 403 LVEDQEPVLGKRLQTVNKNFLKLKK--------------QGLEVEKDAPTALYSSLERVV 448 Query: 313 DTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLAL 372 + E + + + L + F T E Y +Y+ + + L Sbjct: 449 NEAEKFFKKEETPPWKEKLTELYFNIQAFLHT-----AESYDEHYLTYYQYPEQDVRVKL 503 Query: 373 TPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQ 431 + + + +++ K + +F SATLS L +F LG E ++ L LPSPF + Sbjct: 504 FCVDPSQQLAQVL-NKGRAAVFFSATLSP---LEYFIQVLGGEKESYKLQLPSPFPHENL 559 Query: 432 ALLCVLR-NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF-RATMT 489 L+ + + + S + + +++ G + S+ + + E+ +A Sbjct: 560 CLMLQKQISTKYNQRSLSLDPIVEGITQLVQGKTGNYLVYFPSYEYLERVRERLLQAHPE 619 Query: 490 LPVLLQG----ETSKGQLLQQFVSAGNALLVA----TSSFWEGVDVRGDTLSLVII--DK 539 VL Q E + + L+ F LV F EG+D+ G+ LS +I Sbjct: 620 FKVLTQTMGMTEADREEFLEAFQEEPRESLVGLALLGGIFGEGIDLTGERLSGAVIIGVG 679 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LP + +++A + R G F+ + + + Q GR+IR DRG +++ D Sbjct: 680 LPQIGTERDIIRA---HFQERYGQGFEFAYMYPGMNKVLQACGRVIRTEQDRGAILLIDE 736 Query: 600 RLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 R Y F +D +R L Sbjct: 737 RFARLSYRRLFPKEWHAIHTLQDNSRIPSLLKAFWE 772 >UniRef50_A7GAR7 Putative ATP-dependent helicase n=11 Tax=Clostridiales RepID=A7GAR7_CLOBL Length = 784 Score = 352 bits (903), Expect = 3e-95, Method: Composition-based stats. Identities = 108/631 (17%), Positives = 224/631 (35%), Gaps = 60/631 (9%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P + RE QR++AV+V + I + + + +EA TG GKT + + P++ KA Sbjct: 194 FPFKEYREGQRKLAVSVYKTISENKNIFIEAPTGIGKTISTIFPSI------------KA 241 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 + + + +K ++ K N ++ + + L Sbjct: 242 IGEGKIDKIFYLTAKNTTRDFVLSNFKNMVNRGMAFKVI---------TLISKEKICLKE 292 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTST---NDNCLGSDCPMYKDCFVVKARKKAMDA 191 + + + + + ++ + ++ + +K C + ++ Sbjct: 293 EFKCSSEKCEFAKGHFDRINEAILDILNNENIIDETVIKKYALKHKVCPFEFSLDISLWC 352 Query: 192 DVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLA 251 D ++ +++ D V F + V++ DEAH L D + + F S+S +L L Sbjct: 353 DGIICDYNYVF-DPRVHLRRFFSDGKDDFVLLIDEAHNLLDRSREMFSSSISKNNVLSLR 411 Query: 252 KDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLL 311 K I + + ++ K + + + + E ++Q Sbjct: 412 KSIKDKSKALYRILGKINKELLDIKKIYEVDNYYM----------EKEKPEKLQILLNNF 461 Query: 312 DDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLA 371 +E+ + LL+ FE + + E+ Y + E + FT+ Sbjct: 462 TAEIEVLMMKGNFQID-DELLNFYFEALYFLK-----ICELYGDNYITYGEEYNSDFTIK 515 Query: 372 LTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-AESLLLPSPFDYSR 430 L + + E++ +K + IF S T S + +F LG + L L SPF Sbjct: 516 LFAIDTSGLLNEIL-KKSKANIFFSGTFSP---IKYFREVLGGDDEDYVLKLNSPFPIEN 571 Query: 431 QALLCVLR-NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT 489 +L + N+ S + + + G + S+ M+++ ++ Sbjct: 572 HRILIGYNVSTKYKNRCKSYENICDYINMACKIKKGNYMVFFPSYKYMKEVFLLYKEKYP 631 Query: 490 LP-VLLQ----GETSKGQLLQQFVSAGN---ALLVATSSFWEGVDVRGDTLSLVIIDK-- 539 V++Q + + + + +F V F EG+D+ GD + II Sbjct: 632 EENVIVQNSSMSDEEREEFIDKFEKEAENVIGFCVLGGIFSEGIDLTGDKIIGAIIIGVG 691 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 LP + L+K + F + + + Q GR+IR D+G++++ D Sbjct: 692 LPQICVERNLIK---NYYDDKKQSGFQYSYIYPGMTKVMQAAGRVIRTELDKGIILLIDE 748 Query: 600 RLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 R Y F P ++ L Sbjct: 749 RFNSYSYKEIFPKHWYPNINVKNEKELEGAL 779 >UniRef50_A6TUM0 Helicase c2 n=3 Tax=Clostridiales RepID=A6TUM0_ALKMQ Length = 657 Score = 350 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 161/633 (25%), Positives = 288/633 (45%), Gaps = 42/633 (6%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKKVIISTGS 72 G++ RE Q A + A+ + + EAG GTGKT+AYL A+ K V+I+ S Sbjct: 37 GYEVREEQIFTAFQLADAVCNKKVHLAEAGLGTGKTFAYLLTAIAYARFSGKPVVIACAS 96 Query: 73 KALQDQLY--SRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 ALQ+QL D+ T+S L + + K Y+C R+++ + + ++ Sbjct: 97 TALQEQLAGPKGDIQTLSDILGLEIDARMAKDPRQYICDARVDESRGLFTEKSNAMSNE- 155 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVT-STNDNCLGSDCPMYKDCFVVKARKKAM 189 + W +T G+ S V + + W + + +C C C +VKAR+ Sbjct: 156 --INQWLAKTNRGERSEMPLVPD--RVWKQIGWDESMSC--DMCSSRGFCKLVKAREHYR 209 Query: 190 DA-DVVVVNHHLFLADMVVKES----GFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 A D+++ +H +F D+ ++ G ++P +IFDE H++ A+ G+ + Sbjct: 210 PARDLIIADHEVFFDDLWTRDEQIDGGKSPILPSYSAVIFDEGHKVMLPAAMRAGKQIIK 269 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQL------GEPGYRGNLREL 298 + ++ ++ L A L Q++ DF ++L EP R LR Sbjct: 270 EDIDNII----LSLEEIQGARDSLISIAVDLEQTSSDFFIKLNRCVIADEPSDRLALR-- 323 Query: 299 LANPQIQRAFLLLDDTLELCYDVAKLSLGRSA-----LLDAAFERATLYRTRLKRLKEIN 353 + + + A D L +++ + LL + L R Sbjct: 324 VDDKLFKAADTFYKDLDRLLFEIQVEQELYTESLPASLLHTYETQIERSMMALDRFCRNK 383 Query: 354 QPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG 413 W + F + P ++ + QK +FTSATLS D +FT LG Sbjct: 384 SRDVITWVDQMDGSF--WVVPRELSKMLDIHLFQKGLPVVFTSATLSNEGDFSYFTRTLG 441 Query: 414 IEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTS 473 +++ + SPFD Q ++ + + +++ L +++ N G +L +S Sbjct: 442 LKKTSCSTVESPFDIEEQVVVHLPQPSSNSHEDIGFSLGIEGLVSLLKLNGGGALVLTSS 501 Query: 474 HAMMRDLAEQFRA-TMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTL 532 +R + + F+ + VL + + +G L+++F +++L+ T SFWEG+D+ G+ L Sbjct: 502 LDEVRKIRKGFKDYQLPFEVLWEDKGERGYLVRKFREEVSSVLIGT-SFWEGIDIPGEAL 560 Query: 533 SLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRG 592 SLV++ +LPF S DPL++ + E+ + G DP V P+ + LKQG GRLIR DDRG Sbjct: 561 SLVVVWQLPFPSL-DPLIEVQREEAKKEGLDPKVTVDYPEMGLKLKQGCGRLIRTKDDRG 619 Query: 593 VLVICDNRLVMRPYGATFLASLPPAPRTRDIAR 625 +VI ++ ++ P+ + +LPP + R + Sbjct: 620 AIVIMES-IIGEPWEEVVMGALPPGAKIRAVED 651 >UniRef50_C7RHR2 DEAD_2 domain protein n=4 Tax=Anaerococcus RepID=C7RHR2_ANAPD Length = 777 Score = 350 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 228/638 (35%), Gaps = 56/638 (8%) Query: 12 AKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTG 71 A P + R+ QR+MAVAV AI K + L V+A TG GKT + + P++ Sbjct: 180 ALNFPYGEYRKGQRKMAVAVYTAILKEKNLFVDAPTGIGKTISSIFPSI----------- 228 Query: 72 SKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVI 131 K++ + L + +K G+ L+ LE+ L + + + Sbjct: 229 -KSIGEDLSDKIFYLTAKTTT---------GKEAIKSLKLLEENGLKIKAVQITSKERIC 278 Query: 132 LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTST---NDNCLGSDCPMYKDCFVVKARKKA 188 L D + + ++T + + + S Y+ C + A Sbjct: 279 LNDEVRCNPDDCPFAKGHFDRVNDALKDILTKETIMDYDIITSYAERYRVCPLEFEFDIA 338 Query: 189 MDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL 248 +D ++ +++ D V F E I + + DEAH L D A + S Sbjct: 339 SYSDFIICDYNYVF-DPTVFLRRFFEEISSRYIFLIDEAHNLLDRARDMYSFSFKDSDFK 397 Query: 249 DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF 308 +L D + +K L ++ +F + G + + + + Sbjct: 398 ELR---------ACFDINKHKKIIKVLDEAILNFENNYEKYGKKLHYYTKNHIDSLDKIL 448 Query: 309 LLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF 368 L L +E K +L+ F + + + ++ + Sbjct: 449 LELAKKMEKFLIEEKDDRNYDYVLEMYFNINSYLKISDYFMDGFYN---VISFDEENEDK 505 Query: 369 TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDY 428 + + + K+ S IF SATLS + F + LG + L L PF Sbjct: 506 IFEIKCVDPSHILKKK-YDYARSTIFFSATLSP---MPFFMNMLGARDSLKLRLDMPFSS 561 Query: 429 SRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 +L + ++ + ++ ++ I + G F+ S + + +A + Sbjct: 562 ENLIILQKSISTRYRDRSRNVSLISDLINEFINSKEGNYFIFFPSFSYLEAVAGDYTVRY 621 Query: 489 TLPVLLQGET----SKGQLLQQFVSAGN--ALLVATSSFWEGVDVRGDTL--SLVIIDKL 540 + +L+Q + + + +++F N A +V F EGVD+ GD L S++I + Sbjct: 622 SDDILIQDRSMSQLDRSKFIKKFTEESNEVAFVVLGGIFSEGVDLIGDRLIGSMIISVGM 681 Query: 541 PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR 600 P S D L+K E G FD + + Q GR+IR DDRG++ + D+R Sbjct: 682 PGVSFDRNLIK---EHFDREGLSGFDYSYTFPGINKVFQAAGRVIRSEDDRGIIYLVDDR 738 Query: 601 LVMRPYGATFLASLPPAPRTRDIARAV----RFLAIPS 634 Y F +F + Sbjct: 739 YSWNQYQMLFPKHWNSIKYLNQSEELKNITDKFWSKNE 776 >UniRef50_B0G3G8 Putative uncharacterized protein n=16 Tax=Bacteria RepID=B0G3G8_9FIRM Length = 805 Score = 350 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 124/638 (19%), Positives = 218/638 (34%), Gaps = 79/638 (12%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P F RE Q+ + +V + I + + L ++A TG GKT A L PA+ KA Sbjct: 190 FP-FAYREGQKNLVTSVYRTILRKKKLFIQAPTGVGKTIATLFPAV------------KA 236 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 + + L + +K + T E L +QAL + + + Sbjct: 237 VGEGLGDKIFYLTAKTITRTVAW---------QAFETLREQALRMKVIVLTAKDKICFCE 287 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTSTND---NCLGSDCPMYKDCFVVKARKKAMDA 191 + + + + L+TS+++ L +K C + A+ Sbjct: 288 ETNCNPDYCPYAKGHFDRVNDAVYELLTSSDELNREILEEQARKWKVCPYEMSLDVAVWV 347 Query: 192 DVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLA 251 D ++ +++ FGE + + DEAH L + Q + S+ L + Sbjct: 348 DAIICDYNYVFDPQAHLRRFFGEGNKGDYLFLIDEAHNLVERGRQMYSASICKEDFLGIK 407 Query: 252 KDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLL 311 K + + + + + + +++ + L + I L L Sbjct: 408 KKVRYEDEKLTERLEDCNRGLLAMKRECEEY-------------KVLNSVSHIYLKLLNL 454 Query: 312 DDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH-FTL 370 LE + + R +L+ F + + E Y + E F + Sbjct: 455 VTELERFLEECEKEDIREEVLEFYFHIRSFM-----DIHERLDENYVIYSELDGEGKFRV 509 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYS 429 L ++ A E + QK S IF SATL + ++ L ++ ++ SPFD Sbjct: 510 HLFCVNPAGNLGEFL-QKGNSTIFFSATLLP---ITYYKKLLSTGKEDYAIYAESPFDVE 565 Query: 430 RQALLC---VLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA 486 + L+ V + N+ R A L + G + S+ + D+ E F Sbjct: 566 HRLLMVGGDVSTKYTRRNEEMYQR-YARYLWKLANGKKGNYLVFFPSYRFLEDVYEAFEK 624 Query: 487 TMTLPVLL-----------------QGETSKGQLLQQFVSAGN----ALLVATSSFWEGV 525 L E + + L F V F EG+ Sbjct: 625 IQEKEELEAFPALGHRITCVTQSQSMSEKGREEFLNTFEEERKESLLGFCVMGGIFSEGI 684 Query: 526 DVRGDTLSLVIID--KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGR 583 D+ D L +I LP + +LK + G FD L + + Q GR Sbjct: 685 DLTEDKLIGAVIVGTGLPQVCREREILK---DYFDQHGQRGFDYAYLYPGMNKVLQAAGR 741 Query: 584 LIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTR 621 +IR +DRGV+++ D+R R Y TF Sbjct: 742 VIRTDEDRGVILLLDDRFFDRRYQETFPREWENQRSCS 779 >UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_LACRG Length = 933 Score = 348 bits (894), Expect = 3e-94, Method: Composition-based stats. Identities = 153/669 (22%), Positives = 254/669 (37%), Gaps = 79/669 (11%) Query: 16 PGFKPREPQRQMAVAV-TQAIEKGQPLVVEAGTGTGKTYAYLAPALR---AKKKVIISTG 71 P ++ R+ Q +M A+ T A + PL +EAGTG GKT YL P ++K++++T Sbjct: 248 PRYRFRKAQAKMMDAIFTHAQKTEIPLFIEAGTGLGKTLGYLLPYAYLATPEQKLVVATS 307 Query: 72 SKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVI 131 + LQ QL ++ +P + L T LK +YL L + +L Q + Sbjct: 308 TLVLQTQLITQAIPELDALLGRTLPTVELKSPQHYLDLNKFA-ASLHQEGPTRQTQLLQM 366 Query: 132 LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDA 191 L W QT GD+ + + + + D P Y F + + K DA Sbjct: 367 KLLVWLTQTTTGDLDELHLTTYRAPLFAEIRHSGDVGTPFINPFYTFDFYRRLQAKLADA 426 Query: 192 DVVVVNHHLFLADMVVKESGFGELIP-EADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 VVV NH S + +P + ++ DEA D + F + ++ L Sbjct: 427 VVVVTNHAFL--------SRHADTLPFKRPFLVVDEAQHFADNTAAAFARRVALDHLNHQ 478 Query: 251 AKD----------------------ITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE 288 + + + + + L + Sbjct: 479 LHRVWQLSEPDERHSLTAIYQSEPAMLTVLQQLNQQAATAETAVNTLQRQIHRHFFFGKT 538 Query: 289 PGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFER---------- 338 G + L + + T++ V + L A F R Sbjct: 539 TAASGFVNLSLDSAAAKWLEQTQTATIKSLIKVLGRLTVTTDKLTADFNRRPHFFLKSDG 598 Query: 339 -------------------ATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTP--LSV 377 +RL L S + +L L+ V Sbjct: 599 QQFQALAALRIALADHRQLLQELLSRLPDLIAGQAVIMSVNLRQITDVASLELSWDVFQV 658 Query: 378 ADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG---IEQAESLLLPSPFDYSRQALL 434 ++L+ + +F ATL+ T++LG + ++ L L SPF Y QA + Sbjct: 659 GSAVQQLIH-HFEAPVFVGATLTAERSFDFLTAQLGYHELPESSFLKLRSPFHYRDQAKV 717 Query: 435 CVLRNLP---QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT---M 488 V + P + A LA + + + N + +L S +++ + ++ Sbjct: 718 LVATDAPHAADVSDDAYADYLAMAIEQLAD-NQYQTIVLFNSLSVIEAVYQRLIHRPIAG 776 Query: 489 TLPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 +L QG S ++ ++F +LL+ +SF+EG+D L +VI+ +LPF +P+ Sbjct: 777 HKELLAQGVTGSAEKIAKRFAVGEQSLLLGAASFFEGIDYPDRLLEIVILTRLPFDAPEA 836 Query: 548 PLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 P+ KAR +L GGDPF E LP A++ L+Q GRLIR DRG +I D R + YG Sbjct: 837 PITKARYRQIQLSGGDPFTEDALPRAILRLRQSFGRLIRTETDRGAFIILDPRFITTAYG 896 Query: 608 ATFLASLPP 616 SLP Sbjct: 897 KKMQKSLPN 905 >UniRef50_Q73F47 ATP-dependent helicase, DinG family, putative n=1 Tax=Bacillus cereus ATCC 10987 RepID=Q73F47_BACC1 Length = 915 Score = 347 bits (891), Expect = 7e-94, Method: Composition-based stats. Identities = 156/664 (23%), Positives = 272/664 (40%), Gaps = 60/664 (9%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEK-GQPLVVEAGTGTGKTYAYLAPA 59 + D F +L K R Q QMA+ + + +E + +++EA GTGK+ L P Sbjct: 8 ILDIFEE--KLIKHYGTSIIRASQLQMALDIGEFLESSKRVMIIEAPVGTGKSLGALVPV 65 Query: 60 LRAK-------KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERL 112 L + + V+ +T + LQ QL ++P + K L N + KG+S+Y C R+ Sbjct: 66 LVDRKYNTFDKRNVMYATATINLQGQLMRSEIPLLRK-LGLVNNPIVAKGKSHYYCHFRM 124 Query: 113 EQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTC---VSVAEDSQAWPLVT-STNDNC 168 + + + +D +L + + G S + + W V S NC Sbjct: 125 KNSSQKIENELFS-RTDQHVLEKFFRLSKTGQRSELEEEHGFNIEDKKWKRVELSNKSNC 183 Query: 169 LGSDCPMYKDCF--VVKARKKAMDADVVVVNH----HLFLADMVVKESGFGELIPEADVM 222 C C + + R KA++ DVV+ NH + FL M + L + ++ Sbjct: 184 --RACQFSMVCPTIIHRRRFKAIENDVVITNHDQLINSFLNAMDMDSIYEPVLKTDMGLV 241 Query: 223 IFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDF 282 I DEAH + ++ + L +L K I +D + +K DRL + Sbjct: 242 IIDEAHDFLETFIGRLEKTFTLSYLRNLEKYIE-------RDNYKWKKAVDRLGAWVK-- 292 Query: 283 RLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLY 342 + E + + L + L L ++ + R+ +LD + Sbjct: 293 --RNKEYNKKSDAGRYLLTDFVFSILKTLQKILN--ENLFQAKYRRAEILDELSGILHRF 348 Query: 343 RTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMA--QKPGSWIFTSATLS 400 + Y+ W F + + + F++++ + IF S TL+ Sbjct: 349 LQK---------EKYTSWISLEDNEF--HVIENNYKEVFRQMLDYIKNSNKIIFMSGTLT 397 Query: 401 VNDDLHHFTSRLGIE--QAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRP 458 VN D + ++ I+ +A + +L SPFDY QAL+ + + L N+ +R Sbjct: 398 VNKDFSYIKNQWNIKSGEAVTKVLNSPFDYKNQALIYIPKKLGNPNKDEFIENALKEIRK 457 Query: 459 IIEANNGRCFMLCTSHAMMRDLAEQFRATM---TLPVLLQGETSKGQLLQQFVSAGNALL 515 ++ GR +L TS M + + + +P+ QGE+ L ++F ++L Sbjct: 458 LLRLTGGRTLLLNTSKDHMDEFYNGIKVELATSNVPLYKQGESGVENLTKRFKELEESVL 517 Query: 516 VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVI 575 V + SF+ G + G +L+ VII+KLPF + +DP+++ + D F +V P + Sbjct: 518 VGSGSFFSGFSIAGTSLTSVIINKLPFPAFNDPIIELMSMGIKKE--DRFKKVSYPMMIN 575 Query: 576 TLKQGVGRLIRDADDRGVLVICDNR-LVMRPYGATFLASLPP--APRTRDIARAVRFLAI 632 L Q VGRLIR +D G++ I D R + YG L TR F Sbjct: 576 KLDQAVGRLIRSIEDYGIVTILDERIYTSQGYGKDVRELLKEQGYVLTRSWEEVESFYIK 635 Query: 633 PSSR 636 + Sbjct: 636 KLEK 639 >UniRef50_C6D1G2 DEAD_2 domain protein n=5 Tax=Bacillales RepID=C6D1G2_PAESJ Length = 773 Score = 347 bits (889), Expect = 1e-93, Method: Composition-based stats. Identities = 125/627 (19%), Positives = 224/627 (35%), Gaps = 68/627 (10%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 A P R QR++A + Q I G+ L +A TG GKT + L PA+ K Sbjct: 185 AFPFSSYRAGQRKLAASAYQTIADGRKLFAKAPTGIGKTMSTLFPAV------------K 232 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 A+ ++ R ++ T LK L L + + V L Sbjct: 233 AIGEERLERLFYLTARTTTRTAAEEALKM---------LGDGGLHLHAVTLTAKEKVCLK 283 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLV---TSTNDNCLGSDCPMYKDCFVVKARKKAMD 190 + + + ++ S + + C + A Sbjct: 284 DEVRCSPEYCEFAKGYYDRINGAILDMLGNEASMTREVIERYAYKHHVCPFEFSLDAAYA 343 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 AD V+ +++ D V E ++ DEAH L D A + + L L+L Sbjct: 344 ADAVICDYNYIF-DPRVNLKRLFEEQKRKTALLVDEAHNLVDRAREMYSAELRKADFLEL 402 Query: 251 AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLL 310 + A +T Q K ++ + + + G+ N+ L ++ Sbjct: 403 QR----ASKTIRPLVYQSAKAVNQYFIALRKSIEESGKEATGTNMERYLP----EQLIEQ 454 Query: 311 LDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTL 370 L+ ++ + LLD F R+ ++ Y + E + Sbjct: 455 LETLVQAAEEQLAQGDQDPLLLDVYFG-----CQHFLRIAKLYDERYVTYAEKERNDVRM 509 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPSPFDY 428 L L + ++ A+ + I SATLS +F LG + ++ +PSPF Sbjct: 510 KLFCLDPSYLLRQ-YAKGYKAQILFSATLSPLH---YFMDMLGGDAETDYAVAIPSPFSS 565 Query: 429 SRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF---- 484 + + + ++ + ++A +LR +E + G + S+A + + E+F Sbjct: 566 EQLDVRIEKLSTRYQDRERTMDRVAGLLRSTVERHQGNILVFFPSYAYLNGVYERFMELP 625 Query: 485 ---RATMTLPVLLQ----GETSKGQLLQQFVSAGNALLVA----TSSFWEGVDVRGDTLS 533 + T ++Q E + L F N LV F EG+D+ GD L+ Sbjct: 626 LSEEESATFTAMVQRPNMPEEERDAFLAAFAPDNNNTLVGFAVMGGIFSEGIDLVGDRLT 685 Query: 534 LVIIDK--LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR 591 V + LP + ++K + +G + F+ + + + Q GRLIR DR Sbjct: 686 GVAVVGVGLPQVGLERNIIK---DYFDRQGKNGFEYAYVFPGMNKVLQAGGRLIRSESDR 742 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAP 618 G+L++ D+R Y LPP Sbjct: 743 GMLLLIDDRYAHPQYARL----LPPEW 765 >UniRef50_C0ESD4 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ESD4_9FIRM Length = 816 Score = 344 bits (883), Expect = 6e-93, Method: Composition-based stats. Identities = 126/630 (20%), Positives = 227/630 (36%), Gaps = 65/630 (10%) Query: 12 AKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTG 71 A P F R Q++M QA+E + + ++A TG GKT + L PAL Sbjct: 209 ALQFP-FSFRPGQKKMTAIAYQAMENKKHIFLQAPTGVGKTISTLYPAL----------- 256 Query: 72 SKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVI 131 K L + +K + T +K L++Q L + + + Sbjct: 257 -KELGAEKAENIFYLTAKTITRTVAEDTIK---------LLKKQGLFLSAVTITAKEKIC 306 Query: 132 LLRSWSNQTVDGDISTCVSVAEDSQAWPLVTST---NDNCLGSDCPMYKDCFVVKARKKA 188 + + + + + L+T+ + + YK C + + A Sbjct: 307 IQEEMQCNPESCERAKGHFDRINEALYALLTAECEISRENILLFAEKYKVCPYELSFEAA 366 Query: 189 MDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL 248 + AD ++ +++ D V E ++ + DEAH L D A + + ++ Sbjct: 367 VWADCIICDYNYVF-DPHVNRKSLIEGSLRQNIYLIDEAHNLLDRAREMYSADIAKSDFK 425 Query: 249 DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF 308 K R K +L + AQ G R L E + F Sbjct: 426 VPKKYFKDRNRFLFKKLGNCVMALRKLEKQAQ--------DGTRFRLHE-NVDAMYFPIF 476 Query: 309 LLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF 368 L+ E D S R +++ F+ T + + GY + E R F Sbjct: 477 HLIGPLEEYLADHDNFS-EREEIVEFYFK-----LTHFYMMLDSMDSGYEIYSEKRGRDF 530 Query: 369 TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDY 428 L L ++ +DK +E + S IF SATL ++ LG + E+ + SPF Sbjct: 531 LLRLFCVNPSDKLEEYIENS-RSSIFFSATLLPV---QYYRQLLGGNRFEAYQIASPFAK 586 Query: 429 SRQALLCVLRNLPQTNQPGSARQLAAMLRPI---IEANNGRCFMLCTSHAMMRDLA---E 482 + LL + ++ + M+R + +E G + S+ M+ + E Sbjct: 587 ENR-LLAITEDVTSRYTRRGEWEYGKMIRYLELCLEKKAGNYMIFFPSYEMLTSVYGMAE 645 Query: 483 QFRATMTLPVLLQG----ETSKGQLLQQFVSAGN----ALLVATSSFWEGVDVRGDTLSL 534 Q + +++Q E S+ L++F V S F EG+D+ G++L Sbjct: 646 QSNLALVSEIIVQEPSMEERSREAFLEKFREQSGKPLIGFCVLGSIFSEGIDLTGNSLIG 705 Query: 535 VIIDK--LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRG 592 V+I LP + +++A + +D + + Q GR+IR A+D G Sbjct: 706 VLIVGTGLPQICNEREVIRA---YFDRQQKKGYDYAYRYPGMNKVLQAAGRVIRTAEDVG 762 Query: 593 VLVICDNRLVMRPYGATFLASLPPAPRTRD 622 +++ D R + R + Sbjct: 763 TILLMDERFLERDNQSLLPEEWESYYAVNR 792 >UniRef50_C5RBP3 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBP3_WEIPA Length = 970 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 148/692 (21%), Positives = 263/692 (38%), Gaps = 86/692 (12%) Query: 20 PREPQRQMAVAVTQAIEK-------GQPLVV-EAGTGTGKTYAYLAPALR----AKKKVI 67 RE Q ++ A+ G+ + EA TG GKT +L P +KKVI Sbjct: 283 YREQQAKLMNAINNHYSGSSLSEKPGESAFIAEAPTGMGKTLGFLLPYAYLTNQNQKKVI 342 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 ++ + LQ Q+ + L + LKGR YL L+ ++ +L + + Sbjct: 343 VTEPTITLQTQVTETVNTVLHDILPFEVRAVSLKGRHQYLNLQSFKR-SLQIDEGTTSLQ 401 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 + W +T+ GD + + ++ +N GS P Y F + Sbjct: 402 FIKAQILVWLTETMRGDFDELHLMNAQQKFIAKLSQNANNPAGS--PFYGYEFFERQYVL 459 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 A +A ++VNH E G E P ++ DEA LPD L + Sbjct: 460 AQNAQFLIVNHSYLAE--YANELGTSENKP---YLVIDEAQNLPDAVLNQSRHQLPIQTW 514 Query: 248 LD--------LAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE----------- 288 L + +D A L++ + ++L ++ + +++ + Sbjct: 515 LARVQTAINLILQDAKPAVGDILRNIFGGNQLKNKLLRALEMLSVEIPQLQVSLYRRFLL 574 Query: 289 ----PGYRGNLRELLANPQIQRAF-------LLLDDTLELCYDVAKLSLGRSALLDAAF- 336 P +G LAN + + + D + L + + AF Sbjct: 575 NQKAPATQGTYEIALANNDFAQFWIDQSNHVQSIHTGASDLEDALQELLTQFSDTKGAFS 634 Query: 337 ----ERATLYRTRLKRLKEINQ-------------PGYSYWY----ECTSRHFTLALTPL 375 ++ +R L + + + +W S + L+ L Sbjct: 635 LGERQQLADFRRLLDNISQYEKQLTTFQQDLVDFPEASIFWLTETQSHDSSNLQLSGGLL 694 Query: 376 SVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPSPFDYSRQAL 433 + FKE + + ATL + + RL +++ A P FD+ QA Sbjct: 695 HTLNYFKEKVYPHFMAPTVIGATLFTSTKSGYLYDRLNLDKETATVRHYPDIFDFKNQAD 754 Query: 434 LCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTL--- 490 L +++N P + + LA L + + N +L S ++ + ++ Sbjct: 