15/01/2012 05:50:25 : INFO  : Run start: Sun Jan 15 05:50:24 GMT 2012
15/01/2012 05:50:31 : INFO  : Initialised job
15/01/2012 05:50:33 : INFO  : Renaming log file 'phyre2_20120115_055023.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/28abbde7ac7d287a/phyre_20120115_055023.log'
15/01/2012 05:50:34 : INFO  : Initialised job:
Sequence
>batch____
MSQVQFSHNPLFCIDIIKTYKPDFTPRVAFILGSGLGALADQIENAVAISYEKLPGFPVS
TVHGHAGELVLGHLQGVPVVCMKGRGHFYEGRGMTIMTDAIRTFKLLGCELLFCTNAAGS
LRPEVGAGSLVALKDHINTMPGTPMVGLNDDRFGERFFSLANAYDAEYRALLQKVAKEEG
FPLTEGVFVSYPGPNFETAAEIRMMQIIGGDVVGMSVVPEVISARHCDLKVVAVSAITNM
AEGLSDVKLSHAQTLAAAELSKQNFINLICGFLRKIA

15/01/2012 05:50:36 : INFO  : Checked sequence
15/01/2012 05:50:39 : INFO  : Finding homologues with PSI-BLAST
15/01/2012 05:50:41 : INFO  : PSI-BLAST 3 iterations
15/01/2012 05:52:06 : INFO  : PSI-BLAST 5 iterations
15/01/2012 05:53:32 : INFO  : Finished PSI-BLAST
15/01/2012 05:53:35 : INFO  : Running Buildali to generate a3m file
15/01/2012 06:00:52 : INFO  : Converting to HMM
15/01/2012 06:00:55 : INFO  : Calibrating HMM
15/01/2012 06:01:13 : INFO  : Searching HMM database
15/01/2012 06:06:17 : INFO  : Finished buildali
15/01/2012 06:06:19 : INFO  : Predicting secondary structure
15/01/2012 06:06:31 : INFO  : Predicted secondary structure (PSI-Pred)
15/01/2012 06:06:34 : INFO  : Predicting Disordered regions
15/01/2012 06:06:40 : INFO  : Predicted Disorder (Disopred)
15/01/2012 06:06:42 : INFO  : Running memsat_svm check
15/01/2012 06:09:54 : INFO  : Globular protein
15/01/2012 06:09:56 : INFO  : Predicted Transmembrane (memsat_svm) ID '28abbde7ac7d287a'
15/01/2012 06:09:58 : INFO  : Initialising fold library search
15/01/2012 06:10:02 : INFO  : Initialised search input
15/01/2012 06:10:04 : INFO  : Building Ensemble models
15/01/2012 06:10:08 : INFO  : Building hh.c1yr3A_.model.1.pdb
15/01/2012 06:10:27 : INFO  : Building c1yr3A_.1.pdb
15/01/2012 06:10:44 : INFO  : Building d3bgsa1.2.pdb
15/01/2012 06:11:03 : INFO  : Building c2p4sA_.3.pdb
15/01/2012 06:11:18 : INFO  : Building c3ggsA_.4.pdb
15/01/2012 06:11:35 : INFO  : Building d1g2oa_.5.pdb
15/01/2012 06:11:52 : INFO  : Building c1tcvB_.6.pdb
15/01/2012 06:12:09 : INFO  : Building d1qe5a_.7.pdb
15/01/2012 06:12:26 : INFO  : Building d3pnpa_.8.pdb
15/01/2012 06:12:45 : INFO  : Building c3khsB_.9.pdb
15/01/2012 06:13:04 : INFO  : Building d1vmka_.10.pdb
15/01/2012 06:13:25 : INFO  : Building c3la8A_.11.pdb
15/01/2012 06:13:43 : INFO  : Building c1wtaA_.12.pdb
15/01/2012 06:14:03 : INFO  : Building d1cb0a_.13.pdb
15/01/2012 06:14:23 : INFO  : Building d1v4na_.14.pdb
15/01/2012 06:14:42 : INFO  : Building c3ozbF_.15.pdb
15/01/2012 06:15:00 : INFO  : Building d1rxya_.16.pdb
15/01/2012 06:15:21 : INFO  : Building c3nm5B_.17.pdb
15/01/2012 06:15:40 : INFO  : Building c3qpbB_.18.pdb
15/01/2012 06:16:02 : INFO  : Building c1nw4C_.19.pdb
15/01/2012 06:16:20 : INFO  : Building d1q1ga_.20.pdb
15/01/2012 06:17:03 : INFO  : Finished HH model building
15/01/2012 06:17:05 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
15/01/2012 06:18:04 : INFO  : html domain output complete ID '28abbde7ac7d287a'
15/01/2012 07:08:53 : INFO  : Run end  : Sun Jan 15 07:08:52 GMT 2012
