10/01/2012 10:40:18 : INFO  : Run start: Tue Jan 10 10:40:18 GMT 2012
10/01/2012 10:40:20 : INFO  : Initialised job
10/01/2012 10:40:21 : INFO  : Renaming log file 'phyre2_20120110_104018.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/28c1d1f5f1308b2a/phyre_20120110_104018.log'
10/01/2012 10:40:21 : INFO  : Initialised job:
Sequence
>batch____
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKV
LDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHA
GQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRM
VPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK


10/01/2012 10:40:21 : INFO  : Checked sequence
10/01/2012 10:40:22 : INFO  : Finding homologues with PSI-BLAST
10/01/2012 10:40:23 : INFO  : PSI-BLAST 3 iterations
10/01/2012 10:42:14 : INFO  : PSI-BLAST 5 iterations
10/01/2012 10:45:02 : INFO  : Finished PSI-BLAST
10/01/2012 10:45:03 : INFO  : Running Buildali to generate a3m file
10/01/2012 11:32:34 : INFO  : Converting to HMM
10/01/2012 11:32:40 : INFO  : Calibrating HMM
10/01/2012 11:32:48 : INFO  : Searching HMM database
10/01/2012 11:38:03 : INFO  : Finished buildali
10/01/2012 11:38:04 : INFO  : Predicting secondary structure
10/01/2012 11:38:06 : INFO  : Predicted secondary structure (PSI-Pred)
10/01/2012 11:38:07 : INFO  : Predicting Disordered regions
10/01/2012 11:38:08 : INFO  : Predicted Disorder (Disopred)
10/01/2012 11:38:09 : INFO  : Running memsat_svm check
10/01/2012 11:39:54 : INFO  : Globular protein
10/01/2012 11:39:55 : INFO  : Predicted Transmembrane (memsat_svm) ID '28c1d1f5f1308b2a'
10/01/2012 11:39:55 : INFO  : Initialising fold library search
10/01/2012 11:39:56 : INFO  : Initialised search input
10/01/2012 11:39:57 : INFO  : Building Ensemble models
10/01/2012 11:39:58 : INFO  : Building hh.c3cc8A_.model.1.pdb
10/01/2012 11:40:05 : INFO  : Building hh.c1vl5B_.model.2.pdb
10/01/2012 11:40:10 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/28c1d1f5f1308b2a/hh.c1vl5B_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/28c1d1f5f1308b2a/c1vl5B_.2.pdb
10/01/2012 11:40:12 : INFO  : Building hh.d1vl5a_.model.3.pdb
10/01/2012 11:40:16 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/28c1d1f5f1308b2a/hh.d1vl5a_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/28c1d1f5f1308b2a/d1vl5a_.3.pdb
10/01/2012 11:40:18 : INFO  : Building hh.c3e8sA_.model.4.pdb
10/01/2012 11:40:23 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/28c1d1f5f1308b2a/hh.c3e8sA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/28c1d1f5f1308b2a/c3e8sA_.4.pdb
10/01/2012 11:40:24 : INFO  : Building hh.d1xxla_.model.5.pdb
10/01/2012 11:40:28 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/28c1d1f5f1308b2a/hh.d1xxla_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/28c1d1f5f1308b2a/d1xxla_.5.pdb
10/01/2012 11:40:30 : INFO  : Building hh.c3bkxB_.model.6.pdb
10/01/2012 11:40:34 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/28c1d1f5f1308b2a/hh.c3bkxB_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/28c1d1f5f1308b2a/c3bkxB_.6.pdb
10/01/2012 11:40:36 : INFO  : Building c3cc8A_.1.pdb
10/01/2012 11:40:41 : INFO  : Building c1vl5B_.2.pdb
10/01/2012 11:40:45 : INFO  : Building d1vl5a_.3.pdb
10/01/2012 11:40:51 : INFO  : Building c3e8sA_.4.pdb
10/01/2012 11:40:56 : INFO  : Building d1xxla_.5.pdb
10/01/2012 11:41:01 : INFO  : Building c3bkxB_.6.pdb
10/01/2012 11:41:08 : INFO  : Building d1kpia_.7.pdb
10/01/2012 11:41:13 : INFO  : Building c3e23A_.8.pdb
10/01/2012 11:41:19 : INFO  : Building c2fk8A_.9.pdb
10/01/2012 11:41:25 : INFO  : Building d2ex4a1.10.pdb
10/01/2012 11:41:31 : INFO  : Building c3l8dA_.11.pdb
10/01/2012 11:41:37 : INFO  : Building d1kpga_.12.pdb
10/01/2012 11:41:43 : INFO  : Building d2fk8a1.13.pdb
10/01/2012 11:41:49 : INFO  : Building c2yr0A_.14.pdb
10/01/2012 11:41:55 : INFO  : Building c3dlcA_.15.pdb
10/01/2012 11:42:00 : INFO  : Building c3ou7A_.16.pdb
10/01/2012 11:42:06 : INFO  : Building c2gs9A_.17.pdb
10/01/2012 11:42:12 : INFO  : Building d2o57a1.18.pdb
10/01/2012 11:42:19 : INFO  : Building d1l1ea_.19.pdb
10/01/2012 11:42:25 : INFO  : Building d2a14a1.20.pdb
10/01/2012 11:43:11 : INFO  : Finished HH model building
10/01/2012 11:43:11 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
10/01/2012 11:43:53 : INFO  : html domain output complete ID '28c1d1f5f1308b2a'
10/01/2012 12:25:19 : INFO  : Run end  : Tue Jan 10 12:25:19 GMT 2012