755 LIMVKNAPLPTEKDFSNYLAKQLVDVTTSVNQNTLVLFNSLDTIQQVYNHIQSNKKFQQS 814 Query: 491 --PVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 +L QG ++G++ ++ S +++ +SFWEG+D+ GD L L+II +LPF P+ Sbjct: 815 SLTLLAQGVTGTRGKIKKRMQSEDGLVVLGAASFWEGIDLPGDQLRLLIIARLPFDRPNT 874 Query: 548 PLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 L KA G PF + LP AV+ L+QG+GRLIR D G ++I D R++ + YG Sbjct: 875 VLQKAEEAVINSEGKQPFYQSTLPKAVLRLRQGIGRLIRTPTDYGAVIIYDARILTKSYG 934 Query: 608 ATFLASLPPAPRTRDIA------RAVRFLAIP 633 T +P +++ F Sbjct: 935 KTLRKMMPSNLPQKELNDYEVSLELKNFFDEH 966 >UniRef50_B0S2X2 ATP dependent helicase n=2 Tax=Finegoldia magna RepID=B0S2X2_FINM2 Length = 748 Score = 343 bits (880), Expect = 1e-92, Method: Composition-based stats. Identities = 134/612 (21%), Positives = 240/612 (39%), Gaps = 61/612 (9%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 + P R Q+ ++ V A ++G L+VEA TG GKT + L P++ K Sbjct: 186 SFPYPAFRAGQKYLSQNVYSATKQGVDLMVEAATGIGKTISTLFPSI------------K 233 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 A+ + L + +K + LK ++ L ++Q+ L + + + V + Sbjct: 234 AMGEDLTDKIFYLTAK--------STLK-KACNDQLYLMKQKGLIIKSVEIIAKNKVCIN 284 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTN---DNCLGSDCPMYKDCFVVKARKKAMD 190 D + + + ++ + + + + Y+ C + + Sbjct: 285 NEVKCNPNDCEFAKGHYDRVNKCILDMLENGDIIVEEIIKKYAFKYRVCPLELELDLSNF 344 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 D+V+ +++ D VV F E+ ++ DEAH L + SLS QL+D Sbjct: 345 CDIVICDYNYVF-DPVVYLKRFFEVPYLRMSLLVDEAHNLVSRGRDMYSYSLSFNQLMDC 403 Query: 251 AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLL 310 D + + ELK + L+K A ++ A G N E L+ I Sbjct: 404 C-DELVDEKKELKIKRNLKKIAQQIKDEAL---------GKPVNTYEDLSVDLIDYCVRC 453 Query: 311 LDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTL 370 + + + K +LD FE + + + + + + Sbjct: 454 KESMTKFLVEE-KDKPYYDKVLDVYFEINKFLK-----ISDFYDDSFVTLIKSENDDVIY 507 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSR 430 + L+ + FK L+ +K S +F SATLS + +F LG+E+ ++ L SPF Sbjct: 508 NIMCLNTHNIFKNLL-KKCKSNVFFSATLSP---MTYFADVLGLEKFYNIRLESPFPKEN 563 Query: 431 QALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTL 490 + + + ++ + ++A +LR I G + S++ + + E Sbjct: 564 LKVNHINISTRFKDREDTKYKIAEILRKI-NEKPGNKLIFFPSYSYLESVYEI----CDF 618 Query: 491 PVLLQGET----SKGQLLQQFVSAGN--ALLVATSSFWEGVDVRGDTLSLVII--DKLPF 542 +L Q T + + L QF ++ N A V F EGVD+ GD L+ V I LP Sbjct: 619 DILTQERTLTDMERLEFLSQFTTSSNIMAFCVLGGVFSEGVDLSGDRLNTVGIISVGLPG 678 Query: 543 TSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 S ++ L+K G + FD + + + Q GRLIR D G L + D+R Sbjct: 679 ISVENDLIKK---YFDENGKNGFDYAYVYPGMNKVHQAGGRLIRTDTDTGELFLIDDRFD 735 Query: 603 MRPYGATFLASL 614 PY + S Sbjct: 736 SYPYKSLLPNSW 747 >UniRef50_C7MLW6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLW6_CRYCD Length = 1043 Score = 343 bits (879), Expect = 1e-92, Method: Composition-based stats. Identities = 185/735 (25%), Positives = 290/735 (39%), Gaps = 124/735 (16%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 + + F+ G + K P F+ R+ Q MA AV A G+ L VEAGTG GK+ AYL PA+ Sbjct: 303 IREAFSSAGPVGKIYPEFEARDEQVTMAEAVNDAFSTGKNLAVEAGTGVGKSMAYLVPAV 362 Query: 61 ----RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQA 116 + V ++T + AL DQL +LP +S A+ + LKG S+YLCL ++E+ Sbjct: 363 FTAQKNGITVGVATKTNALLDQLMHHELPRLSSAVG-GISYCSLKGFSHYLCLRKVERLM 421 Query: 117 LAG------GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPL--VTSTNDNC 168 G D + + + S+ Q+ DI + D + P +T+T+ +C Sbjct: 422 QTGPHMKTVQDRELSQAPALAGVLSFIEQSEYEDID---GMRVDYRLMPRYEITTTSHDC 478 Query: 169 LGSDCPMY-KDCFVVKARKKAMDADVVVVNHH------------------LFLADMVVKE 209 L CP Y + C+V +R KA AD +VV + ++ D Sbjct: 479 LRKKCPFYGQRCYVHGSRFKAEAAD-IVVTNQTLLFCDVAADGGLLPSIRYWVIDEAHNA 537 Query: 210 SGFGELIPEADV--------------------MIFDEA-HQLP---DIASQYFGQSLS-- 243 G + + IFD+A +L D F +++ Sbjct: 538 EGEARRALGSSIELDELARRAQRVSPSSAMGQTIFDQAERKLVGKIDANEDAFASTVTAD 597 Query: 244 SRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRG---------- 293 + L D+T+ + + Q D L + + G+ Sbjct: 598 LDETALLRDDLTLKSQNDPISGQTGLSGGDTLLFALSGKAKRAGDAFACAVDEFTQAAES 657 Query: 294 -------------NLRELLANPQIQR---------AFLLLDDTLELCYDVAKLSLGRSAL 331 +L ++ N Q++ A L D E + +G Sbjct: 658 LLYFDTSSRSKSYDLVDIWINDQVRSSEVFQSLSTAGHALVDASEKLIKACQEMVGLMED 717 Query: 332 LDAAFERATLYRTRLKRLKEINQPGYSYWYE-----------------CTSRHFTLALTP 374 + A + LK++ +E + R L Sbjct: 718 VKGAAAIQRDIASMALYLKDVINSIELIVFEGSDTFAYSVQLARKKNTYSRRSEKLDALM 777 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQA-----ESLLLPSPFDYS 429 L+V ++ E + + S +FTSAT+++ + F + LG+ + L L S +D+ Sbjct: 778 LNVGNELAERLYARTHSIVFTSATMTIANAFDSFFTALGLSEEGERATVHLQLGSSYDFD 837 Query: 430 RQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM- 488 + V+ ++P+ N L +L I A+ G L T+ M +A + Sbjct: 838 ENMKIYVVEDMPEPNDARYLAALEQLLIDIHRASAGSTLSLFTNRREMERAHSTVQAALK 897 Query: 489 --TLPVLLQ-GETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSP 545 L V+ Q S L +F++ + L A SFWEG D G TL V+I KLPF+ P Sbjct: 898 GDGLRVVCQKWGVSVKGLRDEFIADEHLSLFALKSFWEGFDAPGATLKTVVIPKLPFSKP 957 Query: 546 DDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRP 605 DPL AR + + LP AVI KQ GRLIR A D G L++ D RLV + Sbjct: 958 TDPLSCARAQMDAQ----AWSHYVLPQAVIETKQAAGRLIRSAHDTGSLILADRRLVTKG 1013 Query: 606 YGATFLASLPPAPRT 620 YG FL S+P T Sbjct: 1014 YGKVFLKSMPSRNIT 1028 >UniRef50_C4HUU2 DinG family ATP-dependent helicase YoaA n=2 Tax=Yersinia pestis RepID=C4HUU2_YERPE Length = 464 Score = 341 bits (874), Expect = 5e-92, Method: Composition-based stats. Identities = 277/376 (73%), Positives = 309/376 (82%), Gaps = 8/376 (2%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 M DDFA DG LA+AI GF PRE QRQMA A+++AI+ Q LVVEAGTGTGKT+AYLAPAL Sbjct: 1 MIDDFATDGALAQAIKGFNPRESQRQMAAAISEAIDAKQQLVVEAGTGTGKTFAYLAPAL 60 Query: 61 RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGG 120 RA KVIISTGSKALQDQLYSRDLP + ALKY G +ALLKGRSNYLCLERLEQQ+LAGG Sbjct: 61 RADCKVIISTGSKALQDQLYSRDLPMMVTALKYKGKLALLKGRSNYLCLERLEQQSLAGG 120 Query: 121 DLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCF 180 DL + L D++ LR WS +TVDGDISTC VAEDS WPLVTSTNDNCLGSDCP+YKDCF Sbjct: 121 DLASETLVDLVRLRGWSAETVDGDISTCGQVAEDSFVWPLVTSTNDNCLGSDCPLYKDCF 180 Query: 181 VVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 VVKAR++AMDADVVVVNHHLFLADMVVKESGF ELIP ADVMIFDEAHQ+PDIASQYFGQ Sbjct: 181 VVKARRRAMDADVVVVNHHLFLADMVVKESGFAELIPTADVMIFDEAHQIPDIASQYFGQ 240 Query: 241 SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLA 300 L+SRQL+DLAKDI IAYRTE++D+ QLQK ADRL QS QDFRL LG+PGYRGNLR+++ Sbjct: 241 QLTSRQLMDLAKDIIIAYRTEVRDSAQLQKSADRLTQSTQDFRLVLGDPGYRGNLRDVME 300 Query: 301 NPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYW 360 P +QRA LLLDD LELCYDV KLSLGRSA+LDAA ERAT+YR RLK S+W Sbjct: 301 QPTVQRALLLLDDALELCYDVMKLSLGRSAMLDAALERATVYRNRLK--------PSSFW 352 Query: 361 YECTSRHFTLALTPLS 376 R L+ + Sbjct: 353 EGVDVRGDALSCVIID 368 Score = 164 bits (415), Expect = 9e-39, Method: Composition-based stats. Identities = 99/111 (89%), Positives = 105/111 (94%) Query: 520 SFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQ 579 SFWEGVDVRGD LS VIIDKLPFTSPDDPLLKAR+EDCRLRGGDPF++VQLPDAVITLKQ Sbjct: 350 SFWEGVDVRGDALSCVIIDKLPFTSPDDPLLKARIEDCRLRGGDPFNDVQLPDAVITLKQ 409 Query: 580 GVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFL 630 GVGRLIRD DDRGVLVICDNRLVMRPYGA FL SLPPAPRTRD+A+A+ FL Sbjct: 410 GVGRLIRDIDDRGVLVICDNRLVMRPYGAMFLNSLPPAPRTRDLAKAIAFL 460 >UniRef50_A6M309 DEAD_2 domain protein n=4 Tax=Clostridium RepID=A6M309_CLOB8 Length = 761 Score = 340 bits (872), Expect = 9e-92, Method: Composition-based stats. Identities = 112/617 (18%), Positives = 220/617 (35%), Gaps = 61/617 (9%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSK 73 P K RE QR++ Q I++ + L V+A TG GKT + + PA+ K Sbjct: 188 NFPFEKYREGQRKLINVSYQTIKEEEILFVQAPTGIGKTISTIFPAV------------K 235 Query: 74 ALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILL 133 A+ + + + + +K + ERL Q+ L + + + Sbjct: 236 AISEGIGEKIIYLTAKTINREVAEETF---------ERLRQEGLKFRTITITAKEKTCIN 286 Query: 134 RSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND---NCLGSDCPMYKDCFVVKARKKAMD 190 + + ++ L Y+ C + + Sbjct: 287 DDFDCNPEKCIYAKDYYGKVKKVITNVIEREERISTEILKEYAEKYQVCPFELSLDISTY 346 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 D ++ +++ V + ++++ DEAH L D + + SL Q+L+ Sbjct: 347 CDGIIGDYNYIFDPRVSLSRVLES---KGNIVLVDEAHNLIDRSRNMYSASLYKSQILNC 403 Query: 251 AKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLL 310 K +L ++ + R + + E + L Sbjct: 404 KK-------ITKGKLNKLHSLLGKINDYFINLRNECDHREVKSFYEEEHPKELSKYLQLY 456 Query: 311 LDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTL 370 L ++ E+ G +L F+ ++ Y E S+ L Sbjct: 457 LKESEEVLV-RGNRFDGYEDILKLYFD-----MNAFTSTTQLYDENYRTCIEKDSQEIKL 510 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES-LLLPSPFDYS 429 L ++ A +E + K S IF SAT+S + ++ + LG + L LPSPF+ Sbjct: 511 TLYCVNPAKNLREYL-GKCYSVIFFSATISP---IKYYVNMLGGDDNTYRLKLPSPFNKE 566 Query: 430 RQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM- 488 + N+ + + + + + I+ G + S+A M +L + Sbjct: 567 NLKVHISPINIRYSYRKRTLSSVKDKICGFIKQQIGNYMIFSPSYAYMEELYSHMEESKL 626 Query: 489 -TLPVLLQG----ETSKGQLLQQFVSAGNALLVA--TSSFWEGVDVRGDTLSLVIIDKLP 541 ++ Q E K + L++F ++ N L+ F EG+D+ GD L II + Sbjct: 627 EEFNLMKQKPNMTEEEKSEFLRRFKNSNNLLMFCVLGGMFSEGIDLPGDQLIGSIIIGVG 686 Query: 542 FT--SPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 + + ++K ++ D +D + + ++Q VGR+IR D+G +++ D+ Sbjct: 687 YPMVDMTNEVIKDFYKE------DGYDYAYVFPGINKIQQAVGRVIRTETDKGRVLLIDD 740 Query: 600 RLVMRPYGATFLASLPP 616 R + Y P Sbjct: 741 RYINNKYSVLLPNEWYP 757 >UniRef50_D0N844 Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0N844_PHYIN Length = 1058 Score = 340 bits (872), Expect = 1e-91, Method: Composition-based stats. Identities = 118/732 (16%), Positives = 226/732 (30%), Gaps = 128/732 (17%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK------- 63 + P P + Q V A+ Q ++E+ TGTGKT L L + Sbjct: 9 IPVEFPFP-PYDSQLIYMEKVLLALTSKQNAILESPTGTGKTLCLLCATLAWRRELQKKL 67 Query: 64 -------------------------------KKVIISTGSKALQDQLYSRDLPTVSKALK 92 ++I S+ + + Q+ K Sbjct: 68 GTNTLAPAKRPGPSLAYEGYGSDGESDAPQLPRIIYSSRTHSQLKQVVQEL-----KNTS 122 Query: 93 YTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVA 152 Y NVA+L R + E++ + +L + S Sbjct: 123 YRPNVAVLGSREHLCVNEKVSKLRGTRQNLACRSTCKDRRCMHKLGFDSYAKRSK-KQAQ 181 Query: 153 EDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGF 212 LVT+ + + C R +A++V V ++ + M + G Sbjct: 182 PIMDIEELVTTMKEKII---------CPFFLTRNMLPEAEIVFVPYNYLIDPMARRSIG- 231 Query: 213 GELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCA 272 + E ++IFDEAH + IAS+ +LSS + ++ R ++ QL + Sbjct: 232 --ISIENSILIFDEAHNVESIASEAASYALSSNDISGCISEVDTFIRGLSTNSIQLNAGS 289 Query: 273 D-RLAQSAQDFRLQL-------GEPGYRGNLRELLANPQIQRAFLLLDDTLELCY---DV 321 + L SA L++ G+ + + + ++++ +E+ + D Sbjct: 290 NLTLEDSAVSRCLRMEVLPRYPGQYIFEFFEQFNVNFETCPLVLSMIEEIIEVAHGGDDS 349 Query: 322 AKLSLGRSALL----------DAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFT-- 369 + + +L + + A YR ++ ++E + T Sbjct: 350 QRAASKLDTMLSFLGTIFRSKEQHLQAAKNYRVHIQEIRERPSNSGRLFNSGRKNKTTTT 409 Query: 370 --LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFD 427 F+E+ + I TS TLS L LGI+ L D Sbjct: 410 RVFNYWCFHPGVAFREICTNNVHNVILTSGTLSP---LDTTVKELGIDFPVRLENNHVVD 466 Query: 428 YSRQALLC---------VLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 + + + + + +L + + S++++ Sbjct: 467 ADQVWVGVVGTGVTGKKLNSSYNFRSTETYLLELGNTIVNFTRLVPHGLLVFFPSYSILE 526 Query: 479 DLAEQFR----------------ATMTLPVLLQGETSKGQLLQQF-----VSAGNAL--L 515 + ++++ V +G ++ ++ + A+ Sbjct: 527 ESIDKWQRPATGQSALSIWDRIVQQKQTFVEPRGRADFKAVVDEYHQAIADNPKGAVFFA 586 Query: 516 VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPF------DEVQ 569 V EG+D D VII LPF DP + + P + Sbjct: 587 VCRGKVSEGIDFSNDKGRAVIITGLPFPPTKDPKIMLKKSILDEAVVSPGELKLTGNAWY 646 Query: 570 LPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT-RDIARA-- 626 + A + Q +GR+IR D G +++ D R ++ L P T R A Sbjct: 647 IQQASRAVNQAIGRVIRHRHDYGAIILLDERFALKQQQECLSKWLQPYCHTCRGYGEAHI 706 Query: 627 --VRFLAIPSSR 636 RF +R Sbjct: 707 GLTRFFKTNKTR 718 >UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38X67_LACSS Length = 944 Score = 340 bits (871), Expect = 1e-91, Method: Composition-based stats. Identities = 145/696 (20%), Positives = 263/696 (37%), Gaps = 83/696 (11%) Query: 16 PGFKPREPQRQMAVAVTQAIEKG--QPLVVEAGTGTGKTYAYLAP---ALRAKKKVIIST 70 P K R+ Q M + E +PL++EA TG GKT YL P + K++++T Sbjct: 256 PHLKWRKAQATMMDLIHDNFESETPEPLLIEAATGLGKTIGYLLPYSYRMSRDHKLVVAT 315 Query: 71 GSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 + LQ+Q+ ++ P + + + N A++K S+Y+ L R E +L I Sbjct: 316 STTLLQEQILTQAKPLLERLVGRQINAAVVKSASHYIDLHRFE-LSLRLPHKNRMIRLLQ 374 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMD 190 + + W QT GD+ + + + + L P Y + F+ + + Sbjct: 375 MKILVWLTQTTTGDLDELNLTSYKTPFFVSIQHRGLASLNPQAPFYHEDFLRRLTHRQQQ 434 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 A+++V NH + ++ + ++ DEA + ++ S Sbjct: 435 AELLVTNHAYLASHADEQQIWGPK-----PYLVLDEAQNMVFNVQTISQETWSLSSWQFW 489 Query: 251 AK---------------DITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGE------- 288 A+ + A + + + L K +L ++ L E Sbjct: 490 AQKGLQYTTGAQTNNLVRLFPAETPQNRSLKLLHKTLGKLTRTLAHLETYLTEQFEPDEP 549 Query: 289 -PGYRGNLRELLANP-------------QIQRAFLLLDDTLELCYDVAKLSLGR-----S 329 G + R L + Q+ R L + D + L R Sbjct: 550 TDGQTFSERYLNPDEVIQFVNASQREFGQLNRELLTIQDHFLALRYALEDQLARYTESDL 609 Query: 330 ALLDAAFERATLYRTRLK--------RLKEINQPGYSYWYECTSRH-------FTLALTP 374 A+ + L + + Q ++ + T F L Sbjct: 610 AIWQSFENELNLLLADVDHYQRFEQLFIATKPQERHALAIQITRPSQPSQLPQFKLHWQL 669 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLL---LPSPFDYSRQ 431 LS + ++++ T ATL+VN + G + ++L L SPF + +Q Sbjct: 670 LSAGPQMQQVL-SHFEPVTLTGATLAVNGHFDYLKREFGFTEEQALQTKKLRSPFRFKQQ 728 Query: 432 ALLCVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA-- 486 A + + P + +Q+AA + +I N + +L ++ + + Sbjct: 729 ARFYIAEDGPVQKELTPSDYHQQVAAQVMTLIANNPHQTLILFNANQTLEQVYYALGRAG 788 Query: 487 -TMTLPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTS 544 ++ VL QG S ++ ++F+ +++L+ATSSF GVD L +VI+ +LPF + Sbjct: 789 LSLDREVLAQGITGSAEKITKRFMLGHDSVLLATSSFVSGVDFPEAALEMVILVQLPFDA 848 Query: 545 PDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMR 604 P+ + R +G +PF LP A I L+Q GRLIR +D G+ + D RL+ Sbjct: 849 PNALQTRVRYAQLAAQGINPFKAEALPKATIRLRQSFGRLIRTPNDHGLFICLDPRLLTT 908 Query: 605 PYGATFLASLP-----PAPRTRDIARAVRFLAIPSS 635 YG +LP A + I + S Sbjct: 909 QYGQQMRRALPASLPQKAAPVQTIRELSDLFWLNSD 944 >UniRef50_B6FUD5 Putative uncharacterized protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FUD5_9CLOT Length = 678 Score = 340 bits (871), Expect = 1e-91, Method: Composition-based stats. Identities = 143/651 (21%), Positives = 257/651 (39%), Gaps = 57/651 (8%) Query: 15 IP--GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR----------- 61 P G RE Q ++ + + Q + +AG G GKTYAYL + Sbjct: 44 FPEQGLAVREEQIRLCHEMLDTLLGEQIALCDAGVGIGKTYAYLVACVLLRKYSMLTGRG 103 Query: 62 ---AKKKVIISTGSKALQDQLYSRDLPTVSKAL------KYTGNVALLKGRSNYLCLERL 112 ++ V++ST S ALQ + + +P +S+ L + + KG+ +++C RL Sbjct: 104 NPLEQRPVVVSTSSIALQKAILTEYIPFLSRVLLEQGIIQSPLRAVVRKGKEHFVCDNRL 163 Query: 113 EQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSD 172 EQ+ A + LL + D+ + +++ + C Sbjct: 164 EQRIEAIRHKQKNAVQKAALLSLRKHY----DMDSVKNLSGFD---RRLVCVPKFCPRE- 215 Query: 173 CPMYKDCFVVKARKKAMDADVVV--VNHHLFLADMVVKESGFGELIPEADVMIFDEAHQL 230 CP + C + +++ DV + NH+ LAD + G+ L+ + +I DEAH+L Sbjct: 216 CPGRQMCRYQRYLEESRKQDVFIQICNHNYLLADAYHRAEGYKPLLSDYRTLIVDEAHKL 275 Query: 231 PDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPG 290 P+ A Q FG++L + ++A + ++ E + D L ++G+ Sbjct: 276 PEAARQMFGKNLCMDDIREIAYYLEREHQKEEAKILRTV-MHDALH--VVGAEHRIGKGI 332 Query: 291 YRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLK 350 + + +L+ LE ++ + R + L+ Sbjct: 333 RETFRNTTNSVVSLWEGVEMLEFLLEKL---------ERSVPKWIWNRLEEAKDVLECFC 383 Query: 351 EINQPGYSYWYECTSRHF-TLALTPLSVADKFKELMAQ--KPGSWIFTSATLSVNDDLHH 407 + Y + + L + ++++ + S I TS TL Sbjct: 384 S-SDEKYVRYLHLDTEQLPVLCAASREIPGLLRKMLWNWEEGMSAILTSGTLKAGTGFLR 442 Query: 408 FTSRLGIE---QAESLLLPSPFDYSRQALLCVLRNLP--QTNQPGSARQLAAMLRPIIEA 462 G+E + + SPF Y + LL + + L + A +A + +I + Sbjct: 443 TRQITGLEGRAGVQEYVAESPFSYEKNCLLYLPKTLDHCRRGSREEAVMVANHIHSLICS 502 Query: 463 NNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFW 522 G +L TS+ +M + + R ++ P++ S+ ++L +F + N +L A S W Sbjct: 503 TYGHTLVLFTSYTLMGSVYQILRDSLPFPMVEVWRHSQEEIL-RFKTMENGVLFAAGSCW 561 Query: 523 EGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVG 582 EGVD GD +S +II KLPF P DP+ +A E + +PD L+Q G Sbjct: 562 EGVDFPGDMVSSLIIVKLPFAVP-DPISEAEKETYDSL-ETYIQSIIVPDMQKKLRQEFG 619 Query: 583 RLIRDADDRGVLVICDNRLVM-RPYGATFLASLPPAPRTRDIARAVRFLAI 632 R IR D V+ I D R V Y + +LP ++ F+ Sbjct: 620 RAIRTETDTCVVSILDIRAVKGGKYHEDAMCALPSCRIAEELKEVQDFIRS 670 >UniRef50_B9GEL6 Predicted protein (Fragment) n=2 Tax=rosids RepID=B9GEL6_POPTR Length = 749 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 108/741 (14%), Positives = 212/741 (28%), Gaps = 139/741 (18%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK------- 63 + P F+ + Q V Q+++ ++E+ TGTGKT L L + Sbjct: 10 IDVDFP-FEAYDCQLVYMEKVIQSLQNKCNALLESPTGTGKTLCLLCATLAWRKSLGGFS 68 Query: 64 ----------------------------KKVIISTGSKALQDQLYSRDLPTVSKALKYTG 95 ++ ++ + + Q+ K Y Sbjct: 69 TGKIERNGRIAGGKLDIVPSSQSEDRNLPTIVYASRTHSQLRQVIQEL-----KRSSYRP 123 Query: 96 NVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVD---GDISTCVSVA 152 + +L R LC+ E+ +L G + + R T D C Sbjct: 124 KMVILGSREQ-LCIH--EEVSLLRGKVQNNACHLICKTRGKRQCTHYSRVADYVKCNPHL 180 Query: 153 EDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGF 212 D + L + + C +R+ D++ ++ + Sbjct: 181 GDEPV-------DIEDLVNIGRTFGPCPYYISRELHKVVDILFAPYNYLID---RGNRKS 230 Query: 213 GELIPEADVMIFDEAHQLPDIASQYFGQSL-------------SSRQLLDLAKDITIAYR 259 + + ++IFDEAH L + + L S L ++ + Sbjct: 231 LAIDWDNSILIFDEAHNLESLCADAASFDLPSWLLTACISEAKSCIDLSVTRREESNDKS 290 Query: 260 TELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN---LRELLANPQI-QRAFLLLDDTL 315 + L+ +L + + ++ E G+ + ELLA+ + + D + Sbjct: 291 WNPDNFAILRALLLKLEKRIAEVPIESKELGFTKPGPYIYELLADLNVTHDTATKIIDII 350 Query: 316 ELCYDVAKLSLGRSALLDAAFERATLYRTRLKRL-KEINQPGYSYWYE---------CTS 365 + + + + R L+ + +E N +++ E Sbjct: 351 KDAAVLLEEDKQDKSKGTGC--RLESISDFLQIIFREKNNSHANFYREGEANAADVLKGK 408 Query: 366 RHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSP 425 TL+ + +E S I TS TLS D L ++ L P Sbjct: 409 PSRTLSWWCFNPGIAMQEFSRMGVRSIILTSGTLSPLDSF---AQELKLDFPIRLENPHV 465 Query: 426 FDYSRQALLCVL---------RNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAM 476 ++ V + + ++L + + S+ + Sbjct: 466 ISSNQIWAGVVPAGPSGRSLNSSYRTRDSLEYKQELGNAIVNFARIVPDGLLVFFPSYYL 525 Query: 477 MRDLAEQFRA--------------TMTLPVLLQGETSK-----GQLLQQFVSAGNA---- 513 + ++ PV+ ++S L + + Sbjct: 526 LDQCISCWKNMSQANSTTIWERICKHKKPVVEPRQSSLFPLAIEDYLAKLKDTSTSGAVF 585 Query: 514 LLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGD---------- 563 V EG+D V+I +PF DP ++ + E + Sbjct: 586 FAVCRGKVSEGLDFADHAGRAVVITGMPFAMRTDPKVRLKREYLDGQTHSQRDGCKMLKL 645 Query: 564 ---PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 +E A + Q VGR+IR D G ++ CD R R + P + Sbjct: 646 QVLSGEEWYGQQASRAVNQAVGRVIRHRYDYGAIIFCDERFEHRNRQTQISLWIQPHIKC 705 Query: 621 RD-----IARAVRFLAIPSSR 636 + RF SR Sbjct: 706 HSKFGDVVFTLSRFFRDGGSR 726 >UniRef50_A7VIR7 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=A7VIR7_9CLOT Length = 856 Score = 339 bits (870), Expect = 2e-91, Method: Composition-based stats. Identities = 132/650 (20%), Positives = 241/650 (37%), Gaps = 72/650 (11%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P ++ R+ Q+QMA V +AIE + L V+A TG GKT A + P++ KA Sbjct: 249 FP-YEYRKGQKQMAACVYKAIEGERRLFVQAPTGIGKTMAAMFPSV------------KA 295 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 L S+ +K + G L L + L + + + L Sbjct: 296 FATGLVSKIFYLTAKT---------IAGTVPDQALTLLREHGLKFSSVMLTAKEKICLNE 346 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTST---NDNCLGSDCPMYKDCFVVKARKKAMDA 191 + + ++ + ++T + + S Y+ C ++ A Sbjct: 347 TMECDAEHCPYAKGHFDRVNAALFEMITQEERMDREVIRSYAEKYRVCPFELGLDASLFA 406 Query: 192 DVVVVNHHLFLADMVVKESGFGELIPE--ADVMIFDEAHQLPDIASQYFGQSLSSRQLLD 249 D ++ +++ V + F + + V + DEAH L D AS + +L L Sbjct: 407 DTIIGDYNYVFDPRVNLKRFFSQTAYDTGRYVFLVDEAHNLVDRASSMYSATLYKEDFLA 466 Query: 250 LAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFL 309 + K + + ++ + + L + + E GY+ L + L Sbjct: 467 VKKLVKPYSKKLVRGLESCNRELLEL-------KKRCPEHGYQI----LNDIGVLYLKLL 515 Query: 310 LLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH-F 368 L T+E + K R +L+ F T + ++ Y + E TS F Sbjct: 516 QLHTTMETFLEDYKQIPERKEILEFYFALTTFL-----NIADLIDDSYVIYDELTSDGRF 570 Query: 369 TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL-GIEQAESLLLPSPFD 427 + L + A+ K + K S +F SAT+ ++ L + +++ +PSPFD Sbjct: 571 MVRLYCVHPANNLKLCL-DKGVSTVFFSATILPVK---YYMEMLSDTDTDQAIYIPSPFD 626 Query: 428 YSRQALLC---VLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF 484 ++ ++ V + + R +A +R + + + G + S+ M+R++ EQ Sbjct: 627 QKKRQIMVGVDVSTKYTRRSVKEYKR-VAEYIRHLFKVHPGNYMVFLPSYKMLREVYEQM 685 Query: 485 --RATMTLPVLLQG----ETSKGQLLQQFVSAGNALLVA--TSSFWEGVDVRGDTL--SL 534 + +L Q E + L+ F S N + F EG+D+ GD L S+ Sbjct: 686 TAEDCSVMELLCQEQNMKEADREAFLEHFSSQKNVVAFCIMGGIFSEGIDLTGDRLIGSV 745 Query: 535 VIIDKLPFTSPDDPLLK------ARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 V+ LP + ++ R + D F L + + Q GR+IR Sbjct: 746 VVGPGLPQVCNERKIMMDYFNTGKRTDTNADSSVDGFKYAYLYPGINKVFQSAGRVIRTE 805 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPPAP---RTRDIARAVRFLAIPSS 635 DD GV+++ D R Y + F A R + F Sbjct: 806 DDTGVILLLDERFGTGEYNSLFPVEWQDAVFGNFDRLAQKVENFWKREEE 855 >UniRef50_C4GAH1 Putative uncharacterized protein n=1 Tax=Shuttleworthia satelles DSM 14600 RepID=C4GAH1_9FIRM Length = 844 Score = 338 bits (868), Expect = 3e-91, Method: Composition-based stats. Identities = 112/664 (16%), Positives = 224/664 (33%), Gaps = 84/664 (12%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK 64 + A P + R Q+++A V ++I +G+ L ++A TG GKT + L PA+ Sbjct: 205 LRNESIRALDFP-YAYRPGQKKLASDVYRSIHRGKTLFIQAPTGAGKTLSVLFPAI---- 259 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 KA+ ++ R +K++ + + L G + Sbjct: 260 --------KAMGEKEADRIFYLTAKSVTRSVAKDSI---------HLLTDGGYRGKTTEI 302 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTN---DNCLGSDCPMYKDCFV 181 + LL+ S D + ++ + +TS + N + + C Sbjct: 303 VARDKMCLLQERSCNPEDCPYARGHFDRINAALYDCLTSRDLFDRNFIMEYAKQSQVCPF 362 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQS 241 A +D + +++ FGE E ++++ DEAH L D A Q + ++ Sbjct: 363 ELCLDLASFSDNIFCDYNYVFDPNASLTRFFGEGRREENLLLVDEAHNLVDRARQMYSET 422 Query: 242 LSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLAN 301 L L + ++ + + + +D+R+ L Sbjct: 423 LFYEDFHTLRRLFKGKNPKLMRAAGKCSRFFSDWTRDLEDYRI-------------LDNI 469 Query: 302 PQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY 361 A + + + + + +L+ F + + Y Sbjct: 470 DSFVLALMNVASCISVYLEEGPRLDEHEQILEIYFRIRYFL-----TVADWLDQRYRIVL 524 Query: 362 ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-AESL 420 E ++ L L + + + + S IF SATL + ++ L ++ ++ Sbjct: 525 EELGKNAALHLDCMDPSQLLGRRI-ELARSCIFFSATLLP---IRYYKDLLSADRQPYAV 580 Query: 421 LLPSPFDYSRQALLCVLRNLPQT---NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 S F Q L + ++ P + R+ A +R I A G + S+ M Sbjct: 581 YADSVF-KEEQHGLVIASDVSSRYQLRNPATYRRYADYIRRISHARQGNYMVFFPSYRFM 639 Query: 478 RDLAEQ--FRATMTLPVLLQ----GETSKGQLLQQFVSAGNALLVA----TSSFWEGVDV 527 ++ + VL+Q E ++ L + + L+A F EG+D+ Sbjct: 640 EEVYGEFLLPDQEDCEVLVQEREMSEENRESFLGRLQKKRKSTLLAFCVIGGIFSEGIDL 699 Query: 528 RGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRG------------------GDPFDEVQ 569 GD+L +I +P + + + R + F Sbjct: 700 PGDSLIGAVIVGMPLPQV-NRQTRILKDYFDSRSSFDEDTEGLPKGIRLRERKEGFAYAY 758 Query: 570 LPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTR---DIARA 626 L + + Q GR+IR DRG++ + D+R + Y F R ++ Sbjct: 759 LYPGMNKVLQAAGRVIRTERDRGIIALLDDRFLRGDYQDCFPREWKHYQRVSIGTVESQV 818 Query: 627 VRFL 630 +F Sbjct: 819 GKFW 822 >UniRef50_Q5HP88 Probable ATP-dependent helicase dinG homolog n=11 Tax=Bacilli RepID=DING_STAEQ Length = 902 Score = 338 bits (866), Expect = 5e-91, Method: Composition-based stats. Identities = 133/672 (19%), Positives = 249/672 (37%), Gaps = 69/672 (10%) Query: 8 DGQLAKAIPG------FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA-- 59 DG L R Q +A + + ++EA G+GK+ AYL A Sbjct: 233 DGTLKDLYKNVTQSLNLTYRPQQLYLAEIILDQLMHSDKAMIEAPLGSGKSLAYLLAATM 292 Query: 60 --LRAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL 117 + + V+IST +K LQ QL +D+P ++ L + N +L+K +++Y+ L L Q L Sbjct: 293 YNIETGRHVMISTNTKLLQSQLLEKDIPLLNDVLDFKINASLIKSKNDYISLG-LISQIL 351 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYK 177 ++ + L W +T GDI D + + P+ Sbjct: 352 KDDTNNYEVSILKMQLLIWITETNTGDIQELNLKGGQKMYV-------DQKIETYVPVRH 404 Query: 178 DCFVVKA-RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQ 236 D ++ A + + + NH + E+ +L + I DEAH+LPD A Sbjct: 405 DIHYYNYIKRNAQNIQIGITNHAHLIH--SDSENTIYQLFDDC---IIDEAHRLPDYALN 459 Query: 237 YFGQSLSSRQLLDLA--------------------KDITIAYRTELKDTQQLQKCADRLA 276 L+ + + I D L+ + L Sbjct: 460 QVTNDLNYSDVKYQLGLIGKNENEKLLKAVDKLEQQRILEKLDIAPIDVFGLKININELH 519 Query: 277 QSAQDFRLQLGEPGYRGNLRE-------LLANPQIQRAFLLLDDTLELCYDVAKLSLGRS 329 + + ++ + + + + L ++ ++ G + Sbjct: 520 DLNEQLFTTIYNIIQTSDVYDDDIHKYHYVYDFETGEILKDLRAIIDKLNKTIEIFNGMN 579 Query: 330 -ALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTS----RHFTLALTPLSVADKFKEL 384 + + ++ + K +++ + ++ + + L + V D + Sbjct: 580 HKTIKSVRKQLLYLHDKFKLIEQSIKDHHTSFISIKNLAQKSTIRLLVKDYDVKDILTKQ 639 Query: 385 MAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCVLRN---L 440 + +K S F S TL+ N F + + + + +P S + V + Sbjct: 640 VLEKFKSLTFISGTLTFNHSFKAFQNWFNEDIDFNTFEISTPLTSSNHTNVFVPNDVETY 699 Query: 441 PQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDL---AEQFRATMTLPVLLQGE 497 N + + I +C +L TS+ MM + + +L Q + Sbjct: 700 NYKNLDDYVASIVDYIVEYITVTQSKCLVLFTSYKMMHMVQDLLNELPELEDYVILTQQQ 759 Query: 498 TSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDC 557 +++QQF + ++L+ TS+F+EG D + + L V+I KLPF + + + Sbjct: 760 NQNYKIVQQFNNFDKSILLGTSTFFEGFDFQANGLKCVMIAKLPFMNKHN----IKYWLM 815 Query: 558 RLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPA 617 F + LPDAV +QG+GRLIR DD+G++V D+RLV Y + F SL Sbjct: 816 DSEFTSTFKDYVLPDAVTRFRQGLGRLIRHEDDKGLIVSFDDRLVNSTYKSFFAQSLEHF 875 Query: 618 PRTRDIARAVRF 629 + +F Sbjct: 876 K--QRKGNIKQF 885 >UniRef50_A0YBF9 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YBF9_9GAMM Length = 804 Score = 337 bits (865), Expect = 7e-91, Method: Composition-based stats. Identities = 116/637 (18%), Positives = 221/637 (34%), Gaps = 61/637 (9%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKKVIIS 69 A P + R+ QR +V+ +A+ L V+A TG GKT L PA++A + + Sbjct: 193 AFPYGEFRDGQRSFSVSSYRAMASAGQLFVQAPTGIGKTIGSLFPAIKAIAEGHHEKVFF 252 Query: 70 TGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSD 129 +K + + L + + L + + Sbjct: 253 LTAKTSGRAVAEKSLADMQEK-GLLLKTVTLTAKE-------------------KICFNP 292 Query: 130 VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAM 189 + G SV E S + + C + Sbjct: 293 GSPCDPEHCEYAVGYYDKLNSVIESS--LEATNYFKRDDIEHIARENTMCPFELSLDLLE 350 Query: 190 DADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLD 249 DVV+ +++ +V F + + E ++ DEAH L D F + +LL Sbjct: 351 WVDVVICDYNYVFDPVVYLRRLFDDPLVEHCFLV-DEAHNLVDRGRDMFSAQIEKDRLLS 409 Query: 250 LAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFL 309 + + + + E+ + + D + ++ R + + + P + Sbjct: 410 VKRQVKRSSSVEVGG---VLRKIDGINRAFLSIRKEHSHSLEQHGFSVVDEPPTV--LIS 464 Query: 310 LLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF- 368 L E D + R R + Y + + Sbjct: 465 KLRSFCEHLQHWLAEHERDGRDYDLLLD-LYFDALRFTRTADYFDDHYVCLIKTDKKKLL 523 Query: 369 TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ-AESLLLPSPFD 427 ++ L + + + + ++ S +F SATL+ ++++ LG+ ++ + LPSPF Sbjct: 524 SINLYCVDPSRLLGKGL-ERSKSSLFFSATLAP---INYYQQLLGVSPTSQFVDLPSPFP 579 Query: 428 YSRQALLCVLRNLPQ-TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF-R 485 + Q + V + GS ++A +++ +IE++ G + S+ M + + F + Sbjct: 580 HENQGVFVVKDIATNFKQREGSYNKIAVLIQTMIESHRGNYIVYFPSYQYMEKVYDVFGQ 639 Query: 486 ATMTLPVLLQ----GETSKGQLLQQFVSAGN----ALLVATSSFWEGVDVRGDTLSLVII 537 +++Q E S+ L +F +A V F EG+D++G L VII Sbjct: 640 QNSATDIIIQQRQMNEESRQCFLNRFDAAYEHDLVGFAVMGGIFGEGIDLKGLRLIGVII 699 Query: 538 --DKLPFTSPDDPLLKARMEDCR-------LRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 LP + L+K D R R + F+ + + Q GR+IR Sbjct: 700 IGVGLPQMGIERDLIKQHFRDTRVDDVVDQHRTNEGFNYAYQYPGMNRVLQTAGRVIRSE 759 Query: 589 DDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIAR 625 DRG++ + D R Y F P I + Sbjct: 760 QDRGIVCLVDERFASARYRQLFP---PHWTNLEVIDQ 793 >UniRef50_Q0VGM9 Regulator of telomere elongation helicase 1 n=22 Tax=Bilateria RepID=RTEL1_MOUSE Length = 1203 Score = 337 bits (864), Expect = 8e-91, Method: Composition-based stats. Identities = 115/755 (15%), Positives = 226/755 (29%), Gaps = 141/755 (18%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIIST 70 + P F+P Q++ V + ++K ++E+ TGTGKT L L ++ + + Sbjct: 9 VTVDFP-FQPYPCQQEYMTKVLECLQKKVNGILESPTGTGKTLCLLCSTLAWQQHLRDAV 67 Query: 71 GSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 S + +++ + + + + A Y + ++ + L Q++ ++ Sbjct: 68 SSLKIAERVQGELFASRTLSSWGSAAAASGDSIECYTDIPKIIYASRTHSQLT-QVIREL 126 Query: 131 ILLRSWSNQTVDGDISTC---VSVAEDSQAWPLVTSTNDNCLGSDCPMY----------- 176 V G V + ++ C Y Sbjct: 127 RNTAYRPKVCVLGSREQLCIHPEVKKQESNHMQISLCRKKVASRSCHFYNNVEAKFLEQD 186 Query: 177 ------------------KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPE 218 K C +R AD++ + ++ L K + + Sbjct: 187 LATPILDIEDLVKNGSKQKMCPYYLSRNMKQQADIIFMPYNYLLD---AKSRKAHSIDLK 243 Query: 219 ADVMIFDEAHQLPDIASQYFGQSLSSRQ-------LLDLAKDITIAYRT----------- 260 V+IFDEAH + I + L+ R + + ++ + Sbjct: 244 GTVVIFDEAHNVEKICEESASFDLTPRDVASGLEIINQVLEEQARVTQQGELQQEFIVDT 303 Query: 261 -------ELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN-LRELLANPQIQRAFLLLD 312 EL+D +L+ RL ++ +L + G + Q F Sbjct: 304 SSSGLNMELEDIAKLKMILLRLEEAIDAVQLPGDDRGVTKPGSYIFELFAEAQITFQTKG 363 Query: 313 DTLELCYDVAKLSLGRS------ALLDAAFERATLYRT---------------------- 344 LE + + GR+ A L + + + Sbjct: 364 CILESLDQIIQHLAGRTGVFTNTAGLQKLMDIIQIVFSVDPPEGSPGSLVGLGISHSYKV 423 Query: 345 ------RLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSAT 398 +R + + + + L+ S + +EL+ Q + I TS T Sbjct: 424 HIHPETSHRRAAKRSDAWSTT--ASRKQGKVLSYWCFSPSQSMRELVCQGVRTLILTSGT 481 Query: 399 LSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRN-----LPQTNQPGSARQ-- 451 L+ + I L P D ++ + V R L + + Sbjct: 482 LAPLSSFAL---EMQIPFPVCLENPHIIDKNQLWVGIVPRGPDGVQLSSAYDKRFSEECL 538 Query: 452 --LAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF-------RATMTLPVLLQGE--TSK 500 L L I + S+ +M E + + P+ ++ S Sbjct: 539 SSLGKALSNIARVVPHGLLVFFPSYPVMEKSLEFWQVQGLARKVEALKPLFVEPRNKGSF 598 Query: 501 GQLLQQFVSAGNA--------LLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKA 552 +++ + + L V EG+D VI+ LP+ DP + Sbjct: 599 SEVIDAYYQQVASPASNGATFLAVCRGKASEGLDFSDMNGRGVIVTGLPYPPRMDPRVVL 658 Query: 553 RMEDCRL-RGGDP-------FDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMR 604 +M+ RG E A + Q +GR+IR D G + +CD+R Sbjct: 659 KMQFLDEMRGRSGVGGQCLSGQEWYQQQASRAVNQAIGRVIRHRHDYGAIFLCDHRFAYA 718 Query: 605 PYGATFLASLPPAPRTRD-----IARAVRFLAIPS 634 A + + P + D I +F + Sbjct: 719 DARAQLPSWVRPYLKVYDNFGHVIRDVAQFFRVAQ 753 >UniRef50_Q03FN6 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03FN6_PEDPA Length = 929 Score = 337 bits (863), Expect = 1e-90, Method: Composition-based stats. Identities = 149/685 (21%), Positives = 255/685 (37%), Gaps = 78/685 (11%) Query: 18 FKPREPQRQMAVAVTQAIEK----GQPLVVEAGTGTGKTYAYLAP----ALRAKKKVIIS 69 R+ Q + Q + +V+EA TG+GKT YL P A ++KV++S Sbjct: 255 LSWRKLQGSIMNFTHQQFSVTEGFKKHVVIEAPTGSGKTLGYLFPLSYIAREQQRKVVVS 314 Query: 70 TGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSD 129 + LQ+Q+ + ++ L+ A+LKG SNYL LE + ++ L Sbjct: 315 VPTTILQNQVLAVGRQQLNAILETPMQFAILKGSSNYLNLEAFMK-SITHQTLSKDSRLV 373 Query: 130 VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAM 189 + + W +T GD S + L ++ F +A KK Sbjct: 374 AMKILVWLTKTDTGDFDEINHHINFSNFVDGIRHHGKTVLNPKSKFFEYDFYRRAMKKLK 433 Query: 190 DADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL- 248 AD ++ NH + E G + P +++ DEA P I S + L +L+ Sbjct: 434 YADFIITNHRYLA--LHADEIGESDQQP---LLVIDEAQHFPTIVSNMNQKFLDLNELMM 488 Query: 249 -------DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQL--------------- 286 L + K R S + Q+ Sbjct: 489 ETHRLVSRLVMNHKRNLIQATKHQPLAGFHIRRFVNSLEHINTQITEIQQKLFDKFVAPR 548 Query: 287 ---------GEPGYRGNLRELLANPQIQRAFLLLD------DTLELCYDVAKLSLGRSAL 331 E + N+ +A + + L D L+ + +L+ Sbjct: 549 KKNLYENQPAEIVIKNNVINQMAKHEFHQVVQELANTFIEFDALDRFFKDQELTPEIRDD 608 Query: 332 LDAAFERATLYRTRLKRLKEINQ--PGYSYWYECTSRH----FTLALTPLSVADKFKELM 385 + ++EI YW H + L + +++ + Sbjct: 609 WAQIKAFQSNLTKFYDAIREITDHLNQNIYWITLGPNHDPGSIRIGKEILDTGEFYRQKI 668 Query: 386 AQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES--LLLPSPFDYSRQALLCVLRNL--- 440 + TL +F + G+ + E+ D+ Q VL++ Sbjct: 669 EPFYHKVLLIGGTLFFEHKRSYFLDQFGLHKPETSIRTFRRGVDFENQLDFEVLQSDFTI 728 Query: 441 -PQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT---MTLPVLLQG 496 ++NQ A LA + + N + +L S +R++ + + + ++ QG Sbjct: 729 DYESNQDQYADFLAEAIEALTRDVNRQTLVLFNSLETLRNVYNRLHDSDLNESRRIIAQG 788 Query: 497 -ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARME 555 SK +++++F NA+L +SFWEGVD GD L +I+ +LPF SP+D +++ Sbjct: 789 IHGSKAKIIREFNDEENAILFGAASFWEGVDFPGDRLEYLIVTRLPFRSPEDRMVQ---- 844 Query: 556 DCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 R F LPDA++T KQG+GRLIR++DD GV V+ DNR++ + YG F+ LP Sbjct: 845 FARKNKRSSFMSFVLPDALLTFKQGIGRLIRNSDDTGVAVMLDNRIINKDYGKLFIKQLP 904 Query: 616 PAPRT------RDIARAVRFLAIPS 634 R F Sbjct: 905 SGVNANLGNINEVKERVNNFFNNQE 929 >UniRef50_B9SQD1 Regulator of telomere elongation helicase 1 rtel1, putative n=1 Tax=Ricinus communis RepID=B9SQD1_RICCO Length = 1049 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 106/737 (14%), Positives = 213/737 (28%), Gaps = 130/737 (17%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK------- 63 + P ++ + Q V Q+++ ++E+ TGTGKT L L + Sbjct: 9 IDVDFP-YEAYDCQLVYMEKVIQSLQSRCNALLESPTGTGKTLCLLCATLAWRKSLGPFT 67 Query: 64 ----------------------------KKVIISTGSKALQDQLYSRDLPTVSKALKYTG 95 ++ ++ + + Q+ K Y Sbjct: 68 TGKIERNGRTAGSKSDDTPPSPSEGTALPTIVYTSRTHSQLRQVVQEL-----KRSSYRP 122 Query: 96 NVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDS 155 + +L R LC+ ++ +L G V R T +S V ++ Sbjct: 123 KMVILGSREQ-LCIH--DEVSLLRGKAQTNACHYVCKRREKRQCTHFARVSD--YVRKNP 177 Query: 156 QAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGEL 215 D L + C +R+ D++ ++ + K ++ Sbjct: 178 HLGDEPVDIED--LVKMGRRFGPCPYYVSRELHKVVDILFAPYNYLIDRSYRKSL---KI 232 Query: 216 IPEADVMIFDEAHQLPDIASQYFGQSLSSR-------------QLLDLAKDITIAYRTEL 262 + ++IFDEAH L + + LSS +L ++ + Sbjct: 233 DWDKSILIFDEAHNLESLCADAASFDLSSGLLTACISEAKSCIELSVARREDSNDKSRNP 292 Query: 263 KDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN---LRELLANPQI-QRAFLLLDDTLELC 318 + L+ +L + + ++ + G+ + ELLA+ I L D +E Sbjct: 293 DNFAILKAILLKLEKRIAEVPIESKDLGFTRPGPYIYELLADLHITHETATKLTDIIEEA 352 Query: 319 YDVAKL------------SLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR 366 + + + F + R+ + Sbjct: 353 ALLLEEDKQNTAKGTVCRLESMGDIFKIIFREKSNAHANFYRVHVQEVEASASDSLRGKA 412 Query: 367 HFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPF 426 TL+ + +E S I TS TLS D L ++ L P Sbjct: 413 SRTLSWWCFNPGVAMEEFSRMGVCSIILTSGTLSPMDSF---AQELKLDFPIRLENPHVI 469 Query: 427 DYSRQALLCVL---------RNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 + V + + ++L + + S+ ++ Sbjct: 470 SSKQIWAGVVPVGPSGRSFNSSYRNRDSLEYKQELGNAIVNFARIVPDGLLVFFPSYYLL 529 Query: 478 RDLAEQFRA--------------TMTLPVLLQGETSK-----GQLLQQFVSAGNA----L 514 ++ PV+ ++S + + + Sbjct: 530 DQCIGCWKNVTHASSTTIWERICKHKQPVVEPRQSSLFPLAIEDYMAKLKDTSTSGAVFF 589 Query: 515 LVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLR---GGDPF------ 565 V EG+D T V+I +PF S +DP ++ + E + D + Sbjct: 590 AVCRGKVSEGLDFADHTGRAVMIIGMPFPSRNDPKVRLKREFLDEQLCLQRDAYKSQLLT 649 Query: 566 -DEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD-- 622 + A + Q VGR+IR D G ++ CD R + + P + Sbjct: 650 GESWYTQQASRAVNQAVGRVIRHRHDYGAIIFCDERFAHSNSQSQISLWIQPHIKCHSKF 709 Query: 623 ---IARAVRFLAIPSSR 636 + RF ++ Sbjct: 710 GDVVFTLSRFFRDGPTK 726 >UniRef50_B8BYI1 Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana RepID=B8BYI1_THAPS Length = 746 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 114/736 (15%), Positives = 210/736 (28%), Gaps = 135/736 (18%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKV---- 66 L P F+P + Q Q +V A++ ++E+ TGTGKT L AL ++ Sbjct: 4 LQVHFP-FRPYDVQTQYMKSVLNALQSSNHALLESPTGTGKTLCLLCSALAWQQGEKAKI 62 Query: 67 ---------------------------------------IISTGSKALQDQLYSRDLPTV 87 I ++ + + Q+ Sbjct: 63 RTSGVIATAPTVQPTGGDLSQNDGDGNAPALRTNKLPVIIYASRTHSQLSQVVREL---- 118 Query: 88 SKALKYTGNVALLKGRSNYLCLERLEQQALAGGDL-------PVQILSDVILLRSWSNQT 140 K +Y A+L R + ++ ++ L Sbjct: 119 -KNTRYRPKHAVLGSREHMCVHPKVNPLVAKAKSSANAAPVSSSEVNHGCNKLNKERKCM 177 Query: 141 VDGDIST-CVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHH 199 ++ + + L + YK C R DA+++ V ++ Sbjct: 178 FRNNLDEVLAGGEYEQPVLDM------EDLVTVGKQYKVCPFYHTRSLIKDAELIFVPYN 231 Query: 200 LFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYR 259 D +ES E+ V+IFDEAH L + AS+ LSS + ++ A + Sbjct: 232 YLF-DRDARESTLAEVDFANAVLIFDEAHNLEEFASESSSFDLSSSDIAGCVGEVQRAIQ 290 Query: 260 -----TELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDT 314 ++ D +++ RL F L + +GN + + Sbjct: 291 YLELNPDMGDGSKMKDNMLRLKSLFLRFEQYLLDGIMQGNQKMTSQGEVSHPGEYIFHVF 350 Query: 315 LELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWY------------- 361 E + + + ++ + W Sbjct: 351 REGAGITHANQAIFISFVRQVGDLIMEFKGNNASSGTPKLDHFGEWILLSSAKSYRVHVT 410 Query: 362 -------ECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI 414 + T++ + A +EL K S + TS TLS LG+ Sbjct: 411 KIDGNGGGGFAGGRTISYWCFAPALAMRELSFLKVRSILITSGTLSPLPSFSL---ELGL 467 Query: 415 EQAESLLLPSPFDYSRQALLCV----------LRNLPQTNQPGSARQLAAMLRPIIEANN 464 + L S Q + V + + P +L L + Sbjct: 468 DFPVQLENDHVIQ-SDQIFVRVLGKGVSGKELSSKFGRRDDPEYILELGNTLGSLCRNIP 526 Query: 465 GRCFMLCTSHAMMRDLAE--------------QFRATMTLPVLLQGETSKGQLLQQFVSA 510 G + S++ M + E + + + + + + +F Sbjct: 527 GGVLVFFPSYSAMYNCIENHFMTTSETSTPWKRLLTRKAIVIEPRSTSDLSDAIAEFKRF 586 Query: 511 ------GNALLV--ATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGG 562 L EG+D D V++ LPF DP +K + E Sbjct: 587 IALPKSPGCFLFGICRGKVSEGIDFSDDMCRAVVVTGLPFAPYLDPKVKLKREFLDAARA 646 Query: 563 D----------PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLA 612 E A + Q +GR+IR +D G +++ D+R + Sbjct: 647 SEKARPVPSTLSGAEWYNQQAHRAVNQAIGRVIRHRNDYGAVLLLDHRFAQQSNRDGLSK 706 Query: 613 SLPPAPRTRDIARAVR 628 + P R + A R Sbjct: 707 WIRPYLRDETVGTATR 722 >UniRef50_C4Z491 Putative uncharacterized protein n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z491_EUBE2 Length = 801 Score = 336 bits (861), Expect = 2e-90, Method: Composition-based stats. Identities = 110/637 (17%), Positives = 216/637 (33%), Gaps = 85/637 (13%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P ++ RE Q+ + V+V +AIE L ++A TG GKT + + PA++ A Sbjct: 189 FP-YEYREGQKNLCVSVYRAIEDSANLYIQAPTGVGKTLSTVFPAVQ------------A 235 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 L Q+ + SK + T L L + + + L Sbjct: 236 LGQQMADKIFYLTSKTITRTVA---------EDTYAILRDNGLHMRTVTLTAKDKICPLD 286 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTST---NDNCLGSDCPMYKDCFVVKARKKAMDA 191 + V + + + ++TS + + + C + + Sbjct: 287 ERNCNPVACPYAKGHFDRINDAVYDIITSQMVIGRDNVMEYANRHNVCPFEMSLDVSYWC 346 Query: 192 DVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLA 251 D ++ +++ + FG V + DEAH L D A + + L L Sbjct: 347 DGIICDYNYVFDPDASLKRYFGNGAKGDYVFLVDEAHNLVDRAREMYSAVLKKEDFLAAK 406 Query: 252 KDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLL 311 K + + + K + F + G + +L ++ Sbjct: 407 KLVKEMDKRLAGALDRCNKQLLEYKRQCDTFMVVSGLGTFPASLERVM------------ 454 Query: 312 DDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR-HFTL 370 ++ + K + LL+ F + + Y Y+ E + +F + Sbjct: 455 -GLMQKFMERHKGEPVTNELLEFFFAVRHFL-----NMYDCADEKYVYYNEHDNDGNFLV 508 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYS 429 L + + E + + S +F SATL + +F L + ++ S F+ Sbjct: 509 HLYCVDPSGNISERL-SQGRSTVFFSATLLPVN---YFKEMLSGDVSERAVYAHSSFEPD 564 Query: 430 RQALLCVLRNLPQTNQPGSARQLA---AMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA 486 + V ++ +AR+ A + +I +GR + S++ M + E FR Sbjct: 565 N-KRIVVATDVTSRYTRRNAREYAKVHDYIMHMISGRSGRYMVFFPSYSYMESVLECFRW 623 Query: 487 TMT-----------------LPVLLQG----ETSKGQLLQQFVSAGN------ALLVATS 519 + VL+QG E K L F V Sbjct: 624 ENGVNVTECGGEYTFLPESCVNVLVQGRFMKEADKESFLSAFYEELPEGASLAGFCVLGG 683 Query: 520 SFWEGVDVRGDTLSLVIID--KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITL 577 F EG+D++ ++L +I +P + +L+ + G + + + + + Sbjct: 684 IFSEGIDLKDESLIGAVIVGTGIPMVCRERNILR---DYFDEFGKNGYSYAYVIPGMNKV 740 Query: 578 KQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASL 614 Q GR+IR D+GV+ + D+R + Y + Sbjct: 741 LQAAGRVIRTDTDKGVIALLDDRFMTGEYERMYPREW 777 >UniRef50_C7H4L4 Putative helicase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4L4_9FIRM Length = 834 Score = 335 bits (859), Expect = 3e-90, Method: Composition-based stats. Identities = 128/681 (18%), Positives = 212/681 (31%), Gaps = 87/681 (12%) Query: 12 AKAIPGFKPREPQRQMAVAVTQAIEKGQ-------PLVVEAGTGTGKTYAYLAPALR--- 61 A P R QR +A V +A G+ L +A TG GKT + L PAL+ Sbjct: 183 ALQFPFPAYRPGQRALAGEVYRACAAGKAEQKGGTRLFCQAPTGIGKTMSALFPALKAMG 242 Query: 62 --AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAG 119 +K+ T Q + + L + CL + Sbjct: 243 EGKGEKIFYLTARNTTQAAAEDALARLRAADPALSLRSVTLSAKEK-ACLCK------DA 295 Query: 120 GDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDC 179 P + + + D S +A L ++ C Sbjct: 296 EGRPACLPEACPYANGYYERLKDALADLLDSAVPYDRA----------ALTETARRHRVC 345 Query: 180 FVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFG 239 + DVV+ +++ D V F + + + + DEAH LPD A + Sbjct: 346 PFELGLDLSEWCDVVIGDYNYLF-DPTVHLRRFFDAAGDY-IFLIDEAHNLPDRARAMYS 403 Query: 240 QSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELL 299 L D + I + + ++ + G +L Sbjct: 404 ARFCKSSLTDARRAIGKGKSALKTALTKADRGFLEARRAVTKLAPRRGPAPTESPAEDLT 463 Query: 300 A--------------------------------NPQIQRAFLLLDDTLELCYDVAKLSLG 327 ++ R L L+ + + Sbjct: 464 QQTSLLDTEPAEAAFPLPEPLLAQDGTVFLQELPKELLRLLFSLQAPLQDWLEANPEADA 523 Query: 328 RSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQ 387 + LL+ F + R E + L L A +A Sbjct: 524 HAQLLELYFA-----VQDITRAAERYDAHFVTQLTARGSELEWELLCLDPAPFVDASLAA 578 Query: 388 KPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLR-NLPQTNQP 446 + +F SATL+ ++ S LG A ++ L SPF L C+ + ++ Sbjct: 579 GRAAALF-SATLTPPG---YYRSVLGCPDARAVALESPFPPEHLGLYCLPGISTRYRDRE 634 Query: 447 GSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT-LPVLLQ----GETSKG 501 S + ++ L + A G S+A +R + E F A + L Q + ++ Sbjct: 635 ASVQAVSDALAALARAKVGNYLAFFPSYAYLRQVHEDFTARYPDIGTLAQESGLDDAARA 694 Query: 502 QLLQQFVSAGNALLVA----TSSFWEGVDVRGDTLSLVIIDK--LPFTSPDDPLLKARME 555 L+QF + L+ F EGVD+ GD L I LP +P +L+ Sbjct: 695 AFLEQFGPSPAKTLLGFGVMGGIFGEGVDLVGDRLIGCAIVGVGLPQVNPRQEILR---R 751 Query: 556 DCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLP 615 GG FD + + Q GR+IR +DRGV+++ D+R Y F Sbjct: 752 YYDEAGGTGFDYAYRFPGMNKVLQAAGRVIRTQEDRGVVLLLDDRFARGEYTRLFPRHWH 811 Query: 616 PAPRTRDIARAVRFLAIPSSR 636 R + LA +R Sbjct: 812 QLQYLRSTTELEQQLAAFWAR 832 >UniRef50_Q2YY51 Probable ATP-dependent helicase dinG homolog n=53 Tax=Staphylococcus RepID=DING_STAAB Length = 897 Score = 334 bits (857), Expect = 5e-90, Method: Composition-based stats. Identities = 140/657 (21%), Positives = 257/657 (39%), Gaps = 63/657 (9%) Query: 17 GFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKKVIISTGS 72 G R Q +A + + + ++EA G+GK+ AYL AL K V+IST + Sbjct: 248 GLTYRPQQLYLAETILDQLMHSEKAMIEASLGSGKSLAYLLAALMYNIETGKHVMISTNT 307 Query: 73 KALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVIL 132 K LQ QL +D+P +++AL + N L+K +S+Y+ L L Q L ++ + Sbjct: 308 KLLQSQLLEKDIPAMNEALNFKINALLIKSKSDYISLG-LISQILKDDTSNYEVNILKMQ 366 Query: 133 LRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA-RKKAMDA 191 L W +T GDI + D + + P D ++ A + Sbjct: 367 LLIWITETPSGDIQELNLKGGQKMYF-------DQKIETYVPARHDVHYYNFIKRNAQNI 419 Query: 192 DVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLD-- 249 + + NH + V E+ +L + I DEAH+LPD A LS + Sbjct: 420 QIGITNHAHLIHSDV--ENSIYQLFDDC---IVDEAHRLPDYALNQVTNELSYADIKYQL 474 Query: 250 -LAKDITIAYRTELKDTQQLQKCADRLA-------------QSAQDFRLQLGEPGYRGNL 295 L + D + Q+ ++L + QL + Sbjct: 475 GLIGKNENEKLLKAIDQLEKQRILEKLDIAPIDIFGLKASMNEIHELNEQLFSTIFTIIN 534 Query: 296 RELLANPQI-----------QRAFLLLDDTLELCYDVAKLSLGRS-ALLDAAFERATLYR 343 + + I + L ++ ++ G S + + ++ + Sbjct: 535 DSDVYDDDIHRFHNVFTFETKDILKDLHAIIDKLNKTLEIFNGISHKTVKSLRKQLLYLK 594 Query: 344 TRLKRLKEINQPGYSYWYECTS----RHFTLALTPLSVADKFKELMAQKPGSWIFTSATL 399 + K +++ + G++ + + L + +V D + + +K S IF S TL Sbjct: 595 DKFKNIEQSLKAGHTSFISIKNLSQKSTIRLYVKDYAVKDVLTKQVLEKFKSLIFISGTL 654 Query: 400 SVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCVLRN---LPQTNQPGSARQLAAM 455 N F + + + + ++ + + + N + + Sbjct: 655 KFNHSFDAFKQLFNKDVHFNTFEVNTSLQSAKNTSVFIPSDVASYQYKNIDEYVASIVSY 714 Query: 456 LRPIIEANNGRCFMLCTSHAMMRDL---AEQFRATMTLPVLLQGETSKGQLLQQFVSAGN 512 + + +C +L TS+ MM + + VL Q + +++QQF + Sbjct: 715 IIEYTTITSSKCLVLFTSYKMMHMVQDMLNELPEFEDYVVLTQQQNQNYKIVQQFNNFDK 774 Query: 513 ALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPD 572 A+L+ TS+F+EG D + + + V+I KLPF + + A+ F E LPD Sbjct: 775 AILLGTSTFFEGFDFQANGIKCVMIAKLPFMNKHN----AKYWLMDSEFTSTFKEYVLPD 830 Query: 573 AVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRF 629 AV +QG+GRLIR+ +DRG++V D+RL+ Y F +L + + +F Sbjct: 831 AVTRFRQGLGRLIRNENDRGIIVSFDDRLINSNYKNIFEQTLENYRQKK--GDIQQF 885 >UniRef50_A1AQ39 DEAD_2 domain protein n=7 Tax=Desulfuromonadales RepID=A1AQ39_PELPD Length = 807 Score = 333 bits (855), Expect = 9e-90, Method: Composition-based stats. Identities = 122/643 (18%), Positives = 219/643 (34%), Gaps = 56/643 (8%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK---KVIISTG 71 P PR Q + + + + +G+ ++++A TG GKT L P L+ + ++ Sbjct: 189 FPFATPRSGQVDLMRTIQEGMGEGRAMLLQAATGLGKTVGVLFPVLKEAFSRGQRVVYVT 248 Query: 72 SKALQDQLYSRDLPTVSKALKYTGNVAL-LKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 K Q + + +A ++ + KG+ +C D P+ Sbjct: 249 PKNSQHAVAEDAVDRFQQAGSKIRSLTITAKGK---ICF----------KDEPLCDPGYC 295 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMD 190 R + + + DI +A + Y+ C + + Sbjct: 296 EYARDYYEKLHENDI--LAILARKRRLKSR-------TFRQLGEQYQVCPFELQLDASRE 346 Query: 191 ADVVVVNHHLFLADMVV--KESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL 248 AD+V+ +++ A + + ++ DEAH LP A +Y+ LSS+ L Sbjct: 347 ADLVICDYNYVFAPRSALGRMTDMSIDQEGKPSLVIDEAHNLPGRAMEYYSPVLSSQHLE 406 Query: 249 DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAF 308 L + + K A +L G G LR Sbjct: 407 MLRHAMGDIHPP-------FNKEAQQLLDDCLATLTSCGGAGGSRPLRITPPLEPFLEQD 459 Query: 309 LLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF 368 L L D + +L F + R Q ++ W+ Sbjct: 460 ERLRALLNRYLDSGAEMGRQDPILGLCFSWSEFTRLLEYAADPERQEFFTTWH-PHGSGG 518 Query: 369 TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQ--AESLLLPSPF 426 + +T ++ KE A + SATL ++ G++ + PSPF Sbjct: 519 AVKITCCDASEMLKECYADYGQ-VVAFSATL---KPFDYYARLSGLDPESVRTAEFPSPF 574 Query: 427 DYSRQALLCVLR-NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR 485 + LL + + + + + + ++A +R I G + S + + E FR Sbjct: 575 PPELRKLLLIPQVSTRYSRREANYGKIADAVRRIAGGRRGNYLVFLPSFPFLERVLELFR 634 Query: 486 ATMTLPVLLQGETSK----GQLLQQFVSAGNA-LLVA--TSSFWEGVDVRGDTLSLVIID 538 VL Q K ++L++ + + +L A SF EGVD G+ + + Sbjct: 635 PPEGFVVLRQERDMKARQVEEVLERLRAGNSPTILFAVQGGSFSEGVDYAGEMVIGAFVV 694 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 P + D + R E + R G F A+ Q GR+IR DRG++V+ D Sbjct: 695 GPPLPNYDFQREQMR-EYYQKRYGAGFPYAYTIPAMARAVQAAGRVIRSETDRGLIVLMD 753 Query: 599 NRLVMRPYGATFL-ASLPPAPRT----RDIARAVRFLAIPSSR 636 +R + Y + R + F A SR Sbjct: 754 DRFMDPEYSSAMPADWFESDVRELVSGSILKDVEEFWAGTESR 796 >UniRef50_B8DGR4 Helicase c2 domain protein n=17 Tax=Listeria RepID=B8DGR4_LISMH Length = 779 Score = 333 bits (855), Expect = 1e-89, Method: Composition-based stats. Identities = 109/631 (17%), Positives = 214/631 (33%), Gaps = 59/631 (9%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P R QR++A+AV + + + L EA TG GKT + L P++ KA Sbjct: 182 FPYDNYRSGQRELAIAVYRTVASEESLFCEAPTGIGKTMSTLFPSV------------KA 229 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 + + + +K + L+ + ++ LA + + + L Sbjct: 230 MGEGKTDKLFYFTAKTITRQVA---------EDALDEMRRKGLAARSVTITAKDKICFLD 280 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTSTN---DNCLGSDCPMYKDCFVVKARKKAMDA 191 + + + + ++ + + S Y C + A+ Sbjct: 281 ERKCEPDHCQFARGYYDRLNEALFDMLQTEEAITRPIVESYARKYTLCPFELSLDVALFC 340 Query: 192 DVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLA 251 DV+V +++ +V + F E + ++ DE H L D A + +L ++ + Sbjct: 341 DVIVCDYNYLFDPVVYLKRFFAEGPGKYTFLV-DEVHNLVDRARSMYSATLKKSLVMQVK 399 Query: 252 KDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLL 311 + + K ++L + + + +L + + + L Sbjct: 400 R------GLDSKKNKRLLNAINAMNKEMIALNKKLKDLEKTI-YVQKDELGDWNASVLKF 452 Query: 312 DDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLA 371 + S ++ +L+ FE + E Y + + Sbjct: 453 TFVAKEWLPQNAQSESQADVLELYFESLRYVA-----IAEFYDDRYVTQVTRSHGDLEIK 507 Query: 372 LTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES-LLLPSPFDYSR 430 L A E + + S + SAT+ + ++T+ LG ++ S ++ SPF + Sbjct: 508 QLCLDPAFLLSEKL-KLGSSSVLFSATMRP---IDYYTNVLGGQEDTSRMIFSSPF-KQK 562 Query: 431 QALLCVLR--NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATM 488 L V + + S + L + G S ++ + + F+ Sbjct: 563 NMHLLVADYISTKYQMRENSMEAVVDALYALASGKKGNYLFFFPSFLYLQKVYDLFKEKY 622 Query: 489 T-LPVLLQ----GETSKGQLLQQFVSAGNALLVA----TSSFWEGVDVRGDTLSL--VII 537 + Q E + L+ F + LV F EGVD+RG+ L V+ Sbjct: 623 PNIRSQKQETAMDEEQREHFLENFQAGNEESLVGFCVLGGVFSEGVDLRGERLVGAAVVG 682 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 L + + L+K + G FD + + Q VGR+IR D GV+++ Sbjct: 683 VGLAQLNHESDLIK---DYYNETIGRGFDYAYQIPGMNKVLQAVGRVIRGESDCGVVLLI 739 Query: 598 DNRLVMRPYGATFLASLPPAPRTRDIARAVR 628 + R Y A F A A + R Sbjct: 740 EERFSADRYRALFPAHWNHAKTVKSTDDISR 770 >UniRef50_Q64EP0 Putative uncharacterized protein n=2 Tax=environmental samples RepID=Q64EP0_9ARCH Length = 644 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 124/645 (19%), Positives = 206/645 (31%), Gaps = 49/645 (7%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA---KKKVIIST 70 P RE QR+ V QA+E G L A TG GKT A L PAL+ K + Sbjct: 8 FFPFPSIREGQREFMEDVKQAVEGGNILAAHAPTGIGKTVAVLVPALQYAIQNDKTVFFL 67 Query: 71 GSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 SK Q ++ L + + K V + + + + L + Sbjct: 68 TSKRSQHKIAIDTLRLIKERAKLNFVVVDIISKQSMCPRAKAGSIYREFYSLFSEFCRSE 127 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMD 190 R V+ E++Q + L C C A + Sbjct: 128 QKNRRCR---------YFVNRDEEAQQRIRDKIMHVEELYEWCSFRGVCPYKAALEVGES 178 Query: 191 ADVVVVNHHLFL-ADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLD 249 ADV+V +++ +D+ E ++I DEAH LPD L + + Sbjct: 179 ADVLVCDYNYLFSSDIAETVLEKIGKGLEDVIVIVDEAHNLPDRIRNNLSSELRMSTITE 238 Query: 250 LAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQ-------LGEPGYRGNLRELLANP 302 A + R + +L+ +LA +A+ + + G LR + Sbjct: 239 AAHGLRRTNREIYDNLMELETIFAKLAMAARKNKKEEMNVDRDFLVDGMEKVLRRKIVAM 298 Query: 303 QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYE 362 L + E + +A L + + + Sbjct: 299 SYDDFVNSLRNIAERSGTSETDENTKYKD-EALQRNVLNIADFLDEWRTNEKCLRIFSVS 357 Query: 363 CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL-- 420 + + +L L + E S I S TL + + LG Sbjct: 358 QHNENPSLHFKLLDPS-IVSEPAFAGAHSTIMMSGTLCPAE---MYAEILGASSDRIKGK 413 Query: 421 -----LLPSPFDYSRQALLCVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCT 472 SPF + L+ V R L ++A + + E G + Sbjct: 414 EIVLREYKSPFPEENR-LIVVTRGLTTKYTKRGEEMYSKIAGKIAEVAEYVQGGMAVFFP 472 Query: 473 SHAMMRDLAEQFRATMTLPVLLQGETSKGQ----LLQQFVSAGNALLVA--TSSFWEGVD 526 S+A+ RD+A + +++ + + L + +L+A SF EG+D Sbjct: 473 SYALQRDIAVYLPEEVRRKAIVERREMRKEEKNRLYELLREDSGGILLAVQGGSFSEGMD 532 Query: 527 VRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGG--DPFDEVQLPDAVITLKQGVGRL 584 + L +I+ LP + P +K + G A+ + Q GR Sbjct: 533 FESNMLKAIIVVGLPLSPPTLE-VKTIEGYYAGKYGAEKGKLYGYYYPAITKVLQAAGRG 591 Query: 585 IRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRF 629 IR DR ++V+ D R PY LP + RA F Sbjct: 592 IRSEHDRCIIVLMDYRFAKYPYK----NCLPSDYNVKLTDRAEEF 632 >UniRef50_A9CS00 DNA repair helicase n=1 Tax=Enterocytozoon bieneusi H348 RepID=A9CS00_ENTBH Length = 670 Score = 332 bits (851), Expect = 3e-89, Method: Composition-based stats. Identities = 108/687 (15%), Positives = 223/687 (32%), Gaps = 105/687 (15%) Query: 9 GQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA------ 62 G P +KP Q Q + ++ + ++E+ TGTGK+ A L + Sbjct: 7 GGYTVWFP-YKPYPAQIQTMETMLKSFGSSKCALIESPTGTGKSLAILCAVMGYLEKKDL 65 Query: 63 -------------------------KKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNV 97 + I + + DQL ++ + KY + Sbjct: 66 NDIIDPKKRRIDNDTENFVNNNQIGNPTIYICSRTHKQIDQLINQL-----RKTKYNPRI 120 Query: 98 ALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQA 157 ++L R Y +L + D+I + ++ +S + Sbjct: 121 SILGSRKQYCINSQLRRALDI-----NTACKDLIDTKRCIYKSG---VSRLKKQISNIYD 172 Query: 158 WPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIP 217 + ++ C G C +R+ A +A+++ ++ + + K ++ Sbjct: 173 IEEIRNSGKKCGG--------CPYFASREIANEAEIIFAPYNYIIDPHIRKSL---DIEL 221 Query: 218 EADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQ 277 + ++I DEAH + D L+SR L ++ + R + ++ +L++ Sbjct: 222 KNAIVIIDEAHNIEDTCRSVGSFELNSRTLDIWMSELLSSARKAILLEGSIENDFLQLSE 281 Query: 278 SAQDFRLQLGEPGYRGN------------LRELLANPQIQRAFLLLDDTLELCYDVAKLS 325 + F+ ++ + + +L Q + L ++ D K Sbjct: 282 FIKKFKTKIDIQFEKSRDFHYKVFKGTYMIEQLKILGITQVSLNLFQSNIKNIRDNEKAK 341 Query: 326 LGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELM 385 S L E + + ++ + + + F L + F + Sbjct: 342 ALLSQNLQQGLESLDFVLKNILTNRAKDEYIFCFKQFVKDKSFAYCFWLLDPSIIFA-GL 400 Query: 386 AQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLC---------- 435 + S I S TL+ FTS L + L+ P S Q + Sbjct: 401 RNEVRSIILLSGTLTP---FATFTSELKVNFENKLIAPHIL-VSNQVFVANIKKGHLKTE 456 Query: 436 VLRNLPQTNQPGSARQLAAMLRPIIEANN--GRCFMLCTSHAMMRDLAEQFRATMTLPVL 493 + N P Q+A ++ I + G + S+ ++ L + + LPV+ Sbjct: 457 LTGTYSIANTPEYLSQIATIIENIATQIHIYGGTLVFVPSYVFLKKLHNKMK----LPVI 512 Query: 494 LQGE-TSKGQLLQQFVSAGN--------ALLVA--TSSFWEGVDVRGDTLSLVIIDKLPF 542 ++ + S + + N A+ EG++ + VI +P+ Sbjct: 513 VEPDTNSTEKFDATLIEYENKLKDSSHPAIFFCVYRGKASEGINFQDKYARAVIGIGIPY 572 Query: 543 TSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 S +DP + + E E + A+ + Q +GR++R D G + + + R Sbjct: 573 PSINDPQITTKKEYNSTIKNFGGSEWYMIQAIRAVNQALGRIVRHPGDWGAVFLLETRYQ 632 Query: 603 MRPYGATFLASLPPAPRTRDIARAVRF 629 P TR I F Sbjct: 633 TPQIRKQL-----PQWITRSIKDYDTF 654 >UniRef50_D1PL53 Putative helicase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PL53_9FIRM Length = 794 Score = 331 bits (849), Expect = 5e-89, Method: Composition-based stats. Identities = 126/648 (19%), Positives = 207/648 (31%), Gaps = 63/648 (9%) Query: 8 DGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR---AKK 64 +G P + R QR + AV G L+ +A TG GKT + L PAL+ Sbjct: 186 EGLRRLTFPFPEYRAGQRALIKAVYGTCRDGGQLLCQAPTGIGKTMSVLFPALKALEKGG 245 Query: 65 KVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPV 124 + T + AL RS+ L L L D Sbjct: 246 PIFYLTA----------------RGTTRTAAETALAILRSHDADL-SLRSVTLTAKDK-- 286 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKA 184 L + + G + ++ P +T+ L Y+ C Sbjct: 287 ICLQETRECTPDACPYAKGYYDRIKNALWNALDTPSLTAEGLQHLAHQ---YEVCPFELG 343 Query: 185 RKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSS 244 ++ +DVV+ +++ +V F + + DEAH LP A + SL Sbjct: 344 LDLSLWSDVVIGDYNYLFDPVVHLARFFESR--GDYLFLIDEAHNLPSRAREMHSASLCK 401 Query: 245 RQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELL----A 300 D K L+ +++ Q +R + E + Sbjct: 402 SSFWDAKK-------CLGSGKSSLKNALNKVNQIFISWRHRCEEESSDSRSGKTFFVKER 454 Query: 301 NPQIQRAFLLLDDTLELCYDVAKL-SLGRSALLDAAFERATLYRTRLKRLKEINQPGYSY 359 + RA L L + LE D + S ALL F+ R+ + + Sbjct: 455 AELLDRALLKLCEPLENWLDEHRDPSETHDALLQLYFDVRAWL-----RISDTFDDHFVL 509 Query: 360 WYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES 419 A+ L + K + + SATL+ + ++ G+ +A + Sbjct: 510 QIASHGSEVRAAMLCLDPSAFLAND-FSKGRAAVLFSATLAPAN---YYKDLCGLPEARA 565 Query: 420 LLLPSPFDYSRQALLCVLR-NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 + L SPF L C + ++ S Q++ ++ + A G S++ ++ Sbjct: 566 VALRSPFPARNLGLWCARHVSTRYKDRSASIPQVSDLIACLAGARTGNYLAFFPSYSYLQ 625 Query: 479 DLAEQFRATMT-LPVLLQ----GETSKGQLLQQFVSAGN----ALLVATSSFWEGVDVRG 529 + E F A L Q E + L F V F EGVD+ G Sbjct: 626 SVLEDFSARYPNFSTLCQQSSMDEAQRTVFLSHFKPNPPQTQIGFAVLGGVFGEGVDLTG 685 Query: 530 DTLSLVIIDK--LPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRD 587 D L V I LP P L+ + G FD + + Q GR+IR Sbjct: 686 DRLIGVAIVGPGLPQVGPRQEQLR---QHFEETCGSGFDYAYRYPGMNKVLQAAGRVIRT 742 Query: 588 ADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSS 635 D+GV+++ D+R L+ S Sbjct: 743 PQDKGVVLLIDDRFASPENRRLMPPHWDHLRLVNGTEPLRSELSAFWS 790 >UniRef50_A7SA32 Predicted protein n=3 Tax=Eumetazoa RepID=A7SA32_NEMVE Length = 1082 Score = 331 bits (848), Expect = 7e-89, Method: Composition-based stats. Identities = 117/756 (15%), Positives = 211/756 (27%), Gaps = 148/756 (19%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P FKP + Q V + ++ + V+E+ TGTGKT L L ++ + + Sbjct: 11 FP-FKPYDCQVAYMEKVIECLQTRKNAVLESPTGTGKTLCLLCATLAWRQSYV---ANLQ 66 Query: 75 LQDQ---LYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVI 131 LQ + + K+L A G + C + + + S + Sbjct: 67 LQQRGLCAAKEEEDGFQKSLGNKLAEA-ASGTWDDSCSNKGSNFEIPKIIYASRTHSQLS 125 Query: 132 LLRSWSNQTVD-------GDISTCVSVAE---DSQAWPLVTSTNDNCLGSDCPMY----- 176 TV G ++ V C Y Sbjct: 126 QAVQELKATVYRPRVSIIGSREQLCINSDVLKQDSNSAKVHMCRAKVTARTCHFYNNLEG 185 Query: 177 ------------------------KDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGF 212 K C AR+ AD++ + ++ L K Sbjct: 186 NKSNPAFTTEILDIEDLVRLGQKHKVCPYYMARELKTSADIIFMPYNYLLDPKSRKAHN- 244 Query: 213 GELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRT------------ 260 L +++FDEAH L + + L+S + +D+ + Sbjct: 245 --LDISGSIVVFDEAHNLEKVCEETVSFDLTSFDIASCVEDVLLCMEYVANAEDDPDIGE 302 Query: 261 -----ELKDTQQLQKCADRLAQSAQDFRLQLG-------------------EPGYRGNLR 296 + +D + L+ +L + +L +P + + Sbjct: 303 GGTDIDPEDLKVLKALFSKLEEEIDQIQLPSDGSKSFPGDFMFELLGNVGIKPNTKDRVL 362 Query: 297 ELLA--NPQIQRAFLLLDDTLELCYDVAKLSLGRSA-------------LLDAAFERATL 341 E L N + L+ D ++ ++ ++ ++ Sbjct: 363 ETLEKINTLLANGLRGKHFALQKFTDALQIVFNKTDKGPKSGNSFKVHVQVEPDSKKKQK 422 Query: 342 YRTRL---KRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSAT 398 +L + ++ + S K+LM+Q S I TS T Sbjct: 423 GLDIWTSGSKLSKKGTSSLYFYSFFMRTMIMIHYWCFSPGHAMKDLMSQGVSSVILTSGT 482 Query: 399 LSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQ----------TNQPGS 448 LS + + I L P Q ++ V+ P + PG Sbjct: 483 LSPLNSFTA---EMQIPFPIRLENPHVI-EKHQMMVAVVTKAPDGATLNSSYEFRSTPGY 538 Query: 449 ARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQ---------GETS 499 L + + S+ +M E ++ T L Q G+ Sbjct: 539 MTGLGNTIANFARTIPNGLLVFFPSYPVMNKCLEHWQNTGIWARLSQYKPMFAEPRGKGD 598 Query: 500 KGQLLQQFVSAGN--------ALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLK 551 Q ++ F + N V EG+D V+I LPF D +K Sbjct: 599 FVQTMEDFYAKINDPSLNGATFFAVCRGKVSEGLDFSDINGRAVVITGLPFPPMMDAKVK 658 Query: 552 ARMEDCRLRGGD--------PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 +M E A + Q VGR+IR D G +++CD R Sbjct: 659 LKMSFLDEMSRKDKSAIKGLTGREWYRQQASRAVNQAVGRVIRHRQDFGAILLCDVRFTY 718 Query: 604 RPYGATFLASLPPAPRT-----RDIARAVRFLAIPS 634 + + P + ++F Sbjct: 719 PDALRELPSWVKPQVKIFKEFGHVQRELIQFFRKAD 754 >UniRef50_UPI0000D55CB6 PREDICTED: similar to fanconi anemia group J protein n=1 Tax=Tribolium castaneum RepID=UPI0000D55CB6 Length = 750 Score = 330 bits (847), Expect = 9e-89, Method: Composition-based stats. Identities = 111/712 (15%), Positives = 214/712 (30%), Gaps = 119/712 (16%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK------- 63 + P F P + Q + V +E Q ++E+ TGTGKT + L +L Sbjct: 9 VPVKFP-FAPYDIQTKYMEKVIDCLENRQNGILESPTGTGKTLSLLCASLAWLEARREKF 67 Query: 64 ---------------KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLC 108 ++I ++ + Q + + +L R Sbjct: 68 AAQPKKCDDSPPITLPRIIYASRTHTQLSQAMQE----MKRTAYNHLKACVLGSRDQMCI 123 Query: 109 LERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC 168 + Q + ++ + Q S ++ + Sbjct: 124 DPEVIQ------EKNASFKVNLCRAKVKRKQCKYYQRIERASHVPPVSDLNIIDIEDVVK 177 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAH 228 LG +C C AR+ +DVV + ++ L + S ++ +++IFDEAH Sbjct: 178 LGRECDF---CPYHMARELKNRSDVVFMPYNYLLDP---RTSKNMDVEIFGNIIIFDEAH 231 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCA---------------- 272 + I + S + +D+ K ++ A Sbjct: 232 NIEKICEDSVSVQIKSSDVDSAVEDVESVNEVLTKGFVDVENVAFTSEDLQTFSQMLTKF 291 Query: 273 DRLAQSAQDFRLQLGEPGYRGN-LRELLANPQIQR--------AFLLLDDTLELCYDVAK 323 +R + F+L + G+ + E+ +I + + D + + + Sbjct: 292 NRELNGIKQFKLTQAGSVFDGDYIFEMFKKAEIFEENSSGISDLIVGVLDFMSTTSYIQR 351 Query: 324 LSLGRSALLDAAF--------ERATLYRTRLKRLKEINQPGYSYW------YECTSRHFT 369 G + F E + K E +P Y + + Sbjct: 352 SGFGLQIFNNLLFIAFYKQGPEFRQKIKECFKVQVEDERPEYVRRTRYSQNMDKKNTCRV 411 Query: 370 LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYS 429 L S LM + I TS TL+ S L +E + P Sbjct: 412 LNFWCFSPGFAMNMLMDRNIHCVILTSGTLAPLKP---LISELELEIGVRIENPH-IVKG 467 Query: 430 RQALLCVLRNLPQ----------TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 Q + +L P + P + L ++ +I + S+ +M+ Sbjct: 468 DQVCVKILSKGPDMEPLNSNFENRSNPKYLQSLGLVISNLIRVIPDGVLIFFPSYVIMQK 527 Query: 480 LAEQFRATMTL-------PVLLQGET------SKGQLLQQFV--SAGNALL--VATSSFW 522 E ++ T P+ ++ + + + + S A+ V Sbjct: 528 TIEHWQNDGTWDSINRTKPIYIEPKDKIEFATAMSEYYAKIQDPSYSGAIFMGVCRGKVS 587 Query: 523 EGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDP-----FDEVQLPDAVITL 577 EG+D V I LP+ DP + + + R D+ +A + Sbjct: 588 EGLDFADINGRAVFITGLPYPPLKDPKIILKKQYLDFRYSKNKEYLKGDDWYSLEATRAI 647 Query: 578 KQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIARAVRF 629 Q +GR+IR D G +++ D+R +L R + I F Sbjct: 648 NQAIGRVIRHKSDYGAIILLDSRFTNPR----IKNNLSLWLR-QHITDMKNF 694 >UniRef50_UPI00015B5E86 PREDICTED: similar to regulator of telomere elongation helicase 1 rtel1 n=1 Tax=Nasonia vitripennis RepID=UPI00015B5E86 Length = 1050 Score = 329 bits (844), Expect = 2e-88, Method: Composition-based stats. Identities = 107/717 (14%), Positives = 215/717 (29%), Gaps = 133/717 (18%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTY--------------------- 53 P FKP + Q V + +++G+ V+E+ TGTGKT Sbjct: 13 FP-FKPYQVQEDYMKKVIECLQEGKNGVLESPTGTGKTLSLLCSSLGWLMIKKAQIQIQV 71 Query: 54 -------------AYL-----------------APALRAK---KKVIISTGSKALQDQLY 80 +YL AP K+I ++ + + Q Sbjct: 72 QSLGALDQVGSGNSYLDQFAKSLDKGGGKSTNQAPTNTFGWSMPKIIYASRTHSQLSQAM 131 Query: 81 SRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQT 140 + + +V +L R + ++ + + + N Sbjct: 132 QE----LKRTSYRHVSVTVLGSRDQLCIHPEVAKEQNTSNKIHMCQAKIKARNCFYYNNV 187 Query: 141 VDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHL 200 +D + D L K C +++ +AD++ + ++ Sbjct: 188 E--------LRKDDPTIKDNILDIED--LVKTGQKLKCCPYFLSKELKQNADIIFMPYNY 237 Query: 201 FLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRT 260 L K G + + +V++ DEAH + + +SS + +IT + Sbjct: 238 LLDPKTRKNQG---IELQNNVVLLDEAHNVEKMCEDAASLQISSTDIAVCIDEITHVMKD 294 Query: 261 ELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYD 320 +T D L++ + + ++ FL L+ ++ Sbjct: 295 MANETND----QDFLSEGSNAAQKDFSAEDLCI----------LKAMFLELEKAIDSIQ- 339 Query: 321 VAKLSLGRSALLDAAFERATLYRTR--LKRLKEINQPGYSYWYECT---SRHFTLALTPL 375 + K G + FE + L + + ++ Sbjct: 340 ITKRDEGDTYPGGYIFEILEKADITQGKELLVIDKLDKIVTYLTTKITKTDGKLISYWCF 399 Query: 376 SVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLC 435 S ++L+ Q S I TS TLS S +GIE L P ++Q + Sbjct: 400 SPGFGMQQLLDQGVRSVILTSGTLSPLKPF---ISEIGIEIGAQLENPH-IVSNKQICVG 455 Query: 436 VLRNLPQ----------TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR 485 ++ N N P L ++ + + S+ +M+ E+++ Sbjct: 456 IISNGYDGCSLNSSYNTRNDPKYIASLGETIKILSCILPHGMLIFFPSYPIMKKCQEEWQ 515 Query: 486 ATMTLP---------VLLQGETSKGQLLQQFVS------AGNAL--LVATSSFWEGVDVR 528 V Q + ++ ++ A+ V EG+D Sbjct: 516 KMGKWSQIEASKPIFVEPQSKEGFNNVMTEYYKKIHDPAHKGAIFMAVCRGKVSEGLDFA 575 Query: 529 GDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDP-----FDEVQLPDAVITLKQGVGR 583 V+I LPF DP + + + +A + Q +GR Sbjct: 576 NANGRAVLITGLPFPPLKDPRIILKQRYLEENRASGKESLSGQQWYQLEASRAVNQAIGR 635 Query: 584 LIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT-----RDIARAVRFLAIPSS 635 +IR +D G +++CD R + + + P + + F ++ Sbjct: 636 IIRHKNDYGAILLCDCRFDNPSFKQHLSSWIRPHIKKFQDFRMVVKELREFFRYTTA 692 >UniRef50_Q9NZ71 Regulator of telomere elongation helicase 1 n=42 Tax=Bilateria RepID=RTEL1_HUMAN Length = 1219 Score = 329 bits (843), Expect = 2e-88, Method: Composition-based stats. Identities = 125/768 (16%), Positives = 222/768 (28%), Gaps = 167/768 (21%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKK----- 65 + P F+P + Q++ V + +++ ++E+ TGTGKT L L ++ Sbjct: 9 VTVDFP-FQPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWREHLRDGI 67 Query: 66 -----------------------------------------VIISTGSKALQDQLYSRDL 84 +I ++ + + Q+ + Sbjct: 68 SARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQVINEL- 126 Query: 85 PTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGD 144 + Y V +L R +++Q + + + N + Sbjct: 127 ----RNTSYRPKVCVLGSREQLCIHPEVKKQESNHLQIHLCRKKVASRSCHFYNNVEEKS 182 Query: 145 IS-TCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLA 203 + S D L ++ C +R AD++ + ++ L Sbjct: 183 LEQELASPILDI-----------EDLVKSGSKHRVCPYYLSRNLKQQADIIFMPYNYLLD 231 Query: 204 DMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLL-------DLAKDITI 256 K + + V+IFDEAH + + + L+ L + ++ T Sbjct: 232 ---AKSRRAHNIDLKGTVVIFDEAHNVEKMCEESASFDLTPHDLASGLDVIDQVLEEQTK 288 Query: 257 AYRT------------------ELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN---L 295 A + EL+D +L+ RL + L + G + Sbjct: 289 AAQQGEPHPEFSADSPSPGLNMELEDIAKLKMILLRLEGAIDAVELPGDDSGVTKPGSYI 348 Query: 296 RELLANPQIQ----------------------------RAFLLLDDTLELC--YDVAKLS 325 EL A QI L D +++ D ++ S Sbjct: 349 FELFAEAQITFQTKGCILDSLDQIIQHLAGRAGVFTNTAGLQKLADIIQIVFSVDPSEGS 408 Query: 326 LGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELM 385 G A L A + + R L+ S EL+ Sbjct: 409 PGSPAGLGALQSYKVHIHPDAGHRRTAQRSDAWSTTAARKRGKVLSYWCFSPGHSMHELV 468 Query: 386 AQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRN-----L 440 Q S I TS TL+ + I L P D + + V R L Sbjct: 469 RQGVRSLILTSGTLAPVSSFAL---EMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQL 525 Query: 441 PQTNQPGSARQ----LAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT--------- 487 + + L L I + S+ +M E +RA Sbjct: 526 SSAFDRRFSEECLSSLGKALGNIARVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEAL 585 Query: 488 MTLPVLLQGETSKGQLLQQFVSAGNA--------LLVATSSFWEGVDVRGDTLSLVIIDK 539 L V + + S + + + + A L V EG+D VI+ Sbjct: 586 KPLFVEPRSKGSFSETISAYYARVAAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTG 645 Query: 540 LPFTSPDDPLLKARMEDCRLRGGDPF--------DEVQLPDAVITLKQGVGRLIRDADDR 591 LP+ DP + +M+ G E A + Q +GR+IR D Sbjct: 646 LPYPPRMDPRVVLKMQFLDEMKGQGGAGGQFLSGQEWYRQQASRAVNQAIGRVIRHRQDY 705 Query: 592 GVLVICDNRLVMRPYGATFLASLPPAPRTRD-----IARAVRFLAIPS 634 G + +CD+R A + + P R D I +F + Sbjct: 706 GAVFLCDHRFAFADARAQLPSWVRPHVRVYDNFGHVIRDVAQFFRVAE 753 >UniRef50_A9KRY0 DEAD_2 domain protein n=2 Tax=Clostridiales RepID=A9KRY0_CLOPH Length = 852 Score = 326 bits (836), Expect = 2e-87, Method: Composition-based stats. Identities = 118/639 (18%), Positives = 223/639 (34%), Gaps = 66/639 (10%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P F+ R QR + V + I + + L +EA TG GKT + + P + KA Sbjct: 260 FP-FEYRPGQRDLVTGVYRTIIRDKKLYIEAPTGVGKTISTVFPTV------------KA 306 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 + + S+ +K + T + L ++ L+ + + + +L Sbjct: 307 MGEGFVSKIFYLTAKTITRTVA---------EDTYQLLLERGLSMKLVTITAKDKICILD 357 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTSTND---NCLGSDCPMYKDCFVVKARKKAMDA 191 + + + + + L+TS + + + C + A Sbjct: 358 KPNCNPAACERAKGHYDRVNDAVFDLLTSESRISRELIEQYAMKHCVCPFEMCLDVTLWA 417 Query: 192 DVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLA 251 D ++ +++ V F + V + DEAH L D A + + L + L + Sbjct: 418 DGIICDYNYAFDPNVYLRRFFENDKKQDYVFLIDEAHNLVDRAREMYSAMLYKQDFLTVK 477 Query: 252 KDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLL 311 + +T +K + + RL + ++ L + L L Sbjct: 478 GIVKDKSKTMVKRLEACNEVMLRLKRGCD-------------DIEVLQDVNDLVLPLLRL 524 Query: 312 DDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRH-FTL 370 E + GR + + + +I Y + + R F + Sbjct: 525 MSEYEEFFKEYGDFEGRE-----VVSQLFFDLRKFLAIHDILGEDYLIYSDYDERGEFRV 579 Query: 371 ALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL-GIEQAESLLLPSPFDYS 429 L + A + K S IF SATL + ++ +L G E+ ++ PSPF+ S Sbjct: 580 KLLCMDPARNLLTCL-NKGRSSIFFSATLLP---ITYYKEQLGGSEEDYAIYAPSPFEVS 635 Query: 430 RQALLC---VLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA 486 ++ L+ V + Q ++ + + + A G F+ S+ M++ +A+ Sbjct: 636 KRLLMIAKDVSTKYTRRGQDEY-ERIVSYIEGFVNAKVGNYFVFFPSYQMLQQIAQLSED 694 Query: 487 TMTLPVLL---QGETSKGQLLQQFVSAGN----ALLVATSSFWEGVDVRGDTLSLVIID- 538 + +L GE K + L F V F EG+D++ D L +I Sbjct: 695 RIPNLLLQKTSMGELEKEEFLAAFEENPTNTKVGYCVMGGIFSEGIDLKKDRLIGAVIVG 754 Query: 539 -KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 LP + L + R G FD L + + Q GR+IR +D+G +++ Sbjct: 755 TGLPQVGNERELFRG---YYDDRNGSGFDHAYLYPGINKVLQSAGRVIRTVEDKGAILLL 811 Query: 598 DNRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR 636 D R + Y F + L S+ Sbjct: 812 DERFLNSQYKNLFPREWEQYDIVNQ-EKMQELLEDFWSQ 849 >UniRef50_D0R432 ATP-dependent DNA helicase DinG n=29 Tax=Lactobacillus RepID=D0R432_LACJF Length = 938 Score = 326 bits (835), Expect = 2e-87, Method: Composition-based stats. Identities = 136/671 (20%), Positives = 263/671 (39%), Gaps = 82/671 (12%) Query: 16 PGFKPREPQRQMAVAVTQAI--EKGQPLVVEAGTGTGKTYAYLAPA---LRAKKKVIIST 70 + R Q + + + + LVVEA G+GKT++YL L + +K++++T Sbjct: 257 KNLRFRRGQVSLINRLHDFVYSDSDNSLVVEAPNGSGKTFSYLMAYAYELYSGRKLVVAT 316 Query: 71 GSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 +K LQ+Q+ +++P + + + + ++K S+YL L+ + Q L Sbjct: 317 PTKVLQEQILKQEIPQLLRVTRLDLDAQIVKSSSHYLDLDGFYNSLYQTDNPIQQTLILQ 376 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMD 190 + + W +T GD+ + + + D +G+ + F AR + Sbjct: 377 MGILIWLTETETGDLDELQLTNYQAPLFAAIEHPGDARIGT--SFAEYDFWNLARSRQEQ 434 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQL-PDIAS------QYFGQSLS 243 AD+++ NH + + + ++ DE+H+ ++AS Q+ Sbjct: 435 ADILITNHAYLANHYM------DSIWGQNPFLVVDESHRFVENVASSRNDSLQFESFWGM 488 Query: 244 SRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQ-------SAQDFRLQLGEPGYRGNLR 296 L +L + + + + + D+L + S + + Sbjct: 489 CSHLRNLLFYAEDSAKARFGNNLEFKLILDKLEKDTNDLIHSINKIQQAFYDNRKFATSW 548 Query: 297 E----------------LLANPQIQRAFLLLDDTLELCYD-------------------- 320 E + L+ D +E+ Sbjct: 549 EEKRQNAITLGFQGQDLFNNIKHFKHLLNLMQDNIEIVRQETNQLLFLLYHQQKNLLTND 608 Query: 321 --VAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTP--LS 376 + + LD E+ L +L K+++ G+ + LT L Sbjct: 609 DVLIRDLQEEIDQLDYYSEQNYLLLDQLSDPKKLDHEGFVLEISNEDDPLSTNLTWLTLD 668 Query: 377 VADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL--LLPSPFDYSRQALL 434 ++ K+ + +F SATL+ DD + L ++ ++L F + + Sbjct: 669 PEEEVKQ-LYHYFDKKLFISATLAEQDDFSYTIKNLYLDPKKTLTYRAKPSFKVEKHLKV 727 Query: 435 CVLRN---LPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT---- 487 L + N P ++ +L I + + +L T+ ++RD+ + Sbjct: 728 YALSDNNAPEDPNSPEYETFISNLLTQIKDYRH--VLVLFTNLDVIRDVFSRLSENSNAL 785 Query: 488 MTLPVLLQG-ETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPD 546 +L QG S ++ ++F A A+L+ +SFWEG+D + + + L I+ +LPF SPD Sbjct: 786 KDYEILAQGLTGSNEKIAKRFGIAEKAILLGANSFWEGIDFKHNGVDLAIVTRLPFESPD 845 Query: 547 DPLLKARMEDCRLRGG--DPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMR 604 P +K R E + + G F+ LP A++ +QG GRLIR+ D GV V+ D R+ + Sbjct: 846 QPEVKLRTECLKKQVGADKIFEVDTLPRAILRFRQGCGRLIRNERDHGVFVVLDQRVWNK 905 Query: 605 PYGATFLASLP 615 YG FL+ LP Sbjct: 906 SYGEQFLSGLP 916 >UniRef50_Q2LUZ3 ATP-dependent helicase, dinG family n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LUZ3_SYNAS Length = 917 Score = 325 bits (834), Expect = 3e-87, Method: Composition-based stats. Identities = 158/662 (23%), Positives = 264/662 (39%), Gaps = 83/662 (12%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA-----KKK 65 LA A GFK R+ Q A V +A+ G L +EAGTGTGKT YL P + + + Sbjct: 258 LAGAAQGFKFRKTQLDYAFHVAEALNDGAVLTLEAGTGTGKTQGYLIPVMEYLHRNPEAR 317 Query: 66 VIISTGSKALQDQLYSRDLPTV--SKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP 123 ++IST +K+LQDQ++ +++ + ++A+LKG+SNYLC E+L Sbjct: 318 IMISTYTKSLQDQIFQQEINRTVALERGYSKISIAVLKGKSNYLCAEKLNSAFEEDLKGA 377 Query: 124 VQILSDVILLRSWSNQTVDGDI--STCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 + + + + VDG+ D + G + C Sbjct: 378 SLLAWLYFVNLIFLYRQVDGETVGEKIGRYLNDGLYLRQLQDEISAKTGCAG-NHTLCPA 436 Query: 182 VKARKKAMDADVVVVNHHLF-LADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQ 240 A +A A +V+ NHH L D + SG I DEA+ F Sbjct: 437 QVALAEARSARLVITNHHKLALIDHDEELSGLFRNC------IVDEANHFEQAVRNAFSL 490 Query: 241 SLSSRQLLDLAKDITIAYRTELKD--------TQQLQKCADRLAQSAQDF---RLQLGEP 289 S+ SR++ D+ + + + QQ + + Q+ +F + Sbjct: 491 SVHSREITDIIAYLESVLQRVSRKVSGEVEMMLQQCHETINEFHQTVHEFGSMLQTIHPY 550 Query: 290 GYRGNLRELLA------NPQIQRAFLLLDDTLE------------LCYDVAKLSLGRSAL 331 +G + EL + I++ L D L V K+ Sbjct: 551 FAKGEILELPVCHGAYPDGDIEKMLRLFADLLRGIGKGLSFLKDPDASRVLKILPRSQER 610 Query: 332 LDAAFERATLYRTRLKRLKEINQ-PGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPG 390 + A R + +++ + + +H+ + ++ + V+ K + K Sbjct: 611 VRNAIARLYTEADNFQTMEKTIRTENTVAACQLFFKHWVITVSAVDVSSLIKAHVYNKRD 670 Query: 391 SWIFTSATLSVNDDLHHFTSRLGIEQA-------------------------ESLLLPSP 425 I+TSATL + + F +G++ A + +PSP Sbjct: 671 CVIYTSATLRHRNRFNDFCRIVGMDDATGCDSISPAGKEDRTFFTDQDGREFRFVAIPSP 730 Query: 426 FDYSRQALLCVLRNLP---QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAE 482 + + + N+ + + +L +I N GR +L +S++ + +A Sbjct: 731 YSLES-MKVFLPDGAVNGGYENKQAWLKAVVDLLPELIRKNRGRTLVLFSSYSDLEAVAL 789 Query: 483 QFRATM---TLPVLLQGET-SKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIID 538 Q + P+L+Q G L+ +F S ++L +FW GVD RGDTL+ VII Sbjct: 790 QTGDEIIADGYPLLIQQMGRPTGNLIDEFRSIRESVLFGVETFWYGVDFRGDTLTQVIIT 849 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 ++PF P DPL AR + F +A+I LKQG+GRLIR D+G LV D Sbjct: 850 RIPFPYPFDPLQTARKGSL---SKEEFWSRYYYEAIIKLKQGMGRLIRSETDKGRLVFLD 906 Query: 599 NR 600 +R Sbjct: 907 SR 908 >UniRef50_UPI00017937E6 PREDICTED: similar to regulator of telomere elongation helicase 1 rtel1, partial n=2 Tax=Acyrthosiphon pisum RepID=UPI00017937E6 Length = 967 Score = 325 bits (833), Expect = 4e-87, Method: Composition-based stats. Identities = 106/740 (14%), Positives = 215/740 (29%), Gaps = 145/740 (19%) Query: 5 FAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA-- 62 F G L P ++P E Q++ V + ++ G V+E+ TGTGKT + L +L Sbjct: 4 FECRGVLVD-FP-YEPYEVQKRYIEKVLECLQNGHNGVLESPTGTGKTLSLLCSSLAWLL 61 Query: 63 -----------------------------------------KKKVIISTGSKALQDQLYS 81 ++I + + +Q+ Sbjct: 62 AKKAAIQANRMCPTESNLTISINTAAGVDKNPNSAWNGVIRPPRIIYGSRTHTQLNQVMK 121 Query: 82 RDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTV 141 + + V ++ R + ++A + + + + N Sbjct: 122 E----LRRTNYKHMKVGIIGSRDQLCIHPEVTKEATSSVKIALCRAKVSTRTCQFYNNVE 177 Query: 142 DGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLF 201 ++D+ + D L + + C +R+ D D++ ++ Sbjct: 178 --------LKSKDAFVENGIADIED--LVNKGKKFNCCPYYGSRELQKDVDILFTPYNYI 227 Query: 202 LADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTE 261 + K ++ DV+I DE H + + + +SS + +T + Sbjct: 228 IDPRTRKAQ---DIQFSDDVIILDEGHNVEKMCEESCSVDISSTDIALCIDAVTDIMKQL 284 Query: 262 LKDTQ----------------------------QLQKCADRLAQSAQDFRLQLGEPGYRG 293 + +++K D + + ++ Sbjct: 285 YDEKNTEFSTEPIQLKPREFSDDDICVLKALFLEIEKVIDGIELTNSTNDKKMEGSYIFK 344 Query: 294 NLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEIN 353 L+ P F+ ++ L + + A ++ L+ L Sbjct: 345 LLQGADITPSNMSKFISFLSSVTLYMSSSNSNAPHQAKEACLYKFQQFLECVLQSLGTNG 404 Query: 354 QP-----GYSYWYECT----------------SRHFTLALTPLSVADKFKELMAQKPGSW 392 P + + + + TL S ++L+ + Sbjct: 405 DPKNTDKYFRTYIQLEQSKYKPKNDSIKLKEFKKGKTLNFWCFSPGFGMRDLLDRNVRCI 464 Query: 393 IFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQ---------- 442 I TS TLS L S +GI L + Q + V+++ P Sbjct: 465 ILTSGTLSP---LAATISEIGIPVKVQLQNAHVI-KNSQVCVSVIKSGPSNKPLICNYTS 520 Query: 443 TNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRA-------TMTLPVLLQ 495 N L L G + S+ + ++ T + ++ Sbjct: 521 RNNSDFLTSLGQTLVNFSRIIPGGTLVFFPSYPFLDQCVNHWQGCNIWASITKNKSIFVE 580 Query: 496 GETS------KGQLLQQFVSAGNALLVA--TSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 + + + A+L+A EG+D VII LP+ D Sbjct: 581 PKNKDVLNSVIEEYYKAIQENKGAILLAVYRGKVSEGLDFSDWKARAVIILGLPYPPYQD 640 Query: 548 PLLKARMEDCRLRGGD-----PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 P + + E + E +A+ + Q +GR+IR D G ++ CD R Sbjct: 641 PRVVMKREYLDEMRKENSQCLSGQEWYKLEAIKAVNQAMGRVIRHIGDWGSIIFCDERYA 700 Query: 603 MRPYGATFLASLPPAPRTRD 622 + A L P + D Sbjct: 701 SFNIKSQLSAWLQPHIKIYD 720 >UniRef50_B3W8P1 Superfamily II DNA and RNA helicase n=11 Tax=Lactobacillus RepID=B3W8P1_LACCB Length = 794 Score = 325 bits (832), Expect = 4e-87, Method: Composition-based stats. Identities = 120/640 (18%), Positives = 218/640 (34%), Gaps = 60/640 (9%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P + R Q ++A AV +AI L V+A TGTGKT + L P L KA Sbjct: 187 FPFPQFRAGQHELAAAVYKAIYSQARLFVQAPTGTGKTISALFPTL------------KA 234 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 + L R +K R + + Q L + + + Sbjct: 235 MGTGLIQRAFYLTAKQSTR---------RVAEQAMALMAQAGLTAKSITLTAKDTITFAD 285 Query: 135 SWSNQTVD----GDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMD 190 + + + G D + + ++ + ++ Sbjct: 286 EPDDPSKNPYMLGYYDRLKPALHD--LLEHEDQLTRPVIETYARKHRLDPFEFSLDASLF 343 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 DV++ +++ D +V F +++ + DEAH L A + +++ + + L Sbjct: 344 CDVIICDYNYLF-DPLVFLQRFFSEKDDSNFFLIDEAHNLVSRARDMYTAAITDQDFVQL 402 Query: 251 AKDITIA-YRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFL 309 K +T K + + + + L + L +L A + R Sbjct: 403 KKALTPYKGAPLTKVRRAMTRILNTLDATTSTLLTSQPTIFQDDPLDDLTA--VLFRFTE 460 Query: 310 LLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFT 369 ++ D L + +D + R+ + + + Sbjct: 461 VVHDWLS-----EPPTPALQPAVDLVLP-VFFLANQYLRIGDFYDATFKTEVTKENGQIM 514 Query: 370 LALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLG-IEQAESLLLPSPFDY 428 + L + E + +K + SATLS + +F LG I+ + + LPSPFD Sbjct: 515 VKELCLDPSQFVDEAL-KKGRGAVLFSATLSP---MAYFQKLLGGIDNSLAYTLPSPFDP 570 Query: 429 SRQALLCVLR-NLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQF-RA 486 ++QA++ N + QL A L ++ +G S+A ++ E F A Sbjct: 571 AKQAVIVDASVNTTYRRRTQDLPQLIASLTTLVRTKSGNYLFFFPSYAYLKTAYEAFTAA 630 Query: 487 TMTLPVLLQG----ETSKGQLLQQFVSAGNALL---VATSSFWEGVDVRGDTLSLVII-- 537 L V Q E + L F + ++ V F EG+D++G+ L V I Sbjct: 631 NPDLKVCAQENAMTEADRQTFLDHFQTGSEPIIGFAVLGGIFAEGIDLKGNRLIGVAIIS 690 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 LP + + L+A G F + Q GR+IR D GV+++ Sbjct: 691 VGLPGINAETDQLRA---YFDRANGQGFAYAYQLPGFNNVLQAGGRVIRGTKDVGVILLI 747 Query: 598 DNRLVMRPYGATFLASLPPAPRTRDIARAVR----FLAIP 633 D R + Y F A + + + + F Sbjct: 748 DERFITPRYARLFPDHWTHAQVSYNPTQLAQLLTHFWEAH 787 >UniRef50_Q7QEI1 Regulator of telomere elongation helicase 1 homolog n=1 Tax=Anopheles gambiae RepID=RTEL1_ANOGA Length = 988 Score = 325 bits (832), Expect = 5e-87, Method: Composition-based stats. Identities = 113/762 (14%), Positives = 223/762 (29%), Gaps = 162/762 (21%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA-------- 62 + P F+P E Q+ V + ++ V+E+ TGTGKT + L ++ Sbjct: 9 IPVNFP-FEPYELQKNYMAKVIECLQNKTNGVLESPTGTGKTLSLLCSSMAWLLHMKSKH 67 Query: 63 -------------------------------------KKKVIISTGSKALQDQLYSRDLP 85 K K+I ++ + + Q Sbjct: 68 RMETIDTLPEPPELSNAKHAALDPEQALALQQQKANAKMKIIYASRTHSQLSQAMQE--- 124 Query: 86 TVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDI 145 + +L R + +Q + S S+ N+ Sbjct: 125 -LKNTSYLFVRSIILGSRDQLCIHPDISKQENNAIKTVLCRESVKARNCSFYNRVET--- 180 Query: 146 STCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADM 205 A+D V + L + K C +++ ADV+ + ++ L Sbjct: 181 ------AKDRPDVATVPVMDIEDLVTVGRKLKACPYYLSKELVEQADVIFMPYNYLLDPK 234 Query: 206 VVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTE---- 261 K +G L + V+I DEAH + + + L S + +D + ++ Sbjct: 235 ARKSNG---LSLQNTVIILDEAHNVEKMCEEVGSALLRSSDIALAIEDTSSVIKSMMDGG 291 Query: 262 --------------LKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGN--------LRELL 299 L D L++ + ++ D + + G + + Sbjct: 292 GAWTGDGEKQLELTLDDLVLLKEILLGVEKAVDDIPILFSQGGTTHPGTYIFDLLEKANV 351 Query: 300 ANPQIQRAFLLLDDTLELCY-DVAKLSLGRSALLDAAFERAT------------LYRTRL 346 + I +++ + + + R A L + + Sbjct: 352 SFGNINVVLQVMNSLITHITTEKTGGFVRRGAGLQSMVDFLEVVFASSGPEYRQAVEKCF 411 Query: 347 KRLKEINQP-----GYSYWYE------------CTSRHFTLALTPLSVADKFKELMAQKP 389 + E +P G + S + + ++L+ Sbjct: 412 RVHIEPEEPKQLAKGGVKRADGWTATKQPLKAPVKSTSKVINFWCFNPGFGMRQLVDSGT 471 Query: 390 GSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQT------ 443 S I TS TL+ S L + A SL P Q + V+ + P Sbjct: 472 RSIILTSGTLAPLKPF---ISELSLPVAVSLENPHIIA-RSQVYVKVITHGPDRVELNSS 527 Query: 444 ----NQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTL--------- 490 + P L + G + S+ ++ +E+++A+ Sbjct: 528 FKNRSNPEYIASLGRTALSLCPIIPGGLLIFFPSYPLLNKCSEEWQASGIWGQISRLKQI 587 Query: 491 PVLLQGETSKGQLLQQFVSA------GNAL--LVATSSFWEGVDVRGDTLSLVIIDKLPF 542 V +G+ + ++ + A+ V EG+D V+I LPF Sbjct: 588 FVEPRGKDQFTTTMAEYYAQVRDPASRGAIFMAVCRGKVSEGLDFADANGRAVMITGLPF 647 Query: 543 TSPDDPLLKARMEDC-----RLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVIC 597 D + + + R ++ +A + Q +GR+IR DD G +++C Sbjct: 648 PPMMDARVVLKKQYLDTNRTRENELITGNDWYSLEASRAVNQAIGRVIRHKDDYGAILLC 707 Query: 598 DNRLVMRPYGATFLASLPPAPRTRD--------IARAVRFLA 631 D+R A A + R + RF Sbjct: 708 DSRFQNARQQAQLSAWIHSHLRESSAVPNFGTVVGEMSRFFR 749 >UniRef50_Q03DH3 Rad3-related DNA helicase n=2 Tax=Pediococcus RepID=Q03DH3_PEDPA Length = 783 Score = 324 bits (831), Expect = 5e-87, Method: Composition-based stats. Identities = 119/626 (19%), Positives = 230/626 (36%), Gaps = 46/626 (7%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P + R QR +AVAV + I Q L VEA TGTGKT + + P + KA Sbjct: 184 FPFPEYRNGQRDLAVAVYKTILTKQRLFVEAPTGTGKTVSTMFPTI------------KA 231 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 L +++ R +K ++ +N + L +++ I + + ++ Sbjct: 232 LGEEVIERIFYLTAKQSTQHVAEEAIELMAN----QGLRIKSITITAKDRIIFPEEVDMK 287 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVV 194 N + G ED+ + + + Y + ++ D++ Sbjct: 288 PEENPYMIGYYDRVKDGIEDA--LENEDKFDKAVIQTYAKKYMLDPFEFSLDLSLFCDLI 345 Query: 195 VVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI 254 + +++ D +V F + +++ + DEAH L + + + ++ + Sbjct: 346 IGDYNYLF-DPMVYLQRFFTIEDQSNFFLIDEAHNLVSRSRAMYSAVVEQALVIQAQELF 404 Query: 255 TIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDT 314 T D++Q+++ +L + + E +++A L ++ Sbjct: 405 EA--STTDVDSKQVKRRLTQLDNEFELIHQAFKNQTKDYMV-EYNPLDGLEKAMLNFNEV 461 Query: 315 LELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTP 374 + + S +LD F + ++ E Y + + + Sbjct: 462 VREWLPKQPDNDLTSTILDLFFAN-----NKYIKISEYFDESYRILIQNPEDNIKIEEQI 516 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALL 434 L + + +K IF SATLS + ++ LG + L + SPF+ +Q LL Sbjct: 517 LDPSPYLDASL-KKGRGAIFFSATLSPVE---YYQETLGSTEGLILQMASPFEEKQQNLL 572 Query: 435 CV-LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT-LPV 492 + + + + A + ++EA G + S+A + +A+ F+ + V Sbjct: 573 ITSYIDTRYAARQRNLPNIIASIATLVEAKTGNYLIFGPSYAYLNQIADAFQEMHPEIEV 632 Query: 493 LLQGE----TSKGQLLQQFVSAGNALLVA----TSSFWEGVDVRGDTLSLVIID--KLPF 542 LQ + L F + + LV F EG+D+ + L V I LP Sbjct: 633 QLQTSQMSMEERTAFLDAFRTEKSGTLVGFAVLGGLFSEGIDLINEQLIGVGIVSVGLPG 692 Query: 543 TSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 S + LLK E + G F+ + + Q GRLIR DRG +++ D R V Sbjct: 693 LSTERNLLK---EYFDEKNGHGFEYAYQLPGMNHVLQSAGRLIRTRRDRGNILLMDQRFV 749 Query: 603 MRPYGATFLASLPPAPRTRDIARAVR 628 Y F + ++ + Sbjct: 750 TSRYLNLFPGHWKNYQKVTSVSDLQK 775 >UniRef50_UPI0000DB6B80 PREDICTED: similar to CG4078-PA n=1 Tax=Apis mellifera RepID=UPI0000DB6B80 Length = 928 Score = 324 bits (830), Expect = 8e-87, Method: Composition-based stats. Identities = 120/751 (15%), Positives = 218/751 (29%), Gaps = 140/751 (18%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIIST 70 + P FKP Q + V Q ++ + V+E+ TGTGKT +L + T Sbjct: 9 IIINFP-FKPYSIQEEYMAKVIQCLQNSKNGVLESPTGTGKTL-----SLLCSSLSWLLT 62 Query: 71 GSKALQDQLYSRDL--PTVSKALKYTGNVALLKGRSN------YLCLERLEQQALAGGDL 122 LQ Q + P N L K + ++ + L Sbjct: 63 KKAQLQAQSLVNTIEEPNFGGHFFKQLNNGLKKSTGDSESITFNWNAPKIIYASRTHSQL 122 Query: 123 PVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQ---------------------AWPLV 161 + V G E S+ + + Sbjct: 123 SQAMQELKRTSYKHVGTAVLGSRDQLCIHPEVSKETNSSNKIYMCHSKVKSRTCFYYNNI 182 Query: 162 TSTND-----------NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKES 210 S D L +K C +R+ +AD++ + ++ L K Sbjct: 183 ESRKDDPFFKQEILDIEDLVKAGQKFKCCPYFLSRELKQNADIIFMPYNYILDAKSRKIQ 242 Query: 211 GFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQ--- 267 G + + ++++FDEAH + I + +SS + +IT+ KD +Q Sbjct: 243 G---IDIQNNIILFDEAHNIEKICEETASLQISSTDIAMCIDEITVVMEDMAKDIEQQNN 299 Query: 268 --------------------LQKCADRLAQSAQDFRLQLGEPGYRGN------------- 294 L+ L ++ + + G Sbjct: 300 FLMENSENVQKDFTADDLCILKAMFLELEKAIDAISIVKRDEGDTFPGGYIFELLGKAQL 359 Query: 295 --LRELLANPQIQRA-----------FLLLDDTLELCYDVAKLSLGRSALLDAAFERATL 341 RE L ++++ F + L+ D+ K + L + + Sbjct: 360 IHGREQLVIEKLEKIVFYLTTTSTSPFTRKGNALQKFSDLLKTAFSSDNSLFSKEKIKQY 419 Query: 342 YRTRLKRLKEINQPGYSYW----YECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSA 397 Y+ ++ + W + + S ++L Q + I TS Sbjct: 420 YKVYIQLEEHKKSKQNDVWDKKKILSKNEGKIINYWCFSPGFSMQQLKNQGARAIILTSG 479 Query: 398 TLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQ----------TNQPG 447 TLS S LGI L S Q + +L P N P Sbjct: 480 TLSPLKPF---ISELGIPIEVQLE-NSHIVKEDQICVGILSQGPDGYSLNSSFNTRNDPK 535 Query: 448 SARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTL------PVLLQGETSKG 501 R L + + S+ +M+ E+++ T V++ + Sbjct: 536 YIRSLGQTIFNFSCLVPYGLLVFFPSYPIMKKCKEEWQNTGLWTKIADRKVIIFNKDGFI 595 Query: 502 QLLQQFVS------AGNAL--LVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKAR 553 ++ ++ A+ V EG+D V+I LPF DP + + Sbjct: 596 NVMNEYYEKIKDPSCTGAIFMAVCRGKVSEGLDFANANGRAVLITGLPFPPLKDPRVILK 655 Query: 554 MEDCRLRGGD-----PFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGA 608 + +A + Q +GR+IR +D G +++CD R + Sbjct: 656 QRYLEEIKKQDKEALSGQQWYQLEASRAVNQAIGRIIRHKNDYGAIILCDYRFDNPSFKK 715 Query: 609 TFLASLPPAPRTRD-----IARAVRFLAIPS 634 A L P + + F Sbjct: 716 QLSAWLRPHIKNFTCFGIIVKELKGFFRYAE 746 >UniRef50_C5EU12 DEAD_2 domain-containing protein n=7 Tax=Firmicutes RepID=C5EU12_9FIRM Length = 809 Score = 322 bits (825), Expect = 3e-86, Method: Composition-based stats. Identities = 123/648 (18%), Positives = 228/648 (35%), Gaps = 68/648 (10%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR-----AKKKVIIS 69 P R+ Q+++AV V ++I + + L ++A TG GKT + + P+L+ +K+ Sbjct: 194 FPYP-YRDGQKELAVDVYRSIARKRNLFIQAPTGVGKTLSTIYPSLKAMGEGHGEKLFYL 252 Query: 70 TGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSD 129 T K + + + K N + + +E+ P Sbjct: 253 TA-KTITRSVAEDAFSILRKESGLYFNTVTITAKEKLCIMEK-----------PDCNPQA 300 Query: 130 VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAM 189 I + ++ D V + Y+ C + Sbjct: 301 CIRAKGHYDRVNDAVYE----------IIGDVDGITREKVLEYAKRYQICPFEFCLDISN 350 Query: 190 DADVVVVNHHLFLADMVVKESGFGELIP-EADVMIFDEAHQLPDIASQYFGQSLSSRQLL 248 D ++ +++ V + F + P + + + DEAH L A + + SL +L Sbjct: 351 WVDGIICDYNYVFDPNVRLKRYFDQGEPGQGYLFLVDEAHNLVPRAREMYSASLIKEDVL 410 Query: 249 DLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYR----GNLRELLANPQI 304 + + I + K QL +C + + + GE G+ ELL + + Sbjct: 411 -MVRRILKSQTGAGKVLTQLDRCNQKFLDIKRAYGSDSGEGVIHRQVLGSDYELLPDVNL 469 Query: 305 QRA-FLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYEC 363 + + LE + R +LD F R L ++ Y Sbjct: 470 LALQLMTMFGELESFMNENVEFGDRDLVLDFYF----AVRDFLYVYDRLDDNYRIYARLL 525 Query: 364 TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRL-GIEQAESLLL 422 HF + L ++ A KE + + S +F SATL + ++ L G ++ ++ Sbjct: 526 PDGHFMVRLLCMNPAVNLKECL-DRGNSTLFFSATLLP---IQYYKELLSGSQEEYAVYA 581 Query: 423 PSPFDYSRQALLC---VLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 SPF + +L V + + ++A + I+E G + C S+ + Sbjct: 582 KSPFPEENRLVLAASDVSSRYSRRSAYEY-EKIADYICRIVEGKRGNYMVFCPSYQYLYA 640 Query: 480 LAEQFRAT-----MTLPVLLQG----ETSKGQLLQQFVSAGN----ALLVATSSFWEGVD 526 + + L Q E + + L+ F AL V F EG+D Sbjct: 641 IEGILARRQEEGGLAFTWLAQKNRMTEEEREEFLRSFDGEREQSMAALCVMGGIFSEGID 700 Query: 527 VRGDTLSLVII--DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRL 584 ++ D L +I LP + + +LK + GG FD + + Q GR+ Sbjct: 701 LKEDRLIGAVIIGTGLPQVNTEQEILK---DYFDEHGGCGFDYAYQYPGMNKVMQAAGRV 757 Query: 585 IRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD--IARAVRFL 630 IR D+GV+ + D+R + A F + +AV Sbjct: 758 IRTIHDKGVIALLDDRFLRPECVALFPREWGSYTVVNRYNVGQAVEGF 805 >UniRef50_C0D1I1 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D1I1_9CLOT Length = 829 Score = 322 bits (825), Expect = 3e-86, Method: Composition-based stats. Identities = 120/655 (18%), Positives = 227/655 (34%), Gaps = 74/655 (11%) Query: 14 AIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKK----KVIIS 69 P + R+ Q+ +A AV ++I++G+ L ++A TG GKT + + P+L+A + Sbjct: 191 QFP-YAYRDGQKGLAAAVYRSIDQGRNLFIQAPTGVGKTLSTVFPSLKAMGEGSGDKLFY 249 Query: 70 TGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSD 129 +K++ + + + + Sbjct: 250 LTAKSITRSVAEDAFRVMRDLQQLYFTTVTI------------------------TAKEK 285 Query: 130 VILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTST---NDNCLGSDCPMYKDCFVVKARK 186 + +L ++ + + ++ + + C Sbjct: 286 LCVLDKPDCNPETCPVAKGHYDRVNDAVYDILHEEMGITRELVLEYAKRHNVCPFEFCLD 345 Query: 187 KAMDADVVVVNHHLFLADMVVKESGFGEL-IPEADVMIFDEAHQLPDIASQYFGQSLSSR 245 AD ++ +++ V + F E P + + DEAH L A + F L Sbjct: 346 ITNWADGIICDYNYVFDPNVRLKRYFAEGSTPGEYLFLVDEAHNLVPRAREMFSAGLLKE 405 Query: 246 QLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFR-LQLGEPGYRGNL---RELLAN 301 L L K I + +QL++C L + F + GE G R R+ Sbjct: 406 DFL-LVKRILKGKDGAERTVRQLERCNKELLNLKRAFAAEEGGEEGVRQRSVLGRDYQLL 464 Query: 302 PQIQRAFLLLDDTLELCYDVAKLSLG---RSALLDAAFERATLYRTRLKRLKEINQPGYS 358 + +L L L R +LD F+ R L ++ Sbjct: 465 EDVNLLYLELSGLFSELEAFMNEHLEFGDRDLVLDFYFQ----VRDFLYVHDRLDDNYRI 520 Query: 359 YWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE 418 Y + F + L ++ + +E + + S +F SATL + ++ L +Q+E Sbjct: 521 YSWLLEDGSFLVKLMCINPSVNLRECL-DQGRSTLFFSATLLP---IQYYKELLSGDQSE 576 Query: 419 S-LLLPSPFDYSRQALLCV--LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHA 475 + SPFD + ++ + ++ + ++A + I+ A G + C S+ Sbjct: 577 YAVYANSPFDSENRLIVAASDVSSIYRRRNRREYERVAGYIVEIVGARKGNYMVFCPSYQ 636 Query: 476 MMRDLAEQF-----RATMTLPVLLQG----ETSKGQLLQQFVSAGNA-----LLVATSSF 521 + + E F R + + Q E + + L +F G+ L V F Sbjct: 637 YLHAVEEVFVQLEERGELPFAWISQSSHMREEEREEFLARFARPGDGRSLAALCVMGGIF 696 Query: 522 WEGVDVRGDTLSL--VIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQ 579 EG+D++ + L VI LP + + +L+ E GG F + + Q Sbjct: 697 SEGIDLKEEQLIGAIVIGTGLPQVNVEQEILR---EYFDEHGGQGFSYAYQYPGMNKVMQ 753 Query: 580 GVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIAR---AVRFLA 631 GR+IR A D+GV+ + D+R + Y A F F Sbjct: 754 AAGRVIRTATDQGVIALLDDRFLKSDYQALFPREWERYTVVNRRNVRRAVADFWE 808 >UniRef50_A4S0W9 Predicted protein n=2 Tax=Ostreococcus RepID=A4S0W9_OSTLU Length = 1067 Score = 322 bits (824), Expect = 4e-86, Method: Composition-based stats. Identities = 120/750 (16%), Positives = 225/750 (30%), Gaps = 158/750 (21%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK----------- 63 P P + Q Q+ AV +A +G +VE+ TG+GKT A L AL Sbjct: 45 FP-LTPYKSQVQVMSAVVRAARRGTCALVESPTGSGKTLALLCAALAWSESESERREDVG 103 Query: 64 -------------------------KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVA 98 K+ +T + A Q+ Y + Sbjct: 104 VDDDEDGEEDEARKRETKRIGNGKPPKIYYATRTHAQIAQIVGELSR-----TAYKPHTV 158 Query: 99 LLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGD-ISTCVSVAEDSQA 157 +L R +Y C+ + ++ +++ G S S+A++ Sbjct: 159 VLASREHY-CVNKSARKGGDVNAECRRLMDAGAAGGDGKGCFYSGQGASKLASLAKNHPD 217 Query: 158 WPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIP 217 + + L K C ++ A A+++ ++ L ++ Sbjct: 218 -----ALDIEDLVKMGTSKKGCPYFASKIMAESAELIFCPYNYLLDPRTRSA---MDIDI 269 Query: 218 EADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQ 277 E ++IFDEAH + D A + + + + + ++ R + + + + Sbjct: 270 EGSLIIFDEAHNIEDTAREAASEEIILDDVANAIDRLSEMRRRATANVSECELVLRSMKG 329 Query: 278 SAQDFRLQLGEPGYRGNLRELLANP-----------QIQRAFLLLDDTLELCYDV----- 321 F E L++ + A L + LE+ + Sbjct: 330 VYDWFIGFCDEKSPSYGLKQAQEALSAMVRGEQILQTLAEAGLTEESVLEVMRALGVITK 389 Query: 322 --AKLSLGRSALLDAAFERATLYRTRLKRLKEINQ---PGYSYWYECTSRH--------- 367 + + + + F +K L + Y + T Sbjct: 390 YNQENKDPKERVAGSVFNTCEKVLNPIKFLLSRGEVTARDYKIVFTKTRESDRVVSTQRV 449 Query: 368 ------------FTLALTPLSVADKFKELMAQK--PGSWIFTSATLSVNDDLHHFTSRLG 413 + L+ A F+EL+++ S + TS TL+ + S LG Sbjct: 450 NSELNRLPVEELVKINFWALNPALAFRELVSENGGARSVVLTSGTLAPLNSF---ASELG 506 Query: 414 IEQAESLLLPSPFDYSRQAL----------LCVLRNLPQTNQPGSARQLAAMLRPIIEAN 463 + + P D RQ + + +L A LR + + Sbjct: 507 VPFPIRMEAPHCVDMDRQVWGGIVAAGPSNIALNAGYKSRGDTSFQDELGACLRDVAKVT 566 Query: 464 NGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSK------------------GQLLQ 505 M S++++ + ++R T L + Q K +L+ Sbjct: 567 PHGLLMFFPSYSLLETIVRRWRETGLLRAIEQASGKKIFQEPGKSCSYGKKPVTLETVLE 626 Query: 506 QF---------------------VSAGNALL--VATSSFWEGVDVRGDTLSLVIIDKLPF 542 ++ A+L V EG+D VI +P+ Sbjct: 627 KYYSAVATSVKAAKHPYAPAPANAKCRGAILFAVCRGKISEGIDFADANARAVICVGIPY 686 Query: 543 TSPDDPLLKARMEDCRL---RGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDN 599 + D L+ A+ RG + A L Q VGR +R D G +++ D+ Sbjct: 687 PNIKDALVAAKRSYNEEGAHRGLLSGSKWYDQQAFRALNQAVGRCLRHRHDHGAIMLVDS 746 Query: 600 RLVMRPYGATFLASLPPAPRTRDIARAVRF 629 R + +LP R A RF Sbjct: 747 RFNNSN-----IQALPKWLRPAMQKSASRF 771 >UniRef50_UPI000180C89E PREDICTED: similar to BRIP1 n=1 Tax=Ciona intestinalis RepID=UPI000180C89E Length = 1145 Score = 321 bits (823), Expect = 5e-86, Method: Composition-based stats. Identities = 119/741 (16%), Positives = 228/741 (30%), Gaps = 154/741 (20%) Query: 9 GQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKK--- 65 G + P FKP Q M + + +++ + ++E+ TG+GKT + L AL ++ Sbjct: 13 GGVKIHFP-FKPYPSQLSMMSMIVKGLQRSEHCLLESPTGSGKTLSLLCSALAWQQDLAM 71 Query: 66 ------------------------------------VIISTGSKALQDQLYSRDLPTVSK 89 + T + Q+ ++ Sbjct: 72 RLQKKEELYEQSNVDCAEEECCSIEQPPKEKEKVPTIWFGTRTHKQIAQITHE----LAT 127 Query: 90 ALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILS----DVILLRSWSNQTVDGDI 145 N+++L R + C+ L Q+ + ++ D+ Q V+ Sbjct: 128 TQYRHVNMSILSSREH-ACIHPLNSQSKTKNEGCKELRKGIHPDLPGTHCIFYQNVNRLR 186 Query: 146 STCVSVA-EDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLAD 204 S +QAW L L K C AR+ A ++ ++ + Sbjct: 187 SHASLKNCGITQAWDL------EDLVKLGTRVKSCPYYAARELQKTASIIFCPYNYLIDP 240 Query: 205 MVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKD--ITIAYRTEL 262 + ++ + D++I DEAH + D + + + L+ D I+ + + Sbjct: 241 SIRSS---MQIDLQNDIVILDEAHNIEDSSREAASFTAVETDLMSTVADLEHLISVESNV 297 Query: 263 KDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQI---QRAFLLLDDTLELCY 319 ++ Q+L ++ L E Y ++ + + DTL L Sbjct: 298 EEHQKLHLVLSKMGGWMNKHVKDLKESAYE-TWSKVWTGEDFIPHLDEWGITADTLSLLV 356 Query: 320 DVAKLSLGR---------------------SALLDAAFERATLYRTRLKRLKEINQ---- 354 + ++ + L A F+ T K+ + Sbjct: 357 EAFLKAVETKEEEEGGVEEEKKEMIMHSMSKSFLGALFDVLTYILASSKKFAGDYRVTMI 416 Query: 355 --------------PGYSYWYECTSRHF--TLALTPLSVADKFKELMAQKPGSWIFTSAT 398 G+ + S+ F L L+ A F +L I TS T Sbjct: 417 RTAQFGIPPPKRTRDGWVTINKRKSKFFLLKLHFWCLNPAVAFTDL--ADTRCIILTSGT 474 Query: 399 LSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLR------------NLPQTNQP 446 LS S LG+ L + + V TN Sbjct: 475 LSPMSSFS---SELGLAFPIQLEAAHVI---SNSQVFVGSLGCGPNGHRLQATYQNTNSL 528 Query: 447 GSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQ 506 +L +++ + +S+ M+ L E+++ T + Q + + + Sbjct: 529 DFQDELGKLVQSVCNVVPYGVLCFFSSYKMLEKLCERWKNTGLWYDICQKKEIVCEPHGR 588 Query: 507 FVSAGNALL----------------------VATSSFWEGVDVRGDTLSLVIIDKLPFTS 544 + + +L V EG+D + VI +PF + Sbjct: 589 NKADFDGVLQNFYHTVAMVGTSDLTGALFLAVCRGKASEGLDFANNNARAVITVGIPFPN 648 Query: 545 PDDPLLKARMED----CRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR 600 D ++ + C+ RG ++ A L Q +GR IR +D G L+I D+R Sbjct: 649 YRDKQVELKKTYNNFHCQDRGLLTGNDWYEIQAFRALNQALGRCIRHRNDWGALIIVDDR 708 Query: 601 LVMRPYGATFLASLPPAPRTR 621 P + L R + Sbjct: 709 FCQNP--RKYCKGLSKWVRQK 727 >UniRef50_A8SGA1 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SGA1_9FIRM Length = 829 Score = 320 bits (821), Expect = 7e-86, Method: Composition-based stats. Identities = 120/663 (18%), Positives = 202/663 (30%), Gaps = 83/663 (12%) Query: 12 AKAIPGFKPREPQRQMAVAVTQAIEKGQPL--------VVEAGTGTGKTYAYLAPALR-- 61 A P K R QR +A V +A G+ +A TG GKT + L PAL+ Sbjct: 183 ALQFPFAKYRPGQRALAGEVYRACRAGKSADRKGGTRVFCQAPTGIGKTMSALFPALKAM 242 Query: 62 ---AKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALA 118 K+ T Q + L + CL Sbjct: 243 GEGCGAKLFYLTARNTTQAAAEDAVARLRTAQPGLALRSVTLTAKEK-ACLH-------P 294 Query: 119 GGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKD 178 + L +V ++N D ++ + S ++ L + Sbjct: 295 DAEGHPACLPEVC---PFANGYYDRRKDALAALLDGSGSFSRAA------LADTARQFSV 345 Query: 179 CFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYF 238 C + DVV+ +++ +V + F + + DEAH LPD A + Sbjct: 346 CPFELGLDLSEWCDVVIGDYNYLFDPVVHLKRFFDAAGDW--LFLIDEAHNLPDRARAMY 403 Query: 239 GQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRL----------------------- 275 + L + + + + + K Sbjct: 404 SAQFAKSSLTEAKRALGKGKSSLKTALTKADKVFLAARKACAQAAPRTGAEPAGETEPAQ 463 Query: 276 -----AQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSA 330 A++A DF L G + + A + L+ + + Sbjct: 464 VSLLPAEAAPDFALPQPLYARDGTVFLQQLPAALPAALRAVHTPLQDWLEQNPEDPAHAQ 523 Query: 331 LLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPG 390 LL+ F + R + + L L L A +A Sbjct: 524 LLELYFA-----LQDIARAADRYDSHFVTQLTARGSELELHLLCLDPAPFVDASLAA-GR 577 Query: 391 SWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLR-NLPQTNQPGSA 449 SATL+ + S LG A ++ LPSPF L C+ + + S Sbjct: 578 CAALFSATLTPP---AFYRSVLGCADARAVALPSPFPPENLGLFCLPGISTRYRQREASV 634 Query: 450 RQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT-LPVLLQ----GETSKGQLL 504 +A L + G S+A ++ + E F A +P L+Q + + + L Sbjct: 635 PAVADALAALARGKTGNYLAFFPSYAYLQQVYEAFAARWPDIPTLVQQRSLDDAGRAEFL 694 Query: 505 QQF----VSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLR 560 QF V F EGVD+ GD L I + +P + + Sbjct: 695 AQFVPRLAKTLLGFAVMGGIFGEGVDLVGDRLIGCAIVGVGLPQV-NPRQEMLRRYYEEQ 753 Query: 561 GGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRT 620 G FD + + Q GR++R D+GV+++ D+R F P Sbjct: 754 SGCGFDYAYRYPGMNKVLQAAGRVVRTPQDKGVVLLLDDRFAQPDTARLFP---PHWQHI 810 Query: 621 RDI 623 + + Sbjct: 811 QYL 813 >UniRef50_B9XAU8 DEAD_2 domain protein n=3 Tax=Bacteria RepID=B9XAU8_9BACT Length = 824 Score = 320 bits (821), Expect = 8e-86, Method: Composition-based stats. Identities = 124/673 (18%), Positives = 234/673 (34%), Gaps = 93/673 (13%) Query: 12 AKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR----AKKKVI 67 A A P R QR++AVA + + +G L +EA TG GKT + + PA++ K + I Sbjct: 191 ALAFPFSNYRTGQREIAVAAYKIMARGGRLFIEAPTGIGKTISVIFPAIKAMAERKLERI 250 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 ++ + + + + V L R LC+ D L Sbjct: 251 FYLTARTIGRAVAEKAFADLRGK-GLQLRVVTLTAREK-LCIR----------DGKACEL 298 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 S L + + ++ + + V ++ C + Sbjct: 299 STCPLAQGYYDRYKPAMREALGRQEINRRVLEEVAQR-----------HQVCPFELSLDI 347 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 + D ++ +++ V F + + ++ DEAH L D A + F +++R+L Sbjct: 348 SSWVDGIICDYNYVFDPKVYLRRHFADEAGDFAFLV-DEAHNLVDRAREMFSADINTREL 406 Query: 248 LDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNL------------ 295 +++ + I K +L +L + +L Sbjct: 407 VEVKQAIKREVPGCAKAITRLNVGIKKLIGKVGAEAESSADFPDEMDLFSAGAVTKTKNI 466 Query: 296 ------------RELLANPQIQRAFLLL-DDTLELCYDVAKLSLG---RSALLDAAFERA 339 ++ + + +L +D LE + R LL F Sbjct: 467 PSATTRTLPQARGDMGIFKEFPSSLTMLVEDVLETAETWLTRNEAAEFRDDLLQLYFRLL 526 Query: 340 TLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATL 399 + +R E+ Y E + + L L + ++ + + + +F SATL Sbjct: 527 S-----FRRTAELYDERYVTLVEA-AESVRVRLFCLDPSFLLQQAL-SRGKAAVFFSATL 579 Query: 400 SVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQALLCVLR-NLPQTNQPGSARQLAAMLR 457 + ++++ LG + L L SPFD ALL R + + ++ + Sbjct: 580 TP---INYYRELLGGNQEDPVLQLNSPFDSEHLALLVHGRIRTDFKARRQTLSEVVHAIA 636 Query: 458 PIIEANNGRCFMLCTSHAMMRDLAEQFRATMT-LPVLLQG----ETSKGQLLQQFVSAGN 512 +++ +G + S + + E F++ +PVL Q E+ + L F Sbjct: 637 TLVQERSGNYLVYFPSFLYLNAVLELFQSLYPTVPVLTQRPGMAESERETFLAAFSVEHG 696 Query: 513 ALLVA----TSSFWEGVDVRGDTLSLVII--DKLPFTSPDDPLLKARMEDCRLRGGDPFD 566 LV F EG+D+ GD L +I LP + L++ + + + G FD Sbjct: 697 QTLVGFAVLGGIFGEGIDLVGDRLIGAVIIGVGLPQLCAERDLIR---DYFQEKTGAGFD 753 Query: 567 EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDI--- 623 + + Q GR+IR DRG++++ D+R Y F P + I Sbjct: 754 YAYTFPGMNRVLQATGRVIRSETDRGIVLLIDSRFDEWRYRKLF----PKWWHRKQIGNE 809 Query: 624 ----ARAVRFLAI 632 F Sbjct: 810 HQLREAVQDFWRS 822 >UniRef50_B7FQG3 Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum CCAP 1055/1 RepID=B7FQG3_PHATR Length = 791 Score = 320 bits (820), Expect = 1e-85, Method: Composition-based stats. Identities = 109/750 (14%), Positives = 224/750 (29%), Gaps = 146/750 (19%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKV---- 66 + P F+P + Q V A+ + + ++E+ TGTGKT L L +++ Sbjct: 44 VRVHFP-FRPYKCQETYMEKVLDALLRSENALLESPTGTGKTLCLLCSTLAWQREQSRLL 102 Query: 67 ------------------------------IISTGSKALQDQLYSRDLPTVSKALKYTGN 96 I ++ + + Q+ + +Y Sbjct: 103 QQASELQNTDASLLANSQDAPARAARVPTIIYASRTHSQLSQVVREL-----RNTRYRPQ 157 Query: 97 VALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQ 156 A+L R ++++Q + D+ + +DG + + + Sbjct: 158 HAVLGSRDQMCVNPKVKKQGCSATDVNHDCSKLGKDRKCRFRNNLDGFTAPANENSGTNT 217 Query: 157 AWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELI 216 + L + +K C R A++++V ++ D + + ++ Sbjct: 218 Q----PVMDMEDLVTMGKSHKVCPFYYTRALVAKAELILVPYNYLF-DKDARATTLSDIP 272 Query: 217 PEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRT-----------ELKDT 265 + V+IFDEAH L AS+ LS+ + ++ A + ++ Sbjct: 273 WDNAVLIFDEAHNLESFASESASFDLSNTDISGCIAEVQKAGNYLQAMPDLGSNLKEENL 332 Query: 266 QQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLS 325 +L+ +L Q G + + L D+ Sbjct: 333 VKLKAIFLKLEDYLMGLGNQTAYTGEFMMDFFQQGGGVNHSNHEIFIEELRKVNDLLLDM 392 Query: 326 LGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSR-----------------HF 368 G A + + + LKR+ + R Sbjct: 393 RGTGATKGS--PKLEHFVQCLKRVFGEKLESRCLAKSASYRVHVSPKEQRQSGKQHIASR 450 Query: 369 TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDY 428 T++ + A +EL + S I TS TLS LG+ +L P Sbjct: 451 TVSYWCFAPALAMEELASLNVRSIIVTSGTLSPLPSYSM---ELGLNFPHTLENPH-IVS 506 Query: 429 SRQALLCVL----------RNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 Q + V+ + + +L L + + + S+++M Sbjct: 507 DNQIHVRVIGKGVSGKELTSSYERRKDGEYYSELGNTLVALSKVTPAGMLVFFPSYSVME 566 Query: 479 DLAEQF-----------------RATMTLPVLLQGETSKG--QLLQQFVSA------GNA 513 E++ R T V+++ ++S + + F Sbjct: 567 TCIERWGGPSLNYNIKSPKTPWKRLLSTKSVVVEPKSSANLPEAIADFHRFLGMLKSPGC 626 Query: 514 LL--VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDC---------RLRGG 562 +L V EG+D + V+I LPF D +K + + + Sbjct: 627 ILMGVCRGKISEGIDFANEQSRAVVITGLPFPPSFDAKVKLKRDFLDGARAIGSMKASNV 686 Query: 563 DPFDE----------------VQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPY 606 F + A + Q +GR+IR+ D G +++ D+R + Sbjct: 687 GGFADNASSTSNLATKLSGHDWYAQQAHRAVNQAIGRVIRNRSDYGAVLLLDSRFSQQRN 746 Query: 607 GATFLASLPPAPRTRD-----IARAVRFLA 631 + P + + + +F Sbjct: 747 QEGLSKWVRPHLKKDEGFGTAVGALAKFYR 776 >UniRef50_Q8SSE9 ATP-DEPENDENT DNA-BINDING HELICASE (RAD3/XPD subfamily) n=1 Tax=Encephalitozoon cuniculi RepID=Q8SSE9_ENCCU Length = 678 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 116/690 (16%), Positives = 234/690 (33%), Gaps = 103/690 (14%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKK------------ 65 F+P Q + + +VE+ TGTGK+ + + L + Sbjct: 15 FEPYPAQIVTMTKLISCLMTRTSGLVESPTGTGKSLSIICAVLGYNEHLKRSIRGIGAKR 74 Query: 66 -----------------VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLC 108 +II + + DQL + + +Y +++L R+ Y Sbjct: 75 REGGGPKGEEAREEKLKIIICSRTHKQLDQLVDQL-----RKTQYRPRISILASRAQYCI 129 Query: 109 LERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNC 168 +L A L++S S G V + + C Sbjct: 130 SPKLSDVADKNTGCS-------ELVKSGSCAYFTGKDRLAKKVGDKIFDIEELKGEGRRC 182 Query: 169 LGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAH 228 +G C +R DA+V+ ++ + + + +G + E V+I DEAH Sbjct: 183 VG--------CPYYASRILNEDAEVIFAPYNYLIDSRIRESTG---ISLENSVVIVDEAH 231 Query: 229 QLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELK------DTQQLQKCADRLAQSAQDF 282 + D+ LSSR + + +I A + D L +L + A+ Sbjct: 232 NIEDVCRSSGSIELSSRIMEIIQNEILGAVKRSGALGEIRMDFVNLMDFFRKLREGAEST 291 Query: 283 RL-QLGEPGYRGNLRE-LLANPQIQRAFLLLDDTLELCYDV--AKLSLGRSALLD-AAFE 337 G + +R+ +++R + + L++ + + S LL+ + F Sbjct: 292 DEFDRVTAGGKLRIRKGREIKEELERMGIGKEFVLKIKNSIYAIQKSEDAKDLLNVSTFH 351 Query: 338 RATLYRTRLKRLKEINQPGYSYWYECTSRH---------FTLALTPLSVADKFKELMAQK 388 + L + + YS+ + + F+ L F+ + K Sbjct: 352 VLEGLDSVLSAIHFSDCDAYSFVFHKMNDENVKNSRSCRFSYNFWLLDGGYTFRSFV-GK 410 Query: 389 PGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQ------ 442 S + S TL+ F+S LG E A +++ P +Q + +R Sbjct: 411 VRSVVLLSGTLTP---FSSFSSELGHEFAHTIVAPHLI-TQKQVFVSCVRKGHLLKELIG 466 Query: 443 ----TNQPGSARQLAAMLRPIIEANN--GRCFMLCTSHAMMRDLAEQFRATMTLPVLLQG 496 ++ P QL ++ + G + S++ + +L ++ + ++ Sbjct: 467 TYGVSDTPQYLDQLCRVIVDVSCKIKDHGGTLVFVPSYSFLENLQKRMGGVSSGLLVEPK 526 Query: 497 ETSKGQLLQQFVSAGNAL---------LVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDD 547 + + + N + V EG+D + VI +P+ S D Sbjct: 527 SGAGNEFEKVMRRYKNRIATKQSAVFMCVYRGKASEGIDFKDSFARAVIAVGIPYPSLHD 586 Query: 548 PLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYG 607 P ++ + E A + Q +GR IR DD G++++ D+R + Sbjct: 587 PQVELKKEFNDKYKSFNGRLWYEAQAFRAVNQALGRAIRHKDDWGIVMLLDSRYSEKRVQ 646 Query: 608 ATFLASLPPAPRTRD-----IARAVRFLAI 632 + + +T D ++ VRFL++ Sbjct: 647 SQLSKWVAENIKTYDSYDGCVSELVRFLSL 676 >UniRef50_B6YWR5 ERCC2/XPD/Rad3-related DNA repair helicase n=5 Tax=Thermococcus RepID=B6YWR5_THEON Length = 666 Score = 318 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 121/669 (18%), Positives = 243/669 (36%), Gaps = 77/669 (11%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLA----PALRAKKK 65 +++ P R QR+ V +A++ G+ ++EA TG GKT + LA A+ K Sbjct: 25 PMSEYFPYESLRPHQREFIELVNEAVKNGENAIIEAPTGFGKTVSVLAGILPYAIEMGYK 84 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ 125 V+ + D++ K + L+ R + LCL Q + Sbjct: 85 VLYLARTHRQMDRVIEELKAINRKT---PISGVELRSRKD-LCLHSYLTQFTTDAYNAMV 140 Query: 126 ILSDVILLRSWS----NQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFV 181 + ++ L + + + + P+ + + C Sbjct: 141 VCKNLKKLGKCPFYENEKKKKTEFDELIKFFLQEPSHPM-------EILDYAQTLELCPY 193 Query: 182 VKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEAD--VMIFDEAHQLPDIASQYFG 239 R+ A A+V+V ++ L+ ++E+ L + +++FDEAH LPD A Sbjct: 194 DLTRRIAEKANVIVASYLYLLS-PTIRENFLSSLDIDYSDLIVVFDEAHNLPDQAISALS 252 Query: 240 QSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELL 299 LS + K+ D + + A+ L+ + + E ++ E+ Sbjct: 253 DRLSIHTVNRAIKE---------ADEYREHEIANFLSIFGKGLEMLYEEKLRERDVHEVP 303 Query: 300 ANPQI-------------QRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRL 346 P++ + L++ + + + + + + + R + Sbjct: 304 IQPELVFAHVVDILNLDGRYLVKTLNEMVAVGDSIREDKIEKGKPPRSYIGRVGEFLLFW 363 Query: 347 KRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLH 406 L + Y + + +L L L + + S IF S TL+ L Sbjct: 364 LSLI--GREDYLFLMSRD-KGLSLELVALDPSKALS--FVKNVQSAIFMSGTLTP---LE 415 Query: 407 HFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSAR---QLAAMLRPIIEAN 463 F +GIE A+ P A + V +++ + S ++ + ++ Sbjct: 416 AFRDVMGIENAKLKKFP-RMVKRENAQVLVAKDVSTRGEERSMEVYKRMVDYIVEAVKLI 474 Query: 464 NGRCFMLCTSHAMMRDLAE-----QFRATMT-LPVLLQGETSKGQ--LLQQFVSA---GN 512 + S+ +++ L + T + + QG TS+ L+ +F + Sbjct: 475 PKNVGVFTASYEVLQGLLSANLEVRLEGTGKAIFIEKQGATSQENDLLVAKFKAHARGKG 534 Query: 513 ALLVA--TSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLR--GGDPFDEV 568 A+L+ EG D GD ++ VI+ +P+ P P ++A++ + G + Sbjct: 535 AVLLGVMGGRNSEGQDYSGDEMNGVILVGIPYARPT-PRVQAQIRYFERKFPGKGRYYGY 593 Query: 569 QLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIAR--- 625 LP A L Q GR+ R A+++G +++ D RL+ + + R D+ R Sbjct: 594 YLP-AHRKLVQAAGRVHRSAEEKGSIIVLDYRLLWKGIKKDLPDWMRETMRPVDLGRMRL 652 Query: 626 -AVRFLAIP 633 RF P Sbjct: 653 YLRRFWQQP 661 >UniRef50_UPI000180BD56 PREDICTED: similar to predicted protein n=1 Tax=Ciona intestinalis RepID=UPI000180BD56 Length = 1008 Score = 317 bits (813), Expect = 8e-85, Method: Composition-based stats. Identities = 113/758 (14%), Positives = 219/758 (28%), Gaps = 153/758 (20%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKK----- 65 + P F E Q+ V QA+ Q +E+ TGTGKT L L +++ Sbjct: 9 IKVEFP-FTAYEVQKSYMTKVIQALNTHQNAALESPTGTGKTLCLLCSTLAWRRQHLNEL 67 Query: 66 ----------------------------VIISTGSKALQDQLYSRDLPTVSKALKYTGNV 97 +I ++ + + Q+ + Sbjct: 68 KKHTNPVSQEDAWSSSEKSKDSAIPAPKIIYASRTHSQISQVVKE---LKRTDYGKDITI 124 Query: 98 ALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQA 157 ++L R + +Q + + + N D + + Sbjct: 125 SILGSREQMCIHPEVSKQTSNQAMVHMCRGKINKHTCQFYNNVEDAKKNNIFTTK----- 179 Query: 158 WPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMD--ADVVVVNHHLFLADMVVKESGFGEL 215 + L + C R+ + ++ ++ L K L Sbjct: 180 -----VMDIEELVTVGKSRTVCPYYSEREVSKQNECGIIFTPYNYLLD---RKSRATNNL 231 Query: 216 IPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELK------------ 263 +++IFDEAH L + + L+S ++ +++ K Sbjct: 232 EIRGNIVIFDEAHNLEKLCEESTSFDLTSLEVAKCIEEVGDVLDAATKFEESGTVADGHE 291 Query: 264 -------------DTQQLQKCADRLAQSAQDF--------RLQLGEPGYRGNLRELLANP 302 D ++ L + R + G+ + + L Sbjct: 292 NGESLSLSEFKSQDLAIMKSVFIALEKLLDQVELNKDTKSRSEPGKFMFEFLSKINLTES 351 Query: 303 QIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRL-----------KRLKE 351 Q ++D ++ R A L E + + + +R++E Sbjct: 352 TYQIMLDVVDKISTYLSTLSNSLRIRGAALQKFSEIVKVAFSWMEDETKGHMTRAQRMQE 411 Query: 352 INQPGYSYWYEC-----------------TSRHFTLALTPLSVADKFKELMAQKPGSWIF 394 + + E + T++ S L+ + I Sbjct: 412 LCMCYRVHICENAETGKSTDVWKRSANTSSKPGRTISFWCFSPGYAMTNLVKCGVRNLIL 471 Query: 395 TSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRN----------LPQTN 444 TS TLS + TS L I+ +L D Q + L + Sbjct: 472 TSGTLSPLESF---TSELQIDFPITLENDHVID-KHQVFVITLTHGKKGGLLNSTFKTRK 527 Query: 445 QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETS----- 499 ++L + +I A G + S++ M + ++ + L++ Sbjct: 528 DVNQVQELGLTVADMIAAAPGGALVFFPSYSAMAEYLTIWKENSNVMTLVEKVKPCTVEP 587 Query: 500 --KGQL---LQQFVSAGNA-----LLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPL 549 K +L + ++ + N L V EG+D D VII +P+ DP Sbjct: 588 KNKHELRTAIDKYYTDVNTGGGTFLAVCRGKVSEGLDFSDDNGRTVIIVGIPYPPAFDPR 647 Query: 550 LKARMEDCRLRGGDP------FDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVM 603 +K +M E A + Q +GR+IR D G +V+CD+R Sbjct: 648 IKMKMAFLDDLRTKGATSLLTGREWYRQQACRAVNQAIGRVIRHRYDYGAIVLCDHRYAG 707 Query: 604 RPYGATFLASLPPAPR-----TRDIARAVRFLAIPSSR 636 R + + P + I R F + + Sbjct: 708 RDQLSELPKWVQPHVVKFNNAAKCIRRLRSFFCSVNEK 745 >UniRef50_Q57ZK3 Helicase, putative n=2 Tax=Trypanosoma brucei RepID=Q57ZK3_9TRYP Length = 963 Score = 316 bits (810), Expect = 2e-84, Method: Composition-based stats. Identities = 131/765 (17%), Positives = 222/765 (29%), Gaps = 163/765 (21%) Query: 1 MTDDFAPDGQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL 60 M+ F + + P F P Q + +V A++ ++E+ TGTGKT L L Sbjct: 1 MSSVFIDG--VEVSFP-FAPYPVQEEYMRSVIYALKGSHNALLESPTGTGKTLCLLCGVL 57 Query: 61 RAKKKV------------------IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKG 102 + + + + A Q+ ++A+L Sbjct: 58 AWLDERRICFLNSGISDRTSLLRVVYCSRTHAQLSQVIRE---FKRTRYSSIFSMAVLGS 114 Query: 103 RSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDS---QAWP 159 R + ++ Q + + + + D Sbjct: 115 RDHMCLNSQVLQLPSSHAQRKLCSQLREDRNCRFYRGYEA--RAAGRKDFPDELWIHDME 172 Query: 160 LVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEA 219 + S C C R A DADVV + ++ D+ ++ EL Sbjct: 173 DLVSEGRKC--------GFCPYYYERDAAKDADVVFLPYNYVF-DVSFRKQLPFEL--SG 221 Query: 220 DVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSA 279 V+I DEAH LP + +L L + + + A + ++ D A ++ Sbjct: 222 SVLIVDEAHNLPSVLGSASCMNLQPLDLANAICECSRAMAMQRILSKDEDNNDDTSAVTS 281 Query: 280 QDFRLQLG------EPGYRGNLRELLANPQIQRAFLLLD--------------------- 312 + L E REL + + + LD Sbjct: 282 EQEFASLKVILCGLEACIVNEPRELPSKEEAETHAGRLDTSGSLTGCEIVRSGSYMISFL 341 Query: 313 ---------------------DTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKE 351 + + V S L + + R Sbjct: 342 RKAAITHDIFFGDGGEGGFINEVISKALTVLSQSESTGVGLSKVQQFLSFVFER----CG 397 Query: 352 INQPGYSYWYECTSRH-------FTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDD 404 SY+ ++ TL+ L ++ + L+ S + TS TLS Sbjct: 398 EGDDDSSYFILTDGKNTNGHANPRTLSYWCLDISRVVQSLVCD-LHSLLLTSGTLSP--- 453 Query: 405 LHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLP----------QTNQPGSARQLAA 454 L HF LG+ L +Q + VL P N L Sbjct: 454 LSHFAMELGVSFEVCLKGSHVI-EEKQVIGSVLCRGPGGERLNGGYAFRNGVDYRIGLGM 512 Query: 455 MLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT---------------LPVLLQGET- 498 L I G + S+ + + +R PV ++ Sbjct: 513 ALVNISRITPGGILVFFPSYVALNAAVDLWRTGGGRANETETVWAMLEQVKPVFVEPAAA 572 Query: 499 -SKGQLLQQFVSAGNA--------LLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPL 549 ++ F +A L V EG+D V+I +PF + D Sbjct: 573 ADAQTIVTSFQREVDANSTRGAFLLAVCRGRISEGIDFADQHGRCVVIAGIPFANHTDLF 632 Query: 550 LKARMEDCRLR-------GGDPF--DEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR 600 ++ + E GG PF +E + +A+ ++ Q VGR+IR DD G +V+ D R Sbjct: 633 VRLKREYITRVSTKRPAVGGKPFTGNEWYMNEAMRSVNQCVGRVIRHKDDYGAVVLADER 692 Query: 601 LVMRPYGATFLASLPPAP--RTRDIAR-------AVRFLAIPSSR 636 V R L L R + +F A R Sbjct: 693 FVDR------LHGLSEWVGSRCTVHSEFRGTYACIAKFFAPYRRR 731 >UniRef50_C4V9F4 Putative uncharacterized protein n=1 Tax=Nosema ceranae BRL01 RepID=C4V9F4_NOSCE Length = 695 Score = 315 bits (807), Expect = 3e-84, Method: Composition-based stats. Identities = 112/715 (15%), Positives = 230/715 (32%), Gaps = 117/715 (16%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKV---- 66 ++ P ++P E Q+Q + + +G ++E+ TGTGK+ + L L K+ + Sbjct: 9 ISVDFP-YEPYESQKQTMEKILTCMMEGSTGMIESPTGTGKSLSILCAVLAYKEHIKRNN 67 Query: 67 ------------------------------------------IISTGSKALQDQLYSRDL 84 I + + DQL + Sbjct: 68 IPLHKPPKKPLLDAVDESKQSDINELLNATQEKAENDNDFKIFICSRTHKQLDQLVQQL- 126 Query: 85 PTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGD 144 +Y +++L R+ Y +L+ ++ V+G Sbjct: 127 ----NKTRYKPRISILASRNQYCIHPKLQNVTDKASACS-------EYIKKNQCNYVNGK 175 Query: 145 ISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLAD 204 V ++ + C G C ARK A DAD++ ++ L Sbjct: 176 DRLAKRVGQNIFDIEEIVREGKRCGG--------CPYFAARKLADDADIIFAPYNYLLD- 226 Query: 205 MVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTEL-- 262 G + ++I DEAH + D+ L+S + + ++ A + Sbjct: 227 --RNVRGNTAIELSNSIIIIDEAHNIDDVCRSSGSIELTSNIIDIIVNELLNAVKKSAYL 284 Query: 263 ----KDTQQLQKCADRLA---QSAQDFRLQLGEPGYRGNLRELLANPQIQRAF--LLLDD 313 D L + +L + F R + + N I+ + Sbjct: 285 GETKGDYLILLELFRKLVFNVEKVTSFDKTNKNVKLRIRKGKNIKNELIEMTITCEFMTQ 344 Query: 314 TLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHF----- 368 Y + ++ G+S + + + + L L + YSY + F Sbjct: 345 FKNAIYGIEQVQDGKSLVSVSTWHIIETLDSILSPLLFSDCDVYSYAFNKCENDFQGRTF 404 Query: 369 -TLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFD 427 + + A F + ++ + I S TL+ F+S LG + A + P + Sbjct: 405 FSYNFWLMDGAYVFSPFV-KQVKALILLSGTLTP---FVSFSSELGHKFAHQISAPHLIN 460 Query: 428 YSRQALLCVLRN---------LPQTNQPGSARQLAAMLRPIIEANNG--RCFMLCTSHAM 476 + + C+ R Q+A ++ +G + S+ Sbjct: 461 DKQVLVTCLKRGHLKQELIGTYKIAESLAYLDQIARVVYDTAYKVHGHGGTLVFVPSYTF 520 Query: 477 MRDLAEQFRATMTLPVLLQGETS----KGQLLQQFVSAGNA----LLVA--TSSFWEGVD 526 + +L + + + + + +L+++ + N +L+ EG+D Sbjct: 521 LDNLHARIKLLRLDNLFCEPKAGGINEFESILKKYHNRINEKKPVVLLCVYRGKASEGID 580 Query: 527 VRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIR 586 + + VI +P+ S DP ++ + E A+ + Q VGR IR Sbjct: 581 FKDSSARAVICVGIPYPSLVDPQIELKKEFNDKHKHFNGRRWYETQALRAVNQAVGRAIR 640 Query: 587 DADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD-----IARAVRFLAIPSSR 636 DD G++++ D+R + + + + I FL+ S + Sbjct: 641 HKDDWGIIIMLDSRYSDKRVSVQLSGWVSQFLKVHNDYESCIKSINLFLSDKSKQ 695 >UniRef50_A4VLC1 Rad3-related DNA helicase n=91 Tax=cellular organisms RepID=A4VLC1_PSEU5 Length = 808 Score = 315 bits (806), Expect = 4e-84, Method: Composition-based stats. Identities = 124/626 (19%), Positives = 209/626 (33%), Gaps = 72/626 (11%) Query: 12 AKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALR----AKKKVI 67 A P + R QRQ+A AV +A G L+ +A TG GKT L P L+ + + Sbjct: 224 ALRFPHDEFRTGQRQLAEAVYKAACTGTTLMAQAPTGIGKTLGTLFPQLKAFPGQRLDKL 283 Query: 68 ISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQIL 127 +K +L L T+ + + V L R ++ D Sbjct: 284 FFLAAKTSGRRLALDALQTLQRNANHGLRVLELVAR----------EKTCEHPDKA---- 329 Query: 128 SDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKK 187 S G + + L+ L ++ C +++ Sbjct: 330 -----CHGESCPLARGFYDRLPAARAAALGQALLDQAA---LREVALAHQVCPYYLSQEL 381 Query: 188 AMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQL 247 A ADVVV +++ + D G ++ DEAH L D A + L R Sbjct: 382 ARWADVVVGDYNYYF-DSSALLHGLTLNNDWRISVLVDEAHNLLDRARGMYSAELDQRAF 440 Query: 248 LDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRA 307 LA + L Q+ +R L + P++ Sbjct: 441 AGLASQAPAPLKWPLGRVQRCWNEL------------------HREQLADYQVQPELP-- 480 Query: 308 FLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYE----- 362 LL + + + A LDA +RA R+ E+ + Sbjct: 481 LKLLGALQQAVSAITDYLGEQPAGLDAKLQRAYFDAMHFCRVAELFGEHSLFDISLLPAT 540 Query: 363 --CTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAES- 419 +R L L + A +A + S + SATLS LG+ + Sbjct: 541 ARSKARRSILCLRNVVPAPFLAPRLA-QARSSVLCSATLSPRR---FHADMLGLPAGSAW 596 Query: 420 LLLPSPFDYSRQALLCVLRNLPQTN--QPGSARQLAAMLRPIIEANNGRCFMLCTSHAMM 477 + + SPF SRQ +C+ ++ + S + ++ G +S + Sbjct: 597 IDVESPFQ-SRQLRVCLAEHVSTRYQHRQASLGAVVELIARQYRERPGNYLAFFSSFDYL 655 Query: 478 RDLAEQFRATMT-LPVLLQG----ETSKGQLLQQFVSAGNAL--LVATSSFWEGVDVRGD 530 + +A R +P Q E ++ L +F + V +F EG+D+ G Sbjct: 656 QQVAALLREQCPDVPFWEQTRGMQEAARNAFLDRFTEHSEGIGFAVLGGAFAEGIDLPGQ 715 Query: 531 TLSLVIID--KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDA 588 L + LP +P + K R+++ RG +D L + + Q GR+IR Sbjct: 716 RLIGAFVATLGLPQVNPVNEQFKIRLDELFGRG-HGYDYTYLYPGLQKVVQAAGRVIRTQ 774 Query: 589 DDRGVLVICDNRLVMRPYGATFLASL 614 D GV+ + D+R Sbjct: 775 QDEGVVHLIDDRFGRPQVRRLLPGWW 800 >UniRef50_Q03PE1 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03PE1_LACBA Length = 788 Score = 314 bits (805), Expect = 5e-84, Method: Composition-based stats. Identities = 114/625 (18%), Positives = 213/625 (34%), Gaps = 49/625 (7%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P R QR++AVAV + I + L EA TGTGKT + L P + KA Sbjct: 185 FPFDHYRPGQRELAVAVYKTIVTSKRLFAEAPTGTGKTISTLFPTI------------KA 232 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 + + L R +K + ++ + L+ +++ + L Sbjct: 233 IGEGLIQRIFYLTAKQSTRRVAEEAITLMAS----QGLKLKSITLTAKDKIKFPEEADLA 288 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVV 194 N + G D + + ++ DV+ Sbjct: 289 PEDNPYMLGYYDRLKPALLD--LLEHHDQLTRPVIEQVARKHTLDPFEFQLDASLFCDVI 346 Query: 195 VVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI 254 + +++ D V F + + DEAH L + + ++SS L L Sbjct: 347 IGDYNYLF-DPQVHLQRFFATRDPDNFFLIDEAHNLVSRSRDMYSAAMSSHPLDHLI--- 402 Query: 255 TIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDT 314 R + T +L++ L + D L + G + + + L + Sbjct: 403 -TLSRDTDQATPKLRRRLQDLRATFDDICAPLIDAGQTDS-TFMTPPENFEHDLGRLVEA 460 Query: 315 LELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTP 374 + + A+LD F +R+ + Y TL Sbjct: 461 VHDWLVDQPQTPFTQAILDYYF-----MAISYQRIADYYDDTYRMRLTIDDGQITLKQLC 515 Query: 375 LSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIE-QAESLLLPSPFDYSRQAL 433 L + + +A + SATLS L ++ + LG + + + L SPF + QA+ Sbjct: 516 LDPSAFLADSLA-LGHGAVLFSATLSP---LDYYQTVLGGDQDSLAYQLRSPFKPTNQAI 571 Query: 434 LCV-LRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT-LP 491 L + + + ++ +++ G + S++ + +++ F+ + Sbjct: 572 LVTNYIQTTYNKRDANLANILLAIKTLVDGKTGNYLIFLPSYSYLLTVSQAFQLAYPQIQ 631 Query: 492 VLLQG----ETSKGQLLQQFVSAGNALLVA----TSSFWEGVDVRGDTLSLVIID--KLP 541 + Q E + + L F + LV F EG+D++ D L V I LP Sbjct: 632 TVCQQAQMAEADRSRFLASFTANPTTTLVGFALLGGIFSEGIDLKADRLIGVCIVSVGLP 691 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 +P+ LL+ + R F + + Q GRLIR + D GV+++ D R Sbjct: 692 GINPETNLLR---DYFDERSHQGFAFAYQLPGLNNVFQAAGRLIRGSHDVGVILLMDQRF 748 Query: 602 VMRPYGATFLASLPPAPRTRDIARA 626 Y + + R + Sbjct: 749 ASPRYTQLYPSHWQHFQRLYRPEQL 773 >UniRef50_D1VTJ3 DEAD family protein n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VTJ3_9FIRM Length = 765 Score = 313 bits (801), Expect = 2e-83, Method: Composition-based stats. Identities = 119/621 (19%), Positives = 226/621 (36%), Gaps = 72/621 (11%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P R QR+MAVAV I K L V+A TG GK+ + + P++ KA Sbjct: 187 FPFKNYRVGQREMAVAVYNTISKTNKLFVQAPTGIGKSMSVIFPSI------------KA 234 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 + + + VS++ L +L + L L + + + Sbjct: 235 IGEDKLDKIFYLVSRSTGKITAQ---------DSLFKLMDRGLRIKYLTLTAKEKICIND 285 Query: 135 SWSNQTVDGDISTCVSVAEDS---QAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDA 191 D + + + V + + ++ C A + Sbjct: 286 EVKCNPKDCPFAKGHFDRVNDAIIDIFDSVDEFKRSNIEKYSRLHLVCPFEFQLDLANFS 345 Query: 192 DVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLA 251 D ++ +++ D +V F E E+ V + DEAH L D A + + + L+ L Sbjct: 346 DFIIGDYNYAF-DPIVYLKRFFEGSLESYVFLIDEAHNLVDRAREMYSAEFNLNDLMLLD 404 Query: 252 KDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLL 311 + + + + + + + LA++ A + A L Sbjct: 405 EYLPKSLKINRANNLKAISEFNLLAKT---------------RFFSYQAFENLNEALEKL 449 Query: 312 DDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYECTSRHFTLA 371 +L K +L+ F + ++ + + E T+ Sbjct: 450 MYSLNDYLIKYKEDEHYDEILNIYFNLFS-----YNKIYQYYNKDFVSVKEEN----TIK 500 Query: 372 LTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESL-LLPSPFDYSR 430 + L D FK+ + + + +F SATL + L ++ + LG ++ + SPFD ++ Sbjct: 501 ILCLDSGDIFKDFL-KNARASVFFSATL---EPLKYYGNLLGADENTYYYKIKSPFDTNK 556 Query: 431 QALLCVLRNLP-QTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMT 489 +L + L + + +L + G S+A M + E+++ + Sbjct: 557 LLVLRDKKILTTYRYRKNFVADIVRLL-KLFTEKKGNYIFFFPSYAYMEMVYEEYK-KID 614 Query: 490 LPVLLQG----ETSKGQLLQQFV--SAGNALLVATSSFWEGVDVRGDTLSLVII--DKLP 541 V++Q ET + + L +F A V +F EG+D+ G L V I +P Sbjct: 615 EKVIIQSRQMTETDRSEFLLKFKFQEDLRAFAVMGGAFSEGIDLLGKRLIGVAIISVGIP 674 Query: 542 FTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRL 601 S + +LK + + +D + ++ + Q GR+IR DD+GV+++ D R Sbjct: 675 QISFERNILK---NHFQKKLKKGYDYAYIYPGMVKVNQSGGRVIRSEDDKGVVLLIDKRF 731 Query: 602 VMRPYGATFLASLPPAPRTRD 622 + PY LP D Sbjct: 732 SIEPYSKL----LPSHWIVED 748 >UniRef50_P50831 Probable ATP-dependent helicase ypvA n=105 Tax=Bacillales RepID=YPVA_BACSU Length = 641 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 140/599 (23%), Positives = 244/599 (40%), Gaps = 34/599 (5%) Query: 16 PGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA----KKKVIISTG 71 GF R+ Q MA + +A ++ + + EAG GTGKT YL A+ K II+ Sbjct: 35 KGFDLRDEQVFMAFQLERAFKEKKVMFAEAGVGTGKTLVYLLFAISYARYVGKPAIIACA 94 Query: 72 SKALQDQLYSR--DLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP-----V 124 + L +QL + D+ +++ L + L K YLCL++LE+ D Sbjct: 95 DETLIEQLVKKEGDISKLAEHLDLKIDTRLSKSHEQYLCLKKLEKTMQRSDDDKWLDLYE 154 Query: 125 QILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDN-CLGSDCPMYKDCFVVK 183 + S V ++ GD +++ + W V+ + CL C M C + Sbjct: 155 SLPSFVHESQAMQRFYPYGDRKQYANLSNEE--WSDVSYDSFQDCL--TCDMRHRCGLTL 210 Query: 184 ARKKAMDA-DVVVVNHHLFLADMV----VKESGFGELIPEADVMIFDEAHQLPDIASQYF 238 +R + D+++ +H ++ + K G L+P+ ++FDE H L A + Sbjct: 211 SRDYYRKSTDLIICSHDFYMEHVWTEESRKREGQLPLLPDHSAVVFDEGHLLEFAAQKAL 270 Query: 239 GQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLREL 298 + L + + E + +L + A + + + E+ Sbjct: 271 TYRVKQSTLELFLERLLQNDIRE--EFAELIEDALLANDEFFYVLSEESKEVAGSHRLEI 328 Query: 299 LANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYS 358 + ++++A L L+ + + Y ++ + Q Sbjct: 329 KNDHRVKKAADELCRLLDKIGEALVFESEMYTIDQYELSVVEEYVEQMAYSLSLYQKDAI 388 Query: 359 YWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE 418 W E T + P +VA+ E + K +IF+SATLS + LGI Sbjct: 389 SWLEKKEAESTFVVMPRTVAEVLGEKVFSKKIPYIFSSATLSEGGSFDYIADSLGIHDYL 448 Query: 419 SLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMR 478 SL + SP+DY Q + + + +A + I+ GR +L S + Sbjct: 449 SLTVDSPYDYDEQMSINLYAKTDMDAEQKTAETI-----ETIKRYKGRTLVLFPSFEELN 503 Query: 479 DLAEQFRA-TMTLPVLLQGETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVII 537 + E A + P+ +G+ L+++F +L + WEG+D+ GD L V I Sbjct: 504 EFKELSAAWELPYPIFFEGDEEISSLVEKFQEEEETVL-CSVHLWEGLDIPGDALKNVTI 562 Query: 538 DKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVI 596 LPF P DP+ A+ + DPF+EV LP ++ ++QG+GRLIR D G + I Sbjct: 563 WSLPFP-PHDPVFTAKRNGAK---KDPFEEVDLPYMLLRVRQGIGRLIRSNQDSGSIHI 617 >UniRef50_Q4FXD6 Helicase, putative n=5 Tax=Trypanosomatidae RepID=Q4FXD6_LEIMA Length = 953 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 137/740 (18%), Positives = 236/740 (31%), Gaps = 138/740 (18%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPAL---------- 60 + + P F P Q + +V + ++ G ++E+ TGTGKT L L Sbjct: 10 ITVSFP-FDPYPAQVEFMRSVVKCLQNGFNGLLESPTGTGKTLCLLCSTLGWLSATSQGA 68 Query: 61 --------------RAKKKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNY 106 + KV+ + + A Q+ + +A+L R + Sbjct: 69 VLRHASDQDQKGRGKHNHKVVYCSRTHAQLTQVVRE---LKRTSYAQRFTMAVLGSREH- 124 Query: 107 LCLERLEQQALAGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTND 166 +CL + E L + S + L R+ S S A + P + +D Sbjct: 125 MCLNK-EVTRLPSSQAQHAMCSALRLERNCR------FFSGLQSAAAGASLLPPECAVHD 177 Query: 167 -NCLGSDCPMYKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFD 225 L + C R A DADVV++ ++ L + K+ F ++I D Sbjct: 178 MEDLMREGSRSGFCPYFHERDAAKDADVVLMPYNYVLDPSLHKQLPFE---LANCILIVD 234 Query: 226 EAHQLPDIASQYFGQSLSSRQLLDLAKDITIAY--------RTELKDTQQLQKCADRLAQ 277 EAH LP + S Q+LS ++ D + A + EL + ++ + + Sbjct: 235 EAHNLPSVLSSSGCQTLSPLEVTTAIHDCSRAIAMHRITTKKAELDEDMAAEEELELASL 294 Query: 278 SAQDFRLQL---GEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDA 334 RL++ EP G + R + LE ++ +S + + Sbjct: 295 KILLRRLEMCVYAEPMAEGTATPTPTQCDVVRDGSYMFAFLEKALITREVFGVQSDGVTS 354 Query: 335 AFERATLYRTRLKRLKEINQP--GYSYWYECTSRHFTLALTPLSVADK------------ 380 A A + L + +P + E +R F + L Sbjct: 355 ASGLAGTMGKCVTLLADSERPATSMARVQEFLTRVFAFDMAHLDSTRFVLQQHLVAAKAA 414 Query: 381 ------------FKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDY 428 + S + TS TLS D LG+E L Sbjct: 415 RTLGFWELDNTRLMRQVVSPLHSVLLTSGTLSPLDQFAA---ELGMEFQVRLKGKHVIQA 471 Query: 429 SRQALLCVLRN---------LPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRD 479 + + R + L L I G + S+A M Sbjct: 472 DQVLGGVLCRGPSGEKLNGGFSFRSSVDYRVGLGMSLANIARNTPGGTLVFFPSYASMNS 531 Query: 480 LAEQFRATMT---------------LPVLLQGETSKG--QLLQQFVSA------GNALL- 515 + E +RA P+ ++ S ++Q F A+L Sbjct: 532 VVELWRAGSGRAGDTKTVWGMLSELKPIFVEPNNSNDLPTIVQGFQKEVDTSPLRGAILL 591 Query: 516 -VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLR-------GGDPF-- 565 V EG+D + V++ +P+ + D ++ + + G PF Sbjct: 592 AVCRGKISEGIDFADNHGRCVLVAGIPYANHTDLFVRLKRDYITSVAPQRPLVHGKPFTG 651 Query: 566 DEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDI-- 623 D+ +A+ + Q VGR+IR DD GV+++ D R L S+ R R Sbjct: 652 DDWYRNEAMRAVNQCVGRVIRHKDDYGVVLLADERF------EGLLESVSEWVRRRTRVF 705 Query: 624 -------ARAVRFLAIPSSR 636 A +F R Sbjct: 706 SDFRGAYAAVAQFFGARRHR 725 >UniRef50_A2E1B9 Helicase, putative n=1 Tax=Trichomonas vaginalis RepID=A2E1B9_TRIVA Length = 747 Score = 311 bits (797), Expect = 5e-83, Method: Composition-based stats. Identities = 105/652 (16%), Positives = 212/652 (32%), Gaps = 70/652 (10%) Query: 10 QLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKV--- 66 +++ P +KP Q V ++ + G ++E+ TGTGKT + L L +++ Sbjct: 7 EVSIHFP-YKPYPLQETYMSKVIESCDTGNYAILESPTGTGKTLSLLCSVLSWRQQRNTS 65 Query: 67 ---IISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLP 123 I S+ + + + K K+ +++ R+ YLCL Q+ L Sbjct: 66 SRIIYSSRTHSQLSNVIKEL-----KRTKFQPTTSIIASRT-YLCLHDNIQKM--ESSLQ 117 Query: 124 VQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVK 183 + ++ I +S + S D C C Sbjct: 118 SRFCRELRQKNQCIYDNES-KIEQVSKKVINSLL--DIDSFVD-----ICRNEAVCPFFV 169 Query: 184 ARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLS 243 ++ AD ++ + + S ++ V+IFDEAH P+ +YF S+ Sbjct: 170 SQFNVKTADFILSPYTYIADPISR--SSLPSVVFNKSVVIFDEAHNFPEQCCEYFSMSVP 227 Query: 244 SRQLLDLAKDITIAYRTELKDTQQL--------QKCADRLAQSAQDFRLQLGEPGYRGNL 295 + L ++ + + ++ ++ + + R ++ + N Sbjct: 228 FNKFCVLRSFLSRQQSNVIGEVVTFGITSVELAKEFSNLVCDKLELLRKEIHQNFVLKNA 287 Query: 296 RELLAN-PQIQRAFLLLDDTLELCYDVAK------LSLGRSALLDAAFERATLYRTRLKR 348 + L + + + + L LS LD + KR Sbjct: 288 KFLFDFFSKCKIDYRTIRPFKRLLKAFLDNPVLYCLSQNEQESLDLILQFFDFLYHENKR 347 Query: 349 LKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHF 408 + + Y+ + + F E++ +P + I TS TL+ + + Sbjct: 348 NESLIDNFYTISLSTD---HCFNIYCFTPEKAFSEIVNLQPRTIILTSGTLAPLETFASY 404 Query: 409 TSRLGIEQAESLLLPSPFDYSRQALLCVLRN---------LPQTNQPGSARQLAAMLRPI 459 G + L P + ++C N +L + L + Sbjct: 405 F---GYKFPIILENPHIAKPEQLLVICCGEGPFGNRLSFTYANRNDNQQKVELKSALSKL 461 Query: 460 IEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGE--TSKGQLLQQFVSA----GNA 513 + + S + + + + + ++ ++ QF A Sbjct: 462 FSLSPNGSLVFFPSFSSLSEF-DVHSIDTKKKIFIEPRTFGDFSSIVSQFKENAVKEEGA 520 Query: 514 LL--VATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLP 571 L V EG+D D V + +PF + DP + R + + + + Sbjct: 521 ALFAVCRGKMSEGIDFSDDYARSVFVVGIPFPNTKDPKVILRKQFYESKKKGSGMKWYID 580 Query: 572 DAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDI 623 A+ + Q +GR IR DD V+V+ DNR + LP + I Sbjct: 581 SAMRVVNQSIGRAIRHKDDWSVVVLIDNRYDG------MIELLPKWVKPSVI 626 >UniRef50_D1ISD7 Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D1ISD7_VITVI Length = 777 Score = 311 bits (797), Expect = 5e-83, Method: Composition-based stats. Identities = 112/773 (14%), Positives = 216/773 (27%), Gaps = 170/773 (21%) Query: 11 LAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAK------- 63 + P F+ + Q V Q++++ ++E+ TGTGKT L L + Sbjct: 9 IDVDFP-FEAYDCQLVYMEKVIQSLQERCNALLESPTGTGKTLCLLCATLAWRKNVPHSQ 67 Query: 64 ------KKVIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQAL 117 +I ++ + + Q+ K Y + +L R LC+ E+ +L Sbjct: 68 SAKTNLPTIIYASRTHSQLRQVIQEL-----KRTSYRPKMVVLGSREQ-LCIH--EEVSL 119 Query: 118 AGGDLPVQILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTST--NDNCLGSDCPM 175 G + +T G V++ + P + + L + Sbjct: 120 LRGRAQTNACHSLCR-----KRTKKGYCGHYSRVSDFMKYNPGLGDDPIDIEDLVNIGRS 174 Query: 176 YKDCFVVKARKKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIAS 235 C +R+ D++ ++ + + ++IFDEAH L + + Sbjct: 175 NGPCPYYVSRELHKVVDILFAPYNYLID---RGNRKSLSVCWNNSILIFDEAHNLEGLCA 231 Query: 236 QYFGQ--------------------SLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRL 275 S+S R++ + +L Sbjct: 232 DAASFDLPSWLLTACISEAKNCVDLSISRREIEKANDKSCNPDNFAILRGNHSAALLLKL 291 Query: 276 AQSAQDFRLQLGEPGYRGN---LRELLANPQI------------QRAFLLLDD------- 313 + + ++ E G+ + ELLA+ I + A LLL++ Sbjct: 292 EKQIAEVPIESKELGFTRPGPYIYELLADLNITHKTATMLIDIIEEAALLLEEDAKGVAQ 351 Query: 314 -------TLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPG---------- 356 LE D+ K+ A F R + + + Sbjct: 352 KTKSTICRLETMSDILKIIFRDGGNAHAKFYRVHVQEVEANAADALKEAAGTKFRTGAIR 411 Query: 357 -------------YSYWYECTSRHF---------------TLALTPLSVADKFKELMAQK 388 + + R TL+ + +E Sbjct: 412 EGSCGKVAVAVAQMVFKVDIRLRSAHKKTKANPNIGKASRTLSWWCFNPGIAMQEFAVLG 471 Query: 389 PGSWIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVL---------RN 439 S I TS TLS + L +E L P ++ V + Sbjct: 472 VSSIILTSGTLSPLESF---AQELKLEFPVRLENPHVISSNQIWAGVVPAGPSGCSFNSS 528 Query: 440 LPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT------------ 487 + ++L + + S+ ++ ++ Sbjct: 529 YRTRDSLEYKQELGNAIVNFARIVPDGLLVFFPSYYILEQCVGCWKNKSHANSTNSSTIW 588 Query: 488 -----MTLPVLLQGETSK-----GQLLQQFVSAGNA----LLVATSSFWEGVDVRGDTLS 533 PV+ ++S + + + + V EG+D Sbjct: 589 ERICKHKQPVIEPRQSSLFPSSIEDYMNKLKDSSMSGAVFFAVCRGKVSEGLDFADHAGR 648 Query: 534 LVIIDKLPFTSPDDPLLKARMEDCRLRGGD--------PFDEVQLPDAVITLKQGVGRLI 585 V+I +PF DP ++ + E RG +E A + Q VGR+I Sbjct: 649 AVVITGIPFAMRTDPKVRLKREFLDQRGLSQKEGCKVLTGEEWYTQQASRAVNQAVGRVI 708 Query: 586 RDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRD-----IARAVRFLAIP 633 R D G ++ CD R + + P + + RF Sbjct: 709 RHCHDFGAIIFCDERFAHPNRQSQISLWIQPHIKCYSKFGDVVFTLTRFFRDA 761 >UniRef50_B5IHH7 DEAD_2 domain protein n=2 Tax=Aciduliprofundum boonei T469 RepID=B5IHH7_9EURY Length = 619 Score = 310 bits (795), Expect = 9e-83, Method: Composition-based stats. Identities = 123/634 (19%), Positives = 229/634 (36%), Gaps = 41/634 (6%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPA----LRAKKKVIIST 70 P +K R+ Q+ + + + +E +V EA TG+GKT A L PA ++ KKVI Sbjct: 3 FP-YKYRKGQKDIVKDIEEVLENRMHMVFEAPTGSGKTIATLYPAVKYAIKNDKKVIYLV 61 Query: 71 GSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDV 130 + + + Q+ A K L+GR+N L R + G + +L + Sbjct: 62 HTNSQERQVIKE-------AKKLEIRAIALQGRANLCPLARERNELQHGSPDELALLCNK 114 Query: 131 ILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMD 190 + + + + K C + D Sbjct: 115 LKKDVKEGNENACIYYANYLKNGNDIRKIIEENPTAEEFFEKAMNLKICAYEAIKDALPD 174 Query: 191 ADVVVVNHHLFLADMVVKESGFGELIPEADVM-IFDEAHQLPDIASQYFGQSLSSRQLLD 249 A V+V + F + + +P D++ I DEAH +PD A + LS L + Sbjct: 175 ATVIVFPYIYFFFPFIRRGIMDKIGVPMGDIILIVDEAHNIPDFARELKSMELSVNSLEN 234 Query: 250 LAKD------ITIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQ 303 + K+ + + + L++ ++ + +D + + + +L Sbjct: 235 MEKEALDYGNPQVLGHSIADIAEFLKEAIYKMQKFVEDEEGIIPHYAFEEEVSNVLGIS- 293 Query: 304 IQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPGYSYWYEC 363 I L D + V + + L + + L +E Y + Sbjct: 294 INDFDTLAKDLIYYGEMVRENKVKHRKLPRSY---MYHTGSFLYFWREAYSYEYIRLIKW 350 Query: 364 TSRHFTLALTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGIEQAE-SLLL 422 + +L + L A L+ S I S TL N+ + + + + + Sbjct: 351 -GKTLSLEVYCLDPATVTDALL--NVHSSIHLSGTLVPNE----YKNIVALPDNTITKRY 403 Query: 423 PSPFDYSRQALLCVLRNLPQTNQ-PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLA 481 PSPF +L V + + + ++A L II + S++++ + Sbjct: 404 PSPFPKENLKILYVDDVTTKYGEVDENLPRIAEHLTKIIS-IGKNTAIFFPSYSLLSKIK 462 Query: 482 EQFRATMTLPVLLQGETSKGQLLQQFVSAGNALL-VATSSFWEGVDVRGDTLSLVIIDKL 540 E + + S Q+++ F G ++L V +EG+D G L +V+I + Sbjct: 463 ELLDSKILSEERGMKTYSLFQMIENFKEKGGSILSVIGGRIFEGLDFPGKLLEIVVIVGI 522 Query: 541 PFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNR 600 P+ P P +KA + G+ ++ A+I ++Q +GRLIR +DRG+ +I D R Sbjct: 523 PYPKPT-PKVKALQRYYDSKFGNGWEYAFRMPALIKMRQAIGRLIRSEEDRGIAIILDKR 581 Query: 601 LVMRPYGATFLASLPPAPRTRDIARAVRFLAIPS 634 F LP + F Sbjct: 582 AAS------FKGDLPLEKAENLVKEIREFFQGNE 609 >UniRef50_Q1WV23 Superfamily II DNA and RNA helicase n=3 Tax=Lactobacillus RepID=Q1WV23_LACS1 Length = 788 Score = 310 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 120/638 (18%), Positives = 225/638 (35%), Gaps = 54/638 (8%) Query: 15 IPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKA 74 P R+ Q + A AV + I + L+VEA TGTGKT + + PA++ + G+K Sbjct: 185 FPFSSYRKNQHEFAAAVYKTIALNKKLLVEAPTGTGKTISTIFPAVK-------ALGTKK 237 Query: 75 LQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLR 134 Q Y + K + T + + G L A+ + + L Sbjct: 238 CQKIFYLTAKQSTRKVAEETLQLLVKHG---------LSITAITLTSKEQITFPEELDLA 288 Query: 135 SWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKARKKAMDADVV 194 N G D V + + + + + DVV Sbjct: 289 DDENPYYLGYYDRLRPALIDILTNEKV--ITRKIVENYAKKHMLDPFEFSLDISNSCDVV 346 Query: 195 VVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDI 254 + +++ +V + F E + ++ DEAH L + + + +SS+Q+ DL + Sbjct: 347 ICDYNYLFDPLVKLQRFFTERNYDYTFLL-DEAHNLVSRSRDMYTKEISSQQIKDLLDKL 405 Query: 255 TIAYRTELKDTQQLQKCADRLAQSAQDFRLQLGEPGYRGNLRELLANPQIQRAFLLLDDT 314 QK D+L DF L + EP +++ I+ L Sbjct: 406 QTLPHPP-------QKIVDKLNTLLNDFDL-IKEPLVNYQQADVI----IEEKLASLTKK 453 Query: 315 LELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKEINQPG---YSYWYECTSRHFTLA 371 + D L + + + +K + ++ + + + Sbjct: 454 IMYFCDFTTDWLAENPHFSLKDDLLEFFFAAYAFVKISDYYNNSFRTHLFITENSELLIR 513 Query: 372 LTPLSVADKFKELMAQKPGSWIFTSATLSVNDDLHHFTSRLGI-EQAESLLLPSPFDYSR 430 + L ++ + GS + SATLS L+++ G+ + + L SPFD S Sbjct: 514 VFCLDFSELIANSL-NLGGSAVLFSATLSP---LNYYQEMFGLIDNSLLYQLSSPFDESN 569 Query: 431 QALL---CVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRAT 487 LL + + + S ++ + +I G + S+ ++ + F Sbjct: 570 LNLLITSYIP--VTYQQRQQSLGKIIDAIHTMIATKQGNYLIFLPSYTFLKQVVVAFNQA 627 Query: 488 MTL--PVLLQGETSKGQ---LLQQFVSAGNALLVA----TSSFWEGVDVRGDTLSLVIID 538 V+ + + ++ Q L FV +LV SF EG+D++G+ LS V I Sbjct: 628 YPHIDTVIQENDMTREQQEDFLNYFVENPTKILVGFAVLGGSFSEGIDLKGNRLSGVAIV 687 Query: 539 KLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICD 598 + + + + D F + + Q GR+IR + D GV+++ D Sbjct: 688 SVGLPKLSKETNELQ-SYFNNKQKDGFQYAYQLPGLNNIFQAAGRVIRSSTDVGVVLLID 746 Query: 599 NRLVMRPYGATFLASLPPAPRTRDIARAVRFLAIPSSR 636 NR Y F A + + L+ ++ Sbjct: 747 NRFATSRYAKFFPPHWKYAQIIHNQYELEQNLSTFWNK 784 >UniRef50_B7AB83 ATP-dependent DNA helicase, RecQ family n=3 Tax=cellular organisms RepID=B7AB83_THEAQ Length = 1684 Score = 309 bits (791), Expect = 3e-82, Method: Composition-based stats. Identities = 156/684 (22%), Positives = 248/684 (36%), Gaps = 80/684 (11%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKV--IISTGSKAL 75 R Q +M V +A+ +G+ L +EA TGTGKT YL PALR K I+T +K L Sbjct: 247 PTRRPAQEEMLRLVDEALREGKRLFLEAPTGTGKTKGYLYPALRLGKDQRVWIATHTKVL 306 Query: 76 QDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQILSDVILLRS 135 Q QL Y + AL+K + LC E L + L + L + + Sbjct: 307 QAQLLEELKGLAR--AGYAVSAALVKSSRDTLCPEALLELFLDARKSEDEELRAAVGVLI 364 Query: 136 WSNQTVDGDISTCVSVAEDSQAWPL----VTSTNDNCLGSDCPMYKDCFVVKARKKAMDA 191 + D+ + S+ + V + C CP ++ C K A Sbjct: 365 HYAALGESDLEALPAYWHFSRGFREAREHVGTNPRRC-RPVCPFFQTCAYQKLLAHRKGA 423 Query: 192 DVVVVNHHLFLADMVVKESGFGEL-------IPEADVMIFDEAHQLPDIASQYFGQSLSS 244 ++V N LA + +E P ++ DEAH L D+A++ L+ Sbjct: 424 QILVTNQAYLLAHFLREEPLDAPEEEEAEPKTPPDPHLVVDEAHHLEDVATEALTWVLNH 483 Query: 245 RQLLDLAKD--ITIAYRTELKDTQQLQKC---------------ADRLAQSAQDFRLQL- 286 +L L+D+++L++ RL + + + ++ Sbjct: 484 EELTHKLNRLAHPSKESGLLRDSRRLKELSSGARERAKEVREELLHRLRERLEGYTKRMV 543 Query: 287 --------------GEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALL 332 G + + L P + R L + L + K L Sbjct: 544 ALVSQLGTGDPQYGLTLGLSPHWKRLEDWPYLDREERGLMEDLRELREALKTIAEDPRTL 603 Query: 333 DA--AFERATLYRTRLKRLKEINQPGY-----------SYWYECTSRHFTLALTPLSVAD 379 A R L L E + + + ++ + P+ VA Sbjct: 604 MARDLAPIGEYLRGALDLLHERRRVLFGKEALNSNLLHVTKLDPVTKSWMHLAQPVEVAS 663 Query: 380 KFKELMAQKPGSWIFTSATLSVNDD-----LHHFTSRLGIEQAESLLLPSPFDYSRQALL 434 K + + S + TSATLSV + LGIE AE LP Y + A L Sbjct: 664 DLKAGLWPRFQSVVLTSATLSVPTEKDPEGFALLKKVLGIEGAEGQRLPPSLPYEK-AHL 722 Query: 435 CVLRNLPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLP 491 V R+LP+ + P R L L ++ R L TS + + L Sbjct: 723 IVPRHLPEARESTLPRFQRMLHQELHTLLGHTR-RSLTLFTSLKRLEAAKKALEGHPHL- 780 Query: 492 VLLQGETSKGQLLQQFVSAGNA--LLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPL 549 + + + + + + + S+ EGVD L+LV ++++PF P PL Sbjct: 781 LAPLTRREREDVAGRIKANPQEPVAALGSRSYMEGVDFP--ALNLVNLERIPFELP-SPL 837 Query: 550 LKARMEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADD---RGVLVICDNRLVMRPY 606 L RM+ +G DP+ + LP + + Q GRLIRD + G V+ D +L+ PY Sbjct: 838 LSRRMDWVYEQGLDPWWDYYLPKSALAFAQAFGRLIRDQREGVGDGAFVLWDKKLLNAPY 897 Query: 607 GATFLASLPPAPRTRDIARAVRFL 630 F LPP F Sbjct: 898 QEVFYRVLPPGVHRHFPLTRKEFY 921 Score = 42.0 bits (97), Expect = 0.077, Method: Composition-based stats. Identities = 69/365 (18%), Positives = 117/365 (32%), Gaps = 32/365 (8%) Query: 233 IASQYFGQSLSSRQLLDLAKDITIAYRTEL-------KDTQQLQKCADRLAQSAQDFRLQ 285 IA++ FG +L + + I A + + L L Q + Sbjct: 965 IATEIFGLTLQEDRWNKQLEAIRAALEGKDLVVLLPTGYGKSLAFQIPALMQEGLTLVIS 1024 Query: 286 LGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTR 345 + + LL A L E + ++ GR LL + ER + Sbjct: 1025 PLVALMKDQVDRLLELGLPAGAVHSLMRPAEQRSVLDEVRAGRVRLLYVSPERLNRSESL 1084 Query: 346 LKRLKEINQPGYSYWYECTSRH----FTLALTPLSVADKFKELMAQKPGSWIFTSATLSV 401 K L+E Q G H + P + L F +ATLS Sbjct: 1085 WKLLQEKWQEGGLERVVFDEAHCLVEWGFDFRP-DYLRALERLKGLAGVPRSFFTATLSP 1143 Query: 402 NDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIE 461 DLH ++ P F Y V + ++ + LR E Sbjct: 1144 -KDLHKLRETADLDAEPIR--PPTF-YRPNLRFVVSKVRGDLSKLKVLSRALMWLRE--E 1197 Query: 462 ANNGRCFMLCTSHAMMRDLA---EQFRATMTLPVLLQGETS--KGQLLQQFVSAGNALLV 516 A + T+ A LA + +T+ G + ++ ++F+S ++V Sbjct: 1198 AKGDGAVVYVTTRAEAERLAWALGRIFPDLTVEAYHAGLAPLVRREIQERFMSGQTQVMV 1257 Query: 517 ATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQLPDAVIT 576 AT++F GVD + LV+ + P + L+ ++ G D E Sbjct: 1258 ATTAFGMGVD--KANIRLVVHWRPPLS------LEEYIQQAGRAGRDG-KEAYCLMLYTK 1308 Query: 577 LKQGV 581 QG+ Sbjct: 1309 ADQGI 1313 >UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus thermophilus RepID=Q746C7_THET2 Length = 1649 Score = 308 bits (789), Expect = 4e-82, Method: Composition-based stats. Identities = 156/685 (22%), Positives = 256/685 (37%), Gaps = 82/685 (11%) Query: 18 FKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRAKKKVIISTGSKALQD 77 KPR QR+M V +A+ + + L++EA TGTGKT YL P L +K ++T +K LQ Sbjct: 242 PKPRPAQRRMFQLVEEALSREEILLLEAPTGTGKTKGYLYPVLHQRKPTWVATHTKVLQA 301 Query: 78 QLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGD--LPVQILSDVILLRS 135 Q K Y AL+K + LC +RL + L P + + I + Sbjct: 302 QAMEELRAVAQK--GYQVRAALVKSPQDTLCPDRLLEAFLREARSGKPGEDVGAAIAVLL 359 Query: 136 WSNQTVDGDISTCVSVAEDSQAWPLVT----STNDNCLGSDCPMYKDCFVVKARKKAMDA 191 D+ + + + V + D C +CP C ++ +A Sbjct: 360 HYAAQRGHDLEALPAYWHFLEGFREVRGRVGTNPDRC-RRECPFASACAYQAILRRREEA 418 Query: 192 DVVVVNHHLFLADMVVKESGFGELIPE-ADVMIFDEAHQLPDIASQYFGQSLSSRQLLDL 250 ++V N L + + +PE ++ DEAH L D+A++ + L L Sbjct: 419 QILVTNQAYLLHSL-----LGEKALPEARPALVLDEAHHLEDVATEALTLKVDGEGLRHL 473 Query: 251 A---------------KDITIAYRTELKDTQQ-------------LQKCADRLAQSAQDF 282 +D + +L+ + + L+ ++R+ + + Sbjct: 474 LEALANPSKRSGLLQERDYLKSLEDDLRASAETLAEEAVPKALEALKAYSERMERFLKRR 533 Query: 283 RLQLGEPGYRGNLRELLANPQ-----------IQRAFLLLDDTLELCYDVAK-----LSL 326 + E G L + + ++ L LE D L Sbjct: 534 GVGSPEHGLTLPLEPSWTRDEEYPLLDREERHLIQSLEALAKGLEGLLDAHPPPWPLLLR 593 Query: 327 GRSALLDAAFERATLYRTRLKRLKEINQPG-YSYWYECTSRHFTLALTPLSVADKFKELM 385 LL + L+ R + LK + + + ++ P+ VA + +E + Sbjct: 594 EIRPLLQELRQAIRLFLRRKRVLKGEADEALHLTRLDPVTGTWSHLAEPIEVAAELEEKL 653 Query: 386 AQKPGSWIFTSATLSVNDD-----LHHFTSRLGIEQ-AESLLLPSPFDYSRQALLCVLRN 439 + TSATL+V + LG+ A + LP Y +A L V R+ Sbjct: 654 WPAFRGVVLTSATLAVPTETDPEGFAFLQRALGLPPQARAERLPPSLPY-HRAHLLVPRH 712 Query: 440 LPQTNQ---PGSARQLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPV-LLQ 495 LP+ + P R L LR ++ R L TS + + + L L + Sbjct: 713 LPEARESTLPRFQRLLHRELRLVLGQVP-RTLTLFTSLSRLEAAKKALEDLPHLRAPLTR 771 Query: 496 GETSKGQLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARME 555 E + + + SF EGVD+ L +V +++LPF P PLLK RM Sbjct: 772 REREDTVRFARSNPTEPLAALGSRSFMEGVDLP--HLRVVNLERLPFPYP-SPLLKRRMA 828 Query: 556 DCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDR-----GVLVICDNRLVMRPYGATF 610 RG DP+++ LP AV++ Q GRLIR DDR G ++ D +L+ Y F Sbjct: 829 LAYERGLDPWEDYYLPKAVLSFVQAFGRLIR--DDRQVAGDGAFILWDKKLLHADYQELF 886 Query: 611 LASLPPAPRTRDIARAVRFLAIPSS 635 +LP F Sbjct: 887 YRALPDGVAHHFPGDRQAFYRKLEE 911 Score = 51.6 bits (122), Expect = 8e-05, Method: Composition-based stats. Identities = 53/286 (18%), Positives = 98/286 (34%), Gaps = 22/286 (7%) Query: 292 RGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSALLDAAFERATLYRTRLKRLKE 351 + + L A L E + ++ G+ LL A ER K L+E Sbjct: 1016 KDQVDRLQELGLPALALHGLMSWGEQASVLDEVRAGQVRLLYLAPERINRSEAVRKALRE 1075 Query: 352 INQPGYSYWYECTSRHFTLALTPLSVADKFK--ELMAQKPGSWIFTSATLSVNDDLHHFT 409 + + G H L D K E + + F +ATL+ + Sbjct: 1076 LREAGKLVRVVFDEAHCLLEWGYDFRPDYLKVLEWLRELGLPMSFFTATLTPEER-ARLK 1134 Query: 410 SRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQLAAMLRPIIEANNGRCFM 469 GI +A + LP F + + G +LA L +E G + Sbjct: 1135 EVAGIPEAVEV-LPETFHRPNLRFVV----RQAPGEVGKFDRLAQALL-WVEKTGGSAIV 1188 Query: 470 LCTSH---AMMRDLAEQFRATMTLPVLLQGETS--KGQLLQQFVSAGNALLVATSSFWEG 524 TS + ++ ++ + G + ++ ++F+ + ++VAT++F G Sbjct: 1189 YATSRAETERLAWALDRLFPSLGVEAYHAGLGPVLRKEVQERFMRGESRVVVATTAFGMG 1248 Query: 525 VDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFDEVQL 570 VD + LV+ + P + L+ + G D + L Sbjct: 1249 VDKPD--VRLVVHWRPPLS------LEEYAQQAGRAGRDGKEAYAL 1286 >UniRef50_Q58352 Probable ATP-dependent helicase MJ0942 n=10 Tax=Methanococcales RepID=Y942_METJA Length = 651 Score = 308 bits (789), Expect = 4e-82, Method: Composition-based stats. Identities = 146/649 (22%), Positives = 253/649 (38%), Gaps = 95/649 (14%) Query: 9 GQLAKAIPGFKPREPQRQMAVAVTQAIEKGQPLVVEAGTGTGKTYAYLAPALRA---KKK 65 G + + P K REPQ++M + + + I+ + L+VEA TG GKT YL PAL +K+ Sbjct: 5 GYIKEKFPYPKVREPQKRMMLKIYECIKNKRNLIVEAPTGVGKTLGYLIPALYFAERRKR 64 Query: 66 VIISTGSKALQDQLYSRDLPTVSKALKYTGNVALLKGRSNYLCLERLEQQALAGGDLPVQ 125 V+I T + Q ++Y +L++ VA L G+SN++C + + Sbjct: 65 VLILTETIDQQVRIYEDL-----SSLRHNLKVAFLMGKSNFICKSKGGKAN--------- 110 Query: 126 ILSDVILLRSWSNQTVDGDISTCVSVAEDSQAWPLVTSTNDNCLGSDCPMYKDCFVVKAR 185 L + + I C + + V CP Y C KA+ Sbjct: 111 -RLYCQLNKKCLYRPNKRPICYCGTKKQPVNLGDKV--------IYYCP-YCTCEYQKAK 160 Query: 186 KKAMDADVVVVNHHLFLADMVVKESGFGELIPEADVMIFDEAHQLPDIASQYFGQSLSSR 245 +++ AD+VV+N+ +F E + D++I DEAH+L ++ Sbjct: 161 IESILADIVVMNNSMFY-----YAKEDIEAKRDIDIIICDEAHKLESSIRNTSTIIINPE 215 Query: 246 QLLDLAKDITIAYRTEL------KDTQQLQKCADRLA------------------QSAQD 281 ++ K + I Y + + + ++ ++ Sbjct: 216 LPINRLKYMAIHYAPNILKKRLDIGDENFWEIIEKYLTSRGINIDICKETIIFDGENLSS 275 Query: 282 FRLQLGEPGYRGNLRELLANPQIQRAFLLLDDTLELCYDVAKLSLGRSAL----LDAAFE 337 ++ + L I+ L ++ E+ + + + AL LD + Sbjct: 276 WKYKTELAVLGAILDAYYQINNIKNKILRFNENEEIDREELRFEIDNKALIAIELDFIHK 335 Query: 338 R------ATLYRTRLKRLKEINQPGYSYWYECTSRHFTLALTPLSVADKFKELMAQKPGS 391 + + +K L+ IN+ Y +L P+ V+ KEL Sbjct: 336 KKLSDLYLLEFIENIKNLRYINENYVVY-----RSGNSLLCEPVFVSSHLKELYGNAV-- 388 Query: 392 WIFTSATLSVNDDLHHFTSRLGIEQAESLLLPSPFDYSRQALLCVLRNLPQTNQPGSARQ 451 I SAT+ +L + G+++AE L+L SPF +R+ ++ + + + + Sbjct: 389 VIHCSATI---GNLKMHALKTGLDKAEFLILESPFPKNRKKIIALKDGVDMKYERKDREK 445 Query: 452 LAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFR--------ATMTLPVLLQGETSKG-- 501 L I+EA NG +L S + + + + V QG K Sbjct: 446 ANKNLLKILEAINGNSLVLFKSFEDLDSFYKYLKREITKTNIKNKNIHVYEQGMDGKEAK 505 Query: 502 QLLQQFVSAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKA--------R 553 +L ++F +L+AT F EGVD+ G+ L V+ID LPF P +L+ + Sbjct: 506 ELKERFEKI-GGILLATGRFAEGVDIPGEALVGVVIDSLPFPVPTPLILREQKILEERFK 564 Query: 554 MEDCRLRGGDPFDEVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLV 602 + R F TL Q +GRLIR +D GV+VI D R Sbjct: 565 IRGVRDAHWRAFLMTSFDRMARTLVQMIGRLIRTENDYGVVVIQDKRFA 613 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.311 0.134 0.357 Lambda K H 0.267 0.0408 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,408,173,353 Number of Sequences: 3077464 Number of extensions: 146043282 Number of successful extensions: 474355 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1481 Number of HSP's successfully gapped in prelim test: 1563 Number of HSP's that attempted gapping in prelim test: 462581 Number of HSP's gapped (non-prelim): 6066 length of query: 636 length of database: 1,040,396,356 effective HSP length: 135 effective length of query: 501 effective length of database: 624,938,716 effective search space: 313094296716 effective search space used: 313094296716 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 96 (41.6 bits)